SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47457 47489 chr2L 52561 52592 jockey 8 5099 10.0 4.5 7.2 1.0 5135 chr2L 47457 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-761 2 chr2L 62027 62054 chr2L 62285 62311 5 258 27.5 19.5 23.5 0.2 284 chr2L 62027 intron Cda5 - chr2L 62169 intron Cda5 - chr2L 62311 intron Cda5 - chr2L_5_60001 chr2L_60001 RAL-761 3 chr2L 79844 79856 chr2L 80188 80190 6 342 4.0 10.5 7.2 0.7 346 chr2L 79844 intergenic not near genes chr2L 80017 intergenic not near genes chr2L 80190 intergenic not near genes chr2L_6_80001 chr2L_80001 RAL-761 4 chr2L 89714 89747 chr2L 89789 89790 12 71 6.0 2.5 4.2 2.3 76 chr2L 89714 intergenic not near genes chr2L 89752 intergenic not near genes chr2L 89790 intergenic not near genes chr2L_12_85001 chr2L_85001 RAL-761 5 chr2L 297687 297712 chr2L 297787 297810 9 99 3.0 5.0 4.0 1.8 123 chr2L 297687 intergenic Pi3K21B +,Hop + chr2L 297748 intergenic Pi3K21B +,Hop + chr2L 297810 intergenic Pi3K21B +,Hop + chr2L_9_295001 chr2L_295001 RAL-761 6 chr2L 325129 325153 chr2L 325206 325227 4 73 9.0 7.5 8.2 0.4 98 chr2L 325129 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-761 7 chr2L 686924 686952 chr2L 695963 695992 roo 8 9038 0.5 3.5 2.0 2.7 9068 chr2L 686924 intron ds - chr2L 691458 intron ds - chr2L 695992 intron ds - chr2L_8_690001 chr2L_690001 RAL-761 8 chr2L 770469 770492 chr2L 772245 772273 Bari1 5 1775 2.5 2.0 2.2 1.6 1804 chr2L 770469 intergenic not near genes chr2L 771371 intergenic not near genes chr2L 772273 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-761 9 chr2L 842989 842997 chr2L 843340 843347 4 352 34.0 23.5 28.8 0.1 358 chr2L 842989 intron drongo - chr2L 843168 intron drongo - chr2L 843347 intron drongo - chr2L_4_840001 chr2L_840001 RAL-761 10 chr2L 842979 842991 chr2L 843356 843358 4 370 36.0 23.5 29.8 0.1 379 chr2L 842979 intron drongo - chr2L 843168 intron drongo - chr2L 843358 intron drongo - chr2L_4_840001 chr2L_840001 RAL-761 11 chr2L 922464 922493 chr2L 922545 922574 5 81 1.0 5.0 3.0 1.2 110 chr2L 922464 intergenic CG4341 + chr2L 922519 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-761 12 chr2L 927862 927879 chr2L 928013 928031 6 151 2.5 3.5 3.0 1.5 169 chr2L 927862 intron CG4341 + chr2L 927946 intron CG4341 + chr2L 928031 intron CG4341 + chr2L_6_925001 chr2L_925001 RAL-761 13 chr2L 931632 931670 chr2L 931711 931749 5 78 3.5 3.5 3.5 1.1 117 chr2L 931632 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931749 intron CG4341 + chr2L_5_930001 chr2L_930001 RAL-761 14 chr2L 976877 976911 chr2L 984513 984547 roo 10 7636 3.5 0.5 2.0 3.3 7670 chr2L 976877 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_10_980001 chr2L_980001 RAL-761 15 chr2L 1023025 1023037 chr2L 1023095 1023117 9 75 2.5 5.0 3.8 1.9 92 chr2L 1023025 intron IA-2 - chr2L 1023071 intron IA-2 - chr2L 1023117 intron IA-2 - chr2L_9_1020001 chr2L_1020001 RAL-761 16 chr2L 1126681 1126703 chr2L 1126748 1126779 17 73 2.5 3.5 3.0 4.2 98 chr2L 1126681 intron Pino - chr2L 1126730 intron Pino - chr2L 1126779 intron Pino - chr2L_17_1125001 chr2L_1125001 RAL-761 17 chr2L 1188772 1188797 chr2L 1188850 1188876 10 79 2.0 3.5 2.8 2.6 104 chr2L 1188772 intron CG5001 + chr2L 1188824 intron CG5001 + chr2L 1188876 intron CG5001 + chr2L_10_1185001 chr2L_1185001 RAL-761 18 chr2L 1220127 1220160 chr2L 1227593 1227626 blood 6 7465 4.0 2.0 3.0 1.5 7499 chr2L 1220127 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-761 19 chr2L 1289325 1289349 chr2L 1289407 1289428 8 81 4.5 2.5 3.5 1.8 103 chr2L 1289325 intron robo3 + chr2L 1289376 intron robo3 + chr2L 1289428 intron robo3 + chr2L_8_1285001 chr2L_1285001 RAL-761 20 chr2L 1508056 1508265 chr2L 1508139 1508350 6 83 3.0 3.0 3.0 1.5 294 chr2L 1508056 intergenic not near genes chr2L 1508203 intergenic not near genes chr2L 1508350 intergenic not near genes chr2L_6_1505001 chr2L_1505001 RAL-761 21 chr2L 1557151 1557172 chr2L 1557274 1557297 9 125 1.0 3.0 2.0 3.0 146 chr2L 1557151 intron haf + chr2L 1557224 intron haf + chr2L 1557297 intron haf + chr2L_9_1555001 chr2L_1555001 RAL-761 22 chr2L 1570688 1570717 chr2L 1573560 1573589 F-element 9 2872 4.0 2.0 3.0 2.2 2901 chr2L 1570688 intron haf + chr2L 1572138 intron haf + chr2L 1573589 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-761 23 chr2L 1591863 1591893 chr2L 1591947 1591977 9 81 0.5 4.5 2.5 2.6 114 chr2L 1591863 intron haf + chr2L 1591920 intron haf + chr2L 1591977 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-761 24 chr2L 1678980 1678994 chr2L 1686445 1686459 blood 4 7465 2.5 4.5 3.5 0.9 7479 chr2L 1678980 intron chinmo + chr2L 1682720 intron chinmo + chr2L 1686459 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-761 25 chr2L 1711354 1711380 chr2L 1711678 1711696 mdg3 7 323 3.5 3.5 3.5 1.6 342 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711525 3` UTR frtz - chr2L 1711696 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-761 26 chr2L 1721822 1721855 chr2L 1721906 1721939 9 83 0.5 1.5 1.0 4.5 117 chr2L 1721822 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721939 intron Rim2 - chr2L_9_1720001 chr2L_1720001 RAL-761 27 chr2L 1791263 1791283 chr2L 1791420 1791440 8 157 3.5 2.0 2.8 2.1 177 chr2L 1791263 exon Gr22c - chr2L 1791352 exon Gr22c - chr2L 1791440 exon Gr22c - chr2L_8_1790001 chr2L_1790001 RAL-761 28 chr2L 1828401 1828434 chr2L 1828485 1828517 11 82 3.0 0.5 1.8 3.9 116 chr2L 1828401 intergenic not near genes chr2L 1828459 intergenic not near genes chr2L 1828517 intergenic not near genes chr2L_11_1825001 chr2L_1825001 RAL-761 29 chr2L 1849331 1849356 chr2L 1849421 1849447 7 91 1.0 0.0 0.5 4.7 116 chr2L 1849331 intron wry + chr2L 1849389 intron wry + chr2L 1849447 intron wry + chr2L_7_1845001 chr2L_1845001 RAL-761 30 chr2L 1883418 1883447 chr2L 1884000 1884026 6 580 0.5 2.5 1.5 2.4 608 chr2L 1883418 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-761 31 chr2L 1955947 1955983 chr2L 1956254 1956290 15 306 1.5 2.0 1.8 5.4 343 chr2L 1955947 intron erm - chr2L 1956118 intron erm - chr2L 1956290 intron erm - chr2L_15_1955001 chr2L_1955001 RAL-761 32 chr2L 1986608 1986625 chr2L 1986745 1986759 9 136 1.0 5.5 3.2 2.1 151 chr2L 1986608 intron Got2 - chr2L 1986684 intron Got2 - chr2L 1986759 intron Got2 - chr2L_9_1985001 chr2L_1985001 RAL-761 33 chr2L 2049228 2049240 chr2L 2049306 2049322 7 82 0.0 4.0 2.0 2.3 94 chr2L 2049228 intergenic not near genes chr2L 2049275 intergenic not near genes chr2L 2049322 intergenic not near genes chr2L_7_2045001 chr2L_2045001 RAL-761 34 chr2L 2075527 2075544 chr2L 2075613 2075626 7 85 3.5 4.5 4.0 1.4 99 chr2L 2075527 intron dpr3 - chr2L 2075576 intron dpr3 - chr2L 2075626 intron dpr3 - chr2L_7_2075001 chr2L_2075001 RAL-761 35 chr2L 2100375 2100408 chr2L 2109526 2109528 roo 12 9145 2.5 2.5 2.5 3.4 9153 chr2L 2100375 intron dpr3 - chr2L 2104952 intron dpr3 - chr2L 2109528 intron dpr3 - chr2L_12_2100001 chr2L_2100001 RAL-761 36 chr2L 2112119 2112146 chr2L 2119777 2119807 opus 4 7660 2.5 2.0 2.2 1.2 7688 chr2L 2112119 intergenic not near genes chr2L 2115963 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-761 37 chr2L 2133660 2133690 chr2L 2133752 2133780 14 91 2.0 5.5 3.8 2.9 120 chr2L 2133660 intron GlyP + chr2L 2133720 intron GlyP + chr2L 2133780 intron GlyP + chr2L_14_2130001 chr2L_2130001 RAL-761 38 chr2L 2262308 2262339 chr2L 2262385 2262416 10 77 2.0 0.0 1.0 5.0 108 chr2L 2262308 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262416 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-761 39 chr2L 2280114 2280145 chr2L 2280194 2280225 6 78 3.0 0.5 1.8 2.1 111 chr2L 2280114 intergenic CR43753 - chr2L 2280170 intergenic CR43753 - chr2L 2280225 intergenic not near genes chr2L_6_2280001 chr2L_2280001 RAL-761 40 chr2L 2303505 2303533 chr2L 2303588 2303615 10 82 4.5 4.0 4.2 1.9 110 chr2L 2303505 intergenic not near genes chr2L 2303560 intergenic not near genes chr2L 2303615 intergenic not near genes chr2L_10_2300001 chr2L_2300001 RAL-761 41 chr2L 2380430 2380453 chr2L 2380506 2380529 6 76 0.5 1.0 0.8 3.3 99 chr2L 2380430 3` UTR Atxn7 + chr2L 2380480 3` UTR Atxn7 + chr2L 2380529 intergenic Atxn7 + chr2L_6_2380001 chr2L_2380001 RAL-761 42 chr2L 2503730 2503738 chr2L 2504496 2504516 5 776 2.0 2.0 2.0 1.7 786 chr2L 2503730 intergenic not near genes chr2L 2504123 intergenic not near genes chr2L 2504516 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-761 43 chr2L 2565536 2565568 chr2L 2571604 2571636 297 6 6068 3.0 2.5 2.8 1.6 6100 chr2L 2565536 exon Cyp309a2 - chr2L 2568586 intron Cyp309a2 - chr2L 2571636 intron Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-761 44 chr2L 2647891 2647908 chr2L 2648014 2648031 6 122 2.0 1.0 1.5 2.4 140 chr2L 2647891 5` UTR CG43851 + chr2L 2647961 exon CG43851 + chr2L 2648031 exon CG43851 + chr2L_6_2645001 chr2L_2645001 RAL-761 45 chr2L 2661203 2661232 chr2L 2663040 2663068 I-element 7 1831 0.0 1.5 0.8 3.9 1865 chr2L 2661203 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663068 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-761 46 chr2L 2667627 2667656 chr2L 2667706 2667735 12 79 3.5 3.5 3.5 2.7 108 chr2L 2667627 intergenic not near genes chr2L 2667681 intergenic not near genes chr2L 2667735 intergenic not near genes chr2L_12_2665001 chr2L_2665001 RAL-761 47 chr2L 2688845 2688877 chr2L 2692587 2692619 5 3743 23.5 31.0 27.2 0.2 3774 chr2L 2688845 intron CG31690 + chr2L 2690732 intron CG31690 + chr2L 2692619 intron CG31690 + chr2L_5_2690001 chr2L_2690001 RAL-761 48 chr2L 2698870 2698895 chr2L 2698954 2698982 15 87 1.5 2.0 1.8 5.4 112 chr2L 2698870 intron CG31690 + chr2L 2698926 intron CG31690 + chr2L 2698982 intron CG31690 + chr2L_15_2695001 chr2L_2695001 RAL-761 49 chr2L 2715686 2715695 chr2L 2715762 2715768 5 75 6.0 2.5 4.2 1.0 82 chr2L 2715686 intron CG31690 + chr2L 2715727 intron CG31690 + chr2L 2715768 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-761 50 chr2L 2772612 2772629 chr2L 2779196 2779212 297 5 6582 3.0 0.5 1.8 1.8 6600 chr2L 2772612 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779212 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-761 51 chr2L 3073042 3073054 chr2L 3078245 3078257 copia 6 5203 6.5 4.5 5.5 0.9 5215 chr2L 3073042 intron toc - chr2L 3075650 intron toc - chr2L 3078257 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-761 52 chr2L 3092638 3092667 chr2L 3093373 3093403 8 736 2.0 1.5 1.8 2.9 765 chr2L 3092638 intron toc - chr2L 3093020 intron toc - chr2L 3093403 intron toc - chr2L_8_3090001 chr2L_3090001 RAL-761 53 chr2L 3108867 3108894 chr2L 3108944 3108971 10 77 3.0 5.0 4.0 2.0 104 chr2L 3108867 intron toc - chr2L 3108919 intron toc - chr2L 3108971 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-761 54 chr2L 3117404 3117424 chr2L 3117697 3117717 4 290 3.0 1.0 2.0 1.3 313 chr2L 3117404 intron toc - chr2L 3117560 intron toc - chr2L 3117717 intron toc - chr2L_4_3115001 chr2L_3115001 RAL-761 55 chr2L 3192224 3192233 chr2L 3192321 3192340 6 106 3.0 2.5 2.8 1.6 116 chr2L 3192224 intron CG34393 - chr2L 3192282 intron CG34393 - chr2L 3192340 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-761 56 chr2L 3231421 3231449 chr2L 3231519 3231530 10 95 4.0 6.5 5.2 1.6 109 chr2L 3231421 intergenic not near genes chr2L 3231476 intergenic not near genes chr2L 3231530 intergenic not near genes chr2L_10_3230001 chr2L_3230001 RAL-761 57 chr2L 3251495 3251517 chr2L 3259060 3259082 springer 9 7564 2.5 5.5 4.0 1.8 7587 chr2L 3251495 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_9_3255001 chr2L_3255001 RAL-761 58 chr2L 3291241 3291268 chr2L 3291321 3291339 9 79 2.5 3.0 2.8 2.4 98 chr2L 3291241 intergenic CG9664 - chr2L 3291290 3` UTR CG9664 - chr2L 3291339 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-761 59 chr2L 3323256 3323283 chr2L 3323363 3323390 12 107 0.5 2.5 1.5 4.8 134 chr2L 3323256 intergenic CG8837 + chr2L 3323323 intergenic CG8837 + chr2L 3323390 intergenic CG8837 + chr2L_12_3320001 chr2L_3320001 RAL-761 60 chr2L 3438439 3438456 chr2L 3438532 3438549 7 93 1.5 2.0 1.8 2.5 110 chr2L 3438439 intergenic not near genes chr2L 3438494 intergenic not near genes chr2L 3438549 intergenic not near genes chr2L_7_3435001 chr2L_3435001 RAL-761 61 chr2L 3496030 3496051 chr2L 3496111 3496130 7 81 1.0 3.5 2.2 2.2 100 chr2L 3496030 intron tim - chr2L 3496080 intron tim - chr2L 3496130 intron tim - chr2L_7_3495001 chr2L_3495001 RAL-761 62 chr2L 3508351 3508376 chr2L 3508429 3508454 4 78 1.0 1.0 1.0 2.0 103 chr2L 3508351 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-761 63 chr2L 3582882 3582910 chr2L 3582957 3582987 10 77 1.0 3.5 2.2 3.1 105 chr2L 3582882 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582987 intergenic not near genes chr2L_10_3580001 chr2L_3580001 RAL-761 64 chr2L 3649786 3649807 chr2L 3654988 3655009 copia 5 5200 2.5 2.0 2.2 1.6 5223 chr2L 3649786 intron for - chr2L 3652398 intron for - chr2L 3655009 intron for - chr2L_5_3650001 chr2L_3650001 RAL-761 65 chr2L 3656351 3656383 chr2L 3656438 3656470 18 86 2.0 4.0 3.0 4.5 119 chr2L 3656351 intron for - chr2L 3656410 intron for - chr2L 3656470 intron for - chr2L_18_3655001 chr2L_3655001 RAL-761 66 chr2L 3667963 3667978 chr2L 3668129 3668131 4 163 1.5 2.5 2.0 1.3 168 chr2L 3667963 intron CG34340 + chr2L 3668047 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668131 intron,exon CG34340 +,Sfp24Ba - chr2L_4_3665001 chr2L_3665001 RAL-761 67 chr2L 3784702 3784720 chr2L 3786378 3786380 4 1665 24.5 16.5 20.5 0.2 1678 chr2L 3784702 intergenic CG31960 + chr2L 3785541 3` UTR CG31960 + chr2L 3786380 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-761 68 chr2L 3819035 3819059 chr2L 3819116 3819141 9 82 3.0 0.5 1.8 3.2 106 chr2L 3819035 intergenic not near genes chr2L 3819088 intergenic not near genes chr2L 3819141 intergenic not near genes chr2L_9_3815001 chr2L_3815001 RAL-761 69 chr2L 3883492 3883520 chr2L 3883583 3883607 7 92 2.5 4.0 3.2 1.7 115 chr2L 3883492 intron capu - chr2L 3883550 intron capu - chr2L 3883607 intron capu - chr2L_7_3880001 chr2L_3880001 RAL-761 70 chr2L 3891895 3891923 chr2L 3891980 3892008 7 85 3.5 2.5 3.0 1.8 113 chr2L 3891895 intron capu - chr2L 3891952 intron capu - chr2L 3892008 intron capu - chr2L_7_3890001 chr2L_3890001 RAL-761 71 chr2L 3943796 3943820 chr2L 3943887 3943911 5 90 2.5 1.5 2.0 1.7 115 chr2L 3943796 intron fred - chr2L 3943854 intron fred - chr2L 3943911 intron fred - chr2L_5_3940001 chr2L_3940001 RAL-761 72 chr2L 3965631 3965653 chr2L 3965895 3965917 5 263 1.5 1.5 1.5 2.0 286 chr2L 3965631 intron fred - chr2L 3965774 intron fred - chr2L 3965917 intron fred - chr2L_5_3965001 chr2L_3965001 RAL-761 73 chr2L 3997572 3997576 chr2L 3997642 3997647 4 71 0.5 4.0 2.2 1.2 75 chr2L 3997572 intergenic not near genes chr2L 3997610 intergenic not near genes chr2L 3997647 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-761 74 chr2L 4166376 4166408 chr2L 4166459 4166491 8 81 3.0 5.0 4.0 1.6 115 chr2L 4166376 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166491 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-761 75 chr2L 4562871 4562899 chr2L 4562963 4562991 6 92 0.0 0.0 0.0 6.0 120 chr2L 4562871 intron dp - chr2L 4562931 intron dp - chr2L 4562991 intron dp - chr2L_6_4560001 chr2L_4560001 RAL-761 76 chr2L 4601708 4601729 chr2L 4609149 4609170 mdg1 12 7440 4.5 5.5 5.0 2.0 7462 chr2L 4601708 intron dp - chr2L 4605439 intron dp - chr2L 4609170 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-761 77 chr2L 4819503 4819519 chr2L 4819626 4819642 6 122 3.0 6.0 4.5 1.1 139 chr2L 4819503 intergenic not near genes chr2L 4819572 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-761 78 chr2L 4917309 4917345 chr2L 4917399 4917432 11 83 4.0 3.0 3.5 2.4 123 chr2L 4917309 intron hoe1 - chr2L 4917370 intron hoe1 - chr2L 4917432 intron hoe1 - chr2L_11_4915001 chr2L_4915001 RAL-761 79 chr2L 4918172 4918194 chr2L 4923245 4923267 jockey 5 5073 3.5 1.5 2.5 1.4 5095 chr2L 4918172 intron hoe1 - chr2L 4920720 intron hoe1 - chr2L 4923267 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-761 80 chr2L 4953521 4953543 chr2L 4953761 4953784 pogo 7 240 2.5 3.5 3.0 1.8 263 chr2L 4953521 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953784 intergenic Jon25Bi - chr2L_7_4950001 chr2L_4950001 RAL-761 81 chr2L 5147750 5147757 chr2L 5147957 5147985 4 223 1.5 3.0 2.2 1.2 235 chr2L 5147750 intron Msp300 + chr2L 5147868 intron Msp300 + chr2L 5147985 intron Msp300 + chr2L_4_5145001 chr2L_5145001 RAL-761 82 chr2L 5342773 5342800 chr2L 5345153 5345180 Doc 5 2379 2.5 3.0 2.8 1.3 2407 chr2L 5342773 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345180 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-761 83 chr2L 5449724 5449731 chr2L 5449812 5449819 6 89 0.5 0.0 0.2 5.0 95 chr2L 5449724 intergenic not near genes chr2L 5449772 intergenic not near genes chr2L 5449819 intergenic not near genes chr2L_6_5445001 chr2L_5445001 RAL-761 84 chr2L 5582193 5582221 chr2L 5582268 5582296 12 75 1.5 2.0 1.8 4.3 103 chr2L 5582193 intergenic not near genes chr2L 5582244 intergenic not near genes chr2L 5582296 intergenic not near genes chr2L_12_5580001 chr2L_5580001 RAL-761 85 chr2L 5677198 5677220 chr2L 5677296 5677318 6 98 1.0 3.0 2.0 2.0 120 chr2L 5677198 intergenic not near genes chr2L 5677258 intergenic not near genes chr2L 5677318 intergenic not near genes chr2L_6_5675001 chr2L_5675001 RAL-761 86 chr2L 5827708 5827741 chr2L 5836714 5836749 roo 13 9005 2.0 4.0 3.0 3.2 9041 chr2L 5827708 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_13_5830001 chr2L_5830001 RAL-761 87 chr2L 5902113 5902137 chr2L 5902200 5902225 13 87 2.5 4.0 3.2 3.1 112 chr2L 5902113 intergenic not near genes chr2L 5902169 intergenic not near genes chr2L 5902225 intergenic not near genes chr2L_13_5900001 chr2L_5900001 RAL-761 88 chr2L 6067571 6067595 chr2L 6067661 6067685 14 89 0.0 5.0 2.5 4.0 114 chr2L 6067571 3` UTR CG9147 + chr2L 6067628 3` UTR CG9147 + chr2L 6067685 3` UTR CG9150 - chr2L_14_6065001 chr2L_6065001 RAL-761 89 chr2L 6137540 6137545 chr2L 6137635 6137640 4 95 2.5 3.5 3.0 1.0 100 chr2L 6137540 intergenic not near genes chr2L 6137590 intergenic not near genes chr2L 6137640 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-761 90 chr2L 6145074 6145106 chr2L 6145167 6145200 5 94 2.0 3.5 2.8 1.3 126 chr2L 6145074 intergenic CG13991 + chr2L 6145137 intergenic CG13991 + chr2L 6145200 intergenic CG13991 + chr2L_5_6145001 chr2L_6145001 RAL-761 91 chr2L 6185442 6185473 chr2L 6185517 6185550 9 74 1.5 1.0 1.2 4.1 108 chr2L 6185442 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185550 intron CG34380 + chr2L_9_6185001 chr2L_6185001 RAL-761 92 chr2L 6308315 6308339 chr2L 6308398 6308416 4 81 2.0 3.5 2.8 1.1 101 chr2L 6308315 intron Ddr + chr2L 6308366 intron Ddr + chr2L 6308416 intron,3` UTR Ddr +,CG43922 - chr2L_4_6305001 chr2L_6305001 RAL-761 93 chr2L 6371679 6371710 chr2L 6371757 6371788 15 76 2.0 2.5 2.2 4.7 109 chr2L 6371679 intergenic not near genes chr2L 6371734 intergenic not near genes chr2L 6371788 intergenic not near genes chr2L_15_6370001 chr2L_6370001 RAL-761 94 chr2L 6426868 6426886 chr2L 6445128 6445146 roo 7 18260 4.5 7.0 5.8 1.0 18278 chr2L 6426868 3` UTR CG9527 - chr2L 6436007 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-761 95 chr2L 6458579 6458607 chr2L 6458660 6458686 6 80 1.0 1.0 1.0 3.0 107 chr2L 6458579 exon frj + chr2L 6458632 3` UTR frj + chr2L 6458686 3` UTR frj + chr2L_6_6455001 chr2L_6455001 RAL-761 96 chr2L 6544372 6544395 chr2L 6544464 6544487 6 92 3.5 6.5 5.0 1.0 115 chr2L 6544372 intron eya - chr2L 6544430 intron eya - chr2L 6544487 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-761 97 chr2L 6564844 6564868 chr2L 6564937 6564961 8 93 1.5 1.5 1.5 3.2 117 chr2L 6564844 3` UTR CG13766 - chr2L 6564902 3` UTR CG13766 - chr2L 6564961 3` UTR CG13766 - chr2L_8_6560001 chr2L_6560001 RAL-761 98 chr2L 6590090 6590121 chr2L 6590168 6590196 12 75 2.5 2.5 2.5 3.4 106 chr2L 6590090 intron CG11319 - chr2L 6590143 intron CG11319 - chr2L 6590196 intron CG11319 - chr2L_12_6590001 chr2L_6590001 RAL-761 99 chr2L 6626885 6626920 chr2L 6626970 6627005 6 84 3.0 3.0 3.0 1.5 120 chr2L 6626885 intron Oatp26F - chr2L 6626945 intron Oatp26F - chr2L 6627005 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-761 100 chr2L 6740744 6740760 chr2L 6740831 6740847 5 87 0.0 2.0 1.0 2.5 103 chr2L 6740744 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740847 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-761 101 chr2L 6774124 6774143 chr2L 6774205 6774224 6 79 2.0 1.0 1.5 2.4 100 chr2L 6774124 5` UTR CG17378 + chr2L 6774174 5` UTR CG17378 + chr2L 6774224 5` UTR CG17378 + chr2L_6_6770001 chr2L_6770001 RAL-761 102 chr2L 6799535 6799572 chr2L 6799623 6799624 10 84 0.5 0.0 0.2 8.3 89 chr2L 6799535 5` UTR CR43610 + chr2L 6799580 5` UTR CR43610 + chr2L 6799624 intergenic CR43610 +,CG17376 - chr2L_10_6795001 chr2L_6795001 RAL-761 103 chr2L 6850378 6850413 chr2L 6850461 6850495 13 82 2.5 1.0 1.8 4.6 117 chr2L 6850378 intergenic not near genes chr2L 6850436 intergenic not near genes chr2L 6850495 intergenic not near genes chr2L_13_6850001 chr2L_6850001 RAL-761 104 chr2L 7169704 7169955 chr2L 7169785 7170028 13 72 1.0 4.5 2.8 3.4 324 chr2L 7169704 intergenic not near genes chr2L 7169866 intergenic not near genes chr2L 7170028 intergenic not near genes chr2L_13_7165001 chr2L_7165001 RAL-761 105 chr2L 7210139 7210144 chr2L 7210227 7210232 4 88 0.0 6.0 3.0 1.0 93 chr2L 7210139 intron CG13784 - chr2L 7210186 intron CG13784 - chr2L 7210232 intron CG13784 - chr2L_4_7210001 chr2L_7210001 RAL-761 106 chr2L 7210145 7210159 chr2L 7210219 7210233 4 81 0.0 4.5 2.2 1.2 88 chr2L 7210145 intron CG13784 - chr2L 7210189 intron CG13784 - chr2L 7210233 intron CG13784 - chr2L_4_7210001 chr2L_7210001 RAL-761 107 chr2L 7244741 7244756 chr2L 7244866 7244881 7 125 0.0 7.0 3.5 1.6 140 chr2L 7244741 intron Ndae1 - chr2L 7244811 intron Ndae1 - chr2L 7244881 intron Ndae1 - chr2L_7_7240001 chr2L_7240001 RAL-761 108 chr2L 7567934 7567955 chr2L 7568007 7568031 5 74 0.0 1.0 0.5 3.3 97 chr2L 7567934 intron RapGAP1 - chr2L 7567982 intron RapGAP1 - chr2L 7568031 intron RapGAP1 - chr2L_5_7565001 chr2L_7565001 RAL-761 109 chr2L 7657779 7657783 chr2L 7657851 7657861 4 76 2.0 3.0 2.5 1.1 82 chr2L 7657779 intron Slob - chr2L 7657820 intron Slob - chr2L 7657861 intron Slob - chr2L_4_7655001 chr2L_7655001 RAL-761 110 chr2L 7702548 7702568 chr2L 7702640 7702660 5 92 1.0 3.0 2.0 1.7 112 chr2L 7702548 intergenic Tep3 + chr2L 7702604 intergenic Tep3 + chr2L 7702660 intergenic Tep3 + chr2L_5_7700001 chr2L_7700001 RAL-761 111 chr2L 7977091 7977110 chr2L 7984066 7984073 297 8 6973 3.0 2.0 2.5 2.3 6982 chr2L 7977091 intron Snoo - chr2L 7980582 intron Snoo - chr2L 7984073 intron,5` UTR Snoo -,CG7231 + chr2L_8_7980001 chr2L_7980001 RAL-761 112 chr2L 8003037 8003066 chr2L 8003119 8003144 5 81 1.5 2.0 1.8 1.8 107 chr2L 8003037 intron Wwox - chr2L 8003090 intron Wwox - chr2L 8003144 intron Wwox - chr2L_5_8000001 chr2L_8000001 RAL-761 113 chr2L 8120559 8120575 chr2L 8120644 8120660 10 85 5.0 2.0 3.5 2.2 101 chr2L 8120559 exon mon2 - chr2L 8120610 intron mon2 - chr2L 8120660 intron mon2 - chr2L_10_8120001 chr2L_8120001 RAL-761 114 chr2L 8166052 8166065 chr2L 8166137 8166155 6 87 0.5 2.5 1.5 2.4 103 chr2L 8166052 intron Piezo + chr2L 8166104 intron Piezo + chr2L 8166155 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-761 115 chr2L 8244731 8244745 chr2L 8244853 8244867 6 122 2.5 2.0 2.2 1.9 136 chr2L 8244731 intron CG8086 - chr2L 8244799 intron CG8086 - chr2L 8244867 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-761 116 chr2L 8285024 8285034 chr2L 8285100 8285110 5 75 2.5 2.5 2.5 1.4 86 chr2L 8285024 intron Btk29A - chr2L 8285067 intron Btk29A - chr2L 8285110 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-761 117 chr2L 8287331 8287342 chr2L 8287560 8287572 4 230 1.0 6.0 3.5 0.9 241 chr2L 8287331 intron Btk29A - chr2L 8287452 intron Btk29A - chr2L 8287572 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-761 118 chr2L 8507448 8507467 chr2L 8507530 8507532 5 78 0.5 1.5 1.0 2.5 84 chr2L 8507448 intergenic not near genes chr2L 8507490 intergenic not near genes chr2L 8507532 intergenic not near genes chr2L_5_8505001 chr2L_8505001 RAL-761 119 chr2L 8594465 8594498 chr2L 8601519 8601551 297 4 7054 3.5 3.0 3.2 1.0 7086 chr2L 8594465 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601551 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-761 120 chr2L 8612863 8612867 chr2L 8612938 8612943 5 76 2.0 2.5 2.2 1.6 80 chr2L 8612863 intron Sema-1a + chr2L 8612903 intron Sema-1a + chr2L 8612943 intron Sema-1a + chr2L_5_8610001 chr2L_8610001 RAL-761 121 chr2L 8723116 8723142 chr2L 8731492 8731519 Tirant 9 8376 4.5 3.5 4.0 1.8 8403 chr2L 8723116 intron raw - chr2L 8727318 intron raw - chr2L 8731519 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-761 122 chr2L 8892027 8892048 chr2L 8892104 8892126 10 78 3.5 1.0 2.2 3.1 99 chr2L 8892027 3` UTR CG42713 + chr2L 8892076 3` UTR CG42713 + chr2L 8892126 3` UTR CG42713 + chr2L_10_8890001 chr2L_8890001 RAL-761 123 chr2L 8900387 8900413 chr2L 8900465 8900491 6 77 1.0 2.0 1.5 2.4 104 chr2L 8900387 intron CG34398 + chr2L 8900439 intron CG34398 + chr2L 8900491 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-761 124 chr2L 8956225 8956243 chr2L 8956302 8956320 4 77 1.0 0.5 0.8 2.2 95 chr2L 8956225 intron CG31886 - chr2L 8956272 intron CG31886 - chr2L 8956320 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-761 125 chr2L 9000277 9000307 chr2L 9007787 9007817 roo 8 7510 2.5 6.0 4.2 1.5 7540 chr2L 9000277 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-761 126 chr2L 9073266 9073298 chr2L 9073352 9073384 7 85 1.0 6.0 3.5 1.6 118 chr2L 9073266 intergenic not near genes chr2L 9073325 intergenic not near genes chr2L 9073384 intergenic not near genes chr2L_7_9070001 chr2L_9070001 RAL-761 127 chr2L 9077034 9077062 chr2L 9077586 9077614 7 551 2.0 3.5 2.8 1.8 580 chr2L 9077034 intergenic CG12439 + chr2L 9077324 exon CG12439 + chr2L 9077614 exon CG12439 + chr2L_7_9075001 chr2L_9075001 RAL-761 128 chr2L 9084337 9084340 chr2L 16217660 16217660 7 7133321 13.0 24.0 18.5 0.4 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-761 129 chr2L 9093960 9093971 chr2L 9094043 9094054 6 83 1.0 1.5 1.2 2.7 94 chr2L 9093960 intergenic not near genes chr2L 9094007 intergenic not near genes chr2L 9094054 intergenic not near genes chr2L_6_9090001 chr2L_9090001 RAL-761 130 chr2L 9114369 9114394 chr2L 9114509 9114534 8 140 2.0 5.0 3.5 1.8 165 chr2L 9114369 intergenic not near genes chr2L 9114452 intergenic not near genes chr2L 9114534 intergenic not near genes chr2L_8_9110001 chr2L_9110001 RAL-761 131 chr2L 9251145 9251170 chr2L 9251242 9251267 6 92 8.0 3.5 5.8 0.9 122 chr2L 9251145 intergenic aust -,borr - chr2L 9251206 intergenic aust -,borr - chr2L 9251267 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-761 132 chr2L 9264342 9264374 chr2L 9264442 9264474 8 100 3.5 1.0 2.2 2.5 132 chr2L 9264342 intron Ggamma30A + chr2L 9264408 intron Ggamma30A + chr2L 9264474 intron Ggamma30A + chr2L_8_9260001 chr2L_9260001 RAL-761 133 chr2L 9280009 9280019 chr2L 9280102 9280113 5 93 0.5 4.0 2.2 1.6 104 chr2L 9280009 intron Ggamma30A + chr2L 9280061 intron Ggamma30A + chr2L 9280113 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-761 134 chr2L 9285024 9285044 chr2L 9285100 9285101 6 69 3.5 1.5 2.5 1.7 77 chr2L 9285024 intron Ggamma30A + chr2L 9285062 intron Ggamma30A + chr2L 9285101 intron Ggamma30A + chr2L_6_9285001 chr2L_9285001 RAL-761 135 chr2L 9297377 9297405 chr2L 9297454 9297482 16 75 4.5 4.0 4.2 3.1 105 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_16_9295001 chr2L_9295001 RAL-761 136 chr2L 9380246 9380254 chr2L 9380341 9380349 6 95 4.5 4.5 4.5 1.1 103 chr2L 9380246 exon Shawl - chr2L 9380298 intron Shawl - chr2L 9380349 intron Shawl - chr2L_6_9380001 chr2L_9380001 RAL-761 137 chr2L 9385131 9385154 chr2L 9385221 9385244 14 89 2.0 3.0 2.5 4.0 113 chr2L 9385131 intron Shawl - chr2L 9385188 intron Shawl - chr2L 9385244 intron Shawl - chr2L_14_9385001 chr2L_9385001 RAL-761 138 chr2L 9388428 9388450 chr2L 9389045 9389072 7 621 3.0 4.0 3.5 1.6 644 chr2L 9388428 intron,intron Shawl -,Aldh + chr2L 9388750 intron,intron Shawl -,Aldh + chr2L 9389072 intron,intron Shawl -,Aldh + chr2L_7_9385001 chr2L_9385001 RAL-761 139 chr2L 9393506 9393530 chr2L 9396473 9396497 jockey 12 2966 0.5 6.5 3.5 2.7 2991 chr2L 9393506 intron Shawl - chr2L 9395002 intron Shawl - chr2L 9396497 intron Shawl - chr2L_12_9395001 chr2L_9395001 RAL-761 140 chr2L 9466410 9466440 chr2L 9466489 9466520 7 77 2.5 1.5 2.0 2.3 110 chr2L 9466410 intergenic not near genes chr2L 9466465 intergenic not near genes chr2L 9466520 intergenic not near genes chr2L_7_9465001 chr2L_9465001 RAL-761 141 chr2L 9506432 9506459 chr2L 9506582 9506609 5 148 0.0 4.0 2.0 1.7 177 chr2L 9506432 intron CG33298 + chr2L 9506520 intron CG33298 + chr2L 9506609 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-761 142 chr2L 9508735 9508758 chr2L 9508852 9508874 7 116 9.0 1.5 5.2 1.1 139 chr2L 9508735 intron CG33298 + chr2L 9508804 intron CG33298 + chr2L 9508874 intron CG33298 + chr2L_7_9505001 chr2L_9505001 RAL-761 143 chr2L 9677773 9677805 chr2L 9678406 9678438 9 632 3.5 1.0 2.2 2.8 665 chr2L 9677773 intergenic not near genes chr2L 9678106 intergenic not near genes chr2L 9678438 intergenic not near genes chr2L_9_9675001 chr2L_9675001 RAL-761 144 chr2L 9687270 9687293 chr2L 9687353 9687375 8 81 3.0 2.5 2.8 2.1 105 chr2L 9687270 intron Pka-C1 - chr2L 9687322 intron Pka-C1 - chr2L 9687375 intron Pka-C1 - chr2L_8_9685001 chr2L_9685001 RAL-761 145 chr2L 9881007 9881038 chr2L 9881085 9881100 8 76 3.0 2.5 2.8 2.1 93 chr2L 9881007 intron nAChRalpha6 - chr2L 9881054 intron nAChRalpha6 - chr2L 9881100 intron nAChRalpha6 - chr2L_8_9880001 chr2L_9880001 RAL-761 146 chr2L 9892501 9892534 chr2L 9892577 9892610 10 76 4.0 2.5 3.2 2.4 109 chr2L 9892501 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_10_9890001 chr2L_9890001 RAL-761 147 chr2L 9973736 9973758 chr2L 9980844 9980871 HMS-Beagle 13 7111 4.0 3.0 3.5 2.9 7135 chr2L 9973736 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_13_9975001 chr2L_9975001 RAL-761 148 chr2L 9986353 9986384 chr2L 9986446 9986479 10 91 4.0 2.0 3.0 2.5 126 chr2L 9986353 intron bib + chr2L 9986416 intron bib + chr2L 9986479 intron bib + chr2L_10_9985001 chr2L_9985001 RAL-761 149 chr2L 10105279 10105310 chr2L 10105355 10105383 7 70 1.5 1.5 1.5 2.8 104 chr2L 10105279 intron,intron CG44153 -,CG34109 + chr2L 10105331 intron,intron CG44153 -,CG34109 + chr2L 10105383 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-761 150 chr2L 10136239 10136267 chr2L 10136321 10136349 8 81 2.0 0.5 1.2 3.6 110 chr2L 10136239 intron CG44153 - chr2L 10136294 intron CG44153 - chr2L 10136349 intron CG44153 - chr2L_8_10135001 chr2L_10135001 RAL-761 151 chr2L 10156321 10156352 chr2L 10163791 10163822 blood 8 7468 5.5 5.5 5.5 1.2 7501 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-761 152 chr2L 10169343 10169356 chr2L 10169605 10169618 6 261 2.5 2.0 2.2 1.9 275 chr2L 10169343 intron CG44153 - chr2L 10169480 intron CG44153 - chr2L 10169618 intron CG44153 - chr2L_6_10165001 chr2L_10165001 RAL-761 153 chr2L 10191484 10191494 chr2L 10191566 10191577 4 83 1.5 5.5 3.5 0.9 93 chr2L 10191484 intron,5` UTR Sur -,CG31874 - chr2L 10191530 intron Sur - chr2L 10191577 intron Sur - chr2L_4_10190001 chr2L_10190001 RAL-761 154 chr2L 10490278 10490302 chr2L 10490360 10490376 7 78 5.0 2.0 3.5 1.6 98 chr2L 10490278 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490327 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490376 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_7_10490001 chr2L_10490001 RAL-761 155 chr2L 10592840 10592873 chr2L 10600502 10600535 opus 6 7658 0.5 2.0 1.2 2.7 7695 chr2L 10592840 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600535 intron Trim9 + chr2L_6_10595001 chr2L_10595001 RAL-761 156 chr2L 10704917 10704925 chr2L 10705012 10705020 7 94 8.0 0.0 4.0 1.4 103 chr2L 10704917 intron,3` UTR Lip2 -,CG6415 + chr2L 10704968 intron Lip2 - chr2L 10705020 intron Lip2 - chr2L_7_10700001 chr2L_10700001 RAL-761 157 chr2L 10812070 10812073 chr2L 10812164 10812167 4 94 2.5 1.5 2.0 1.3 97 chr2L 10812070 intron Nos - chr2L 10812118 intron Nos - chr2L 10812167 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-761 158 chr2L 10862846 10862865 chr2L 10864459 10864479 Rt1c 4 1613 3.5 4.0 3.8 0.8 1633 chr2L 10862846 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864479 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-761 159 chr2L 10946952 10946970 chr2L 10956160 10956185 roo 8 9213 4.0 5.0 4.5 1.5 9233 chr2L 10946952 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956185 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-761 160 chr2L 11130500 11130521 chr2L 11130590 11130611 5 90 2.0 1.0 1.5 2.0 111 chr2L 11130500 5` UTR RfC38 - chr2L 11130556 5` UTR RfC38 - chr2L 11130611 5` UTR RfC38 - chr2L_5_11130001 chr2L_11130001 RAL-761 161 chr2L 11169474 11169490 chr2L 11169609 11169625 5 135 3.5 1.0 2.2 1.6 151 chr2L 11169474 intron Ca-beta - chr2L 11169550 intron Ca-beta - chr2L 11169625 intron Ca-beta - chr2L_5_11165001 chr2L_11165001 RAL-761 162 chr2L 11182289 11182296 chr2L 11182395 11182406 4 108 1.5 2.5 2.0 1.3 117 chr2L 11182289 intron Ca-beta - chr2L 11182348 intron Ca-beta - chr2L 11182406 intron Ca-beta - chr2L_4_11180001 chr2L_11180001 RAL-761 163 chr2L 11292374 11292397 chr2L 11292456 11292479 7 80 4.0 1.5 2.8 1.8 105 chr2L 11292374 intergenic not near genes chr2L 11292426 intergenic not near genes chr2L 11292479 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-761 164 chr2L 11298821 11298851 chr2L 11298898 11298927 5 77 1.5 1.5 1.5 2.0 106 chr2L 11298821 intergenic not near genes chr2L 11298874 intergenic not near genes chr2L 11298927 intergenic not near genes chr2L_5_11295001 chr2L_11295001 RAL-761 165 chr2L 11540601 11540614 chr2L 11548002 11548016 Tabor 6 7402 1.5 3.0 2.2 1.9 7415 chr2L 11540601 intergenic not near genes chr2L 11544308 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_6_11540001 chr2L_11540001 RAL-761 166 chr2L 11563642 11563669 chr2L 11568841 11568873 copia 9 5202 4.5 3.5 4.0 1.8 5231 chr2L 11563642 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_9_11565001 chr2L_11565001 RAL-761 167 chr2L 11614070 11614084 chr2L 11615547 11615578 hopper2 5 1485 2.0 2.0 2.0 1.7 1508 chr2L 11614070 intron kek2 + chr2L 11614824 intron kek2 + chr2L 11615578 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-761 168 chr2L 11633174 11633198 chr2L 11633276 11633285 7 99 3.0 3.5 3.2 1.7 111 chr2L 11633174 intergenic not near genes chr2L 11633230 intergenic not near genes chr2L 11633285 intergenic not near genes chr2L_7_11630001 chr2L_11630001 RAL-761 169 chr2L 11713506 11713537 chr2L 11720974 11721005 blood 10 7466 4.0 4.5 4.2 1.9 7499 chr2L 11713506 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-761 170 chr2L 11825707 11825712 chr2L 11825785 11825791 4 78 3.0 0.0 1.5 1.6 84 chr2L 11825707 intron Pde1c - chr2L 11825749 intron Pde1c - chr2L 11825791 intron Pde1c - chr2L_4_11825001 chr2L_11825001 RAL-761 171 chr2L 11826941 11826966 chr2L 11827015 11827044 7 76 2.5 2.0 2.2 2.2 103 chr2L 11826941 intron Pde1c - chr2L 11826992 intron Pde1c - chr2L 11827044 intron Pde1c - chr2L_7_11825001 chr2L_11825001 RAL-761 172 chr2L 12016850 12016884 chr2L 12016935 12016938 7 71 2.0 2.0 2.0 2.3 88 chr2L 12016850 exon CG6734 - chr2L 12016894 exon CG6734 - chr2L 12016938 exon CG6734 - chr2L_7_12015001 chr2L_12015001 RAL-761 173 chr2L 12067328 12067352 chr2L 12074380 12074401 297 4 7051 3.0 1.5 2.2 1.2 7073 chr2L 12067328 intergenic not near genes chr2L 12070864 intergenic not near genes chr2L 12074401 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-761 174 chr2L 12153934 12153960 chr2L 12154010 12154037 4 77 1.5 4.0 2.8 1.1 103 chr2L 12153934 exon CG31760 + chr2L 12153986 intron CG31760 + chr2L 12154037 intron CG31760 + chr2L_4_12150001 chr2L_12150001 RAL-761 175 chr2L 12305410 12305437 chr2L 12305497 12305525 10 87 2.0 3.5 2.8 2.6 115 chr2L 12305410 intron aret + chr2L 12305468 intron aret + chr2L 12305525 intron aret + chr2L_10_12305001 chr2L_12305001 RAL-761 176 chr2L 12365767 12365801 chr2L 12365921 12365954 7 151 2.5 2.5 2.5 2.0 187 chr2L 12365767 intron bru-2 + chr2L 12365860 intron bru-2 + chr2L 12365954 intron bru-2 + chr2L_7_12365001 chr2L_12365001 RAL-761 177 chr2L 12487888 12487919 chr2L 12487967 12488000 11 79 3.5 3.5 3.5 2.4 112 chr2L 12487888 intron bun - chr2L 12487944 intron bun - chr2L 12488000 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-761 178 chr2L 12518533 12518562 chr2L 12518792 12518821 9 259 4.0 2.5 3.2 2.1 288 chr2L 12518533 intron bun - chr2L 12518677 intron bun - chr2L 12518821 intron bun - chr2L_9_12515001 chr2L_12515001 RAL-761 179 chr2L 12558326 12558341 chr2L 12565454 12565470 HMS-Beagle 6 7128 1.0 1.0 1.0 3.0 7144 chr2L 12558326 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565470 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-761 180 chr2L 12689572 12689574 chr2L 12689644 12689660 4 79 1.5 2.5 2.0 1.3 88 chr2L 12689572 intergenic not near genes chr2L 12689616 intergenic not near genes chr2L 12689660 intergenic not near genes chr2L_4_12685001 chr2L_12685001 RAL-761 181 chr2L 12731054 12731089 chr2L 12735821 12735856 F-element 8 4767 1.5 2.5 2.0 2.7 4802 chr2L 12731054 intron MRP + chr2L 12733455 intron MRP + chr2L 12735856 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-761 182 chr2L 12736671 12736679 chr2L 12736747 12736755 4 76 7.0 3.0 5.0 0.7 84 chr2L 12736671 intron MRP + chr2L 12736713 intron MRP + chr2L 12736755 intron MRP + chr2L_4_12735001 chr2L_12735001 RAL-761 183 chr2L 12736691 12736702 chr2L 12736745 12736778 6 69 4.5 2.5 3.5 1.3 87 chr2L 12736691 intron MRP + chr2L 12736734 intron MRP + chr2L 12736778 intron MRP + chr2L_6_12735001 chr2L_12735001 RAL-761 184 chr2L 12739173 12739205 chr2L 12743954 12743986 Doc 12 4781 1.0 3.0 2.0 4.0 4813 chr2L 12739173 exon MRP + chr2L 12741580 intron MRP + chr2L 12743986 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-761 185 chr2L 12751310 12751337 chr2L 12751393 12751420 8 83 2.5 4.0 3.2 1.9 110 chr2L 12751310 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-761 186 chr2L 12844374 12844377 chr2L 12844668 12844673 4 295 2.5 6.5 4.5 0.7 299 chr2L 12844374 intergenic not near genes chr2L 12844524 intergenic not near genes chr2L 12844673 intergenic not near genes chr2L_4_12840001 chr2L_12840001 RAL-761 187 chr2L 12861696 12861727 chr2L 12863160 12863173 hobo 13 1463 3.5 0.5 2.0 4.3 1477 chr2L 12861696 intergenic not near genes chr2L 12862434 intergenic not near genes chr2L 12863173 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-761 188 chr2L 12898871 12898887 chr2L 12898956 12898972 5 84 1.0 3.5 2.2 1.6 101 chr2L 12898871 intergenic not near genes chr2L 12898922 intergenic not near genes chr2L 12898972 intergenic not near genes chr2L_5_12895001 chr2L_12895001 RAL-761 189 chr2L 12933851 12933878 chr2L 12941318 12941344 blood 6 7462 4.5 1.0 2.8 1.6 7493 chr2L 12933851 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941344 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-761 190 chr2L 12946785 12946795 chr2L 12946877 12946886 4 92 0.0 0.0 0.0 4.0 101 chr2L 12946785 intergenic not near genes chr2L 12946836 intergenic not near genes chr2L 12946886 intergenic not near genes chr2L_4_12945001 chr2L_12945001 RAL-761 191 chr2L 13152227 13152259 chr2L 13152305 13152337 14 76 6.0 1.5 3.8 2.9 110 chr2L 13152227 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_14_13150001 chr2L_13150001 RAL-761 192 chr2L 13155179 13155197 chr2L 13155497 13155512 4 315 0.0 1.5 0.8 2.2 333 chr2L 13155179 intergenic not near genes chr2L 13155346 intergenic not near genes chr2L 13155512 intergenic not near genes chr2L_4_13155001 chr2L_13155001 RAL-761 193 chr2L 13241958 13241968 chr2L 13244342 13244351 BS 5 2384 3.0 4.0 3.5 1.1 2393 chr2L 13241958 5` UTR CR45330 + chr2L 13243154 intron CR45330 + chr2L 13244351 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-761 194 chr2L 13405663 13405680 chr2L 13410460 13410477 Doc 4 4797 3.0 7.0 5.0 0.7 4814 chr2L 13405663 exon CG7110 + chr2L 13408070 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-761 195 chr2L 13421128 13421147 chr2L 13421205 13421220 4 76 2.0 4.5 3.2 1.0 92 chr2L 13421128 intron CG42784 + chr2L 13421174 intron CG42784 + chr2L 13421220 intron CG42784 + chr2L_4_13420001 chr2L_13420001 RAL-761 196 chr2L 13449465 13449495 chr2L 13456901 13456931 Quasimodo 9 7436 4.5 2.5 3.5 2.0 7466 chr2L 13449465 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456931 intron CG42784 + chr2L_9_13450001 chr2L_13450001 RAL-761 197 chr2L 13481456 13481475 chr2L 13482063 13482082 jockey 5 607 3.5 10.0 6.8 0.6 626 chr2L 13481456 intron CG42784 + chr2L 13481769 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-761 198 chr2L 13587319 13587334 chr2L 13588394 13588409 4 1075 4.5 2.0 3.2 1.0 1090 chr2L 13587319 intron kuz + chr2L 13587864 intron kuz + chr2L 13588409 intron kuz + chr2L_4_13585001 chr2L_13585001 RAL-761 199 chr2L 13618042 13618075 chr2L 13618133 13618147 20 88 2.5 3.0 2.8 5.3 105 chr2L 13618042 intron kuz + chr2L 13618094 intron kuz + chr2L 13618147 intron kuz + chr2L_20_13615001 chr2L_13615001 RAL-761 200 chr2L 13692157 13692186 chr2L 13692233 13692262 12 76 2.0 3.0 2.5 3.4 105 chr2L 13692157 intron CG31814 - chr2L 13692210 intron CG31814 - chr2L 13692262 intron CG31814 - chr2L_12_13690001 chr2L_13690001 RAL-761 201 chr2L 13761808 13761835 chr2L 13762917 13762946 Doc 8 1110 5.5 2.5 4.0 1.6 1138 chr2L 13761808 intron TM9SF4 + chr2L 13762377 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-761 202 chr2L 13800177 13800206 chr2L 13800281 13800310 11 104 1.0 4.5 2.8 2.9 133 chr2L 13800177 intergenic not near genes chr2L 13800244 intergenic not near genes chr2L 13800310 intergenic not near genes chr2L_11_13800001 chr2L_13800001 RAL-761 203 chr2L 13842132 13842163 chr2L 13842216 13842247 4 83 0.5 0.5 0.5 2.7 115 chr2L 13842132 intron CenG1A + chr2L 13842190 intron CenG1A + chr2L 13842247 intron CenG1A + chr2L_4_13840001 chr2L_13840001 RAL-761 204 chr2L 13853084 13853117 chr2L 13862234 13862267 roo 7 9147 1.5 2.0 1.8 2.5 9183 chr2L 13853084 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-761 205 chr2L 13913592 13913604 chr2L 13913705 13913717 5 113 6.0 2.0 4.0 1.0 125 chr2L 13913592 intergenic not near genes chr2L 13913654 intergenic not near genes chr2L 13913717 intergenic not near genes chr2L_5_13910001 chr2L_13910001 RAL-761 206 chr2L 13987215 13987238 chr2L 13987296 13987317 7 80 2.0 3.0 2.5 2.0 102 chr2L 13987215 intron rk - chr2L 13987266 intron rk - chr2L 13987317 intron rk - chr2L_7_13985001 chr2L_13985001 RAL-761 207 chr2L 14064454 14064486 chr2L 14064531 14064550 12 72 2.5 2.5 2.5 3.4 96 chr2L 14064454 intron nAChRalpha5 + chr2L 14064502 intron nAChRalpha5 + chr2L 14064550 intron nAChRalpha5 + chr2L_12_14060001 chr2L_14060001 RAL-761 208 chr2L 14068625 14068634 chr2L 14068682 14068708 4 68 0.0 0.0 0.0 4.0 83 chr2L 14068625 intron nAChRalpha5 + chr2L 14068666 intron nAChRalpha5 + chr2L 14068708 intron nAChRalpha5 + chr2L_4_14065001 chr2L_14065001 RAL-761 209 chr2L 14396199 14396216 chr2L 14398955 14398968 7 2755 11.0 7.5 9.2 0.7 2769 chr2L 14396199 intron elB - chr2L 14397584 intron elB - chr2L 14398968 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-761 210 chr2L 14396030 14396051 chr2L 14399139 14399162 8 3110 18.5 12.0 15.2 0.5 3132 chr2L 14396030 intron elB - chr2L 14397596 intron elB - chr2L 14399162 intron elB - chr2L_8_14395001 chr2L_14395001 RAL-761 211 chr2L 14557251 14557278 chr2L 14557347 14557374 8 96 2.5 3.5 3.0 2.0 123 chr2L 14557251 intergenic not near genes chr2L 14557312 intergenic not near genes chr2L 14557374 intergenic not near genes chr2L_8_14555001 chr2L_14555001 RAL-761 212 chr2L 14588383 14588418 chr2L 14588537 14588568 20 152 3.5 2.5 3.0 5.0 185 chr2L 14588383 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_20_14585001 chr2L_14585001 RAL-761 213 chr2L 14601981 14602002 chr2L 14602063 14602086 7 83 6.0 2.5 4.2 1.3 105 chr2L 14601981 exon osp - chr2L 14602034 intron osp - chr2L 14602086 intron osp - chr2L_7_14600001 chr2L_14600001 RAL-761 214 chr2L 14707214 14707236 chr2L 14707333 14707355 10 117 3.0 1.0 2.0 3.3 141 chr2L 14707214 intergenic not near genes chr2L 14707284 intergenic not near genes chr2L 14707355 intergenic not near genes chr2L_10_14705001 chr2L_14705001 RAL-761 215 chr2L 14747771 14747779 chr2L 14747862 14747870 4 91 0.0 6.0 3.0 1.0 99 chr2L 14747771 intergenic not near genes chr2L 14747820 intergenic not near genes chr2L 14747870 intergenic not near genes chr2L_4_14745001 chr2L_14745001 RAL-761 216 chr2L 14769364 14769386 chr2L 14769523 14769545 5 159 2.5 1.5 2.0 1.7 181 chr2L 14769364 intergenic not near genes chr2L 14769454 intergenic not near genes chr2L 14769545 intergenic not near genes chr2L_5_14765001 chr2L_14765001 RAL-761 217 chr2L 15026031 15026036 chr2L 15026111 15026117 4 81 2.5 6.0 4.2 0.8 86 chr2L 15026031 exon GABA-B-R1 + chr2L 15026074 intron GABA-B-R1 + chr2L 15026117 intron GABA-B-R1 + chr2L_4_15025001 chr2L_15025001 RAL-761 218 chr2L 15026037 15026051 chr2L 15026103 15026131 4 77 1.0 4.0 2.5 1.1 94 chr2L 15026037 exon GABA-B-R1 + chr2L 15026084 intron GABA-B-R1 + chr2L 15026131 intron GABA-B-R1 + chr2L_4_15025001 chr2L_15025001 RAL-761 219 chr2L 15080900 15080934 chr2L 15080993 15081030 4 94 0.5 0.0 0.2 3.3 130 chr2L 15080900 intron CG15270 + chr2L 15080965 intron CG15270 + chr2L 15081030 intron CG15270 + chr2L_4_15080001 chr2L_15080001 RAL-761 220 chr2L 15087756 15087770 chr2L 15087866 15087878 6 108 2.0 2.0 2.0 2.0 122 chr2L 15087756 intron CG15270 + chr2L 15087817 intron CG15270 + chr2L 15087878 intron CG15270 + chr2L_6_15085001 chr2L_15085001 RAL-761 221 chr2L 15226379 15226396 chr2L 15226445 15226472 4 73 2.0 1.0 1.5 1.6 93 chr2L 15226379 intergenic not near genes chr2L 15226426 intergenic not near genes chr2L 15226472 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-761 222 chr2L 15252987 15253002 chr2L 15253065 15253081 6 79 1.0 0.0 0.5 4.0 94 chr2L 15252987 intron dao + chr2L 15253034 intron dao + chr2L 15253081 intron dao + chr2L_6_15250001 chr2L_15250001 RAL-761 223 chr2L 15343537 15343549 chr2L 15343622 15343634 6 85 2.5 0.0 1.2 2.7 97 chr2L 15343537 intergenic not near genes chr2L 15343586 intergenic not near genes chr2L 15343634 intergenic not near genes chr2L_6_15340001 chr2L_15340001 RAL-761 224 chr2L 15371588 15371618 chr2L 15371806 15371812 7 214 1.0 2.5 1.8 2.5 224 chr2L 15371588 intergenic not near genes chr2L 15371700 intergenic not near genes chr2L 15371812 intergenic not near genes chr2L_7_15370001 chr2L_15370001 RAL-761 225 chr2L 15375822 15375838 chr2L 15375934 15375950 4 111 0.5 3.5 2.0 1.3 128 chr2L 15375822 intergenic not near genes chr2L 15375886 intergenic not near genes chr2L 15375950 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-761 226 chr2L 15443334 15443352 chr2L 15443417 15443436 4 84 3.0 1.5 2.2 1.2 102 chr2L 15443334 intergenic not near genes chr2L 15443385 intergenic not near genes chr2L 15443436 intergenic not near genes chr2L_4_15440001 chr2L_15440001 RAL-761 227 chr2L 15510937 15510955 chr2L 15511031 15511049 4 94 8.0 3.5 5.8 0.6 112 chr2L 15510937 intergenic not near genes chr2L 15510993 intergenic not near genes chr2L 15511049 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-761 228 chr2L 15510956 15510965 chr2L 15511029 15511059 6 87 7.0 3.5 5.2 1.0 103 chr2L 15510956 intergenic not near genes chr2L 15511008 intergenic not near genes chr2L 15511059 intergenic not near genes chr2L_6_15510001 chr2L_15510001 RAL-761 229 chr2L 15526016 15526052 chr2L 15526251 15526287 8 235 2.0 4.0 3.0 2.0 271 chr2L 15526016 intergenic not near genes chr2L 15526152 intergenic not near genes chr2L 15526287 intergenic not near genes chr2L_8_15525001 chr2L_15525001 RAL-761 230 chr2L 15586409 15586432 chr2L 15593460 15593484 297 4 7052 4.0 2.0 3.0 1.0 7075 chr2L 15586409 intergenic not near genes chr2L 15589946 intergenic not near genes chr2L 15593484 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-761 231 chr2L 15740678 15740703 chr2L 15740765 15740791 5 88 0.0 1.0 0.5 3.3 113 chr2L 15740678 intron CycE - chr2L 15740734 intron CycE - chr2L 15740791 5` UTR CycE - chr2L_5_15740001 chr2L_15740001 RAL-761 232 chr2L 15806157 15806186 chr2L 15807149 15807178 10 992 14.0 8.5 11.2 0.8 1021 chr2L 15806157 intergenic not near genes chr2L 15806668 intergenic not near genes chr2L 15807178 intergenic CR44602 - chr2L_10_15805001 chr2L_15805001 RAL-761 233 chr2L 15823354 15823372 chr2L 15823430 15823448 5 76 0.5 2.0 1.2 2.3 94 chr2L 15823354 intergenic CR44601 - chr2L 15823401 intergenic CR44601 - chr2L 15823448 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-761 234 chr2L 15933572 15933598 chr2L 15936110 15936122 9 2536 14.0 5.5 9.8 0.8 2550 chr2L 15933572 intron beat-Ib - chr2L 15934847 intron beat-Ib - chr2L 15936122 intron beat-Ib - chr2L_9_15930001 chr2L_15930001 RAL-761 235 chr2L 15956030 15956054 chr2L 15957496 15957497 hobo 4 1461 4.0 2.5 3.2 1.0 1467 chr2L 15956030 intron beat-Ib - chr2L 15956764 intron beat-Ib - chr2L 15957497 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-761 236 chr2L 16017655 16017671 chr2L 16017731 16017745 7 74 3.0 3.0 3.0 1.8 90 chr2L 16017655 intron beat-Ic + chr2L 16017700 intron beat-Ic + chr2L 16017745 intron beat-Ic + chr2L_7_16015001 chr2L_16015001 RAL-761 237 chr2L 16058135 16058139 chr2L 16058274 16058280 4 140 5.0 2.0 3.5 0.9 145 chr2L 16058135 intron beat-Ia + chr2L 16058208 intron beat-Ia + chr2L 16058280 intron beat-Ia + chr2L_4_16055001 chr2L_16055001 RAL-761 238 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 14.5 24.0 19.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-761 239 chr2L 16161593 16161614 chr2L 16161745 16161766 5 151 2.0 2.5 2.2 1.6 173 chr2L 16161593 intergenic not near genes chr2L 16161680 intergenic not near genes chr2L 16161766 intergenic not near genes chr2L_5_16160001 chr2L_16160001 RAL-761 240 chr2L 9084339 9084340 chr2L 16217660 16217660 5 7133321 13.0 24.0 18.5 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-761 241 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 14.5 24.0 19.2 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-761 242 chr2L 16254895 16254915 chr2L 16255154 16255174 8 258 2.5 3.0 2.8 2.1 279 chr2L 16254895 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255174 intron PRL-1 - chr2L_8_16255001 chr2L_16255001 RAL-761 243 chr2L 16280254 16280284 chr2L 16281425 16281447 1360 7 1169 3.0 4.5 3.8 1.5 1193 chr2L 16280254 intron crp - chr2L 16280850 intron crp - chr2L 16281447 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-761 244 chr2L 16375393 16375419 chr2L 16375484 16375509 4 91 2.0 0.0 1.0 2.0 116 chr2L 16375393 intergenic not near genes chr2L 16375451 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-761 245 chr2L 16544650 16544682 chr2L 16544727 16544759 12 77 2.5 1.5 2.0 4.0 109 chr2L 16544650 intergenic CG42389 + chr2L 16544704 intergenic CG42389 + chr2L 16544759 intergenic CG42389 + chr2L_12_16540001 chr2L_16540001 RAL-761 246 chr2L 16582693 16582728 chr2L 16582795 16582799 6 94 2.5 1.5 2.0 2.0 106 chr2L 16582693 intron CG42389 + chr2L 16582746 intron CG42389 + chr2L 16582799 intron CG42389 + chr2L_6_16580001 chr2L_16580001 RAL-761 247 chr2L 16589818 16589828 chr2L 16589908 16589918 4 90 2.0 5.5 3.8 0.8 100 chr2L 16589818 intron CG42389 + chr2L 16589868 intron CG42389 + chr2L 16589918 intron CG42389 + chr2L_4_16585001 chr2L_16585001 RAL-761 248 chr2L 16654708 16654733 chr2L 16654801 16654826 9 92 1.5 3.0 2.2 2.8 118 chr2L 16654708 intron CG42389 + chr2L 16654767 intron CG42389 + chr2L 16654826 intron CG42389 + chr2L_9_16650001 chr2L_16650001 RAL-761 249 chr2L 16952693 16952717 chr2L 16952799 16952825 8 108 0.5 2.0 1.2 3.6 132 chr2L 16952693 intergenic not near genes chr2L 16952759 intergenic not near genes chr2L 16952825 intergenic not near genes chr2L_8_16950001 chr2L_16950001 RAL-761 250 chr2L 16958104 16958121 chr2L 16962892 16962909 Doc 6 4787 1.5 1.0 1.2 2.7 4805 chr2L 16958104 intergenic not near genes chr2L 16960506 intergenic not near genes chr2L 16962909 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-761 251 chr2L 17050032 17050047 chr2L 17050103 17050131 7 78 1.5 3.5 2.5 2.0 99 chr2L 17050032 intergenic not near genes chr2L 17050082 intergenic not near genes chr2L 17050131 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-761 252 chr2L 17052418 17052443 chr2L 17052530 17052555 4 112 0.0 2.0 1.0 2.0 137 chr2L 17052418 intergenic not near genes chr2L 17052486 intergenic not near genes chr2L 17052555 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-761 253 chr2L 17053282 17053303 chr2L 17053692 17053713 10 409 1.0 4.5 2.8 2.6 431 chr2L 17053282 intergenic not near genes chr2L 17053498 intergenic not near genes chr2L 17053713 intergenic not near genes chr2L_10_17050001 chr2L_17050001 RAL-761 254 chr2L 17118686 17118712 chr2L 17118771 17118798 5 84 2.0 1.0 1.5 2.0 112 chr2L 17118686 intergenic not near genes chr2L 17118742 intergenic not near genes chr2L 17118798 intergenic not near genes chr2L_5_17115001 chr2L_17115001 RAL-761 255 chr2L 17122774 17122807 chr2L 17122859 17122873 7 77 1.0 1.0 1.0 3.5 99 chr2L 17122774 intergenic not near genes chr2L 17122824 intergenic CG31784 - chr2L 17122873 intergenic CG31784 - chr2L_7_17120001 chr2L_17120001 RAL-761 256 chr2L 17167570 17167594 chr2L 17167811 17167835 pogo 5 241 2.5 2.5 2.5 1.4 265 chr2L 17167570 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167835 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-761 257 chr2L 17264751 17264775 chr2L 17264830 17264852 5 76 4.0 2.0 3.0 1.2 101 chr2L 17264751 intergenic not near genes chr2L 17264802 intergenic not near genes chr2L 17264852 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-761 258 chr2L 17273200 17273227 chr2L 17277983 17278010 F-element 12 4782 4.0 7.0 5.5 1.8 4810 chr2L 17273200 intergenic not near genes chr2L 17275605 intergenic not near genes chr2L 17278010 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-761 259 chr2L 17292889 17292910 chr2L 17292967 17292988 6 78 1.5 6.5 4.0 1.2 99 chr2L 17292889 intergenic not near genes chr2L 17292938 intergenic not near genes chr2L 17292988 intergenic not near genes chr2L_6_17290001 chr2L_17290001 RAL-761 260 chr2L 17294259 17294280 chr2L 17294567 17294588 5 312 10.5 2.5 6.5 0.7 329 chr2L 17294259 intergenic not near genes chr2L 17294424 intergenic not near genes chr2L 17294588 intergenic not near genes chr2L_5_17290001 chr2L_17290001 RAL-761 261 chr2L 17319121 17319127 chr2L 17319197 17319202 4 76 2.0 3.5 2.8 1.1 81 chr2L 17319121 3` UTR CR45696 - chr2L 17319162 3` UTR CR45696 - chr2L 17319202 3` UTR CR45696 - chr2L_4_17315001 chr2L_17315001 RAL-761 262 chr2L 17319128 17319149 chr2L 17319188 17319202 7 65 2.0 1.5 1.8 2.5 74 chr2L 17319128 3` UTR CR45696 - chr2L 17319165 3` UTR CR45696 - chr2L 17319202 3` UTR CR45696 - chr2L_7_17315001 chr2L_17315001 RAL-761 263 chr2L 17327921 17327924 chr2L 17327998 17328010 4 83 6.5 7.0 6.8 0.5 89 chr2L 17327921 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328010 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-761 264 chr2L 17360022 17360048 chr2L 17360200 17360226 5 178 0.5 0.0 0.2 4.2 204 chr2L 17360022 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360226 intergenic not near genes chr2L_5_17360001 chr2L_17360001 RAL-761 265 chr2L 17819928 17819952 chr2L 17825131 17825155 copia 6 5201 1.0 3.5 2.2 1.9 5227 chr2L 17819928 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-761 266 chr2L 17855499 17855529 chr2L 17855577 17855607 10 78 4.0 1.0 2.5 2.9 108 chr2L 17855499 intron CadN2 - chr2L 17855553 intron CadN2 - chr2L 17855607 intron CadN2 - chr2L_10_17855001 chr2L_17855001 RAL-761 267 chr2L 17911958 17911985 chr2L 17914135 17914163 pogo 8 2178 5.5 1.0 3.2 1.9 2205 chr2L 17911958 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914163 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 RAL-761 268 chr2L 17951948 17951976 chr2L 17953415 17953443 hobo 4 1467 1.0 4.5 2.8 1.1 1495 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953443 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-761 269 chr2L 18051874 18051905 chr2L 18061021 18061052 roo 11 9146 2.0 1.5 1.8 3.9 9178 chr2L 18051874 intron rdo + chr2L 18056463 intron rdo + chr2L 18061052 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-761 270 chr2L 18111251 18111265 chr2L 18111342 18111354 6 90 5.0 3.0 4.0 1.2 103 chr2L 18111251 intergenic not near genes chr2L 18111302 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-761 271 chr2L 18254811 18254840 chr2L 18254911 18254938 5 99 2.5 1.0 1.8 1.8 127 chr2L 18254811 intron CG42750 - chr2L 18254874 intron CG42750 - chr2L 18254938 intron CG42750 - chr2L_5_18250001 chr2L_18250001 RAL-761 272 chr2L 18264069 18264087 chr2L 18264145 18264163 7 76 2.5 3.0 2.8 1.8 94 chr2L 18264069 intron CG42750 - chr2L 18264116 intron CG42750 - chr2L 18264163 intron CG42750 - chr2L_7_18260001 chr2L_18260001 RAL-761 273 chr2L 18303972 18304001 chr2L 18304063 18304092 8 90 2.0 1.0 1.5 3.2 120 chr2L 18303972 intergenic not near genes chr2L 18304032 intergenic not near genes chr2L 18304092 intergenic not near genes chr2L_8_18300001 chr2L_18300001 RAL-761 274 chr2L 18334613 18334641 chr2L 18334698 18334726 5 85 3.0 1.5 2.2 1.6 113 chr2L 18334613 intron Fas3 + chr2L 18334670 intron Fas3 + chr2L 18334726 intron Fas3 + chr2L_5_18330001 chr2L_18330001 RAL-761 275 chr2L 18408027 18408052 chr2L 18412811 18412836 Doc 10 4783 7.0 0.0 3.5 2.2 4809 chr2L 18408027 intergenic not near genes chr2L 18410432 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_10_18410001 chr2L_18410001 RAL-761 276 chr2L 18531875 18531878 chr2L 18531951 18531957 4 78 3.0 0.0 1.5 1.6 82 chr2L 18531875 3` UTR CG10211 + chr2L 18531916 3` UTR CG10211 + chr2L 18531957 3` UTR CG10211 + chr2L_4_18530001 chr2L_18530001 RAL-761 277 chr2L 18538588 18538598 chr2L 18538663 18538678 4 79 0.5 2.5 1.5 1.6 90 chr2L 18538588 intron Pde11 - chr2L 18538633 intron Pde11 - chr2L 18538678 intron Pde11 - chr2L_4_18535001 chr2L_18535001 RAL-761 278 chr2L 18565591 18565604 chr2L 18566005 18566038 7 431 3.0 1.5 2.2 2.2 447 chr2L 18565591 intron Pde11 - chr2L 18565814 intron Pde11 - chr2L 18566038 intron Pde11 - chr2L_7_18565001 chr2L_18565001 RAL-761 279 chr2L 18608512 18608528 chr2L 18609597 18609613 8 1086 28.5 25.5 27.0 0.3 1101 chr2L 18608512 exon CG10333 + chr2L 18609062 exon CG10333 + chr2L 18609613 exon Atac2 - chr2L_8_18605001 chr2L_18605001 RAL-761 280 chr2L 18626886 18626919 chr2L 18627060 18627093 7 174 1.5 1.5 1.5 2.8 207 chr2L 18626886 intron MESR3 + chr2L 18626990 intron MESR3 + chr2L 18627093 intron MESR3 + chr2L_7_18625001 chr2L_18625001 RAL-761 281 chr2L 18717067 18717091 chr2L 18717183 18717207 7 115 4.0 1.0 2.5 2.0 140 chr2L 18717067 intron CG10348 - chr2L 18717137 intron CG10348 - chr2L 18717207 intron CG10348 - chr2L_7_18715001 chr2L_18715001 RAL-761 282 chr2L 18883855 18883889 chr2L 18883933 18883964 8 79 1.0 2.0 1.5 3.2 109 chr2L 18883855 intergenic not near genes chr2L 18883910 intergenic not near genes chr2L 18883964 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-761 283 chr2L 18898396 18898427 chr2L 18898478 18898507 17 80 2.0 1.5 1.8 6.1 111 chr2L 18898396 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898507 intergenic not near genes chr2L_17_18895001 chr2L_18895001 RAL-761 284 chr2L 19070274 19070300 chr2L 19070359 19070393 6 84 4.5 2.5 3.5 1.3 119 chr2L 19070274 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_6_19070001 chr2L_19070001 RAL-761 285 chr2L 19147372 19147401 chr2L 19154407 19154429 297 9 7034 3.0 3.5 3.2 2.1 7057 chr2L 19147372 intron brat + chr2L 19150900 intron brat + chr2L 19154429 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-761 286 chr2L 19241059 19241087 chr2L 19241136 19241165 5 77 2.5 1.5 2.0 1.7 106 chr2L 19241059 intergenic not near genes chr2L 19241112 intergenic not near genes chr2L 19241165 intergenic not near genes chr2L_5_19240001 chr2L_19240001 RAL-761 287 chr2L 19305617 19305633 chr2L 19305715 19305739 4 102 0.5 2.0 1.2 1.8 122 chr2L 19305617 intergenic not near genes chr2L 19305678 intergenic not near genes chr2L 19305739 intergenic not near genes chr2L_4_19305001 chr2L_19305001 RAL-761 288 chr2L 19309622 19309650 chr2L 19309702 19309724 9 78 3.5 2.0 2.8 2.4 102 chr2L 19309622 intergenic not near genes chr2L 19309673 intergenic not near genes chr2L 19309724 intergenic not near genes chr2L_9_19305001 chr2L_19305001 RAL-761 289 chr2L 19316219 19316223 chr2L 19316272 19316298 4 66 2.0 0.0 1.0 2.0 79 chr2L 19316219 intergenic not near genes chr2L 19316258 intergenic not near genes chr2L 19316298 intergenic not near genes chr2L_4_19315001 chr2L_19315001 RAL-761 290 chr2L 19340199 19340232 chr2L 19340276 19340308 7 71 1.0 3.0 2.0 2.3 109 chr2L 19340199 exon dnt - chr2L 19340254 exon dnt - chr2L 19340308 exon dnt - chr2L_7_19340001 chr2L_19340001 RAL-761 291 chr2L 19345013 19345048 chr2L 19357222 19357257 blood 16 12205 3.0 2.5 2.8 4.2 12244 chr2L 19345013 intron dnt - chr2L 19351135 intron dnt - chr2L 19357257 intron dnt - chr2L_16_19350001 chr2L_19350001 RAL-761 292 chr2L 19357553 19357566 chr2L 19357638 19357656 9 88 5.0 5.0 5.0 1.5 103 chr2L 19357553 intron dnt - chr2L 19357604 intron dnt - chr2L 19357656 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-761 293 chr2L 19378342 19378371 chr2L 19378425 19378445 13 81 3.0 4.0 3.5 2.9 103 chr2L 19378342 intergenic not near genes chr2L 19378394 intergenic not near genes chr2L 19378445 intergenic not near genes chr2L_13_19375001 chr2L_19375001 RAL-761 294 chr2L 19441066 19441089 chr2L 19441143 19441166 9 77 5.0 6.0 5.5 1.4 100 chr2L 19441066 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_9_19440001 chr2L_19440001 RAL-761 295 chr2L 19486886 19486912 chr2L 19486965 19486991 4 79 1.5 0.5 1.0 2.0 105 chr2L 19486886 intergenic CG13084 + chr2L 19486938 intergenic CG13084 + chr2L 19486991 intergenic CG13084 +,CG13083 + chr2L_4_19485001 chr2L_19485001 RAL-761 296 chr2L 19560007 19560039 chr2L 19560260 19560291 6 252 1.0 6.0 3.5 1.3 284 chr2L 19560007 exon Tep5 + chr2L 19560149 exon Tep5 + chr2L 19560291 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-761 297 chr2L 19620106 19620119 chr2L 19621094 19621107 jockey 4 988 4.0 6.5 5.2 0.6 1001 chr2L 19620106 intron Lar + chr2L 19620606 intron Lar + chr2L 19621107 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-761 298 chr2L 19620120 19620130 chr2L 19621085 19621101 jockey 4 972 3.5 4.0 3.8 0.8 981 chr2L 19620120 intron Lar + chr2L 19620610 intron Lar + chr2L 19621101 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-761 299 chr2L 19638535 19638572 chr2L 19638621 19638660 14 86 2.5 3.5 3.0 3.5 125 chr2L 19638535 intron Lar + chr2L 19638598 intron Lar + chr2L 19638660 intron Lar + chr2L_14_19635001 chr2L_19635001 RAL-761 300 chr2L 19652568 19652601 chr2L 19674004 19674030 opus 8 21435 2.5 3.0 2.8 2.1 21462 chr2L 19652568 intron Lar + chr2L 19663299 intron Lar + chr2L 19674030 intron Lar + chr2L_8_19660001 chr2L_19660001 RAL-761 301 chr2L 19703535 19703566 chr2L 19712671 19712702 roo 9 9136 4.0 1.0 2.5 2.6 9167 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712702 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-761 302 chr2L 19737358 19737383 chr2L 19740825 19740851 1360 9 3467 5.5 6.0 5.8 1.3 3493 chr2L 19737358 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740851 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-761 303 chr2L 19754871 19754902 chr2L 19754955 19754981 8 81 3.5 4.0 3.8 1.7 110 chr2L 19754871 intron CG10631 - chr2L 19754926 intron CG10631 - chr2L 19754981 intron CG10631 - chr2L_8_19750001 chr2L_19750001 RAL-761 304 chr2L 19762821 19762840 chr2L 19763057 19763082 pogo 5 239 0.5 2.0 1.2 2.3 261 chr2L 19762821 intron fbp - chr2L 19762952 intron fbp - chr2L 19763082 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-761 305 chr2L 19821797 19821818 chr2L 19821873 19821895 8 76 1.5 1.0 1.2 3.6 98 chr2L 19821797 intron sick + chr2L 19821846 intron sick + chr2L 19821895 intron sick + chr2L_8_19820001 chr2L_19820001 RAL-761 306 chr2L 19823265 19823296 chr2L 19823346 19823385 4 82 3.5 0.5 2.0 1.3 120 chr2L 19823265 intron sick + chr2L 19823325 intron sick + chr2L 19823385 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-761 307 chr2L 19824416 19824436 chr2L 19824498 19824519 5 83 1.5 1.5 1.5 2.0 103 chr2L 19824416 intron sick + chr2L 19824468 intron sick + chr2L 19824519 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-761 308 chr2L 19878990 19879018 chr2L 19879199 19879227 7 208 1.5 5.0 3.2 1.7 237 chr2L 19878990 intron sick + chr2L 19879108 intron sick + chr2L 19879227 intron sick + chr2L_7_19875001 chr2L_19875001 RAL-761 309 chr2L 19898963 19898992 chr2L 19899103 19899131 7 137 1.5 1.0 1.2 3.2 168 chr2L 19898963 intron sick + chr2L 19899047 intron sick + chr2L 19899131 intron sick + chr2L_7_19895001 chr2L_19895001 RAL-761 310 chr2L 20005873 20005894 chr2L 20010948 20010970 flea 6 5074 2.0 4.0 3.0 1.5 5097 chr2L 20005873 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010970 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-761 311 chr2L 20372227 20372256 chr2L 20372468 20372497 pogo 7 241 5.0 4.5 4.8 1.2 270 chr2L 20372227 intergenic Ugt37a1 - chr2L 20372362 intergenic Ugt37a1 - chr2L 20372497 exon Ugt37a1 - chr2L_7_20370001 chr2L_20370001 RAL-761 312 chr2L 20393787 20393817 chr2L 20393953 20393964 9 162 2.0 3.0 2.5 2.6 177 chr2L 20393787 intron CG10947 - chr2L 20393876 intron CG10947 - chr2L 20393964 intron CG10947 - chr2L_9_20390001 chr2L_20390001 RAL-761 313 chr2L 20500417 20500445 chr2L 20500496 20500525 11 80 2.5 0.5 1.5 4.4 108 chr2L 20500417 intergenic not near genes chr2L 20500471 intergenic not near genes chr2L 20500525 intergenic not near genes chr2L_11_20500001 chr2L_20500001 RAL-761 314 chr2L 20568667 20568681 chr2L 20569054 20569069 X-element 4 388 5.0 1.0 3.0 1.0 402 chr2L 20568667 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569069 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-761 315 chr2L 20576227 20576249 chr2L 20583694 20583714 blood 7 7467 2.5 1.0 1.8 2.5 7487 chr2L 20576227 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583714 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-761 316 chr2L 20601786 20601815 chr2L 20601864 20601888 8 77 2.5 2.0 2.2 2.5 102 chr2L 20601786 intron CR44909 - chr2L 20601837 intron CR44909 - chr2L 20601888 intron CR44909 - chr2L_8_20600001 chr2L_20600001 RAL-761 317 chr2L 20602718 20602742 chr2L 20602806 20602830 7 88 2.0 1.5 1.8 2.5 112 chr2L 20602718 intron CR44909 - chr2L 20602774 intron CR44909 - chr2L 20602830 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-761 318 chr2L 20672178 20672208 chr2L 20672261 20672291 11 82 4.0 2.0 3.0 2.8 113 chr2L 20672178 intron CG31678 - chr2L 20672234 intron CG31678 - chr2L 20672291 intron CG31678 - chr2L_11_20670001 chr2L_20670001 RAL-761 319 chr2L 20695794 20695829 chr2L 20695882 20695913 6 86 2.5 2.5 2.5 1.7 119 chr2L 20695794 intron Hr38 - chr2L 20695854 intron Hr38 - chr2L 20695913 intron Hr38 - chr2L_6_20695001 chr2L_20695001 RAL-761 320 chr2L 20708784 20708805 chr2L 20708969 20708990 12 185 3.0 6.5 4.8 2.1 206 chr2L 20708784 intron Hr38 - chr2L 20708887 intron Hr38 - chr2L 20708990 intron Hr38 - chr2L_12_20705001 chr2L_20705001 RAL-761 321 chr2L 20901472 20901486 chr2L 20902623 20902642 1360 6 1157 0.5 2.5 1.5 2.4 1170 chr2L 20901472 intron,intron CG43739 -,sky - chr2L 20902057 intron,intron CG43739 -,sky - chr2L 20902642 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-761 322 chr2L 20947432 20947463 chr2L 20947511 20947542 10 78 2.0 2.5 2.2 3.1 110 chr2L 20947432 3` UTR CR44606 - chr2L 20947487 3` UTR CR44606 - chr2L 20947542 3` UTR CR44606 - chr2L_10_20945001 chr2L_20945001 RAL-761 323 chr2L 21020274 21020303 chr2L 21023951 21023980 NOF 8 3677 3.0 1.5 2.2 2.5 3706 chr2L 21020274 intron CG42238 - chr2L 21022127 intron CG42238 - chr2L 21023980 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-761 324 chr2L 21041135 21041162 chr2L 21049396 21049418 Tirant 8 8260 5.0 1.5 3.2 1.9 8283 chr2L 21041135 intron CG42238 - chr2L 21045276 intron CG42238 - chr2L 21049418 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-761 325 chr2L 21119284 21119318 chr2L 21119368 21119402 5 83 0.5 0.5 0.5 3.3 118 chr2L 21119284 intron Nhe2 + chr2L 21119343 intron Nhe2 + chr2L 21119402 intron Nhe2 + chr2L_5_21115001 chr2L_21115001 RAL-761 326 chr2L 21152869 21152879 chr2L 21152963 21152973 4 94 9.0 2.5 5.8 0.6 104 chr2L 21152869 intergenic not near genes chr2L 21152921 intergenic not near genes chr2L 21152973 intergenic not near genes chr2L_4_21150001 chr2L_21150001 RAL-761 327 chr2L 21152881 21152899 chr2L 21152962 21152994 7 89 3.0 2.0 2.5 2.0 113 chr2L 21152881 intergenic not near genes chr2L 21152938 intergenic not near genes chr2L 21152994 intergenic not near genes chr2L_7_21150001 chr2L_21150001 RAL-761 328 chr2L 21246514 21246535 chr2L 21246609 21246612 4 90 3.5 3.0 3.2 1.0 98 chr2L 21246514 intron Hr39 + chr2L 21246563 intron Hr39 + chr2L 21246612 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-761 329 chr2L 21286604 21286619 chr2L 21286683 21286698 4 79 3.0 1.0 2.0 1.3 94 chr2L 21286604 exon Mio - chr2L 21286651 intron Mio - chr2L 21286698 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-761 330 chr2L 21333131 21333164 chr2L 21333228 21333261 6 96 2.0 0.0 1.0 3.0 130 chr2L 21333131 intron dimm + chr2L 21333196 intron dimm + chr2L 21333261 intron dimm + chr2L_6_21330001 chr2L_21330001 RAL-761 331 chr2L 21592592 21592605 chr2L 21592748 21592764 5 158 2.5 5.0 3.8 1.0 172 chr2L 21592592 intergenic not near genes chr2L 21592678 intergenic not near genes chr2L 21592764 intergenic not near genes chr2L_5_21590001 chr2L_21590001 RAL-761 332 chr2L 21597030 21597059 chr2L 21604774 21604796 roo 5 7738 3.0 2.0 2.5 1.4 7766 chr2L 21597030 intergenic not near genes chr2L 21600913 intergenic not near genes chr2L 21604796 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-761 333 chr2L 21748790 21748817 chr2L 21749079 21749106 8 289 1.5 1.0 1.2 3.6 316 chr2L 21748790 intron step - chr2L 21748948 intron step - chr2L 21749106 intron step - chr2L_8_21745001 chr2L_21745001 RAL-761 334 chr2L 21771227 21771255 chr2L 21771334 21771340 11 105 1.0 3.0 2.0 3.7 113 chr2L 21771227 intron CG31612 - chr2L 21771284 intron CG31612 - chr2L 21771340 intron CG31612 - chr2L_11_21770001 chr2L_21770001 RAL-761 335 chr2L 21772003 21772011 chr2L 21772067 21772090 4 75 1.0 1.5 1.2 1.8 87 chr2L 21772003 intron CG31612 - chr2L 21772046 intron CG31612 - chr2L 21772090 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-761 336 chr2L 21836393 21836426 chr2L 21836483 21836516 13 88 0.5 3.5 2.0 4.3 123 chr2L 21836393 3` UTR tsh + chr2L 21836454 3` UTR tsh + chr2L 21836516 3` UTR tsh + chr2L_13_21835001 chr2L_21835001 RAL-761 337 chr2L 21953801 21953824 chr2L 21954702 21954725 8 902 15.5 27.5 21.5 0.4 924 chr2L 21953801 intergenic not near genes chr2L 21954263 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_8_21950001 chr2L_21950001 RAL-761 338 chr2L 21962562 21962579 chr2L 21962648 21962667 7 87 3.0 4.5 3.8 1.5 105 chr2L 21962562 intergenic not near genes chr2L 21962614 intergenic not near genes chr2L 21962667 intergenic not near genes chr2L_7_21960001 chr2L_21960001 RAL-761 339 chr2L 21981683 21981712 chr2L 21990848 21990864 roo 10 9162 4.5 4.0 4.2 1.9 9181 chr2L 21981683 exon CG2528 - chr2L 21986274 intron CG2528 - chr2L 21990864 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-761 340 chr2L 21997577 21997597 chr2L 21997784 21997799 6 206 1.5 1.5 1.5 2.4 222 chr2L 21997577 intergenic not near genes chr2L 21997688 intergenic not near genes chr2L 21997799 intergenic not near genes chr2L_6_21995001 chr2L_21995001 RAL-761 341 chr2L 22001649 22001667 chr2L 22001725 22001743 5 75 0.5 2.0 1.2 2.3 94 chr2L 22001649 intergenic not near genes chr2L 22001696 intergenic not near genes chr2L 22001743 intergenic not near genes chr2L_5_22000001 chr2L_22000001 RAL-761 342 chr2R 529345 529355 chr2R 537956 537980 Max-element 5 8622 1.0 3.0 2.0 1.7 8635 chr2R 529345 intron CG40378 + chr2R 533662 intron CG40378 + chr2R 537980 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-761 343 chr2R 552777 552780 chr2R 553969 553985 1360 5 1205 1.5 1.0 1.2 2.3 1208 chr2R 552777 intron CG40378 + chr2R 553381 intron CG40378 + chr2R 553985 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-761 344 chr2R 1082368 1082385 chr2R 1087126 1087131 Doc 9 4764 3.5 4.5 4.0 1.8 4763 chr2R 1082368 intron rl + chr2R 1084750 intron rl + chr2R 1087131 intron rl + chr2R_9_1080001 chr2R_1080001 RAL-761 345 chr2R 1513950 1513979 chr2R 1514101 1514129 8 151 49.5 54.5 52.0 0.2 179 chr2R 1513950 3` UTR Maf1 - chr2R 1514040 3` UTR Maf1 - chr2R 1514129 3` UTR Maf1 - chr2R_8_1510001 chr2R_1510001 RAL-761 346 chr2R 2498983 2499013 chr2R 2508129 2508131 roo 5 9139 2.0 1.5 1.8 1.8 9148 chr2R 2498983 intron MFS17 - chr2R 2503557 intron MFS17 - chr2R 2508131 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-761 347 chr2R 2591544 2591555 chr2R 2594220 2594227 roo 6 2675 17.0 17.5 17.2 0.3 2683 chr2R 2591544 intergenic not near genes chr2R 2592886 intergenic not near genes chr2R 2594227 intergenic not near genes chr2R_6_2590001 chr2R_2590001 RAL-761 348 chr2R 3144094 3144108 chr2R 3393369 3393383 Doc 5 249277 11.5 5.0 8.2 0.5 249289 chr2R 3144094 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393383 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-761 349 chr2R 3291934 3292103 chr2R 3915102 3915264 4 623166 7.0 19.0 13.0 0.3 623330 chr2R 3291934 intergenic not near genes chr2R 3603599 intergenic not near genes chr2R 3915264 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-761 350 chr2R 3293755 3293761 chr2R 3293824 3293837 4 72 3.5 2.0 2.8 1.1 82 chr2R 3293755 intergenic not near genes chr2R 3293796 intergenic not near genes chr2R 3293837 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-761 351 chr2R 3818932 3818943 chr2R 3819048 3819056 5 115 5.0 1.5 3.2 1.2 124 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819056 intergenic not near genes chr2R_5_3815001 chr2R_3815001 RAL-761 352 chr2R 4916107 4916136 chr2R 4916191 4916220 6 84 3.5 5.0 4.2 1.2 113 chr2R 4916107 intergenic not near genes chr2R 4916164 intergenic not near genes chr2R 4916220 intergenic not near genes chr2R_6_4915001 chr2R_4915001 RAL-761 353 chr2R 5029692 5029719 chr2R 5029773 5029800 8 81 5.0 5.0 5.0 1.3 108 chr2R 5029692 intergenic not near genes chr2R 5029746 intergenic not near genes chr2R 5029800 intergenic not near genes chr2R_8_5025001 chr2R_5025001 RAL-761 354 chr2R 5037283 5037303 chr2R 5037384 5037402 4 98 4.0 2.5 3.2 1.0 119 chr2R 5037283 intergenic not near genes chr2R 5037342 intergenic not near genes chr2R 5037402 intergenic not near genes chr2R_4_5035001 chr2R_5035001 RAL-761 355 chr2R 5043268 5043292 chr2R 5043358 5043373 5 88 4.5 2.5 3.5 1.1 105 chr2R 5043268 intergenic not near genes chr2R 5043320 intergenic not near genes chr2R 5043373 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-761 356 chr2R 5082688 5082706 chr2R 5082764 5082783 4 77 5.5 9.5 7.5 0.5 95 chr2R 5082688 intergenic not near genes chr2R 5082736 intergenic not near genes chr2R 5082783 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-761 357 chr2R 5192727 5192731 chr2R 5192803 5192808 4 76 3.0 3.0 3.0 1.0 81 chr2R 5192727 intron Nipped-A - chr2R 5192768 intron Nipped-A - chr2R 5192808 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-761 358 chr2R 5209779 5209813 chr2R 5210312 5210339 16 529 3.0 1.0 2.0 5.3 560 chr2R 5209779 intron Nipped-A - chr2R 5210059 intron Nipped-A - chr2R 5210339 intron Nipped-A - chr2R_16_5210001 chr2R_5210001 RAL-761 359 chr2R 5301984 5302025 chr2R 5302195 5302219 8 196 0.0 2.0 1.0 4.0 235 chr2R 5301984 intergenic not near genes chr2R 5302102 intergenic not near genes chr2R 5302219 intergenic not near genes chr2R_8_5300001 chr2R_5300001 RAL-761 360 chr2R 5509517 5509540 chr2R 5509613 5509633 4 95 1.0 3.0 2.0 1.3 116 chr2R 5509517 intron CG30438 + chr2R 5509575 intron CG30438 + chr2R 5509633 intron CG30438 + chr2R_4_5505001 chr2R_5505001 RAL-761 361 chr2R 5514941 5514965 chr2R 5515019 5515038 4 76 3.0 1.5 2.2 1.2 97 chr2R 5514941 intron CG30438 + chr2R 5514990 intron CG30438 + chr2R 5515038 intron CG30438 + chr2R_4_5510001 chr2R_5510001 RAL-761 362 chr2R 5540082 5540095 chr2R 5540401 5540414 4 319 3.5 3.0 3.2 1.0 332 chr2R 5540082 intron CG30438 + chr2R 5540248 intron CG30438 + chr2R 5540414 intron CG30438 + chr2R_4_5540001 chr2R_5540001 RAL-761 363 chr2R 5602958 5602991 chr2R 5603061 5603093 13 102 2.0 0.0 1.0 6.5 135 chr2R 5602958 intergenic not near genes chr2R 5603026 intergenic not near genes chr2R 5603093 intergenic Fis1 - chr2R_13_5600001 chr2R_5600001 RAL-761 364 chr2R 5644626 5644656 chr2R 5644707 5644734 8 78 4.0 1.5 2.8 2.1 108 chr2R 5644626 intron CG11665 - chr2R 5644680 intron CG11665 - chr2R 5644734 intron CG11665 - chr2R_8_5640001 chr2R_5640001 RAL-761 365 chr2R 5772547 5772839 chr2R 5772628 5772921 5 104 3.5 0.0 1.8 1.8 374 chr2R 5772547 3` UTR Gp210 + chr2R 5772734 3` UTR Gp210 + chr2R 5772921 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-761 366 chr2R 5869287 5869299 chr2R 5874363 5874375 flea 5 5076 3.5 6.0 4.8 0.9 5088 chr2R 5869287 intergenic not near genes chr2R 5871831 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-761 367 chr2R 5914139 5914150 chr2R 5914429 5914432 4 286 4.0 7.0 5.5 0.6 293 chr2R 5914139 intron CG43366 + chr2R 5914286 intron CG43366 + chr2R 5914432 intron CG43366 + chr2R_4_5910001 chr2R_5910001 RAL-761 368 chr2R 6096721 6096748 chr2R 6101913 6101945 BS 4 5191 4.5 4.5 4.5 0.7 5224 chr2R 6096721 intron EcR - chr2R 6099333 intron EcR - chr2R 6101945 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-761 369 chr2R 6129333 6129355 chr2R 6129411 6129433 7 78 1.5 3.0 2.2 2.2 100 chr2R 6129333 intron EcR - chr2R 6129383 intron EcR - chr2R 6129433 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-761 370 chr2R 6144413 6144436 chr2R 6144496 6144520 4 84 2.0 2.5 2.2 1.2 107 chr2R 6144413 intron EcR - chr2R 6144466 intron EcR - chr2R 6144520 intron EcR - chr2R_4_6140001 chr2R_6140001 RAL-761 371 chr2R 6168206 6168222 chr2R 6168288 6168300 7 81 2.5 2.5 2.5 2.0 94 chr2R 6168206 intron EcR - chr2R 6168253 intron EcR - chr2R 6168300 intron EcR - chr2R_7_6165001 chr2R_6165001 RAL-761 372 chr2R 3998868 3998873 chr2R 6486843 6486848 4 2487976 13.0 51.0 32.0 0.1 2487980 chr2R 3998868 intergenic not near genes chr2R 5242858 intron Nipped-A - chr2R 6486848 intergenic not near genes chr2R_4_5240001 chr2R_5240001 RAL-761 373 chr2R 6494532 6494539 chr2R 6499293 6499301 F-element 4 4762 3.5 2.5 3.0 1.0 4769 chr2R 6494532 intergenic not near genes chr2R 6496916 intergenic not near genes chr2R 6499301 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-761 374 chr2R 6539797 6539827 chr2R 6539878 6539908 4 81 0.5 4.5 2.5 1.1 111 chr2R 6539797 intron jing + chr2R 6539852 intron jing + chr2R 6539908 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-761 375 chr2R 6806795 6806819 chr2R 6806879 6806904 7 82 1.5 2.0 1.8 2.5 109 chr2R 6806795 intergenic not near genes chr2R 6806850 intergenic not near genes chr2R 6806904 intergenic not near genes chr2R_7_6805001 chr2R_6805001 RAL-761 376 chr2R 7181005 7181022 chr2R 7181081 7181096 4 74 1.5 1.0 1.2 1.8 91 chr2R 7181005 intron pk + chr2R 7181050 intron pk + chr2R 7181096 intron pk + chr2R_4_7180001 chr2R_7180001 RAL-761 377 chr2R 7209846 7209866 chr2R 7217594 7217614 roo 11 7748 4.0 5.5 4.8 1.9 7768 chr2R 7209846 intron pk + chr2R 7213730 intron pk + chr2R 7217614 intron pk + chr2R_11_7210001 chr2R_7210001 RAL-761 378 chr2R 7235818 7235852 chr2R 7240910 7240938 jockey 8 5086 0.0 2.0 1.0 4.0 5120 chr2R 7235818 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240938 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-761 379 chr2R 7250733 7250754 chr2R 7250832 7250851 6 96 2.0 7.0 4.5 1.1 118 chr2R 7250733 intergenic Gadd45 + chr2R 7250792 intergenic Gadd45 + chr2R 7250851 intergenic Gadd45 + chr2R_6_7250001 chr2R_7250001 RAL-761 380 chr2R 7262204 7262219 chr2R 7269261 7269280 297 5 7059 1.5 10.5 6.0 0.7 7076 chr2R 7262204 intergenic not near genes chr2R 7265742 intergenic not near genes chr2R 7269280 intergenic not near genes chr2R_5_7265001 chr2R_7265001 RAL-761 381 chr2R 7272266 7272286 chr2R 7272347 7272368 9 80 0.0 3.0 1.5 3.6 102 chr2R 7272266 intergenic Br140 - chr2R 7272317 3` UTR Br140 - chr2R 7272368 3` UTR Br140 - chr2R_9_7270001 chr2R_7270001 RAL-761 382 chr2R 7290191 7290223 chr2R 7290293 7290325 7 102 1.0 1.0 1.0 3.5 134 chr2R 7290191 intron pwn + chr2R 7290258 intron pwn + chr2R 7290325 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-761 383 chr2R 7353385 7353418 chr2R 7353491 7353524 9 106 3.5 4.0 3.8 1.9 139 chr2R 7353385 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353524 intron Dscam1 - chr2R_9_7350001 chr2R_7350001 RAL-761 384 chr2R 7417904 7418166 chr2R 7417990 7418245 4 81 1.0 1.0 1.0 2.0 341 chr2R 7417904 intergenic not near genes chr2R 7418074 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-761 385 chr2R 7434893 7434915 chr2R 7439194 7439216 Juan 4 4301 1.5 2.5 2.0 1.3 4323 chr2R 7434893 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439216 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-761 386 chr2R 7551693 7551716 chr2R 7551781 7551806 6 90 5.0 6.0 5.5 0.9 113 chr2R 7551693 intron Corin + chr2R 7551750 intron Corin + chr2R 7551806 intron Corin + chr2R_6_7550001 chr2R_7550001 RAL-761 387 chr2R 7585914 7585933 chr2R 7586010 7586024 5 94 2.5 2.5 2.5 1.4 110 chr2R 7585914 intron blow - chr2R 7585969 intron blow - chr2R 7586024 intron blow - chr2R_5_7585001 chr2R_7585001 RAL-761 388 chr2R 7642868 7642892 chr2R 7642948 7642971 4 79 2.5 4.5 3.5 0.9 103 chr2R 7642868 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642971 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-761 389 chr2R 7743482 7743505 chr2R 7743562 7743586 12 80 2.0 2.0 2.0 4.0 104 chr2R 7743482 intron,intron CG30497 -,CG45093 - chr2R 7743534 intron,intron CG30497 -,CG45093 - chr2R 7743586 intron,intron CG30497 -,CG45093 - chr2R_12_7740001 chr2R_7740001 RAL-761 390 chr2R 7760286 7760303 chr2R 7760423 7760435 6 134 1.5 6.0 3.8 1.2 149 chr2R 7760286 intron,intron CG30497 -,CG45093 - chr2R 7760360 intron,intron CG30497 -,CG45093 - chr2R 7760435 intron,intron CG30497 -,CG45093 - chr2R_6_7760001 chr2R_7760001 RAL-761 391 chr2R 7815683 7815701 chr2R 7822139 7822141 Burdock 7 6461 3.0 3.5 3.2 1.7 6458 chr2R 7815683 intergenic CG1882 + chr2R 7818912 intergenic not near genes chr2R 7822141 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-761 392 chr2R 7851260 7851294 chr2R 7851346 7851380 18 85 2.5 3.0 2.8 4.7 120 chr2R 7851260 intron Dgk - chr2R 7851320 intron Dgk - chr2R 7851380 intron Dgk - chr2R_18_7850001 chr2R_7850001 RAL-761 393 chr2R 7869192 7869209 chr2R 7873978 7873993 Doc 4 4785 7.5 3.0 5.2 0.6 4801 chr2R 7869192 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873993 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-761 394 chr2R 7897148 7897156 chr2R 7897237 7897245 6 88 0.0 9.0 4.5 1.1 97 chr2R 7897148 intron CG30377 + chr2R 7897196 intron CG30377 + chr2R 7897245 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-761 395 chr2R 8015663 8015683 chr2R 8017679 8017706 4 2021 1.0 2.5 1.8 1.4 2043 chr2R 8015663 intergenic mir-4981 + chr2R 8016684 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-761 396 chr2R 8026811 8026837 chr2R 8026887 8026913 6 76 0.0 1.5 0.8 3.3 102 chr2R 8026811 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026913 intergenic CR45267 + chr2R_6_8025001 chr2R_8025001 RAL-761 397 chr2R 8076677 8076710 chr2R 8076757 8076790 14 79 4.5 1.5 3.0 3.5 113 chr2R 8076677 intron lig + chr2R 8076734 intron lig + chr2R 8076790 intron lig + chr2R_14_8075001 chr2R_8075001 RAL-761 398 chr2R 8089262 8089283 chr2R 8089347 8089368 6 86 4.0 0.5 2.2 1.9 106 chr2R 8089262 3` UTR sut2 + chr2R 8089315 intergenic sut2 +,sut3 + chr2R 8089368 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-761 399 chr2R 8298588 8298598 chr2R 8298676 8298690 5 91 1.5 1.5 1.5 2.0 102 chr2R 8298588 intergenic mir-280 + chr2R 8298639 intergenic mir-280 + chr2R 8298690 intergenic mir-280 + chr2R_5_8295001 chr2R_8295001 RAL-761 400 chr2R 8330863 8330887 chr2R 8331349 8331369 roo 9 485 2.0 2.5 2.2 2.8 506 chr2R 8330863 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331369 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-761 401 chr2R 8650288 8650303 chr2R 8650363 8650380 7 81 0.5 3.0 1.8 2.5 92 chr2R 8650288 5` UTR ptc + chr2R 8650334 5` UTR ptc + chr2R 8650380 5` UTR ptc + chr2R_7_8650001 chr2R_8650001 RAL-761 402 chr2R 8689951 8689978 chr2R 8690038 8690065 6 86 2.0 1.0 1.5 2.4 114 chr2R 8689951 intergenic not near genes chr2R 8690008 intergenic not near genes chr2R 8690065 intergenic not near genes chr2R_6_8690001 chr2R_8690001 RAL-761 403 chr2R 8722774 8722794 chr2R 8723003 8723015 pogo 9 234 4.5 4.0 4.2 1.7 241 chr2R 8722774 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723015 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-761 404 chr2R 9055797 9055823 chr2R 9055868 9055903 5 78 5.0 2.5 3.8 1.0 106 chr2R 9055797 intron CG13743 - chr2R 9055850 intron CG13743 - chr2R 9055903 intron CG13743 - chr2R_5_9055001 chr2R_9055001 RAL-761 405 chr2R 9065914 9065943 chr2R 9065995 9066025 7 82 1.0 2.5 1.8 2.5 111 chr2R 9065914 intron ana + chr2R 9065970 intron ana + chr2R 9066025 intron ana + chr2R_7_9065001 chr2R_9065001 RAL-761 406 chr2R 9151301 9151333 chr2R 9157771 9157802 Burdock 8 6470 4.5 1.5 3.0 2.0 6501 chr2R 9151301 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157802 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 RAL-761 407 chr2R 9183135 9183162 chr2R 9183217 9183244 4 82 4.0 5.0 4.5 0.7 109 chr2R 9183135 intron ltd - chr2R 9183190 intron ltd - chr2R 9183244 intron ltd - chr2R_4_9180001 chr2R_9180001 RAL-761 408 chr2R 9212694 9212725 chr2R 9213180 9213191 roo 9 480 1.5 3.5 2.5 2.6 497 chr2R 9212694 intergenic CR45309 + chr2R 9212942 intergenic CR45309 + chr2R 9213191 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-761 409 chr2R 9236525 9236539 chr2R 9237284 9237311 6 768 2.5 2.0 2.2 1.9 786 chr2R 9236525 intron hig - chr2R 9236918 intron hig - chr2R 9237311 intron hig - chr2R_6_9235001 chr2R_9235001 RAL-761 410 chr2R 9267977 9268008 chr2R 9268063 9268094 6 86 2.5 1.0 1.8 2.1 117 chr2R 9267977 intron Pkn - chr2R 9268036 intron Pkn - chr2R 9268094 intron Pkn - chr2R_6_9265001 chr2R_9265001 RAL-761 411 chr2R 9368126 9368155 chr2R 9368201 9368202 10 72 1.0 0.5 0.8 5.6 76 chr2R 9368126 intron CG13954 - chr2R 9368164 intron CG13954 - chr2R 9368202 intron CG13954 - chr2R_10_9365001 chr2R_9365001 RAL-761 412 chr2R 9388657 9388690 chr2R 9388743 9388776 9 85 1.5 2.5 2.0 3.0 119 chr2R 9388657 5` UTR CG13954 - chr2R 9388716 5` UTR CG13954 - chr2R 9388776 5` UTR CG13954 - chr2R_9_9385001 chr2R_9385001 RAL-761 413 chr2R 9412076 9412102 chr2R 9412187 9412212 4 111 4.5 1.5 3.0 1.0 136 chr2R 9412076 intron wun - chr2R 9412144 intron wun - chr2R 9412212 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-761 414 chr2R 9510665 9510695 chr2R 9510781 9510808 9 116 1.5 3.5 2.5 2.6 143 chr2R 9510665 intron brp + chr2R 9510736 intron brp + chr2R 9510808 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-761 415 chr2R 9541623 9541655 chr2R 9541700 9541732 5 76 0.0 0.0 0.0 5.0 109 chr2R 9541623 intergenic brp +,CG1888 - chr2R 9541678 intergenic brp +,CG1888 - chr2R 9541732 intergenic brp +,CG1888 - chr2R_5_9540001 chr2R_9540001 RAL-761 416 chr2R 9605831 9605859 chr2R 9605938 9605966 8 106 0.5 3.5 2.0 2.7 135 chr2R 9605831 3` UTR CR44285 - chr2R 9605898 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605966 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_8_9605001 chr2R_9605001 RAL-761 417 chr2R 9653260 9653287 chr2R 9653344 9653371 10 84 2.5 3.0 2.8 2.6 111 chr2R 9653260 intron Mmp2 - chr2R 9653316 intron Mmp2 - chr2R 9653371 intron Mmp2 - chr2R_10_9650001 chr2R_9650001 RAL-761 418 chr2R 9790079 9790105 chr2R 9790156 9790182 11 76 3.5 3.0 3.2 2.6 103 chr2R 9790079 intron,5` UTR CG1688 -,CR44208 + chr2R 9790130 intron,5` UTR CG1688 -,CR44208 + chr2R 9790182 intron,5` UTR CG1688 -,CR44208 + chr2R_11_9790001 chr2R_9790001 RAL-761 419 chr2R 10005558 10005572 chr2R 10005655 10005669 5 97 1.0 1.0 1.0 2.5 111 chr2R 10005558 intron Pka-R2 - chr2R 10005614 intron Pka-R2 - chr2R 10005669 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-761 420 chr2R 10005847 10005884 chr2R 10007012 10007025 1360 12 1159 5.0 3.0 4.0 2.4 1178 chr2R 10005847 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007025 intron Pka-R2 - chr2R_12_10005001 chr2R_10005001 RAL-761 421 chr2R 10047812 10047838 chr2R 10047895 10047920 5 83 2.0 5.5 3.8 1.0 108 chr2R 10047812 intron oys - chr2R 10047866 intron oys - chr2R 10047920 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-761 422 chr2R 10086929 10086933 chr2R 10087026 10087030 4 96 3.5 5.5 4.5 0.7 101 chr2R 10086929 intron,exon CG2269 +,sut4 - chr2R 10086980 intron,5` UTR CG2269 +,sut4 - chr2R 10087030 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-761 423 chr2R 10117022 10117052 chr2R 10117103 10117134 11 80 3.5 2.5 3.0 2.8 112 chr2R 10117022 3` UTR Pfk + chr2R 10117078 3` UTR Pfk + chr2R 10117134 3` UTR Pfk + chr2R_11_10115001 chr2R_10115001 RAL-761 424 chr2R 10132212 10132222 chr2R 10132292 10132296 4 79 3.0 4.5 3.8 0.8 84 chr2R 10132212 intron gem + chr2R 10132254 intron gem + chr2R 10132296 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-761 425 chr2R 10168356 10168364 chr2R 10168433 10168439 7 77 5.5 6.0 5.8 1.0 83 chr2R 10168356 intron KCNQ - chr2R 10168398 intron KCNQ - chr2R 10168439 intron KCNQ - chr2R_7_10165001 chr2R_10165001 RAL-761 426 chr2R 10172638 10172668 chr2R 10172750 10172778 6 112 0.5 1.0 0.8 3.3 140 chr2R 10172638 intron KCNQ - chr2R 10172708 intron KCNQ - chr2R 10172778 intron KCNQ - chr2R_6_10170001 chr2R_10170001 RAL-761 427 chr2R 10216192 10216221 chr2R 10216270 10216298 10 77 1.0 2.5 1.8 3.6 106 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216245 intron,intron CG12912 -,Hr46 - chr2R 10216298 intron,intron CG12912 -,Hr46 - chr2R_10_10215001 chr2R_10215001 RAL-761 428 chr2R 10225737 10225752 chr2R 10225819 10225834 5 82 2.5 2.0 2.2 1.6 97 chr2R 10225737 intron,intron CG12912 -,Hr46 - chr2R 10225786 intron,intron CG12912 -,Hr46 - chr2R 10225834 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-761 429 chr2R 10270569 10270601 chr2R 10270658 10270690 11 89 1.0 3.0 2.0 3.7 121 chr2R 10270569 intron CAP + chr2R 10270630 intron CAP + chr2R 10270690 intron CAP + chr2R_11_10270001 chr2R_10270001 RAL-761 430 chr2R 10385230 10385254 chr2R 10385340 10385347 10 107 1.5 0.5 1.0 5.0 117 chr2R 10385230 intron CG42732 - chr2R 10385288 intron CG42732 - chr2R 10385347 intron CG42732 - chr2R_10_10385001 chr2R_10385001 RAL-761 431 chr2R 10387978 10387986 chr2R 10388075 10388083 4 97 0.0 3.0 1.5 1.6 105 chr2R 10387978 intron CG42732 - chr2R 10388030 intron CG42732 - chr2R 10388083 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-761 432 chr2R 10400403 10400423 chr2R 10400482 10400503 11 77 4.0 5.5 4.8 1.9 100 chr2R 10400403 intron CG42732 - chr2R 10400453 intron CG42732 - chr2R 10400503 intron CG42732 - chr2R_11_10400001 chr2R_10400001 RAL-761 433 chr2R 10429021 10429049 chr2R 10429098 10429100 5 68 2.5 4.5 3.5 1.1 79 chr2R 10429021 intergenic not near genes chr2R 10429060 intergenic not near genes chr2R 10429100 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-761 434 chr2R 10454102 10454129 chr2R 10454179 10454206 6 76 3.0 7.5 5.2 1.0 104 chr2R 10454102 intron,intron Galphao +,Cyp49a1 - chr2R 10454154 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-761 435 chr2R 10469031 10469050 chr2R 10469147 10469166 6 116 5.0 2.0 3.5 1.3 135 chr2R 10469031 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469166 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-761 436 chr2R 10477185 10477194 chr2R 10477509 10477534 4 335 1.0 0.0 0.5 2.7 349 chr2R 10477185 intron whd - chr2R 10477360 intron whd - chr2R 10477534 intron whd - chr2R_4_10475001 chr2R_10475001 RAL-761 437 chr2R 10585574 10585590 chr2R 10594157 10594173 Tirant 5 8581 2.5 3.5 3.0 1.2 8599 chr2R 10585574 intron psq + chr2R 10589874 intron psq + chr2R 10594173 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-761 438 chr2R 10621246 10621261 chr2R 10621361 10621376 6 114 5.0 2.5 3.8 1.2 130 chr2R 10621246 intron CG11883 + chr2R 10621311 intron CG11883 + chr2R 10621376 intron CG11883 + chr2R_6_10620001 chr2R_10620001 RAL-761 439 chr2R 10644058 10644088 chr2R 10644136 10644166 8 78 2.5 0.5 1.5 3.2 108 chr2R 10644058 intron Git - chr2R 10644112 intron Git - chr2R 10644166 intron Git - chr2R_8_10640001 chr2R_10640001 RAL-761 440 chr2R 10658053 10658084 chr2R 10658145 10658176 11 92 1.5 3.0 2.2 3.4 123 chr2R 10658053 intergenic not near genes chr2R 10658114 intergenic not near genes chr2R 10658176 intergenic not near genes chr2R_11_10655001 chr2R_10655001 RAL-761 441 chr2R 10671251 10671275 chr2R 10671329 10671353 10 76 5.5 0.0 2.8 2.6 102 chr2R 10671251 intergenic not near genes chr2R 10671302 intergenic not near genes chr2R 10671353 intergenic not near genes chr2R_10_10670001 chr2R_10670001 RAL-761 442 chr2R 10748728 10748761 chr2R 10748808 10748808 5 72 2.5 2.0 2.2 1.6 80 chr2R 10748728 intron CG33144 - chr2R 10748768 intron CG33144 - chr2R 10748808 intron CG33144 - chr2R_5_10745001 chr2R_10745001 RAL-761 443 chr2R 10758795 10758822 chr2R 10758894 10758921 8 98 4.0 3.0 3.5 1.8 126 chr2R 10758795 intron CG33144 - chr2R 10758858 intron CG33144 - chr2R 10758921 intron CG33144 - chr2R_8_10755001 chr2R_10755001 RAL-761 444 chr2R 10761556 10761589 chr2R 10761710 10761737 13 153 1.5 2.5 2.0 4.3 181 chr2R 10761556 intron,5` UTR CG33144 -,CR43605 + chr2R 10761646 intron,5` UTR CG33144 -,CR43605 + chr2R 10761737 intron CG33144 - chr2R_13_10760001 chr2R_10760001 RAL-761 445 chr2R 10827334 10827352 chr2R 10827422 10827424 5 83 7.0 4.0 5.5 0.8 90 chr2R 10827334 exon CG12325 + chr2R 10827379 3` UTR CG12325 + chr2R 10827424 3` UTR CG12325 + chr2R_5_10825001 chr2R_10825001 RAL-761 446 chr2R 10948042 10948055 chr2R 10955576 10955584 17.6 4 7538 1.0 2.0 1.5 1.6 7542 chr2R 10948042 intergenic not near genes chr2R 10951813 intergenic not near genes chr2R 10955584 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-761 447 chr2R 10979656 10979678 chr2R 10980126 10980148 297 5 469 2.0 3.0 2.5 1.4 492 chr2R 10979656 intergenic not near genes chr2R 10979902 intergenic not near genes chr2R 10980148 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-761 448 chr2R 11009815 11009846 chr2R 11018989 11019020 roo 11 9170 1.0 2.0 1.5 4.4 9205 chr2R 11009815 intron luna - chr2R 11014418 intron luna - chr2R 11019020 intron luna - chr2R_11_11010001 chr2R_11010001 RAL-761 449 chr2R 11032652 11032664 chr2R 11032746 11032758 4 92 1.0 4.5 2.8 1.1 106 chr2R 11032652 intron luna - chr2R 11032705 intron luna - chr2R 11032758 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-761 450 chr2R 11194825 11194830 chr2R 11194941 11194946 4 116 3.5 0.5 2.0 1.3 121 chr2R 11194825 intron shn + chr2R 11194886 intron shn + chr2R 11194946 intron shn + chr2R_4_11190001 chr2R_11190001 RAL-761 451 chr2R 11207820 11207829 chr2R 11208010 11208021 BS 5 192 7.5 4.0 5.8 0.7 201 chr2R 11207820 intron shn + chr2R 11207920 intron shn + chr2R 11208021 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-761 452 chr2R 11207830 11207841 chr2R 11208006 11208033 BS 8 186 6.0 3.5 4.8 1.4 203 chr2R 11207830 intron shn + chr2R 11207932 intron shn + chr2R 11208033 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-761 453 chr2R 11415521 11415551 chr2R 11418670 11418700 opus 7 3146 2.5 5.0 3.8 1.5 3179 chr2R 11415521 intron Drip - chr2R 11417110 intron Drip - chr2R 11418700 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-761 454 chr2R 11485117 11485146 chr2R 11485195 11485198 6 74 1.0 4.0 2.5 1.7 81 chr2R 11485117 intron inv + chr2R 11485158 intron inv + chr2R 11485198 intron inv + chr2R_6_11485001 chr2R_11485001 RAL-761 455 chr2R 11535151 11535161 chr2R 11535218 11535237 5 74 2.5 4.0 3.2 1.2 86 chr2R 11535151 intergenic not near genes chr2R 11535194 intergenic not near genes chr2R 11535237 intergenic not near genes chr2R_5_11535001 chr2R_11535001 RAL-761 456 chr2R 8518783 8518789 chr2R 12066178 12066193 4 3547397 9.5 11.5 10.5 0.3 3547410 chr2R 8518783 intron mtt - chr2R 10292488 intron CAP + chr2R 12066193 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-761 457 chr2R 12124834 12124858 chr2R 12124913 12124942 9 83 2.5 1.0 1.8 3.2 108 chr2R 12124834 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124942 intergenic not near genes chr2R_9_12120001 chr2R_12120001 RAL-761 458 chr2R 12187480 12187484 chr2R 12190096 12190100 5 2616 63.0 54.0 58.5 0.1 2620 chr2R 12187480 exon Cyp6g1 + chr2R 12188790 exon Cyp6g2 - chr2R 12190100 exon Cyp6g2 - chr2R_5_12185001 chr2R_12185001 RAL-761 459 chr2R 12187471 12187506 chr2R 12190104 12190124 12 2625 78.5 50.0 64.2 0.2 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_12_12185001 chr2R_12185001 RAL-761 460 chr2R 12217588 12217602 chr2R 12217657 12217683 4 78 3.5 4.0 3.8 0.8 95 chr2R 12217588 intergenic not near genes chr2R 12217636 intergenic not near genes chr2R 12217683 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-761 461 chr2R 12363386 12363418 chr2R 12363818 12363846 12 431 2.0 5.0 3.5 2.7 460 chr2R 12363386 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-761 462 chr2R 12417465 12417485 chr2R 12417542 12417564 5 78 2.5 2.0 2.2 1.6 99 chr2R 12417465 exon CG13157 + chr2R 12417514 exon CG13157 + chr2R 12417564 exon CG13157 + chr2R_5_12415001 chr2R_12415001 RAL-761 463 chr2R 12492097 12492120 chr2R 12492183 12492214 7 90 5.5 0.0 2.8 1.8 117 chr2R 12492097 intron fdl - chr2R 12492156 intron fdl - chr2R 12492214 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-761 464 chr2R 12501702 12501722 chr2R 12503851 12503884 Rt1c 5 2157 0.5 4.0 2.2 1.6 2182 chr2R 12501702 intron fdl - chr2R 12502793 intron fdl - chr2R 12503884 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-761 465 chr2R 12504157 12504176 chr2R 12504227 12504245 5 69 5.0 6.5 5.8 0.7 88 chr2R 12504157 intron fdl - chr2R 12504201 intron fdl - chr2R 12504245 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-761 466 chr2R 12546756 12546780 chr2R 12546833 12546851 6 74 1.0 2.5 1.8 2.1 95 chr2R 12546756 intron fra + chr2R 12546804 intron fra + chr2R 12546851 intron fra + chr2R_6_12545001 chr2R_12545001 RAL-761 467 chr2R 12627493 12627501 chr2R 12627586 12627593 5 93 0.0 6.0 3.0 1.2 100 chr2R 12627493 intron CG17760 + chr2R 12627543 intron CG17760 + chr2R 12627593 intron CG17760 + chr2R_5_12625001 chr2R_12625001 RAL-761 468 chr2R 12743782 12743810 chr2R 12743906 12743934 5 124 1.0 1.5 1.2 2.3 152 chr2R 12743782 intron CG42663 + chr2R 12743858 intron CG42663 + chr2R 12743934 intron CG42663 + chr2R_5_12740001 chr2R_12740001 RAL-761 469 chr2R 12789294 12789321 chr2R 12797657 12797676 roo 6 8358 1.5 4.5 3.0 1.5 8382 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793485 intron,intron sca +,CR45137 - chr2R 12797676 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-761 470 chr2R 12819455 12819471 chr2R 12824524 12824540 jockey 4 5069 1.0 3.0 2.0 1.3 5085 chr2R 12819455 intergenic not near genes chr2R 12821998 intergenic not near genes chr2R 12824540 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-761 471 chr2R 12951671 12951689 chr2R 12951751 12951766 6 78 1.0 4.0 2.5 1.7 95 chr2R 12951671 intron,intron CG44251 -,CG44250 - chr2R 12951718 intron,intron CG44251 -,CG44250 - chr2R 12951766 intron,intron CG44251 -,CG44250 - chr2R_6_12950001 chr2R_12950001 RAL-761 472 chr2R 13136834 13136870 chr2R 13141632 13141666 Doc 14 4798 9.5 4.5 7.0 1.8 4832 chr2R 13136834 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-761 473 chr2R 13142987 13143009 chr2R 13143648 13143676 5 665 40.0 26.0 33.0 0.1 689 chr2R 13142987 3` UTR Ack-like - chr2R 13143332 intron Ack-like - chr2R 13143676 exon Ack-like - chr2R_5_13140001 chr2R_13140001 RAL-761 474 chr2R 13167432 13167455 chr2R 13167525 13167549 7 94 11.5 6.0 8.8 0.7 117 chr2R 13167432 intron GLaz - chr2R 13167490 intron GLaz - chr2R 13167549 intron GLaz - chr2R_7_13165001 chr2R_13165001 RAL-761 475 chr2R 13403921 13403936 chr2R 13404006 13404021 4 84 2.5 2.5 2.5 1.1 100 chr2R 13403921 intergenic not near genes chr2R 13403971 intergenic not near genes chr2R 13404021 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-761 476 chr2R 13431492 13431517 chr2R 13431571 13431596 6 78 3.0 3.5 3.2 1.4 104 chr2R 13431492 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431596 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-761 477 chr2R 13438862 13438886 chr2R 13440180 13440204 14 1318 8.0 28.0 18.0 0.7 1342 chr2R 13438862 5` UTR CG42321 - chr2R 13439533 3` UTR cnn - chr2R 13440204 exon cnn - chr2R_14_13435001 chr2R_13435001 RAL-761 478 chr2R 13547082 13547109 chr2R 13547277 13547304 5 195 2.0 1.0 1.5 2.0 222 chr2R 13547082 intron CG6145 - chr2R 13547193 intron CG6145 - chr2R 13547304 intron CG6145 - chr2R_5_13545001 chr2R_13545001 RAL-761 479 chr2R 13566258 13566291 chr2R 13566338 13566371 15 79 2.0 0.0 1.0 7.5 113 chr2R 13566258 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_15_13565001 chr2R_13565001 RAL-761 480 chr2R 13577458 13577467 chr2R 13577533 13577544 6 75 2.0 6.0 4.0 1.2 86 chr2R 13577458 5` UTR CR44365 + chr2R 13577501 5` UTR CR44365 + chr2R 13577544 5` UTR CR44365 + chr2R_6_13575001 chr2R_13575001 RAL-761 481 chr2R 13749503 13749522 chr2R 13749592 13749607 5 88 3.5 3.0 3.2 1.2 104 chr2R 13749503 intergenic fas + chr2R 13749555 intergenic fas + chr2R 13749607 intergenic fas + chr2R_5_13745001 chr2R_13745001 RAL-761 482 chr2R 13768981 13769007 chr2R 13769079 13769106 7 99 3.0 6.0 4.5 1.3 125 chr2R 13768981 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769106 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-761 483 chr2R 13790330 13790343 chr2R 13790404 13790419 4 75 0.5 0.0 0.2 3.3 89 chr2R 13790330 intergenic not near genes chr2R 13790374 intergenic not near genes chr2R 13790419 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-761 484 chr2R 13868897 13868914 chr2R 13868976 13868987 6 77 2.5 2.0 2.2 1.9 90 chr2R 13868897 intron shot - chr2R 13868942 intron shot - chr2R 13868987 intron shot - chr2R_6_13865001 chr2R_13865001 RAL-761 485 chr2R 14018166 14018179 chr2R 14018247 14018263 4 83 1.5 2.5 2.0 1.3 97 chr2R 14018166 intron mam + chr2R 14018214 intron mam + chr2R 14018263 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-761 486 chr2R 14030674 14030689 chr2R 14030777 14030790 5 99 5.5 2.0 3.8 1.0 116 chr2R 14030674 intron mam + chr2R 14030732 intron mam + chr2R 14030790 intron mam + chr2R_5_14030001 chr2R_14030001 RAL-761 487 chr2R 14087849 14087871 chr2R 14087934 14087956 4 85 3.5 2.0 2.8 1.1 107 chr2R 14087849 intron Prosap - chr2R 14087902 intron Prosap - chr2R 14087956 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-761 488 chr2R 14378979 14379014 chr2R 14379443 14379478 15 463 3.5 2.0 2.8 3.9 499 chr2R 14378979 intron Dh44-R1 + chr2R 14379228 intron Dh44-R1 + chr2R 14379478 intron Dh44-R1 + chr2R_15_14375001 chr2R_14375001 RAL-761 489 chr2R 14386437 14386466 chr2R 14386524 14386553 9 85 1.5 4.0 2.8 2.4 116 chr2R 14386437 intergenic not near genes chr2R 14386495 intergenic not near genes chr2R 14386553 intergenic not near genes chr2R_9_14385001 chr2R_14385001 RAL-761 490 chr2R 14467300 14467319 chr2R 14476445 14476468 roo 7 9150 4.0 6.0 5.0 1.2 9168 chr2R 14467300 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476468 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-761 491 chr2R 14514491 14514496 chr2R 14514581 14514596 4 93 0.0 3.0 1.5 1.6 105 chr2R 14514491 intron,intron Cpr51A -,CG30197 + chr2R 14514544 intron,intron Cpr51A -,CG30197 + chr2R 14514596 intron,intron Cpr51A -,CG30197 + chr2R_4_14510001 chr2R_14510001 RAL-761 492 chr2R 14718114 14718147 chr2R 14718200 14718215 15 77 1.5 2.0 1.8 5.4 101 chr2R 14718114 intergenic not near genes chr2R 14718164 intergenic not near genes chr2R 14718215 intergenic not near genes chr2R_15_14715001 chr2R_14715001 RAL-761 493 chr2R 14799868 14799895 chr2R 14799944 14799971 8 76 1.0 3.5 2.2 2.5 103 chr2R 14799868 intron kn - chr2R 14799920 intron kn - chr2R 14799971 intron kn - chr2R_8_14795001 chr2R_14795001 RAL-761 494 chr2R 14855034 14855061 chr2R 14855122 14855151 7 91 2.5 1.0 1.8 2.5 117 chr2R 14855034 5` UTR Ciao1 - chr2R 14855092 intergenic Ciao1 -,HPS1 + chr2R 14855151 intergenic Ciao1 -,HPS1 + chr2R_7_14855001 chr2R_14855001 RAL-761 495 chr2R 14889208 14889226 chr2R 14897816 14897834 Max-element 4 8608 2.0 0.0 1.0 2.0 8626 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893521 intergenic not near genes chr2R 14897834 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-761 496 chr2R 14911701 14911726 chr2R 14911824 14911849 6 123 2.5 2.5 2.5 1.7 148 chr2R 14911701 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-761 497 chr2R 14968445 14968470 chr2R 14968524 14968552 5 81 5.0 2.5 3.8 1.0 107 chr2R 14968445 intron ckn + chr2R 14968498 intron ckn + chr2R 14968552 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-761 498 chr2R 14979762 14979789 chr2R 14979838 14979865 5 76 3.0 2.0 2.5 1.4 103 chr2R 14979762 3` UTR ckn + chr2R 14979814 3` UTR ckn + chr2R 14979865 3` UTR ckn + chr2R_5_14975001 chr2R_14975001 RAL-761 499 chr2R 15015454 15015466 chr2R 15022878 15022889 mdg1 4 7423 2.5 0.0 1.2 1.8 7435 chr2R 15015454 intron hbs + chr2R 15019172 intron hbs + chr2R 15022889 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-761 500 chr2R 15054737 15054756 chr2R 15054813 15054833 4 76 3.0 2.0 2.5 1.1 96 chr2R 15054737 intergenic not near genes chr2R 15054785 intergenic not near genes chr2R 15054833 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-761 501 chr2R 15084985 15085007 chr2R 15092033 15092056 297 5 7049 2.5 4.0 3.2 1.2 7071 chr2R 15084985 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-761 502 chr2R 15092424 15092434 chr2R 15092514 15092524 4 89 1.5 5.0 3.2 1.0 100 chr2R 15092424 5` UTR CR44457 + chr2R 15092474 intergenic CR44457 + chr2R 15092524 intergenic CR44457 + chr2R_4_15090001 chr2R_15090001 RAL-761 503 chr2R 15119327 15119348 chr2R 15127801 15127824 Tirant 5 8477 3.5 3.0 3.2 1.2 8497 chr2R 15119327 intron chn + chr2R 15123576 intron chn + chr2R 15127824 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-761 504 chr2R 15137967 15138004 chr2R 15138047 15138086 8 80 2.0 0.5 1.2 3.6 119 chr2R 15137967 intron chn + chr2R 15138026 intron chn + chr2R 15138086 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-761 505 chr2R 15156319 15156321 chr2R 15156402 15156404 4 83 7.5 3.5 5.5 0.6 85 chr2R 15156319 intron igl + chr2R 15156362 intron igl + chr2R 15156404 intron igl + chr2R_4_15155001 chr2R_15155001 RAL-761 506 chr2R 15221951 15221960 chr2R 15222027 15222049 8 88 3.5 3.5 3.5 1.8 98 chr2R 15221951 exon CG8079 + chr2R 15222000 intron CG8079 + chr2R 15222049 intron CG8079 + chr2R_8_15220001 chr2R_15220001 RAL-761 507 chr2R 15296159 15296323 chr2R 15296242 15296428 12 96 2.5 1.0 1.8 4.3 269 chr2R 15296159 intron Trpm - chr2R 15296294 intron Trpm - chr2R 15296428 intron Trpm - chr2R_12_15295001 chr2R_15295001 RAL-761 508 chr2R 15297660 15297685 chr2R 15302097 15302122 8 4438 32.0 23.0 27.5 0.3 4462 chr2R 15297660 intron,exon Trpm -,CG8102 - chr2R 15299891 intron Trpm - chr2R 15302122 intron Trpm - chr2R_8_15295001 chr2R_15295001 RAL-761 509 chr2R 15375354 15375360 chr2R 15376165 15376177 4 815 1.0 2.5 1.8 1.4 823 chr2R 15375354 intergenic not near genes chr2R 15375766 intergenic not near genes chr2R 15376177 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-761 510 chr2R 15587546 15587567 chr2R 15587675 15587697 5 128 7.0 2.5 4.8 0.9 151 chr2R 15587546 intergenic not near genes chr2R 15587622 intergenic not near genes chr2R 15587697 intergenic not near genes chr2R_5_15585001 chr2R_15585001 RAL-761 511 chr2R 15653923 15653941 chr2R 15654005 15654023 4 82 4.0 3.0 3.5 0.9 100 chr2R 15653923 intron CG42524 + chr2R 15653973 intron CG42524 + chr2R 15654023 intron CG42524 + chr2R_4_15650001 chr2R_15650001 RAL-761 512 chr2R 15655989 15656009 chr2R 15656069 15656089 6 78 3.0 2.0 2.5 1.7 100 chr2R 15655989 intron CG42524 + chr2R 15656039 intron CG42524 + chr2R 15656089 intron CG42524 + chr2R_6_15655001 chr2R_15655001 RAL-761 513 chr2R 15720770 15720790 chr2R 15720866 15720886 4 96 3.5 2.5 3.0 1.0 116 chr2R 15720770 intergenic not near genes chr2R 15720828 intergenic not near genes chr2R 15720886 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-761 514 chr2R 16380120 16380152 chr2R 16380218 16380250 8 98 2.5 0.0 1.2 3.6 130 chr2R 16380120 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380185 3` UTR CR45317 - chr2R 16380250 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_8_16380001 chr2R_16380001 RAL-761 515 chr2R 16539640 16539664 chr2R 16544849 16544873 copia 4 5209 0.5 0.0 0.2 3.3 5233 chr2R 16539640 intergenic not near genes chr2R 16542256 intergenic not near genes chr2R 16544873 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-761 516 chr2R 16571878 16571904 chr2R 16571973 16571999 5 95 2.0 2.0 2.0 1.7 121 chr2R 16571878 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571999 intergenic CG4927 + chr2R_5_16570001 chr2R_16570001 RAL-761 517 chr2R 16617058 16617082 chr2R 16617137 16617161 8 78 2.0 4.0 3.0 2.0 103 chr2R 16617058 intron CG5065 + chr2R 16617110 intron CG5065 + chr2R 16617161 intron CG5065 + chr2R_8_16615001 chr2R_16615001 RAL-761 518 chr2R 16689163 16689175 chr2R 16689481 16689489 4 315 6.0 2.0 4.0 0.8 326 chr2R 16689163 intron CG30463 - chr2R 16689326 intron CG30463 - chr2R 16689489 intron CG30463 - chr2R_4_16685001 chr2R_16685001 RAL-761 519 chr2R 16775642 16775659 chr2R 16775906 16775923 5 263 1.0 3.0 2.0 1.7 281 chr2R 16775642 3` UTR Arp53D + chr2R 16775782 intergenic Arp53D + chr2R 16775923 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-761 520 chr2R 16839420 16839453 chr2R 16839503 16839536 7 82 2.5 0.5 1.5 2.8 116 chr2R 16839420 5` UTR CR43650 + chr2R 16839478 5` UTR CR43650 + chr2R 16839536 intergenic CR43650 + chr2R_7_16835001 chr2R_16835001 RAL-761 521 chr2R 16920688 16920701 chr2R 16920755 16920781 6 76 1.0 2.0 1.5 2.4 93 chr2R 16920688 intergenic not near genes chr2R 16920734 intergenic not near genes chr2R 16920781 intergenic not near genes chr2R_6_16920001 chr2R_16920001 RAL-761 522 chr2R 17176359 17176386 chr2R 17182544 17182576 diver 6 6189 0.5 2.0 1.2 2.7 6217 chr2R 17176359 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182576 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-761 523 chr2R 17236511 17236538 chr2R 17241715 17241742 copia 12 5203 2.0 5.0 3.5 2.7 5231 chr2R 17236511 intron mbl + chr2R 17239126 intron mbl + chr2R 17241742 intron mbl + chr2R_12_17235001 chr2R_17235001 RAL-761 524 chr2R 17277239 17277241 chr2R 17277640 17277640 jockey 4 404 2.0 2.0 2.0 1.3 401 chr2R 17277239 intron mbl + chr2R 17277440 intron mbl + chr2R 17277640 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-761 525 chr2R 17627750 17627780 chr2R 17628075 17628107 12 326 3.0 2.5 2.8 3.2 357 chr2R 17627750 intron CG10936 - chr2R 17627928 intron CG10936 - chr2R 17628107 intron CG10936 - chr2R_12_17625001 chr2R_17625001 RAL-761 526 chr2R 17655205 17655232 chr2R 17655281 17655285 9 73 2.0 4.0 3.0 2.2 80 chr2R 17655205 intron CCHa1-R - chr2R 17655245 intron CCHa1-R - chr2R 17655285 intron CCHa1-R - chr2R_9_17655001 chr2R_17655001 RAL-761 527 chr2R 17784024 17784049 chr2R 17784265 17784290 pogo 9 238 7.5 3.0 5.2 1.5 266 chr2R 17784024 intergenic mir-31a - chr2R 17784157 intergenic mir-31a - chr2R 17784290 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-761 528 chr2R 17849815 17849826 chr2R 17849970 17849983 4 156 1.0 1.5 1.2 1.8 168 chr2R 17849815 intron olf186-F + chr2R 17849899 intron olf186-F + chr2R 17849983 intron olf186-F + chr2R_4_17845001 chr2R_17845001 RAL-761 529 chr2R 17982927 17982952 chr2R 17983012 17983036 11 84 1.0 2.5 1.8 3.9 109 chr2R 17982927 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983036 intron dpr13 - chr2R_11_17980001 chr2R_17980001 RAL-761 530 chr2R 18044016 18044050 chr2R 18044368 18044395 9 351 2.0 3.0 2.5 2.6 379 chr2R 18044016 intergenic CG5770 -,CG5773 - chr2R 18044206 3` UTR CG5770 - chr2R 18044395 exon CG5770 - chr2R_9_18040001 chr2R_18040001 RAL-761 531 chr2R 18052466 18052496 chr2R 18052551 18052580 6 84 2.5 2.5 2.5 1.7 114 chr2R 18052466 intergenic CG10911 -,Muc55B - chr2R 18052523 intergenic CG10911 -,Muc55B - chr2R 18052580 3` UTR CG10911 - chr2R_6_18050001 chr2R_18050001 RAL-761 532 chr2R 18142916 18142919 chr2R 18143151 18143158 4 237 10.5 10.0 10.2 0.4 242 chr2R 18142916 intron,5` UTR pAbp +,snoRNA:Psi18S-1347a + chr2R 18143037 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R 18143158 intron pAbp + chr2R_4_18140001 chr2R_18140001 RAL-761 533 chr2R 18263320 18263352 chr2R 18263405 18263438 19 85 1.0 1.0 1.0 9.5 118 chr2R 18263320 intergenic not near genes chr2R 18263379 intergenic not near genes chr2R 18263438 intergenic not near genes chr2R_19_18260001 chr2R_18260001 RAL-761 534 chr2R 18289449 18289463 chr2R 18289551 18289555 4 100 0.5 0.5 0.5 2.7 106 chr2R 18289449 intron,intron sbb -,CG14502 + chr2R 18289502 intron,intron sbb -,CG14502 + chr2R 18289555 exon,intron sbb -,CG14502 + chr2R_4_18285001 chr2R_18285001 RAL-761 535 chr2R 18308283 18308318 chr2R 18308389 18308424 15 106 2.0 5.0 3.5 3.3 141 chr2R 18308283 intron sbb - chr2R 18308354 intron sbb - chr2R 18308424 intron sbb - chr2R_15_18305001 chr2R_18305001 RAL-761 536 chr2R 18314403 18314433 chr2R 18314480 18314511 7 77 2.0 3.5 2.8 1.8 108 chr2R 18314403 intron sbb - chr2R 18314457 intron sbb - chr2R 18314511 intron sbb - chr2R_7_18310001 chr2R_18310001 RAL-761 537 chr2R 18358397 18358418 chr2R 18372609 18372630 roo 9 14212 4.5 4.0 4.2 1.7 14233 chr2R 18358397 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372630 intergenic not near genes chr2R_9_18365001 chr2R_18365001 RAL-761 538 chr2R 18404388 18404407 chr2R 18404476 18404494 4 87 0.5 5.0 2.8 1.1 106 chr2R 18404388 intergenic GstE5 +,GstE4 + chr2R 18404441 intergenic GstE5 +,GstE4 + chr2R 18404494 intergenic GstE5 +,GstE4 + chr2R_4_18400001 chr2R_18400001 RAL-761 539 chr2R 18575812 18575830 chr2R 18581984 18582017 3S18 7 6180 1.5 4.0 2.8 1.8 6205 chr2R 18575812 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-761 540 chr2R 18590868 18590899 chr2R 18600019 18600051 roo 4 9152 3.0 4.5 3.8 0.8 9183 chr2R 18590868 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-761 541 chr2R 19007122 19007134 chr2R 19007202 19007214 5 80 3.5 1.5 2.5 1.4 92 chr2R 19007122 intron tn + chr2R 19007168 intron tn + chr2R 19007214 intron tn + chr2R_5_19005001 chr2R_19005001 RAL-761 542 chr2R 19012936 19012969 chr2R 19013030 19013063 8 93 3.0 0.5 1.8 2.9 127 chr2R 19012936 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013063 intergenic not near genes chr2R_8_19010001 chr2R_19010001 RAL-761 543 chr2R 19043983 19044009 chr2R 19044063 19044076 6 78 0.5 2.0 1.2 2.7 93 chr2R 19043983 intergenic not near genes chr2R 19044030 intergenic not near genes chr2R 19044076 intergenic not near genes chr2R_6_19040001 chr2R_19040001 RAL-761 544 chr2R 19181532 19181567 chr2R 19182034 19182069 20 508 24.5 30.0 27.2 0.7 537 chr2R 19181532 intron hppy + chr2R 19181800 intron hppy + chr2R 19182069 intron hppy + chr2R_20_19180001 chr2R_19180001 RAL-761 545 chr2R 19183354 19183371 chr2R 19183424 19183447 8 73 5.0 1.5 3.2 1.9 93 chr2R 19183354 intron hppy + chr2R 19183400 intron hppy + chr2R 19183447 intron hppy + chr2R_8_19180001 chr2R_19180001 RAL-761 546 chr2R 19300961 19300995 chr2R 19301044 19301078 12 82 0.5 6.5 3.5 2.7 117 chr2R 19300961 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301078 intron Tab2 + chr2R_12_19300001 chr2R_19300001 RAL-761 547 chr2R 19532715 19532745 chr2R 19532797 19532827 12 82 6.5 2.5 4.5 2.2 112 chr2R 19532715 intron sm - chr2R 19532771 intron sm - chr2R 19532827 intron sm - chr2R_12_19530001 chr2R_19530001 RAL-761 548 chr2R 19624214 19624223 chr2R 19624558 19624568 4 344 5.5 3.5 4.5 0.7 354 chr2R 19624214 intron sm - chr2R 19624391 intron sm - chr2R 19624568 intron sm - chr2R_4_19620001 chr2R_19620001 RAL-761 549 chr2R 19794872 19794900 chr2R 19794970 19794983 9 99 2.5 3.0 2.8 2.4 111 chr2R 19794872 intergenic not near genes chr2R 19794928 intergenic not near genes chr2R 19794983 intergenic not near genes chr2R_9_19790001 chr2R_19790001 RAL-761 550 chr2R 19914845 19914869 chr2R 19922257 19922281 mdg1 11 7412 3.0 1.0 2.0 3.7 7436 chr2R 19914845 intergenic not near genes chr2R 19918563 intergenic not near genes chr2R 19922281 intergenic not near genes chr2R_11_19915001 chr2R_19915001 RAL-761 551 chr2R 19957433 19957460 chr2R 19962633 19962662 copia 8 5196 1.0 2.5 1.8 2.9 5229 chr2R 19957433 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_8_19960001 chr2R_19960001 RAL-761 552 chr2R 20004013 20004040 chr2R 20004283 20004311 8 271 3.0 4.5 3.8 1.7 298 chr2R 20004013 exon CG16898 - chr2R 20004162 exon CG16898 - chr2R 20004311 exon CG16898 - chr2R_8_20000001 chr2R_20000001 RAL-761 553 chr2R 20069233 20069236 chr2R 20071872 20071875 opus 4 2639 0.5 1.5 1.0 2.0 2642 chr2R 20069233 intergenic not near genes chr2R 20070554 intergenic not near genes chr2R 20071875 intergenic not near genes chr2R_4_20070001 chr2R_20070001 RAL-761 554 chr2R 20118877 20118900 chr2R 20118965 20118987 4 88 3.5 1.5 2.5 1.1 110 chr2R 20118877 intergenic not near genes chr2R 20118932 intergenic not near genes chr2R 20118987 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-761 555 chr2R 20199225 20199248 chr2R 20199301 20199320 5 76 2.0 1.5 1.8 1.8 95 chr2R 20199225 intergenic not near genes chr2R 20199272 intergenic not near genes chr2R 20199320 intergenic not near genes chr2R_5_20195001 chr2R_20195001 RAL-761 556 chr2R 20227677 20227708 chr2R 20227774 20227783 8 93 2.0 1.5 1.8 2.9 106 chr2R 20227677 intergenic not near genes chr2R 20227730 intergenic not near genes chr2R 20227783 intergenic not near genes chr2R_8_20225001 chr2R_20225001 RAL-761 557 chr2R 20320745 20320770 chr2R 20320827 20320851 10 83 3.0 4.5 3.8 2.1 106 chr2R 20320745 intron CG8920 + chr2R 20320798 intron CG8920 + chr2R 20320851 intron CG8920 + chr2R_10_20320001 chr2R_20320001 RAL-761 558 chr2R 20395359 20395393 chr2R 20395615 20395647 5 255 2.0 3.0 2.5 1.4 288 chr2R 20395359 intergenic not near genes chr2R 20395503 intergenic not near genes chr2R 20395647 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-761 559 chr2R 20523048 20523071 chr2R 20523149 20523181 10 107 2.0 4.0 3.0 2.5 133 chr2R 20523048 intergenic not near genes chr2R 20523114 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_10_20520001 chr2R_20520001 RAL-761 560 chr2R 20541984 20542017 chr2R 20542062 20542095 4 78 1.5 2.5 2.0 1.3 111 chr2R 20541984 intergenic not near genes chr2R 20542040 intergenic not near genes chr2R 20542095 intergenic not near genes chr2R_4_20540001 chr2R_20540001 RAL-761 561 chr2R 20678214 20678235 chr2R 20678344 20678365 4 130 2.0 5.0 3.5 0.9 151 chr2R 20678214 intergenic not near genes chr2R 20678290 intergenic not near genes chr2R 20678365 intergenic not near genes chr2R_4_20675001 chr2R_20675001 RAL-761 562 chr2R 20690759 20690787 chr2R 20690835 20690836 6 66 3.5 6.5 5.0 1.0 77 chr2R 20690759 intergenic not near genes chr2R 20690798 intergenic not near genes chr2R 20690836 intergenic not near genes chr2R_6_20690001 chr2R_20690001 RAL-761 563 chr2R 20698118 20698124 chr2R 20698228 20698239 4 114 1.0 0.5 0.8 2.2 121 chr2R 20698118 intergenic dpr + chr2R 20698178 intergenic dpr + chr2R 20698239 intergenic dpr + chr2R_4_20695001 chr2R_20695001 RAL-761 564 chr2R 20739442 20739475 chr2R 20744210 20744243 F-element 4 4768 1.5 1.5 1.5 1.6 4801 chr2R 20739442 intron dpr + chr2R 20741842 intron dpr + chr2R 20744243 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-761 565 chr2R 20809212 20809247 chr2R 20809477 20809512 8 264 3.5 4.0 3.8 1.7 300 chr2R 20809212 intergenic not near genes chr2R 20809362 intergenic not near genes chr2R 20809512 intergenic not near genes chr2R_8_20805001 chr2R_20805001 RAL-761 566 chr2R 21060633 21060654 chr2R 21060709 21060729 4 76 2.0 2.5 2.2 1.2 96 chr2R 21060633 intergenic CG15653 -,mRpL54 + chr2R 21060681 intergenic mRpL54 +,CG15653 - chr2R 21060729 intergenic mRpL54 +,CG15653 - chr2R_4_21060001 chr2R_21060001 RAL-761 567 chr2R 21110791 21110822 chr2R 21110883 21110915 10 92 5.0 6.5 5.8 1.5 124 chr2R 21110791 intron ktub + chr2R 21110853 intron ktub + chr2R 21110915 intron ktub + chr2R_10_21110001 chr2R_21110001 RAL-761 568 chr2R 21116720 21116740 chr2R 21116799 21116821 6 80 2.5 4.0 3.2 1.4 101 chr2R 21116720 intron ktub + chr2R 21116770 intron ktub + chr2R 21116821 intron ktub + chr2R_6_21115001 chr2R_21115001 RAL-761 569 chr2R 21344444 21344451 chr2R 21344528 21344537 6 84 5.5 1.5 3.5 1.3 93 chr2R 21344444 exon CG15666 + chr2R 21344490 intron CG15666 + chr2R 21344537 intron CG15666 + chr2R_6_21340001 chr2R_21340001 RAL-761 570 chr2R 21370518 21370533 chr2R 21370625 21370640 4 107 2.5 0.0 1.2 1.8 122 chr2R 21370518 intron cv-2 - chr2R 21370579 intron cv-2 - chr2R 21370640 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-761 571 chr2R 21455091 21455117 chr2R 21455454 21455475 8 359 1.0 3.0 2.0 2.7 384 chr2R 21455091 intron Sdc - chr2R 21455283 intron Sdc - chr2R 21455475 intron Sdc - chr2R_8_21455001 chr2R_21455001 RAL-761 572 chr2R 21738275 21738309 chr2R 21747435 21747458 roo 6 9152 0.0 0.5 0.2 5.0 9183 chr2R 21738275 intergenic not near genes chr2R 21742866 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-761 573 chr2R 21753086 21753115 chr2R 21753571 21753596 roo 11 485 8.0 4.0 6.0 1.6 510 chr2R 21753086 intergenic not near genes chr2R 21753341 intergenic not near genes chr2R 21753596 intergenic not near genes chr2R_11_21750001 chr2R_21750001 RAL-761 574 chr2R 21809534 21809551 chr2R 21817773 21817791 roo 4 8240 2.5 3.5 3.0 1.0 8257 chr2R 21809534 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817791 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-761 575 chr2R 21857355 21857371 chr2R 21857446 21857462 8 90 5.0 6.0 5.5 1.2 107 chr2R 21857355 intergenic not near genes chr2R 21857408 intergenic not near genes chr2R 21857462 intergenic not near genes chr2R_8_21855001 chr2R_21855001 RAL-761 576 chr2R 21878548 21878557 chr2R 21878621 21878630 5 78 2.0 1.5 1.8 1.8 82 chr2R 21878548 intron Fili + chr2R 21878589 intron Fili + chr2R 21878630 intron Fili + chr2R_5_21875001 chr2R_21875001 RAL-761 577 chr2R 21935650 21935676 chr2R 21935729 21935755 7 76 3.5 4.5 4.0 1.4 105 chr2R 21935650 intron,exon Fili +,CG43742 - chr2R 21935702 intron,exon Fili +,CG43742 - chr2R 21935755 intron,intron Fili +,CG43742 - chr2R_7_21935001 chr2R_21935001 RAL-761 578 chr2R 22272080 22272103 chr2R 22272182 22272205 9 102 2.5 2.0 2.2 2.8 125 chr2R 22272080 intron dve + chr2R 22272142 intron dve + chr2R 22272205 intron dve + chr2R_9_22270001 chr2R_22270001 RAL-761 579 chr2R 22290083 22290105 chr2R 22290164 22290189 5 83 1.5 1.5 1.5 2.0 106 chr2R 22290083 intergenic not near genes chr2R 22290136 intergenic not near genes chr2R 22290189 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-761 580 chr2R 22312776 22312798 chr2R 22312900 22312923 7 124 4.5 3.0 3.8 1.5 147 chr2R 22312776 intergenic CR44758 + chr2R 22312850 intergenic CR44758 + chr2R 22312923 5` UTR CR44758 + chr2R_7_22310001 chr2R_22310001 RAL-761 581 chr2R 22360380 22360409 chr2R 22360813 22360831 jockey 7 431 2.5 1.5 2.0 2.3 451 chr2R 22360380 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-761 582 chr2R 22503867 22503889 chr2R 22503962 22503983 6 94 0.0 1.5 0.8 3.3 116 chr2R 22503867 intron px - chr2R 22503925 intron px - chr2R 22503983 intron px - chr2R_6_22500001 chr2R_22500001 RAL-761 583 chr2R 22512852 22512879 chr2R 22512932 22512959 11 80 6.5 2.0 4.2 2.1 107 chr2R 22512852 intron px - chr2R 22512906 intron px - chr2R 22512959 intron px - chr2R_11_22510001 chr2R_22510001 RAL-761 584 chr2R 22525754 22525785 chr2R 22529309 22529340 jockey 7 3555 1.0 4.0 2.5 2.0 3586 chr2R 22525754 intron px - chr2R 22527547 intron px - chr2R 22529340 intron px - chr2R_7_22525001 chr2R_22525001 RAL-761 585 chr2R 22574171 22574189 chr2R 22574251 22574269 9 80 0.5 5.0 2.8 2.4 98 chr2R 22574171 intron dnr1 - chr2R 22574220 intron dnr1 - chr2R 22574269 intron dnr1 - chr2R_9_22570001 chr2R_22570001 RAL-761 586 chr2R 22575662 22575692 chr2R 22575741 22575768 10 68 1.5 3.0 2.2 3.1 106 chr2R 22575662 intron dnr1 - chr2R 22575715 intron dnr1 - chr2R 22575768 intron dnr1 - chr2R_10_22575001 chr2R_22575001 RAL-761 587 chr2R 22620829 22620858 chr2R 22620929 22620957 10 99 0.5 0.5 0.5 6.7 128 chr2R 22620829 5` UTR CG33143 + chr2R 22620893 5` UTR CG33143 + chr2R 22620957 5` UTR CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-761 588 chr2R 22623460 22623483 chr2R 22623594 22623623 5 135 4.5 5.0 4.8 0.9 163 chr2R 22623460 intron CG33143 + chr2R 22623542 intron CG33143 + chr2R 22623623 intron CG33143 + chr2R_5_22620001 chr2R_22620001 RAL-761 589 chr2R 22649833 22649857 chr2R 22649920 22649947 10 87 2.5 3.0 2.8 2.6 114 chr2R 22649833 intergenic CG3746 - chr2R 22649890 intergenic CG3746 - chr2R 22649947 intergenic CG3746 - chr2R_10_22645001 chr2R_22645001 RAL-761 590 chr2R 22774965 22775002 chr2R 22775384 22775421 jockey 5 419 4.5 3.0 3.8 1.0 456 chr2R 22774965 intron CG42260 - chr2R 22775193 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-761 591 chr2R 22843039 22843048 chr2R 22845001 22845010 flea 5 1962 4.0 7.5 5.8 0.7 1971 chr2R 22843039 intergenic CG9826 + chr2R 22844024 intergenic not near genes chr2R 22845010 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-761 592 chr2R 22907402 22907435 chr2R 22907495 22907515 13 89 1.5 3.0 2.2 4.1 113 chr2R 22907402 intron nahoda + chr2R 22907458 intron nahoda + chr2R 22907515 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-761 593 chr2R 22941818 22941850 chr2R 22941897 22941928 6 79 0.5 2.0 1.2 2.7 110 chr2R 22941818 intergenic CG42694 + chr2R 22941873 intergenic CG42694 + chr2R 22941928 5` UTR CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-761 594 chr2R 22971504 22971522 chr2R 22971582 22971601 6 78 2.5 3.0 2.8 1.6 97 chr2R 22971504 intergenic not near genes chr2R 22971552 intergenic not near genes chr2R 22971601 intergenic not near genes chr2R_6_22970001 chr2R_22970001 RAL-761 595 chr2R 23029618 23029631 chr2R 23029695 23029708 7 77 3.5 3.5 3.5 1.6 90 chr2R 23029618 intron,intron twi +,CG42741 - chr2R 23029663 intron,intron twi +,CG42741 - chr2R 23029708 intron,intron twi +,CG42741 - chr2R_7_23025001 chr2R_23025001 RAL-761 596 chr2R 23045342 23045354 chr2R 23045556 23045566 5 214 2.5 2.0 2.2 1.6 224 chr2R 23045342 intron twi + chr2R 23045454 intron twi + chr2R 23045566 intron twi + chr2R_5_23045001 chr2R_23045001 RAL-761 597 chr2R 23052650 23052684 chr2R 23052726 23052759 6 75 2.0 1.0 1.5 2.4 109 chr2R 23052650 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052759 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-761 598 chr2R 23061777 23061789 chr2R 23061870 23061883 5 93 2.0 10.5 6.2 0.7 106 chr2R 23061777 3` UTR l(2)06496 - chr2R 23061830 3` UTR l(2)06496 - chr2R 23061883 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-761 599 chr2R 23122829 23122862 chr2R 23123253 23123277 9 420 0.0 4.5 2.2 2.8 448 chr2R 23122829 intergenic not near genes chr2R 23123053 intergenic not near genes chr2R 23123277 intergenic not near genes chr2R_9_23120001 chr2R_23120001 RAL-761 600 chr2R 23175037 23175068 chr2R 23175114 23175145 9 75 2.0 7.5 4.8 1.6 108 chr2R 23175037 intron CG34371 - chr2R 23175091 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_9_23175001 chr2R_23175001 RAL-761 601 chr2R 23219013 23219024 chr2R 23219247 23219263 5 236 6.5 0.0 3.2 1.2 250 chr2R 23219013 intergenic not near genes chr2R 23219138 intergenic not near genes chr2R 23219263 intergenic not near genes chr2R_5_23215001 chr2R_23215001 RAL-761 602 chr2R 23236825 23236993 chr2R 23236916 23237084 6 90 0.0 0.0 0.0 6.0 259 chr2R 23236825 intergenic not near genes chr2R 23236954 intergenic not near genes chr2R 23237084 intergenic not near genes chr2R_6_23235001 chr2R_23235001 RAL-761 603 chr2R 23409787 23409816 chr2R 23409881 23409910 9 93 2.5 2.0 2.2 2.8 123 chr2R 23409787 intergenic not near genes chr2R 23409848 intergenic not near genes chr2R 23409910 intergenic not near genes chr2R_9_23405001 chr2R_23405001 RAL-761 604 chr2R 23423744 23423774 chr2R 23423902 23423931 8 156 2.0 2.5 2.2 2.5 187 chr2R 23423744 intron CG9815 - chr2R 23423838 intron CG9815 - chr2R 23423931 intron CG9815 - chr2R_8_23420001 chr2R_23420001 RAL-761 605 chr2R 23521424 23521432 chr2R 23521519 23521528 4 96 4.0 11.5 7.8 0.5 104 chr2R 23521424 intron RabX1 - chr2R 23521476 intron RabX1 - chr2R 23521528 intron RabX1 - chr2R_4_23520001 chr2R_23520001 RAL-761 606 chr2R 23607037 23607189 chr2R 23607118 23607282 15 84 5.0 1.5 3.2 3.6 245 chr2R 23607037 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607282 intron CG17664 - chr2R_15_23605001 chr2R_23605001 RAL-761 607 chr2R 23653979 23654001 chr2R 23654051 23654078 6 75 2.5 1.0 1.8 2.1 99 chr2R 23653979 3` UTR retn + chr2R 23654028 3` UTR retn + chr2R 23654078 3` UTR retn + chr2R_6_23650001 chr2R_23650001 RAL-761 608 chr2R 23745408 23745423 chr2R 23745484 23745499 5 75 1.5 6.0 3.8 1.0 91 chr2R 23745408 intron egl - chr2R 23745454 intron egl - chr2R 23745499 intron egl - chr2R_5_23745001 chr2R_23745001 RAL-761 609 chr2R 24025708 24025740 chr2R 24025810 24025842 13 102 4.5 2.5 3.5 2.9 134 chr2R 24025708 3` UTR,3` UTR CR45350 -,Adk2 + chr2R 24025775 3` UTR,3` UTR CR45350 -,Adk2 + chr2R 24025842 3` UTR Adk2 + chr2R_13_24025001 chr2R_24025001 RAL-761 610 chr2R 24177235 24177269 chr2R 24184719 24184754 412 7 7485 4.5 1.5 3.0 1.8 7519 chr2R 24177235 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-761 611 chr2R 24287131 24287165 chr2R 24287208 24287242 12 76 1.5 1.5 1.5 4.8 111 chr2R 24287131 intron nvy + chr2R 24287186 intron nvy + chr2R 24287242 intron nvy + chr2R_12_24285001 chr2R_24285001 RAL-761 612 chr2R 24353428 24353458 chr2R 24361789 24361820 roo 11 8361 3.0 4.5 3.8 2.3 8392 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361820 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-761 613 chr2R 24383826 24383857 chr2R 24383907 24383935 7 80 1.0 2.5 1.8 2.5 109 chr2R 24383826 intron mAChR-A - chr2R 24383880 intron mAChR-A - chr2R 24383935 exon mAChR-A - chr2R_7_24380001 chr2R_24380001 RAL-761 614 chr2R 24542595 24542621 chr2R 24542691 24542716 4 96 1.5 0.5 1.0 2.0 121 chr2R 24542595 intron,intron CG4622 -,ITP + chr2R 24542656 intron,intron CG4622 -,ITP + chr2R 24542716 intron,intron CG4622 -,ITP + chr2R_4_24540001 chr2R_24540001 RAL-761 615 chr2R 24629144 24629175 chr2R 24629241 24629277 7 100 4.5 1.0 2.8 1.8 133 chr2R 24629144 intron CG13594 - chr2R 24629210 intron CG13594 - chr2R 24629277 intron CG13594 - chr2R_7_24625001 chr2R_24625001 RAL-761 616 chr2R 24647590 24647616 chr2R 24655147 24655172 412 6 7556 5.5 6.5 6.0 0.9 7582 chr2R 24647590 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-761 617 chr2R 24687641 24687668 chr2R 24687722 24687726 10 82 4.5 5.0 4.8 1.7 85 chr2R 24687641 intergenic Mmp1 - chr2R 24687684 intergenic Mmp1 - chr2R 24687726 intergenic Mmp1 - chr2R_10_24685001 chr2R_24685001 RAL-761 618 chr2R 24719808 24719825 chr2R 24719914 24719937 5 110 3.5 3.5 3.5 1.1 129 chr2R 24719808 intron Mid1 - chr2R 24719872 intron Mid1 - chr2R 24719937 intron Mid1 - chr2R_5_24715001 chr2R_24715001 RAL-761 619 chr2R 24723950 24723978 chr2R 24724064 24724070 5 110 2.5 5.0 3.8 1.0 120 chr2R 24723950 intron Mid1 - chr2R 24724010 intron Mid1 - chr2R 24724070 intron Mid1 - chr2R_5_24720001 chr2R_24720001 RAL-761 620 chr2R 24727884 24727917 chr2R 24735392 24735408 mdg1 8 7505 0.5 1.5 1.0 4.0 7524 chr2R 24727884 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735408 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-761 621 chr2R 24763609 24763643 chr2R 24765585 24765619 G2 6 1974 2.5 2.5 2.5 1.7 2010 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_6_24760001 chr2R_24760001 RAL-761 622 chr2R 25034662 25034684 chr2R 25034757 25034779 5 95 4.0 6.5 5.2 0.8 117 chr2R 25034662 intron Nplp1 + chr2R 25034720 intron Nplp1 + chr2R 25034779 intron Nplp1 + chr2R_5_25030001 chr2R_25030001 RAL-761 623 chr2R 25101274 25101307 chr2R 25101376 25101409 10 101 3.5 1.0 2.2 3.1 135 chr2R 25101274 intron lov - chr2R 25101342 intron lov - chr2R 25101409 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-761 624 chr2R 25104776 25104806 chr2R 25104901 25104927 8 123 2.5 2.0 2.2 2.5 151 chr2R 25104776 intron lov - chr2R 25104852 intron lov - chr2R 25104927 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-761 625 chr2R 25122961 25122985 chr2R 25123040 25123064 6 77 2.5 1.0 1.8 2.1 103 chr2R 25122961 intron lov - chr2R 25123012 intron lov - chr2R 25123064 intron lov - chr2R_6_25120001 chr2R_25120001 RAL-761 626 chr2R 25180763 25180795 chr2R 25180840 25180872 4 77 1.0 0.0 0.5 2.7 109 chr2R 25180763 intergenic not near genes chr2R 25180818 intergenic not near genes chr2R 25180872 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-761 627 chr2R 25181107 25181131 chr2R 25181204 25181228 4 97 2.0 2.5 2.2 1.2 121 chr2R 25181107 intergenic not near genes chr2R 25181168 intergenic not near genes chr2R 25181228 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-761 628 chr2R 25236029 25236044 chr2R 25236140 25236155 5 111 0.5 2.0 1.2 2.3 126 chr2R 25236029 intron CG9380 - chr2R 25236092 intron CG9380 - chr2R 25236155 intron CG9380 - chr2R_5_25235001 chr2R_25235001 RAL-761 629 chr2R 25253442 25253475 chr2R 25253518 25253551 9 75 1.5 3.0 2.2 2.8 109 chr2R 25253442 intron,intron CG9380 -,CG30428 + chr2R 25253496 intron,intron CG9380 -,CG30428 + chr2R 25253551 intron,intron CG9380 -,CG30428 + chr2R_9_25250001 chr2R_25250001 RAL-761 630 chr3L 68996 69015 chr3L 69075 69102 8 84 4.5 4.5 4.5 1.5 106 chr3L 68996 intergenic Lsp1gamma +,CR44510 + chr3L 69049 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-761 631 chr3L 93788 93822 chr3L 93869 93900 6 74 2.5 3.5 3.0 1.5 112 chr3L 93788 intergenic not near genes chr3L 93844 intergenic not near genes chr3L 93900 intergenic not near genes chr3L_6_90001 chr3L_90001 RAL-761 632 chr3L 110218 110239 chr3L 119385 119406 roo 4 9167 3.5 2.5 3.0 1.0 9188 chr3L 110218 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119406 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-761 633 chr3L 402693 402718 chr3L 409744 409771 297 7 7051 1.5 7.0 4.2 1.3 7078 chr3L 402693 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-761 634 chr3L 416146 416158 chr3L 416234 416244 5 87 3.5 3.0 3.2 1.2 98 chr3L 416146 intergenic not near genes chr3L 416195 intergenic not near genes chr3L 416244 intergenic not near genes chr3L_5_415001 chr3L_415001 RAL-761 635 chr3L 459978 460007 chr3L 460054 460084 16 76 1.5 3.0 2.2 5.0 106 chr3L 459978 intron klar - chr3L 460031 intron klar - chr3L 460084 intron klar - chr3L_16_460001 chr3L_460001 RAL-761 636 chr3L 477068 477098 chr3L 477152 477182 8 84 3.5 5.5 4.5 1.5 114 chr3L 477068 intron klar - chr3L 477125 intron klar - chr3L 477182 intron klar - chr3L_8_475001 chr3L_475001 RAL-761 637 chr3L 642469 642502 chr3L 642560 642593 12 89 3.5 4.0 3.8 2.5 124 chr3L 642469 5` UTR CR43334 + chr3L 642531 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_12_640001 chr3L_640001 RAL-761 638 chr3L 701139 701174 chr3L 701232 701239 5 79 1.5 2.0 1.8 1.8 100 chr3L 701139 intergenic not near genes chr3L 701189 intergenic not near genes chr3L 701239 intergenic not near genes chr3L_5_700001 chr3L_700001 RAL-761 639 chr3L 804830 804859 chr3L 804909 804920 6 73 5.0 7.0 6.0 0.9 90 chr3L 804830 intergenic not near genes chr3L 804875 intergenic not near genes chr3L 804920 intergenic not near genes chr3L_6_800001 chr3L_800001 RAL-761 640 chr3L 858001 858015 chr3L 866481 866496 Tirant 7 8479 11.5 4.5 8.0 0.8 8495 chr3L 858001 intergenic not near genes chr3L 862248 intergenic not near genes chr3L 866496 intergenic CG12502 + chr3L_7_860001 chr3L_860001 RAL-761 641 chr3L 899997 900019 chr3L 900081 900103 8 84 0.0 4.0 2.0 2.7 106 chr3L 899997 intergenic not near genes chr3L 900050 intergenic not near genes chr3L 900103 intergenic not near genes chr3L_8_900001 chr3L_900001 RAL-761 642 chr3L 905077 905092 chr3L 905160 905176 5 84 0.0 1.0 0.5 3.3 99 chr3L 905077 intergenic not near genes chr3L 905126 intergenic not near genes chr3L 905176 intergenic not near genes chr3L_5_905001 chr3L_905001 RAL-761 643 chr3L 922171 922177 chr3L 922248 922254 6 77 3.0 2.0 2.5 1.7 83 chr3L 922171 intron Glut1 + chr3L 922212 intron Glut1 + chr3L 922254 intron Glut1 + chr3L_6_920001 chr3L_920001 RAL-761 644 chr3L 925175 925210 chr3L 932601 932636 mdg1 20 7425 1.5 3.5 2.5 5.7 7461 chr3L 925175 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_20_925001 chr3L_925001 RAL-761 645 chr3L 939774 939799 chr3L 940894 940920 jockey 9 1120 4.0 2.5 3.2 2.1 1146 chr3L 939774 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-761 646 chr3L 1021620 1021630 chr3L 1021672 1021704 7 67 3.0 4.5 3.8 1.5 84 chr3L 1021620 intron trio - chr3L 1021662 intron trio - chr3L 1021704 intron trio - chr3L_7_1020001 chr3L_1020001 RAL-761 647 chr3L 1061591 1061603 chr3L 1061696 1061707 5 104 4.5 3.5 4.0 1.0 116 chr3L 1061591 intron bab1 - chr3L 1061649 intron bab1 - chr3L 1061707 intron bab1 - chr3L_5_1060001 chr3L_1060001 RAL-761 648 chr3L 1095020 1095047 chr3L 1095099 1095120 7 75 4.0 3.0 3.5 1.6 100 chr3L 1095020 intron bab1 - chr3L 1095070 intron bab1 - chr3L 1095120 intron bab1 - chr3L_7_1095001 chr3L_1095001 RAL-761 649 chr3L 1103992 1104013 chr3L 1104183 1104204 6 190 2.0 4.0 3.0 1.5 212 chr3L 1103992 intergenic not near genes chr3L 1104098 intergenic not near genes chr3L 1104204 intergenic not near genes chr3L_6_1100001 chr3L_1100001 RAL-761 650 chr3L 1109633 1109667 chr3L 1109721 1109726 14 83 2.0 2.0 2.0 4.7 93 chr3L 1109633 intergenic not near genes chr3L 1109680 intergenic not near genes chr3L 1109726 intergenic not near genes chr3L_14_1105001 chr3L_1105001 RAL-761 651 chr3L 1154138 1154161 chr3L 1163288 1163305 roo 7 9149 2.0 2.0 2.0 2.3 9167 chr3L 1154138 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163305 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-761 652 chr3L 1219596 1219624 chr3L 1227329 1227357 412 8 7731 1.5 5.5 3.5 1.8 7761 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-761 653 chr3L 1286189 1286214 chr3L 1286310 1286336 7 120 2.0 2.0 2.0 2.3 147 chr3L 1286189 intron CG32333 + chr3L 1286262 intron CG32333 + chr3L 1286336 intron CG32333 + chr3L_7_1285001 chr3L_1285001 RAL-761 654 chr3L 1310984 1311013 chr3L 1315844 1315873 8 4864 20.5 27.0 23.8 0.3 4889 chr3L 1310984 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_8_1310001 chr3L_1310001 RAL-761 655 chr3L 1366762 1366795 chr3L 1367774 1367807 15 1010 2.0 2.0 2.0 5.0 1045 chr3L 1366762 intron Ptp61F - chr3L 1367284 intron Ptp61F - chr3L 1367807 intron Ptp61F - chr3L_15_1365001 chr3L_1365001 RAL-761 656 chr3L 1505999 1506033 chr3L 1513596 1513630 17.6 4 7597 2.5 6.5 4.5 0.7 7631 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-761 657 chr3L 1688247 1688265 chr3L 1688376 1688377 4 125 5.0 0.0 2.5 1.1 130 chr3L 1688247 intron CG7991 + chr3L 1688312 intron CG7991 + chr3L 1688377 intron CG7991 + chr3L_4_1685001 chr3L_1685001 RAL-761 658 chr3L 1728519 1728551 chr3L 1728600 1728636 6 84 3.0 3.0 3.0 1.5 117 chr3L 1728519 intron drpr - chr3L 1728578 intron drpr - chr3L 1728636 intron drpr - chr3L_6_1725001 chr3L_1725001 RAL-761 659 chr3L 1848642 1848669 chr3L 1848718 1848747 9 76 3.0 1.5 2.2 2.8 105 chr3L 1848642 intergenic not near genes chr3L 1848694 intergenic not near genes chr3L 1848747 intergenic not near genes chr3L_9_1845001 chr3L_1845001 RAL-761 660 chr3L 1905352 1905375 chr3L 1905446 1905468 5 94 2.0 3.0 2.5 1.4 116 chr3L 1905352 intron CG1887 - chr3L 1905410 intron CG1887 - chr3L 1905468 intron CG1887 - chr3L_5_1905001 chr3L_1905001 RAL-761 661 chr3L 1991121 1991149 chr3L 1991199 1991227 4 78 3.0 1.5 2.2 1.2 106 chr3L 1991121 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991227 intergenic not near genes chr3L_4_1990001 chr3L_1990001 RAL-761 662 chr3L 2013660 2013683 chr3L 2013733 2013761 5 77 3.5 4.5 4.0 1.0 101 chr3L 2013660 intergenic not near genes chr3L 2013710 intergenic not near genes chr3L 2013761 intergenic not near genes chr3L_5_2010001 chr3L_2010001 RAL-761 663 chr3L 2033433 2033461 chr3L 2033518 2033546 5 84 1.5 1.5 1.5 2.0 113 chr3L 2033433 intergenic not near genes chr3L 2033490 intergenic not near genes chr3L 2033546 intergenic not near genes chr3L_5_2030001 chr3L_2030001 RAL-761 664 chr3L 2168781 2168808 chr3L 2168872 2168890 9 88 3.0 5.0 4.0 1.8 109 chr3L 2168781 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168890 intron CG15879 - chr3L_9_2165001 chr3L_2165001 RAL-761 665 chr3L 2254364 2254391 chr3L 2254450 2254481 8 86 1.5 5.0 3.2 1.9 117 chr3L 2254364 intron CG1275 - chr3L 2254422 intron CG1275 - chr3L 2254481 intron CG1275 - chr3L_8_2250001 chr3L_2250001 RAL-761 666 chr3L 2308006 2308034 chr3L 2308112 2308140 8 104 4.5 3.0 3.8 1.7 134 chr3L 2308006 intergenic not near genes chr3L 2308073 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-761 667 chr3L 2447503 2447538 chr3L 2456659 2456669 roo 9 9151 1.5 6.0 3.8 1.9 9166 chr3L 2447503 intron CG45186 + chr3L 2452086 intron CG45186 + chr3L 2456669 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-761 668 chr3L 2533653 2533682 chr3L 2533735 2533764 5 75 1.5 9.0 5.2 0.8 111 chr3L 2533653 intron Spn - chr3L 2533708 intron Spn - chr3L 2533764 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-761 669 chr3L 2631062 2631091 chr3L 2631172 2631201 11 110 3.5 2.5 3.0 2.8 139 chr3L 2631062 intergenic CR45660 - chr3L 2631132 intergenic CR45660 - chr3L 2631201 intergenic not near genes chr3L_11_2630001 chr3L_2630001 RAL-761 670 chr3L 2683947 2683974 chr3L 2684023 2684050 6 76 3.0 3.5 3.2 1.4 103 chr3L 2683947 intron Fife - chr3L 2683998 intron Fife - chr3L 2684050 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-761 671 chr3L 3125779 3125808 chr3L 3125859 3125889 11 81 4.0 1.5 2.8 2.9 110 chr3L 3125779 intron prominin-like - chr3L 3125834 intron prominin-like - chr3L 3125889 intron prominin-like - chr3L_11_3125001 chr3L_3125001 RAL-761 672 chr3L 3259619 3259827 chr3L 3259714 3259927 14 95 0.0 4.0 2.0 4.7 308 chr3L 3259619 intron ckd + chr3L 3259773 intron ckd + chr3L 3259927 intron ckd + chr3L_14_3255001 chr3L_3255001 RAL-761 673 chr3L 3281439 3281478 chr3L 3281935 3281965 Doc 12 495 1.0 5.0 3.0 3.0 526 chr3L 3281439 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281965 intron CG12017 + chr3L_12_3280001 chr3L_3280001 RAL-761 674 chr3L 3341266 3341299 chr3L 3341346 3341379 11 79 2.0 2.0 2.0 3.7 113 chr3L 3341266 intron kst + chr3L 3341322 intron kst + chr3L 3341379 intron kst + chr3L_11_3340001 chr3L_3340001 RAL-761 675 chr3L 3556243 3556278 chr3L 3556339 3556353 8 91 0.0 5.0 2.5 2.3 110 chr3L 3556243 intron Eip63E + chr3L 3556298 intron Eip63E + chr3L 3556353 intron Eip63E + chr3L_8_3555001 chr3L_3555001 RAL-761 676 chr3L 3573167 3573191 chr3L 3573250 3573274 8 82 2.0 1.0 1.5 3.2 107 chr3L 3573167 intron Eip63E + chr3L 3573220 intron Eip63E + chr3L 3573274 intron Eip63E + chr3L_8_3570001 chr3L_3570001 RAL-761 677 chr3L 3585602 3585625 chr3L 3585689 3585717 10 91 0.0 0.5 0.2 8.3 115 chr3L 3585602 intron Eip63E + chr3L 3585660 intron Eip63E + chr3L 3585717 intron Eip63E + chr3L_10_3585001 chr3L_3585001 RAL-761 678 chr3L 3601300 3601331 chr3L 3606611 3606642 copia 19 5310 2.5 3.0 2.8 5.0 5342 chr3L 3601300 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_19_3600001 chr3L_3600001 RAL-761 679 chr3L 3753261 3753291 chr3L 3753354 3753384 5 92 2.5 1.5 2.0 1.7 123 chr3L 3753261 intron CG32264 - chr3L 3753322 intron CG32264 - chr3L 3753384 intron CG32264 - chr3L_5_3750001 chr3L_3750001 RAL-761 680 chr3L 3833748 3833770 chr3L 3833989 3834011 pogo 5 240 1.5 1.0 1.2 2.3 263 chr3L 3833748 intron enc + chr3L 3833880 intron enc + chr3L 3834011 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-761 681 chr3L 3921395 3921425 chr3L 3921659 3921689 19 263 2.5 5.0 3.8 4.0 294 chr3L 3921395 intron Eip63F-1 - chr3L 3921542 intron Eip63F-1 - chr3L 3921689 intron Eip63F-1 - chr3L_19_3920001 chr3L_3920001 RAL-761 682 chr3L 3968045 3968057 chr3L 3968124 3968136 4 79 0.0 0.0 0.0 4.0 91 chr3L 3968045 intergenic not near genes chr3L 3968090 intergenic not near genes chr3L 3968136 intergenic not near genes chr3L_4_3965001 chr3L_3965001 RAL-761 683 chr3L 4015733 4015766 chr3L 4015815 4015849 12 83 6.0 4.0 5.0 2.0 116 chr3L 4015733 intergenic not near genes chr3L 4015791 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_12_4015001 chr3L_4015001 RAL-761 684 chr3L 4401201 4401216 chr3L 4401277 4401291 4 75 1.0 0.5 0.8 2.2 90 chr3L 4401201 intron slow + chr3L 4401246 intron slow + chr3L 4401291 intron slow + chr3L_4_4400001 chr3L_4400001 RAL-761 685 chr3L 4525813 4525819 chr3L 4530394 4530404 7 4582 23.5 7.5 15.5 0.4 4591 chr3L 4525813 intron Tie - chr3L 4528108 intron Tie - chr3L 4530404 intron Tie - chr3L_7_4525001 chr3L_4525001 RAL-761 686 chr3L 4631646 4631667 chr3L 4631722 4631743 7 75 1.5 1.5 1.5 2.8 97 chr3L 4631646 intron axo - chr3L 4631694 intron axo - chr3L 4631743 intron axo - chr3L_7_4630001 chr3L_4630001 RAL-761 687 chr3L 4657908 4657932 chr3L 4658147 4658153 8 236 4.0 4.0 4.0 1.6 245 chr3L 4657908 intron axo - chr3L 4658030 intron axo - chr3L 4658153 intron axo - chr3L_8_4655001 chr3L_4655001 RAL-761 688 chr3L 4738502 4738513 chr3L 4739013 4739025 6 511 1.0 4.5 2.8 1.6 523 chr3L 4738502 intron RhoGEF64C + chr3L 4738764 intron RhoGEF64C + chr3L 4739025 intron RhoGEF64C + chr3L_6_4735001 chr3L_4735001 RAL-761 689 chr3L 4901136 4901155 chr3L 4907326 4907344 diver 8 6190 3.0 1.5 2.2 2.5 6208 chr3L 4901136 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-761 690 chr3L 4907978 4907986 chr3L 4908053 4908062 8 76 0.5 3.5 2.0 2.7 84 chr3L 4907978 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908062 intergenic not near genes chr3L_8_4905001 chr3L_4905001 RAL-761 691 chr3L 4967152 4967176 chr3L 4967259 4967283 7 107 1.5 4.5 3.0 1.8 131 chr3L 4967152 intron Con - chr3L 4967218 intron Con - chr3L 4967283 intron Con - chr3L_7_4965001 chr3L_4965001 RAL-761 692 chr3L 4989176 4989191 chr3L 4989266 4989280 5 89 0.0 1.0 0.5 3.3 104 chr3L 4989176 intron Con - chr3L 4989228 intron Con - chr3L 4989280 intron Con - chr3L_5_4985001 chr3L_4985001 RAL-761 693 chr3L 5034156 5034184 chr3L 5043308 5043321 roo 7 9146 2.5 1.0 1.8 2.5 9165 chr3L 5034156 intron Con - chr3L 5038738 intron Con - chr3L 5043321 intron Con - chr3L_7_5035001 chr3L_5035001 RAL-761 694 chr3L 5045457 5045483 chr3L 5050238 5050264 Doc 6 4781 0.0 2.0 1.0 3.0 4807 chr3L 5045457 intron Con - chr3L 5047860 intron Con - chr3L 5050264 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-761 695 chr3L 5483067 5483088 chr3L 5483184 5483207 8 119 1.0 9.0 5.0 1.3 140 chr3L 5483067 exon CG4835 + chr3L 5483137 exon CG4835 + chr3L 5483207 exon CG4835 + chr3L_8_5480001 chr3L_5480001 RAL-761 696 chr3L 5910039 5910054 chr3L 5910280 5910295 pogo 7 241 2.5 3.0 2.8 1.8 256 chr3L 5910039 intron CG13288 + chr3L 5910167 intron CG13288 + chr3L 5910295 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-761 697 chr3L 5926315 5926346 chr3L 5926502 5926506 11 178 4.5 5.0 4.8 1.9 191 chr3L 5926315 intron Vap-33B + chr3L 5926410 intron Vap-33B + chr3L 5926506 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-761 698 chr3L 5936961 5936994 chr3L 5937050 5937065 10 86 4.5 3.0 3.8 2.1 104 chr3L 5936961 intron CG33993 - chr3L 5937013 intron CG33993 - chr3L 5937065 intron CG33993 - chr3L_10_5935001 chr3L_5935001 RAL-761 699 chr3L 5983832 5983865 chr3L 5983953 5983986 6 120 3.0 0.0 1.5 2.4 154 chr3L 5983832 3` UTR CR45439 - chr3L 5983909 intergenic CR45439 -,CR45440 - chr3L 5983986 intergenic CR45439 -,CR45440 - chr3L_6_5980001 chr3L_5980001 RAL-761 700 chr3L 6052139 6052151 chr3L 6052223 6052237 4 85 0.0 2.0 1.0 2.0 98 chr3L 6052139 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052237 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-761 701 chr3L 6220916 6220948 chr3L 6230064 6230087 roo 11 9148 3.0 4.5 3.8 2.3 9171 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225502 intergenic not near genes chr3L 6230087 intergenic not near genes chr3L_11_6225001 chr3L_6225001 RAL-761 702 chr3L 6358628 6358649 chr3L 6358701 6358726 6 76 3.5 4.0 3.8 1.2 98 chr3L 6358628 intergenic not near genes chr3L 6358677 intergenic not near genes chr3L 6358726 intergenic not near genes chr3L_6_6355001 chr3L_6355001 RAL-761 703 chr3L 6465415 6465438 chr3L 6465607 6465633 9 193 1.0 3.0 2.0 3.0 218 chr3L 6465415 intron CG42747 + chr3L 6465524 intron CG42747 + chr3L 6465633 intron CG42747 + chr3L_9_6465001 chr3L_6465001 RAL-761 704 chr3L 6481772 6481799 chr3L 6481850 6481877 5 78 2.5 2.5 2.5 1.4 105 chr3L 6481772 intron CG42747 + chr3L 6481824 intron CG42747 + chr3L 6481877 intron CG42747 + chr3L_5_6480001 chr3L_6480001 RAL-761 705 chr3L 6524746 6524769 chr3L 6524841 6524863 5 95 1.5 1.0 1.2 2.3 117 chr3L 6524746 intron sfl + chr3L 6524804 intron sfl + chr3L 6524863 intron sfl + chr3L_5_6520001 chr3L_6520001 RAL-761 706 chr3L 6540937 6540958 chr3L 6541020 6541037 4 84 1.5 3.0 2.2 1.2 100 chr3L 6540937 intron sfl + chr3L 6540987 intron sfl + chr3L 6541037 intron sfl + chr3L_4_6540001 chr3L_6540001 RAL-761 707 chr3L 6577328 6577353 chr3L 6577576 6577601 7 248 2.0 2.0 2.0 2.3 273 chr3L 6577328 intron,intron CG18769 +,jv - chr3L 6577464 intron,intron CG18769 +,jv - chr3L 6577601 intron,intron CG18769 +,jv - chr3L_7_6575001 chr3L_6575001 RAL-761 708 chr3L 6652079 6652106 chr3L 6652156 6652184 11 77 3.0 4.5 3.8 2.3 105 chr3L 6652079 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652184 intergenic not near genes chr3L_11_6650001 chr3L_6650001 RAL-761 709 chr3L 6781125 6781155 chr3L 6783139 6783169 Doc 8 2014 2.5 3.5 3.0 2.0 2044 chr3L 6781125 intergenic not near genes chr3L 6782147 intergenic not near genes chr3L 6783169 intergenic not near genes chr3L_8_6780001 chr3L_6780001 RAL-761 710 chr3L 6816353 6816386 chr3L 6816452 6816485 10 99 3.0 0.5 1.8 3.6 132 chr3L 6816353 intergenic not near genes chr3L 6816419 intergenic not near genes chr3L 6816485 intergenic not near genes chr3L_10_6815001 chr3L_6815001 RAL-761 711 chr3L 6887535 6887551 chr3L 6895027 6895043 roo 5 7492 1.5 2.0 1.8 1.8 7508 chr3L 6887535 intergenic not near genes chr3L 6891289 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-761 712 chr3L 6934339 6934363 chr3L 6934449 6934474 7 111 2.0 2.0 2.0 2.3 135 chr3L 6934339 exon CG14820 + chr3L 6934406 intron CG14820 + chr3L 6934474 intron CG14820 + chr3L_7_6930001 chr3L_6930001 RAL-761 713 chr3L 6968385 6968394 chr3L 6968458 6968471 10 76 4.5 4.0 4.2 1.9 86 chr3L 6968385 exon Mis12 - chr3L 6968428 intron Mis12 - chr3L 6968471 intron Mis12 - chr3L_10_6965001 chr3L_6965001 RAL-761 714 chr3L 6974502 6974525 chr3L 6974603 6974626 4 101 0.0 4.0 2.0 1.3 124 chr3L 6974502 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974626 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-761 715 chr3L 7112590 7112603 chr3L 7112677 7112690 6 87 2.0 3.0 2.5 1.7 100 chr3L 7112590 intron form3 + chr3L 7112640 intron form3 + chr3L 7112690 intron form3 + chr3L_6_7110001 chr3L_7110001 RAL-761 716 chr3L 7150875 7150902 chr3L 7150951 7150978 8 76 0.5 1.0 0.8 4.4 103 chr3L 7150875 intron corn - chr3L 7150926 intron corn - chr3L 7150978 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-761 717 chr3L 7257523 7257556 chr3L 7257640 7257673 8 116 0.5 2.5 1.5 3.2 150 chr3L 7257523 intron CG14830 - chr3L 7257598 intron CG14830 - chr3L 7257673 intron CG14830 - chr3L_8_7255001 chr3L_7255001 RAL-761 718 chr3L 7264785 7264894 chr3L 7264881 7264975 8 87 0.5 0.5 0.5 5.3 190 chr3L 7264785 intergenic not near genes chr3L 7264880 intergenic not near genes chr3L 7264975 intergenic not near genes chr3L_8_7260001 chr3L_7260001 RAL-761 719 chr3L 7285456 7285473 chr3L 7285531 7285551 8 78 3.0 5.0 4.0 1.6 95 chr3L 7285456 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285551 intron unc-13-4A - chr3L_8_7285001 chr3L_7285001 RAL-761 720 chr3L 7287730 7287749 chr3L 7288105 7288123 7 375 5.0 1.5 3.2 1.7 393 chr3L 7287730 intron unc-13-4A - chr3L 7287926 intron unc-13-4A - chr3L 7288123 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-761 721 chr3L 7291118 7291135 chr3L 7291207 7291218 6 88 2.0 0.0 1.0 3.0 100 chr3L 7291118 intron unc-13-4A - chr3L 7291168 intron unc-13-4A - chr3L 7291218 intron unc-13-4A - chr3L_6_7290001 chr3L_7290001 RAL-761 722 chr3L 7377316 7377344 chr3L 7380421 7380449 297 6 3105 1.5 4.0 2.8 1.6 3133 chr3L 7377316 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380449 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-761 723 chr3L 7462965 7462988 chr3L 7463042 7463061 4 76 0.5 1.5 1.0 2.0 96 chr3L 7462965 intergenic not near genes chr3L 7463013 intergenic not near genes chr3L 7463061 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-761 724 chr3L 7488866 7488885 chr3L 7488947 7488966 4 80 1.5 0.5 1.0 2.0 100 chr3L 7488866 intergenic not near genes chr3L 7488916 intergenic not near genes chr3L 7488966 intergenic not near genes chr3L_4_7485001 chr3L_7485001 RAL-761 725 chr3L 7493038 7493070 chr3L 7493490 7493522 4 450 2.5 1.5 2.0 1.3 484 chr3L 7493038 exon Cyp316a1 + chr3L 7493280 exon Cyp316a1 + chr3L 7493522 intergenic Cyp4d8 -,Cyp316a1 + chr3L_4_7490001 chr3L_7490001 RAL-761 726 chr3L 7498752 7498792 chr3L 7503531 7503569 F-element 5 4778 1.5 0.0 0.8 2.8 4817 chr3L 7498752 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503569 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-761 727 chr3L 7793710 7793743 chr3L 7800762 7800795 297 7 7052 2.5 1.5 2.0 2.3 7085 chr3L 7793710 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800795 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-761 728 chr3L 7876108 7876127 chr3L 7876187 7876206 5 79 0.0 0.0 0.0 5.0 98 chr3L 7876108 intron CG32365 + chr3L 7876157 intron CG32365 + chr3L 7876206 intron CG32365 + chr3L_5_7875001 chr3L_7875001 RAL-761 729 chr3L 7886513 7886547 chr3L 7889031 7889065 Stalker4 9 2512 0.5 1.0 0.8 5.0 2552 chr3L 7886513 intron CG32365 + chr3L 7887789 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-761 730 chr3L 7985370 7985393 chr3L 7987697 7987705 NOF 4 2319 4.0 3.5 3.8 0.8 2335 chr3L 7985370 intron nmo + chr3L 7986538 intron nmo + chr3L 7987705 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-761 731 chr3L 8019729 8019732 chr3L 8024113 8024148 NOF 4 4400 2.0 1.0 1.5 1.6 4419 chr3L 8019729 intron nmo + chr3L 8021938 intron nmo + chr3L 8024148 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-761 732 chr3L 8208140 8208157 chr3L 8208266 8208289 7 130 3.0 3.0 3.0 1.8 149 chr3L 8208140 intergenic not near genes chr3L 8208214 intergenic not near genes chr3L 8208289 intergenic not near genes chr3L_7_8205001 chr3L_8205001 RAL-761 733 chr3L 8226735 8226749 chr3L 8226834 8226844 5 98 1.5 0.0 0.8 2.8 109 chr3L 8226735 intergenic not near genes chr3L 8226790 intergenic not near genes chr3L 8226844 intergenic not near genes chr3L_5_8225001 chr3L_8225001 RAL-761 734 chr3L 8498301 8498321 chr3L 8505766 8505788 blood 5 7467 1.5 3.5 2.5 1.4 7487 chr3L 8498301 intron CG43163 - chr3L 8502044 intron CG43163 - chr3L 8505788 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-761 735 chr3L 8577299 8577321 chr3L 8577402 8577426 13 103 4.5 6.0 5.2 2.1 127 chr3L 8577299 5` UTR CG43078 + chr3L 8577362 5` UTR CG43078 + chr3L 8577426 5` UTR CG43078 + chr3L_13_8575001 chr3L_8575001 RAL-761 736 chr3L 8643587 8643602 chr3L 8643661 8643678 5 76 2.5 1.0 1.8 1.8 91 chr3L 8643587 intergenic Cpr66D + chr3L 8643632 intergenic Cpr66D + chr3L 8643678 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-761 737 chr3L 8682617 8682646 chr3L 8682700 8682733 10 86 1.5 3.0 2.2 3.1 116 chr3L 8682617 intergenic not near genes chr3L 8682675 intergenic not near genes chr3L 8682733 intergenic not near genes chr3L_10_8680001 chr3L_8680001 RAL-761 738 chr3L 8791274 8791296 chr3L 8796694 8796712 I-element 5 5419 4.5 0.5 2.5 1.4 5438 chr3L 8791274 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796712 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-761 739 chr3L 8830751 8830784 chr3L 8830852 8830883 20 100 3.0 4.5 3.8 4.2 132 chr3L 8830751 intron dally + chr3L 8830817 intron dally + chr3L 8830883 intron dally + chr3L_20_8830001 chr3L_8830001 RAL-761 740 chr3L 8839734 8839747 chr3L 8839806 8839821 4 75 1.5 1.0 1.2 1.8 87 chr3L 8839734 intron dally + chr3L 8839778 intron dally + chr3L 8839821 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-761 741 chr3L 8853354 8853385 chr3L 8853434 8853466 5 79 1.5 4.0 2.8 1.3 112 chr3L 8853354 intron dally + chr3L 8853410 intron dally + chr3L 8853466 intron dally + chr3L_5_8850001 chr3L_8850001 RAL-761 742 chr3L 8861523 8861549 chr3L 8861614 8861640 7 90 1.0 0.5 0.8 3.9 117 chr3L 8861523 intron dally + chr3L 8861582 intron dally + chr3L 8861640 intron dally + chr3L_7_8860001 chr3L_8860001 RAL-761 743 chr3L 9076925 9076956 chr3L 9084485 9084516 412 15 7556 3.0 3.5 3.2 3.6 7591 chr3L 9076925 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084516 exon Tequila + chr3L_15_9080001 chr3L_9080001 RAL-761 744 chr3L 9128199 9128214 chr3L 9128284 9128299 4 85 3.5 4.0 3.8 0.8 100 chr3L 9128199 intron bol - chr3L 9128249 intron bol - chr3L 9128299 intron bol - chr3L_4_9125001 chr3L_9125001 RAL-761 745 chr3L 9130556 9130580 chr3L 9134317 9134340 412 8 3760 7.5 1.5 4.5 1.5 3784 chr3L 9130556 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-761 746 chr3L 9219242 9219282 chr3L 9219911 9219925 jockey 14 664 3.0 2.5 2.8 3.7 683 chr3L 9219242 intergenic not near genes chr3L 9219584 intergenic not near genes chr3L 9219925 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-761 747 chr3L 9412043 9412077 chr3L 9415194 9415194 9 3147 18.0 11.5 14.8 0.6 3151 chr3L 9412043 intron CG3689 + chr3L 9413618 3` UTR,3` UTR CG3689 +,CG3967 - chr3L 9415194 intron CG3967 - chr3L_9_9410001 chr3L_9410001 RAL-761 748 chr3L 9411911 9411933 chr3L 9415577 9415606 6 3668 20.5 6.0 13.2 0.4 3695 chr3L 9411911 exon CG3689 + chr3L 9413758 3` UTR CG3967 - chr3L 9415606 intron CG3967 - chr3L_6_9410001 chr3L_9410001 RAL-761 749 chr3L 9443527 9443540 chr3L 9445317 9445331 S-element 6 1790 1.5 4.5 3.0 1.5 1804 chr3L 9443527 intron CG33926 + chr3L 9444429 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_6_9440001 chr3L_9440001 RAL-761 750 chr3L 9513454 9513473 chr3L 9513539 9513560 7 84 2.0 3.0 2.5 2.0 106 chr3L 9513454 intergenic CG33702 - chr3L 9513507 intergenic CG33702 - chr3L 9513560 intergenic CG33702 - chr3L_7_9510001 chr3L_9510001 RAL-761 751 chr3L 9545883 9545903 chr3L 9545963 9545980 6 81 2.0 3.5 2.8 1.6 97 chr3L 9545883 intergenic not near genes chr3L 9545932 intergenic not near genes chr3L 9545980 intergenic not near genes chr3L_6_9545001 chr3L_9545001 RAL-761 752 chr3L 9575904 9575943 chr3L 9580984 9581023 jockey 8 5079 3.5 3.5 3.5 1.8 5119 chr3L 9575904 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-761 753 chr3L 9635577 9635603 chr3L 9635653 9635680 9 77 2.0 2.5 2.2 2.8 103 chr3L 9635577 intron fry - chr3L 9635628 intron fry - chr3L 9635680 exon fry - chr3L_9_9635001 chr3L_9635001 RAL-761 754 chr3L 10003154 10003176 chr3L 10003251 10003273 4 97 0.5 1.0 0.8 2.2 119 chr3L 10003154 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003273 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-761 755 chr3L 9909688 9909690 chr3L 10127857 10127859 4 218169 3.5 6.0 4.8 0.7 218171 chr3L 9909688 intron CG34356 + chr3L 10018774 intron dpr6 + chr3L 10127859 intron dpr6 + chr3L_4_10015001 chr3L_10015001 RAL-761 756 chr3L 10214730 10214828 chr3L 10214817 10214930 9 95 0.0 0.0 0.0 9.0 200 chr3L 10214730 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-761 757 chr3L 10222744 10222777 chr3L 10222824 10222857 4 80 0.0 1.5 0.8 2.2 113 chr3L 10222744 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222857 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-761 758 chr3L 10308740 10308773 chr3L 10308817 10308850 11 77 4.0 2.0 3.0 2.8 110 chr3L 10308740 intergenic not near genes chr3L 10308795 intergenic not near genes chr3L 10308850 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-761 759 chr3L 10314485 10314502 chr3L 10314563 10314582 5 79 2.5 1.0 1.8 1.8 97 chr3L 10314485 intergenic not near genes chr3L 10314534 intergenic not near genes chr3L 10314582 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-761 760 chr3L 10348654 10348668 chr3L 10348771 10348785 6 117 3.5 0.0 1.8 2.1 131 chr3L 10348654 intron CR44327 + chr3L 10348720 intron CR44327 + chr3L 10348785 intron CR44327 + chr3L_6_10345001 chr3L_10345001 RAL-761 761 chr3L 10414948 10414977 chr3L 10417312 10417345 Doc 7 2368 1.0 1.0 1.0 3.5 2397 chr3L 10414948 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417345 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-761 762 chr3L 10421357 10421381 chr3L 10421513 10421530 5 153 0.5 2.5 1.5 2.0 173 chr3L 10421357 intergenic not near genes chr3L 10421444 intergenic not near genes chr3L 10421530 intergenic not near genes chr3L_5_10420001 chr3L_10420001 RAL-761 763 chr3L 10430075 10430101 chr3L 10430152 10430178 5 76 1.0 1.5 1.2 2.3 103 chr3L 10430075 3` UTR Ir67b - chr3L 10430126 3` UTR Ir67b - chr3L 10430178 3` UTR Ir67b - chr3L_5_10430001 chr3L_10430001 RAL-761 764 chr3L 10456008 10456028 chr3L 10456200 10456220 5 192 3.0 2.5 2.8 1.3 212 chr3L 10456008 intergenic not near genes chr3L 10456114 intergenic not near genes chr3L 10456220 intergenic not near genes chr3L_5_10455001 chr3L_10455001 RAL-761 765 chr3L 10456755 10456768 chr3L 10456836 10456859 8 90 0.5 2.5 1.5 3.2 104 chr3L 10456755 intergenic not near genes chr3L 10456807 intergenic not near genes chr3L 10456859 intergenic not near genes chr3L_8_10455001 chr3L_10455001 RAL-761 766 chr3L 10469932 10469965 chr3L 10470006 10470041 6 76 1.0 2.5 1.8 2.1 109 chr3L 10469932 intergenic not near genes chr3L 10469986 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_6_10465001 chr3L_10465001 RAL-761 767 chr3L 10553107 10553129 chr3L 10553189 10553210 5 82 1.0 4.0 2.5 1.4 103 chr3L 10553107 intron A2bp1 + chr3L 10553158 intron A2bp1 + chr3L 10553210 intron A2bp1 + chr3L_5_10550001 chr3L_10550001 RAL-761 768 chr3L 10658081 10658208 chr3L 10658158 10658334 9 110 0.5 0.5 0.5 6.0 253 chr3L 10658081 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-761 769 chr3L 10694922 10694933 chr3L 10695014 10695025 6 92 2.0 3.0 2.5 1.7 103 chr3L 10694922 intron NijA - chr3L 10694974 intron NijA - chr3L 10695025 exon NijA - chr3L_6_10690001 chr3L_10690001 RAL-761 770 chr3L 10721997 10722020 chr3L 10722079 10722102 10 81 2.0 0.0 1.0 5.0 105 chr3L 10721997 intergenic not near genes chr3L 10722050 intergenic not near genes chr3L 10722102 intergenic not near genes chr3L_10_10720001 chr3L_10720001 RAL-761 771 chr3L 10778826 10778837 chr3L 10778893 10778913 6 74 0.0 2.5 1.2 2.7 87 chr3L 10778826 intergenic not near genes chr3L 10778870 intergenic not near genes chr3L 10778913 intergenic not near genes chr3L_6_10775001 chr3L_10775001 RAL-761 772 chr3L 11083506 11083526 chr3L 11083604 11083624 4 98 4.5 2.0 3.2 1.0 118 chr3L 11083506 intron JIL-1 - chr3L 11083565 intron JIL-1 - chr3L 11083624 intron JIL-1 - chr3L_4_11080001 chr3L_11080001 RAL-761 773 chr3L 11087057 11087090 chr3L 11088846 11088878 S-element 11 1788 0.5 2.5 1.5 4.4 1821 chr3L 11087057 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_11_11085001 chr3L_11085001 RAL-761 774 chr3L 11127211 11127290 chr3L 11127288 11127367 4 77 0.0 0.0 0.0 4.0 156 chr3L 11127211 intron CG42575 + chr3L 11127289 intron CG42575 + chr3L 11127367 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-761 775 chr3L 11135532 11135804 chr3L 11135762 11135889 10 98 0.5 0.5 0.5 6.7 357 chr3L 11135532 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135889 intergenic CG32082 +,CG14143 + chr3L_10_11135001 chr3L_11135001 RAL-761 776 chr3L 11290624 11290645 chr3L 11290947 11290968 10 322 5.0 5.0 5.0 1.7 344 chr3L 11290624 intron CG6175 - chr3L 11290796 intron CG6175 - chr3L 11290968 intron CG6175 - chr3L_10_11290001 chr3L_11290001 RAL-761 777 chr3L 11329687 11329719 chr3L 11332892 11332924 jockey 4 3196 5.5 1.5 3.5 0.9 3237 chr3L 11329687 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332924 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-761 778 chr3L 11359808 11359832 chr3L 11359948 11359972 8 139 5.5 3.0 4.2 1.5 164 chr3L 11359808 intergenic not near genes chr3L 11359890 intergenic not near genes chr3L 11359972 intergenic not near genes chr3L_8_11355001 chr3L_11355001 RAL-761 779 chr3L 11385597 11385618 chr3L 11385841 11385863 8 244 2.5 1.5 2.0 2.7 266 chr3L 11385597 intergenic not near genes chr3L 11385730 intergenic not near genes chr3L 11385863 intergenic not near genes chr3L_8_11385001 chr3L_11385001 RAL-761 780 chr3L 11443821 11443847 chr3L 11443908 11443919 4 84 1.5 1.0 1.2 1.8 98 chr3L 11443821 intergenic not near genes chr3L 11443870 intergenic not near genes chr3L 11443919 intergenic not near genes chr3L_4_11440001 chr3L_11440001 RAL-761 781 chr3L 11548854 11548860 chr3L 11548941 11548947 5 87 1.5 2.0 1.8 1.8 93 chr3L 11548854 intron Mob2 - chr3L 11548900 intron Mob2 - chr3L 11548947 intron Mob2 - chr3L_5_11545001 chr3L_11545001 RAL-761 782 chr3L 11548861 11548880 chr3L 11548936 11548966 9 84 0.5 2.0 1.2 4.1 105 chr3L 11548861 intron Mob2 - chr3L 11548914 intron Mob2 - chr3L 11548966 intron Mob2 - chr3L_9_11545001 chr3L_11545001 RAL-761 783 chr3L 11564788 11564811 chr3L 11572404 11572436 412 5 7617 1.0 2.5 1.8 1.8 7648 chr3L 11564788 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-761 784 chr3L 11579555 11579585 chr3L 11579661 11579690 9 106 2.5 2.0 2.2 2.8 135 chr3L 11579555 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_9_11575001 chr3L_11575001 RAL-761 785 chr3L 11590761 11590775 chr3L 11590842 11590855 5 81 0.0 2.0 1.0 2.5 94 chr3L 11590761 intergenic CG33268 - chr3L 11590808 intergenic CG33268 - chr3L 11590855 intergenic CG33268 - chr3L_5_11590001 chr3L_11590001 RAL-761 786 chr3L 11659431 11659453 chr3L 11659753 11659778 7 323 1.5 1.0 1.2 3.2 347 chr3L 11659431 intron CG32085 - chr3L 11659604 intron CG32085 - chr3L 11659778 intron CG32085 - chr3L_7_11655001 chr3L_11655001 RAL-761 787 chr3L 11663751 11663755 chr3L 11663876 11663880 5 125 1.5 0.5 1.0 2.5 129 chr3L 11663751 intron CG32085 - chr3L 11663816 intron CG32085 - chr3L 11663880 intron CG32085 - chr3L_5_11660001 chr3L_11660001 RAL-761 788 chr3L 11678107 11678124 chr3L 11678194 11678211 5 87 1.0 3.0 2.0 1.7 104 chr3L 11678107 intron CG32085 - chr3L 11678159 intron CG32085 - chr3L 11678211 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-761 789 chr3L 11723081 11723116 chr3L 11727876 11727911 Doc 7 4795 1.0 0.5 0.8 3.9 4830 chr3L 11723081 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-761 790 chr3L 11744017 11744040 chr3L 11744125 11744148 6 108 4.0 0.0 2.0 2.0 131 chr3L 11744017 exon CG6024 - chr3L 11744082 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-761 791 chr3L 11846405 11846413 chr3L 11846513 11846521 4 108 0.0 1.0 0.5 2.7 116 chr3L 11846405 intergenic not near genes chr3L 11846463 intergenic not near genes chr3L 11846521 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-761 792 chr3L 11850144 11850171 chr3L 11850237 11850266 8 94 1.0 0.0 0.5 5.3 122 chr3L 11850144 intergenic not near genes chr3L 11850205 intergenic CG44837 - chr3L 11850266 intergenic CG44837 - chr3L_8_11850001 chr3L_11850001 RAL-761 793 chr3L 11864560 11864583 chr3L 11865855 11865876 pogo 9 1294 2.0 2.5 2.2 2.8 1316 chr3L 11864560 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865876 intron CG44837 - chr3L_9_11865001 chr3L_11865001 RAL-761 794 chr3L 11887258 11887268 chr3L 11887355 11887365 5 96 1.5 3.0 2.2 1.6 107 chr3L 11887258 intron,3` UTR CG44837 -,CG5897 - chr3L 11887312 intron,3` UTR CG44837 -,CG5897 - chr3L 11887365 intron,3` UTR CG44837 -,CG5897 - chr3L_5_11885001 chr3L_11885001 RAL-761 795 chr3L 12013912 12013938 chr3L 12014003 12014029 9 90 5.0 0.5 2.8 2.4 117 chr3L 12013912 intron rols - chr3L 12013970 intron rols - chr3L 12014029 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-761 796 chr3L 12097522 12097555 chr3L 12097610 12097642 4 87 0.0 1.0 0.5 2.7 120 chr3L 12097522 intergenic not near genes chr3L 12097582 intergenic not near genes chr3L 12097642 intergenic not near genes chr3L_4_12095001 chr3L_12095001 RAL-761 797 chr3L 12231372 12231400 chr3L 12231689 12231701 5 303 20.5 22.5 21.5 0.2 329 chr3L 12231372 intron app - chr3L 12231536 intron app - chr3L 12231701 intron app - chr3L_5_12230001 chr3L_12230001 RAL-761 798 chr3L 12352134 12352153 chr3L 12352228 12352249 7 97 3.0 2.0 2.5 2.0 115 chr3L 12352134 intergenic not near genes chr3L 12352192 intergenic not near genes chr3L 12352249 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-761 799 chr3L 12353942 12353948 chr3L 12354017 12354037 4 85 1.5 3.5 2.5 1.1 95 chr3L 12353942 intergenic not near genes chr3L 12353990 intergenic not near genes chr3L 12354037 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-761 800 chr3L 12565360 12565390 chr3L 12565472 12565504 9 114 2.5 3.0 2.8 2.4 144 chr3L 12565360 intron sowah - chr3L 12565432 intron sowah - chr3L 12565504 intron sowah - chr3L_9_12565001 chr3L_12565001 RAL-761 801 chr3L 12578054 12578060 chr3L 12578142 12578147 4 88 2.0 0.0 1.0 2.0 93 chr3L 12578054 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578147 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-761 802 chr3L 12626153 12626159 chr3L 12626262 12626262 4 108 1.0 0.5 0.8 2.2 109 chr3L 12626153 intergenic not near genes chr3L 12626208 intergenic not near genes chr3L 12626262 intergenic not near genes chr3L_4_12625001 chr3L_12625001 RAL-761 803 chr3L 12801996 12802012 chr3L 12802059 12802088 5 70 2.0 3.0 2.5 1.4 92 chr3L 12801996 intron Atg1 - chr3L 12802042 intron Atg1 - chr3L 12802088 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-761 804 chr3L 12874937 12874962 chr3L 12877223 12877254 jockey 9 2291 2.5 2.0 2.2 2.8 2317 chr3L 12874937 intergenic not near genes chr3L 12876096 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-761 805 chr3L 12896234 12896262 chr3L 12896312 12896317 6 67 5.0 1.0 3.0 1.5 83 chr3L 12896234 intergenic not near genes chr3L 12896276 intergenic not near genes chr3L 12896317 intergenic not near genes chr3L_6_12895001 chr3L_12895001 RAL-761 806 chr3L 12898894 12898910 chr3L 12898960 12898986 5 71 1.0 4.5 2.8 1.3 92 chr3L 12898894 intergenic not near genes chr3L 12898940 intergenic not near genes chr3L 12898986 intergenic not near genes chr3L_5_12895001 chr3L_12895001 RAL-761 807 chr3L 12919278 12919303 chr3L 12924762 12924762 Rt1c 13 5480 3.0 3.5 3.2 3.1 5484 chr3L 12919278 intergenic not near genes chr3L 12922020 intergenic not near genes chr3L 12924762 intergenic not near genes chr3L_13_12920001 chr3L_12920001 RAL-761 808 chr3L 12928216 12928232 chr3L 12928342 12928359 7 126 1.5 1.0 1.2 3.2 143 chr3L 12928216 intergenic not near genes chr3L 12928288 intergenic not near genes chr3L 12928359 intergenic not near genes chr3L_7_12925001 chr3L_12925001 RAL-761 809 chr3L 12957788 12957818 chr3L 12962269 12962300 copia 11 4479 1.5 4.5 3.0 2.8 4512 chr3L 12957788 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_11_12960001 chr3L_12960001 RAL-761 810 chr3L 12978756 12978779 chr3L 12978835 12978858 4 79 1.0 0.5 0.8 2.2 102 chr3L 12978756 intergenic not near genes chr3L 12978807 intergenic not near genes chr3L 12978858 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-761 811 chr3L 12998570 12998597 chr3L 12998789 12998816 5 219 4.0 3.5 3.8 1.0 246 chr3L 12998570 intergenic not near genes chr3L 12998693 intergenic not near genes chr3L 12998816 intergenic not near genes chr3L_5_12995001 chr3L_12995001 RAL-761 812 chr3L 13007703 13007720 chr3L 13007781 13007799 6 77 2.5 2.0 2.2 1.9 96 chr3L 13007703 exon CG11263 + chr3L 13007751 3` UTR CG11263 + chr3L 13007799 3` UTR CG11263 + chr3L_6_13005001 chr3L_13005001 RAL-761 813 chr3L 13031579 13031604 chr3L 13031666 13031691 8 86 1.0 1.0 1.0 4.0 112 chr3L 13031579 intron CG17672 + chr3L 13031635 intron CG17672 + chr3L 13031691 intron CG17672 + chr3L_8_13030001 chr3L_13030001 RAL-761 814 chr3L 13047758 13047775 chr3L 13047835 13047855 4 79 1.0 3.0 2.0 1.3 97 chr3L 13047758 3` UTR CG11279 + chr3L 13047806 3` UTR CG11279 + chr3L 13047855 3` UTR CG11279 + chr3L_4_13045001 chr3L_13045001 RAL-761 815 chr3L 13093829 13093851 chr3L 13093905 13093926 4 76 4.5 4.0 4.2 0.8 97 chr3L 13093829 intergenic not near genes chr3L 13093878 intergenic not near genes chr3L 13093926 intergenic not near genes chr3L_4_13090001 chr3L_13090001 RAL-761 816 chr3L 13137943 13137961 chr3L 13138030 13138049 8 86 1.5 3.0 2.2 2.5 106 chr3L 13137943 intergenic not near genes chr3L 13137996 intergenic not near genes chr3L 13138049 intergenic not near genes chr3L_8_13135001 chr3L_13135001 RAL-761 817 chr3L 13223215 13223237 chr3L 13223292 13223314 4 77 0.0 3.5 1.8 1.4 99 chr3L 13223215 intergenic not near genes chr3L 13223264 intergenic not near genes chr3L 13223314 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-761 818 chr3L 13296523 13296531 chr3L 13296614 13296617 6 90 9.5 1.5 5.5 0.9 94 chr3L 13296523 intergenic Sfp70A4 -,CR45253 + chr3L 13296570 3` UTR Sfp70A4 - chr3L 13296617 3` UTR Sfp70A4 - chr3L_6_13295001 chr3L_13295001 RAL-761 819 chr3L 13525166 13525190 chr3L 13532951 13532985 roo 7 7793 4.5 9.0 6.8 0.9 7819 chr3L 13525166 intergenic not near genes chr3L 13529076 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-761 820 chr3L 13629533 13629545 chr3L 13629642 13629656 4 110 3.5 4.0 3.8 0.8 123 chr3L 13629533 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629656 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-761 821 chr3L 13680203 13680218 chr3L 13680393 13680405 4 188 0.5 2.0 1.2 1.8 202 chr3L 13680203 intron bru-3 - chr3L 13680304 intron bru-3 - chr3L 13680405 intron bru-3 - chr3L_4_13680001 chr3L_13680001 RAL-761 822 chr3L 13720577 13720609 chr3L 13720689 13720717 8 112 3.5 4.0 3.8 1.7 140 chr3L 13720577 intron bru-3 - chr3L 13720647 intron bru-3 - chr3L 13720717 intron bru-3 - chr3L_8_13720001 chr3L_13720001 RAL-761 823 chr3L 13740035 13740052 chr3L 13740126 13740146 5 92 4.0 3.0 3.5 1.1 111 chr3L 13740035 intron bru-3 - chr3L 13740090 intron bru-3 - chr3L 13740146 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-761 824 chr3L 13804549 13804565 chr3L 13822835 13822840 roo 5 18284 2.0 3.0 2.5 1.4 18291 chr3L 13804549 intergenic not near genes chr3L 13813694 intergenic not near genes chr3L 13822840 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-761 825 chr3L 14236050 14236077 chr3L 14236187 14236214 5 137 4.0 1.0 2.5 1.4 164 chr3L 14236050 intergenic CG34244 - chr3L 14236132 intergenic CG34244 - chr3L 14236214 intergenic CG34244 -,CG7906 + chr3L_5_14235001 chr3L_14235001 RAL-761 826 chr3L 14245577 14245592 chr3L 14245661 14245684 1360 6 92 1.0 3.0 2.0 2.0 107 chr3L 14245577 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-761 827 chr3L 14267377 14267400 chr3L 14271816 14271818 F-element 5 4435 3.5 3.5 3.5 1.1 4441 chr3L 14267377 intergenic not near genes chr3L 14269598 intergenic not near genes chr3L 14271818 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-761 828 chr3L 14295990 14296003 chr3L 14296475 14296486 roo 6 484 2.5 1.5 2.0 2.0 496 chr3L 14295990 intron fz + chr3L 14296238 intron fz + chr3L 14296486 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-761 829 chr3L 14312039 14312057 chr3L 14316853 14316860 X-element 4 4811 0.0 4.5 2.2 1.2 4821 chr3L 14312039 exon fz + chr3L 14314450 intron fz + chr3L 14316860 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-761 830 chr3L 14326967 14326992 chr3L 14327103 14327128 6 136 2.0 1.5 1.8 2.1 161 chr3L 14326967 intron fz + chr3L 14327048 intron fz + chr3L 14327128 intron fz + chr3L_6_14325001 chr3L_14325001 RAL-761 831 chr3L 14356519 14356553 chr3L 14356598 14356630 16 79 5.0 3.0 4.0 3.2 111 chr3L 14356519 intron fz + chr3L 14356574 intron fz + chr3L 14356630 intron fz + chr3L_16_14355001 chr3L_14355001 RAL-761 832 chr3L 14359551 14359580 chr3L 14359631 14359651 8 76 1.5 1.5 1.5 3.2 100 chr3L 14359551 intron fz + chr3L 14359601 intron fz + chr3L 14359651 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-761 833 chr3L 14417907 14417933 chr3L 14417983 14418009 8 75 4.0 11.0 7.5 0.9 102 chr3L 14417907 intron bbg - chr3L 14417958 intron bbg - chr3L 14418009 intron bbg - chr3L_8_14415001 chr3L_14415001 RAL-761 834 chr3L 14437879 14437913 chr3L 14437973 14438007 9 94 1.0 2.5 1.8 3.2 128 chr3L 14437879 intron bbg - chr3L 14437943 intron bbg - chr3L 14438007 intron bbg - chr3L_9_14435001 chr3L_14435001 RAL-761 835 chr3L 14448459 14448479 chr3L 14448540 14448560 5 81 1.0 2.0 1.5 2.0 101 chr3L 14448459 intron bbg - chr3L 14448510 intron bbg - chr3L 14448560 intron bbg - chr3L_5_14445001 chr3L_14445001 RAL-761 836 chr3L 14453699 14453723 chr3L 14453780 14453804 5 82 0.0 3.5 1.8 1.8 105 chr3L 14453699 intron bbg - chr3L 14453752 intron bbg - chr3L 14453804 intron bbg - chr3L_5_14450001 chr3L_14450001 RAL-761 837 chr3L 14468445 14468478 chr3L 14473650 14473677 copia 6 5204 1.0 0.5 0.8 3.3 5232 chr3L 14468445 intron bbg - chr3L 14471061 intron bbg - chr3L 14473677 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-761 838 chr3L 14532616 14532648 chr3L 14533038 14533041 10 417 2.0 3.0 2.5 2.9 425 chr3L 14532616 intron bbg - chr3L 14532828 intron bbg - chr3L 14533041 intron bbg - chr3L_10_14530001 chr3L_14530001 RAL-761 839 chr3L 14555508 14555519 chr3L 14555600 14555611 4 92 4.0 1.0 2.5 1.1 103 chr3L 14555508 intergenic not near genes chr3L 14555560 intergenic not near genes chr3L 14555611 intergenic not near genes chr3L_4_14555001 chr3L_14555001 RAL-761 840 chr3L 14652640 14652671 chr3L 14652719 14652749 13 78 1.5 2.5 2.0 4.3 109 chr3L 14652640 intron dlp + chr3L 14652694 intron dlp + chr3L 14652749 intron dlp + chr3L_13_14650001 chr3L_14650001 RAL-761 841 chr3L 14855582 14855601 chr3L 14855670 14855689 5 86 8.0 6.0 7.0 0.6 107 chr3L 14855582 intron CG17839 + chr3L 14855636 intron CG17839 + chr3L 14855689 intron CG17839 + chr3L_5_14855001 chr3L_14855001 RAL-761 842 chr3L 14893659 14893687 chr3L 14893743 14893772 7 85 1.5 3.5 2.5 2.0 113 chr3L 14893659 intergenic CG34245 - chr3L 14893716 intergenic CG34245 - chr3L 14893772 3` UTR CG34245 - chr3L_7_14890001 chr3L_14890001 RAL-761 843 chr3L 14973641 14973655 chr3L 14973721 14973735 4 78 5.0 2.0 3.5 0.9 94 chr3L 14973641 intergenic Brd + chr3L 14973688 intergenic Brd + chr3L 14973735 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-761 844 chr3L 15053419 15053447 chr3L 15053758 15053786 10 339 2.0 3.0 2.5 2.9 367 chr3L 15053419 intron Sytbeta - chr3L 15053602 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053786 intron,3` UTR Sytbeta -,CG18649 - chr3L_10_15050001 chr3L_15050001 RAL-761 845 chr3L 15085047 15085077 chr3L 15086213 15086242 1360 7 1163 2.5 1.5 2.0 2.3 1195 chr3L 15085047 intron cp309 - chr3L 15085644 intron cp309 - chr3L 15086242 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-761 846 chr3L 15541620 15541651 chr3L 15541711 15541742 5 91 2.5 2.0 2.2 1.6 122 chr3L 15541620 intron CrebA + chr3L 15541681 intron CrebA + chr3L 15541742 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-761 847 chr3L 15737381 15737402 chr3L 15737471 15737492 5 89 1.0 0.5 0.8 2.8 111 chr3L 15737381 intergenic not near genes chr3L 15737436 intergenic not near genes chr3L 15737492 intergenic not near genes chr3L_5_15735001 chr3L_15735001 RAL-761 848 chr3L 15756879 15756912 chr3L 15756962 15756995 5 81 1.5 0.0 0.8 2.8 116 chr3L 15756879 intergenic not near genes chr3L 15756937 intergenic not near genes chr3L 15756995 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-761 849 chr3L 15819391 15819415 chr3L 15819483 15819506 6 92 0.5 0.5 0.5 4.0 115 chr3L 15819391 3` UTR Dcp2 - chr3L 15819448 3` UTR Dcp2 - chr3L 15819506 3` UTR Dcp2 - chr3L_6_15815001 chr3L_15815001 RAL-761 850 chr3L 15871599 15871613 chr3L 15871683 15871697 4 84 1.0 2.0 1.5 1.6 98 chr3L 15871599 intron pHCl - chr3L 15871648 intron pHCl - chr3L 15871697 intron pHCl - chr3L_4_15870001 chr3L_15870001 RAL-761 851 chr3L 15929202 15929213 chr3L 15938349 15938360 roo 4 9146 0.5 3.0 1.8 1.4 9158 chr3L 15929202 intron Pka-C3 - chr3L 15933781 intron Pka-C3 - chr3L 15938360 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-761 852 chr3L 15946501 15946516 chr3L 15946587 15946602 9 86 4.0 0.0 2.0 3.0 101 chr3L 15946501 intron Pka-C3 - chr3L 15946552 intron Pka-C3 - chr3L 15946602 intron Pka-C3 - chr3L_9_15945001 chr3L_15945001 RAL-761 853 chr3L 16184104 16184139 chr3L 16188923 16188946 X-element 5 4814 0.0 3.5 1.8 1.8 4842 chr3L 16184104 intergenic not near genes chr3L 16186525 intergenic not near genes chr3L 16188946 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-761 854 chr3L 16212811 16212840 chr3L 16212902 16212931 8 90 3.0 1.0 2.0 2.7 120 chr3L 16212811 intergenic CG13073 - chr3L 16212871 intergenic CG13073 - chr3L 16212931 intergenic CG13073 - chr3L_8_16210001 chr3L_16210001 RAL-761 855 chr3L 16301261 16301289 chr3L 16301368 16301400 6 108 1.0 2.0 1.5 2.4 139 chr3L 16301261 intergenic CG4982 + chr3L 16301330 intergenic CG4982 + chr3L 16301400 intergenic CG4982 + chr3L_6_16300001 chr3L_16300001 RAL-761 856 chr3L 16322826 16322858 chr3L 16322916 16322947 17 90 3.0 3.0 3.0 4.2 121 chr3L 16322826 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322947 intergenic not near genes chr3L_17_16320001 chr3L_16320001 RAL-761 857 chr3L 16360888 16360912 chr3L 16360963 16360990 14 75 4.5 3.5 4.0 2.8 102 chr3L 16360888 intron CG45057 - chr3L 16360939 intron CG45057 - chr3L 16360990 intron CG45057 - chr3L_14_16360001 chr3L_16360001 RAL-761 858 chr3L 16437072 16437104 chr3L 16437151 16437190 7 85 3.0 0.0 1.5 2.8 118 chr3L 16437072 intron,intron CG33158 +,dsx-c73A - chr3L 16437131 intron,intron CG33158 +,dsx-c73A - chr3L 16437190 intron,intron CG33158 +,dsx-c73A - chr3L_7_16435001 chr3L_16435001 RAL-761 859 chr3L 16438311 16438331 chr3L 16438392 16438412 5 80 6.0 1.5 3.8 1.0 101 chr3L 16438311 intron,intron CG33158 +,dsx-c73A - chr3L 16438362 intron,intron CG33158 +,dsx-c73A - chr3L 16438412 intron,intron CG33158 +,dsx-c73A - chr3L_5_16435001 chr3L_16435001 RAL-761 860 chr3L 16443856 16443872 chr3L 16446187 16446208 Doc 5 2336 1.5 2.5 2.0 1.7 2352 chr3L 16443856 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446208 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 RAL-761 861 chr3L 16457530 16457543 chr3L 16457625 16457638 5 95 3.0 6.0 4.5 0.9 108 chr3L 16457530 intron CG33158 + chr3L 16457584 intron CG33158 + chr3L 16457638 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-761 862 chr3L 16458272 16458287 chr3L 16458385 16458400 4 113 2.0 2.5 2.2 1.2 128 chr3L 16458272 intron CG33158 + chr3L 16458336 intron CG33158 + chr3L 16458400 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-761 863 chr3L 16493985 16494013 chr3L 16494501 16494529 jockey 4 516 2.0 5.0 3.5 0.9 544 chr3L 16493985 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494257 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_4_16490001 chr3L_16490001 RAL-761 864 chr3L 16540055 16540088 chr3L 16540143 16540174 7 87 1.0 4.5 2.8 1.8 119 chr3L 16540055 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540174 intron CG43373 - chr3L_7_16540001 chr3L_16540001 RAL-761 865 chr3L 16563233 16563248 chr3L 16563314 16563329 6 80 2.5 0.0 1.2 2.7 96 chr3L 16563233 intergenic Mipp1 - chr3L 16563281 intergenic Mipp1 - chr3L 16563329 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-761 866 chr3L 16805026 16805043 chr3L 16805140 16805158 6 115 2.0 3.5 2.8 1.6 132 chr3L 16805026 intron,5` UTR CG9674 -,nudC + chr3L 16805092 intron,5` UTR CG9674 -,nudC + chr3L 16805158 intron,5` UTR CG9674 -,nudC + chr3L_6_16805001 chr3L_16805001 RAL-761 867 chr3L 16808040 16808066 chr3L 16808116 16808140 4 75 1.5 0.0 0.8 2.2 100 chr3L 16808040 intron nudC + chr3L 16808090 intron nudC + chr3L 16808140 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-761 868 chr3L 16818746 16818780 chr3L 16818822 16818856 12 76 3.5 4.0 3.8 2.5 110 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818801 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_12_16815001 chr3L_16815001 RAL-761 869 chr3L 16845021 16845043 chr3L 16845134 16845152 4 112 1.0 1.5 1.2 1.8 131 chr3L 16845021 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845086 intergenic CG9669 -,CG9715 + chr3L 16845152 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-761 870 chr3L 16972058 16972072 chr3L 16972134 16972148 5 76 4.0 1.0 2.5 1.4 90 chr3L 16972058 intron Exn + chr3L 16972103 intron Exn + chr3L 16972148 intron Exn + chr3L_5_16970001 chr3L_16970001 RAL-761 871 chr3L 17085005 17085031 chr3L 17094154 17094180 roo 8 9148 4.5 1.5 3.0 2.0 9175 chr3L 17085005 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094180 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 RAL-761 872 chr3L 17113871 17113903 chr3L 17113956 17113988 12 83 2.5 1.5 2.0 4.0 117 chr3L 17113871 intron Rbp6 - chr3L 17113930 intron Rbp6 - chr3L 17113988 intron Rbp6 - chr3L_12_17110001 chr3L_17110001 RAL-761 873 chr3L 17116613 17116643 chr3L 17116789 17116819 7 176 1.0 2.0 1.5 2.8 206 chr3L 17116613 intron Rbp6 - chr3L 17116716 intron Rbp6 - chr3L 17116819 intron Rbp6 - chr3L_7_17115001 chr3L_17115001 RAL-761 874 chr3L 17120652 17120679 chr3L 17120728 17120755 7 76 3.5 2.0 2.8 1.8 103 chr3L 17120652 intron Rbp6 - chr3L 17120704 intron Rbp6 - chr3L 17120755 intron Rbp6 - chr3L_7_17120001 chr3L_17120001 RAL-761 875 chr3L 17164372 17164399 chr3L 17164513 17164540 8 140 2.0 0.0 1.0 4.0 168 chr3L 17164372 intron Rbp6 - chr3L 17164456 intron Rbp6 - chr3L 17164540 intron Rbp6 - chr3L_8_17160001 chr3L_17160001 RAL-761 876 chr3L 17309093 17309103 chr3L 17309154 17309186 5 75 1.5 2.5 2.0 1.7 93 chr3L 17309093 intergenic not near genes chr3L 17309140 intergenic not near genes chr3L 17309186 intergenic not near genes chr3L_5_17305001 chr3L_17305001 RAL-761 877 chr3L 17367434 17367460 chr3L 17367528 17367551 5 90 2.5 2.5 2.5 1.4 117 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367492 intergenic CR45688 +,Cad74A - chr3L 17367551 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-761 878 chr3L 17510751 17510763 chr3L 17510831 17510846 7 82 1.5 3.5 2.5 2.0 95 chr3L 17510751 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510846 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-761 879 chr3L 17516982 17517010 chr3L 17524538 17524568 412 7 7554 4.5 2.0 3.2 1.7 7586 chr3L 17516982 intron CG7564 + chr3L 17520775 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-761 880 chr3L 17789845 17789871 chr3L 17789921 17789947 9 76 2.5 4.0 3.2 2.1 102 chr3L 17789845 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789947 intergenic not near genes chr3L_9_17785001 chr3L_17785001 RAL-761 881 chr3L 17948167 17948200 chr3L 17948243 17948275 5 76 1.5 2.5 2.0 1.7 108 chr3L 17948167 intergenic CR45393 - chr3L 17948221 intergenic not near genes chr3L 17948275 intergenic not near genes chr3L_5_17945001 chr3L_17945001 RAL-761 882 chr3L 17991581 17991586 chr3L 17991659 17991664 4 77 3.5 3.0 3.2 1.0 83 chr3L 17991581 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991664 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-761 883 chr3L 18047710 18047739 chr3L 18056767 18056796 roo 7 9057 1.0 0.5 0.8 3.9 9086 chr3L 18047710 intron Eip75B - chr3L 18052253 intron Eip75B - chr3L 18056796 intron Eip75B - chr3L_7_18050001 chr3L_18050001 RAL-761 884 chr3L 18119657 18119679 chr3L 18119755 18119777 7 98 0.0 4.5 2.2 2.2 120 chr3L 18119657 intron CG7341 + chr3L 18119717 intron CG7341 + chr3L 18119777 intron CG7341 + chr3L_7_18115001 chr3L_18115001 RAL-761 885 chr3L 18138249 18138258 chr3L 18138330 18138343 4 84 1.5 5.0 3.2 1.0 94 chr3L 18138249 intergenic not near genes chr3L 18138296 intergenic not near genes chr3L 18138343 intergenic not near genes chr3L_4_18135001 chr3L_18135001 RAL-761 886 chr3L 18163980 18164238 chr3L 18164182 18164404 5 188 1.0 1.0 1.0 2.5 424 chr3L 18163980 intergenic not near genes chr3L 18164192 intergenic not near genes chr3L 18164404 intergenic not near genes chr3L_5_18160001 chr3L_18160001 RAL-761 887 chr3L 18221114 18221127 chr3L 18221194 18221208 4 80 0.0 0.0 0.0 4.0 94 chr3L 18221114 intergenic not near genes chr3L 18221161 intergenic not near genes chr3L 18221208 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-761 888 chr3L 18223170 18223189 chr3L 18223253 18223256 6 79 0.0 0.5 0.2 5.0 86 chr3L 18223170 intergenic not near genes chr3L 18223213 intergenic not near genes chr3L 18223256 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-761 889 chr3L 18248952 18248981 chr3L 18249050 18249079 12 97 3.0 3.5 3.2 2.9 127 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249079 intergenic not near genes chr3L_12_18245001 chr3L_18245001 RAL-761 890 chr3L 18267469 18267471 chr3L 18267552 18267553 4 83 6.5 2.0 4.2 0.8 84 chr3L 18267469 intergenic not near genes chr3L 18267511 intergenic not near genes chr3L 18267553 intergenic not near genes chr3L_4_18265001 chr3L_18265001 RAL-761 891 chr3L 18267473 18267486 chr3L 18267551 18267569 4 81 2.5 1.5 2.0 1.3 96 chr3L 18267473 intergenic not near genes chr3L 18267521 intergenic not near genes chr3L 18267569 intergenic not near genes chr3L_4_18265001 chr3L_18265001 RAL-761 892 chr3L 18267849 18267997 chr3L 18267925 18268073 8 76 2.5 2.5 2.5 2.3 224 chr3L 18267849 intergenic not near genes chr3L 18267961 intergenic not near genes chr3L 18268073 intergenic not near genes chr3L_8_18265001 chr3L_18265001 RAL-761 893 chr3L 18279786 18279815 chr3L 18279861 18279891 8 75 2.0 1.0 1.5 3.2 105 chr3L 18279786 intergenic not near genes chr3L 18279838 intergenic not near genes chr3L 18279891 intergenic not near genes chr3L_8_18275001 chr3L_18275001 RAL-761 894 chr3L 18375973 18376002 chr3L 18376058 18376087 7 84 0.5 2.0 1.2 3.2 114 chr3L 18375973 intergenic not near genes chr3L 18376030 intergenic not near genes chr3L 18376087 intergenic not near genes chr3L_7_18375001 chr3L_18375001 RAL-761 895 chr3L 18408739 18408761 chr3L 18408825 18408847 6 86 1.0 2.0 1.5 2.4 108 chr3L 18408739 intergenic not near genes chr3L 18408793 intergenic not near genes chr3L 18408847 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-761 896 chr3L 9013689 9013692 chr3L 18417066 18417066 7 9403375 20.0 17.0 18.5 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-761 897 chr3L 18514909 18514936 chr3L 18520099 18520126 BS 6 5190 2.0 3.5 2.8 1.6 5217 chr3L 18514909 intergenic not near genes chr3L 18517518 intergenic not near genes chr3L 18520126 intergenic not near genes chr3L_6_18515001 chr3L_18515001 RAL-761 898 chr3L 18638575 18638600 chr3L 18638669 18638694 5 93 2.5 1.5 2.0 1.7 119 chr3L 18638575 intron MYPT-75D + chr3L 18638634 intron MYPT-75D + chr3L 18638694 intron MYPT-75D + chr3L_5_18635001 chr3L_18635001 RAL-761 899 chr3L 18742434 18742461 chr3L 18742544 18742570 7 110 0.0 2.5 1.2 3.2 136 chr3L 18742434 intergenic not near genes chr3L 18742502 intergenic not near genes chr3L 18742570 intergenic not near genes chr3L_7_18740001 chr3L_18740001 RAL-761 900 chr3L 18772410 18772435 chr3L 18781091 18781116 roo 14 8681 2.0 2.0 2.0 4.7 8706 chr3L 18772410 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781116 intron ftz-f1 - chr3L_14_18775001 chr3L_18775001 RAL-761 901 chr3L 18833796 18833803 chr3L 18834953 18834960 1360 4 1160 1.5 4.5 3.0 1.0 1164 chr3L 18833796 intron Indy - chr3L 18834378 intron Indy - chr3L 18834960 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-761 902 chr3L 18866853 18866882 chr3L 18867693 18867711 9 835 13.0 16.0 14.5 0.6 858 chr3L 18866853 exon CG14074 + chr3L 18867282 exon CG14074 + chr3L 18867711 intergenic Dysb +,CG14074 + chr3L_9_18865001 chr3L_18865001 RAL-761 903 chr3L 18929957 18929988 chr3L 18930041 18930072 10 82 3.0 2.5 2.8 2.6 115 chr3L 18929957 intron CG32204 - chr3L 18930014 intron CG32204 - chr3L 18930072 exon CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-761 904 chr3L 18972393 18972404 chr3L 18972469 18972480 5 75 7.0 6.0 6.5 0.7 87 chr3L 18972393 intergenic not near genes chr3L 18972436 intergenic not near genes chr3L 18972480 intergenic not near genes chr3L_5_18970001 chr3L_18970001 RAL-761 905 chr3L 19008838 19008870 chr3L 19009174 19009208 jockey 4 336 0.0 4.5 2.2 1.2 370 chr3L 19008838 intron nkd - chr3L 19009023 intron nkd - chr3L 19009208 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-761 906 chr3L 19035900 19035921 chr3L 19035976 19036005 5 80 1.0 2.0 1.5 2.0 105 chr3L 19035900 intron nkd - chr3L 19035952 intron nkd - chr3L 19036005 intron nkd - chr3L_5_19035001 chr3L_19035001 RAL-761 907 chr3L 19082035 19082070 chr3L 19082137 19082171 9 102 3.5 3.5 3.5 2.0 136 chr3L 19082035 intron Mkp3 - chr3L 19082103 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_9_19080001 chr3L_19080001 RAL-761 908 chr3L 19100473 19100498 chr3L 19100645 19100670 4 172 1.5 1.0 1.2 1.8 197 chr3L 19100473 intergenic Gem2 - chr3L 19100572 intergenic Gem2 - chr3L 19100670 intergenic Gem2 - chr3L_4_19100001 chr3L_19100001 RAL-761 909 chr3L 19115639 19115670 chr3L 19115818 19115840 BS 9 178 6.0 2.0 4.0 1.8 201 chr3L 19115639 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115840 intron CG14082 - chr3L_9_19115001 chr3L_19115001 RAL-761 910 chr3L 19117048 19117075 chr3L 19124495 19124521 mdg1 7 7447 2.5 5.5 4.0 1.4 7473 chr3L 19117048 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-761 911 chr3L 19178650 19178674 chr3L 19178731 19178755 11 80 3.5 0.0 1.8 3.9 105 chr3L 19178650 intron fz2 - chr3L 19178702 intron fz2 - chr3L 19178755 intron fz2 - chr3L_11_19175001 chr3L_19175001 RAL-761 912 chr3L 19182398 19182416 chr3L 19182479 19182496 5 80 0.5 3.0 1.8 1.8 98 chr3L 19182398 intron fz2 - chr3L 19182447 intron fz2 - chr3L 19182496 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-761 913 chr3L 19192620 19192644 chr3L 19192701 19192724 8 81 3.0 5.0 4.0 1.6 104 chr3L 19192620 intron fz2 - chr3L 19192672 intron fz2 - chr3L 19192724 intron fz2 - chr3L_8_19190001 chr3L_19190001 RAL-761 914 chr3L 19206820 19206834 chr3L 19206887 19206912 5 76 1.0 0.5 0.8 2.8 92 chr3L 19206820 intron fz2 - chr3L 19206866 intron fz2 - chr3L 19206912 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-761 915 chr3L 19208062 19208082 chr3L 19209435 19209450 Doc 9 1373 4.0 3.0 3.5 2.0 1388 chr3L 19208062 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209450 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-761 916 chr3L 19274189 19274210 chr3L 19274268 19274289 7 78 0.5 3.0 1.8 2.5 100 chr3L 19274189 intergenic CG14085 + chr3L 19274239 intergenic CG14085 + chr3L 19274289 intergenic CG14085 + chr3L_7_19270001 chr3L_19270001 RAL-761 917 chr3L 19295146 19295167 chr3L 19295465 19295486 4 319 1.5 0.5 1.0 2.0 340 chr3L 19295146 intron fal + chr3L 19295316 intron fal + chr3L 19295486 intron fal + chr3L_4_19295001 chr3L_19295001 RAL-761 918 chr3L 19340377 19340397 chr3L 19340599 19340619 8 222 2.0 1.5 1.8 2.9 242 chr3L 19340377 3` UTR CG32206 - chr3L 19340498 3` UTR CG32206 - chr3L 19340619 3` UTR CG32206 - chr3L_8_19340001 chr3L_19340001 RAL-761 919 chr3L 19365920 19365930 chr3L 19366017 19366027 4 97 0.0 6.5 3.2 1.0 107 chr3L 19365920 intron CG32206 - chr3L 19365974 intron CG32206 - chr3L 19366027 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-761 920 chr3L 19451104 19451124 chr3L 19451588 19451609 6 485 3.0 2.5 2.8 1.6 505 chr3L 19451104 intergenic not near genes chr3L 19451356 intergenic not near genes chr3L 19451609 intergenic not near genes chr3L_6_19450001 chr3L_19450001 RAL-761 921 chr3L 19527927 19527953 chr3L 19528005 19528032 6 78 2.5 4.0 3.2 1.4 105 chr3L 19527927 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528032 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-761 922 chr3L 19848510 19848535 chr3L 19857700 19857725 roo 5 9190 2.5 4.5 3.5 1.1 9215 chr3L 19848510 intron Papss + chr3L 19853118 intron Papss + chr3L 19857725 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-761 923 chr3L 19861821 19861853 chr3L 19863609 19863641 S-element 9 1784 2.5 2.5 2.5 2.6 1820 chr3L 19861821 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-761 924 chr3L 19899891 19899914 chr3L 19899987 19900011 4 97 0.5 0.5 0.5 2.7 120 chr3L 19899891 intron,intron Mi-2 -,Su(Tpl) - chr3L 19899951 intron,intron Mi-2 -,Su(Tpl) - chr3L 19900011 intron,intron Mi-2 -,Su(Tpl) - chr3L_4_19895001 chr3L_19895001 RAL-761 925 chr3L 19905177 19905208 chr3L 19905506 19905536 4 329 1.5 2.0 1.8 1.4 359 chr3L 19905177 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905356 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905536 intron,intron Mi-2 -,Su(Tpl) - chr3L_4_19905001 chr3L_19905001 RAL-761 926 chr3L 19962946 19962980 chr3L 19963024 19963058 5 78 0.5 3.0 1.8 1.8 112 chr3L 19962946 intron Ac76E + chr3L 19963002 intron Ac76E + chr3L 19963058 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-761 927 chr3L 20101894 20101909 chr3L 20101969 20101986 8 76 4.0 8.0 6.0 1.1 92 chr3L 20101894 intron CG14186 - chr3L 20101940 intron CG14186 - chr3L 20101986 intron CG14186 - chr3L_8_20100001 chr3L_20100001 RAL-761 928 chr3L 20143084 20143109 chr3L 20143158 20143168 11 77 3.5 2.0 2.8 2.9 84 chr3L 20143084 intergenic not near genes chr3L 20143126 intergenic not near genes chr3L 20143168 intergenic not near genes chr3L_11_20140001 chr3L_20140001 RAL-761 929 chr3L 20177253 20177273 chr3L 20177333 20177362 7 84 6.5 5.0 5.8 1.0 109 chr3L 20177253 intron CG42674 - chr3L 20177308 intron CG42674 - chr3L 20177362 intron CG42674 - chr3L_7_20175001 chr3L_20175001 RAL-761 930 chr3L 20257336 20257362 chr3L 20258456 20258479 pogo 6 1119 1.5 1.0 1.2 2.7 1143 chr3L 20257336 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258479 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-761 931 chr3L 20290317 20290348 chr3L 20290402 20290433 5 85 1.5 3.0 2.2 1.6 116 chr3L 20290317 intron gogo - chr3L 20290375 intron gogo - chr3L 20290433 intron gogo - chr3L_5_20290001 chr3L_20290001 RAL-761 932 chr3L 20423009 20423036 chr3L 20423224 20423250 12 210 4.5 3.5 4.0 2.4 241 chr3L 20423009 exon zye + chr3L 20423130 exon zye + chr3L 20423250 exon zye + chr3L_12_20420001 chr3L_20420001 RAL-761 933 chr3L 20476753 20476784 chr3L 20484352 20484383 springer 8 7598 2.0 2.5 2.2 2.5 7630 chr3L 20476753 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_8_20480001 chr3L_20480001 RAL-761 934 chr3L 20490751 20490775 chr3L 20490896 20490899 5 141 1.0 2.5 1.8 1.8 148 chr3L 20490751 intron ZnT77C - chr3L 20490825 intron ZnT77C - chr3L 20490899 intron ZnT77C - chr3L_5_20490001 chr3L_20490001 RAL-761 935 chr3L 20516627 20516663 chr3L 20516721 20516730 10 89 0.5 1.5 1.0 5.0 103 chr3L 20516627 intron CG5059 - chr3L 20516678 intron CG5059 - chr3L 20516730 intron CG5059 - chr3L_10_20515001 chr3L_20515001 RAL-761 936 chr3L 20739493 20739506 chr3L 20739608 20739621 5 115 4.0 4.0 4.0 1.0 128 chr3L 20739493 intron CG13252 + chr3L 20739557 intron CG13252 + chr3L 20739621 intron CG13252 + chr3L_5_20735001 chr3L_20735001 RAL-761 937 chr3L 20849271 20849297 chr3L 20849350 20849376 6 78 4.0 0.5 2.2 1.9 105 chr3L 20849271 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_6_20845001 chr3L_20845001 RAL-761 938 chr3L 20890510 20890523 chr3L 20890565 20890593 5 65 2.0 5.0 3.5 1.1 83 chr3L 20890510 intergenic not near genes chr3L 20890552 intergenic not near genes chr3L 20890593 intergenic not near genes chr3L_5_20890001 chr3L_20890001 RAL-761 939 chr3L 20890915 20890927 chr3L 20891020 20891030 6 104 4.5 7.5 6.0 0.9 115 chr3L 20890915 intergenic not near genes chr3L 20890972 intergenic not near genes chr3L 20891030 intergenic not near genes chr3L_6_20890001 chr3L_20890001 RAL-761 940 chr3L 20890928 20890945 chr3L 20891017 20891040 6 99 1.5 6.0 3.8 1.2 112 chr3L 20890928 intergenic not near genes chr3L 20890984 intergenic not near genes chr3L 20891040 intergenic not near genes chr3L_6_20890001 chr3L_20890001 RAL-761 941 chr3L 20913754 20913782 chr3L 20913831 20913864 10 77 1.5 3.5 2.5 2.9 110 chr3L 20913754 intergenic CR43930 - chr3L 20913809 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_10_20910001 chr3L_20910001 RAL-761 942 chr3L 20917091 20917122 chr3L 20917168 20917191 13 75 3.5 2.5 3.0 3.2 100 chr3L 20917091 intergenic not near genes chr3L 20917141 intergenic not near genes chr3L 20917191 intergenic not near genes chr3L_13_20915001 chr3L_20915001 RAL-761 943 chr3L 20931807 20931836 chr3L 20931890 20931919 7 83 0.5 1.5 1.0 3.5 112 chr3L 20931807 intron fng - chr3L 20931863 intron fng - chr3L 20931919 intron fng - chr3L_7_20930001 chr3L_20930001 RAL-761 944 chr3L 20948666 20948700 chr3L 20948757 20948791 12 89 2.0 2.0 2.0 4.0 125 chr3L 20948666 intron fng - chr3L 20948728 intron fng - chr3L 20948791 intron fng - chr3L_12_20945001 chr3L_20945001 RAL-761 945 chr3L 20979153 20979173 chr3L 20979535 20979555 7 380 2.0 1.5 1.8 2.5 402 chr3L 20979153 intergenic not near genes chr3L 20979354 intergenic not near genes chr3L 20979555 intergenic not near genes chr3L_7_20975001 chr3L_20975001 RAL-761 946 chr3L 20986760 20986790 chr3L 20986837 20986866 10 76 2.5 2.5 2.5 2.9 106 chr3L 20986760 intergenic not near genes chr3L 20986813 intergenic not near genes chr3L 20986866 intergenic not near genes chr3L_10_20985001 chr3L_20985001 RAL-761 947 chr3L 21014915 21014946 chr3L 21023396 21023417 Tirant 6 8468 3.5 1.5 2.5 1.7 8502 chr3L 21014915 intron skd - chr3L 21019166 intron skd - chr3L 21023417 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-761 948 chr3L 21110185 21110207 chr3L 21110439 21110461 4 254 5.0 5.5 5.2 0.6 276 chr3L 21110185 intron ko - chr3L 21110323 intron ko - chr3L 21110461 intron ko - chr3L_4_21110001 chr3L_21110001 RAL-761 949 chr3L 21151863 21151886 chr3L 21156947 21156970 flea 6 5084 2.5 1.0 1.8 2.1 5107 chr3L 21151863 intron Ac78C - chr3L 21154416 intron Ac78C - chr3L 21156970 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-761 950 chr3L 21158595 21158626 chr3L 21158670 21158689 17 73 2.0 3.0 2.5 4.9 94 chr3L 21158595 intron Ac78C - chr3L 21158642 intron Ac78C - chr3L 21158689 intron Ac78C - chr3L_17_21155001 chr3L_21155001 RAL-761 951 chr3L 21172838 21172869 chr3L 21172937 21172972 7 102 1.0 2.0 1.5 2.8 134 chr3L 21172838 intergenic chb +,asparagine-synthetase + chr3L 21172905 5` UTR chb + chr3L 21172972 5` UTR chb + chr3L_7_21170001 chr3L_21170001 RAL-761 952 chr3L 21256531 21256563 chr3L 21256625 21256649 7 91 1.0 5.0 3.0 1.8 118 chr3L 21256531 intron Eip78C + chr3L 21256590 intron Eip78C + chr3L 21256649 intron Eip78C + chr3L_7_21255001 chr3L_21255001 RAL-761 953 chr3L 21303711 21303738 chr3L 21303796 21303825 6 86 1.5 2.5 2.0 2.0 114 chr3L 21303711 intron CG11309 - chr3L 21303768 intron CG11309 - chr3L 21303825 intron CG11309 - chr3L_6_21300001 chr3L_21300001 RAL-761 954 chr3L 21361734 21361752 chr3L 21362687 21362706 G2 5 954 3.5 5.0 4.2 1.0 972 chr3L 21361734 intergenic not near genes chr3L 21362220 intergenic not near genes chr3L 21362706 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-761 955 chr3L 21406994 21407021 chr3L 21407073 21407100 8 79 4.5 2.5 3.5 1.8 106 chr3L 21406994 intron rgn + chr3L 21407047 intron rgn + chr3L 21407100 intron rgn + chr3L_8_21405001 chr3L_21405001 RAL-761 956 chr3L 21498856 21498864 chr3L 21500472 21500498 1360 4 1630 2.5 5.5 4.0 0.8 1642 chr3L 21498856 intron Glg1 - chr3L 21499677 intron Glg1 - chr3L 21500498 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-761 957 chr3L 21509654 21509683 chr3L 21509731 21509757 11 75 0.5 1.0 0.8 6.1 103 chr3L 21509654 intron M6 + chr3L 21509706 intron M6 + chr3L 21509757 intron M6 + chr3L_11_21505001 chr3L_21505001 RAL-761 958 chr3L 21649775 21649802 chr3L 21649999 21650026 11 224 2.0 2.5 2.2 3.4 251 chr3L 21649775 intron CG43980 + chr3L 21649900 intron CG43980 + chr3L 21650026 intron CG43980 + chr3L_11_21645001 chr3L_21645001 RAL-761 959 chr3L 21671068 21671084 chr3L 21671216 21671228 4 147 1.0 2.5 1.8 1.4 160 chr3L 21671068 intergenic not near genes chr3L 21671148 intergenic not near genes chr3L 21671228 intergenic not near genes chr3L_4_21670001 chr3L_21670001 RAL-761 960 chr3L 21749316 21749344 chr3L 21754476 21754480 Doc 6 5152 3.0 4.5 3.8 1.2 5164 chr3L 21749316 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754480 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-761 961 chr3L 21776672 21776700 chr3L 21776759 21776787 12 86 0.5 3.0 1.8 4.3 115 chr3L 21776672 intron,intron CG42689 +,CG42552 + chr3L 21776730 intron,intron CG42689 +,CG42552 + chr3L 21776787 intron,intron CG42689 +,CG42552 + chr3L_12_21775001 chr3L_21775001 RAL-761 962 chr3L 21836731 21836761 chr3L 21836817 21836835 4 83 0.5 2.0 1.2 1.8 104 chr3L 21836731 3` UTR P5CDh1 - chr3L 21836783 3` UTR P5CDh1 - chr3L 21836835 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-761 963 chr3L 21849498 21849525 chr3L 21849580 21849607 9 82 3.5 4.0 3.8 1.9 109 chr3L 21849498 intron mub + chr3L 21849552 intron mub + chr3L 21849607 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-761 964 chr3L 21852262 21852279 chr3L 21852354 21852372 7 92 4.0 5.0 4.5 1.3 110 chr3L 21852262 intron mub + chr3L 21852317 intron mub + chr3L 21852372 intron mub + chr3L_7_21850001 chr3L_21850001 RAL-761 965 chr3L 21901035 21901041 chr3L 21901120 21901134 6 91 2.5 5.0 3.8 1.2 99 chr3L 21901035 intron mub + chr3L 21901084 intron mub + chr3L 21901134 intron mub + chr3L_6_21900001 chr3L_21900001 RAL-761 966 chr3L 21952454 21952478 chr3L 21953195 21953221 transib1 4 742 3.0 2.5 2.8 1.1 767 chr3L 21952454 intergenic not near genes chr3L 21952838 intergenic not near genes chr3L 21953221 intergenic not near genes chr3L_4_21950001 chr3L_21950001 RAL-761 967 chr3L 22016372 22016385 chr3L 22016484 22016501 5 115 6.0 3.0 4.5 0.9 129 chr3L 22016372 intergenic not near genes chr3L 22016436 intergenic not near genes chr3L 22016501 intergenic not near genes chr3L_5_22015001 chr3L_22015001 RAL-761 968 chr3L 22033688 22033710 chr3L 22033766 22033788 7 78 4.0 1.5 2.8 1.8 100 chr3L 22033688 intergenic not near genes chr3L 22033738 intergenic not near genes chr3L 22033788 intergenic not near genes chr3L_7_22030001 chr3L_22030001 RAL-761 969 chr3L 22046181 22046216 chr3L 22046284 22046316 13 101 0.5 1.0 0.8 7.2 135 chr3L 22046181 intron Oct-TyrR + chr3L 22046248 intron Oct-TyrR + chr3L 22046316 intron Oct-TyrR + chr3L_13_22045001 chr3L_22045001 RAL-761 970 chr3L 22099677 22099709 chr3L 22105863 22105895 3S18 7 6185 2.5 1.5 2.0 2.3 6218 chr3L 22099677 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-761 971 chr3L 22124818 22124834 chr3L 22124899 22124917 4 82 4.0 1.5 2.8 1.1 99 chr3L 22124818 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124917 intergenic not near genes chr3L_4_22120001 chr3L_22120001 RAL-761 972 chr3L 22137533 22137547 chr3L 22137610 22137622 4 76 0.5 2.0 1.2 1.8 89 chr3L 22137533 intron olf413 + chr3L 22137578 intron olf413 + chr3L 22137622 intron olf413 + chr3L_4_22135001 chr3L_22135001 RAL-761 973 chr3L 22166450 22166474 chr3L 22166528 22166550 7 77 1.0 2.0 1.5 2.8 100 chr3L 22166450 intron olf413 + chr3L 22166500 intron olf413 + chr3L 22166550 intron olf413 + chr3L_7_22165001 chr3L_22165001 RAL-761 974 chr3L 22169454 22169489 chr3L 22169547 22169573 5 90 3.0 5.5 4.2 1.0 119 chr3L 22169454 intron olf413 + chr3L 22169514 intron olf413 + chr3L 22169573 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-761 975 chr3L 22435585 22435607 chr3L 22435658 22435681 7 72 4.0 3.0 3.5 1.6 96 chr3L 22435585 intergenic not near genes chr3L 22435633 intergenic not near genes chr3L 22435681 intergenic not near genes chr3L_7_22435001 chr3L_22435001 RAL-761 976 chr3L 22522700 22522727 chr3L 22522776 22522804 6 74 1.5 1.5 1.5 2.4 104 chr3L 22522700 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522804 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-761 977 chr3L 22555785 22555803 chr3L 22563238 22563240 blood 6 7445 2.0 1.0 1.5 2.4 7455 chr3L 22555785 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563240 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-761 978 chr3L 22577629 22577648 chr3L 22582412 22582435 Doc 4 4786 0.5 5.5 3.0 1.0 4806 chr3L 22577629 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-761 979 chr3L 22617201 22617211 chr3L 22624652 22624662 blood 5 7451 5.0 1.0 3.0 1.2 7461 chr3L 22617201 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624662 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-761 980 chr3L 22626871 22626903 chr3L 22626961 22626985 14 89 2.0 4.0 3.0 3.5 114 chr3L 22626871 intron CG14459 - chr3L 22626928 intron CG14459 - chr3L 22626985 intron CG14459 - chr3L_14_22625001 chr3L_22625001 RAL-761 981 chr3L 22701622 22701630 chr3L 22701687 22701703 4 71 9.0 3.0 6.0 0.6 81 chr3L 22701622 intergenic not near genes chr3L 22701662 intergenic not near genes chr3L 22701703 intergenic not near genes chr3L_4_22700001 chr3L_22700001 RAL-761 982 chr3L 22820555 22820575 chr3L 22820799 22820811 6 243 2.0 2.0 2.0 2.0 256 chr3L 22820555 intron jim - chr3L 22820683 intron jim - chr3L 22820811 intron jim - chr3L_6_22820001 chr3L_22820001 RAL-761 983 chr3L 22865984 22866009 chr3L 22867117 22867142 Doc 8 1133 7.5 3.5 5.5 1.2 1158 chr3L 22865984 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867142 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-761 984 chr3L 22925719 22925747 chr3L 22925812 22925841 9 93 1.5 1.0 1.2 4.1 122 chr3L 22925719 intergenic not near genes chr3L 22925780 intergenic not near genes chr3L 22925841 intergenic not near genes chr3L_9_22925001 chr3L_22925001 RAL-761 985 chr3L 22989874 22989881 chr3L 22996834 22996853 297 5 6967 3.5 3.5 3.5 1.1 6979 chr3L 22989874 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996853 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-761 986 chr3L 23182282 23182291 chr3L 23182373 23182380 4 101 5.0 4.0 4.5 0.7 98 chr3L 23182282 intron CG34031 + chr3L 23182331 intron CG34031 + chr3L 23182380 intron CG34031 + chr3L_4_23180001 chr3L_23180001 RAL-761 987 chr3L 23290485 23290518 chr3L 23295318 23295322 X-element 8 4827 2.5 6.0 4.2 1.5 4837 chr3L 23290485 intergenic not near genes chr3L 23292904 intergenic not near genes chr3L 23295322 intergenic not near genes chr3L_8_23290001 chr3L_23290001 RAL-761 988 chr3L 23750799 23750833 chr3L 23750877 23750888 7 74 4.5 2.0 3.2 1.7 89 chr3L 23750799 intergenic not near genes chr3L 23750844 intergenic not near genes chr3L 23750888 intergenic not near genes chr3L_7_23750001 chr3L_23750001 RAL-761 989 chr3L 23750936 23750960 chr3L 23751137 23751164 5 202 24.0 10.0 17.0 0.3 228 chr3L 23750936 intergenic not near genes chr3L 23751050 intergenic not near genes chr3L 23751164 intergenic not near genes chr3L_5_23750001 chr3L_23750001 RAL-761 990 chr3L 23854310 23854317 chr3L 23854406 23854415 4 97 2.0 0.0 1.0 2.0 105 chr3L 23854310 intron CG40470 - chr3L 23854362 intron CG40470 - chr3L 23854415 intron CG40470 - chr3L_4_23850001 chr3L_23850001 RAL-761 991 chr3L 27347485 27347500 chr3L 27347570 27347586 6 86 1.5 3.5 2.5 1.7 101 chr3L 27347485 intron Dbp80 + chr3L 27347536 intron Dbp80 + chr3L 27347586 intron Dbp80 + chr3L_6_27345001 chr3L_27345001 RAL-761 992 chr3R 3396196 3396218 chr3R 3396404 3396429 7 209 2.5 6.0 4.2 1.3 233 chr3R 3396196 intergenic not near genes chr3R 3396312 intergenic not near genes chr3R 3396429 intergenic not near genes chr3R_7_3395001 chr3R_3395001 RAL-761 993 chr3R 4063813 4063829 chr3R 4069089 4069109 4 5279 4.0 7.5 5.8 0.6 5296 chr3R 4063813 intergenic not near genes chr3R 4066461 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-761 994 chr3R 4206072 4206099 chr3R 4211644 4211674 mdg3 6 5574 2.5 0.5 1.5 2.4 5602 chr3R 4206072 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211674 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-761 995 chr3R 4463403 4463408 chr3R 4463479 4463482 4 75 3.5 1.5 2.5 1.1 79 chr3R 4463403 intergenic not near genes chr3R 4463442 intergenic not near genes chr3R 4463482 intergenic not near genes chr3R_4_4460001 chr3R_4460001 RAL-761 996 chr3R 4753239 4753271 chr3R 4757542 4757574 F-element 11 4301 5.0 5.0 5.0 1.8 4335 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757574 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-761 997 chr3R 4764460 4764490 chr3R 4764693 4764723 17 232 3.5 3.5 3.5 3.8 263 chr3R 4764460 intron,intron atms +,CG44098 - chr3R 4764592 intron,intron atms +,CG44098 - chr3R 4764723 intron,intron atms +,CG44098 - chr3R_17_4760001 chr3R_4760001 RAL-761 998 chr3R 4769168 4769190 chr3R 4769246 4769268 10 78 3.0 3.0 3.0 2.5 100 chr3R 4769168 intron,intron atms +,CG44098 - chr3R 4769218 intron,intron atms +,CG44098 - chr3R 4769268 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-761 999 chr3R 4828279 4828303 chr3R 4828635 4828659 8 356 1.0 0.0 0.5 5.3 380 chr3R 4828279 intergenic not near genes chr3R 4828469 intergenic not near genes chr3R 4828659 intergenic not near genes chr3R_8_4825001 chr3R_4825001 RAL-761 1000 chr3R 4887479 4887511 chr3R 4894855 4894885 rover 8 7375 3.5 5.0 4.2 1.5 7406 chr3R 4887479 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894885 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-761 1001 chr3R 5045845 5045868 chr3R 5052947 5052970 HMS-Beagle 4 7102 6.5 2.5 4.5 0.7 7125 chr3R 5045845 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052970 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-761 1002 chr3R 5067991 5068014 chr3R 5073508 5073531 mdg3 5 5517 1.0 4.0 2.5 1.4 5540 chr3R 5067991 intergenic not near genes chr3R 5070761 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-761 1003 chr3R 5278105 5278123 chr3R 5278174 5278204 9 79 4.0 3.0 3.5 2.0 99 chr3R 5278105 intron mtd - chr3R 5278154 intron mtd - chr3R 5278204 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-761 1004 chr3R 5283980 5284009 chr3R 5284146 5284175 10 164 2.0 3.5 2.8 2.6 195 chr3R 5283980 intron mtd - chr3R 5284078 intron mtd - chr3R 5284175 intron mtd - chr3R_10_5280001 chr3R_5280001 RAL-761 1005 chr3R 5292416 5292433 chr3R 5292492 5292500 5 74 2.0 8.0 5.0 0.8 84 chr3R 5292416 intron mtd - chr3R 5292458 intron mtd - chr3R 5292500 intron mtd - chr3R_5_5290001 chr3R_5290001 RAL-761 1006 chr3R 5338399 5338430 chr3R 5343576 5343607 Rt1c 7 5176 2.5 7.0 4.8 1.2 5208 chr3R 5338399 intron mtd - chr3R 5341003 intron mtd - chr3R 5343607 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-761 1007 chr3R 5506844 5506867 chr3R 5506976 5506999 5 132 2.5 4.0 3.2 1.2 155 chr3R 5506844 intergenic not near genes chr3R 5506922 intergenic not near genes chr3R 5506999 intergenic not near genes chr3R_5_5505001 chr3R_5505001 RAL-761 1008 chr3R 5627149 5627173 chr3R 5627558 5627572 10 406 5.0 4.0 4.5 1.8 423 chr3R 5627149 intergenic not near genes chr3R 5627360 intergenic CG31551 + chr3R 5627572 intergenic CG31551 + chr3R_10_5625001 chr3R_5625001 RAL-761 1009 chr3R 5726100 5726125 chr3R 5726262 5726287 6 162 2.0 0.5 1.2 2.7 187 chr3R 5726100 intergenic not near genes chr3R 5726194 intergenic not near genes chr3R 5726287 intergenic not near genes chr3R_6_5725001 chr3R_5725001 RAL-761 1010 chr3R 5746019 5746044 chr3R 5746260 5746285 pogo 9 239 5.0 4.5 4.8 1.6 266 chr3R 5746019 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-761 1011 chr3R 5747018 5747037 chr3R 5753209 5753228 diver 5 6191 0.0 0.0 0.0 5.0 6210 chr3R 5747018 intergenic Madm + chr3R 5750123 intergenic not near genes chr3R 5753228 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-761 1012 chr3R 5763041 5763064 chr3R 5763128 5763152 7 90 3.0 2.5 2.8 1.8 111 chr3R 5763041 intron CG2082 - chr3R 5763096 intron CG2082 - chr3R 5763152 intron CG2082 - chr3R_7_5760001 chr3R_5760001 RAL-761 1013 chr3R 5772377 5772406 chr3R 5772535 5772564 11 158 0.5 0.5 0.5 7.3 187 chr3R 5772377 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772564 intron CG2082 - chr3R_11_5770001 chr3R_5770001 RAL-761 1014 chr3R 5822377 5822413 chr3R 5823544 5823577 1360 13 1167 5.0 5.0 5.0 2.2 1200 chr3R 5822377 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823577 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-761 1015 chr3R 5896980 5896992 chr3R 5897338 5897351 4 359 5.5 3.5 4.5 0.7 371 chr3R 5896980 intron CG34113 - chr3R 5897166 intron CG34113 - chr3R 5897351 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-761 1016 chr3R 5913773 5913793 chr3R 5913851 5913871 5 78 1.5 0.5 1.0 2.5 98 chr3R 5913773 intron CG34113 - chr3R 5913822 intron CG34113 - chr3R 5913871 intron CG34113 - chr3R_5_5910001 chr3R_5910001 RAL-761 1017 chr3R 5927565 5927591 chr3R 5927805 5927828 pogo 6 239 5.5 4.5 5.0 1.0 263 chr3R 5927565 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-761 1018 chr3R 5935361 5935393 chr3R 5935437 5935469 5 76 0.0 1.5 0.8 2.8 108 chr3R 5935361 intron CG34113 - chr3R 5935415 intron CG34113 - chr3R 5935469 intron CG34113 - chr3R_5_5935001 chr3R_5935001 RAL-761 1019 chr3R 5989337 5989368 chr3R 5989417 5989446 10 78 0.0 1.5 0.8 5.6 109 chr3R 5989337 5` UTR CR44927 + chr3R 5989392 5` UTR CR44927 + chr3R 5989446 5` UTR CR44927 + chr3R_10_5985001 chr3R_5985001 RAL-761 1020 chr3R 6003315 6003348 chr3R 6003401 6003434 8 84 2.0 1.0 1.5 3.2 119 chr3R 6003315 intron Rm62 - chr3R 6003374 intron Rm62 - chr3R 6003434 intron Rm62 - chr3R_8_6000001 chr3R_6000001 RAL-761 1021 chr3R 6015967 6015992 chr3R 6024448 6024472 Tirant 6 8478 1.0 4.0 2.5 1.7 8505 chr3R 6015967 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-761 1022 chr3R 6048444 6048474 chr3R 6048527 6048557 12 81 5.5 4.5 5.0 2.0 113 chr3R 6048444 intergenic not near genes chr3R 6048500 intergenic not near genes chr3R 6048557 intergenic not near genes chr3R_12_6045001 chr3R_6045001 RAL-761 1023 chr3R 6158514 6158542 chr3R 6167096 6167123 Tirant 5 8582 5.5 2.5 4.0 1.0 8609 chr3R 6158514 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-761 1024 chr3R 6175180 6175204 chr3R 6182452 6182470 HMS-Beagle2 8 7270 2.0 2.0 2.0 2.7 7290 chr3R 6175180 intergenic Osi1 + chr3R 6178825 intron CR45194 + chr3R 6182470 intergenic CR45194 + chr3R_8_6175001 chr3R_6175001 RAL-761 1025 chr3R 6226620 6226647 chr3R 6226708 6226727 9 86 4.5 1.0 2.8 2.4 107 chr3R 6226620 intergenic not near genes chr3R 6226674 intergenic not near genes chr3R 6226727 intergenic not near genes chr3R_9_6225001 chr3R_6225001 RAL-761 1026 chr3R 6325705 6325730 chr3R 6325944 6325969 6 239 3.5 6.0 4.8 1.0 264 chr3R 6325705 intron Osi17 + chr3R 6325837 intron Osi17 + chr3R 6325969 intron Osi17 + chr3R_6_6325001 chr3R_6325001 RAL-761 1027 chr3R 6457588 6457615 chr3R 6460297 6460324 10 2712 25.5 24.0 24.8 0.4 2736 chr3R 6457588 exon Zif + chr3R 6458956 intergenic Zif + chr3R 6460324 intergenic not near genes chr3R_10_6455001 chr3R_6455001 RAL-761 1028 chr3R 6510024 6510054 chr3R 6515105 6515135 jockey 7 5080 1.0 2.0 1.5 2.8 5111 chr3R 6510024 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_7_6510001 chr3R_6510001 RAL-761 1029 chr3R 6553017 6553052 chr3R 6553092 6553129 12 74 1.0 4.0 2.5 3.4 112 chr3R 6553017 intron dpr11 - chr3R 6553073 intron dpr11 - chr3R 6553129 intron dpr11 - chr3R_12_6550001 chr3R_6550001 RAL-761 1030 chr3R 6560753 6560788 chr3R 6560885 6560916 11 130 3.5 1.0 2.2 3.4 163 chr3R 6560753 intron dpr11 - chr3R 6560834 intron dpr11 - chr3R 6560916 intron dpr11 - chr3R_11_6560001 chr3R_6560001 RAL-761 1031 chr3R 6616865 6616886 chr3R 6616942 6616963 13 77 4.0 1.5 2.8 3.4 98 chr3R 6616865 intergenic not near genes chr3R 6616914 intergenic not near genes chr3R 6616963 intergenic not near genes chr3R_13_6615001 chr3R_6615001 RAL-761 1032 chr3R 6639910 6639925 chr3R 6639987 6640002 4 76 4.0 0.5 2.2 1.2 92 chr3R 6639910 intergenic not near genes chr3R 6639956 intergenic not near genes chr3R 6640002 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-761 1033 chr3R 6737498 6737531 chr3R 6739284 6739312 Doc 12 1785 0.0 5.0 2.5 3.4 1814 chr3R 6737498 intron pb - chr3R 6738405 intron pb - chr3R 6739312 intron pb - chr3R_12_6735001 chr3R_6735001 RAL-761 1034 chr3R 6784144 6784174 chr3R 6784310 6784340 9 166 1.5 2.5 2.0 3.0 196 chr3R 6784144 intergenic not near genes chr3R 6784242 intergenic not near genes chr3R 6784340 intergenic not near genes chr3R_9_6780001 chr3R_6780001 RAL-761 1035 chr3R 6828026 6828037 chr3R 6828100 6828112 4 74 2.5 3.5 3.0 1.0 86 chr3R 6828026 intron Scr - chr3R 6828069 intron Scr - chr3R 6828112 intron Scr - chr3R_4_6825001 chr3R_6825001 RAL-761 1036 chr3R 6842789 6842814 chr3R 6842872 6842897 5 82 1.0 3.0 2.0 1.7 108 chr3R 6842789 intron Scr - chr3R 6842843 intron Scr - chr3R 6842897 intron Scr - chr3R_5_6840001 chr3R_6840001 RAL-761 1037 chr3R 6918059 6918093 chr3R 6918137 6918171 7 78 1.0 2.5 1.8 2.5 112 chr3R 6918059 intron Antp - chr3R 6918115 intron Antp - chr3R 6918171 intron Antp - chr3R_7_6915001 chr3R_6915001 RAL-761 1038 chr3R 6978882 6978908 chr3R 6978967 6978993 5 85 4.0 2.0 3.0 1.2 111 chr3R 6978882 intron Antp - chr3R 6978938 intron Antp - chr3R 6978993 intron Antp - chr3R_5_6975001 chr3R_6975001 RAL-761 1039 chr3R 7030703 7030722 chr3R 7030779 7030798 4 76 4.5 2.0 3.2 1.0 95 chr3R 7030703 intergenic not near genes chr3R 7030750 intergenic not near genes chr3R 7030798 intergenic not near genes chr3R_4_7030001 chr3R_7030001 RAL-761 1040 chr3R 7076439 7076469 chr3R 7076529 7076559 7 89 2.5 5.0 3.8 1.5 120 chr3R 7076439 intron CG1943 + chr3R 7076499 intron CG1943 + chr3R 7076559 intron CG1943 + chr3R_7_7075001 chr3R_7075001 RAL-761 1041 chr3R 7103289 7103315 chr3R 7103365 7103391 12 73 6.5 4.0 5.2 1.9 102 chr3R 7103289 intron Alh - chr3R 7103340 intron Alh - chr3R 7103391 intron Alh - chr3R_12_7100001 chr3R_7100001 RAL-761 1042 chr3R 7103928 7103957 chr3R 7104027 7104056 13 97 2.5 3.0 2.8 3.4 128 chr3R 7103928 intron Alh - chr3R 7103992 intron Alh - chr3R 7104056 intron Alh - chr3R_13_7100001 chr3R_7100001 RAL-761 1043 chr3R 7125094 7125127 chr3R 7125181 7125214 13 87 1.0 4.0 2.5 3.7 120 chr3R 7125094 intron CG10098 + chr3R 7125154 intron CG10098 + chr3R 7125214 intron CG10098 + chr3R_13_7125001 chr3R_7125001 RAL-761 1044 chr3R 7226902 7226919 chr3R 7226991 7227010 4 88 3.5 7.5 5.5 0.6 108 chr3R 7226902 intron CG14608 + chr3R 7226956 intron CG14608 + chr3R 7227010 intron CG14608 + chr3R_4_7225001 chr3R_7225001 RAL-761 1045 chr3R 7328870 7328893 chr3R 7328953 7328973 4 82 4.5 3.5 4.0 0.8 103 chr3R 7328870 intergenic not near genes chr3R 7328922 intergenic not near genes chr3R 7328973 intergenic not near genes chr3R_4_7325001 chr3R_7325001 RAL-761 1046 chr3R 7415977 7416013 chr3R 7416123 7416159 11 145 2.5 1.5 2.0 3.7 182 chr3R 7415977 intergenic not near genes chr3R 7416068 intergenic not near genes chr3R 7416159 intergenic not near genes chr3R_11_7415001 chr3R_7415001 RAL-761 1047 chr3R 7548604 7548631 chr3R 7548682 7548710 5 79 0.5 2.0 1.2 2.3 106 chr3R 7548604 intron alpha-Est1 - chr3R 7548657 intron alpha-Est1 - chr3R 7548710 intron alpha-Est1 - chr3R_5_7545001 chr3R_7545001 RAL-761 1048 chr3R 7556936 7556962 chr3R 7557028 7557055 16 92 2.0 4.0 3.0 4.0 119 chr3R 7556936 intergenic not near genes chr3R 7556996 intergenic not near genes chr3R 7557055 intergenic not near genes chr3R_16_7555001 chr3R_7555001 RAL-761 1049 chr3R 7621552 7621564 chr3R 7621642 7621654 9 89 1.0 4.5 2.8 2.4 102 chr3R 7621552 intron CG34127 - chr3R 7621603 intron CG34127 - chr3R 7621654 intron CG34127 - chr3R_9_7620001 chr3R_7620001 RAL-761 1050 chr3R 7726154 7726190 chr3R 7726230 7726267 12 74 0.5 1.5 1.0 6.0 113 chr3R 7726154 intergenic not near genes chr3R 7726210 intergenic not near genes chr3R 7726267 intergenic not near genes chr3R_12_7725001 chr3R_7725001 RAL-761 1051 chr3R 7745601 7745614 chr3R 7745679 7745692 5 76 3.0 0.5 1.8 1.8 91 chr3R 7745601 intergenic not near genes chr3R 7745646 intergenic not near genes chr3R 7745692 intergenic not near genes chr3R_5_7745001 chr3R_7745001 RAL-761 1052 chr3R 7951460 7951495 chr3R 7951559 7951593 14 99 3.5 3.0 3.2 3.3 133 chr3R 7951460 intron dsx - chr3R 7951526 intron dsx - chr3R 7951593 intron dsx - chr3R_14_7950001 chr3R_7950001 RAL-761 1053 chr3R 7973317 7973342 chr3R 7974379 7974404 1360 6 1062 2.0 1.5 1.8 2.1 1087 chr3R 7973317 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974404 intergenic CD98hc - chr3R_6_7970001 chr3R_7970001 RAL-761 1054 chr3R 8033031 8033063 chr3R 8033120 8033152 11 88 1.5 2.5 2.0 3.7 121 chr3R 8033031 intergenic CG11035 -,unc-45 + chr3R 8033092 intergenic CG11035 -,unc-45 + chr3R 8033152 intergenic CG11035 -,unc-45 + chr3R_11_8030001 chr3R_8030001 RAL-761 1055 chr3R 8094406 8094436 chr3R 8099711 8099741 Transpac 7 5305 4.0 3.5 3.8 1.5 5335 chr3R 8094406 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099741 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-761 1056 chr3R 8101775 8101792 chr3R 8104849 8104862 G2 6 3076 2.5 1.0 1.8 2.1 3087 chr3R 8101775 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104862 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-761 1057 chr3R 8207557 8207584 chr3R 8208401 8208428 F-element 6 841 4.0 3.5 3.8 1.2 871 chr3R 8207557 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208428 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-761 1058 chr3R 8213022 8213031 chr3R 8213104 8213113 4 79 3.5 2.0 2.8 1.1 91 chr3R 8213022 intergenic not near genes chr3R 8213068 intergenic not near genes chr3R 8213113 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-761 1059 chr3R 8255509 8255539 chr3R 8255596 8255597 8 85 3.5 2.5 3.0 2.0 88 chr3R 8255509 intron mtg + chr3R 8255553 intron mtg + chr3R 8255597 intron mtg + chr3R_8_8255001 chr3R_8255001 RAL-761 1060 chr3R 8273736 8273763 chr3R 8273823 8273850 9 86 3.5 2.0 2.8 2.4 114 chr3R 8273736 intergenic not near genes chr3R 8273793 intergenic not near genes chr3R 8273850 intergenic not near genes chr3R_9_8270001 chr3R_8270001 RAL-761 1061 chr3R 8403007 8403041 chr3R 8412173 8412177 roo 11 9160 1.5 2.5 2.0 3.7 9170 chr3R 8403007 intron CG45263 - chr3R 8407592 intron CG45263 - chr3R 8412177 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-761 1062 chr3R 8472023 8472053 chr3R 8472376 8472406 11 349 1.5 2.0 1.8 3.9 383 chr3R 8472023 intron CG45263 - chr3R 8472214 intron CG45263 - chr3R 8472406 intron CG45263 - chr3R_11_8470001 chr3R_8470001 RAL-761 1063 chr3R 8570481 8570509 chr3R 8575117 8575132 HMS-Beagle 11 4634 3.0 4.5 3.8 2.3 4651 chr3R 8570481 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575132 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-761 1064 chr3R 8601767 8601800 chr3R 8610920 8610949 roo 10 9150 5.0 3.0 4.0 2.0 9182 chr3R 8601767 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610949 intron 5-HT2B + chr3R_10_8605001 chr3R_8605001 RAL-761 1065 chr3R 8642435 8642449 chr3R 8642504 8642526 9 73 1.5 3.5 2.5 2.6 91 chr3R 8642435 intergenic not near genes chr3R 8642480 intergenic not near genes chr3R 8642526 intergenic not near genes chr3R_9_8640001 chr3R_8640001 RAL-761 1066 chr3R 8707354 8707385 chr3R 8709794 8709826 jockey 16 2440 4.5 5.0 4.8 2.8 2472 chr3R 8707354 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_16_8705001 chr3R_8705001 RAL-761 1067 chr3R 8745749 8745774 chr3R 8745860 8745885 6 111 1.5 3.5 2.5 1.7 136 chr3R 8745749 intron CG9801 - chr3R 8745817 intron CG9801 - chr3R 8745885 intron CG9801 - chr3R_6_8745001 chr3R_8745001 RAL-761 1068 chr3R 8751736 8751766 chr3R 8751874 8751907 8 139 24.5 23.5 24.0 0.3 171 chr3R 8751736 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R 8751822 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R 8751907 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R_8_8750001 chr3R_8750001 RAL-761 1069 chr3R 8843507 8843537 chr3R 8843718 8843749 12 211 0.5 4.5 2.5 3.4 242 chr3R 8843507 intron pyd - chr3R 8843628 intron pyd - chr3R 8843749 intron pyd - chr3R_12_8840001 chr3R_8840001 RAL-761 1070 chr3R 8882066 8882088 chr3R 8882157 8882179 6 91 0.5 4.0 2.2 1.9 113 chr3R 8882066 intron pyd - chr3R 8882122 intron pyd - chr3R 8882179 intron pyd - chr3R_6_8880001 chr3R_8880001 RAL-761 1071 chr3R 8917893 8917911 chr3R 8917973 8917990 6 80 0.5 2.5 1.5 2.4 97 chr3R 8917893 intron pyd - chr3R 8917942 intron pyd - chr3R 8917990 intron pyd - chr3R_6_8915001 chr3R_8915001 RAL-761 1072 chr3R 8974634 8974650 chr3R 8974715 8974730 5 81 4.0 1.5 2.8 1.3 96 chr3R 8974634 intergenic not near genes chr3R 8974682 intergenic not near genes chr3R 8974730 intergenic not near genes chr3R_5_8970001 chr3R_8970001 RAL-761 1073 chr3R 8997374 8997396 chr3R 8997464 8997486 8 88 3.0 7.0 5.0 1.3 112 chr3R 8997374 intron CG31100 - chr3R 8997430 intron CG31100 - chr3R 8997486 intron CG31100 - chr3R_8_8995001 chr3R_8995001 RAL-761 1074 chr3R 9012326 9012334 chr3R 9012563 9012571 6 237 3.0 2.0 2.5 1.7 245 chr3R 9012326 intron CG11984 - chr3R 9012448 intron CG11984 - chr3R 9012571 intron CG11984 - chr3R_6_9010001 chr3R_9010001 RAL-761 1075 chr3R 9101837 9101868 chr3R 9101935 9101966 7 97 0.0 4.0 2.0 2.3 129 chr3R 9101837 intron pum - chr3R 9101902 intron pum - chr3R 9101966 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-761 1076 chr3R 9179493 9179519 chr3R 9181141 9181167 6 1648 2.5 2.0 2.2 1.9 1674 chr3R 9179493 intron pum - chr3R 9180330 intron pum - chr3R 9181167 intron pum - chr3R_6_9180001 chr3R_9180001 RAL-761 1077 chr3R 9278779 9278807 chr3R 9284039 9284067 Rt1a 10 5259 7.5 7.0 7.2 1.2 5288 chr3R 9278779 intergenic not near genes chr3R 9281423 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-761 1078 chr3R 9319575 9319607 chr3R 9320010 9320042 jockey 9 434 3.5 4.5 4.0 1.8 467 chr3R 9319575 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_9_9315001 chr3R_9315001 RAL-761 1079 chr3R 9382819 9382845 chr3R 9382944 9382970 10 124 4.0 3.5 3.8 2.1 151 chr3R 9382819 intron FER - chr3R 9382894 intron FER - chr3R 9382970 intron FER - chr3R_10_9380001 chr3R_9380001 RAL-761 1080 chr3R 9434693 9434722 chr3R 9434779 9434809 15 85 3.0 2.0 2.5 4.3 116 chr3R 9434693 intron ps + chr3R 9434751 intron ps + chr3R 9434809 intron ps + chr3R_15_9430001 chr3R_9430001 RAL-761 1081 chr3R 9599829 9599839 chr3R 9599985 9600013 4 169 2.0 3.5 2.8 1.1 184 chr3R 9599829 intron CG8312 + chr3R 9599921 intron CG8312 + chr3R 9600013 intron CG8312 + chr3R_4_9595001 chr3R_9595001 RAL-761 1082 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286580 11.5 19.5 15.5 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-761 1083 chr3R 9702260 9702289 chr3R 9702335 9702364 8 75 1.5 1.5 1.5 3.2 104 chr3R 9702260 intron Unc-115a - chr3R 9702312 intron Unc-115a - chr3R 9702364 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-761 1084 chr3R 9898791 9898819 chr3R 9898879 9898908 6 89 3.5 2.0 2.8 1.6 117 chr3R 9898791 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898908 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-761 1085 chr3R 10306957 10306985 chr3R 10312217 10312245 9 5260 23.5 6.5 15.0 0.6 5288 chr3R 10306957 exon CG43143 + chr3R 10309601 exon CG6293 - chr3R 10312245 3` UTR Bruce - chr3R_9_10305001 chr3R_10305001 RAL-761 1086 chr3R 10394079 10394090 chr3R 10394178 10394188 4 99 1.0 2.5 1.8 1.4 109 chr3R 10394079 intron cwo + chr3R 10394134 intron cwo + chr3R 10394188 intron cwo + chr3R_4_10390001 chr3R_10390001 RAL-761 1087 chr3R 10430684 10430706 chr3R 10430773 10430795 7 88 2.5 5.0 3.8 1.5 111 chr3R 10430684 intergenic not near genes chr3R 10430740 intergenic not near genes chr3R 10430795 intergenic not near genes chr3R_7_10430001 chr3R_10430001 RAL-761 1088 chr3R 10596628 10596648 chr3R 10596704 10596721 5 72 2.5 3.5 3.0 1.2 93 chr3R 10596628 intron hth - chr3R 10596674 intron hth - chr3R 10596721 intron hth - chr3R_5_10595001 chr3R_10595001 RAL-761 1089 chr3R 10723763 10723795 chr3R 10723854 10723887 10 91 2.0 0.5 1.2 4.5 124 chr3R 10723763 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723887 intergenic not near genes chr3R_10_10720001 chr3R_10720001 RAL-761 1090 chr3R 10727641 10727679 chr3R 10727721 10727759 13 76 3.0 3.0 3.0 3.2 118 chr3R 10727641 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_13_10725001 chr3R_10725001 RAL-761 1091 chr3R 10732336 10732343 chr3R 10733208 10733215 4 872 2.5 3.5 3.0 1.0 879 chr3R 10732336 intergenic not near genes chr3R 10732776 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-761 1092 chr3R 10904910 10904935 chr3R 10905114 10905138 8 204 3.5 2.5 3.0 2.0 228 chr3R 10904910 intergenic not near genes chr3R 10905024 intergenic not near genes chr3R 10905138 intergenic not near genes chr3R_8_10905001 chr3R_10905001 RAL-761 1093 chr3R 10919683 10919715 chr3R 10919761 10919792 7 77 3.0 2.5 2.8 1.8 109 chr3R 10919683 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919792 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-761 1094 chr3R 10920051 10920078 chr3R 10920129 10920156 7 78 1.0 6.5 3.8 1.5 105 chr3R 10920051 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-761 1095 chr3R 10971490 10971514 chr3R 10971581 10971582 8 87 6.0 4.5 5.2 1.3 92 chr3R 10971490 intergenic not near genes chr3R 10971536 intergenic not near genes chr3R 10971582 intergenic not near genes chr3R_8_10970001 chr3R_10970001 RAL-761 1096 chr3R 11043108 11043121 chr3R 11043201 11043225 10 102 4.0 2.5 3.2 2.4 117 chr3R 11043108 intron CG34114 + chr3R 11043166 intron CG34114 + chr3R 11043225 intron CG34114 + chr3R_10_11040001 chr3R_11040001 RAL-761 1097 chr3R 11087437 11087466 chr3R 11087513 11087542 5 76 1.0 1.0 1.0 2.5 105 chr3R 11087437 intergenic not near genes chr3R 11087490 intergenic not near genes chr3R 11087542 intergenic not near genes chr3R_5_11085001 chr3R_11085001 RAL-761 1098 chr3R 11099661 11099676 chr3R 11099792 11099804 5 130 2.5 4.5 3.5 1.1 143 chr3R 11099661 intergenic not near genes chr3R 11099732 intergenic not near genes chr3R 11099804 intergenic not near genes chr3R_5_11095001 chr3R_11095001 RAL-761 1099 chr3R 11102334 11102354 chr3R 11102411 11102433 8 78 3.0 4.0 3.5 1.8 99 chr3R 11102334 intergenic not near genes chr3R 11102384 intergenic not near genes chr3R 11102433 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-761 1100 chr3R 11103170 11103181 chr3R 11103252 11103263 4 82 0.0 0.0 0.0 4.0 93 chr3R 11103170 intergenic not near genes chr3R 11103216 intergenic not near genes chr3R 11103263 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-761 1101 chr3R 11151142 11151148 chr3R 11151321 11151329 4 184 3.0 3.5 3.2 1.0 187 chr3R 11151142 3` UTR Ugt86Di - chr3R 11151236 3` UTR Ugt86Di - chr3R 11151329 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-761 1102 chr3R 11197987 11198016 chr3R 11198085 11198115 5 97 4.0 3.0 3.5 1.1 128 chr3R 11197987 intron cu + chr3R 11198051 intron cu + chr3R 11198115 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-761 1103 chr3R 11307197 11307216 chr3R 11307282 11307303 5 86 3.0 1.5 2.2 1.6 106 chr3R 11307197 intergenic not near genes chr3R 11307250 intergenic not near genes chr3R 11307303 intergenic not near genes chr3R_5_11305001 chr3R_11305001 RAL-761 1104 chr3R 11442336 11442369 chr3R 11442521 11442554 7 184 4.0 2.0 3.0 1.8 218 chr3R 11442336 intron,intron sals -,CG17230 + chr3R 11442445 intron,intron sals -,CG17230 + chr3R 11442554 intron,intron sals -,CG17230 + chr3R_7_11440001 chr3R_11440001 RAL-761 1105 chr3R 11518815 11518841 chr3R 11518906 11518932 6 91 2.0 4.0 3.0 1.5 117 chr3R 11518815 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518932 intergenic not near genes chr3R_6_11515001 chr3R_11515001 RAL-761 1106 chr3R 11694731 11694743 chr3R 11694822 11694835 4 92 2.0 2.5 2.2 1.2 104 chr3R 11694731 intergenic Fer3 - chr3R 11694783 intergenic Fer3 - chr3R 11694835 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-761 1107 chr3R 11734165 11734189 chr3R 11734280 11734303 5 113 2.0 2.5 2.2 1.6 138 chr3R 11734165 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734303 intergenic not near genes chr3R_5_11730001 chr3R_11730001 RAL-761 1108 chr3R 11841084 11841096 chr3R 11846250 11846287 BS 8 5185 2.5 3.5 3.0 2.0 5203 chr3R 11841084 intron CG6959 - chr3R 11843686 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-761 1109 chr3R 11853434 11853464 chr3R 11853583 11853611 5 147 1.0 1.0 1.0 2.5 177 chr3R 11853434 intron CG6959 - chr3R 11853522 intron CG6959 - chr3R 11853611 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-761 1110 chr3R 11853777 11853805 chr3R 11853882 11853910 8 105 1.0 6.0 3.5 1.8 133 chr3R 11853777 intron CG6959 - chr3R 11853844 intron CG6959 - chr3R 11853910 intron CG6959 - chr3R_8_11850001 chr3R_11850001 RAL-761 1111 chr3R 11945387 11945406 chr3R 11945481 11945502 14 96 3.5 1.5 2.5 4.0 115 chr3R 11945387 intron Cad87A - chr3R 11945444 intron Cad87A - chr3R 11945502 intron Cad87A - chr3R_14_11945001 chr3R_11945001 RAL-761 1112 chr3R 11995007 11995017 chr3R 11995075 11995096 4 70 1.0 2.0 1.5 1.6 89 chr3R 11995007 exon Tk - chr3R 11995052 exon Tk - chr3R 11995096 exon Tk - chr3R_4_11995001 chr3R_11995001 RAL-761 1113 chr3R 12111902 12111916 chr3R 12111978 12111991 5 73 0.0 4.0 2.0 1.7 89 chr3R 12111902 intergenic dpr17 + chr3R 12111946 intergenic not near genes chr3R 12111991 intergenic not near genes chr3R_5_12110001 chr3R_12110001 RAL-761 1114 chr3R 12182956 12182987 chr3R 12183040 12183071 12 82 2.5 5.0 3.8 2.5 115 chr3R 12182956 intergenic not near genes chr3R 12183014 intergenic not near genes chr3R 12183071 intergenic not near genes chr3R_12_12180001 chr3R_12180001 RAL-761 1115 chr3R 12246768 12246795 chr3R 12246852 12246879 13 83 5.0 1.5 3.2 3.1 111 chr3R 12246768 intergenic not near genes chr3R 12246824 intergenic not near genes chr3R 12246879 intergenic not near genes chr3R_13_12245001 chr3R_12245001 RAL-761 1116 chr3R 12388878 12388910 chr3R 12388964 12388997 8 82 4.0 4.0 4.0 1.6 119 chr3R 12388878 intron CG34402 + chr3R 12388938 intron CG34402 + chr3R 12388997 intron CG34402 + chr3R_8_12385001 chr3R_12385001 RAL-761 1117 chr3R 12568496 12568529 chr3R 12568575 12568599 14 78 2.0 1.5 1.8 5.0 103 chr3R 12568496 intron Octbeta2R - chr3R 12568548 intron Octbeta2R - chr3R 12568599 intron Octbeta2R - chr3R_14_12565001 chr3R_12565001 RAL-761 1118 chr3R 12599376 12599392 chr3R 12599453 12599475 4 82 6.0 2.0 4.0 0.8 99 chr3R 12599376 intergenic not near genes chr3R 12599426 intergenic not near genes chr3R 12599475 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-761 1119 chr3R 12876952 12876973 chr3R 12877035 12877056 8 83 3.5 2.0 2.8 2.1 104 chr3R 12876952 intergenic not near genes chr3R 12877004 intergenic not near genes chr3R 12877056 intergenic not near genes chr3R_8_12875001 chr3R_12875001 RAL-761 1120 chr3R 12920151 12920176 chr3R 12925354 12925376 copia 8 5199 2.5 2.0 2.2 2.5 5225 chr3R 12920151 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925376 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-761 1121 chr3R 12972562 12972582 chr3R 12972700 12972721 6 139 3.5 3.5 3.5 1.3 159 chr3R 12972562 intron CG7381 - chr3R 12972642 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-761 1122 chr3R 13045794 13045796 chr3R 13053030 13053033 5 7237 37.0 30.5 33.8 0.1 7239 chr3R 13045794 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053033 exon pic + chr3R_5_13045001 chr3R_13045001 RAL-761 1123 chr3R 13059964 13059972 chr3R 13060158 13060167 4 195 1.0 3.5 2.2 1.2 203 chr3R 13059964 intron sim + chr3R 13060066 intron sim + chr3R 13060167 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-761 1124 chr3R 13104419 13104420 chr3R 21907534 21907534 5 8803115 18.5 19.5 19.0 0.2 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-761 1125 chr3R 13143039 13143065 chr3R 13148613 13148620 mdg3 7 5571 1.0 6.0 3.5 1.6 5581 chr3R 13143039 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145830 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148620 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-761 1126 chr3R 13222778 13222810 chr3R 13222860 13222878 7 78 2.5 1.5 2.0 2.3 100 chr3R 13222778 intergenic Ace - chr3R 13222828 intergenic Ace - chr3R 13222878 intergenic Ace - chr3R_7_13220001 chr3R_13220001 RAL-761 1127 chr3R 13274230 13274240 chr3R 13274302 13274310 5 73 3.0 0.0 1.5 2.0 80 chr3R 13274230 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274310 intergenic not near genes chr3R_5_13270001 chr3R_13270001 RAL-761 1128 chr3R 13376293 13376301 chr3R 13376360 13376380 8 75 1.5 2.5 2.0 2.7 87 chr3R 13376293 intron CG9813 - chr3R 13376336 intron CG9813 - chr3R 13376380 intron CG9813 - chr3R_8_13375001 chr3R_13375001 RAL-761 1129 chr3R 13505856 13505862 chr3R 13505931 13505932 4 74 5.0 3.0 4.0 0.8 76 chr3R 13505856 intergenic not near genes chr3R 13505894 intergenic not near genes chr3R 13505932 intergenic not near genes chr3R_4_13505001 chr3R_13505001 RAL-761 1130 chr3R 13571367 13571387 chr3R 13571457 13571485 6 97 4.0 4.5 4.2 1.2 118 chr3R 13571367 intergenic not near genes chr3R 13571426 intergenic not near genes chr3R 13571485 intergenic not near genes chr3R_6_13570001 chr3R_13570001 RAL-761 1131 chr3R 13600781 13600802 chr3R 13600877 13600899 6 100 3.0 0.5 1.8 2.1 118 chr3R 13600781 intergenic not near genes chr3R 13600840 intergenic not near genes chr3R 13600899 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-761 1132 chr3R 13603061 13603074 chr3R 13603152 13603165 4 91 3.0 1.0 2.0 1.3 104 chr3R 13603061 intergenic not near genes chr3R 13603113 intergenic not near genes chr3R 13603165 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-761 1133 chr3R 13607174 13607208 chr3R 13607279 13607313 10 102 5.5 4.0 4.8 1.7 139 chr3R 13607174 3` UTR CG9759 - chr3R 13607244 3` UTR CG9759 - chr3R 13607313 3` UTR CG9759 - chr3R_10_13605001 chr3R_13605001 RAL-761 1134 chr3R 13630741 13630755 chr3R 13630889 13630903 5 148 0.5 1.5 1.0 2.5 162 chr3R 13630741 intergenic CR45594 - chr3R 13630822 intergenic CR45594 - chr3R 13630903 3` UTR CR45594 - chr3R_5_13630001 chr3R_13630001 RAL-761 1135 chr3R 13669092 13669117 chr3R 13669186 13669213 7 96 1.5 2.0 1.8 2.5 121 chr3R 13669092 intron Task6 - chr3R 13669152 intron Task6 - chr3R 13669213 intron Task6 - chr3R_7_13665001 chr3R_13665001 RAL-761 1136 chr3R 13672941 13672975 chr3R 13673019 13673053 9 78 2.5 2.0 2.2 2.8 112 chr3R 13672941 intron Task6 - chr3R 13672997 intron Task6 - chr3R 13673053 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-761 1137 chr3R 13693028 13693028 chr3R 21907534 21907536 8 8214507 8.5 19.5 14.0 0.5 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-761 1138 chr3R 13700143 13700160 chr3R 13700220 13700236 11 77 2.5 3.0 2.8 2.9 93 chr3R 13700143 5` UTR f-cup - chr3R 13700190 intron f-cup - chr3R 13700236 intron f-cup - chr3R_11_13700001 chr3R_13700001 RAL-761 1139 chr3R 13782051 13782077 chr3R 13782132 13782158 9 81 3.0 3.5 3.2 2.1 107 chr3R 13782051 exon CG9286 + chr3R 13782104 intergenic CG9286 +,Dip-B + chr3R 13782158 intergenic CG9286 +,Dip-B + chr3R_9_13780001 chr3R_13780001 RAL-761 1140 chr3R 13846181 13846209 chr3R 13846279 13846306 6 98 4.0 3.5 3.8 1.2 125 chr3R 13846181 intergenic not near genes chr3R 13846244 intergenic not near genes chr3R 13846306 intergenic not near genes chr3R_6_13845001 chr3R_13845001 RAL-761 1141 chr3R 13925986 13926008 chr3R 13926063 13926074 6 72 9.5 3.0 6.2 0.8 88 chr3R 13925986 intergenic not near genes chr3R 13926030 intergenic not near genes chr3R 13926074 intergenic not near genes chr3R_6_13925001 chr3R_13925001 RAL-761 1142 chr3R 13974528 13974536 chr3R 13974605 13974613 4 77 0.0 2.0 1.0 2.0 85 chr3R 13974528 intron,5` UTR rdx -,CR43460 + chr3R 13974570 intron,5` UTR rdx -,CR43460 + chr3R 13974613 intron,5` UTR rdx -,CR43460 + chr3R_4_13970001 chr3R_13970001 RAL-761 1143 chr3R 13975374 13975400 chr3R 13975452 13975480 6 79 3.5 0.5 2.0 2.0 106 chr3R 13975374 intron rdx - chr3R 13975427 intron rdx - chr3R 13975480 intron rdx - chr3R_6_13975001 chr3R_13975001 RAL-761 1144 chr3R 14029861 14029865 chr3R 14029949 14029952 4 88 1.5 1.5 1.5 1.6 91 chr3R 14029861 intron,intron rdx -,Cyp6d5 + chr3R 14029906 intron,intron rdx -,Cyp6d5 + chr3R 14029952 intron,intron rdx -,Cyp6d5 + chr3R_4_14025001 chr3R_14025001 RAL-761 1145 chr3R 14067143 14067152 chr3R 14067222 14067231 4 79 4.0 3.0 3.5 0.9 88 chr3R 14067143 exon foxo + chr3R 14067187 intron foxo + chr3R 14067231 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-761 1146 chr3R 14117439 14117473 chr3R 14117515 14117545 5 75 1.5 2.0 1.8 1.8 106 chr3R 14117439 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117545 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-761 1147 chr3R 14174954 14174991 chr3R 14175041 14175078 12 85 4.0 4.0 4.0 2.4 124 chr3R 14174954 3` UTR Dop1R1 - chr3R 14175016 3` UTR Dop1R1 - chr3R 14175078 3` UTR Dop1R1 - chr3R_12_14175001 chr3R_14175001 RAL-761 1148 chr3R 14180830 14180832 chr3R 14185578 14185586 F-element 4 4758 1.5 1.0 1.2 1.8 4756 chr3R 14180830 intron Dop1R1 - chr3R 14183208 intron Dop1R1 - chr3R 14185586 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-761 1149 chr3R 14194428 14194456 chr3R 14203575 14203605 roo 8 9148 2.5 1.5 2.0 2.7 9177 chr3R 14194428 intron Dop1R1 - chr3R 14199016 intron Dop1R1 - chr3R 14203605 intron Dop1R1 - chr3R_8_14195001 chr3R_14195001 RAL-761 1150 chr3R 14212072 14212089 chr3R 14212301 14212322 8 231 1.0 3.5 2.2 2.5 250 chr3R 14212072 intron Dop1R1 - chr3R 14212197 intron Dop1R1 - chr3R 14212322 intron Dop1R1 - chr3R_8_14210001 chr3R_14210001 RAL-761 1151 chr3R 14295539 14295561 chr3R 14295622 14295644 7 81 0.5 4.0 2.2 2.2 105 chr3R 14295539 intron CG12207 + chr3R 14295592 intron CG12207 + chr3R 14295644 intron CG12207 + chr3R_7_14295001 chr3R_14295001 RAL-761 1152 chr3R 14331755 14331784 chr3R 14331845 14331872 4 90 2.0 3.5 2.8 1.1 117 chr3R 14331755 intron NK7.1 - chr3R 14331814 intron NK7.1 - chr3R 14331872 intron NK7.1 - chr3R_4_14330001 chr3R_14330001 RAL-761 1153 chr3R 14426058 14426079 chr3R 14426157 14426183 4 102 1.5 1.5 1.5 1.6 125 chr3R 14426058 intron cv-c - chr3R 14426120 intron cv-c - chr3R 14426183 intron cv-c - chr3R_4_14425001 chr3R_14425001 RAL-761 1154 chr3R 14440730 14440750 chr3R 14440805 14440818 6 74 3.0 0.5 1.8 2.1 88 chr3R 14440730 intron cv-c - chr3R 14440774 intron cv-c - chr3R 14440818 intron cv-c - chr3R_6_14440001 chr3R_14440001 RAL-761 1155 chr3R 14466987 14467014 chr3R 14467069 14467096 7 81 2.5 3.0 2.8 1.8 109 chr3R 14466987 intron cv-c - chr3R 14467042 intron cv-c - chr3R 14467096 intron cv-c - chr3R_7_14465001 chr3R_14465001 RAL-761 1156 chr3R 14478246 14478271 chr3R 14478333 14478348 14 86 3.5 3.0 3.2 3.3 102 chr3R 14478246 intron cv-c - chr3R 14478297 intron cv-c - chr3R 14478348 intron cv-c - chr3R_14_14475001 chr3R_14475001 RAL-761 1157 chr3R 14527407 14527415 chr3R 14527479 14527492 6 75 5.5 3.0 4.2 1.2 85 chr3R 14527407 intron Pde6 - chr3R 14527450 intron Pde6 - chr3R 14527492 intron Pde6 - chr3R_6_14525001 chr3R_14525001 RAL-761 1158 chr3R 14704383 14704416 chr3R 14704459 14704492 10 75 5.0 3.0 4.0 2.0 109 chr3R 14704383 intron kibra - chr3R 14704438 intron kibra - chr3R 14704492 intron kibra - chr3R_10_14700001 chr3R_14700001 RAL-761 1159 chr3R 14787135 14787141 chr3R 14787547 14787554 4 413 6.0 3.0 4.5 0.7 419 chr3R 14787135 intron jvl + chr3R 14787344 intron jvl + chr3R 14787554 intron jvl + chr3R_4_14785001 chr3R_14785001 RAL-761 1160 chr3R 14947740 14947772 chr3R 14952128 14952160 15 4388 5.5 4.0 4.8 2.6 4420 chr3R 14947740 intergenic not near genes chr3R 14949950 intergenic not near genes chr3R 14952160 intergenic not near genes chr3R_15_14945001 chr3R_14945001 RAL-761 1161 chr3R 14983211 14983247 chr3R 14983610 14983646 12 396 0.5 3.5 2.0 4.0 435 chr3R 14983211 intergenic not near genes chr3R 14983428 intergenic not near genes chr3R 14983646 intergenic not near genes chr3R_12_14980001 chr3R_14980001 RAL-761 1162 chr3R 14995727 14995731 chr3R 14995783 14995814 5 78 0.5 3.0 1.8 1.8 87 chr3R 14995727 intergenic not near genes chr3R 14995770 intergenic not near genes chr3R 14995814 intergenic not near genes chr3R_5_14995001 chr3R_14995001 RAL-761 1163 chr3R 15040873 15040894 chr3R 15040998 15041018 6 124 3.0 3.0 3.0 1.5 145 chr3R 15040873 intergenic not near genes chr3R 15040946 intergenic not near genes chr3R 15041018 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-761 1164 chr3R 15058225 15058242 chr3R 15058307 15058327 5 83 2.5 0.5 1.5 2.0 102 chr3R 15058225 intron dpr9 - chr3R 15058276 intron dpr9 - chr3R 15058327 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-761 1165 chr3R 15084152 15084171 chr3R 15084278 15084303 6 130 1.5 1.0 1.2 2.7 151 chr3R 15084152 intron CG6966 - chr3R 15084228 intron CG6966 - chr3R 15084303 intron CG6966 - chr3R_6_15080001 chr3R_15080001 RAL-761 1166 chr3R 15088073 15088103 chr3R 15088170 15088200 5 97 3.5 0.5 2.0 1.7 127 chr3R 15088073 intron CG6966 - chr3R 15088136 intron CG6966 - chr3R 15088200 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-761 1167 chr3R 15132062 15132084 chr3R 15135113 15135129 Juan 6 3056 7.5 6.0 6.8 0.8 3067 chr3R 15132062 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135129 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-761 1168 chr3R 15160572 15160591 chr3R 15160669 15160689 5 98 1.0 2.0 1.5 2.0 117 chr3R 15160572 intron Gyc88E + chr3R 15160630 intron Gyc88E + chr3R 15160689 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-761 1169 chr3R 15601164 15601195 chr3R 15608686 15608715 412 11 7520 4.0 6.0 5.0 1.8 7551 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-761 1170 chr3R 15618730 15618763 chr3R 15626203 15626237 blood 9 7472 2.0 4.0 3.0 2.2 7507 chr3R 15618730 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-761 1171 chr3R 15642550 15642561 chr3R 15642628 15642639 4 78 2.5 2.5 2.5 1.1 89 chr3R 15642550 intergenic not near genes chr3R 15642594 intergenic not near genes chr3R 15642639 intergenic not near genes chr3R_4_15640001 chr3R_15640001 RAL-761 1172 chr3R 15734179 15734204 chr3R 15734261 15734295 8 87 1.0 0.5 0.8 4.4 116 chr3R 15734179 intergenic not near genes chr3R 15734237 intergenic not near genes chr3R 15734295 intergenic not near genes chr3R_8_15730001 chr3R_15730001 RAL-761 1173 chr3R 15790153 15790274 chr3R 15790243 15790387 4 106 4.5 7.5 6.0 0.6 234 chr3R 15790153 exon c(3)G - chr3R 15790270 exon c(3)G - chr3R 15790387 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-761 1174 chr3R 15790383 15790404 chr3R 15790572 15790600 9 195 8.0 13.5 10.8 0.8 217 chr3R 15790383 exon c(3)G - chr3R 15790492 exon c(3)G - chr3R 15790600 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-761 1175 chr3R 15790838 15790864 chr3R 15790954 15790980 5 115 8.5 15.0 11.8 0.4 142 chr3R 15790838 exon c(3)G - chr3R 15790909 intron c(3)G - chr3R 15790980 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-761 1176 chr3R 15924192 15924226 chr3R 15924280 15924315 5 87 3.5 3.0 3.2 1.2 123 chr3R 15924192 intron CG4221 + chr3R 15924254 intron CG4221 + chr3R 15924315 intron CG4221 + chr3R_5_15920001 chr3R_15920001 RAL-761 1177 chr3R 16128448 16128469 chr3R 16128522 16128546 9 81 1.5 6.0 3.8 1.9 98 chr3R 16128448 intron Sb + chr3R 16128497 intron Sb + chr3R 16128546 intron Sb + chr3R_9_16125001 chr3R_16125001 RAL-761 1178 chr3R 16246524 16246555 chr3R 16246600 16246631 5 72 0.0 5.0 2.5 1.4 107 chr3R 16246524 intron tara + chr3R 16246578 intron tara + chr3R 16246631 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-761 1179 chr3R 16334002 16334033 chr3R 16334304 16334335 7 302 4.5 1.5 3.0 1.8 333 chr3R 16334002 intron Sulf1 - chr3R 16334168 intron Sulf1 - chr3R 16334335 intron Sulf1 - chr3R_7_16330001 chr3R_16330001 RAL-761 1180 chr3R 16472587 16472598 chr3R 16472655 16472662 4 67 6.5 5.0 5.8 0.6 75 chr3R 16472587 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-761 1181 chr3R 16731932 16732072 chr3R 16732012 16732149 8 77 0.0 3.0 1.5 3.2 217 chr3R 16731932 intron Ubx - chr3R 16732040 intron Ubx - chr3R 16732149 intron Ubx - chr3R_8_16730001 chr3R_16730001 RAL-761 1182 chr3R 16756320 16756348 chr3R 16762511 16762536 diver 10 6189 4.5 2.0 3.2 2.4 6216 chr3R 16756320 intron bxd - chr3R 16759428 intron bxd - chr3R 16762536 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-761 1183 chr3R 16862043 16862062 chr3R 16862228 16862247 5 185 4.5 4.0 4.2 1.0 204 chr3R 16862043 intron iab-8 - chr3R 16862145 intron iab-8 - chr3R 16862247 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-761 1184 chr3R 17065564 17065592 chr3R 17065838 17065857 4 270 4.0 2.5 3.2 1.0 293 chr3R 17065564 intron Dad + chr3R 17065710 intron Dad + chr3R 17065857 intron Dad + chr3R_4_17065001 chr3R_17065001 RAL-761 1185 chr3R 17179281 17179303 chr3R 17179365 17179387 8 84 3.5 1.5 2.5 2.3 106 chr3R 17179281 intron Mur89F - chr3R 17179334 intron Mur89F - chr3R 17179387 intron Mur89F - chr3R_8_17175001 chr3R_17175001 RAL-761 1186 chr3R 17226014 17226049 chr3R 17226113 17226148 9 98 2.0 4.5 3.2 2.1 134 chr3R 17226014 intergenic not near genes chr3R 17226081 intergenic not near genes chr3R 17226148 intergenic not near genes chr3R_9_17225001 chr3R_17225001 RAL-761 1187 chr3R 17250235 17250260 chr3R 17250372 17250394 5 133 1.5 2.0 1.8 1.8 159 chr3R 17250235 intron beat-IIb - chr3R 17250314 intron beat-IIb - chr3R 17250394 intron beat-IIb - chr3R_5_17250001 chr3R_17250001 RAL-761 1188 chr3R 17268679 17268698 chr3R 17268796 17268820 5 118 0.5 2.0 1.2 2.3 141 chr3R 17268679 intergenic not near genes chr3R 17268750 intergenic not near genes chr3R 17268820 intergenic not near genes chr3R_5_17265001 chr3R_17265001 RAL-761 1189 chr3R 17273969 17273998 chr3R 17274076 17274105 11 106 4.5 1.0 2.8 2.9 136 chr3R 17273969 intergenic not near genes chr3R 17274037 intergenic not near genes chr3R 17274105 intergenic not near genes chr3R_11_17270001 chr3R_17270001 RAL-761 1190 chr3R 17294668 17294697 chr3R 17295096 17295125 BS 9 428 1.0 2.5 1.8 3.2 457 chr3R 17294668 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295125 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-761 1191 chr3R 17335158 17335183 chr3R 17335234 17335259 8 74 2.5 1.0 1.8 2.9 101 chr3R 17335158 intron beat-IIa - chr3R 17335208 intron beat-IIa - chr3R 17335259 intron beat-IIa - chr3R_8_17335001 chr3R_17335001 RAL-761 1192 chr3R 17348722 17348738 chr3R 17348811 17348827 9 89 5.5 4.5 5.0 1.5 105 chr3R 17348722 intron beat-IIa - chr3R 17348774 intron beat-IIa - chr3R 17348827 intron beat-IIa - chr3R_9_17345001 chr3R_17345001 RAL-761 1193 chr3R 17348740 17348754 chr3R 17348809 17348836 5 81 3.0 4.5 3.8 1.0 96 chr3R 17348740 intron beat-IIa - chr3R 17348788 intron beat-IIa - chr3R 17348836 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-761 1194 chr3R 17461204 17461229 chr3R 17461286 17461311 6 80 1.0 1.0 1.0 3.0 107 chr3R 17461204 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-761 1195 chr3R 17497964 17497992 chr3R 17498049 17498077 5 86 2.0 2.0 2.0 1.7 113 chr3R 17497964 intron Dscam3 - chr3R 17498020 intron Dscam3 - chr3R 17498077 intron Dscam3 - chr3R_5_17495001 chr3R_17495001 RAL-761 1196 chr3R 17591287 17591301 chr3R 17591723 17591732 F-element 4 435 6.5 2.5 4.5 0.7 445 chr3R 17591287 intergenic not near genes chr3R 17591510 intergenic not near genes chr3R 17591732 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-761 1197 chr3R 17591303 17591323 chr3R 17591721 17591731 F-element 5 421 1.5 2.5 2.0 1.7 428 chr3R 17591303 intergenic not near genes chr3R 17591517 intergenic not near genes chr3R 17591731 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-761 1198 chr3R 17823199 17823227 chr3R 17823276 17823303 6 76 2.0 3.0 2.5 1.7 104 chr3R 17823199 intron tinc + chr3R 17823251 intron tinc + chr3R 17823303 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-761 1199 chr3R 17925881 17925887 chr3R 17927321 17927354 hobo 6 1461 7.0 8.0 7.5 0.7 1473 chr3R 17925881 intron cpo + chr3R 17926618 intron cpo + chr3R 17927354 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-761 1200 chr3R 18025340 18025365 chr3R 18025421 18025446 7 81 1.5 3.0 2.2 2.2 106 chr3R 18025340 3` UTR CG7794 + chr3R 18025393 intergenic CG7794 + chr3R 18025446 intergenic CG7794 + chr3R_7_18025001 chr3R_18025001 RAL-761 1201 chr3R 18032785 18032807 chr3R 18040453 18040475 opus 4 7668 0.0 0.0 0.0 4.0 7690 chr3R 18032785 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040475 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-761 1202 chr3R 18068001 18068019 chr3R 18068083 18068101 4 82 0.0 4.0 2.0 1.3 100 chr3R 18068001 intergenic not near genes chr3R 18068051 intergenic not near genes chr3R 18068101 intergenic not near genes chr3R_4_18065001 chr3R_18065001 RAL-761 1203 chr3R 18501596 18501629 chr3R 18501677 18501710 11 81 1.5 5.5 3.5 2.4 114 chr3R 18501596 intron fru - chr3R 18501653 intron fru - chr3R 18501710 intron fru - chr3R_11_18500001 chr3R_18500001 RAL-761 1204 chr3R 18537234 18537259 chr3R 18537318 18537342 13 83 4.0 2.0 3.0 3.2 108 chr3R 18537234 intron fru - chr3R 18537288 intron fru - chr3R 18537342 intron fru - chr3R_13_18535001 chr3R_18535001 RAL-761 1205 chr3R 18615377 18615406 chr3R 18615465 18615478 5 85 1.0 2.0 1.5 2.0 101 chr3R 18615377 intron,intron qin +,CG14304 - chr3R 18615428 intron,intron qin +,CG14304 - chr3R 18615478 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-761 1206 chr3R 18629030 18629036 chr3R 18629120 18629126 4 90 0.0 0.5 0.2 3.3 96 chr3R 18629030 intron qin + chr3R 18629078 intron qin + chr3R 18629126 intron qin + chr3R_4_18625001 chr3R_18625001 RAL-761 1207 chr3R 18635213 18635226 chr3R 18635313 18635328 6 101 6.0 6.0 6.0 0.9 115 chr3R 18635213 intron,intron qin +,CG14301 - chr3R 18635270 intron,intron qin +,CG14301 - chr3R 18635328 intron,intron qin +,CG14301 - chr3R_6_18635001 chr3R_18635001 RAL-761 1208 chr3R 18695763 18695772 chr3R 18695847 18695857 6 84 4.0 0.0 2.0 2.0 94 chr3R 18695763 3` UTR CG34282 + chr3R 18695810 intergenic CG34282 + chr3R 18695857 intergenic CG34282 + chr3R_6_18695001 chr3R_18695001 RAL-761 1209 chr3R 18730025 18730030 chr3R 18730101 18730106 4 75 4.0 1.5 2.8 1.1 81 chr3R 18730025 intron Cha + chr3R 18730066 intron Cha + chr3R 18730106 intron Cha + chr3R_4_18730001 chr3R_18730001 RAL-761 1210 chr3R 18791504 18791515 chr3R 18791577 18791591 4 76 2.5 2.0 2.2 1.2 87 chr3R 18791504 intron CG7720 - chr3R 18791548 intron CG7720 - chr3R 18791591 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-761 1211 chr3R 18812078 18812108 chr3R 18812156 18812186 19 77 2.5 7.5 5.0 3.2 108 chr3R 18812078 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_19_18810001 chr3R_18810001 RAL-761 1212 chr3R 18932978 18933007 chr3R 18933100 18933128 12 122 5.5 5.0 5.2 1.9 150 chr3R 18932978 intron CG42613 + chr3R 18933053 intron CG42613 + chr3R 18933128 intron CG42613 + chr3R_12_18930001 chr3R_18930001 RAL-761 1213 chr3R 19136409 19136416 chr3R 19139798 19139804 Bari1 4 3389 36.5 9.0 22.8 0.2 3395 chr3R 19136409 exon Cyp12a4 + chr3R 19138106 intergenic not near genes chr3R 19139804 3` UTR Ppcs - chr3R_4_19135001 chr3R_19135001 RAL-761 1214 chr3R 19140266 19140301 chr3R 19140714 19140747 16 445 4.0 4.0 4.0 3.2 481 chr3R 19140266 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140747 3` UTR Ppcs - chr3R_16_19140001 chr3R_19140001 RAL-761 1215 chr3R 19193002 19193010 chr3R 19197291 19197314 F-element 5 4297 0.5 4.0 2.2 1.6 4312 chr3R 19193002 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197314 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-761 1216 chr3R 19276932 19276941 chr3R 19277010 19277021 5 79 2.5 0.5 1.5 2.0 89 chr3R 19276932 intergenic not near genes chr3R 19276976 intergenic not near genes chr3R 19277021 intergenic not near genes chr3R_5_19275001 chr3R_19275001 RAL-761 1217 chr3R 19340396 19340430 chr3R 19340473 19340507 8 76 2.0 3.0 2.5 2.3 111 chr3R 19340396 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340507 intergenic not near genes chr3R_8_19340001 chr3R_19340001 RAL-761 1218 chr3R 19570315 19570340 chr3R 19570391 19570416 8 76 3.0 8.0 5.5 1.2 101 chr3R 19570315 intron Dys + chr3R 19570366 intron Dys + chr3R 19570416 intron Dys + chr3R_8_19570001 chr3R_19570001 RAL-761 1219 chr3R 19957272 19957300 chr3R 19957348 19957376 6 71 1.0 4.0 2.5 1.7 104 chr3R 19957272 intron Hs6st - chr3R 19957324 intron Hs6st - chr3R 19957376 intron Hs6st - chr3R_6_19955001 chr3R_19955001 RAL-761 1220 chr3R 20066118 20066136 chr3R 20066308 20066325 8 190 4.0 1.5 2.8 2.1 207 chr3R 20066118 intergenic not near genes chr3R 20066222 intergenic not near genes chr3R 20066325 intergenic not near genes chr3R_8_20065001 chr3R_20065001 RAL-761 1221 chr3R 20066557 20066562 chr3R 20066791 20066798 4 236 2.5 2.5 2.5 1.1 241 chr3R 20066557 intergenic not near genes chr3R 20066678 intergenic not near genes chr3R 20066798 intergenic not near genes chr3R_4_20065001 chr3R_20065001 RAL-761 1222 chr3R 20066572 20066582 chr3R 20066789 20066813 5 231 1.0 2.5 1.8 1.8 241 chr3R 20066572 intergenic not near genes chr3R 20066692 intergenic not near genes chr3R 20066813 intergenic not near genes chr3R_5_20065001 chr3R_20065001 RAL-761 1223 chr3R 20077039 20077056 chr3R 20077125 20077127 6 83 4.5 1.0 2.8 1.6 88 chr3R 20077039 intergenic not near genes chr3R 20077083 intergenic not near genes chr3R 20077127 intergenic not near genes chr3R_6_20075001 chr3R_20075001 RAL-761 1224 chr3R 20109538 20109568 chr3R 20114744 20114774 copia 6 5206 1.5 4.0 2.8 1.6 5236 chr3R 20109538 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-761 1225 chr3R 20156707 20156716 chr3R 20165862 20165886 roo 4 9163 3.5 4.5 4.0 0.8 9179 chr3R 20156707 intergenic not near genes chr3R 20161296 intergenic not near genes chr3R 20165886 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-761 1226 chr3R 20197128 20197150 chr3R 20197204 20197226 8 76 2.0 2.5 2.2 2.5 98 chr3R 20197128 intergenic not near genes chr3R 20197177 intergenic not near genes chr3R 20197226 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-761 1227 chr3R 20205417 20205437 chr3R 20205528 20205554 7 116 4.0 4.5 4.2 1.3 137 chr3R 20205417 intron Nlg4 + chr3R 20205486 intron Nlg4 + chr3R 20205554 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-761 1228 chr3R 20282290 20282309 chr3R 20282366 20282385 5 75 0.0 3.0 1.5 2.0 95 chr3R 20282290 intron cic + chr3R 20282338 intron cic + chr3R 20282385 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-761 1229 chr3R 20330999 20331032 chr3R 20331485 20331517 roo 7 486 1.5 2.5 2.0 2.3 518 chr3R 20330999 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331517 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-761 1230 chr3R 20391749 20391772 chr3R 20391845 20391868 6 94 2.0 3.5 2.8 1.6 119 chr3R 20391749 intron Gfrl - chr3R 20391808 intron Gfrl - chr3R 20391868 intron Gfrl - chr3R_6_20390001 chr3R_20390001 RAL-761 1231 chr3R 20489019 20489035 chr3R 20489095 20489111 6 76 1.5 2.0 1.8 2.1 92 chr3R 20489019 intergenic not near genes chr3R 20489065 intergenic not near genes chr3R 20489111 intergenic not near genes chr3R_6_20485001 chr3R_20485001 RAL-761 1232 chr3R 20543969 20543998 chr3R 20546103 20546132 14 2136 35.0 18.5 26.8 0.5 2163 chr3R 20543969 intron Stat92E - chr3R 20545050 intron Stat92E - chr3R 20546132 intron Stat92E - chr3R_14_20545001 chr3R_20545001 RAL-761 1233 chr3R 20594486 20594511 chr3R 20594576 20594601 7 90 0.0 0.5 0.2 5.8 115 chr3R 20594486 intron bon + chr3R 20594544 intron bon + chr3R 20594601 intron bon + chr3R_7_20590001 chr3R_20590001 RAL-761 1234 chr3R 20703483 20703513 chr3R 20703876 20703907 4 394 0.5 3.0 1.8 1.4 424 chr3R 20703483 intron Oamb - chr3R 20703695 intron Oamb - chr3R 20703907 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-761 1235 chr3R 20750355 20750372 chr3R 20750437 20750446 5 79 5.0 2.0 3.5 1.1 91 chr3R 20750355 intron CG42322 + chr3R 20750400 intron CG42322 + chr3R 20750446 intron CG42322 + chr3R_5_20750001 chr3R_20750001 RAL-761 1236 chr3R 20771705 20771725 chr3R 20771786 20771806 11 80 0.0 2.5 1.2 5.0 101 chr3R 20771705 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771806 intron,exon Syp +,Takl1 - chr3R_11_20770001 chr3R_20770001 RAL-761 1237 chr3R 20787446 20787451 chr3R 20787537 20787542 4 90 4.0 2.5 3.2 1.0 96 chr3R 20787446 intron Syp + chr3R 20787494 intron Syp + chr3R 20787542 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-761 1238 chr3R 20844534 20844549 chr3R 20844624 20844632 5 92 5.0 2.0 3.5 1.1 98 chr3R 20844534 exon CG15695 + chr3R 20844583 exon CG15695 + chr3R 20844632 3` UTR CG15695 + chr3R_5_20840001 chr3R_20840001 RAL-761 1239 chr3R 20867800 20867825 chr3R 20868994 20869020 8 1194 27.5 12.5 20.0 0.4 1220 chr3R 20867800 intergenic not near genes chr3R 20868410 intergenic not near genes chr3R 20869020 intergenic not near genes chr3R_8_20865001 chr3R_20865001 RAL-761 1240 chr3R 20870249 20870284 chr3R 20870334 20870369 17 83 2.5 2.5 2.5 4.9 120 chr3R 20870249 intergenic not near genes chr3R 20870309 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_17_20870001 chr3R_20870001 RAL-761 1241 chr3R 21141680 21141706 chr3R 21150156 21150170 Tirant 8 8467 4.0 4.5 4.2 1.5 8490 chr3R 21141680 intron SNF4Agamma + chr3R 21145925 intron SNF4Agamma + chr3R 21150170 intron SNF4Agamma + chr3R_8_21145001 chr3R_21145001 RAL-761 1242 chr3R 21154574 21154582 chr3R 21154789 21154792 4 214 3.5 2.5 3.0 1.0 218 chr3R 21154574 intron SNF4Agamma + chr3R 21154683 intron SNF4Agamma + chr3R 21154792 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-761 1243 chr3R 21240450 21240479 chr3R 21240536 21240571 5 91 2.5 2.0 2.2 1.6 121 chr3R 21240450 intergenic not near genes chr3R 21240510 intergenic not near genes chr3R 21240571 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-761 1244 chr3R 21518842 21518852 chr3R 21518953 21518963 4 111 2.0 3.5 2.8 1.1 121 chr3R 21518842 intergenic not near genes chr3R 21518902 intergenic not near genes chr3R 21518963 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-761 1245 chr3R 21519986 21520138 chr3R 21520087 21520232 7 98 2.0 2.0 2.0 2.3 246 chr3R 21519986 intergenic not near genes chr3R 21520109 intergenic not near genes chr3R 21520232 intergenic not near genes chr3R_7_21520001 chr3R_21520001 RAL-761 1246 chr3R 21640102 21640119 chr3R 21640186 21640206 7 83 2.0 3.0 2.5 2.0 104 chr3R 21640102 intron E2f - chr3R 21640154 intron E2f - chr3R 21640206 intron E2f - chr3R_7_21640001 chr3R_21640001 RAL-761 1247 chr3R 21741161 21741181 chr3R 21741254 21741263 6 89 2.0 6.5 4.2 1.2 102 chr3R 21741161 intron CG5849 + chr3R 21741212 intron CG5849 + chr3R 21741263 intron CG5849 + chr3R_6_21740001 chr3R_21740001 RAL-761 1248 chr3R 21761141 21761152 chr3R 21768509 21768542 mdg1 6 7384 2.5 4.5 3.5 1.3 7401 chr3R 21761141 exon CG42335 + chr3R 21764842 intron CG42335 + chr3R 21768542 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-761 1249 chr3R 21907534 21907534 chr3R 28831801 28831802 9 6924268 22.0 17.5 19.8 0.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_9_25365001 chr3R_25365001 RAL-761 1250 chr3R 21907535 21907535 chr3R 28831801 28831802 11 6924267 22.0 17.5 19.8 0.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-761 1251 chr3R 21907536 21907536 chr3R 28831801 28831802 18 6924266 22.0 17.5 19.8 0.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-761 1252 chr3R 21918998 21919017 chr3R 21919078 21919097 4 80 0.0 0.5 0.2 3.3 99 chr3R 21918998 intergenic not near genes chr3R 21919048 intergenic not near genes chr3R 21919097 intergenic not near genes chr3R_4_21915001 chr3R_21915001 RAL-761 1253 chr3R 21983141 21983167 chr3R 21983217 21983247 6 80 3.5 4.0 3.8 1.2 106 chr3R 21983141 intron Eip93F + chr3R 21983194 intron Eip93F + chr3R 21983247 intron Eip93F + chr3R_6_21980001 chr3R_21980001 RAL-761 1254 chr3R 22153580 22153599 chr3R 22153660 22153678 5 80 3.0 1.5 2.2 1.6 98 chr3R 22153580 intron SKIP + chr3R 22153629 intron SKIP + chr3R 22153678 intron SKIP + chr3R_5_22150001 chr3R_22150001 RAL-761 1255 chr3R 22428582 22428607 chr3R 22428652 22428683 9 73 3.5 2.5 3.0 2.2 101 chr3R 22428582 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-761 1256 chr3R 22450553 22450567 chr3R 22453188 22453207 NOF 6 2638 4.0 6.5 5.2 1.0 2654 chr3R 22450553 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453207 intron CG34376 + chr3R_6_22450001 chr3R_22450001 RAL-761 1257 chr3R 22507789 22507818 chr3R 22507870 22507902 12 82 4.0 2.5 3.2 2.9 113 chr3R 22507789 intron Octbeta1R + chr3R 22507846 intron Octbeta1R + chr3R 22507902 intron Octbeta1R + chr3R_12_22505001 chr3R_22505001 RAL-761 1258 chr3R 22769089 22769120 chr3R 22769166 22769196 8 76 3.5 1.5 2.5 2.3 107 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769142 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769196 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-761 1259 chr3R 22797757 22797936 chr3R 22797843 22798032 22 92 0.5 0.0 0.2 18.3 275 chr3R 22797757 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_22_22795001 chr3R_22795001 RAL-761 1260 chr3R 22804667 22804700 chr3R 22804745 22804778 11 77 1.0 2.0 1.5 4.4 111 chr3R 22804667 intron CG7031 + chr3R 22804722 intron CG7031 + chr3R 22804778 exon CG7031 + chr3R_11_22800001 chr3R_22800001 RAL-761 1261 chr3R 22835823 22835843 chr3R 22835899 22835925 9 81 5.5 2.5 4.0 1.8 102 chr3R 22835823 intergenic not near genes chr3R 22835874 intergenic not near genes chr3R 22835925 intergenic not near genes chr3R_9_22835001 chr3R_22835001 RAL-761 1262 chr3R 22847158 22847191 chr3R 22847448 22847481 9 289 2.0 2.0 2.0 3.0 323 chr3R 22847158 intergenic not near genes chr3R 22847320 intergenic not near genes chr3R 22847481 intergenic not near genes chr3R_9_22845001 chr3R_22845001 RAL-761 1263 chr3R 22880941 22880946 chr3R 22881079 22881083 4 138 3.0 1.5 2.2 1.2 142 chr3R 22880941 intergenic not near genes chr3R 22881012 intergenic not near genes chr3R 22881083 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-761 1264 chr3R 23057182 23057198 chr3R 23057265 23057286 5 86 3.0 6.0 4.5 0.9 104 chr3R 23057182 intron CG17119 - chr3R 23057234 intron CG17119 - chr3R 23057286 intron CG17119 - chr3R_5_23055001 chr3R_23055001 RAL-761 1265 chr3R 23064181 23064193 chr3R 23064284 23064302 5 106 6.0 2.5 4.2 1.0 121 chr3R 23064181 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064302 exon CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-761 1266 chr3R 23064881 23064896 chr3R 23064972 23064987 5 91 0.5 2.0 1.2 2.3 106 chr3R 23064881 intron CG17111 - chr3R 23064934 intron CG17111 - chr3R 23064987 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-761 1267 chr3R 23073659 23073686 chr3R 23073743 23073770 7 84 2.0 3.0 2.5 2.0 111 chr3R 23073659 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073770 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-761 1268 chr3R 23090411 23090437 chr3R 23090494 23090520 10 81 7.0 7.0 7.0 1.2 109 chr3R 23090411 intron CG13830 - chr3R 23090466 intron CG13830 - chr3R 23090520 intron CG13830 - chr3R_10_23090001 chr3R_23090001 RAL-761 1269 chr3R 23260959 23260989 chr3R 23261035 23261071 7 81 2.0 0.0 1.0 3.5 112 chr3R 23260959 3` UTR orb - chr3R 23261015 3` UTR orb - chr3R 23261071 3` UTR orb - chr3R_7_23260001 chr3R_23260001 RAL-761 1270 chr3R 23291272 23291283 chr3R 23291336 23291355 4 75 5.0 3.0 4.0 0.8 83 chr3R 23291272 3` UTR pnt - chr3R 23291314 3` UTR pnt - chr3R 23291355 3` UTR pnt - chr3R_4_23290001 chr3R_23290001 RAL-761 1271 chr3R 23314063 23314069 chr3R 23314140 23314141 4 76 4.5 2.0 3.2 1.0 78 chr3R 23314063 intron pnt - chr3R 23314102 intron pnt - chr3R 23314141 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-761 1272 chr3R 23335436 23335458 chr3R 23335514 23335535 6 78 3.5 4.0 3.8 1.2 99 chr3R 23335436 intron pnt - chr3R 23335486 intron pnt - chr3R 23335535 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-761 1273 chr3R 23453686 23453702 chr3R 23453760 23453781 5 78 2.5 2.5 2.5 1.4 95 chr3R 23453686 intron CG4374 - chr3R 23453734 intron CG4374 - chr3R 23453781 intron CG4374 - chr3R_5_23450001 chr3R_23450001 RAL-761 1274 chr3R 23556306 23556340 chr3R 23556409 23556443 10 102 3.0 3.0 3.0 2.5 137 chr3R 23556306 5` UTR CG10164 - chr3R 23556374 5` UTR CG10164 - chr3R 23556443 5` UTR CG10164 - chr3R_10_23555001 chr3R_23555001 RAL-761 1275 chr3R 23558402 23558427 chr3R 23560183 23560208 Bari1 6 1781 1.0 2.0 1.5 2.4 1806 chr3R 23558402 intron beat-IV + chr3R 23559305 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-761 1276 chr3R 23639927 23639954 chr3R 23640233 23640260 6 302 4.0 1.5 2.8 1.6 333 chr3R 23639927 intron CG31145 - chr3R 23640094 intron CG31145 - chr3R 23640260 intron CG31145 - chr3R_6_23640001 chr3R_23640001 RAL-761 1277 chr3R 23662853 23662870 chr3R 23662967 23662995 10 122 3.0 4.0 3.5 2.2 142 chr3R 23662853 intron CG31145 - chr3R 23662924 intron CG31145 - chr3R 23662995 intron CG31145 - chr3R_10_23660001 chr3R_23660001 RAL-761 1278 chr3R 23684722 23684728 chr3R 23685183 23685209 roo 5 467 1.5 5.5 3.5 1.1 487 chr3R 23684722 intron CG18754 + chr3R 23684966 intron CG18754 + chr3R 23685209 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-761 1279 chr3R 23784899 23785187 chr3R 23784974 23785266 14 74 6.5 3.0 4.8 2.4 367 chr3R 23784899 intron mbc + chr3R 23785082 intron mbc + chr3R 23785266 intron mbc + chr3R_14_23785001 chr3R_23785001 RAL-761 1280 chr3R 23835406 23835423 chr3R 23844556 23844570 roo 5 9149 4.0 1.5 2.8 1.3 9164 chr3R 23835406 intron CG34355 + chr3R 23839988 intron CG34355 + chr3R 23844570 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-761 1281 chr3R 23888083 23888116 chr3R 23888169 23888196 10 81 0.5 1.5 1.0 5.0 113 chr3R 23888083 intron Pli - chr3R 23888140 intron Pli - chr3R 23888196 intron Pli - chr3R_10_23885001 chr3R_23885001 RAL-761 1282 chr3R 23944911 23944934 chr3R 23944996 23945012 9 82 0.5 2.5 1.5 3.6 101 chr3R 23944911 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945012 intron CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-761 1283 chr3R 24072093 24072115 chr3R 24072522 24072548 jockey 9 432 2.0 7.5 4.8 1.6 455 chr3R 24072093 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072548 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-761 1284 chr3R 24207217 24207246 chr3R 24212291 24212312 flea 6 5074 6.0 5.5 5.8 0.9 5095 chr3R 24207217 intron twin - chr3R 24209764 intron twin - chr3R 24212312 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-761 1285 chr3R 24291112 24291140 chr3R 24291202 24291230 6 83 4.0 3.0 3.5 1.3 118 chr3R 24291112 exon CG6364 + chr3R 24291171 intron CG6364 + chr3R 24291230 intron CG6364 + chr3R_6_24290001 chr3R_24290001 RAL-761 1286 chr3R 24527819 24527833 chr3R 24527910 24527924 5 91 1.0 5.0 3.0 1.2 105 chr3R 24527819 intergenic CG6607 +,CG13618 + chr3R 24527872 intergenic CG6607 +,CG13618 + chr3R 24527924 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-761 1287 chr3R 24670165 24670172 chr3R 24670248 24670256 4 83 2.0 0.5 1.2 1.8 91 chr3R 24670165 intron slo + chr3R 24670210 intron slo + chr3R 24670256 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-761 1288 chr3R 24842104 24842132 chr3R 24842190 24842218 9 85 3.0 3.5 3.2 2.1 114 chr3R 24842104 5` UTR Esp + chr3R 24842161 5` UTR Esp + chr3R 24842218 5` UTR Esp + chr3R_9_24840001 chr3R_24840001 RAL-761 1289 chr3R 24845990 24846025 chr3R 24846080 24846115 9 89 3.0 4.5 3.8 1.9 125 chr3R 24845990 intron Esp + chr3R 24846052 intron Esp + chr3R 24846115 intron Esp + chr3R_9_24845001 chr3R_24845001 RAL-761 1290 chr3R 24927128 24927153 chr3R 24931919 24931944 Doc 7 4791 3.5 3.0 3.2 1.7 4816 chr3R 24927128 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931944 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-761 1291 chr3R 25004914 25004921 chr3R 25004991 25005004 4 81 0.0 4.0 2.0 1.3 90 chr3R 25004914 intron tnc + chr3R 25004959 intron tnc + chr3R 25005004 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-761 1292 chr3R 25209595 25209629 chr3R 25209677 25209711 13 82 3.5 2.5 3.0 3.2 116 chr3R 25209595 intron CG13654 + chr3R 25209653 intron CG13654 + chr3R 25209711 intron CG13654 + chr3R_13_25205001 chr3R_25205001 RAL-761 1293 chr3R 25250100 25250128 chr3R 25250185 25250202 12 84 3.0 2.0 2.5 3.4 102 chr3R 25250100 intron Nup358 + chr3R 25250151 intron Nup358 + chr3R 25250202 intron Nup358 + chr3R_12_25250001 chr3R_25250001 RAL-761 1294 chr3R 25268041 25268064 chr3R 25272650 25272656 4 4595 12.5 15.5 14.0 0.3 4615 chr3R 25268041 intron CR45214 - chr3R 25270348 exon,5` UTR CG11889 +,CG11891 + chr3R 25272656 3` UTR,exon CG11889 +,CG11891 + chr3R_4_25270001 chr3R_25270001 RAL-761 1295 chr3R 25368489 25368504 chr3R 25368601 25368622 4 109 3.5 0.0 1.8 1.4 133 chr3R 25368489 intron Fur1 - chr3R 25368556 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-761 1296 chr3R 25447112 25447142 chr3R 25447189 25447219 6 77 0.5 1.5 1.0 3.0 107 chr3R 25447112 intron Fur1 - chr3R 25447166 intron Fur1 - chr3R 25447219 intron Fur1 - chr3R_6_25445001 chr3R_25445001 RAL-761 1297 chr3R 25512398 25512423 chr3R 25512476 25512493 8 75 1.0 1.0 1.0 4.0 95 chr3R 25512398 intergenic not near genes chr3R 25512446 intergenic not near genes chr3R 25512493 intergenic not near genes chr3R_8_25510001 chr3R_25510001 RAL-761 1298 chr3R 25547508 25547521 chr3R 25547684 25547697 4 176 22.0 16.5 19.2 0.2 189 chr3R 25547508 intron msi + chr3R 25547602 intron msi + chr3R 25547697 intron msi + chr3R_4_25545001 chr3R_25545001 RAL-761 1299 chr3R 25612910 25612942 chr3R 25612986 25613019 16 76 3.0 6.5 4.8 2.8 109 chr3R 25612910 intron Npl4 - chr3R 25612964 intron Npl4 - chr3R 25613019 intron Npl4 - chr3R_16_25610001 chr3R_25610001 RAL-761 1300 chr3R 25832693 25832709 chr3R 25841875 25841890 roo 6 9178 2.5 5.0 3.8 1.2 9197 chr3R 25832693 exon alpha4GT2 + chr3R 25837292 intron alpha4GT2 + chr3R 25841890 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-761 1301 chr3R 25843641 25843660 chr3R 25843771 25843790 6 130 0.0 1.5 0.8 3.3 149 chr3R 25843641 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843790 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-761 1302 chr3R 25861829 25861845 chr3R 25861906 25861922 5 77 2.0 1.5 1.8 1.8 93 chr3R 25861829 intron CG5890 + chr3R 25861876 intron CG5890 + chr3R 25861922 intron CG5890 + chr3R_5_25860001 chr3R_25860001 RAL-761 1303 chr3R 25962059 25962082 chr3R 25962152 25962178 9 96 1.0 5.0 3.0 2.2 119 chr3R 25962059 intron boss + chr3R 25962118 intron boss + chr3R 25962178 intron boss + chr3R_9_25960001 chr3R_25960001 RAL-761 1304 chr3R 26144709 26144726 chr3R 26144781 26144804 9 75 2.5 3.0 2.8 2.4 95 chr3R 26144709 intergenic not near genes chr3R 26144756 intergenic not near genes chr3R 26144804 intergenic not near genes chr3R_9_26140001 chr3R_26140001 RAL-761 1305 chr3R 26229230 26229255 chr3R 26229310 26229341 5 82 6.0 2.0 4.0 1.0 111 chr3R 26229230 intergenic not near genes chr3R 26229286 intergenic not near genes chr3R 26229341 intergenic not near genes chr3R_5_26225001 chr3R_26225001 RAL-761 1306 chr3R 26256020 26256043 chr3R 26256087 26256124 4 76 2.0 4.0 3.0 1.0 104 chr3R 26256020 intron Ald - chr3R 26256072 intron Ald - chr3R 26256124 intron Ald - chr3R_4_26255001 chr3R_26255001 RAL-761 1307 chr3R 26292118 26292138 chr3R 26292198 26292218 8 80 1.5 3.0 2.2 2.5 100 chr3R 26292118 intergenic not near genes chr3R 26292168 intergenic not near genes chr3R 26292218 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-761 1308 chr3R 26370340 26370358 chr3R 26370423 26370436 5 82 0.0 2.5 1.2 2.3 96 chr3R 26370340 intergenic not near genes chr3R 26370388 intergenic not near genes chr3R 26370436 intergenic not near genes chr3R_5_26370001 chr3R_26370001 RAL-761 1309 chr3R 26542064 26542075 chr3R 26542141 26542163 6 86 3.5 6.5 5.0 1.0 99 chr3R 26542064 intron scrib + chr3R 26542114 intron scrib + chr3R 26542163 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-761 1310 chr3R 26558346 26558357 chr3R 26565657 26565666 Stalker4 5 7311 3.0 2.5 2.8 1.3 7320 chr3R 26558346 intron scrib + chr3R 26562006 intron scrib + chr3R 26565666 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-761 1311 chr3R 26568919 26568928 chr3R 26569039 26569047 4 120 0.0 8.0 4.0 0.8 128 chr3R 26568919 intron scrib + chr3R 26568983 intron scrib + chr3R 26569047 intron scrib + chr3R_4_26565001 chr3R_26565001 RAL-761 1312 chr3R 26609415 26609448 chr3R 26609601 26609635 5 184 2.5 4.0 3.2 1.2 220 chr3R 26609415 intergenic not near genes chr3R 26609525 intergenic not near genes chr3R 26609635 intergenic not near genes chr3R_5_26605001 chr3R_26605001 RAL-761 1313 chr3R 26642732 26642761 chr3R 26643125 26643155 jockey 6 391 3.0 1.5 2.2 1.9 423 chr3R 26642732 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-761 1314 chr3R 26710829 26710856 chr3R 26710912 26710940 8 83 3.5 4.0 3.8 1.7 111 chr3R 26710829 intron amon - chr3R 26710884 intron amon - chr3R 26710940 intron amon - chr3R_8_26710001 chr3R_26710001 RAL-761 1315 chr3R 26740308 26740321 chr3R 26740373 26740397 5 73 0.0 3.0 1.5 2.0 89 chr3R 26740308 intergenic not near genes chr3R 26740352 intergenic not near genes chr3R 26740397 intergenic not near genes chr3R_5_26740001 chr3R_26740001 RAL-761 1316 chr3R 26770241 26770260 chr3R 26770318 26770337 7 77 2.5 2.0 2.2 2.2 96 chr3R 26770241 intergenic CR45563 + chr3R 26770289 intergenic CR45563 + chr3R 26770337 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-761 1317 chr3R 26881467 26881487 chr3R 26881534 26881550 8 74 4.5 5.0 4.8 1.4 83 chr3R 26881467 intergenic T48 +,ro - chr3R 26881508 intergenic T48 +,ro - chr3R 26881550 intergenic T48 +,ro - chr3R_8_26880001 chr3R_26880001 RAL-761 1318 chr3R 26902697 26902724 chr3R 26903044 26903066 11 348 3.5 2.0 2.8 2.9 369 chr3R 26902697 intron T48 + chr3R 26902882 intron T48 + chr3R 26903066 intron T48 + chr3R_11_26900001 chr3R_26900001 RAL-761 1319 chr3R 27028722 27028749 chr3R 27028801 27028828 6 79 3.5 2.5 3.0 1.5 106 chr3R 27028722 intron RYa-R + chr3R 27028775 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-761 1320 chr3R 27092716 27092744 chr3R 27092894 27092923 12 178 4.5 0.5 2.5 3.4 207 chr3R 27092716 intergenic CG14258 + chr3R 27092820 intergenic CG14258 + chr3R 27092923 intergenic CG14258 + chr3R_12_27090001 chr3R_27090001 RAL-761 1321 chr3R 27140514 27140544 chr3R 27148123 27148154 412 16 7608 6.5 3.5 5.0 2.7 7640 chr3R 27140514 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148154 intron CG6051 - chr3R_16_27140001 chr3R_27140001 RAL-761 1322 chr3R 27206619 27206646 chr3R 27206786 27206813 9 167 2.5 0.5 1.5 3.6 194 chr3R 27206619 intergenic not near genes chr3R 27206716 intergenic not near genes chr3R 27206813 intergenic not near genes chr3R_9_27205001 chr3R_27205001 RAL-761 1323 chr3R 27335955 27335965 chr3R 27336036 27336037 4 78 0.5 0.0 0.2 3.3 82 chr3R 27335955 intergenic not near genes chr3R 27335996 intergenic not near genes chr3R 27336037 intergenic not near genes chr3R_4_27335001 chr3R_27335001 RAL-761 1324 chr3R 27342800 27342825 chr3R 27351381 27351406 Tirant 9 8580 2.5 5.0 3.8 1.9 8606 chr3R 27342800 intron CG42534 + chr3R 27347103 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-761 1325 chr3R 27470049 27470066 chr3R 27470703 27470728 7 660 6.0 3.0 4.5 1.3 679 chr3R 27470049 intergenic not near genes chr3R 27470388 intergenic not near genes chr3R 27470728 intergenic not near genes chr3R_7_27470001 chr3R_27470001 RAL-761 1326 chr3R 27541947 27541958 chr3R 27542028 27542036 8 80 14.0 5.0 9.5 0.8 89 chr3R 27541947 intergenic not near genes chr3R 27541992 intergenic not near genes chr3R 27542036 intergenic Gr98b + chr3R_8_27540001 chr3R_27540001 RAL-761 1327 chr3R 27623362 27623391 chr3R 27623446 27623456 8 78 5.0 1.5 3.2 1.9 94 chr3R 27623362 intron,3` UTR Tusp +,CG5612 - chr3R 27623409 intron,3` UTR Tusp +,CG5612 - chr3R 27623456 intron,3` UTR Tusp +,CG5612 - chr3R_8_27620001 chr3R_27620001 RAL-761 1328 chr3R 27622432 27622436 chr3R 27624755 27624760 4 2324 17.0 28.5 22.8 0.2 2328 chr3R 27622432 intron Tusp + chr3R 27623596 intron,exon Tusp +,CG5612 - chr3R 27624760 intron,intron Tusp +,CG5612 - chr3R_4_27620001 chr3R_27620001 RAL-761 1329 chr3R 27622425 27622456 chr3R 27624761 27624781 11 2326 18.5 27.5 23.0 0.5 2356 chr3R 27622425 intron Tusp + chr3R 27623603 intron,exon Tusp +,CG5612 - chr3R 27624781 intron,intron Tusp +,CG5612 - chr3R_11_27620001 chr3R_27620001 RAL-761 1330 chr3R 27627086 27627119 chr3R 27627188 27627220 5 98 2.5 1.0 1.8 1.8 134 chr3R 27627086 intron Tusp + chr3R 27627153 intron Tusp + chr3R 27627220 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-761 1331 chr3R 27683524 27683548 chr3R 27683665 27683695 5 137 3.5 5.0 4.2 1.0 171 chr3R 27683524 intergenic not near genes chr3R 27683610 intergenic not near genes chr3R 27683695 intergenic not near genes chr3R_5_27680001 chr3R_27680001 RAL-761 1332 chr3R 27705356 27705391 chr3R 27705436 27705441 5 71 2.5 3.0 2.8 1.3 85 chr3R 27705356 exon CG12428 - chr3R 27705398 intron CG12428 - chr3R 27705441 intron CG12428 - chr3R_5_27705001 chr3R_27705001 RAL-761 1333 chr3R 27725567 27725595 chr3R 27731008 27731036 I-element 6 5442 3.0 2.0 2.5 1.7 5469 chr3R 27725567 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731036 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-761 1334 chr3R 27789088 27789116 chr3R 27789158 27789193 9 75 1.5 3.5 2.5 2.6 105 chr3R 27789088 exon CG34353 - chr3R 27789140 intron CG34353 - chr3R 27789193 intron CG34353 - chr3R_9_27785001 chr3R_27785001 RAL-761 1335 chr3R 27829901 27829923 chr3R 27829980 27829988 5 76 4.0 0.0 2.0 1.7 87 chr3R 27829901 intron CG34353 - chr3R 27829944 intron CG34353 - chr3R 27829988 intron CG34353 - chr3R_5_27825001 chr3R_27825001 RAL-761 1336 chr3R 27856760 27856790 chr3R 27858242 27858273 hopper2 15 1482 3.5 3.5 3.5 3.3 1513 chr3R 27856760 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858273 intron CG34353 - chr3R_15_27855001 chr3R_27855001 RAL-761 1337 chr3R 27862960 27862980 chr3R 27868259 27868285 Transpac 6 5304 5.0 2.5 3.8 1.2 5325 chr3R 27862960 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-761 1338 chr3R 27875702 27875728 chr3R 27882757 27882783 297 9 7055 3.5 1.5 2.5 2.6 7081 chr3R 27875702 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-761 1339 chr3R 27970844 27970847 chr3R 27970928 27970935 4 88 2.5 1.5 2.0 1.3 91 chr3R 27970844 intron betaTub97EF - chr3R 27970890 intron betaTub97EF - chr3R 27970935 intron betaTub97EF - chr3R_4_27970001 chr3R_27970001 RAL-761 1340 chr3R 28017952 28017970 chr3R 28018037 28018045 4 80 4.0 2.0 3.0 1.0 93 chr3R 28017952 intergenic not near genes chr3R 28017998 intergenic not near genes chr3R 28018045 intergenic not near genes chr3R_4_28015001 chr3R_28015001 RAL-761 1341 chr3R 28068492 28068523 chr3R 28073934 28073965 I-element 7 5441 2.0 2.5 2.2 2.2 5473 chr3R 28068492 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073965 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-761 1342 chr3R 28231019 28231049 chr3R 28231097 28231127 15 78 4.0 4.5 4.2 2.9 108 chr3R 28231019 intron CG34354 + chr3R 28231073 intron CG34354 + chr3R 28231127 intron CG34354 + chr3R_15_28230001 chr3R_28230001 RAL-761 1343 chr3R 28253340 28253373 chr3R 28255845 28255860 jockey 13 2506 1.0 6.0 3.5 2.9 2520 chr3R 28253340 intergenic not near genes chr3R 28254600 intergenic not near genes chr3R 28255860 intergenic not near genes chr3R_13_28250001 chr3R_28250001 RAL-761 1344 chr3R 28282990 28283017 chr3R 28283619 28283645 8 628 4.5 2.0 3.2 1.9 655 chr3R 28282990 exon CG34436 + chr3R 28283318 exon CG34436 + chr3R 28283645 intergenic CG34437 +,CG34436 + chr3R_8_28280001 chr3R_28280001 RAL-761 1345 chr3R 28302104 28302136 chr3R 28302543 28302574 jockey 5 438 2.0 2.5 2.2 1.6 470 chr3R 28302104 intergenic not near genes chr3R 28302339 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-761 1346 chr3R 28345647 28345656 chr3R 28345723 28345732 6 75 5.0 0.0 2.5 1.7 85 chr3R 28345647 intergenic Moca-cyp + chr3R 28345690 intergenic not near genes chr3R 28345732 intergenic not near genes chr3R_6_28345001 chr3R_28345001 RAL-761 1347 chr3R 28352512 28352537 chr3R 28352852 28352877 10 337 3.5 6.0 4.8 1.7 365 chr3R 28352512 exon Or98b + chr3R 28352694 exon Or98b + chr3R 28352877 exon Or98b + chr3R_10_28350001 chr3R_28350001 RAL-761 1348 chr3R 28393711 28393731 chr3R 28393811 28393831 8 100 3.5 1.5 2.5 2.3 120 chr3R 28393711 intergenic not near genes chr3R 28393771 intergenic not near genes chr3R 28393831 intergenic not near genes chr3R_8_28390001 chr3R_28390001 RAL-761 1349 chr3R 28406601 28406611 chr3R 28406878 28406888 4 277 3.0 2.0 2.5 1.1 287 chr3R 28406601 intergenic not near genes chr3R 28406744 intergenic not near genes chr3R 28406888 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-761 1350 chr3R 28420892 28420907 chr3R 28421008 28421023 5 116 1.5 1.0 1.2 2.3 131 chr3R 28420892 intron beat-VI + chr3R 28420958 intron beat-VI + chr3R 28421023 intron beat-VI + chr3R_5_28420001 chr3R_28420001 RAL-761 1351 chr3R 28441994 28442017 chr3R 28442089 28442112 5 93 17.0 4.0 10.5 0.4 118 chr3R 28441994 intron beat-VI + chr3R 28442053 intron beat-VI + chr3R 28442112 intron beat-VI + chr3R_5_28440001 chr3R_28440001 RAL-761 1352 chr3R 28478431 28478449 chr3R 28478497 28478502 8 68 2.5 2.0 2.2 2.5 71 chr3R 28478431 intergenic not near genes chr3R 28478466 intergenic not near genes chr3R 28478502 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-761 1353 chr3R 28479150 28479167 chr3R 28479231 28479250 6 83 0.5 2.5 1.5 2.4 100 chr3R 28479150 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479250 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-761 1354 chr3R 28480329 28480331 chr3R 28480410 28480412 4 81 2.0 6.5 4.2 0.8 83 chr3R 28480329 intergenic not near genes chr3R 28480370 intergenic not near genes chr3R 28480412 intergenic not near genes chr3R_4_28480001 chr3R_28480001 RAL-761 1355 chr3R 28484353 28484369 chr3R 28486270 28486291 44 1919 33.5 52.5 43.0 1.0 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_44_28485001 chr3R_28485001 RAL-761 1356 chr3R 28686734 28686758 chr3R 28686811 28686836 9 81 3.0 2.0 2.5 2.6 102 chr3R 28686734 intron CG9990 + chr3R 28686785 intron CG9990 + chr3R 28686836 intron CG9990 + chr3R_9_28685001 chr3R_28685001 RAL-761 1357 chr3R 28763900 28763922 chr3R 28771343 28771365 Stalker4 6 7443 0.0 0.5 0.2 5.0 7465 chr3R 28763900 intergenic not near genes chr3R 28767632 intergenic not near genes chr3R 28771365 intergenic not near genes chr3R_6_28765001 chr3R_28765001 RAL-761 1358 chr3R 28792878 28792902 chr3R 28797972 28797997 jockey 4 5093 1.5 6.0 3.8 0.8 5119 chr3R 28792878 intergenic not near genes chr3R 28795438 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-761 1359 chr3R 21907534 21907534 chr3R 28831801 28831804 56 6924266 22.0 17.5 19.8 2.7 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_56_25365001 chr3R_25365001 RAL-761 1360 chr3R 28989912 28989933 chr3R 28990084 28990105 6 174 5.0 4.5 4.8 1.0 193 chr3R 28989912 intergenic not near genes chr3R 28990008 intergenic not near genes chr3R 28990105 intergenic not near genes chr3R_6_28990001 chr3R_28990001 RAL-761 1361 chr3R 29066252 29066272 chr3R 29066483 29066503 5 231 2.0 5.5 3.8 1.0 251 chr3R 29066252 intron CG11873 + chr3R 29066378 intron CG11873 + chr3R 29066503 intron CG11873 + chr3R_5_29065001 chr3R_29065001 RAL-761 1362 chr3R 29237269 29237283 chr3R 29239276 29239291 9 2015 15.5 3.5 9.5 0.9 2022 chr3R 29237269 exon CG11951 - chr3R 29238280 intron CG11951 - chr3R 29239291 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-761 1363 chr3R 29376235 29376260 chr3R 29376312 29376337 4 77 2.0 3.5 2.8 1.1 102 chr3R 29376235 intergenic not near genes chr3R 29376286 intergenic not near genes chr3R 29376337 intergenic not near genes chr3R_4_29375001 chr3R_29375001 RAL-761 1364 chr3R 29402983 29403007 chr3R 29403078 29403102 6 94 1.0 0.5 0.8 3.3 119 chr3R 29402983 intron Ptp99A + chr3R 29403042 intron Ptp99A + chr3R 29403102 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-761 1365 chr3R 29406613 29406644 chr3R 29407898 29407930 jockey 11 1282 1.5 3.0 2.2 3.4 1317 chr3R 29406613 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407930 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-761 1366 chr3R 29472027 29472037 chr3R 29472105 29472130 4 89 1.5 4.0 2.8 1.1 103 chr3R 29472027 intron Ptp99A + chr3R 29472078 intron Ptp99A + chr3R 29472130 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-761 1367 chr3R 29538060 29538168 chr3R 29538137 29538232 5 76 0.0 0.0 0.0 5.0 172 chr3R 29538060 intergenic not near genes chr3R 29538146 intergenic not near genes chr3R 29538232 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-761 1368 chr3R 29606942 29606967 chr3R 29607017 29607045 9 76 2.0 3.0 2.5 2.6 103 chr3R 29606942 intron alph + chr3R 29606994 intron alph + chr3R 29607045 intron alph + chr3R_9_29605001 chr3R_29605001 RAL-761 1369 chr3R 29645829 29645848 chr3R 29645910 29645929 9 81 3.0 4.0 3.5 2.0 100 chr3R 29645829 intron Dop1R2 - chr3R 29645879 intron Dop1R2 - chr3R 29645929 intron Dop1R2 - chr3R_9_29645001 chr3R_29645001 RAL-761 1370 chr3R 29717912 29717928 chr3R 29718049 29718065 5 137 7.5 2.0 4.8 0.9 153 chr3R 29717912 intergenic not near genes chr3R 29717988 intergenic not near genes chr3R 29718065 intergenic not near genes chr3R_5_29715001 chr3R_29715001 RAL-761 1371 chr3R 29738264 29738292 chr3R 29739731 29739759 hobo 10 1466 3.5 2.0 2.8 2.6 1495 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739759 5` UTR CG1969 + chr3R_10_29735001 chr3R_29735001 RAL-761 1372 chr3R 29760366 29760390 chr3R 29761567 29761591 pogo 6 1201 0.5 1.0 0.8 3.3 1225 chr3R 29760366 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761591 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-761 1373 chr3R 30032162 30032180 chr3R 30032239 30032254 8 78 3.0 2.5 2.8 2.1 92 chr3R 30032162 intron Axn + chr3R 30032208 intron Axn + chr3R 30032254 intron Axn + chr3R_8_30030001 chr3R_30030001 RAL-761 1374 chr3R 30084855 30084880 chr3R 30086322 30086347 hobo 15 1464 4.5 3.5 4.0 3.0 1492 chr3R 30084855 intron sima + chr3R 30085601 intron sima + chr3R 30086347 intron sima + chr3R_15_30085001 chr3R_30085001 RAL-761 1375 chr3R 30088623 30088639 chr3R 30088709 30088721 5 85 0.0 1.0 0.5 3.3 98 chr3R 30088623 intron sima + chr3R 30088672 intron sima + chr3R 30088721 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-761 1376 chr3R 30182754 30182784 chr3R 30182893 30182923 10 137 1.5 3.5 2.5 2.9 169 chr3R 30182754 intergenic not near genes chr3R 30182838 intergenic not near genes chr3R 30182923 intergenic not near genes chr3R_10_30180001 chr3R_30180001 RAL-761 1377 chr3R 30268425 30268448 chr3R 30268499 30268529 10 74 2.5 4.5 3.5 2.2 104 chr3R 30268425 intergenic not near genes chr3R 30268477 intergenic not near genes chr3R 30268529 intergenic not near genes chr3R_10_30265001 chr3R_30265001 RAL-761 1378 chr3R 30317330 30317358 chr3R 30324922 30324949 roo 6 7588 1.0 6.5 3.8 1.2 7619 chr3R 30317330 intron hdc + chr3R 30321140 intron hdc + chr3R 30324949 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-761 1379 chr3R 30332029 30332062 chr3R 30332108 30332141 14 77 3.5 3.0 3.2 3.3 112 chr3R 30332029 intron hdc + chr3R 30332085 intron hdc + chr3R 30332141 intron hdc + chr3R_14_30330001 chr3R_30330001 RAL-761 1380 chr3R 30396219 30396239 chr3R 30404484 30404501 roo 8 8265 4.0 4.5 4.2 1.5 8282 chr3R 30396219 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404501 5` UTR CR45570 + chr3R_8_30400001 chr3R_30400001 RAL-761 1381 chr3R 30458013 30458041 chr3R 30458093 30458121 8 80 2.5 3.0 2.8 2.1 108 chr3R 30458013 intron CG2224 - chr3R 30458067 intron CG2224 - chr3R 30458121 intron CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-761 1382 chr3R 30461503 30461522 chr3R 30461611 30461639 15 114 3.5 2.5 3.0 3.8 136 chr3R 30461503 intron CDase + chr3R 30461571 intron CDase + chr3R 30461639 intron CDase + chr3R_15_30460001 chr3R_30460001 RAL-761 1383 chr3R 30480478 30480512 chr3R 30482944 30482980 jockey 12 2466 2.0 7.5 4.8 2.1 2502 chr3R 30480478 intron PH4alphaEFB + chr3R 30481729 intron PH4alphaEFB + chr3R 30482980 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-761 1384 chr3R 30537628 30537649 chr3R 30537701 30537719 5 74 2.5 4.0 3.2 1.2 91 chr3R 30537628 intron tmod + chr3R 30537674 intron tmod + chr3R 30537719 intron tmod + chr3R_5_30535001 chr3R_30535001 RAL-761 1385 chr3R 30560376 30560382 chr3R 30560445 30560445 6 72 1.0 2.5 1.8 2.1 69 chr3R 30560376 intron tmod + chr3R 30560410 intron tmod + chr3R 30560445 intron tmod + chr3R_6_30560001 chr3R_30560001 RAL-761 1386 chr3R 30566745 30566761 chr3R 30566840 30566856 6 94 3.0 4.5 3.8 1.2 111 chr3R 30566745 intron tmod + chr3R 30566800 intron tmod + chr3R 30566856 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-761 1387 chr3R 30566767 30566773 chr3R 30566839 30566868 6 90 1.0 4.0 2.5 1.7 101 chr3R 30566767 intron tmod + chr3R 30566818 intron tmod + chr3R 30566868 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-761 1388 chr3R 30592505 30592539 chr3R 30592615 30592649 10 108 2.0 4.0 3.0 2.5 144 chr3R 30592505 intergenic CG2246 - chr3R 30592577 intergenic CG2246 - chr3R 30592649 intergenic CG2246 - chr3R_10_30590001 chr3R_30590001 RAL-761 1389 chr3R 30620928 30620942 chr3R 30621083 30621097 6 155 4.5 2.0 3.2 1.4 169 chr3R 30620928 intron CG44954 - chr3R 30621012 intron CG44954 - chr3R 30621097 intron CG44954 - chr3R_6_30620001 chr3R_30620001 RAL-761 1390 chr3R 30627608 30627639 chr3R 30627687 30627718 14 74 1.0 5.0 3.0 3.5 110 chr3R 30627608 exon CG2267 - chr3R 30627663 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_14_30625001 chr3R_30625001 RAL-761 1391 chr3R 30679519 30679552 chr3R 30686988 30687021 blood 5 7469 4.0 3.0 3.5 1.1 7502 chr3R 30679519 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-761 1392 chr3R 30690167 30690187 chr3R 30690251 30690258 10 81 2.5 6.0 4.2 1.9 91 chr3R 30690167 intergenic Spn100A + chr3R 30690212 intergenic Spn100A + chr3R 30690258 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-761 1393 chr3R 30700869 30700879 chr3R 30700991 30701002 5 122 1.0 1.5 1.2 2.3 133 chr3R 30700869 intergenic not near genes chr3R 30700936 intergenic not near genes chr3R 30701002 intergenic not near genes chr3R_5_30700001 chr3R_30700001 RAL-761 1394 chr3R 30791908 30791939 chr3R 30792024 30792055 14 114 1.0 3.5 2.2 4.4 147 chr3R 30791908 exon wts - chr3R 30791982 intron wts - chr3R 30792055 exon wts - chr3R_14_30790001 chr3R_30790001 RAL-761 1395 chr3R 30888923 30888935 chr3R 30893450 30893463 5 4527 25.5 19.5 22.5 0.2 4540 chr3R 30888923 exon Sap-r - chr3R 30891193 intergenic not near genes chr3R 30893463 intergenic not near genes chr3R_5_30890001 chr3R_30890001 RAL-761 1396 chr3R 31000236 31000259 chr3R 31000387 31000407 10 149 4.5 5.0 4.8 1.7 171 chr3R 31000236 intron 5-HT7 - chr3R 31000322 intron 5-HT7 - chr3R 31000407 intron 5-HT7 - chr3R_10_31000001 chr3R_31000001 RAL-761 1397 chr3R 31074248 31074260 chr3R 31081848 31081860 springer 5 7599 6.5 1.0 3.8 1.0 7612 chr3R 31074248 intron Sox100B + chr3R 31078054 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-761 1398 chr3R 31105217 31105239 chr3R 31105474 31105476 5 249 9.5 2.0 5.8 0.7 259 chr3R 31105217 intergenic not near genes chr3R 31105346 intergenic not near genes chr3R 31105476 intergenic not near genes chr3R_5_31105001 chr3R_31105001 RAL-761 1399 chr3R 31262865 31262870 chr3R 31262956 31262977 4 103 5.5 1.0 3.2 1.0 112 chr3R 31262865 exon CG18673 + chr3R 31262921 exon CG18673 + chr3R 31262977 intron CG18673 + chr3R_4_31260001 chr3R_31260001 RAL-761 1400 chr3R 31279373 31279403 chr3R 31285562 31285594 diver 8 6185 4.5 5.5 5.0 1.3 6221 chr3R 31279373 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-761 1401 chr3R 31413089 31413120 chr3R 31418289 31418311 copia 11 5198 2.0 0.0 1.0 5.5 5222 chr3R 31413089 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-761 1402 chr3R 31426883 31426912 chr3R 31426975 31427004 9 91 2.0 1.5 1.8 3.2 121 chr3R 31426883 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-761 1403 chr3R 31435366 31435390 chr3R 31435518 31435539 9 151 0.0 6.0 3.0 2.2 173 chr3R 31435366 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435539 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-761 1404 chr3R 31464223 31464257 chr3R 31464400 31464432 9 167 4.5 3.5 4.0 1.8 209 chr3R 31464223 intergenic CG11333 + chr3R 31464328 intergenic CG11333 + chr3R 31464432 intergenic CG11333 + chr3R_9_31460001 chr3R_31460001 RAL-761 1405 chr3R 31522370 31522398 chr3R 31522478 31522505 6 102 3.0 2.5 2.8 1.6 135 chr3R 31522370 3` UTR CR45573 - chr3R 31522438 3` UTR CR45573 - chr3R 31522505 3` UTR CR45573 - chr3R_6_31520001 chr3R_31520001 RAL-761 1406 chr3R 31528256 31528267 chr3R 31528440 31528461 5 192 1.0 4.0 2.5 1.4 205 chr3R 31528256 intergenic not near genes chr3R 31528358 intergenic not near genes chr3R 31528461 intergenic not near genes chr3R_5_31525001 chr3R_31525001 RAL-761 1407 chr3R 31589104 31589131 chr3R 31589188 31589223 10 82 1.0 2.5 1.8 3.6 119 chr3R 31589104 3` UTR,exon CR45190 -,CG1635 + chr3R 31589164 3` UTR,exon CR45190 -,CG1635 + chr3R 31589223 3` UTR,exon CR45190 -,CG1635 + chr3R_10_31585001 chr3R_31585001 RAL-761 1408 chr3R 31630060 31630083 chr3R 31630165 31630188 4 105 0.5 1.5 1.0 2.0 128 chr3R 31630060 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630188 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-761 1409 chr3R 31670607 31670631 chr3R 31670701 31670725 5 94 3.5 0.5 2.0 1.7 118 chr3R 31670607 intron CG1815 + chr3R 31670666 intron CG1815 + chr3R 31670725 intron CG1815 + chr3R_5_31670001 chr3R_31670001 RAL-761 1410 chr3R 31691539 31691549 chr3R 31696304 31696310 Doc 6 4764 3.0 6.0 4.5 1.1 4771 chr3R 31691539 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696310 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-761 1411 chr3R 31691558 31691564 chr3R 31696296 31696311 Doc 6 4748 2.0 5.0 3.5 1.3 4753 chr3R 31691558 intergenic not near genes chr3R 31693934 intergenic not near genes chr3R 31696311 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-761 1412 chr3R 31699741 31699751 chr3R 31699823 31699832 4 80 1.5 6.0 3.8 0.8 91 chr3R 31699741 intergenic not near genes chr3R 31699786 intergenic not near genes chr3R 31699832 intergenic not near genes chr3R_4_31695001 chr3R_31695001 RAL-761 1413 chr3R 31831540 31831568 chr3R 31831619 31831647 10 78 4.0 4.5 4.2 1.9 107 chr3R 31831540 intron RhoGAP100F + chr3R 31831594 intron RhoGAP100F + chr3R 31831647 intron RhoGAP100F + chr3R_10_31830001 chr3R_31830001 RAL-761 1414 chr3R 31870653 31870684 chr3R 31870744 31870775 14 90 3.5 2.5 3.0 3.5 122 chr3R 31870653 intron heph - chr3R 31870714 intron heph - chr3R 31870775 intron heph - chr3R_14_31870001 chr3R_31870001 RAL-761 1415 chr3R 31883735 31883764 chr3R 31883846 31883875 12 110 4.5 3.5 4.0 2.4 140 chr3R 31883735 intron heph - chr3R 31883805 intron heph - chr3R 31883875 intron heph - chr3R_12_31880001 chr3R_31880001 RAL-761 1416 chr3R 31925694 31925723 chr3R 31925769 31925799 8 75 0.0 1.5 0.8 4.4 105 chr3R 31925694 intron heph - chr3R 31925746 intron heph - chr3R 31925799 intron heph - chr3R_8_31925001 chr3R_31925001 RAL-761 1417 chr3R 31931194 31931215 chr3R 31931277 31931298 6 82 1.0 1.5 1.2 2.7 104 chr3R 31931194 intron heph - chr3R 31931246 intron heph - chr3R 31931298 intron heph - chr3R_6_31930001 chr3R_31930001 RAL-761 1418 chr3R 31949507 31949530 chr3R 31949593 31949616 6 86 3.0 2.5 2.8 1.6 109 chr3R 31949507 intron heph - chr3R 31949562 intron heph - chr3R 31949616 intron heph - chr3R_6_31945001 chr3R_31945001 RAL-761 1419 chr3R 31997992 31998016 chr3R 32005462 32005486 blood 4 7470 3.5 2.0 2.8 1.1 7494 chr3R 31997992 intron heph - chr3R 32001739 intron heph - chr3R 32005486 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-761 1420 chr3R 32022323 32022354 chr3R 32022425 32022443 8 100 5.5 4.5 5.0 1.3 120 chr3R 32022323 5` UTR CR45557 + chr3R 32022383 5` UTR CR45557 + chr3R 32022443 5` UTR CR45557 + chr3R_8_32020001 chr3R_32020001 RAL-761 1421 chr4 76501 76517 chr4 81938 81959 I-element 5 5440 4.5 0.0 2.2 1.6 5458 chr4 76501 intron pan + chr4 79230 intron pan + chr4 81959 intron pan + chr4_5_75001 chr4_75001 RAL-761 1422 chr4 257401 257429 chr4 257571 257599 5 170 2.0 2.0 2.0 1.7 198 chr4 257401 exon RhoGAP102A + chr4 257500 intron RhoGAP102A + chr4 257599 intron RhoGAP102A + chr4_5_255001 chr4_255001 RAL-761 1423 chr4 319991 320010 chr4 328166 328186 Stalker2 4 8175 0.5 1.5 1.0 2.0 8195 chr4 319991 3` UTR CG32850 + chr4 324088 intron CG32850 + chr4 328186 3` UTR CG32850 + chr4_4_320001 chr4_320001 RAL-761 1424 chr4 671603 671635 chr4 680186 680218 Tirant 12 8582 2.0 4.0 3.0 3.0 8615 chr4 671603 intron CG11360 + chr4 675910 intron CG11360 + chr4 680218 intron CG11360 + chr4_12_675001 chr4_675001 RAL-761 1425 chrX 318480 318501 chrX 323566 323587 flea 4 5086 1.0 2.5 1.8 1.4 5107 chrX 318480 intron,intron CG3777 +,CG32816 - chrX 321034 intron,intron CG3777 +,CG32816 - chrX 323587 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-761 1426 chrX 428418 428449 chrX 434603 434634 3S18 7 6185 6.0 1.0 3.5 1.6 6216 chrX 428418 intron CG32816 - chrX 431526 intron CG32816 - chrX 434634 intron CG32816 - chrX_7_430001 chrX_430001 RAL-761 1427 chrX 551442 551455 chrX 558992 559015 412 6 7559 3.0 1.0 2.0 2.0 7573 chrX 551442 intron Appl + chrX 555228 intron Appl + chrX 559015 intron Appl + chrX_6_555001 chrX_555001 RAL-761 1428 chrX 689433 689462 chrX 689525 689554 11 90 1.5 1.5 1.5 4.4 121 chrX 689433 intron sdk + chrX 689494 intron sdk + chrX 689554 intron sdk + chrX_11_685001 chrX_685001 RAL-761 1429 chrX 706805 706828 chrX 707162 707188 9 362 0.0 4.5 2.2 2.8 383 chrX 706805 intron sdk + chrX 706996 intron sdk + chrX 707188 intron sdk + chrX_9_705001 chrX_705001 RAL-761 1430 chrX 796747 796769 chrX 796837 796856 7 89 2.5 3.5 3.0 1.8 109 chrX 796747 3` UTR CG16989 + chrX 796802 3` UTR CG16989 + chrX 796856 3` UTR CG16989 + chrX_7_795001 chrX_795001 RAL-761 1431 chrX 827600 827629 chrX 835391 835421 roo 8 7789 3.0 5.5 4.2 1.5 7821 chrX 827600 intron CG43867 - chrX 831510 intron CG43867 - chrX 835421 intron CG43867 - chrX_8_830001 chrX_830001 RAL-761 1432 chrX 906710 906718 chrX 908495 908507 S-element 4 1788 3.5 7.0 5.2 0.6 1797 chrX 906710 intron CG43867 - chrX 907608 intron CG43867 - chrX 908507 intron CG43867 - chrX_4_905001 chrX_905001 RAL-761 1433 chrX 906719 906733 chrX 908494 908518 S-element 11 1787 1.5 7.0 4.2 2.1 1799 chrX 906719 intron CG43867 - chrX 907618 intron CG43867 - chrX 908518 intron CG43867 - chrX_11_905001 chrX_905001 RAL-761 1434 chrX 913373 913388 chrX 913510 913528 5 138 21.5 14.5 18.0 0.3 155 chrX 913373 intron CG43867 - chrX 913450 intron CG43867 - chrX 913528 intron CG43867 - chrX_5_910001 chrX_910001 RAL-761 1435 chrX 1051077 1051090 chrX 1051152 1051168 5 76 7.5 7.5 7.5 0.6 91 chrX 1051077 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051168 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-761 1436 chrX 1163316 1163326 chrX 1163379 1163404 4 68 1.0 3.0 2.0 1.3 88 chrX 1163316 intergenic CG34320 - chrX 1163360 intergenic CG34320 - chrX 1163404 intergenic CG34320 - chrX_4_1160001 chrX_1160001 RAL-761 1437 chrX 1335150 1335177 chrX 1335240 1335268 7 91 2.0 1.5 1.8 2.5 118 chrX 1335150 intron CG11409 - chrX 1335209 intron CG11409 - chrX 1335268 intron CG11409 - chrX_7_1335001 chrX_1335001 RAL-761 1438 chrX 1357777 1357808 chrX 1367947 1367978 Doc 5 10170 1.5 2.5 2.0 1.7 10201 chrX 1357777 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-761 1439 chrX 1508375 1508397 chrX 1508441 1508476 8 72 2.0 1.0 1.5 3.2 101 chrX 1508375 intron inc + chrX 1508426 intron inc + chrX 1508476 intron inc + chrX_8_1505001 chrX_1505001 RAL-761 1440 chrX 1515228 1515253 chrX 1515305 1515329 4 77 1.0 1.5 1.2 1.8 101 chrX 1515228 intron inc + chrX 1515278 intron inc + chrX 1515329 intron inc + chrX_4_1515001 chrX_1515001 RAL-761 1441 chrX 1627974 1628002 chrX 1635440 1635452 gtwin 8 7464 3.0 1.0 2.0 2.7 7478 chrX 1627974 intron,intron Mur2B -,br + chrX 1631713 intron,intron Mur2B -,br + chrX 1635452 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 RAL-761 1442 chrX 1788476 1788487 chrX 1788554 1788565 5 78 1.5 3.0 2.2 1.6 89 chrX 1788476 intron CG42666 + chrX 1788520 intron CG42666 + chrX 1788565 intron CG42666 + chrX_5_1785001 chrX_1785001 RAL-761 1443 chrX 2053405 2053421 chrX 2053484 2053494 4 76 2.5 1.5 2.0 1.3 89 chrX 2053405 intron CG4313 + chrX 2053450 intron CG4313 + chrX 2053494 intron CG4313 + chrX_4_2050001 chrX_2050001 RAL-761 1444 chrX 2578819 2578838 chrX 2578906 2578930 7 91 4.0 2.5 3.2 1.7 111 chrX 2578819 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578930 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-761 1445 chrX 2664399 2664418 chrX 2665545 2665553 1360 5 1142 0.0 3.5 1.8 1.8 1154 chrX 2664399 intron sgg + chrX 2664976 intron sgg + chrX 2665553 intron sgg + chrX_5_2660001 chrX_2660001 RAL-761 1446 chrX 3075642 3075660 chrX 3080946 3080966 Transpac 5 5305 0.5 3.5 2.0 1.7 5324 chrX 3075642 intron kirre + chrX 3078304 intron kirre + chrX 3080966 intron kirre + chrX_5_3075001 chrX_3075001 RAL-761 1447 chrX 3110694 3110727 chrX 3110964 3110970 14 267 0.0 1.5 0.8 7.8 276 chrX 3110694 intron kirre + chrX 3110832 intron kirre + chrX 3110970 intron kirre + chrX_14_3110001 chrX_3110001 RAL-761 1448 chrX 3203470 3203496 chrX 3203669 3203693 7 199 1.5 2.0 1.8 2.5 223 chrX 3203470 intron dnc + chrX 3203582 intron dnc + chrX 3203693 intron dnc + chrX_7_3200001 chrX_3200001 RAL-761 1449 chrX 3306343 3306354 chrX 3306425 3306436 6 82 1.0 0.0 0.5 4.0 93 chrX 3306343 intron dnc + chrX 3306390 intron dnc + chrX 3306436 intron dnc + chrX_6_3305001 chrX_3305001 RAL-761 1450 chrX 3369432 3369461 chrX 3369519 3369548 4 86 3.0 5.0 4.0 0.8 116 chrX 3369432 intergenic not near genes chrX 3369490 intergenic not near genes chrX 3369548 intergenic not near genes chrX_4_3365001 chrX_3365001 RAL-761 1451 chrX 3415021 3415049 chrX 3421206 3421222 3S18 5 6183 2.5 2.0 2.2 1.6 6201 chrX 3415021 intron,intron CR44999 +,CG12535 - chrX 3418122 intron,intron CR44999 +,CG12535 - chrX 3421222 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-761 1452 chrX 3516782 3516814 chrX 3516875 3516907 7 91 2.0 0.0 1.0 3.5 125 chrX 3516782 intron,intron CR44999 +,CG32791 - chrX 3516844 intron,intron CR44999 +,CG32791 - chrX 3516907 intron,intron CR44999 +,CG32791 - chrX_7_3515001 chrX_3515001 RAL-761 1453 chrX 3535416 3535425 chrX 3535504 3535516 5 90 3.0 5.5 4.2 1.0 100 chrX 3535416 intron CG32791 - chrX 3535466 intron CG32791 - chrX 3535516 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-761 1454 chrX 3595023 3595052 chrX 3595097 3595122 6 76 0.5 3.5 2.0 2.0 99 chrX 3595023 intron AstA-R1 + chrX 3595072 intron AstA-R1 + chrX 3595122 intron AstA-R1 + chrX_6_3595001 chrX_3595001 RAL-761 1455 chrX 3597549 3597579 chrX 3619717 3619744 roo 11 22167 2.5 0.0 1.2 5.0 22195 chrX 3597549 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-761 1456 chrX 3881268 3881304 chrX 3881407 3881443 5 139 3.0 2.5 2.8 1.3 175 chrX 3881268 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-761 1457 chrX 3986870 3986896 chrX 3994502 3994529 412 8 7633 2.0 2.0 2.0 2.7 7659 chrX 3986870 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994529 intergenic not near genes chrX_8_3990001 chrX_3990001 RAL-761 1458 chrX 4048510 4048528 chrX 4048585 4048602 6 75 2.0 4.0 3.0 1.5 92 chrX 4048510 3` UTR CR45482 - chrX 4048556 3` UTR CR45482 - chrX 4048602 3` UTR CR45482 - chrX_6_4045001 chrX_4045001 RAL-761 1459 chrX 4065861 4065875 chrX 4065945 4065960 5 81 2.0 0.0 1.0 2.5 99 chrX 4065861 intergenic not near genes chrX 4065910 intergenic not near genes chrX 4065960 intergenic not near genes chrX_5_4065001 chrX_4065001 RAL-761 1460 chrX 4398828 4398852 chrX 4398917 4398941 7 89 0.5 4.0 2.2 2.2 113 chrX 4398828 intron CR32773 - chrX 4398884 intron CR32773 - chrX 4398941 intron CR32773 - chrX_7_4395001 chrX_4395001 RAL-761 1461 chrX 4525756 4525771 chrX 4525847 4525863 4 92 1.0 1.0 1.0 2.0 107 chrX 4525756 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525863 intron CR32773 - chrX_4_4525001 chrX_4525001 RAL-761 1462 chrX 4661965 4661987 chrX 4662032 4662058 7 67 2.5 3.0 2.8 1.8 93 chrX 4661965 intron CG3009 - chrX 4662012 intron CG3009 - chrX 4662058 intron CG3009 - chrX_7_4660001 chrX_4660001 RAL-761 1463 chrX 4763250 4763282 chrX 4763738 4763770 Stalker4 10 487 4.5 1.0 2.8 2.6 520 chrX 4763250 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763770 intergenic not near genes chrX_10_4760001 chrX_4760001 RAL-761 1464 chrX 4792388 4792403 chrX 4792821 4792835 jockey 4 432 4.0 5.0 4.5 0.7 447 chrX 4792388 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792835 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-761 1465 chrX 4805477 4805477 chrX 7978935 7978935 4 3173458 10.0 15.0 12.5 0.3 3173458 chrX 4805477 3` UTR CR45516 - chrX 6392206 intergenic not near genes chrX 7978935 intron sn + chrX_4_6390001 chrX_6390001 RAL-761 1466 chrX 4827974 4827995 chrX 4835345 4835366 Stalker4 5 7371 6.5 1.0 3.8 1.0 7392 chrX 4827974 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835366 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-761 1467 chrX 4827997 4828000 chrX 4835342 4835370 Stalker4 4 7359 4.0 1.0 2.5 1.1 7373 chrX 4827997 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835370 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-761 1468 chrX 4990045 4990074 chrX 4997259 4997288 roo 9 7214 1.0 1.0 1.0 4.5 7243 chrX 4990045 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997288 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-761 1469 chrX 5020895 5020910 chrX 5020985 5021003 7 92 3.0 5.0 4.0 1.4 108 chrX 5020895 intron CR44833 - chrX 5020949 intron CR44833 - chrX 5021003 intron CR44833 - chrX_7_5020001 chrX_5020001 RAL-761 1470 chrX 5096275 5096295 chrX 5103840 5103860 springer 6 7562 1.5 3.0 2.2 1.9 7585 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103860 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-761 1471 chrX 5512058 5512068 chrX 5512141 5512145 6 82 2.0 0.0 1.0 3.0 87 chrX 5512058 intergenic not near genes chrX 5512102 intergenic not near genes chrX 5512145 intergenic not near genes chrX_6_5510001 chrX_5510001 RAL-761 1472 chrX 5524850 5524873 chrX 5528713 5528736 412 4 3863 1.0 1.0 1.0 2.0 3886 chrX 5524850 intergenic snoRNA:Psi28S-3342 - chrX 5526793 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-761 1473 chrX 5798869 5798891 chrX 5799031 5799041 11 160 0.5 5.5 3.0 2.8 172 chrX 5798869 intergenic not near genes chrX 5798955 intergenic not near genes chrX 5799041 intergenic not near genes chrX_11_5795001 chrX_5795001 RAL-761 1474 chrX 5883814 5883836 chrX 5884055 5884077 pogo 7 240 1.5 1.5 1.5 2.8 263 chrX 5883814 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884077 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-761 1475 chrX 5884164 5884184 chrX 5884405 5884423 pogo 6 240 2.0 1.0 1.5 2.4 259 chrX 5884164 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884423 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-761 1476 chrX 5922103 5922127 chrX 5922214 5922238 10 110 3.0 4.0 3.5 2.2 135 chrX 5922103 intron CG3726 + chrX 5922170 intron CG3726 + chrX 5922238 intron CG3726 + chrX_10_5920001 chrX_5920001 RAL-761 1477 chrX 6171587 6171614 chrX 6179020 6179045 Quasimodo 5 7431 2.0 3.5 2.8 1.3 7458 chrX 6171587 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179045 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-761 1478 chrX 6198388 6198396 chrX 6202239 6202247 4 3851 0.5 13.5 7.0 0.5 3859 chrX 6198388 exon CG32751 - chrX 6200318 3` UTR vanin-like - chrX 6202247 exon vanin-like - chrX_4_6200001 chrX_6200001 RAL-761 1479 chrX 6312201 6312210 chrX 6312284 6312293 6 82 3.0 7.0 5.0 1.0 92 chrX 6312201 intron CG15894 + chrX 6312247 intron CG15894 + chrX 6312293 intron CG15894 + chrX_6_6310001 chrX_6310001 RAL-761 1480 chrX 6314433 6314450 chrX 6314504 6314524 8 73 2.5 4.0 3.2 1.9 91 chrX 6314433 intron CG15894 + chrX 6314478 intron CG15894 + chrX 6314524 intron CG15894 + chrX_8_6310001 chrX_6310001 RAL-761 1481 chrX 6335214 6335244 chrX 6337722 6337754 Tirant 10 2509 0.0 2.5 1.2 4.5 2540 chrX 6335214 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_10_6335001 chrX_6335001 RAL-761 1482 chrX 6370548 6370558 chrX 6370646 6370657 7 98 3.5 0.5 2.0 2.3 109 chrX 6370548 3` UTR Marf + chrX 6370602 3` UTR,3` UTR Marf +,CR44816 - chrX 6370657 3` UTR,3` UTR Marf +,CR44816 - chrX_7_6370001 chrX_6370001 RAL-761 1483 chrX 6392872 6392899 chrX 6397637 6397664 Doc 13 4764 0.5 2.0 1.2 5.9 4792 chrX 6392872 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397664 intergenic not near genes chrX_13_6395001 chrX_6395001 RAL-761 1484 chrX 6404847 6404868 chrX 6404974 6404995 6 126 2.0 5.0 3.5 1.3 148 chrX 6404847 intergenic not near genes chrX 6404921 intergenic not near genes chrX 6404995 intergenic not near genes chrX_6_6400001 chrX_6400001 RAL-761 1485 chrX 6413533 6413565 chrX 6413967 6413999 9 433 4.0 2.5 3.2 2.1 466 chrX 6413533 intergenic not near genes chrX 6413766 intergenic not near genes chrX 6413999 intergenic not near genes chrX_9_6410001 chrX_6410001 RAL-761 1486 chrX 6562819 6562849 chrX 6571301 6571318 Tirant 9 8475 3.0 4.5 3.8 1.9 8499 chrX 6562819 intron CG34417 + chrX 6567068 intron CG34417 + chrX 6571318 intron CG34417 + chrX_9_6565001 chrX_6565001 RAL-761 1487 chrX 6737520 6737552 chrX 6737602 6737634 13 79 2.0 1.0 1.5 5.2 114 chrX 6737520 intron CG3168 - chrX 6737577 intron CG3168 - chrX 6737634 intron CG3168 - chrX_13_6735001 chrX_6735001 RAL-761 1488 chrX 6897696 6897710 chrX 6897806 6897820 4 110 2.0 5.0 3.5 0.9 124 chrX 6897696 intergenic not near genes chrX 6897758 intergenic not near genes chrX 6897820 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-761 1489 chrX 6988183 6988210 chrX 6988259 6988285 7 74 2.5 0.5 1.5 2.8 102 chrX 6988183 intron ogre - chrX 6988234 intron ogre - chrX 6988285 intron ogre - chrX_7_6985001 chrX_6985001 RAL-761 1490 chrX 7023600 7023632 chrX 7030990 7031022 Tabor 6 7389 4.5 1.5 3.0 1.5 7422 chrX 7023600 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031022 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-761 1491 chrX 7048638 7048661 chrX 7048705 7048728 11 73 3.0 0.5 1.8 3.9 90 chrX 7048638 intron CG12541 - chrX 7048683 intron CG12541 - chrX 7048728 intron CG12541 - chrX_11_7045001 chrX_7045001 RAL-761 1492 chrX 7125255 7125278 chrX 7134413 7134437 roo 6 9157 2.0 4.5 3.2 1.4 9182 chrX 7125255 intergenic not near genes chrX 7129846 intergenic not near genes chrX 7134437 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-761 1493 chrX 7570634 7570665 chrX 7570768 7570799 7 134 2.0 1.5 1.8 2.5 165 chrX 7570634 intergenic not near genes chrX 7570716 intergenic not near genes chrX 7570799 intergenic not near genes chrX_7_7570001 chrX_7570001 RAL-761 1494 chrX 7702914 7702932 chrX 7703353 7703365 jockey 5 438 2.0 5.0 3.5 1.1 451 chrX 7702914 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-761 1495 chrX 7784236 7784261 chrX 7784537 7784542 jockey 5 297 2.5 3.0 2.8 1.3 306 chrX 7784236 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784542 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-761 1496 chrX 7832439 7832461 chrX 7832528 7832544 4 88 1.0 1.0 1.0 2.0 105 chrX 7832439 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832544 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-761 1497 chrX 7970448 7970481 chrX 7970742 7970774 11 293 3.5 3.0 3.2 2.6 326 chrX 7970448 intron sn + chrX 7970611 intron sn + chrX 7970774 intron sn + chrX_11_7970001 chrX_7970001 RAL-761 1498 chrX 8031438 8031459 chrX 8035747 8035768 Juan 4 4308 1.5 0.5 1.0 2.0 4330 chrX 8031438 intergenic not near genes chrX 8033603 intergenic not near genes chrX 8035768 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-761 1499 chrX 8085573 8085599 chrX 8085659 8085685 4 86 2.0 1.5 1.8 1.4 112 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085685 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-761 1500 chrX 8340200 8340228 chrX 8340312 8340340 6 112 3.5 2.5 3.0 1.5 140 chrX 8340200 intron nAChRalpha3 - chrX 8340270 intron nAChRalpha3 - chrX 8340340 intron nAChRalpha3 - chrX_6_8340001 chrX_8340001 RAL-761 1501 chrX 8371153 8371164 chrX 8371315 8371319 4 160 3.0 0.0 1.5 1.6 166 chrX 8371153 intergenic not near genes chrX 8371236 intergenic not near genes chrX 8371319 intergenic not near genes chrX_4_8370001 chrX_8370001 RAL-761 1502 chrX 8536759 8536780 chrX 8536834 8536853 8 75 3.0 0.0 1.5 3.2 94 chrX 8536759 intron Nrg + chrX 8536806 intron Nrg + chrX 8536853 intron Nrg + chrX_8_8535001 chrX_8535001 RAL-761 1503 chrX 8860783 8860799 chrX 8860867 8860877 4 82 0.0 2.5 1.2 1.8 94 chrX 8860783 intron CG12075 + chrX 8860830 intron CG12075 + chrX 8860877 intron CG12075 + chrX_4_8860001 chrX_8860001 RAL-761 1504 chrX 8922341 8922354 chrX 8922759 8922788 jockey 5 425 4.0 4.5 4.2 1.0 447 chrX 8922341 intron rdgA + chrX 8922564 intron rdgA + chrX 8922788 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-761 1505 chrX 8948763 8948787 chrX 8956273 8956297 roo 6 7510 0.5 2.5 1.5 2.4 7534 chrX 8948763 intron rdgA + chrX 8952530 intron rdgA + chrX 8956297 intron rdgA + chrX_6_8950001 chrX_8950001 RAL-761 1506 chrX 9062731 9062756 chrX 9062805 9062834 4 76 2.0 2.0 2.0 1.3 103 chrX 9062731 intron CG15365 - chrX 9062782 intron CG15365 - chrX 9062834 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-761 1507 chrX 9273028 9273041 chrX 9273108 9273122 4 80 2.5 0.0 1.2 1.8 94 chrX 9273028 intergenic Cfp1 -,CG16892 + chrX 9273075 intergenic Cfp1 -,CG16892 + chrX 9273122 intergenic Cfp1 -,CG16892 + chrX_4_9270001 chrX_9270001 RAL-761 1508 chrX 9377831 9377864 chrX 9377910 9377943 7 78 2.0 2.5 2.2 2.2 112 chrX 9377831 intron mgl - chrX 9377887 intron mgl - chrX 9377943 intron mgl - chrX_7_9375001 chrX_9375001 RAL-761 1509 chrX 9575790 9575812 chrX 9576113 9576136 mdg3 6 322 5.0 2.5 3.8 1.2 346 chrX 9575790 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576136 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-761 1510 chrX 9576739 9576764 chrX 9576962 9576977 6 221 0.5 0.0 0.2 5.0 238 chrX 9576739 intron CG32699 - chrX 9576858 intron CG32699 - chrX 9576977 intron CG32699 - chrX_6_9575001 chrX_9575001 RAL-761 1511 chrX 8382094 8382094 chrX 9845361 9845361 4 1463267 9.0 16.5 12.8 0.3 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-761 1512 chrX 10065486 10065511 chrX 10065629 10065657 12 146 1.5 1.5 1.5 4.8 171 chrX 10065486 intron CG15312 - chrX 10065572 intron CG15312 - chrX 10065657 intron CG15312 - chrX_12_10065001 chrX_10065001 RAL-761 1513 chrX 10150012 10150027 chrX 10150235 10150250 5 223 2.5 1.0 1.8 1.8 238 chrX 10150012 intron CR44894 - chrX 10150131 intron CR44894 - chrX 10150250 intron CR44894 - chrX_5_10150001 chrX_10150001 RAL-761 1514 chrX 10154286 10154306 chrX 10154361 10154382 8 75 4.5 1.0 2.8 2.1 96 chrX 10154286 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154382 intron,intron CR44894 -,CG12645 + chrX_8_10150001 chrX_10150001 RAL-761 1515 chrX 10694151 10694173 chrX 10694231 10694249 6 79 3.5 3.5 3.5 1.3 98 chrX 10694151 intron X11Lbeta + chrX 10694200 intron X11Lbeta + chrX 10694249 intron X11Lbeta + chrX_6_10690001 chrX_10690001 RAL-761 1516 chrX 10728921 10728944 chrX 10728999 10729024 5 74 3.0 1.0 2.0 1.7 103 chrX 10728921 intron CG32676 - chrX 10728972 intron CG32676 - chrX 10729024 intron CG32676 - chrX_5_10725001 chrX_10725001 RAL-761 1517 chrX 10772681 10772698 chrX 10772758 10772769 Tirant 4 73 2.0 0.0 1.0 2.0 88 chrX 10772681 intron CG15211 + chrX 10772725 intron CG15211 + chrX 10772769 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-761 1518 chrX 10803035 10803049 chrX 10803120 10803134 7 83 5.5 5.5 5.5 1.1 99 chrX 10803035 intron Imp - chrX 10803084 intron Imp - chrX 10803134 intron Imp - chrX_7_10800001 chrX_10800001 RAL-761 1519 chrX 10925503 10925532 chrX 10925582 10925611 9 78 1.5 2.0 1.8 3.2 108 chrX 10925503 exon v + chrX 10925557 3` UTR v + chrX 10925611 3` UTR v + chrX_9_10925001 chrX_10925001 RAL-761 1520 chrX 11069173 11069191 chrX 11069316 11069331 4 142 0.5 1.5 1.0 2.0 158 chrX 11069173 intergenic not near genes chrX 11069252 intergenic not near genes chrX 11069331 intergenic not near genes chrX_4_11065001 chrX_11065001 RAL-761 1521 chrX 11142062 11142067 chrX 11142138 11142143 4 75 0.0 1.0 0.5 2.7 81 chrX 11142062 intergenic CG15199 -,CG15202 + chrX 11142102 intergenic CG15199 -,CG15202 + chrX 11142143 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-761 1522 chrX 11254182 11254200 chrX 11254293 11254297 4 108 2.5 4.5 3.5 0.9 115 chrX 11254182 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254297 intron CG44422 - chrX_4_11250001 chrX_11250001 RAL-761 1523 chrX 11312067 11312083 chrX 11319420 11319436 Stalker2 4 7351 3.0 1.0 2.0 1.3 7369 chrX 11312067 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319436 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-761 1524 chrX 11379766 11379784 chrX 11379910 11379928 5 144 7.0 1.0 4.0 1.0 162 chrX 11379766 intron dlg1 + chrX 11379847 intron dlg1 + chrX 11379928 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-761 1525 chrX 11554233 11554270 chrX 11554344 11554364 9 108 3.0 2.5 2.8 2.4 131 chrX 11554233 3` UTR Drak + chrX 11554298 3` UTR Drak + chrX 11554364 3` UTR Drak + chrX_9_11550001 chrX_11550001 RAL-761 1526 chrX 11571460 11571485 chrX 11571697 11571722 pogo 5 237 4.5 5.0 4.8 0.9 262 chrX 11571460 3` UTR Kmn1 - chrX 11571591 3` UTR Kmn1 - chrX 11571722 3` UTR Kmn1 - chrX_5_11570001 chrX_11570001 RAL-761 1527 chrX 11633415 11633449 chrX 11640469 11640503 297 6 7050 2.0 1.0 1.5 2.4 7088 chrX 11633415 intron Ptp10D + chrX 11636959 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-761 1528 chrX 11804675 11804686 chrX 11804779 11804790 4 104 0.5 1.0 0.8 2.2 115 chrX 11804675 intron Hsc70-3 - chrX 11804732 intron Hsc70-3 - chrX 11804790 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-761 1529 chrX 11880929 11880949 chrX 11881011 11881031 6 82 3.0 2.0 2.5 1.7 102 chrX 11880929 intron CG10353 - chrX 11880980 intron CG10353 - chrX 11881031 intron CG10353 - chrX_6_11880001 chrX_11880001 RAL-761 1530 chrX 11922368 11922383 chrX 11922504 11922519 6 136 2.0 3.0 2.5 1.7 151 chrX 11922368 exon Sclp - chrX 11922444 intron Sclp - chrX 11922519 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-761 1531 chrX 11936574 11936582 chrX 11936669 11936681 5 98 0.0 2.5 1.2 2.3 107 chrX 11936574 intron cac - chrX 11936628 intron cac - chrX 11936681 intron cac - chrX_5_11935001 chrX_11935001 RAL-761 1532 chrX 12038088 12038117 chrX 12038280 12038310 20 193 3.5 3.0 3.2 4.8 222 chrX 12038088 intergenic not near genes chrX 12038199 intergenic not near genes chrX 12038310 intergenic not near genes chrX_20_12035001 chrX_12035001 RAL-761 1533 chrX 12069059 12069085 chrX 12069146 12069172 6 86 3.0 2.0 2.5 1.7 113 chrX 12069059 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069116 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069172 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_6_12065001 chrX_12065001 RAL-761 1534 chrX 12126150 12126170 chrX 12126505 12126526 8 356 2.0 4.0 3.0 2.0 376 chrX 12126150 intron Ten-a + chrX 12126338 intron Ten-a + chrX 12126526 intron Ten-a + chrX_8_12125001 chrX_12125001 RAL-761 1535 chrX 12176748 12176769 chrX 12176819 12176845 8 75 1.5 6.0 3.8 1.7 97 chrX 12176748 intron,3` UTR Ten-a +,CG1924 - chrX 12176796 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_8_12175001 chrX_12175001 RAL-761 1536 chrX 12356861 12356880 chrX 12356961 12356973 4 104 0.5 1.0 0.8 2.2 112 chrX 12356861 intergenic not near genes chrX 12356917 intergenic not near genes chrX 12356973 intergenic not near genes chrX_4_12355001 chrX_12355001 RAL-761 1537 chrX 12528870 12528889 chrX 12528946 12528965 6 75 0.5 0.0 0.2 5.0 95 chrX 12528870 intron CG43921 - chrX 12528918 intron CG43921 - chrX 12528965 intron CG43921 - chrX_6_12525001 chrX_12525001 RAL-761 1538 chrX 12715404 12715420 chrX 12715598 12715614 5 194 0.5 5.0 2.8 1.3 210 chrX 12715404 intron Smr - chrX 12715509 intron Smr - chrX 12715614 intron Smr - chrX_5_12715001 chrX_12715001 RAL-761 1539 chrX 12912639 12912647 chrX 12912736 12912744 4 97 0.0 0.5 0.2 3.3 105 chrX 12912639 5` UTR CR45625 + chrX 12912692 5` UTR CR45625 + chrX 12912744 5` UTR CR45625 + chrX_4_12910001 chrX_12910001 RAL-761 1540 chrX 12971691 12971708 chrX 12971768 12971785 15 76 4.5 3.0 3.8 3.1 94 chrX 12971691 intron,exon CR43636 -,CG15721 + chrX 12971738 intron,exon CR43636 -,CG15721 + chrX 12971785 intron,exon CR43636 -,CG15721 + chrX_15_12970001 chrX_12970001 RAL-761 1541 chrX 13061359 13061372 chrX 13061470 13061483 4 111 2.0 0.5 1.2 1.8 124 chrX 13061359 intron rad + chrX 13061421 intron rad + chrX 13061483 intron rad + chrX_4_13060001 chrX_13060001 RAL-761 1542 chrX 13172357 13172364 chrX 13172432 13172439 4 75 6.0 3.5 4.8 0.7 82 chrX 13172357 exon CG34411 - chrX 13172398 intron CG34411 - chrX 13172439 intron CG34411 - chrX_4_13170001 chrX_13170001 RAL-761 1543 chrX 13278161 13278177 chrX 13278244 13278258 4 82 3.5 1.0 2.2 1.2 97 chrX 13278161 intron HDAC4 - chrX 13278210 intron HDAC4 - chrX 13278258 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-761 1544 chrX 13429464 13429491 chrX 13430611 13430640 jockey 9 1148 3.0 1.5 2.2 2.8 1176 chrX 13429464 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430640 intergenic not near genes chrX_9_13430001 chrX_13430001 RAL-761 1545 chrX 13485710 13485720 chrX 13485772 13485799 7 74 1.5 3.0 2.2 2.2 89 chrX 13485710 intron Neto + chrX 13485754 intron Neto + chrX 13485799 intron Neto + chrX_7_13485001 chrX_13485001 RAL-761 1546 chrX 13843394 13843409 chrX 13843547 13843562 4 153 1.0 2.5 1.8 1.4 168 chrX 13843394 intron AMPdeam - chrX 13843478 intron AMPdeam - chrX 13843562 intron AMPdeam - chrX_4_13840001 chrX_13840001 RAL-761 1547 chrX 13915430 13915458 chrX 13915562 13915590 8 131 4.0 1.5 2.8 2.1 160 chrX 13915430 intron mamo - chrX 13915510 intron mamo - chrX 13915590 intron mamo - chrX_8_13915001 chrX_13915001 RAL-761 1548 chrX 13935515 13935527 chrX 13935598 13935609 4 82 2.0 7.0 4.5 0.7 94 chrX 13935515 intron mamo - chrX 13935562 intron mamo - chrX 13935609 intron mamo - chrX_4_13935001 chrX_13935001 RAL-761 1549 chrX 13937981 13938004 chrX 13941252 13941261 I-element 4 3264 3.0 1.0 2.0 1.3 3280 chrX 13937981 intron mamo - chrX 13939621 intron mamo - chrX 13941261 intron mamo - chrX_4_13935001 chrX_13935001 RAL-761 1550 chrX 13943276 13943296 chrX 13943367 13943387 8 91 0.0 3.0 1.5 3.2 111 chrX 13943276 intron mamo - chrX 13943332 intron mamo - chrX 13943387 intron mamo - chrX_8_13940001 chrX_13940001 RAL-761 1551 chrX 13975880 13975907 chrX 13975957 13975983 6 77 0.0 1.5 0.8 3.3 103 chrX 13975880 intron mamo - chrX 13975932 intron mamo - chrX 13975983 intron mamo - chrX_6_13975001 chrX_13975001 RAL-761 1552 chrX 14105041 14105056 chrX 14114176 14114205 roo 8 9148 5.5 1.5 3.5 1.8 9164 chrX 14105041 intergenic not near genes chrX 14109623 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-761 1553 chrX 14130689 14130703 chrX 14130761 14130764 5 71 2.0 2.5 2.2 1.6 75 chrX 14130689 intergenic not near genes chrX 14130726 intergenic not near genes chrX 14130764 intergenic not near genes chrX_5_14130001 chrX_14130001 RAL-761 1554 chrX 14157591 14157620 chrX 14163248 14163275 297 5 5657 1.5 3.0 2.2 1.6 5684 chrX 14157591 intergenic not near genes chrX 14160433 intergenic not near genes chrX 14163275 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-761 1555 chrX 14333288 14333320 chrX 14333370 14333385 5 76 0.5 1.5 1.0 2.5 97 chrX 14333288 intron dpr8 + chrX 14333336 intron dpr8 + chrX 14333385 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-761 1556 chrX 14340275 14340308 chrX 14340376 14340401 5 99 1.0 0.5 0.8 2.8 126 chrX 14340275 intron dpr8 + chrX 14340338 intron dpr8 + chrX 14340401 intron dpr8 + chrX_5_14340001 chrX_14340001 RAL-761 1557 chrX 14484979 14484995 chrX 14485068 14485084 4 86 0.0 4.5 2.2 1.2 105 chrX 14484979 intergenic not near genes chrX 14485032 intergenic not near genes chrX 14485084 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-761 1558 chrX 14560272 14560290 chrX 14560356 14560371 5 83 2.5 3.0 2.8 1.3 99 chrX 14560272 intergenic not near genes chrX 14560322 intergenic not near genes chrX 14560371 intergenic not near genes chrX_5_14560001 chrX_14560001 RAL-761 1559 chrX 14589696 14589706 chrX 14589937 14589947 pogo 4 241 2.0 4.5 3.2 1.0 251 chrX 14589696 intron CG9413 - chrX 14589822 intron CG9413 - chrX 14589947 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-761 1560 chrX 14762190 14762204 chrX 14762269 14762283 5 79 5.5 7.0 6.2 0.7 93 chrX 14762190 intron CG15890 - chrX 14762236 intron CG15890 - chrX 14762283 intron CG15890 - chrX_5_14760001 chrX_14760001 RAL-761 1561 chrX 14767956 14767974 chrX 14768036 14768054 5 80 0.0 1.5 0.8 2.8 98 chrX 14767956 intergenic not near genes chrX 14768005 intergenic not near genes chrX 14768054 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-761 1562 chrX 14774988 14775011 chrX 14775065 14775088 8 77 1.5 1.0 1.2 3.6 100 chrX 14774988 intergenic CG5334 + chrX 14775038 intergenic CG5334 + chrX 14775088 intergenic CG5334 + chrX_8_14775001 chrX_14775001 RAL-761 1563 chrX 14778029 14778054 chrX 14782826 14782851 Doc 4 4797 1.5 3.5 2.5 1.1 4822 chrX 14778029 intergenic CG5347 + chrX 14780440 intergenic not near genes chrX 14782851 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-761 1564 chrX 14806766 14806778 chrX 14806853 14806866 5 88 1.0 0.0 0.5 3.3 100 chrX 14806766 intron rut - chrX 14806816 intron rut - chrX 14806866 intron rut - chrX_5_14805001 chrX_14805001 RAL-761 1565 chrX 14818779 14818791 chrX 14823983 14823986 copia 5 5201 3.5 2.0 2.8 1.3 5207 chrX 14818779 intron rut - chrX 14821382 intron rut - chrX 14823986 intron rut - chrX_5_14820001 chrX_14820001 RAL-761 1566 chrX 14818792 14818797 chrX 14823977 14823986 copia 6 5195 3.0 1.0 2.0 2.0 5194 chrX 14818792 intron rut - chrX 14821389 intron rut - chrX 14823986 intron rut - chrX_6_14820001 chrX_14820001 RAL-761 1567 chrX 14936860 14936890 chrX 14946114 14946147 roo 6 9256 2.0 3.5 2.8 1.6 9287 chrX 14936860 intron pdgy - chrX 14941504 intron pdgy - chrX 14946147 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-761 1568 chrX 15291999 15292018 chrX 15292095 15292114 4 96 5.0 1.5 3.2 1.0 115 chrX 15291999 intergenic not near genes chrX 15292056 intergenic not near genes chrX 15292114 intergenic not near genes chrX_4_15290001 chrX_15290001 RAL-761 1569 chrX 15413059 15413068 chrX 15417353 15417363 Juan 4 4298 4.5 4.5 4.5 0.7 4304 chrX 15413059 intron Cngl - chrX 15415211 intron Cngl - chrX 15417363 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-761 1570 chrX 15435691 15435704 chrX 15436113 15436137 rover 4 430 0.5 4.0 2.2 1.2 446 chrX 15435691 intron Cngl - chrX 15435914 intron Cngl - chrX 15436137 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-761 1571 chrX 15492506 15492523 chrX 15492597 15492613 5 91 4.5 3.0 3.8 1.0 107 chrX 15492506 intron Gmap + chrX 15492560 intron Gmap + chrX 15492613 intron Gmap + chrX_5_15490001 chrX_15490001 RAL-761 1572 chrX 15678042 15678068 chrX 15678119 15678145 7 76 2.0 4.0 3.0 1.8 103 chrX 15678042 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_7_15675001 chrX_15675001 RAL-761 1573 chrX 15898439 15898458 chrX 15898593 15898599 7 152 0.5 1.0 0.8 3.9 160 chrX 15898439 intron shi + chrX 15898519 intron shi + chrX 15898599 intron shi + chrX_7_15895001 chrX_15895001 RAL-761 1574 chrX 16308929 16308939 chrX 16309011 16309013 5 80 0.0 3.0 1.5 2.0 84 chrX 16308929 intergenic CR45485 +,CG9914 - chrX 16308971 intergenic CR45485 +,CG9914 - chrX 16309013 intergenic CR45485 +,CG9914 - chrX_5_16305001 chrX_16305001 RAL-761 1575 chrX 16492651 16492673 chrX 16498226 16498250 mdg3 6 5577 4.0 2.5 3.2 1.4 5599 chrX 16492651 intron para - chrX 16495450 intron para - chrX 16498250 intron para - chrX_6_16495001 chrX_16495001 RAL-761 1576 chrX 16689655 16689656 chrX 16689715 16689720 4 62 1.5 3.5 2.5 1.1 65 chrX 16689655 intron Sep4 - chrX 16689688 intron Sep4 - chrX 16689720 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-761 1577 chrX 16841409 16841425 chrX 16841487 16841502 4 78 2.0 1.0 1.5 1.6 93 chrX 16841409 exon RSG7 - chrX 16841456 intron RSG7 - chrX 16841502 intron RSG7 - chrX_4_16840001 chrX_16840001 RAL-761 1578 chrX 17011971 17011998 chrX 17012054 17012081 10 78 2.5 3.5 3.0 2.5 110 chrX 17011971 intron CG45002 - chrX 17012026 intron CG45002 - chrX 17012081 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-761 1579 chrX 17195202 17195234 chrX 17200288 17200320 flea 5 5083 1.0 0.5 0.8 2.8 5118 chrX 17195202 3` UTR baz + chrX 17197761 3` UTR baz + chrX 17200320 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-761 1580 chrX 17229956 17229967 chrX 17230059 17230070 4 103 3.0 0.5 1.8 1.4 114 chrX 17229956 intergenic CG10597 - chrX 17230013 intergenic CG10597 - chrX 17230070 intergenic CG10597 - chrX_4_17230001 chrX_17230001 RAL-761 1581 chrX 17502351 17502370 chrX 17502431 17502450 4 80 0.5 2.0 1.2 1.8 99 chrX 17502351 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502450 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-761 1582 chrX 17536855 17536876 chrX 17536938 17536958 4 82 1.5 3.0 2.2 1.2 103 chrX 17536855 intron CG43658 - chrX 17536906 intron CG43658 - chrX 17536958 intron CG43658 - chrX_4_17535001 chrX_17535001 RAL-761 1583 chrX 17545012 17545034 chrX 17545092 17545116 8 80 3.5 2.0 2.8 2.1 104 chrX 17545012 intron CG43658 - chrX 17545064 intron CG43658 - chrX 17545116 intron CG43658 - chrX_8_17545001 chrX_17545001 RAL-761 1584 chrX 17680900 17680921 chrX 17680977 17680998 9 75 2.0 6.5 4.2 1.7 98 chrX 17680900 intron chas - chrX 17680949 intron chas - chrX 17680998 intron chas - chrX_9_17680001 chrX_17680001 RAL-761 1585 chrX 17782573 17782584 chrX 17782662 17782673 6 88 2.5 3.0 2.8 1.6 100 chrX 17782573 intergenic not near genes chrX 17782623 intergenic not near genes chrX 17782673 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-761 1586 chrX 17782588 17782598 chrX 17782655 17782686 6 78 1.5 2.5 2.0 2.0 98 chrX 17782588 intergenic not near genes chrX 17782637 intergenic not near genes chrX 17782686 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-761 1587 chrX 18122822 18122843 chrX 18122898 18122919 6 74 3.0 3.0 3.0 1.5 97 chrX 18122822 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122919 5` UTR CR45606 + chrX_6_18120001 chrX_18120001 RAL-761 1588 chrX 18182304 18182312 chrX 18182659 18182666 4 353 2.0 3.5 2.8 1.1 362 chrX 18182304 intron Frq2 + chrX 18182485 intron Frq2 + chrX 18182666 intron Frq2 + chrX_4_18180001 chrX_18180001 RAL-761 1589 chrX 18182314 18182331 chrX 18182653 18182685 4 346 1.5 3.0 2.2 1.2 371 chrX 18182314 intron Frq2 + chrX 18182500 intron Frq2 + chrX 18182685 intron Frq2 + chrX_4_18180001 chrX_18180001 RAL-761 1590 chrX 18194065 18194103 chrX 18194600 18194638 BS 11 534 1.5 0.5 1.0 5.5 573 chrX 18194065 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194638 intron Frq2 + chrX_11_18190001 chrX_18190001 RAL-761 1591 chrX 18429495 18429527 chrX 18434804 18434838 Transpac 6 5310 1.0 2.5 1.8 2.1 5343 chrX 18429495 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434838 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-761 1592 chrX 18645014 18645046 chrX 18645112 18645144 7 97 0.0 0.5 0.2 5.8 130 chrX 18645014 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645144 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-761 1593 chrX 18774451 18774472 chrX 18774536 18774553 8 83 3.5 0.0 1.8 2.9 102 chrX 18774451 intergenic CCKLR-17D3 - chrX 18774502 intergenic CCKLR-17D3 - chrX 18774553 intergenic not near genes chrX_8_18770001 chrX_18770001 RAL-761 1594 chrX 19014378 19014389 chrX 19014439 19014449 4 70 4.5 6.0 5.2 0.6 71 chrX 19014378 intron CG43759 + chrX 19014414 intron CG43759 + chrX 19014449 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-761 1595 chrX 19020590 19020620 chrX 19020667 19020695 4 77 0.5 1.0 0.8 2.2 105 chrX 19020590 intron CG43759 + chrX 19020642 intron CG43759 + chrX 19020695 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-761 1596 chrX 19060408 19060435 chrX 19065192 19065219 Doc 7 4784 2.0 3.5 2.8 1.8 4811 chrX 19060408 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065219 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-761 1597 chrX 19084099 19084120 chrX 19084219 19084240 7 119 0.0 0.5 0.2 5.8 141 chrX 19084099 intergenic CR45503 + chrX 19084170 intergenic CR45503 + chrX 19084240 intergenic CR45503 + chrX_7_19080001 chrX_19080001 RAL-761 1598 chrX 19099665 19099673 chrX 19099748 19099754 5 83 5.0 2.0 3.5 1.1 89 chrX 19099665 intergenic not near genes chrX 19099710 intergenic not near genes chrX 19099754 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-761 1599 chrX 19136553 19136585 chrX 19143473 19143504 412 5 6919 1.5 1.5 1.5 2.0 6951 chrX 19136553 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-761 1600 chrX 19147645 19147667 chrX 19147817 19147838 5 172 1.0 1.5 1.2 2.3 193 chrX 19147645 intron RhoGAP18B - chrX 19147742 intron RhoGAP18B - chrX 19147838 intron RhoGAP18B - chrX_5_19145001 chrX_19145001 RAL-761 1601 chrX 19176208 19176233 chrX 19176291 19176314 14 80 3.0 2.5 2.8 3.7 106 chrX 19176208 3` UTR CG7556 - chrX 19176261 3` UTR CG7556 - chrX 19176314 3` UTR CG7556 - chrX_14_19175001 chrX_19175001 RAL-761 1602 chrX 19240216 19240242 chrX 19240301 19240324 4 85 1.0 1.5 1.2 1.8 108 chrX 19240216 intron CG14196 - chrX 19240270 intron CG14196 - chrX 19240324 intron CG14196 - chrX_4_19240001 chrX_19240001 RAL-761 1603 chrX 13057298 13057299 chrX 19242812 19242813 7 6185514 1.0 0.0 0.5 4.7 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_7_16150001 chrX_16150001 RAL-761 1604 chrX 19256659 19256676 chrX 19256738 19256755 8 78 2.0 4.0 3.0 2.0 96 chrX 19256659 intron rictor - chrX 19256707 intron rictor - chrX 19256755 intron rictor - chrX_8_19255001 chrX_19255001 RAL-761 1605 chrX 19380172 19380186 chrX 19380405 19380426 pogo 6 239 2.0 2.5 2.2 1.9 254 chrX 19380172 intron kek5 + chrX 19380299 intron kek5 + chrX 19380426 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-761 1606 chrX 19472125 19472159 chrX 19472695 19472721 jockey 6 567 1.0 6.0 3.5 1.3 596 chrX 19472125 intergenic kek5 + chrX 19472423 intergenic not near genes chrX 19472721 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-761 1607 chrX 19593955 19593976 chrX 19594032 19594061 7 84 1.0 3.0 2.0 2.3 106 chrX 19593955 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594061 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-761 1608 chrX 19710079 19710104 chrX 19711865 19711890 S-element 8 1785 1.5 5.5 3.5 1.8 1811 chrX 19710079 intron meso18E - chrX 19710984 intron meso18E - chrX 19711890 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-761 1609 chrX 19756138 19756152 chrX 19756217 19756232 5 84 0.5 0.0 0.2 4.2 94 chrX 19756138 intron Pmp70 + chrX 19756185 intron Pmp70 + chrX 19756232 intron Pmp70 + chrX_5_19755001 chrX_19755001 RAL-761 1610 chrX 19822827 19822863 chrX 19822994 19823017 5 159 2.0 0.0 1.0 2.5 190 chrX 19822827 intergenic not near genes chrX 19822922 intergenic skpE - chrX 19823017 intergenic skpE - chrX_5_19820001 chrX_19820001 RAL-761 1611 chrX 20024607 20024633 chrX 20024724 20024750 6 117 2.0 3.0 2.5 1.7 143 chrX 20024607 intron Dop2R - chrX 20024678 intron Dop2R - chrX 20024750 intron Dop2R - chrX_6_20020001 chrX_20020001 RAL-761 1612 chrX 20041539 20041566 chrX 20041619 20041646 4 80 1.5 2.0 1.8 1.4 107 chrX 20041539 intron Dop2R - chrX 20041592 intron Dop2R - chrX 20041646 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-761 1613 chrX 20052788 20052806 chrX 20052872 20052872 4 79 1.5 2.0 1.8 1.4 84 chrX 20052788 intron Dop2R - chrX 20052830 intron Dop2R - chrX 20052872 intron Dop2R - chrX_4_20050001 chrX_20050001 RAL-761 1614 chrX 20262892 20262915 chrX 20263002 20263025 9 109 1.0 4.0 2.5 2.6 133 chrX 20262892 intergenic not near genes chrX 20262958 intergenic not near genes chrX 20263025 intergenic not near genes chrX_9_20260001 chrX_20260001 RAL-761 1615 chrX 20286085 20286099 chrX 20286167 20286170 4 79 1.5 0.5 1.0 2.0 85 chrX 20286085 intergenic not near genes chrX 20286128 intergenic not near genes chrX 20286170 intergenic not near genes chrX_4_20285001 chrX_20285001 RAL-761 1616 chrX 20312880 20312909 chrX 20312958 20312958 8 74 2.5 0.0 1.2 3.6 78 chrX 20312880 intron CG1504 - chrX 20312919 intron CG1504 - chrX 20312958 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-761 1617 chrX 20369322 20369334 chrX 20369405 20369418 4 83 0.5 1.0 0.8 2.2 96 chrX 20369322 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369418 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-761 1618 chrX 20377337 20377348 chrX 20378781 20378815 hobo 6 1460 2.5 4.0 3.2 1.4 1478 chrX 20377337 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-761 1619 chrX 20437368 20437393 chrX 20437935 20437966 9 570 2.0 1.5 1.8 3.2 598 chrX 20437368 intron CG1695 + chrX 20437667 intron CG1695 + chrX 20437966 intron CG1695 + chrX_9_20435001 chrX_20435001 RAL-761 1620 chrX 20499156 20499189 chrX 20499239 20499270 13 83 3.0 4.0 3.5 2.9 114 chrX 20499156 intron RhoGAP19D - chrX 20499213 intron RhoGAP19D - chrX 20499270 intron RhoGAP19D - chrX_13_20495001 chrX_20495001 RAL-761 1621 chrX 20570778 20570800 chrX 20570863 20570885 4 85 0.0 0.0 0.0 4.0 107 chrX 20570778 intergenic not near genes chrX 20570832 intergenic not near genes chrX 20570885 intergenic not near genes chrX_4_20570001 chrX_20570001 RAL-761 1622 chrX 20791361 20791388 chrX 20791431 20791465 10 69 1.5 2.0 1.8 3.6 104 chrX 20791361 intron shakB - chrX 20791413 intron shakB - chrX 20791465 intron shakB - chrX_10_20790001 chrX_20790001 RAL-761 1623 chrX 20940725 20940755 chrX 20942192 20942224 hobo 12 1465 4.0 3.5 3.8 2.5 1499 chrX 20940725 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942224 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-761 1624 chrX 21086132 21086165 chrX 21087161 21087194 jockey 8 1029 1.5 0.5 1.0 4.0 1062 chrX 21086132 intergenic not near genes chrX 21086663 intergenic not near genes chrX 21087194 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-761 1625 chrX 21467017 21467035 chrX 21467101 21467119 5 83 2.5 0.0 1.2 2.3 102 chrX 21467017 intergenic CR45507 - chrX 21467068 intergenic CR45507 - chrX 21467119 intergenic CR45507 - chrX_5_21465001 chrX_21465001 RAL-761 1626 chrX 21474402 21474435 chrX 21474768 21474801 1731 5 366 1.0 1.0 1.0 2.5 399 chrX 21474402 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474801 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-761 1627 chrX 21516987 21517020 chrX 21517065 21517099 9 75 2.0 1.0 1.5 3.6 112 chrX 21516987 intron CR45082 - chrX 21517043 intron CR45082 - chrX 21517099 intron CR45082 - chrX_9_21515001 chrX_21515001 RAL-761 1628 chrX 21565426 21565444 chrX 21565504 21565522 5 78 2.0 2.5 2.2 1.6 96 chrX 21565426 intergenic not near genes chrX 21565474 intergenic not near genes chrX 21565522 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-761 1629 chrX 21631078 21631111 chrX 21631163 21631196 8 84 1.5 4.0 2.8 2.1 118 chrX 21631078 intron CR44712 + chrX 21631137 5` UTR CR44712 + chrX 21631196 5` UTR CR44712 + chrX_8_21630001 chrX_21630001 RAL-761 1630 chrX 22492503 22492508 chrX 22492997 22492999 5 505 3.0 2.0 2.5 1.4 496 chrX 22492503 intron l(1)G0196 + chrX 22492751 intron l(1)G0196 + chrX 22492999 intron l(1)G0196 + chrX_5_22490001 chrX_22490001 RAL-761 1631 chrX 22677295 22677328 chrX 22677503 22677537 10 207 2.0 1.0 1.5 4.0 242 chrX 22677295 intron CR44997 + chrX 22677416 intron CR44997 + chrX 22677537 intron CR44997 + chrX_10_22675001 chrX_22675001 RAL-761 1632 chrX 22697500 22697523 chrX 22701790 22701817 Juan 6 4294 1.5 1.0 1.2 2.7 4317 chrX 22697500 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701817 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-761 1633 chrX 22771507 22771533 chrX 22774796 22774824 297 7 3289 2.0 0.5 1.2 3.2 3317 chrX 22771507 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774824 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-761 1634 chrX 22798784 22798801 chrX 22798889 22798917 4 113 1.5 1.5 1.5 1.6 133 chrX 22798784 intergenic not near genes chrX 22798850 intergenic not near genes chrX 22798917 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-761 1635 chrX 22922523 22922548 chrX 22922602 22922619 5 77 2.0 4.5 3.2 1.2 96 chrX 22922523 intergenic not near genes chrX 22922571 intergenic not near genes chrX 22922619 intergenic not near genes chrX_5_22920001 chrX_22920001 RAL-761 1636 chrX 22987105 22987136 chrX 22989764 22989780 Burdock 6 2656 1.5 1.5 1.5 2.4 2675 chrX 22987105 intron,intron stnA -,stnB - chrX 22988442 intron,intron stnA -,stnB - chrX 22989780 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-761 1637 chrX 22992393 22992428 chrX 22992524 22992559 11 129 1.0 1.5 1.2 5.0 166 chrX 22992393 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992559 intron,intron stnA -,stnB - chrX_11_22990001 chrX_22990001 RAL-761 1638 chrX 22996314 22996339 chrX 23003546 23003571 roo 4 7232 4.5 1.5 3.0 1.0 7257 chrX 22996314 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-761 1639 chrY 975598 975819 chrY 975702 975884 7 111 107.5 76.0 91.8 0.1 286 chrY 975598 intergenic not near genes chrY 975741 intergenic not near genes chrY 975884 intergenic not near genes chrY_7_975001 chrY_975001 RAL-761