SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47463	47485	chr2L	52567	52590	jockey	10	5105	2.5	5.5	4.0	2.0	5127	chr2L	47463	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52590	intron	Cda5 -	chr2L_10_50001	chr2L_50001	RAL-73
10	chr2L	686916	686928	chr2L	695956	695968	roo	5	9040	3.5	0.5	2.0	1.7	9052	chr2L	686916	intron	ds -	chr2L	691442	intron	ds -	chr2L	695968	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-73
12	chr2L	770473	770492	chr2L	772245	772272	Bari1	8	1778	5.5	5.5	5.5	1.2	1799	chr2L	770473	intergenic	not near genes	chr2L	771372	intergenic	not near genes	chr2L	772272	intergenic	CR44614 +	chr2L_8_770001	chr2L_770001	RAL-73
16	chr2L	976877	976899	chr2L	984513	984535	roo	5	7636	2.0	0.5	1.2	2.3	7658	chr2L	976877	intergenic	not near genes	chr2L	980706	intergenic	not near genes	chr2L	984535	intergenic	not near genes	chr2L_5_980001	chr2L_980001	RAL-73
20	chr2L	1220129	1220157	chr2L	1227595	1227623	blood	6	7466	4.5	0.5	2.5	1.7	7494	chr2L	1220129	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227623	intron	CG42329 +	chr2L_6_1220001	chr2L_1220001	RAL-73
24	chr2L	1570689	1570707	chr2L	1573561	1573579	F-element	6	2872	5.0	2.0	3.5	1.3	2890	chr2L	1570689	intron	haf +	chr2L	1572134	intron	haf +	chr2L	1573579	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-73
26	chr2L	1678979	1679008	chr2L	1686444	1686473	blood	4	7465	1.5	4.5	3.0	1.0	7494	chr2L	1678979	intron	chinmo +	chr2L	1682726	intron	chinmo +	chr2L	1686473	intron	chinmo +	chr2L_4_1680001	chr2L_1680001	RAL-73
28	chr2L	1711360	1711388	chr2L	1711684	1711712	mdg3	9	324	2.5	3.0	2.8	2.4	352	chr2L	1711360	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711536	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_9_1710001	chr2L_1710001	RAL-73
33	chr2L	2100377	2100408	chr2L	2109528	2109552	roo	16	9150	1.0	3.5	2.2	5.0	9175	chr2L	2100377	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_16_2100001	chr2L_2100001	RAL-73
34	chr2L	2112119	2112145	chr2L	2119777	2119800	opus	5	7655	1.5	3.5	2.5	1.4	7681	chr2L	2112119	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119800	intergenic	not near genes	chr2L_5_2115001	chr2L_2115001	RAL-73
40	chr2L	2661192	2661236	chr2L	2663030	2663053	I-element	10	1835	1.5	4.0	2.8	2.6	1861	chr2L	2661192	intergenic	not near genes	chr2L	2662122	intergenic	not near genes	chr2L	2663053	intergenic	not near genes	chr2L_10_2660001	chr2L_2660001	RAL-73
43	chr2L	2933314	2933332	chr2L	2935486	2935509	pogo	6	2176	4.0	4.0	4.0	1.2	2195	chr2L	2933314	intron	lilli +	chr2L	2934412	intron	lilli +	chr2L	2935509	intron	lilli +	chr2L_6_2930001	chr2L_2930001	RAL-73
44	chr2L	3073029	3073064	chr2L	3078232	3078267	copia	8	5203	1.0	2.0	1.5	3.2	5238	chr2L	3073029	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078267	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-73
47	chr2L	3251495	3251501	chr2L	3259060	3259066	springer	4	7565	4.5	3.5	4.0	0.8	7571	chr2L	3251495	intergenic	not near genes	chr2L	3255280	intergenic	not near genes	chr2L	3259066	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-73
54	chr2L	3649792	3649807	chr2L	3654994	3655009	copia	6	5202	0.0	2.0	1.0	3.0	5217	chr2L	3649792	intron	for -	chr2L	3652400	intron	for -	chr2L	3655009	intron	for -	chr2L_6_3650001	chr2L_3650001	RAL-73
64	chr2L	4601707	4601737	chr2L	4609148	4609178	mdg1	8	7441	3.5	2.0	2.8	2.1	7471	chr2L	4601707	intron	dp -	chr2L	4605442	intron	dp -	chr2L	4609178	intron	dp -	chr2L_8_4605001	chr2L_4605001	RAL-73
69	chr2L	4953517	4953535	chr2L	4953758	4953775	pogo	8	240	6.5	3.0	4.8	1.4	258	chr2L	4953517	intergenic	Jon25Bii -	chr2L	4953646	intergenic	not near genes	chr2L	4953775	intergenic	not near genes	chr2L_8_4950001	chr2L_4950001	RAL-73
79	chr2L	5827716	5827739	chr2L	5836724	5836746	roo	6	9007	4.0	3.5	3.8	1.2	9030	chr2L	5827716	intron	TrissinR +	chr2L	5832231	intron	TrissinR +	chr2L	5836746	intron	TrissinR +	chr2L_6_5830001	chr2L_5830001	RAL-73
85	chr2L	6363149	6363179	chr2L	6366071	6366101	Burdock	10	2920	1.0	1.5	1.2	4.5	2952	chr2L	6363149	intergenic	not near genes	chr2L	6364625	intergenic	not near genes	chr2L	6366101	intergenic	not near genes	chr2L_10_6360001	chr2L_6360001	RAL-73
86	chr2L	6426859	6426887	chr2L	6445119	6445147	roo	9	18260	1.5	2.5	2.0	3.0	18288	chr2L	6426859	3` UTR	CG9527 -	chr2L	6436003	intron	CG9527 -	chr2L	6445147	exon	CG9527 -	chr2L_9_6435001	chr2L_6435001	RAL-73
98	chr2L	7343323	7343359	chr2L	7350439	7350475	roo	9	7116	3.0	3.5	3.2	2.1	7152	chr2L	7343323	intron	Wnt6 +	chr2L	7346899	intron	Wnt6 +	chr2L	7350475	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	RAL-73
104	chr2L	7959040	7959058	chr2L	7960451	7960469	pogo	4	1411	4.5	0.0	2.2	1.2	1429	chr2L	7959040	intron	Snoo -	chr2L	7959754	intron	Snoo -	chr2L	7960469	intron	Snoo -	chr2L_4_7955001	chr2L_7955001	RAL-73
105	chr2L	7977089	7977112	chr2L	7984065	7984088	297	6	6976	1.0	1.0	1.0	3.0	6999	chr2L	7977089	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984088	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-73
106	chr2L	8013611	8013629	chr2L	8018815	8018833	copia	4	5204	2.5	0.0	1.2	1.8	5222	chr2L	8013611	intron	Tg +	chr2L	8016222	intron	Tg +	chr2L	8018833	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-73
114	chr2L	8723114	8723146	chr2L	8731491	8731523	Tirant	4	8377	1.0	2.5	1.8	1.4	8409	chr2L	8723114	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731523	intron	raw -	chr2L_4_8725001	chr2L_8725001	RAL-73
121	chr2L	9000278	9000307	chr2L	9007788	9007816	roo	6	7510	5.5	3.0	4.2	1.2	7538	chr2L	9000278	intergenic	Try29F +	chr2L	9004047	intergenic	not near genes	chr2L	9007816	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-73
130	chr2L	9393498	9393529	chr2L	9396465	9396496	jockey	7	2967	1.5	2.0	1.8	2.5	2998	chr2L	9393498	intron	Shawl -	chr2L	9394997	intron	Shawl -	chr2L	9396496	intron	Shawl -	chr2L_7_9390001	chr2L_9390001	RAL-73
136	chr2L	9973731	9973755	chr2L	9980850	9980874	HMS-Beagle	16	7118	6.0	3.5	4.8	2.8	7143	chr2L	9973731	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980874	intergenic	not near genes	chr2L_16_9975001	chr2L_9975001	RAL-73
139	chr2L	10156330	10156354	chr2L	10163800	10163824	blood	9	7470	2.0	2.0	2.0	3.0	7494	chr2L	10156330	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160077	intron	CG44153 -	chr2L	10163824	intron	CG44153 -	chr2L_9_10160001	chr2L_10160001	RAL-73
147	chr2L	10862844	10862873	chr2L	10864457	10864487	Rt1c	14	1612	6.0	3.5	4.8	2.4	1643	chr2L	10862844	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864487	3` UTR	CR43807 -	chr2L_14_10860001	chr2L_10860001	RAL-73
149	chr2L	10946951	10946977	chr2L	10956166	10956192	roo	15	9215	0.5	9.0	4.8	2.6	9241	chr2L	10946951	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_15_10950001	chr2L_10950001	RAL-73
152	chr2L	11563635	11563669	chr2L	11568839	11568873	copia	11	5204	1.5	0.5	1.0	5.5	5238	chr2L	11563635	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568873	intergenic	not near genes	chr2L_11_11565001	chr2L_11565001	RAL-73
153	chr2L	11614050	11614081	chr2L	11615545	11615576	hopper2	8	1492	3.5	1.0	2.2	2.5	1526	chr2L	11614050	intron	kek2 +	chr2L	11614813	intron	kek2 +	chr2L	11615576	intron	kek2 +	chr2L_8_11610001	chr2L_11610001	RAL-73
156	chr2L	11713506	11713540	chr2L	11720973	11721008	blood	8	7468	1.0	2.0	1.5	3.2	7502	chr2L	11713506	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_8_11715001	chr2L_11715001	RAL-73
162	chr2L	12731060	12731093	chr2L	12735827	12735860	F-element	5	4767	1.0	2.0	1.5	2.0	4800	chr2L	12731060	intron	MRP +	chr2L	12733460	intron	MRP +	chr2L	12735860	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-73
165	chr2L	12861693	12861729	chr2L	12863160	12863196	hobo	13	1466	1.5	4.5	3.0	3.2	1503	chr2L	12861693	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_13_12860001	chr2L_12860001	RAL-73
166	chr2L	12894020	12894051	chr2L	12895486	12895507	hobo	8	1457	6.0	6.0	6.0	1.1	1487	chr2L	12894020	intergenic	not near genes	chr2L	12894764	intergenic	not near genes	chr2L	12895507	intergenic	not near genes	chr2L_8_12890001	chr2L_12890001	RAL-73
167	chr2L	12933848	12933880	chr2L	12941315	12941347	blood	7	7467	5.5	3.0	4.2	1.3	7499	chr2L	12933848	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941347	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	RAL-73
174	chr2L	13405648	13405674	chr2L	13410445	13410471	Doc	7	4796	3.0	0.0	1.5	2.8	4823	chr2L	13405648	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410471	intron	CG7110 +	chr2L_7_13405001	chr2L_13405001	RAL-73
181	chr2L	13761819	13761831	chr2L	13762930	13762941	Doc	6	1111	4.5	2.5	3.5	1.3	1122	chr2L	13761819	intron	TM9SF4 +	chr2L	13762380	intron	TM9SF4 +	chr2L	13762941	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-73
182	chr2L	13853084	13853097	chr2L	13862233	13862247	roo	5	9150	4.0	0.5	2.2	1.6	9163	chr2L	13853084	intron	CenG1A +	chr2L	13857666	intron	CenG1A +	chr2L	13862247	intron	CenG1A +	chr2L_5_13855001	chr2L_13855001	RAL-73
185	chr2L	14642574	14642587	chr2L	14651737	14651748	roo	5	9163	4.0	1.5	2.8	1.3	9174	chr2L	14642574	intron	osp -	chr2L	14647161	intron	osp -	chr2L	14651748	intron	osp -	chr2L_5_14645001	chr2L_14645001	RAL-73
187	chr2L	14803878	14803907	chr2L	14809081	14809110	copia	9	5203	2.5	1.0	1.8	3.2	5232	chr2L	14803878	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809110	intergenic	not near genes	chr2L_9_14805001	chr2L_14805001	RAL-73
189	chr2L	14889955	14889986	chr2L	14890380	14890411	jockey	4	425	2.5	4.5	3.5	0.9	456	chr2L	14889955	intergenic	not near genes	chr2L	14890183	intergenic	not near genes	chr2L	14890411	intergenic	not near genes	chr2L_4_14890001	chr2L_14890001	RAL-73
193	chr2L	15586408	15586441	chr2L	15593460	15593493	297	6	7052	1.5	1.0	1.2	2.7	7085	chr2L	15586408	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593493	intergenic	not near genes	chr2L_6_15585001	chr2L_15585001	RAL-73
194	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	9	145889	19.0	9.0	14.0	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_9_16140001	chr2L_16140001	RAL-73
195	chr2L	16141171	16141188	chr2L	16146378	16146395	copia	7	5207	0.5	1.0	0.8	3.9	5224	chr2L	16141171	intergenic	not near genes	chr2L	16143783	intergenic	not near genes	chr2L	16146395	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-73
198	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	19.0	9.0	14.0	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-73
199	chr2L	16280256	16280284	chr2L	16281425	16281455	1360	11	1171	2.5	3.0	2.8	2.9	1199	chr2L	16280256	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281455	intron	crp -	chr2L_11_16280001	chr2L_16280001	RAL-73
208	chr2L	17273190	17273215	chr2L	17277973	17277995	F-element	9	4782	5.5	2.5	4.0	1.8	4805	chr2L	17273190	intergenic	not near genes	chr2L	17275592	intergenic	not near genes	chr2L	17277995	intergenic	not near genes	chr2L_9_17275001	chr2L_17275001	RAL-73
212	chr2L	17819921	17819945	chr2L	17825124	17825147	copia	4	5203	0.5	3.0	1.8	1.4	5226	chr2L	17819921	intron	CadN2 -	chr2L	17822534	intron	CadN2 -	chr2L	17825147	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-73
213	chr2L	17911962	17911979	chr2L	17914148	17914165	pogo	4	2186	4.5	1.0	2.8	1.1	2203	chr2L	17911962	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914165	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-73
215	chr2L	18051880	18051909	chr2L	18061027	18061034	roo	5	9142	3.0	0.5	1.8	1.8	9154	chr2L	18051880	intron	rdo +	chr2L	18056457	intron	rdo +	chr2L	18061034	intron	rdo +	chr2L_5_18055001	chr2L_18055001	RAL-73
229	chr2L	19345013	19345047	chr2L	19357222	19357253	blood	5	12208	0.5	3.0	1.8	1.8	12240	chr2L	19345013	intron	dnt -	chr2L	19351133	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-73
234	chr2L	19620092	19620131	chr2L	19621081	19621120	jockey	21	988	3.5	4.5	4.0	4.2	1028	chr2L	19620092	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621120	intron	Lar +	chr2L_21_19620001	chr2L_19620001	RAL-73
236	chr2L	19703535	19703569	chr2L	19712671	19712705	roo	11	9136	2.5	0.5	1.5	4.4	9170	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_11_19705001	chr2L_19705001	RAL-73
253	chr2L	20568661	20568687	chr2L	20569051	20569076	X-element	7	390	2.5	3.5	3.0	1.8	415	chr2L	20568661	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569076	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RAL-73
254	chr2L	20576223	20576252	chr2L	20583691	20583720	blood	5	7468	2.5	1.0	1.8	1.8	7497	chr2L	20576223	intergenic	not near genes	chr2L	20579972	intergenic	not near genes	chr2L	20583720	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-73
262	chr2L	21020275	21020309	chr2L	21023952	21023986	NOF	11	3676	1.5	3.5	2.5	3.1	3711	chr2L	21020275	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_11_21020001	chr2L_21020001	RAL-73
265	chr2L	21981684	21981715	chr2L	21990848	21990880	roo	10	9165	2.0	3.5	2.8	2.6	9196	chr2L	21981684	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_10_21985001	chr2L_21985001	RAL-73
268	chr2R	529331	529357	chr2R	537954	537981	Max-element	5	8623	1.5	1.0	1.2	2.3	8650	chr2R	529331	intron	CG40378 +	chr2R	533656	intron	CG40378 +	chr2R	537981	intron	CG40378 +	chr2R_5_530001	chr2R_530001	RAL-73
269	chr2R	1082373	1082381	chr2R	1087149	1087157	Doc	4	4776	4.5	4.5	4.5	0.7	4784	chr2R	1082373	intron	rl +	chr2R	1084765	intron	rl +	chr2R	1087157	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-73
274	chr2R	4622955	4622983	chr2R	4624114	4624142	1360	6	1159	2.5	2.0	2.2	1.9	1187	chr2R	4622955	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624142	intergenic	not near genes	chr2R_6_4620001	chr2R_4620001	RAL-73
275	chr2R	4624646	4624664	chr2R	4626551	4626569	Bica	5	1905	4.0	4.5	4.2	1.0	1923	chr2R	4624646	intergenic	not near genes	chr2R	4625608	intergenic	not near genes	chr2R	4626569	intergenic	not near genes	chr2R_5_4625001	chr2R_4625001	RAL-73
285	chr2R	5869281	5869305	chr2R	5874357	5874381	flea	4	5076	0.5	0.0	0.2	3.3	5100	chr2R	5869281	intergenic	not near genes	chr2R	5871831	intergenic	not near genes	chr2R	5874381	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-73
287	chr2R	6096723	6096746	chr2R	6101918	6101944	BS	8	5194	7.0	3.5	5.2	1.3	5221	chr2R	6096723	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101944	intron	EcR -	chr2R_8_6095001	chr2R_6095001	RAL-73
300	chr2R	7235820	7235853	chr2R	7240912	7240935	jockey	8	5091	1.5	3.5	2.5	2.3	5115	chr2R	7235820	intergenic	not near genes	chr2R	7238378	intergenic	not near genes	chr2R	7240935	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-73
305	chr2R	7815672	7815701	chr2R	7822140	7822170	Burdock	5	6469	2.5	3.5	3.0	1.2	6498	chr2R	7815672	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822170	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-73
306	chr2R	7869186	7869216	chr2R	7873972	7874001	Doc	8	4786	3.0	3.5	3.2	1.9	4815	chr2R	7869186	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7874001	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	RAL-73
312	chr2R	8330860	8330890	chr2R	8331346	8331376	roo	7	486	2.0	1.5	1.8	2.5	516	chr2R	8330860	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331376	intron	pdm3 +	chr2R_7_8330001	chr2R_8330001	RAL-73
313	chr2R	8398233	8398244	chr2R	8402997	8403025	Doc	4	4777	4.0	2.5	3.2	1.0	4792	chr2R	8398233	intron	CG2121 -	chr2R	8400629	intron	CG2121 -	chr2R	8403025	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-73
315	chr2R	8566046	8566064	chr2R	8567255	8567273	1360	4	1209	0.5	2.0	1.2	1.8	1227	chr2R	8566046	5` UTR	Cyp6a14 -	chr2R	8566660	5` UTR	Cyp6a14 -	chr2R	8567273	intergenic	Cyp6a14 -	chr2R_4_8565001	chr2R_8565001	RAL-73
318	chr2R	8722763	8722793	chr2R	8723004	8723034	pogo	16	240	2.0	2.5	2.2	5.0	271	chr2R	8722763	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723034	intron	CG14767 -	chr2R_16_8720001	chr2R_8720001	RAL-73
324	chr2R	9151316	9151328	chr2R	9157786	9157798	Burdock	5	6470	2.0	0.5	1.2	2.3	6482	chr2R	9151316	3` UTR	CG30345 +	chr2R	9154557	intergenic	not near genes	chr2R	9157798	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	RAL-73
325	chr2R	9212691	9212720	chr2R	9213177	9213206	roo	8	484	4.5	4.5	4.5	1.5	515	chr2R	9212691	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213206	5` UTR	CR45309 +	chr2R_8_9210001	chr2R_9210001	RAL-73
332	chr2R	9945436	9945465	chr2R	9945632	9945661	BS	7	193	4.0	2.0	3.0	1.8	225	chr2R	9945436	intron	Mef2 -	chr2R	9945548	intron	Mef2 -	chr2R	9945661	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-73
335	chr2R	10005850	10005883	chr2R	10007014	10007037	1360	11	1163	1.5	3.0	2.2	3.4	1187	chr2R	10005850	intron	Pka-R2 -	chr2R	10006444	intron	Pka-R2 -	chr2R	10007037	intron	Pka-R2 -	chr2R_11_10005001	chr2R_10005001	RAL-73
351	chr2R	10585577	10585591	chr2R	10594158	10594174	Tirant	4	8582	0.0	4.0	2.0	1.3	8597	chr2R	10585577	intron	psq +	chr2R	10589876	intron	psq +	chr2R	10594174	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-73
360	chr2R	10948025	10948062	chr2R	10955575	10955613	17.6	12	7550	1.5	5.0	3.2	2.9	7588	chr2R	10948025	intergenic	not near genes	chr2R	10951819	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_12_10950001	chr2R_10950001	RAL-73
361	chr2R	11019878	11019889	chr2R	11024944	11024954	jockey	6	5066	4.0	5.0	4.5	1.1	5076	chr2R	11019878	intron	luna -	chr2R	11022416	intron	luna -	chr2R	11024954	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-73
362	chr2R	11019891	11019907	chr2R	11024941	11024941	jockey	5	5056	3.0	4.0	3.5	1.1	5050	chr2R	11019891	intron	luna -	chr2R	11022416	intron	luna -	chr2R	11024941	intron	luna -	chr2R_5_11020001	chr2R_11020001	RAL-73
364	chr2R	11207813	11207847	chr2R	11208005	11208039	BS	7	192	1.0	0.5	0.8	3.9	226	chr2R	11207813	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208039	intron	shn +	chr2R_7_11205001	chr2R_11205001	RAL-73
366	chr2R	11472648	11472680	chr2R	11473845	11473877	pogo	8	1197	2.0	1.5	1.8	2.9	1229	chr2R	11472648	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_8_11470001	chr2R_11470001	RAL-73
377	chr2R	12481139	12481170	chr2R	12482942	12482974	roo	11	1799	3.0	3.0	3.0	2.8	1835	chr2R	12481139	exon	Dh44-R2 +	chr2R	12482056	intron	Dh44-R2 +	chr2R	12482974	intron	Dh44-R2 +	chr2R_11_12480001	chr2R_12480001	RAL-73
378	chr2R	12501713	12501727	chr2R	12503850	12503889	Rt1c	6	2153	1.0	3.0	2.0	2.0	2176	chr2R	12501713	intron	fdl -	chr2R	12502801	intron	fdl -	chr2R	12503889	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-73
383	chr2R	12789297	12789321	chr2R	12797660	12797684	roo	4	8363	1.5	3.5	2.5	1.1	8387	chr2R	12789297	intron,3` UTR	sca +,CR45137 -	chr2R	12793490	intron,intron	sca +,CR45137 -	chr2R	12797684	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-73
384	chr2R	12819451	12819478	chr2R	12824520	12824547	jockey	9	5068	1.5	2.0	1.8	3.2	5096	chr2R	12819451	intergenic	not near genes	chr2R	12821999	intergenic	not near genes	chr2R	12824547	intergenic	not near genes	chr2R_9_12820001	chr2R_12820001	RAL-73
388	chr2R	13136838	13136859	chr2R	13141636	13141656	Doc	10	4798	4.5	5.5	5.0	1.7	4818	chr2R	13136838	exon	Cap-G +	chr2R	13139247	intron	Cap-G +	chr2R	13141656	intron	Cap-G +	chr2R_10_13135001	chr2R_13135001	RAL-73
405	chr2R	14467291	14467324	chr2R	14476443	14476476	roo	12	9151	2.5	2.5	2.5	3.4	9185	chr2R	14467291	intergenic	not near genes	chr2R	14471884	intergenic	not near genes	chr2R	14476476	5` UTR	CR44462 +	chr2R_12_14470001	chr2R_14470001	RAL-73
412	chr2R	15015454	15015488	chr2R	15022878	15022912	mdg1	8	7423	1.5	2.0	1.8	2.9	7458	chr2R	15015454	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022912	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-73
415	chr2R	15084982	15084999	chr2R	15092031	15092048	297	4	7049	3.5	0.5	2.0	1.3	7066	chr2R	15084982	intergenic	not near genes	chr2R	15088515	intergenic	not near genes	chr2R	15092048	5` UTR	CR44457 +	chr2R_4_15085001	chr2R_15085001	RAL-73
416	chr2R	15119317	15119351	chr2R	15127797	15127822	Tirant	7	8479	5.0	3.0	4.0	1.4	8505	chr2R	15119317	intron	chn +	chr2R	15123570	intron	chn +	chr2R	15127822	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-73
430	chr2R	17236508	17236542	chr2R	17241712	17241743	copia	9	5204	1.5	3.0	2.2	2.8	5235	chr2R	17236508	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_9_17235001	chr2R_17235001	RAL-73
437	chr2R	17784026	17784052	chr2R	17784265	17784292	pogo	4	240	0.0	4.0	2.0	1.3	266	chr2R	17784026	intergenic	mir-31a -	chr2R	17784159	intergenic	mir-31a -	chr2R	17784292	intergenic	mir-31a -	chr2R_4_17780001	chr2R_17780001	RAL-73
440	chr2R	18358400	18358422	chr2R	18372612	18372634	roo	4	14212	1.0	1.5	1.2	1.8	14234	chr2R	18358400	intergenic	not near genes	chr2R	18365517	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_4_18365001	chr2R_18365001	RAL-73
445	chr2R	18575797	18575831	chr2R	18581985	18582019	3S18	4	6188	2.0	2.5	2.2	1.2	6222	chr2R	18575797	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-73
446	chr2R	18590870	18590897	chr2R	18600022	18600048	roo	10	9152	4.0	2.5	3.2	2.4	9178	chr2R	18590870	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600048	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	RAL-73
455	chr2R	19776594	19776625	chr2R	19779916	19779948	jockey	4	3323	1.5	0.5	1.0	2.0	3354	chr2R	19776594	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779948	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	RAL-73
456	chr2R	19957440	19957464	chr2R	19962640	19962664	copia	11	5202	2.0	4.5	3.2	2.6	5224	chr2R	19957440	intergenic	CG44623 +	chr2R	19960052	intergenic	not near genes	chr2R	19962664	intergenic	not near genes	chr2R_11_19960001	chr2R_19960001	RAL-73
458	chr2R	20069242	20069273	chr2R	20071872	20071903	opus	5	2630	2.0	0.5	1.2	2.3	2661	chr2R	20069242	intergenic	not near genes	chr2R	20070572	intergenic	not near genes	chr2R	20071903	intergenic	not near genes	chr2R_5_20070001	chr2R_20070001	RAL-73
467	chr2R	20739460	20739479	chr2R	20744228	20744247	F-element	7	4768	1.5	6.5	4.0	1.4	4787	chr2R	20739460	intron	dpr +	chr2R	20741854	intron	dpr +	chr2R	20744247	intron	dpr +	chr2R_7_20740001	chr2R_20740001	RAL-73
468	chr2R	20783312	20783333	chr2R	20788084	20788105	F-element	4	4772	0.5	2.5	1.5	1.6	4793	chr2R	20783312	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-73
478	chr2R	21738276	21738285	chr2R	21747436	21747445	roo	6	9159	7.5	3.5	5.5	0.9	9169	chr2R	21738276	intergenic	not near genes	chr2R	21742860	intergenic	not near genes	chr2R	21747445	intergenic	not near genes	chr2R_6_21740001	chr2R_21740001	RAL-73
479	chr2R	21753088	21753117	chr2R	21753573	21753602	roo	7	485	1.5	1.0	1.2	3.2	514	chr2R	21753088	intergenic	not near genes	chr2R	21753345	intergenic	not near genes	chr2R	21753602	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-73
493	chr2R	22349695	22349722	chr2R	22351479	22351505	jockey	8	1784	2.5	3.0	2.8	2.1	1810	chr2R	22349695	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351505	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-73
494	chr2R	22360383	22360393	chr2R	22360816	22360826	jockey	7	432	2.0	1.5	1.8	2.5	443	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360826	intron	Liprin-gamma -	chr2R_7_22360001	chr2R_22360001	RAL-73
496	chr2R	22525758	22525773	chr2R	22529317	22529332	jockey	4	3558	1.5	1.5	1.5	1.6	3574	chr2R	22525758	intron	px -	chr2R	22527545	intron	px -	chr2R	22529332	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-73
500	chr2R	22729461	22729468	chr2R	22729669	22729676	INE-1	6	208	4.0	3.0	3.5	1.3	215	chr2R	22729461	intron	jbug -	chr2R	22729568	intron	jbug -	chr2R	22729676	intron	jbug -	chr2R_6_22725001	chr2R_22725001	RAL-73
514	chr2R	23529574	23529598	chr2R	23537150	23537168	412	11	7573	7.5	6.0	6.8	1.4	7594	chr2R	23529574	intron	bw -	chr2R	23533371	intron	bw -	chr2R	23537168	exon	bw -	chr2R_11_23530001	chr2R_23530001	RAL-73
515	chr2R	23529601	23529607	chr2R	23537149	23537182	412	4	7556	5.5	5.5	5.5	0.6	7581	chr2R	23529601	exon	bw -	chr2R	23533392	intron	bw -	chr2R	23537182	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-73
525	chr2R	24353427	24353461	chr2R	24361789	24361823	roo	7	8362	1.5	1.5	1.5	2.8	8396	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357625	intron,intron	bs +,CR44811 -	chr2R	24361823	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-73
532	chr2R	24727882	24727916	chr2R	24735390	24735423	mdg1	9	7508	4.0	3.5	3.8	1.9	7541	chr2R	24727882	intron	Mid1 -	chr2R	24731652	intron	Mid1 -	chr2R	24735423	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	RAL-73
533	chr2R	24763609	24763638	chr2R	24765584	24765599	G2	13	1974	4.5	4.5	4.5	2.4	1990	chr2R	24763609	exon	CG3894 +	chr2R	24764604	intron	CG3894 +	chr2R	24765599	exon	CG3894 +	chr2R_13_24760001	chr2R_24760001	RAL-73
542	chr3L	402688	402711	chr3L	409741	409764	297	9	7053	8.5	5.5	7.0	1.1	7076	chr3L	402688	intergenic	not near genes	chr3L	406226	intergenic	not near genes	chr3L	409764	intergenic	not near genes	chr3L_9_405001	chr3L_405001	RAL-73
546	chr3L	789919	789933	chr3L	790404	790418	roo	6	485	2.0	1.5	1.8	2.1	499	chr3L	789919	intergenic	not near genes	chr3L	790168	intergenic	not near genes	chr3L	790418	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-73
548	chr3L	857997	858028	chr3L	866478	866491	Tirant	13	8477	2.5	3.5	3.0	3.2	8494	chr3L	857997	intergenic	not near genes	chr3L	862244	intergenic	not near genes	chr3L	866491	intergenic	CG12502 +	chr3L_13_860001	chr3L_860001	RAL-73
550	chr3L	939772	939802	chr3L	940893	940923	jockey	8	1121	4.0	2.5	3.2	1.9	1151	chr3L	939772	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940923	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RAL-73
555	chr3L	1219596	1219622	chr3L	1227329	1227355	412	11	7733	1.5	4.0	2.8	2.9	7759	chr3L	1219596	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227355	intron	mwh +	chr3L_11_1220001	chr3L_1220001	RAL-73
565	chr3L	1506001	1506021	chr3L	1513598	1513618	17.6	7	7597	4.0	3.5	3.8	1.5	7617	chr3L	1506001	intron,intron	Psa +,cue -	chr3L	1509810	intron,intron	Psa +,cue -	chr3L	1513618	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-73
579	chr3L	2447512	2447533	chr3L	2456662	2456689	roo	8	9152	2.0	5.0	3.5	1.8	9177	chr3L	2447512	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456689	intron	CG45186 +	chr3L_8_2450001	chr3L_2450001	RAL-73
584	chr3L	3061301	3061317	chr3L	3069874	3069900	Tirant	5	8581	4.0	2.0	3.0	1.2	8599	chr3L	3061301	intron	CG32486 -	chr3L	3065600	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	RAL-73
587	chr3L	3281445	3281456	chr3L	3281935	3281952	Doc	4	494	6.5	9.0	7.8	0.5	507	chr3L	3281445	intron	CG12017 +	chr3L	3281698	intron	CG12017 +	chr3L	3281952	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-73
588	chr3L	3281459	3281468	chr3L	3281933	3281964	Doc	4	490	4.5	9.0	6.8	0.5	505	chr3L	3281459	intron	CG12017 +	chr3L	3281712	intron	CG12017 +	chr3L	3281964	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-73
591	chr3L	3475077	3475110	chr3L	3475521	3475554	jockey	10	444	2.5	3.5	3.0	2.5	477	chr3L	3475077	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	RAL-73
595	chr3L	3601296	3601327	chr3L	3606607	3606637	copia	8	5311	2.0	1.0	1.5	3.2	5341	chr3L	3601296	intron	Eip63E +	chr3L	3603966	intron	Eip63E +	chr3L	3606637	intron	Eip63E +	chr3L_8_3600001	chr3L_3600001	RAL-73
605	chr3L	4901142	4901156	chr3L	4907332	4907346	diver	4	6190	2.0	1.5	1.8	1.4	6204	chr3L	4901142	intergenic	CG13704 +	chr3L	4904244	intergenic	not near genes	chr3L	4907346	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-73
608	chr3L	5045464	5045474	chr3L	5050245	5050255	Doc	4	4781	0.5	0.0	0.2	3.3	4791	chr3L	5045464	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050255	intron	Con -	chr3L_4_5045001	chr3L_5045001	RAL-73
617	chr3L	5926328	5926351	chr3L	5926508	5926509	BS	4	179	4.5	4.5	4.5	0.7	181	chr3L	5926328	intron	Vap-33B +	chr3L	5926418	intron	Vap-33B +	chr3L	5926509	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	RAL-73
620	chr3L	6220913	6220946	chr3L	6230065	6230098	roo	5	9152	2.5	4.0	3.2	1.2	9185	chr3L	6220913	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230098	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-73
622	chr3L	6855935	6855950	chr3L	6860719	6860731	Doc	5	4783	3.0	5.0	4.0	1.0	4796	chr3L	6855935	intergenic	not near genes	chr3L	6858333	intergenic	not near genes	chr3L	6860731	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-73
624	chr3L	6887520	6887541	chr3L	6895012	6895033	roo	4	7492	2.0	1.5	1.8	1.4	7513	chr3L	6887520	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895033	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	RAL-73
630	chr3L	7377316	7377341	chr3L	7380421	7380446	297	6	3105	0.0	2.5	1.2	2.7	3130	chr3L	7377316	intron	SMSr -	chr3L	7378881	intron	SMSr -	chr3L	7380446	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	RAL-73
643	chr3L	8498295	8498330	chr3L	8505762	8505797	blood	4	7466	1.0	1.0	1.0	2.0	7502	chr3L	8498295	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505797	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-73
648	chr3L	8791278	8791289	chr3L	8796698	8796709	I-element	4	5420	6.5	0.0	3.2	1.0	5431	chr3L	8791278	exon	Fhos +	chr3L	8793994	intron	Fhos +	chr3L	8796709	intron	Fhos +	chr3L_4_8790001	chr3L_8790001	RAL-73
651	chr3L	9076925	9076954	chr3L	9084485	9084514	412	11	7560	3.0	3.0	3.0	2.8	7589	chr3L	9076925	exon	Tequila +	chr3L	9080720	intron	Tequila +	chr3L	9084514	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-73
652	chr3L	9130561	9130582	chr3L	9134322	9134343	412	13	3761	5.0	2.0	3.5	2.9	3782	chr3L	9130561	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_13_9130001	chr3L_9130001	RAL-73
653	chr3L	9219244	9219276	chr3L	9219913	9219948	jockey	10	671	3.5	2.5	3.0	2.5	704	chr3L	9219244	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219948	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-73
655	chr3L	9533759	9533777	chr3L	9541318	9541318	412	5	7552	6.0	5.0	5.5	0.8	7559	chr3L	9533759	intergenic	not near genes	chr3L	9537538	intergenic	not near genes	chr3L	9541318	intergenic	not near genes	chr3L_5_9535001	chr3L_9535001	RAL-73
657	chr3L	9575919	9575936	chr3L	9580997	9581014	jockey	6	5077	5.0	3.0	4.0	1.2	5095	chr3L	9575919	intron	CG42673 +	chr3L	9578466	intron	CG42673 +	chr3L	9581014	intron	CG42673 +	chr3L_6_9575001	chr3L_9575001	RAL-73
668	chr3L	10414952	10414975	chr3L	10417324	10417347	Doc	6	2370	0.5	3.0	1.8	2.1	2395	chr3L	10414952	intergenic	CG12362 +	chr3L	10416150	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_6_10415001	chr3L_10415001	RAL-73
672	chr3L	11087058	11087088	chr3L	11088846	11088877	S-element	5	1788	1.5	0.5	1.0	2.5	1819	chr3L	11087058	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-73
675	chr3L	11329700	11329724	chr3L	11332896	11332929	jockey	5	3203	2.5	3.5	3.0	1.2	3229	chr3L	11329700	intergenic	not near genes	chr3L	11331314	intergenic	not near genes	chr3L	11332929	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-73
676	chr3L	11564794	11564807	chr3L	11572404	11572432	412	7	7622	6.0	5.5	5.8	1.0	7638	chr3L	11564794	exon	CG33267 +	chr3L	11568613	intron	CG33267 +	chr3L	11572432	exon	CG33267 +	chr3L_7_11565001	chr3L_11565001	RAL-73
682	chr3L	11864554	11864568	chr3L	11865849	11865863	pogo	4	1294	5.5	1.0	3.2	1.0	1309	chr3L	11864554	intron	CG44837 -	chr3L	11865208	intron	CG44837 -	chr3L	11865863	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-73
703	chr3L	14245567	14245587	chr3L	14245661	14245681	1360	5	94	7.5	1.5	4.5	0.9	114	chr3L	14245567	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245681	3` UTR	CR44561 -	chr3L_5_14245001	chr3L_14245001	RAL-73
707	chr3L	14295991	14296012	chr3L	14296467	14296498	roo	7	485	4.0	1.0	2.5	2.0	507	chr3L	14295991	intron	fz +	chr3L	14296244	intron	fz +	chr3L	14296498	intron	fz +	chr3L_7_14295001	chr3L_14295001	RAL-73
708	chr3L	14312026	14312036	chr3L	14316839	14316849	X-element	4	4814	2.5	2.5	2.5	1.1	4823	chr3L	14312026	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316849	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-73
709	chr3L	14312037	14312058	chr3L	14316835	14316849	X-element	6	4805	0.5	2.0	1.2	2.7	4812	chr3L	14312037	exon	fz +	chr3L	14314443	intron	fz +	chr3L	14316849	intron	fz +	chr3L_6_14310001	chr3L_14310001	RAL-73
715	chr3L	14721183	14721209	chr3L	14723026	14723052	Rt1c	15	1843	4.5	4.5	4.5	2.7	1869	chr3L	14721183	intron	ome +	chr3L	14722118	intron	ome +	chr3L	14723052	intron	ome +	chr3L_15_14720001	chr3L_14720001	RAL-73
724	chr3L	15899225	15899240	chr3L	15899792	15899806	jockey	5	566	5.5	2.5	4.0	1.0	581	chr3L	15899225	intergenic	pHCl -	chr3L	15899516	intergenic	pHCl -	chr3L	15899806	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	RAL-73
725	chr3L	15899243	15899259	chr3L	15899788	15899811	jockey	5	557	2.5	2.5	2.5	1.4	568	chr3L	15899243	intergenic	pHCl -	chr3L	15899527	intergenic	pHCl -	chr3L	15899811	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	RAL-73
729	chr3L	16443850	16443876	chr3L	16446190	16446216	Doc	6	2340	0.5	2.5	1.5	2.4	2366	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446216	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-73
730	chr3L	16493978	16494008	chr3L	16494495	16494525	jockey	6	517	4.0	3.0	3.5	1.3	547	chr3L	16493978	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494525	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_6_16490001	chr3L_16490001	RAL-73
736	chr3L	16945726	16945760	chr3L	16954879	16954912	roo	11	9151	6.0	0.5	3.2	2.6	9186	chr3L	16945726	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954912	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-73
737	chr3L	17085003	17085030	chr3L	17094151	17094179	roo	7	9149	1.0	0.0	0.5	4.7	9176	chr3L	17085003	intron	Rbp6 -	chr3L	17089591	intron	Rbp6 -	chr3L	17094179	intron	Rbp6 -	chr3L_7_17085001	chr3L_17085001	RAL-73
742	chr3L	17516978	17517004	chr3L	17524536	17524562	412	6	7557	2.5	5.0	3.8	1.2	7584	chr3L	17516978	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524562	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-73
756	chr3L	18772413	18772442	chr3L	18781094	18781123	roo	5	8681	1.0	2.0	1.5	2.0	8710	chr3L	18772413	intron	ftz-f1 -	chr3L	18776768	intron	ftz-f1 -	chr3L	18781123	intron	ftz-f1 -	chr3L_5_18775001	chr3L_18775001	RAL-73
757	chr3L	18833780	18833801	chr3L	18834941	18834965	1360	6	1163	1.0	0.0	0.5	4.0	1185	chr3L	18833780	intron	Indy -	chr3L	18834372	intron	Indy -	chr3L	18834965	intron	Indy -	chr3L_6_18830001	chr3L_18830001	RAL-73
760	chr3L	19115643	19115661	chr3L	19115818	19115839	BS	5	177	3.5	2.0	2.8	1.3	196	chr3L	19115643	intron	CG14082 -	chr3L	19115741	intron	CG14082 -	chr3L	19115839	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RAL-73
761	chr3L	19117040	19117071	chr3L	19124487	19124518	mdg1	11	7447	3.0	0.5	1.8	3.9	7478	chr3L	19117040	intron	CG14082 -	chr3L	19120779	intron	CG14082 -	chr3L	19124518	intron	CG14082 -	chr3L_11_19120001	chr3L_19120001	RAL-73
764	chr3L	19208056	19208092	chr3L	19209430	19209466	Doc	14	1374	1.5	2.0	1.8	5.0	1410	chr3L	19208056	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209466	intron	fz2 -	chr3L_14_19205001	chr3L_19205001	RAL-73
769	chr3L	20257347	20257361	chr3L	20258467	20258481	pogo	6	1120	1.0	2.5	1.8	2.1	1134	chr3L	20257347	intron	rdgC +	chr3L	20257914	intron	rdgC +	chr3L	20258481	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-73
772	chr3L	20487663	20487674	chr3L	20488114	20488125	INE-1	4	451	4.5	2.0	3.2	1.0	462	chr3L	20487663	intron	ZnT77C -	chr3L	20487894	intron	ZnT77C -	chr3L	20488125	intron	ZnT77C -	chr3L_4_20485001	chr3L_20485001	RAL-73
776	chr3L	21014916	21014944	chr3L	21023397	21023424	Tirant	12	8476	6.0	3.5	4.8	2.1	8508	chr3L	21014916	intron	skd -	chr3L	21019170	intron	skd -	chr3L	21023424	intron	skd -	chr3L_12_21015001	chr3L_21015001	RAL-73
777	chr3L	21151864	21151881	chr3L	21156948	21156965	flea	4	5084	4.5	1.0	2.8	1.1	5101	chr3L	21151864	intron	Ac78C -	chr3L	21154414	intron	Ac78C -	chr3L	21156965	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-73
779	chr3L	21243750	21243767	chr3L	21251313	21251330	412	9	7562	3.5	5.0	4.2	1.7	7580	chr3L	21243750	intron	Eip78C +	chr3L	21247540	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_9_21245001	chr3L_21245001	RAL-73
780	chr3L	21498832	21498866	chr3L	21500468	21500502	1360	12	1635	5.0	2.5	3.8	2.5	1670	chr3L	21498832	intron	Glg1 -	chr3L	21499667	intron	Glg1 -	chr3L	21500502	intron	Glg1 -	chr3L_12_21495001	chr3L_21495001	RAL-73
785	chr3L	21749321	21749343	chr3L	21754481	21754503	Doc	6	5160	2.0	5.0	3.5	1.3	5182	chr3L	21749321	intron	Syn1 -	chr3L	21751912	intron	Syn1 -	chr3L	21754503	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-73
795	chr3L	22555797	22555802	chr3L	22563238	22563240	blood	4	7442	1.0	1.0	1.0	2.0	7443	chr3L	22555797	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563240	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-73
796	chr3L	22577627	22577643	chr3L	22582415	22582431	Doc	9	4788	5.0	6.0	5.5	1.4	4804	chr3L	22577627	intergenic	not near genes	chr3L	22580029	intergenic	not near genes	chr3L	22582431	3` UTR	CG14459 -	chr3L_9_22580001	chr3L_22580001	RAL-73
797	chr3L	22617199	22617218	chr3L	22624650	22624670	blood	4	7452	1.5	3.0	2.2	1.2	7471	chr3L	22617199	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624670	intron	CG14459 -	chr3L_4_22620001	chr3L_22620001	RAL-73
800	chr3L	22865986	22866013	chr3L	22867119	22867146	Doc	4	1133	0.5	0.0	0.2	3.3	1160	chr3L	22865986	intron	CG33170 +	chr3L	22866566	intron	CG33170 +	chr3L	22867146	intron	CG33170 +	chr3L_4_22865001	chr3L_22865001	RAL-73
802	chr3L	24168786	24168820	chr3L	24176114	24176148	ZAM	9	7326	3.0	3.0	3.0	2.2	7362	chr3L	24168786	intron	Snap25 +	chr3L	24172467	intron	Snap25 +	chr3L	24176148	intron	Snap25 +	chr3L_9_24170001	chr3L_24170001	RAL-73
803	chr3L	24206084	24206108	chr3L	24206398	24206422	flea	6	314	0.0	1.5	0.8	3.3	338	chr3L	24206084	intron	Snap25 +	chr3L	24206253	intron	Snap25 +	chr3L	24206422	intron	Snap25 +	chr3L_6_24205001	chr3L_24205001	RAL-73
813	chr3R	4105039	4105069	chr3R	4110243	4110273	copia	5	5204	0.0	0.5	0.2	4.2	5234	chr3R	4105039	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110273	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	RAL-73
818	chr3R	4683183	4683209	chr3R	4684942	4684965	S-element	6	1758	3.0	3.0	3.0	1.5	1782	chr3R	4683183	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684965	intron	CG43427 +	chr3R_6_4680001	chr3R_4680001	RAL-73
819	chr3R	4753239	4753273	chr3R	4757542	4757575	F-element	8	4303	1.5	6.0	3.8	1.7	4336	chr3R	4753239	intron,intron	atms +,CG44098 -	chr3R	4755407	intron,intron	atms +,CG44098 -	chr3R	4757575	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-73
822	chr3R	4887489	4887511	chr3R	4894866	4894888	rover	6	7377	2.5	4.0	3.2	1.4	7399	chr3R	4887489	intergenic	not near genes	chr3R	4891188	intergenic	not near genes	chr3R	4894888	intergenic	not near genes	chr3R_6_4890001	chr3R_4890001	RAL-73
825	chr3R	5338396	5338427	chr3R	5343573	5343604	Rt1c	5	5177	2.0	7.5	4.8	0.9	5208	chr3R	5338396	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343604	intron	mtd -	chr3R_5_5340001	chr3R_5340001	RAL-73
828	chr3R	5746022	5746035	chr3R	5746263	5746276	pogo	4	241	1.0	4.0	2.5	1.1	254	chr3R	5746022	3` UTR	Madm +	chr3R	5746149	3` UTR	Madm +	chr3R	5746276	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-73
831	chr3R	5809112	5809145	chr3R	5809353	5809386	pogo	9	241	2.0	3.0	2.5	2.6	274	chr3R	5809112	3` UTR	CG11000 +	chr3R	5809249	3` UTR	CG11000 +	chr3R	5809386	3` UTR	CG11000 +	chr3R_9_5805001	chr3R_5805001	RAL-73
832	chr3R	5822377	5822400	chr3R	5823544	5823567	1360	5	1167	3.0	2.0	2.5	1.4	1190	chr3R	5822377	3` UTR	CG2023 -	chr3R	5822972	3` UTR	CG2023 -	chr3R	5823567	3` UTR	CG2023 -	chr3R_5_5820001	chr3R_5820001	RAL-73
834	chr3R	5927560	5927587	chr3R	5927800	5927827	pogo	7	240	1.5	1.0	1.2	3.2	267	chr3R	5927560	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927827	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-73
837	chr3R	6015963	6015994	chr3R	6024444	6024474	Tirant	8	8478	1.0	2.5	1.8	2.9	8511	chr3R	6015963	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024474	intergenic	not near genes	chr3R_8_6020001	chr3R_6020001	RAL-73
839	chr3R	6158512	6158522	chr3R	6167095	6167105	Tirant	5	8583	7.0	1.5	4.2	1.0	8593	chr3R	6158512	intergenic	not near genes	chr3R	6162808	intergenic	not near genes	chr3R	6167105	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	RAL-73
840	chr3R	6158524	6158540	chr3R	6167090	6167123	Tirant	10	8579	5.5	1.5	3.5	2.2	8599	chr3R	6158524	intergenic	not near genes	chr3R	6162824	intergenic	not near genes	chr3R	6167123	intergenic	CG1077 +	chr3R_10_6160001	chr3R_6160001	RAL-73
844	chr3R	6737501	6737526	chr3R	6739288	6739313	Doc	11	1786	5.5	3.5	4.5	2.0	1812	chr3R	6737501	intron	pb -	chr3R	6738407	intron	pb -	chr3R	6739313	intron	pb -	chr3R_11_6735001	chr3R_6735001	RAL-73
854	chr3R	7729476	7729498	chr3R	7737414	7737436	Stalker2	5	7938	0.5	2.0	1.2	2.3	7960	chr3R	7729476	intergenic	not near genes	chr3R	7733456	intergenic	not near genes	chr3R	7737436	intergenic	not near genes	chr3R_5_7730001	chr3R_7730001	RAL-73
859	chr3R	8101768	8101789	chr3R	8104851	8104873	G2	8	3084	1.0	0.0	0.5	5.3	3105	chr3R	8101768	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104873	3` UTR	CG7900 +	chr3R_8_8100001	chr3R_8100001	RAL-73
862	chr3R	8403008	8403038	chr3R	8412174	8412204	roo	11	9166	2.0	4.5	3.2	2.6	9196	chr3R	8403008	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412204	intron	CG45263 -	chr3R_11_8405001	chr3R_8405001	RAL-73
864	chr3R	8570477	8570508	chr3R	8575113	8575144	HMS-Beagle	4	4636	2.0	1.0	1.5	1.6	4667	chr3R	8570477	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575144	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-73
865	chr3R	8707358	8707385	chr3R	8709799	8709826	jockey	6	2440	5.5	3.5	4.5	1.1	2468	chr3R	8707358	intergenic	not near genes	chr3R	8708592	intergenic	not near genes	chr3R	8709826	intergenic	not near genes	chr3R_6_8705001	chr3R_8705001	RAL-73
870	chr3R	9319573	9319603	chr3R	9320008	9320038	jockey	7	435	2.0	2.5	2.2	2.2	465	chr3R	9319573	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320038	intron	CG8861 -	chr3R_7_9315001	chr3R_9315001	RAL-73
877	chr3R	10231783	10231812	chr3R	10237360	10237389	mdg3	8	5577	0.0	3.0	1.5	3.2	5606	chr3R	10231783	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237389	intron	CG42795 +	chr3R_8_10230001	chr3R_10230001	RAL-73
884	chr3R	10957870	10957885	chr3R	10963259	10963274	Rt1c	5	5388	4.5	7.0	5.8	0.7	5404	chr3R	10957870	intergenic	not near genes	chr3R	10960572	intergenic	not near genes	chr3R	10963274	intergenic	not near genes	chr3R_5_10960001	chr3R_10960001	RAL-73
895	chr3R	11841059	11841090	chr3R	11846250	11846273	BS	7	5189	7.0	3.0	5.0	1.2	5214	chr3R	11841059	intron	CG6959 -	chr3R	11843666	intron	CG6959 -	chr3R	11846273	intron	CG6959 -	chr3R_7_11840001	chr3R_11840001	RAL-73
906	chr3R	12920157	12920179	chr3R	12925356	12925382	copia	6	5202	3.5	1.5	2.5	1.7	5225	chr3R	12920157	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925382	intron	beat-Vb +	chr3R_6_12920001	chr3R_12920001	RAL-73
910	chr3R	13143031	13143065	chr3R	13148608	13148642	mdg3	23	5576	4.0	1.5	2.8	6.1	5611	chr3R	13143031	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148642	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_23_13145001	chr3R_13145001	RAL-73
933	chr3R	15132059	15132075	chr3R	15135119	15135135	Juan	7	3060	2.5	1.5	2.0	2.3	3076	chr3R	15132059	intergenic	CG42788 -	chr3R	15133597	intergenic	not near genes	chr3R	15135135	intergenic	CG6912 -	chr3R_7_15130001	chr3R_15130001	RAL-73
939	chr3R	15601169	15601191	chr3R	15608691	15608713	412	7	7522	5.0	3.5	4.2	1.3	7544	chr3R	15601169	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608713	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-73
940	chr3R	15618731	15618762	chr3R	15626203	15626236	blood	7	7474	0.5	4.0	2.2	2.2	7505	chr3R	15618731	intergenic	not near genes	chr3R	15622484	intergenic	not near genes	chr3R	15626236	intergenic	not near genes	chr3R_7_15620001	chr3R_15620001	RAL-73
951	chr3R	16756322	16756349	chr3R	16762513	16762540	diver	6	6191	2.5	0.0	1.2	2.7	6218	chr3R	16756322	intron	bxd -	chr3R	16759431	intron	bxd -	chr3R	16762540	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-73
952	chr3R	17591284	17591323	chr3R	17591720	17591759	F-element	6	436	2.0	1.5	1.8	2.1	475	chr3R	17591284	intergenic	not near genes	chr3R	17591522	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	RAL-73
954	chr3R	17925856	17925889	chr3R	17927322	17927356	hobo	19	1467	10.0	11.0	10.5	1.7	1500	chr3R	17925856	intron	cpo +	chr3R	17926606	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_19_17925001	chr3R_17925001	RAL-73
955	chr3R	18032786	18032803	chr3R	18040459	18040476	opus	4	7673	1.0	1.0	1.0	2.0	7690	chr3R	18032786	intergenic	not near genes	chr3R	18036631	intergenic	not near genes	chr3R	18040476	intergenic	not near genes	chr3R_4_18035001	chr3R_18035001	RAL-73
982	chr3R	20156696	20156720	chr3R	20165866	20165890	roo	7	9169	0.5	1.5	1.0	3.5	9194	chr3R	20156696	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165890	intergenic	not near genes	chr3R_7_20160001	chr3R_20160001	RAL-73
984	chr3R	20266520	20266548	chr3R	20272991	20273019	Burdock	6	6471	0.5	2.5	1.5	2.4	6499	chr3R	20266520	intron	cic +	chr3R	20269770	intron	cic +	chr3R	20273019	intron	cic +	chr3R_6_20265001	chr3R_20265001	RAL-73
996	chr3R	21141678	21141707	chr3R	21150159	21150186	Tirant	8	8478	1.5	3.0	2.2	2.5	8508	chr3R	21141678	intron	SNF4Agamma +	chr3R	21145932	intron	SNF4Agamma +	chr3R	21150186	intron	SNF4Agamma +	chr3R_8_21145001	chr3R_21145001	RAL-73
1003	chr3R	21761121	21761154	chr3R	21768512	21768546	mdg1	17	7390	2.0	3.5	2.8	4.5	7425	chr3R	21761121	exon	CG42335 +	chr3R	21764834	intron	CG42335 +	chr3R	21768546	exon	CG42335 +	chr3R_17_21760001	chr3R_21760001	RAL-73
1013	chr3R	22450541	22450577	chr3R	22453181	22453216	NOF	14	2640	1.0	4.5	2.8	3.7	2675	chr3R	22450541	intron	CG34376 +	chr3R	22451878	intron	CG34376 +	chr3R	22453216	intron	CG34376 +	chr3R_14_22450001	chr3R_22450001	RAL-73
1036	chr3R	23684695	23684730	chr3R	23685180	23685198	roo	20	476	5.0	4.0	4.5	3.6	503	chr3R	23684695	exon	CG18754 +	chr3R	23684946	intron	CG18754 +	chr3R	23685198	exon	CG18754 +	chr3R_20_23680001	chr3R_23680001	RAL-73
1039	chr3R	24072084	24072101	chr3R	24072522	24072539	jockey	6	437	7.5	0.0	3.8	1.2	455	chr3R	24072084	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072539	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-73
1040	chr3R	24076923	24076947	chr3R	24078389	24078414	hobo	8	1466	3.5	3.5	3.5	1.8	1491	chr3R	24076923	intron	4EHP -	chr3R	24077668	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-73
1041	chr3R	24207225	24207239	chr3R	24212299	24212315	flea	4	5076	6.0	4.0	5.0	0.7	5090	chr3R	24207225	intron	twin -	chr3R	24209770	intron	twin -	chr3R	24212315	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-73
1045	chr3R	24927124	24927155	chr3R	24931915	24931946	Doc	8	4791	1.5	4.5	3.0	2.0	4822	chr3R	24927124	intergenic	Trf4-2 +	chr3R	24929535	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_8_24925001	chr3R_24925001	RAL-73
1048	chr3R	25832694	25832722	chr3R	25841876	25841904	roo	6	9182	3.5	4.5	4.0	1.2	9210	chr3R	25832694	exon	alpha4GT2 +	chr3R	25837299	intron	alpha4GT2 +	chr3R	25841904	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-73
1050	chr3R	26108829	26108858	chr3R	26117412	26117421	Tirant	6	8579	1.5	0.0	0.8	3.3	8592	chr3R	26108829	5` UTR	CG31324 +	chr3R	26113125	intron	CG31324 +	chr3R	26117421	intron	CG31324 +	chr3R_6_26110001	chr3R_26110001	RAL-73
1058	chr3R	26376330	26376354	chr3R	26385490	26385514	roo	5	9160	2.5	0.0	1.2	2.3	9184	chr3R	26376330	intergenic	not near genes	chr3R	26380922	intergenic	not near genes	chr3R	26385514	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-73
1061	chr3R	26558347	26558355	chr3R	26565656	26565667	Stalker4	4	7311	5.0	6.0	5.5	0.6	7320	chr3R	26558347	intron	scrib +	chr3R	26562007	intron	scrib +	chr3R	26565667	intron	scrib +	chr3R_4_26560001	chr3R_26560001	RAL-73
1068	chr3R	27140521	27140537	chr3R	27148131	27148147	412	6	7610	4.0	5.5	4.8	1.0	7626	chr3R	27140521	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148147	intron	CG6051 -	chr3R_6_27140001	chr3R_27140001	RAL-73
1069	chr3R	27342807	27342824	chr3R	27351388	27351405	Tirant	5	8581	1.0	2.0	1.5	2.0	8598	chr3R	27342807	intron	CG42534 +	chr3R	27347106	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_5_27345001	chr3R_27345001	RAL-73
1077	chr3R	27725566	27725593	chr3R	27731008	27731035	I-element	5	5442	2.0	1.5	1.8	1.8	5469	chr3R	27725566	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731035	intergenic	not near genes	chr3R_5_27725001	chr3R_27725001	RAL-73
1083	chr3R	27856762	27856784	chr3R	27858244	27858267	hopper2	5	1483	4.0	2.0	3.0	1.2	1505	chr3R	27856762	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858267	intron	CG34353 -	chr3R_5_27855001	chr3R_27855001	RAL-73
1084	chr3R	27862954	27862986	chr3R	27868259	27868291	Transpac	7	5304	0.5	0.5	0.5	4.7	5337	chr3R	27862954	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868291	intron	CG34353 -	chr3R_7_27865001	chr3R_27865001	RAL-73
1085	chr3R	27875702	27875709	chr3R	27882757	27882764	297	5	7055	5.5	0.5	3.0	1.2	7062	chr3R	27875702	intron	CG34353 -	chr3R	27879233	intron	CG34353 -	chr3R	27882764	intron	CG34353 -	chr3R_5_27875001	chr3R_27875001	RAL-73
1087	chr3R	28068501	28068520	chr3R	28073943	28073961	I-element	4	5442	1.0	1.5	1.2	1.8	5460	chr3R	28068501	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073961	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-73
1090	chr3R	28173671	28173705	chr3R	28181101	28181135	mdg1	5	7430	0.0	2.0	1.0	2.5	7464	chr3R	28173671	intron	CG34354 +	chr3R	28177403	intron	CG34354 +	chr3R	28181135	intron	CG34354 +	chr3R_5_28175001	chr3R_28175001	RAL-73
1091	chr3R	28253355	28253362	chr3R	28255865	28255872	jockey	6	2510	2.5	3.0	2.8	1.6	2517	chr3R	28253355	intergenic	not near genes	chr3R	28254614	intergenic	not near genes	chr3R	28255872	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-73
1101	chr3R	28792869	28792903	chr3R	28797964	28797992	jockey	9	5093	2.0	2.5	2.2	2.8	5123	chr3R	28792869	intergenic	not near genes	chr3R	28795430	intergenic	not near genes	chr3R	28797992	intergenic	not near genes	chr3R_9_28795001	chr3R_28795001	RAL-73
1112	chr3R	29406623	29406641	chr3R	29407909	29407927	jockey	4	1286	1.5	4.5	3.0	1.0	1304	chr3R	29406623	intron	Ptp99A +	chr3R	29407275	intron	Ptp99A +	chr3R	29407927	intron	Ptp99A +	chr3R_4_29405001	chr3R_29405001	RAL-73
1116	chr3R	29738262	29738295	chr3R	29739729	29739762	hobo	8	1467	5.0	1.5	3.2	1.9	1500	chr3R	29738262	intergenic	CG1969 +,CG7598 +	chr3R	29739012	intron	CG1969 +	chr3R	29739762	5` UTR	CG1969 +	chr3R_8_29735001	chr3R_29735001	RAL-73
1118	chr3R	29882019	29882053	chr3R	29891176	29891210	roo	9	9157	0.0	1.0	0.5	6.0	9191	chr3R	29882019	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891210	intron	CG31038 +	chr3R_9_29885001	chr3R_29885001	RAL-73
1121	chr3R	30084854	30084878	chr3R	30086321	30086345	hobo	7	1467	4.5	5.5	5.0	1.2	1491	chr3R	30084854	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086345	intron	sima +	chr3R_7_30085001	chr3R_30085001	RAL-73
1127	chr3R	30317335	30317353	chr3R	30324927	30324945	roo	5	7592	1.5	2.0	1.8	1.8	7610	chr3R	30317335	intron	hdc +	chr3R	30321140	intron	hdc +	chr3R	30324945	intron	hdc +	chr3R_5_30320001	chr3R_30320001	RAL-73
1129	chr3R	30480475	30480512	chr3R	30482940	30482980	jockey	21	2468	4.0	2.0	3.0	5.2	2505	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482980	intron	PH4alphaEFB +	chr3R_21_30480001	chr3R_30480001	RAL-73
1135	chr3R	30679518	30679549	chr3R	30686987	30687018	blood	5	7469	2.5	2.0	2.2	1.6	7500	chr3R	30679518	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687018	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-73
1138	chr3R	31074239	31074262	chr3R	31081837	31081860	springer	5	7598	1.5	5.5	3.5	1.1	7621	chr3R	31074239	intron	Sox100B +	chr3R	31078050	intron	Sox100B +	chr3R	31081860	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-73
1139	chr3R	31279383	31279404	chr3R	31285574	31285594	diver	8	6189	3.0	7.5	5.2	1.3	6211	chr3R	31279383	intergenic	not near genes	chr3R	31282488	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_8_31280001	chr3R_31280001	RAL-73
1141	chr3R	31413090	31413118	chr3R	31418290	31418317	copia	11	5200	3.0	0.0	1.5	4.4	5227	chr3R	31413090	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418317	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-73
1148	chr3R	31691531	31691558	chr3R	31696297	31696324	Doc	7	4763	4.0	4.5	4.2	1.3	4793	chr3R	31691531	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696324	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-73
1154	chr3R	31998003	31998021	chr3R	32005472	32005491	blood	7	7470	0.5	1.5	1.0	3.5	7488	chr3R	31998003	intron	heph -	chr3R	32001747	intron	heph -	chr3R	32005491	intron	heph -	chr3R_7_32000001	chr3R_32000001	RAL-73
1156	chr4	671617	671636	chr4	680199	680216	Tirant	6	8582	0.5	1.0	0.8	3.3	8599	chr4	671617	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680216	intron	CG11360 +	chr4_6_675001	chr4_675001	RAL-73
1157	chrX	295860	295882	chrX	303479	303501	412	6	7619	1.0	1.0	1.0	3.0	7641	chrX	295860	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303501	intron	CG3777 +	chrX_6_295001	chrX_295001	RAL-73
1158	chrX	551421	551454	chrX	558983	559016	412	8	7562	2.5	3.5	3.0	2.0	7595	chrX	551421	intron	Appl +	chrX	555218	intron	Appl +	chrX	559016	intron	Appl +	chrX_8_555001	chrX_555001	RAL-73
1163	chrX	827600	827635	chrX	835392	835427	roo	5	7792	3.0	1.5	2.2	1.6	7827	chrX	827600	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835427	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-73
1164	chrX	906702	906732	chrX	908491	908518	S-element	16	1789	2.5	5.5	4.0	3.2	1816	chrX	906702	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908518	intron	CG43867 -	chrX_16_905001	chrX_905001	RAL-73
1167	chrX	1627976	1628002	chrX	1635444	1635464	gtwin	14	7467	4.5	4.0	4.2	2.7	7488	chrX	1627976	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635464	intron,intron	Mur2B -,br +	chrX_14_1630001	chrX_1630001	RAL-73
1169	chrX	1954888	1954916	chrX	1962828	1962855	Stalker2	4	7939	3.0	3.0	3.0	1.0	7967	chrX	1954888	intron	Hr4 +	chrX	1958872	intron	Hr4 +	chrX	1962855	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-73
1171	chrX	2399855	2399864	chrX	2408190	2408192	roo	6	8338	3.0	0.5	1.8	2.1	8337	chrX	2399855	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408192	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-73
1179	chrX	3058033	3058047	chrX	3058274	3058288	pogo	4	241	0.0	0.5	0.2	3.3	255	chrX	3058033	intron	kirre +	chrX	3058160	intron	kirre +	chrX	3058288	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-73
1182	chrX	3493093	3493100	chrX	3502252	3502259	roo	5	9159	6.0	2.0	4.0	1.0	9166	chrX	3493093	intron,intron	CR44999 +,Gas8 -	chrX	3497676	intron,intron	CR44999 +,Gas8 -	chrX	3502259	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	RAL-73
1183	chrX	3597549	3597582	chrX	3619717	3619750	roo	11	22168	3.5	1.5	2.5	3.1	22201	chrX	3597549	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619750	intron	AstA-R1 +	chrX_11_3605001	chrX_3605001	RAL-73
1186	chrX	3986870	3986881	chrX	3994502	3994513	412	6	7632	2.0	1.5	1.8	2.1	7643	chrX	3986870	intergenic	not near genes	chrX	3990692	intergenic	not near genes	chrX	3994513	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RAL-73
1189	chrX	4731821	4731850	chrX	4736914	4736917	jockey	9	5090	4.0	3.5	3.8	1.9	5096	chrX	4731821	intergenic	not near genes	chrX	4734369	intergenic	not near genes	chrX	4736917	intergenic	not near genes	chrX_9_4730001	chrX_4730001	RAL-73
1190	chrX	4763249	4763282	chrX	4763737	4763770	Stalker4	5	488	2.0	1.0	1.5	2.0	521	chrX	4763249	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763770	intergenic	not near genes	chrX_5_4760001	chrX_4760001	RAL-73
1191	chrX	4827977	4827992	chrX	4835348	4835351	Stalker4	4	7368	2.5	4.0	3.2	1.0	7374	chrX	4827977	intergenic	not near genes	chrX	4831664	intergenic	not near genes	chrX	4835351	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-73
1192	chrX	4827995	4828001	chrX	4835347	4835372	Stalker4	5	7364	2.5	4.0	3.2	1.2	7377	chrX	4827995	intergenic	not near genes	chrX	4831684	intergenic	not near genes	chrX	4835372	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-73
1199	chrX	5883815	5883836	chrX	5884055	5884077	pogo	4	241	1.5	0.0	0.8	2.2	262	chrX	5883815	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884077	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-73
1201	chrX	6392869	6392904	chrX	6397634	6397669	Doc	9	4764	2.5	0.5	1.5	3.6	4800	chrX	6392869	intergenic	not near genes	chrX	6395269	intergenic	not near genes	chrX	6397669	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-73
1202	chrX	6562820	6562846	chrX	6571298	6571328	Tirant	10	8480	5.0	7.0	6.0	1.4	8508	chrX	6562820	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571328	intron	CG34417 +	chrX_10_6565001	chrX_6565001	RAL-73
1206	chrX	7023602	7023634	chrX	7030991	7031024	Tabor	10	7390	1.0	2.5	1.8	3.6	7422	chrX	7023602	intron	CG12541 -	chrX	7027313	intron	CG12541 -	chrX	7031024	intron	CG12541 -	chrX_10_7025001	chrX_7025001	RAL-73
1207	chrX	7125256	7125274	chrX	7134415	7134433	roo	4	9159	0.5	3.0	1.8	1.4	9177	chrX	7125256	intergenic	not near genes	chrX	7129844	intergenic	not near genes	chrX	7134433	intergenic	not near genes	chrX_4_7125001	chrX_7125001	RAL-73
1209	chrX	8031428	8031448	chrX	8035737	8035757	Juan	5	4309	2.0	3.0	2.5	1.4	4329	chrX	8031428	intergenic	not near genes	chrX	8033592	intergenic	not near genes	chrX	8035757	3` UTR	CG2233 -	chrX_5_8030001	chrX_8030001	RAL-73
1211	chrX	8922326	8922346	chrX	8922760	8922780	jockey	9	434	5.0	0.5	2.8	2.4	454	chrX	8922326	intron	rdgA +	chrX	8922553	intron	rdgA +	chrX	8922780	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-73
1215	chrX	9508134	9508156	chrX	9509652	9509674	jockey	4	1518	1.5	1.5	1.5	1.6	1540	chrX	9508134	intron	CG32700 -	chrX	9508904	intron	CG32700 -	chrX	9509674	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-73
1216	chrX	9575790	9575812	chrX	9576114	9576136	mdg3	9	324	2.5	2.0	2.2	2.8	346	chrX	9575790	intron,exon	CG32699 -,CG42395 -	chrX	9575963	intron,intron	CG32699 -,CG42395 -	chrX	9576136	intron,5` UTR	CG32699 -,CG42395 -	chrX_9_9575001	chrX_9575001	RAL-73
1220	chrX	10138227	10138245	chrX	10145731	10145749	412	4	7504	1.5	2.5	2.0	1.3	7522	chrX	10138227	intron,intron	RhoU +,CR44894 -	chrX	10141988	intron,intron	RhoU +,CR44894 -	chrX	10145749	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	RAL-73
1223	chrX	10550855	10550889	chrX	10552322	10552356	hobo	8	1467	2.5	1.5	2.0	2.7	1501	chrX	10550855	intron	spri -	chrX	10551606	intron	spri -	chrX	10552356	intron	spri -	chrX_8_10550001	chrX_10550001	RAL-73
1226	chrX	11194449	11194460	chrX	11201870	11201881	gypsy5	5	7421	0.0	7.0	3.5	1.1	7432	chrX	11194449	intergenic	not near genes	chrX	11198165	intergenic	not near genes	chrX	11201881	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	RAL-73
1227	chrX	11268563	11268595	chrX	11270056	11270088	hopper2	11	1493	3.0	5.0	4.0	2.2	1525	chrX	11268563	intron	CG44422 -	chrX	11269326	intron	CG44422 -	chrX	11270088	intron	CG44422 -	chrX_11_11265001	chrX_11265001	RAL-73
1228	chrX	11312067	11312090	chrX	11319420	11319440	Stalker2	5	7352	1.0	1.5	1.2	2.3	7373	chrX	11312067	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319440	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RAL-73
1229	chrX	11633420	11633446	chrX	11640474	11640500	297	4	7054	1.0	1.0	1.0	2.0	7080	chrX	11633420	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640500	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-73
1245	chrX	14105024	14105046	chrX	14114175	14114197	roo	6	9151	3.0	3.5	3.2	1.4	9173	chrX	14105024	intergenic	not near genes	chrX	14109610	intergenic	not near genes	chrX	14114197	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-73
1250	chrX	14416312	14416333	chrX	14421079	14421100	F-element	4	4767	0.5	1.0	0.8	2.2	4788	chrX	14416312	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421100	intron	dpr8 +	chrX_4_14415001	chrX_14415001	RAL-73
1252	chrX	14636461	14636485	chrX	14641902	14641926	I-element	7	5441	3.0	2.0	2.5	2.0	5465	chrX	14636461	intron	NetA -	chrX	14639194	intron	NetA -	chrX	14641926	intron	NetA -	chrX_7_14635001	chrX_14635001	RAL-73
1253	chrX	14818762	14818782	chrX	14823966	14823985	copia	8	5202	4.0	1.5	2.8	2.1	5223	chrX	14818762	intron	rut -	chrX	14821374	intron	rut -	chrX	14823985	intron	rut -	chrX_8_14820001	chrX_14820001	RAL-73
1257	chrX	15413050	15413082	chrX	15417352	15417384	Juan	8	4302	3.0	3.0	3.0	2.0	4334	chrX	15413050	intron	Cngl -	chrX	15415217	intron	Cngl -	chrX	15417384	intron	Cngl -	chrX_8_15415001	chrX_15415001	RAL-73
1271	chrX	17556942	17556959	chrX	17557440	17557458	mdg1	7	499	5.5	1.5	3.5	1.6	516	chrX	17556942	intron	CG43658 -	chrX	17557200	intron	CG43658 -	chrX	17557458	intron	CG43658 -	chrX_7_17555001	chrX_17555001	RAL-73
1276	chrX	18194065	18194098	chrX	18194600	18194633	BS	6	535	2.0	0.5	1.2	2.7	568	chrX	18194065	intron	Frq2 +	chrX	18194349	intron	Frq2 +	chrX	18194633	intron	Frq2 +	chrX_6_18190001	chrX_18190001	RAL-73
1282	chrX	19060410	19060431	chrX	19065194	19065215	Doc	4	4784	2.5	1.0	1.8	1.4	4805	chrX	19060410	intron	CG14190 +	chrX	19062812	intron	CG14190 +	chrX	19065215	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-73
1285	chrX	19136553	19136585	chrX	19143473	19143504	412	4	6918	0.0	3.5	1.8	1.4	6951	chrX	19136553	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143504	3` UTR	RhoGAP18B -	chrX_4_19140001	chrX_19140001	RAL-73
1289	chrX	19380158	19380187	chrX	19380399	19380416	pogo	4	238	1.5	1.5	1.5	1.6	258	chrX	19380158	intron	kek5 +	chrX	19380287	intron	kek5 +	chrX	19380416	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-73
1292	chrX	19472132	19472149	chrX	19472702	19472719	jockey	5	570	1.5	4.0	2.8	1.3	587	chrX	19472132	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472719	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-73
1301	chrX	20377325	20377348	chrX	20378792	20378815	hobo	14	1466	2.5	6.0	4.2	2.7	1490	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378815	intergenic	not near genes	chrX_14_20375001	chrX_20375001	RAL-73
1308	chrX	20940721	20940747	chrX	20942190	20942216	hobo	8	1469	2.0	3.5	2.8	2.1	1495	chrX	20940721	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942216	intergenic	not near genes	chrX_8_20940001	chrX_20940001	RAL-73
1315	chrX	22522640	22522659	chrX	22525460	22525479	NOF	5	2820	3.0	0.0	1.5	2.0	2839	chrX	22522640	intron	CG17600 +	chrX	22524060	intron	CG17600 +	chrX	22525479	intron	CG17600 +	chrX_5_22520001	chrX_22520001	RAL-73