SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47487 chr2L 52565 52591 jockey 7 5104 4.5 3.5 4.0 1.4 5131 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-765 2 chr2L 314287 314312 chr2L 314373 314398 5 85 1.5 0.0 0.8 2.8 111 chr2L 314287 intron Plc21C + chr2L 314342 intron Plc21C + chr2L 314398 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-765 3 chr2L 316715 316739 chr2L 316791 316815 7 76 1.5 0.5 1.0 3.5 100 chr2L 316715 intron Plc21C + chr2L 316765 intron Plc21C + chr2L 316815 intron Plc21C + chr2L_7_315001 chr2L_315001 RAL-765 4 chr2L 325127 325155 chr2L 325203 325232 6 76 3.0 2.0 2.5 1.7 105 chr2L 325127 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325232 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-765 5 chr2L 347894 347915 chr2L 355394 355415 blood 5 7499 3.5 1.5 2.5 1.4 7521 chr2L 347894 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-765 6 chr2L 630307 630329 chr2L 630399 630421 8 92 1.5 1.0 1.2 3.6 114 chr2L 630307 intergenic not near genes chr2L 630364 intergenic not near genes chr2L 630421 intergenic not near genes chr2L_8_630001 chr2L_630001 RAL-765 7 chr2L 686919 686945 chr2L 695959 695985 roo 4 9040 1.5 2.5 2.0 1.3 9066 chr2L 686919 intron ds - chr2L 691452 intron ds - chr2L 695985 intron ds - chr2L_4_690001 chr2L_690001 RAL-765 8 chr2L 908811 908832 chr2L 908895 908916 6 84 0.0 0.0 0.0 6.0 105 chr2L 908811 intergenic not near genes chr2L 908864 intergenic not near genes chr2L 908916 intergenic not near genes chr2L_6_905001 chr2L_905001 RAL-765 9 chr2L 923530 923549 chr2L 923714 923733 6 184 6.5 5.5 6.0 0.9 203 chr2L 923530 intron CG4341 + chr2L 923632 intron CG4341 + chr2L 923733 intron CG4341 + chr2L_6_920001 chr2L_920001 RAL-765 10 chr2L 971915 971931 chr2L 972006 972022 7 90 4.0 4.0 4.0 1.4 107 chr2L 971915 intergenic not near genes chr2L 971968 intergenic not near genes chr2L 972022 intergenic not near genes chr2L_7_970001 chr2L_970001 RAL-765 11 chr2L 976883 976899 chr2L 984519 984535 roo 6 7636 5.5 1.0 3.2 1.4 7652 chr2L 976883 intergenic not near genes chr2L 980709 intergenic not near genes chr2L 984535 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-765 12 chr2L 1035560 1035593 chr2L 1035637 1035670 8 77 3.0 3.0 3.0 2.0 110 chr2L 1035560 intron IA-2 - chr2L 1035615 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-765 13 chr2L 1042618 1042625 chr2L 1042695 1042702 4 77 1.0 0.0 0.5 2.7 84 chr2L 1042618 intron IA-2 - chr2L 1042660 intron IA-2 - chr2L 1042702 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-765 14 chr2L 1066105 1066126 chr2L 1066186 1066201 5 80 0.5 6.5 3.5 1.1 96 chr2L 1066105 intron S - chr2L 1066153 intron S - chr2L 1066201 intron S - chr2L_5_1065001 chr2L_1065001 RAL-765 15 chr2L 1156863 1156870 chr2L 1156968 1156975 6 105 4.5 1.5 3.0 1.5 112 chr2L 1156863 intron capt - chr2L 1156919 intron capt - chr2L 1156975 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-765 16 chr2L 1220132 1220162 chr2L 1227595 1227628 blood 6 7466 5.0 0.5 2.8 1.6 7496 chr2L 1220132 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-765 17 chr2L 1228365 1228395 chr2L 1228640 1228670 13 275 4.5 3.0 3.8 2.7 305 chr2L 1228365 exon CG42329 + chr2L 1228518 exon CG42329 + chr2L 1228670 intron CG42329 + chr2L_13_1225001 chr2L_1225001 RAL-765 18 chr2L 1322022 1322052 chr2L 1322111 1322141 5 85 1.0 1.0 1.0 2.5 119 chr2L 1322022 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322141 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-765 19 chr2L 1570700 1570719 chr2L 1573572 1573591 F-element 5 2872 1.5 3.0 2.2 1.6 2891 chr2L 1570700 intron haf + chr2L 1572146 intron haf + chr2L 1573591 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-765 20 chr2L 1678980 1679007 chr2L 1686445 1686472 blood 6 7465 0.0 3.0 1.5 2.4 7492 chr2L 1678980 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686472 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-765 21 chr2L 1711356 1711388 chr2L 1711680 1711712 mdg3 13 321 6.0 2.5 4.2 2.5 356 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_13_1710001 chr2L_1710001 RAL-765 22 chr2L 1736029 1736041 chr2L 1736143 1736155 4 114 2.0 4.0 3.0 1.0 126 chr2L 1736029 intron CG17646 + chr2L 1736092 intron CG17646 + chr2L 1736155 intron CG17646 + chr2L_4_1735001 chr2L_1735001 RAL-765 23 chr2L 1837822 1837830 chr2L 1838052 1838060 5 229 0.0 5.0 2.5 1.4 238 chr2L 1837822 intron wry + chr2L 1837941 intron wry + chr2L 1838060 intron wry + chr2L_5_1835001 chr2L_1835001 RAL-765 24 chr2L 1917441 1917466 chr2L 1917632 1917657 9 189 0.0 1.5 0.8 5.0 216 chr2L 1917441 intron CG7337 + chr2L 1917549 intron CG7337 + chr2L 1917657 intron CG7337 + chr2L_9_1915001 chr2L_1915001 RAL-765 25 chr2L 1993197 1993229 chr2L 1993283 1993315 6 86 1.5 1.5 1.5 2.4 118 chr2L 1993197 intergenic not near genes chr2L 1993256 intergenic not near genes chr2L 1993315 intergenic not near genes chr2L_6_1990001 chr2L_1990001 RAL-765 26 chr2L 1995679 1995704 chr2L 1995772 1995797 5 92 2.0 3.5 2.8 1.3 118 chr2L 1995679 intergenic not near genes chr2L 1995738 intergenic not near genes chr2L 1995797 intergenic not near genes chr2L_5_1995001 chr2L_1995001 RAL-765 27 chr2L 2022726 2022750 chr2L 2022802 2022823 10 73 1.0 3.0 2.0 3.3 97 chr2L 2022726 intron CG4238 + chr2L 2022774 intron CG4238 + chr2L 2022823 intron CG4238 + chr2L_10_2020001 chr2L_2020001 RAL-765 28 chr2L 2044736 2044765 chr2L 2044962 2044968 16 224 3.0 4.5 3.8 3.3 232 chr2L 2044736 3` UTR CR45298 - chr2L 2044852 3` UTR CR45298 - chr2L 2044968 3` UTR CR45298 - chr2L_16_2040001 chr2L_2040001 RAL-765 29 chr2L 2068808 2068832 chr2L 2068991 2069016 15 184 3.0 0.0 1.5 6.0 208 chr2L 2068808 intron dpr3 - chr2L 2068912 intron dpr3 - chr2L 2069016 intron dpr3 - chr2L_15_2065001 chr2L_2065001 RAL-765 30 chr2L 2100376 2100406 chr2L 2109527 2109551 roo 7 9150 3.5 4.0 3.8 1.5 9175 chr2L 2100376 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-765 31 chr2L 2260813 2260838 chr2L 2260899 2260924 5 86 2.5 1.0 1.8 1.8 111 chr2L 2260813 intergenic not near genes chr2L 2260868 intergenic not near genes chr2L 2260924 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-765 32 chr2L 2294047 2294075 chr2L 2299251 2299280 copia 9 5204 1.0 5.0 3.0 2.2 5233 chr2L 2294047 intergenic not near genes chr2L 2296664 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_9_2295001 chr2L_2295001 RAL-765 33 chr2L 2311071 2311088 chr2L 2311167 2311184 8 96 2.0 3.0 2.5 2.3 113 chr2L 2311071 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311184 intron CG9967 - chr2L_8_2310001 chr2L_2310001 RAL-765 34 chr2L 2373289 2373299 chr2L 2373381 2373392 5 92 1.0 2.5 1.8 1.8 103 chr2L 2373289 exon CG3609 - chr2L 2373340 exon CG3609 - chr2L 2373392 exon CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-765 35 chr2L 2399386 2399415 chr2L 2399484 2399513 6 98 0.0 0.5 0.2 5.0 127 chr2L 2399386 intron VGlut + chr2L 2399450 intron VGlut + chr2L 2399513 intron VGlut + chr2L_6_2395001 chr2L_2395001 RAL-765 36 chr2L 2543480 2543511 chr2L 2543588 2543619 9 107 2.5 2.0 2.2 2.8 139 chr2L 2543480 intergenic not near genes chr2L 2543550 intergenic not near genes chr2L 2543619 intergenic not near genes chr2L_9_2540001 chr2L_2540001 RAL-765 37 chr2L 2587815 2587845 chr2L 2587893 2587924 7 79 1.0 1.5 1.2 3.2 109 chr2L 2587815 intergenic not near genes chr2L 2587870 intergenic not near genes chr2L 2587924 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-765 38 chr2L 2618042 2618065 chr2L 2618121 2618144 6 79 2.0 3.5 2.8 1.6 102 chr2L 2618042 intergenic not near genes chr2L 2618093 intergenic not near genes chr2L 2618144 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-765 39 chr2L 2667629 2667658 chr2L 2667708 2667737 7 78 2.5 2.0 2.2 2.2 108 chr2L 2667629 intergenic not near genes chr2L 2667683 intergenic not near genes chr2L 2667737 intergenic not near genes chr2L_7_2665001 chr2L_2665001 RAL-765 40 chr2L 2698865 2698886 chr2L 2698952 2698972 7 87 1.0 2.5 1.8 2.5 107 chr2L 2698865 intron CG31690 + chr2L 2698918 intron CG31690 + chr2L 2698972 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-765 41 chr2L 2826539 2826574 chr2L 2826630 2826658 5 84 0.0 3.5 1.8 1.8 119 chr2L 2826539 intron Duox - chr2L 2826598 intron Duox - chr2L 2826658 intron Duox - chr2L_5_2825001 chr2L_2825001 RAL-765 42 chr2L 2831084 2831091 chr2L 2831190 2831197 5 106 2.0 0.0 1.0 2.5 113 chr2L 2831084 intergenic not near genes chr2L 2831140 intergenic not near genes chr2L 2831197 intergenic not near genes chr2L_5_2830001 chr2L_2830001 RAL-765 43 chr2L 2937421 2937439 chr2L 2937498 2937516 4 77 1.0 2.0 1.5 1.6 95 chr2L 2937421 intron lilli + chr2L 2937468 intron lilli + chr2L 2937516 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-765 44 chr2L 3073029 3073061 chr2L 3078232 3078263 copia 5 5202 2.5 2.5 2.5 1.4 5234 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078263 intron toc - chr2L_5_3075001 chr2L_3075001 RAL-765 45 chr2L 3087382 3087412 chr2L 3087490 3087519 6 107 1.0 2.5 1.8 2.1 137 chr2L 3087382 intron toc - chr2L 3087450 intron toc - chr2L 3087519 intron toc - chr2L_6_3085001 chr2L_3085001 RAL-765 46 chr2L 3108876 3108894 chr2L 3108953 3108971 4 75 1.0 3.5 2.2 1.2 95 chr2L 3108876 intron toc - chr2L 3108924 intron toc - chr2L 3108971 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-765 47 chr2L 3240603 3240636 chr2L 3240975 3241007 7 372 3.0 0.5 1.8 2.5 404 chr2L 3240603 intergenic not near genes chr2L 3240805 intergenic not near genes chr2L 3241007 intergenic not near genes chr2L_7_3240001 chr2L_3240001 RAL-765 48 chr2L 3314697 3314728 chr2L 3314774 3314805 7 77 3.0 2.5 2.8 1.8 108 chr2L 3314697 intron CG3277 + chr2L 3314751 intron CG3277 + chr2L 3314805 intron CG3277 + chr2L_7_3310001 chr2L_3310001 RAL-765 49 chr2L 3321618 3321652 chr2L 3321698 3321732 17 78 1.0 5.0 3.0 4.2 114 chr2L 3321618 exon CG8837 + chr2L 3321675 exon CG8837 + chr2L 3321732 exon CG8837 + chr2L_17_3320001 chr2L_3320001 RAL-765 50 chr2L 3388598 3388628 chr2L 3388839 3388869 pogo 5 241 1.5 2.0 1.8 1.8 271 chr2L 3388598 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388869 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 RAL-765 51 chr2L 3393284 3393315 chr2L 3393382 3393410 9 97 1.0 3.0 2.0 3.0 126 chr2L 3393284 intergenic not near genes chr2L 3393347 intergenic not near genes chr2L 3393410 intergenic not near genes chr2L_9_3390001 chr2L_3390001 RAL-765 52 chr2L 3461782 3461789 chr2L 3464874 3464902 8 3098 17.0 36.5 26.8 0.3 3120 chr2L 3461782 exon CG3246 - chr2L 3463342 exon,3` UTR msl-2 -,mir-4971 - chr2L 3464902 exon msl-2 - chr2L_8_3460001 chr2L_3460001 RAL-765 53 chr2L 3523035 3523053 chr2L 3523148 3523166 7 112 2.0 3.0 2.5 2.0 131 chr2L 3523035 exon Sr-CIV - chr2L 3523100 intron Sr-CIV - chr2L 3523166 exon Sr-CIV - chr2L_7_3520001 chr2L_3520001 RAL-765 54 chr2L 3582886 3582911 chr2L 3582962 3582988 10 77 2.0 3.5 2.8 2.6 102 chr2L 3582886 intergenic not near genes chr2L 3582937 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_10_3580001 chr2L_3580001 RAL-765 55 chr2L 3616584 3616593 chr2L 3616661 3616670 4 77 0.0 3.0 1.5 1.6 86 chr2L 3616584 5` UTR CR44310 + chr2L 3616627 5` UTR CR44310 + chr2L 3616670 5` UTR CR44310 + chr2L_4_3615001 chr2L_3615001 RAL-765 56 chr2L 3632353 3632389 chr2L 3632476 3632512 16 123 1.5 2.5 2.0 5.3 159 chr2L 3632353 intron for - chr2L 3632432 intron for - chr2L 3632512 intron for - chr2L_16_3630001 chr2L_3630001 RAL-765 57 chr2L 3649781 3649810 chr2L 3654998 3655027 copia 4 5217 2.0 3.5 2.8 1.1 5246 chr2L 3649781 intron for - chr2L 3652404 intron for - chr2L 3655027 intron for - chr2L_4_3650001 chr2L_3650001 RAL-765 58 chr2L 3702911 3702928 chr2L 3702997 3703005 6 84 3.5 4.5 4.0 1.2 94 chr2L 3702911 5` UTR CR44311 + chr2L 3702958 intergenic CR44311 + chr2L 3703005 intergenic CR44311 + chr2L_6_3700001 chr2L_3700001 RAL-765 59 chr2L 3787660 3787676 chr2L 3787774 3787790 4 114 0.5 1.5 1.0 2.0 130 chr2L 3787660 intron CG3921 + chr2L 3787725 intron CG3921 + chr2L 3787790 intron CG3921 + chr2L_4_3785001 chr2L_3785001 RAL-765 60 chr2L 3931994 3932024 chr2L 3934960 3934991 13 2967 10.0 6.0 8.0 1.4 2997 chr2L 3931994 intron fred - chr2L 3933492 intron fred - chr2L 3934991 intron fred - chr2L_13_3930001 chr2L_3930001 RAL-765 61 chr2L 3931431 3931433 chr2L 3935887 3935915 6 4461 0.0 18.5 9.2 0.6 4484 chr2L 3931431 intron fred - chr2L 3933673 intron fred - chr2L 3935915 intron fred - chr2L_6_3930001 chr2L_3930001 RAL-765 62 chr2L 3960561 3960597 chr2L 3960731 3960766 8 170 2.5 0.5 1.5 3.2 205 chr2L 3960561 intron fred - chr2L 3960664 intron fred - chr2L 3960766 intron fred - chr2L_8_3960001 chr2L_3960001 RAL-765 63 chr2L 4066049 4066064 chr2L 4068874 4068889 Juan 5 2824 0.5 5.0 2.8 1.3 2840 chr2L 4066049 intron ed + chr2L 4067469 intron ed + chr2L 4068889 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-765 64 chr2L 4166378 4166389 chr2L 4166461 4166471 4 83 3.5 2.5 3.0 1.0 93 chr2L 4166378 intergenic Or24a - chr2L 4166424 intergenic Or24a - chr2L 4166471 intergenic Or24a - chr2L_4_4165001 chr2L_4165001 RAL-765 65 chr2L 4166391 4166411 chr2L 4166458 4166494 11 81 2.5 2.0 2.2 3.4 103 chr2L 4166391 intergenic Or24a - chr2L 4166442 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-765 66 chr2L 4184495 4184506 chr2L 4184814 4184824 5 319 0.0 1.0 0.5 3.3 329 chr2L 4184495 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184824 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-765 67 chr2L 4242603 4242633 chr2L 4242682 4242712 7 76 0.0 0.5 0.2 5.8 109 chr2L 4242603 intergenic CR44058 + chr2L 4242658 intergenic CR44058 + chr2L 4242712 intergenic CR44058 + chr2L_7_4240001 chr2L_4240001 RAL-765 68 chr2L 4270461 4270491 chr2L 4270540 4270570 5 79 3.5 2.5 3.0 1.2 109 chr2L 4270461 intergenic not near genes chr2L 4270516 intergenic not near genes chr2L 4270570 intergenic not near genes chr2L_5_4270001 chr2L_4270001 RAL-765 69 chr2L 4285709 4285733 chr2L 4285789 4285813 12 79 6.0 2.5 4.2 2.3 104 chr2L 4285709 intron tutl + chr2L 4285761 intron tutl + chr2L 4285813 intron tutl + chr2L_12_4285001 chr2L_4285001 RAL-765 70 chr2L 4586970 4586994 chr2L 4587061 4587086 8 92 3.0 5.5 4.2 1.5 116 chr2L 4586970 intron dp - chr2L 4587028 intron dp - chr2L 4587086 intron dp - chr2L_8_4585001 chr2L_4585001 RAL-765 71 chr2L 4601706 4601736 chr2L 4609147 4609177 mdg1 9 7441 2.0 3.5 2.8 2.4 7471 chr2L 4601706 intron dp - chr2L 4605442 intron dp - chr2L 4609177 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-765 72 chr2L 4661054 4661080 chr2L 4661136 4661162 6 82 1.0 0.0 0.5 4.0 108 chr2L 4661054 intergenic not near genes chr2L 4661108 intergenic not near genes chr2L 4661162 intergenic not near genes chr2L_6_4660001 chr2L_4660001 RAL-765 73 chr2L 4676860 4676889 chr2L 4676939 4676968 7 79 4.0 2.5 3.2 1.7 108 chr2L 4676860 intergenic not near genes chr2L 4676914 intergenic not near genes chr2L 4676968 intergenic not near genes chr2L_7_4675001 chr2L_4675001 RAL-765 74 chr2L 4781128 4781134 chr2L 4781238 4781244 4 110 4.0 0.0 2.0 1.3 116 chr2L 4781128 intron CG15630 - chr2L 4781186 intron CG15630 - chr2L 4781244 intron CG15630 - chr2L_4_4780001 chr2L_4780001 RAL-765 75 chr2L 4819496 4819507 chr2L 4819619 4819630 5 123 3.0 4.0 3.5 1.1 134 chr2L 4819496 intergenic not near genes chr2L 4819563 intergenic not near genes chr2L 4819630 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-765 76 chr2L 4901134 4901166 chr2L 4901236 4901267 10 101 2.5 2.0 2.2 3.1 133 chr2L 4901134 intron CG3036 + chr2L 4901200 intron CG3036 + chr2L 4901267 intron CG3036 + chr2L_10_4900001 chr2L_4900001 RAL-765 77 chr2L 4918162 4918181 chr2L 4923235 4923253 jockey 4 5073 1.0 0.5 0.8 2.2 5091 chr2L 4918162 intron hoe1 - chr2L 4920708 intron hoe1 - chr2L 4923253 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-765 78 chr2L 4953515 4953538 chr2L 4953756 4953779 pogo 8 240 5.0 2.5 3.8 1.7 264 chr2L 4953515 intergenic Jon25Bii - chr2L 4953647 intergenic not near genes chr2L 4953779 intergenic Jon25Bi - chr2L_8_4950001 chr2L_4950001 RAL-765 79 chr2L 5120983 5121002 chr2L 5121076 5121096 6 93 1.5 2.0 1.8 2.1 113 chr2L 5120983 intron Msp300 + chr2L 5121040 intron Msp300 + chr2L 5121096 intron Msp300 + chr2L_6_5120001 chr2L_5120001 RAL-765 80 chr2L 5152738 5152766 chr2L 5152826 5152854 6 88 1.0 2.0 1.5 2.4 116 chr2L 5152738 intron Msp300 + chr2L 5152796 intron Msp300 + chr2L 5152854 intron Msp300 + chr2L_6_5150001 chr2L_5150001 RAL-765 81 chr2L 5242865 5242901 chr2L 5243055 5243091 12 190 3.5 2.5 3.0 3.0 226 chr2L 5242865 intron tkv - chr2L 5242978 intron tkv - chr2L 5243091 intron tkv - chr2L_12_5240001 chr2L_5240001 RAL-765 82 chr2L 5242936 5242936 chr2L 16217660 16217660 7 10974724 0.0 13.0 6.5 0.9 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_7_10730001 chr2L_10730001 RAL-765 83 chr2L 5342772 5342801 chr2L 5345152 5345181 Doc 5 2380 1.5 2.0 1.8 1.8 2409 chr2L 5342772 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345181 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-765 84 chr2L 5563686 5563718 chr2L 5563770 5563802 6 84 0.0 0.0 0.0 6.0 116 chr2L 5563686 intergenic GluRIIB + chr2L 5563744 intergenic GluRIIB + chr2L 5563802 intergenic GluRIIB + chr2L_6_5560001 chr2L_5560001 RAL-765 85 chr2L 5676893 5676922 chr2L 5676989 5677018 11 96 0.5 1.0 0.8 6.1 125 chr2L 5676893 intergenic not near genes chr2L 5676956 intergenic not near genes chr2L 5677018 intergenic not near genes chr2L_11_5675001 chr2L_5675001 RAL-765 86 chr2L 5827720 5827731 chr2L 5836728 5836739 roo 5 9008 3.0 6.5 4.8 0.9 9019 chr2L 5827720 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836739 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-765 87 chr2L 5897593 5897627 chr2L 5897676 5897710 20 82 4.5 4.0 4.2 3.8 117 chr2L 5897593 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897710 intergenic not near genes chr2L_20_5895001 chr2L_5895001 RAL-765 88 chr2L 5931316 5931329 chr2L 5931428 5931441 4 112 1.0 5.0 3.0 1.0 125 chr2L 5931316 intron dsf + chr2L 5931378 intron dsf + chr2L 5931441 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-765 89 chr2L 6002439 6002460 chr2L 6002525 6002545 4 86 2.5 0.5 1.5 1.6 106 chr2L 6002439 3` UTR Tsp26A + chr2L 6002492 3` UTR Tsp26A + chr2L 6002545 3` UTR Tsp26A + chr2L_4_6000001 chr2L_6000001 RAL-765 90 chr2L 6007098 6007109 chr2L 6007172 6007185 5 76 1.0 0.0 0.5 3.3 87 chr2L 6007098 intergenic CG9098 -,Gal - chr2L 6007142 intergenic CG9098 -,Gal - chr2L 6007185 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-765 91 chr2L 6283945 6283978 chr2L 6284055 6284089 5 110 0.0 0.5 0.2 4.2 144 chr2L 6283945 intron Ddr + chr2L 6284017 intron Ddr + chr2L 6284089 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-765 92 chr2L 6308310 6308344 chr2L 6308393 6308427 9 83 3.0 1.0 2.0 3.0 117 chr2L 6308310 intron Ddr + chr2L 6308368 intron Ddr + chr2L 6308427 intron,3` UTR Ddr +,CG43922 - chr2L_9_6305001 chr2L_6305001 RAL-765 93 chr2L 6363148 6363176 chr2L 6366070 6366098 Burdock 11 2919 4.0 1.0 2.5 3.1 2950 chr2L 6363148 intergenic not near genes chr2L 6364623 intergenic not near genes chr2L 6366098 intergenic not near genes chr2L_11_6360001 chr2L_6360001 RAL-765 94 chr2L 6426853 6426889 chr2L 6445113 6445147 roo 18 18260 2.0 3.5 2.8 4.7 18294 chr2L 6426853 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_18_6435001 chr2L_6435001 RAL-765 95 chr2L 6544377 6544395 chr2L 6544467 6544487 8 92 4.0 2.0 3.0 2.0 110 chr2L 6544377 intron eya - chr2L 6544432 intron eya - chr2L 6544487 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-765 96 chr2L 6626884 6626916 chr2L 6626969 6626996 10 83 3.0 2.5 2.8 2.6 112 chr2L 6626884 intron Oatp26F - chr2L 6626940 intron Oatp26F - chr2L 6626996 intron Oatp26F - chr2L_10_6625001 chr2L_6625001 RAL-765 97 chr2L 6640912 6640938 chr2L 6641007 6641032 5 95 2.5 2.0 2.2 1.6 120 chr2L 6640912 exon CG31635 - chr2L 6640972 intron CG31635 - chr2L 6641032 intron CG31635 - chr2L_5_6640001 chr2L_6640001 RAL-765 98 chr2L 6655532 6655544 chr2L 6655894 6655905 4 362 6.0 5.5 5.8 0.6 373 chr2L 6655532 exon CG31633 - chr2L 6655718 exon CG31633 - chr2L 6655905 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-765 99 chr2L 6771990 6772008 chr2L 6772077 6772082 4 84 2.5 3.5 3.0 1.0 92 chr2L 6771990 intron CG11321 - chr2L 6772036 intron CG11321 - chr2L 6772082 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-765 100 chr2L 6850379 6850410 chr2L 6850461 6850493 6 83 1.5 3.0 2.2 1.9 114 chr2L 6850379 intergenic not near genes chr2L 6850436 intergenic not near genes chr2L 6850493 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-765 101 chr2L 6876774 6876792 chr2L 6882965 6882982 diver 4 6190 5.0 0.5 2.8 1.1 6208 chr2L 6876774 intron Nlg2 + chr2L 6879878 intron Nlg2 + chr2L 6882982 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-765 102 chr2L 6986191 6986209 chr2L 6986290 6986312 5 102 3.5 1.5 2.5 1.4 121 chr2L 6986191 intron,5` UTR uif -,CR44326 + chr2L 6986252 intron,5` UTR uif -,CR44326 + chr2L 6986312 intron,5` UTR uif -,CR44326 + chr2L_5_6985001 chr2L_6985001 RAL-765 103 chr2L 7042062 7042079 chr2L 7042151 7042168 4 89 2.0 2.0 2.0 1.3 106 chr2L 7042062 intron milt + chr2L 7042115 intron milt + chr2L 7042168 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-765 104 chr2L 7043681 7043706 chr2L 7043758 7043779 9 76 1.0 1.0 1.0 4.5 98 chr2L 7043681 intron milt + chr2L 7043730 intron milt + chr2L 7043779 intron milt + chr2L_9_7040001 chr2L_7040001 RAL-765 105 chr2L 7165778 7165811 chr2L 7165859 7165891 6 80 1.0 1.0 1.0 3.0 113 chr2L 7165778 intergenic not near genes chr2L 7165834 intergenic not near genes chr2L 7165891 intergenic not near genes chr2L_6_7165001 chr2L_7165001 RAL-765 106 chr2L 7325915 7325947 chr2L 7326000 7326032 4 84 1.0 0.0 0.5 2.7 117 chr2L 7325915 intergenic not near genes chr2L 7325974 intergenic not near genes chr2L 7326032 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-765 107 chr2L 7335208 7335231 chr2L 7335305 7335328 4 97 1.0 0.5 0.8 2.2 120 chr2L 7335208 intron Wnt6 + chr2L 7335268 intron Wnt6 + chr2L 7335328 intron Wnt6 + chr2L_4_7335001 chr2L_7335001 RAL-765 108 chr2L 7337010 7337023 chr2L 7337085 7337097 6 76 1.5 4.5 3.0 1.5 87 chr2L 7337010 intron Wnt6 + chr2L 7337054 intron Wnt6 + chr2L 7337097 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-765 109 chr2L 7343325 7343358 chr2L 7350441 7350473 roo 6 7116 4.0 5.0 4.5 1.1 7148 chr2L 7343325 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-765 110 chr2L 7363536 7363551 chr2L 7363614 7363629 6 78 0.0 3.0 1.5 2.4 93 chr2L 7363536 5` UTR Wnt10 + chr2L 7363582 5` UTR Wnt10 + chr2L 7363629 5` UTR Wnt10 + chr2L_6_7360001 chr2L_7360001 RAL-765 111 chr2L 7489701 7489727 chr2L 7489790 7489816 4 89 2.5 3.0 2.8 1.1 115 chr2L 7489701 intron Ziz - chr2L 7489758 intron Ziz - chr2L 7489816 intron Ziz - chr2L_4_7485001 chr2L_7485001 RAL-765 112 chr2L 7516336 7516350 chr2L 7516450 7516465 4 114 1.5 1.5 1.5 1.6 129 chr2L 7516336 intron RapGAP1 - chr2L 7516400 intron RapGAP1 - chr2L 7516465 intron RapGAP1 - chr2L_4_7515001 chr2L_7515001 RAL-765 113 chr2L 7567517 7567526 chr2L 7567611 7567620 4 94 0.5 4.5 2.5 1.1 103 chr2L 7567517 intron RapGAP1 - chr2L 7567568 intron RapGAP1 - chr2L 7567620 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-765 114 chr2L 7579217 7579229 chr2L 7579408 7579420 BS 4 191 0.0 0.0 0.0 4.0 203 chr2L 7579217 intergenic RapGAP1 - chr2L 7579318 intergenic RapGAP1 - chr2L 7579420 intergenic RapGAP1 - chr2L_4_7575001 chr2L_7575001 RAL-765 115 chr2L 7789457 7789484 chr2L 7789533 7789560 6 76 0.0 2.0 1.0 3.0 103 chr2L 7789457 intron CG7149 - chr2L 7789508 intron CG7149 - chr2L 7789560 intron CG7149 - chr2L_6_7785001 chr2L_7785001 RAL-765 116 chr2L 7829272 7829302 chr2L 7829370 7829400 11 98 1.5 2.0 1.8 3.9 128 chr2L 7829272 intron mts + chr2L 7829336 intron mts + chr2L 7829400 intron mts + chr2L_11_7825001 chr2L_7825001 RAL-765 117 chr2L 7855446 7855478 chr2L 7855536 7855569 11 89 1.0 1.5 1.2 5.0 123 chr2L 7855446 5` UTR CG14535 - chr2L 7855508 intergenic CG14535 - chr2L 7855569 intergenic CG14535 - chr2L_11_7855001 chr2L_7855001 RAL-765 118 chr2L 7867568 7867599 chr2L 7867662 7867693 10 94 2.5 0.5 1.5 4.0 125 chr2L 7867568 intron Proc - chr2L 7867630 intron Proc - chr2L 7867693 intron Proc - chr2L_10_7865001 chr2L_7865001 RAL-765 119 chr2L 7959053 7959064 chr2L 7960464 7960472 pogo 4 1408 3.0 0.0 1.5 1.6 1419 chr2L 7959053 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960472 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-765 120 chr2L 8013618 8013635 chr2L 8018819 8018838 copia 4 5203 1.5 0.0 0.8 2.2 5220 chr2L 8013618 intron Tg + chr2L 8016228 intron Tg + chr2L 8018838 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-765 121 chr2L 8108925 8108942 chr2L 8109021 8109038 5 96 1.5 1.0 1.2 2.3 113 chr2L 8108925 3` UTR Bsg + chr2L 8108982 3` UTR Bsg + chr2L 8109038 3` UTR Bsg + chr2L_5_8105001 chr2L_8105001 RAL-765 122 chr2L 8167145 8167173 chr2L 8167235 8167264 6 91 2.0 3.0 2.5 1.7 119 chr2L 8167145 intron Piezo + chr2L 8167204 intron Piezo + chr2L 8167264 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-765 123 chr2L 8286297 8286329 chr2L 8286384 8286415 8 86 3.5 4.5 4.0 1.6 118 chr2L 8286297 intron Btk29A - chr2L 8286356 intron Btk29A - chr2L 8286415 intron Btk29A - chr2L_8_8285001 chr2L_8285001 RAL-765 124 chr2L 8452427 8452448 chr2L 8461598 8461618 roo 5 9171 1.5 3.0 2.2 1.6 9191 chr2L 8452427 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461618 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-765 125 chr2L 8614244 8614277 chr2L 8614322 8614355 4 78 2.5 1.0 1.8 1.4 111 chr2L 8614244 intron Sema-1a + chr2L 8614300 intron Sema-1a + chr2L 8614355 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-765 126 chr2L 8719209 8719233 chr2L 8719285 8719309 11 76 1.0 2.0 1.5 4.4 100 chr2L 8719209 intron raw - chr2L 8719259 intron raw - chr2L 8719309 intron raw - chr2L_11_8715001 chr2L_8715001 RAL-765 127 chr2L 8723115 8723147 chr2L 8731492 8731524 Tirant 10 8377 2.5 2.0 2.2 3.1 8409 chr2L 8723115 intron raw - chr2L 8727320 intron raw - chr2L 8731524 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-765 128 chr2L 8789309 8789337 chr2L 8789384 8789413 8 74 1.5 3.5 2.5 2.3 104 chr2L 8789309 intergenic not near genes chr2L 8789361 intergenic not near genes chr2L 8789413 intergenic not near genes chr2L_8_8785001 chr2L_8785001 RAL-765 129 chr2L 8883161 8883189 chr2L 8883239 8883267 9 78 3.0 2.5 2.8 2.4 106 chr2L 8883161 intergenic not near genes chr2L 8883214 intergenic not near genes chr2L 8883267 intergenic not near genes chr2L_9_8880001 chr2L_8880001 RAL-765 130 chr2L 8997603 8997620 chr2L 8997838 8997856 8 236 7.5 6.0 6.8 1.0 253 chr2L 8997603 intergenic CG18661 +,alien - chr2L 8997730 intron CG18661 + chr2L 8997856 exon CG18661 + chr2L_8_8995001 chr2L_8995001 RAL-765 131 chr2L 9084337 9084340 chr2L 16217660 16217660 9 7133321 7.0 13.0 10.0 0.8 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-765 132 chr2L 9128576 9128605 chr2L 9128674 9128703 10 98 3.5 3.0 3.2 2.4 127 chr2L 9128576 intron CG32982 + chr2L 9128640 intron CG32982 + chr2L 9128703 intron CG32982 + chr2L_10_9125001 chr2L_9125001 RAL-765 133 chr2L 9139002 9139033 chr2L 9139083 9139114 6 80 1.0 2.0 1.5 2.4 112 chr2L 9139002 intron CG32982 + chr2L 9139058 intron CG32982 + chr2L 9139114 intron CG32982 + chr2L_6_9135001 chr2L_9135001 RAL-765 134 chr2L 9217971 9217998 chr2L 9222758 9222785 Doc 9 4786 0.5 2.0 1.2 4.1 4814 chr2L 9217971 intron tai + chr2L 9220378 intron tai + chr2L 9222785 intron tai + chr2L_9_9220001 chr2L_9220001 RAL-765 135 chr2L 9280014 9280019 chr2L 9280104 9280113 4 93 0.0 1.5 0.8 2.2 99 chr2L 9280014 intron Ggamma30A + chr2L 9280064 intron Ggamma30A + chr2L 9280113 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-765 136 chr2L 9297379 9297393 chr2L 9297456 9297470 4 77 2.5 4.0 3.2 1.0 91 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297424 3` UTR Ggamma30A + chr2L 9297470 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-765 137 chr2L 9303516 9303548 chr2L 9303595 9303628 10 80 2.0 2.0 2.0 3.3 112 chr2L 9303516 intergenic not near genes chr2L 9303572 intergenic not near genes chr2L 9303628 intergenic not near genes chr2L_10_9300001 chr2L_9300001 RAL-765 138 chr2L 9305377 9305406 chr2L 9305763 9305790 8 385 2.5 1.5 2.0 2.7 413 chr2L 9305377 intergenic CR42844 - chr2L 9305584 intergenic not near genes chr2L 9305790 intergenic not near genes chr2L_8_9305001 chr2L_9305001 RAL-765 139 chr2L 9391671 9391701 chr2L 9391758 9391788 8 87 3.0 1.5 2.2 2.5 117 chr2L 9391671 intron Shawl - chr2L 9391730 intron Shawl - chr2L 9391788 intron Shawl - chr2L_8_9390001 chr2L_9390001 RAL-765 140 chr2L 9393499 9393525 chr2L 9396465 9396492 jockey 4 2967 0.5 3.0 1.8 1.4 2993 chr2L 9393499 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396492 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-765 141 chr2L 9460757 9460775 chr2L 9460843 9460849 5 83 4.5 0.0 2.2 1.6 92 chr2L 9460757 intron numb + chr2L 9460803 intron numb + chr2L 9460849 intron numb + chr2L_5_9460001 chr2L_9460001 RAL-765 142 chr2L 9490520 9490545 chr2L 9490600 9490625 7 80 4.0 1.5 2.8 1.8 105 chr2L 9490520 intergenic not near genes chr2L 9490572 intergenic not near genes chr2L 9490625 intergenic not near genes chr2L_7_9490001 chr2L_9490001 RAL-765 143 chr2L 9716454 9716473 chr2L 9716542 9716561 9 88 8.0 4.5 6.2 1.2 107 chr2L 9716454 3` UTR Nckx30C - chr2L 9716508 3` UTR Nckx30C - chr2L 9716561 3` UTR Nckx30C - chr2L_9_9715001 chr2L_9715001 RAL-765 144 chr2L 9716476 9716483 chr2L 9716537 9716571 4 81 5.0 4.0 4.5 0.7 95 chr2L 9716476 3` UTR Nckx30C - chr2L 9716524 3` UTR Nckx30C - chr2L 9716571 3` UTR Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-765 145 chr2L 9730975 9731003 chr2L 9731058 9731086 8 82 4.0 2.0 3.0 2.0 111 chr2L 9730975 intron Nckx30C - chr2L 9731030 intron Nckx30C - chr2L 9731086 intron Nckx30C - chr2L_8_9730001 chr2L_9730001 RAL-765 146 chr2L 9829578 9829600 chr2L 9829780 9829802 6 202 2.5 2.0 2.2 1.9 224 chr2L 9829578 intron nAChRalpha6 - chr2L 9829690 intron nAChRalpha6 - chr2L 9829802 intron nAChRalpha6 - chr2L_6_9825001 chr2L_9825001 RAL-765 147 chr2L 9881007 9881027 chr2L 9881085 9881104 6 77 3.0 2.0 2.5 1.7 97 chr2L 9881007 intron nAChRalpha6 - chr2L 9881056 intron nAChRalpha6 - chr2L 9881104 intron nAChRalpha6 - chr2L_6_9880001 chr2L_9880001 RAL-765 148 chr2L 9892511 9892529 chr2L 9892586 9892605 4 76 0.5 3.5 2.0 1.3 94 chr2L 9892511 intron mtDNA-helicase - chr2L 9892558 intron mtDNA-helicase - chr2L 9892605 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-765 149 chr2L 9973727 9973758 chr2L 9980845 9980876 HMS-Beagle 10 7118 5.5 6.0 5.8 1.5 7149 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-765 150 chr2L 9986354 9986381 chr2L 9986448 9986471 8 94 2.0 4.5 3.2 1.9 117 chr2L 9986354 intron bib + chr2L 9986412 intron bib + chr2L 9986471 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-765 151 chr2L 10045416 10045434 chr2L 10045496 10045514 5 79 3.5 6.0 4.8 0.9 98 chr2L 10045416 intergenic not near genes chr2L 10045465 intergenic not near genes chr2L 10045514 intergenic not near genes chr2L_5_10045001 chr2L_10045001 RAL-765 152 chr2L 10051724 10051753 chr2L 10051809 10051831 15 82 2.5 3.0 2.8 3.9 107 chr2L 10051724 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051831 5` UTR CR44874 + chr2L_15_10050001 chr2L_10050001 RAL-765 153 chr2L 10084443 10084468 chr2L 10084833 10084859 7 390 1.5 2.0 1.8 2.5 416 chr2L 10084443 intron CG44153 - chr2L 10084651 intron CG44153 - chr2L 10084859 intron CG44153 - chr2L_7_10080001 chr2L_10080001 RAL-765 154 chr2L 10156332 10156353 chr2L 10163802 10163822 blood 8 7470 2.5 3.0 2.8 2.1 7490 chr2L 10156332 intron,3` UTR CG44153 -,CG4839 + chr2L 10160077 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-765 155 chr2L 10474384 10474410 chr2L 10474465 10474488 5 80 3.0 1.0 2.0 1.7 104 chr2L 10474384 intergenic RluA-1 - chr2L 10474436 intergenic RluA-1 - chr2L 10474488 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-765 156 chr2L 10480312 10480333 chr2L 10480390 10480411 7 78 1.5 0.0 0.8 3.9 99 chr2L 10480312 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480411 intron RluA-2 + chr2L_7_10480001 chr2L_10480001 RAL-765 157 chr2L 10490283 10490295 chr2L 10490365 10490377 4 82 4.5 3.0 3.8 0.8 94 chr2L 10490283 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490330 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490377 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_4_10490001 chr2L_10490001 RAL-765 158 chr2L 10580795 10580822 chr2L 10580876 10580903 4 81 0.5 0.5 0.5 2.7 108 chr2L 10580795 intron Trim9 + chr2L 10580849 intron Trim9 + chr2L 10580903 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-765 159 chr2L 10631210 10631239 chr2L 10631341 10631371 8 132 1.0 0.0 0.5 5.3 161 chr2L 10631210 intron CG7329 - chr2L 10631290 intron CG7329 - chr2L 10631371 intron CG7329 - chr2L_8_10630001 chr2L_10630001 RAL-765 160 chr2L 10673747 10673768 chr2L 10673829 10673850 5 81 2.0 1.0 1.5 2.0 103 chr2L 10673747 intergenic not near genes chr2L 10673798 intergenic not near genes chr2L 10673850 intergenic not near genes chr2L_5_10670001 chr2L_10670001 RAL-765 161 chr2L 10688541 10688558 chr2L 10688617 10688634 4 76 0.0 1.5 0.8 2.2 93 chr2L 10688541 intergenic CG7294 - chr2L 10688588 intergenic CG7294 - chr2L 10688634 intergenic CG7294 - chr2L_4_10685001 chr2L_10685001 RAL-765 162 chr2L 10785058 10785094 chr2L 10785134 10785170 13 74 3.5 3.5 3.5 2.9 112 chr2L 10785058 intron CG31869 - chr2L 10785114 intron CG31869 - chr2L 10785170 intron CG31869 - chr2L_13_10785001 chr2L_10785001 RAL-765 163 chr2L 10813675 10813694 chr2L 10813823 10813843 5 150 2.5 1.5 2.0 1.7 168 chr2L 10813675 intron Nos - chr2L 10813759 intron Nos - chr2L 10813843 intron Nos - chr2L_5_10810001 chr2L_10810001 RAL-765 164 chr2L 10862845 10862877 chr2L 10864459 10864491 Rt1c 6 1610 1.5 5.5 3.5 1.3 1646 chr2L 10862845 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864491 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-765 165 chr2L 10946949 10946977 chr2L 10956164 10956192 roo 9 9215 3.0 7.5 5.2 1.5 9243 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-765 166 chr2L 11142515 11142538 chr2L 11142597 11142619 7 82 1.5 1.5 1.5 2.8 104 chr2L 11142515 intron Gyc32E - chr2L 11142567 intron Gyc32E - chr2L 11142619 intron Gyc32E - chr2L_7_11140001 chr2L_11140001 RAL-765 167 chr2L 11214846 11214871 chr2L 11215075 11215094 7 228 0.0 0.0 0.0 7.0 248 chr2L 11214846 intron ab + chr2L 11214970 intron ab + chr2L 11215094 intron ab + chr2L_7_11210001 chr2L_11210001 RAL-765 168 chr2L 11401536 11401562 chr2L 11401616 11401643 8 80 3.0 3.5 3.2 1.9 107 chr2L 11401536 intergenic not near genes chr2L 11401590 intergenic not near genes chr2L 11401643 intergenic not near genes chr2L_8_11400001 chr2L_11400001 RAL-765 169 chr2L 11413292 11413317 chr2L 11413416 11413440 7 124 2.5 2.0 2.2 2.2 148 chr2L 11413292 intergenic not near genes chr2L 11413366 intergenic not near genes chr2L 11413440 intergenic not near genes chr2L_7_11410001 chr2L_11410001 RAL-765 170 chr2L 11418654 11418688 chr2L 11418733 11418764 9 78 0.5 2.0 1.2 4.1 110 chr2L 11418654 intergenic not near genes chr2L 11418709 intergenic not near genes chr2L 11418764 intergenic not near genes chr2L_9_11415001 chr2L_11415001 RAL-765 171 chr2L 11458944 11458969 chr2L 11459060 11459085 5 116 2.5 1.0 1.8 1.8 141 chr2L 11458944 intergenic not near genes chr2L 11459014 intergenic not near genes chr2L 11459085 intergenic not near genes chr2L_5_11455001 chr2L_11455001 RAL-765 172 chr2L 11499717 11499746 chr2L 11499809 11499838 9 93 2.5 3.5 3.0 2.2 121 chr2L 11499717 intergenic not near genes chr2L 11499778 intergenic not near genes chr2L 11499838 intergenic not near genes chr2L_9_11495001 chr2L_11495001 RAL-765 173 chr2L 11563646 11563668 chr2L 11568845 11568872 copia 8 5203 3.5 3.0 3.2 1.9 5226 chr2L 11563646 intergenic not near genes chr2L 11566259 intergenic not near genes chr2L 11568872 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-765 174 chr2L 11585233 11585238 chr2L 11585309 11585314 4 76 0.0 4.0 2.0 1.3 81 chr2L 11585233 intron kek2 + chr2L 11585274 intron kek2 + chr2L 11585314 intron kek2 + chr2L_4_11585001 chr2L_11585001 RAL-765 175 chr2L 11608924 11608957 chr2L 11609006 11609039 8 82 1.5 1.0 1.2 3.6 115 chr2L 11608924 intron kek2 + chr2L 11608982 intron kek2 + chr2L 11609039 intron kek2 + chr2L_8_11605001 chr2L_11605001 RAL-765 176 chr2L 11614051 11614085 chr2L 11615546 11615580 hopper2 5 1495 2.5 0.0 1.2 2.3 1529 chr2L 11614051 intron kek2 + chr2L 11614816 intron kek2 + chr2L 11615580 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-765 177 chr2L 11637993 11638024 chr2L 11638069 11638100 4 76 2.5 2.0 2.2 1.2 107 chr2L 11637993 intergenic not near genes chr2L 11638046 intergenic not near genes chr2L 11638100 intergenic not near genes chr2L_4_11635001 chr2L_11635001 RAL-765 178 chr2L 11659303 11659328 chr2L 11659382 11659407 7 79 1.0 2.0 1.5 2.8 104 chr2L 11659303 intergenic not near genes chr2L 11659355 intergenic not near genes chr2L 11659407 intergenic not near genes chr2L_7_11655001 chr2L_11655001 RAL-765 179 chr2L 11713506 11713529 chr2L 11720974 11720997 blood 6 7468 1.5 1.0 1.2 2.7 7491 chr2L 11713506 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720997 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-765 180 chr2L 11756323 11756328 chr2L 11756415 11756422 5 93 9.5 1.0 5.2 0.8 99 chr2L 11756323 intergenic not near genes chr2L 11756372 intergenic not near genes chr2L 11756422 intergenic not near genes chr2L_5_11755001 chr2L_11755001 RAL-765 181 chr2L 11879334 11879356 chr2L 11879505 11879528 4 173 5.0 1.5 3.2 1.0 194 chr2L 11879334 intron Pde1c - chr2L 11879431 intron Pde1c - chr2L 11879528 intron Pde1c - chr2L_4_11875001 chr2L_11875001 RAL-765 182 chr2L 11946994 11947022 chr2L 11947102 11947130 11 106 2.5 2.0 2.2 3.4 136 chr2L 11946994 3` UTR Cry + chr2L 11947062 3` UTR Cry + chr2L 11947130 3` UTR Cry + chr2L_11_11945001 chr2L_11945001 RAL-765 183 chr2L 12085654 12085683 chr2L 12085730 12085760 18 76 10.0 6.0 8.0 2.0 106 chr2L 12085654 5` UTR,5` UTR prd -,CR44592 + chr2L 12085707 5` UTR,5` UTR prd -,CR44592 + chr2L 12085760 5` UTR,5` UTR prd -,CR44592 + chr2L_18_12085001 chr2L_12085001 RAL-765 184 chr2L 12153940 12153950 chr2L 12154017 12154026 4 77 3.0 1.0 2.0 1.3 86 chr2L 12153940 exon CG31760 + chr2L 12153983 intron CG31760 + chr2L 12154026 intron CG31760 + chr2L_4_12150001 chr2L_12150001 RAL-765 185 chr2L 12214079 12214093 chr2L 12214170 12214190 6 99 1.0 2.5 1.8 2.1 111 chr2L 12214079 intron aret + chr2L 12214134 intron aret + chr2L 12214190 intron aret + chr2L_6_12210001 chr2L_12210001 RAL-765 186 chr2L 12254026 12254051 chr2L 12254118 12254143 5 92 1.0 0.0 0.5 3.3 117 chr2L 12254026 intron aret + chr2L 12254084 intron aret + chr2L 12254143 intron aret + chr2L_5_12250001 chr2L_12250001 RAL-765 187 chr2L 12305411 12305438 chr2L 12305499 12305526 9 88 1.5 2.0 1.8 3.2 115 chr2L 12305411 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_9_12305001 chr2L_12305001 RAL-765 188 chr2L 12398670 12398683 chr2L 12398759 12398771 6 89 11.5 10.0 10.8 0.5 101 chr2L 12398670 exon Pkd2 + chr2L 12398720 exon Pkd2 + chr2L 12398771 exon Pkd2 + chr2L_6_12395001 chr2L_12395001 RAL-765 189 chr2L 12454140 12454153 chr2L 12454220 12454233 6 80 2.0 5.0 3.5 1.3 93 chr2L 12454140 intergenic not near genes chr2L 12454186 intergenic not near genes chr2L 12454233 intergenic not near genes chr2L_6_12450001 chr2L_12450001 RAL-765 190 chr2L 12474955 12474962 chr2L 12475133 12475140 4 178 1.0 3.5 2.2 1.2 185 chr2L 12474955 intron bun - chr2L 12475048 intron bun - chr2L 12475140 intron bun - chr2L_4_12475001 chr2L_12475001 RAL-765 191 chr2L 12487888 12487918 chr2L 12487968 12487997 7 80 3.0 2.5 2.8 1.8 109 chr2L 12487888 intron bun - chr2L 12487942 intron bun - chr2L 12487997 intron bun - chr2L_7_12485001 chr2L_12485001 RAL-765 192 chr2L 12529416 12529447 chr2L 12529492 12529522 4 75 3.0 1.5 2.2 1.2 106 chr2L 12529416 intron bun - chr2L 12529469 intron bun - chr2L 12529522 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-765 193 chr2L 12653032 12653062 chr2L 12653108 12653139 16 77 2.0 4.5 3.2 3.8 107 chr2L 12653032 intergenic not near genes chr2L 12653086 intergenic not near genes chr2L 12653139 intergenic not near genes chr2L_16_12650001 chr2L_12650001 RAL-765 194 chr2L 12728934 12728949 chr2L 12729174 12729189 pogo 6 240 1.5 7.5 4.5 1.1 255 chr2L 12728934 intron MRP + chr2L 12729062 intron MRP + chr2L 12729189 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-765 195 chr2L 12731062 12731084 chr2L 12735829 12735851 F-element 4 4767 2.0 2.0 2.0 1.3 4789 chr2L 12731062 intron MRP + chr2L 12733456 intron MRP + chr2L 12735851 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-765 196 chr2L 12739172 12739205 chr2L 12743952 12743986 Doc 5 4781 2.5 3.5 3.0 1.2 4814 chr2L 12739172 exon MRP + chr2L 12741579 intron MRP + chr2L 12743986 exon MRP + chr2L_5_12740001 chr2L_12740001 RAL-765 197 chr2L 12751312 12751326 chr2L 12751394 12751409 4 82 4.0 1.0 2.5 1.1 97 chr2L 12751312 intergenic not near genes chr2L 12751360 intergenic not near genes chr2L 12751409 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-765 198 chr2L 12791606 12791640 chr2L 12795279 12795315 F-element 7 3674 1.5 0.5 1.0 3.5 3709 chr2L 12791606 intergenic not near genes chr2L 12793460 intergenic not near genes chr2L 12795315 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-765 199 chr2L 12894022 12894054 chr2L 12895488 12895517 hobo 4 1466 3.5 3.0 3.2 1.0 1495 chr2L 12894022 intergenic not near genes chr2L 12894770 intergenic not near genes chr2L 12895517 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-765 200 chr2L 12905477 12905509 chr2L 12905560 12905593 4 84 2.0 1.0 1.5 1.6 116 chr2L 12905477 intergenic not near genes chr2L 12905535 intergenic not near genes chr2L 12905593 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-765 201 chr2L 13097236 13097255 chr2L 13097425 13097444 8 189 1.0 1.5 1.2 3.6 208 chr2L 13097236 5` UTR CR45447 + chr2L 13097340 intergenic CR45447 + chr2L 13097444 intergenic CR45447 + chr2L_8_13095001 chr2L_13095001 RAL-765 202 chr2L 13211140 13211175 chr2L 13211227 13211262 16 86 3.5 2.0 2.8 4.2 122 chr2L 13211140 exon CG15482 - chr2L 13211201 exon CG15482 - chr2L 13211262 exon CG15482 - chr2L_16_13210001 chr2L_13210001 RAL-765 203 chr2L 13231883 13231915 chr2L 13231994 13232022 4 110 2.0 2.0 2.0 1.3 139 chr2L 13231883 intergenic Prosalpha6T + chr2L 13231952 intergenic Prosalpha6T + chr2L 13232022 intergenic Prosalpha6T + chr2L_4_13230001 chr2L_13230001 RAL-765 204 chr2L 13405650 13405679 chr2L 13410447 13410476 Doc 8 4797 3.5 1.0 2.2 2.5 4826 chr2L 13405650 exon CG7110 + chr2L 13408063 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-765 205 chr2L 13449462 13449495 chr2L 13456896 13456931 Quasimodo 8 7436 2.0 3.0 2.5 2.3 7469 chr2L 13449462 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456931 intron CG42784 + chr2L_8_13450001 chr2L_13450001 RAL-765 206 chr2L 13540669 13540690 chr2L 13540748 13540769 6 79 6.0 2.0 4.0 1.2 100 chr2L 13540669 intron B4 - chr2L 13540719 intron B4 - chr2L 13540769 intron,5` UTR B4 -,CG16852 + chr2L_6_13540001 chr2L_13540001 RAL-765 207 chr2L 13549170 13549193 chr2L 13549248 13549271 7 76 3.5 4.5 4.0 1.4 101 chr2L 13549170 5` UTR B4 - chr2L 13549220 5` UTR B4 - chr2L 13549271 5` UTR B4 - chr2L_7_13545001 chr2L_13545001 RAL-765 208 chr2L 13622139 13622169 chr2L 13622238 13622268 7 98 2.0 0.0 1.0 3.5 129 chr2L 13622139 intron kuz + chr2L 13622204 intron kuz + chr2L 13622268 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-765 209 chr2L 13693007 13693037 chr2L 13693083 13693113 7 76 1.0 2.5 1.8 2.5 106 chr2L 13693007 intron CG31814 - chr2L 13693060 intron CG31814 - chr2L 13693113 intron CG31814 - chr2L_7_13690001 chr2L_13690001 RAL-765 210 chr2L 13725752 13725767 chr2L 13725839 13725854 5 87 0.0 4.0 2.0 1.7 102 chr2L 13725752 intergenic not near genes chr2L 13725803 intergenic not near genes chr2L 13725854 intergenic not near genes chr2L_5_13725001 chr2L_13725001 RAL-765 211 chr2L 13761814 13761834 chr2L 13762908 13762945 Doc 5 1107 3.0 0.5 1.8 1.8 1131 chr2L 13761814 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-765 212 chr2L 13853093 13853112 chr2L 13862242 13862262 roo 6 9150 2.0 2.0 2.0 2.0 9169 chr2L 13853093 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862262 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-765 213 chr2L 13918812 13918835 chr2L 13918898 13918922 8 87 2.5 2.0 2.2 2.5 110 chr2L 13918812 intron Ance-3 + chr2L 13918867 intron Ance-3 + chr2L 13918922 intron Ance-3 + chr2L_8_13915001 chr2L_13915001 RAL-765 214 chr2L 14056808 14056837 chr2L 14056894 14056923 8 86 0.5 1.5 1.0 4.0 115 chr2L 14056808 intron nAChRalpha5 + chr2L 14056866 intron nAChRalpha5 + chr2L 14056923 intron nAChRalpha5 + chr2L_8_14055001 chr2L_14055001 RAL-765 215 chr2L 14126664 14126666 chr2L 14126713 14126741 5 64 2.5 3.0 2.8 1.3 77 chr2L 14126664 intergenic not near genes chr2L 14126702 intergenic not near genes chr2L 14126741 intergenic not near genes chr2L_5_14125001 chr2L_14125001 RAL-765 216 chr2L 14148675 14148692 chr2L 14148793 14148810 6 118 2.0 1.5 1.8 2.1 135 chr2L 14148675 intron CG17341 + chr2L 14148742 intron CG17341 + chr2L 14148810 intron CG17341 + chr2L_6_14145001 chr2L_14145001 RAL-765 217 chr2L 14180062 14180083 chr2L 14180138 14180159 6 76 1.5 1.5 1.5 2.4 97 chr2L 14180062 intron CG43333 - chr2L 14180110 intron CG43333 - chr2L 14180159 intron CG43333 - chr2L_6_14180001 chr2L_14180001 RAL-765 218 chr2L 14442256 14442278 chr2L 14442334 14442351 7 77 4.0 1.0 2.5 2.0 95 chr2L 14442256 intergenic not near genes chr2L 14442304 intergenic not near genes chr2L 14442351 intergenic not near genes chr2L_7_14440001 chr2L_14440001 RAL-765 219 chr2L 14549164 14549178 chr2L 14549240 14549253 4 76 1.0 5.0 3.0 1.0 89 chr2L 14549164 intergenic CG4218 - chr2L 14549208 intergenic CG4218 - chr2L 14549253 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-765 220 chr2L 14552591 14552603 chr2L 14552676 14552687 4 85 7.0 2.0 4.5 0.7 96 chr2L 14552591 intergenic not near genes chr2L 14552639 intergenic not near genes chr2L 14552687 intergenic not near genes chr2L_4_14550001 chr2L_14550001 RAL-765 221 chr2L 14588385 14588415 chr2L 14588539 14588569 6 154 2.0 2.5 2.2 1.9 184 chr2L 14588385 intergenic CG42680 - chr2L 14588477 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-765 222 chr2L 14803883 14803913 chr2L 14809086 14809114 copia 9 5202 0.0 2.5 1.2 4.1 5231 chr2L 14803883 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-765 223 chr2L 14840977 14841006 chr2L 14841063 14841093 7 87 2.5 2.5 2.5 2.0 116 chr2L 14840977 3` UTR CR43805 - chr2L 14841035 3` UTR CR43805 - chr2L 14841093 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-765 224 chr2L 14889958 14889986 chr2L 14890383 14890411 jockey 4 425 2.5 3.5 3.0 1.0 453 chr2L 14889958 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890411 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-765 225 chr2L 15000860 15000876 chr2L 15000986 15001003 5 126 8.0 8.5 8.2 0.5 143 chr2L 15000860 intergenic not near genes chr2L 15000932 intergenic not near genes chr2L 15001003 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-765 226 chr2L 15003557 15003565 chr2L 15003631 15003649 4 81 1.0 6.0 3.5 0.9 92 chr2L 15003557 intergenic not near genes chr2L 15003603 intergenic not near genes chr2L 15003649 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-765 227 chr2L 15013172 15013178 chr2L 15013275 15013287 4 107 0.0 2.0 1.0 2.0 115 chr2L 15013172 intergenic not near genes chr2L 15013230 intergenic not near genes chr2L 15013287 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-765 228 chr2L 15026040 15026052 chr2L 15026100 15026133 4 76 3.5 0.5 2.0 1.3 93 chr2L 15026040 exon GABA-B-R1 + chr2L 15026086 intron GABA-B-R1 + chr2L 15026133 intron GABA-B-R1 + chr2L_4_15025001 chr2L_15025001 RAL-765 229 chr2L 15066579 15066609 chr2L 15066672 15066702 9 90 2.5 4.0 3.2 2.1 123 chr2L 15066579 intron,intron vas +,vig - chr2L 15066640 intron,intron vas +,vig - chr2L 15066702 intron,intron vas +,vig - chr2L_9_15065001 chr2L_15065001 RAL-765 230 chr2L 15082660 15082687 chr2L 15082754 15082781 6 94 1.5 1.5 1.5 2.4 121 chr2L 15082660 intron CG15270 + chr2L 15082720 intron CG15270 + chr2L 15082781 intron CG15270 + chr2L_6_15080001 chr2L_15080001 RAL-765 231 chr2L 15313740 15313777 chr2L 15313861 15313898 11 119 2.5 3.0 2.8 2.9 158 chr2L 15313740 intergenic not near genes chr2L 15313819 intergenic not near genes chr2L 15313898 intergenic not near genes chr2L_11_15310001 chr2L_15310001 RAL-765 232 chr2L 15343543 15343565 chr2L 15343628 15343650 4 85 2.0 0.0 1.0 2.0 107 chr2L 15343543 intergenic not near genes chr2L 15343596 intergenic not near genes chr2L 15343650 intergenic not near genes chr2L_4_15340001 chr2L_15340001 RAL-765 233 chr2L 15446051 15446081 chr2L 15453520 15453550 blood 6 7469 2.0 2.0 2.0 2.0 7499 chr2L 15446051 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453550 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-765 234 chr2L 15500831 15500855 chr2L 15500908 15500932 6 77 0.5 3.5 2.0 2.0 101 chr2L 15500831 intron lace + chr2L 15500882 intron lace + chr2L 15500932 intron lace + chr2L_6_15500001 chr2L_15500001 RAL-765 235 chr2L 15956028 15956041 chr2L 15957495 15957508 hobo 7 1467 3.5 1.5 2.5 2.0 1480 chr2L 15956028 intron beat-Ib - chr2L 15956768 intron beat-Ib - chr2L 15957508 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-765 236 chr2L 16069274 16069295 chr2L 16069351 16069377 8 80 2.0 1.5 1.8 2.9 103 chr2L 16069274 intron beat-Ia + chr2L 16069326 intron beat-Ia + chr2L 16069377 intron beat-Ia + chr2L_8_16065001 chr2L_16065001 RAL-765 237 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 20 145889 16.5 13.0 14.8 1.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_20_16140001 chr2L_16140001 RAL-765 238 chr2L 16098931 16098947 chr2L 16099019 16099035 4 87 1.0 2.0 1.5 1.6 104 chr2L 16098931 intergenic not near genes chr2L 16098983 intergenic not near genes chr2L 16099035 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-765 239 chr2L 16141170 16141186 chr2L 16146377 16146393 copia 8 5207 1.0 4.5 2.8 2.1 5223 chr2L 16141170 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-765 240 chr2L 16173966 16173993 chr2L 16174052 16174079 8 86 1.0 3.0 2.0 2.7 113 chr2L 16173966 intron Ca-alpha1D + chr2L 16174022 intron Ca-alpha1D + chr2L 16174079 exon Ca-alpha1D + chr2L_8_16170001 chr2L_16170001 RAL-765 241 chr2L 16208529 16208561 chr2L 16208617 16208650 4 88 0.0 0.5 0.2 3.3 121 chr2L 16208529 intergenic not near genes chr2L 16208590 intergenic not near genes chr2L 16208650 intergenic not near genes chr2L_4_16205001 chr2L_16205001 RAL-765 242 chr2L 7862104 7862104 chr2L 16217660 16217660 4 8355556 17.0 13.0 15.0 0.2 8355556 chr2L 7862104 intergenic not near genes chr2L 12039882 exon CG6766 - chr2L 16217660 intergenic not near genes chr2L_4_12035001 chr2L_12035001 RAL-765 243 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 16.5 13.0 14.8 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-765 244 chr2L 16226184 16226214 chr2L 16226271 16226301 10 86 2.0 3.5 2.8 2.6 117 chr2L 16226184 intergenic not near genes chr2L 16226242 intergenic not near genes chr2L 16226301 intergenic not near genes chr2L_10_16225001 chr2L_16225001 RAL-765 245 chr2L 16384785 16384802 chr2L 16384862 16384879 4 77 1.0 0.0 0.5 2.7 94 chr2L 16384785 intergenic not near genes chr2L 16384832 intergenic not near genes chr2L 16384879 intergenic not near genes chr2L_4_16380001 chr2L_16380001 RAL-765 246 chr2L 16511962 16511990 chr2L 16519076 16519104 HMS-Beagle 7 7114 2.0 1.5 1.8 2.5 7142 chr2L 16511962 intron CG5953 - chr2L 16515533 intron CG5953 - chr2L 16519104 intron CG5953 - chr2L_7_16515001 chr2L_16515001 RAL-765 247 chr2L 16645220 16645231 chr2L 16645664 16645675 7 444 0.5 5.0 2.8 1.8 455 chr2L 16645220 intron CG42389 + chr2L 16645448 intron CG42389 + chr2L 16645675 intron CG42389 + chr2L_7_16645001 chr2L_16645001 RAL-765 248 chr2L 16693914 16693942 chr2L 16693995 16694023 7 81 0.5 1.5 1.0 3.5 109 chr2L 16693914 intron grp + chr2L 16693968 intron grp + chr2L 16694023 intron grp + chr2L_7_16690001 chr2L_16690001 RAL-765 249 chr2L 16721444 16721465 chr2L 16721534 16721557 7 92 2.5 2.0 2.2 2.2 113 chr2L 16721444 intron Cyt-c-p + chr2L 16721500 intron Cyt-c-p + chr2L 16721557 intron Cyt-c-p + chr2L_7_16720001 chr2L_16720001 RAL-765 250 chr2L 16764976 16765002 chr2L 16765056 16765080 4 80 0.0 1.5 0.8 2.2 104 chr2L 16764976 intergenic not near genes chr2L 16765028 intergenic not near genes chr2L 16765080 intergenic not near genes chr2L_4_16765001 chr2L_16765001 RAL-765 251 chr2L 16796085 16796109 chr2L 16796186 16796210 5 101 0.0 2.0 1.0 2.5 125 chr2L 16796085 intergenic Ugt36Ba + chr2L 16796148 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796210 intergenic Ugt36Ba +,Ugt36Bb + chr2L_5_16795001 chr2L_16795001 RAL-765 252 chr2L 16952137 16952150 chr2L 16952208 16952236 5 83 0.0 0.5 0.2 4.2 99 chr2L 16952137 intergenic not near genes chr2L 16952186 intergenic not near genes chr2L 16952236 intergenic not near genes chr2L_5_16950001 chr2L_16950001 RAL-765 253 chr2L 17053281 17053309 chr2L 17053691 17053719 7 410 1.5 3.5 2.5 2.0 438 chr2L 17053281 intergenic not near genes chr2L 17053500 intergenic not near genes chr2L 17053719 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-765 254 chr2L 17167570 17167596 chr2L 17167809 17167837 pogo 4 240 1.5 1.0 1.2 1.8 267 chr2L 17167570 intron,intron CG34106 +,beat-IIIa + chr2L 17167704 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-765 255 chr2L 17273189 17273229 chr2L 17277972 17278011 F-element 11 4783 1.5 1.0 1.2 5.0 4822 chr2L 17273189 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278011 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-765 256 chr2L 17327907 17327923 chr2L 17327993 17328009 5 86 2.0 3.0 2.5 1.4 102 chr2L 17327907 intergenic not near genes chr2L 17327958 intergenic not near genes chr2L 17328009 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-765 257 chr2L 17380452 17380483 chr2L 17380722 17380750 7 269 0.5 0.0 0.2 5.8 298 chr2L 17380452 intron Lrch - chr2L 17380601 intron Lrch - chr2L 17380750 intron Lrch - chr2L_7_17380001 chr2L_17380001 RAL-765 258 chr2L 17432014 17432043 chr2L 17432120 17432150 1360 6 107 0.0 0.5 0.2 5.0 136 chr2L 17432014 intron Dif - chr2L 17432082 intron Dif - chr2L 17432150 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-765 259 chr2L 17608909 17608930 chr2L 17609173 17609200 5 270 0.0 1.5 0.8 2.8 291 chr2L 17608909 intergenic not near genes chr2L 17609054 intergenic not near genes chr2L 17609200 intergenic not near genes chr2L_5_17605001 chr2L_17605001 RAL-765 260 chr2L 17637170 17637201 chr2L 17637255 17637286 7 85 1.0 0.5 0.8 3.9 116 chr2L 17637170 intergenic not near genes chr2L 17637228 intergenic not near genes chr2L 17637286 intergenic not near genes chr2L_7_17635001 chr2L_17635001 RAL-765 261 chr2L 17819932 17819948 chr2L 17825135 17825151 copia 6 5202 1.5 4.0 2.8 1.6 5219 chr2L 17819932 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825151 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-765 262 chr2L 17842287 17842311 chr2L 17842371 17842395 5 84 2.0 2.0 2.0 1.7 108 chr2L 17842287 intron CadN2 - chr2L 17842341 intron CadN2 - chr2L 17842395 intron CadN2 - chr2L_5_17840001 chr2L_17840001 RAL-765 263 chr2L 17903225 17903255 chr2L 17903482 17903513 6 257 1.0 4.0 2.5 1.7 288 chr2L 17903225 intergenic CR45333 - chr2L 17903369 intergenic CR45333 - chr2L 17903513 intergenic CR45333 - chr2L_6_17900001 chr2L_17900001 RAL-765 264 chr2L 17951952 17951975 chr2L 17953417 17953442 hobo 6 1467 4.0 2.0 3.0 1.5 1490 chr2L 17951952 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953442 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-765 265 chr2L 17989994 17990026 chr2L 17990070 17990102 6 76 3.5 2.5 3.0 1.5 108 chr2L 17989994 intergenic Prosbeta5R2 + chr2L 17990048 intergenic Prosbeta5R2 + chr2L 17990102 intergenic Prosbeta5R2 + chr2L_6_17990001 chr2L_17990001 RAL-765 266 chr2L 17986755 17986777 chr2L 17991483 17991506 6 4728 16.5 12.5 14.5 0.4 4751 chr2L 17986755 exon CG5681 + chr2L 17989130 intergenic not near genes chr2L 17991506 3` UTR Prosbeta5R2 + chr2L_6_17985001 chr2L_17985001 RAL-765 267 chr2L 18090677 18090704 chr2L 18090765 18090786 10 85 3.0 2.5 2.8 2.6 109 chr2L 18090677 intergenic CG15153 - chr2L 18090732 intergenic CG15153 - chr2L 18090786 3` UTR CG15153 - chr2L_10_18090001 chr2L_18090001 RAL-765 268 chr2L 18111243 18111257 chr2L 18111334 18111347 4 91 2.5 3.0 2.8 1.1 104 chr2L 18111243 intergenic not near genes chr2L 18111295 intergenic not near genes chr2L 18111347 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-765 269 chr2L 18145242 18145266 chr2L 18145321 18145334 5 76 1.5 1.5 1.5 2.0 92 chr2L 18145242 intron,5` UTR Socs36E -,CR44478 + chr2L 18145288 intron,5` UTR Socs36E -,CR44478 + chr2L 18145334 intron,5` UTR Socs36E -,CR44478 + chr2L_5_18145001 chr2L_18145001 RAL-765 270 chr2L 18218614 18218629 chr2L 18218702 18218717 7 88 2.0 1.0 1.5 2.8 103 chr2L 18218614 intron CG42750 - chr2L 18218666 intron CG42750 - chr2L 18218717 intron CG42750 - chr2L_7_18215001 chr2L_18215001 RAL-765 271 chr2L 18239960 18239966 chr2L 18240043 18240049 4 83 4.5 0.0 2.2 1.2 89 chr2L 18239960 intron CG42750 - chr2L 18240004 intron CG42750 - chr2L 18240049 intron CG42750 - chr2L_4_18240001 chr2L_18240001 RAL-765 272 chr2L 18306765 18306791 chr2L 18307122 18307147 7 357 3.0 2.5 2.8 1.8 382 chr2L 18306765 intergenic not near genes chr2L 18306956 intergenic not near genes chr2L 18307147 intergenic not near genes chr2L_7_18305001 chr2L_18305001 RAL-765 273 chr2L 18334626 18334644 chr2L 18334711 18334728 4 84 0.5 2.0 1.2 1.8 102 chr2L 18334626 intron Fas3 + chr2L 18334677 intron Fas3 + chr2L 18334728 intron Fas3 + chr2L_4_18330001 chr2L_18330001 RAL-765 274 chr2L 18408022 18408043 chr2L 18412806 18412827 Doc 5 4784 1.5 0.0 0.8 2.8 4805 chr2L 18408022 intergenic not near genes chr2L 18410424 intergenic not near genes chr2L 18412827 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-765 275 chr2L 18423853 18423863 chr2L 18423944 18423954 4 91 1.0 0.0 0.5 2.7 101 chr2L 18423853 intergenic not near genes chr2L 18423904 intergenic not near genes chr2L 18423954 intergenic not near genes chr2L_4_18420001 chr2L_18420001 RAL-765 276 chr2L 18449389 18449412 chr2L 18449490 18449513 7 100 2.0 2.5 2.2 2.2 124 chr2L 18449389 intergenic bsf -,ncm - chr2L 18449451 intergenic bsf -,ncm - chr2L 18449513 intergenic bsf - chr2L_7_18445001 chr2L_18445001 RAL-765 277 chr2L 18561558 18561565 chr2L 18561659 18561666 5 101 2.5 1.5 2.0 1.7 108 chr2L 18561558 intron Pde11 - chr2L 18561612 intron Pde11 - chr2L 18561666 intron Pde11 - chr2L_5_18560001 chr2L_18560001 RAL-765 278 chr2L 16217660 16217660 chr2L 18622421 18622719 16 2405039 14.0 9.0 11.5 1.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_16_17420001 chr2L_17420001 RAL-765 279 chr2L 18816838 18816863 chr2L 18817043 18817069 6 205 27.0 21.0 24.0 0.2 231 chr2L 18816838 intergenic not near genes chr2L 18816954 intergenic not near genes chr2L 18817069 intergenic not near genes chr2L_6_18815001 chr2L_18815001 RAL-765 280 chr2L 18889942 18889975 chr2L 18890019 18890052 10 76 1.0 1.5 1.2 4.5 110 chr2L 18889942 intergenic not near genes chr2L 18889997 intergenic not near genes chr2L 18890052 intergenic not near genes chr2L_10_18885001 chr2L_18885001 RAL-765 281 chr2L 18898400 18898423 chr2L 18898482 18898505 7 82 4.5 2.5 3.5 1.6 105 chr2L 18898400 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_7_18895001 chr2L_18895001 RAL-765 282 chr2L 18921435 18921464 chr2L 18921516 18921545 6 81 1.0 4.0 2.5 1.7 110 chr2L 18921435 intron ssp3 - chr2L 18921490 intron ssp3 - chr2L 18921545 intron ssp3 - chr2L_6_18920001 chr2L_18920001 RAL-765 283 chr2L 19024096 19024096 chr2L 21768291 21768294 6 2744197 21.0 12.0 16.5 0.3 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_6_20395001 chr2L_20395001 RAL-765 284 chr2L 19147377 19147403 chr2L 19154412 19154437 297 5 7035 0.5 2.0 1.2 2.3 7060 chr2L 19147377 intron brat + chr2L 19150907 intron brat + chr2L 19154437 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-765 285 chr2L 19182971 19183005 chr2L 19183050 19183084 11 79 1.0 1.5 1.2 5.0 113 chr2L 19182971 intergenic CR17567 -,CG42688 - chr2L 19183028 intergenic CR17567 -,CG42688 - chr2L 19183084 3` UTR CR17567 - chr2L_11_19180001 chr2L_19180001 RAL-765 286 chr2L 19183341 19183368 chr2L 19183421 19183448 9 80 4.0 1.5 2.8 2.4 107 chr2L 19183341 intron CR17567 - chr2L 19183394 3` UTR CR17567 - chr2L 19183448 3` UTR CR17567 - chr2L_9_19180001 chr2L_19180001 RAL-765 287 chr2L 19309620 19309639 chr2L 19309700 19309719 6 80 5.0 1.0 3.0 1.5 99 chr2L 19309620 intergenic not near genes chr2L 19309670 intergenic not near genes chr2L 19309719 intergenic not near genes chr2L_6_19305001 chr2L_19305001 RAL-765 288 chr2L 19345011 19345047 chr2L 19357219 19357256 blood 7 12209 3.0 0.5 1.8 2.5 12245 chr2L 19345011 intron dnt - chr2L 19351134 intron dnt - chr2L 19357256 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-765 289 chr2L 19357547 19357569 chr2L 19357637 19357659 11 89 4.0 4.0 4.0 2.2 112 chr2L 19357547 intron dnt - chr2L 19357603 intron dnt - chr2L 19357659 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-765 290 chr2L 19361716 19361741 chr2L 19361803 19361828 4 87 1.0 4.0 2.5 1.1 112 chr2L 19361716 intron dnt - chr2L 19361772 intron dnt - chr2L 19361828 intron dnt - chr2L_4_19360001 chr2L_19360001 RAL-765 291 chr2L 19441065 19441089 chr2L 19441142 19441166 8 77 4.0 5.5 4.8 1.4 101 chr2L 19441065 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_8_19440001 chr2L_19440001 RAL-765 292 chr2L 19469172 19469201 chr2L 19469257 19469286 8 85 0.5 1.5 1.0 4.0 114 chr2L 19469172 5` UTR CR45722 + chr2L 19469229 5` UTR CR45722 + chr2L 19469286 5` UTR CR45722 + chr2L_8_19465001 chr2L_19465001 RAL-765 293 chr2L 19543124 19543158 chr2L 19543208 19543242 12 84 2.0 1.0 1.5 4.8 118 chr2L 19543124 intron ref(2)P + chr2L 19543183 intron ref(2)P + chr2L 19543242 intron ref(2)P + chr2L_12_19540001 chr2L_19540001 RAL-765 294 chr2L 19560004 19560035 chr2L 19560257 19560287 7 252 1.0 3.0 2.0 2.3 283 chr2L 19560004 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560287 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-765 295 chr2L 19560841 19560863 chr2L 19560921 19560943 10 79 2.0 0.0 1.0 5.0 102 chr2L 19560841 intron Tep5 + chr2L 19560892 exon Tep5 + chr2L 19560943 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-765 296 chr2L 19561343 19561352 chr2L 19561484 19561493 10 141 2.5 2.0 2.2 3.1 150 chr2L 19561343 exon Tep5 + chr2L 19561418 exon Tep5 + chr2L 19561493 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-765 297 chr2L 19587790 19587825 chr2L 19587887 19587922 8 96 3.0 3.0 3.0 2.0 132 chr2L 19587790 intron Lar + chr2L 19587856 intron Lar + chr2L 19587922 intron Lar + chr2L_8_19585001 chr2L_19585001 RAL-765 298 chr2L 19620096 19620132 chr2L 19621084 19621120 jockey 9 988 1.5 4.5 3.0 2.2 1024 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621120 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-765 299 chr2L 19652581 19652602 chr2L 19674015 19674036 opus 5 21434 4.0 0.0 2.0 1.7 21455 chr2L 19652581 intron Lar + chr2L 19663308 intron Lar + chr2L 19674036 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-765 300 chr2L 19696387 19696411 chr2L 19696477 19696500 5 90 0.0 0.5 0.2 4.2 113 chr2L 19696387 intron Lar + chr2L 19696444 intron Lar + chr2L 19696500 intron Lar + chr2L_5_19695001 chr2L_19695001 RAL-765 301 chr2L 19703538 19703560 chr2L 19712674 19712696 roo 7 9135 6.0 4.0 5.0 1.2 9158 chr2L 19703538 intron Lar + chr2L 19708117 intron Lar + chr2L 19712696 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-765 302 chr2L 19737353 19737388 chr2L 19740822 19740846 1360 11 3465 0.5 4.0 2.2 3.4 3493 chr2L 19737353 intergenic Nf-YB + chr2L 19739100 intergenic not near genes chr2L 19740846 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-765 303 chr2L 19762810 19762838 chr2L 19763052 19763080 pogo 8 242 1.0 1.0 1.0 4.0 270 chr2L 19762810 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763080 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-765 304 chr2L 19773169 19773187 chr2L 19773256 19773274 5 87 2.5 3.0 2.8 1.3 105 chr2L 19773169 intergenic not near genes chr2L 19773222 intergenic not near genes chr2L 19773274 intergenic not near genes chr2L_5_19770001 chr2L_19770001 RAL-765 305 chr2L 19837292 19837302 chr2L 19837372 19837382 5 80 2.0 4.0 3.0 1.2 90 chr2L 19837292 intron sick + chr2L 19837337 intron sick + chr2L 19837382 intron sick + chr2L_5_19835001 chr2L_19835001 RAL-765 306 chr2L 20005872 20005905 chr2L 20010948 20010981 flea 5 5076 1.0 2.0 1.5 2.0 5109 chr2L 20005872 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010981 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-765 307 chr2L 20041436 20041463 chr2L 20041517 20041548 12 84 4.5 3.5 4.0 2.4 112 chr2L 20041436 intron sNPF + chr2L 20041492 intron sNPF + chr2L 20041548 intron sNPF + chr2L_12_20040001 chr2L_20040001 RAL-765 308 chr2L 20069527 20069555 chr2L 20069606 20069622 13 78 2.0 3.5 2.8 3.4 95 chr2L 20069527 intron bwa + chr2L 20069574 intron bwa + chr2L 20069622 intron bwa + chr2L_13_20065001 chr2L_20065001 RAL-765 309 chr2L 20272122 20272139 chr2L 20282833 20282850 copia 8 10711 4.5 3.5 4.0 1.6 10728 chr2L 20272122 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-765 310 chr2L 20296506 20296541 chr2L 20296587 20296617 8 80 1.5 4.0 2.8 2.1 111 chr2L 20296506 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296617 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 RAL-765 311 chr2L 20303169 20303193 chr2L 20310637 20310661 blood 9 7467 2.0 3.0 2.5 2.6 7492 chr2L 20303169 intergenic not near genes chr2L 20306915 intergenic not near genes chr2L 20310661 intergenic not near genes chr2L_9_20305001 chr2L_20305001 RAL-765 312 chr2L 20310889 20310921 chr2L 20310968 20310999 4 78 0.0 2.5 1.2 1.8 110 chr2L 20310889 intergenic spir + chr2L 20310944 intergenic spir + chr2L 20310999 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-765 313 chr2L 20424058 20424070 chr2L 20424143 20424154 7 85 3.5 6.5 5.0 1.2 96 chr2L 20424058 intron CG15130 - chr2L 20424106 intron CG15130 - chr2L 20424154 intron CG15130 - chr2L_7_20420001 chr2L_20420001 RAL-765 314 chr2L 20468379 20468398 chr2L 20468484 20468503 INE-1 5 105 1.0 5.0 3.0 1.2 124 chr2L 20468379 intron CR44980 - chr2L 20468441 intron CR44980 - chr2L 20468503 intron CR44980 - chr2L_5_20465001 chr2L_20465001 RAL-765 315 chr2L 20498688 20498703 chr2L 20498787 20498800 4 98 4.0 6.0 5.0 0.7 112 chr2L 20498688 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498800 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-765 316 chr2L 20568662 20568678 chr2L 20569050 20569068 X-element 5 389 4.5 2.0 3.2 1.2 406 chr2L 20568662 intron CR45347 + chr2L 20568865 intron CR45347 + chr2L 20569068 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-765 317 chr2L 20576217 20576251 chr2L 20583685 20583719 blood 10 7467 2.5 2.0 2.2 3.1 7502 chr2L 20576217 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-765 318 chr2L 20601794 20601814 chr2L 20601872 20601892 7 78 2.0 1.5 1.8 2.5 98 chr2L 20601794 intron CR44909 - chr2L 20601843 intron CR44909 - chr2L 20601892 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-765 319 chr2L 20602721 20602749 chr2L 20602809 20602837 4 87 0.0 0.0 0.0 4.0 116 chr2L 20602721 intron CR44909 - chr2L 20602779 intron CR44909 - chr2L 20602837 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-765 320 chr2L 20648179 20648185 chr2L 20648358 20648363 7 178 28.0 2.5 15.2 0.4 184 chr2L 20648179 intron Uhg3 + chr2L 20648271 5` UTR Uhg3 + chr2L 20648363 5` UTR Uhg3 + chr2L_7_20645001 chr2L_20645001 RAL-765 321 chr2L 20818514 20818527 chr2L 20818595 20818608 4 81 2.5 2.0 2.2 1.2 94 chr2L 20818514 exon CheB38a - chr2L 20818561 intergenic CheB38a - chr2L 20818608 intergenic CheB38a - chr2L_4_20815001 chr2L_20815001 RAL-765 322 chr2L 20835809 20835841 chr2L 20836525 20836558 Quasimodo 6 717 1.0 1.5 1.2 2.7 749 chr2L 20835809 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836558 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-765 323 chr2L 20901475 20901488 chr2L 20902637 20902652 1360 4 1164 0.5 3.0 1.8 1.4 1177 chr2L 20901475 intron,intron CG43739 -,sky - chr2L 20902064 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-765 324 chr2L 20958044 20958070 chr2L 20958345 20958368 8 300 1.0 3.0 2.0 2.7 324 chr2L 20958044 intergenic not near genes chr2L 20958206 intergenic not near genes chr2L 20958368 intergenic not near genes chr2L_8_20955001 chr2L_20955001 RAL-765 325 chr2L 20976653 20976672 chr2L 20981468 20981487 X-element 4 4815 2.5 3.5 3.0 1.0 4834 chr2L 20976653 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981487 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-765 326 chr2L 21020272 21020299 chr2L 21023949 21023976 NOF 8 3676 3.5 1.5 2.5 2.3 3704 chr2L 21020272 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023976 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-765 327 chr2L 21041134 21041164 chr2L 21049394 21049425 Tirant 6 8261 2.0 1.0 1.5 2.4 8291 chr2L 21041134 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049425 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-765 328 chr2L 21088921 21088950 chr2L 21089004 21089033 4 83 0.0 1.0 0.5 2.7 112 chr2L 21088921 intergenic ppk13 -,CG9259 + chr2L 21088977 intergenic ppk13 -,CG9259 + chr2L 21089033 intergenic ppk13 -,CG9259 + chr2L_4_21085001 chr2L_21085001 RAL-765 329 chr2L 21215652 21215685 chr2L 21215728 21215761 8 76 3.5 3.0 3.2 1.9 109 chr2L 21215652 intron Atg18b - chr2L 21215706 intron Atg18b - chr2L 21215761 intron Atg18b - chr2L_8_21215001 chr2L_21215001 RAL-765 330 chr2L 21246519 21246539 chr2L 21246614 21246634 5 95 3.5 4.5 4.0 1.0 115 chr2L 21246519 intron Hr39 + chr2L 21246576 intron Hr39 + chr2L 21246634 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-765 331 chr2L 21355610 21355635 chr2L 21355755 21355780 4 143 1.0 0.0 0.5 2.7 170 chr2L 21355610 intron Tsp39D + chr2L 21355695 intron Tsp39D + chr2L 21355780 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-765 332 chr2L 21394376 21394393 chr2L 21394455 21394472 4 78 1.5 0.5 1.0 2.0 96 chr2L 21394376 intergenic not near genes chr2L 21394424 intergenic not near genes chr2L 21394472 intergenic not near genes chr2L_4_21390001 chr2L_21390001 RAL-765 333 chr2L 21597030 21597063 chr2L 21604774 21604807 roo 7 7744 1.5 1.0 1.2 3.2 7777 chr2L 21597030 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604807 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-765 334 chr2L 21819335 21819359 chr2L 21819423 21819447 5 88 2.5 2.0 2.2 1.6 112 chr2L 21819335 intergenic CR44786 + chr2L 21819391 intergenic CR44786 + chr2L 21819447 intergenic CR44786 + chr2L_5_21815001 chr2L_21815001 RAL-765 335 chr2L 21882578 21882609 chr2L 21882660 21882689 5 81 1.5 0.0 0.8 2.8 111 chr2L 21882578 intergenic not near genes chr2L 21882634 intergenic not near genes chr2L 21882689 intergenic not near genes chr2L_5_21880001 chr2L_21880001 RAL-765 336 chr2L 22212148 22212163 chr2L 22212694 22212710 4 547 0.5 3.5 2.0 1.3 562 chr2L 22212148 intron Ir40a - chr2L 22212429 intron Ir40a - chr2L 22212710 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-765 337 chr2L 22239432 22239455 chr2L 22239512 22239535 5 80 4.5 2.5 3.5 1.1 103 chr2L 22239432 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239535 3` UTR CR43765 - chr2L_5_22235001 chr2L_22235001 RAL-765 338 chr2L 22350270 22350287 chr2L 22350372 22350389 9 101 0.5 4.0 2.2 2.8 119 chr2L 22350270 intron CG17018 + chr2L 22350330 intron CG17018 + chr2L 22350389 intron CG17018 + chr2L_9_22350001 chr2L_22350001 RAL-765 339 chr2L 22545982 22546011 chr2L 22546078 22546107 6 96 1.5 1.5 1.5 2.4 125 chr2L 22545982 intron CG17490 + chr2L 22546044 intron CG17490 + chr2L 22546107 intron CG17490 + chr2L_6_22545001 chr2L_22545001 RAL-765 340 chr2L 22679803 22679822 chr2L 22684575 22684594 F-element 4 4772 1.5 4.5 3.0 1.0 4791 chr2L 22679803 intron CG40006 - chr2L 22682198 intron CG40006 - chr2L 22684594 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-765 341 chr2L 22776425 22776443 chr2L 22778214 22778231 S-element 4 1788 1.5 1.0 1.2 1.8 1806 chr2L 22776425 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778231 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-765 342 chr2R 529334 529354 chr2R 537959 537978 Max-element 4 8624 2.5 2.0 2.2 1.2 8644 chr2R 529334 intron CG40378 + chr2R 533656 intron CG40378 + chr2R 537978 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-765 343 chr2R 1082365 1082384 chr2R 1087127 1087160 Doc 4 4771 3.0 1.5 2.2 1.2 4795 chr2R 1082365 intron rl + chr2R 1084762 intron rl + chr2R 1087160 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-765 344 chr2R 2498986 2499015 chr2R 2508132 2508155 roo 4 9144 2.0 2.0 2.0 1.3 9169 chr2R 2498986 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508155 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-765 345 chr2R 3293753 3293759 chr2R 3293831 3293837 5 78 0.0 1.0 0.5 3.3 84 chr2R 3293753 intergenic not near genes chr2R 3293795 intergenic not near genes chr2R 3293837 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-765 346 chr2R 3818932 3818939 chr2R 3819048 3819055 4 116 6.0 0.5 3.2 1.0 123 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819055 intergenic not near genes chr2R_4_3815001 chr2R_3815001 RAL-765 347 chr2R 3927686 3927705 chr2R 3927783 3927802 7 95 3.0 3.0 3.0 1.8 116 chr2R 3927686 intron uex - chr2R 3927744 intron uex - chr2R 3927802 intron uex - chr2R_7_3925001 chr2R_3925001 RAL-765 348 chr2R 4015312 4015334 chr2R 4015485 4015507 5 173 1.5 1.5 1.5 2.0 195 chr2R 4015312 intron Haspin + chr2R 4015410 intron Haspin + chr2R 4015507 intron Haspin + chr2R_5_4015001 chr2R_4015001 RAL-765 349 chr2R 4312950 4312987 chr2R 4313034 4313071 6 84 2.5 1.0 1.8 2.1 121 chr2R 4312950 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_6_4310001 chr2R_4310001 RAL-765 350 chr2R 4329554 4329578 chr2R 4329640 4329661 8 86 3.5 3.0 3.2 1.9 107 chr2R 4329554 intron Gprk1 - chr2R 4329608 intron Gprk1 - chr2R 4329661 intron Gprk1 - chr2R_8_4325001 chr2R_4325001 RAL-765 351 chr2R 4350763 4350799 chr2R 4350843 4350879 6 80 1.0 1.0 1.0 3.0 116 chr2R 4350763 exon Gprk1 - chr2R 4350821 intron Gprk1 - chr2R 4350879 intron Gprk1 - chr2R_6_4350001 chr2R_4350001 RAL-765 352 chr2R 4621316 4621346 chr2R 4621856 4621886 6 540 1.0 3.5 2.2 1.9 570 chr2R 4621316 3` UTR CR44101 - chr2R 4621601 3` UTR CR44101 - chr2R 4621886 3` UTR CR44101 - chr2R_6_4620001 chr2R_4620001 RAL-765 353 chr2R 4622965 4622983 chr2R 4624124 4624142 1360 4 1159 0.5 3.5 2.0 1.3 1177 chr2R 4622965 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624142 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-765 354 chr2R 4688106 4688130 chr2R 4688199 4688222 6 93 1.0 0.0 0.5 4.0 116 chr2R 4688106 intergenic not near genes chr2R 4688164 intergenic not near genes chr2R 4688222 intergenic not near genes chr2R_6_4685001 chr2R_4685001 RAL-765 355 chr2R 4838873 4838888 chr2R 4840395 4840411 transib2 11 1522 7.5 5.0 6.2 1.5 1538 chr2R 4838873 intergenic not near genes chr2R 4839642 intergenic not near genes chr2R 4840411 intergenic not near genes chr2R_11_4835001 chr2R_4835001 RAL-765 356 chr2R 4908911 4908945 chr2R 4908998 4909033 13 88 0.0 1.5 0.8 7.2 122 chr2R 4908911 intergenic not near genes chr2R 4908972 intergenic not near genes chr2R 4909033 intergenic not near genes chr2R_13_4905001 chr2R_4905001 RAL-765 357 chr2R 5103047 5103077 chr2R 5103129 5103159 4 82 1.0 1.5 1.2 1.8 112 chr2R 5103047 intergenic not near genes chr2R 5103103 intergenic not near genes chr2R 5103159 intergenic not near genes chr2R_4_5100001 chr2R_5100001 RAL-765 358 chr2R 5150597 5150620 chr2R 5150678 5150697 5 81 1.5 2.0 1.8 1.8 100 chr2R 5150597 intron Atf6 + chr2R 5150647 intron Atf6 + chr2R 5150697 intron Atf6 + chr2R_5_5150001 chr2R_5150001 RAL-765 359 chr2R 5237358 5237373 chr2R 5237439 5237455 4 82 1.0 0.0 0.5 2.7 97 chr2R 5237358 intron Nipped-A - chr2R 5237406 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-765 360 chr2R 5240220 5240242 chr2R 5240296 5240318 4 76 3.0 1.0 2.0 1.3 98 chr2R 5240220 intron Nipped-A - chr2R 5240269 intron Nipped-A - chr2R 5240318 intron Nipped-A - chr2R_4_5240001 chr2R_5240001 RAL-765 361 chr2R 5396261 5396288 chr2R 5396499 5396526 9 238 1.5 1.0 1.2 4.1 265 chr2R 5396261 intergenic not near genes chr2R 5396394 intergenic not near genes chr2R 5396526 intergenic not near genes chr2R_9_5395001 chr2R_5395001 RAL-765 362 chr2R 5417992 5418005 chr2R 5420624 5420637 Burdock 4 2630 1.0 2.5 1.8 1.4 2645 chr2R 5417992 intron laccase2 + chr2R 5419314 intron laccase2 + chr2R 5420637 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-765 363 chr2R 5460522 5460555 chr2R 5460626 5460659 10 100 4.5 0.5 2.5 2.9 137 chr2R 5460522 intergenic not near genes chr2R 5460590 intergenic not near genes chr2R 5460659 intergenic not near genes chr2R_10_5460001 chr2R_5460001 RAL-765 364 chr2R 5491674 5491688 chr2R 5491767 5491780 4 92 1.5 0.0 0.8 2.2 106 chr2R 5491674 intron CG30440 - chr2R 5491727 intron CG30440 - chr2R 5491780 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-765 365 chr2R 5509518 5509541 chr2R 5509614 5509636 10 96 0.0 0.5 0.2 8.3 118 chr2R 5509518 intron CG30438 + chr2R 5509577 intron CG30438 + chr2R 5509636 intron CG30438 + chr2R_10_5505001 chr2R_5505001 RAL-765 366 chr2R 5541938 5541968 chr2R 5542171 5542201 5 233 0.5 0.5 0.5 3.3 263 chr2R 5541938 intron CG30438 + chr2R 5542070 intron CG30438 + chr2R 5542201 intron CG30438 + chr2R_5_5540001 chr2R_5540001 RAL-765 367 chr2R 5802011 5802044 chr2R 5802087 5802114 9 75 2.0 3.0 2.5 2.6 103 chr2R 5802011 intergenic not near genes chr2R 5802062 intergenic not near genes chr2R 5802114 intergenic not near genes chr2R_9_5800001 chr2R_5800001 RAL-765 368 chr2R 5837277 5837288 chr2R 5837357 5837368 4 80 2.5 12.5 7.5 0.5 91 chr2R 5837277 intron dpr12 + chr2R 5837322 intron dpr12 + chr2R 5837368 intron dpr12 + chr2R_4_5835001 chr2R_5835001 RAL-765 369 chr2R 5869276 5869308 chr2R 5874352 5874384 flea 12 5076 4.0 3.5 3.8 2.5 5108 chr2R 5869276 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-765 370 chr2R 6096714 6096748 chr2R 6101910 6101946 BS 11 5196 2.5 1.5 2.0 3.7 5232 chr2R 6096714 intron EcR - chr2R 6099330 intron EcR - chr2R 6101946 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-765 371 chr2R 6178685 6178713 chr2R 6178772 6178800 7 87 2.0 1.0 1.5 2.8 115 chr2R 6178685 intergenic not near genes chr2R 6178742 intergenic not near genes chr2R 6178800 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-765 372 chr2R 6218106 6218132 chr2R 6218185 6218211 5 79 1.5 3.5 2.5 1.4 105 chr2R 6218106 intron,intron bin3 +,CR44161 - chr2R 6218158 intron,intron bin3 +,CR44161 - chr2R 6218211 intron,intron bin3 +,CR44161 - chr2R_5_6215001 chr2R_6215001 RAL-765 373 chr2R 6550929 6550955 chr2R 6551005 6551031 7 76 1.5 2.5 2.0 2.3 102 chr2R 6550929 intron jing + chr2R 6550980 intron jing + chr2R 6551031 intron jing + chr2R_7_6550001 chr2R_6550001 RAL-765 374 chr2R 6579776 6579801 chr2R 6584861 6584886 flea 4 5086 2.0 4.0 3.0 1.0 5110 chr2R 6579776 intron jing + chr2R 6582331 intron jing + chr2R 6584886 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-765 375 chr2R 6607927 6607957 chr2R 6608029 6608059 6 102 3.5 1.5 2.5 1.7 132 chr2R 6607927 intron jing + chr2R 6607993 intron jing + chr2R 6608059 intron jing + chr2R_6_6605001 chr2R_6605001 RAL-765 376 chr2R 6613343 6613351 chr2R 6613437 6613445 4 94 3.5 3.0 3.2 1.0 102 chr2R 6613343 intron jing + chr2R 6613394 intron jing + chr2R 6613445 intron jing + chr2R_4_6610001 chr2R_6610001 RAL-765 377 chr2R 6664183 6664199 chr2R 6665973 6665989 S-element 5 1790 2.0 3.0 2.5 1.4 1806 chr2R 6664183 intron,3` UTR Adf1 +,CR45128 - chr2R 6665086 intron Adf1 + chr2R 6665989 intron Adf1 + chr2R_5_6665001 chr2R_6665001 RAL-765 378 chr2R 6699593 6699613 chr2R 6699678 6699698 5 85 1.0 2.0 1.5 2.0 105 chr2R 6699593 intergenic Rab2 + chr2R 6699646 intergenic Rab2 + chr2R 6699698 intergenic Rab2 + chr2R_5_6695001 chr2R_6695001 RAL-765 379 chr2R 6819871 6819904 chr2R 6819952 6819985 14 81 3.5 3.0 3.2 3.3 114 chr2R 6819871 intergenic not near genes chr2R 6819928 intergenic not near genes chr2R 6819985 intergenic not near genes chr2R_14_6815001 chr2R_6815001 RAL-765 380 chr2R 6825437 6825468 chr2R 6825529 6825561 10 92 1.5 3.0 2.2 3.1 124 chr2R 6825437 intergenic not near genes chr2R 6825499 intergenic not near genes chr2R 6825561 intergenic not near genes chr2R_10_6825001 chr2R_6825001 RAL-765 381 chr2R 6915539 6915548 chr2R 6915617 6915638 6 87 0.5 2.0 1.2 2.7 99 chr2R 6915539 intron CG30158 + chr2R 6915588 intron CG30158 + chr2R 6915638 intron CG30158 + chr2R_6_6915001 chr2R_6915001 RAL-765 382 chr2R 6978814 6978840 chr2R 6978956 6978982 9 142 0.5 4.0 2.2 2.8 168 chr2R 6978814 intron vimar - chr2R 6978898 intron vimar - chr2R 6978982 intron vimar - chr2R_9_6975001 chr2R_6975001 RAL-765 383 chr2R 7095970 7095997 chr2R 7096070 7096097 8 100 4.5 2.5 3.5 1.8 127 chr2R 7095970 intron esn + chr2R 7096034 intron esn + chr2R 7096097 intron esn + chr2R_8_7095001 chr2R_7095001 RAL-765 384 chr2R 7129417 7129440 chr2R 7131673 7131696 6 2256 27.0 44.5 35.8 0.2 2279 chr2R 7129417 exon Cyp9b1 - chr2R 7130556 intron Cyp9b2 - chr2R 7131696 exon Cyp9b2 - chr2R_6_7130001 chr2R_7130001 RAL-765 385 chr2R 7235819 7235852 chr2R 7240911 7240944 jockey 13 5092 2.5 3.0 2.8 3.4 5125 chr2R 7235819 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_13_7235001 chr2R_7235001 RAL-765 386 chr2R 7371747 7371779 chr2R 7371851 7371882 9 104 1.5 3.5 2.5 2.6 135 chr2R 7371747 intron Dscam1 - chr2R 7371814 intron Dscam1 - chr2R 7371882 intron Dscam1 - chr2R_9_7370001 chr2R_7370001 RAL-765 387 chr2R 7618932 7618962 chr2R 7619030 7619060 9 98 18.0 23.5 20.8 0.4 128 chr2R 7618932 intron CG1358 - chr2R 7618996 intron CG1358 - chr2R 7619060 intron CG1358 - chr2R_9_7615001 chr2R_7615001 RAL-765 388 chr2R 7629066 7629087 chr2R 7629144 7629165 5 78 4.0 1.5 2.8 1.3 99 chr2R 7629066 intron CG43340 + chr2R 7629116 intron CG43340 + chr2R 7629165 intron CG43340 + chr2R_5_7625001 chr2R_7625001 RAL-765 389 chr2R 7815678 7815705 chr2R 7822147 7822154 Burdock 10 6467 3.0 5.0 4.0 2.0 6476 chr2R 7815678 intergenic CG1882 + chr2R 7818916 intergenic not near genes chr2R 7822154 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-765 390 chr2R 7855286 7855304 chr2R 7855374 7855392 4 88 0.0 3.5 1.8 1.4 106 chr2R 7855286 intron Dgk - chr2R 7855339 intron Dgk - chr2R 7855392 intron Dgk - chr2R_4_7855001 chr2R_7855001 RAL-765 391 chr2R 7899533 7899535 chr2R 10066496 10066497 4 2166962 6.5 15.0 10.8 0.3 2166964 chr2R 7899533 intron CG30377 + chr2R 8983015 intron CG8213 - chr2R 10066497 5` UTR CG2292 - chr2R_4_8980001 chr2R_8980001 RAL-765 392 chr2R 7901686 7901716 chr2R 7901853 7901886 8 164 6.0 3.5 4.8 1.4 200 chr2R 7901686 intron CG30377 + chr2R 7901786 intron CG30377 + chr2R 7901886 intron CG30377 + chr2R_8_7900001 chr2R_7900001 RAL-765 393 chr2R 8018119 8018144 chr2R 8018212 8018237 8 93 0.0 2.0 1.0 4.0 118 chr2R 8018119 intergenic not near genes chr2R 8018178 intergenic not near genes chr2R 8018237 intergenic not near genes chr2R_8_8015001 chr2R_8015001 RAL-765 394 chr2R 8026811 8026828 chr2R 8026887 8026904 5 76 2.5 0.5 1.5 2.0 93 chr2R 8026811 intergenic CR45267 + chr2R 8026858 intergenic CR45267 + chr2R 8026904 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 RAL-765 395 chr2R 8067063 8067097 chr2R 8067147 8067181 9 84 1.0 2.5 1.8 3.2 118 chr2R 8067063 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067181 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-765 396 chr2R 8089257 8089285 chr2R 8089343 8089371 5 86 1.5 1.5 1.5 2.0 114 chr2R 8089257 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-765 397 chr2R 8155580 8155612 chr2R 8155667 8155701 11 89 2.0 1.0 1.5 4.4 121 chr2R 8155580 intron,intron Lpin -,kermit - chr2R 8155640 intron,intron Lpin -,kermit - chr2R 8155701 intron,intron Lpin -,kermit - chr2R_11_8155001 chr2R_8155001 RAL-765 398 chr2R 8157900 8157909 chr2R 8157988 8157997 4 88 7.0 2.5 4.8 0.7 97 chr2R 8157900 5` UTR CR44068 + chr2R 8157948 5` UTR CR44068 + chr2R 8157997 5` UTR CR44068 + chr2R_4_8155001 chr2R_8155001 RAL-765 399 chr2R 8236037 8236064 chr2R 8236118 8236144 5 81 3.5 2.5 3.0 1.2 107 chr2R 8236037 intergenic not near genes chr2R 8236090 intergenic not near genes chr2R 8236144 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-765 400 chr2R 8330866 8330894 chr2R 8331351 8331380 roo 6 486 2.5 2.0 2.2 1.9 514 chr2R 8330866 intron pdm3 + chr2R 8331123 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-765 401 chr2R 8368188 8368221 chr2R 8368268 8368301 12 80 1.5 4.5 3.0 3.0 113 chr2R 8368188 intron pdm3 + chr2R 8368244 intron pdm3 + chr2R 8368301 intron pdm3 + chr2R_12_8365001 chr2R_8365001 RAL-765 402 chr2R 8398213 8398236 chr2R 8402994 8403017 Doc 7 4779 5.0 4.0 4.5 1.3 4804 chr2R 8398213 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403017 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-765 403 chr2R 8452910 8452934 chr2R 8452991 8453011 9 80 2.0 4.0 3.0 2.2 101 chr2R 8452910 intergenic not near genes chr2R 8452960 intergenic not near genes chr2R 8453011 intergenic not near genes chr2R_9_8450001 chr2R_8450001 RAL-765 404 chr2R 8453086 8453117 chr2R 8453502 8453533 9 416 4.0 1.0 2.5 2.6 447 chr2R 8453086 intergenic not near genes chr2R 8453310 intergenic Mal-A2 + chr2R 8453533 intergenic Mal-A2 + chr2R_9_8450001 chr2R_8450001 RAL-765 405 chr2R 8483962 8483985 chr2R 8484038 8484061 6 76 2.0 2.0 2.0 2.0 99 chr2R 8483962 intron mtt - chr2R 8484012 intron mtt - chr2R 8484061 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-765 406 chr2R 8501138 8501153 chr2R 8501230 8501245 5 92 0.0 0.0 0.0 5.0 107 chr2R 8501138 intron mtt - chr2R 8501192 intron mtt - chr2R 8501245 intron mtt - chr2R_5_8500001 chr2R_8500001 RAL-765 407 chr2R 8508786 8508795 chr2R 8508850 8508878 4 78 0.5 3.0 1.8 1.4 92 chr2R 8508786 intron mtt - chr2R 8508832 intron mtt - chr2R 8508878 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-765 408 chr2R 8691127 8691150 chr2R 8691596 8691619 9 469 4.0 2.5 3.2 2.1 492 chr2R 8691127 intergenic Jon44E + chr2R 8691373 intergenic Jon44E + chr2R 8691619 exon Jon44E + chr2R_9_8690001 chr2R_8690001 RAL-765 409 chr2R 8722762 8722792 chr2R 8723003 8723032 pogo 5 240 1.5 2.5 2.0 1.7 270 chr2R 8722762 intron CG14767 - chr2R 8722897 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-765 410 chr2R 8817584 8817616 chr2R 8817674 8817704 6 89 4.0 4.5 4.2 1.2 120 chr2R 8817584 intron sns + chr2R 8817644 intron sns + chr2R 8817704 intron sns + chr2R_6_8815001 chr2R_8815001 RAL-765 411 chr2R 8849234 8849267 chr2R 8849312 8849345 8 78 3.0 2.0 2.5 2.3 111 chr2R 8849234 intron sns + chr2R 8849290 intron sns + chr2R 8849345 intron sns + chr2R_8_8845001 chr2R_8845001 RAL-765 412 chr2R 8966156 8966181 chr2R 8966246 8966271 8 90 2.0 3.5 2.8 2.1 115 chr2R 8966156 intron CG8216 - chr2R 8966214 intron CG8216 - chr2R 8966271 intron CG8216 - chr2R_8_8965001 chr2R_8965001 RAL-765 413 chr2R 9016950 9016978 chr2R 9017036 9017064 5 86 2.0 5.5 3.8 1.0 114 chr2R 9016950 5` UTR CG13744 - chr2R 9017007 5` UTR CG13744 - chr2R 9017064 5` UTR CG13744 - chr2R_5_9015001 chr2R_9015001 RAL-765 414 chr2R 9019868 9019895 chr2R 9019945 9019972 14 76 5.0 3.5 4.2 2.7 104 chr2R 9019868 exon CG8170 - chr2R 9019920 intron CG8170 - chr2R 9019972 intron CG8170 - chr2R_14_9015001 chr2R_9015001 RAL-765 415 chr2R 9212697 9212719 chr2R 9213183 9213205 roo 9 484 5.0 6.5 5.8 1.3 508 chr2R 9212697 intergenic CR45309 + chr2R 9212951 intergenic CR45309 + chr2R 9213205 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-765 416 chr2R 9230223 9230240 chr2R 9230303 9230320 7 79 6.5 7.5 7.0 0.9 97 chr2R 9230223 intron hig - chr2R 9230272 intron hig - chr2R 9230320 exon hig - chr2R_7_9230001 chr2R_9230001 RAL-765 417 chr2R 9236605 9236626 chr2R 9236692 9236713 7 87 1.0 1.5 1.2 3.2 108 chr2R 9236605 intron hig - chr2R 9236659 intron hig - chr2R 9236713 intron hig - chr2R_7_9235001 chr2R_9235001 RAL-765 418 chr2R 9389169 9389182 chr2R 9389251 9389264 6 82 3.0 8.5 5.8 0.9 95 chr2R 9389169 5` UTR CG13954 - chr2R 9389216 5` UTR CG13954 - chr2R 9389264 5` UTR CG13954 - chr2R_6_9385001 chr2R_9385001 RAL-765 419 chr2R 9429795 9429824 chr2R 9429900 9429929 12 104 4.0 2.5 3.2 2.9 134 chr2R 9429795 intron Pdk + chr2R 9429862 intron Pdk + chr2R 9429929 intron Pdk + chr2R_12_9425001 chr2R_9425001 RAL-765 420 chr2R 9461246 9461259 chr2R 9461335 9461348 5 89 1.5 9.0 5.2 0.8 102 chr2R 9461246 intron Camta + chr2R 9461297 intron Camta + chr2R 9461348 intron Camta + chr2R_5_9460001 chr2R_9460001 RAL-765 421 chr2R 9479581 9479605 chr2R 9479661 9479685 8 80 4.0 2.5 3.2 1.9 104 chr2R 9479581 intergenic not near genes chr2R 9479633 intergenic not near genes chr2R 9479685 intergenic not near genes chr2R_8_9475001 chr2R_9475001 RAL-765 422 chr2R 9510667 9510694 chr2R 9510783 9510810 7 116 2.0 1.5 1.8 2.5 143 chr2R 9510667 intron brp + chr2R 9510738 intron brp + chr2R 9510810 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-765 423 chr2R 9541624 9541641 chr2R 9541700 9541717 4 76 0.0 2.5 1.2 1.8 93 chr2R 9541624 intergenic brp +,CG1888 - chr2R 9541670 intergenic brp +,CG1888 - chr2R 9541717 intergenic brp +,CG1888 - chr2R_4_9540001 chr2R_9540001 RAL-765 424 chr2R 9726618 9726644 chr2R 9734169 9734195 17.6 4 7551 2.0 2.0 2.0 1.3 7577 chr2R 9726618 intron sqa - chr2R 9730406 intron sqa - chr2R 9734195 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-765 425 chr2R 9871045 9871068 chr2R 9871531 9871554 roo 7 486 0.0 2.5 1.2 3.2 509 chr2R 9871045 intron cbx - chr2R 9871300 intron cbx - chr2R 9871554 intron,5` UTR cbx -,CG18446 + chr2R_7_9870001 chr2R_9870001 RAL-765 426 chr2R 9945435 9945473 chr2R 9945630 9945646 BS 7 192 0.5 2.5 1.5 2.8 211 chr2R 9945435 intron Mef2 - chr2R 9945540 intron Mef2 - chr2R 9945646 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-765 427 chr2R 10005558 10005576 chr2R 10005655 10005673 7 97 5.5 0.0 2.8 1.8 115 chr2R 10005558 intron Pka-R2 - chr2R 10005616 intron Pka-R2 - chr2R 10005673 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-765 428 chr2R 10005848 10005882 chr2R 10007011 10007046 1360 10 1164 3.0 4.5 3.8 2.1 1198 chr2R 10005848 intron Pka-R2 - chr2R 10006447 intron Pka-R2 - chr2R 10007046 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-765 429 chr2R 10044118 10044143 chr2R 10044371 10044397 8 250 2.5 0.5 1.5 3.2 279 chr2R 10044118 intron,5` UTR oys -,CR44295 + chr2R 10044258 intron,5` UTR oys -,CR44295 + chr2R 10044397 intron,5` UTR oys -,CR44295 + chr2R_8_10040001 chr2R_10040001 RAL-765 430 chr2R 10086927 10086932 chr2R 10087023 10087029 4 97 2.5 2.5 2.5 1.1 102 chr2R 10086927 intron,exon CG2269 +,sut4 - chr2R 10086978 intron,5` UTR CG2269 +,sut4 - chr2R 10087029 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-765 431 chr2R 10122740 10122750 chr2R 10122950 10122960 4 210 1.5 1.0 1.2 1.8 220 chr2R 10122740 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-765 432 chr2R 10171113 10171124 chr2R 10171197 10171208 5 83 1.0 3.0 2.0 1.7 95 chr2R 10171113 intron KCNQ - chr2R 10171160 intron KCNQ - chr2R 10171208 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-765 433 chr2R 10176120 10176151 chr2R 10176199 10176220 6 77 2.0 2.5 2.2 1.9 100 chr2R 10176120 intron KCNQ - chr2R 10176170 intron KCNQ - chr2R 10176220 intron KCNQ - chr2R_6_10175001 chr2R_10175001 RAL-765 434 chr2R 10176882 10176911 chr2R 10186049 10186078 roo 6 9166 1.0 2.0 1.5 2.4 9196 chr2R 10176882 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186078 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-765 435 chr2R 10190445 10190469 chr2R 10190529 10190549 7 82 2.0 2.5 2.2 2.2 104 chr2R 10190445 intron KCNQ - chr2R 10190497 intron KCNQ - chr2R 10190549 intron KCNQ - chr2R_7_10190001 chr2R_10190001 RAL-765 436 chr2R 10225746 10225751 chr2R 10225828 10225833 4 81 3.0 1.5 2.2 1.2 87 chr2R 10225746 intron,intron CG12912 -,Hr46 - chr2R 10225790 intron,intron CG12912 -,Hr46 - chr2R 10225833 intron,intron CG12912 -,Hr46 - chr2R_4_10225001 chr2R_10225001 RAL-765 437 chr2R 10313319 10313351 chr2R 10313407 10313439 8 88 2.0 3.0 2.5 2.3 120 chr2R 10313319 intergenic not near genes chr2R 10313379 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_8_10310001 chr2R_10310001 RAL-765 438 chr2R 10352674 10352702 chr2R 10352751 10352778 12 77 3.0 3.0 3.0 3.0 104 chr2R 10352674 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352778 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_12_10350001 chr2R_10350001 RAL-765 439 chr2R 10387978 10388003 chr2R 10388075 10388100 7 97 0.0 3.0 1.5 2.8 122 chr2R 10387978 intron CG42732 - chr2R 10388039 intron CG42732 - chr2R 10388100 intron CG42732 - chr2R_7_10385001 chr2R_10385001 RAL-765 440 chr2R 10429022 10429049 chr2R 10429097 10429125 5 76 3.5 1.0 2.2 1.6 103 chr2R 10429022 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429125 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-765 441 chr2R 10469033 10469048 chr2R 10469148 10469164 6 116 3.0 2.5 2.8 1.6 131 chr2R 10469033 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469164 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-765 442 chr2R 10574629 10574646 chr2R 10574711 10574728 6 82 4.5 3.5 4.0 1.2 99 chr2R 10574629 intron psq + chr2R 10574678 intron psq + chr2R 10574728 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-765 443 chr2R 10585573 10585585 chr2R 10594156 10594168 Tirant 5 8583 3.5 1.0 2.2 1.6 8595 chr2R 10585573 intron psq + chr2R 10589870 intron psq + chr2R 10594168 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-765 444 chr2R 10644062 10644091 chr2R 10644140 10644169 5 77 0.5 1.5 1.0 2.5 107 chr2R 10644062 intron Git - chr2R 10644116 intron Git - chr2R 10644169 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-765 445 chr2R 10771000 10771020 chr2R 10771081 10771101 10 81 2.0 2.0 2.0 3.3 101 chr2R 10771000 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771101 intron CG33144 - chr2R_10_10770001 chr2R_10770001 RAL-765 446 chr2R 10781401 10781423 chr2R 10781759 10781782 6 359 1.0 2.5 1.8 2.1 381 chr2R 10781401 intron CG33144 - chr2R 10781592 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_6_10780001 chr2R_10780001 RAL-765 447 chr2R 10790141 10790176 chr2R 10790229 10790264 14 88 1.0 3.5 2.2 4.4 123 chr2R 10790141 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790264 intron CG33144 - chr2R_14_10790001 chr2R_10790001 RAL-765 448 chr2R 10860581 10860588 chr2R 10860657 10860664 4 76 0.0 2.0 1.0 2.0 83 chr2R 10860581 intron CG30015 - chr2R 10860622 intron CG30015 - chr2R 10860664 intron CG30015 - chr2R_4_10860001 chr2R_10860001 RAL-765 449 chr2R 10930928 10930946 chr2R 10931099 10931117 4 171 3.5 2.0 2.8 1.1 189 chr2R 10930928 intergenic not near genes chr2R 10931022 intergenic not near genes chr2R 10931117 intergenic not near genes chr2R_4_10930001 chr2R_10930001 RAL-765 450 chr2R 10948034 10948058 chr2R 10955585 10955608 17.6 8 7549 0.5 3.5 2.0 2.7 7574 chr2R 10948034 intergenic not near genes chr2R 10951821 intergenic not near genes chr2R 10955608 intergenic not near genes chr2R_8_10950001 chr2R_10950001 RAL-765 451 chr2R 11009818 11009848 chr2R 11018992 11019022 roo 6 9174 1.0 1.0 1.0 3.0 9204 chr2R 11009818 intron luna - chr2R 11014420 intron luna - chr2R 11019022 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-765 452 chr2R 11144294 11144303 chr2R 11144394 11144404 5 101 0.0 0.0 0.0 5.0 110 chr2R 11144294 intron CG13229 - chr2R 11144349 intron CG13229 - chr2R 11144404 intron CG13229 - chr2R_5_11140001 chr2R_11140001 RAL-765 453 chr2R 11150187 11150194 chr2R 11150263 11150270 4 76 3.5 3.0 3.2 1.0 83 chr2R 11150187 intron CG13229 - chr2R 11150228 intron CG13229 - chr2R 11150270 intron CG13229 - chr2R_4_11150001 chr2R_11150001 RAL-765 454 chr2R 11150810 11150825 chr2R 11150886 11150901 4 76 0.5 0.0 0.2 3.3 91 chr2R 11150810 intron CG13229 - chr2R 11150856 intron CG13229 - chr2R 11150901 intron CG13229 - chr2R_4_11150001 chr2R_11150001 RAL-765 455 chr2R 11207813 11207841 chr2R 11208005 11208033 BS 10 192 3.5 1.5 2.5 2.9 220 chr2R 11207813 intron shn + chr2R 11207923 intron shn + chr2R 11208033 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-765 456 chr2R 11292967 11292995 chr2R 11293046 11293074 15 78 3.0 0.0 1.5 6.0 107 chr2R 11292967 exon,3` UTR dare -,CG30033 + chr2R 11293020 5` UTR,3` UTR dare -,CG30033 + chr2R 11293074 5` UTR,3` UTR dare -,CG30033 + chr2R_15_11290001 chr2R_11290001 RAL-765 457 chr2R 11297619 11297651 chr2R 11301940 11301972 flea 6 4321 4.0 3.5 3.8 1.2 4353 chr2R 11297619 intergenic CG42336 - chr2R 11299796 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-765 458 chr2R 11415432 11415452 chr2R 11415504 11415523 4 70 1.5 1.5 1.5 1.6 91 chr2R 11415432 intron,3` UTR Drip -,CG7763 + chr2R 11415478 intron Drip - chr2R 11415523 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-765 459 chr2R 11415519 11415551 chr2R 11418668 11418699 opus 7 3148 2.0 3.5 2.8 1.8 3180 chr2R 11415519 intron Drip - chr2R 11417109 intron Drip - chr2R 11418699 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-765 460 chr2R 11421672 11421703 chr2R 11421752 11421783 6 80 1.5 2.0 1.8 2.1 111 chr2R 11421672 intron Drip - chr2R 11421728 intron Drip - chr2R 11421783 intron Drip - chr2R_6_11420001 chr2R_11420001 RAL-765 461 chr2R 11472655 11472670 chr2R 11473852 11473867 pogo 9 1197 2.0 3.0 2.5 2.6 1212 chr2R 11472655 intergenic not near genes chr2R 11473261 intergenic not near genes chr2R 11473867 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-765 462 chr2R 11472671 11472680 chr2R 11473848 11473876 pogo 5 1193 0.5 3.0 1.8 1.8 1205 chr2R 11472671 intergenic not near genes chr2R 11473274 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-765 463 chr2R 11540809 11540841 chr2R 11540900 11540933 12 92 2.0 2.0 2.0 4.0 124 chr2R 11540809 intergenic not near genes chr2R 11540871 intergenic not near genes chr2R 11540933 intergenic not near genes chr2R_12_11540001 chr2R_11540001 RAL-765 464 chr2R 11568700 11568724 chr2R 11568810 11568834 5 110 0.5 0.5 0.5 3.3 134 chr2R 11568700 intergenic not near genes chr2R 11568767 intergenic not near genes chr2R 11568834 intergenic not near genes chr2R_5_11565001 chr2R_11565001 RAL-765 465 chr2R 11661913 11661946 chr2R 11661999 11662032 6 86 0.5 1.0 0.8 3.3 119 chr2R 11661913 intron Roc2 - chr2R 11661972 intron Roc2 - chr2R 11662032 intron Roc2 - chr2R_6_11660001 chr2R_11660001 RAL-765 466 chr2R 12104678 12104700 chr2R 12104758 12104780 7 79 5.5 2.5 4.0 1.4 102 chr2R 12104678 intron jeb - chr2R 12104729 intron jeb - chr2R 12104780 intron jeb - chr2R_7_12100001 chr2R_12100001 RAL-765 467 chr2R 12186010 12186019 chr2R 12186105 12186114 4 95 5.5 1.5 3.5 0.9 104 chr2R 12186010 intron Cyp6g1 + chr2R 12186062 intron Cyp6g1 + chr2R 12186114 intron Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-765 468 chr2R 12187471 12187508 chr2R 12190087 12190124 58 2618 130.0 91.5 110.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_58_12185001 chr2R_12185001 RAL-765 469 chr2R 12240762 12240781 chr2R 12240838 12240856 4 76 2.0 0.0 1.0 2.0 94 chr2R 12240762 3` UTR CG13170 + chr2R 12240809 3` UTR CG13170 + chr2R 12240856 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-765 470 chr2R 12272326 12272350 chr2R 12272409 12272432 5 83 2.5 3.5 3.0 1.2 106 chr2R 12272326 intron Cam + chr2R 12272379 intron Cam + chr2R 12272432 intron Cam + chr2R_5_12270001 chr2R_12270001 RAL-765 471 chr2R 12363385 12363413 chr2R 12363816 12363845 15 432 3.0 0.5 1.8 5.4 460 chr2R 12363385 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363845 intergenic not near genes chr2R_15_12360001 chr2R_12360001 RAL-765 472 chr2R 12481144 12481169 chr2R 12482941 12482973 roo 13 1803 2.5 2.5 2.5 3.7 1829 chr2R 12481144 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482973 intron Dh44-R2 + chr2R_13_12480001 chr2R_12480001 RAL-765 473 chr2R 12501706 12501719 chr2R 12503852 12503880 Rt1c 5 2159 3.0 5.0 4.0 1.0 2174 chr2R 12501706 intron fdl - chr2R 12502793 intron fdl - chr2R 12503880 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-765 474 chr2R 12789297 12789320 chr2R 12797660 12797681 roo 4 8362 2.0 3.5 2.8 1.1 8384 chr2R 12789297 intron,3` UTR sca +,CR45137 - chr2R 12793489 intron,intron sca +,CR45137 - chr2R 12797681 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-765 475 chr2R 12951672 12951693 chr2R 12951753 12951774 4 81 1.5 2.5 2.0 1.3 102 chr2R 12951672 intron,intron CG44251 -,CG44250 - chr2R 12951723 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-765 476 chr2R 13089756 13089782 chr2R 13089865 13089892 7 109 1.0 3.0 2.0 2.3 136 chr2R 13089756 intergenic not near genes chr2R 13089824 intergenic not near genes chr2R 13089892 intergenic not near genes chr2R_7_13085001 chr2R_13085001 RAL-765 477 chr2R 13136841 13136870 chr2R 13141636 13141668 Doc 9 4795 2.0 3.0 2.5 2.6 4827 chr2R 13136841 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-765 478 chr2R 13167431 13167455 chr2R 13167523 13167548 6 94 1.5 0.0 0.8 3.3 117 chr2R 13167431 intron GLaz - chr2R 13167490 intron GLaz - chr2R 13167548 intron GLaz - chr2R_6_13165001 chr2R_13165001 RAL-765 479 chr2R 13241072 13241095 chr2R 13241168 13241192 10 96 1.0 2.0 1.5 4.0 120 chr2R 13241072 intergenic GstE14 + chr2R 13241132 intergenic GstE14 + chr2R 13241192 intergenic GstE14 + chr2R_10_13240001 chr2R_13240001 RAL-765 480 chr2R 13305504 13305510 chr2R 13305583 13305592 7 81 6.0 4.0 5.0 1.2 88 chr2R 13305504 intergenic not near genes chr2R 13305548 intergenic not near genes chr2R 13305592 intergenic not near genes chr2R_7_13305001 chr2R_13305001 RAL-765 481 chr2R 13309664 13309683 chr2R 13309781 13309800 5 118 0.5 0.0 0.2 4.2 136 chr2R 13309664 intergenic not near genes chr2R 13309732 intergenic not near genes chr2R 13309800 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-765 482 chr2R 13431488 13431519 chr2R 13431567 13431598 11 79 3.0 1.5 2.2 3.4 110 chr2R 13431488 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431598 intron CG42321 - chr2R_11_13430001 chr2R_13430001 RAL-765 483 chr2R 13432941 13432969 chr2R 13433017 13433030 4 72 1.5 3.0 2.2 1.2 89 chr2R 13432941 intron CG42321 - chr2R 13432986 intron CG42321 - chr2R 13433030 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-765 484 chr2R 13439109 13439137 chr2R 13439224 13439275 7 128 3.5 0.0 1.8 2.5 166 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439192 intergenic cnn -,CG42321 - chr2R 13439275 intergenic cnn -,CG42321 - chr2R_7_13435001 chr2R_13435001 RAL-765 485 chr2R 13532517 13532541 chr2R 13532633 13532657 5 116 0.5 3.5 2.0 1.7 140 chr2R 13532517 intron Vmat - chr2R 13532587 intron Vmat - chr2R 13532657 intron Vmat - chr2R_5_13530001 chr2R_13530001 RAL-765 486 chr2R 13580503 13580534 chr2R 13580848 13580884 jockey 11 349 0.5 5.5 3.0 2.8 381 chr2R 13580503 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580884 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-765 487 chr2R 13632313 13632319 chr2R 13632401 13632407 4 88 4.5 2.5 3.5 0.9 94 chr2R 13632313 intron fas + chr2R 13632360 intron fas + chr2R 13632407 intron fas + chr2R_4_13630001 chr2R_13630001 RAL-765 488 chr2R 13721207 13721224 chr2R 13721290 13721306 6 82 4.0 4.0 4.0 1.2 99 chr2R 13721207 intron fas + chr2R 13721256 intron fas + chr2R 13721306 intron fas + chr2R_6_13720001 chr2R_13720001 RAL-765 489 chr2R 13768978 13769010 chr2R 13769077 13769109 5 99 0.5 4.0 2.2 1.6 131 chr2R 13768978 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-765 490 chr2R 13770514 13770527 chr2R 13770604 13770617 4 90 0.0 3.5 1.8 1.4 103 chr2R 13770514 intron Cpr50Ca + chr2R 13770566 intron Cpr50Ca + chr2R 13770617 intron Cpr50Ca + chr2R_4_13770001 chr2R_13770001 RAL-765 491 chr2R 13868898 13868930 chr2R 13868977 13869009 16 79 0.5 5.0 2.8 4.2 111 chr2R 13868898 intron shot - chr2R 13868954 intron shot - chr2R 13869009 intron shot - chr2R_16_13865001 chr2R_13865001 RAL-765 492 chr2R 13905629 13905634 chr2R 13907589 13907615 Rt1a 4 1976 0.0 11.5 5.8 0.6 1986 chr2R 13905629 intron shot - chr2R 13906622 intron shot - chr2R 13907615 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-765 493 chr2R 14014974 14014996 chr2R 14015768 14015789 5 794 0.0 2.5 1.2 2.3 815 chr2R 14014974 intron mam + chr2R 14015382 intron mam + chr2R 14015789 intron mam + chr2R_5_14015001 chr2R_14015001 RAL-765 494 chr2R 14115768 14115801 chr2R 14115848 14115881 9 78 1.5 2.5 2.0 3.0 113 chr2R 14115768 intron Prosap - chr2R 14115824 intron Prosap - chr2R 14115881 intron Prosap - chr2R_9_14115001 chr2R_14115001 RAL-765 495 chr2R 14308816 14308841 chr2R 14308905 14308930 9 89 1.0 4.5 2.8 2.4 114 chr2R 14308816 intron Shroom + chr2R 14308873 intron Shroom + chr2R 14308930 intron Shroom + chr2R_9_14305001 chr2R_14305001 RAL-765 496 chr2R 14393882 14393898 chr2R 14393949 14393976 5 79 1.0 1.0 1.0 2.5 94 chr2R 14393882 intergenic not near genes chr2R 14393929 intergenic not near genes chr2R 14393976 intergenic not near genes chr2R_5_14390001 chr2R_14390001 RAL-765 497 chr2R 14425624 14425651 chr2R 14425762 14425787 8 137 2.5 2.0 2.2 2.5 163 chr2R 14425624 intergenic not near genes chr2R 14425706 intergenic not near genes chr2R 14425787 intergenic not near genes chr2R_8_14425001 chr2R_14425001 RAL-765 498 chr2R 14565561 14565593 chr2R 14565638 14565666 6 76 5.5 3.0 4.2 1.2 105 chr2R 14565561 intron ttv + chr2R 14565614 intron ttv + chr2R 14565666 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-765 499 chr2R 14681899 14681915 chr2R 14681975 14682002 5 85 6.0 3.0 4.5 0.9 103 chr2R 14681899 intron mspo - chr2R 14681950 intron mspo - chr2R 14682002 intron mspo - chr2R_5_14680001 chr2R_14680001 RAL-765 500 chr2R 14702338 14702358 chr2R 14702420 14702439 4 81 1.5 3.5 2.5 1.1 101 chr2R 14702338 intron mspo - chr2R 14702388 intron mspo - chr2R 14702439 intron mspo - chr2R_4_14700001 chr2R_14700001 RAL-765 501 chr2R 14797601 14797624 chr2R 14797696 14797719 7 94 0.0 0.0 0.0 7.0 118 chr2R 14797601 intron kn - chr2R 14797660 intron kn - chr2R 14797719 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-765 502 chr2R 14870781 14870808 chr2R 14870866 14870893 5 85 4.0 0.0 2.0 1.7 112 chr2R 14870781 intron Inr-a - chr2R 14870837 intron Inr-a - chr2R 14870893 intron Inr-a - chr2R_5_14870001 chr2R_14870001 RAL-765 503 chr2R 14889207 14889241 chr2R 14897815 14897843 Max-element 6 8606 4.0 0.5 2.2 1.9 8636 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893525 intergenic not near genes chr2R 14897843 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-765 504 chr2R 14979762 14979794 chr2R 14979838 14979870 14 76 3.0 5.5 4.2 2.7 108 chr2R 14979762 3` UTR ckn + chr2R 14979816 3` UTR ckn + chr2R 14979870 3` UTR ckn + chr2R_14_14975001 chr2R_14975001 RAL-765 505 chr2R 14987383 14987410 chr2R 14987527 14987554 4 144 2.0 1.5 1.8 1.4 171 chr2R 14987383 intron pcs + chr2R 14987468 intron pcs + chr2R 14987554 intron pcs + chr2R_4_14985001 chr2R_14985001 RAL-765 506 chr2R 15004733 15004749 chr2R 15005062 15005078 jockey 8 329 1.0 4.0 2.5 2.3 345 chr2R 15004733 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005078 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-765 507 chr2R 15015455 15015479 chr2R 15022879 15022903 mdg1 10 7424 2.5 1.5 2.0 3.3 7448 chr2R 15015455 intron hbs + chr2R 15019179 intron hbs + chr2R 15022903 intron hbs + chr2R_10_15015001 chr2R_15015001 RAL-765 508 chr2R 15084990 15085007 chr2R 15092039 15092056 297 4 7049 6.0 0.5 3.2 1.0 7066 chr2R 15084990 intergenic not near genes chr2R 15088523 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-765 509 chr2R 15114092 15114117 chr2R 15114168 15114193 6 76 1.0 1.5 1.2 2.7 101 chr2R 15114092 intergenic not near genes chr2R 15114142 intergenic not near genes chr2R 15114193 intergenic not near genes chr2R_6_15110001 chr2R_15110001 RAL-765 510 chr2R 15119317 15119349 chr2R 15127798 15127830 Tirant 9 8480 3.0 4.0 3.5 2.0 8513 chr2R 15119317 intron chn + chr2R 15123574 intron chn + chr2R 15127830 intron chn + chr2R_9_15120001 chr2R_15120001 RAL-765 511 chr2R 15137974 15137998 chr2R 15138054 15138080 8 80 4.5 0.0 2.2 2.5 106 chr2R 15137974 intron chn + chr2R 15138027 intron chn + chr2R 15138080 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-765 512 chr2R 15330206 15330237 chr2R 15330340 15330371 6 133 1.0 1.0 1.0 3.0 165 chr2R 15330206 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330371 intergenic CR44371 - chr2R_6_15330001 chr2R_15330001 RAL-765 513 chr2R 15363665 15363681 chr2R 15363742 15363762 4 80 6.0 2.5 4.2 0.8 97 chr2R 15363665 intron unc-5 + chr2R 15363714 intron unc-5 + chr2R 15363762 intron unc-5 + chr2R_4_15360001 chr2R_15360001 RAL-765 514 chr2R 15577796 15577816 chr2R 15577912 15577935 7 118 0.5 3.0 1.8 2.5 139 chr2R 15577796 intergenic not near genes chr2R 15577866 intergenic not near genes chr2R 15577935 intergenic not near genes chr2R_7_15575001 chr2R_15575001 RAL-765 515 chr2R 15653909 15653940 chr2R 15653994 15654025 16 84 3.0 2.5 2.8 4.2 116 chr2R 15653909 intron CG42524 + chr2R 15653967 intron CG42524 + chr2R 15654025 intron CG42524 + chr2R_16_15650001 chr2R_15650001 RAL-765 516 chr2R 15685367 15685377 chr2R 15685470 15685475 4 102 3.5 1.5 2.5 1.1 108 chr2R 15685367 intron,exon Ranbp11 +,CG30082 - chr2R 15685421 intron,intron Ranbp11 +,CG30082 - chr2R 15685475 intron,intron Ranbp11 +,CG30082 - chr2R_4_15685001 chr2R_15685001 RAL-765 517 chr2R 15704306 15704322 chr2R 15704711 15704727 6 403 6.5 2.5 4.5 1.1 421 chr2R 15704306 intergenic not near genes chr2R 15704516 intergenic not near genes chr2R 15704727 intergenic not near genes chr2R_6_15700001 chr2R_15700001 RAL-765 518 chr2R 15733939 15733971 chr2R 15734095 15734127 9 155 2.0 0.0 1.0 4.5 188 chr2R 15733939 intron CG30089 + chr2R 15734033 intron CG30089 + chr2R 15734127 intron CG30089 + chr2R_9_15730001 chr2R_15730001 RAL-765 519 chr2R 15833520 15833552 chr2R 15833607 15833637 11 85 3.0 5.0 4.0 2.2 117 chr2R 15833520 intron,intron tun +,Poxn - chr2R 15833578 intron,intron tun +,Poxn - chr2R 15833637 intron,intron tun +,Poxn - chr2R_11_15830001 chr2R_15830001 RAL-765 520 chr2R 15849408 15849441 chr2R 15849495 15849528 17 85 2.5 0.5 1.5 6.8 120 chr2R 15849408 5` UTR tun + chr2R 15849468 5` UTR tun + chr2R 15849528 5` UTR tun + chr2R_17_15845001 chr2R_15845001 RAL-765 521 chr2R 15902895 15902910 chr2R 15902965 15902986 7 74 0.5 4.0 2.2 2.2 91 chr2R 15902895 intron sli - chr2R 15902940 intron sli - chr2R 15902986 intron sli - chr2R_7_15900001 chr2R_15900001 RAL-765 522 chr2R 15941664 15941673 chr2R 15941749 15941758 4 84 7.5 3.5 5.5 0.6 94 chr2R 15941664 intergenic CG8299 - chr2R 15941711 intergenic CG8299 - chr2R 15941758 intergenic CG8299 - chr2R_4_15940001 chr2R_15940001 RAL-765 523 chr2R 15941674 15941689 chr2R 15941747 15941774 9 83 5.0 3.0 4.0 1.8 100 chr2R 15941674 intergenic CG8299 - chr2R 15941724 intergenic CG8299 - chr2R 15941774 intergenic CG8299 - chr2R_9_15940001 chr2R_15940001 RAL-765 524 chr2R 15951837 15951866 chr2R 15951911 15951939 6 75 0.0 1.5 0.8 3.3 102 chr2R 15951837 intron Strn-Mlck - chr2R 15951888 intron Strn-Mlck - chr2R 15951939 intron Strn-Mlck - chr2R_6_15950001 chr2R_15950001 RAL-765 525 chr2R 16054955 16054962 chr2R 16055035 16055045 11 82 9.0 11.5 10.2 1.0 90 chr2R 16054955 intron CG8405 + chr2R 16055000 intron CG8405 + chr2R 16055045 intron CG8405 + chr2R_11_16050001 chr2R_16050001 RAL-765 526 chr2R 16217786 16217794 chr2R 16217861 16217870 4 76 1.0 3.0 2.0 1.3 84 chr2R 16217786 intron mrj - chr2R 16217828 intron mrj - chr2R 16217870 intron mrj - chr2R_4_16215001 chr2R_16215001 RAL-765 527 chr2R 16483580 16483589 chr2R 16483662 16483671 6 82 2.0 4.0 3.0 1.5 91 chr2R 16483580 intergenic not near genes chr2R 16483626 intergenic not near genes chr2R 16483671 intergenic not near genes chr2R_6_16480001 chr2R_16480001 RAL-765 528 chr2R 16486858 16486881 chr2R 16486953 16486976 5 95 1.5 2.5 2.0 1.7 118 chr2R 16486858 exon CG33458 + chr2R 16486917 intron CG33458 + chr2R 16486976 intron CG33458 + chr2R_5_16485001 chr2R_16485001 RAL-765 529 chr2R 16571872 16571902 chr2R 16571966 16571997 6 95 2.5 1.0 1.8 2.1 125 chr2R 16571872 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16571997 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-765 530 chr2R 16768463 16768493 chr2R 16769728 16769762 15 1266 15.0 16.0 15.5 0.9 1299 chr2R 16768463 intron,3` UTR unc-104 -,CG5348 + chr2R 16769112 intron,3` UTR unc-104 -,CG5348 + chr2R 16769762 intron unc-104 - chr2R_15_16765001 chr2R_16765001 RAL-765 531 chr2R 16808031 16808054 chr2R 16808135 16808158 6 104 2.0 2.0 2.0 2.0 127 chr2R 16808031 intergenic not near genes chr2R 16808094 intergenic not near genes chr2R 16808158 intergenic not near genes chr2R_6_16805001 chr2R_16805001 RAL-765 532 chr2R 16910241 16910244 chr2R 16910340 16910343 4 99 2.5 6.0 4.2 0.8 102 chr2R 16910241 intergenic not near genes chr2R 16910292 intergenic not near genes chr2R 16910343 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-765 533 chr2R 16918237 16918268 chr2R 16918312 16918344 8 75 0.5 2.0 1.2 3.6 107 chr2R 16918237 intergenic not near genes chr2R 16918290 intergenic not near genes chr2R 16918344 intergenic not near genes chr2R_8_16915001 chr2R_16915001 RAL-765 534 chr2R 16972271 16972294 chr2R 16972435 16972458 4 164 1.0 3.0 2.0 1.3 187 chr2R 16972271 intergenic not near genes chr2R 16972364 intergenic not near genes chr2R 16972458 intergenic not near genes chr2R_4_16970001 chr2R_16970001 RAL-765 535 chr2R 17147248 17147276 chr2R 17152277 17152307 jockey 4 5030 2.0 2.5 2.2 1.2 5059 chr2R 17147248 intergenic not near genes chr2R 17149778 intergenic not near genes chr2R 17152307 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-765 536 chr2R 17152715 17152734 chr2R 17152839 17152858 8 124 5.5 0.0 2.8 2.1 143 chr2R 17152715 intergenic not near genes chr2R 17152786 intergenic not near genes chr2R 17152858 intergenic not near genes chr2R_8_17150001 chr2R_17150001 RAL-765 537 chr2R 17194635 17194657 chr2R 17194739 17194762 9 104 2.5 1.0 1.8 3.2 127 chr2R 17194635 intergenic not near genes chr2R 17194698 intergenic not near genes chr2R 17194762 intergenic CG10950 + chr2R_9_17190001 chr2R_17190001 RAL-765 538 chr2R 17459006 17459037 chr2R 17459091 17459120 7 82 2.0 4.0 3.0 1.8 114 chr2R 17459006 intron CG14478 + chr2R 17459063 intron CG14478 + chr2R 17459120 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-765 539 chr2R 17459181 17459205 chr2R 17459415 17459439 7 234 1.0 3.0 2.0 2.3 258 chr2R 17459181 intron CG14478 + chr2R 17459310 intron CG14478 + chr2R 17459439 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-765 540 chr2R 17470337 17470353 chr2R 17470421 17470437 4 84 1.5 1.0 1.2 1.8 100 chr2R 17470337 intron qkr54B + chr2R 17470387 intron qkr54B + chr2R 17470437 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-765 541 chr2R 17500680 17500694 chr2R 17500756 17500770 5 76 0.5 2.0 1.2 2.3 90 chr2R 17500680 intergenic not near genes chr2R 17500725 intergenic not near genes chr2R 17500770 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-765 542 chr2R 17784029 17784056 chr2R 17784267 17784291 pogo 6 238 0.5 4.0 2.2 1.9 262 chr2R 17784029 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784291 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-765 543 chr2R 17785093 17785101 chr2R 17785181 17785189 6 88 3.5 3.0 3.2 1.4 96 chr2R 17785093 intergenic not near genes chr2R 17785141 intergenic not near genes chr2R 17785189 intergenic not near genes chr2R_6_17785001 chr2R_17785001 RAL-765 544 chr2R 17897458 17897489 chr2R 17897574 17897589 7 113 3.5 0.5 2.0 2.3 131 chr2R 17897458 intron Elk + chr2R 17897524 intron Elk + chr2R 17897589 intron Elk + chr2R_7_17895001 chr2R_17895001 RAL-765 545 chr2R 17918169 17918193 chr2R 17918246 17918270 6 77 1.0 0.5 0.8 3.3 101 chr2R 17918169 intron Elk + chr2R 17918220 intron Elk + chr2R 17918270 intron Elk + chr2R_6_17915001 chr2R_17915001 RAL-765 546 chr2R 17937522 17937536 chr2R 17937602 17937616 7 80 4.0 1.5 2.8 1.8 94 chr2R 17937522 intergenic not near genes chr2R 17937569 intergenic not near genes chr2R 17937616 intergenic not near genes chr2R_7_17935001 chr2R_17935001 RAL-765 547 chr2R 17982929 17982951 chr2R 17983014 17983035 5 85 1.0 3.0 2.0 1.7 106 chr2R 17982929 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983035 intron dpr13 - chr2R_5_17980001 chr2R_17980001 RAL-765 548 chr2R 17991318 17991344 chr2R 17991401 17991430 6 85 4.0 2.5 3.2 1.4 112 chr2R 17991318 intron dpr13 - chr2R 17991374 intron dpr13 - chr2R 17991430 intron dpr13 - chr2R_6_17990001 chr2R_17990001 RAL-765 549 chr2R 18156166 18156197 chr2R 18156456 18156487 18 292 40.0 39.5 39.8 0.4 321 chr2R 18156166 intron lolal - chr2R 18156326 intron lolal - chr2R 18156487 intron lolal - chr2R_18_18155001 chr2R_18155001 RAL-765 550 chr2R 18168395 18168422 chr2R 18168505 18168532 7 110 3.5 1.0 2.2 2.2 137 chr2R 18168395 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168464 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168532 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R_7_18165001 chr2R_18165001 RAL-765 551 chr2R 18308284 18308319 chr2R 18308390 18308425 10 104 3.5 1.0 2.2 3.1 141 chr2R 18308284 intron sbb - chr2R 18308354 intron sbb - chr2R 18308425 intron sbb - chr2R_10_18305001 chr2R_18305001 RAL-765 552 chr2R 18358388 18358422 chr2R 18372600 18372634 roo 7 14212 1.5 3.0 2.2 2.2 14246 chr2R 18358388 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-765 553 chr2R 18575814 18575824 chr2R 18581985 18582012 3S18 7 6180 1.0 2.5 1.8 2.5 6198 chr2R 18575814 intron GEFmeso - chr2R 18578913 intron GEFmeso - chr2R 18582012 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-765 554 chr2R 18590870 18590900 chr2R 18600022 18600052 roo 5 9152 1.5 2.0 1.8 1.8 9182 chr2R 18590870 intron GEFmeso - chr2R 18595461 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-765 555 chr2R 18651504 18651524 chr2R 18651801 18651821 5 297 2.0 1.0 1.5 2.0 317 chr2R 18651504 intron SP2637 - chr2R 18651662 intron SP2637 - chr2R 18651821 intron SP2637 - chr2R_5_18650001 chr2R_18650001 RAL-765 556 chr2R 18689372 18689382 chr2R 18689480 18689490 4 108 1.5 0.5 1.0 2.0 118 chr2R 18689372 intron Sik3 + chr2R 18689431 intron Sik3 + chr2R 18689490 intron Sik3 + chr2R_4_18685001 chr2R_18685001 RAL-765 557 chr2R 18808073 18808086 chr2R 18808162 18808175 4 89 0.0 0.0 0.0 4.0 102 chr2R 18808073 intergenic CG15096 - chr2R 18808124 intergenic CG15096 - chr2R 18808175 intergenic CG15096 - chr2R_4_18805001 chr2R_18805001 RAL-765 558 chr2R 18874610 18874626 chr2R 18874708 18874723 4 98 2.0 0.0 1.0 2.0 113 chr2R 18874610 intergenic not near genes chr2R 18874666 intergenic not near genes chr2R 18874723 intergenic not near genes chr2R_4_18870001 chr2R_18870001 RAL-765 559 chr2R 18931199 18931217 chr2R 18931291 18931309 4 92 3.0 4.5 3.8 0.8 110 chr2R 18931199 intron sano + chr2R 18931254 intron sano + chr2R 18931309 intron sano + chr2R_4_18930001 chr2R_18930001 RAL-765 560 chr2R 18953159 18953192 chr2R 18953246 18953279 6 86 1.0 0.0 0.5 4.0 120 chr2R 18953159 intron sano + chr2R 18953219 intron sano + chr2R 18953279 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-765 561 chr2R 18964922 18964949 chr2R 18964998 18965025 7 75 1.5 2.0 1.8 2.5 103 chr2R 18964922 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965025 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-765 562 chr2R 19076398 19076426 chr2R 19076487 19076515 15 89 3.0 0.5 1.8 5.4 117 chr2R 19076398 intron 5-HT1A + chr2R 19076456 intron 5-HT1A + chr2R 19076515 intron 5-HT1A + chr2R_15_19075001 chr2R_19075001 RAL-765 563 chr2R 19153906 19153933 chr2R 19154362 19154389 5 453 0.0 3.5 1.8 1.8 483 chr2R 19153906 intron ena + chr2R 19154148 intron ena + chr2R 19154389 intron ena + chr2R_5_19150001 chr2R_19150001 RAL-765 564 chr2R 19171531 19171564 chr2R 19171884 19171918 13 351 2.5 4.5 3.5 2.9 387 chr2R 19171531 intron CG10737 + chr2R 19171724 intron CG10737 + chr2R 19171918 intron CG10737 + chr2R_13_19170001 chr2R_19170001 RAL-765 565 chr2R 19220899 19220920 chr2R 19221156 19221177 6 257 3.5 4.0 3.8 1.2 278 chr2R 19220899 intron hppy + chr2R 19221038 intron hppy + chr2R 19221177 intron hppy + chr2R_6_19220001 chr2R_19220001 RAL-765 566 chr2R 19296456 19296471 chr2R 19296528 19296547 4 75 0.5 3.5 2.0 1.3 91 chr2R 19296456 intron Tab2 + chr2R 19296502 intron Tab2 + chr2R 19296547 intron Tab2 + chr2R_4_19295001 chr2R_19295001 RAL-765 567 chr2R 19331234 19331265 chr2R 19331314 19331343 15 80 4.0 3.0 3.5 3.3 109 chr2R 19331234 intron,intron Rgk1 -,CG34045 + chr2R 19331288 intron,intron Rgk1 -,CG34045 + chr2R 19331343 intron,intron Rgk1 -,CG34045 + chr2R_15_19330001 chr2R_19330001 RAL-765 568 chr2R 19373692 19373715 chr2R 19373873 19373896 9 181 0.5 3.0 1.8 3.2 204 chr2R 19373692 5` UTR CG9416 - chr2R 19373794 intergenic CG9416 - chr2R 19373896 intergenic CG9416 - chr2R_9_19370001 chr2R_19370001 RAL-765 569 chr2R 19385285 19385313 chr2R 19385568 19385595 5 283 0.0 0.5 0.2 4.2 310 chr2R 19385285 intergenic CG10073 + chr2R 19385440 intergenic CG10073 +,CG10081 + chr2R 19385595 intergenic CG10081 + chr2R_5_19385001 chr2R_19385001 RAL-765 570 chr2R 19424467 19424494 chr2R 19424552 19424579 6 83 3.5 2.0 2.8 1.6 112 chr2R 19424467 intron hts - chr2R 19424523 intron hts - chr2R 19424579 intron hts - chr2R_6_19420001 chr2R_19420001 RAL-765 571 chr2R 19555581 19555612 chr2R 19555665 19555696 5 84 1.0 1.0 1.0 2.5 115 chr2R 19555581 intron sm - chr2R 19555638 intron sm - chr2R 19555696 intron sm - chr2R_5_19555001 chr2R_19555001 RAL-765 572 chr2R 19582946 19582965 chr2R 19583237 19583256 6 291 4.0 5.5 4.8 1.0 310 chr2R 19582946 intron sm - chr2R 19583101 intron sm - chr2R 19583256 intron sm - chr2R_6_19580001 chr2R_19580001 RAL-765 573 chr2R 19776598 19776621 chr2R 19779921 19779942 jockey 7 3323 2.5 4.0 3.2 1.7 3344 chr2R 19776598 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779942 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-765 574 chr2R 19957432 19957454 chr2R 19962634 19962656 copia 5 5201 1.0 1.0 1.0 2.5 5224 chr2R 19957432 intergenic CG44623 + chr2R 19960044 intergenic not near genes chr2R 19962656 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-765 575 chr2R 20008181 20008210 chr2R 20008270 20008299 6 89 2.5 1.0 1.8 2.1 118 chr2R 20008181 intergenic not near genes chr2R 20008240 intergenic not near genes chr2R 20008299 intergenic not near genes chr2R_6_20005001 chr2R_20005001 RAL-765 576 chr2R 20009497 20009524 chr2R 20009573 20009603 8 78 0.5 2.0 1.2 3.6 106 chr2R 20009497 intergenic not near genes chr2R 20009550 intergenic not near genes chr2R 20009603 intergenic not near genes chr2R_8_20005001 chr2R_20005001 RAL-765 577 chr2R 20101858 20101893 chr2R 20101940 20101975 11 82 4.0 1.5 2.8 2.9 117 chr2R 20101858 intergenic not near genes chr2R 20101916 intergenic not near genes chr2R 20101975 intergenic not near genes chr2R_11_20100001 chr2R_20100001 RAL-765 578 chr2R 20182921 20182939 chr2R 20183083 20183101 6 162 1.5 4.5 3.0 1.5 180 chr2R 20182921 intergenic not near genes chr2R 20183011 intergenic not near genes chr2R 20183101 intergenic not near genes chr2R_6_20180001 chr2R_20180001 RAL-765 579 chr2R 20405082 20405113 chr2R 20405998 20406029 13 916 2.0 4.0 3.0 3.2 947 chr2R 20405082 intergenic not near genes chr2R 20405556 intergenic not near genes chr2R 20406029 intergenic not near genes chr2R_13_20405001 chr2R_20405001 RAL-765 580 chr2R 20523044 20523071 chr2R 20523155 20523182 8 108 3.5 1.5 2.5 2.3 138 chr2R 20523044 intergenic not near genes chr2R 20523113 intergenic not near genes chr2R 20523182 intergenic not near genes chr2R_8_20520001 chr2R_20520001 RAL-765 581 chr2R 20601722 20601751 chr2R 20601806 20601836 7 85 0.5 1.0 0.8 3.9 114 chr2R 20601722 intron bl + chr2R 20601779 intron bl + chr2R 20601836 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-765 582 chr2R 20604189 20604215 chr2R 20604273 20604299 7 81 5.0 3.0 4.0 1.4 110 chr2R 20604189 intron bl + chr2R 20604244 intron bl + chr2R 20604299 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-765 583 chr2R 20739441 20739469 chr2R 20744209 20744237 F-element 5 4768 2.0 1.5 1.8 1.8 4796 chr2R 20739441 intron dpr + chr2R 20741839 intron dpr + chr2R 20744237 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-765 584 chr2R 20783311 20783330 chr2R 20788083 20788102 F-element 5 4772 1.0 1.5 1.2 2.3 4791 chr2R 20783311 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788102 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-765 585 chr2R 20863120 20863140 chr2R 20863206 20863226 9 84 2.0 4.5 3.2 2.1 106 chr2R 20863120 intergenic not near genes chr2R 20863173 intergenic not near genes chr2R 20863226 intergenic not near genes chr2R_9_20860001 chr2R_20860001 RAL-765 586 chr2R 20962907 20962939 chr2R 20963005 20963037 9 98 2.0 5.0 3.5 2.0 130 chr2R 20962907 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-765 587 chr2R 21047567 21047572 chr2R 21047651 21047656 6 85 10.5 1.5 6.0 0.9 89 chr2R 21047567 intergenic not near genes chr2R 21047612 intergenic not near genes chr2R 21047656 intergenic not near genes chr2R_6_21045001 chr2R_21045001 RAL-765 588 chr2R 21079326 21079352 chr2R 21079402 21079428 10 76 2.0 2.0 2.0 3.3 102 chr2R 21079326 intron Treh + chr2R 21079377 intron Treh + chr2R 21079428 intron Treh + chr2R_10_21075001 chr2R_21075001 RAL-765 589 chr2R 21083163 21083195 chr2R 21083249 21083281 7 84 0.5 3.5 2.0 2.3 118 chr2R 21083163 intron Treh + chr2R 21083222 intron Treh + chr2R 21083281 intron Treh + chr2R_7_21080001 chr2R_21080001 RAL-765 590 chr2R 21110797 21110823 chr2R 21110885 21110916 15 92 2.5 2.5 2.5 4.3 119 chr2R 21110797 intron ktub + chr2R 21110856 intron ktub + chr2R 21110916 intron ktub + chr2R_15_21110001 chr2R_21110001 RAL-765 591 chr2R 21151129 21151135 chr2R 21153762 21153768 opus 4 2633 0.0 1.5 0.8 2.2 2639 chr2R 21151129 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153768 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-765 592 chr2R 21373400 21373414 chr2R 21373718 21373732 8 317 2.5 1.0 1.8 2.9 332 chr2R 21373400 intron cv-2 - chr2R 21373566 intron cv-2 - chr2R 21373732 intron cv-2 - chr2R_8_21370001 chr2R_21370001 RAL-765 593 chr2R 21505766 21505791 chr2R 21505847 21505870 10 80 2.0 2.0 2.0 3.3 104 chr2R 21505766 intron MESK2 + chr2R 21505818 intron MESK2 + chr2R 21505870 intron MESK2 + chr2R_10_21505001 chr2R_21505001 RAL-765 594 chr2R 21546786 21546808 chr2R 21546867 21546873 10 77 5.5 1.0 3.2 2.4 87 chr2R 21546786 intron Egfr + chr2R 21546830 intron Egfr + chr2R 21546873 intron Egfr + chr2R_10_21545001 chr2R_21545001 RAL-765 595 chr2R 21585236 21585248 chr2R 21585315 21585327 5 79 0.5 3.0 1.8 1.8 91 chr2R 21585236 3` UTR CG30222 + chr2R 21585282 3` UTR CG30222 + chr2R 21585327 3` UTR CG30222 + chr2R_5_21585001 chr2R_21585001 RAL-765 596 chr2R 21592846 21592855 chr2R 21592926 21592937 7 82 8.0 9.0 8.5 0.7 91 chr2R 21592846 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592937 intergenic not near genes chr2R_7_21590001 chr2R_21590001 RAL-765 597 chr2R 21753094 21753109 chr2R 21753579 21753594 roo 5 485 2.0 2.0 2.0 1.7 500 chr2R 21753094 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753594 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-765 598 chr2R 21809526 21809556 chr2R 21817766 21817796 roo 6 8240 1.0 1.0 1.0 3.0 8270 chr2R 21809526 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817796 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-765 599 chr2R 21857348 21857367 chr2R 21857438 21857458 5 91 1.5 4.0 2.8 1.3 110 chr2R 21857348 intergenic not near genes chr2R 21857403 intergenic not near genes chr2R 21857458 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-765 600 chr2R 21906274 21906291 chr2R 21906375 21906392 4 101 0.0 0.5 0.2 3.3 118 chr2R 21906274 intron Fili + chr2R 21906333 intron Fili + chr2R 21906392 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-765 601 chr2R 21922894 21922913 chr2R 21923073 21923091 4 178 2.0 3.0 2.5 1.1 197 chr2R 21922894 intron Fili + chr2R 21922992 intron Fili + chr2R 21923091 intron Fili + chr2R_4_21920001 chr2R_21920001 RAL-765 602 chr2R 21932269 21932282 chr2R 21932337 21932360 5 76 0.0 3.5 1.8 1.8 91 chr2R 21932269 intron Fili + chr2R 21932314 intron Fili + chr2R 21932360 intron Fili + chr2R_5_21930001 chr2R_21930001 RAL-765 603 chr2R 22014207 22014227 chr2R 22014283 22014303 9 76 1.5 3.0 2.2 2.8 96 chr2R 22014207 intron CG34370 - chr2R 22014255 intron CG34370 - chr2R 22014303 intron CG34370 - chr2R_9_22010001 chr2R_22010001 RAL-765 604 chr2R 22035545 22035572 chr2R 22035632 22035659 4 87 0.5 3.5 2.0 1.3 114 chr2R 22035545 intron,3` UTR CG34370 -,CG9308 + chr2R 22035602 intron,3` UTR CG34370 -,CG9308 + chr2R 22035659 intron,3` UTR CG34370 -,CG9308 + chr2R_4_22035001 chr2R_22035001 RAL-765 605 chr2R 22072689 22072714 chr2R 22072774 22072799 13 85 2.5 3.5 3.0 3.2 110 chr2R 22072689 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072799 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-765 606 chr2R 22102115 22102159 chr2R 22102203 22102237 11 86 0.0 4.0 2.0 3.7 122 chr2R 22102115 intergenic not near genes chr2R 22102176 intergenic not near genes chr2R 22102237 intergenic not near genes chr2R_11_22100001 chr2R_22100001 RAL-765 607 chr2R 22118423 22118450 chr2R 22118501 22118528 6 78 1.5 1.5 1.5 2.4 105 chr2R 22118423 intron Vrp1 - chr2R 22118476 intron Vrp1 - chr2R 22118528 intron Vrp1 - chr2R_6_22115001 chr2R_22115001 RAL-765 608 chr2R 22179224 22179234 chr2R 22179304 22179315 4 81 0.0 0.0 0.0 4.0 91 chr2R 22179224 intron CG11170 - chr2R 22179270 intron CG11170 - chr2R 22179315 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-765 609 chr2R 22292071 22292104 chr2R 22292158 22292191 14 87 3.5 4.0 3.8 2.9 120 chr2R 22292071 5` UTR CR43422 + chr2R 22292131 5` UTR CR43422 + chr2R 22292191 5` UTR CR43422 + chr2R_14_22290001 chr2R_22290001 RAL-765 610 chr2R 22349690 22349719 chr2R 22351474 22351503 jockey 6 1784 2.0 3.5 2.8 1.6 1813 chr2R 22349690 intron Liprin-gamma - chr2R 22350596 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-765 611 chr2R 22360385 22360398 chr2R 22360818 22360831 jockey 6 433 0.5 2.5 1.5 2.4 446 chr2R 22360385 intron Liprin-gamma - chr2R 22360608 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-765 612 chr2R 22411493 22411522 chr2R 22411571 22411600 6 78 2.5 2.0 2.2 1.9 107 chr2R 22411493 5` UTR qkr58E-3 - chr2R 22411546 intergenic qkr58E-3 -,Mes4 + chr2R 22411600 intergenic qkr58E-3 -,Mes4 + chr2R_6_22410001 chr2R_22410001 RAL-765 613 chr2R 22506722 22506737 chr2R 22506799 22506815 4 78 2.0 0.0 1.0 2.0 93 chr2R 22506722 intron px - chr2R 22506768 intron px - chr2R 22506815 intron px - chr2R_4_22505001 chr2R_22505001 RAL-765 614 chr2R 22524975 22524984 chr2R 22525051 22525059 6 76 5.0 2.5 3.8 1.2 84 chr2R 22524975 intron px - chr2R 22525017 intron px - chr2R 22525059 intron px - chr2R_6_22525001 chr2R_22525001 RAL-765 615 chr2R 22525760 22525787 chr2R 22529318 22529345 jockey 5 3559 1.0 2.0 1.5 2.0 3585 chr2R 22525760 intron px - chr2R 22527552 intron px - chr2R 22529345 intron px - chr2R_5_22525001 chr2R_22525001 RAL-765 616 chr2R 22623451 22623485 chr2R 22623591 22623624 13 135 3.5 4.5 4.0 2.6 173 chr2R 22623451 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623624 intron CG33143 + chr2R_13_22620001 chr2R_22620001 RAL-765 617 chr2R 22679752 22679783 chr2R 22679829 22679856 12 74 6.0 5.5 5.8 1.8 104 chr2R 22679752 intergenic not near genes chr2R 22679804 intergenic not near genes chr2R 22679856 intergenic not near genes chr2R_12_22675001 chr2R_22675001 RAL-765 618 chr2R 22691488 22691514 chr2R 22692240 22692265 4 752 1.0 5.5 3.2 1.0 777 chr2R 22691488 5` UTR CR44764 + chr2R 22691876 5` UTR CR44764 + chr2R 22692265 intergenic robo -,CR44764 + chr2R_4_22690001 chr2R_22690001 RAL-765 619 chr2R 22756555 22756578 chr2R 22756632 22756654 8 77 3.5 7.5 5.5 1.2 99 chr2R 22756555 intron,intron CG42260 -,CR30267 + chr2R 22756604 intron,intron CG42260 -,CR30267 + chr2R 22756654 intron,intron CG42260 -,CR30267 + chr2R_8_22755001 chr2R_22755001 RAL-765 620 chr2R 22774966 22775000 chr2R 22775385 22775419 jockey 14 419 5.5 3.5 4.5 2.5 453 chr2R 22774966 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_14_22775001 chr2R_22775001 RAL-765 621 chr2R 22789833 22789856 chr2R 22790123 22790147 4 291 1.5 3.0 2.2 1.2 314 chr2R 22789833 intron CG42260 - chr2R 22789990 intron CG42260 - chr2R 22790147 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-765 622 chr2R 22873629 22873663 chr2R 22873705 22873739 4 76 2.0 0.0 1.0 2.0 110 chr2R 22873629 exon CG13532 + chr2R 22873684 intron CG13532 + chr2R 22873739 intron CG13532 + chr2R_4_22870001 chr2R_22870001 RAL-765 623 chr2R 22907409 22907445 chr2R 22907494 22907530 13 83 3.0 5.0 4.0 2.6 121 chr2R 22907409 intron nahoda + chr2R 22907470 intron nahoda + chr2R 22907530 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-765 624 chr2R 22909422 22909454 chr2R 22909561 22909593 14 138 3.5 0.5 2.0 4.7 171 chr2R 22909422 intron nahoda + chr2R 22909508 intron nahoda + chr2R 22909593 intron nahoda + chr2R_14_22905001 chr2R_22905001 RAL-765 625 chr2R 22941819 22941846 chr2R 22941898 22941924 4 79 0.0 0.5 0.2 3.3 105 chr2R 22941819 intergenic CG42694 + chr2R 22941872 intergenic CG42694 + chr2R 22941924 5` UTR CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-765 626 chr2R 22952582 22952596 chr2R 22952659 22952673 4 77 2.0 6.0 4.0 0.8 91 chr2R 22952582 intron CR32835 - chr2R 22952628 intron CR32835 - chr2R 22952673 intron CR32835 - chr2R_4_22950001 chr2R_22950001 RAL-765 627 chr2R 23045832 23045853 chr2R 23045917 23045937 10 85 0.0 3.5 1.8 3.6 105 chr2R 23045832 intron twi + chr2R 23045884 intron twi + chr2R 23045937 intron twi + chr2R_10_23045001 chr2R_23045001 RAL-765 628 chr2R 23052297 23052327 chr2R 23052585 23052614 8 288 2.5 4.5 3.5 1.8 317 chr2R 23052297 intergenic not near genes chr2R 23052456 intergenic not near genes chr2R 23052614 intergenic not near genes chr2R_8_23050001 chr2R_23050001 RAL-765 629 chr2R 23061752 23061787 chr2R 23061828 23061863 13 76 1.5 3.0 2.2 4.1 111 chr2R 23061752 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061863 3` UTR l(2)06496 - chr2R_13_23060001 chr2R_23060001 RAL-765 630 chr2R 23175045 23175057 chr2R 23175118 23175134 5 76 2.5 5.5 4.0 1.0 89 chr2R 23175045 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175134 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-765 631 chr2R 23217208 23217230 chr2R 23217322 23217343 5 114 2.0 2.0 2.0 1.7 135 chr2R 23217208 intergenic not near genes chr2R 23217276 intergenic not near genes chr2R 23217343 intergenic not near genes chr2R_5_23215001 chr2R_23215001 RAL-765 632 chr2R 23350510 23350539 chr2R 23350637 23350666 19 125 2.0 2.0 2.0 6.3 156 chr2R 23350510 intergenic not near genes chr2R 23350588 intergenic not near genes chr2R 23350666 intergenic not near genes chr2R_19_23350001 chr2R_23350001 RAL-765 633 chr2R 23356273 23356305 chr2R 23356362 23356394 12 89 3.0 4.0 3.5 2.7 121 chr2R 23356273 3` UTR Rpi + chr2R 23356334 3` UTR Rpi + chr2R 23356394 3` UTR,3` UTR Rpi +,CG3500 - chr2R_12_23355001 chr2R_23355001 RAL-765 634 chr2R 23422644 23422675 chr2R 23422724 23422754 13 79 8.5 3.5 6.0 1.9 110 chr2R 23422644 intron CG9815 - chr2R 23422699 intron CG9815 - chr2R 23422754 intron CG9815 - chr2R_13_23420001 chr2R_23420001 RAL-765 635 chr2R 23423739 23423773 chr2R 23423897 23423929 10 158 3.0 3.0 3.0 2.5 190 chr2R 23423739 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423929 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-765 636 chr2R 23463385 23463416 chr2R 23463464 23463495 10 79 5.0 1.5 3.2 2.4 110 chr2R 23463385 intron CG43795 + chr2R 23463440 intron CG43795 + chr2R 23463495 intron CG43795 + chr2R_10_23460001 chr2R_23460001 RAL-765 637 chr2R 23508923 23508943 chr2R 23509040 23509060 5 117 3.0 2.0 2.5 1.4 137 chr2R 23508923 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509060 intergenic not near genes chr2R_5_23505001 chr2R_23505001 RAL-765 638 chr2R 23520056 23520081 chr2R 23520148 23520171 12 91 6.5 4.0 5.2 1.9 115 chr2R 23520056 3` UTR RabX1 - chr2R 23520114 3` UTR RabX1 - chr2R 23520171 3` UTR RabX1 - chr2R_12_23520001 chr2R_23520001 RAL-765 639 chr2R 23529573 23529604 chr2R 23537148 23537180 412 7 7576 4.5 5.5 5.0 1.2 7607 chr2R 23529573 intron bw - chr2R 23533376 intron bw - chr2R 23537180 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-765 640 chr2R 23563896 23563916 chr2R 23563975 23563996 8 80 3.5 3.0 3.2 1.9 100 chr2R 23563896 3` UTR Pi3K59F + chr2R 23563946 3` UTR Pi3K59F + chr2R 23563996 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_8_23560001 chr2R_23560001 RAL-765 641 chr2R 23594846 23594868 chr2R 23595063 23595085 6 217 3.5 3.5 3.5 1.3 239 chr2R 23594846 intron apt + chr2R 23594966 intron apt + chr2R 23595085 intron apt + chr2R_6_23590001 chr2R_23590001 RAL-765 642 chr2R 23607039 23607187 chr2R 23607120 23607280 9 82 5.5 5.5 5.5 1.4 241 chr2R 23607039 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607280 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-765 643 chr2R 23653970 23654004 chr2R 23654047 23654080 11 76 8.0 2.0 5.0 1.8 110 chr2R 23653970 3` UTR retn + chr2R 23654025 3` UTR retn + chr2R 23654080 3` UTR retn + chr2R_11_23650001 chr2R_23650001 RAL-765 644 chr2R 23724953 23724971 chr2R 23725072 23725090 10 119 0.0 2.0 1.0 5.0 137 chr2R 23724953 intron Sesn + chr2R 23725022 intron Sesn + chr2R 23725090 intron Sesn + chr2R_10_23725001 chr2R_23725001 RAL-765 645 chr2R 23784474 23784507 chr2R 23784549 23784585 4 77 2.0 1.0 1.5 1.6 111 chr2R 23784474 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-765 646 chr2R 23914312 23914331 chr2R 23921935 23921955 412 10 7624 0.5 5.5 3.0 2.5 7643 chr2R 23914312 exon kcc + chr2R 23918134 intron kcc + chr2R 23921955 intron kcc + chr2R_10_23915001 chr2R_23915001 RAL-765 647 chr2R 24031382 24031408 chr2R 24031465 24031489 12 83 2.0 4.0 3.0 3.0 107 chr2R 24031382 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-765 648 chr2R 24045874 24045899 chr2R 24045958 24045977 12 83 3.0 3.5 3.2 2.9 103 chr2R 24045874 intron tsr - chr2R 24045926 intron tsr - chr2R 24045977 intron tsr - chr2R_12_24045001 chr2R_24045001 RAL-765 649 chr2R 24147071 24147096 chr2R 24154647 24154674 412 9 7578 2.5 2.5 2.5 2.6 7603 chr2R 24147071 intron Dat + chr2R 24150872 intron Dat + chr2R 24154674 intron Dat + chr2R_9_24150001 chr2R_24150001 RAL-765 650 chr2R 24177239 24177265 chr2R 24184724 24184750 412 7 7485 4.0 4.5 4.2 1.3 7511 chr2R 24177239 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184750 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-765 651 chr2R 24277185 24277191 chr2R 24277266 24277271 5 81 5.5 15.0 10.2 0.4 86 chr2R 24277185 intron nvy + chr2R 24277228 intron nvy + chr2R 24277271 intron nvy + chr2R_5_24275001 chr2R_24275001 RAL-765 652 chr2R 24321135 24321169 chr2R 24321233 24321266 7 98 5.0 0.5 2.8 1.8 131 chr2R 24321135 intergenic not near genes chr2R 24321200 intergenic not near genes chr2R 24321266 intergenic not near genes chr2R_7_24320001 chr2R_24320001 RAL-765 653 chr2R 24353428 24353462 chr2R 24361790 24361823 roo 7 8362 1.5 3.5 2.5 2.0 8395 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-765 654 chr2R 24383827 24383857 chr2R 24383908 24383938 8 81 2.5 5.0 3.8 1.7 111 chr2R 24383827 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_8_24380001 chr2R_24380001 RAL-765 655 chr2R 24430806 24430838 chr2R 24430887 24430918 8 81 1.5 1.0 1.2 3.6 112 chr2R 24430806 intergenic CG15873 - chr2R 24430862 intergenic CG15873 -,Pgam5-2 - chr2R 24430918 intergenic CG15873 -,Pgam5-2 - chr2R_8_24430001 chr2R_24430001 RAL-765 656 chr2R 24590110 24590144 chr2R 24590202 24590234 13 90 3.5 4.5 4.0 2.6 124 chr2R 24590110 intron pio + chr2R 24590172 intron pio + chr2R 24590234 intron pio + chr2R_13_24590001 chr2R_24590001 RAL-765 657 chr2R 24591516 24591540 chr2R 24591592 24591616 6 76 1.0 1.0 1.0 3.0 100 chr2R 24591516 intron pio + chr2R 24591566 intron pio + chr2R 24591616 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-765 658 chr2R 24689729 24689752 chr2R 24689818 24689841 5 89 3.5 4.5 4.0 1.0 112 chr2R 24689729 intergenic not near genes chr2R 24689785 intergenic not near genes chr2R 24689841 intergenic not near genes chr2R_5_24685001 chr2R_24685001 RAL-765 659 chr2R 24727883 24727915 chr2R 24735390 24735423 mdg1 22 7506 2.5 6.5 4.5 4.0 7540 chr2R 24727883 intron Mid1 - chr2R 24731653 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_22_24730001 chr2R_24730001 RAL-765 660 chr2R 24763609 24763642 chr2R 24765585 24765618 G2 11 1976 7.0 5.5 6.2 1.5 2009 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-765 661 chr2R 24859846 24859868 chr2R 24859931 24859954 8 86 0.0 3.0 1.5 3.2 108 chr2R 24859846 5` UTR CR44829 + chr2R 24859900 5` UTR CR44829 + chr2R 24859954 5` UTR CR44829 + chr2R_8_24855001 chr2R_24855001 RAL-765 662 chr2R 24884051 24884077 chr2R 24884133 24884159 15 82 2.5 1.5 2.0 5.0 108 chr2R 24884051 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884159 intron NKAIN + chr2R_15_24880001 chr2R_24880001 RAL-765 663 chr2R 24897922 24897953 chr2R 24898003 24898034 9 81 4.0 5.0 4.5 1.6 112 chr2R 24897922 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24897978 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24898034 intron,3` UTR NaCP60E +,Tpc2 - chr2R_9_24895001 chr2R_24895001 RAL-765 664 chr2R 25004899 25004924 chr2R 25004977 25005002 10 78 2.0 1.5 1.8 3.6 103 chr2R 25004899 intron zip - chr2R 25004950 intron zip - chr2R 25005002 intron zip - chr2R_10_25000001 chr2R_25000001 RAL-765 665 chr2R 25014543 25014576 chr2R 25014619 25014640 9 72 2.0 2.0 2.0 3.0 97 chr2R 25014543 intron uzip + chr2R 25014592 intron uzip + chr2R 25014640 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-765 666 chr2R 25018350 25018372 chr2R 25018447 25018473 10 100 3.0 5.0 4.0 2.0 123 chr2R 25018350 intron uzip + chr2R 25018412 intron uzip + chr2R 25018473 intron uzip + chr2R_10_25015001 chr2R_25015001 RAL-765 667 chr2R 25022649 25022672 chr2R 25022733 25022755 5 84 1.0 3.5 2.2 1.6 106 chr2R 25022649 intron uzip + chr2R 25022702 intron uzip + chr2R 25022755 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-765 668 chr2R 25080306 25080335 chr2R 25080676 25080704 9 370 1.0 1.5 1.2 4.1 398 chr2R 25080306 intron gol - chr2R 25080505 intron gol - chr2R 25080704 intron gol - chr2R_9_25080001 chr2R_25080001 RAL-765 669 chr2R 25081617 25081635 chr2R 25082712 25082725 10 1095 2.0 3.0 2.5 2.9 1108 chr2R 25081617 intron gol - chr2R 25082171 intron gol - chr2R 25082725 intron gol - chr2R_10_25080001 chr2R_25080001 RAL-765 670 chr2R 25101274 25101307 chr2R 25101376 25101409 11 101 4.0 2.0 3.0 2.8 135 chr2R 25101274 intron lov - chr2R 25101342 intron lov - chr2R 25101409 intron lov - chr2R_11_25100001 chr2R_25100001 RAL-765 671 chr2R 25122963 25122992 chr2R 25123042 25123071 8 79 1.0 1.5 1.2 3.6 108 chr2R 25122963 intron lov - chr2R 25123017 intron lov - chr2R 25123071 intron lov - chr2R_8_25120001 chr2R_25120001 RAL-765 672 chr2R 25176894 25176924 chr2R 25177161 25177190 5 267 0.5 1.0 0.8 2.8 296 chr2R 25176894 intergenic Peb - chr2R 25177042 intergenic Peb - chr2R 25177190 intergenic Peb - chr2R_5_25175001 chr2R_25175001 RAL-765 673 chr2R 25180765 25180782 chr2R 25180842 25180859 4 77 0.0 0.5 0.2 3.3 94 chr2R 25180765 intergenic not near genes chr2R 25180812 intergenic not near genes chr2R 25180859 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-765 674 chr2R 25181102 25181135 chr2R 25181198 25181229 6 96 0.5 1.5 1.0 3.0 127 chr2R 25181102 intergenic not near genes chr2R 25181166 intergenic not near genes chr2R 25181229 intergenic not near genes chr2R_6_25180001 chr2R_25180001 RAL-765 675 chr2R 25193340 25193349 chr2R 25193482 25193491 4 142 1.5 0.0 0.8 2.2 151 chr2R 25193340 intron CG9380 - chr2R 25193416 intron CG9380 - chr2R 25193491 intron CG9380 - chr2R_4_25190001 chr2R_25190001 RAL-765 676 chr3L 110209 110244 chr3L 119376 119411 roo 8 9167 0.0 1.5 0.8 4.4 9202 chr3L 110209 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_8_110001 chr3L_110001 RAL-765 677 chr3L 217656 217692 chr3L 217752 217772 15 94 5.5 5.5 5.5 2.3 116 chr3L 217656 exon Kaz1-ORFB + chr3L 217714 exon Kaz1-ORFB + chr3L 217772 exon Kaz1-ORFB + chr3L_15_215001 chr3L_215001 RAL-765 678 chr3L 402688 402718 chr3L 409741 409771 297 7 7051 7.0 5.0 6.0 1.0 7083 chr3L 402688 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-765 679 chr3L 445578 445584 chr3L 445654 445660 4 76 1.5 3.5 2.5 1.1 82 chr3L 445578 intron klar - chr3L 445619 intron klar - chr3L 445660 intron klar - chr3L_4_445001 chr3L_445001 RAL-765 680 chr3L 478048 478077 chr3L 478126 478158 5 74 0.5 3.5 2.0 1.7 110 chr3L 478048 intron klar - chr3L 478103 intron klar - chr3L 478158 intron klar - chr3L_5_475001 chr3L_475001 RAL-765 681 chr3L 501681 501713 chr3L 501758 501790 8 77 1.5 0.5 1.0 4.0 109 chr3L 501681 intron klar - chr3L 501736 intron klar - chr3L 501790 intron klar - chr3L_8_500001 chr3L_500001 RAL-765 682 chr3L 642472 642500 chr3L 642563 642591 4 91 0.5 1.5 1.0 2.0 119 chr3L 642472 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642591 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-765 683 chr3L 651386 651421 chr3L 651474 651509 8 88 1.5 3.5 2.5 2.3 123 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651509 intergenic CG3402 -,Gale + chr3L_8_650001 chr3L_650001 RAL-765 684 chr3L 717907 717914 chr3L 717996 718003 4 89 0.0 4.5 2.2 1.2 96 chr3L 717907 intergenic not near genes chr3L 717955 intergenic not near genes chr3L 718003 intergenic not near genes chr3L_4_715001 chr3L_715001 RAL-765 685 chr3L 857998 858025 chr3L 866478 866506 Tirant 13 8480 4.5 2.5 3.5 2.9 8508 chr3L 857998 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866506 5` UTR CG12502 + chr3L_13_860001 chr3L_860001 RAL-765 686 chr3L 899998 900013 chr3L 900082 900097 6 84 0.0 3.0 1.5 2.4 99 chr3L 899998 intergenic not near genes chr3L 900048 intergenic not near genes chr3L 900097 intergenic not near genes chr3L_6_900001 chr3L_900001 RAL-765 687 chr3L 925178 925207 chr3L 932604 932633 mdg1 9 7426 1.5 1.5 1.5 3.6 7455 chr3L 925178 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-765 688 chr3L 933910 933942 chr3L 934013 934045 14 102 0.5 3.5 2.0 4.7 135 chr3L 933910 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_14_930001 chr3L_930001 RAL-765 689 chr3L 939770 939800 chr3L 940891 940921 jockey 11 1121 5.0 5.0 5.0 1.8 1151 chr3L 939770 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-765 690 chr3L 961018 961040 chr3L 961111 961133 4 93 1.0 1.5 1.2 1.8 115 chr3L 961018 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961133 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-765 691 chr3L 1008508 1008533 chr3L 1008584 1008609 6 76 1.5 5.5 3.5 1.3 101 chr3L 1008508 intron trio - chr3L 1008558 intron trio - chr3L 1008609 intron trio - chr3L_6_1005001 chr3L_1005001 RAL-765 692 chr3L 1021604 1021625 chr3L 1021680 1021691 8 70 2.0 4.0 3.0 2.0 87 chr3L 1021604 intron trio - chr3L 1021648 intron trio - chr3L 1021691 intron trio - chr3L_8_1020001 chr3L_1020001 RAL-765 693 chr3L 1040548 1040577 chr3L 1040632 1040661 16 84 4.5 1.5 3.0 4.0 113 chr3L 1040548 intron bab1 - chr3L 1040604 intron bab1 - chr3L 1040661 intron bab1 - chr3L_16_1040001 chr3L_1040001 RAL-765 694 chr3L 1047355 1047385 chr3L 1055167 1055193 412 6 7810 1.5 2.5 2.0 2.0 7838 chr3L 1047355 intron bab1 - chr3L 1051274 intron bab1 - chr3L 1055193 intron bab1 - chr3L_6_1050001 chr3L_1050001 RAL-765 695 chr3L 1095029 1095042 chr3L 1095108 1095123 4 80 1.0 3.0 2.0 1.3 94 chr3L 1095029 intron bab1 - chr3L 1095076 intron bab1 - chr3L 1095123 intron bab1 - chr3L_4_1095001 chr3L_1095001 RAL-765 696 chr3L 1143944 1143956 chr3L 1144041 1144053 7 97 0.0 5.5 2.8 1.8 109 chr3L 1143944 intron bab2 - chr3L 1143998 intron bab2 - chr3L 1144053 intron bab2 - chr3L_7_1140001 chr3L_1140001 RAL-765 697 chr3L 1154129 1154135 chr3L 1163279 1163285 roo 4 9150 4.5 1.0 2.8 1.1 9156 chr3L 1154129 intron bab2 - chr3L 1158707 intron bab2 - chr3L 1163285 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-765 698 chr3L 1219599 1219622 chr3L 1227327 1227355 412 7 7732 3.0 4.5 3.8 1.5 7756 chr3L 1219599 intron mwh + chr3L 1223477 intron mwh + chr3L 1227355 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-765 699 chr3L 1311535 1311549 chr3L 1311618 1311632 5 81 10.5 5.5 8.0 0.6 97 chr3L 1311535 exon CG2469 + chr3L 1311584 exon CG2469 + chr3L 1311632 exon CG2469 + chr3L_5_1310001 chr3L_1310001 RAL-765 700 chr3L 1324650 1324658 chr3L 1324728 1324736 6 77 2.0 6.0 4.0 1.2 86 chr3L 1324650 intron Myo61F + chr3L 1324693 intron Myo61F + chr3L 1324736 intron Myo61F + chr3L_6_1320001 chr3L_1320001 RAL-765 701 chr3L 1415774 1415793 chr3L 1415856 1415872 9 82 7.0 4.5 5.8 1.3 98 chr3L 1415774 intron Ptp61F - chr3L 1415823 intron Ptp61F - chr3L 1415872 intron Ptp61F - chr3L_9_1415001 chr3L_1415001 RAL-765 702 chr3L 1477394 1477414 chr3L 1477484 1477504 8 90 2.5 0.0 1.2 3.6 110 chr3L 1477394 intron stet - chr3L 1477449 intron stet - chr3L 1477504 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-765 703 chr3L 1505998 1506032 chr3L 1513595 1513629 17.6 12 7596 2.0 3.0 2.5 3.4 7631 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_12_1505001 chr3L_1505001 RAL-765 704 chr3L 1552625 1552659 chr3L 1552739 1552773 15 114 4.0 4.5 4.2 2.9 148 chr3L 1552625 exon Cct1 + chr3L 1552699 3` UTR Cct1 + chr3L 1552773 3` UTR Cct1 + chr3L_15_1550001 chr3L_1550001 RAL-765 705 chr3L 1569525 1569531 chr3L 1569601 1569607 5 76 3.0 6.5 4.8 0.9 82 chr3L 1569525 5` UTR CG12004 + chr3L 1569566 intron CG12004 + chr3L 1569607 intron CG12004 + chr3L_5_1565001 chr3L_1565001 RAL-765 706 chr3L 1639215 1639237 chr3L 1639396 1639418 8 180 1.0 4.5 2.8 2.1 203 chr3L 1639215 5` UTR metl - chr3L 1639316 intergenic metl -,Bgb + chr3L 1639418 intergenic metl -,Bgb + chr3L_8_1635001 chr3L_1635001 RAL-765 707 chr3L 1658621 1658659 chr3L 1658697 1658735 14 75 4.0 3.0 3.5 3.1 114 chr3L 1658621 intron CG7971 - chr3L 1658678 intron CG7971 - chr3L 1658735 intron CG7971 - chr3L_14_1655001 chr3L_1655001 RAL-765 708 chr3L 1728517 1728552 chr3L 1728601 1728637 10 83 2.5 1.0 1.8 3.6 120 chr3L 1728517 intron drpr - chr3L 1728577 intron drpr - chr3L 1728637 intron drpr - chr3L_10_1725001 chr3L_1725001 RAL-765 709 chr3L 1848645 1848671 chr3L 1848723 1848749 7 78 4.5 1.5 3.0 1.8 104 chr3L 1848645 intergenic not near genes chr3L 1848697 intergenic not near genes chr3L 1848749 intergenic not near genes chr3L_7_1845001 chr3L_1845001 RAL-765 710 chr3L 1923009 1923040 chr3L 1923099 1923129 9 90 1.5 5.5 3.5 2.0 120 chr3L 1923009 intron Dbx + chr3L 1923069 intron Dbx + chr3L 1923129 intron Dbx + chr3L_9_1920001 chr3L_1920001 RAL-765 711 chr3L 1925075 1925111 chr3L 1925162 1925198 9 86 1.5 2.0 1.8 3.2 123 chr3L 1925075 intron Dbx + chr3L 1925136 intron Dbx + chr3L 1925198 intron Dbx + chr3L_9_1925001 chr3L_1925001 RAL-765 712 chr3L 2016088 2016101 chr3L 2016224 2016237 4 136 1.0 0.0 0.5 2.7 149 chr3L 2016088 intergenic not near genes chr3L 2016162 intergenic not near genes chr3L 2016237 intergenic not near genes chr3L_4_2015001 chr3L_2015001 RAL-765 713 chr3L 2108252 2108282 chr3L 2113456 2113486 copia 5 5204 1.0 0.0 0.5 3.3 5234 chr3L 2108252 intron sls - chr3L 2110869 intron sls - chr3L 2113486 intron sls - chr3L_5_2110001 chr3L_2110001 RAL-765 714 chr3L 2139210 2139233 chr3L 2139291 2139314 8 81 4.0 8.0 6.0 1.1 104 chr3L 2139210 intron zormin - chr3L 2139262 intron zormin - chr3L 2139314 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-765 715 chr3L 2187605 2187638 chr3L 2187688 2187721 12 83 1.5 2.5 2.0 4.0 116 chr3L 2187605 exon CG13810 + chr3L 2187663 3` UTR CG13810 + chr3L 2187721 intergenic CG13810 + chr3L_12_2185001 chr3L_2185001 RAL-765 716 chr3L 2308005 2308031 chr3L 2308111 2308136 5 106 2.5 3.0 2.8 1.3 131 chr3L 2308005 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308136 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-765 717 chr3L 2366099 2366123 chr3L 2366184 2366205 4 84 0.5 3.5 2.0 1.3 106 chr3L 2366099 intergenic not near genes chr3L 2366152 intergenic not near genes chr3L 2366205 intergenic not near genes chr3L_4_2365001 chr3L_2365001 RAL-765 718 chr3L 2413309 2413343 chr3L 2413478 2413512 6 168 1.5 1.0 1.2 2.7 203 chr3L 2413309 intron CG45186 + chr3L 2413410 intron CG45186 + chr3L 2413512 intron CG45186 + chr3L_6_2410001 chr3L_2410001 RAL-765 719 chr3L 2432278 2432305 chr3L 2432360 2432386 6 82 2.0 2.5 2.2 1.9 108 chr3L 2432278 intron CG45186 + chr3L 2432332 intron CG45186 + chr3L 2432386 intron CG45186 + chr3L_6_2430001 chr3L_2430001 RAL-765 720 chr3L 2447505 2447530 chr3L 2456661 2456686 roo 4 9155 4.0 5.0 4.5 0.7 9181 chr3L 2447505 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456686 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-765 721 chr3L 2479471 2479486 chr3L 2479564 2479579 4 92 0.0 4.0 2.0 1.3 108 chr3L 2479471 intron CG45186 + chr3L 2479525 intron CG45186 + chr3L 2479579 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-765 722 chr3L 2492316 2492329 chr3L 2492407 2492420 6 91 0.5 3.0 1.8 2.1 104 chr3L 2492316 intron,3` UTR CG45186 +,CG1146 + chr3L 2492368 intron,3` UTR CG45186 +,CG1146 + chr3L 2492420 intron,3` UTR CG45186 +,CG1146 + chr3L_6_2490001 chr3L_2490001 RAL-765 723 chr3L 2533647 2533679 chr3L 2533729 2533761 17 80 4.0 4.5 4.2 3.3 114 chr3L 2533647 intron Spn - chr3L 2533704 intron Spn - chr3L 2533761 intron Spn - chr3L_17_2530001 chr3L_2530001 RAL-765 724 chr3L 2657098 2657130 chr3L 2657179 2657211 8 80 5.0 1.5 3.2 1.9 113 chr3L 2657098 3` UTR Fife - chr3L 2657154 3` UTR Fife - chr3L 2657211 3` UTR Fife - chr3L_8_2655001 chr3L_2655001 RAL-765 725 chr3L 2731527 2731549 chr3L 2731602 2731630 5 80 4.0 1.0 2.5 1.4 103 chr3L 2731527 intron Mrtf - chr3L 2731578 intron Mrtf - chr3L 2731630 intron Mrtf - chr3L_5_2730001 chr3L_2730001 RAL-765 726 chr3L 2747393 2747394 chr3L 22908066 22908067 5 20160673 11.5 12.5 12.0 0.4 20160674 chr3L 2747393 intron Mrtf - chr3L 12827730 intron CG10960 - chr3L 22908067 intergenic not near genes chr3L_5_12825001 chr3L_12825001 RAL-765 727 chr3L 2762892 2762914 chr3L 2763023 2763044 6 130 15.0 9.0 12.0 0.5 152 chr3L 2762892 intron Mrtf - chr3L 2762968 intron Mrtf - chr3L 2763044 intron Mrtf - chr3L_6_2760001 chr3L_2760001 RAL-765 728 chr3L 2795743 2795756 chr3L 2795866 2795878 4 123 0.0 5.5 2.8 1.1 135 chr3L 2795743 intron CG43444 - chr3L 2795810 intron CG43444 - chr3L 2795878 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-765 729 chr3L 2854482 2854503 chr3L 2854560 2854580 9 77 2.0 0.5 1.2 4.1 98 chr3L 2854482 intron CG43444 - chr3L 2854531 intron CG43444 - chr3L 2854580 intron CG43444 - chr3L_9_2850001 chr3L_2850001 RAL-765 730 chr3L 2882122 2882139 chr3L 2882198 2882215 6 76 1.5 1.0 1.2 2.7 93 chr3L 2882122 intergenic not near genes chr3L 2882168 intergenic not near genes chr3L 2882215 intergenic not near genes chr3L_6_2880001 chr3L_2880001 RAL-765 731 chr3L 3061288 3061314 chr3L 3069871 3069897 Tirant 6 8578 1.5 1.5 1.5 2.4 8609 chr3L 3061288 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069897 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-765 732 chr3L 3102832 3102848 chr3L 3102905 3102934 6 82 1.5 4.5 3.0 1.5 102 chr3L 3102832 intron Cht7 - chr3L 3102883 intron Cht7 - chr3L 3102934 intron Cht7 - chr3L_6_3100001 chr3L_3100001 RAL-765 733 chr3L 3475074 3475107 chr3L 3475518 3475551 jockey 4 444 2.0 2.5 2.2 1.2 477 chr3L 3475074 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475551 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-765 734 chr3L 3484435 3484446 chr3L 3484512 3484523 4 77 2.5 5.0 3.8 0.8 88 chr3L 3484435 intron,intron CG42324 +,CG43074 - chr3L 3484479 intron,exon CG42324 +,CG43074 - chr3L 3484523 intron,intron CG42324 +,CG43074 - chr3L_4_3480001 chr3L_3480001 RAL-765 735 chr3L 3544390 3544417 chr3L 3544499 3544527 7 110 0.0 1.5 0.8 3.9 137 chr3L 3544390 intron Eip63E + chr3L 3544458 intron Eip63E + chr3L 3544527 intron Eip63E + chr3L_7_3540001 chr3L_3540001 RAL-765 736 chr3L 3601301 3601320 chr3L 3606612 3606628 copia 4 5310 2.5 2.0 2.2 1.2 5327 chr3L 3601301 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606628 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-765 737 chr3L 3627236 3627261 chr3L 3627341 3627366 7 104 1.0 2.0 1.5 2.8 130 chr3L 3627236 intron dar1 + chr3L 3627301 intron dar1 + chr3L 3627366 intron dar1 + chr3L_7_3625001 chr3L_3625001 RAL-765 738 chr3L 3768965 3768976 chr3L 3769065 3769077 4 100 3.0 0.5 1.8 1.4 112 chr3L 3768965 intron CG32264 - chr3L 3769021 intron CG32264 - chr3L 3769077 exon CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-765 739 chr3L 3797242 3797258 chr3L 3797325 3797341 5 83 1.0 0.5 0.8 2.8 99 chr3L 3797242 intron CG32264 - chr3L 3797292 intron CG32264 - chr3L 3797341 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-765 740 chr3L 3802949 3802977 chr3L 3803032 3803060 10 82 1.0 3.0 2.0 3.3 111 chr3L 3802949 intron CG32264 - chr3L 3803004 intron CG32264 - chr3L 3803060 intron CG32264 - chr3L_10_3800001 chr3L_3800001 RAL-765 741 chr3L 4098306 4098333 chr3L 4098551 4098578 6 245 2.5 2.5 2.5 1.7 272 chr3L 4098306 intron CG14995 - chr3L 4098442 intron CG14995 - chr3L 4098578 intron CG14995 - chr3L_6_4095001 chr3L_4095001 RAL-765 742 chr3L 4328745 4328758 chr3L 4336243 4336256 412 4 7498 0.5 1.5 1.0 2.0 7511 chr3L 4328745 intron Cip4 - chr3L 4332500 intron Cip4 - chr3L 4336256 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-765 743 chr3L 4676722 4676753 chr3L 4677414 4677445 8 692 2.5 3.0 2.8 2.1 723 chr3L 4676722 intron axo - chr3L 4677084 intron axo - chr3L 4677445 intron axo - chr3L_8_4675001 chr3L_4675001 RAL-765 744 chr3L 4784957 4784993 chr3L 4785166 4785202 5 209 0.0 0.0 0.0 5.0 245 chr3L 4784957 intron RhoGEF64C + chr3L 4785080 intron RhoGEF64C + chr3L 4785202 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-765 745 chr3L 4837893 4837921 chr3L 4837972 4838000 10 78 2.0 1.5 1.8 3.6 107 chr3L 4837893 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838000 3` UTR CG13707 - chr3L_10_4835001 chr3L_4835001 RAL-765 746 chr3L 4840411 4840418 chr3L 4840502 4840527 4 104 0.5 2.5 1.5 1.6 116 chr3L 4840411 intergenic CG13707 - chr3L 4840469 intergenic CG13707 - chr3L 4840527 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-765 747 chr3L 4858313 4858335 chr3L 4858402 4858425 11 90 5.0 7.0 6.0 1.6 112 chr3L 4858313 intergenic not near genes chr3L 4858369 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_11_4855001 chr3L_4855001 RAL-765 748 chr3L 4901128 4901157 chr3L 4907318 4907347 diver 5 6190 2.0 1.0 1.5 2.0 6219 chr3L 4901128 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907347 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-765 749 chr3L 4988073 4988098 chr3L 4988156 4988181 4 83 1.5 1.5 1.5 1.6 108 chr3L 4988073 intron Con - chr3L 4988127 intron Con - chr3L 4988181 intron Con - chr3L_4_4985001 chr3L_4985001 RAL-765 750 chr3L 5034156 5034184 chr3L 5043308 5043336 roo 6 9152 1.0 1.5 1.2 2.7 9180 chr3L 5034156 intron Con - chr3L 5038746 intron Con - chr3L 5043336 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-765 751 chr3L 5045472 5045481 chr3L 5050253 5050262 Doc 4 4781 1.0 3.0 2.0 1.3 4790 chr3L 5045472 intron Con - chr3L 5047867 intron Con - chr3L 5050262 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-765 752 chr3L 5104483 5104510 chr3L 5124617 5124644 8 20134 1.0 0.0 0.5 5.3 20161 chr3L 5104483 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_8_5110001 chr3L_5110001 RAL-765 753 chr3L 5130928 5130958 chr3L 5131031 5131060 6 103 1.0 0.0 0.5 4.0 132 chr3L 5130928 intergenic not near genes chr3L 5130994 intergenic not near genes chr3L 5131060 intergenic CG15212 + chr3L_6_5130001 chr3L_5130001 RAL-765 754 chr3L 5388204 5388228 chr3L 5388528 5388551 6 324 1.5 2.5 2.0 2.0 347 chr3L 5388204 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388551 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-765 755 chr3L 5667628 5667641 chr3L 5667708 5667721 8 80 3.5 0.0 1.8 2.9 93 chr3L 5667628 intron sif + chr3L 5667674 intron sif + chr3L 5667721 intron sif + chr3L_8_5665001 chr3L_5665001 RAL-765 756 chr3L 5855571 5855572 chr3L 22908066 22908067 4 17052495 4.0 12.5 8.2 0.4 17052496 chr3L 5855571 intergenic not near genes chr3L 14381819 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_4_14380001 chr3L_14380001 RAL-765 757 chr3L 5926333 5926341 chr3L 5926523 5926531 BS 7 189 5.0 2.0 3.5 1.6 198 chr3L 5926333 intron Vap-33B + chr3L 5926432 intron Vap-33B + chr3L 5926531 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-765 758 chr3L 6036620 6036644 chr3L 6037008 6037034 8 389 2.0 2.5 2.2 2.5 414 chr3L 6036620 5` UTR CR43952 + chr3L 6036827 5` UTR CR43952 + chr3L 6037034 intergenic CG6462 +,CR43952 + chr3L_8_6035001 chr3L_6035001 RAL-765 759 chr3L 6049237 6049268 chr3L 6049440 6049469 8 202 15.0 17.0 16.0 0.5 232 chr3L 6049237 intergenic not near genes chr3L 6049353 intergenic not near genes chr3L 6049469 intergenic not near genes chr3L_8_6045001 chr3L_6045001 RAL-765 760 chr3L 6052654 6052668 chr3L 6052739 6052753 4 84 7.5 20.0 13.8 0.3 99 chr3L 6052654 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052753 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-765 761 chr3L 6159871 6159895 chr3L 6159961 6159985 7 90 1.5 1.5 1.5 2.8 114 chr3L 6159871 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6159985 intergenic not near genes chr3L_7_6155001 chr3L_6155001 RAL-765 762 chr3L 6220916 6220948 chr3L 6230068 6230099 roo 11 9151 3.5 3.5 3.5 2.4 9183 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_11_6225001 chr3L_6225001 RAL-765 763 chr3L 6335008 6335043 chr3L 6335479 6335514 297 4 471 1.5 3.0 2.2 1.2 506 chr3L 6335008 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335514 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-765 764 chr3L 6372450 6372458 chr3L 6372601 6372609 4 151 2.5 2.0 2.2 1.2 159 chr3L 6372450 intergenic not near genes chr3L 6372530 intergenic not near genes chr3L 6372609 intergenic not near genes chr3L_4_6370001 chr3L_6370001 RAL-765 765 chr3L 6582782 6582798 chr3L 6582881 6582897 6 99 1.0 1.5 1.2 2.7 115 chr3L 6582782 intron,intron CG18769 +,jv - chr3L 6582840 intron,intron CG18769 +,jv - chr3L 6582897 intron,intron CG18769 +,jv - chr3L_6_6580001 chr3L_6580001 RAL-765 766 chr3L 6855934 6855953 chr3L 6860718 6860736 Doc 7 4784 1.5 3.0 2.2 2.2 4802 chr3L 6855934 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860736 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-765 767 chr3L 6887518 6887538 chr3L 6895010 6895030 roo 6 7492 2.0 2.0 2.0 2.0 7512 chr3L 6887518 intergenic not near genes chr3L 6891274 intergenic not near genes chr3L 6895030 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-765 768 chr3L 6930222 6930243 chr3L 6930304 6930325 4 80 1.5 2.5 2.0 1.3 103 chr3L 6930222 intergenic not near genes chr3L 6930274 intergenic not near genes chr3L 6930325 intergenic not near genes chr3L_4_6930001 chr3L_6930001 RAL-765 769 chr3L 7033174 7033184 chr3L 7033254 7033264 4 80 3.5 4.0 3.8 0.8 90 chr3L 7033174 intron Mp + chr3L 7033219 intron Mp + chr3L 7033264 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-765 770 chr3L 7033185 7033205 chr3L 7033251 7033285 8 76 0.5 4.0 2.2 2.5 100 chr3L 7033185 intron Mp + chr3L 7033235 intron Mp + chr3L 7033285 intron Mp + chr3L_8_7030001 chr3L_7030001 RAL-765 771 chr3L 7055407 7055429 chr3L 7055761 7055783 6 354 2.5 0.5 1.5 2.4 376 chr3L 7055407 intergenic not near genes chr3L 7055595 intergenic not near genes chr3L 7055783 intergenic not near genes chr3L_6_7055001 chr3L_7055001 RAL-765 772 chr3L 7090921 7090946 chr3L 7091005 7091030 8 84 0.0 0.5 0.2 6.7 109 chr3L 7090921 intergenic not near genes chr3L 7090976 intergenic not near genes chr3L 7091030 intergenic not near genes chr3L_8_7090001 chr3L_7090001 RAL-765 773 chr3L 7244932 7244965 chr3L 7245024 7245056 9 87 3.0 3.0 3.0 2.2 124 chr3L 7244932 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245056 exon mei-P22 + chr3L_9_7240001 chr3L_7240001 RAL-765 774 chr3L 7285450 7285477 chr3L 7285528 7285555 14 78 1.0 1.0 1.0 7.0 105 chr3L 7285450 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285555 intron unc-13-4A - chr3L_14_7285001 chr3L_7285001 RAL-765 775 chr3L 7303997 7304030 chr3L 7304486 7304519 4 482 0.0 0.0 0.0 4.0 522 chr3L 7303997 intron unc-13-4A - chr3L 7304258 intron unc-13-4A - chr3L 7304519 intron unc-13-4A - chr3L_4_7300001 chr3L_7300001 RAL-765 776 chr3L 7358295 7358324 chr3L 7359579 7359603 12 1283 18.5 22.5 20.5 0.6 1308 chr3L 7358295 exon pst - chr3L 7358949 exon pst - chr3L 7359603 intron pst - chr3L_12_7355001 chr3L_7355001 RAL-765 777 chr3L 7377320 7377327 chr3L 7380425 7380432 297 4 3105 3.5 4.5 4.0 0.8 3112 chr3L 7377320 intron SMSr - chr3L 7378876 intron SMSr - chr3L 7380432 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-765 778 chr3L 7403627 7403646 chr3L 7403700 7403723 7 76 0.5 2.5 1.5 2.8 96 chr3L 7403627 intron CG8560 - chr3L 7403675 intron CG8560 - chr3L 7403723 intron CG8560 - chr3L_7_7400001 chr3L_7400001 RAL-765 779 chr3L 7444022 7444048 chr3L 7444120 7444147 4 99 0.5 0.0 0.2 3.3 125 chr3L 7444022 intron CG42458 + chr3L 7444084 intron CG42458 + chr3L 7444147 intron CG42458 + chr3L_4_7440001 chr3L_7440001 RAL-765 780 chr3L 7498760 7498790 chr3L 7503537 7503568 F-element 4 4777 1.5 0.5 1.0 2.0 4808 chr3L 7498760 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503568 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-765 781 chr3L 7591153 7591175 chr3L 7591244 7591266 6 90 3.0 3.0 3.0 1.5 113 chr3L 7591153 intergenic CG7716 - chr3L 7591210 intergenic CG7716 - chr3L 7591266 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-765 782 chr3L 7752158 7752179 chr3L 7752265 7752285 5 107 4.0 3.5 3.8 1.0 127 chr3L 7752158 intron CG32373 + chr3L 7752222 intron CG32373 + chr3L 7752285 intron CG32373 + chr3L_5_7750001 chr3L_7750001 RAL-765 783 chr3L 7793719 7793745 chr3L 7800762 7800797 297 6 7050 2.0 0.5 1.2 2.7 7078 chr3L 7793719 intron CG32369 - chr3L 7797258 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-765 784 chr3L 7886515 7886547 chr3L 7889031 7889058 Stalker4 5 2516 0.5 0.5 0.5 3.3 2543 chr3L 7886515 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889058 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-765 785 chr3L 7902423 7902447 chr3L 7902506 7902530 5 82 3.5 0.0 1.8 1.8 107 chr3L 7902423 intron pbl - chr3L 7902476 intron pbl - chr3L 7902530 intron pbl - chr3L_5_7900001 chr3L_7900001 RAL-765 786 chr3L 7916837 7916861 chr3L 7926008 7926032 roo 8 9171 0.0 3.0 1.5 3.2 9195 chr3L 7916837 3` UTR syd - chr3L 7921434 intron syd - chr3L 7926032 3` UTR syd - chr3L_8_7920001 chr3L_7920001 RAL-765 787 chr3L 7985361 7985390 chr3L 7987689 7987717 NOF 7 2328 2.0 1.5 1.8 2.5 2356 chr3L 7985361 intron nmo + chr3L 7986539 intron nmo + chr3L 7987717 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-765 788 chr3L 8046297 8046319 chr3L 8046378 8046399 6 81 1.0 3.0 2.0 2.0 102 chr3L 8046297 intron nmo + chr3L 8046348 intron nmo + chr3L 8046399 intron nmo + chr3L_6_8045001 chr3L_8045001 RAL-765 789 chr3L 8081282 8081301 chr3L 8081385 8081404 5 103 1.5 0.0 0.8 2.8 122 chr3L 8081282 intron Ect4 + chr3L 8081343 intron Ect4 + chr3L 8081404 intron Ect4 + chr3L_5_8080001 chr3L_8080001 RAL-765 790 chr3L 8164867 8164902 chr3L 8165058 8165093 7 191 0.5 1.5 1.0 3.5 226 chr3L 8164867 intron CG13675 - chr3L 8164980 intron CG13675 - chr3L 8165093 intron CG13675 - chr3L_7_8160001 chr3L_8160001 RAL-765 791 chr3L 8295792 8295828 chr3L 8295950 8295985 8 158 3.0 2.0 2.5 2.3 193 chr3L 8295792 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295985 intergenic not near genes chr3L_8_8295001 chr3L_8295001 RAL-765 792 chr3L 8491644 8491674 chr3L 8491726 8491756 5 82 4.0 1.5 2.8 1.3 112 chr3L 8491644 intron CG43163 - chr3L 8491700 intron CG43163 - chr3L 8491756 intron CG43163 - chr3L_5_8490001 chr3L_8490001 RAL-765 793 chr3L 8543618 8543642 chr3L 8543703 8543727 9 82 1.5 5.0 3.2 2.1 109 chr3L 8543618 intergenic not near genes chr3L 8543672 intergenic not near genes chr3L 8543727 intergenic not near genes chr3L_9_8540001 chr3L_8540001 RAL-765 794 chr3L 8643575 8643604 chr3L 8643651 8643680 8 76 2.0 3.0 2.5 2.3 105 chr3L 8643575 3` UTR Cpr66D + chr3L 8643628 intergenic Cpr66D + chr3L 8643680 intergenic Cpr66D + chr3L_8_8640001 chr3L_8640001 RAL-765 795 chr3L 8791275 8791291 chr3L 8796695 8796711 I-element 4 5420 10.0 0.0 5.0 0.7 5436 chr3L 8791275 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796711 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-765 796 chr3L 9003946 9003978 chr3L 9004030 9004063 5 84 3.5 1.0 2.2 1.6 117 chr3L 9003946 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-765 797 chr3L 9053102 9053134 chr3L 9053183 9053214 17 80 1.5 2.5 2.0 5.7 112 chr3L 9053102 intron Argk - chr3L 9053158 intron Argk - chr3L 9053214 intron Argk - chr3L_17_9050001 chr3L_9050001 RAL-765 798 chr3L 9076927 9076954 chr3L 9084485 9084512 412 8 7560 3.0 3.0 3.0 2.0 7585 chr3L 9076927 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084512 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-765 799 chr3L 9086439 9086472 chr3L 9086522 9086555 8 80 1.5 3.5 2.5 2.3 116 chr3L 9086439 exon Tequila + chr3L 9086497 exon Tequila + chr3L 9086555 exon Tequila + chr3L_8_9085001 chr3L_9085001 RAL-765 800 chr3L 9128200 9128220 chr3L 9128285 9128297 7 84 5.5 4.0 4.8 1.2 97 chr3L 9128200 intron bol - chr3L 9128248 intron bol - chr3L 9128297 intron bol - chr3L_7_9125001 chr3L_9125001 RAL-765 801 chr3L 9130566 9130582 chr3L 9134325 9134343 412 4 3760 1.5 3.5 2.5 1.1 3777 chr3L 9130566 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-765 802 chr3L 9164705 9164728 chr3L 9166172 9166195 hobo 4 1466 2.0 1.0 1.5 1.6 1490 chr3L 9164705 intron Rdl - chr3L 9165450 intron Rdl - chr3L 9166195 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-765 803 chr3L 9191874 9191907 chr3L 9191963 9191996 15 88 4.0 1.5 2.8 3.9 122 chr3L 9191874 intergenic not near genes chr3L 9191935 intergenic not near genes chr3L 9191996 intergenic not near genes chr3L_15_9190001 chr3L_9190001 RAL-765 804 chr3L 9195838 9195856 chr3L 9195919 9195937 5 81 0.0 5.0 2.5 1.4 99 chr3L 9195838 intergenic not near genes chr3L 9195888 intergenic not near genes chr3L 9195937 intergenic not near genes chr3L_5_9195001 chr3L_9195001 RAL-765 805 chr3L 9219242 9219270 chr3L 9219914 9219942 jockey 7 672 2.5 2.0 2.2 2.2 700 chr3L 9219242 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219942 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-765 806 chr3L 9270615 9270638 chr3L 9278370 9278393 roo 4 7755 3.0 3.0 3.0 1.0 7778 chr3L 9270615 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278393 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-765 807 chr3L 9294038 9294049 chr3L 9299210 9299221 4 5172 16.5 8.0 12.2 0.3 5183 chr3L 9294038 intergenic not near genes chr3L 9296630 intergenic not near genes chr3L 9299221 intergenic not near genes chr3L_4_9295001 chr3L_9295001 RAL-765 808 chr3L 9443507 9443535 chr3L 9445298 9445326 S-element 8 1791 0.5 2.0 1.2 3.6 1819 chr3L 9443507 intron CG33926 + chr3L 9444416 intron CG33926 + chr3L 9445326 intron CG33926 + chr3L_8_9440001 chr3L_9440001 RAL-765 809 chr3L 9501701 9501731 chr3L 9502187 9502217 roo 6 486 1.0 2.0 1.5 2.4 516 chr3L 9501701 intron path - chr3L 9501959 intron path - chr3L 9502217 intron path - chr3L_6_9500001 chr3L_9500001 RAL-765 810 chr3L 9502614 9502640 chr3L 9502694 9502720 6 80 1.5 0.5 1.0 3.0 106 chr3L 9502614 intron path - chr3L 9502667 intron path - chr3L 9502720 intron path - chr3L_6_9500001 chr3L_9500001 RAL-765 811 chr3L 9533754 9533782 chr3L 9541314 9541342 412 10 7558 3.0 1.5 2.2 3.1 7588 chr3L 9533754 intergenic not near genes chr3L 9537548 intergenic not near genes chr3L 9541342 intergenic not near genes chr3L_10_9535001 chr3L_9535001 RAL-765 812 chr3L 9575906 9575943 chr3L 9580985 9581023 jockey 5 5076 1.0 1.5 1.2 2.3 5117 chr3L 9575906 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-765 813 chr3L 9646474 9646479 chr3L 9646599 9646604 4 125 5.0 0.0 2.5 1.1 130 chr3L 9646474 intron,intron fry -,CG33696 + chr3L 9646539 intron,intron fry -,CG33696 + chr3L 9646604 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-765 814 chr3L 9699937 9699961 chr3L 9700024 9700048 6 87 2.5 4.0 3.2 1.4 111 chr3L 9699937 3` UTR UbcD4 + chr3L 9699992 3` UTR UbcD4 + chr3L 9700048 3` UTR UbcD4 + chr3L_6_9695001 chr3L_9695001 RAL-765 815 chr3L 9733357 9733390 chr3L 9733436 9733469 6 79 2.0 1.5 1.8 2.1 112 chr3L 9733357 intron CG6749 - chr3L 9733413 intron CG6749 - chr3L 9733469 intron CG6749 - chr3L_6_9730001 chr3L_9730001 RAL-765 816 chr3L 9831708 9831724 chr3L 9831789 9831805 4 81 0.0 3.5 1.8 1.4 97 chr3L 9831708 intron CG43897 + chr3L 9831756 intron CG43897 + chr3L 9831805 intron CG43897 + chr3L_4_9830001 chr3L_9830001 RAL-765 817 chr3L 9879378 9879392 chr3L 9879533 9879547 4 155 3.5 5.5 4.5 0.7 169 chr3L 9879378 5` UTR CG34382 + chr3L 9879462 5` UTR CG34382 + chr3L 9879547 exon CG34382 + chr3L_4_9875001 chr3L_9875001 RAL-765 818 chr3L 9879394 9879397 chr3L 9879530 9879552 4 150 3.0 5.0 4.0 0.8 158 chr3L 9879394 5` UTR CG34382 + chr3L 9879473 5` UTR CG34382 + chr3L 9879552 exon CG34382 + chr3L_4_9875001 chr3L_9875001 RAL-765 819 chr3L 9918881 9918913 chr3L 9918976 9919006 12 94 4.5 2.5 3.5 2.7 125 chr3L 9918881 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_12_9915001 chr3L_9915001 RAL-765 820 chr3L 10011604 10011623 chr3L 10011686 10011704 9 81 1.5 5.0 3.2 2.1 100 chr3L 10011604 intron dpr6 + chr3L 10011654 intron dpr6 + chr3L 10011704 intron dpr6 + chr3L_9_10010001 chr3L_10010001 RAL-765 821 chr3L 10027639 10027658 chr3L 10030530 10030550 6 2891 11.0 22.0 16.5 0.3 2911 chr3L 10027639 intron dpr6 + chr3L 10029094 intron dpr6 + chr3L 10030550 intron dpr6 + chr3L_6_10025001 chr3L_10025001 RAL-765 822 chr3L 10049569 10049574 chr3L 10049649 10049654 4 80 0.5 6.0 3.2 1.0 85 chr3L 10049569 intron dpr6 + chr3L 10049612 intron dpr6 + chr3L 10049654 intron dpr6 + chr3L_4_10045001 chr3L_10045001 RAL-765 823 chr3L 10219248 10219264 chr3L 10219344 10219361 4 97 3.0 1.0 2.0 1.3 113 chr3L 10219248 exon CG32055 - chr3L 10219304 exon CG32055 - chr3L 10219361 exon CG32055 - chr3L_4_10215001 chr3L_10215001 RAL-765 824 chr3L 10308756 10308766 chr3L 10308833 10308843 4 77 1.0 4.5 2.8 1.1 87 chr3L 10308756 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308843 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-765 825 chr3L 10310359 10310379 chr3L 10310455 10310476 6 97 1.5 4.5 3.0 1.5 117 chr3L 10310359 intergenic not near genes chr3L 10310418 intergenic not near genes chr3L 10310476 intergenic not near genes chr3L_6_10310001 chr3L_10310001 RAL-765 826 chr3L 10417590 10417600 chr3L 10417667 10417677 4 76 0.5 3.5 2.0 1.3 87 chr3L 10417590 intergenic not near genes chr3L 10417634 intergenic not near genes chr3L 10417677 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-765 827 chr3L 10455802 10455820 chr3L 10455927 10455945 5 125 3.0 1.5 2.2 1.6 143 chr3L 10455802 intergenic not near genes chr3L 10455874 intergenic not near genes chr3L 10455945 intergenic not near genes chr3L_5_10455001 chr3L_10455001 RAL-765 828 chr3L 10502045 10502063 chr3L 10502141 10502159 4 95 1.0 0.0 0.5 2.7 114 chr3L 10502045 intron A2bp1 + chr3L 10502102 intron A2bp1 + chr3L 10502159 intron A2bp1 + chr3L_4_10500001 chr3L_10500001 RAL-765 829 chr3L 10658077 10658212 chr3L 10658154 10658339 11 108 1.0 1.0 1.0 5.5 262 chr3L 10658077 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-765 830 chr3L 10956453 10956462 chr3L 10956568 10956579 4 116 1.5 3.0 2.2 1.2 126 chr3L 10956453 intergenic not near genes chr3L 10956516 intergenic not near genes chr3L 10956579 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-765 831 chr3L 10957004 10957033 chr3L 10957080 10957109 7 76 1.5 1.5 1.5 2.8 105 chr3L 10957004 intergenic not near genes chr3L 10957056 intergenic not near genes chr3L 10957109 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-765 832 chr3L 11047341 11047367 chr3L 11047425 11047451 5 83 0.5 1.0 0.8 2.8 110 chr3L 11047341 intron CG43693 - chr3L 11047396 intron CG43693 - chr3L 11047451 intron CG43693 - chr3L_5_11045001 chr3L_11045001 RAL-765 833 chr3L 11087062 11087088 chr3L 11088850 11088877 S-element 4 1788 0.0 2.0 1.0 2.0 1815 chr3L 11087062 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-765 834 chr3L 11094186 11094220 chr3L 11094267 11094301 12 80 3.0 5.0 4.0 2.4 115 chr3L 11094186 intron CG6279 - chr3L 11094244 exon CG6279 - chr3L 11094301 exon CG6279 - chr3L_12_11090001 chr3L_11090001 RAL-765 835 chr3L 11105295 11105328 chr3L 11107006 11107039 X-element 9 1708 4.0 4.5 4.2 1.7 1744 chr3L 11105295 intergenic not near genes chr3L 11106167 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_9_11105001 chr3L_11105001 RAL-765 836 chr3L 11188513 11188533 chr3L 11188685 11188700 5 171 1.5 0.0 0.8 2.8 187 chr3L 11188513 intron GlcAT-P - chr3L 11188606 intron GlcAT-P - chr3L 11188700 intron GlcAT-P - chr3L_5_11185001 chr3L_11185001 RAL-765 837 chr3L 11264465 11264499 chr3L 11271414 11271451 17.6 7 6950 0.0 2.0 1.0 3.5 6986 chr3L 11264465 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271451 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-765 838 chr3L 11277456 11277476 chr3L 11278451 11278470 Rt1a 9 994 0.5 4.0 2.2 2.8 1014 chr3L 11277456 intergenic not near genes chr3L 11277963 intergenic not near genes chr3L 11278470 intergenic not near genes chr3L_9_11275001 chr3L_11275001 RAL-765 839 chr3L 11285201 11285204 chr3L 11285351 11285355 4 150 3.0 0.0 1.5 1.6 154 chr3L 11285201 intergenic CR45404 + chr3L 11285278 intergenic CR45404 + chr3L 11285355 intergenic CR45404 + chr3L_4_11285001 chr3L_11285001 RAL-765 840 chr3L 11485081 11485109 chr3L 11485211 11485239 12 130 3.0 4.5 3.8 2.5 158 chr3L 11485081 intergenic not near genes chr3L 11485160 intergenic not near genes chr3L 11485239 intergenic not near genes chr3L_12_11485001 chr3L_11485001 RAL-765 841 chr3L 11563550 11563576 chr3L 11563632 11563658 8 83 2.5 3.5 3.0 2.0 108 chr3L 11563550 3` UTR CG7394 + chr3L 11563604 3` UTR CG7394 + chr3L 11563658 3` UTR CG7394 + chr3L_8_11560001 chr3L_11560001 RAL-765 842 chr3L 11564791 11564811 chr3L 11572416 11572436 412 9 7624 5.5 7.0 6.2 1.2 7645 chr3L 11564791 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_9_11565001 chr3L_11565001 RAL-765 843 chr3L 11673977 11673991 chr3L 11674053 11674067 5 76 1.0 0.0 0.5 3.3 90 chr3L 11673977 intron CG32085 - chr3L 11674022 intron CG32085 - chr3L 11674067 intron CG32085 - chr3L_5_11670001 chr3L_11670001 RAL-765 844 chr3L 11678097 11678123 chr3L 11678184 11678210 5 87 1.0 2.5 1.8 1.8 113 chr3L 11678097 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678210 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-765 845 chr3L 11723079 11723113 chr3L 11727874 11727908 Doc 8 4795 1.5 3.5 2.5 2.3 4829 chr3L 11723079 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-765 846 chr3L 11729677 11729704 chr3L 11729752 11729780 7 75 3.5 2.5 3.0 1.8 103 chr3L 11729677 exon CG32088 + chr3L 11729728 intron CG32088 + chr3L 11729780 exon CG32088 + chr3L_7_11725001 chr3L_11725001 RAL-765 847 chr3L 11744013 11744042 chr3L 11744121 11744149 11 108 4.5 0.0 2.2 3.4 136 chr3L 11744013 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-765 848 chr3L 11849338 11849356 chr3L 11849438 11849456 6 100 0.5 1.5 1.0 3.0 118 chr3L 11849338 intergenic not near genes chr3L 11849397 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_6_11845001 chr3L_11845001 RAL-765 849 chr3L 11864552 11864583 chr3L 11865847 11865878 pogo 10 1295 5.0 6.5 5.8 1.5 1326 chr3L 11864552 intron CG44837 - chr3L 11865215 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-765 850 chr3L 11872247 11872272 chr3L 11872341 11872369 7 95 0.5 3.0 1.8 2.5 122 chr3L 11872247 intron CG44837 - chr3L 11872308 intron CG44837 - chr3L 11872369 intron CG44837 - chr3L_7_11870001 chr3L_11870001 RAL-765 851 chr3L 11956614 11956646 chr3L 11956703 11956735 7 89 4.5 3.5 4.0 1.4 121 chr3L 11956614 exon CG7248 + chr3L 11956674 exon CG7248 + chr3L 11956735 3` UTR,3` UTR CG7248 +,CG11570 - chr3L_7_11955001 chr3L_11955001 RAL-765 852 chr3L 12013912 12013937 chr3L 12014003 12014028 7 91 1.0 1.5 1.2 3.2 116 chr3L 12013912 intron rols - chr3L 12013970 intron rols - chr3L 12014028 intron rols - chr3L_7_12010001 chr3L_12010001 RAL-765 853 chr3L 12052705 12052737 chr3L 12052793 12052826 9 89 3.0 1.0 2.0 3.0 121 chr3L 12052705 intron rols - chr3L 12052766 intron rols - chr3L 12052826 intron rols - chr3L_9_12050001 chr3L_12050001 RAL-765 854 chr3L 12252657 12252675 chr3L 12252758 12252776 5 101 3.5 0.5 2.0 1.7 119 chr3L 12252657 intron app - chr3L 12252716 intron app - chr3L 12252776 intron app - chr3L_5_12250001 chr3L_12250001 RAL-765 855 chr3L 12353938 12353943 chr3L 12354021 12354031 4 86 1.5 3.5 2.5 1.1 93 chr3L 12353938 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354031 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-765 856 chr3L 12491706 12491731 chr3L 12491789 12491814 4 83 0.0 1.5 0.8 2.2 108 chr3L 12491706 intergenic CG10657 -,CR45682 + chr3L 12491760 intergenic CG10657 -,CR45682 + chr3L 12491814 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-765 857 chr3L 12529523 12529539 chr3L 12529601 12529617 4 78 2.5 3.5 3.0 1.0 94 chr3L 12529523 intron nst - chr3L 12529570 intron nst - chr3L 12529617 intron nst - chr3L_4_12525001 chr3L_12525001 RAL-765 858 chr3L 12563397 12563416 chr3L 12563550 12563568 4 152 2.0 1.0 1.5 1.6 171 chr3L 12563397 intron sowah - chr3L 12563482 intron sowah - chr3L 12563568 intron sowah - chr3L_4_12560001 chr3L_12560001 RAL-765 859 chr3L 11777678 11777678 chr3L 12638619 12638625 5 860944 17.0 11.5 14.2 0.3 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_5_12205001 chr3L_12205001 RAL-765 860 chr3L 12668070 12668103 chr3L 12668155 12668188 8 85 0.0 3.5 1.8 2.9 118 chr3L 12668070 intergenic not near genes chr3L 12668129 intergenic not near genes chr3L 12668188 intergenic not near genes chr3L_8_12665001 chr3L_12665001 RAL-765 861 chr3L 12707098 12707122 chr3L 12707200 12707202 9 99 4.0 3.0 3.5 2.0 104 chr3L 12707098 intron mirr + chr3L 12707150 intron mirr + chr3L 12707202 intron mirr + chr3L_9_12705001 chr3L_12705001 RAL-765 862 chr3L 12917534 12917540 chr3L 12917621 12917627 4 87 5.0 4.0 4.5 0.7 93 chr3L 12917534 intergenic not near genes chr3L 12917580 intergenic not near genes chr3L 12917627 intergenic not near genes chr3L_4_12915001 chr3L_12915001 RAL-765 863 chr3L 12957790 12957815 chr3L 12962270 12962296 copia 6 4481 1.5 1.5 1.5 2.4 4506 chr3L 12957790 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962296 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-765 864 chr3L 13009862 13009862 chr3L 22908066 22908067 4 9898204 4.5 12.5 8.5 0.4 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_4_17955001 chr3L_17955001 RAL-765 865 chr3L 13015722 13015732 chr3L 13015804 13015814 4 82 1.0 2.0 1.5 1.6 92 chr3L 13015722 intergenic CG11267 +,MICAL-like - chr3L 13015768 intergenic CG11267 +,MICAL-like - chr3L 13015814 intergenic CG11267 +,MICAL-like - chr3L_4_13015001 chr3L_13015001 RAL-765 866 chr3L 13223220 13223242 chr3L 13223297 13223318 5 76 0.5 3.0 1.8 1.8 98 chr3L 13223220 intergenic not near genes chr3L 13223269 intergenic not near genes chr3L 13223318 intergenic not near genes chr3L_5_13220001 chr3L_13220001 RAL-765 867 chr3L 13261819 13261837 chr3L 13261909 13261927 6 90 2.0 2.5 2.2 1.9 108 chr3L 13261819 intron caps + chr3L 13261873 intron caps + chr3L 13261927 intron caps + chr3L_6_13260001 chr3L_13260001 RAL-765 868 chr3L 13432294 13432317 chr3L 13432393 13432416 7 99 4.0 1.5 2.8 1.8 122 chr3L 13432294 intron CG10713 - chr3L 13432355 intron CG10713 - chr3L 13432416 intron CG10713 - chr3L_7_13430001 chr3L_13430001 RAL-765 869 chr3L 13525154 13525190 chr3L 13532950 13532986 roo 13 7795 4.0 6.0 5.0 2.2 7832 chr3L 13525154 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_13_13525001 chr3L_13525001 RAL-765 870 chr3L 13605334 13605372 chr3L 13605411 13605450 5 78 2.5 2.0 2.2 1.6 116 chr3L 13605334 intron bru-3 - chr3L 13605392 intron bru-3 - chr3L 13605450 intron bru-3 - chr3L_5_13605001 chr3L_13605001 RAL-765 871 chr3L 13677528 13677543 chr3L 13677605 13677620 5 77 3.5 1.5 2.5 1.4 92 chr3L 13677528 intron bru-3 - chr3L 13677574 intron bru-3 - chr3L 13677620 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-765 872 chr3L 13740037 13740054 chr3L 13740127 13740145 4 91 0.5 2.0 1.2 1.8 108 chr3L 13740037 intron bru-3 - chr3L 13740091 intron bru-3 - chr3L 13740145 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-765 873 chr3L 13804549 13804561 chr3L 13822835 13822847 roo 5 18286 2.5 2.5 2.5 1.4 18298 chr3L 13804549 intergenic not near genes chr3L 13813698 intergenic not near genes chr3L 13822847 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-765 874 chr3L 14004439 14004471 chr3L 14004518 14004550 11 79 3.0 2.5 2.8 2.9 111 chr3L 14004439 intron upSET + chr3L 14004494 intron upSET + chr3L 14004550 intron upSET + chr3L_11_14000001 chr3L_14000001 RAL-765 875 chr3L 14055578 14055603 chr3L 14055673 14055698 6 95 0.5 3.5 2.0 2.0 120 chr3L 14055578 intron CG32138 + chr3L 14055638 intron CG32138 + chr3L 14055698 intron CG32138 + chr3L_6_14055001 chr3L_14055001 RAL-765 876 chr3L 14099428 14099451 chr3L 14099507 14099540 7 88 0.5 4.5 2.5 2.0 112 chr3L 14099428 intergenic not near genes chr3L 14099484 intergenic not near genes chr3L 14099540 intergenic not near genes chr3L_7_14095001 chr3L_14095001 RAL-765 877 chr3L 14171271 14171302 chr3L 14171354 14171383 8 82 0.5 1.0 0.8 4.4 112 chr3L 14171271 intergenic not near genes chr3L 14171327 intergenic not near genes chr3L 14171383 intergenic not near genes chr3L_8_14170001 chr3L_14170001 RAL-765 878 chr3L 14245571 14245591 chr3L 14245665 14245684 1360 6 94 1.5 1.5 1.5 2.4 113 chr3L 14245571 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-765 879 chr3L 14296001 14296008 chr3L 14296471 14296494 roo 4 482 1.5 5.0 3.2 1.0 493 chr3L 14296001 intron fz + chr3L 14296248 intron fz + chr3L 14296494 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-765 880 chr3L 14312025 14312051 chr3L 14316838 14316865 X-element 7 4812 3.5 2.5 3.0 1.8 4840 chr3L 14312025 exon fz + chr3L 14314445 intron fz + chr3L 14316865 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-765 881 chr3L 14338306 14338321 chr3L 14338402 14338417 4 96 1.0 0.5 0.8 2.2 111 chr3L 14338306 intron fz + chr3L 14338362 intron fz + chr3L 14338417 intron fz + chr3L_4_14335001 chr3L_14335001 RAL-765 882 chr3L 14356519 14356552 chr3L 14356599 14356630 6 79 2.0 1.0 1.5 2.4 111 chr3L 14356519 intron fz + chr3L 14356574 intron fz + chr3L 14356630 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-765 883 chr3L 14387660 14387684 chr3L 14387810 14387834 6 147 1.0 2.0 1.5 2.4 174 chr3L 14387660 intergenic not near genes chr3L 14387747 intergenic not near genes chr3L 14387834 intergenic not near genes chr3L_6_14385001 chr3L_14385001 RAL-765 884 chr3L 14522110 14522130 chr3L 14522207 14522229 4 98 0.0 0.5 0.2 3.3 119 chr3L 14522110 intron bbg - chr3L 14522170 intron bbg - chr3L 14522229 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-765 885 chr3L 14721181 14721203 chr3L 14723022 14723035 Rt1c 8 1841 4.0 2.5 3.2 1.9 1854 chr3L 14721181 intron ome + chr3L 14722108 intron ome + chr3L 14723035 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-765 886 chr3L 14861805 14861832 chr3L 14861884 14861912 4 80 0.0 2.0 1.0 2.0 107 chr3L 14861805 intron CG17839 + chr3L 14861858 intron CG17839 + chr3L 14861912 intron CG17839 + chr3L_4_14860001 chr3L_14860001 RAL-765 887 chr3L 14866833 14866835 chr3L 14866924 14866926 4 91 4.0 3.5 3.8 0.8 93 chr3L 14866833 exon CG17839 + chr3L 14866880 intron CG17839 + chr3L 14866926 intron CG17839 + chr3L_4_14865001 chr3L_14865001 RAL-765 888 chr3L 14917127 14917142 chr3L 14917280 14917295 5 153 1.0 2.5 1.8 1.8 168 chr3L 14917127 intron DCX-EMAP + chr3L 14917211 intron DCX-EMAP + chr3L 14917295 intron DCX-EMAP + chr3L_5_14915001 chr3L_14915001 RAL-765 889 chr3L 14993400 14993430 chr3L 14993501 14993532 12 102 1.5 1.5 1.5 4.8 132 chr3L 14993400 intron Zip71B + chr3L 14993466 intron Zip71B + chr3L 14993532 intron Zip71B + chr3L_12_14990001 chr3L_14990001 RAL-765 890 chr3L 15070109 15070119 chr3L 15070333 15070341 5 223 18.0 25.5 21.8 0.2 232 chr3L 15070109 exon cp309 - chr3L 15070225 exon cp309 - chr3L 15070341 exon cp309 - chr3L_5_15070001 chr3L_15070001 RAL-765 891 chr3L 15085057 15085082 chr3L 15086223 15086223 1360 4 1159 2.5 2.5 2.5 1.1 1166 chr3L 15085057 intron cp309 - chr3L 15085640 intron cp309 - chr3L 15086223 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-765 892 chr3L 15193694 15193704 chr3L 15193863 15193873 5 169 2.0 1.5 1.8 1.8 179 chr3L 15193694 intergenic not near genes chr3L 15193784 intergenic not near genes chr3L 15193873 intergenic not near genes chr3L_5_15190001 chr3L_15190001 RAL-765 893 chr3L 15261722 15261724 chr3L 22908066 22908066 5 7646343 4.5 12.5 8.5 0.5 7646344 chr3L 15261722 intergenic not near genes chr3L 19084894 intron Mkp3 - chr3L 22908066 intergenic not near genes chr3L_5_19080001 chr3L_19080001 RAL-765 894 chr3L 15321843 15321865 chr3L 15321923 15321945 6 79 1.5 2.5 2.0 2.0 102 chr3L 15321843 intergenic not near genes chr3L 15321894 intergenic not near genes chr3L 15321945 intergenic not near genes chr3L_6_15320001 chr3L_15320001 RAL-765 895 chr3L 15444660 15444685 chr3L 15444754 15444779 10 94 2.0 2.5 2.2 3.1 119 chr3L 15444660 intergenic not near genes chr3L 15444720 intergenic not near genes chr3L 15444779 intergenic not near genes chr3L_10_15440001 chr3L_15440001 RAL-765 896 chr3L 15899222 15899260 chr3L 15899789 15899827 jockey 9 562 1.5 4.5 3.0 2.2 605 chr3L 15899222 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899827 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-765 897 chr3L 15929208 15929220 chr3L 15938355 15938367 roo 4 9147 2.0 3.5 2.8 1.1 9159 chr3L 15929208 intron Pka-C3 - chr3L 15933788 intron Pka-C3 - chr3L 15938367 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-765 898 chr3L 15946505 15946517 chr3L 15946591 15946602 7 85 5.0 0.0 2.5 2.0 97 chr3L 15946505 intron Pka-C3 - chr3L 15946554 intron Pka-C3 - chr3L 15946602 intron Pka-C3 - chr3L_7_15945001 chr3L_15945001 RAL-765 899 chr3L 15979102 15979121 chr3L 15979216 15979235 9 114 3.5 3.5 3.5 2.0 133 chr3L 15979102 intron,intron brm -,CG17028 + chr3L 15979168 intron,intron brm -,CG17028 + chr3L 15979235 intron,intron brm -,CG17028 + chr3L_9_15975001 chr3L_15975001 RAL-765 900 chr3L 16015836 16015847 chr3L 16015914 16015925 5 78 2.5 1.5 2.0 1.7 89 chr3L 16015836 intergenic not near genes chr3L 16015880 intergenic not near genes chr3L 16015925 intergenic not near genes chr3L_5_16015001 chr3L_16015001 RAL-765 901 chr3L 16139019 16139032 chr3L 16139106 16139118 5 86 3.5 3.0 3.2 1.2 99 chr3L 16139019 3` UTR CG5151 - chr3L 16139068 3` UTR CG5151 - chr3L 16139118 3` UTR CG5151 - chr3L_5_16135001 chr3L_16135001 RAL-765 902 chr3L 16153892 16153914 chr3L 16153968 16153990 7 76 0.5 6.0 3.2 1.7 98 chr3L 16153892 intron CG5151 - chr3L 16153941 intron CG5151 - chr3L 16153990 intron CG5151 - chr3L_7_16150001 chr3L_16150001 RAL-765 903 chr3L 16158804 16158835 chr3L 16158889 16158919 5 84 0.0 1.0 0.5 3.3 115 chr3L 16158804 intron CG5151 - chr3L 16158862 intron CG5151 - chr3L 16158919 intron CG5151 - chr3L_5_16155001 chr3L_16155001 RAL-765 904 chr3L 16184104 16184137 chr3L 16188922 16188956 X-element 8 4819 2.5 2.5 2.5 2.3 4852 chr3L 16184104 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188956 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-765 905 chr3L 16220144 16220168 chr3L 16220262 16220286 6 118 0.0 0.5 0.2 5.0 142 chr3L 16220144 intergenic not near genes chr3L 16220215 intergenic not near genes chr3L 16220286 intergenic not near genes chr3L_6_16220001 chr3L_16220001 RAL-765 906 chr3L 16235007 16235035 chr3L 16235096 16235124 8 88 2.5 2.0 2.2 2.5 117 chr3L 16235007 intron l(3)72Dp + chr3L 16235066 intron l(3)72Dp + chr3L 16235124 intron l(3)72Dp + chr3L_8_16235001 chr3L_16235001 RAL-765 907 chr3L 16427103 16427116 chr3L 16427184 16427198 6 82 3.5 3.5 3.5 1.3 95 chr3L 16427103 intron,intron CG33158 +,dsx-c73A - chr3L 16427150 intron,intron CG33158 +,dsx-c73A - chr3L 16427198 intron,intron CG33158 +,dsx-c73A - chr3L_6_16425001 chr3L_16425001 RAL-765 908 chr3L 16457529 16457546 chr3L 16457624 16457641 7 94 1.0 2.0 1.5 2.8 112 chr3L 16457529 intron CG33158 + chr3L 16457585 intron CG33158 + chr3L 16457641 intron CG33158 + chr3L_7_16455001 chr3L_16455001 RAL-765 909 chr3L 16493977 16494011 chr3L 16494494 16494527 jockey 9 517 4.5 5.0 4.8 1.6 550 chr3L 16493977 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-765 910 chr3L 16503626 16503656 chr3L 16503703 16503732 5 77 2.0 1.0 1.5 2.0 106 chr3L 16503626 intron CG43373 - chr3L 16503679 intron CG43373 - chr3L 16503732 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-765 911 chr3L 16521811 16521838 chr3L 16521904 16521931 6 90 2.0 4.0 3.0 1.5 120 chr3L 16521811 intron CG43373 - chr3L 16521871 intron CG43373 - chr3L 16521931 intron CG43373 - chr3L_6_16520001 chr3L_16520001 RAL-765 912 chr3L 16560301 16560335 chr3L 16560386 16560420 12 85 4.0 2.0 3.0 3.0 119 chr3L 16560301 intergenic not near genes chr3L 16560360 intergenic not near genes chr3L 16560420 intergenic not near genes chr3L_12_16560001 chr3L_16560001 RAL-765 913 chr3L 16561116 16561141 chr3L 16561194 16561219 5 78 1.5 5.5 3.5 1.1 103 chr3L 16561116 intergenic not near genes chr3L 16561168 intergenic not near genes chr3L 16561219 intergenic not near genes chr3L_5_16560001 chr3L_16560001 RAL-765 914 chr3L 16616518 16616541 chr3L 16621846 16621869 297 6 5326 1.0 3.0 2.0 2.0 5351 chr3L 16616518 3` UTR Abl - chr3L 16619194 3` UTR Abl - chr3L 16621869 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-765 915 chr3L 16757647 16757669 chr3L 16757737 16757759 6 90 1.5 1.5 1.5 2.4 112 chr3L 16757647 intergenic not near genes chr3L 16757703 intergenic not near genes chr3L 16757759 intergenic not near genes chr3L_6_16755001 chr3L_16755001 RAL-765 916 chr3L 16815856 16815892 chr3L 16815942 16815974 6 84 1.5 1.0 1.2 2.7 118 chr3L 16815856 intron,intron nudC +,CG13024 - chr3L 16815915 intron,intron nudC +,CG13024 - chr3L 16815974 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-765 917 chr3L 16818756 16818780 chr3L 16818832 16818856 5 76 3.0 1.0 2.0 1.7 100 chr3L 16818756 intron,intron nudC +,CG13024 - chr3L 16818806 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-765 918 chr3L 16845024 16845044 chr3L 16845137 16845157 5 113 2.0 0.0 1.0 2.5 133 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845157 intergenic CG9669 -,CG9715 + chr3L_5_16845001 chr3L_16845001 RAL-765 919 chr3L 16869583 16869606 chr3L 16869666 16869689 8 83 0.5 2.5 1.5 3.2 106 chr3L 16869583 intron Lmpt + chr3L 16869636 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-765 920 chr3L 16912938 16912954 chr3L 16913016 16913032 6 78 0.0 0.0 0.0 6.0 94 chr3L 16912938 intron Lmpt + chr3L 16912985 intron Lmpt + chr3L 16913032 intron Lmpt + chr3L_6_16910001 chr3L_16910001 RAL-765 921 chr3L 16945725 16945761 chr3L 16954878 16954887 roo 17 9151 6.5 0.5 3.5 3.8 9162 chr3L 16945725 exon Obp73a + chr3L 16950306 intergenic not near genes chr3L 16954887 5` UTR Nc73EF + chr3L_17_16950001 chr3L_16950001 RAL-765 922 chr3L 17085011 17085034 chr3L 17094160 17094183 roo 6 9149 1.0 1.5 1.2 2.7 9172 chr3L 17085011 intron Rbp6 - chr3L 17089597 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-765 923 chr3L 17120470 17120683 chr3L 17120568 17120759 10 87 1.0 4.5 2.8 2.6 289 chr3L 17120470 intron Rbp6 - chr3L 17120614 intron Rbp6 - chr3L 17120759 intron Rbp6 - chr3L_10_17120001 chr3L_17120001 RAL-765 924 chr3L 17149170 17149189 chr3L 17149249 17149261 5 78 5.0 0.0 2.5 1.4 91 chr3L 17149170 intron Rbp6 - chr3L 17149216 intron Rbp6 - chr3L 17149261 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-765 925 chr3L 17257628 17257642 chr3L 17257697 17257720 7 72 2.0 3.0 2.5 2.0 92 chr3L 17257628 intron CR43870 + chr3L 17257674 intron CR43870 + chr3L 17257720 intron CR43870 + chr3L_7_17255001 chr3L_17255001 RAL-765 926 chr3L 17268998 17269014 chr3L 17269089 17269106 7 92 2.5 4.0 3.2 1.7 108 chr3L 17268998 intergenic not near genes chr3L 17269052 intergenic not near genes chr3L 17269106 intergenic not near genes chr3L_7_17265001 chr3L_17265001 RAL-765 927 chr3L 17313129 17313150 chr3L 17313212 17313232 4 83 2.0 2.5 2.2 1.2 103 chr3L 17313129 intergenic not near genes chr3L 17313180 intergenic not near genes chr3L 17313232 intergenic not near genes chr3L_4_17310001 chr3L_17310001 RAL-765 928 chr3L 17344632 17344653 chr3L 17344714 17344736 8 83 3.0 3.5 3.2 1.9 104 chr3L 17344632 exon brv2 - chr3L 17344684 5` UTR brv2 - chr3L 17344736 intergenic brv2 -,Mip - chr3L_8_17340001 chr3L_17340001 RAL-765 929 chr3L 17510749 17510765 chr3L 17510832 17510849 8 84 0.5 8.5 4.5 1.5 100 chr3L 17510749 exon Oatp74D + chr3L 17510799 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_8_17510001 chr3L_17510001 RAL-765 930 chr3L 17516980 17517011 chr3L 17524538 17524569 412 7 7556 3.5 3.5 3.5 1.6 7589 chr3L 17516980 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524569 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-765 931 chr3L 17577114 17577137 chr3L 17577190 17577213 5 75 2.5 1.0 1.8 1.8 99 chr3L 17577114 intron Eip74EF - chr3L 17577164 intron Eip74EF - chr3L 17577213 intron Eip74EF - chr3L_5_17575001 chr3L_17575001 RAL-765 932 chr3L 17586978 17586987 chr3L 17587112 17587121 4 134 1.0 3.0 2.0 1.3 143 chr3L 17586978 intron Eip74EF - chr3L 17587050 intron Eip74EF - chr3L 17587121 intron Eip74EF - chr3L_4_17585001 chr3L_17585001 RAL-765 933 chr3L 17594240 17594265 chr3L 17594321 17594346 5 81 4.0 1.0 2.5 1.4 106 chr3L 17594240 intron Eip74EF - chr3L 17594293 intron Eip74EF - chr3L 17594346 intron Eip74EF - chr3L_5_17590001 chr3L_17590001 RAL-765 934 chr3L 17730855 17730882 chr3L 17738184 17738212 mdg1 5 7330 4.0 1.5 2.8 1.3 7357 chr3L 17730855 intron Ccn + chr3L 17734534 intron Ccn + chr3L 17738212 intron Ccn + chr3L_5_17730001 chr3L_17730001 RAL-765 935 chr3L 17789850 17789868 chr3L 17789926 17789944 4 76 2.5 4.0 3.2 1.0 94 chr3L 17789850 intergenic not near genes chr3L 17789897 intergenic not near genes chr3L 17789944 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-765 936 chr3L 17790603 17790635 chr3L 17790868 17790900 4 265 4.0 2.0 3.0 1.0 297 chr3L 17790603 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790900 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-765 937 chr3L 17834326 17834358 chr3L 17834490 17834522 4 164 0.5 1.0 0.8 2.2 196 chr3L 17834326 intron Grd + chr3L 17834424 intron Grd + chr3L 17834522 intron Grd + chr3L_4_17830001 chr3L_17830001 RAL-765 938 chr3L 17837623 17837656 chr3L 17837711 17837740 17 87 3.5 3.0 3.2 4.0 117 chr3L 17837623 exon Grd + chr3L 17837682 intron Grd + chr3L 17837740 intron Grd + chr3L_17_17835001 chr3L_17835001 RAL-765 939 chr3L 17991577 17991604 chr3L 17991655 17991682 5 78 2.0 1.0 1.5 2.0 105 chr3L 17991577 intron Eip75B - chr3L 17991630 intron Eip75B - chr3L 17991682 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-765 940 chr3L 18000680 18000707 chr3L 18000757 18000784 9 77 1.0 1.5 1.2 4.1 104 chr3L 18000680 intron Eip75B - chr3L 18000732 intron Eip75B - chr3L 18000784 intron Eip75B - chr3L_9_18000001 chr3L_18000001 RAL-765 941 chr3L 18014804 18014814 chr3L 18015068 18015078 4 264 0.0 1.5 0.8 2.2 274 chr3L 18014804 intron Eip75B - chr3L 18014941 intron Eip75B - chr3L 18015078 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-765 942 chr3L 18042240 18042509 chr3L 18042318 18042587 5 78 1.0 1.0 1.0 2.5 347 chr3L 18042240 intron Eip75B - chr3L 18042414 intron Eip75B - chr3L 18042587 intron Eip75B - chr3L_5_18040001 chr3L_18040001 RAL-765 943 chr3L 18063125 18063159 chr3L 18063219 18063254 11 95 0.5 2.5 1.5 4.4 129 chr3L 18063125 intron Eip75B - chr3L 18063190 intron Eip75B - chr3L 18063254 intron Eip75B - chr3L_11_18060001 chr3L_18060001 RAL-765 944 chr3L 18074149 18074158 chr3L 18074295 18074304 5 145 1.5 0.5 1.0 2.5 155 chr3L 18074149 intergenic CG44004 - chr3L 18074226 intergenic CG44004 - chr3L 18074304 intergenic CG44004 - chr3L_5_18070001 chr3L_18070001 RAL-765 945 chr3L 18106252 18106280 chr3L 18106371 18106399 7 118 1.0 0.0 0.5 4.7 147 chr3L 18106252 intergenic CG13698 -,mRpS26 + chr3L 18106326 intergenic CG13698 -,mRpS26 + chr3L 18106399 intergenic mRpS26 +,CG13698 - chr3L_7_18105001 chr3L_18105001 RAL-765 946 chr3L 18107624 18107650 chr3L 18107717 18107743 5 93 0.0 3.0 1.5 2.0 119 chr3L 18107624 intergenic mRpS26 +,CG5147 - chr3L 18107684 intergenic CG5147 -,mRpS26 + chr3L 18107743 intergenic CG5147 -,mRpS26 + chr3L_5_18105001 chr3L_18105001 RAL-765 947 chr3L 18133025 18133044 chr3L 18133115 18133134 4 90 0.5 0.5 0.5 2.7 109 chr3L 18133025 intergenic Cyp312a1 - chr3L 18133080 intergenic Cyp312a1 - chr3L 18133134 intergenic Cyp312a1 - chr3L_4_18130001 chr3L_18130001 RAL-765 948 chr3L 18223167 18223188 chr3L 18223250 18223261 5 81 1.0 0.0 0.5 3.3 94 chr3L 18223167 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223261 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-765 949 chr3L 18377209 18377229 chr3L 18377282 18377305 5 75 1.5 3.0 2.2 1.6 96 chr3L 18377209 intergenic not near genes chr3L 18377257 intergenic not near genes chr3L 18377305 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-765 950 chr3L 18408740 18408757 chr3L 18408826 18408843 4 86 1.5 1.5 1.5 1.6 103 chr3L 18408740 intergenic not near genes chr3L 18408792 intergenic not near genes chr3L 18408843 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-765 951 chr3L 18445253 18445275 chr3L 18445331 18445353 4 78 0.0 0.0 0.0 4.0 100 chr3L 18445253 intergenic not near genes chr3L 18445303 intergenic not near genes chr3L 18445353 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-765 952 chr3L 18528633 18528658 chr3L 18537794 18537819 roo 7 9161 1.5 1.0 1.2 3.2 9186 chr3L 18528633 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-765 953 chr3L 18546706 18546731 chr3L 18546800 18546825 4 94 2.0 2.5 2.2 1.2 119 chr3L 18546706 intergenic not near genes chr3L 18546766 intergenic not near genes chr3L 18546825 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-765 954 chr3L 18593955 18593978 chr3L 18595935 18595958 Doc 6 1980 2.0 0.0 1.0 3.0 2003 chr3L 18593955 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18595958 intergenic CR45389 + chr3L_6_18590001 chr3L_18590001 RAL-765 955 chr3L 18638576 18638609 chr3L 18638670 18638703 4 94 1.5 1.5 1.5 1.6 127 chr3L 18638576 intron MYPT-75D + chr3L 18638640 intron MYPT-75D + chr3L 18638703 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-765 956 chr3L 18701136 18701159 chr3L 18701224 18701247 6 88 1.0 1.5 1.2 2.7 111 chr3L 18701136 intergenic not near genes chr3L 18701192 intergenic not near genes chr3L 18701247 intergenic not near genes chr3L_6_18700001 chr3L_18700001 RAL-765 957 chr3L 18710758 18710788 chr3L 18718710 18718740 Stalker2 4 7949 0.5 1.5 1.0 2.0 7982 chr3L 18710758 intergenic not near genes chr3L 18714749 intergenic not near genes chr3L 18718740 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-765 958 chr3L 18753556 18753566 chr3L 18753638 18753648 5 82 0.5 1.0 0.8 2.8 92 chr3L 18753556 intron ftz-f1 - chr3L 18753602 intron ftz-f1 - chr3L 18753648 intron ftz-f1 - chr3L_5_18750001 chr3L_18750001 RAL-765 959 chr3L 18772410 18772439 chr3L 18781091 18781120 roo 6 8681 2.0 3.5 2.8 1.6 8710 chr3L 18772410 intron ftz-f1 - chr3L 18776765 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-765 960 chr3L 18792573 18792598 chr3L 18792655 18792680 7 82 3.0 1.0 2.0 2.3 107 chr3L 18792573 intron ftz-f1 - chr3L 18792626 intron ftz-f1 - chr3L 18792680 intron ftz-f1 - chr3L_7_18790001 chr3L_18790001 RAL-765 961 chr3L 18831851 18831866 chr3L 18831937 18831952 5 86 1.5 0.5 1.0 2.5 101 chr3L 18831851 intron Indy - chr3L 18831902 intron Indy - chr3L 18831952 exon Indy - chr3L_5_18830001 chr3L_18830001 RAL-765 962 chr3L 18878668 18878687 chr3L 18878750 18878769 4 82 1.5 0.5 1.0 2.0 101 chr3L 18878668 3` UTR CG3961 - chr3L 18878718 3` UTR CG3961 - chr3L 18878769 3` UTR CG3961 - chr3L_4_18875001 chr3L_18875001 RAL-765 963 chr3L 18896762 18896791 chr3L 18896897 18896925 6 134 1.5 2.5 2.0 2.0 163 chr3L 18896762 intron CG3902 - chr3L 18896844 intron CG3902 - chr3L 18896925 intron CG3902 - chr3L_6_18895001 chr3L_18895001 RAL-765 964 chr3L 19008847 19008867 chr3L 19009185 19009205 jockey 6 338 5.5 3.5 4.5 1.1 358 chr3L 19008847 intron nkd - chr3L 19009026 intron nkd - chr3L 19009205 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-765 965 chr3L 19018835 19018861 chr3L 19018926 19018952 7 91 1.0 1.5 1.2 3.2 117 chr3L 19018835 intron nkd - chr3L 19018894 intron nkd - chr3L 19018952 intron nkd - chr3L_7_19015001 chr3L_19015001 RAL-765 966 chr3L 19090739 19090754 chr3L 19090820 19090829 6 80 2.0 3.5 2.8 1.6 90 chr3L 19090739 5` UTR CR45386 + chr3L 19090784 5` UTR CR45386 + chr3L 19090829 5` UTR CR45386 + chr3L_6_19090001 chr3L_19090001 RAL-765 967 chr3L 19115641 19115671 chr3L 19115821 19115846 BS 4 179 2.5 1.5 2.0 1.3 205 chr3L 19115641 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115846 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-765 968 chr3L 19117041 19117074 chr3L 19124488 19124520 mdg1 15 7446 2.5 1.5 2.0 5.0 7479 chr3L 19117041 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_15_19120001 chr3L_19120001 RAL-765 969 chr3L 19182398 19182415 chr3L 19182479 19182495 4 81 0.5 1.5 1.0 2.0 97 chr3L 19182398 intron fz2 - chr3L 19182446 intron fz2 - chr3L 19182495 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-765 970 chr3L 19220637 19220637 chr3L 22908066 22908066 4 3687429 8.5 12.5 10.5 0.3 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-765 971 chr3L 19248849 19248872 chr3L 19248939 19248962 6 90 1.5 0.0 0.8 3.3 113 chr3L 19248849 intergenic not near genes chr3L 19248906 intergenic not near genes chr3L 19248962 intergenic not near genes chr3L_6_19245001 chr3L_19245001 RAL-765 972 chr3L 19335767 19335774 chr3L 19335853 19335861 4 87 2.0 5.0 3.5 0.9 94 chr3L 19335767 intron pip - chr3L 19335814 intron pip - chr3L 19335861 intron pip - chr3L_4_19335001 chr3L_19335001 RAL-765 973 chr3L 19426746 19426782 chr3L 19426824 19426860 8 78 3.5 3.0 3.2 1.9 114 chr3L 19426746 intergenic not near genes chr3L 19426803 intergenic not near genes chr3L 19426860 intergenic not near genes chr3L_8_19425001 chr3L_19425001 RAL-765 974 chr3L 19430401 19430412 chr3L 19430479 19430490 5 78 2.5 0.5 1.5 2.0 89 chr3L 19430401 intergenic not near genes chr3L 19430446 intergenic not near genes chr3L 19430490 intergenic not near genes chr3L_5_19430001 chr3L_19430001 RAL-765 975 chr3L 19527922 19527956 chr3L 19528001 19528035 6 76 2.0 3.0 2.5 1.7 113 chr3L 19527922 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528035 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-765 976 chr3L 19848504 19848526 chr3L 19857694 19857716 roo 11 9190 3.0 1.5 2.2 3.4 9212 chr3L 19848504 intron Papss + chr3L 19853110 intron Papss + chr3L 19857716 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-765 977 chr3L 19861825 19861853 chr3L 19863610 19863641 S-element 9 1787 3.5 1.5 2.5 2.6 1816 chr3L 19861825 5` UTR CR45433 + chr3L 19862733 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-765 978 chr3L 19981203 19981217 chr3L 19981283 19981297 4 80 3.5 1.0 2.2 1.2 94 chr3L 19981203 intergenic CG17732 + chr3L 19981250 intergenic CG17732 + chr3L 19981297 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-765 979 chr3L 19981439 19981456 chr3L 19981890 19981907 6 451 0.5 2.0 1.2 2.7 468 chr3L 19981439 intergenic CG17732 + chr3L 19981673 intergenic CG17732 + chr3L 19981907 exon CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-765 980 chr3L 20031080 20031104 chr3L 20031161 20031184 6 81 1.5 1.5 1.5 2.4 104 chr3L 20031080 intergenic not near genes chr3L 20031132 intergenic not near genes chr3L 20031184 intergenic not near genes chr3L_6_20030001 chr3L_20030001 RAL-765 981 chr3L 20096265 20096281 chr3L 20096373 20096388 5 108 1.5 2.5 2.0 1.7 123 chr3L 20096265 intergenic not near genes chr3L 20096326 intergenic not near genes chr3L 20096388 intergenic not near genes chr3L_5_20095001 chr3L_20095001 RAL-765 982 chr3L 20113483 20113507 chr3L 20113578 20113602 5 95 4.0 2.0 3.0 1.2 119 chr3L 20113483 intergenic not near genes chr3L 20113542 intergenic not near genes chr3L 20113602 intergenic not near genes chr3L_5_20110001 chr3L_20110001 RAL-765 983 chr3L 20113660 20113690 chr3L 20122917 20122946 roo 4 9257 3.0 0.5 1.8 1.4 9286 chr3L 20113660 intergenic not near genes chr3L 20118303 intergenic not near genes chr3L 20122946 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-765 984 chr3L 20143081 20143107 chr3L 20143161 20143187 4 80 1.5 2.5 2.0 1.3 106 chr3L 20143081 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143187 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-765 985 chr3L 20257333 20257360 chr3L 20258453 20258480 pogo 10 1119 1.0 5.0 3.0 2.5 1147 chr3L 20257333 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258480 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-765 986 chr3L 20345604 20345631 chr3L 20345685 20345712 10 80 3.5 4.0 3.8 2.1 108 chr3L 20345604 intergenic Rbbp5 - chr3L 20345658 intergenic Rbbp5 - chr3L 20345712 intergenic Rbbp5 - chr3L_10_20345001 chr3L_20345001 RAL-765 987 chr3L 20386944 20386972 chr3L 20387046 20387069 12 102 3.5 3.0 3.2 2.9 125 chr3L 20386944 intron fbl + chr3L 20387006 intron fbl + chr3L 20387069 intron fbl + chr3L_12_20385001 chr3L_20385001 RAL-765 988 chr3L 20443879 20443912 chr3L 20444002 20444035 6 123 1.5 0.5 1.0 3.0 156 chr3L 20443879 intron CG5910 + chr3L 20443957 intron CG5910 + chr3L 20444035 intron CG5910 + chr3L_6_20440001 chr3L_20440001 RAL-765 989 chr3L 20476758 20476784 chr3L 20484357 20484383 springer 7 7599 3.5 3.5 3.5 1.6 7625 chr3L 20476758 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-765 990 chr3L 20487664 20487673 chr3L 20488114 20488124 INE-1 4 451 9.0 0.5 4.8 0.7 460 chr3L 20487664 intron ZnT77C - chr3L 20487894 intron ZnT77C - chr3L 20488124 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-765 991 chr3L 20590064 20590096 chr3L 20590603 20590635 412 6 537 0.5 2.5 1.5 2.4 571 chr3L 20590064 intergenic not near genes chr3L 20590350 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-765 992 chr3L 20761334 20761360 chr3L 20761416 20761442 10 82 0.5 0.5 0.5 6.7 108 chr3L 20761334 intergenic not near genes chr3L 20761388 intergenic not near genes chr3L 20761442 intergenic not near genes chr3L_10_20760001 chr3L_20760001 RAL-765 993 chr3L 20831015 20831048 chr3L 20831160 20831193 9 145 4.0 3.0 3.5 2.0 178 chr3L 20831015 intron Pka-R1 + chr3L 20831104 intron Pka-R1 + chr3L 20831193 intron Pka-R1 + chr3L_9_20830001 chr3L_20830001 RAL-765 994 chr3L 20861712 20861730 chr3L 20861791 20861813 6 82 4.5 3.5 4.0 1.2 101 chr3L 20861712 intron CG32432 - chr3L 20861762 intron CG32432 - chr3L 20861813 intron CG32432 - chr3L_6_20860001 chr3L_20860001 RAL-765 995 chr3L 20864765 20864799 chr3L 20864851 20864885 11 84 1.5 2.0 1.8 3.9 120 chr3L 20864765 intron CG32432 - chr3L 20864825 intron CG32432 - chr3L 20864885 intron CG32432 - chr3L_11_20860001 chr3L_20860001 RAL-765 996 chr3L 20986760 20986786 chr3L 20986838 20986864 5 78 2.5 2.5 2.5 1.4 104 chr3L 20986760 intergenic not near genes chr3L 20986812 intergenic not near genes chr3L 20986864 intergenic not near genes chr3L_5_20985001 chr3L_20985001 RAL-765 997 chr3L 21014921 21014945 chr3L 21023402 21023424 Tirant 8 8478 5.0 5.0 5.0 1.3 8503 chr3L 21014921 intron skd - chr3L 21019172 intron skd - chr3L 21023424 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-765 998 chr3L 21151864 21151890 chr3L 21156948 21156974 flea 9 5084 3.0 3.5 3.2 2.1 5110 chr3L 21151864 intron Ac78C - chr3L 21154419 intron Ac78C - chr3L 21156974 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-765 999 chr3L 21158595 21158629 chr3L 21158671 21158705 11 76 0.5 1.5 1.0 5.5 110 chr3L 21158595 intron Ac78C - chr3L 21158650 intron Ac78C - chr3L 21158705 intron Ac78C - chr3L_11_21155001 chr3L_21155001 RAL-765 1000 chr3L 21384804 21384836 chr3L 21384908 21384938 7 102 2.5 2.0 2.2 2.2 134 chr3L 21384804 intron rgn + chr3L 21384871 intron rgn + chr3L 21384938 intron rgn + chr3L_7_21380001 chr3L_21380001 RAL-765 1001 chr3L 21498832 21498867 chr3L 21500468 21500503 1360 14 1633 4.0 6.0 5.0 2.3 1671 chr3L 21498832 intron Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500503 intron Glg1 - chr3L_14_21495001 chr3L_21495001 RAL-765 1002 chr3L 21749314 21749350 chr3L 21754474 21754510 Doc 8 5159 1.5 4.5 3.0 2.0 5196 chr3L 21749314 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-765 1003 chr3L 21799943 21799959 chr3L 21800028 21800044 6 85 3.0 2.5 2.8 1.6 101 chr3L 21799943 intergenic not near genes chr3L 21799994 intergenic not near genes chr3L 21800044 intergenic not near genes chr3L_6_21795001 chr3L_21795001 RAL-765 1004 chr3L 21828942 21828973 chr3L 21829028 21829060 10 86 2.0 5.0 3.5 2.2 118 chr3L 21828942 intergenic CR43309 -,CG32448 - chr3L 21829001 intergenic CR43309 - chr3L 21829060 intergenic CR43309 - chr3L_10_21825001 chr3L_21825001 RAL-765 1005 chr3L 21836728 21836757 chr3L 21836813 21836842 9 85 0.5 2.0 1.2 4.1 114 chr3L 21836728 3` UTR P5CDh1 - chr3L 21836785 3` UTR P5CDh1 - chr3L 21836842 3` UTR P5CDh1 - chr3L_9_21835001 chr3L_21835001 RAL-765 1006 chr3L 21847426 21847458 chr3L 21847522 21847554 11 96 1.0 0.0 0.5 7.3 128 chr3L 21847426 intron mub + chr3L 21847490 intron mub + chr3L 21847554 intron mub + chr3L_11_21845001 chr3L_21845001 RAL-765 1007 chr3L 21872427 21872452 chr3L 21872504 21872531 8 79 1.0 1.0 1.0 4.0 104 chr3L 21872427 intron mub + chr3L 21872479 intron mub + chr3L 21872531 intron mub + chr3L_8_21870001 chr3L_21870001 RAL-765 1008 chr3L 21886391 21886415 chr3L 21886474 21886498 5 83 2.5 0.5 1.5 2.0 107 chr3L 21886391 intron,intron mub +,CR43878 - chr3L 21886444 intron,intron mub +,CR43878 - chr3L 21886498 intron,intron mub +,CR43878 - chr3L_5_21885001 chr3L_21885001 RAL-765 1009 chr3L 21905344 21905361 chr3L 21905417 21905441 6 79 4.5 5.0 4.8 1.0 97 chr3L 21905344 intron mub + chr3L 21905392 intron mub + chr3L 21905441 intron mub + chr3L_6_21905001 chr3L_21905001 RAL-765 1010 chr3L 22001332 22001367 chr3L 22001411 22001445 9 78 0.5 1.5 1.0 4.5 113 chr3L 22001332 intergenic not near genes chr3L 22001388 intergenic not near genes chr3L 22001445 intergenic not near genes chr3L_9_22000001 chr3L_22000001 RAL-765 1011 chr3L 22099677 22099702 chr3L 22105863 22105888 3S18 9 6186 2.0 3.0 2.5 2.6 6211 chr3L 22099677 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105888 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-765 1012 chr3L 22130504 22130523 chr3L 22130650 22130669 5 146 1.5 3.0 2.2 1.6 165 chr3L 22130504 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_5_22130001 chr3L_22130001 RAL-765 1013 chr3L 22137657 22137690 chr3L 22137744 22137777 6 87 0.5 2.5 1.5 2.4 120 chr3L 22137657 intron olf413 + chr3L 22137717 intron olf413 + chr3L 22137777 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-765 1014 chr3L 22169453 22169486 chr3L 22169546 22169579 8 92 2.0 0.5 1.2 3.6 126 chr3L 22169453 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169579 intron olf413 + chr3L_8_22165001 chr3L_22165001 RAL-765 1015 chr3L 22179106 22179115 chr3L 22179188 22179201 4 85 1.5 1.5 1.5 1.6 95 chr3L 22179106 intron olf413 + chr3L 22179154 intron olf413 + chr3L 22179201 intron olf413 + chr3L_4_22175001 chr3L_22175001 RAL-765 1016 chr3L 22195342 22195367 chr3L 22195472 22195497 11 131 1.0 3.5 2.2 3.4 155 chr3L 22195342 intron olf413 + chr3L 22195420 intron olf413 + chr3L 22195497 intron olf413 + chr3L_11_22195001 chr3L_22195001 RAL-765 1017 chr3L 22328059 22328092 chr3L 22328158 22328191 8 98 3.0 3.0 3.0 2.0 132 chr3L 22328059 intron Ten-m - chr3L 22328125 intron Ten-m - chr3L 22328191 intron Ten-m - chr3L_8_22325001 chr3L_22325001 RAL-765 1018 chr3L 22411370 22411399 chr3L 22411447 22411453 9 73 1.0 3.0 2.0 3.0 83 chr3L 22411370 intergenic not near genes chr3L 22411412 intergenic not near genes chr3L 22411453 intergenic not near genes chr3L_9_22410001 chr3L_22410001 RAL-765 1019 chr3L 22447199 22447231 chr3L 22447290 22447322 14 91 2.5 3.0 2.8 3.7 123 chr3L 22447199 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_14_22445001 chr3L_22445001 RAL-765 1020 chr3L 22507128 22507150 chr3L 22507214 22507237 8 85 4.0 1.0 2.5 2.3 109 chr3L 22507128 intergenic not near genes chr3L 22507182 intergenic not near genes chr3L 22507237 intergenic not near genes chr3L_8_22505001 chr3L_22505001 RAL-765 1021 chr3L 22570426 22570453 chr3L 22570570 22570597 8 144 5.5 4.0 4.8 1.4 171 chr3L 22570426 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570597 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-765 1022 chr3L 22577632 22577644 chr3L 22582405 22582431 Doc 6 4785 3.0 4.5 3.8 1.2 4799 chr3L 22577632 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582431 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-765 1023 chr3L 22617197 22617215 chr3L 22624648 22624667 blood 8 7452 4.0 2.0 3.0 2.0 7470 chr3L 22617197 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-765 1024 chr3L 22732475 22732496 chr3L 22732556 22732577 8 81 1.5 5.0 3.2 1.9 102 chr3L 22732475 intron CG11367 + chr3L 22732526 intron CG11367 + chr3L 22732577 intron CG11367 + chr3L_8_22730001 chr3L_22730001 RAL-765 1025 chr3L 22761386 22761417 chr3L 22766820 22766851 Ivk 10 5434 1.5 3.0 2.2 3.1 5465 chr3L 22761386 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_10_22760001 chr3L_22760001 RAL-765 1026 chr3L 22853692 22853720 chr3L 22853778 22853805 9 86 2.5 3.5 3.0 2.2 113 chr3L 22853692 5` UTR CR43426 + chr3L 22853748 5` UTR CR43426 + chr3L 22853805 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-765 1027 chr3L 22865982 22866004 chr3L 22867115 22867137 Doc 4 1132 1.5 2.5 2.0 1.3 1155 chr3L 22865982 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867137 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-765 1028 chr3L 19220633 19220636 chr3L 22908066 22908066 12 3687432 8.5 12.5 10.5 1.0 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_12_21060001 chr3L_21060001 RAL-765 1029 chr3L 19220633 19220637 chr3L 22908067 22908067 6 3687432 8.5 13.0 10.8 0.5 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-765 1030 chr3L 22974367 22974374 chr3L 22974445 22974453 4 79 3.5 2.5 3.0 1.0 86 chr3L 22974367 intergenic not near genes chr3L 22974410 intergenic not near genes chr3L 22974453 intergenic not near genes chr3L_4_22970001 chr3L_22970001 RAL-765 1031 chr3L 23042229 23042256 chr3L 23048982 23048984 gypsy6 4 6747 3.0 0.0 1.5 1.6 6755 chr3L 23042229 intergenic not near genes chr3L 23045606 intergenic not near genes chr3L 23048984 intergenic not near genes chr3L_4_23045001 chr3L_23045001 RAL-765 1032 chr3L 23204708 23204734 chr3L 23204796 23204820 10 88 1.5 3.5 2.5 2.9 112 chr3L 23204708 intergenic not near genes chr3L 23204764 intergenic not near genes chr3L 23204820 intergenic not near genes chr3L_10_23200001 chr3L_23200001 RAL-765 1033 chr3L 23251951 23251966 chr3L 23252068 23252083 4 117 1.0 1.5 1.2 1.8 132 chr3L 23251951 intron nAChRalpha4 + chr3L 23252017 intron nAChRalpha4 + chr3L 23252083 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-765 1034 chr3L 23428243 23428273 chr3L 23428321 23428353 13 80 3.0 2.0 2.5 3.7 110 chr3L 23428243 intergenic not near genes chr3L 23428298 intergenic not near genes chr3L 23428353 intergenic not near genes chr3L_13_23425001 chr3L_23425001 RAL-765 1035 chr3L 24168792 24168818 chr3L 24176120 24176146 ZAM 7 7328 3.0 4.5 3.8 1.5 7354 chr3L 24168792 intron Snap25 + chr3L 24172469 intron Snap25 + chr3L 24176146 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-765 1036 chr3L 25464026 25464099 chr3L 25464113 25464197 14 93 5.0 4.5 4.8 2.4 171 chr3L 25464026 intergenic not near genes chr3L 25464112 intergenic not near genes chr3L 25464197 intergenic not near genes chr3L_14_25460001 chr3L_25460001 RAL-765 1037 chr3L 25513578 25513599 chr3L 25513657 25513676 5 78 2.0 3.5 2.8 1.3 98 chr3L 25513578 intron CG41343 - chr3L 25513627 intron CG41343 - chr3L 25513676 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-765 1038 chr3L 25514876 25514904 chr3L 25514968 25514995 4 91 2.5 1.5 2.0 1.3 119 chr3L 25514876 intron CG41343 - chr3L 25514936 intron CG41343 - chr3L 25514995 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-765 1039 chr3L 25627821 25627826 chr3L 25627907 25627911 4 86 2.0 3.5 2.8 1.1 90 chr3L 25627821 intron CG41343 - chr3L 25627866 intron CG41343 - chr3L 25627911 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-765 1040 chr3L 25842481 25842497 chr3L 25842567 25842583 7 86 1.0 0.5 0.8 3.9 102 chr3L 25842481 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842583 intron CG40178 - chr3L_7_25840001 chr3L_25840001 RAL-765 1041 chr3L 26694926 26694959 chr3L 26695005 26695039 6 75 0.5 1.0 0.8 3.3 113 chr3L 26694926 intergenic not near genes chr3L 26694982 intergenic not near genes chr3L 26695039 intergenic not near genes chr3L_6_26690001 chr3L_26690001 RAL-765 1042 chr3L 27167948 27167980 chr3L 27168066 27168076 11 115 2.5 1.5 2.0 3.7 128 chr3L 27167948 intergenic not near genes chr3L 27168012 intergenic not near genes chr3L 27168076 intergenic not near genes chr3L_11_27165001 chr3L_27165001 RAL-765 1043 chr3L 27284252 27284265 chr3L 27284358 27284371 5 106 1.0 5.0 3.0 1.2 119 chr3L 27284252 intron Dbp80 + chr3L 27284312 intron Dbp80 + chr3L 27284371 intron Dbp80 + chr3L_5_27280001 chr3L_27280001 RAL-765 1044 chr3L 27284267 27284270 chr3L 27284355 27284376 4 101 1.0 5.0 3.0 1.0 109 chr3L 27284267 intron Dbp80 + chr3L 27284322 intron Dbp80 + chr3L 27284376 intron Dbp80 + chr3L_4_27280001 chr3L_27280001 RAL-765 1045 chr3L 27368879 27368900 chr3L 27369424 27369445 4 545 2.0 1.0 1.5 1.6 566 chr3L 27368879 intron Dbp80 + chr3L 27369162 intron Dbp80 + chr3L 27369445 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-765 1046 chr3L 22908066 22908067 chr3L 27698695 27698695 micropia 4 4790628 14.0 2.0 8.0 0.4 4790629 chr3L 22908066 intergenic not near genes chr3L 25303380 intron CG40467 - chr3L 27698695 intergenic not near genes chr3L_4_25300001 chr3L_25300001 RAL-765 1047 chr3L 27727640 27727654 chr3L 27728746 27728761 G-element 4 1106 1.5 1.5 1.5 1.6 1121 chr3L 27727640 intergenic not near genes chr3L 27728200 intergenic not near genes chr3L 27728761 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-765 1048 chr3L 27980696 27980725 chr3L 27985494 27985523 Doc 4 4798 0.0 1.0 0.5 2.7 4827 chr3L 27980696 intron CG17514 - chr3L 27983110 intron CG17514 - chr3L 27985523 intron CG17514 - chr3L_4_27980001 chr3L_27980001 RAL-765 1049 chr3R 1521167 1521173 chr3R 1521253 1521261 6 88 4.5 6.5 5.5 0.9 94 chr3R 1521167 intergenic not near genes chr3R 1521214 intergenic not near genes chr3R 1521261 intergenic not near genes chr3R_6_1520001 chr3R_1520001 RAL-765 1050 chr3R 1521174 1521182 chr3R 1521245 1521270 11 82 5.0 5.5 5.2 1.8 96 chr3R 1521174 intergenic not near genes chr3R 1521222 intergenic not near genes chr3R 1521270 intergenic not near genes chr3R_11_1520001 chr3R_1520001 RAL-765 1051 chr3R 1953153 1953166 chr3R 1958538 1958551 Cr1a 4 5385 17.0 9.5 13.2 0.3 5398 chr3R 1953153 intergenic not near genes chr3R 1955852 intergenic not near genes chr3R 1958551 intergenic not near genes chr3R_4_1955001 chr3R_1955001 RAL-765 1052 chr3R 2534139 2534164 chr3R 2541707 2541733 11 7567 7.0 11.5 9.2 1.1 7594 chr3R 2534139 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541733 intergenic not near genes chr3R_11_2535001 chr3R_2535001 RAL-765 1053 chr3R 3178701 3178714 chr3R 3595185 3595198 10 416484 2.0 10.0 6.0 1.4 416497 chr3R 3178701 intron CG42617 - chr3R 3386950 intergenic not near genes chr3R 3595198 intergenic not near genes chr3R_10_3385001 chr3R_3385001 RAL-765 1054 chr3R 4063810 4063826 chr3R 4069090 4069106 4 5280 4.0 4.0 4.0 0.8 5296 chr3R 4063810 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-765 1055 chr3R 4366756 4366776 chr3R 4375139 4375159 roo 7 8382 1.5 4.0 2.8 1.8 8403 chr3R 4366756 3` UTR CG1090 + chr3R 4370958 intergenic not near genes chr3R 4375159 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 RAL-765 1056 chr3R 4408412 4408439 chr3R 4412716 4412743 Juan 5 4304 2.5 1.0 1.8 1.8 4331 chr3R 4408412 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-765 1057 chr3R 4609548 4609571 chr3R 4610712 4610735 1360 6 1162 4.0 3.0 3.5 1.3 1187 chr3R 4609548 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610735 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-765 1058 chr3R 4625321 4625346 chr3R 4625707 4625732 7 386 3.0 4.5 3.8 1.5 411 chr3R 4625321 intron 5-HT2A + chr3R 4625526 intron 5-HT2A + chr3R 4625732 intron 5-HT2A + chr3R_7_4625001 chr3R_4625001 RAL-765 1059 chr3R 4729141 4729168 chr3R 4729416 4729443 11 274 3.5 2.5 3.0 2.8 302 chr3R 4729141 intron Nep2 - chr3R 4729292 intron Nep2 - chr3R 4729443 intron Nep2 - chr3R_11_4725001 chr3R_4725001 RAL-765 1060 chr3R 4745064 4745096 chr3R 4745208 4745240 4 138 2.5 3.0 2.8 1.1 176 chr3R 4745064 intron tacc - chr3R 4745152 intron tacc - chr3R 4745240 intron tacc - chr3R_4_4745001 chr3R_4745001 RAL-765 1061 chr3R 4753239 4753270 chr3R 4757542 4757561 F-element 11 4302 5.5 5.5 5.5 1.7 4322 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757561 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-765 1062 chr3R 4759725 4759749 chr3R 4761220 4761246 hopper2 9 1496 4.0 7.5 5.8 1.3 1521 chr3R 4759725 intron,intron atms +,CG44098 - chr3R 4760486 intron,intron atms +,CG44098 - chr3R 4761246 intron,intron atms +,CG44098 - chr3R_9_4760001 chr3R_4760001 RAL-765 1063 chr3R 4769158 4769191 chr3R 4769236 4769269 11 76 2.5 2.5 2.5 3.1 111 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-765 1064 chr3R 4861566 4861597 chr3R 4861647 4861677 8 76 2.0 4.0 3.0 2.0 111 chr3R 4861566 intron opa + chr3R 4861622 intron opa + chr3R 4861677 intron opa + chr3R_8_4860001 chr3R_4860001 RAL-765 1065 chr3R 5045849 5045865 chr3R 5052951 5052967 HMS-Beagle 5 7102 7.5 1.0 4.2 1.0 7118 chr3R 5045849 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052967 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-765 1066 chr3R 5067994 5068012 chr3R 5073508 5073527 mdg3 8 5516 2.0 6.0 4.0 1.6 5533 chr3R 5067994 intergenic not near genes chr3R 5070760 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_8_5070001 chr3R_5070001 RAL-765 1067 chr3R 5236221 5236246 chr3R 5236347 5236374 6 128 1.5 4.0 2.8 1.6 153 chr3R 5236221 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236298 3` UTR rtp - chr3R 5236374 3` UTR rtp - chr3R_6_5235001 chr3R_5235001 RAL-765 1068 chr3R 5250879 5250913 chr3R 5250991 5251023 6 111 2.0 1.0 1.5 2.4 144 chr3R 5250879 intron CG12163 - chr3R 5250951 intron CG12163 - chr3R 5251023 intron CG12163 - chr3R_6_5250001 chr3R_5250001 RAL-765 1069 chr3R 5278092 5278121 chr3R 5278173 5278202 7 81 1.5 4.5 3.0 1.8 110 chr3R 5278092 intron mtd - chr3R 5278147 intron mtd - chr3R 5278202 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-765 1070 chr3R 5338396 5338430 chr3R 5343573 5343607 Rt1c 22 5177 5.0 8.0 6.5 2.9 5211 chr3R 5338396 intron mtd - chr3R 5341002 intron mtd - chr3R 5343607 intron mtd - chr3R_22_5340001 chr3R_5340001 RAL-765 1071 chr3R 5368016 5368051 chr3R 5368111 5368146 15 94 3.0 5.0 4.0 3.0 130 chr3R 5368016 5` UTR Cerk - chr3R 5368081 5` UTR Cerk - chr3R 5368146 5` UTR Cerk - chr3R_15_5365001 chr3R_5365001 RAL-765 1072 chr3R 5445967 5445994 chr3R 5452427 5452454 Burdock 9 6460 1.5 3.5 2.5 2.6 6487 chr3R 5445967 intron CG14669 + chr3R 5449210 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_9_5445001 chr3R_5445001 RAL-765 1073 chr3R 5453326 5453336 chr3R 5453437 5453446 5 112 4.0 1.5 2.8 1.3 120 chr3R 5453326 intron CG14669 + chr3R 5453386 intron CG14669 + chr3R 5453446 intron CG14669 + chr3R_5_5450001 chr3R_5450001 RAL-765 1074 chr3R 5626449 5626454 chr3R 5626732 5626755 4 296 5.5 6.0 5.8 0.6 306 chr3R 5626449 intergenic not near genes chr3R 5626602 intergenic not near genes chr3R 5626755 intergenic not near genes chr3R_4_5625001 chr3R_5625001 RAL-765 1075 chr3R 5726102 5726124 chr3R 5726264 5726286 10 162 1.5 2.0 1.8 3.6 184 chr3R 5726102 intergenic not near genes chr3R 5726194 intergenic not near genes chr3R 5726286 intergenic not near genes chr3R_10_5725001 chr3R_5725001 RAL-765 1076 chr3R 5746015 5746039 chr3R 5746256 5746278 pogo 4 240 3.5 4.5 4.0 0.8 263 chr3R 5746015 3` UTR Madm + chr3R 5746146 3` UTR Madm + chr3R 5746278 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-765 1077 chr3R 5747011 5747043 chr3R 5753202 5753234 diver 8 6191 2.0 1.0 1.5 3.2 6223 chr3R 5747011 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753234 intergenic CG2091 - chr3R_8_5750001 chr3R_5750001 RAL-765 1078 chr3R 5809120 5809143 chr3R 5809361 5809384 pogo 7 241 3.5 2.5 3.0 1.8 264 chr3R 5809120 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809384 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-765 1079 chr3R 5822378 5822408 chr3R 5823544 5823575 1360 6 1167 4.0 5.0 4.5 1.1 1197 chr3R 5822378 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-765 1080 chr3R 5927563 5927590 chr3R 5927801 5927830 pogo 5 240 2.5 2.0 2.2 1.6 267 chr3R 5927563 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-765 1081 chr3R 6015971 6015988 chr3R 6024451 6024462 Tirant 8 8479 1.5 2.0 1.8 2.9 8491 chr3R 6015971 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024462 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-765 1082 chr3R 6076536 6076544 chr3R 6076638 6076646 5 102 2.5 2.5 2.5 1.4 110 chr3R 6076536 intergenic Or83c - chr3R 6076591 intergenic Or83c - chr3R 6076646 intergenic Or83c - chr3R_5_6075001 chr3R_6075001 RAL-765 1083 chr3R 6121177 6121187 chr3R 6121395 6121405 BS 4 217 0.0 2.0 1.0 2.0 228 chr3R 6121177 intergenic not near genes chr3R 6121291 intergenic not near genes chr3R 6121405 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-765 1084 chr3R 6127723 6127753 chr3R 6127807 6127837 11 84 2.5 1.5 2.0 3.7 114 chr3R 6127723 3` UTR CR43487 - chr3R 6127780 3` UTR CR43487 - chr3R 6127837 3` UTR CR43487 - chr3R_11_6125001 chr3R_6125001 RAL-765 1085 chr3R 6158520 6158540 chr3R 6167103 6167120 Tirant 4 8580 3.5 6.5 5.0 0.7 8600 chr3R 6158520 intergenic not near genes chr3R 6162820 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-765 1086 chr3R 6175175 6175186 chr3R 6182447 6182458 HMS-Beagle2 5 7272 6.0 4.0 5.0 0.8 7283 chr3R 6175175 intergenic Osi1 + chr3R 6178816 intron CR45194 + chr3R 6182458 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-765 1087 chr3R 6191173 6191200 chr3R 6191253 6191280 4 80 2.5 3.0 2.8 1.1 107 chr3R 6191173 intron NPFR + chr3R 6191226 intron NPFR + chr3R 6191280 intron NPFR + chr3R_4_6190001 chr3R_6190001 RAL-765 1088 chr3R 6201773 6201784 chr3R 6201909 6201920 5 136 2.5 5.5 4.0 1.0 147 chr3R 6201773 intron Osi24 + chr3R 6201846 intron Osi24 + chr3R 6201920 intron Osi24 + chr3R_5_6200001 chr3R_6200001 RAL-765 1089 chr3R 6206281 6206317 chr3R 6206498 6206534 BS 18 216 6.0 5.5 5.8 2.6 253 chr3R 6206281 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206534 intron Osi24 + chr3R_18_6205001 chr3R_6205001 RAL-765 1090 chr3R 6231977 6232003 chr3R 6232278 6232304 12 301 4.5 6.5 5.5 1.8 327 chr3R 6231977 intergenic not near genes chr3R 6232140 intergenic not near genes chr3R 6232304 intergenic not near genes chr3R_12_6230001 chr3R_6230001 RAL-765 1091 chr3R 6308867 6308878 chr3R 6315493 6315517 4 6629 23.5 34.5 29.0 0.1 6650 chr3R 6308867 exon CG31556 - chr3R 6312192 intron Osi17 + chr3R 6315517 5` UTR Osi17 + chr3R_4_6310001 chr3R_6310001 RAL-765 1092 chr3R 6334777 6334811 chr3R 6334875 6334903 5 96 1.0 0.0 0.5 3.3 126 chr3R 6334777 intergenic not near genes chr3R 6334840 intergenic not near genes chr3R 6334903 intergenic Osi19 + chr3R_5_6330001 chr3R_6330001 RAL-765 1093 chr3R 6463569 6463595 chr3R 6463687 6463713 5 119 0.5 1.5 1.0 2.5 144 chr3R 6463569 intergenic not near genes chr3R 6463641 intergenic not near genes chr3R 6463713 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-765 1094 chr3R 6504091 6504115 chr3R 6504179 6504203 10 88 1.0 2.5 1.8 3.6 112 chr3R 6504091 intergenic not near genes chr3R 6504147 intergenic not near genes chr3R 6504203 intergenic not near genes chr3R_10_6500001 chr3R_6500001 RAL-765 1095 chr3R 6510027 6510050 chr3R 6515108 6515130 jockey 4 5081 2.0 2.0 2.0 1.3 5103 chr3R 6510027 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515130 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-765 1096 chr3R 6523970 6523991 chr3R 6524092 6524108 11 121 1.0 1.5 1.2 5.0 138 chr3R 6523970 intergenic not near genes chr3R 6524039 intergenic not near genes chr3R 6524108 intergenic not near genes chr3R_11_6520001 chr3R_6520001 RAL-765 1097 chr3R 6547946 6547958 chr3R 6548025 6548037 4 79 11.5 5.0 8.2 0.4 91 chr3R 6547946 intron dpr11 - chr3R 6547992 intron dpr11 - chr3R 6548037 intron dpr11 - chr3R_4_6545001 chr3R_6545001 RAL-765 1098 chr3R 6557887 6557917 chr3R 6558058 6558062 6 166 3.0 3.5 3.2 1.4 175 chr3R 6557887 intron dpr11 - chr3R 6557974 intron dpr11 - chr3R 6558062 intron dpr11 - chr3R_6_6555001 chr3R_6555001 RAL-765 1099 chr3R 6655771 6655795 chr3R 6656043 6656067 9 272 5.0 2.0 3.5 2.0 296 chr3R 6655771 exon Taf1 + chr3R 6655919 3` UTR Taf1 + chr3R 6656067 intergenic Taf1 +,CG1307 - chr3R_9_6655001 chr3R_6655001 RAL-765 1100 chr3R 6737499 6737529 chr3R 6739286 6739306 Doc 9 1783 4.0 3.5 3.8 1.9 1807 chr3R 6737499 intron pb - chr3R 6738402 intron pb - chr3R 6739306 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-765 1101 chr3R 6862230 6862251 chr3R 6862317 6862338 7 87 4.0 3.0 3.5 1.6 108 chr3R 6862230 intergenic not near genes chr3R 6862284 intergenic not near genes chr3R 6862338 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-765 1102 chr3R 6914868 6914891 chr3R 6914950 6914973 11 81 2.0 3.5 2.8 2.9 105 chr3R 6914868 intron Antp - chr3R 6914920 intron Antp - chr3R 6914973 intron Antp - chr3R_11_6910001 chr3R_6910001 RAL-765 1103 chr3R 6961177 6961193 chr3R 6961256 6961272 5 79 1.5 4.5 3.0 1.2 95 chr3R 6961177 intron Antp - chr3R 6961224 intron Antp - chr3R 6961272 intron Antp - chr3R_5_6960001 chr3R_6960001 RAL-765 1104 chr3R 7103287 7103313 chr3R 7103361 7103389 9 75 2.0 1.0 1.5 3.6 102 chr3R 7103287 intron Alh - chr3R 7103338 intron Alh - chr3R 7103389 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-765 1105 chr3R 7126507 7126533 chr3R 7126602 7126628 6 95 0.0 2.5 1.2 2.7 121 chr3R 7126507 3` UTR CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126628 3` UTR CG10068 - chr3R_6_7125001 chr3R_7125001 RAL-765 1106 chr3R 7217462 7217487 chr3R 7217683 7217708 4 221 1.0 2.5 1.8 1.4 246 chr3R 7217462 intergenic CG14605 -,CG14606 - chr3R 7217585 intergenic CG14605 - chr3R 7217708 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-765 1107 chr3R 7252408 7252424 chr3R 7252495 7252511 5 87 2.5 2.0 2.2 1.6 103 chr3R 7252408 3` UTR Gld - chr3R 7252460 3` UTR Gld - chr3R 7252511 3` UTR Gld - chr3R_5_7250001 chr3R_7250001 RAL-765 1108 chr3R 7304848 7304855 chr3R 7304910 7304942 5 79 3.5 3.5 3.5 1.1 94 chr3R 7304848 intron,exon rn -,CG42544 + chr3R 7304895 intron,exon rn -,CG42544 + chr3R 7304942 intron,exon rn -,CG42544 + chr3R_5_7300001 chr3R_7300001 RAL-765 1109 chr3R 7344902 7344928 chr3R 7344985 7345009 5 83 1.5 2.5 2.0 1.7 107 chr3R 7344902 intergenic CG31496 + chr3R 7344956 intergenic CG31496 + chr3R 7345009 intergenic CG31496 + chr3R_5_7340001 chr3R_7340001 RAL-765 1110 chr3R 7401743 7401766 chr3R 7401849 7401857 4 102 2.5 3.5 3.0 1.0 114 chr3R 7401743 intergenic not near genes chr3R 7401800 intergenic not near genes chr3R 7401857 intergenic not near genes chr3R_4_7400001 chr3R_7400001 RAL-765 1111 chr3R 7487005 7487027 chr3R 7487082 7487105 5 78 2.5 5.0 3.8 1.0 100 chr3R 7487005 exon alpha-Est10 - chr3R 7487055 exon alpha-Est10 - chr3R 7487105 exon alpha-Est10 - chr3R_5_7485001 chr3R_7485001 RAL-765 1112 chr3R 7655006 7655038 chr3R 7655088 7655120 7 80 1.5 0.5 1.0 3.5 114 chr3R 7655006 intergenic not near genes chr3R 7655063 intergenic not near genes chr3R 7655120 intergenic not near genes chr3R_7_7655001 chr3R_7655001 RAL-765 1113 chr3R 7677914 7677946 chr3R 7678027 7678059 5 113 0.5 1.0 0.8 2.8 145 chr3R 7677914 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678059 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-765 1114 chr3R 7680850 7680859 chr3R 7681480 7681490 4 631 2.5 0.0 1.2 1.8 640 chr3R 7680850 intron Nlg1 + chr3R 7681170 intron Nlg1 + chr3R 7681490 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-765 1115 chr3R 7680866 7680873 chr3R 7681474 7681504 5 625 1.0 0.0 0.5 3.3 638 chr3R 7680866 intron Nlg1 + chr3R 7681185 intron Nlg1 + chr3R 7681504 intron Nlg1 + chr3R_5_7680001 chr3R_7680001 RAL-765 1116 chr3R 7694575 7694590 chr3R 7713636 7713651 invader3 4 19061 4.0 0.5 2.2 1.2 19076 chr3R 7694575 3` UTR Nlg1 + chr3R 7704113 intergenic not near genes chr3R 7713651 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-765 1117 chr3R 7729464 7729494 chr3R 7737402 7737432 Stalker2 8 7938 2.0 2.0 2.0 2.7 7968 chr3R 7729464 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737432 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-765 1118 chr3R 7814037 7814058 chr3R 7814196 7814218 7 160 3.5 0.5 2.0 2.3 181 chr3R 7814037 intergenic CG34384 + chr3R 7814128 intergenic CG34384 + chr3R 7814218 intergenic CG34384 + chr3R_7_7810001 chr3R_7810001 RAL-765 1119 chr3R 7956633 7956650 chr3R 7956726 7956743 4 93 4.0 1.5 2.8 1.1 110 chr3R 7956633 intron dsx - chr3R 7956688 intron dsx - chr3R 7956743 intron dsx - chr3R_4_7955001 chr3R_7955001 RAL-765 1120 chr3R 7987189 7987212 chr3R 7987278 7987301 4 89 1.5 1.5 1.5 1.6 112 chr3R 7987189 intron CG2781 - chr3R 7987245 intron CG2781 - chr3R 7987301 intron CG2781 - chr3R_4_7985001 chr3R_7985001 RAL-765 1121 chr3R 8090567 8090571 chr3R 8094044 8094048 297 6 3477 3.0 7.5 5.2 1.0 3481 chr3R 8090567 intergenic CR44330 + chr3R 8092308 intergenic not near genes chr3R 8094048 intergenic CG7900 + chr3R_6_8090001 chr3R_8090001 RAL-765 1122 chr3R 8094407 8094437 chr3R 8099711 8099742 Transpac 7 5305 1.5 2.0 1.8 2.5 5335 chr3R 8094407 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099742 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-765 1123 chr3R 8101779 8101793 chr3R 8104863 8104877 G2 5 3084 2.0 1.0 1.5 2.0 3098 chr3R 8101779 exon CG7900 + chr3R 8103328 intron CG7900 + chr3R 8104877 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-765 1124 chr3R 8107397 8107412 chr3R 8107529 8107546 5 133 4.0 2.0 3.0 1.2 149 chr3R 8107397 intron puc + chr3R 8107472 intron puc + chr3R 8107546 intron puc + chr3R_5_8105001 chr3R_8105001 RAL-765 1125 chr3R 8207553 8207588 chr3R 8208398 8208433 F-element 7 845 1.0 2.5 1.8 2.5 880 chr3R 8207553 intergenic not near genes chr3R 8207993 intergenic not near genes chr3R 8208433 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-765 1126 chr3R 8339241 8339247 chr3R 21907534 21907536 23 13568291 17.5 13.0 15.2 1.4 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_23_15120001 chr3R_15120001 RAL-765 1127 chr3R 8403015 8403038 chr3R 8412181 8412204 roo 15 9166 4.5 6.5 5.5 2.3 9189 chr3R 8403015 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-765 1128 chr3R 8541345 8541367 chr3R 8541426 8541448 11 80 3.5 4.5 4.0 2.2 103 chr3R 8541345 intergenic not near genes chr3R 8541396 intergenic not near genes chr3R 8541448 intergenic not near genes chr3R_11_8540001 chr3R_8540001 RAL-765 1129 chr3R 8570487 8570511 chr3R 8575122 8575147 HMS-Beagle 4 4634 1.5 5.0 3.2 1.0 4660 chr3R 8570487 intergenic not near genes chr3R 8572817 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-765 1130 chr3R 8575930 8575957 chr3R 8576011 8576039 10 82 2.5 0.5 1.5 4.0 109 chr3R 8575930 intergenic not near genes chr3R 8575984 intergenic not near genes chr3R 8576039 intergenic not near genes chr3R_10_8575001 chr3R_8575001 RAL-765 1131 chr3R 8601772 8601782 chr3R 8610925 8610935 roo 5 9153 7.0 2.0 4.5 0.9 9163 chr3R 8601772 intron 5-HT2B + chr3R 8606354 intron 5-HT2B + chr3R 8610935 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-765 1132 chr3R 8601787 8601795 chr3R 8610919 8610948 roo 5 9145 5.5 1.5 3.5 1.1 9161 chr3R 8601787 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610948 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-765 1133 chr3R 8685296 8685306 chr3R 8685396 8685406 4 100 0.5 1.5 1.0 2.0 110 chr3R 8685296 intron CR44937 - chr3R 8685351 intron CR44937 - chr3R 8685406 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-765 1134 chr3R 8707370 8707383 chr3R 8709810 8709823 jockey 5 2441 5.0 3.0 4.0 1.0 2453 chr3R 8707370 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-765 1135 chr3R 8809070 8809101 chr3R 8809162 8809192 7 90 1.0 2.5 1.8 2.5 122 chr3R 8809070 3` UTR CG9837 - chr3R 8809131 exon CG9837 - chr3R 8809192 exon CG9837 - chr3R_7_8805001 chr3R_8805001 RAL-765 1136 chr3R 8917888 8917910 chr3R 8917968 8917990 6 80 1.5 0.0 0.8 3.3 102 chr3R 8917888 intron pyd - chr3R 8917939 intron pyd - chr3R 8917990 intron pyd - chr3R_6_8915001 chr3R_8915001 RAL-765 1137 chr3R 8974634 8974657 chr3R 8974715 8974738 4 80 1.0 1.0 1.0 2.0 104 chr3R 8974634 intergenic not near genes chr3R 8974686 intergenic not near genes chr3R 8974738 intergenic not near genes chr3R_4_8970001 chr3R_8970001 RAL-765 1138 chr3R 9069499 9069520 chr3R 9069578 9069599 5 79 0.5 4.5 2.5 1.4 100 chr3R 9069499 3` UTR pum - chr3R 9069549 3` UTR pum - chr3R 9069599 3` UTR pum - chr3R_5_9065001 chr3R_9065001 RAL-765 1139 chr3R 9101858 9101872 chr3R 9101956 9101970 4 98 2.0 1.5 1.8 1.4 112 chr3R 9101858 intron pum - chr3R 9101914 intron pum - chr3R 9101970 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-765 1140 chr3R 9107467 9107496 chr3R 9107565 9107600 8 103 1.0 1.0 1.0 4.0 133 chr3R 9107467 intron pum - chr3R 9107534 intron pum - chr3R 9107600 intron pum - chr3R_8_9105001 chr3R_9105001 RAL-765 1141 chr3R 9234107 9234134 chr3R 9234235 9234262 6 127 5.5 0.5 3.0 1.5 155 chr3R 9234107 5` UTR pum - chr3R 9234184 5` UTR pum - chr3R 9234262 5` UTR pum - chr3R_6_9230001 chr3R_9230001 RAL-765 1142 chr3R 9251431 9251462 chr3R 9251510 9251542 5 80 2.0 2.0 2.0 1.7 111 chr3R 9251431 3` UTR CG8420 + chr3R 9251486 intergenic CG8420 +,St2 + chr3R 9251542 intergenic CG8420 +,St2 + chr3R_5_9250001 chr3R_9250001 RAL-765 1143 chr3R 9289178 9289189 chr3R 9289426 9289454 6 262 2.5 1.5 2.0 2.0 276 chr3R 9289178 intergenic not near genes chr3R 9289316 intergenic not near genes chr3R 9289454 intergenic not near genes chr3R_6_9285001 chr3R_9285001 RAL-765 1144 chr3R 9313329 9313337 chr3R 9313416 9313424 4 87 0.5 3.0 1.8 1.4 95 chr3R 9313329 intron CG8861 - chr3R 9313376 intron CG8861 - chr3R 9313424 intron CG8861 - chr3R_4_9310001 chr3R_9310001 RAL-765 1145 chr3R 9338353 9338382 chr3R 9338678 9338709 4 326 0.0 2.0 1.0 2.0 356 chr3R 9338353 3` UTR CR43301 - chr3R 9338531 3` UTR CR43301 - chr3R 9338709 intron CR43301 - chr3R_4_9335001 chr3R_9335001 RAL-765 1146 chr3R 9435659 9435662 chr3R 24455702 24455705 4 15020043 36.0 5.0 20.5 0.2 15020046 chr3R 9435659 intron ps + chr3R 16945682 intron Abd-B - chr3R 24455705 intron nAChRalpha1 - chr3R_4_16945001 chr3R_16945001 RAL-765 1147 chr3R 9599821 9599839 chr3R 9599995 9600012 6 173 0.5 1.0 0.8 3.3 191 chr3R 9599821 intron CG8312 + chr3R 9599916 intron CG8312 + chr3R 9600012 intron CG8312 + chr3R_6_9595001 chr3R_9595001 RAL-765 1148 chr3R 9608662 9608685 chr3R 9608928 9608950 7 265 3.0 1.5 2.2 2.2 288 chr3R 9608662 intron CG8312 + chr3R 9608806 intron CG8312 + chr3R 9608950 intron CG8312 + chr3R_7_9605001 chr3R_9605001 RAL-765 1149 chr3R 9625959 9625969 chr3R 9626152 9626162 7 193 2.5 1.5 2.0 2.3 203 chr3R 9625959 exon CG9427 - chr3R 9626060 intron CG9427 - chr3R 9626162 intron CG9427 - chr3R_7_9625001 chr3R_9625001 RAL-765 1150 chr3R 9699972 9700002 chr3R 9700061 9700091 1360 8 88 2.0 2.0 2.0 2.7 119 chr3R 9699972 intron Unc-115a - chr3R 9700032 intron Unc-115a - chr3R 9700091 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-765 1151 chr3R 9829411 9829438 chr3R 9829491 9829523 4 84 4.5 1.5 3.0 1.0 112 chr3R 9829411 intron Teh1 - chr3R 9829467 intron Teh1 - chr3R 9829523 intron Teh1 - chr3R_4_9825001 chr3R_9825001 RAL-765 1152 chr3R 9836874 9836896 chr3R 9836956 9836984 7 85 4.5 2.5 3.5 1.6 110 chr3R 9836874 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9836984 intron Teh1 - chr3R_7_9835001 chr3R_9835001 RAL-765 1153 chr3R 9918414 9918438 chr3R 9918511 9918534 6 96 1.0 3.5 2.2 1.9 120 chr3R 9918414 intron Glut4EF + chr3R 9918474 intron Glut4EF + chr3R 9918534 intron Glut4EF + chr3R_6_9915001 chr3R_9915001 RAL-765 1154 chr3R 10041696 10041712 chr3R 10041910 10041927 5 215 3.0 3.0 3.0 1.2 231 chr3R 10041696 intron Mical - chr3R 10041812 intron Mical - chr3R 10041927 intron Mical - chr3R_5_10040001 chr3R_10040001 RAL-765 1155 chr3R 10231783 10231813 chr3R 10237360 10237387 mdg3 8 5577 2.0 2.0 2.0 2.7 5604 chr3R 10231783 intron CG42795 + chr3R 10234585 intron CG42795 + chr3R 10237387 intron CG42795 + chr3R_8_10230001 chr3R_10230001 RAL-765 1156 chr3R 10306960 10306985 chr3R 10312220 10312244 11 5259 41.5 10.5 26.0 0.4 5284 chr3R 10306960 exon CG43143 + chr3R 10309602 exon CG6293 - chr3R 10312244 3` UTR Bruce - chr3R_11_10305001 chr3R_10305001 RAL-765 1157 chr3R 10367647 10367665 chr3R 10367840 10367858 5 192 2.0 5.5 3.8 1.0 211 chr3R 10367647 intron Rfx - chr3R 10367752 intron Rfx - chr3R 10367858 intron Rfx - chr3R_5_10365001 chr3R_10365001 RAL-765 1158 chr3R 10417476 10417496 chr3R 10417810 10417831 8 334 4.0 1.0 2.5 2.3 355 chr3R 10417476 intergenic not near genes chr3R 10417654 intergenic not near genes chr3R 10417831 intergenic not near genes chr3R_8_10415001 chr3R_10415001 RAL-765 1159 chr3R 10553832 10553868 chr3R 10553921 10553956 11 88 2.0 3.5 2.8 2.9 124 chr3R 10553832 intron hth - chr3R 10553894 intron hth - chr3R 10553956 intron hth - chr3R_11_10550001 chr3R_10550001 RAL-765 1160 chr3R 10641590 10641618 chr3R 10641670 10641698 5 79 0.5 1.5 1.0 2.5 108 chr3R 10641590 5` UTR CR44018 + chr3R 10641644 5` UTR CR44018 + chr3R 10641698 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-765 1161 chr3R 10651824 10651844 chr3R 10651923 10651943 4 99 1.5 2.5 2.0 1.3 119 chr3R 10651824 intergenic not near genes chr3R 10651884 intergenic not near genes chr3R 10651943 intergenic not near genes chr3R_4_10650001 chr3R_10650001 RAL-765 1162 chr3R 10683563 10683576 chr3R 10683676 10683689 4 113 0.0 3.0 1.5 1.6 126 chr3R 10683563 intron CR44230 + chr3R 10683626 intron CR44230 + chr3R 10683689 5` UTR CR44230 + chr3R_4_10680001 chr3R_10680001 RAL-765 1163 chr3R 10732841 10732875 chr3R 10732926 10732960 4 80 2.5 4.0 3.2 1.0 119 chr3R 10732841 intergenic not near genes chr3R 10732900 intergenic not near genes chr3R 10732960 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-765 1164 chr3R 10752726 10752752 chr3R 10752811 10752837 5 84 3.0 3.5 3.2 1.2 111 chr3R 10752726 intergenic not near genes chr3R 10752782 intergenic not near genes chr3R 10752837 intergenic CG14691 - chr3R_5_10750001 chr3R_10750001 RAL-765 1165 chr3R 10804180 10804207 chr3R 10811711 10811737 17.6 4 7531 1.0 1.5 1.2 1.8 7557 chr3R 10804180 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-765 1166 chr3R 10904910 10904933 chr3R 10905114 10905137 6 204 1.5 0.5 1.0 3.0 227 chr3R 10904910 intergenic not near genes chr3R 10905024 intergenic not near genes chr3R 10905137 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-765 1167 chr3R 10919687 10919710 chr3R 10919765 10919788 6 77 2.0 2.5 2.2 1.9 101 chr3R 10919687 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919788 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-765 1168 chr3R 11085459 11085485 chr3R 11085536 11085560 8 75 0.5 0.5 0.5 5.3 101 chr3R 11085459 3` UTR CR44940 - chr3R 11085510 intergenic CR44940 - chr3R 11085560 intergenic CR44940 - chr3R_8_11085001 chr3R_11085001 RAL-765 1169 chr3R 11102324 11102354 chr3R 11102404 11102424 6 78 2.5 1.5 2.0 2.0 100 chr3R 11102324 intergenic not near genes chr3R 11102374 intergenic not near genes chr3R 11102424 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-765 1170 chr3R 11261229 11261249 chr3R 11261323 11261345 11 96 2.5 0.5 1.5 4.4 116 chr3R 11261229 intergenic not near genes chr3R 11261287 intergenic not near genes chr3R 11261345 intergenic not near genes chr3R_11_11260001 chr3R_11260001 RAL-765 1171 chr3R 11269449 11269478 chr3R 11269574 11269603 5 125 0.0 1.0 0.5 3.3 154 chr3R 11269449 3` UTR CR31386 - chr3R 11269526 3` UTR CR31386 - chr3R 11269603 3` UTR CR31386 - chr3R_5_11265001 chr3R_11265001 RAL-765 1172 chr3R 11379233 11379266 chr3R 11388388 11388421 roo 10 9154 3.5 3.0 3.2 2.4 9188 chr3R 11379233 intron pros + chr3R 11383827 intron pros + chr3R 11388421 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-765 1173 chr3R 11406300 11406320 chr3R 11406377 11406397 4 77 2.0 3.5 2.8 1.1 97 chr3R 11406300 3` UTR pros + chr3R 11406348 3` UTR pros + chr3R 11406397 3` UTR pros + chr3R_4_11405001 chr3R_11405001 RAL-765 1174 chr3R 11483452 11483478 chr3R 11483528 11483555 7 77 2.5 3.0 2.8 1.8 103 chr3R 11483452 intergenic not near genes chr3R 11483504 intergenic not near genes chr3R 11483555 intergenic not near genes chr3R_7_11480001 chr3R_11480001 RAL-765 1175 chr3R 11485084 11485117 chr3R 11485176 11485209 10 89 2.5 4.5 3.5 2.2 125 chr3R 11485084 intergenic not near genes chr3R 11485146 intergenic not near genes chr3R 11485209 intergenic not near genes chr3R_10_11485001 chr3R_11485001 RAL-765 1176 chr3R 11518816 11518847 chr3R 11518907 11518938 12 91 2.0 4.5 3.2 2.9 122 chr3R 11518816 intergenic not near genes chr3R 11518877 intergenic not near genes chr3R 11518938 intergenic not near genes chr3R_12_11515001 chr3R_11515001 RAL-765 1177 chr3R 11530660 11530685 chr3R 11530738 11530763 5 78 3.0 0.5 1.8 1.8 103 chr3R 11530660 intergenic not near genes chr3R 11530712 intergenic not near genes chr3R 11530763 intergenic not near genes chr3R_5_11530001 chr3R_11530001 RAL-765 1178 chr3R 11548909 11548920 chr3R 11548986 11548996 5 77 1.0 1.0 1.0 2.5 87 chr3R 11548909 intergenic not near genes chr3R 11548952 intergenic not near genes chr3R 11548996 intergenic not near genes chr3R_5_11545001 chr3R_11545001 RAL-765 1179 chr3R 11599508 11599529 chr3R 11599588 11599609 6 80 3.0 3.0 3.0 1.5 101 chr3R 11599508 intron Jupiter - chr3R 11599558 intron Jupiter - chr3R 11599609 intron Jupiter - chr3R_6_11595001 chr3R_11595001 RAL-765 1180 chr3R 11637568 11637603 chr3R 11637657 11637683 8 87 4.5 3.0 3.8 1.7 115 chr3R 11637568 5` UTR,5` UTR Csk -,CR44137 + chr3R 11637626 intron,5` UTR Csk -,CR44137 + chr3R 11637683 intron,5` UTR Csk -,CR44137 + chr3R_8_11635001 chr3R_11635001 RAL-765 1181 chr3R 11670985 11671018 chr3R 11671063 11671096 7 78 3.0 2.0 2.5 2.0 111 chr3R 11670985 intron CG42327 + chr3R 11671040 intron CG42327 + chr3R 11671096 intron CG42327 + chr3R_7_11670001 chr3R_11670001 RAL-765 1182 chr3R 11708630 11708655 chr3R 11708838 11708863 8 208 4.0 2.0 3.0 2.0 233 chr3R 11708630 intergenic not near genes chr3R 11708746 intergenic not near genes chr3R 11708863 intergenic not near genes chr3R_8_11705001 chr3R_11705001 RAL-765 1183 chr3R 11841074 11841092 chr3R 11846265 11846283 BS 7 5191 4.5 3.5 4.0 1.4 5209 chr3R 11841074 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846283 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-765 1184 chr3R 11914375 11914399 chr3R 11914460 11914484 7 85 1.5 1.5 1.5 2.8 109 chr3R 11914375 intron Cad87A - chr3R 11914430 intron Cad87A - chr3R 11914484 intron Cad87A - chr3R_7_11910001 chr3R_11910001 RAL-765 1185 chr3R 12022885 12022908 chr3R 12025062 12025085 pogo 7 2177 1.0 1.5 1.2 3.2 2200 chr3R 12022885 intergenic not near genes chr3R 12023985 intergenic not near genes chr3R 12025085 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-765 1186 chr3R 12078206 12078218 chr3R 12078293 12078309 5 90 1.5 0.0 0.8 2.8 103 chr3R 12078206 intron CG14741 - chr3R 12078258 intron CG14741 - chr3R 12078309 intron CG14741 - chr3R_5_12075001 chr3R_12075001 RAL-765 1187 chr3R 12081999 12082026 chr3R 12082071 12082102 12 76 6.0 0.5 3.2 2.9 103 chr3R 12081999 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082102 intron CG14741 - chr3R_12_12080001 chr3R_12080001 RAL-765 1188 chr3R 12145994 12146009 chr3R 12146076 12146091 5 82 1.5 2.5 2.0 1.7 97 chr3R 12145994 intron dpr15 - chr3R 12146042 intron dpr15 - chr3R 12146091 intron dpr15 - chr3R_5_12145001 chr3R_12145001 RAL-765 1189 chr3R 12180041 12180069 chr3R 12180127 12180155 5 86 2.5 1.5 2.0 1.7 114 chr3R 12180041 intergenic not near genes chr3R 12180098 intergenic not near genes chr3R 12180155 intergenic not near genes chr3R_5_12180001 chr3R_12180001 RAL-765 1190 chr3R 12392890 12392901 chr3R 12392990 12393000 4 100 3.0 8.0 5.5 0.6 110 chr3R 12392890 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392945 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393000 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-765 1191 chr3R 12522814 12522844 chr3R 12522910 12522940 7 96 4.0 1.0 2.5 2.0 126 chr3R 12522814 intron Octbeta3R - chr3R 12522877 intron Octbeta3R - chr3R 12522940 intron Octbeta3R - chr3R_7_12520001 chr3R_12520001 RAL-765 1192 chr3R 12704139 12704164 chr3R 12704711 12704736 7 572 0.0 2.5 1.2 3.2 597 chr3R 12704139 3` UTR Past1 + chr3R 12704438 3` UTR Past1 + chr3R 12704736 3` UTR Past1 + chr3R_7_12700001 chr3R_12700001 RAL-765 1193 chr3R 12866487 12866519 chr3R 12866638 12866670 10 151 1.0 0.5 0.8 5.6 183 chr3R 12866487 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866670 intergenic not near genes chr3R_10_12865001 chr3R_12865001 RAL-765 1194 chr3R 12920153 12920182 chr3R 12925356 12925385 copia 7 5202 3.0 1.0 2.0 2.3 5232 chr3R 12920153 intron beat-Vb + chr3R 12922769 intron beat-Vb + chr3R 12925385 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-765 1195 chr3R 12947292 12947314 chr3R 12947451 12947475 5 161 3.0 3.0 3.0 1.2 183 chr3R 12947292 intergenic not near genes chr3R 12947384 intergenic not near genes chr3R 12947475 intergenic not near genes chr3R_5_12945001 chr3R_12945001 RAL-765 1196 chr3R 12972559 12972582 chr3R 12972698 12972721 4 139 2.0 1.5 1.8 1.4 162 chr3R 12972559 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_4_12970001 chr3R_12970001 RAL-765 1197 chr3R 13067840 13067869 chr3R 13067918 13067949 6 79 6.5 3.0 4.8 1.0 109 chr3R 13067840 intron sim + chr3R 13067894 intron sim + chr3R 13067949 intron sim + chr3R_6_13065001 chr3R_13065001 RAL-765 1198 chr3R 13143047 13143066 chr3R 13148623 13148623 mdg3 8 5573 3.0 3.0 3.0 2.0 5576 chr3R 13143047 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145835 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148623 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-765 1199 chr3R 13349008 13349033 chr3R 13349084 13349109 5 76 2.0 1.0 1.5 2.0 101 chr3R 13349008 intergenic not near genes chr3R 13349058 intergenic not near genes chr3R 13349109 intergenic not near genes chr3R_5_13345001 chr3R_13345001 RAL-765 1200 chr3R 13609561 13609575 chr3R 13609655 13609669 4 94 0.0 1.0 0.5 2.7 108 chr3R 13609561 intergenic CG9759 - chr3R 13609615 intergenic CG9759 - chr3R 13609669 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-765 1201 chr3R 13672946 13672975 chr3R 13673024 13673053 8 78 0.5 3.0 1.8 2.9 107 chr3R 13672946 intron Task6 - chr3R 13673000 intron Task6 - chr3R 13673053 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-765 1202 chr3R 13693028 13693028 chr3R 21907534 21907536 11 8214507 12.5 13.0 12.8 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-765 1203 chr3R 13714519 13714550 chr3R 13714658 13714689 6 139 1.0 0.5 0.8 3.3 170 chr3R 13714519 intergenic CR34044 - chr3R 13714604 intergenic CR34044 - chr3R 13714689 intergenic CR34044 - chr3R_6_13710001 chr3R_13710001 RAL-765 1204 chr3R 13863681 13863716 chr3R 13863769 13863804 7 88 1.5 3.0 2.2 2.2 123 chr3R 13863681 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-765 1205 chr3R 14049015 14049042 chr3R 14049095 14049122 5 79 0.0 1.0 0.5 3.3 107 chr3R 14049015 intergenic not near genes chr3R 14049068 intergenic not near genes chr3R 14049122 intergenic not near genes chr3R_5_14045001 chr3R_14045001 RAL-765 1206 chr3R 14062841 14062877 chr3R 14062918 14062950 8 76 1.0 0.0 0.5 5.3 109 chr3R 14062841 intron foxo + chr3R 14062896 intron foxo + chr3R 14062950 intron foxo + chr3R_8_14060001 chr3R_14060001 RAL-765 1207 chr3R 14067142 14067149 chr3R 14067221 14067228 4 78 4.0 1.0 2.5 1.1 86 chr3R 14067142 exon foxo + chr3R 14067185 intron foxo + chr3R 14067228 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-765 1208 chr3R 14070135 14070146 chr3R 14070215 14070227 5 81 2.5 6.5 4.5 0.9 92 chr3R 14070135 intron foxo + chr3R 14070181 intron foxo + chr3R 14070227 intron foxo + chr3R_5_14070001 chr3R_14070001 RAL-765 1209 chr3R 14083398 14083434 chr3R 14083499 14083535 5 101 0.0 0.0 0.0 5.0 137 chr3R 14083398 intron foxo + chr3R 14083466 intron foxo + chr3R 14083535 intron foxo + chr3R_5_14080001 chr3R_14080001 RAL-765 1210 chr3R 14117443 14117466 chr3R 14117519 14117542 4 76 3.0 0.5 1.8 1.4 99 chr3R 14117443 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117542 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-765 1211 chr3R 14167777 14167812 chr3R 14167853 14167888 9 76 1.0 1.5 1.2 4.1 111 chr3R 14167777 3` UTR Dop1R1 - chr3R 14167832 3` UTR Dop1R1 - chr3R 14167888 3` UTR Dop1R1 - chr3R_9_14165001 chr3R_14165001 RAL-765 1212 chr3R 14246390 14246415 chr3R 14247886 14247911 jockey 5 1495 3.5 3.0 3.2 1.2 1521 chr3R 14246390 intergenic not near genes chr3R 14247150 intergenic not near genes chr3R 14247911 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-765 1213 chr3R 14253703 14253719 chr3R 14253782 14253798 7 79 1.5 2.0 1.8 2.5 95 chr3R 14253703 intron Aats-met - chr3R 14253750 intron Aats-met - chr3R 14253798 intron Aats-met - chr3R_7_14250001 chr3R_14250001 RAL-765 1214 chr3R 14417047 14417078 chr3R 14417225 14417257 8 177 2.0 2.0 2.0 2.7 210 chr3R 14417047 intron cv-c - chr3R 14417152 intron cv-c - chr3R 14417257 intron cv-c - chr3R_8_14415001 chr3R_14415001 RAL-765 1215 chr3R 14431203 14431223 chr3R 14431283 14431302 6 80 1.5 1.5 1.5 2.4 99 chr3R 14431203 intron cv-c - chr3R 14431252 intron cv-c - chr3R 14431302 intron cv-c - chr3R_6_14430001 chr3R_14430001 RAL-765 1216 chr3R 14433580 14433596 chr3R 14433657 14433673 4 76 2.5 3.5 3.0 1.0 93 chr3R 14433580 intron cv-c - chr3R 14433626 intron cv-c - chr3R 14433673 intron cv-c - chr3R_4_14430001 chr3R_14430001 RAL-765 1217 chr3R 14440730 14440750 chr3R 14440806 14440826 8 74 1.5 1.0 1.2 3.6 96 chr3R 14440730 intron cv-c - chr3R 14440778 intron cv-c - chr3R 14440826 intron cv-c - chr3R_8_14440001 chr3R_14440001 RAL-765 1218 chr3R 14526339 14526358 chr3R 14526519 14526538 7 180 4.5 3.0 3.8 1.5 199 chr3R 14526339 intron Pde6 - chr3R 14526438 intron Pde6 - chr3R 14526538 intron Pde6 - chr3R_7_14525001 chr3R_14525001 RAL-765 1219 chr3R 14704390 14704404 chr3R 14704467 14704481 4 77 1.5 1.5 1.5 1.6 91 chr3R 14704390 intron kibra - chr3R 14704436 intron kibra - chr3R 14704481 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-765 1220 chr3R 14795280 14795310 chr3R 14795360 14795390 5 79 0.5 2.0 1.2 2.3 110 chr3R 14795280 3` UTR jvl + chr3R 14795335 3` UTR jvl + chr3R 14795390 3` UTR jvl + chr3R_5_14795001 chr3R_14795001 RAL-765 1221 chr3R 15040863 15040882 chr3R 15040988 15041007 4 125 1.5 1.0 1.2 1.8 144 chr3R 15040863 intergenic not near genes chr3R 15040935 intergenic not near genes chr3R 15041007 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-765 1222 chr3R 15058219 15058246 chr3R 15058304 15058331 8 85 3.0 2.0 2.5 2.3 112 chr3R 15058219 intron dpr9 - chr3R 15058275 intron dpr9 - chr3R 15058331 intron dpr9 - chr3R_8_15055001 chr3R_15055001 RAL-765 1223 chr3R 15079809 15079836 chr3R 15080050 15080077 pogo 7 241 4.0 2.0 3.0 1.8 268 chr3R 15079809 3` UTR CG6966 - chr3R 15079943 3` UTR CG6966 - chr3R 15080077 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-765 1224 chr3R 15114916 15114946 chr3R 15114993 15115022 10 76 1.5 3.0 2.2 3.1 106 chr3R 15114916 intron CG42788 - chr3R 15114969 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_10_15110001 chr3R_15110001 RAL-765 1225 chr3R 15132058 15132086 chr3R 15135117 15135146 Juan 7 3060 6.5 5.5 6.0 1.0 3088 chr3R 15132058 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135146 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-765 1226 chr3R 15286984 15286987 chr3R 21907534 21907536 11 6620549 11.5 13.0 12.2 0.8 6620552 chr3R 15286984 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_11_18595001 chr3R_18595001 RAL-765 1227 chr3R 15286988 15286988 chr3R 21907534 21907536 5 6620547 12.0 13.0 12.5 0.4 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-765 1228 chr3R 15406133 15406169 chr3R 15406214 15406247 9 79 1.0 0.5 0.8 5.0 114 chr3R 15406133 intron CG6125 - chr3R 15406190 intron CG6125 - chr3R 15406247 intron CG6125 - chr3R_9_15405001 chr3R_15405001 RAL-765 1229 chr3R 15407883 15407900 chr3R 15408099 15408116 4 216 1.0 1.0 1.0 2.0 233 chr3R 15407883 intergenic not near genes chr3R 15408000 intergenic not near genes chr3R 15408116 intergenic not near genes chr3R_4_15405001 chr3R_15405001 RAL-765 1230 chr3R 15416251 15416281 chr3R 15416330 15416359 15 79 3.0 4.0 3.5 3.3 108 chr3R 15416251 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_15_15415001 chr3R_15415001 RAL-765 1231 chr3R 15429431 15429458 chr3R 15429569 15429597 8 138 3.5 3.5 3.5 1.8 166 chr3R 15429431 intron CG6118 - chr3R 15429514 intron CG6118 - chr3R 15429597 intron CG6118 - chr3R_8_15425001 chr3R_15425001 RAL-765 1232 chr3R 15470993 15471015 chr3R 15471064 15471093 5 75 1.5 2.0 1.8 1.8 100 chr3R 15470993 intron AdamTS-A - chr3R 15471043 intron AdamTS-A - chr3R 15471093 intron AdamTS-A - chr3R_5_15470001 chr3R_15470001 RAL-765 1233 chr3R 15571246 15571495 chr3R 15571353 15571586 15 100 1.5 2.5 2.0 5.0 340 chr3R 15571246 intergenic not near genes chr3R 15571416 intergenic not near genes chr3R 15571586 intergenic not near genes chr3R_15_15570001 chr3R_15570001 RAL-765 1234 chr3R 15601176 15601186 chr3R 15608698 15608708 412 4 7522 3.5 2.5 3.0 1.0 7532 chr3R 15601176 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608708 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-765 1235 chr3R 15639340 15639352 chr3R 15639626 15639638 4 286 1.5 2.0 1.8 1.4 298 chr3R 15639340 intergenic not near genes chr3R 15639489 intergenic not near genes chr3R 15639638 intergenic not near genes chr3R_4_15635001 chr3R_15635001 RAL-765 1236 chr3R 15790141 15790157 chr3R 15790249 15790263 6 107 6.5 7.5 7.0 0.8 122 chr3R 15790141 exon c(3)G - chr3R 15790202 intron c(3)G - chr3R 15790263 exon c(3)G - chr3R_6_15790001 chr3R_15790001 RAL-765 1237 chr3R 15790158 15790282 chr3R 15790242 15790400 7 110 6.5 7.5 7.0 0.9 242 chr3R 15790158 exon c(3)G - chr3R 15790279 exon c(3)G - chr3R 15790400 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-765 1238 chr3R 15790382 15790386 chr3R 15790584 15790592 5 205 10.5 14.5 12.5 0.4 210 chr3R 15790382 exon c(3)G - chr3R 15790487 exon c(3)G - chr3R 15790592 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-765 1239 chr3R 15790843 15790874 chr3R 15790959 15790990 9 115 10.0 15.0 12.5 0.7 147 chr3R 15790843 exon c(3)G - chr3R 15790916 intron c(3)G - chr3R 15790990 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-765 1240 chr3R 15891667 15891687 chr3R 15892057 15892079 4 392 2.0 2.5 2.2 1.2 412 chr3R 15891667 intron CG14877 - chr3R 15891873 intron CG14877 - chr3R 15892079 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-765 1241 chr3R 16048864 16048882 chr3R 16048953 16048972 5 89 0.5 5.0 2.8 1.3 108 chr3R 16048864 intron ird5 - chr3R 16048918 intron ird5 - chr3R 16048972 intron ird5 - chr3R_5_16045001 chr3R_16045001 RAL-765 1242 chr3R 16073447 16073469 chr3R 16073551 16073573 4 104 2.5 0.0 1.2 1.8 126 chr3R 16073447 intron Mhcl - chr3R 16073510 intron Mhcl - chr3R 16073573 intron Mhcl - chr3R_4_16070001 chr3R_16070001 RAL-765 1243 chr3R 16159235 16159245 chr3R 16159323 16159333 5 87 9.5 4.5 7.0 0.6 98 chr3R 16159235 intron CG6006 + chr3R 16159284 intron CG6006 + chr3R 16159333 intron CG6006 + chr3R_5_16155001 chr3R_16155001 RAL-765 1244 chr3R 16189420 16189439 chr3R 16189823 16189842 invader4 7 402 2.0 0.0 1.0 3.5 422 chr3R 16189420 intron sra + chr3R 16189631 intron sra + chr3R 16189842 intron sra + chr3R_7_16185001 chr3R_16185001 RAL-765 1245 chr3R 16228248 16228272 chr3R 16228525 16228549 9 276 4.0 1.5 2.8 2.4 301 chr3R 16228248 intron tara + chr3R 16228398 intron tara + chr3R 16228549 intron tara + chr3R_9_16225001 chr3R_16225001 RAL-765 1246 chr3R 16241789 16241819 chr3R 16242052 16242081 8 263 2.0 0.5 1.2 3.6 292 chr3R 16241789 intron tara + chr3R 16241935 intron tara + chr3R 16242081 intron tara + chr3R_8_16240001 chr3R_16240001 RAL-765 1247 chr3R 16246524 16246556 chr3R 16246599 16246632 6 76 0.0 2.5 1.2 2.7 108 chr3R 16246524 intron tara + chr3R 16246578 intron tara + chr3R 16246632 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-765 1248 chr3R 16472580 16472599 chr3R 16472656 16472674 6 75 10.0 6.5 8.2 0.7 94 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472627 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-765 1249 chr3R 16756325 16756348 chr3R 16762516 16762538 diver 7 6191 1.0 1.0 1.0 3.5 6213 chr3R 16756325 intron bxd - chr3R 16759432 intron bxd - chr3R 16762538 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-765 1250 chr3R 17242665 17242685 chr3R 17242747 17242767 4 82 3.0 2.0 2.5 1.1 102 chr3R 17242665 intron beat-IIb - chr3R 17242716 intron beat-IIb - chr3R 17242767 intron beat-IIb - chr3R_4_17240001 chr3R_17240001 RAL-765 1251 chr3R 17294677 17294700 chr3R 17295104 17295128 BS 4 428 1.0 1.5 1.2 1.8 451 chr3R 17294677 intergenic not near genes chr3R 17294902 intergenic not near genes chr3R 17295128 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-765 1252 chr3R 17335159 17335184 chr3R 17335235 17335256 7 75 1.5 2.0 1.8 2.5 97 chr3R 17335159 intron beat-IIa - chr3R 17335208 intron beat-IIa - chr3R 17335256 intron beat-IIa - chr3R_7_17335001 chr3R_17335001 RAL-765 1253 chr3R 17355492 17355518 chr3R 17355570 17355596 6 76 1.5 2.0 1.8 2.1 104 chr3R 17355492 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355596 intron beat-IIa - chr3R_6_17355001 chr3R_17355001 RAL-765 1254 chr3R 17415964 17415998 chr3R 17416041 17416074 15 79 6.5 7.0 6.8 1.9 110 chr3R 17415964 exon CG5866 + chr3R 17416019 exon CG5866 + chr3R 17416074 exon CG5866 + chr3R_15_17415001 chr3R_17415001 RAL-765 1255 chr3R 17452558 17452578 chr3R 17452758 17452778 4 200 1.0 2.0 1.5 1.6 220 chr3R 17452558 intergenic not near genes chr3R 17452668 intergenic not near genes chr3R 17452778 intergenic not near genes chr3R_4_17450001 chr3R_17450001 RAL-765 1256 chr3R 17467610 17467622 chr3R 17467721 17467733 5 111 0.5 4.0 2.2 1.6 123 chr3R 17467610 intergenic not near genes chr3R 17467672 intergenic not near genes chr3R 17467733 intergenic not near genes chr3R_5_17465001 chr3R_17465001 RAL-765 1257 chr3R 17521569 17521580 chr3R 17521729 17521740 5 159 0.0 8.5 4.2 1.0 171 chr3R 17521569 intergenic not near genes chr3R 17521654 intergenic not near genes chr3R 17521740 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-765 1258 chr3R 17521582 17521590 chr3R 17521723 17521748 4 154 0.0 7.5 3.8 0.8 166 chr3R 17521582 intergenic not near genes chr3R 17521665 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-765 1259 chr3R 17562225 17562262 chr3R 17562396 17562433 10 171 3.0 4.0 3.5 2.2 208 chr3R 17562225 intron Hmx + chr3R 17562329 intron Hmx + chr3R 17562433 intron Hmx + chr3R_10_17560001 chr3R_17560001 RAL-765 1260 chr3R 17565610 17565629 chr3R 17565697 17565717 5 88 1.0 4.5 2.8 1.3 107 chr3R 17565610 intron Hmx + chr3R 17565664 intron Hmx + chr3R 17565717 intron Hmx + chr3R_5_17565001 chr3R_17565001 RAL-765 1261 chr3R 17569966 17569987 chr3R 17570045 17570066 10 79 0.0 4.5 2.2 3.1 100 chr3R 17569966 intergenic not near genes chr3R 17570016 intergenic not near genes chr3R 17570066 intergenic not near genes chr3R_10_17570001 chr3R_17570001 RAL-765 1262 chr3R 17638324 17638343 chr3R 17638810 17638829 roo 6 486 0.5 1.0 0.8 3.3 505 chr3R 17638324 intron CG43175 + chr3R 17638576 intron CG43175 + chr3R 17638829 intron,intron CG43175 +,CR45222 + chr3R_6_17635001 chr3R_17635001 RAL-765 1263 chr3R 17823213 17823234 chr3R 17823290 17823310 6 76 3.0 3.5 3.2 1.4 97 chr3R 17823213 intron tinc + chr3R 17823262 intron tinc + chr3R 17823310 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-765 1264 chr3R 17925857 17925888 chr3R 17927318 17927355 hobo 12 1466 4.5 7.0 5.8 1.8 1498 chr3R 17925857 intron cpo + chr3R 17926606 intron cpo + chr3R 17927355 intron cpo + chr3R_12_17925001 chr3R_17925001 RAL-765 1265 chr3R 18041758 18041774 chr3R 18041834 18041851 5 77 0.0 0.5 0.2 4.2 93 chr3R 18041758 intergenic not near genes chr3R 18041804 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-765 1266 chr3R 18061591 18061605 chr3R 18063159 18063172 F-element 4 1568 1.5 1.5 1.5 1.6 1581 chr3R 18061591 intergenic not near genes chr3R 18062382 intergenic not near genes chr3R 18063172 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-765 1267 chr3R 18143498 18143502 chr3R 18143585 18143588 4 87 0.0 0.0 0.0 4.0 90 chr3R 18143498 intergenic not near genes chr3R 18143543 intergenic not near genes chr3R 18143588 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-765 1268 chr3R 18215760 18215768 chr3R 18215929 18215937 4 169 1.0 1.0 1.0 2.0 177 chr3R 18215760 intergenic CG14314 + chr3R 18215848 intergenic CG14314 + chr3R 18215937 intergenic CG14314 + chr3R_4_18215001 chr3R_18215001 RAL-765 1269 chr3R 18331782 18331790 chr3R 18333276 18333284 hopper2 4 1494 7.5 1.5 4.5 0.7 1502 chr3R 18331782 3` UTR CG15803 - chr3R 18332533 intron CG15803 - chr3R 18333284 3` UTR CG15803 - chr3R_4_18330001 chr3R_18330001 RAL-765 1270 chr3R 18394473 18394504 chr3R 18394550 18394581 6 76 2.0 1.5 1.8 2.1 108 chr3R 18394473 intron Vha100-2 - chr3R 18394527 intron Vha100-2 - chr3R 18394581 intron Vha100-2 - chr3R_6_18390001 chr3R_18390001 RAL-765 1271 chr3R 18501593 18501629 chr3R 18501674 18501710 8 80 1.0 2.5 1.8 2.9 117 chr3R 18501593 intron fru - chr3R 18501652 intron fru - chr3R 18501710 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-765 1272 chr3R 18766785 18766803 chr3R 18766863 18766872 7 77 1.0 1.5 1.2 3.2 87 chr3R 18766785 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766872 intron CG7720 - chr3R_7_18765001 chr3R_18765001 RAL-765 1273 chr3R 18787488 18787528 chr3R 18787586 18787618 5 92 0.0 1.5 0.8 2.8 130 chr3R 18787488 intron CG7720 - chr3R 18787553 intron CG7720 - chr3R 18787618 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-765 1274 chr3R 18791514 18791525 chr3R 18791578 18791604 4 75 2.0 1.0 1.5 1.6 90 chr3R 18791514 intron CG7720 - chr3R 18791559 intron CG7720 - chr3R 18791604 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-765 1275 chr3R 18808478 18808508 chr3R 18808555 18808585 6 74 1.0 3.0 2.0 2.0 107 chr3R 18808478 intron CG18208 - chr3R 18808532 intron CG18208 - chr3R 18808585 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-765 1276 chr3R 18812074 18812106 chr3R 18812152 18812184 10 75 3.5 4.5 4.0 2.0 110 chr3R 18812074 intron CG18208 - chr3R 18812129 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-765 1277 chr3R 18839812 18839834 chr3R 18839896 18839913 6 83 1.5 2.5 2.0 2.0 101 chr3R 18839812 intron CG18208 - chr3R 18839862 intron CG18208 - chr3R 18839913 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-765 1278 chr3R 18856333 18856367 chr3R 18856623 18856657 7 290 2.0 2.0 2.0 2.3 324 chr3R 18856333 intergenic not near genes chr3R 18856495 intergenic not near genes chr3R 18856657 intergenic not near genes chr3R_7_18855001 chr3R_18855001 RAL-765 1279 chr3R 18944067 18944086 chr3R 18945087 18945100 7 1019 2.5 5.0 3.8 1.5 1033 chr3R 18944067 intron CG42613 + chr3R 18944584 intron CG42613 + chr3R 18945100 intron CG42613 + chr3R_7_18940001 chr3R_18940001 RAL-765 1280 chr3R 19013028 19013047 chr3R 19013112 19013131 6 84 4.0 5.5 4.8 1.0 103 chr3R 19013028 intron gukh + chr3R 19013080 intron gukh + chr3R 19013131 intron gukh + chr3R_6_19010001 chr3R_19010001 RAL-765 1281 chr3R 19140262 19140301 chr3R 19140710 19140749 13 448 3.0 2.0 2.5 3.7 487 chr3R 19140262 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140749 3` UTR Ppcs - chr3R_13_19140001 chr3R_19140001 RAL-765 1282 chr3R 19370789 19370820 chr3R 19370909 19370937 5 119 0.0 0.5 0.2 4.2 148 chr3R 19370789 intron Ino80 - chr3R 19370863 intron Ino80 - chr3R 19370937 intron Ino80 - chr3R_5_19370001 chr3R_19370001 RAL-765 1283 chr3R 19490447 19490468 chr3R 19490536 19490556 8 89 2.0 3.0 2.5 2.3 109 chr3R 19490447 intron,intron Dys +,CG15025 - chr3R 19490502 intron,intron Dys +,CG15025 - chr3R 19490556 intron,intron Dys +,CG15025 - chr3R_8_19490001 chr3R_19490001 RAL-765 1284 chr3R 19505940 19505964 chr3R 19506039 19506063 10 99 3.0 3.5 3.2 2.4 123 chr3R 19505940 intron Dys + chr3R 19506002 intron Dys + chr3R 19506063 intron Dys + chr3R_10_19505001 chr3R_19505001 RAL-765 1285 chr3R 19561837 19561856 chr3R 19561906 19561932 5 75 2.0 2.5 2.2 1.6 95 chr3R 19561837 intron Dys + chr3R 19561884 intron Dys + chr3R 19561932 intron Dys + chr3R_5_19560001 chr3R_19560001 RAL-765 1286 chr3R 19702321 19702350 chr3R 19702403 19702431 6 81 3.0 1.5 2.2 1.9 110 chr3R 19702321 intergenic not near genes chr3R 19702376 intergenic not near genes chr3R 19702431 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-765 1287 chr3R 19989845 19989881 chr3R 19989922 19989961 8 78 2.0 0.5 1.2 3.6 116 chr3R 19989845 intron Hs6st - chr3R 19989903 intron Hs6st - chr3R 19989961 intron Hs6st - chr3R_8_19985001 chr3R_19985001 RAL-765 1288 chr3R 20109547 20109570 chr3R 20114753 20114776 copia 4 5206 2.0 2.0 2.0 1.3 5229 chr3R 20109547 intergenic not near genes chr3R 20112162 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-765 1289 chr3R 20118019 20118215 chr3R 20118105 20118299 17 84 1.5 1.0 1.2 7.7 280 chr3R 20118019 intergenic not near genes chr3R 20118159 intergenic not near genes chr3R 20118299 intergenic not near genes chr3R_17_20115001 chr3R_20115001 RAL-765 1290 chr3R 20146322 20146347 chr3R 20146643 20146668 7 321 2.0 1.5 1.8 2.5 346 chr3R 20146322 intergenic not near genes chr3R 20146495 intergenic not near genes chr3R 20146668 intergenic not near genes chr3R_7_20145001 chr3R_20145001 RAL-765 1291 chr3R 20156693 20156723 chr3R 20165863 20165893 roo 8 9167 1.0 1.5 1.2 3.6 9200 chr3R 20156693 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_8_20160001 chr3R_20160001 RAL-765 1292 chr3R 20197778 20197806 chr3R 20197859 20197885 10 80 2.0 3.0 2.5 2.9 107 chr3R 20197778 intergenic not near genes chr3R 20197832 intergenic not near genes chr3R 20197885 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-765 1293 chr3R 20222550 20222571 chr3R 20222766 20222787 4 216 1.5 3.0 2.2 1.2 237 chr3R 20222550 intron Nlg4 + chr3R 20222668 intron Nlg4 + chr3R 20222787 intron Nlg4 + chr3R_4_20220001 chr3R_20220001 RAL-765 1294 chr3R 20231442 20231470 chr3R 20231621 20231649 5 179 19.0 15.5 17.2 0.3 207 chr3R 20231442 intron Nlg4 + chr3R 20231546 intron Nlg4 + chr3R 20231649 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-765 1295 chr3R 20266515 20266540 chr3R 20272986 20273011 Burdock 7 6471 0.0 1.5 0.8 3.9 6496 chr3R 20266515 intron cic + chr3R 20269763 intron cic + chr3R 20273011 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-765 1296 chr3R 20331000 20331030 chr3R 20331486 20331516 roo 9 486 1.0 1.0 1.0 4.5 516 chr3R 20331000 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331516 intergenic not near genes chr3R_9_20330001 chr3R_20330001 RAL-765 1297 chr3R 20411231 20411245 chr3R 20411446 20411460 4 215 0.0 2.5 1.2 1.8 229 chr3R 20411231 intron Gfrl - chr3R 20411346 intron Gfrl - chr3R 20411460 intron Gfrl - chr3R_4_20410001 chr3R_20410001 RAL-765 1298 chr3R 20482425 20482449 chr3R 20482514 20482538 7 89 0.5 2.0 1.2 3.2 113 chr3R 20482425 intron Gfrl - chr3R 20482482 intron Gfrl - chr3R 20482538 intron Gfrl - chr3R_7_20480001 chr3R_20480001 RAL-765 1299 chr3R 20516544 20516559 chr3R 20516900 20516913 4 356 2.5 1.0 1.8 1.4 369 chr3R 20516544 intergenic not near genes chr3R 20516728 intergenic not near genes chr3R 20516913 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-765 1300 chr3R 20686968 20686988 chr3R 20687403 20687423 5 435 4.0 3.5 3.8 1.0 455 chr3R 20686968 intergenic not near genes chr3R 20687196 intergenic not near genes chr3R 20687423 intergenic not near genes chr3R_5_20685001 chr3R_20685001 RAL-765 1301 chr3R 20735007 20735048 chr3R 20735092 20735133 9 79 3.0 0.5 1.8 3.2 126 chr3R 20735007 intergenic not near genes chr3R 20735070 intergenic not near genes chr3R 20735133 intergenic cdc2c + chr3R_9_20735001 chr3R_20735001 RAL-765 1302 chr3R 20787439 20787445 chr3R 20787530 20787536 4 91 5.0 3.0 4.0 0.8 97 chr3R 20787439 intron Syp + chr3R 20787488 intron Syp + chr3R 20787536 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-765 1303 chr3R 20870249 20870272 chr3R 20870334 20870357 14 84 4.0 2.0 3.0 3.5 108 chr3R 20870249 intergenic not near genes chr3R 20870303 intergenic not near genes chr3R 20870357 intergenic not near genes chr3R_14_20870001 chr3R_20870001 RAL-765 1304 chr3R 20901663 20901685 chr3R 20901766 20901788 9 103 2.0 2.0 2.0 3.0 125 chr3R 20901663 intergenic CG5621 + chr3R 20901726 intergenic CG5621 + chr3R 20901788 intergenic CG5621 + chr3R_9_20900001 chr3R_20900001 RAL-765 1305 chr3R 21014020 21014045 chr3R 21014098 21014123 4 78 2.0 5.0 3.5 0.9 103 chr3R 21014020 3` UTR Calx + chr3R 21014072 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-765 1306 chr3R 21016629 21016660 chr3R 21016765 21016797 6 137 3.0 4.5 3.8 1.2 168 chr3R 21016629 exon CG5697 + chr3R 21016713 exon CG5697 + chr3R 21016797 3` UTR CG5697 + chr3R_6_21015001 chr3R_21015001 RAL-765 1307 chr3R 21041108 21041129 chr3R 21041252 21041282 7 152 3.0 3.5 3.2 1.7 174 chr3R 21041108 exon Dhc93AB - chr3R 21041195 intron Dhc93AB - chr3R 21041282 intron Dhc93AB - chr3R_7_21040001 chr3R_21040001 RAL-765 1308 chr3R 21074808 21074829 chr3R 21075028 21075050 8 221 1.0 3.5 2.2 2.5 242 chr3R 21074808 intron dmrt93B + chr3R 21074929 intron dmrt93B + chr3R 21075050 intron dmrt93B + chr3R_8_21070001 chr3R_21070001 RAL-765 1309 chr3R 21141672 21141707 chr3R 21150153 21150187 Tirant 14 8479 3.0 3.5 3.2 3.3 8515 chr3R 21141672 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150187 intron SNF4Agamma + chr3R_14_21145001 chr3R_21145001 RAL-765 1310 chr3R 21154553 21154580 chr3R 21154758 21154795 8 214 4.0 0.0 2.0 2.7 242 chr3R 21154553 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154795 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-765 1311 chr3R 21240447 21240479 chr3R 21240539 21240571 11 92 2.5 2.0 2.2 3.4 124 chr3R 21240447 intergenic not near genes chr3R 21240509 intergenic not near genes chr3R 21240571 intergenic not near genes chr3R_11_21240001 chr3R_21240001 RAL-765 1312 chr3R 21385931 21385963 chr3R 21386008 21386040 7 77 2.0 0.5 1.2 3.2 109 chr3R 21385931 intergenic not near genes chr3R 21385986 intergenic not near genes chr3R 21386040 intergenic not near genes chr3R_7_21385001 chr3R_21385001 RAL-765 1313 chr3R 21472013 21472034 chr3R 21472094 21472115 6 81 2.5 2.5 2.5 1.7 102 chr3R 21472013 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-765 1314 chr3R 21519986 21520125 chr3R 21520087 21520218 5 99 1.5 1.5 1.5 2.0 232 chr3R 21519986 intergenic not near genes chr3R 21520102 intergenic not near genes chr3R 21520218 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-765 1315 chr3R 21733697 21733709 chr3R 21733821 21733832 5 123 1.0 0.0 0.5 3.3 135 chr3R 21733697 intergenic not near genes chr3R 21733764 intergenic not near genes chr3R 21733832 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-765 1316 chr3R 21761120 21761149 chr3R 21768512 21768541 mdg1 8 7391 4.0 2.5 3.2 1.9 7421 chr3R 21761120 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-765 1317 chr3R 8339246 8339247 chr3R 21907534 21907534 5 13568288 17.5 13.0 15.2 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-765 1318 chr3R 15286987 15286988 chr3R 21907534 21907534 5 6620547 12.0 13.0 12.5 0.4 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-765 1319 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 10.5 13.0 11.8 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-765 1320 chr3R 21907534 21907534 chr3R 28831801 28831803 35 6924268 15.5 18.0 16.8 2.0 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-765 1321 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 17.5 12.5 15.0 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-765 1322 chr3R 13104419 13104420 chr3R 21907535 21907535 4 8803115 25.0 12.5 18.8 0.2 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-765 1323 chr3R 21907535 21907535 chr3R 28831801 28831803 65 6924266 15.0 18.0 16.5 3.7 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_65_25365001 chr3R_25365001 RAL-765 1324 chr3R 9620954 9620956 chr3R 21907536 21907536 4 12286581 15.0 13.0 14.0 0.3 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-765 1325 chr3R 21907536 21907536 chr3R 28831801 28831802 55 6924266 15.0 18.0 16.5 3.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_55_25365001 chr3R_25365001 RAL-765 1326 chr3R 21982913 21982941 chr3R 21983021 21983049 6 108 1.0 1.0 1.0 3.0 136 chr3R 21982913 intron Eip93F + chr3R 21982981 intron Eip93F + chr3R 21983049 intron Eip93F + chr3R_6_21980001 chr3R_21980001 RAL-765 1327 chr3R 22040146 22040161 chr3R 22040323 22040336 4 176 2.0 1.0 1.5 1.6 190 chr3R 22040146 intergenic not near genes chr3R 22040241 intergenic not near genes chr3R 22040336 intergenic not near genes chr3R_4_22040001 chr3R_22040001 RAL-765 1328 chr3R 22226561 22226575 chr3R 22226747 22226762 4 187 3.5 2.5 3.0 1.0 201 chr3R 22226561 intron SKIP + chr3R 22226662 intron SKIP + chr3R 22226762 intron SKIP + chr3R_4_22225001 chr3R_22225001 RAL-765 1329 chr3R 22234685 22234707 chr3R 22236003 22236026 pogo 4 1319 2.5 1.0 1.8 1.4 1341 chr3R 22234685 intron SKIP + chr3R 22235356 intron SKIP + chr3R 22236026 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-765 1330 chr3R 22239496 22239502 chr3R 22248556 22248562 roo 4 9060 3.5 0.0 1.8 1.4 9066 chr3R 22239496 intron SKIP + chr3R 22244029 intron SKIP + chr3R 22248562 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-765 1331 chr3R 22428577 22428609 chr3R 22428653 22428684 14 75 3.0 2.5 2.8 3.7 107 chr3R 22428577 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428684 intron CG13847 - chr3R_14_22425001 chr3R_22425001 RAL-765 1332 chr3R 22450544 22450576 chr3R 22453184 22453216 NOF 10 2640 4.0 6.0 5.0 1.7 2672 chr3R 22450544 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-765 1333 chr3R 22591668 22591691 chr3R 22591748 22591771 5 80 2.5 3.0 2.8 1.3 103 chr3R 22591668 intron Efa6 + chr3R 22591720 intron Efa6 + chr3R 22591771 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-765 1334 chr3R 22797770 22797938 chr3R 22797855 22798032 10 93 0.0 0.0 0.0 10.0 262 chr3R 22797770 intergenic not near genes chr3R 22797901 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-765 1335 chr3R 22860153 22860176 chr3R 22860245 22860268 10 92 1.5 2.0 1.8 3.6 115 chr3R 22860153 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_10_22860001 chr3R_22860001 RAL-765 1336 chr3R 22877318 22877330 chr3R 22877446 22877456 4 128 1.5 3.0 2.2 1.2 138 chr3R 22877318 intergenic not near genes chr3R 22877387 intergenic not near genes chr3R 22877456 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-765 1337 chr3R 22953831 22953862 chr3R 22954483 22954514 6 652 2.5 0.0 1.2 2.7 683 chr3R 22953831 intron klg + chr3R 22954172 intron klg + chr3R 22954514 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-765 1338 chr3R 23073652 23073687 chr3R 23073741 23073775 15 88 2.5 1.5 2.0 5.0 123 chr3R 23073652 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073775 intron CG13830 - chr3R_15_23070001 chr3R_23070001 RAL-765 1339 chr3R 23114168 23114200 chr3R 23114244 23114278 11 77 2.5 3.5 3.0 2.8 110 chr3R 23114168 3` UTR Rassf - chr3R 23114223 3` UTR Rassf - chr3R 23114278 3` UTR Rassf - chr3R_11_23110001 chr3R_23110001 RAL-765 1340 chr3R 23380113 23380142 chr3R 23380216 23380245 9 102 1.0 2.0 1.5 3.6 132 chr3R 23380113 exon CG4393 - chr3R 23380179 intron CG4393 - chr3R 23380245 intron CG4393 - chr3R_9_23380001 chr3R_23380001 RAL-765 1341 chr3R 23629815 23629845 chr3R 23629894 23629924 15 78 2.5 3.0 2.8 3.9 109 chr3R 23629815 intron CG31145 - chr3R 23629870 intron CG31145 - chr3R 23629924 intron CG31145 - chr3R_15_23625001 chr3R_23625001 RAL-765 1342 chr3R 23663864 23663883 chr3R 23664029 23664048 6 163 0.5 2.0 1.2 2.7 184 chr3R 23663864 intron CG31145 - chr3R 23663956 intron CG31145 - chr3R 23664048 intron CG31145 - chr3R_6_23660001 chr3R_23660001 RAL-765 1343 chr3R 23684696 23684730 chr3R 23685181 23685216 roo 10 482 4.5 6.5 5.5 1.5 520 chr3R 23684696 exon CG18754 + chr3R 23684956 intron CG18754 + chr3R 23685216 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-765 1344 chr3R 23874210 23874230 chr3R 23874291 23874314 6 83 0.5 2.0 1.2 2.7 104 chr3R 23874210 intron Pli - chr3R 23874262 intron Pli - chr3R 23874314 intron Pli - chr3R_6_23870001 chr3R_23870001 RAL-765 1345 chr3R 23944910 23944932 chr3R 23944995 23945008 6 83 3.0 3.5 3.2 1.4 98 chr3R 23944910 intron CG12268 - chr3R 23944959 intron CG12268 - chr3R 23945008 intron CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-765 1346 chr3R 24011670 24011674 chr3R 24011753 24011757 4 83 2.5 2.5 2.5 1.1 87 chr3R 24011670 intron KrT95D - chr3R 24011714 intron KrT95D - chr3R 24011757 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-765 1347 chr3R 24072084 24072122 chr3R 24072521 24072560 jockey 19 437 5.0 6.5 5.8 2.8 476 chr3R 24072084 intron 4EHP - chr3R 24072322 intron 4EHP - chr3R 24072560 intron 4EHP - chr3R_19_24070001 chr3R_24070001 RAL-765 1348 chr3R 24076100 24076120 chr3R 24076189 24076208 5 89 3.0 3.0 3.0 1.2 108 chr3R 24076100 intron 4EHP - chr3R 24076154 intron 4EHP - chr3R 24076208 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-765 1349 chr3R 24076924 24076945 chr3R 24078387 24078412 hobo 5 1466 5.5 2.5 4.0 1.0 1488 chr3R 24076924 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-765 1350 chr3R 24199743 24199770 chr3R 24199823 24199850 7 80 1.5 2.0 1.8 2.5 107 chr3R 24199743 intron twin - chr3R 24199796 intron twin - chr3R 24199850 intron twin - chr3R_7_24195001 chr3R_24195001 RAL-765 1351 chr3R 24207216 24207242 chr3R 24212292 24212318 flea 6 5076 6.5 5.5 6.0 0.9 5102 chr3R 24207216 intron twin - chr3R 24209767 intron twin - chr3R 24212318 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-765 1352 chr3R 24431600 24431619 chr3R 24431679 24431698 4 79 3.5 2.0 2.8 1.1 98 chr3R 24431600 intron nAChRalpha1 - chr3R 24431649 intron nAChRalpha1 - chr3R 24431698 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-765 1353 chr3R 24434240 24434259 chr3R 24434318 24434334 4 77 4.5 2.0 3.2 1.0 94 chr3R 24434240 intron nAChRalpha1 - chr3R 24434287 intron nAChRalpha1 - chr3R 24434334 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-765 1354 chr3R 24730101 24730112 chr3R 24732478 24732490 Doc 5 2378 3.5 0.5 2.0 1.7 2389 chr3R 24730101 intron tok + chr3R 24731296 intron tok + chr3R 24732490 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-765 1355 chr3R 24743047 24743056 chr3R 24743132 24743141 4 85 1.5 4.0 2.8 1.1 94 chr3R 24743047 intron tok + chr3R 24743094 intron tok + chr3R 24743141 intron tok + chr3R_4_24740001 chr3R_24740001 RAL-765 1356 chr3R 24789984 24790006 chr3R 24790129 24790145 8 144 2.0 2.0 2.0 2.7 161 chr3R 24789984 intron,5` UTR Ets96B +,CG13634 - chr3R 24790064 intron,5` UTR Ets96B +,CG13634 - chr3R 24790145 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-765 1357 chr3R 24842108 24842129 chr3R 24842194 24842205 10 85 2.5 1.0 1.8 3.6 97 chr3R 24842108 5` UTR Esp + chr3R 24842156 5` UTR Esp + chr3R 24842205 5` UTR Esp + chr3R_10_24840001 chr3R_24840001 RAL-765 1358 chr3R 24845996 24846024 chr3R 24846086 24846114 6 90 3.0 4.0 3.5 1.3 118 chr3R 24845996 intron Esp + chr3R 24846055 intron Esp + chr3R 24846114 intron Esp + chr3R_6_24845001 chr3R_24845001 RAL-765 1359 chr3R 24927131 24927153 chr3R 24931922 24931944 Doc 8 4791 3.0 2.0 2.5 2.3 4813 chr3R 24927131 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931944 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-765 1360 chr3R 24973957 24973983 chr3R 24974033 24974059 6 76 5.5 4.0 4.8 1.0 102 chr3R 24973957 intergenic not near genes chr3R 24974008 intergenic not near genes chr3R 24974059 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-765 1361 chr3R 25072765 25072793 chr3R 25072857 25072885 5 91 3.0 1.5 2.2 1.6 120 chr3R 25072765 3` UTR CG9996 - chr3R 25072825 3` UTR CG9996 - chr3R 25072885 3` UTR CG9996 - chr3R_5_25070001 chr3R_25070001 RAL-765 1362 chr3R 25268060 25268066 chr3R 25272649 25272655 5 4589 13.0 15.0 14.0 0.3 4595 chr3R 25268060 intron CR45214 - chr3R 25270358 exon,5` UTR CG11889 +,CG11891 + chr3R 25272655 3` UTR,exon CG11889 +,CG11891 + chr3R_5_25270001 chr3R_25270001 RAL-765 1363 chr3R 25296476 25296507 chr3R 25297014 25297041 8 538 3.0 0.5 1.8 2.9 565 chr3R 25296476 exon CG31097 - chr3R 25296758 exon CG31097 - chr3R 25297041 exon CG31097 - chr3R_8_25295001 chr3R_25295001 RAL-765 1364 chr3R 25368482 25368505 chr3R 25368600 25368623 6 118 2.0 0.0 1.0 3.0 141 chr3R 25368482 intron Fur1 - chr3R 25368552 intron Fur1 - chr3R 25368623 intron Fur1 - chr3R_6_25365001 chr3R_25365001 RAL-765 1365 chr3R 25483334 25483363 chr3R 25483542 25483571 8 208 1.0 4.0 2.5 2.3 237 chr3R 25483334 intron,5` UTR CG42488 +,CG5116 + chr3R 25483452 exon,5` UTR CG42488 +,CG5116 + chr3R 25483571 3` UTR,exon CG42488 +,CG5116 + chr3R_8_25480001 chr3R_25480001 RAL-765 1366 chr3R 25512402 25512424 chr3R 25512480 25512502 10 77 1.5 3.0 2.2 3.1 100 chr3R 25512402 intergenic not near genes chr3R 25512452 intergenic not near genes chr3R 25512502 intergenic not near genes chr3R_10_25510001 chr3R_25510001 RAL-765 1367 chr3R 25671239 25671250 chr3R 25671337 25671341 5 96 2.0 0.0 1.0 2.5 102 chr3R 25671239 intron Lgr3 + chr3R 25671290 intron Lgr3 + chr3R 25671341 intron Lgr3 + chr3R_5_25670001 chr3R_25670001 RAL-765 1368 chr3R 25703201 25703213 chr3R 25703729 25703741 5 528 3.5 5.0 4.2 1.0 540 chr3R 25703201 intron LpR2 - chr3R 25703471 intron LpR2 - chr3R 25703741 intron LpR2 - chr3R_5_25700001 chr3R_25700001 RAL-765 1369 chr3R 25832692 25832703 chr3R 25841874 25841885 roo 10 9182 4.5 4.0 4.2 1.9 9193 chr3R 25832692 exon alpha4GT2 + chr3R 25837288 intron alpha4GT2 + chr3R 25841885 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-765 1370 chr3R 26038972 26038996 chr3R 26039105 26039133 8 136 3.0 0.0 1.5 3.2 161 chr3R 26038972 intergenic not near genes chr3R 26039052 intergenic not near genes chr3R 26039133 intergenic not near genes chr3R_8_26035001 chr3R_26035001 RAL-765 1371 chr3R 26122221 26122479 chr3R 26122323 26122555 6 84 3.5 0.0 1.8 2.1 334 chr3R 26122221 intron CG31324 + chr3R 26122388 intron CG31324 + chr3R 26122555 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-765 1372 chr3R 26126551 26126569 chr3R 26126637 26126655 6 86 3.0 4.5 3.8 1.2 104 chr3R 26126551 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126655 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-765 1373 chr3R 26235491 26235510 chr3R 26235573 26235592 6 82 1.0 4.5 2.8 1.6 101 chr3R 26235491 5` UTR CR42745 + chr3R 26235542 5` UTR CR42745 + chr3R 26235592 5` UTR CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-765 1374 chr3R 26239828 26239851 chr3R 26240138 26240162 6 311 2.0 1.5 1.8 2.1 334 chr3R 26239828 intron CR42745 + chr3R 26239995 intron CR42745 + chr3R 26240162 intron CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-765 1375 chr3R 26265821 26265847 chr3R 26265909 26265935 7 88 2.5 4.0 3.2 1.7 114 chr3R 26265821 intron CG6154 + chr3R 26265878 intron CG6154 + chr3R 26265935 intron CG6154 + chr3R_7_26265001 chr3R_26265001 RAL-765 1376 chr3R 26292103 26292141 chr3R 26292183 26292221 8 80 1.5 1.5 1.5 3.2 118 chr3R 26292103 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292221 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-765 1377 chr3R 26294716 26294749 chr3R 26294794 26294827 5 78 1.5 1.5 1.5 2.0 111 chr3R 26294716 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294827 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-765 1378 chr3R 26376326 26376358 chr3R 26385486 26385518 roo 8 9160 1.5 0.5 1.0 4.0 9192 chr3R 26376326 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385518 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-765 1379 chr3R 26387320 26387341 chr3R 26387397 26387418 4 77 0.5 2.0 1.2 1.8 98 chr3R 26387320 intergenic not near genes chr3R 26387369 intergenic not near genes chr3R 26387418 intergenic not near genes chr3R_4_26385001 chr3R_26385001 RAL-765 1380 chr3R 26546012 26546021 chr3R 26546194 26546203 4 182 0.0 2.0 1.0 2.0 191 chr3R 26546012 intron scrib + chr3R 26546108 intron scrib + chr3R 26546203 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-765 1381 chr3R 26558324 26558361 chr3R 26565637 26565658 Stalker4 6 7308 2.0 2.0 2.0 2.0 7334 chr3R 26558324 intron scrib + chr3R 26561991 intron scrib + chr3R 26565658 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-765 1382 chr3R 26641641 26641661 chr3R 26641728 26641748 4 87 6.0 6.5 6.2 0.6 107 chr3R 26641641 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641748 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-765 1383 chr3R 26671955 26671964 chr3R 26672043 26672052 5 88 0.0 3.0 1.5 2.0 97 chr3R 26671955 intron beat-VII - chr3R 26672004 intron beat-VII - chr3R 26672052 intron beat-VII - chr3R_5_26670001 chr3R_26670001 RAL-765 1384 chr3R 26727618 26727640 chr3R 26727756 26727778 5 138 0.5 1.5 1.0 2.5 160 chr3R 26727618 intron CG14246 + chr3R 26727698 intron CG14246 + chr3R 26727778 intron CG14246 + chr3R_5_26725001 chr3R_26725001 RAL-765 1385 chr3R 26770242 26770248 chr3R 26770319 26770325 4 77 5.5 1.0 3.2 1.0 83 chr3R 26770242 intergenic CR45563 + chr3R 26770284 intergenic CR45563 + chr3R 26770325 intergenic CR45563 + chr3R_4_26770001 chr3R_26770001 RAL-765 1386 chr3R 26810553 26810581 chr3R 26811037 26811066 roo 4 484 0.0 2.5 1.2 1.8 513 chr3R 26810553 intron Tl + chr3R 26810810 intron Tl + chr3R 26811066 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-765 1387 chr3R 26845573 26845604 chr3R 26845653 26845684 10 80 4.0 3.5 3.8 2.1 111 chr3R 26845573 intron Lerp - chr3R 26845628 intron Lerp - chr3R 26845684 intron Lerp - chr3R_10_26845001 chr3R_26845001 RAL-765 1388 chr3R 27027693 27027705 chr3R 27027775 27027787 5 82 2.5 1.5 2.0 1.7 94 chr3R 27027693 intron RYa-R + chr3R 27027740 intron RYa-R + chr3R 27027787 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-765 1389 chr3R 27028732 27028756 chr3R 27028811 27028835 4 79 0.5 2.0 1.2 1.8 103 chr3R 27028732 intron RYa-R + chr3R 27028784 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-765 1390 chr3R 27140520 27140543 chr3R 27148130 27148153 412 10 7610 4.0 3.0 3.5 2.2 7633 chr3R 27140520 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_10_27140001 chr3R_27140001 RAL-765 1391 chr3R 27245589 27245610 chr3R 27245680 27245700 8 90 2.5 1.0 1.8 2.9 111 chr3R 27245589 intergenic CG18766 - chr3R 27245644 intergenic CG18766 - chr3R 27245700 intergenic CG18766 - chr3R_8_27245001 chr3R_27245001 RAL-765 1392 chr3R 27292277 27292308 chr3R 27292389 27292412 13 110 3.5 2.5 3.0 3.2 135 chr3R 27292277 intergenic CG3348 - chr3R 27292344 intergenic CG3348 - chr3R 27292412 intergenic CG3348 - chr3R_13_27290001 chr3R_27290001 RAL-765 1393 chr3R 27301035 27301061 chr3R 27301396 27301422 6 361 3.5 3.0 3.2 1.4 387 chr3R 27301035 intron CG3339 - chr3R 27301228 intron CG3339 - chr3R 27301422 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-765 1394 chr3R 27315994 27316012 chr3R 27316070 27316088 9 76 6.0 3.0 4.5 1.6 94 chr3R 27315994 intron CG3339 - chr3R 27316041 intron CG3339 - chr3R 27316088 exon CG3339 - chr3R_9_27315001 chr3R_27315001 RAL-765 1395 chr3R 27323257 27323292 chr3R 27323999 27324034 5 740 5.5 1.0 3.2 1.2 777 chr3R 27323257 intergenic not near genes chr3R 27323646 intergenic not near genes chr3R 27324034 intergenic not near genes chr3R_5_27320001 chr3R_27320001 RAL-765 1396 chr3R 27342802 27342826 chr3R 27351383 27351407 Tirant 9 8580 2.5 2.5 2.5 2.6 8605 chr3R 27342802 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-765 1397 chr3R 27410272 27410300 chr3R 27410458 27410486 6 185 2.5 1.5 2.0 2.0 214 chr3R 27410272 intron side - chr3R 27410379 intron side - chr3R 27410486 intron side - chr3R_6_27410001 chr3R_27410001 RAL-765 1398 chr3R 27539808 27539833 chr3R 27540099 27540126 11 292 1.5 3.0 2.2 3.4 318 chr3R 27539808 intergenic not near genes chr3R 27539967 intergenic not near genes chr3R 27540126 intergenic not near genes chr3R_11_27535001 chr3R_27535001 RAL-765 1399 chr3R 27544937 27544942 chr3R 27545259 27545267 4 324 2.0 2.5 2.2 1.2 330 chr3R 27544937 exon Gr98c + chr3R 27545102 exon Gr98c + chr3R 27545267 exon Gr98c + chr3R_4_27545001 chr3R_27545001 RAL-765 1400 chr3R 27594734 27594768 chr3R 27594819 27594853 7 85 2.5 1.0 1.8 2.5 119 chr3R 27594734 intron CG5639 - chr3R 27594794 intron CG5639 - chr3R 27594853 intron CG5639 - chr3R_7_27590001 chr3R_27590001 RAL-765 1401 chr3R 27706775 27706807 chr3R 27706851 27706884 5 77 1.5 0.5 1.0 2.5 109 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706884 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-765 1402 chr3R 27725566 27725587 chr3R 27731008 27731029 I-element 8 5442 3.5 2.5 3.0 2.0 5463 chr3R 27725566 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731029 intergenic not near genes chr3R_8_27725001 chr3R_27725001 RAL-765 1403 chr3R 27779268 27779285 chr3R 27779348 27779365 10 79 5.0 9.0 7.0 1.2 97 chr3R 27779268 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_10_27775001 chr3R_27775001 RAL-765 1404 chr3R 27856766 27856791 chr3R 27858249 27858273 hopper2 8 1483 1.5 2.0 1.8 2.9 1507 chr3R 27856766 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858273 intron CG34353 - chr3R_8_27855001 chr3R_27855001 RAL-765 1405 chr3R 27862962 27862975 chr3R 27868267 27868277 Transpac 4 5304 3.5 0.0 1.8 1.4 5315 chr3R 27862962 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868277 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-765 1406 chr3R 27875699 27875730 chr3R 27882754 27882785 297 4 7054 1.5 1.5 1.5 1.6 7086 chr3R 27875699 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-765 1407 chr3R 28017947 28017979 chr3R 28018038 28018066 7 88 4.5 3.0 3.8 1.5 119 chr3R 28017947 intergenic not near genes chr3R 28018006 intergenic not near genes chr3R 28018066 intergenic not near genes chr3R_7_28015001 chr3R_28015001 RAL-765 1408 chr3R 28118081 28118295 chr3R 28118157 28118393 6 84 0.0 0.0 0.0 6.0 312 chr3R 28118081 intergenic not near genes chr3R 28118237 intergenic not near genes chr3R 28118393 intergenic not near genes chr3R_6_28115001 chr3R_28115001 RAL-765 1409 chr3R 28172964 28172993 chr3R 28173121 28173150 7 157 1.0 0.0 0.5 4.7 186 chr3R 28172964 intron CG34354 + chr3R 28173057 intron CG34354 + chr3R 28173150 intron CG34354 + chr3R_7_28170001 chr3R_28170001 RAL-765 1410 chr3R 28173680 28173704 chr3R 28181109 28181134 mdg1 4 7430 0.0 1.0 0.5 2.7 7454 chr3R 28173680 intron CG34354 + chr3R 28177407 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-765 1411 chr3R 28215815 28215845 chr3R 28215892 28215922 13 76 4.0 2.0 3.0 3.2 107 chr3R 28215815 intron CG34354 + chr3R 28215868 intron CG34354 + chr3R 28215922 intron CG34354 + chr3R_13_28215001 chr3R_28215001 RAL-765 1412 chr3R 28238734 28238759 chr3R 28238865 28238890 4 131 1.0 5.0 3.0 1.0 156 chr3R 28238734 3` UTR CG34354 + chr3R 28238812 3` UTR CG34354 + chr3R 28238890 3` UTR CG34354 + chr3R_4_28235001 chr3R_28235001 RAL-765 1413 chr3R 28253347 28253367 chr3R 28255854 28255877 jockey 7 2508 3.5 3.0 3.2 1.7 2530 chr3R 28253347 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255877 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-765 1414 chr3R 28302104 28302133 chr3R 28302543 28302572 jockey 11 439 2.5 2.5 2.5 3.1 468 chr3R 28302104 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302572 intergenic not near genes chr3R_11_28300001 chr3R_28300001 RAL-765 1415 chr3R 28393699 28393725 chr3R 28393799 28393825 7 100 3.0 0.0 1.5 2.8 126 chr3R 28393699 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393825 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-765 1416 chr3R 28407713 28407736 chr3R 28407799 28407821 7 86 2.0 4.5 3.2 1.7 108 chr3R 28407713 intergenic not near genes chr3R 28407767 intergenic not near genes chr3R 28407821 intergenic not near genes chr3R_7_28405001 chr3R_28405001 RAL-765 1417 chr3R 28424173 28424202 chr3R 28424261 28424290 7 89 2.5 1.0 1.8 2.5 117 chr3R 28424173 intron beat-VI + chr3R 28424232 intron beat-VI + chr3R 28424290 intron beat-VI + chr3R_7_28420001 chr3R_28420001 RAL-765 1418 chr3R 28478505 28478517 chr3R 28478581 28478593 7 76 2.0 5.0 3.5 1.6 88 chr3R 28478505 intergenic not near genes chr3R 28478549 intergenic not near genes chr3R 28478593 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-765 1419 chr3R 28479143 28479165 chr3R 28479241 28479263 9 98 4.5 2.0 3.2 2.1 120 chr3R 28479143 intergenic not near genes chr3R 28479203 intergenic not near genes chr3R 28479263 intergenic not near genes chr3R_9_28475001 chr3R_28475001 RAL-765 1420 chr3R 28546970 28546990 chr3R 28547076 28547096 4 106 1.0 2.5 1.8 1.4 126 chr3R 28546970 intergenic not near genes chr3R 28547033 intergenic not near genes chr3R 28547096 intergenic not near genes chr3R_4_28545001 chr3R_28545001 RAL-765 1421 chr3R 28594116 28594128 chr3R 28594195 28594207 5 79 0.5 3.0 1.8 1.8 91 chr3R 28594116 5` UTR CR43440 + chr3R 28594162 5` UTR CR43440 + chr3R 28594207 5` UTR CR43440 + chr3R_5_28590001 chr3R_28590001 RAL-765 1422 chr3R 28711742 28711761 chr3R 28711831 28711850 4 89 1.5 0.5 1.0 2.0 108 chr3R 28711742 intron htt + chr3R 28711796 intron htt + chr3R 28711850 intron htt + chr3R_4_28710001 chr3R_28710001 RAL-765 1423 chr3R 28792874 28792904 chr3R 28797969 28797999 jockey 6 5094 1.0 2.5 1.8 2.1 5125 chr3R 28792874 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797999 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-765 1424 chr3R 21907534 21907536 chr3R 28831799 28831801 49 6924266 15.0 18.0 16.5 2.8 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_49_25365001 chr3R_25365001 RAL-765 1425 chr3R 21907534 21907534 chr3R 28831802 28831804 45 6924267 15.5 18.0 16.8 2.5 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-765 1426 chr3R 28971160 28971184 chr3R 28971241 28971265 5 81 3.0 1.5 2.2 1.6 105 chr3R 28971160 5` UTR CR45669 + chr3R 28971212 5` UTR CR45669 + chr3R 28971265 5` UTR CR45669 + chr3R_5_28970001 chr3R_28970001 RAL-765 1427 chr3R 28989904 28989928 chr3R 28990079 28990102 6 175 4.5 2.0 3.2 1.4 198 chr3R 28989904 intergenic not near genes chr3R 28990003 intergenic not near genes chr3R 28990102 intergenic not near genes chr3R_6_28990001 chr3R_28990001 RAL-765 1428 chr3R 29054022 29054055 chr3R 29054098 29054127 9 74 1.5 2.5 2.0 3.0 105 chr3R 29054022 intergenic CG11842 +,CG11843 + chr3R 29054074 intergenic CG11842 +,CG11843 + chr3R 29054127 intergenic CG11842 +,CG11843 + chr3R_9_29050001 chr3R_29050001 RAL-765 1429 chr3R 29070058 29070079 chr3R 29070139 29070159 4 80 2.0 2.5 2.2 1.2 101 chr3R 29070058 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070159 intron CG11873 + chr3R_4_29070001 chr3R_29070001 RAL-765 1430 chr3R 29079384 29079408 chr3R 29080756 29080780 NOF 4 1372 1.0 2.0 1.5 1.6 1396 chr3R 29079384 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080780 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-765 1431 chr3R 29177799 29177816 chr3R 29178512 29178528 4 713 3.0 2.0 2.5 1.1 729 chr3R 29177799 intron CG14509 - chr3R 29178164 intron CG14509 - chr3R 29178528 intron CG14509 - chr3R_4_29175001 chr3R_29175001 RAL-765 1432 chr3R 29237246 29237276 chr3R 29239267 29239297 10 2020 14.5 6.0 10.2 0.9 2051 chr3R 29237246 exon CG11951 - chr3R 29238272 intron CG11951 - chr3R 29239297 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-765 1433 chr3R 29239223 29239246 chr3R 29245513 29245537 8 6291 6.0 30.0 18.0 0.4 6314 chr3R 29239223 exon CG31427 - chr3R 29242380 exon CG31445 - chr3R 29245537 exon SP1029 - chr3R_8_29240001 chr3R_29240001 RAL-765 1434 chr3R 29240315 29240338 chr3R 29240399 29240422 6 84 1.5 0.5 1.0 3.0 107 chr3R 29240315 5` UTR CG31427 - chr3R 29240368 intergenic CG31427 -,CG31445 - chr3R 29240422 intergenic CG31427 -,CG31445 - chr3R_6_29240001 chr3R_29240001 RAL-765 1435 chr3R 29256266 29256296 chr3R 29256344 29256375 9 78 5.0 3.0 4.0 1.8 109 chr3R 29256266 intergenic CG45544 +,stg - chr3R 29256320 intergenic CG45544 + chr3R 29256375 intergenic CG45544 + chr3R_9_29255001 chr3R_29255001 RAL-765 1436 chr3R 29406622 29406648 chr3R 29407899 29407907 jockey 8 1281 6.0 4.5 5.2 1.3 1285 chr3R 29406622 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407907 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-765 1437 chr3R 29429789 29429805 chr3R 29429867 29429883 4 78 1.0 0.5 0.8 2.2 94 chr3R 29429789 intron Ptp99A + chr3R 29429836 intron Ptp99A + chr3R 29429883 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-765 1438 chr3R 29436235 29436269 chr3R 29436384 29436418 7 149 3.5 3.0 3.2 1.7 183 chr3R 29436235 intron Ptp99A + chr3R 29436326 intron Ptp99A + chr3R 29436418 intron Ptp99A + chr3R_7_29435001 chr3R_29435001 RAL-765 1439 chr3R 29448336 29448357 chr3R 29448416 29448437 8 77 2.0 7.5 4.8 1.4 101 chr3R 29448336 intron Ptp99A + chr3R 29448386 intron Ptp99A + chr3R 29448437 intron Ptp99A + chr3R_8_29445001 chr3R_29445001 RAL-765 1440 chr3R 29453752 29453777 chr3R 29453828 29453853 4 76 0.0 2.0 1.0 2.0 101 chr3R 29453752 intron Ptp99A + chr3R 29453802 intron Ptp99A + chr3R 29453853 intron Ptp99A + chr3R_4_29450001 chr3R_29450001 RAL-765 1441 chr3R 29460940 29460961 chr3R 29461014 29461017 6 71 0.5 2.5 1.5 2.4 77 chr3R 29460940 intron Ptp99A + chr3R 29460978 intron Ptp99A + chr3R 29461017 intron Ptp99A + chr3R_6_29460001 chr3R_29460001 RAL-765 1442 chr3R 29472007 29472036 chr3R 29472100 29472129 11 93 1.5 1.5 1.5 4.4 122 chr3R 29472007 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_11_29470001 chr3R_29470001 RAL-765 1443 chr3R 29494402 29494421 chr3R 29494630 29494652 4 230 3.0 6.0 4.5 0.7 250 chr3R 29494402 intergenic Diedel +,CG2010 + chr3R 29494527 intergenic CG2010 +,Diedel + chr3R 29494652 intergenic CG2010 +,Diedel + chr3R_4_29490001 chr3R_29490001 RAL-765 1444 chr3R 29575839 29575846 chr3R 29575922 29575929 4 83 0.0 0.0 0.0 4.0 90 chr3R 29575839 intergenic not near genes chr3R 29575884 intergenic not near genes chr3R 29575929 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-765 1445 chr3R 29669511 29669541 chr3R 29669876 29669906 13 364 4.0 4.0 4.0 2.6 395 chr3R 29669511 exon ppk30 + chr3R 29669708 exon ppk30 + chr3R 29669906 exon ppk30 + chr3R_13_29665001 chr3R_29665001 RAL-765 1446 chr3R 29708569 29708581 chr3R 29708647 29708659 5 78 2.0 4.5 3.2 1.2 90 chr3R 29708569 intergenic not near genes chr3R 29708614 intergenic not near genes chr3R 29708659 intergenic not near genes chr3R_5_29705001 chr3R_29705001 RAL-765 1447 chr3R 29738272 29738300 chr3R 29739739 29739765 hobo 5 1466 0.0 4.0 2.0 1.7 1493 chr3R 29738272 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739765 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-765 1448 chr3R 29758943 29758968 chr3R 29759018 29759046 17 77 3.0 2.5 2.8 4.5 103 chr3R 29758943 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759046 intergenic CR44953 - chr3R_17_29755001 chr3R_29755001 RAL-765 1449 chr3R 29760365 29760388 chr3R 29761566 29761589 pogo 6 1201 1.5 2.0 1.8 2.1 1224 chr3R 29760365 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761589 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-765 1450 chr3R 29880583 29880619 chr3R 29880668 29880704 7 80 1.5 4.0 2.8 1.8 121 chr3R 29880583 intron CG31038 + chr3R 29880644 intron CG31038 + chr3R 29880704 intron CG31038 + chr3R_7_29880001 chr3R_29880001 RAL-765 1451 chr3R 29882017 29882051 chr3R 29891174 29891208 roo 11 9157 0.5 4.0 2.2 3.4 9191 chr3R 29882017 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-765 1452 chr3R 29966065 29966069 chr3R 29966142 29966143 4 76 1.5 4.5 3.0 1.0 78 chr3R 29966065 intron TkR99D - chr3R 29966104 intron TkR99D - chr3R 29966143 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-765 1453 chr3R 30013382 30013404 chr3R 30013480 30013501 6 98 3.0 2.5 2.8 1.6 119 chr3R 30013382 intron CG7920 - chr3R 30013442 intron CG7920 - chr3R 30013501 intron CG7920 - chr3R_6_30010001 chr3R_30010001 RAL-765 1454 chr3R 30032164 30032181 chr3R 30032243 30032259 6 78 3.5 2.0 2.8 1.6 95 chr3R 30032164 intron Axn + chr3R 30032212 intron Axn + chr3R 30032259 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-765 1455 chr3R 30083004 30083019 chr3R 30083080 30083095 4 76 0.0 1.5 0.8 2.2 91 chr3R 30083004 intron sima + chr3R 30083050 intron sima + chr3R 30083095 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-765 1456 chr3R 30084856 30084883 chr3R 30086323 30086348 hobo 9 1467 1.0 4.5 2.8 2.4 1492 chr3R 30084856 intron sima + chr3R 30085602 intron sima + chr3R 30086348 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-765 1457 chr3R 30170765 30170786 chr3R 30170852 30170873 5 87 2.0 6.0 4.0 1.0 108 chr3R 30170765 intron CG31028 - chr3R 30170819 intron CG31028 - chr3R 30170873 intron CG31028 - chr3R_5_30170001 chr3R_30170001 RAL-765 1458 chr3R 30210661 30210673 chr3R 30210741 30210753 4 80 0.0 2.0 1.0 2.0 92 chr3R 30210661 intergenic CecA1 +,Anp + chr3R 30210707 intergenic CecA1 +,Anp + chr3R 30210753 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-765 1459 chr3R 30260375 30260391 chr3R 30260450 30260467 7 76 1.5 1.5 1.5 2.8 92 chr3R 30260375 intergenic not near genes chr3R 30260421 intergenic not near genes chr3R 30260467 intergenic not near genes chr3R_7_30260001 chr3R_30260001 RAL-765 1460 chr3R 30268245 30268263 chr3R 30268324 30268342 6 79 3.5 3.5 3.5 1.3 97 chr3R 30268245 intergenic not near genes chr3R 30268294 intergenic not near genes chr3R 30268342 intergenic not near genes chr3R_6_30265001 chr3R_30265001 RAL-765 1461 chr3R 30301463 30301495 chr3R 30301544 30301577 5 83 0.5 3.5 2.0 1.7 114 chr3R 30301463 intron hdc + chr3R 30301520 intron hdc + chr3R 30301577 intron hdc + chr3R_5_30300001 chr3R_30300001 RAL-765 1462 chr3R 30307126 30307139 chr3R 30307206 30307220 8 81 0.0 0.0 0.0 8.0 94 chr3R 30307126 intron hdc + chr3R 30307173 intron hdc + chr3R 30307220 intron hdc + chr3R_8_30305001 chr3R_30305001 RAL-765 1463 chr3R 30332029 30332060 chr3R 30332108 30332139 14 78 4.5 2.0 3.2 3.3 110 chr3R 30332029 intron hdc + chr3R 30332084 intron hdc + chr3R 30332139 intron hdc + chr3R_14_30330001 chr3R_30330001 RAL-765 1464 chr3R 30396219 30396246 chr3R 30404485 30404512 roo 5 8265 4.0 2.5 3.2 1.2 8293 chr3R 30396219 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-765 1465 chr3R 30461491 30461522 chr3R 30461608 30461639 11 116 2.5 2.5 2.5 3.1 148 chr3R 30461491 intron CDase + chr3R 30461565 intron CDase + chr3R 30461639 intron CDase + chr3R_11_30460001 chr3R_30460001 RAL-765 1466 chr3R 30480473 30480513 chr3R 30482941 30482981 jockey 22 2467 2.5 4.5 3.5 4.9 2508 chr3R 30480473 intron PH4alphaEFB + chr3R 30481727 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_22_30480001 chr3R_30480001 RAL-765 1467 chr3R 30485057 30485069 chr3R 30485133 30485144 6 76 1.5 2.5 2.0 2.0 87 chr3R 30485057 intron PH4alphaEFB + chr3R 30485100 intron PH4alphaEFB + chr3R 30485144 intron PH4alphaEFB + chr3R_6_30485001 chr3R_30485001 RAL-765 1468 chr3R 30627602 30627620 chr3R 30627682 30627698 8 79 3.5 5.5 4.5 1.5 96 chr3R 30627602 3` UTR CG2267 - chr3R 30627650 exon CG2267 - chr3R 30627698 exon CG2267 - chr3R_8_30625001 chr3R_30625001 RAL-765 1469 chr3R 30627622 30627638 chr3R 30627681 30627712 5 72 2.0 5.5 3.8 1.0 90 chr3R 30627622 exon CG2267 - chr3R 30627667 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-765 1470 chr3R 30672235 30672260 chr3R 30672323 30672347 8 88 3.0 1.0 2.0 2.7 112 chr3R 30672235 intergenic not near genes chr3R 30672291 intergenic not near genes chr3R 30672347 intergenic not near genes chr3R_8_30670001 chr3R_30670001 RAL-765 1471 chr3R 30679520 30679548 chr3R 30686989 30687017 blood 11 7467 2.5 2.5 2.5 3.1 7497 chr3R 30679520 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-765 1472 chr3R 30690160 30690192 chr3R 30690244 30690276 8 84 3.0 2.0 2.5 2.3 116 chr3R 30690160 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_8_30690001 chr3R_30690001 RAL-765 1473 chr3R 30818808 30818837 chr3R 30820373 30820402 1360 10 1565 2.5 3.0 2.8 2.6 1594 chr3R 30818808 intron cindr + chr3R 30819605 intron cindr + chr3R 30820402 intron cindr + chr3R_10_30815001 chr3R_30815001 RAL-765 1474 chr3R 30841955 30841985 chr3R 30842074 30842104 11 119 2.0 0.5 1.2 5.0 149 chr3R 30841955 3` UTR CG15544 + chr3R 30842030 3` UTR CG15544 + chr3R 30842104 intergenic CG15544 + chr3R_11_30840001 chr3R_30840001 RAL-765 1475 chr3R 30900526 30900554 chr3R 30900600 30900634 9 79 1.0 1.5 1.2 4.1 108 chr3R 30900526 3` UTR Cyp4c3 + chr3R 30900580 3` UTR Cyp4c3 + chr3R 30900634 3` UTR Cyp4c3 + chr3R_9_30900001 chr3R_30900001 RAL-765 1476 chr3R 30948074 30948109 chr3R 30948265 30948300 16 189 1.0 5.0 3.0 4.0 226 chr3R 30948074 intergenic not near genes chr3R 30948187 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_16_30945001 chr3R_30945001 RAL-765 1477 chr3R 30965852 30965884 chr3R 30965938 30965970 11 86 3.0 2.0 2.5 3.1 118 chr3R 30965852 intergenic not near genes chr3R 30965911 intergenic not near genes chr3R 30965970 intergenic not near genes chr3R_11_30965001 chr3R_30965001 RAL-765 1478 chr3R 31069651 31069675 chr3R 31069746 31069770 6 95 1.5 3.0 2.2 1.9 119 chr3R 31069651 intron Sox100B + chr3R 31069710 intron Sox100B + chr3R 31069770 intron Sox100B + chr3R_6_31065001 chr3R_31065001 RAL-765 1479 chr3R 31074229 31074260 chr3R 31081827 31081858 springer 5 7598 4.5 3.0 3.8 1.0 7629 chr3R 31074229 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-765 1480 chr3R 31087100 31087125 chr3R 31087612 31087628 6 510 2.5 3.0 2.8 1.6 528 chr3R 31087100 intergenic not near genes chr3R 31087364 intergenic not near genes chr3R 31087628 intergenic not near genes chr3R_6_31085001 chr3R_31085001 RAL-765 1481 chr3R 31156488 31156512 chr3R 31156570 31156594 10 82 1.5 3.0 2.2 3.1 106 chr3R 31156488 intron Gycbeta100B + chr3R 31156541 intron Gycbeta100B + chr3R 31156594 intron Gycbeta100B + chr3R_10_31155001 chr3R_31155001 RAL-765 1482 chr3R 31174728 31174754 chr3R 31174835 31174861 9 107 2.5 7.5 5.0 1.5 133 chr3R 31174728 intron Gycbeta100B + chr3R 31174794 intron Gycbeta100B + chr3R 31174861 intron Gycbeta100B + chr3R_9_31170001 chr3R_31170001 RAL-765 1483 chr3R 31279373 31279405 chr3R 31285564 31285596 diver 10 6189 4.0 3.0 3.5 2.2 6223 chr3R 31279373 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285596 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-765 1484 chr3R 31338147 31338169 chr3R 31338369 31338391 4 222 2.5 1.5 2.0 1.3 244 chr3R 31338147 intron CG34347 + chr3R 31338269 intron CG34347 + chr3R 31338391 intron CG34347 + chr3R_4_31335001 chr3R_31335001 RAL-765 1485 chr3R 31354862 31354879 chr3R 31354942 31354959 6 80 0.5 8.5 4.5 1.1 97 chr3R 31354862 intron CG34347 + chr3R 31354910 intron CG34347 + chr3R 31354959 intron CG34347 + chr3R_6_31350001 chr3R_31350001 RAL-765 1486 chr3R 31382823 31382841 chr3R 31383219 31383237 7 396 13.0 17.0 15.0 0.4 414 chr3R 31382823 intron CG1607 + chr3R 31383030 intron CG1607 + chr3R 31383237 intron CG1607 + chr3R_7_31380001 chr3R_31380001 RAL-765 1487 chr3R 31413092 31413121 chr3R 31418292 31418320 copia 7 5199 4.5 0.0 2.2 2.2 5228 chr3R 31413092 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418320 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-765 1488 chr3R 31435365 31435390 chr3R 31435516 31435542 8 151 1.5 3.5 2.5 2.3 177 chr3R 31435365 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435542 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-765 1489 chr3R 31691530 31691564 chr3R 31696296 31696329 Doc 14 4765 4.0 5.5 4.8 2.4 4799 chr3R 31691530 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_14_31690001 chr3R_31690001 RAL-765 1490 chr3R 31699719 31699750 chr3R 31699797 31699832 9 81 1.5 1.0 1.2 4.1 113 chr3R 31699719 intergenic not near genes chr3R 31699776 intergenic not near genes chr3R 31699832 intergenic not near genes chr3R_9_31695001 chr3R_31695001 RAL-765 1491 chr3R 31829376 31829415 chr3R 31829452 31829491 19 73 3.5 3.5 3.5 4.2 115 chr3R 31829376 intron RhoGAP100F + chr3R 31829434 intron RhoGAP100F + chr3R 31829491 intron RhoGAP100F + chr3R_19_31825001 chr3R_31825001 RAL-765 1492 chr3R 31858748 31858779 chr3R 31858832 31858862 5 84 3.5 3.0 3.2 1.2 114 chr3R 31858748 intron heph - chr3R 31858805 intron heph - chr3R 31858862 intron heph - chr3R_5_31855001 chr3R_31855001 RAL-765 1493 chr3R 31874847 31874874 chr3R 31874922 31874950 4 74 2.5 1.5 2.0 1.3 103 chr3R 31874847 intron heph - chr3R 31874898 intron heph - chr3R 31874950 intron heph - chr3R_4_31870001 chr3R_31870001 RAL-765 1494 chr3R 31885684 31885705 chr3R 31885761 31885781 13 77 3.0 4.0 3.5 2.9 97 chr3R 31885684 intron heph - chr3R 31885732 intron heph - chr3R 31885781 intron heph - chr3R_13_31885001 chr3R_31885001 RAL-765 1495 chr3R 31924600 31924605 chr3R 31924681 31924686 4 81 0.0 5.0 2.5 1.1 86 chr3R 31924600 intron heph - chr3R 31924643 intron heph - chr3R 31924686 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-765 1496 chr3R 31931193 31931215 chr3R 31931276 31931298 5 83 1.5 0.5 1.0 2.5 105 chr3R 31931193 intron heph - chr3R 31931246 intron heph - chr3R 31931298 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-765 1497 chr3R 31997996 31998015 chr3R 32005465 32005485 blood 5 7469 0.0 1.0 0.5 3.3 7489 chr3R 31997996 intron heph - chr3R 32001740 intron heph - chr3R 32005485 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-765 1498 chr4 671605 671623 chr4 680188 680205 Tirant 4 8583 1.5 1.5 1.5 1.6 8600 chr4 671605 intron CG11360 + chr4 675905 intron CG11360 + chr4 680205 intron CG11360 + chr4_4_675001 chr4_675001 RAL-765 1499 chr4 694912 694927 chr4 694992 695008 4 80 0.0 0.5 0.2 3.3 96 chr4 694912 intron myo - chr4 694960 intron myo - chr4 695008 intron myo - chr4_4_690001 chr4_690001 RAL-765 1500 chr4 959625 959643 chr4 959804 959821 4 179 2.5 0.5 1.5 1.6 196 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959723 5` UTR CR44030 + chr4 959821 5` UTR CR44030 + chr4_4_955001 chr4_955001 RAL-765 1501 chrX 295866 295874 chrX 303486 303494 412 4 7620 1.5 3.5 2.5 1.1 7628 chrX 295866 intron CG3777 + chrX 299680 intron CG3777 + chrX 303494 intron CG3777 + chrX_4_295001 chrX_295001 RAL-765 1502 chrX 318470 318501 chrX 323556 323587 flea 5 5086 2.0 2.0 2.0 1.7 5117 chrX 318470 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323587 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-765 1503 chrX 428420 428452 chrX 434605 434637 3S18 5 6185 1.5 0.0 0.8 2.8 6217 chrX 428420 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_5_430001 chrX_430001 RAL-765 1504 chrX 551438 551454 chrX 558993 559016 412 6 7556 2.0 5.5 3.8 1.2 7578 chrX 551438 intron Appl + chrX 555227 intron Appl + chrX 559016 intron Appl + chrX_6_555001 chrX_555001 RAL-765 1505 chrX 611144 611164 chrX 611234 611254 7 90 2.5 2.0 2.2 2.2 110 chrX 611144 intron CG13366 - chrX 611199 intron CG13366 - chrX 611254 intron CG13366 - chrX_7_610001 chrX_610001 RAL-765 1506 chrX 667652 667672 chrX 667735 667756 6 84 1.0 0.0 0.5 4.0 104 chrX 667652 intergenic not near genes chrX 667704 intergenic not near genes chrX 667756 intergenic not near genes chrX_6_665001 chrX_665001 RAL-765 1507 chrX 670265 670283 chrX 670345 670363 4 80 0.0 0.5 0.2 3.3 98 chrX 670265 intergenic not near genes chrX 670314 intergenic not near genes chrX 670363 intergenic not near genes chrX_4_670001 chrX_670001 RAL-765 1508 chrX 680845 680868 chrX 680928 680951 4 83 2.5 2.5 2.5 1.1 106 chrX 680845 intergenic not near genes chrX 680898 intergenic not near genes chrX 680951 intergenic not near genes chrX_4_680001 chrX_680001 RAL-765 1509 chrX 695290 695324 chrX 695367 695401 6 76 2.0 2.0 2.0 2.0 111 chrX 695290 intron sdk + chrX 695346 intron sdk + chrX 695401 intron sdk + chrX_6_695001 chrX_695001 RAL-765 1510 chrX 706806 706824 chrX 707170 707188 6 362 0.0 2.0 1.0 3.0 382 chrX 706806 intron sdk + chrX 706997 intron sdk + chrX 707188 intron sdk + chrX_6_705001 chrX_705001 RAL-765 1511 chrX 778130 778160 chrX 778218 778250 7 89 1.0 0.5 0.8 3.9 120 chrX 778130 intron fz3 + chrX 778190 intron fz3 + chrX 778250 intron fz3 + chrX_7_775001 chrX_775001 RAL-765 1512 chrX 780593 780603 chrX 780669 780678 5 76 3.0 0.0 1.5 2.0 85 chrX 780593 intron fz3 + chrX 780636 intron fz3 + chrX 780678 intron fz3 + chrX_5_780001 chrX_780001 RAL-765 1513 chrX 806786 806815 chrX 806882 806909 7 95 2.0 2.0 2.0 2.3 123 chrX 806786 intron Sec22 + chrX 806848 intron Sec22 + chrX 806909 intron Sec22 + chrX_7_805001 chrX_805001 RAL-765 1514 chrX 826382 826399 chrX 826541 826558 7 160 4.5 2.5 3.5 1.6 176 chrX 826382 intron CG43867 - chrX 826470 intron CG43867 - chrX 826558 intron CG43867 - chrX_7_825001 chrX_825001 RAL-765 1515 chrX 827601 827619 chrX 835393 835411 roo 6 7792 4.5 0.5 2.5 1.7 7810 chrX 827601 intron CG43867 - chrX 831506 intron CG43867 - chrX 835411 intron CG43867 - chrX_6_830001 chrX_830001 RAL-765 1516 chrX 868496 868516 chrX 868572 868590 5 75 2.5 6.5 4.5 0.9 94 chrX 868496 intron CG43867 - chrX 868543 intron CG43867 - chrX 868590 intron CG43867 - chrX_5_865001 chrX_865001 RAL-765 1517 chrX 906701 906732 chrX 908490 908521 S-element 13 1788 1.0 6.5 3.8 2.7 1820 chrX 906701 intron CG43867 - chrX 907611 intron CG43867 - chrX 908521 intron CG43867 - chrX_13_905001 chrX_905001 RAL-765 1518 chrX 1053117 1053123 chrX 16983076 16983076 7 15929957 8.0 7.0 7.5 0.8 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-765 1519 chrX 1253729 1253758 chrX 1253811 1253840 13 82 4.0 1.5 2.8 3.4 111 chrX 1253729 intron Atf3 - chrX 1253784 intron Atf3 - chrX 1253840 intron Atf3 - chrX_13_1250001 chrX_1250001 RAL-765 1520 chrX 1518038 1518074 chrX 1523439 1523476 jockey 9 5402 1.5 2.0 1.8 3.2 5438 chrX 1518038 intergenic inc + chrX 1520757 intergenic not near genes chrX 1523476 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-765 1521 chrX 1554508 1554542 chrX 1554665 1554699 11 157 22.5 22.5 22.5 0.5 191 chrX 1554508 exon Mur2B - chrX 1554604 intron Mur2B - chrX 1554699 exon Mur2B - chrX_11_1550001 chrX_1550001 RAL-765 1522 chrX 1627979 1627996 chrX 1635447 1635464 gtwin 5 7468 5.5 3.5 4.5 0.9 7485 chrX 1627979 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635464 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-765 1523 chrX 1831758 1831767 chrX 1831851 1831860 5 93 0.0 3.0 1.5 2.0 102 chrX 1831758 intron CG42666 + chrX 1831809 intron CG42666 + chrX 1831860 intron CG42666 + chrX_5_1830001 chrX_1830001 RAL-765 1524 chrX 1930547 1930562 chrX 1938113 1938130 opus 4 7569 1.0 2.5 1.8 1.4 7583 chrX 1930547 intergenic CG11596 + chrX 1934338 intergenic not near genes chrX 1938130 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-765 1525 chrX 1954893 1954910 chrX 1962824 1962850 Stalker2 7 7937 5.5 3.0 4.2 1.3 7957 chrX 1954893 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962850 intron Hr4 + chrX_7_1955001 chrX_1955001 RAL-765 1526 chrX 2146656 2146688 chrX 2146748 2146781 10 92 3.5 3.0 3.2 2.4 125 chrX 2146656 intron Pgd + chrX 2146718 intron Pgd + chrX 2146781 intron Pgd + chrX_10_2145001 chrX_2145001 RAL-765 1527 chrX 2159854 2159856 chrX 15115128 15115132 6 12955275 23.0 14.0 18.5 0.3 12955278 chrX 2159854 exon Cyp4d1 - chrX 8637493 intron oc - chrX 15115132 exon Cyp4s3 - chrX_6_8635001 chrX_8635001 RAL-765 1528 chrX 2164374 2164402 chrX 2164461 2164488 6 86 3.5 3.5 3.5 1.3 114 chrX 2164374 intron CG3630 + chrX 2164431 intron CG3630 + chrX 2164488 intron CG3630 + chrX_6_2160001 chrX_2160001 RAL-765 1529 chrX 2385747 2385761 chrX 2385825 2385839 7 76 2.5 1.5 2.0 2.3 92 chrX 2385747 intron PsGEF - chrX 2385793 intron PsGEF - chrX 2385839 intron PsGEF - chrX_7_2385001 chrX_2385001 RAL-765 1530 chrX 2399837 2399862 chrX 2408188 2408211 roo 10 8351 4.0 0.5 2.2 3.1 8374 chrX 2399837 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408211 intergenic not near genes chrX_10_2400001 chrX_2400001 RAL-765 1531 chrX 2415130 2415144 chrX 2415199 2415223 4 77 3.0 2.5 2.8 1.1 93 chrX 2415130 intergenic not near genes chrX 2415176 intergenic not near genes chrX 2415223 intergenic not near genes chrX_4_2415001 chrX_2415001 RAL-765 1532 chrX 2578819 2578846 chrX 2578906 2578938 6 91 2.0 1.0 1.5 2.4 119 chrX 2578819 intergenic Pdfr +,Vha36-3 - chrX 2578878 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-765 1533 chrX 2635379 2635401 chrX 2635482 2635509 4 107 2.0 2.0 2.0 1.3 130 chrX 2635379 intron sgg + chrX 2635444 intron sgg + chrX 2635509 intron sgg + chrX_4_2635001 chrX_2635001 RAL-765 1534 chrX 2664385 2664418 chrX 2665529 2665564 1360 5 1145 1.5 3.0 2.2 1.6 1179 chrX 2664385 intron sgg + chrX 2664974 intron sgg + chrX 2665564 intron sgg + chrX_5_2660001 chrX_2660001 RAL-765 1535 chrX 2844896 2844931 chrX 2852306 2852341 mdg1 5 7410 2.0 0.5 1.2 2.3 7445 chrX 2844896 intron kirre + chrX 2848618 intron kirre + chrX 2852341 intron kirre + chrX_5_2845001 chrX_2845001 RAL-765 1536 chrX 2888114 2888139 chrX 2888192 2888217 10 77 3.0 3.0 3.0 2.5 103 chrX 2888114 intron kirre + chrX 2888166 intron kirre + chrX 2888217 intron kirre + chrX_10_2885001 chrX_2885001 RAL-765 1537 chrX 2932230 2932256 chrX 2932306 2932333 9 80 1.5 0.5 1.0 4.5 103 chrX 2932230 intron,exon kirre +,CG32793 + chrX 2932282 intron,exon kirre +,CG32793 + chrX 2932333 intron,exon kirre +,CG32793 + chrX_9_2930001 chrX_2930001 RAL-765 1538 chrX 3058030 3058048 chrX 3058271 3058289 pogo 5 241 2.5 0.0 1.2 2.3 259 chrX 3058030 intron kirre + chrX 3058160 intron kirre + chrX 3058289 intron kirre + chrX_5_3055001 chrX_3055001 RAL-765 1539 chrX 3306345 3306358 chrX 3306427 3306438 6 82 2.5 0.0 1.2 2.7 93 chrX 3306345 intron dnc + chrX 3306392 intron dnc + chrX 3306438 intron dnc + chrX_6_3305001 chrX_3305001 RAL-765 1540 chrX 3398147 3398156 chrX 3398228 3398237 4 81 4.5 4.5 4.5 0.7 90 chrX 3398147 intron,intron CR44999 +,CG12535 - chrX 3398192 intron,intron CR44999 +,CG12535 - chrX 3398237 intron,intron CR44999 +,CG12535 - chrX_4_3395001 chrX_3395001 RAL-765 1541 chrX 3493092 3493125 chrX 3502251 3502282 roo 6 9158 0.0 1.5 0.8 3.3 9190 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497687 intron,intron CR44999 +,Gas8 - chrX 3502282 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-765 1542 chrX 3597554 3597572 chrX 3619722 3619739 roo 5 22168 2.0 1.0 1.5 2.0 22185 chrX 3597554 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619739 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-765 1543 chrX 3726760 3726794 chrX 3730156 3730191 NOF 6 3397 0.5 1.0 0.8 3.3 3431 chrX 3726760 intron tlk + chrX 3728476 intron tlk + chrX 3730191 intron tlk + chrX_6_3725001 chrX_3725001 RAL-765 1544 chrX 3986861 3986892 chrX 3994494 3994525 412 5 7633 2.5 2.0 2.2 1.6 7664 chrX 3986861 intergenic not near genes chrX 3990693 intergenic not near genes chrX 3994525 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-765 1545 chrX 4048502 4048517 chrX 4048578 4048591 4 76 5.5 3.0 4.2 0.8 89 chrX 4048502 3` UTR CR45482 - chrX 4048546 3` UTR CR45482 - chrX 4048591 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-765 1546 chrX 4252945 4252981 chrX 4253033 4253069 6 88 0.0 0.0 0.0 6.0 124 chrX 4252945 intergenic CG15576 - chrX 4253007 intergenic CG15576 - chrX 4253069 intergenic CG15576 - chrX_6_4250001 chrX_4250001 RAL-765 1547 chrX 4496429 4496431 chrX 4496527 4496529 5 98 7.0 4.5 5.8 0.7 100 chrX 4496429 intron CR32773 - chrX 4496479 intron CR32773 - chrX 4496529 intron CR32773 - chrX_5_4495001 chrX_4495001 RAL-765 1548 chrX 4515834 4515856 chrX 4515912 4515934 6 78 0.5 3.0 1.8 2.1 100 chrX 4515834 intron CR32773 - chrX 4515884 intron CR32773 - chrX 4515934 intron CR32773 - chrX_6_4515001 chrX_4515001 RAL-765 1549 chrX 4698058 4698092 chrX 4698151 4698185 11 91 0.5 3.0 1.8 3.9 127 chrX 4698058 intron ctp + chrX 4698122 intron ctp + chrX 4698185 intron ctp + chrX_11_4695001 chrX_4695001 RAL-765 1550 chrX 4700392 4700421 chrX 4700735 4700764 jockey 7 343 2.5 1.0 1.8 2.5 372 chrX 4700392 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700764 3` UTR ctp + chrX_7_4700001 chrX_4700001 RAL-765 1551 chrX 4731813 4731831 chrX 4736906 4736922 jockey 5 5093 5.0 3.5 4.2 1.0 5109 chrX 4731813 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736922 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-765 1552 chrX 4763254 4763265 chrX 4763740 4763753 Stalker4 4 487 2.0 0.5 1.2 1.8 499 chrX 4763254 intergenic not near genes chrX 4763504 intergenic not near genes chrX 4763753 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-765 1553 chrX 4827968 4828002 chrX 4835338 4835372 Stalker4 9 7368 1.0 0.5 0.8 5.0 7404 chrX 4827968 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835372 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-765 1554 chrX 4860415 4860429 chrX 4860521 4860546 7 114 4.5 3.0 3.8 1.5 131 chrX 4860415 intron CG42594 + chrX 4860480 intron CG42594 + chrX 4860546 intron CG42594 + chrX_7_4860001 chrX_4860001 RAL-765 1555 chrX 4902644 4902672 chrX 4902725 4902751 7 80 3.5 1.0 2.2 2.2 107 chrX 4902644 intron CG42594 + chrX 4902698 intron CG42594 + chrX 4902751 intron CG42594 + chrX_7_4900001 chrX_4900001 RAL-765 1556 chrX 4990042 4990066 chrX 4997256 4997280 roo 5 7214 1.5 3.0 2.2 1.6 7238 chrX 4990042 intron CR44833 - chrX 4993661 intron CR44833 - chrX 4997280 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-765 1557 chrX 5125111 5125141 chrX 5125408 5125438 4 297 0.5 2.0 1.2 1.8 327 chrX 5125111 intron,intron CG15465 +,rg + chrX 5125274 intron,intron CG15465 +,rg + chrX 5125438 intron,intron CG15465 +,rg + chrX_4_5125001 chrX_5125001 RAL-765 1558 chrX 5338722 5338740 chrX 5339975 5339993 jockey 4 1253 1.0 3.5 2.2 1.2 1271 chrX 5338722 intergenic not near genes chrX 5339358 intergenic not near genes chrX 5339993 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-765 1559 chrX 5704688 5704718 chrX 5704774 5704805 12 84 3.5 5.0 4.2 2.3 117 chrX 5704688 exon CG4096 + chrX 5704746 intron CG4096 + chrX 5704805 intron CG4096 + chrX_12_5700001 chrX_5700001 RAL-765 1560 chrX 5786575 5786601 chrX 5786658 5786684 4 83 4.5 1.0 2.8 1.1 109 chrX 5786575 intron CG42699 + chrX 5786630 intron CG42699 + chrX 5786684 intron CG42699 + chrX_4_5785001 chrX_5785001 RAL-765 1561 chrX 5798862 5798887 chrX 5799024 5799048 4 160 0.0 2.5 1.2 1.8 186 chrX 5798862 intergenic not near genes chrX 5798955 intergenic not near genes chrX 5799048 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-765 1562 chrX 5883808 5883833 chrX 5884049 5884074 pogo 7 240 2.5 2.0 2.2 2.2 266 chrX 5883808 intron CR45668 - chrX 5883941 intron CR45668 - chrX 5884074 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-765 1563 chrX 5884160 5884187 chrX 5884401 5884428 pogo 5 241 3.0 0.0 1.5 2.0 268 chrX 5884160 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884428 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-765 1564 chrX 5886442 5886477 chrX 5886712 5886747 11 270 2.5 2.5 2.5 3.1 305 chrX 5886442 intron CR45668 - chrX 5886594 intron CR45668 - chrX 5886747 intron CR45668 - chrX_11_5885001 chrX_5885001 RAL-765 1565 chrX 6003292 6003311 chrX 6003373 6003390 9 81 0.0 5.5 2.8 2.4 98 chrX 6003292 intron CR44498 + chrX 6003341 intron CR44498 + chrX 6003390 intron CR44498 + chrX_9_6000001 chrX_6000001 RAL-765 1566 chrX 6053204 6053215 chrX 6053335 6053345 4 129 4.0 3.5 3.8 0.8 141 chrX 6053204 intron CG5921 + chrX 6053274 intron CG5921 + chrX 6053345 intron CG5921 + chrX_4_6050001 chrX_6050001 RAL-765 1567 chrX 6053216 6053231 chrX 6053333 6053362 6 128 1.0 2.5 1.8 2.1 146 chrX 6053216 intron CG5921 + chrX 6053289 intron CG5921 + chrX 6053362 intron CG5921 + chrX_6_6050001 chrX_6050001 RAL-765 1568 chrX 6118698 6118732 chrX 6118780 6118814 7 82 2.5 5.0 3.8 1.5 116 chrX 6118698 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-765 1569 chrX 6171586 6171608 chrX 6179018 6179041 Quasimodo 5 7432 1.5 3.5 2.5 1.4 7455 chrX 6171586 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179041 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-765 1570 chrX 6335215 6335234 chrX 6337724 6337744 Tirant 5 2510 0.5 3.0 1.8 1.8 2529 chrX 6335215 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337744 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-765 1571 chrX 6392876 6392902 chrX 6397641 6397667 Doc 10 4765 4.0 6.0 5.0 1.7 4791 chrX 6392876 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397667 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-765 1572 chrX 6562819 6562848 chrX 6571301 6571330 Tirant 16 8481 8.5 6.5 7.5 1.9 8511 chrX 6562819 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571330 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-765 1573 chrX 6618464 6618475 chrX 6618541 6618552 6 78 4.0 4.5 4.2 1.2 88 chrX 6618464 intron pigs + chrX 6618508 intron pigs + chrX 6618552 intron pigs + chrX_6_6615001 chrX_6615001 RAL-765 1574 chrX 6624710 6624731 chrX 6624819 6624840 4 109 3.0 1.0 2.0 1.3 130 chrX 6624710 intron pigs + chrX 6624775 intron pigs + chrX 6624840 intron pigs + chrX_4_6620001 chrX_6620001 RAL-765 1575 chrX 6737518 6737539 chrX 6737600 6737621 10 81 2.5 1.0 1.8 3.6 103 chrX 6737518 intron CG3168 - chrX 6737570 intron CG3168 - chrX 6737621 intron CG3168 - chrX_10_6735001 chrX_6735001 RAL-765 1576 chrX 6871190 6871219 chrX 6871280 6871308 6 90 2.0 1.0 1.5 2.4 118 chrX 6871190 intron CG43736 + chrX 6871249 intron CG43736 + chrX 6871308 intron CG43736 + chrX_6_6870001 chrX_6870001 RAL-765 1577 chrX 6897585 6897705 chrX 6897663 6897815 10 94 0.5 0.5 0.5 6.7 230 chrX 6897585 intergenic not near genes chrX 6897700 intergenic not near genes chrX 6897815 intergenic not near genes chrX_10_6895001 chrX_6895001 RAL-765 1578 chrX 6930451 6930475 chrX 6930529 6930556 6 78 4.0 1.0 2.5 1.7 105 chrX 6930451 intron CG14431 + chrX 6930504 intron CG14431 + chrX 6930556 intron CG14431 + chrX_6_6930001 chrX_6930001 RAL-765 1579 chrX 7023621 7023634 chrX 7031011 7031023 Tabor 8 7390 2.5 4.0 3.2 1.9 7402 chrX 7023621 intron CG12541 - chrX 7027322 intron CG12541 - chrX 7031023 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-765 1580 chrX 7069804 7069834 chrX 7069884 7069914 4 80 1.5 1.5 1.5 1.6 110 chrX 7069804 5` UTR CG4607 + chrX 7069859 5` UTR CG4607 + chrX 7069914 5` UTR CG4607 + chrX_4_7065001 chrX_7065001 RAL-765 1581 chrX 7570645 7570666 chrX 7570779 7570800 6 134 0.5 1.0 0.8 3.3 155 chrX 7570645 intergenic not near genes chrX 7570722 intergenic not near genes chrX 7570800 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-765 1582 chrX 7702511 7702519 chrX 7702603 7702611 4 92 0.0 4.5 2.2 1.2 100 chrX 7702511 intron CHES-1-like - chrX 7702561 intron CHES-1-like - chrX 7702611 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-765 1583 chrX 7702906 7702930 chrX 7703343 7703363 jockey 9 438 3.0 1.0 2.0 3.0 457 chrX 7702906 intron CHES-1-like - chrX 7703134 intron CHES-1-like - chrX 7703363 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-765 1584 chrX 7784235 7784239 chrX 7784537 7784541 jockey 4 302 7.0 2.0 4.5 0.7 306 chrX 7784235 intergenic not near genes chrX 7784388 intergenic not near genes chrX 7784541 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-765 1585 chrX 7960881 7960908 chrX 7960970 7960997 6 89 1.5 3.0 2.2 1.9 116 chrX 7960881 intron,5` UTR sws -,CR45620 + chrX 7960939 intron sws - chrX 7960997 intron sws - chrX_6_7960001 chrX_7960001 RAL-765 1586 chrX 8031421 8031451 chrX 8035730 8035760 Juan 4 4308 3.5 2.5 3.0 1.0 4339 chrX 8031421 intergenic not near genes chrX 8033590 intergenic not near genes chrX 8035760 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-765 1587 chrX 8163627 8163658 chrX 8163709 8163740 7 82 0.0 4.0 2.0 2.3 113 chrX 8163627 intergenic CR45536 + chrX 8163684 intergenic CR45536 + chrX 8163740 intergenic CR45536 + chrX_7_8160001 chrX_8160001 RAL-765 1588 chrX 8421461 8421491 chrX 8421553 8421583 8 92 2.0 0.5 1.2 3.6 122 chrX 8421461 intron Trf2 + chrX 8421522 intron Trf2 + chrX 8421583 intron Trf2 + chrX_8_8420001 chrX_8420001 RAL-765 1589 chrX 8922326 8922363 chrX 8922760 8922797 jockey 10 434 4.0 2.0 3.0 2.5 471 chrX 8922326 intron rdgA + chrX 8922562 intron rdgA + chrX 8922797 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-765 1590 chrX 8948761 8948780 chrX 8956271 8956290 roo 4 7510 2.5 1.0 1.8 1.4 7529 chrX 8948761 intron rdgA + chrX 8952526 intron rdgA + chrX 8956290 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-765 1591 chrX 9218078 9218083 chrX 9218169 9218174 4 91 4.5 1.0 2.8 1.1 96 chrX 9218078 3` UTR t - chrX 9218126 3` UTR t - chrX 9218174 3` UTR t - chrX_4_9215001 chrX_9215001 RAL-765 1592 chrX 9229909 9229940 chrX 9229989 9230019 8 80 3.0 4.0 3.5 1.8 110 chrX 9229909 intron CG12121 - chrX 9229964 intron CG12121 - chrX 9230019 intron CG12121 - chrX_8_9225001 chrX_9225001 RAL-765 1593 chrX 9375786 9375803 chrX 9375886 9375894 5 99 1.0 4.5 2.8 1.3 108 chrX 9375786 intron mgl - chrX 9375840 intron mgl - chrX 9375894 intron mgl - chrX_5_9375001 chrX_9375001 RAL-765 1594 chrX 9508140 9508166 chrX 9509656 9509684 jockey 8 1518 2.0 2.5 2.2 2.5 1544 chrX 9508140 intron CG32700 - chrX 9508912 intron CG32700 - chrX 9509684 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-765 1595 chrX 9575793 9575824 chrX 9576117 9576148 mdg3 12 323 3.0 2.5 2.8 3.2 355 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_12_9575001 chrX_9575001 RAL-765 1596 chrX 9599174 9599202 chrX 9599251 9599279 11 76 2.5 3.0 2.8 2.9 105 chrX 9599174 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599279 intergenic not near genes chrX_11_9595001 chrX_9595001 RAL-765 1597 chrX 9736528 9736558 chrX 9736751 9736781 8 223 0.0 4.0 2.0 2.7 253 chrX 9736528 intron Sp1 + chrX 9736654 intron Sp1 + chrX 9736781 intron Sp1 + chrX_8_9735001 chrX_9735001 RAL-765 1598 chrX 9791863 9791893 chrX 9791960 9791990 8 97 0.5 4.5 2.5 2.3 127 chrX 9791863 intron CG32698 + chrX 9791926 intron CG32698 + chrX 9791990 intron CG32698 + chrX_8_9790001 chrX_9790001 RAL-765 1599 chrX 10506506 10506525 chrX 10506592 10506607 8 85 4.0 4.0 4.0 1.6 101 chrX 10506506 intron spri - chrX 10506556 intron spri - chrX 10506607 intron spri - chrX_8_10505001 chrX_10505001 RAL-765 1600 chrX 10550338 10550361 chrX 10550411 10550438 5 77 1.0 1.0 1.0 2.5 100 chrX 10550338 intron spri - chrX 10550388 intron spri - chrX 10550438 intron spri - chrX_5_10550001 chrX_10550001 RAL-765 1601 chrX 10550860 10550889 chrX 10552325 10552356 hobo 7 1466 2.0 1.0 1.5 2.8 1496 chrX 10550860 intron spri - chrX 10551608 intron spri - chrX 10552356 intron spri - chrX_7_10550001 chrX_10550001 RAL-765 1602 chrX 10686050 10686080 chrX 10691187 10691217 roo 7 5137 2.0 1.5 1.8 2.5 5167 chrX 10686050 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691217 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-765 1603 chrX 10719135 10719151 chrX 10719219 10719235 8 84 0.0 2.0 1.0 4.0 100 chrX 10719135 intron CG32676 - chrX 10719185 intron CG32676 - chrX 10719235 intron CG32676 - chrX_8_10715001 chrX_10715001 RAL-765 1604 chrX 10977398 10977423 chrX 10977548 10977573 4 150 1.0 1.0 1.0 2.0 175 chrX 10977398 intron CG42339 - chrX 10977486 intron CG42339 - chrX 10977573 intron CG42339 - chrX_4_10975001 chrX_10975001 RAL-765 1605 chrX 11141986 11142063 chrX 11142062 11142139 4 76 0.0 0.0 0.0 4.0 153 chrX 11141986 intergenic CG15199 - chrX 11142062 intergenic CG15199 -,CG15202 + chrX 11142139 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-765 1606 chrX 11194450 11194462 chrX 11201871 11201883 gypsy5 4 7420 0.0 5.5 2.8 1.1 7433 chrX 11194450 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201883 intergenic CG11106 + chrX_4_11195001 chrX_11195001 RAL-765 1607 chrX 11254167 11254200 chrX 11254278 11254311 5 111 2.5 1.0 1.8 1.8 144 chrX 11254167 intron CG44422 - chrX 11254239 intron CG44422 - chrX 11254311 intron CG44422 - chrX_5_11250001 chrX_11250001 RAL-765 1608 chrX 11268569 11268596 chrX 11270062 11270089 hopper2 6 1492 0.5 4.5 2.5 1.7 1520 chrX 11268569 intron CG44422 - chrX 11269329 intron CG44422 - chrX 11270089 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-765 1609 chrX 11279155 11279175 chrX 11279240 11279260 4 85 1.5 0.5 1.0 2.0 105 chrX 11279155 intron CG44422 - chrX 11279208 intron CG44422 - chrX 11279260 intron CG44422 - chrX_4_11275001 chrX_11275001 RAL-765 1610 chrX 11312072 11312090 chrX 11319418 11319442 Stalker2 8 7352 0.5 4.5 2.5 2.3 7370 chrX 11312072 intergenic not near genes chrX 11315757 intergenic not near genes chrX 11319442 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-765 1611 chrX 11424699 11424731 chrX 11424786 11424817 8 85 2.5 1.0 1.8 2.9 118 chrX 11424699 intron Gs2 + chrX 11424758 intron Gs2 + chrX 11424817 intron Gs2 + chrX_8_11420001 chrX_11420001 RAL-765 1612 chrX 11571456 11571485 chrX 11571693 11571726 pogo 21 241 5.0 6.5 5.8 3.1 270 chrX 11571456 3` UTR Kmn1 - chrX 11571591 3` UTR Kmn1 - chrX 11571726 3` UTR Kmn1 - chrX_21_11570001 chrX_11570001 RAL-765 1613 chrX 11568174 11568206 chrX 11573293 11573326 21 5119 44.0 36.0 40.0 0.5 5152 chrX 11568174 exon RpII215 - chrX 11570750 3` UTR,exon CR44266 -,CG11699 + chrX 11573326 exon CG11697 + chrX_21_11570001 chrX_11570001 RAL-765 1614 chrX 11719875 11719894 chrX 11719955 11719974 5 80 3.0 1.0 2.0 1.7 99 chrX 11719875 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719974 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-765 1615 chrX 11936569 11936586 chrX 11936668 11936685 5 97 0.0 3.0 1.5 2.0 116 chrX 11936569 intron cac - chrX 11936627 intron cac - chrX 11936685 intron cac - chrX_5_11935001 chrX_11935001 RAL-765 1616 chrX 12094041 12094060 chrX 12094130 12094138 4 88 2.0 2.0 2.0 1.3 97 chrX 12094041 intron,intron CR43960 +,Ten-a + chrX 12094090 intron,intron CR43960 +,Ten-a + chrX 12094138 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-765 1617 chrX 12168137 12168156 chrX 12173579 12173598 I-element 4 5442 1.5 4.0 2.8 1.1 5461 chrX 12168137 intron Ten-a + chrX 12170868 intron Ten-a + chrX 12173598 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-765 1618 chrX 12301956 12301986 chrX 12303262 12303292 X-element 9 1306 1.5 0.0 0.8 5.0 1336 chrX 12301956 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303292 intron Ten-a + chrX_9_12300001 chrX_12300001 RAL-765 1619 chrX 12375495 12375513 chrX 12375593 12375597 4 94 1.5 5.0 3.2 1.0 102 chrX 12375495 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375597 exon Ir11a - chrX_4_12375001 chrX_12375001 RAL-765 1620 chrX 12859053 12859085 chrX 12859131 12859163 4 78 1.0 0.5 0.8 2.2 110 chrX 12859053 intron Pde9 - chrX 12859108 intron Pde9 - chrX 12859163 intron Pde9 - chrX_4_12855001 chrX_12855001 RAL-765 1621 chrX 12917886 12917914 chrX 12917979 12918007 6 93 1.5 1.0 1.2 2.7 121 chrX 12917886 intron fne + chrX 12917946 intron fne + chrX 12918007 intron fne + chrX_6_12915001 chrX_12915001 RAL-765 1622 chrX 13061360 13061371 chrX 13061470 13061482 4 110 0.5 2.5 1.5 1.6 122 chrX 13061360 intron rad + chrX 13061421 intron rad + chrX 13061482 intron rad + chrX_4_13060001 chrX_13060001 RAL-765 1623 chrX 13146606 13146624 chrX 13146685 13146711 4 86 1.5 1.5 1.5 1.6 105 chrX 13146606 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146711 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-765 1624 chrX 13161692 13161723 chrX 13161769 13161800 4 77 2.0 3.5 2.8 1.1 108 chrX 13161692 3` UTR CG12096 + chrX 13161746 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161800 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-765 1625 chrX 13369670 13369706 chrX 13369833 13369870 12 163 2.0 0.5 1.2 5.5 200 chrX 13369670 intron dmrt11E + chrX 13369770 intron dmrt11E + chrX 13369870 intron dmrt11E + chrX_12_13365001 chrX_13365001 RAL-765 1626 chrX 13937980 13938004 chrX 13941251 13941275 I-element 4 3271 2.0 0.5 1.2 1.8 3295 chrX 13937980 intron mamo - chrX 13939628 intron mamo - chrX 13941275 intron mamo - chrX_4_13935001 chrX_13935001 RAL-765 1627 chrX 13943274 13943302 chrX 13943365 13943393 5 91 0.0 4.0 2.0 1.7 119 chrX 13943274 intron mamo - chrX 13943334 intron mamo - chrX 13943393 intron mamo - chrX_5_13940001 chrX_13940001 RAL-765 1628 chrX 14105034 14105051 chrX 14114184 14114201 roo 6 9150 3.0 4.5 3.8 1.2 9167 chrX 14105034 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-765 1629 chrX 14163796 14163814 chrX 14167044 14167058 4 3246 10.0 13.0 11.5 0.3 3262 chrX 14163796 intergenic not near genes chrX 14165427 intergenic not near genes chrX 14167058 intergenic not near genes chrX_4_14165001 chrX_14165001 RAL-765 1630 chrX 14203637 14203652 chrX 14203726 14203741 4 88 3.5 3.0 3.2 1.0 104 chrX 14203637 intron l(1)G0007 + chrX 14203689 intron l(1)G0007 + chrX 14203741 intron l(1)G0007 + chrX_4_14200001 chrX_14200001 RAL-765 1631 chrX 14209464 14209489 chrX 14209555 14209580 7 91 2.0 2.0 2.0 2.3 116 chrX 14209464 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209580 intron,intron l(1)G0007 +,l(1)G0469 - chrX_7_14205001 chrX_14205001 RAL-765 1632 chrX 14300807 14300834 chrX 14300885 14300912 7 77 2.5 1.5 2.0 2.3 105 chrX 14300807 intergenic not near genes chrX 14300860 intergenic not near genes chrX 14300912 intergenic not near genes chrX_7_14300001 chrX_14300001 RAL-765 1633 chrX 14312783 14312802 chrX 14312864 14312883 4 81 0.5 3.0 1.8 1.4 100 chrX 14312783 intergenic not near genes chrX 14312833 intergenic not near genes chrX 14312883 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-765 1634 chrX 14331772 14331793 chrX 14332106 14332127 4 334 0.5 1.0 0.8 2.2 355 chrX 14331772 intron dpr8 + chrX 14331950 intron dpr8 + chrX 14332127 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-765 1635 chrX 14333291 14333318 chrX 14333373 14333400 6 82 1.5 2.0 1.8 2.1 109 chrX 14333291 intron dpr8 + chrX 14333346 intron dpr8 + chrX 14333400 intron dpr8 + chrX_6_14330001 chrX_14330001 RAL-765 1636 chrX 14589693 14589706 chrX 14589929 14589947 pogo 8 239 1.5 0.5 1.0 4.0 254 chrX 14589693 intron CG9413 - chrX 14589820 intron CG9413 - chrX 14589947 intron CG9413 - chrX_8_14585001 chrX_14585001 RAL-765 1637 chrX 14636473 14636486 chrX 14641913 14641927 I-element 5 5441 2.5 2.5 2.5 1.4 5454 chrX 14636473 intron NetA - chrX 14639200 intron NetA - chrX 14641927 intron NetA - chrX_5_14635001 chrX_14635001 RAL-765 1638 chrX 14778029 14778060 chrX 14782826 14782857 Doc 5 4796 1.0 5.5 3.2 1.2 4828 chrX 14778029 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782857 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-765 1639 chrX 14806772 14806788 chrX 14806860 14806876 5 88 0.0 0.0 0.0 5.0 104 chrX 14806772 intron rut - chrX 14806824 intron rut - chrX 14806876 intron rut - chrX_5_14805001 chrX_14805001 RAL-765 1640 chrX 14808343 14808371 chrX 14808421 14808449 5 77 2.0 0.0 1.0 2.5 106 chrX 14808343 intron rut - chrX 14808396 intron rut - chrX 14808449 intron rut - chrX_5_14805001 chrX_14805001 RAL-765 1641 chrX 14816826 14816860 chrX 14816904 14816938 4 78 0.0 2.0 1.0 2.0 112 chrX 14816826 intron rut - chrX 14816882 intron rut - chrX 14816938 intron rut - chrX_4_14815001 chrX_14815001 RAL-765 1642 chrX 14818794 14818798 chrX 14823993 14824002 copia 4 5203 1.5 3.0 2.2 1.2 5208 chrX 14818794 intron rut - chrX 14821398 intron rut - chrX 14824002 intron rut - chrX_4_14820001 chrX_14820001 RAL-765 1643 chrX 14825358 14825364 chrX 14825434 14825441 4 77 8.5 2.0 5.2 0.6 83 chrX 14825358 intron rut - chrX 14825400 intron rut - chrX 14825441 intron rut - chrX_4_14825001 chrX_14825001 RAL-765 1644 chrX 14861928 14861956 chrX 14862142 14862170 9 214 7.5 10.5 9.0 0.9 242 chrX 14861928 intron Flo2 + chrX 14862049 intron Flo2 + chrX 14862170 intron Flo2 + chrX_9_14860001 chrX_14860001 RAL-765 1645 chrX 14900855 14900879 chrX 14901046 14901071 7 192 1.5 1.0 1.2 3.2 216 chrX 14900855 intron Flo2 + chrX 14900963 intron Flo2 + chrX 14901071 intron Flo2 + chrX_7_14900001 chrX_14900001 RAL-765 1646 chrX 14936859 14936889 chrX 14946116 14946146 roo 5 9257 2.5 3.0 2.8 1.3 9287 chrX 14936859 intron pdgy - chrX 14941502 intron pdgy - chrX 14946146 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-765 1647 chrX 15019130 15019164 chrX 15019228 15019262 11 98 4.0 1.5 2.8 2.9 132 chrX 15019130 intron hiw - chrX 15019196 intron hiw - chrX 15019262 intron hiw - chrX_11_15015001 chrX_15015001 RAL-765 1648 chrX 15256505 15256527 chrX 15256693 15256715 7 187 2.0 2.0 2.0 2.3 210 chrX 15256505 intergenic not near genes chrX 15256610 intergenic not near genes chrX 15256715 intergenic not near genes chrX_7_15255001 chrX_15255001 RAL-765 1649 chrX 15273724 15273735 chrX 15274872 15274898 1360 5 1159 3.5 7.0 5.2 0.8 1174 chrX 15273724 intergenic not near genes chrX 15274311 intergenic not near genes chrX 15274898 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-765 1650 chrX 15435689 15435696 chrX 15436110 15436128 rover 4 429 0.5 4.5 2.5 1.1 439 chrX 15435689 intron Cngl - chrX 15435908 intron Cngl - chrX 15436128 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-765 1651 chrX 15526287 15526322 chrX 15526500 15526535 10 213 3.0 4.0 3.5 2.2 248 chrX 15526287 intron Ac13E - chrX 15526411 intron Ac13E - chrX 15526535 intron Ac13E - chrX_10_15525001 chrX_15525001 RAL-765 1652 chrX 15536680 15536701 chrX 15536787 15536810 8 108 2.0 6.5 4.2 1.5 130 chrX 15536680 intron Ac13E - chrX 15536745 intron Ac13E - chrX 15536810 intron Ac13E - chrX_8_15535001 chrX_15535001 RAL-765 1653 chrX 15596099 15596128 chrX 15596233 15596261 4 134 1.0 1.0 1.0 2.0 162 chrX 15596099 intergenic not near genes chrX 15596180 intergenic not near genes chrX 15596261 intergenic not near genes chrX_4_15595001 chrX_15595001 RAL-765 1654 chrX 15678696 15678733 chrX 15678772 15678810 15 77 1.0 0.5 0.8 8.3 114 chrX 15678696 intergenic not near genes chrX 15678753 intergenic not near genes chrX 15678810 intergenic not near genes chrX_15_15675001 chrX_15675001 RAL-765 1655 chrX 15759507 15759536 chrX 15759583 15759612 4 76 3.0 2.5 2.8 1.1 105 chrX 15759507 intron Graf - chrX 15759560 intron Graf - chrX 15759612 intron Graf - chrX_4_15755001 chrX_15755001 RAL-765 1656 chrX 16004412 16004440 chrX 16004498 16004526 4 86 1.5 2.0 1.8 1.4 114 chrX 16004412 intron vap - chrX 16004469 intron vap - chrX 16004526 intron vap - chrX_4_16000001 chrX_16000001 RAL-765 1657 chrX 16355282 16355301 chrX 16355444 16355463 4 162 2.0 2.0 2.0 1.3 181 chrX 16355282 3` UTR sl + chrX 16355372 3` UTR sl + chrX 16355463 3` UTR sl + chrX_4_16355001 chrX_16355001 RAL-765 1658 chrX 16492645 16492674 chrX 16498222 16498251 mdg3 7 5577 4.0 1.5 2.8 1.8 5606 chrX 16492645 intron para - chrX 16495448 intron para - chrX 16498251 intron para - chrX_7_16495001 chrX_16495001 RAL-765 1659 chrX 16618517 16618551 chrX 16618627 16618660 8 110 2.0 2.0 2.0 2.7 143 chrX 16618517 intron CG9782 - chrX 16618588 intron CG9782 - chrX 16618660 intron CG9782 - chrX_8_16615001 chrX_16615001 RAL-765 1660 chrX 16623493 16623501 chrX 16623579 16623586 4 85 3.5 0.0 1.8 1.4 93 chrX 16623493 intergenic not near genes chrX 16623540 intergenic Rok - chrX 16623586 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-765 1661 chrX 16689632 16689652 chrX 16689718 16689738 5 86 1.5 2.5 2.0 1.7 106 chrX 16689632 intron Sep4 - chrX 16689685 intron Sep4 - chrX 16689738 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-765 1662 chrX 16936006 16936030 chrX 16936422 16936447 jockey 5 417 1.5 0.5 1.0 2.5 441 chrX 16936006 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936447 intron CG4928 + chrX_5_16935001 chrX_16935001 RAL-765 1663 chrX 1053117 1053120 chrX 16983075 16983076 4 15929957 8.0 7.0 7.5 0.5 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-765 1664 chrX 17011973 17011999 chrX 17012055 17012082 6 83 1.0 6.0 3.5 1.3 109 chrX 17011973 intron CG45002 - chrX 17012028 intron CG45002 - chrX 17012082 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-765 1665 chrX 17195208 17195227 chrX 17200294 17200312 flea 5 5085 3.0 2.5 2.8 1.3 5104 chrX 17195208 3` UTR baz + chrX 17197760 3` UTR baz + chrX 17200312 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-765 1666 chrX 17221826 17221860 chrX 17221912 17221946 10 86 0.5 1.5 1.0 5.0 120 chrX 17221826 intron CG5172 + chrX 17221886 intron CG5172 + chrX 17221946 intron CG5172 + chrX_10_17220001 chrX_17220001 RAL-765 1667 chrX 17275527 17275564 chrX 17275606 17275643 8 78 2.5 2.5 2.5 2.3 116 chrX 17275527 intron f + chrX 17275585 intron f + chrX 17275643 intron f + chrX_8_17275001 chrX_17275001 RAL-765 1668 chrX 17282877 17282903 chrX 17282954 17282981 5 78 5.5 0.0 2.8 1.3 104 chrX 17282877 intron CG5445 + chrX 17282929 5` UTR CG5445 + chrX 17282981 intron CG5445 + chrX_5_17280001 chrX_17280001 RAL-765 1669 chrX 17352592 17352618 chrX 17352695 17352721 6 103 0.0 2.0 1.0 3.0 129 chrX 17352592 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352721 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-765 1670 chrX 17443312 17443333 chrX 17443517 17443538 6 205 17.5 2.5 10.0 0.5 226 chrX 17443312 intron CG12994 - chrX 17443425 intron CG12994 - chrX 17443538 intron CG12994 - chrX_6_17440001 chrX_17440001 RAL-765 1671 chrX 17680889 17680923 chrX 17680966 17680999 17 74 0.5 3.5 2.0 5.7 110 chrX 17680889 intron chas - chrX 17680944 intron chas - chrX 17680999 intron chas - chrX_17_17680001 chrX_17680001 RAL-765 1672 chrX 18093067 18093088 chrX 18093363 18093383 5 294 2.0 3.5 2.8 1.3 316 chrX 18093067 intergenic RhoGAP16F +,scu + chrX 18093225 5` UTR RhoGAP16F + chrX 18093383 5` UTR RhoGAP16F + chrX_5_18090001 chrX_18090001 RAL-765 1673 chrX 18126611 18126829 chrX 18126734 18126906 6 85 2.5 0.5 1.5 2.4 295 chrX 18126611 intron CG32553 - chrX 18126758 intron CG32553 - chrX 18126906 intron CG32553 - chrX_6_18125001 chrX_18125001 RAL-765 1674 chrX 18281550 18281569 chrX 18281632 18281651 5 81 6.5 1.5 4.0 1.0 101 chrX 18281550 intron upd3 + chrX 18281600 intron upd3 + chrX 18281651 intron upd3 + chrX_5_18280001 chrX_18280001 RAL-765 1675 chrX 18413864 18413885 chrX 18413943 18413949 4 75 2.5 3.5 3.0 1.0 85 chrX 18413864 intergenic not near genes chrX 18413906 intergenic not near genes chrX 18413949 intergenic not near genes chrX_4_18410001 chrX_18410001 RAL-765 1676 chrX 18429493 18429524 chrX 18434804 18434835 Transpac 6 5311 2.5 2.0 2.2 1.9 5342 chrX 18429493 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434835 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-765 1677 chrX 18467226 18467253 chrX 18467390 18467417 8 164 3.0 3.5 3.2 1.9 191 chrX 18467226 intron CG32547 - chrX 18467322 intron CG32547 - chrX 18467417 intron CG32547 - chrX_8_18465001 chrX_18465001 RAL-765 1678 chrX 18490043 18490057 chrX 18490198 18490211 8 155 2.5 4.5 3.5 1.8 168 chrX 18490043 intergenic CG15046 - chrX 18490127 intergenic not near genes chrX 18490211 intergenic not near genes chrX_8_18490001 chrX_18490001 RAL-765 1679 chrX 18645014 18645047 chrX 18645112 18645145 9 98 1.0 3.0 2.0 3.0 131 chrX 18645014 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645145 intron Rip11 - chrX_9_18645001 chrX_18645001 RAL-765 1680 chrX 18823822 18823824 chrX 18823898 18823900 4 76 4.0 0.0 2.0 1.3 78 chrX 18823822 intron CG42450 + chrX 18823861 intron CG42450 + chrX 18823900 intron CG42450 + chrX_4_18820001 chrX_18820001 RAL-765 1681 chrX 18947501 18947529 chrX 18947594 18947610 8 91 3.0 1.5 2.2 2.5 109 chrX 18947501 intron CG43759 + chrX 18947556 intron CG43759 + chrX 18947610 intron CG43759 + chrX_8_18945001 chrX_18945001 RAL-765 1682 chrX 19014370 19014393 chrX 19014449 19014472 7 79 4.5 4.0 4.2 1.3 102 chrX 19014370 intron CG43759 + chrX 19014421 intron CG43759 + chrX 19014472 intron CG43759 + chrX_7_19010001 chrX_19010001 RAL-765 1683 chrX 19060409 19060437 chrX 19065193 19065221 Doc 11 4784 2.0 3.5 2.8 2.9 4812 chrX 19060409 intron CG14190 + chrX 19062815 intron CG14190 + chrX 19065221 intron CG14190 + chrX_11_19060001 chrX_19060001 RAL-765 1684 chrX 19080324 19080351 chrX 19080429 19080457 7 105 4.0 2.0 3.0 1.8 133 chrX 19080324 intergenic not near genes chrX 19080390 intergenic not near genes chrX 19080457 intergenic not near genes chrX_7_19080001 chrX_19080001 RAL-765 1685 chrX 19099654 19099682 chrX 19099737 19099765 12 83 2.5 1.0 1.8 4.3 111 chrX 19099654 intergenic not near genes chrX 19099710 intergenic not near genes chrX 19099765 intergenic not near genes chrX_12_19095001 chrX_19095001 RAL-765 1686 chrX 19124445 19124452 chrX 19124527 19124540 4 86 0.5 2.0 1.2 1.8 95 chrX 19124445 intergenic CG15882 - chrX 19124492 intergenic CG15882 - chrX 19124540 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-765 1687 chrX 19125690 19125721 chrX 19125819 19125850 10 128 3.0 4.0 3.5 2.2 160 chrX 19125690 intron tgy - chrX 19125770 intron tgy - chrX 19125850 intron tgy - chrX_10_19125001 chrX_19125001 RAL-765 1688 chrX 19136560 19136584 chrX 19143477 19143503 412 6 6919 1.5 3.0 2.2 1.9 6943 chrX 19136560 intergenic not near genes chrX 19140032 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_6_19140001 chrX_19140001 RAL-765 1689 chrX 19170592 19170602 chrX 19170669 19170679 6 77 9.0 7.5 8.2 0.7 87 chrX 19170592 5` UTR Inx5 - chrX 19170636 5` UTR Inx5 - chrX 19170679 5` UTR Inx5 - chrX_6_19170001 chrX_19170001 RAL-765 1690 chrX 13057298 13057300 chrX 19242812 19242814 8 6185514 6.0 5.5 5.8 1.2 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_8_16150001 chrX_16150001 RAL-765 1691 chrX 19280999 19281030 chrX 19281128 19281159 4 129 0.0 1.0 0.5 2.7 160 chrX 19280999 intergenic CG8034 - chrX 19281079 intergenic CG8034 - chrX 19281159 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-765 1692 chrX 19380159 19380184 chrX 19380400 19380424 pogo 6 241 3.0 1.0 2.0 2.0 265 chrX 19380159 intron kek5 + chrX 19380292 intron kek5 + chrX 19380424 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-765 1693 chrX 19500563 19500747 chrX 19500640 19500832 13 80 0.0 3.0 1.5 5.2 269 chrX 19500563 intron,intron CG14200 +,Pfrx + chrX 19500698 intron,intron CG14200 +,Pfrx + chrX 19500832 intron,intron CG14200 +,Pfrx + chrX_13_19500001 chrX_19500001 RAL-765 1694 chrX 19662039 19662057 chrX 19662262 19662277 4 222 1.0 2.5 1.8 1.4 238 chrX 19662039 intron CG14223 - chrX 19662158 intron CG14223 - chrX 19662277 intron CG14223 - chrX_4_19660001 chrX_19660001 RAL-765 1695 chrX 19710073 19710100 chrX 19711859 19711886 S-element 8 1786 3.0 4.5 3.8 1.7 1813 chrX 19710073 intron meso18E - chrX 19710980 intron meso18E - chrX 19711886 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-765 1696 chrX 19744626 19744662 chrX 19744752 19744788 9 125 26.5 27.0 26.8 0.3 162 chrX 19744626 5` UTR,exon CG33932 +,Rpp20 + chrX 19744707 intron,intron CG33932 +,Rpp20 + chrX 19744788 5` UTR,exon CG33932 +,Rpp20 + chrX_9_19740001 chrX_19740001 RAL-765 1697 chrX 19756135 19756150 chrX 19756222 19756237 5 87 1.5 0.5 1.0 2.5 102 chrX 19756135 intron Pmp70 + chrX 19756186 intron Pmp70 + chrX 19756237 intron Pmp70 + chrX_5_19755001 chrX_19755001 RAL-765 1698 chrX 19880385 19880394 chrX 19880504 19880513 4 119 0.0 1.5 0.8 2.2 128 chrX 19880385 intron Hers + chrX 19880449 intron Hers + chrX 19880513 intron Hers + chrX_4_19880001 chrX_19880001 RAL-765 1699 chrX 19897384 19897407 chrX 19897461 19897483 5 76 4.0 2.5 3.2 1.2 99 chrX 19897384 intron Hers + chrX 19897434 intron Hers + chrX 19897483 intron Hers + chrX_5_19895001 chrX_19895001 RAL-765 1700 chrX 19992425 19992432 chrX 19992501 19992508 4 75 5.0 10.0 7.5 0.5 83 chrX 19992425 intergenic not near genes chrX 19992466 intergenic not near genes chrX 19992508 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-765 1701 chrX 19992981 19992993 chrX 19993060 19993072 4 79 2.5 4.0 3.2 1.0 91 chrX 19992981 intergenic not near genes chrX 19993026 intergenic not near genes chrX 19993072 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-765 1702 chrX 20052791 20052809 chrX 20052875 20052893 5 84 1.0 0.5 0.8 2.8 102 chrX 20052791 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052893 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-765 1703 chrX 20052811 20052814 chrX 20052872 20052897 4 77 1.0 0.5 0.8 2.2 86 chrX 20052811 intron Dop2R - chrX 20052854 intron Dop2R - chrX 20052897 intron Dop2R - chrX_4_20050001 chrX_20050001 RAL-765 1704 chrX 20123038 20123060 chrX 20123155 20123177 7 117 2.5 2.5 2.5 2.0 139 chrX 20123038 intron CG34331 + chrX 20123108 intron CG34331 + chrX 20123177 intron CG34331 + chrX_7_20120001 chrX_20120001 RAL-765 1705 chrX 20312886 20312910 chrX 20312964 20312988 9 77 2.0 1.0 1.5 3.6 102 chrX 20312886 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20312988 intron CG1504 - chrX_9_20310001 chrX_20310001 RAL-765 1706 chrX 20343412 20343419 chrX 20343510 20343520 4 100 1.0 4.0 2.5 1.1 108 chrX 20343412 intergenic not near genes chrX 20343466 intergenic not near genes chrX 20343520 intergenic not near genes chrX_4_20340001 chrX_20340001 RAL-765 1707 chrX 20377329 20377347 chrX 20378794 20378814 hobo 5 1465 3.5 4.0 3.8 1.0 1485 chrX 20377329 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378814 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-765 1708 chrX 20499160 20499187 chrX 20499243 20499269 7 83 3.0 5.0 4.0 1.4 109 chrX 20499160 intron RhoGAP19D - chrX 20499214 intron RhoGAP19D - chrX 20499269 intron RhoGAP19D - chrX_7_20495001 chrX_20495001 RAL-765 1709 chrX 20504129 20504155 chrX 20505646 20505676 transib2 4 1520 1.5 3.0 2.2 1.2 1547 chrX 20504129 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505676 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-765 1710 chrX 20710411 20710436 chrX 20710488 20710513 10 76 0.0 3.0 1.5 4.0 102 chrX 20710411 intergenic not near genes chrX 20710462 intergenic not near genes chrX 20710513 intergenic not near genes chrX_10_20710001 chrX_20710001 RAL-765 1711 chrX 20940718 20940753 chrX 20942187 20942222 hobo 12 1468 4.0 4.5 4.2 2.3 1504 chrX 20940718 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942222 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-765 1712 chrX 21020094 21020124 chrX 21020187 21020217 4 93 1.0 0.0 0.5 2.7 123 chrX 21020094 intergenic not near genes chrX 21020156 intergenic not near genes chrX 21020217 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-765 1713 chrX 21064997 21065002 chrX 21065539 21065544 6 542 16.5 16.0 16.2 0.3 547 chrX 21064997 intron,intron bves +,CG32512 - chrX 21065270 intron,intron bves +,CG32512 - chrX 21065544 intron,intron bves +,CG32512 - chrX_6_21065001 chrX_21065001 RAL-765 1714 chrX 21076340 21076357 chrX 21076419 21076436 5 79 0.0 0.0 0.0 5.0 96 chrX 21076340 intron bves + chrX 21076388 intron bves + chrX 21076436 intron bves + chrX_5_21075001 chrX_21075001 RAL-765 1715 chrX 21086133 21086161 chrX 21087162 21087189 jockey 4 1028 0.5 1.0 0.8 2.2 1056 chrX 21086133 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087189 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-765 1716 chrX 21088044 21088070 chrX 21088173 21088201 5 130 2.0 1.0 1.5 2.0 157 chrX 21088044 intergenic not near genes chrX 21088122 intergenic not near genes chrX 21088201 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-765 1717 chrX 21089143 21089179 chrX 21089237 21089273 13 94 3.0 3.5 3.2 3.1 130 chrX 21089143 intergenic not near genes chrX 21089208 intergenic not near genes chrX 21089273 intergenic not near genes chrX_13_21085001 chrX_21085001 RAL-765 1718 chrX 21419215 21419245 chrX 21419300 21419330 6 85 1.0 1.5 1.2 2.7 115 chrX 21419215 intergenic not near genes chrX 21419272 intergenic not near genes chrX 21419330 intergenic not near genes chrX_6_21415001 chrX_21415001 RAL-765 1719 chrX 21428341 21428355 chrX 21428531 21428545 5 190 6.5 0.5 3.5 1.1 204 chrX 21428341 intron CG42343 - chrX 21428443 intron CG42343 - chrX 21428545 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-765 1720 chrX 21455217 21455221 chrX 21455394 21455398 4 178 0.5 0.0 0.2 3.3 181 chrX 21455217 intron CG42343 - chrX 21455308 intron CG42343 - chrX 21455398 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-765 1721 chrX 21458690 21458724 chrX 21464126 21464160 Ivk 6 5436 3.5 3.0 3.2 1.4 5470 chrX 21458690 intergenic not near genes chrX 21461425 intergenic not near genes chrX 21464160 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-765 1722 chrX 21575544 21575559 chrX 21575622 21575638 5 79 0.0 1.0 0.5 3.3 94 chrX 21575544 intergenic not near genes chrX 21575591 intergenic not near genes chrX 21575638 intergenic not near genes chrX_5_21575001 chrX_21575001 RAL-765 1723 chrX 21668274 21668288 chrX 21668344 21668373 4 81 1.5 1.5 1.5 1.6 99 chrX 21668274 intergenic not near genes chrX 21668324 intergenic not near genes chrX 21668373 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-765 1724 chrX 22478877 22478896 chrX 22479010 22479029 7 133 0.0 3.5 1.8 2.5 152 chrX 22478877 intron CG12576 - chrX 22478953 intron CG12576 - chrX 22479029 intron CG12576 - chrX_7_22475001 chrX_22475001 RAL-765 1725 chrX 22660566 22660600 chrX 22660650 22660684 9 82 3.0 1.5 2.2 2.8 118 chrX 22660566 intron CR44997 + chrX 22660625 intron CR44997 + chrX 22660684 intron CR44997 + chrX_9_22660001 chrX_22660001 RAL-765 1726 chrX 22692463 22692489 chrX 22692541 22692567 6 78 0.0 1.0 0.5 4.0 104 chrX 22692463 intron CR44997 + chrX 22692515 intron CR44997 + chrX 22692567 intron CR44997 + chrX_6_22690001 chrX_22690001 RAL-765 1727 chrX 22697497 22697522 chrX 22701793 22701819 Juan 4 4297 3.0 2.5 2.8 1.1 4322 chrX 22697497 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701819 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-765 1728 chrX 22798772 22798801 chrX 22798889 22798917 8 116 1.5 3.5 2.5 2.3 145 chrX 22798772 intergenic not near genes chrX 22798844 intergenic not near genes chrX 22798917 intergenic not near genes chrX_8_22795001 chrX_22795001 RAL-765 1729 chrX 22895727 22895754 chrX 22895843 22895872 6 115 3.5 1.0 2.2 1.9 145 chrX 22895727 intergenic not near genes chrX 22895800 intergenic not near genes chrX 22895872 intergenic not near genes chrX_6_22895001 chrX_22895001 RAL-765 1730 chrX 23019129 23019141 chrX 23019207 23019219 4 78 0.0 0.5 0.2 3.3 90 chrX 23019129 intergenic not near genes chrX 23019174 intergenic not near genes chrX 23019219 intergenic not near genes chrX_4_23015001 chrX_23015001 RAL-765 1731 chrY 975796 975818 chrY 975876 975925 8 87 90.0 90.5 90.2 0.1 129 chrY 975796 intergenic not near genes chrY 975860 intergenic not near genes chrY 975925 intergenic not near genes chrY_8_975001 chrY_975001 RAL-765