SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47463 47485 chr2L 52567 52590 jockey 10 5105 2.5 5.5 4.0 2.0 5127 chr2L 47463 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52590 intron Cda5 - chr2L_10_50001 chr2L_50001 RAL-73 2 chr2L 89720 89748 chr2L 89789 89824 8 76 1.5 0.5 1.0 4.0 104 chr2L 89720 intergenic not near genes chr2L 89772 intergenic not near genes chr2L 89824 intergenic not near genes chr2L_8_85001 chr2L_85001 RAL-73 3 chr2L 179457 179487 chr2L 179540 179570 5 83 2.5 1.5 2.0 1.7 113 chr2L 179457 intron spen + chr2L 179514 intron spen + chr2L 179570 intron spen + chr2L_5_175001 chr2L_175001 RAL-73 4 chr2L 297684 297716 chr2L 297784 297816 11 100 0.5 3.0 1.8 3.9 132 chr2L 297684 intergenic Pi3K21B +,Hop + chr2L 297750 intergenic Pi3K21B +,Hop + chr2L 297816 intergenic Pi3K21B +,Hop + chr2L_11_295001 chr2L_295001 RAL-73 5 chr2L 323458 323484 chr2L 323535 323560 11 77 2.5 3.0 2.8 2.9 102 chr2L 323458 intron Plc21C + chr2L 323509 intron Plc21C + chr2L 323560 intron Plc21C + chr2L_11_320001 chr2L_320001 RAL-73 6 chr2L 325139 325154 chr2L 325207 325231 6 75 6.0 3.5 4.8 1.0 92 chr2L 325139 intron Plc21C + chr2L 325185 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-73 7 chr2L 467364 467492 chr2L 467463 467581 5 91 2.0 2.0 2.0 1.7 217 chr2L 467364 intron CG4297 - chr2L 467472 intron CG4297 - chr2L 467581 intron CG4297 - chr2L_5_465001 chr2L_465001 RAL-73 8 chr2L 504322 504354 chr2L 504398 504430 10 76 1.5 0.0 0.8 5.6 108 chr2L 504322 intron ush + chr2L 504376 intron ush + chr2L 504430 intron ush + chr2L_10_500001 chr2L_500001 RAL-73 9 chr2L 605015 605037 chr2L 605097 605117 7 83 1.0 2.0 1.5 2.8 102 chr2L 605015 intergenic not near genes chr2L 605066 intergenic not near genes chr2L 605117 intergenic not near genes chr2L_7_605001 chr2L_605001 RAL-73 10 chr2L 686916 686928 chr2L 695956 695968 roo 5 9040 3.5 0.5 2.0 1.7 9052 chr2L 686916 intron ds - chr2L 691442 intron ds - chr2L 695968 intron ds - chr2L_5_690001 chr2L_690001 RAL-73 11 chr2L 741247 741281 chr2L 744785 744819 13 3538 29.5 11.5 20.5 0.6 3572 chr2L 741247 intron Eaat2 - chr2L 743033 intron Eaat2 - chr2L 744819 intergenic Eaat2 - chr2L_13_740001 chr2L_740001 RAL-73 12 chr2L 770473 770492 chr2L 772245 772272 Bari1 8 1778 5.5 5.5 5.5 1.2 1799 chr2L 770473 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772272 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-73 13 chr2L 777459 777475 chr2L 777540 777556 4 80 9.0 2.5 5.8 0.6 97 chr2L 777459 intergenic not near genes chr2L 777508 intergenic not near genes chr2L 777556 intergenic not near genes chr2L_4_775001 chr2L_775001 RAL-73 14 chr2L 914674 914702 chr2L 914754 914783 8 81 4.0 6.0 5.0 1.3 109 chr2L 914674 intron GluRIIC + chr2L 914728 intron GluRIIC + chr2L 914783 intron GluRIIC + chr2L_8_910001 chr2L_910001 RAL-73 15 chr2L 922463 922496 chr2L 922544 922577 4 81 0.0 3.0 1.5 1.6 114 chr2L 922463 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922577 intergenic CG4341 + chr2L_4_920001 chr2L_920001 RAL-73 16 chr2L 976877 976899 chr2L 984513 984535 roo 5 7636 2.0 0.5 1.2 2.3 7658 chr2L 976877 intergenic not near genes chr2L 980706 intergenic not near genes chr2L 984535 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-73 17 chr2L 1028858 1028871 chr2L 1028942 1028965 4 94 2.5 4.0 3.2 1.0 107 chr2L 1028858 intron IA-2 - chr2L 1028912 intron IA-2 - chr2L 1028965 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-73 18 chr2L 1066096 1066126 chr2L 1066177 1066207 6 81 3.0 4.5 3.8 1.2 111 chr2L 1066096 intron S - chr2L 1066152 intron S - chr2L 1066207 intron S - chr2L_6_1065001 chr2L_1065001 RAL-73 19 chr2L 1137664 1137684 chr2L 1137842 1137864 5 179 2.0 2.0 2.0 1.7 200 chr2L 1137664 intron CG4577 + chr2L 1137764 intron CG4577 + chr2L 1137864 intron CG4577 + chr2L_5_1135001 chr2L_1135001 RAL-73 20 chr2L 1220129 1220157 chr2L 1227595 1227623 blood 6 7466 4.5 0.5 2.5 1.7 7494 chr2L 1220129 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-73 21 chr2L 1390370 1390396 chr2L 1390448 1390476 9 79 0.5 3.0 1.8 3.2 106 chr2L 1390370 intron lea - chr2L 1390423 intron lea - chr2L 1390476 intron lea - chr2L_9_1390001 chr2L_1390001 RAL-73 22 chr2L 1413149 1413186 chr2L 1413246 1413285 7 98 5.5 14.5 10.0 0.6 136 chr2L 1413149 intron lea - chr2L 1413217 intron lea - chr2L 1413285 intron lea - chr2L_7_1410001 chr2L_1410001 RAL-73 23 chr2L 1443274 1443288 chr2L 1443349 1443364 5 76 1.0 3.0 2.0 1.7 90 chr2L 1443274 exon CG43402 + chr2L 1443319 3` UTR CG43402 + chr2L 1443364 3` UTR CG43402 + chr2L_5_1440001 chr2L_1440001 RAL-73 24 chr2L 1570689 1570707 chr2L 1573561 1573579 F-element 6 2872 5.0 2.0 3.5 1.3 2890 chr2L 1570689 intron haf + chr2L 1572134 intron haf + chr2L 1573579 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-73 25 chr2L 1677377 1677406 chr2L 1677459 1677488 6 82 4.0 2.5 3.2 1.4 111 chr2L 1677377 intron chinmo + chr2L 1677432 intron chinmo + chr2L 1677488 intron chinmo + chr2L_6_1675001 chr2L_1675001 RAL-73 26 chr2L 1678979 1679008 chr2L 1686444 1686473 blood 4 7465 1.5 4.5 3.0 1.0 7494 chr2L 1678979 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686473 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-73 27 chr2L 1693152 1693172 chr2L 1693277 1693297 9 124 6.0 0.5 3.2 2.1 145 chr2L 1693152 intron chinmo + chr2L 1693224 intron chinmo + chr2L 1693297 intron chinmo + chr2L_9_1690001 chr2L_1690001 RAL-73 28 chr2L 1711360 1711388 chr2L 1711684 1711712 mdg3 9 324 2.5 3.0 2.8 2.4 352 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711536 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-73 29 chr2L 1721826 1721848 chr2L 1721910 1721932 6 84 0.0 2.0 1.0 3.0 106 chr2L 1721826 intron Rim2 - chr2L 1721879 intron Rim2 - chr2L 1721932 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-73 30 chr2L 2001785 2001817 chr2L 2001863 2001895 5 78 0.0 1.5 0.8 2.8 110 chr2L 2001785 intron,5` UTR CG33543 -,CR43464 + chr2L 2001840 intron,5` UTR CG33543 -,CR43464 + chr2L 2001895 intron,5` UTR CG33543 -,CR43464 + chr2L_5_2000001 chr2L_2000001 RAL-73 31 chr2L 2047809 2047831 chr2L 2048004 2048026 5 195 2.5 0.0 1.2 2.3 217 chr2L 2047809 3` UTR Kebab + chr2L 2047918 3` UTR Kebab + chr2L 2048026 3` UTR Kebab + chr2L_5_2045001 chr2L_2045001 RAL-73 32 chr2L 2068809 2068839 chr2L 2068993 2069022 8 183 1.5 4.0 2.8 2.1 213 chr2L 2068809 intron dpr3 - chr2L 2068916 intron dpr3 - chr2L 2069022 intron dpr3 - chr2L_8_2065001 chr2L_2065001 RAL-73 33 chr2L 2100377 2100408 chr2L 2109528 2109552 roo 16 9150 1.0 3.5 2.2 5.0 9175 chr2L 2100377 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_16_2100001 chr2L_2100001 RAL-73 34 chr2L 2112119 2112145 chr2L 2119777 2119800 opus 5 7655 1.5 3.5 2.5 1.4 7681 chr2L 2112119 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119800 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-73 35 chr2L 2175959 2175983 chr2L 2176036 2176061 6 76 0.5 0.0 0.2 5.0 102 chr2L 2175959 intron aop - chr2L 2176010 intron aop - chr2L 2176061 intron aop - chr2L_6_2175001 chr2L_2175001 RAL-73 36 chr2L 2184350 2184381 chr2L 2184571 2184602 10 221 2.0 2.5 2.2 3.1 252 chr2L 2184350 intron CR43751 + chr2L 2184476 5` UTR CR43751 + chr2L 2184602 5` UTR CR43751 + chr2L_10_2180001 chr2L_2180001 RAL-73 37 chr2L 2262313 2262335 chr2L 2262390 2262412 7 77 1.0 0.0 0.5 4.7 99 chr2L 2262313 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262412 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-73 38 chr2L 2392156 2392177 chr2L 2392266 2392287 4 110 0.5 0.5 0.5 2.7 131 chr2L 2392156 intron VGlut + chr2L 2392222 intron VGlut + chr2L 2392287 intron VGlut + chr2L_4_2390001 chr2L_2390001 RAL-73 39 chr2L 2618035 2618064 chr2L 2618114 2618143 5 79 3.0 2.5 2.8 1.3 108 chr2L 2618035 intergenic not near genes chr2L 2618089 intergenic not near genes chr2L 2618143 intergenic not near genes chr2L_5_2615001 chr2L_2615001 RAL-73 40 chr2L 2661192 2661236 chr2L 2663030 2663053 I-element 10 1835 1.5 4.0 2.8 2.6 1861 chr2L 2661192 intergenic not near genes chr2L 2662122 intergenic not near genes chr2L 2663053 intergenic not near genes chr2L_10_2660001 chr2L_2660001 RAL-73 41 chr2L 2667624 2667649 chr2L 2667703 2667728 12 78 2.0 3.5 2.8 3.2 104 chr2L 2667624 intergenic not near genes chr2L 2667676 intergenic not near genes chr2L 2667728 intergenic not near genes chr2L_12_2665001 chr2L_2665001 RAL-73 42 chr2L 2713512 2713551 chr2L 2713611 2713650 17 99 0.5 3.5 2.0 5.7 138 chr2L 2713512 intron CG31690 + chr2L 2713581 intron CG31690 + chr2L 2713650 intron CG31690 + chr2L_17_2710001 chr2L_2710001 RAL-73 43 chr2L 2933314 2933332 chr2L 2935486 2935509 pogo 6 2176 4.0 4.0 4.0 1.2 2195 chr2L 2933314 intron lilli + chr2L 2934412 intron lilli + chr2L 2935509 intron lilli + chr2L_6_2930001 chr2L_2930001 RAL-73 44 chr2L 3073029 3073064 chr2L 3078232 3078267 copia 8 5203 1.0 2.0 1.5 3.2 5238 chr2L 3073029 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-73 45 chr2L 3137088 3137122 chr2L 3137688 3137722 10 597 0.5 2.0 1.2 4.5 634 chr2L 3137088 intron toc - chr2L 3137405 intron toc - chr2L 3137722 intron toc - chr2L_10_3135001 chr2L_3135001 RAL-73 46 chr2L 3192217 3192232 chr2L 3192328 3192342 4 111 1.0 4.0 2.5 1.1 125 chr2L 3192217 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192342 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-73 47 chr2L 3251495 3251501 chr2L 3259060 3259066 springer 4 7565 4.5 3.5 4.0 0.8 7571 chr2L 3251495 intergenic not near genes chr2L 3255280 intergenic not near genes chr2L 3259066 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-73 48 chr2L 3291241 3291261 chr2L 3291321 3291340 7 79 1.5 4.0 2.8 1.8 99 chr2L 3291241 intergenic CG9664 - chr2L 3291290 3` UTR CG9664 - chr2L 3291340 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-73 49 chr2L 3323260 3323284 chr2L 3323366 3323391 7 107 2.0 2.5 2.2 2.2 131 chr2L 3323260 intergenic CG8837 + chr2L 3323326 intergenic CG8837 + chr2L 3323391 intergenic CG8837 + chr2L_7_3320001 chr2L_3320001 RAL-73 50 chr2L 3367011 3367043 chr2L 3367161 3367193 10 150 1.0 4.0 2.5 2.9 182 chr2L 3367011 intron CG34394 - chr2L 3367102 intron CG34394 - chr2L 3367193 intron CG34394 - chr2L_10_3365001 chr2L_3365001 RAL-73 51 chr2L 3393805 3393818 chr2L 3393870 3393874 7 75 2.5 7.0 4.8 1.2 69 chr2L 3393805 intergenic not near genes chr2L 3393840 intergenic not near genes chr2L 3393874 intergenic not near genes chr2L_7_3390001 chr2L_3390001 RAL-73 52 chr2L 3395026 3395048 chr2L 3395108 3395130 7 82 3.0 6.5 4.8 1.2 104 chr2L 3395026 intergenic not near genes chr2L 3395078 intergenic not near genes chr2L 3395130 intergenic not near genes chr2L_7_3395001 chr2L_3395001 RAL-73 53 chr2L 3611431 3611441 chr2L 3611510 3611520 4 79 3.5 0.0 1.8 1.4 89 chr2L 3611431 intergenic not near genes chr2L 3611476 intergenic not near genes chr2L 3611520 intergenic not near genes chr2L_4_3610001 chr2L_3610001 RAL-73 54 chr2L 3649792 3649807 chr2L 3654994 3655009 copia 6 5202 0.0 2.0 1.0 3.0 5217 chr2L 3649792 intron for - chr2L 3652400 intron for - chr2L 3655009 intron for - chr2L_6_3650001 chr2L_3650001 RAL-73 55 chr2L 3696101 3696116 chr2L 3696178 3696192 4 77 0.5 3.0 1.8 1.4 91 chr2L 3696101 intergenic CG16712 - chr2L 3696146 intergenic CG16712 - chr2L 3696192 intergenic CG16712 - chr2L_4_3695001 chr2L_3695001 RAL-73 56 chr2L 3819031 3819062 chr2L 3819113 3819144 7 82 1.0 0.0 0.5 4.7 113 chr2L 3819031 intergenic CR44077 + chr2L 3819088 intergenic not near genes chr2L 3819144 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-73 57 chr2L 3844348 3844354 chr2L 3844460 3844466 4 112 0.5 2.0 1.2 1.8 118 chr2L 3844348 intergenic not near genes chr2L 3844407 intergenic not near genes chr2L 3844466 intergenic not near genes chr2L_4_3840001 chr2L_3840001 RAL-73 58 chr2L 3879562 3879578 chr2L 3879786 3879795 4 224 0.0 7.0 3.5 0.9 233 chr2L 3879562 intron capu - chr2L 3879678 intron capu - chr2L 3879795 intron capu - chr2L_4_3875001 chr2L_3875001 RAL-73 59 chr2L 3891892 3891927 chr2L 3891977 3892012 8 85 1.0 1.5 1.2 3.6 120 chr2L 3891892 intron capu - chr2L 3891952 intron capu - chr2L 3892012 intron capu - chr2L_8_3890001 chr2L_3890001 RAL-73 60 chr2L 4082999 4083030 chr2L 4083087 4083118 9 88 2.5 4.0 3.2 2.1 119 chr2L 4082999 intron ed + chr2L 4083058 intron ed + chr2L 4083118 intron ed + chr2L_9_4080001 chr2L_4080001 RAL-73 61 chr2L 4160501 4160534 chr2L 4160912 4160945 5 411 4.5 1.0 2.8 1.3 444 chr2L 4160501 intergenic not near genes chr2L 4160723 intergenic not near genes chr2L 4160945 intergenic not near genes chr2L_5_4160001 chr2L_4160001 RAL-73 62 chr2L 4369537 4369558 chr2L 4370122 4370133 5 583 2.0 6.5 4.2 1.0 596 chr2L 4369537 intron Traf4 + chr2L 4369835 intron Traf4 + chr2L 4370133 intron Traf4 + chr2L_5_4365001 chr2L_4365001 RAL-73 63 chr2L 4576620 4576643 chr2L 4576853 4576882 10 236 1.0 4.0 2.5 2.9 262 chr2L 4576620 intron dp - chr2L 4576751 intron dp - chr2L 4576882 intron dp - chr2L_10_4575001 chr2L_4575001 RAL-73 64 chr2L 4601707 4601737 chr2L 4609148 4609178 mdg1 8 7441 3.5 2.0 2.8 2.1 7471 chr2L 4601707 intron dp - chr2L 4605442 intron dp - chr2L 4609178 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-73 65 chr2L 4657571 4657596 chr2L 4657648 4657670 8 76 2.5 2.5 2.5 2.3 99 chr2L 4657571 intergenic not near genes chr2L 4657620 intergenic not near genes chr2L 4657670 intergenic not near genes chr2L_8_4655001 chr2L_4655001 RAL-73 66 chr2L 4740422 4740456 chr2L 4740733 4740745 10 301 0.5 2.5 1.5 4.0 323 chr2L 4740422 intron CG15630 - chr2L 4740584 intron CG15630 - chr2L 4740745 intron CG15630 - chr2L_10_4740001 chr2L_4740001 RAL-73 67 chr2L 4770109 4770127 chr2L 4770191 4770210 6 82 4.0 0.0 2.0 2.0 101 chr2L 4770109 intron CG15630 - chr2L 4770160 intron CG15630 - chr2L 4770210 intron CG15630 - chr2L_6_4770001 chr2L_4770001 RAL-73 68 chr2L 4779809 4779834 chr2L 4779883 4779906 8 70 3.5 3.0 3.2 1.9 97 chr2L 4779809 intron CG15630 - chr2L 4779858 intron CG15630 - chr2L 4779906 intron CG15630 - chr2L_8_4775001 chr2L_4775001 RAL-73 69 chr2L 4953517 4953535 chr2L 4953758 4953775 pogo 8 240 6.5 3.0 4.8 1.4 258 chr2L 4953517 intergenic Jon25Bii - chr2L 4953646 intergenic not near genes chr2L 4953775 intergenic not near genes chr2L_8_4950001 chr2L_4950001 RAL-73 70 chr2L 5061428 5061456 chr2L 5061509 5061537 7 81 2.0 3.5 2.8 1.8 109 chr2L 5061428 intron qtc + chr2L 5061482 intron qtc + chr2L 5061537 intron qtc + chr2L_7_5060001 chr2L_5060001 RAL-73 71 chr2L 5120978 5121005 chr2L 5121072 5121099 7 94 3.0 2.0 2.5 2.0 121 chr2L 5120978 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-73 72 chr2L 5200538 5200567 chr2L 5215795 5215815 32 15252 65.5 38.5 52.0 0.6 15277 chr2L 5200538 exon Msp300 + chr2L 5208176 exon Cyp28d2 + chr2L 5215815 exon CG14034 - chr2L_32_5205001 chr2L_5205001 RAL-73 73 chr2L 5296216 5296246 chr2L 5296295 5296325 6 79 2.0 1.0 1.5 2.4 109 chr2L 5296216 intron vri + chr2L 5296270 intron vri + chr2L 5296325 intron vri + chr2L_6_5295001 chr2L_5295001 RAL-73 74 chr2L 5488016 5488033 chr2L 5488096 5488113 4 80 2.0 0.5 1.2 1.8 97 chr2L 5488016 intergenic not near genes chr2L 5488064 intergenic not near genes chr2L 5488113 intergenic not near genes chr2L_4_5485001 chr2L_5485001 RAL-73 75 chr2L 5508544 5508560 chr2L 5508620 5508636 4 76 1.0 2.0 1.5 1.6 92 chr2L 5508544 intergenic not near genes chr2L 5508590 intergenic not near genes chr2L 5508636 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-73 76 chr2L 5573680 5573707 chr2L 5573756 5573783 5 76 3.0 2.0 2.5 1.4 103 chr2L 5573680 intergenic not near genes chr2L 5573732 intergenic not near genes chr2L 5573783 intergenic not near genes chr2L_5_5570001 chr2L_5570001 RAL-73 77 chr2L 5666296 5666324 chr2L 5666384 5666414 4 90 1.5 0.5 1.0 2.0 118 chr2L 5666296 intron Hsp60C + chr2L 5666355 intron Hsp60C + chr2L 5666414 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-73 78 chr2L 5805221 5805250 chr2L 5805340 5805369 6 115 0.0 2.0 1.0 3.0 148 chr2L 5805221 intergenic CG11034 + chr2L 5805295 intergenic CG11034 + chr2L 5805369 intergenic CG11034 + chr2L_6_5805001 chr2L_5805001 RAL-73 79 chr2L 5827716 5827739 chr2L 5836724 5836746 roo 6 9007 4.0 3.5 3.8 1.2 9030 chr2L 5827716 intron TrissinR + chr2L 5832231 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-73 80 chr2L 5897592 5897626 chr2L 5897675 5897709 17 83 4.0 3.5 3.8 3.5 117 chr2L 5897592 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897709 intergenic not near genes chr2L_17_5895001 chr2L_5895001 RAL-73 81 chr2L 5942031 5942055 chr2L 5942123 5942147 9 92 0.0 4.0 2.0 3.0 116 chr2L 5942031 5` UTR CR45289 + chr2L 5942089 5` UTR CR45289 + chr2L 5942147 5` UTR CR45289 + chr2L_9_5940001 chr2L_5940001 RAL-73 82 chr2L 6007099 6007121 chr2L 6007175 6007197 5 76 1.5 0.0 0.8 2.8 98 chr2L 6007099 intergenic CG9098 -,Gal - chr2L 6007148 intergenic CG9098 -,Gal - chr2L 6007197 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-73 83 chr2L 6185441 6185470 chr2L 6185519 6185548 4 78 3.0 2.0 2.5 1.1 107 chr2L 6185441 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-73 84 chr2L 6318735 6318763 chr2L 6318889 6318917 6 154 0.5 1.0 0.8 3.3 182 chr2L 6318735 intron Ddr + chr2L 6318826 intron Ddr + chr2L 6318917 intron Ddr + chr2L_6_6315001 chr2L_6315001 RAL-73 85 chr2L 6363149 6363179 chr2L 6366071 6366101 Burdock 10 2920 1.0 1.5 1.2 4.5 2952 chr2L 6363149 intergenic not near genes chr2L 6364625 intergenic not near genes chr2L 6366101 intergenic not near genes chr2L_10_6360001 chr2L_6360001 RAL-73 86 chr2L 6426859 6426887 chr2L 6445119 6445147 roo 9 18260 1.5 2.5 2.0 3.0 18288 chr2L 6426859 3` UTR CG9527 - chr2L 6436003 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-73 87 chr2L 6458576 6458595 chr2L 6458657 6458675 4 80 2.0 1.0 1.5 1.6 99 chr2L 6458576 exon frj + chr2L 6458626 3` UTR frj + chr2L 6458675 3` UTR frj + chr2L_4_6455001 chr2L_6455001 RAL-73 88 chr2L 6509273 6509294 chr2L 6509423 6509444 6 150 2.0 3.0 2.5 1.7 171 chr2L 6509273 intron CG31637 + chr2L 6509358 intron CG31637 + chr2L 6509444 intron CG31637 + chr2L_6_6505001 chr2L_6505001 RAL-73 89 chr2L 6530395 6530423 chr2L 6530523 6530549 8 128 4.0 0.0 2.0 2.7 154 chr2L 6530395 intron eya - chr2L 6530472 intron eya - chr2L 6530549 intron eya - chr2L_8_6530001 chr2L_6530001 RAL-73 90 chr2L 6544375 6544394 chr2L 6544467 6544486 5 92 3.0 3.0 3.0 1.2 111 chr2L 6544375 intron eya - chr2L 6544430 intron eya - chr2L 6544486 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-73 91 chr2L 6590093 6590116 chr2L 6590171 6590193 5 78 4.0 0.0 2.0 1.7 100 chr2L 6590093 intron CG11319 - chr2L 6590143 intron CG11319 - chr2L 6590193 intron CG11319 - chr2L_5_6590001 chr2L_6590001 RAL-73 92 chr2L 6655525 6655543 chr2L 6655887 6655905 6 362 3.5 7.5 5.5 0.9 380 chr2L 6655525 exon CG31633 - chr2L 6655715 exon CG31633 - chr2L 6655905 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-73 93 chr2L 6799535 6799565 chr2L 6799623 6799653 4 88 0.5 0.0 0.2 3.3 118 chr2L 6799535 5` UTR CR43610 + chr2L 6799594 5` UTR CR43610 + chr2L 6799653 intergenic CR43610 +,CG17376 - chr2L_4_6795001 chr2L_6795001 RAL-73 94 chr2L 7090001 7090016 chr2L 7090078 7090093 7 77 5.0 2.5 3.8 1.5 92 chr2L 7090001 intergenic not near genes chr2L 7090047 intergenic not near genes chr2L 7090093 intergenic not near genes chr2L_7_7090001 chr2L_7090001 RAL-73 95 chr2L 7100981 7101014 chr2L 7101207 7101240 5 226 1.0 2.5 1.8 1.8 259 chr2L 7100981 intron Pvf3 - chr2L 7101110 intron Pvf3 - chr2L 7101240 intron Pvf3 - chr2L_5_7100001 chr2L_7100001 RAL-73 96 chr2L 7249620 7249646 chr2L 7249703 7249728 10 82 4.0 2.5 3.2 2.4 108 chr2L 7249620 intergenic Ndae1 - chr2L 7249674 intergenic Ndae1 - chr2L 7249728 intergenic Ndae1 - chr2L_10_7245001 chr2L_7245001 RAL-73 97 chr2L 7325912 7325949 chr2L 7325997 7326033 9 85 4.5 1.5 3.0 2.2 121 chr2L 7325912 intergenic not near genes chr2L 7325972 intergenic not near genes chr2L 7326033 intergenic not near genes chr2L_9_7325001 chr2L_7325001 RAL-73 98 chr2L 7343323 7343359 chr2L 7350439 7350475 roo 9 7116 3.0 3.5 3.2 2.1 7152 chr2L 7343323 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-73 99 chr2L 7365486 7365496 chr2L 7365564 7365574 4 78 0.0 5.0 2.5 1.1 88 chr2L 7365486 intron Wnt10 + chr2L 7365530 intron Wnt10 + chr2L 7365574 intron Wnt10 + chr2L_4_7365001 chr2L_7365001 RAL-73 100 chr2L 7468212 7468229 chr2L 7468299 7468316 6 87 2.0 2.0 2.0 2.0 104 chr2L 7468212 intron CG6055 + chr2L 7468264 intron CG6055 + chr2L 7468316 intron CG6055 + chr2L_6_7465001 chr2L_7465001 RAL-73 101 chr2L 7502754 7502762 chr2L 7502814 7502829 5 71 2.0 4.5 3.2 1.2 75 chr2L 7502754 intron RapGAP1 - chr2L 7502792 intron RapGAP1 - chr2L 7502829 intron RapGAP1 - chr2L_5_7500001 chr2L_7500001 RAL-73 102 chr2L 7665323 7665345 chr2L 7665416 7665438 5 91 5.0 2.5 3.8 1.0 115 chr2L 7665323 intron Slob - chr2L 7665380 intron Slob - chr2L 7665438 intron Slob - chr2L_5_7665001 chr2L_7665001 RAL-73 103 chr2L 7867578 7867594 chr2L 7867671 7867688 5 94 0.5 0.0 0.2 4.2 110 chr2L 7867578 intron Proc - chr2L 7867633 intron Proc - chr2L 7867688 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-73 104 chr2L 7959040 7959058 chr2L 7960451 7960469 pogo 4 1411 4.5 0.0 2.2 1.2 1429 chr2L 7959040 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960469 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-73 105 chr2L 7977089 7977112 chr2L 7984065 7984088 297 6 6976 1.0 1.0 1.0 3.0 6999 chr2L 7977089 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-73 106 chr2L 8013611 8013629 chr2L 8018815 8018833 copia 4 5204 2.5 0.0 1.2 1.8 5222 chr2L 8013611 intron Tg + chr2L 8016222 intron Tg + chr2L 8018833 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-73 107 chr2L 8044100 8044130 chr2L 8044179 8044209 8 79 0.5 0.5 0.5 5.3 109 chr2L 8044100 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044209 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-73 108 chr2L 8089682 8089716 chr2L 8105690 8105724 5 16008 9.0 10.0 9.5 0.5 16042 chr2L 8089682 exon Bsg + chr2L 8097703 intron Bsg + chr2L 8105724 exon Bsg + chr2L_5_8095001 chr2L_8095001 RAL-73 109 chr2L 8105763 8105786 chr2L 8106846 8106850 5 1076 22.5 15.0 18.8 0.3 1087 chr2L 8105763 exon Bsg + chr2L 8106306 intron Bsg + chr2L 8106850 exon Bsg + chr2L_5_8105001 chr2L_8105001 RAL-73 110 chr2L 8106947 8107150 chr2L 8107065 8107267 11 115 26.0 23.5 24.8 0.4 320 chr2L 8106947 exon Bsg + chr2L 8107107 exon Bsg + chr2L 8107267 exon Bsg + chr2L_11_8105001 chr2L_8105001 RAL-73 111 chr2L 8107404 8107419 chr2L 8107748 8107763 7 353 22.5 12.0 17.2 0.4 359 chr2L 8107404 exon Bsg + chr2L 8107584 intron Bsg + chr2L 8107763 exon Bsg + chr2L_7_8105001 chr2L_8105001 RAL-73 112 chr2L 8167148 8167181 chr2L 8167239 8167272 8 91 1.0 2.5 1.8 2.9 124 chr2L 8167148 intron Piezo + chr2L 8167210 intron Piezo + chr2L 8167272 intron Piezo + chr2L_8_8165001 chr2L_8165001 RAL-73 113 chr2L 8300302 8300335 chr2L 8300399 8300432 5 97 16.5 16.0 16.2 0.3 130 chr2L 8300302 intron Btk29A - chr2L 8300367 intron Btk29A - chr2L 8300432 intron Btk29A - chr2L_5_8300001 chr2L_8300001 RAL-73 114 chr2L 8723114 8723146 chr2L 8731491 8731523 Tirant 4 8377 1.0 2.5 1.8 1.4 8409 chr2L 8723114 intron raw - chr2L 8727318 intron raw - chr2L 8731523 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-73 115 chr2L 8789311 8789341 chr2L 8789384 8789417 7 76 2.0 2.5 2.2 2.2 106 chr2L 8789311 intergenic not near genes chr2L 8789364 intergenic not near genes chr2L 8789417 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-73 116 chr2L 8815747 8815777 chr2L 8815828 8815858 12 80 3.5 4.5 4.0 2.4 111 chr2L 8815747 intergenic not near genes chr2L 8815802 intergenic not near genes chr2L 8815858 intergenic not near genes chr2L_12_8815001 chr2L_8815001 RAL-73 117 chr2L 8960620 8960649 chr2L 8960958 8960987 4 338 0.5 1.0 0.8 2.2 367 chr2L 8960620 exon CG9525 - chr2L 8960804 exon CG9525 - chr2L 8960987 exon CG9525 - chr2L_4_8960001 chr2L_8960001 RAL-73 118 chr2L 8976223 8976251 chr2L 8976314 8976343 7 91 0.5 0.5 0.5 4.7 120 chr2L 8976223 intergenic not near genes chr2L 8976283 intergenic not near genes chr2L 8976343 intergenic not near genes chr2L_7_8975001 chr2L_8975001 RAL-73 119 chr2L 8993217 8993243 chr2L 8993318 8993344 6 102 20.5 13.5 17.0 0.3 127 chr2L 8993217 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993344 3` UTR CG9555 + chr2L_6_8990001 chr2L_8990001 RAL-73 120 chr2L 8997942 8997962 chr2L 8998057 8998074 12 116 4.5 7.5 6.0 1.7 132 chr2L 8997942 exon CG18661 + chr2L 8998008 exon CG18661 + chr2L 8998074 exon CG18661 + chr2L_12_8995001 chr2L_8995001 RAL-73 121 chr2L 9000278 9000307 chr2L 9007788 9007816 roo 6 7510 5.5 3.0 4.2 1.2 7538 chr2L 9000278 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-73 122 chr2L 9084337 9084340 chr2L 16217660 16217660 13 7133321 11.5 9.0 10.2 1.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-73 123 chr2L 9251146 9251167 chr2L 9251243 9251264 6 96 2.5 2.0 2.2 1.9 118 chr2L 9251146 intergenic aust -,borr - chr2L 9251205 intergenic aust -,borr - chr2L 9251264 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-73 124 chr2L 9274190 9274221 chr2L 9274272 9274302 6 81 3.5 2.0 2.8 1.6 112 chr2L 9274190 intron Ggamma30A + chr2L 9274246 intron Ggamma30A + chr2L 9274302 intron Ggamma30A + chr2L_6_9270001 chr2L_9270001 RAL-73 125 chr2L 9285024 9285043 chr2L 9285100 9285119 9 74 3.5 2.0 2.8 2.4 95 chr2L 9285024 intron Ggamma30A + chr2L 9285072 intron Ggamma30A + chr2L 9285119 intron Ggamma30A + chr2L_9_9285001 chr2L_9285001 RAL-73 126 chr2L 9287332 9287352 chr2L 9287426 9287449 5 95 3.0 2.5 2.8 1.3 117 chr2L 9287332 intron Ggamma30A + chr2L 9287390 intron Ggamma30A + chr2L 9287449 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-73 127 chr2L 9297380 9297405 chr2L 9297457 9297482 6 77 1.5 2.5 2.0 2.0 102 chr2L 9297380 3` UTR Ggamma30A + chr2L 9297431 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-73 128 chr2L 9304355 9304513 chr2L 9304439 9304591 5 80 0.5 0.0 0.2 4.2 236 chr2L 9304355 intergenic CR42844 - chr2L 9304473 3` UTR CR42844 - chr2L 9304591 3` UTR CR42844 - chr2L_5_9300001 chr2L_9300001 RAL-73 129 chr2L 9317543 9317561 chr2L 9317820 9317838 4 277 0.0 8.5 4.2 0.8 295 chr2L 9317543 intergenic not near genes chr2L 9317690 intergenic not near genes chr2L 9317838 intergenic not near genes chr2L_4_9315001 chr2L_9315001 RAL-73 130 chr2L 9393498 9393529 chr2L 9396465 9396496 jockey 7 2967 1.5 2.0 1.8 2.5 2998 chr2L 9393498 intron Shawl - chr2L 9394997 intron Shawl - chr2L 9396496 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-73 131 chr2L 9443058 9443094 chr2L 9443172 9443208 9 113 3.5 0.0 1.8 3.2 150 chr2L 9443058 intron numb + chr2L 9443133 intron numb + chr2L 9443208 intron numb + chr2L_9_9440001 chr2L_9440001 RAL-73 132 chr2L 9457075 9457097 chr2L 9457151 9457174 4 77 2.5 2.5 2.5 1.1 99 chr2L 9457075 intron numb + chr2L 9457124 intron numb + chr2L 9457174 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-73 133 chr2L 9490530 9490552 chr2L 9490610 9490632 9 80 2.0 3.0 2.5 2.6 102 chr2L 9490530 intergenic not near genes chr2L 9490581 intergenic not near genes chr2L 9490632 intergenic not near genes chr2L_9_9490001 chr2L_9490001 RAL-73 134 chr2L 9861619 9861643 chr2L 9861806 9861831 10 187 3.5 8.0 5.8 1.5 212 chr2L 9861619 intron nAChRalpha6 - chr2L 9861725 intron nAChRalpha6 - chr2L 9861831 intron nAChRalpha6 - chr2L_10_9860001 chr2L_9860001 RAL-73 135 chr2L 9956990 9957015 chr2L 9957261 9957286 7 271 3.0 2.0 2.5 2.0 296 chr2L 9956990 exon CG5846 - chr2L 9957138 5` UTR CG4658 + chr2L 9957286 5` UTR CG4658 + chr2L_7_9955001 chr2L_9955001 RAL-73 136 chr2L 9973731 9973755 chr2L 9980850 9980874 HMS-Beagle 16 7118 6.0 3.5 4.8 2.8 7143 chr2L 9973731 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980874 intergenic not near genes chr2L_16_9975001 chr2L_9975001 RAL-73 137 chr2L 9986355 9986384 chr2L 9986449 9986479 4 95 5.0 3.0 4.0 0.8 124 chr2L 9986355 intron bib + chr2L 9986417 intron bib + chr2L 9986479 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-73 138 chr2L 10051724 10051751 chr2L 10051809 10051836 7 84 5.0 5.5 5.2 1.1 112 chr2L 10051724 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051836 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-73 139 chr2L 10156330 10156354 chr2L 10163800 10163824 blood 9 7470 2.0 2.0 2.0 3.0 7494 chr2L 10156330 intron,3` UTR CG44153 -,CG4839 + chr2L 10160077 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-73 140 chr2L 10474387 10474404 chr2L 10474468 10474485 8 81 0.0 0.5 0.2 6.7 98 chr2L 10474387 intergenic RluA-1 - chr2L 10474436 intergenic RluA-1 - chr2L 10474485 intergenic RluA-1 - chr2L_8_10470001 chr2L_10470001 RAL-73 141 chr2L 10490275 10490307 chr2L 10490357 10490388 9 82 0.5 1.0 0.8 5.0 113 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490388 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_9_10490001 chr2L_10490001 RAL-73 142 chr2L 10572703 10572720 chr2L 10572784 10572801 7 81 5.5 1.0 3.2 1.7 98 chr2L 10572703 intron Trim9 + chr2L 10572752 intron Trim9 + chr2L 10572801 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-73 143 chr2L 10586507 10586537 chr2L 10586589 10586619 12 82 2.0 2.0 2.0 4.0 112 chr2L 10586507 intron Trim9 + chr2L 10586563 intron Trim9 + chr2L 10586619 intron Trim9 + chr2L_12_10585001 chr2L_10585001 RAL-73 144 chr2L 10704920 10704934 chr2L 10705015 10705020 5 93 4.0 2.5 3.2 1.2 100 chr2L 10704920 intron,3` UTR Lip2 -,CG6415 + chr2L 10704970 intron Lip2 - chr2L 10705020 intron Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-73 145 chr2L 10705449 10705480 chr2L 10705531 10705563 10 79 2.5 1.5 2.0 3.3 114 chr2L 10705449 exon Lip2 - chr2L 10705506 intron Lip2 - chr2L 10705563 intron Lip2 - chr2L_10_10705001 chr2L_10705001 RAL-73 146 chr2L 10811534 10811565 chr2L 10811926 10811957 5 392 1.5 0.5 1.0 2.5 423 chr2L 10811534 intron Nos - chr2L 10811746 intron Nos - chr2L 10811957 intron Nos - chr2L_5_10810001 chr2L_10810001 RAL-73 147 chr2L 10862844 10862873 chr2L 10864457 10864487 Rt1c 14 1612 6.0 3.5 4.8 2.4 1643 chr2L 10862844 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864487 3` UTR CR43807 - chr2L_14_10860001 chr2L_10860001 RAL-73 148 chr2L 10945075 10945093 chr2L 10945333 10945352 7 259 0.0 2.0 1.0 3.5 277 chr2L 10945075 intron dpr2 - chr2L 10945214 intron dpr2 - chr2L 10945352 intron dpr2 - chr2L_7_10945001 chr2L_10945001 RAL-73 149 chr2L 10946951 10946977 chr2L 10956166 10956192 roo 15 9215 0.5 9.0 4.8 2.6 9241 chr2L 10946951 intron dpr2 - chr2L 10951572 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_15_10950001 chr2L_10950001 RAL-73 150 chr2L 11145133 11145152 chr2L 11148265 11148284 4 3132 21.5 2.0 11.8 0.3 3151 chr2L 11145133 intron,exon Gyc32E -,CG31867 - chr2L 11146708 intron Gyc32E - chr2L 11148284 intron Gyc32E - chr2L_4_11145001 chr2L_11145001 RAL-73 151 chr2L 11418656 11418683 chr2L 11418735 11418762 10 79 1.5 3.0 2.2 3.1 106 chr2L 11418656 intergenic not near genes chr2L 11418709 intergenic not near genes chr2L 11418762 intergenic not near genes chr2L_10_11415001 chr2L_11415001 RAL-73 152 chr2L 11563635 11563669 chr2L 11568839 11568873 copia 11 5204 1.5 0.5 1.0 5.5 5238 chr2L 11563635 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_11_11565001 chr2L_11565001 RAL-73 153 chr2L 11614050 11614081 chr2L 11615545 11615576 hopper2 8 1492 3.5 1.0 2.2 2.5 1526 chr2L 11614050 intron kek2 + chr2L 11614813 intron kek2 + chr2L 11615576 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-73 154 chr2L 11633173 11633187 chr2L 11633271 11633288 4 100 1.5 2.0 1.8 1.4 115 chr2L 11633173 intergenic not near genes chr2L 11633230 intergenic not near genes chr2L 11633288 intergenic not near genes chr2L_4_11630001 chr2L_11630001 RAL-73 155 chr2L 11657975 11657986 chr2L 11658060 11658071 4 85 3.0 1.5 2.2 1.2 96 chr2L 11657975 3` UTR CG43167 + chr2L 11658023 intergenic CG43167 + chr2L 11658071 intergenic CG43167 + chr2L_4_11655001 chr2L_11655001 RAL-73 156 chr2L 11713506 11713540 chr2L 11720973 11721008 blood 8 7468 1.0 2.0 1.5 3.2 7502 chr2L 11713506 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-73 157 chr2L 11752875 11752890 chr2L 11753165 11753180 4 290 4.0 2.0 3.0 1.0 305 chr2L 11752875 intergenic CG42470 - chr2L 11753028 3` UTR CG42470 - chr2L 11753180 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-73 158 chr2L 11962162 11962179 chr2L 11962244 11962261 4 82 2.0 4.0 3.0 1.0 99 chr2L 11962162 intron CR43314 - chr2L 11962212 intron CR43314 - chr2L 11962261 intron CR43314 - chr2L_4_11960001 chr2L_11960001 RAL-73 159 chr2L 12487888 12487900 chr2L 12487969 12487981 4 81 3.5 2.0 2.8 1.1 93 chr2L 12487888 intron bun - chr2L 12487934 intron bun - chr2L 12487981 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-73 160 chr2L 12491493 12491508 chr2L 12491594 12491609 4 101 2.0 2.5 2.2 1.2 116 chr2L 12491493 intron bun - chr2L 12491551 intron bun - chr2L 12491609 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-73 161 chr2L 12529252 12529440 chr2L 12529383 12529516 4 90 0.0 0.0 0.0 4.0 264 chr2L 12529252 intron bun - chr2L 12529384 intron bun - chr2L 12529516 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-73 162 chr2L 12731060 12731093 chr2L 12735827 12735860 F-element 5 4767 1.0 2.0 1.5 2.0 4800 chr2L 12731060 intron MRP + chr2L 12733460 intron MRP + chr2L 12735860 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-73 163 chr2L 12751315 12751319 chr2L 12751398 12751402 4 83 4.5 8.5 6.5 0.5 87 chr2L 12751315 intergenic not near genes chr2L 12751358 intergenic not near genes chr2L 12751402 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-73 164 chr2L 12751320 12751339 chr2L 12751397 12751421 4 81 3.0 8.5 5.8 0.6 101 chr2L 12751320 intergenic not near genes chr2L 12751370 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-73 165 chr2L 12861693 12861729 chr2L 12863160 12863196 hobo 13 1466 1.5 4.5 3.0 3.2 1503 chr2L 12861693 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-73 166 chr2L 12894020 12894051 chr2L 12895486 12895507 hobo 8 1457 6.0 6.0 6.0 1.1 1487 chr2L 12894020 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895507 intergenic not near genes chr2L_8_12890001 chr2L_12890001 RAL-73 167 chr2L 12933848 12933880 chr2L 12941315 12941347 blood 7 7467 5.5 3.0 4.2 1.3 7499 chr2L 12933848 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941347 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-73 168 chr2L 12956021 12956059 chr2L 12956102 12956140 14 81 3.0 5.0 4.0 2.8 119 chr2L 12956021 intergenic not near genes chr2L 12956080 intergenic not near genes chr2L 12956140 intergenic not near genes chr2L_14_12955001 chr2L_12955001 RAL-73 169 chr2L 13045351 13045375 chr2L 13045433 13045460 5 84 1.5 5.0 3.2 1.2 109 chr2L 13045351 intron CG9932 - chr2L 13045406 intron CG9932 - chr2L 13045460 intron CG9932 - chr2L_5_13045001 chr2L_13045001 RAL-73 170 chr2L 13097619 13097645 chr2L 13097785 13097811 5 166 2.0 0.0 1.0 2.5 192 chr2L 13097619 intergenic CR45447 + chr2L 13097715 intergenic CR45447 + chr2L 13097811 intergenic not near genes chr2L_5_13095001 chr2L_13095001 RAL-73 171 chr2L 13154588 13154598 chr2L 13156043 13156053 6 1455 1.5 5.0 3.2 1.4 1465 chr2L 13154588 intergenic not near genes chr2L 13155320 intergenic not near genes chr2L 13156053 intergenic not near genes chr2L_6_13155001 chr2L_13155001 RAL-73 172 chr2L 13255297 13255300 chr2L 13255440 13255443 4 143 0.0 5.0 2.5 1.1 146 chr2L 13255297 intron CG31728 + chr2L 13255370 intron CG31728 + chr2L 13255443 exon CG31728 + chr2L_4_13255001 chr2L_13255001 RAL-73 173 chr2L 13266377 13266411 chr2L 13266465 13266499 8 88 2.0 1.0 1.5 3.2 122 chr2L 13266377 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266499 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-73 174 chr2L 13405648 13405674 chr2L 13410445 13410471 Doc 7 4796 3.0 0.0 1.5 2.8 4823 chr2L 13405648 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410471 intron CG7110 + chr2L_7_13405001 chr2L_13405001 RAL-73 175 chr2L 13425039 13425070 chr2L 13425127 13425158 12 87 2.5 3.0 2.8 3.2 119 chr2L 13425039 intron CG42784 + chr2L 13425098 intron CG42784 + chr2L 13425158 intron CG42784 + chr2L_12_13425001 chr2L_13425001 RAL-73 176 chr2L 13618046 13618072 chr2L 13618137 13618162 12 91 1.5 2.5 2.0 4.0 116 chr2L 13618046 intron kuz + chr2L 13618104 intron kuz + chr2L 13618162 intron kuz + chr2L_12_13615001 chr2L_13615001 RAL-73 177 chr2L 13699555 13699711 chr2L 13699632 13699930 30 142 5.5 1.5 3.5 6.7 375 chr2L 13699555 intron CG31814 - chr2L 13699742 intron CG31814 - chr2L 13699930 intron CG31814 - chr2L_30_13695001 chr2L_13695001 RAL-73 178 chr2L 13701899 13701918 chr2L 13701979 13701998 7 80 0.0 3.0 1.5 2.8 99 chr2L 13701899 intron CG31814 - chr2L 13701948 intron CG31814 - chr2L 13701998 intron CG31814 - chr2L_7_13700001 chr2L_13700001 RAL-73 179 chr2L 13741978 13742008 chr2L 13743023 13743053 18 1046 33.5 42.0 37.8 0.5 1075 chr2L 13741978 intergenic not near genes chr2L 13742516 intergenic not near genes chr2L 13743053 intergenic not near genes chr2L_18_13740001 chr2L_13740001 RAL-73 180 chr2L 13761293 13761315 chr2L 13761375 13761398 7 81 3.5 2.5 3.0 1.8 105 chr2L 13761293 intron TM9SF4 + chr2L 13761346 intron TM9SF4 + chr2L 13761398 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-73 181 chr2L 13761819 13761831 chr2L 13762930 13762941 Doc 6 1111 4.5 2.5 3.5 1.3 1122 chr2L 13761819 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-73 182 chr2L 13853084 13853097 chr2L 13862233 13862247 roo 5 9150 4.0 0.5 2.2 1.6 9163 chr2L 13853084 intron CenG1A + chr2L 13857666 intron CenG1A + chr2L 13862247 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-73 183 chr2L 13889843 13889866 chr2L 13889939 13889961 9 94 4.0 3.0 3.5 2.0 118 chr2L 13889843 intron CenG1A + chr2L 13889902 intron CenG1A + chr2L 13889961 intron CenG1A + chr2L_9_13885001 chr2L_13885001 RAL-73 184 chr2L 14010406 14010428 chr2L 14010482 14010504 6 76 0.0 1.5 0.8 3.3 98 chr2L 14010406 intergenic not near genes chr2L 14010455 intergenic not near genes chr2L 14010504 intergenic not near genes chr2L_6_14010001 chr2L_14010001 RAL-73 185 chr2L 14642574 14642587 chr2L 14651737 14651748 roo 5 9163 4.0 1.5 2.8 1.3 9174 chr2L 14642574 intron osp - chr2L 14647161 intron osp - chr2L 14651748 intron osp - chr2L_5_14645001 chr2L_14645001 RAL-73 186 chr2L 14778810 14778833 chr2L 14779098 14779121 5 288 2.5 11.5 7.0 0.6 311 chr2L 14778810 intergenic not near genes chr2L 14778966 intergenic not near genes chr2L 14779121 intergenic not near genes chr2L_5_14775001 chr2L_14775001 RAL-73 187 chr2L 14803878 14803907 chr2L 14809081 14809110 copia 9 5203 2.5 1.0 1.8 3.2 5232 chr2L 14803878 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-73 188 chr2L 14840978 14841000 chr2L 14841065 14841087 4 86 1.0 0.5 0.8 2.2 109 chr2L 14840978 3` UTR CR43805 - chr2L 14841032 3` UTR CR43805 - chr2L 14841087 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-73 189 chr2L 14889955 14889986 chr2L 14890380 14890411 jockey 4 425 2.5 4.5 3.5 0.9 456 chr2L 14889955 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890411 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-73 190 chr2L 15000857 15000883 chr2L 15000983 15001011 5 126 14.5 8.5 11.5 0.4 154 chr2L 15000857 intergenic not near genes chr2L 15000934 intergenic not near genes chr2L 15001011 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-73 191 chr2L 15219685 15219693 chr2L 15219760 15219766 4 76 4.5 7.0 5.8 0.6 81 chr2L 15219685 intergenic not near genes chr2L 15219726 intergenic not near genes chr2L 15219766 intergenic not near genes chr2L_4_15215001 chr2L_15215001 RAL-73 192 chr2L 15371605 15371623 chr2L 15371823 15371840 5 218 1.0 2.5 1.8 1.8 235 chr2L 15371605 intergenic not near genes chr2L 15371722 intergenic not near genes chr2L 15371840 intergenic not near genes chr2L_5_15370001 chr2L_15370001 RAL-73 193 chr2L 15586408 15586441 chr2L 15593460 15593493 297 6 7052 1.5 1.0 1.2 2.7 7085 chr2L 15586408 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593493 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-73 194 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 19.0 9.0 14.0 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-73 195 chr2L 16141171 16141188 chr2L 16146378 16146395 copia 7 5207 0.5 1.0 0.8 3.9 5224 chr2L 16141171 intergenic not near genes chr2L 16143783 intergenic not near genes chr2L 16146395 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-73 196 chr2L 16211152 16211167 chr2L 16211241 16211256 4 89 4.0 1.0 2.5 1.1 104 chr2L 16211152 intergenic CG31819 + chr2L 16211204 intergenic CG31819 + chr2L 16211256 intergenic CG31819 + chr2L_4_16210001 chr2L_16210001 RAL-73 197 chr2L 9084337 9084340 chr2L 16217660 16217660 14 7133321 11.5 9.0 10.2 1.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-73 198 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 19.0 9.0 14.0 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-73 199 chr2L 16280256 16280284 chr2L 16281425 16281455 1360 11 1171 2.5 3.0 2.8 2.9 1199 chr2L 16280256 intron crp - chr2L 16280856 intron crp - chr2L 16281455 intron crp - chr2L_11_16280001 chr2L_16280001 RAL-73 200 chr2L 16712718 16712725 chr2L 16712926 16712933 5 208 2.5 1.5 2.0 1.7 215 chr2L 16712718 intron CG31808 - chr2L 16712826 intron CG31808 - chr2L 16712933 intron CG31808 - chr2L_5_16710001 chr2L_16710001 RAL-73 201 chr2L 16923031 16923052 chr2L 16923424 16923445 7 392 2.0 4.0 3.0 1.8 414 chr2L 16923031 intergenic not near genes chr2L 16923238 intergenic not near genes chr2L 16923445 intergenic not near genes chr2L_7_16920001 chr2L_16920001 RAL-73 202 chr2L 16952684 16952717 chr2L 16952793 16952826 8 109 1.5 1.0 1.2 3.6 142 chr2L 16952684 intergenic not near genes chr2L 16952755 intergenic not near genes chr2L 16952826 intergenic not near genes chr2L_8_16950001 chr2L_16950001 RAL-73 203 chr2L 16971473 16971504 chr2L 16971550 16971581 8 73 2.5 2.5 2.5 2.3 108 chr2L 16971473 intergenic not near genes chr2L 16971527 intergenic not near genes chr2L 16971581 intergenic not near genes chr2L_8_16970001 chr2L_16970001 RAL-73 204 chr2L 17005412 17005433 chr2L 17005509 17005530 9 97 3.5 4.0 3.8 1.9 118 chr2L 17005412 intergenic not near genes chr2L 17005471 intergenic not near genes chr2L 17005530 intergenic not near genes chr2L_9_17005001 chr2L_17005001 RAL-73 205 chr2L 17117312 17117323 chr2L 17117389 17117400 4 77 0.0 1.5 0.8 2.2 88 chr2L 17117312 intergenic not near genes chr2L 17117356 intergenic not near genes chr2L 17117400 intergenic not near genes chr2L_4_17115001 chr2L_17115001 RAL-73 206 chr2L 17122776 17122805 chr2L 17122861 17122890 7 81 2.5 1.5 2.0 2.3 114 chr2L 17122776 intergenic not near genes chr2L 17122833 intergenic CG31784 - chr2L 17122890 intergenic CG31784 - chr2L_7_17120001 chr2L_17120001 RAL-73 207 chr2L 17260882 17260904 chr2L 17260964 17260985 7 82 2.0 0.5 1.2 3.2 103 chr2L 17260882 intergenic beat-IIIc - chr2L 17260934 intergenic beat-IIIc - chr2L 17260985 intergenic beat-IIIc - chr2L_7_17260001 chr2L_17260001 RAL-73 208 chr2L 17273190 17273215 chr2L 17277973 17277995 F-element 9 4782 5.5 2.5 4.0 1.8 4805 chr2L 17273190 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277995 intergenic not near genes chr2L_9_17275001 chr2L_17275001 RAL-73 209 chr2L 17327915 17327928 chr2L 17328001 17328014 6 86 3.0 2.5 2.8 1.6 99 chr2L 17327915 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328014 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-73 210 chr2L 17626480 17626493 chr2L 17626856 17626866 4 376 3.5 1.5 2.5 1.1 386 chr2L 17626480 intergenic CG15147 - chr2L 17626673 intergenic CG15147 - chr2L 17626866 intergenic CG15147 - chr2L_4_17625001 chr2L_17625001 RAL-73 211 chr2L 17724913 17724938 chr2L 17725004 17725029 4 91 2.0 2.0 2.0 1.3 116 chr2L 17724913 intron CadN - chr2L 17724971 intron CadN - chr2L 17725029 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-73 212 chr2L 17819921 17819945 chr2L 17825124 17825147 copia 4 5203 0.5 3.0 1.8 1.4 5226 chr2L 17819921 intron CadN2 - chr2L 17822534 intron CadN2 - chr2L 17825147 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-73 213 chr2L 17911962 17911979 chr2L 17914148 17914165 pogo 4 2186 4.5 1.0 2.8 1.1 2203 chr2L 17911962 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-73 214 chr2L 17941851 17941872 chr2L 17941935 17941956 6 83 1.0 5.0 3.0 1.5 105 chr2L 17941851 intergenic not near genes chr2L 17941904 intergenic not near genes chr2L 17941956 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-73 215 chr2L 18051880 18051909 chr2L 18061027 18061034 roo 5 9142 3.0 0.5 1.8 1.8 9154 chr2L 18051880 intron rdo + chr2L 18056457 intron rdo + chr2L 18061034 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-73 216 chr2L 18225794 18225833 chr2L 18226424 18226462 12 629 0.5 0.0 0.2 10.0 668 chr2L 18225794 intron CG42750 - chr2L 18226128 intron CG42750 - chr2L 18226462 intron CG42750 - chr2L_12_18225001 chr2L_18225001 RAL-73 217 chr2L 18326918 18326943 chr2L 18327028 18327052 5 110 0.5 2.5 1.5 2.0 134 chr2L 18326918 intron Fas3 + chr2L 18326985 intron Fas3 + chr2L 18327052 intron Fas3 + chr2L_5_18325001 chr2L_18325001 RAL-73 218 chr2L 18344621 18344654 chr2L 18344709 18344742 12 88 0.0 3.5 1.8 4.3 121 chr2L 18344621 intron Fas3 + chr2L 18344682 intron Fas3 + chr2L 18344742 intron Fas3 + chr2L_12_18340001 chr2L_18340001 RAL-73 219 chr2L 18666782 18666788 chr2L 18669963 18669970 4 3180 18.5 22.0 20.2 0.2 3188 chr2L 18666782 intergenic CG43338 - chr2L 18668376 exon CG43338 - chr2L 18669970 intron CG43338 - chr2L_4_18665001 chr2L_18665001 RAL-73 220 chr2L 18670538 18670554 chr2L 18670838 18670854 6 300 5.0 2.0 3.5 1.3 316 chr2L 18670538 intron CG43338 - chr2L 18670696 intron CG43338 - chr2L 18670854 intron CG43338 - chr2L_6_18670001 chr2L_18670001 RAL-73 221 chr2L 18790283 18790320 chr2L 18791105 18791140 13 821 22.0 10.0 16.0 0.8 857 chr2L 18790283 intron ham - chr2L 18790712 intron ham - chr2L 18791140 intron ham - chr2L_13_18790001 chr2L_18790001 RAL-73 222 chr2L 18812560 18812587 chr2L 18812823 18812850 5 263 1.5 2.0 1.8 1.8 290 chr2L 18812560 intergenic CG17325 +,CG42305 + chr2L 18812705 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812850 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-73 223 chr2L 18883851 18883885 chr2L 18883933 18883967 8 82 0.5 2.5 1.5 3.2 116 chr2L 18883851 intergenic not near genes chr2L 18883909 intergenic not near genes chr2L 18883967 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-73 224 chr2L 18886884 18886918 chr2L 18887165 18887199 14 280 1.0 2.5 1.8 5.0 315 chr2L 18886884 intergenic not near genes chr2L 18887042 intergenic not near genes chr2L 18887199 intergenic not near genes chr2L_14_18885001 chr2L_18885001 RAL-73 225 chr2L 19121044 19121072 chr2L 19121122 19121150 5 78 2.5 0.5 1.5 2.0 106 chr2L 19121044 intergenic l(2)37Cc - chr2L 19121097 intergenic l(2)37Cc - chr2L 19121150 intergenic l(2)37Cc - chr2L_5_19120001 chr2L_19120001 RAL-73 226 chr2L 19121554 19121565 chr2L 19121635 19121646 5 81 5.0 12.5 8.8 0.5 92 chr2L 19121554 3` UTR l(2)37Cc - chr2L 19121600 3` UTR l(2)37Cc - chr2L 19121646 3` UTR l(2)37Cc - chr2L_5_19120001 chr2L_19120001 RAL-73 227 chr2L 19182973 19183002 chr2L 19183052 19183081 10 79 2.0 2.5 2.2 3.1 108 chr2L 19182973 intergenic CR17567 -,CG42688 - chr2L 19183027 intergenic CR17567 -,CG42688 - chr2L 19183081 3` UTR CR17567 - chr2L_10_19180001 chr2L_19180001 RAL-73 228 chr2L 19246106 19246137 chr2L 19246189 19246210 10 77 4.5 3.0 3.8 2.1 104 chr2L 19246106 intergenic not near genes chr2L 19246158 intergenic not near genes chr2L 19246210 intergenic not near genes chr2L_10_19245001 chr2L_19245001 RAL-73 229 chr2L 19345013 19345047 chr2L 19357222 19357253 blood 5 12208 0.5 3.0 1.8 1.8 12240 chr2L 19345013 intron dnt - chr2L 19351133 intron dnt - chr2L 19357253 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-73 230 chr2L 19357550 19357565 chr2L 19357640 19357655 11 89 2.5 5.0 3.8 2.3 105 chr2L 19357550 intron dnt - chr2L 19357602 intron dnt - chr2L 19357655 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-73 231 chr2L 19361886 19361908 chr2L 19361973 19361995 7 87 1.5 2.0 1.8 2.5 109 chr2L 19361886 intron dnt - chr2L 19361940 intron dnt - chr2L 19361995 intron dnt - chr2L_7_19360001 chr2L_19360001 RAL-73 232 chr2L 19544590 19544628 chr2L 19544667 19544671 11 71 6.0 5.0 5.5 1.7 81 chr2L 19544590 exon ref(2)P + chr2L 19544630 exon ref(2)P + chr2L 19544671 exon ref(2)P + chr2L_11_19540001 chr2L_19540001 RAL-73 233 chr2L 19562543 19562558 chr2L 19562623 19562638 7 80 0.0 2.0 1.0 3.5 95 chr2L 19562543 intron Tep5 + chr2L 19562590 intron Tep5 + chr2L 19562638 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-73 234 chr2L 19620092 19620131 chr2L 19621081 19621120 jockey 21 988 3.5 4.5 4.0 4.2 1028 chr2L 19620092 intron Lar + chr2L 19620606 intron Lar + chr2L 19621120 intron Lar + chr2L_21_19620001 chr2L_19620001 RAL-73 235 chr2L 19690329 19690354 chr2L 19690404 19690416 12 74 3.5 3.5 3.5 2.7 87 chr2L 19690329 intron Lar + chr2L 19690372 intron Lar + chr2L 19690416 intron Lar + chr2L_12_19690001 chr2L_19690001 RAL-73 236 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 11 9136 2.5 0.5 1.5 4.4 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_11_19705001 chr2L_19705001 RAL-73 237 chr2L 19722767 19722777 chr2L 19723355 19723365 4 586 6.0 2.5 4.2 0.8 598 chr2L 19722767 intron Lar + chr2L 19723066 intron Lar + chr2L 19723365 intron Lar + chr2L_4_19720001 chr2L_19720001 RAL-73 238 chr2L 19791157 19791176 chr2L 19791245 19791264 13 88 5.0 6.5 5.8 1.9 107 chr2L 19791157 intron CdGAPr - chr2L 19791210 intron CdGAPr - chr2L 19791264 intron CdGAPr - chr2L_13_19790001 chr2L_19790001 RAL-73 239 chr2L 19794017 19794046 chr2L 19794101 19794130 8 84 2.0 4.5 3.2 1.9 113 chr2L 19794017 intron fs(2)ltoPP43 - chr2L 19794074 intron fs(2)ltoPP43 - chr2L 19794130 intron fs(2)ltoPP43 - chr2L_8_19790001 chr2L_19790001 RAL-73 240 chr2L 19856392 19856425 chr2L 19856637 19856670 8 243 1.0 5.0 3.0 2.0 278 chr2L 19856392 intron sick + chr2L 19856531 intron sick + chr2L 19856670 intron sick + chr2L_8_19855001 chr2L_19855001 RAL-73 241 chr2L 19871553 19871570 chr2L 19871640 19871657 8 87 2.0 4.0 3.0 2.0 104 chr2L 19871553 intron sick + chr2L 19871605 intron sick + chr2L 19871657 intron sick + chr2L_8_19870001 chr2L_19870001 RAL-73 242 chr2L 19972933 19972965 chr2L 19973021 19973053 7 88 1.0 4.0 2.5 2.0 120 chr2L 19972933 intron CG43861 - chr2L 19972993 intron CG43861 - chr2L 19973053 intron CG43861 - chr2L_7_19970001 chr2L_19970001 RAL-73 243 chr2L 19994645 19994661 chr2L 19994840 19994840 9 194 0.5 6.0 3.2 2.1 195 chr2L 19994645 intron CG43861 - chr2L 19994742 intron CG43861 - chr2L 19994840 intron CG43861 - chr2L_9_19990001 chr2L_19990001 RAL-73 244 chr2L 20041429 20041463 chr2L 20041514 20041548 11 85 6.0 5.5 5.8 1.6 119 chr2L 20041429 intron sNPF + chr2L 20041488 intron sNPF + chr2L 20041548 intron sNPF + chr2L_11_20040001 chr2L_20040001 RAL-73 245 chr2L 20046553 20046587 chr2L 20046642 20046659 9 86 3.0 4.0 3.5 2.0 106 chr2L 20046553 intron sNPF + chr2L 20046606 intron sNPF + chr2L 20046659 intron sNPF + chr2L_9_20045001 chr2L_20045001 RAL-73 246 chr2L 20079516 20079545 chr2L 20079637 20079665 5 121 1.5 0.5 1.0 2.5 149 chr2L 20079516 intron,intron neb +,fok - chr2L 20079590 intron,intron neb +,fok - chr2L 20079665 intron,intron neb +,fok - chr2L_5_20075001 chr2L_20075001 RAL-73 247 chr2L 20085465 20085495 chr2L 20085557 20085587 11 91 1.5 3.0 2.2 3.4 122 chr2L 20085465 intron neb + chr2L 20085526 intron neb + chr2L 20085587 intron neb + chr2L_11_20085001 chr2L_20085001 RAL-73 248 chr2L 20127481 20127509 chr2L 20127708 20127736 5 227 1.0 1.5 1.2 2.3 255 chr2L 20127481 intergenic not near genes chr2L 20127608 intergenic not near genes chr2L 20127736 intergenic not near genes chr2L_5_20125001 chr2L_20125001 RAL-73 249 chr2L 20376073 20376093 chr2L 20376192 20376212 6 119 3.0 3.0 3.0 1.5 139 chr2L 20376073 intergenic not near genes chr2L 20376142 intergenic not near genes chr2L 20376212 intergenic not near genes chr2L_6_20375001 chr2L_20375001 RAL-73 250 chr2L 20429677 20429686 chr2L 20429791 20429800 4 114 4.5 2.0 3.2 1.0 123 chr2L 20429677 intron CG31688 + chr2L 20429738 intron CG31688 + chr2L 20429800 intron CG31688 + chr2L_4_20425001 chr2L_20425001 RAL-73 251 chr2L 20521710 20521731 chr2L 20522343 20522364 6 633 21.0 7.0 14.0 0.4 654 chr2L 20521710 intergenic not near genes chr2L 20522037 intergenic not near genes chr2L 20522364 intergenic not near genes chr2L_6_20520001 chr2L_20520001 RAL-73 252 chr2L 20552786 20552819 chr2L 20553025 20553056 7 237 6.0 1.5 3.8 1.5 270 chr2L 20552786 intergenic not near genes chr2L 20552921 intergenic not near genes chr2L 20553056 intergenic not near genes chr2L_7_20550001 chr2L_20550001 RAL-73 253 chr2L 20568661 20568687 chr2L 20569051 20569076 X-element 7 390 2.5 3.5 3.0 1.8 415 chr2L 20568661 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-73 254 chr2L 20576223 20576252 chr2L 20583691 20583720 blood 5 7468 2.5 1.0 1.8 1.8 7497 chr2L 20576223 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583720 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-73 255 chr2L 20597090 20597119 chr2L 20597166 20597196 9 74 2.5 6.5 4.5 1.6 106 chr2L 20597090 intron CR44909 - chr2L 20597143 intron CR44909 - chr2L 20597196 intron CR44909 - chr2L_9_20595001 chr2L_20595001 RAL-73 256 chr2L 20611235 20611265 chr2L 20611323 20611353 8 88 0.0 3.0 1.5 3.2 118 chr2L 20611235 intron CR44909 - chr2L 20611294 intron CR44909 - chr2L 20611353 intron CR44909 - chr2L_8_20610001 chr2L_20610001 RAL-73 257 chr2L 20623832 20623850 chr2L 20623911 20623925 4 74 1.0 4.0 2.5 1.1 93 chr2L 20623832 intron CR44909 - chr2L 20623878 intron CR44909 - chr2L 20623925 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-73 258 chr2L 20715147 20715177 chr2L 20715383 20715414 8 236 1.5 3.0 2.2 2.5 267 chr2L 20715147 intergenic not near genes chr2L 20715280 intergenic not near genes chr2L 20715414 intergenic not near genes chr2L_8_20715001 chr2L_20715001 RAL-73 259 chr2L 20814834 20814861 chr2L 20817531 20817558 6 2698 30.0 3.5 16.8 0.3 2724 chr2L 20814834 exon CG33322 - chr2L 20816196 5` UTR CG33322 - chr2L 20817558 intergenic CheB38a -,CheB38b - chr2L_6_20815001 chr2L_20815001 RAL-73 260 chr2L 20821499 20821522 chr2L 20821647 20821670 5 148 3.0 2.5 2.8 1.3 171 chr2L 20821499 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-73 261 chr2L 20967091 20967105 chr2L 20967177 20967191 7 86 1.0 1.5 1.2 3.2 100 chr2L 20967091 3` UTR CG42238 - chr2L 20967141 3` UTR CG42238 - chr2L 20967191 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-73 262 chr2L 21020275 21020309 chr2L 21023952 21023986 NOF 11 3676 1.5 3.5 2.5 3.1 3711 chr2L 21020275 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-73 263 chr2L 21781865 21781892 chr2L 21781953 21781981 4 89 1.0 1.0 1.0 2.0 116 chr2L 21781865 intron CG31612 - chr2L 21781923 intron CG31612 - chr2L 21781981 intron CG31612 - chr2L_4_21780001 chr2L_21780001 RAL-73 264 chr2L 21809014 21809046 chr2L 21809220 21809252 5 202 1.5 1.5 1.5 2.0 238 chr2L 21809014 intergenic not near genes chr2L 21809133 intergenic not near genes chr2L 21809252 intergenic not near genes chr2L_5_21805001 chr2L_21805001 RAL-73 265 chr2L 21981684 21981715 chr2L 21990848 21990880 roo 10 9165 2.0 3.5 2.8 2.6 9196 chr2L 21981684 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-73 266 chr2L 22179564 22179575 chr2L 22179641 22179652 4 77 2.5 6.0 4.2 0.8 88 chr2L 22179564 intron CG3635 + chr2L 22179608 intron CG3635 + chr2L 22179652 intron CG3635 + chr2L_4_22175001 chr2L_22175001 RAL-73 267 chr2L 22256846 22256870 chr2L 22256934 22256958 4 88 1.5 2.0 1.8 1.4 112 chr2L 22256846 intron Tif-IA + chr2L 22256902 intron Tif-IA + chr2L 22256958 intron Tif-IA + chr2L_4_22255001 chr2L_22255001 RAL-73 268 chr2R 529331 529357 chr2R 537954 537981 Max-element 5 8623 1.5 1.0 1.2 2.3 8650 chr2R 529331 intron CG40378 + chr2R 533656 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-73 269 chr2R 1082373 1082381 chr2R 1087149 1087157 Doc 4 4776 4.5 4.5 4.5 0.7 4784 chr2R 1082373 intron rl + chr2R 1084765 intron rl + chr2R 1087157 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-73 270 chr2R 3998872 3998877 chr2R 6487058 6487063 4 2488186 15.5 26.0 20.8 0.2 2488191 chr2R 3998872 intergenic not near genes chr2R 5242968 intron Nipped-A - chr2R 6487063 intergenic not near genes chr2R_4_5240001 chr2R_5240001 RAL-73 271 chr2R 4312950 4312979 chr2R 4313034 4313063 5 84 0.5 2.5 1.5 2.0 113 chr2R 4312950 intergenic not near genes chr2R 4313006 intergenic not near genes chr2R 4313063 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-73 272 chr2R 4603340 4603375 chr2R 4603421 4603453 11 80 2.5 3.5 3.0 2.8 113 chr2R 4603340 intron p120ctn + chr2R 4603396 intron p120ctn + chr2R 4603453 intron p120ctn + chr2R_11_4600001 chr2R_4600001 RAL-73 273 chr2R 4621316 4621335 chr2R 4621856 4621875 4 540 0.5 2.0 1.2 1.8 559 chr2R 4621316 3` UTR CR44101 - chr2R 4621596 3` UTR CR44101 - chr2R 4621875 3` UTR CR44101 - chr2R_4_4620001 chr2R_4620001 RAL-73 274 chr2R 4622955 4622983 chr2R 4624114 4624142 1360 6 1159 2.5 2.0 2.2 1.9 1187 chr2R 4622955 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624142 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-73 275 chr2R 4624646 4624664 chr2R 4626551 4626569 Bica 5 1905 4.0 4.5 4.2 1.0 1923 chr2R 4624646 intergenic not near genes chr2R 4625608 intergenic not near genes chr2R 4626569 intergenic not near genes chr2R_5_4625001 chr2R_4625001 RAL-73 276 chr2R 4783416 4783453 chr2R 4783494 4783530 19 78 3.5 3.0 3.2 4.5 114 chr2R 4783416 intergenic not near genes chr2R 4783473 intergenic not near genes chr2R 4783530 intergenic not near genes chr2R_19_4780001 chr2R_4780001 RAL-73 277 chr2R 4908910 4908942 chr2R 4908998 4909030 8 88 1.5 1.5 1.5 3.2 120 chr2R 4908910 intergenic not near genes chr2R 4908970 intergenic not near genes chr2R 4909030 intergenic not near genes chr2R_8_4905001 chr2R_4905001 RAL-73 278 chr2R 4957036 4957047 chr2R 4957139 4957150 4 103 1.5 4.0 2.8 1.1 114 chr2R 4957036 intron Ir41a + chr2R 4957093 intron Ir41a + chr2R 4957150 intron Ir41a + chr2R_4_4955001 chr2R_4955001 RAL-73 279 chr2R 5103060 5103074 chr2R 5103142 5103155 9 82 5.0 6.0 5.5 1.4 95 chr2R 5103060 intergenic not near genes chr2R 5103108 intergenic not near genes chr2R 5103155 intergenic not near genes chr2R_9_5100001 chr2R_5100001 RAL-73 280 chr2R 5396260 5396285 chr2R 5396498 5396523 7 238 13.5 14.0 13.8 0.5 263 chr2R 5396260 intergenic not near genes chr2R 5396392 intergenic not near genes chr2R 5396523 intergenic not near genes chr2R_7_5395001 chr2R_5395001 RAL-73 281 chr2R 5472367 5472390 chr2R 5472461 5472477 5 93 1.5 1.5 1.5 2.0 110 chr2R 5472367 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472477 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-73 282 chr2R 5473369 5473400 chr2R 5473463 5473495 7 95 1.5 2.5 2.0 2.3 126 chr2R 5473369 intron CG30440 - chr2R 5473432 intron CG30440 - chr2R 5473495 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-73 283 chr2R 5782940 5782969 chr2R 5783024 5783053 6 84 4.0 3.0 3.5 1.3 113 chr2R 5782940 intergenic ZnT41F - chr2R 5782996 intergenic ZnT41F - chr2R 5783053 intergenic ZnT41F - chr2R_6_5780001 chr2R_5780001 RAL-73 284 chr2R 5861287 5861320 chr2R 5861408 5861441 13 119 1.0 1.0 1.0 6.5 154 chr2R 5861287 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861441 intergenic not near genes chr2R_13_5860001 chr2R_5860001 RAL-73 285 chr2R 5869281 5869305 chr2R 5874357 5874381 flea 4 5076 0.5 0.0 0.2 3.3 5100 chr2R 5869281 intergenic not near genes chr2R 5871831 intergenic not near genes chr2R 5874381 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-73 286 chr2R 6016792 6016820 chr2R 6016876 6016904 4 84 0.0 0.5 0.2 3.3 112 chr2R 6016792 intergenic not near genes chr2R 6016848 intergenic not near genes chr2R 6016904 intergenic not near genes chr2R_4_6015001 chr2R_6015001 RAL-73 287 chr2R 6096723 6096746 chr2R 6101918 6101944 BS 8 5194 7.0 3.5 5.2 1.3 5221 chr2R 6096723 intron EcR - chr2R 6099334 intron EcR - chr2R 6101944 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-73 288 chr2R 6129345 6129354 chr2R 6129423 6129432 5 78 0.0 3.5 1.8 1.8 87 chr2R 6129345 intron EcR - chr2R 6129388 intron EcR - chr2R 6129432 intron EcR - chr2R_5_6125001 chr2R_6125001 RAL-73 289 chr2R 6530767 6530795 chr2R 6530847 6530875 5 80 1.0 0.0 0.5 3.3 108 chr2R 6530767 intron jing + chr2R 6530821 intron jing + chr2R 6530875 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-73 290 chr2R 6561855 6561885 chr2R 6561939 6561967 7 82 2.5 3.5 3.0 1.8 112 chr2R 6561855 intron jing + chr2R 6561911 intron jing + chr2R 6561967 intron jing + chr2R_7_6560001 chr2R_6560001 RAL-73 291 chr2R 6685879 6685893 chr2R 6685961 6685975 5 82 1.0 2.0 1.5 2.0 96 chr2R 6685879 intron,intron CG9422 +,Tdc2 - chr2R 6685927 intron,intron CG9422 +,Tdc2 - chr2R 6685975 intron,intron CG9422 +,Tdc2 - chr2R_5_6685001 chr2R_6685001 RAL-73 292 chr2R 6712586 6712598 chr2R 6712683 6712693 5 97 8.0 1.5 4.8 0.9 107 chr2R 6712586 intron,intron CG3409 -,CG45092 - chr2R 6712640 intron,intron CG3409 -,CG45092 - chr2R 6712693 intron,intron CG3409 -,CG45092 - chr2R_5_6710001 chr2R_6710001 RAL-73 293 chr2R 6797079 6797112 chr2R 6797172 6797205 20 91 0.5 2.0 1.2 9.1 126 chr2R 6797079 5` UTR Epac - chr2R 6797142 5` UTR Epac - chr2R 6797205 5` UTR Epac - chr2R_20_6795001 chr2R_6795001 RAL-73 294 chr2R 6861576 6861603 chr2R 6861654 6861681 6 78 1.0 1.5 1.2 2.7 105 chr2R 6861576 intergenic coro - chr2R 6861628 intergenic coro - chr2R 6861681 intergenic coro - chr2R_6_6860001 chr2R_6860001 RAL-73 295 chr2R 7128605 7128627 chr2R 7129407 7129429 9 802 6.0 17.5 11.8 0.7 824 chr2R 7128605 exon Cyp9b1 - chr2R 7129017 exon Cyp9b1 - chr2R 7129429 exon Cyp9b1 - chr2R_9_7125001 chr2R_7125001 RAL-73 296 chr2R 7128651 7128685 chr2R 7129536 7129570 7 889 12.0 33.5 22.8 0.3 919 chr2R 7128651 exon Cyp9b1 - chr2R 7129110 exon Cyp9b1 - chr2R 7129570 intron Cyp9b1 - chr2R_7_7125001 chr2R_7125001 RAL-73 297 chr2R 7143631 7143661 chr2R 7143740 7143770 8 109 3.5 1.5 2.5 2.3 139 chr2R 7143631 intergenic not near genes chr2R 7143700 intergenic not near genes chr2R 7143770 intergenic not near genes chr2R_8_7140001 chr2R_7140001 RAL-73 298 chr2R 7156174 7156196 chr2R 7158028 7158050 16 1855 26.5 27.5 27.0 0.6 1876 chr2R 7156174 intron pk + chr2R 7157112 intron,exon pk +,nec - chr2R 7158050 intron,exon pk +,nec - chr2R_16_7155001 chr2R_7155001 RAL-73 299 chr2R 7187378 7187386 chr2R 7187752 7187760 4 374 2.0 3.0 2.5 1.1 382 chr2R 7187378 intron pk + chr2R 7187569 intron pk + chr2R 7187760 intron pk + chr2R_4_7185001 chr2R_7185001 RAL-73 300 chr2R 7235820 7235853 chr2R 7240912 7240935 jockey 8 5091 1.5 3.5 2.5 2.3 5115 chr2R 7235820 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240935 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-73 301 chr2R 7371749 7371777 chr2R 7371852 7371881 4 104 1.5 3.0 2.2 1.2 132 chr2R 7371749 intron Dscam1 - chr2R 7371815 intron Dscam1 - chr2R 7371881 intron Dscam1 - chr2R_4_7370001 chr2R_7370001 RAL-73 302 chr2R 7723968 7723990 chr2R 7724049 7724071 6 81 1.0 1.5 1.2 2.7 103 chr2R 7723968 intron CG18812 - chr2R 7724020 intron CG18812 - chr2R 7724071 intron CG18812 - chr2R_6_7720001 chr2R_7720001 RAL-73 303 chr2R 7743489 7743508 chr2R 7743570 7743589 6 81 1.5 2.0 1.8 2.1 100 chr2R 7743489 intron,intron CG30497 -,CG45093 - chr2R 7743539 intron,intron CG30497 -,CG45093 - chr2R 7743589 intron,intron CG30497 -,CG45093 - chr2R_6_7740001 chr2R_7740001 RAL-73 304 chr2R 7760297 7760301 chr2R 7760430 7760436 5 135 2.0 10.5 6.2 0.7 139 chr2R 7760297 intron,intron CG30497 -,CG45093 - chr2R 7760366 intron,intron CG30497 -,CG45093 - chr2R 7760436 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-73 305 chr2R 7815672 7815701 chr2R 7822140 7822170 Burdock 5 6469 2.5 3.5 3.0 1.2 6498 chr2R 7815672 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822170 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-73 306 chr2R 7869186 7869216 chr2R 7873972 7874001 Doc 8 4786 3.0 3.5 3.2 1.9 4815 chr2R 7869186 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874001 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-73 307 chr2R 7878655 7878670 chr2R 7878974 7878989 4 319 2.0 0.5 1.2 1.8 334 chr2R 7878655 intron Dgk - chr2R 7878822 intron Dgk - chr2R 7878989 intron Dgk - chr2R_4_7875001 chr2R_7875001 RAL-73 308 chr2R 7916430 7916457 chr2R 7916515 7916542 6 85 0.5 2.0 1.2 2.7 112 chr2R 7916430 5` UTR CG12159 - chr2R 7916486 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_6_7915001 chr2R_7915001 RAL-73 309 chr2R 8015664 8015684 chr2R 8017671 8017706 7 2020 2.0 4.5 3.2 1.7 2042 chr2R 8015664 intergenic mir-4981 + chr2R 8016685 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-73 310 chr2R 8076679 8076708 chr2R 8076759 8076788 4 80 3.0 0.5 1.8 1.4 109 chr2R 8076679 intron lig + chr2R 8076734 intron lig + chr2R 8076788 intron lig + chr2R_4_8075001 chr2R_8075001 RAL-73 311 chr2R 8166539 8166568 chr2R 8168728 8168757 13 2190 40.0 46.0 43.0 0.3 2218 chr2R 8166539 exon Rs1 + chr2R 8167648 exon Rs1 + chr2R 8168757 exon Gasz + chr2R_13_8165001 chr2R_8165001 RAL-73 312 chr2R 8330860 8330890 chr2R 8331346 8331376 roo 7 486 2.0 1.5 1.8 2.5 516 chr2R 8330860 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-73 313 chr2R 8398233 8398244 chr2R 8402997 8403025 Doc 4 4777 4.0 2.5 3.2 1.0 4792 chr2R 8398233 intron CG2121 - chr2R 8400629 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-73 314 chr2R 8419366 8419388 chr2R 8419449 8419470 6 83 1.5 2.0 1.8 2.1 104 chr2R 8419366 intergenic not near genes chr2R 8419418 intergenic not near genes chr2R 8419470 intergenic not near genes chr2R_6_8415001 chr2R_8415001 RAL-73 315 chr2R 8566046 8566064 chr2R 8567255 8567273 1360 4 1209 0.5 2.0 1.2 1.8 1227 chr2R 8566046 5` UTR Cyp6a14 - chr2R 8566660 5` UTR Cyp6a14 - chr2R 8567273 intergenic Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-73 316 chr2R 8567329 8567358 chr2R 8567603 8567629 5 273 2.5 1.0 1.8 1.8 300 chr2R 8567329 intergenic Cyp6a14 - chr2R 8567479 intergenic Cyp6a14 - chr2R 8567629 intergenic Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-73 317 chr2R 8658246 8658263 chr2R 8658310 8658339 7 72 2.0 2.0 2.0 2.3 93 chr2R 8658246 intron ptc + chr2R 8658292 intron ptc + chr2R 8658339 intron ptc + chr2R_7_8655001 chr2R_8655001 RAL-73 318 chr2R 8722763 8722793 chr2R 8723004 8723034 pogo 16 240 2.0 2.5 2.2 5.0 271 chr2R 8722763 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_16_8720001 chr2R_8720001 RAL-73 319 chr2R 8803391 8803422 chr2R 8803483 8803500 7 86 2.5 1.0 1.8 2.5 109 chr2R 8803391 intron sns + chr2R 8803446 intron sns + chr2R 8803500 intron sns + chr2R_7_8800001 chr2R_8800001 RAL-73 320 chr2R 8810732 8810769 chr2R 8810818 8810855 11 86 1.0 3.0 2.0 3.7 123 chr2R 8810732 intron sns + chr2R 8810794 intron sns + chr2R 8810855 intron sns + chr2R_11_8810001 chr2R_8810001 RAL-73 321 chr2R 9052720 9052739 chr2R 9052800 9052820 10 81 0.0 7.0 3.5 2.2 100 chr2R 9052720 intron CG13743 - chr2R 9052770 intron CG13743 - chr2R 9052820 intron CG13743 - chr2R_10_9050001 chr2R_9050001 RAL-73 322 chr2R 9075907 9075933 chr2R 9076042 9076068 12 135 3.5 2.5 3.0 3.0 161 chr2R 9075907 exon ana + chr2R 9075988 intron ana + chr2R 9076068 intron ana + chr2R_12_9075001 chr2R_9075001 RAL-73 323 chr2R 9129536 9129570 chr2R 9129623 9129651 11 86 2.0 3.5 2.8 2.9 115 chr2R 9129536 intron CG18659 - chr2R 9129594 intron CG18659 - chr2R 9129651 intron CG18659 - chr2R_11_9125001 chr2R_9125001 RAL-73 324 chr2R 9151316 9151328 chr2R 9157786 9157798 Burdock 5 6470 2.0 0.5 1.2 2.3 6482 chr2R 9151316 3` UTR CG30345 + chr2R 9154557 intergenic not near genes chr2R 9157798 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-73 325 chr2R 9212691 9212720 chr2R 9213177 9213206 roo 8 484 4.5 4.5 4.5 1.5 515 chr2R 9212691 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-73 326 chr2R 9218486 9218492 chr2R 9219027 9219055 4 554 4.0 4.0 4.0 0.8 569 chr2R 9218486 intergenic not near genes chr2R 9218770 intergenic not near genes chr2R 9219055 intergenic not near genes chr2R_4_9215001 chr2R_9215001 RAL-73 327 chr2R 9227869 9227901 chr2R 9227956 9227986 4 86 1.5 0.5 1.0 2.0 117 chr2R 9227869 3` UTR hig - chr2R 9227928 3` UTR hig - chr2R 9227986 3` UTR hig - chr2R_4_9225001 chr2R_9225001 RAL-73 328 chr2R 9256048 9256076 chr2R 9256131 9256159 8 83 6.0 4.0 5.0 1.3 111 chr2R 9256048 intron Pkn - chr2R 9256104 intron Pkn - chr2R 9256159 intron Pkn - chr2R_8_9255001 chr2R_9255001 RAL-73 329 chr2R 9378109 9378142 chr2R 9378191 9378224 11 82 3.0 4.0 3.5 2.4 115 chr2R 9378109 intron CG13954 - chr2R 9378166 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_11_9375001 chr2R_9375001 RAL-73 330 chr2R 9510668 9510691 chr2R 9510783 9510807 5 116 3.0 1.5 2.2 1.6 139 chr2R 9510668 intron brp + chr2R 9510738 intron brp + chr2R 9510807 intron brp + chr2R_5_9510001 chr2R_9510001 RAL-73 331 chr2R 9669135 9669164 chr2R 9669236 9669265 8 101 3.5 1.0 2.2 2.5 130 chr2R 9669135 intron Mmp2 - chr2R 9669200 intron Mmp2 - chr2R 9669265 intron Mmp2 - chr2R_8_9665001 chr2R_9665001 RAL-73 332 chr2R 9945436 9945465 chr2R 9945632 9945661 BS 7 193 4.0 2.0 3.0 1.8 225 chr2R 9945436 intron Mef2 - chr2R 9945548 intron Mef2 - chr2R 9945661 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-73 333 chr2R 9966962 9966969 chr2R 9967063 9967070 4 101 3.0 1.5 2.2 1.2 108 chr2R 9966962 intergenic CG12133 + chr2R 9967016 intergenic CG12133 + chr2R 9967070 intergenic CG12133 + chr2R_4_9965001 chr2R_9965001 RAL-73 334 chr2R 9975922 9975944 chr2R 9976034 9976058 10 114 4.0 0.5 2.2 3.1 136 chr2R 9975922 intergenic not near genes chr2R 9975990 intergenic not near genes chr2R 9976058 intergenic not near genes chr2R_10_9975001 chr2R_9975001 RAL-73 335 chr2R 10005850 10005883 chr2R 10007014 10007037 1360 11 1163 1.5 3.0 2.2 3.4 1187 chr2R 10005850 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007037 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-73 336 chr2R 10171119 10171142 chr2R 10171203 10171226 7 84 0.0 2.0 1.0 3.5 107 chr2R 10171119 intron KCNQ - chr2R 10171172 intron KCNQ - chr2R 10171226 intron KCNQ - chr2R_7_10170001 chr2R_10170001 RAL-73 337 chr2R 10176121 10176151 chr2R 10176200 10176230 16 79 2.0 4.0 3.0 4.0 109 chr2R 10176121 intron KCNQ - chr2R 10176176 intron KCNQ - chr2R 10176230 intron KCNQ - chr2R_16_10175001 chr2R_10175001 RAL-73 338 chr2R 10190460 10190470 chr2R 10190523 10190539 8 75 3.0 3.5 3.2 1.9 79 chr2R 10190460 intron KCNQ - chr2R 10190500 intron KCNQ - chr2R 10190539 intron KCNQ - chr2R_8_10190001 chr2R_10190001 RAL-73 339 chr2R 10216193 10216222 chr2R 10216271 10216300 8 78 1.0 2.5 1.8 2.9 107 chr2R 10216193 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216300 intron,intron CG12912 -,Hr46 - chr2R_8_10215001 chr2R_10215001 RAL-73 340 chr2R 10225736 10225748 chr2R 10225818 10225830 5 82 1.0 0.0 0.5 3.3 94 chr2R 10225736 intron,intron CG12912 -,Hr46 - chr2R 10225783 intron,intron CG12912 -,Hr46 - chr2R 10225830 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-73 341 chr2R 10318535 10318546 chr2R 10318621 10318632 5 86 1.0 1.0 1.0 2.5 97 chr2R 10318535 intron Ndg + chr2R 10318584 intron Ndg + chr2R 10318632 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-73 342 chr2R 10352680 10352704 chr2R 10352757 10352781 6 77 0.5 1.0 0.8 3.3 101 chr2R 10352680 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352730 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352781 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-73 343 chr2R 10429030 10429049 chr2R 10429107 10429126 4 76 0.0 0.0 0.0 4.0 96 chr2R 10429030 intergenic not near genes chr2R 10429078 intergenic not near genes chr2R 10429126 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-73 344 chr2R 10445122 10445150 chr2R 10445205 10445233 7 82 2.0 1.5 1.8 2.5 111 chr2R 10445122 intron Galphao + chr2R 10445178 intron Galphao + chr2R 10445233 intron Galphao + chr2R_7_10445001 chr2R_10445001 RAL-73 345 chr2R 10449075 10449096 chr2R 10449160 10449181 4 85 0.0 0.0 0.0 4.0 106 chr2R 10449075 intron Galphao + chr2R 10449128 intron Galphao + chr2R 10449181 intron Galphao + chr2R_4_10445001 chr2R_10445001 RAL-73 346 chr2R 10449198 10449224 chr2R 10449505 10449532 6 308 0.0 2.5 1.2 2.7 334 chr2R 10449198 intron Galphao + chr2R 10449365 intron,3` UTR Galphao +,Cyp49a1 - chr2R 10449532 intron,3` UTR Galphao +,Cyp49a1 - chr2R_6_10445001 chr2R_10445001 RAL-73 347 chr2R 10454102 10454124 chr2R 10454179 10454200 6 76 1.5 0.5 1.0 3.0 98 chr2R 10454102 intron,intron Galphao +,Cyp49a1 - chr2R 10454151 intron,intron Galphao +,Cyp49a1 - chr2R 10454200 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-73 348 chr2R 10469028 10469051 chr2R 10469154 10469177 11 126 4.0 5.0 4.5 2.0 149 chr2R 10469028 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469177 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-73 349 chr2R 10562186 10562210 chr2R 10562274 10562298 4 88 3.5 0.5 2.0 1.3 112 chr2R 10562186 exon psq + chr2R 10562242 intron psq + chr2R 10562298 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-73 350 chr2R 10572014 10572044 chr2R 10572206 10572236 8 190 1.5 1.5 1.5 3.2 222 chr2R 10572014 intron psq + chr2R 10572125 intron psq + chr2R 10572236 intron psq + chr2R_8_10570001 chr2R_10570001 RAL-73 351 chr2R 10585577 10585591 chr2R 10594158 10594174 Tirant 4 8582 0.0 4.0 2.0 1.3 8597 chr2R 10585577 intron psq + chr2R 10589876 intron psq + chr2R 10594174 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-73 352 chr2R 10653205 10653231 chr2R 10653284 10653310 6 79 1.0 1.0 1.0 3.0 105 chr2R 10653205 intergenic not near genes chr2R 10653258 intergenic not near genes chr2R 10653310 intergenic not near genes chr2R_6_10650001 chr2R_10650001 RAL-73 353 chr2R 10668069 10668080 chr2R 10668143 10668152 8 75 3.5 6.5 5.0 1.3 83 chr2R 10668069 intergenic not near genes chr2R 10668110 intergenic not near genes chr2R 10668152 intergenic not near genes chr2R_8_10665001 chr2R_10665001 RAL-73 354 chr2R 10671413 10671440 chr2R 10671545 10671573 6 133 3.0 3.5 3.2 1.4 160 chr2R 10671413 intergenic not near genes chr2R 10671493 intergenic not near genes chr2R 10671573 intergenic not near genes chr2R_6_10670001 chr2R_10670001 RAL-73 355 chr2R 10678487 10678522 chr2R 10678593 10678627 10 103 3.0 2.0 2.5 2.9 140 chr2R 10678487 intron stan + chr2R 10678557 intron stan + chr2R 10678627 intron stan + chr2R_10_10675001 chr2R_10675001 RAL-73 356 chr2R 10698568 10698590 chr2R 10698958 10698980 6 390 2.0 0.5 1.2 2.7 412 chr2R 10698568 intron stan + chr2R 10698774 intron stan + chr2R 10698980 intron stan + chr2R_6_10695001 chr2R_10695001 RAL-73 357 chr2R 10796008 10796040 chr2R 10796090 10796122 5 82 1.0 0.0 0.5 3.3 114 chr2R 10796008 intron CG33144 - chr2R 10796065 intron CG33144 - chr2R 10796122 intron CG33144 - chr2R_5_10795001 chr2R_10795001 RAL-73 358 chr2R 10871650 10871675 chr2R 10871729 10871756 7 80 0.0 1.0 0.5 4.7 106 chr2R 10871650 intron CG30015 - chr2R 10871703 intron CG30015 - chr2R 10871756 intron CG30015 - chr2R_7_10870001 chr2R_10870001 RAL-73 359 chr2R 10872763 10872794 chr2R 10872839 10872870 7 72 2.5 1.5 2.0 2.3 107 chr2R 10872763 intron CG30015 - chr2R 10872816 intron CG30015 - chr2R 10872870 intron CG30015 - chr2R_7_10870001 chr2R_10870001 RAL-73 360 chr2R 10948025 10948062 chr2R 10955575 10955613 17.6 12 7550 1.5 5.0 3.2 2.9 7588 chr2R 10948025 intergenic not near genes chr2R 10951819 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_12_10950001 chr2R_10950001 RAL-73 361 chr2R 11019878 11019889 chr2R 11024944 11024954 jockey 6 5066 4.0 5.0 4.5 1.1 5076 chr2R 11019878 intron luna - chr2R 11022416 intron luna - chr2R 11024954 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-73 362 chr2R 11019891 11019907 chr2R 11024941 11024941 jockey 5 5056 3.0 4.0 3.5 1.1 5050 chr2R 11019891 intron luna - chr2R 11022416 intron luna - chr2R 11024941 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-73 363 chr2R 11111158 11111176 chr2R 11111295 11111313 10 137 4.5 4.5 4.5 1.8 155 chr2R 11111158 intron luna - chr2R 11111236 intron luna - chr2R 11111313 intron luna - chr2R_10_11110001 chr2R_11110001 RAL-73 364 chr2R 11207813 11207847 chr2R 11208005 11208039 BS 7 192 1.0 0.5 0.8 3.9 226 chr2R 11207813 intron shn + chr2R 11207926 intron shn + chr2R 11208039 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-73 365 chr2R 11260518 11260548 chr2R 11260624 11260652 8 106 1.5 0.5 1.0 4.0 134 chr2R 11260518 intergenic not near genes chr2R 11260585 intergenic Cpr47Ed - chr2R 11260652 intergenic Cpr47Ed - chr2R_8_11260001 chr2R_11260001 RAL-73 366 chr2R 11472648 11472680 chr2R 11473845 11473877 pogo 8 1197 2.0 1.5 1.8 2.9 1229 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-73 367 chr2R 11717405 11717434 chr2R 11717487 11717516 8 82 2.5 4.0 3.2 1.9 111 chr2R 11717405 intron pyr + chr2R 11717460 intron pyr + chr2R 11717516 intron pyr + chr2R_8_11715001 chr2R_11715001 RAL-73 368 chr2R 11822990 11822999 chr2R 11823067 11823076 4 77 1.5 3.0 2.2 1.2 86 chr2R 11822990 intergenic not near genes chr2R 11823033 intergenic not near genes chr2R 11823076 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-73 369 chr2R 8518772 8518787 chr2R 12066166 12066181 5 3547394 5.5 17.5 11.5 0.4 3547409 chr2R 8518772 intron mtt - chr2R 10292476 intron CAP + chr2R 12066181 intron CG8888 - chr2R_5_10290001 chr2R_10290001 RAL-73 370 chr2R 8518771 8518795 chr2R 12066186 12066195 7 3547399 5.0 13.0 9.0 0.7 3547424 chr2R 8518771 intron mtt - chr2R 10292483 intron CAP + chr2R 12066195 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-73 371 chr2R 12096835 12096849 chr2R 12097287 12097301 5 452 5.0 4.0 4.5 0.9 466 chr2R 12096835 intron jeb - chr2R 12097068 intron jeb - chr2R 12097301 intron jeb - chr2R_5_12095001 chr2R_12095001 RAL-73 372 chr2R 12120407 12120437 chr2R 12120486 12120519 15 80 3.0 3.0 3.0 3.8 112 chr2R 12120407 intergenic not near genes chr2R 12120463 intergenic not near genes chr2R 12120519 intergenic not near genes chr2R_15_12120001 chr2R_12120001 RAL-73 373 chr2R 12124829 12124860 chr2R 12124913 12124944 4 84 0.5 1.0 0.8 2.2 115 chr2R 12124829 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124944 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-73 374 chr2R 12187471 12187508 chr2R 12190087 12190124 92 2619 199.0 120.0 159.5 0.6 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_92_12185001 chr2R_12185001 RAL-73 375 chr2R 12363383 12363410 chr2R 12363815 12363842 7 431 1.5 2.0 1.8 2.5 459 chr2R 12363383 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363842 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-73 376 chr2R 12417465 12417484 chr2R 12417544 12417558 11 79 5.0 5.5 5.2 1.8 93 chr2R 12417465 exon CG13157 + chr2R 12417512 exon CG13157 + chr2R 12417558 exon CG13157 + chr2R_11_12415001 chr2R_12415001 RAL-73 377 chr2R 12481139 12481170 chr2R 12482942 12482974 roo 11 1799 3.0 3.0 3.0 2.8 1835 chr2R 12481139 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482974 intron Dh44-R2 + chr2R_11_12480001 chr2R_12480001 RAL-73 378 chr2R 12501713 12501727 chr2R 12503850 12503889 Rt1c 6 2153 1.0 3.0 2.0 2.0 2176 chr2R 12501713 intron fdl - chr2R 12502801 intron fdl - chr2R 12503889 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-73 379 chr2R 12596826 12596854 chr2R 12597003 12597019 4 174 1.0 1.0 1.0 2.0 193 chr2R 12596826 intron Amph + chr2R 12596922 intron Amph + chr2R 12597019 intron Amph + chr2R_4_12595001 chr2R_12595001 RAL-73 380 chr2R 12670212 12670231 chr2R 12670291 12670310 5 79 4.5 0.0 2.2 1.6 98 chr2R 12670212 5` UTR nemy - chr2R 12670261 intergenic nemy -,CG42708 - chr2R 12670310 intergenic nemy -,CG42708 - chr2R_5_12670001 chr2R_12670001 RAL-73 381 chr2R 12733038 12733048 chr2R 12733116 12733126 5 78 0.5 0.5 0.5 3.3 88 chr2R 12733038 intron CG42663 + chr2R 12733082 intron CG42663 + chr2R 12733126 intron CG42663 + chr2R_5_12730001 chr2R_12730001 RAL-73 382 chr2R 12771325 12771356 chr2R 12771434 12771465 5 109 0.5 2.0 1.2 2.3 140 chr2R 12771325 intergenic not near genes chr2R 12771395 intergenic not near genes chr2R 12771465 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-73 383 chr2R 12789297 12789321 chr2R 12797660 12797684 roo 4 8363 1.5 3.5 2.5 1.1 8387 chr2R 12789297 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797684 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-73 384 chr2R 12819451 12819478 chr2R 12824520 12824547 jockey 9 5068 1.5 2.0 1.8 3.2 5096 chr2R 12819451 intergenic not near genes chr2R 12821999 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_9_12820001 chr2R_12820001 RAL-73 385 chr2R 13048078 13048103 chr2R 13048160 13048184 5 82 3.5 7.0 5.2 0.8 106 chr2R 13048078 intergenic not near genes chr2R 13048131 intergenic not near genes chr2R 13048184 intergenic not near genes chr2R_5_13045001 chr2R_13045001 RAL-73 386 chr2R 13089755 13089782 chr2R 13089865 13089892 9 110 3.0 3.0 3.0 2.2 137 chr2R 13089755 intergenic not near genes chr2R 13089824 intergenic not near genes chr2R 13089892 intergenic not near genes chr2R_9_13085001 chr2R_13085001 RAL-73 387 chr2R 13106398 13106428 chr2R 13106495 13106525 5 93 4.5 2.0 3.2 1.2 127 chr2R 13106398 intergenic not near genes chr2R 13106462 intergenic not near genes chr2R 13106525 intergenic not near genes chr2R_5_13105001 chr2R_13105001 RAL-73 388 chr2R 13136838 13136859 chr2R 13141636 13141656 Doc 10 4798 4.5 5.5 5.0 1.7 4818 chr2R 13136838 exon Cap-G + chr2R 13139247 intron Cap-G + chr2R 13141656 intron Cap-G + chr2R_10_13135001 chr2R_13135001 RAL-73 389 chr2R 13249575 13249598 chr2R 13249664 13249687 4 89 0.0 1.0 0.5 2.7 112 chr2R 13249575 intron CG4712 - chr2R 13249631 intron CG4712 - chr2R 13249687 intron CG4712 - chr2R_4_13245001 chr2R_13245001 RAL-73 390 chr2R 13257276 13257291 chr2R 13257356 13257371 5 80 4.5 2.0 3.2 1.2 95 chr2R 13257276 exon CG4716 + chr2R 13257324 exon CG4716 + chr2R 13257371 3` UTR CG4716 + chr2R_5_13255001 chr2R_13255001 RAL-73 391 chr2R 13431490 13431516 chr2R 13431569 13431595 4 79 1.5 1.5 1.5 1.6 105 chr2R 13431490 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431595 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-73 392 chr2R 13438863 13438893 chr2R 13440181 13440211 8 1318 3.5 31.0 17.2 0.4 1348 chr2R 13438863 5` UTR CG42321 - chr2R 13439537 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_8_13435001 chr2R_13435001 RAL-73 393 chr2R 13464476 13464500 chr2R 13464606 13464631 7 131 4.5 2.0 3.2 1.7 155 chr2R 13464476 intron arr - chr2R 13464554 intron arr - chr2R 13464631 intron arr - chr2R_7_13460001 chr2R_13460001 RAL-73 394 chr2R 13547089 13547097 chr2R 13547284 13547292 5 195 1.0 0.5 0.8 2.8 203 chr2R 13547089 intron CG6145 - chr2R 13547190 intron CG6145 - chr2R 13547292 intron CG6145 - chr2R_5_13545001 chr2R_13545001 RAL-73 395 chr2R 13566260 13566289 chr2R 13566340 13566369 6 80 0.0 0.5 0.2 5.0 109 chr2R 13566260 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566369 intergenic not near genes chr2R_6_13565001 chr2R_13565001 RAL-73 396 chr2R 13577431 13577465 chr2R 13577508 13577542 11 77 1.5 2.0 1.8 3.9 111 chr2R 13577431 5` UTR CR44365 + chr2R 13577486 5` UTR CR44365 + chr2R 13577542 5` UTR CR44365 + chr2R_11_13575001 chr2R_13575001 RAL-73 397 chr2R 13635689 13635713 chr2R 13635788 13635811 8 98 0.0 0.5 0.2 6.7 122 chr2R 13635689 intron fas + chr2R 13635750 intron fas + chr2R 13635811 intron fas + chr2R_8_13635001 chr2R_13635001 RAL-73 398 chr2R 13658093 13658112 chr2R 13658164 13658192 8 78 4.5 2.0 3.2 1.9 99 chr2R 13658093 intron fas + chr2R 13658142 intron fas + chr2R 13658192 intron fas + chr2R_8_13655001 chr2R_13655001 RAL-73 399 chr2R 13663609 13663638 chr2R 13663687 13663716 8 78 3.0 3.0 3.0 2.0 107 chr2R 13663609 intron fas + chr2R 13663662 intron fas + chr2R 13663716 intron fas + chr2R_8_13660001 chr2R_13660001 RAL-73 400 chr2R 13768990 13769007 chr2R 13769088 13769106 6 97 3.0 6.5 4.8 1.0 116 chr2R 13768990 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769106 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-73 401 chr2R 13790328 13790335 chr2R 13790404 13790411 4 76 3.0 0.0 1.5 1.6 83 chr2R 13790328 intergenic not near genes chr2R 13790370 intergenic not near genes chr2R 13790411 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-73 402 chr2R 14324688 14324707 chr2R 14324918 14324937 6 230 1.0 1.0 1.0 3.0 249 chr2R 14324688 intron Shroom + chr2R 14324812 intron Shroom + chr2R 14324937 intron Shroom + chr2R_6_14320001 chr2R_14320001 RAL-73 403 chr2R 14342431 14342465 chr2R 14342587 14342622 10 157 3.0 2.5 2.8 2.6 191 chr2R 14342431 intron Shroom + chr2R 14342526 intron Shroom + chr2R 14342622 intron Shroom + chr2R_10_14340001 chr2R_14340001 RAL-73 404 chr2R 14386803 14386821 chr2R 14386951 14386961 5 144 3.0 5.0 4.0 1.0 158 chr2R 14386803 intergenic not near genes chr2R 14386882 intergenic not near genes chr2R 14386961 intergenic not near genes chr2R_5_14385001 chr2R_14385001 RAL-73 405 chr2R 14467291 14467324 chr2R 14476443 14476476 roo 12 9151 2.5 2.5 2.5 3.4 9185 chr2R 14467291 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-73 406 chr2R 14566445 14566475 chr2R 14566532 14566562 8 87 1.5 3.0 2.2 2.5 117 chr2R 14566445 intron ttv + chr2R 14566504 intron ttv + chr2R 14566562 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-73 407 chr2R 14816105 14816125 chr2R 14816201 14816215 4 93 7.5 5.0 6.2 0.6 110 chr2R 14816105 intergenic not near genes chr2R 14816160 intergenic not near genes chr2R 14816215 intergenic not near genes chr2R_4_14815001 chr2R_14815001 RAL-73 408 chr2R 14850055 14850088 chr2R 14850161 14850194 8 106 21.0 17.5 19.2 0.4 139 chr2R 14850055 exon SMC2 - chr2R 14850124 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_8_14850001 chr2R_14850001 RAL-73 409 chr2R 14911707 14911723 chr2R 14911830 14911846 4 123 1.0 2.0 1.5 1.6 139 chr2R 14911707 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911846 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-73 410 chr2R 14922142 14922173 chr2R 14922218 14922249 6 76 2.5 1.5 2.0 2.0 107 chr2R 14922142 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922249 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-73 411 chr2R 14985455 14985481 chr2R 14985531 14985557 15 75 2.0 5.5 3.8 3.1 102 chr2R 14985455 intron pcs + chr2R 14985506 intron pcs + chr2R 14985557 intron pcs + chr2R_15_14985001 chr2R_14985001 RAL-73 412 chr2R 15015454 15015488 chr2R 15022878 15022912 mdg1 8 7423 1.5 2.0 1.8 2.9 7458 chr2R 15015454 intron hbs + chr2R 15019183 intron hbs + chr2R 15022912 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-73 413 chr2R 15027488 15027518 chr2R 15027576 15027606 12 85 3.0 3.5 3.2 2.9 118 chr2R 15027488 intron hbs + chr2R 15027547 intron hbs + chr2R 15027606 intron hbs + chr2R_12_15025001 chr2R_15025001 RAL-73 414 chr2R 15074816 15074827 chr2R 15075059 15075088 7 257 4.0 2.0 3.0 1.8 272 chr2R 15074816 intergenic not near genes chr2R 15074952 intergenic not near genes chr2R 15075088 intergenic not near genes chr2R_7_15070001 chr2R_15070001 RAL-73 415 chr2R 15084982 15084999 chr2R 15092031 15092048 297 4 7049 3.5 0.5 2.0 1.3 7066 chr2R 15084982 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092048 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-73 416 chr2R 15119317 15119351 chr2R 15127797 15127822 Tirant 7 8479 5.0 3.0 4.0 1.4 8505 chr2R 15119317 intron chn + chr2R 15123570 intron chn + chr2R 15127822 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-73 417 chr2R 15134299 15134316 chr2R 15134376 15134392 7 77 0.0 4.0 2.0 2.3 93 chr2R 15134299 intron chn + chr2R 15134346 intron chn + chr2R 15134392 intron chn + chr2R_7_15130001 chr2R_15130001 RAL-73 418 chr2R 15137969 15137998 chr2R 15138049 15138080 4 80 0.5 0.0 0.2 3.3 111 chr2R 15137969 intron chn + chr2R 15138024 intron chn + chr2R 15138080 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-73 419 chr2R 15294678 15294709 chr2R 15294760 15294791 7 79 2.5 5.0 3.8 1.5 113 chr2R 15294678 intron,3` UTR Trpm -,CR44241 - chr2R 15294734 intron,3` UTR Trpm -,CR44241 - chr2R 15294791 intron,3` UTR Trpm -,CR44241 - chr2R_7_15290001 chr2R_15290001 RAL-73 420 chr2R 15340307 15340324 chr2R 15340383 15340400 6 77 0.0 4.5 2.2 1.9 93 chr2R 15340307 intergenic unc-5 + chr2R 15340354 intergenic unc-5 + chr2R 15340400 intergenic unc-5 + chr2R_6_15340001 chr2R_15340001 RAL-73 421 chr2R 15697899 15697918 chr2R 15697980 15697999 4 81 0.5 0.0 0.2 3.3 100 chr2R 15697899 exon CG33462 + chr2R 15697949 3` UTR CG33462 + chr2R 15697999 3` UTR CG33462 + chr2R_4_15695001 chr2R_15695001 RAL-73 422 chr2R 15749294 15749311 chr2R 15749376 15749395 5 83 5.5 4.5 5.0 0.8 101 chr2R 15749294 intron CG30089 + chr2R 15749344 intron CG30089 + chr2R 15749395 intron CG30089 + chr2R_5_15745001 chr2R_15745001 RAL-73 423 chr2R 15829528 15829535 chr2R 15829660 15829667 4 132 2.5 10.5 6.5 0.5 139 chr2R 15829528 intron,intron tun +,Poxn - chr2R 15829598 intron,intron tun +,Poxn - chr2R 15829667 intron,intron tun +,Poxn - chr2R_4_15825001 chr2R_15825001 RAL-73 424 chr2R 16442895 16442909 chr2R 16442975 16442990 4 81 1.5 1.5 1.5 1.6 95 chr2R 16442895 intergenic CG4409 + chr2R 16442942 intergenic CG4409 + chr2R 16442990 intergenic CG4409 + chr2R_4_16440001 chr2R_16440001 RAL-73 425 chr2R 16503877 16503899 chr2R 16503967 16503989 7 90 0.5 3.0 1.8 2.5 112 chr2R 16503877 intron Sema-2a + chr2R 16503933 intron Sema-2a + chr2R 16503989 intron Sema-2a + chr2R_7_16500001 chr2R_16500001 RAL-73 426 chr2R 16511803 16511832 chr2R 16511965 16511993 8 162 3.0 0.0 1.5 3.2 190 chr2R 16511803 intron Sema-2a + chr2R 16511898 intron Sema-2a + chr2R 16511993 intron Sema-2a + chr2R_8_16510001 chr2R_16510001 RAL-73 427 chr2R 16554115 16554134 chr2R 16554467 16554486 5 352 1.5 1.0 1.2 2.3 371 chr2R 16554115 intron Syn2 + chr2R 16554300 intron Syn2 + chr2R 16554486 intron Syn2 + chr2R_5_16550001 chr2R_16550001 RAL-73 428 chr2R 16689153 16689174 chr2R 16689482 16689503 5 329 3.0 2.5 2.8 1.3 350 chr2R 16689153 intron CG30463 - chr2R 16689328 intron CG30463 - chr2R 16689503 intron CG30463 - chr2R_5_16685001 chr2R_16685001 RAL-73 429 chr2R 16893779 16893800 chr2R 16893862 16893883 6 82 1.5 1.0 1.2 2.7 104 chr2R 16893779 intron CG8910 - chr2R 16893831 intron CG8910 - chr2R 16893883 intron CG8910 - chr2R_6_16890001 chr2R_16890001 RAL-73 430 chr2R 17236508 17236542 chr2R 17241712 17241743 copia 9 5204 1.5 3.0 2.2 2.8 5235 chr2R 17236508 intron mbl + chr2R 17239126 intron mbl + chr2R 17241743 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-73 431 chr2R 17299755 17299786 chr2R 17299960 17299977 4 198 3.5 3.0 3.2 1.0 222 chr2R 17299755 intron mbl + chr2R 17299866 intron mbl + chr2R 17299977 intron mbl + chr2R_4_17295001 chr2R_17295001 RAL-73 432 chr2R 17335368 17335399 chr2R 17335471 17335502 5 104 0.0 2.0 1.0 2.5 134 chr2R 17335368 intron mbl + chr2R 17335435 intron mbl + chr2R 17335502 intron mbl + chr2R_5_17335001 chr2R_17335001 RAL-73 433 chr2R 17459013 17459037 chr2R 17459098 17459122 6 85 2.0 0.5 1.2 2.7 109 chr2R 17459013 intron CG14478 + chr2R 17459068 intron CG14478 + chr2R 17459122 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-73 434 chr2R 17497001 17497016 chr2R 17497825 17497840 4 824 0.5 3.5 2.0 1.3 839 chr2R 17497001 intergenic not near genes chr2R 17497420 intergenic not near genes chr2R 17497840 intergenic not near genes chr2R_4_17495001 chr2R_17495001 RAL-73 435 chr2R 17537697 17537735 chr2R 17540765 17540803 15 3068 42.5 49.5 46.0 0.3 3106 chr2R 17537697 exon eIF3-S9 + chr2R 17539250 intergenic CG43370 +,eIF3-S9 + chr2R 17540803 exon CG43370 + chr2R_15_17535001 chr2R_17535001 RAL-73 436 chr2R 17655201 17655230 chr2R 17655278 17655304 16 75 2.0 4.0 3.0 4.0 103 chr2R 17655201 intron CCHa1-R - chr2R 17655252 intron CCHa1-R - chr2R 17655304 intron CCHa1-R - chr2R_16_17655001 chr2R_17655001 RAL-73 437 chr2R 17784026 17784052 chr2R 17784265 17784292 pogo 4 240 0.0 4.0 2.0 1.3 266 chr2R 17784026 intergenic mir-31a - chr2R 17784159 intergenic mir-31a - chr2R 17784292 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-73 438 chr2R 17982923 17982943 chr2R 17983008 17983028 4 85 1.0 2.5 1.8 1.4 105 chr2R 17982923 intron dpr13 - chr2R 17982976 intron dpr13 - chr2R 17983028 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-73 439 chr2R 18021487 18021556 chr2R 18022034 18022046 9 501 6.5 17.0 11.8 0.7 559 chr2R 18021487 exon CG10910 + chr2R 18021766 exon CG10910 + chr2R 18022046 exon CG10910 + chr2R_9_18020001 chr2R_18020001 RAL-73 440 chr2R 18358400 18358422 chr2R 18372612 18372634 roo 4 14212 1.0 1.5 1.2 1.8 14234 chr2R 18358400 intergenic not near genes chr2R 18365517 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-73 441 chr2R 18393707 18393722 chr2R 18394287 18394302 6 580 4.0 6.5 5.2 1.0 595 chr2R 18393707 5` UTR Idgf5 + chr2R 18394004 exon Idgf5 + chr2R 18394302 exon Idgf5 + chr2R_6_18390001 chr2R_18390001 RAL-73 442 chr2R 18435805 18435834 chr2R 18435889 18435918 4 84 1.5 0.0 0.8 2.2 113 chr2R 18435805 intron CG30118 - chr2R 18435862 intron CG30118 - chr2R 18435918 intron CG30118 - chr2R_4_18435001 chr2R_18435001 RAL-73 443 chr2R 18486847 18486875 chr2R 18487106 18487137 7 262 3.5 2.0 2.8 1.8 290 chr2R 18486847 intron CG30116 - chr2R 18486992 intron CG30116 - chr2R 18487137 intron CG30116 - chr2R_7_18485001 chr2R_18485001 RAL-73 444 chr2R 18528195 18528222 chr2R 18528279 18528307 7 85 0.5 2.5 1.5 2.8 112 chr2R 18528195 intron CG10924 + chr2R 18528251 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-73 445 chr2R 18575797 18575831 chr2R 18581985 18582019 3S18 4 6188 2.0 2.5 2.2 1.2 6222 chr2R 18575797 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-73 446 chr2R 18590870 18590897 chr2R 18600022 18600048 roo 10 9152 4.0 2.5 3.2 2.4 9178 chr2R 18590870 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600048 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-73 447 chr2R 18692911 18692921 chr2R 18692996 18693008 4 86 2.5 0.5 1.5 1.6 97 chr2R 18692911 intron Sik3 + chr2R 18692960 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-73 448 chr2R 19012938 19012964 chr2R 19013031 19013056 12 93 2.0 1.0 1.5 4.8 118 chr2R 19012938 intergenic not near genes chr2R 19012997 intergenic not near genes chr2R 19013056 intergenic not near genes chr2R_12_19010001 chr2R_19010001 RAL-73 449 chr2R 19026051 19026057 chr2R 19026191 19026197 5 140 3.5 0.5 2.0 1.7 146 chr2R 19026051 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026197 intron 5-HT1B - chr2R_5_19025001 chr2R_19025001 RAL-73 450 chr2R 19076377 19076409 chr2R 19076485 19076517 15 106 1.0 5.5 3.2 3.6 140 chr2R 19076377 intron 5-HT1A + chr2R 19076447 intron 5-HT1A + chr2R 19076517 intron 5-HT1A + chr2R_15_19075001 chr2R_19075001 RAL-73 451 chr2R 19246023 19246054 chr2R 19246207 19246238 13 184 1.5 1.5 1.5 5.2 215 chr2R 19246023 intergenic not near genes chr2R 19246130 intergenic not near genes chr2R 19246238 intergenic not near genes chr2R_13_19245001 chr2R_19245001 RAL-73 452 chr2R 19300960 19300993 chr2R 19301043 19301074 7 83 2.0 1.0 1.5 2.8 114 chr2R 19300960 intron Tab2 + chr2R 19301017 intron Tab2 + chr2R 19301074 intron Tab2 + chr2R_7_19300001 chr2R_19300001 RAL-73 453 chr2R 19536473 19536496 chr2R 19536555 19536578 6 81 1.0 3.5 2.2 1.9 105 chr2R 19536473 intron sm - chr2R 19536526 intron sm - chr2R 19536578 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-73 454 chr2R 19714706 19714722 chr2R 19714782 19714798 5 76 0.0 0.0 0.0 5.0 92 chr2R 19714706 3` UTR CG8517 + chr2R 19714752 3` UTR CG8517 + chr2R 19714798 3` UTR CG8517 + chr2R_5_19710001 chr2R_19710001 RAL-73 455 chr2R 19776594 19776625 chr2R 19779916 19779948 jockey 4 3323 1.5 0.5 1.0 2.0 3354 chr2R 19776594 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779948 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-73 456 chr2R 19957440 19957464 chr2R 19962640 19962664 copia 11 5202 2.0 4.5 3.2 2.6 5224 chr2R 19957440 intergenic CG44623 + chr2R 19960052 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_11_19960001 chr2R_19960001 RAL-73 457 chr2R 20057027 20057040 chr2R 20057105 20057125 4 84 3.0 6.0 4.5 0.7 98 chr2R 20057027 intergenic not near genes chr2R 20057076 intergenic not near genes chr2R 20057125 intergenic not near genes chr2R_4_20055001 chr2R_20055001 RAL-73 458 chr2R 20069242 20069273 chr2R 20071872 20071903 opus 5 2630 2.0 0.5 1.2 2.3 2661 chr2R 20069242 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071903 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-73 459 chr2R 20119520 20119532 chr2R 20119601 20119613 4 80 4.5 4.5 4.5 0.7 93 chr2R 20119520 intergenic not near genes chr2R 20119566 intergenic not near genes chr2R 20119613 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-73 460 chr2R 20162681 20162712 chr2R 20162798 20162829 13 117 5.5 3.5 4.5 2.4 148 chr2R 20162681 intergenic not near genes chr2R 20162755 intergenic not near genes chr2R 20162829 intergenic not near genes chr2R_13_20160001 chr2R_20160001 RAL-73 461 chr2R 20223949 20223975 chr2R 20224034 20224060 4 85 1.0 0.0 0.5 2.7 111 chr2R 20223949 intergenic not near genes chr2R 20224004 intergenic not near genes chr2R 20224060 intergenic not near genes chr2R_4_20220001 chr2R_20220001 RAL-73 462 chr2R 20320740 20320774 chr2R 20320823 20320856 16 83 3.0 2.5 2.8 4.2 116 chr2R 20320740 intron CG8920 + chr2R 20320798 intron CG8920 + chr2R 20320856 intron CG8920 + chr2R_16_20320001 chr2R_20320001 RAL-73 463 chr2R 20515224 20515251 chr2R 20515300 20515312 9 70 4.5 1.5 3.0 2.2 88 chr2R 20515224 intergenic not near genes chr2R 20515268 intergenic not near genes chr2R 20515312 intergenic not near genes chr2R_9_20515001 chr2R_20515001 RAL-73 464 chr2R 20572572 20572587 chr2R 20572662 20572677 4 90 0.5 2.0 1.2 1.8 105 chr2R 20572572 intron qsm - chr2R 20572624 intron qsm - chr2R 20572677 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-73 465 chr2R 20601728 20601755 chr2R 20601813 20601840 7 85 0.0 1.5 0.8 3.9 112 chr2R 20601728 intron bl + chr2R 20601784 intron bl + chr2R 20601840 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-73 466 chr2R 20604196 20604208 chr2R 20604280 20604291 4 84 8.5 3.5 6.0 0.6 95 chr2R 20604196 intron bl + chr2R 20604244 intron bl + chr2R 20604291 intron bl + chr2R_4_20600001 chr2R_20600001 RAL-73 467 chr2R 20739460 20739479 chr2R 20744228 20744247 F-element 7 4768 1.5 6.5 4.0 1.4 4787 chr2R 20739460 intron dpr + chr2R 20741854 intron dpr + chr2R 20744247 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-73 468 chr2R 20783312 20783333 chr2R 20788084 20788105 F-element 4 4772 0.5 2.5 1.5 1.6 4793 chr2R 20783312 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-73 469 chr2R 20861556 20861562 chr2R 20861841 20861847 4 285 0.0 2.5 1.2 1.8 291 chr2R 20861556 intergenic not near genes chr2R 20861702 intergenic not near genes chr2R 20861847 intergenic not near genes chr2R_4_20860001 chr2R_20860001 RAL-73 470 chr2R 20962906 20962938 chr2R 20963004 20963036 7 98 0.0 2.0 1.0 3.5 130 chr2R 20962906 intergenic not near genes chr2R 20962971 intergenic not near genes chr2R 20963036 intergenic not near genes chr2R_7_20960001 chr2R_20960001 RAL-73 471 chr2R 20967025 20967055 chr2R 20967102 20967132 8 77 2.0 0.0 1.0 4.0 107 chr2R 20967025 intergenic not near genes chr2R 20967078 intergenic not near genes chr2R 20967132 intergenic not near genes chr2R_8_20965001 chr2R_20965001 RAL-73 472 chr2R 21075682 21075709 chr2R 21075769 21075796 10 86 2.5 1.5 2.0 3.3 114 chr2R 21075682 intron Treh + chr2R 21075739 intron Treh + chr2R 21075796 intron Treh + chr2R_10_21075001 chr2R_21075001 RAL-73 473 chr2R 21344446 21344464 chr2R 21344532 21344550 10 85 3.5 3.5 3.5 2.2 104 chr2R 21344446 exon CG15666 + chr2R 21344498 intron CG15666 + chr2R 21344550 intron CG15666 + chr2R_10_21340001 chr2R_21340001 RAL-73 474 chr2R 21370521 21370529 chr2R 21370628 21370636 4 107 2.0 0.5 1.2 1.8 115 chr2R 21370521 intron cv-2 - chr2R 21370578 intron cv-2 - chr2R 21370636 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-73 475 chr2R 21373406 21373418 chr2R 21373724 21373732 5 317 3.5 2.5 3.0 1.2 326 chr2R 21373406 intron cv-2 - chr2R 21373569 intron cv-2 - chr2R 21373732 intron cv-2 - chr2R_5_21370001 chr2R_21370001 RAL-73 476 chr2R 21421340 21421348 chr2R 21421419 21421427 4 78 1.5 2.5 2.0 1.3 87 chr2R 21421340 intron Sdc - chr2R 21421384 intron Sdc - chr2R 21421427 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-73 477 chr2R 21592843 21592857 chr2R 21592926 21592939 4 83 7.0 6.5 6.8 0.5 96 chr2R 21592843 intergenic not near genes chr2R 21592891 intergenic not near genes chr2R 21592939 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-73 478 chr2R 21738276 21738285 chr2R 21747436 21747445 roo 6 9159 7.5 3.5 5.5 0.9 9169 chr2R 21738276 intergenic not near genes chr2R 21742860 intergenic not near genes chr2R 21747445 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-73 479 chr2R 21753088 21753117 chr2R 21753573 21753602 roo 7 485 1.5 1.0 1.2 3.2 514 chr2R 21753088 intergenic not near genes chr2R 21753345 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-73 480 chr2R 21840905 21840929 chr2R 21840987 21841011 11 80 5.5 2.5 4.0 2.2 106 chr2R 21840905 intergenic not near genes chr2R 21840958 intergenic not near genes chr2R 21841011 intergenic not near genes chr2R_11_21840001 chr2R_21840001 RAL-73 481 chr2R 21840934 21840935 chr2R 21840985 21840998 5 62 4.5 2.5 3.5 1.1 64 chr2R 21840934 intergenic not near genes chr2R 21840966 intergenic not near genes chr2R 21840998 intergenic not near genes chr2R_5_21840001 chr2R_21840001 RAL-73 482 chr2R 21857351 21857371 chr2R 21857442 21857462 4 91 2.0 3.0 2.5 1.1 111 chr2R 21857351 intergenic not near genes chr2R 21857406 intergenic not near genes chr2R 21857462 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-73 483 chr2R 21906270 21906303 chr2R 21906371 21906404 4 101 1.0 1.0 1.0 2.0 134 chr2R 21906270 intron Fili + chr2R 21906337 intron Fili + chr2R 21906404 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-73 484 chr2R 21935647 21935672 chr2R 21935726 21935751 14 79 0.5 3.0 1.8 5.0 104 chr2R 21935647 intron,intron Fili +,CG43742 - chr2R 21935699 intron,exon Fili +,CG43742 - chr2R 21935751 intron,intron Fili +,CG43742 - chr2R_14_21935001 chr2R_21935001 RAL-73 485 chr2R 21967381 21967407 chr2R 21967458 21967484 12 77 3.0 3.5 3.2 2.9 103 chr2R 21967381 intron ppk9 + chr2R 21967432 intron ppk9 + chr2R 21967484 intron ppk9 + chr2R_12_21965001 chr2R_21965001 RAL-73 486 chr2R 22003089 22003122 chr2R 22003175 22003208 9 86 3.0 0.5 1.8 3.2 119 chr2R 22003089 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003208 intron CG34370 - chr2R_9_22000001 chr2R_22000001 RAL-73 487 chr2R 22110813 22110838 chr2R 22110908 22110932 6 95 2.5 2.0 2.2 1.9 119 chr2R 22110813 exon Vrp1 - chr2R 22110872 exon Vrp1 - chr2R 22110932 exon Vrp1 - chr2R_6_22110001 chr2R_22110001 RAL-73 488 chr2R 22117954 22117977 chr2R 22118321 22118344 7 367 2.0 3.0 2.5 2.0 390 chr2R 22117954 intron Vrp1 - chr2R 22118149 intron Vrp1 - chr2R 22118344 intron Vrp1 - chr2R_7_22115001 chr2R_22115001 RAL-73 489 chr2R 22154385 22154399 chr2R 22154475 22154489 6 90 7.5 9.0 8.2 0.7 104 chr2R 22154385 intron a + chr2R 22154437 intron a + chr2R 22154489 intron a + chr2R_6_22150001 chr2R_22150001 RAL-73 490 chr2R 22185683 22185699 chr2R 22185782 22185798 7 99 1.0 0.5 0.8 3.9 115 chr2R 22185683 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185798 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-73 491 chr2R 22292070 22292106 chr2R 22292157 22292193 13 87 3.5 3.0 3.2 3.1 123 chr2R 22292070 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292193 5` UTR CR43422 + chr2R_13_22290001 chr2R_22290001 RAL-73 492 chr2R 22292765 22292790 chr2R 22292841 22292870 12 79 4.5 4.0 4.2 2.3 105 chr2R 22292765 intergenic CR43422 + chr2R 22292818 intergenic CR43422 + chr2R 22292870 intergenic CR43422 + chr2R_12_22290001 chr2R_22290001 RAL-73 493 chr2R 22349695 22349722 chr2R 22351479 22351505 jockey 8 1784 2.5 3.0 2.8 2.1 1810 chr2R 22349695 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-73 494 chr2R 22360383 22360393 chr2R 22360816 22360826 jockey 7 432 2.0 1.5 1.8 2.5 443 chr2R 22360383 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360826 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-73 495 chr2R 22431993 22432015 chr2R 22432130 22432149 9 131 5.0 5.5 5.2 1.5 156 chr2R 22431993 intergenic not near genes chr2R 22432071 intergenic not near genes chr2R 22432149 intergenic not near genes chr2R_9_22430001 chr2R_22430001 RAL-73 496 chr2R 22525758 22525773 chr2R 22529317 22529332 jockey 4 3558 1.5 1.5 1.5 1.6 3574 chr2R 22525758 intron px - chr2R 22527545 intron px - chr2R 22529332 intron px - chr2R_4_22525001 chr2R_22525001 RAL-73 497 chr2R 22574309 22574322 chr2R 22574415 22574424 4 105 3.0 1.5 2.2 1.2 115 chr2R 22574309 intron dnr1 - chr2R 22574366 intron dnr1 - chr2R 22574424 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-73 498 chr2R 22574323 22574331 chr2R 22574414 22574437 4 101 2.5 1.5 2.0 1.3 114 chr2R 22574323 intron dnr1 - chr2R 22574380 intron dnr1 - chr2R 22574437 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-73 499 chr2R 22675094 22675120 chr2R 22675260 22675280 4 164 3.0 1.5 2.2 1.2 186 chr2R 22675094 intergenic not near genes chr2R 22675187 intergenic not near genes chr2R 22675280 intergenic not near genes chr2R_4_22675001 chr2R_22675001 RAL-73 500 chr2R 22729461 22729468 chr2R 22729669 22729676 INE-1 6 208 4.0 3.0 3.5 1.3 215 chr2R 22729461 intron jbug - chr2R 22729568 intron jbug - chr2R 22729676 intron jbug - chr2R_6_22725001 chr2R_22725001 RAL-73 501 chr2R 22756560 22756584 chr2R 22756637 22756661 11 77 3.0 2.5 2.8 2.9 101 chr2R 22756560 intron,intron CG42260 -,CR30267 + chr2R 22756610 intron,intron CG42260 -,CR30267 + chr2R 22756661 intron,intron CG42260 -,CR30267 + chr2R_11_22755001 chr2R_22755001 RAL-73 502 chr2R 22767571 22767586 chr2R 22767656 22767671 5 85 2.5 1.0 1.8 1.8 100 chr2R 22767571 intron CG42260 - chr2R 22767621 intron CG42260 - chr2R 22767671 intron CG42260 - chr2R_5_22765001 chr2R_22765001 RAL-73 503 chr2R 22907420 22907435 chr2R 22907494 22907528 13 91 4.0 6.0 5.0 2.2 108 chr2R 22907420 intron nahoda + chr2R 22907474 intron nahoda + chr2R 22907528 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-73 504 chr2R 22951714 22951862 chr2R 22951854 22951948 5 129 0.0 0.0 0.0 5.0 234 chr2R 22951714 3` UTR CR32835 - chr2R 22951831 3` UTR CR32835 - chr2R 22951948 intron CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-73 505 chr2R 22968139 22968161 chr2R 22968228 22968250 4 89 0.5 0.5 0.5 2.7 111 chr2R 22968139 intergenic not near genes chr2R 22968194 intergenic not near genes chr2R 22968250 intergenic not near genes chr2R_4_22965001 chr2R_22965001 RAL-73 506 chr2R 22991632 22991657 chr2R 22991724 22991749 8 92 0.5 1.5 1.0 4.0 117 chr2R 22991632 intron twi + chr2R 22991690 intron twi + chr2R 22991749 intron twi + chr2R_8_22990001 chr2R_22990001 RAL-73 507 chr2R 23061775 23061785 chr2R 23061869 23061879 5 94 2.0 4.0 3.0 1.2 104 chr2R 23061775 3` UTR l(2)06496 - chr2R 23061827 3` UTR l(2)06496 - chr2R 23061879 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-73 508 chr2R 23175052 23175068 chr2R 23175125 23175145 4 76 3.5 7.0 5.2 0.6 93 chr2R 23175052 intron CG34371 - chr2R 23175098 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-73 509 chr2R 23219006 23219022 chr2R 23219245 23219261 4 239 3.5 0.0 1.8 1.4 255 chr2R 23219006 intergenic not near genes chr2R 23219134 intergenic not near genes chr2R 23219261 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-73 510 chr2R 23259804 23259834 chr2R 23260016 23260046 6 212 0.0 1.5 0.8 3.3 242 chr2R 23259804 intergenic not near genes chr2R 23259925 intergenic not near genes chr2R 23260046 intergenic not near genes chr2R_6_23255001 chr2R_23255001 RAL-73 511 chr2R 23356278 23356310 chr2R 23356367 23356398 12 88 2.0 3.0 2.5 3.4 120 chr2R 23356278 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356398 3` UTR,3` UTR Rpi +,CG3500 - chr2R_12_23355001 chr2R_23355001 RAL-73 512 chr2R 23508919 23508932 chr2R 23509036 23509049 4 117 1.5 0.5 1.0 2.0 130 chr2R 23508919 intergenic not near genes chr2R 23508984 intergenic not near genes chr2R 23509049 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-73 513 chr2R 23515246 23515279 chr2R 23515569 23515602 8 322 3.5 0.5 2.0 2.7 356 chr2R 23515246 intergenic not near genes chr2R 23515424 intergenic not near genes chr2R 23515602 intergenic not near genes chr2R_8_23515001 chr2R_23515001 RAL-73 514 chr2R 23529574 23529598 chr2R 23537150 23537168 412 11 7573 7.5 6.0 6.8 1.4 7594 chr2R 23529574 intron bw - chr2R 23533371 intron bw - chr2R 23537168 exon bw - chr2R_11_23530001 chr2R_23530001 RAL-73 515 chr2R 23529601 23529607 chr2R 23537149 23537182 412 4 7556 5.5 5.5 5.5 0.6 7581 chr2R 23529601 exon bw - chr2R 23533392 intron bw - chr2R 23537182 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-73 516 chr2R 23563896 23563917 chr2R 23563976 23563997 6 80 1.5 1.0 1.2 2.7 101 chr2R 23563896 3` UTR Pi3K59F + chr2R 23563946 3` UTR Pi3K59F + chr2R 23563997 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_6_23560001 chr2R_23560001 RAL-73 517 chr2R 23607037 23607063 chr2R 23607118 23607144 8 81 1.0 3.0 2.0 2.7 107 chr2R 23607037 intron CG17664 - chr2R 23607090 intron CG17664 - chr2R 23607144 intron CG17664 - chr2R_8_23605001 chr2R_23605001 RAL-73 518 chr2R 23716489 23716524 chr2R 23716568 23716603 13 79 2.5 3.0 2.8 3.4 114 chr2R 23716489 intron Sesn + chr2R 23716546 intron Sesn + chr2R 23716603 intron Sesn + chr2R_13_23715001 chr2R_23715001 RAL-73 519 chr2R 23739782 23739789 chr2R 23739877 23739885 5 96 0.5 8.5 4.5 0.9 103 chr2R 23739782 intron egl - chr2R 23739834 intron egl - chr2R 23739885 intron egl - chr2R_5_23735001 chr2R_23735001 RAL-73 520 chr2R 23776159 23776172 chr2R 23776234 23776246 5 75 4.0 3.5 3.8 1.0 87 chr2R 23776159 intron CG9850 - chr2R 23776202 intron CG9850 - chr2R 23776246 intron CG9850 - chr2R_5_23775001 chr2R_23775001 RAL-73 521 chr2R 24228395 24228427 chr2R 24228476 24228506 4 80 0.5 2.0 1.2 1.8 111 chr2R 24228395 intron CG30419 - chr2R 24228450 intron CG30419 - chr2R 24228506 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-73 522 chr2R 24292511 24292541 chr2R 24292596 24292624 11 83 2.0 2.0 2.0 3.7 113 chr2R 24292511 intergenic not near genes chr2R 24292568 intergenic not near genes chr2R 24292624 intergenic not near genes chr2R_11_24290001 chr2R_24290001 RAL-73 523 chr2R 24320188 24320205 chr2R 24320265 24320282 8 74 0.5 7.0 3.8 1.7 94 chr2R 24320188 intergenic not near genes chr2R 24320235 intergenic not near genes chr2R 24320282 intergenic not near genes chr2R_8_24320001 chr2R_24320001 RAL-73 524 chr2R 24351427 24351439 chr2R 24351508 24351520 4 81 1.5 3.5 2.5 1.1 93 chr2R 24351427 intron bs + chr2R 24351474 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-73 525 chr2R 24353427 24353461 chr2R 24361789 24361823 roo 7 8362 1.5 1.5 1.5 2.8 8396 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357625 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-73 526 chr2R 24383830 24383854 chr2R 24383911 24383935 4 81 0.0 3.0 1.5 1.6 105 chr2R 24383830 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383935 exon mAChR-A - chr2R_4_24380001 chr2R_24380001 RAL-73 527 chr2R 24509307 24509339 chr2R 24509392 24509424 9 85 2.0 2.0 2.0 3.0 117 chr2R 24509307 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509424 intergenic Letm1 - chr2R_9_24505001 chr2R_24505001 RAL-73 528 chr2R 24542327 24542355 chr2R 24542581 24542609 11 252 1.0 2.0 1.5 4.4 282 chr2R 24542327 intron,intron CG4622 -,ITP + chr2R 24542468 intron,intron CG4622 -,ITP + chr2R 24542609 intron,intron CG4622 -,ITP + chr2R_11_24540001 chr2R_24540001 RAL-73 529 chr2R 24590096 24590143 chr2R 24590204 24590235 9 102 0.0 6.0 3.0 2.2 139 chr2R 24590096 intron pio + chr2R 24590166 intron pio + chr2R 24590235 intron pio + chr2R_9_24590001 chr2R_24590001 RAL-73 530 chr2R 24592958 24592978 chr2R 24593051 24593071 7 93 2.0 3.5 2.8 1.8 113 chr2R 24592958 intron pio + chr2R 24593014 intron pio + chr2R 24593071 intron pio + chr2R_7_24590001 chr2R_24590001 RAL-73 531 chr2R 24707835 24707860 chr2R 24707914 24707939 8 79 6.0 2.0 4.0 1.6 104 chr2R 24707835 intron Mid1 - chr2R 24707887 intron Mid1 - chr2R 24707939 intron Mid1 - chr2R_8_24705001 chr2R_24705001 RAL-73 532 chr2R 24727882 24727916 chr2R 24735390 24735423 mdg1 9 7508 4.0 3.5 3.8 1.9 7541 chr2R 24727882 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-73 533 chr2R 24763609 24763638 chr2R 24765584 24765599 G2 13 1974 4.5 4.5 4.5 2.4 1990 chr2R 24763609 exon CG3894 + chr2R 24764604 intron CG3894 + chr2R 24765599 exon CG3894 + chr2R_13_24760001 chr2R_24760001 RAL-73 534 chr2R 24823808 24823833 chr2R 24823914 24823937 17 105 8.5 4.0 6.2 2.4 129 chr2R 24823808 intron Dll + chr2R 24823872 intron Dll + chr2R 24823937 intron Dll + chr2R_17_24820001 chr2R_24820001 RAL-73 535 chr2R 24859842 24859849 chr2R 24859928 24859935 6 86 3.5 1.5 2.5 1.7 93 chr2R 24859842 5` UTR CR44829 + chr2R 24859888 5` UTR CR44829 + chr2R 24859935 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-73 536 chr2R 25014552 25014575 chr2R 25014628 25014651 8 75 1.5 5.5 3.5 1.8 99 chr2R 25014552 intron uzip + chr2R 25014602 intron uzip + chr2R 25014651 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-73 537 chr2R 25081608 25081632 chr2R 25082704 25082720 5 1094 1.0 4.0 2.5 1.4 1112 chr2R 25081608 intron gol - chr2R 25082164 intron gol - chr2R 25082720 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-73 538 chr2R 25101280 25101309 chr2R 25101382 25101411 5 102 1.5 2.5 2.0 1.7 131 chr2R 25101280 intron lov - chr2R 25101346 intron lov - chr2R 25101411 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-73 539 chr2R 25167686 25167698 chr2R 25167767 25167780 4 82 3.0 1.0 2.0 1.3 94 chr2R 25167686 5` UTR CG34038 + chr2R 25167733 5` UTR CG34038 + chr2R 25167780 5` UTR CG34038 + chr2R_4_25165001 chr2R_25165001 RAL-73 540 chr3L 68982 69008 chr3L 69068 69095 5 87 0.5 2.0 1.2 2.3 113 chr3L 68982 3` UTR Lsp1gamma + chr3L 69038 intergenic Lsp1gamma +,CR44510 + chr3L 69095 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-73 541 chr3L 93814 93823 chr3L 93876 93904 5 70 1.0 5.0 3.0 1.2 90 chr3L 93814 intergenic not near genes chr3L 93859 intergenic not near genes chr3L 93904 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-73 542 chr3L 402688 402711 chr3L 409741 409764 297 9 7053 8.5 5.5 7.0 1.1 7076 chr3L 402688 intergenic not near genes chr3L 406226 intergenic not near genes chr3L 409764 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-73 543 chr3L 439568 439593 chr3L 440476 440483 4 903 5.0 3.5 4.2 0.8 915 chr3L 439568 intron klar - chr3L 440026 intron klar - chr3L 440483 intron klar - chr3L_4_440001 chr3L_440001 RAL-73 544 chr3L 514278 514303 chr3L 514355 514380 13 77 2.5 2.0 2.2 4.1 102 chr3L 514278 intron klar - chr3L 514329 intron klar - chr3L 514380 intron klar - chr3L_13_510001 chr3L_510001 RAL-73 545 chr3L 563977 564003 chr3L 564156 564182 9 179 1.0 2.5 1.8 3.2 205 chr3L 563977 intron hipk + chr3L 564080 intron hipk + chr3L 564182 intron hipk + chr3L_9_560001 chr3L_560001 RAL-73 546 chr3L 789919 789933 chr3L 790404 790418 roo 6 485 2.0 1.5 1.8 2.1 499 chr3L 789919 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790418 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-73 547 chr3L 843722 843737 chr3L 843803 843818 4 81 5.0 0.0 2.5 1.1 96 chr3L 843722 intergenic Gr61a +,CG13889 + chr3L 843770 intergenic Gr61a +,CG13889 + chr3L 843818 intergenic CG13889 +,Gr61a + chr3L_4_840001 chr3L_840001 RAL-73 548 chr3L 857997 858028 chr3L 866478 866491 Tirant 13 8477 2.5 3.5 3.0 3.2 8494 chr3L 857997 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866491 intergenic CG12502 + chr3L_13_860001 chr3L_860001 RAL-73 549 chr3L 933920 933943 chr3L 934023 934046 9 103 0.5 1.5 1.0 4.5 126 chr3L 933920 intron Glut1 + chr3L 933983 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-73 550 chr3L 939772 939802 chr3L 940893 940923 jockey 8 1121 4.0 2.5 3.2 1.9 1151 chr3L 939772 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-73 551 chr3L 1021592 1021629 chr3L 1021668 1021705 16 74 4.0 0.5 2.2 5.0 113 chr3L 1021592 intron trio - chr3L 1021648 intron trio - chr3L 1021705 intron trio - chr3L_16_1020001 chr3L_1020001 RAL-73 552 chr3L 1095026 1095048 chr3L 1095107 1095129 4 80 0.0 2.0 1.0 2.0 103 chr3L 1095026 intron bab1 - chr3L 1095078 intron bab1 - chr3L 1095129 intron bab1 - chr3L_4_1095001 chr3L_1095001 RAL-73 553 chr3L 1115010 1115028 chr3L 1115095 1115113 4 85 0.5 2.0 1.2 1.8 103 chr3L 1115010 intergenic not near genes chr3L 1115062 intergenic not near genes chr3L 1115113 intergenic not near genes chr3L_4_1115001 chr3L_1115001 RAL-73 554 chr3L 1189628 1189651 chr3L 1189710 1189737 6 85 1.5 3.5 2.5 1.7 109 chr3L 1189628 5` UTR CG13912 + chr3L 1189682 5` UTR CG13912 + chr3L 1189737 5` UTR CG13912 + chr3L_6_1185001 chr3L_1185001 RAL-73 555 chr3L 1219596 1219622 chr3L 1227329 1227355 412 11 7733 1.5 4.0 2.8 2.9 7759 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227355 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-73 556 chr3L 1239058 1239094 chr3L 1239249 1239285 11 191 3.5 3.5 3.5 2.4 227 chr3L 1239058 intron CG9194 + chr3L 1239172 intron CG9194 + chr3L 1239285 intron CG9194 + chr3L_11_1235001 chr3L_1235001 RAL-73 557 chr3L 1265103 1265381 chr3L 1265187 1265482 4 93 3.0 1.0 2.0 1.3 379 chr3L 1265103 intron CG9134 + chr3L 1265292 intron CG9134 + chr3L 1265482 intron CG9134 + chr3L_4_1265001 chr3L_1265001 RAL-73 558 chr3L 1315020 1315055 chr3L 1315098 1315133 15 77 24.5 29.5 27.0 0.5 113 chr3L 1315020 exon CG9153 + chr3L 1315076 exon CG9153 + chr3L 1315133 exon CG9153 + chr3L_15_1315001 chr3L_1315001 RAL-73 559 chr3L 1310984 1311014 chr3L 1315844 1315874 17 4860 38.0 28.0 33.0 0.5 4890 chr3L 1310984 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_17_1310001 chr3L_1310001 RAL-73 560 chr3L 1323837 1323867 chr3L 1323927 1323952 6 89 1.0 0.5 0.8 3.3 115 chr3L 1323837 intron,intron Myo61F +,CR45166 - chr3L 1323894 intron,intron Myo61F +,CR45166 - chr3L 1323952 intron,3` UTR Myo61F +,CR45166 - chr3L_6_1320001 chr3L_1320001 RAL-73 561 chr3L 1347161 1347191 chr3L 1347241 1347276 12 83 3.0 4.5 3.8 2.5 115 chr3L 1347161 intron Ptp61F - chr3L 1347218 intron Ptp61F - chr3L 1347276 intron Ptp61F - chr3L_12_1345001 chr3L_1345001 RAL-73 562 chr3L 1361290 1361322 chr3L 1361366 1361397 10 74 3.0 3.5 3.2 2.4 107 chr3L 1361290 intron Ptp61F - chr3L 1361344 intron Ptp61F - chr3L 1361397 intron Ptp61F - chr3L_10_1360001 chr3L_1360001 RAL-73 563 chr3L 1415778 1415801 chr3L 1415860 1415883 7 82 5.0 5.5 5.2 1.1 105 chr3L 1415778 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415883 intron Ptp61F - chr3L_7_1415001 chr3L_1415001 RAL-73 564 chr3L 1463415 1463449 chr3L 1463496 1463530 17 80 3.0 4.5 3.8 3.5 115 chr3L 1463415 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463530 intron Ptp61F - chr3L_17_1460001 chr3L_1460001 RAL-73 565 chr3L 1506001 1506021 chr3L 1513598 1513618 17.6 7 7597 4.0 3.5 3.8 1.5 7617 chr3L 1506001 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513618 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-73 566 chr3L 1569522 1569533 chr3L 1569597 1569609 6 76 1.5 6.0 3.8 1.2 87 chr3L 1569522 5` UTR CG12004 + chr3L 1569566 intron CG12004 + chr3L 1569609 intron CG12004 + chr3L_6_1565001 chr3L_1565001 RAL-73 567 chr3L 1674331 1674357 chr3L 1674414 1674440 10 82 3.0 8.0 5.5 1.5 109 chr3L 1674331 intergenic CG7991 + chr3L 1674386 intergenic CG7991 + chr3L 1674440 intergenic CG7991 + chr3L_10_1670001 chr3L_1670001 RAL-73 568 chr3L 1670411 1670445 chr3L 1681728 1681762 12 11317 14.5 12.5 13.5 0.8 11351 chr3L 1670411 3` UTR CG13930 - chr3L 1676086 intron CG7991 + chr3L 1681762 intron CG7991 + chr3L_12_1675001 chr3L_1675001 RAL-73 569 chr3L 1754690 1754713 chr3L 1754809 1754832 6 119 2.0 2.0 2.0 2.0 142 chr3L 1754690 intron Cht2 - chr3L 1754761 intron Cht2 - chr3L 1754832 intron Cht2 - chr3L_6_1750001 chr3L_1750001 RAL-73 570 chr3L 1869493 1869517 chr3L 1869583 1869612 7 94 3.5 2.5 3.0 1.8 119 chr3L 1869493 intergenic CG12025 + chr3L 1869552 intergenic CG12025 +,CG13924 + chr3L 1869612 intergenic CG12025 +,CG13924 + chr3L_7_1865001 chr3L_1865001 RAL-73 571 chr3L 1905350 1905370 chr3L 1905444 1905464 8 94 4.0 2.5 3.2 1.9 114 chr3L 1905350 intron CG1887 - chr3L 1905407 intron CG1887 - chr3L 1905464 intron CG1887 - chr3L_8_1905001 chr3L_1905001 RAL-73 572 chr3L 1922452 1922464 chr3L 1922530 1922541 7 78 12.0 7.5 9.8 0.6 89 chr3L 1922452 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922541 intron Dbx + chr3L_7_1920001 chr3L_1920001 RAL-73 573 chr3L 2010956 2010972 chr3L 2012025 2012041 4 1069 8.0 29.0 18.5 0.2 1085 chr3L 2010956 intergenic CR44535 - chr3L 2011498 intergenic not near genes chr3L 2012041 intergenic not near genes chr3L_4_2010001 chr3L_2010001 RAL-73 574 chr3L 2018660 2018689 chr3L 2018763 2018794 10 104 2.0 3.5 2.8 2.6 134 chr3L 2018660 intergenic not near genes chr3L 2018727 intergenic not near genes chr3L 2018794 intergenic not near genes chr3L_10_2015001 chr3L_2015001 RAL-73 575 chr3L 2026956 2026987 chr3L 2027032 2027041 10 74 2.0 2.5 2.2 3.1 85 chr3L 2026956 intergenic CG34259 + chr3L 2026998 exon CG34259 + chr3L 2027041 exon CG34259 + chr3L_10_2025001 chr3L_2025001 RAL-73 576 chr3L 2187606 2187627 chr3L 2187687 2187710 7 80 4.5 0.5 2.5 2.0 104 chr3L 2187606 exon CG13810 + chr3L 2187658 3` UTR CG13810 + chr3L 2187710 intergenic CG13810 + chr3L_7_2185001 chr3L_2185001 RAL-73 577 chr3L 2308002 2308035 chr3L 2308108 2308141 9 106 1.0 2.0 1.5 3.6 139 chr3L 2308002 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-73 578 chr3L 2310150 2310179 chr3L 2310893 2310922 11 743 3.5 2.0 2.8 2.9 772 chr3L 2310150 intergenic not near genes chr3L 2310536 intergenic not near genes chr3L 2310922 intergenic not near genes chr3L_11_2310001 chr3L_2310001 RAL-73 579 chr3L 2447512 2447533 chr3L 2456662 2456689 roo 8 9152 2.0 5.0 3.5 1.8 9177 chr3L 2447512 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-73 580 chr3L 2561529 2561555 chr3L 2561606 2561632 5 77 0.0 0.5 0.2 4.2 103 chr3L 2561529 intron msn - chr3L 2561580 intron msn - chr3L 2561632 intron msn - chr3L_5_2560001 chr3L_2560001 RAL-73 581 chr3L 2686257 2686289 chr3L 2686632 2686664 10 372 4.0 4.5 4.2 1.9 407 chr3L 2686257 intron Fife - chr3L 2686460 intron Fife - chr3L 2686664 intron Fife - chr3L_10_2685001 chr3L_2685001 RAL-73 582 chr3L 2854480 2854498 chr3L 2854558 2854576 8 77 3.5 4.0 3.8 1.7 96 chr3L 2854480 intron CG43444 - chr3L 2854528 intron CG43444 - chr3L 2854576 intron CG43444 - chr3L_8_2850001 chr3L_2850001 RAL-73 583 chr3L 2987738 2987755 chr3L 2987999 2988017 6 262 1.0 5.5 3.2 1.4 279 chr3L 2987738 intergenic not near genes chr3L 2987878 intergenic not near genes chr3L 2988017 intergenic not near genes chr3L_6_2985001 chr3L_2985001 RAL-73 584 chr3L 3061301 3061317 chr3L 3069874 3069900 Tirant 5 8581 4.0 2.0 3.0 1.2 8599 chr3L 3061301 intron CG32486 - chr3L 3065600 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-73 585 chr3L 3257092 3257114 chr3L 3257269 3257291 6 177 0.5 2.0 1.2 2.7 199 chr3L 3257092 intergenic not near genes chr3L 3257192 intergenic not near genes chr3L 3257291 intergenic not near genes chr3L_6_3255001 chr3L_3255001 RAL-73 586 chr3L 3259618 3259824 chr3L 3259713 3259924 7 96 0.0 1.5 0.8 3.9 306 chr3L 3259618 intron ckd + chr3L 3259771 intron ckd + chr3L 3259924 intron ckd + chr3L_7_3255001 chr3L_3255001 RAL-73 587 chr3L 3281445 3281456 chr3L 3281935 3281952 Doc 4 494 6.5 9.0 7.8 0.5 507 chr3L 3281445 intron CG12017 + chr3L 3281698 intron CG12017 + chr3L 3281952 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-73 588 chr3L 3281459 3281468 chr3L 3281933 3281964 Doc 4 490 4.5 9.0 6.8 0.5 505 chr3L 3281459 intron CG12017 + chr3L 3281712 intron CG12017 + chr3L 3281964 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-73 589 chr3L 3310294 3310315 chr3L 3310373 3310394 5 79 0.5 2.0 1.2 2.3 100 chr3L 3310294 intron ZnT63C + chr3L 3310344 intron ZnT63C + chr3L 3310394 intron ZnT63C + chr3L_5_3310001 chr3L_3310001 RAL-73 590 chr3L 3450927 3450943 chr3L 3451013 3451031 6 87 4.0 1.0 2.5 1.7 104 chr3L 3450927 intron eIF5B - chr3L 3450979 intron eIF5B - chr3L 3451031 intron eIF5B - chr3L_6_3450001 chr3L_3450001 RAL-73 591 chr3L 3475077 3475110 chr3L 3475521 3475554 jockey 10 444 2.5 3.5 3.0 2.5 477 chr3L 3475077 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-73 592 chr3L 3484418 3484443 chr3L 3484495 3484520 7 76 2.0 1.0 1.5 2.8 102 chr3L 3484418 intron,intron CG42324 +,CG43074 - chr3L 3484469 intron,exon CG42324 +,CG43074 - chr3L 3484520 intron,intron CG42324 +,CG43074 - chr3L_7_3480001 chr3L_3480001 RAL-73 593 chr3L 3565948 3565969 chr3L 3566014 3566045 7 73 1.5 3.5 2.5 2.0 97 chr3L 3565948 intron Eip63E + chr3L 3565996 intron Eip63E + chr3L 3566045 intron Eip63E + chr3L_7_3565001 chr3L_3565001 RAL-73 594 chr3L 3577739 3577760 chr3L 3577817 3577838 6 78 0.0 4.5 2.2 1.9 99 chr3L 3577739 intron Eip63E + chr3L 3577788 intron Eip63E + chr3L 3577838 intron Eip63E + chr3L_6_3575001 chr3L_3575001 RAL-73 595 chr3L 3601296 3601327 chr3L 3606607 3606637 copia 8 5311 2.0 1.0 1.5 3.2 5341 chr3L 3601296 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606637 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-73 596 chr3L 3815055 3815079 chr3L 3815136 3815160 7 81 3.5 1.0 2.2 2.2 105 chr3L 3815055 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815160 intron,intron Scsalpha +,CR43932 - chr3L_7_3815001 chr3L_3815001 RAL-73 597 chr3L 3921393 3921424 chr3L 3921656 3921688 7 263 0.0 3.0 1.5 2.8 295 chr3L 3921393 intron Eip63F-1 - chr3L 3921540 intron Eip63F-1 - chr3L 3921688 intron Eip63F-1 - chr3L_7_3920001 chr3L_3920001 RAL-73 598 chr3L 3953031 3953059 chr3L 3953129 3953157 9 97 1.5 3.5 2.5 2.6 126 chr3L 3953031 intergenic CG14984 - chr3L 3953094 intergenic not near genes chr3L 3953157 intergenic not near genes chr3L_9_3950001 chr3L_3950001 RAL-73 599 chr3L 4342409 4342441 chr3L 4342488 4342520 18 78 5.5 4.5 5.0 3.0 111 chr3L 4342409 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342520 intron Cip4 - chr3L_18_4340001 chr3L_4340001 RAL-73 600 chr3L 4408743 4408748 chr3L 4408900 4408905 4 157 1.0 6.0 3.5 0.9 162 chr3L 4408743 intron DOR + chr3L 4408824 intron DOR + chr3L 4408905 intron DOR + chr3L_4_4405001 chr3L_4405001 RAL-73 601 chr3L 4580302 4580338 chr3L 4580388 4580424 7 85 1.5 0.5 1.0 3.5 122 chr3L 4580302 intron CG42540 + chr3L 4580363 intron CG42540 + chr3L 4580424 intron CG42540 + chr3L_7_4580001 chr3L_4580001 RAL-73 602 chr3L 4604867 4604892 chr3L 4604978 4605003 5 111 4.0 0.5 2.2 1.6 136 chr3L 4604867 intron Src64B - chr3L 4604935 intron Src64B - chr3L 4605003 intron Src64B - chr3L_5_4600001 chr3L_4600001 RAL-73 603 chr3L 4731952 4731973 chr3L 4732054 4732075 4 102 3.0 1.5 2.2 1.2 123 chr3L 4731952 intron RhoGEF64C + chr3L 4732014 intron RhoGEF64C + chr3L 4732075 intron RhoGEF64C + chr3L_4_4730001 chr3L_4730001 RAL-73 604 chr3L 4858306 4858337 chr3L 4858396 4858426 20 88 5.0 7.0 6.0 2.9 120 chr3L 4858306 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_20_4855001 chr3L_4855001 RAL-73 605 chr3L 4901142 4901156 chr3L 4907332 4907346 diver 4 6190 2.0 1.5 1.8 1.4 6204 chr3L 4901142 intergenic CG13704 + chr3L 4904244 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-73 606 chr3L 4927574 4927586 chr3L 4927765 4927795 4 206 2.5 2.0 2.2 1.2 221 chr3L 4927574 intergenic not near genes chr3L 4927684 intergenic not near genes chr3L 4927795 intergenic not near genes chr3L_4_4925001 chr3L_4925001 RAL-73 607 chr3L 4967143 4967174 chr3L 4967249 4967280 7 104 1.5 2.0 1.8 2.5 137 chr3L 4967143 intron Con - chr3L 4967212 intron Con - chr3L 4967280 intron Con - chr3L_7_4965001 chr3L_4965001 RAL-73 608 chr3L 5045464 5045474 chr3L 5050245 5050255 Doc 4 4781 0.5 0.0 0.2 3.3 4791 chr3L 5045464 intron Con - chr3L 5047860 intron Con - chr3L 5050255 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-73 609 chr3L 5104485 5104507 chr3L 5124619 5124641 4 20134 0.0 1.5 0.8 2.2 20156 chr3L 5104485 intergenic not near genes chr3L 5114563 intergenic not near genes chr3L 5124641 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-73 610 chr3L 5203602 5203614 chr3L 5203776 5203805 6 177 22.5 14.0 18.2 0.3 203 chr3L 5203602 intron shep - chr3L 5203704 intron shep - chr3L 5203805 intron shep - chr3L_6_5200001 chr3L_5200001 RAL-73 611 chr3L 5212255 5212270 chr3L 5212327 5212353 9 81 3.0 2.5 2.8 2.4 98 chr3L 5212255 intron shep - chr3L 5212304 intron shep - chr3L 5212353 intron shep - chr3L_9_5210001 chr3L_5210001 RAL-73 612 chr3L 5339833 5339846 chr3L 5340075 5340090 8 243 3.0 1.0 2.0 2.7 257 chr3L 5339833 intergenic not near genes chr3L 5339962 intergenic not near genes chr3L 5340090 intergenic not near genes chr3L_8_5335001 chr3L_5335001 RAL-73 613 chr3L 5388200 5388233 chr3L 5388524 5388557 12 324 2.0 1.5 1.8 4.3 357 chr3L 5388200 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388557 intergenic not near genes chr3L_12_5385001 chr3L_5385001 RAL-73 614 chr3L 5482950 5483094 chr3L 5483159 5483179 10 130 1.0 2.0 1.5 4.0 229 chr3L 5482950 exon CG4835 + chr3L 5483064 exon CG4835 + chr3L 5483179 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-73 615 chr3L 5515863 5515893 chr3L 5515946 5515976 13 83 3.0 5.0 4.0 2.6 113 chr3L 5515863 exon Lkr - chr3L 5515920 intron Lkr - chr3L 5515976 exon Lkr - chr3L_13_5515001 chr3L_5515001 RAL-73 616 chr3L 5836177 5836184 chr3L 5836307 5836314 4 130 1.5 4.0 2.8 1.1 137 chr3L 5836177 intron vn - chr3L 5836246 intron vn - chr3L 5836314 intron vn - chr3L_4_5835001 chr3L_5835001 RAL-73 617 chr3L 5926328 5926351 chr3L 5926508 5926509 BS 4 179 4.5 4.5 4.5 0.7 181 chr3L 5926328 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926509 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-73 618 chr3L 5983831 5983865 chr3L 5983952 5983986 4 121 4.5 0.0 2.2 1.2 155 chr3L 5983831 3` UTR CR45439 - chr3L 5983908 intergenic CR45439 -,CR45440 - chr3L 5983986 intergenic CR45439 -,CR45440 - chr3L_4_5980001 chr3L_5980001 RAL-73 619 chr3L 6052651 6052666 chr3L 6052736 6052751 7 85 7.0 8.0 7.5 0.8 100 chr3L 6052651 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052751 exon Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-73 620 chr3L 6220913 6220946 chr3L 6230065 6230098 roo 5 9152 2.5 4.0 3.2 1.2 9185 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-73 621 chr3L 6668975 6668997 chr3L 6669056 6669078 4 81 0.5 0.0 0.2 3.3 103 chr3L 6668975 intergenic not near genes chr3L 6669026 intergenic not near genes chr3L 6669078 intergenic not near genes chr3L_4_6665001 chr3L_6665001 RAL-73 622 chr3L 6855935 6855950 chr3L 6860719 6860731 Doc 5 4783 3.0 5.0 4.0 1.0 4796 chr3L 6855935 intergenic not near genes chr3L 6858333 intergenic not near genes chr3L 6860731 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-73 623 chr3L 6873221 6873232 chr3L 6873324 6873335 7 102 3.0 4.0 3.5 1.6 114 chr3L 6873221 intergenic not near genes chr3L 6873278 intergenic not near genes chr3L 6873335 intergenic not near genes chr3L_7_6870001 chr3L_6870001 RAL-73 624 chr3L 6887520 6887541 chr3L 6895012 6895033 roo 4 7492 2.0 1.5 1.8 1.4 7513 chr3L 6887520 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895033 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-73 625 chr3L 6958975 6959004 chr3L 6963555 6963584 11 4581 30.5 30.0 30.2 0.4 4609 chr3L 6958975 exon Surf1 + chr3L 6961280 exon sgl - chr3L 6963584 intron sgl - chr3L_11_6960001 chr3L_6960001 RAL-73 626 chr3L 6990720 6990743 chr3L 6990799 6990818 5 78 3.0 1.5 2.2 1.6 98 chr3L 6990720 5` UTR bin + chr3L 6990769 5` UTR bin + chr3L 6990818 5` UTR bin + chr3L_5_6990001 chr3L_6990001 RAL-73 627 chr3L 7244929 7244962 chr3L 7245021 7245054 11 91 2.0 4.0 3.0 2.8 125 chr3L 7244929 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_11_7240001 chr3L_7240001 RAL-73 628 chr3L 7285332 7285352 chr3L 7285444 7285464 5 112 1.5 2.5 2.0 1.7 132 chr3L 7285332 intron unc-13-4A - chr3L 7285398 intron unc-13-4A - chr3L 7285464 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-73 629 chr3L 7318182 7318216 chr3L 7318277 7318311 12 95 1.0 0.5 0.8 6.7 129 chr3L 7318182 intergenic not near genes chr3L 7318246 intergenic not near genes chr3L 7318311 intergenic not near genes chr3L_12_7315001 chr3L_7315001 RAL-73 630 chr3L 7377316 7377341 chr3L 7380421 7380446 297 6 3105 0.0 2.5 1.2 2.7 3130 chr3L 7377316 intron SMSr - chr3L 7378881 intron SMSr - chr3L 7380446 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-73 631 chr3L 7436136 7436147 chr3L 7436213 7436225 7 78 3.0 1.0 2.0 2.3 89 chr3L 7436136 intron CG42458 + chr3L 7436180 intron CG42458 + chr3L 7436225 intron CG42458 + chr3L_7_7435001 chr3L_7435001 RAL-73 632 chr3L 7559490 7559504 chr3L 7559572 7559586 7 82 1.0 8.0 4.5 1.3 96 chr3L 7559490 intron CG14837 - chr3L 7559538 intron CG14837 - chr3L 7559586 intron CG14837 - chr3L_7_7555001 chr3L_7555001 RAL-73 633 chr3L 7595567 7595599 chr3L 7595664 7595696 7 96 2.0 1.0 1.5 2.8 129 chr3L 7595567 intron CG33275 + chr3L 7595632 intron CG33275 + chr3L 7595696 intron CG33275 + chr3L_7_7595001 chr3L_7595001 RAL-73 634 chr3L 7711829 7711856 chr3L 7711901 7711932 10 74 1.5 1.5 1.5 4.0 103 chr3L 7711829 intron,intron CG32373 +,Ank2 - chr3L 7711880 intron,intron CG32373 +,Ank2 - chr3L 7711932 intron,intron CG32373 +,Ank2 - chr3L_10_7710001 chr3L_7710001 RAL-73 635 chr3L 7883744 7883771 chr3L 7883901 7883928 7 157 2.5 0.0 1.2 3.2 184 chr3L 7883744 intron CG32365 + chr3L 7883836 intron CG32365 + chr3L 7883928 intron CG32365 + chr3L_7_7880001 chr3L_7880001 RAL-73 636 chr3L 7992422 7992453 chr3L 7992501 7992532 9 78 0.5 4.0 2.2 2.8 110 chr3L 7992422 intron nmo + chr3L 7992477 intron nmo + chr3L 7992532 intron nmo + chr3L_9_7990001 chr3L_7990001 RAL-73 637 chr3L 8062945 8062965 chr3L 8063081 8063101 5 135 0.5 0.5 0.5 3.3 156 chr3L 8062945 intergenic not near genes chr3L 8063023 intergenic not near genes chr3L 8063101 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-73 638 chr3L 8208125 8208148 chr3L 8208257 8208280 6 132 4.0 0.0 2.0 2.0 155 chr3L 8208125 intergenic not near genes chr3L 8208202 intergenic not near genes chr3L 8208280 intergenic not near genes chr3L_6_8205001 chr3L_8205001 RAL-73 639 chr3L 8214733 8214760 chr3L 8214819 8214845 4 86 2.0 2.0 2.0 1.3 112 chr3L 8214733 intergenic not near genes chr3L 8214789 intergenic CG8012 + chr3L 8214845 intergenic CG8012 + chr3L_4_8210001 chr3L_8210001 RAL-73 640 chr3L 8232249 8232268 chr3L 8232327 8232350 5 79 6.0 3.0 4.5 0.9 101 chr3L 8232249 intron CG7213 - chr3L 8232300 intron CG7213 - chr3L 8232350 intron CG7213 - chr3L_5_8230001 chr3L_8230001 RAL-73 641 chr3L 8243816 8243842 chr3L 8243899 8243925 7 83 1.5 0.5 1.0 3.5 109 chr3L 8243816 intron Dscam4 + chr3L 8243870 intron Dscam4 + chr3L 8243925 intron Dscam4 + chr3L_7_8240001 chr3L_8240001 RAL-73 642 chr3L 8295791 8295824 chr3L 8295949 8295982 10 158 1.0 2.0 1.5 4.0 191 chr3L 8295791 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295982 intergenic not near genes chr3L_10_8295001 chr3L_8295001 RAL-73 643 chr3L 8498295 8498330 chr3L 8505762 8505797 blood 4 7466 1.0 1.0 1.0 2.0 7502 chr3L 8498295 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505797 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-73 644 chr3L 8576976 8577000 chr3L 8577059 8577084 11 84 3.5 3.5 3.5 2.4 108 chr3L 8576976 5` UTR CG43078 + chr3L 8577030 5` UTR CG43078 + chr3L 8577084 5` UTR CG43078 + chr3L_11_8575001 chr3L_8575001 RAL-73 645 chr3L 8643658 8643672 chr3L 8643743 8643757 5 85 0.0 3.0 1.5 2.0 99 chr3L 8643658 intergenic Cpr66D + chr3L 8643708 intergenic Cpr66D + chr3L 8643757 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-73 646 chr3L 8690602 8690634 chr3L 8690849 8690881 15 246 1.5 4.0 2.8 3.9 279 chr3L 8690602 intergenic not near genes chr3L 8690742 intergenic not near genes chr3L 8690881 intergenic not near genes chr3L_15_8690001 chr3L_8690001 RAL-73 647 chr3L 8712884 8712903 chr3L 8713178 8713192 4 290 36.5 10.5 23.5 0.2 308 chr3L 8712884 intergenic not near genes chr3L 8713038 intergenic not near genes chr3L 8713192 intergenic not near genes chr3L_4_8710001 chr3L_8710001 RAL-73 648 chr3L 8791278 8791289 chr3L 8796698 8796709 I-element 4 5420 6.5 0.0 3.2 1.0 5431 chr3L 8791278 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796709 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-73 649 chr3L 8849213 8849240 chr3L 8849290 8849320 7 79 3.0 0.0 1.5 2.8 107 chr3L 8849213 intron dally + chr3L 8849266 intron dally + chr3L 8849320 intron dally + chr3L_7_8845001 chr3L_8845001 RAL-73 650 chr3L 9003947 9003975 chr3L 9004030 9004060 8 85 0.5 1.0 0.8 4.4 113 chr3L 9003947 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004060 intergenic not near genes chr3L_8_9000001 chr3L_9000001 RAL-73 651 chr3L 9076925 9076954 chr3L 9084485 9084514 412 11 7560 3.0 3.0 3.0 2.8 7589 chr3L 9076925 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084514 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-73 652 chr3L 9130561 9130582 chr3L 9134322 9134343 412 13 3761 5.0 2.0 3.5 2.9 3782 chr3L 9130561 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_13_9130001 chr3L_9130001 RAL-73 653 chr3L 9219244 9219276 chr3L 9219913 9219948 jockey 10 671 3.5 2.5 3.0 2.5 704 chr3L 9219244 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219948 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-73 654 chr3L 9320404 9320426 chr3L 9320485 9320506 8 81 1.5 3.5 2.5 2.3 102 chr3L 9320404 intergenic not near genes chr3L 9320455 intergenic not near genes chr3L 9320506 intergenic not near genes chr3L_8_9320001 chr3L_9320001 RAL-73 655 chr3L 9533759 9533777 chr3L 9541318 9541318 412 5 7552 6.0 5.0 5.5 0.8 7559 chr3L 9533759 intergenic not near genes chr3L 9537538 intergenic not near genes chr3L 9541318 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-73 656 chr3L 9546657 9546672 chr3L 9546812 9546826 7 155 0.0 5.5 2.8 1.8 169 chr3L 9546657 intergenic not near genes chr3L 9546742 intergenic CG42673 + chr3L 9546826 intergenic CG42673 + chr3L_7_9545001 chr3L_9545001 RAL-73 657 chr3L 9575919 9575936 chr3L 9580997 9581014 jockey 6 5077 5.0 3.0 4.0 1.2 5095 chr3L 9575919 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-73 658 chr3L 9639049 9639061 chr3L 9639134 9639146 4 85 0.0 2.0 1.0 2.0 97 chr3L 9639049 intron fry - chr3L 9639098 intron fry - chr3L 9639146 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-73 659 chr3L 9646471 9646483 chr3L 9646596 9646608 4 125 4.0 0.0 2.0 1.3 137 chr3L 9646471 intron,intron fry -,CG33696 + chr3L 9646540 intron,intron fry -,CG33696 + chr3L 9646608 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-73 660 chr3L 9907151 9907171 chr3L 9907252 9907272 5 101 0.5 1.5 1.0 2.5 121 chr3L 9907151 intergenic not near genes chr3L 9907212 intergenic not near genes chr3L 9907272 intergenic not near genes chr3L_5_9905001 chr3L_9905001 RAL-73 661 chr3L 9918889 9918913 chr3L 9918984 9919008 8 95 2.5 1.5 2.0 2.7 119 chr3L 9918889 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919008 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-73 662 chr3L 9951197 9951232 chr3L 9951284 9951318 8 86 1.0 3.5 2.2 2.5 121 chr3L 9951197 intron CG34356 + chr3L 9951258 intron CG34356 + chr3L 9951318 intron CG34356 + chr3L_8_9950001 chr3L_9950001 RAL-73 663 chr3L 10161435 10161458 chr3L 10161514 10161537 8 79 0.0 3.0 1.5 3.2 102 chr3L 10161435 intron dpr10 - chr3L 10161486 intron dpr10 - chr3L 10161537 intron dpr10 - chr3L_8_10160001 chr3L_10160001 RAL-73 664 chr3L 10272503 10272530 chr3L 10272609 10272609 10 101 1.5 4.5 3.0 2.5 106 chr3L 10272503 intergenic not near genes chr3L 10272556 intergenic not near genes chr3L 10272609 intergenic not near genes chr3L_10_10270001 chr3L_10270001 RAL-73 665 chr3L 10308740 10308759 chr3L 10308817 10308836 4 76 3.0 2.0 2.5 1.1 96 chr3L 10308740 intergenic not near genes chr3L 10308788 intergenic not near genes chr3L 10308836 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-73 666 chr3L 10337625 10337640 chr3L 10337850 10337865 4 225 1.0 2.0 1.5 1.6 240 chr3L 10337625 intergenic not near genes chr3L 10337745 intergenic not near genes chr3L 10337865 intergenic not near genes chr3L_4_10335001 chr3L_10335001 RAL-73 667 chr3L 10381711 10381730 chr3L 10381795 10381812 4 84 3.5 2.5 3.0 1.0 101 chr3L 10381711 intergenic not near genes chr3L 10381762 intergenic not near genes chr3L 10381812 intergenic not near genes chr3L_4_10380001 chr3L_10380001 RAL-73 668 chr3L 10414952 10414975 chr3L 10417324 10417347 Doc 6 2370 0.5 3.0 1.8 2.1 2395 chr3L 10414952 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-73 669 chr3L 10417571 10417600 chr3L 10417648 10417677 12 76 6.0 5.5 5.8 1.8 106 chr3L 10417571 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417677 intergenic not near genes chr3L_12_10415001 chr3L_10415001 RAL-73 670 chr3L 10658095 10658188 chr3L 10658172 10658307 7 104 0.5 0.5 0.5 4.7 212 chr3L 10658095 intron CG32066 - chr3L 10658201 intron CG32066 - chr3L 10658307 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-73 671 chr3L 10762832 10762859 chr3L 10762916 10762942 9 82 1.0 4.5 2.8 2.4 110 chr3L 10762832 intergenic not near genes chr3L 10762887 intergenic not near genes chr3L 10762942 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-73 672 chr3L 11087058 11087088 chr3L 11088846 11088877 S-element 5 1788 1.5 0.5 1.0 2.5 1819 chr3L 11087058 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-73 673 chr3L 11135531 11135789 chr3L 11135761 11135874 6 109 0.5 0.5 0.5 4.0 343 chr3L 11135531 intergenic CG14143 + chr3L 11135702 intergenic CG14143 +,CG32082 + chr3L 11135874 intergenic CG32082 +,CG14143 + chr3L_6_11135001 chr3L_11135001 RAL-73 674 chr3L 11304620 11304639 chr3L 11304715 11304735 6 95 3.0 0.5 1.8 2.1 115 chr3L 11304620 intergenic not near genes chr3L 11304678 intergenic not near genes chr3L 11304735 intergenic not near genes chr3L_6_11300001 chr3L_11300001 RAL-73 675 chr3L 11329700 11329724 chr3L 11332896 11332929 jockey 5 3203 2.5 3.5 3.0 1.2 3229 chr3L 11329700 intergenic not near genes chr3L 11331314 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-73 676 chr3L 11564794 11564807 chr3L 11572404 11572432 412 7 7622 6.0 5.5 5.8 1.0 7638 chr3L 11564794 exon CG33267 + chr3L 11568613 intron CG33267 + chr3L 11572432 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-73 677 chr3L 11579558 11579570 chr3L 11579664 11579676 5 106 2.0 1.5 1.8 1.8 118 chr3L 11579558 intergenic CG43390 - chr3L 11579617 intergenic CG43390 - chr3L 11579676 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-73 678 chr3L 11588745 11588759 chr3L 11588901 11588913 4 156 0.5 1.5 1.0 2.0 168 chr3L 11588745 intergenic not near genes chr3L 11588829 intergenic not near genes chr3L 11588913 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-73 679 chr3L 11678108 11678121 chr3L 11678195 11678208 4 87 0.5 2.0 1.2 1.8 100 chr3L 11678108 intron CG32085 - chr3L 11678158 intron CG32085 - chr3L 11678208 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-73 680 chr3L 11744014 11744032 chr3L 11744122 11744140 6 108 6.5 0.0 3.2 1.4 126 chr3L 11744014 exon CG6024 - chr3L 11744077 intron CG6024 - chr3L 11744140 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-73 681 chr3L 11849331 11849347 chr3L 11849431 11849447 4 100 2.5 0.0 1.2 1.8 116 chr3L 11849331 intergenic not near genes chr3L 11849389 intergenic not near genes chr3L 11849447 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-73 682 chr3L 11864554 11864568 chr3L 11865849 11865863 pogo 4 1294 5.5 1.0 3.2 1.0 1309 chr3L 11864554 intron CG44837 - chr3L 11865208 intron CG44837 - chr3L 11865863 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-73 683 chr3L 12052704 12052738 chr3L 12052793 12052827 5 89 2.0 1.0 1.5 2.0 123 chr3L 12052704 intron rols - chr3L 12052766 intron rols - chr3L 12052827 intron rols - chr3L_5_12050001 chr3L_12050001 RAL-73 684 chr3L 12089087 12089106 chr3L 12089167 12089186 10 80 2.0 2.0 2.0 3.3 99 chr3L 12089087 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089186 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-73 685 chr3L 12304090 12304115 chr3L 12304166 12304191 10 75 1.5 6.0 3.8 2.1 101 chr3L 12304090 intergenic not near genes chr3L 12304140 intergenic not near genes chr3L 12304191 intergenic not near genes chr3L_10_12300001 chr3L_12300001 RAL-73 686 chr3L 12335385 12335416 chr3L 12335464 12335488 12 76 4.0 6.0 5.0 2.0 103 chr3L 12335385 exon CG32105 + chr3L 12335436 3` UTR CG32105 + chr3L 12335488 3` UTR CG32105 + chr3L_12_12335001 chr3L_12335001 RAL-73 687 chr3L 12353921 12353952 chr3L 12354009 12354041 7 87 2.0 5.5 3.8 1.5 120 chr3L 12353921 intergenic not near genes chr3L 12353981 intergenic not near genes chr3L 12354041 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-73 688 chr3L 12392460 12392472 chr3L 12392579 12392591 8 118 4.0 3.5 3.8 1.7 131 chr3L 12392460 intergenic not near genes chr3L 12392526 intergenic not near genes chr3L 12392591 intergenic not near genes chr3L_8_12390001 chr3L_12390001 RAL-73 689 chr3L 12446274 12446300 chr3L 12446352 12446377 5 75 1.0 4.0 2.5 1.4 103 chr3L 12446274 intergenic not near genes chr3L 12446326 intergenic not near genes chr3L 12446377 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-73 690 chr3L 12647948 12647972 chr3L 12648024 12648048 8 75 4.0 1.0 2.5 2.3 100 chr3L 12647948 5` UTR CR32111 + chr3L 12647998 5` UTR CR32111 + chr3L 12648048 5` UTR CR32111 + chr3L_8_12645001 chr3L_12645001 RAL-73 691 chr3L 12706642 12706656 chr3L 12706769 12706783 4 127 1.0 2.0 1.5 1.6 141 chr3L 12706642 intron mirr + chr3L 12706712 intron mirr + chr3L 12706783 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-73 692 chr3L 12801992 12802009 chr3L 12802058 12802085 6 73 1.0 1.0 1.0 3.0 93 chr3L 12801992 intron Atg1 - chr3L 12802038 intron Atg1 - chr3L 12802085 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-73 693 chr3L 12894802 12894822 chr3L 12894879 12894894 11 77 4.5 6.5 5.5 1.7 92 chr3L 12894802 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_11_12890001 chr3L_12890001 RAL-73 694 chr3L 12980524 12980544 chr3L 12980612 12980632 7 87 2.5 0.0 1.2 3.2 108 chr3L 12980524 intergenic not near genes chr3L 12980578 intergenic not near genes chr3L 12980632 intergenic not near genes chr3L_7_12980001 chr3L_12980001 RAL-73 695 chr3L 13007695 13007702 chr3L 13007773 13007781 5 79 5.0 2.5 3.8 1.0 86 chr3L 13007695 exon CG11263 + chr3L 13007738 3` UTR CG11263 + chr3L 13007781 3` UTR CG11263 + chr3L_5_13005001 chr3L_13005001 RAL-73 696 chr3L 13090879 13090912 chr3L 13090990 13091023 5 111 0.0 2.0 1.0 2.5 144 chr3L 13090879 intergenic not near genes chr3L 13090951 intergenic not near genes chr3L 13091023 intergenic not near genes chr3L_5_13090001 chr3L_13090001 RAL-73 697 chr3L 13161812 13161834 chr3L 13162098 13162119 4 285 3.5 1.5 2.5 1.1 307 chr3L 13161812 intergenic not near genes chr3L 13161966 intergenic not near genes chr3L 13162119 intergenic not near genes chr3L_4_13160001 chr3L_13160001 RAL-73 698 chr3L 13380539 13380575 chr3L 13380634 13380669 19 94 1.5 5.5 3.5 4.2 130 chr3L 13380539 exon CG14107 - chr3L 13380604 exon CG14107 - chr3L 13380669 exon CG14107 - chr3L_19_13380001 chr3L_13380001 RAL-73 699 chr3L 13455752 13455774 chr3L 13455907 13455929 6 154 0.0 1.0 0.5 4.0 177 chr3L 13455752 intron CG10738 + chr3L 13455840 intron CG10738 + chr3L 13455929 intron CG10738 + chr3L_6_13455001 chr3L_13455001 RAL-73 700 chr3L 13629531 13629764 chr3L 13629640 13629859 20 96 1.5 6.5 4.0 4.0 328 chr3L 13629531 intron bru-3 - chr3L 13629695 intron bru-3 - chr3L 13629859 intron bru-3 - chr3L_20_13625001 chr3L_13625001 RAL-73 701 chr3L 13841518 13841546 chr3L 13841602 13841611 14 78 2.0 5.0 3.5 3.1 93 chr3L 13841518 exon CG8757 - chr3L 13841564 intron CG8757 - chr3L 13841611 intron CG8757 - chr3L_14_13840001 chr3L_13840001 RAL-73 702 chr3L 14038721 14038753 chr3L 14038936 14038968 5 215 0.5 1.5 1.0 2.5 247 chr3L 14038721 intron Hsc70Cb + chr3L 14038844 intron Hsc70Cb + chr3L 14038968 intron Hsc70Cb + chr3L_5_14035001 chr3L_14035001 RAL-73 703 chr3L 14245567 14245587 chr3L 14245661 14245681 1360 5 94 7.5 1.5 4.5 0.9 114 chr3L 14245567 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245681 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-73 704 chr3L 14262580 14262605 chr3L 14262673 14262698 4 93 1.0 0.0 0.5 2.7 118 chr3L 14262580 intergenic not near genes chr3L 14262639 intergenic not near genes chr3L 14262698 intergenic not near genes chr3L_4_14260001 chr3L_14260001 RAL-73 705 chr3L 14265184 14265202 chr3L 14265287 14265305 4 103 0.0 1.0 0.5 2.7 121 chr3L 14265184 intergenic not near genes chr3L 14265244 intergenic not near genes chr3L 14265305 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-73 706 chr3L 14282586 14282605 chr3L 14282666 14282685 14 80 4.0 5.0 4.5 2.5 99 chr3L 14282586 intron fz + chr3L 14282636 intron fz + chr3L 14282685 intron fz + chr3L_14_14280001 chr3L_14280001 RAL-73 707 chr3L 14295991 14296012 chr3L 14296467 14296498 roo 7 485 4.0 1.0 2.5 2.0 507 chr3L 14295991 intron fz + chr3L 14296244 intron fz + chr3L 14296498 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-73 708 chr3L 14312026 14312036 chr3L 14316839 14316849 X-element 4 4814 2.5 2.5 2.5 1.1 4823 chr3L 14312026 exon fz + chr3L 14314438 intron fz + chr3L 14316849 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-73 709 chr3L 14312037 14312058 chr3L 14316835 14316849 X-element 6 4805 0.5 2.0 1.2 2.7 4812 chr3L 14312037 exon fz + chr3L 14314443 intron fz + chr3L 14316849 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-73 710 chr3L 14348904 14348918 chr3L 14348990 14349004 6 86 0.0 3.5 1.8 2.1 100 chr3L 14348904 intron fz + chr3L 14348954 intron fz + chr3L 14349004 intron fz + chr3L_6_14345001 chr3L_14345001 RAL-73 711 chr3L 14370021 14370044 chr3L 14370097 14370121 9 79 4.0 3.5 3.8 1.9 100 chr3L 14370021 intergenic CG13481 - chr3L 14370071 intergenic CG13481 - chr3L 14370121 intergenic CG13481 - chr3L_9_14370001 chr3L_14370001 RAL-73 712 chr3L 14502440 14502470 chr3L 14502596 14502626 7 156 0.0 2.5 1.2 3.2 186 chr3L 14502440 intron bbg - chr3L 14502533 intron bbg - chr3L 14502626 intron bbg - chr3L_7_14500001 chr3L_14500001 RAL-73 713 chr3L 14663355 14663374 chr3L 14663446 14663465 4 91 1.5 2.5 2.0 1.3 110 chr3L 14663355 intron dlp + chr3L 14663410 intron dlp + chr3L 14663465 intron dlp + chr3L_4_14660001 chr3L_14660001 RAL-73 714 chr3L 14705056 14705084 chr3L 14705135 14705163 5 79 0.0 2.5 1.2 2.3 107 chr3L 14705056 intron ome + chr3L 14705110 intron ome + chr3L 14705163 intron ome + chr3L_5_14705001 chr3L_14705001 RAL-73 715 chr3L 14721183 14721209 chr3L 14723026 14723052 Rt1c 15 1843 4.5 4.5 4.5 2.7 1869 chr3L 14721183 intron ome + chr3L 14722118 intron ome + chr3L 14723052 intron ome + chr3L_15_14720001 chr3L_14720001 RAL-73 716 chr3L 14740902 14740917 chr3L 14740991 14741006 4 89 0.5 0.5 0.5 2.7 104 chr3L 14740902 intron ome + chr3L 14740954 intron ome + chr3L 14741006 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-73 717 chr3L 14958434 14958449 chr3L 14958517 14958530 5 83 1.0 3.0 2.0 1.7 96 chr3L 14958434 intergenic not near genes chr3L 14958482 intergenic not near genes chr3L 14958530 intergenic not near genes chr3L_5_14955001 chr3L_14955001 RAL-73 718 chr3L 15257436 15257450 chr3L 15257649 15257663 8 213 2.0 1.5 1.8 2.9 227 chr3L 15257436 intergenic not near genes chr3L 15257550 intergenic not near genes chr3L 15257663 intergenic not near genes chr3L_8_15255001 chr3L_15255001 RAL-73 719 chr3L 15361141 15361174 chr3L 15361217 15361250 14 75 4.0 2.5 3.2 3.3 109 chr3L 15361141 intergenic not near genes chr3L 15361196 intergenic not near genes chr3L 15361250 intergenic not near genes chr3L_14_15360001 chr3L_15360001 RAL-73 720 chr3L 15679179 15679198 chr3L 15679511 15679528 4 332 3.5 1.0 2.2 1.2 349 chr3L 15679179 intergenic not near genes chr3L 15679354 intergenic CG7304 + chr3L 15679528 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 RAL-73 721 chr3L 15737381 15737394 chr3L 15737471 15737484 4 90 0.0 1.0 0.5 2.7 103 chr3L 15737381 intergenic not near genes chr3L 15737432 intergenic not near genes chr3L 15737484 intergenic not near genes chr3L_4_15735001 chr3L_15735001 RAL-73 722 chr3L 15742961 15742989 chr3L 15743121 15743149 6 160 1.5 0.0 0.8 3.3 188 chr3L 15742961 intergenic not near genes chr3L 15743055 intergenic not near genes chr3L 15743149 intergenic not near genes chr3L_6_15740001 chr3L_15740001 RAL-73 723 chr3L 15756879 15756908 chr3L 15756962 15756991 5 82 2.0 0.0 1.0 2.5 112 chr3L 15756879 intergenic not near genes chr3L 15756935 intergenic not near genes chr3L 15756991 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-73 724 chr3L 15899225 15899240 chr3L 15899792 15899806 jockey 5 566 5.5 2.5 4.0 1.0 581 chr3L 15899225 intergenic pHCl - chr3L 15899516 intergenic pHCl - chr3L 15899806 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-73 725 chr3L 15899243 15899259 chr3L 15899788 15899811 jockey 5 557 2.5 2.5 2.5 1.4 568 chr3L 15899243 intergenic pHCl - chr3L 15899527 intergenic pHCl - chr3L 15899811 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-73 726 chr3L 15958895 15958923 chr3L 15958972 15959000 12 77 3.5 2.0 2.8 3.2 105 chr3L 15958895 5` UTR CG17032 + chr3L 15958948 5` UTR CG17032 + chr3L 15959000 5` UTR CG17032 + chr3L_12_15955001 chr3L_15955001 RAL-73 727 chr3L 16180348 16180370 chr3L 16180450 16180472 5 102 2.5 0.5 1.5 2.0 124 chr3L 16180348 intergenic not near genes chr3L 16180410 intergenic not near genes chr3L 16180472 intergenic not near genes chr3L_5_16180001 chr3L_16180001 RAL-73 728 chr3L 16304874 16304888 chr3L 16304951 16304966 4 78 2.0 0.0 1.0 2.0 92 chr3L 16304874 intergenic CG43249 +,CG13043 - chr3L 16304920 intergenic CG43249 +,CG13043 - chr3L 16304966 intergenic CG13043 -,CG43249 + chr3L_4_16300001 chr3L_16300001 RAL-73 729 chr3L 16443850 16443876 chr3L 16446190 16446216 Doc 6 2340 0.5 2.5 1.5 2.4 2366 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446216 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-73 730 chr3L 16493978 16494008 chr3L 16494495 16494525 jockey 6 517 4.0 3.0 3.5 1.3 547 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494525 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-73 731 chr3L 16515009 16515044 chr3L 16515087 16515122 10 75 5.0 2.5 3.8 2.1 113 chr3L 16515009 intron CG43373 - chr3L 16515066 intron CG43373 - chr3L 16515122 intron CG43373 - chr3L_10_16515001 chr3L_16515001 RAL-73 732 chr3L 16560304 16560330 chr3L 16560389 16560415 5 85 3.5 2.5 3.0 1.2 111 chr3L 16560304 intergenic not near genes chr3L 16560360 intergenic not near genes chr3L 16560415 intergenic not near genes chr3L_5_16560001 chr3L_16560001 RAL-73 733 chr3L 16581770 16581797 chr3L 16582133 16582161 12 364 3.0 1.5 2.2 3.8 391 chr3L 16581770 5` UTR CR43727 + chr3L 16581966 5` UTR CR43727 + chr3L 16582161 5` UTR CR43727 + chr3L_12_16580001 chr3L_16580001 RAL-73 734 chr3L 16817879 16817905 chr3L 16818019 16818045 9 140 1.5 6.0 3.8 1.9 166 chr3L 16817879 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818045 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-73 735 chr3L 16861030 16861054 chr3L 16861132 16861156 7 102 1.0 1.0 1.0 3.5 126 chr3L 16861030 intron,exon Rh4 -,CG13029 + chr3L 16861093 intron,intron Rh4 -,CG13029 + chr3L 16861156 intron,exon Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-73 736 chr3L 16945726 16945760 chr3L 16954879 16954912 roo 11 9151 6.0 0.5 3.2 2.6 9186 chr3L 16945726 exon Obp73a + chr3L 16950319 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-73 737 chr3L 17085003 17085030 chr3L 17094151 17094179 roo 7 9149 1.0 0.0 0.5 4.7 9176 chr3L 17085003 intron Rbp6 - chr3L 17089591 intron Rbp6 - chr3L 17094179 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-73 738 chr3L 17142732 17142760 chr3L 17142960 17142988 12 228 3.0 4.0 3.5 2.7 256 chr3L 17142732 intron Rbp6 - chr3L 17142860 intron Rbp6 - chr3L 17142988 intron Rbp6 - chr3L_12_17140001 chr3L_17140001 RAL-73 739 chr3L 17146966 17146987 chr3L 17147048 17147069 5 82 0.0 3.0 1.5 2.0 103 chr3L 17146966 intron Rbp6 - chr3L 17147018 intron Rbp6 - chr3L 17147069 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-73 740 chr3L 17202468 17202496 chr3L 17202630 17202658 9 162 3.5 0.5 2.0 3.0 190 chr3L 17202468 intron Rbp6 - chr3L 17202563 intron Rbp6 - chr3L 17202658 intron Rbp6 - chr3L_9_17200001 chr3L_17200001 RAL-73 741 chr3L 17510748 17510765 chr3L 17510832 17510849 4 84 2.0 3.5 2.8 1.1 101 chr3L 17510748 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-73 742 chr3L 17516978 17517004 chr3L 17524536 17524562 412 6 7557 2.5 5.0 3.8 1.2 7584 chr3L 17516978 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524562 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-73 743 chr3L 17790453 17790487 chr3L 17790593 17790628 17 140 2.5 0.0 1.2 7.7 175 chr3L 17790453 intergenic not near genes chr3L 17790540 intergenic not near genes chr3L 17790628 intergenic CG42815 - chr3L_17_17790001 chr3L_17790001 RAL-73 744 chr3L 17968143 17968169 chr3L 17968224 17968250 4 81 1.5 2.0 1.8 1.4 107 chr3L 17968143 intron Eip75B - chr3L 17968196 intron Eip75B - chr3L 17968250 intron Eip75B - chr3L_4_17965001 chr3L_17965001 RAL-73 745 chr3L 18004071 18004086 chr3L 18004134 18004161 6 74 0.5 1.0 0.8 3.3 90 chr3L 18004071 intron Eip75B - chr3L 18004116 intron Eip75B - chr3L 18004161 intron Eip75B - chr3L_6_18000001 chr3L_18000001 RAL-73 746 chr3L 18101704 18101729 chr3L 18101809 18101834 6 104 2.0 1.5 1.8 2.1 130 chr3L 18101704 intron CG13698 - chr3L 18101769 intron CG13698 - chr3L 18101834 intron CG13698 - chr3L_6_18100001 chr3L_18100001 RAL-73 747 chr3L 18106254 18106281 chr3L 18106373 18106400 6 119 2.0 0.0 1.0 3.0 146 chr3L 18106254 intergenic CG13698 -,mRpS26 + chr3L 18106327 intergenic CG13698 -,mRpS26 + chr3L 18106400 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-73 748 chr3L 18248951 18248987 chr3L 18249049 18249085 5 97 0.5 2.0 1.2 2.3 134 chr3L 18248951 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249085 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-73 749 chr3L 18456274 18456294 chr3L 18456362 18456382 5 88 2.0 0.5 1.2 2.3 108 chr3L 18456274 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456382 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-73 750 chr3L 18546709 18546723 chr3L 18546803 18546816 6 94 2.5 2.0 2.2 1.9 107 chr3L 18546709 intergenic not near genes chr3L 18546762 intergenic not near genes chr3L 18546816 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-73 751 chr3L 18567040 18567053 chr3L 18567125 18567139 4 86 2.5 3.0 2.8 1.1 99 chr3L 18567040 intron AstC-R1 + chr3L 18567090 intron AstC-R1 + chr3L 18567139 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-73 752 chr3L 18579578 18579594 chr3L 18579705 18579722 5 128 0.0 6.0 3.0 1.2 144 chr3L 18579578 intergenic not near genes chr3L 18579650 intergenic not near genes chr3L 18579722 intergenic not near genes chr3L_5_18575001 chr3L_18575001 RAL-73 753 chr3L 18606770 18606782 chr3L 18606945 18606980 6 188 1.0 0.0 0.5 4.0 210 chr3L 18606770 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606875 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606980 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_6_18605001 chr3L_18605001 RAL-73 754 chr3L 18638577 18638595 chr3L 18638671 18638689 4 94 1.0 0.0 0.5 2.7 112 chr3L 18638577 intron MYPT-75D + chr3L 18638633 intron MYPT-75D + chr3L 18638689 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-73 755 chr3L 18721770 18721804 chr3L 18721861 18721895 7 91 1.5 1.0 1.2 3.2 125 chr3L 18721770 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_7_18720001 chr3L_18720001 RAL-73 756 chr3L 18772413 18772442 chr3L 18781094 18781123 roo 5 8681 1.0 2.0 1.5 2.0 8710 chr3L 18772413 intron ftz-f1 - chr3L 18776768 intron ftz-f1 - chr3L 18781123 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-73 757 chr3L 18833780 18833801 chr3L 18834941 18834965 1360 6 1163 1.0 0.0 0.5 4.0 1185 chr3L 18833780 intron Indy - chr3L 18834372 intron Indy - chr3L 18834965 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-73 758 chr3L 18839735 18839766 chr3L 18839818 18839849 5 83 0.5 1.5 1.0 2.5 114 chr3L 18839735 intron Indy - chr3L 18839792 intron Indy - chr3L 18839849 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-73 759 chr3L 19082036 19082064 chr3L 19082138 19082166 9 102 1.5 3.5 2.5 2.6 130 chr3L 19082036 intron Mkp3 - chr3L 19082101 intron Mkp3 - chr3L 19082166 intron Mkp3 - chr3L_9_19080001 chr3L_19080001 RAL-73 760 chr3L 19115643 19115661 chr3L 19115818 19115839 BS 5 177 3.5 2.0 2.8 1.3 196 chr3L 19115643 intron CG14082 - chr3L 19115741 intron CG14082 - chr3L 19115839 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-73 761 chr3L 19117040 19117071 chr3L 19124487 19124518 mdg1 11 7447 3.0 0.5 1.8 3.9 7478 chr3L 19117040 intron CG14082 - chr3L 19120779 intron CG14082 - chr3L 19124518 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-73 762 chr3L 19138556 19138586 chr3L 19138637 19138649 8 78 1.5 4.0 2.8 2.1 93 chr3L 19138556 intron CG14082 - chr3L 19138602 intron CG14082 - chr3L 19138649 intron CG14082 - chr3L_8_19135001 chr3L_19135001 RAL-73 763 chr3L 19202468 19202492 chr3L 19202786 19202810 6 318 2.0 3.5 2.8 1.6 342 chr3L 19202468 intron fz2 - chr3L 19202639 intron fz2 - chr3L 19202810 intron fz2 - chr3L_6_19200001 chr3L_19200001 RAL-73 764 chr3L 19208056 19208092 chr3L 19209430 19209466 Doc 14 1374 1.5 2.0 1.8 5.0 1410 chr3L 19208056 intron fz2 - chr3L 19208761 intron fz2 - chr3L 19209466 intron fz2 - chr3L_14_19205001 chr3L_19205001 RAL-73 765 chr3L 19269817 19269844 chr3L 19270021 19270048 6 204 2.0 2.0 2.0 2.0 231 chr3L 19269817 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-73 766 chr3L 19417799 19417834 chr3L 19417879 19417914 6 80 3.0 0.5 1.8 2.1 115 chr3L 19417799 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417914 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-73 767 chr3L 19426754 19426778 chr3L 19426832 19426856 11 77 3.0 4.0 3.5 2.4 102 chr3L 19426754 intergenic not near genes chr3L 19426805 intergenic not near genes chr3L 19426856 intergenic not near genes chr3L_11_19425001 chr3L_19425001 RAL-73 768 chr3L 19933539 19933557 chr3L 19934361 19934377 4 822 3.5 3.0 3.2 1.0 838 chr3L 19933539 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934377 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-73 769 chr3L 20257347 20257361 chr3L 20258467 20258481 pogo 6 1120 1.0 2.5 1.8 2.1 1134 chr3L 20257347 intron rdgC + chr3L 20257914 intron rdgC + chr3L 20258481 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-73 770 chr3L 20315658 20315677 chr3L 20315738 20315757 6 80 0.0 2.0 1.0 3.0 99 chr3L 20315658 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315708 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315757 3` UTR,intron alphaSnap +,CR43875 - chr3L_6_20315001 chr3L_20315001 RAL-73 771 chr3L 20405580 20405609 chr3L 20405664 20405693 6 83 1.0 4.0 2.5 1.7 113 chr3L 20405580 intergenic not near genes chr3L 20405636 intergenic not near genes chr3L 20405693 intergenic not near genes chr3L_6_20405001 chr3L_20405001 RAL-73 772 chr3L 20487663 20487674 chr3L 20488114 20488125 INE-1 4 451 4.5 2.0 3.2 1.0 462 chr3L 20487663 intron ZnT77C - chr3L 20487894 intron ZnT77C - chr3L 20488125 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-73 773 chr3L 20565221 20565245 chr3L 20565312 20565338 4 92 2.0 1.5 1.8 1.4 117 chr3L 20565221 intergenic not near genes chr3L 20565280 intergenic not near genes chr3L 20565338 intergenic not near genes chr3L_4_20565001 chr3L_20565001 RAL-73 774 chr3L 20710766 20710792 chr3L 20710843 20710869 5 77 0.5 3.5 2.0 1.7 103 chr3L 20710766 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710869 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-73 775 chr3L 20913748 20913782 chr3L 20913830 20913864 13 82 3.0 3.5 3.2 3.1 116 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_13_20910001 chr3L_20910001 RAL-73 776 chr3L 21014916 21014944 chr3L 21023397 21023424 Tirant 12 8476 6.0 3.5 4.8 2.1 8508 chr3L 21014916 intron skd - chr3L 21019170 intron skd - chr3L 21023424 intron skd - chr3L_12_21015001 chr3L_21015001 RAL-73 777 chr3L 21151864 21151881 chr3L 21156948 21156965 flea 4 5084 4.5 1.0 2.8 1.1 5101 chr3L 21151864 intron Ac78C - chr3L 21154414 intron Ac78C - chr3L 21156965 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-73 778 chr3L 21160965 21160993 chr3L 21161061 21161089 5 96 4.0 1.5 2.8 1.3 124 chr3L 21160965 5` UTR Ac78C - chr3L 21161027 intron Ac78C - chr3L 21161089 intron Ac78C - chr3L_5_21160001 chr3L_21160001 RAL-73 779 chr3L 21243750 21243767 chr3L 21251313 21251330 412 9 7562 3.5 5.0 4.2 1.7 7580 chr3L 21243750 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_9_21245001 chr3L_21245001 RAL-73 780 chr3L 21498832 21498866 chr3L 21500468 21500502 1360 12 1635 5.0 2.5 3.8 2.5 1670 chr3L 21498832 intron Glg1 - chr3L 21499667 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_12_21495001 chr3L_21495001 RAL-73 781 chr3L 21563389 21563415 chr3L 21563739 21563764 4 350 0.0 1.5 0.8 2.2 375 chr3L 21563389 intergenic not near genes chr3L 21563576 intergenic not near genes chr3L 21563764 intergenic not near genes chr3L_4_21560001 chr3L_21560001 RAL-73 782 chr3L 21639202 21639222 chr3L 21639281 21639301 5 79 1.5 1.0 1.2 2.3 99 chr3L 21639202 intergenic CG32444 +,CG32445 + chr3L 21639252 intergenic CG32445 +,CG32444 + chr3L 21639301 intergenic CG32445 +,CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-73 783 chr3L 21656995 21657029 chr3L 21657087 21657122 9 93 2.0 1.0 1.5 3.6 127 chr3L 21656995 intron CG43980 + chr3L 21657058 intron CG43980 + chr3L 21657122 intron CG43980 + chr3L_9_21655001 chr3L_21655001 RAL-73 784 chr3L 21736357 21736372 chr3L 21736551 21736551 4 194 0.0 1.0 0.5 2.7 194 chr3L 21736357 intergenic CR43888 + chr3L 21736454 intergenic CR43888 + chr3L 21736551 intergenic CR43888 + chr3L_4_21735001 chr3L_21735001 RAL-73 785 chr3L 21749321 21749343 chr3L 21754481 21754503 Doc 6 5160 2.0 5.0 3.5 1.3 5182 chr3L 21749321 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754503 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-73 786 chr3L 21849510 21849533 chr3L 21849592 21849610 4 81 2.0 1.5 1.8 1.4 100 chr3L 21849510 intron mub + chr3L 21849560 intron mub + chr3L 21849610 intron mub + chr3L_4_21845001 chr3L_21845001 RAL-73 787 chr3L 21901025 21901045 chr3L 21901118 21901138 7 93 2.0 8.0 5.0 1.2 113 chr3L 21901025 intron mub + chr3L 21901082 intron mub + chr3L 21901138 intron mub + chr3L_7_21900001 chr3L_21900001 RAL-73 788 chr3L 22016367 22016400 chr3L 22016481 22016514 6 115 2.0 1.5 1.8 2.1 147 chr3L 22016367 intergenic not near genes chr3L 22016440 intergenic not near genes chr3L 22016514 intergenic not near genes chr3L_6_22015001 chr3L_22015001 RAL-73 789 chr3L 22033689 22033715 chr3L 22033767 22033793 4 77 1.0 0.5 0.8 2.2 104 chr3L 22033689 intergenic not near genes chr3L 22033741 intergenic not near genes chr3L 22033793 intergenic not near genes chr3L_4_22030001 chr3L_22030001 RAL-73 790 chr3L 22166453 22166469 chr3L 22166531 22166547 5 78 2.5 2.0 2.2 1.6 94 chr3L 22166453 intron olf413 + chr3L 22166500 intron olf413 + chr3L 22166547 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-73 791 chr3L 22179097 22179114 chr3L 22179178 22179198 5 84 4.0 2.5 3.2 1.2 101 chr3L 22179097 intron olf413 + chr3L 22179148 intron olf413 + chr3L 22179198 intron olf413 + chr3L_5_22175001 chr3L_22175001 RAL-73 792 chr3L 22353019 22353049 chr3L 22353377 22353407 9 357 4.5 3.5 4.0 1.8 388 chr3L 22353019 intron Ten-m - chr3L 22353213 intron Ten-m - chr3L 22353407 intron Ten-m - chr3L_9_22350001 chr3L_22350001 RAL-73 793 chr3L 22411369 22411399 chr3L 22411446 22411467 5 72 3.0 4.5 3.8 1.0 98 chr3L 22411369 intergenic not near genes chr3L 22411418 intergenic not near genes chr3L 22411467 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-73 794 chr3L 22447212 22447225 chr3L 22447303 22447316 4 91 1.0 2.5 1.8 1.4 104 chr3L 22447212 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447316 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-73 795 chr3L 22555797 22555802 chr3L 22563238 22563240 blood 4 7442 1.0 1.0 1.0 2.0 7443 chr3L 22555797 intergenic not near genes chr3L 22559518 intergenic not near genes chr3L 22563240 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-73 796 chr3L 22577627 22577643 chr3L 22582415 22582431 Doc 9 4788 5.0 6.0 5.5 1.4 4804 chr3L 22577627 intergenic not near genes chr3L 22580029 intergenic not near genes chr3L 22582431 3` UTR CG14459 - chr3L_9_22580001 chr3L_22580001 RAL-73 797 chr3L 22617199 22617218 chr3L 22624650 22624670 blood 4 7452 1.5 3.0 2.2 1.2 7471 chr3L 22617199 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624670 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-73 798 chr3L 22630739 22630766 chr3L 22630818 22630844 12 78 2.5 3.0 2.8 3.2 105 chr3L 22630739 intron CG14459 - chr3L 22630792 intron CG14459 - chr3L 22630844 intron CG14459 - chr3L_12_22630001 chr3L_22630001 RAL-73 799 chr3L 22652320 22652352 chr3L 22652457 22652490 7 138 3.0 0.5 1.8 2.5 170 chr3L 22652320 exon CG33772 - chr3L 22652405 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_7_22650001 chr3L_22650001 RAL-73 800 chr3L 22865986 22866013 chr3L 22867119 22867146 Doc 4 1133 0.5 0.0 0.2 3.3 1160 chr3L 22865986 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-73 801 chr3L 23875530 23875558 chr3L 23875611 23875613 9 78 2.5 5.5 4.0 1.8 83 chr3L 23875530 intron CG40470 - chr3L 23875572 intron CG40470 - chr3L 23875613 intron CG40470 - chr3L_9_23875001 chr3L_23875001 RAL-73 802 chr3L 24168786 24168820 chr3L 24176114 24176148 ZAM 9 7326 3.0 3.0 3.0 2.2 7362 chr3L 24168786 intron Snap25 + chr3L 24172467 intron Snap25 + chr3L 24176148 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-73 803 chr3L 24206084 24206108 chr3L 24206398 24206422 flea 6 314 0.0 1.5 0.8 3.3 338 chr3L 24206084 intron Snap25 + chr3L 24206253 intron Snap25 + chr3L 24206422 intron Snap25 + chr3L_6_24205001 chr3L_24205001 RAL-73 804 chr3L 24750856 24750885 chr3L 24751164 24751193 6 308 1.0 3.0 2.0 2.0 337 chr3L 24750856 intron scro + chr3L 24751024 intron scro + chr3L 24751193 intron scro + chr3L_6_24750001 chr3L_24750001 RAL-73 805 chr3L 25331640 25331651 chr3L 25331731 25331742 4 90 4.5 3.5 4.0 0.8 102 chr3L 25331640 intergenic not near genes chr3L 25331691 intergenic not near genes chr3L 25331742 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-73 806 chr3L 25975450 25975457 chr3L 25975534 25975542 5 84 1.5 0.5 1.0 2.5 92 chr3L 25975450 intron CG40178 - chr3L 25975496 intron CG40178 - chr3L 25975542 intron CG40178 - chr3L_5_25975001 chr3L_25975001 RAL-73 807 chr3L 27390688 27390712 chr3L 27390767 27390790 7 79 24.5 24.5 24.5 0.3 102 chr3L 27390688 intron Dbp80 + chr3L 27390739 intron Dbp80 + chr3L 27390790 intron Dbp80 + chr3L_7_27390001 chr3L_27390001 RAL-73 808 chr3R 1521167 1521169 chr3R 1521243 1521255 4 84 13.5 11.5 12.5 0.3 88 chr3R 1521167 intergenic not near genes chr3R 1521211 intergenic not near genes chr3R 1521255 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-73 809 chr3R 1521170 1521183 chr3R 1521240 1521270 15 84 13.5 11.0 12.2 1.1 100 chr3R 1521170 intergenic not near genes chr3R 1521220 intergenic not near genes chr3R 1521270 intergenic not near genes chr3R_15_1520001 chr3R_1520001 RAL-73 810 chr3R 1866437 1866444 chr3R 1866797 1866804 4 360 12.0 6.0 9.0 0.4 367 chr3R 1866437 intron CG42623 + chr3R 1866620 intron CG42623 + chr3R 1866804 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-73 811 chr3R 2534136 2534164 chr3R 2541705 2541732 10 7568 12.0 15.5 13.8 0.7 7596 chr3R 2534136 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_10_2535001 chr3R_2535001 RAL-73 812 chr3R 3178702 3178713 chr3R 3595186 3595197 7 416484 4.5 8.5 6.5 0.9 416495 chr3R 3178702 intron CG42617 - chr3R 3386950 intergenic not near genes chr3R 3595197 intergenic not near genes chr3R_7_3385001 chr3R_3385001 RAL-73 813 chr3R 4105039 4105069 chr3R 4110243 4110273 copia 5 5204 0.0 0.5 0.2 4.2 5234 chr3R 4105039 intergenic not near genes chr3R 4107656 intergenic not near genes chr3R 4110273 intergenic not near genes chr3R_5_4105001 chr3R_4105001 RAL-73 814 chr3R 4291722 4291753 chr3R 4291800 4291830 13 76 2.5 4.0 3.2 3.1 108 chr3R 4291722 intron cpx + chr3R 4291776 intron cpx + chr3R 4291830 intron cpx + chr3R_13_4290001 chr3R_4290001 RAL-73 815 chr3R 4463400 4463419 chr3R 4463476 4463495 5 76 3.5 1.0 2.2 1.6 95 chr3R 4463400 intergenic not near genes chr3R 4463448 intergenic not near genes chr3R 4463495 intergenic not near genes chr3R_5_4460001 chr3R_4460001 RAL-73 816 chr3R 4625679 4625706 chr3R 4625763 4625788 10 80 4.5 2.5 3.5 2.2 109 chr3R 4625679 intron 5-HT2A + chr3R 4625734 intron 5-HT2A + chr3R 4625788 intron 5-HT2A + chr3R_10_4625001 chr3R_4625001 RAL-73 817 chr3R 4682753 4682780 chr3R 4682831 4682858 4 78 3.0 1.0 2.0 1.3 105 chr3R 4682753 intron CG43427 + chr3R 4682806 intron CG43427 + chr3R 4682858 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-73 818 chr3R 4683183 4683209 chr3R 4684942 4684965 S-element 6 1758 3.0 3.0 3.0 1.5 1782 chr3R 4683183 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684965 intron CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-73 819 chr3R 4753239 4753273 chr3R 4757542 4757575 F-element 8 4303 1.5 6.0 3.8 1.7 4336 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755407 intron,intron atms +,CG44098 - chr3R 4757575 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-73 820 chr3R 4796116 4796147 chr3R 4796239 4796270 13 123 3.5 1.0 2.2 4.1 154 chr3R 4796116 intron ctrip - chr3R 4796193 intron ctrip - chr3R 4796270 intron ctrip - chr3R_13_4795001 chr3R_4795001 RAL-73 821 chr3R 4861570 4861598 chr3R 4861648 4861679 18 79 5.0 4.0 4.5 3.3 109 chr3R 4861570 intron opa + chr3R 4861624 intron opa + chr3R 4861679 intron opa + chr3R_18_4860001 chr3R_4860001 RAL-73 822 chr3R 4887489 4887511 chr3R 4894866 4894888 rover 6 7377 2.5 4.0 3.2 1.4 7399 chr3R 4887489 intergenic not near genes chr3R 4891188 intergenic not near genes chr3R 4894888 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-73 823 chr3R 4922347 4922361 chr3R 4922426 4922440 7 79 1.0 3.5 2.2 2.2 93 chr3R 4922347 intron Cdep + chr3R 4922394 intron Cdep + chr3R 4922440 intron Cdep + chr3R_7_4920001 chr3R_4920001 RAL-73 824 chr3R 4966006 4966035 chr3R 4966098 4966126 8 92 1.0 1.5 1.2 3.6 120 chr3R 4966006 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966126 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-73 825 chr3R 5338396 5338427 chr3R 5343573 5343604 Rt1c 5 5177 2.0 7.5 4.8 0.9 5208 chr3R 5338396 intron mtd - chr3R 5341000 intron mtd - chr3R 5343604 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-73 826 chr3R 5385976 5386007 chr3R 5386146 5386178 8 171 1.5 2.5 2.0 2.7 202 chr3R 5385976 intron kkv - chr3R 5386077 intron kkv - chr3R 5386178 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-73 827 chr3R 5515136 5515164 chr3R 5515212 5515241 10 77 1.5 2.0 1.8 3.6 105 chr3R 5515136 intron Nmdar1 - chr3R 5515188 intron Nmdar1 - chr3R 5515241 intron Nmdar1 - chr3R_10_5515001 chr3R_5515001 RAL-73 828 chr3R 5746022 5746035 chr3R 5746263 5746276 pogo 4 241 1.0 4.0 2.5 1.1 254 chr3R 5746022 3` UTR Madm + chr3R 5746149 3` UTR Madm + chr3R 5746276 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-73 829 chr3R 5762893 5762918 chr3R 5762978 5763003 7 85 1.0 5.0 3.0 1.8 110 chr3R 5762893 intron CG2082 - chr3R 5762948 intron CG2082 - chr3R 5763003 intron CG2082 - chr3R_7_5760001 chr3R_5760001 RAL-73 830 chr3R 5769247 5769264 chr3R 5769345 5769362 5 98 1.5 2.5 2.0 1.7 115 chr3R 5769247 intron CG2082 - chr3R 5769304 intron CG2082 - chr3R 5769362 intron CG2082 - chr3R_5_5765001 chr3R_5765001 RAL-73 831 chr3R 5809112 5809145 chr3R 5809353 5809386 pogo 9 241 2.0 3.0 2.5 2.6 274 chr3R 5809112 3` UTR CG11000 + chr3R 5809249 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_9_5805001 chr3R_5805001 RAL-73 832 chr3R 5822377 5822400 chr3R 5823544 5823567 1360 5 1167 3.0 2.0 2.5 1.4 1190 chr3R 5822377 3` UTR CG2023 - chr3R 5822972 3` UTR CG2023 - chr3R 5823567 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-73 833 chr3R 5840821 5840851 chr3R 5840910 5840940 11 89 3.0 6.0 4.5 2.0 119 chr3R 5840821 intergenic CG1213 + chr3R 5840880 intergenic CG1213 + chr3R 5840940 intergenic CG1213 + chr3R_11_5840001 chr3R_5840001 RAL-73 834 chr3R 5927560 5927587 chr3R 5927800 5927827 pogo 7 240 1.5 1.0 1.2 3.2 267 chr3R 5927560 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927827 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-73 835 chr3R 5935360 5935389 chr3R 5935436 5935465 7 76 1.5 1.0 1.2 3.2 105 chr3R 5935360 intron CG34113 - chr3R 5935412 intron CG34113 - chr3R 5935465 intron CG34113 - chr3R_7_5935001 chr3R_5935001 RAL-73 836 chr3R 5943404 5943415 chr3R 5943483 5943494 5 79 3.0 1.5 2.2 1.6 90 chr3R 5943404 intron CG34113 - chr3R 5943449 intron CG34113 - chr3R 5943494 intron CG34113 - chr3R_5_5940001 chr3R_5940001 RAL-73 837 chr3R 6015963 6015994 chr3R 6024444 6024474 Tirant 8 8478 1.0 2.5 1.8 2.9 8511 chr3R 6015963 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024474 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-73 838 chr3R 6121022 6121056 chr3R 6121098 6121132 9 76 2.0 2.5 2.2 2.8 110 chr3R 6121022 intergenic not near genes chr3R 6121077 intergenic not near genes chr3R 6121132 intergenic not near genes chr3R_9_6120001 chr3R_6120001 RAL-73 839 chr3R 6158512 6158522 chr3R 6167095 6167105 Tirant 5 8583 7.0 1.5 4.2 1.0 8593 chr3R 6158512 intergenic not near genes chr3R 6162808 intergenic not near genes chr3R 6167105 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-73 840 chr3R 6158524 6158540 chr3R 6167090 6167123 Tirant 10 8579 5.5 1.5 3.5 2.2 8599 chr3R 6158524 intergenic not near genes chr3R 6162824 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-73 841 chr3R 6428812 6428839 chr3R 6428914 6428941 5 102 0.0 0.0 0.0 5.0 129 chr3R 6428812 intron gpp + chr3R 6428876 intron gpp + chr3R 6428941 intron gpp + chr3R_5_6425001 chr3R_6425001 RAL-73 842 chr3R 6476998 6477018 chr3R 6477079 6477099 4 81 1.0 1.5 1.2 1.8 101 chr3R 6476998 intergenic not near genes chr3R 6477048 intergenic not near genes chr3R 6477099 intergenic not near genes chr3R_4_6475001 chr3R_6475001 RAL-73 843 chr3R 6643232 6643264 chr3R 6643327 6643359 9 95 2.0 1.0 1.5 3.6 127 chr3R 6643232 3` UTR,exon CG31286 +,CG1315 - chr3R 6643296 3` UTR,intron CG31286 +,CG1315 - chr3R 6643359 intron CG1315 - chr3R_9_6640001 chr3R_6640001 RAL-73 844 chr3R 6737501 6737526 chr3R 6739288 6739313 Doc 11 1786 5.5 3.5 4.5 2.0 1812 chr3R 6737501 intron pb - chr3R 6738407 intron pb - chr3R 6739313 intron pb - chr3R_11_6735001 chr3R_6735001 RAL-73 845 chr3R 6751734 6751741 chr3R 6752110 6752115 5 376 11.0 5.5 8.2 0.5 381 chr3R 6751734 intergenic not near genes chr3R 6751924 intergenic not near genes chr3R 6752115 intergenic not near genes chr3R_5_6750001 chr3R_6750001 RAL-73 846 chr3R 6862220 6862240 chr3R 6862307 6862327 5 86 1.5 0.5 1.0 2.5 107 chr3R 6862220 intergenic not near genes chr3R 6862274 intergenic not near genes chr3R 6862327 intergenic not near genes chr3R_5_6860001 chr3R_6860001 RAL-73 847 chr3R 6891237 6891357 chr3R 6891313 6891555 4 168 2.5 0.5 1.5 1.6 318 chr3R 6891237 intergenic not near genes chr3R 6891396 intergenic not near genes chr3R 6891555 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-73 848 chr3R 7026859 7026884 chr3R 7026945 7026969 11 85 2.5 1.5 2.0 3.7 110 chr3R 7026859 intergenic not near genes chr3R 7026914 intergenic not near genes chr3R 7026969 intergenic not near genes chr3R_11_7025001 chr3R_7025001 RAL-73 849 chr3R 7103287 7103313 chr3R 7103363 7103389 9 76 2.5 3.0 2.8 2.4 102 chr3R 7103287 intron Alh - chr3R 7103338 intron Alh - chr3R 7103389 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-73 850 chr3R 7106764 7106789 chr3R 7107056 7107071 7 289 0.5 2.0 1.2 3.2 307 chr3R 7106764 intron Alh - chr3R 7106918 intron Alh - chr3R 7107071 intron Alh - chr3R_7_7105001 chr3R_7105001 RAL-73 851 chr3R 7302298 7302324 chr3R 7302390 7302414 4 92 1.0 3.0 2.0 1.3 116 chr3R 7302298 intron rn - chr3R 7302356 intron rn - chr3R 7302414 intron rn - chr3R_4_7300001 chr3R_7300001 RAL-73 852 chr3R 7574621 7574647 chr3R 7574701 7574729 9 81 1.0 1.5 1.2 4.1 108 chr3R 7574621 intron CG34127 - chr3R 7574675 intron CG34127 - chr3R 7574729 intron CG34127 - chr3R_9_7570001 chr3R_7570001 RAL-73 853 chr3R 7617993 7618003 chr3R 7618085 7618095 5 92 1.0 0.0 0.5 3.3 102 chr3R 7617993 intron CG34127 - chr3R 7618044 intron CG34127 - chr3R 7618095 intron CG34127 - chr3R_5_7615001 chr3R_7615001 RAL-73 854 chr3R 7729476 7729498 chr3R 7737414 7737436 Stalker2 5 7938 0.5 2.0 1.2 2.3 7960 chr3R 7729476 intergenic not near genes chr3R 7733456 intergenic not near genes chr3R 7737436 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-73 855 chr3R 7775913 7775947 chr3R 7775994 7776026 4 80 2.0 0.5 1.2 1.8 113 chr3R 7775913 intergenic not near genes chr3R 7775970 intergenic not near genes chr3R 7776026 intergenic not near genes chr3R_4_7775001 chr3R_7775001 RAL-73 856 chr3R 7966376 7966404 chr3R 7966840 7966872 10 467 6.5 3.5 5.0 1.7 496 chr3R 7966376 intron dsx - chr3R 7966624 5` UTR dsx - chr3R 7966872 5` UTR dsx - chr3R_10_7965001 chr3R_7965001 RAL-73 857 chr3R 7987195 7987214 chr3R 7987284 7987303 4 89 2.0 0.5 1.2 1.8 108 chr3R 7987195 intron CG2781 - chr3R 7987249 intron CG2781 - chr3R 7987303 intron CG2781 - chr3R_4_7985001 chr3R_7985001 RAL-73 858 chr3R 8090271 8090295 chr3R 8090448 8090472 4 177 2.5 2.0 2.2 1.2 201 chr3R 8090271 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090472 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-73 859 chr3R 8101768 8101789 chr3R 8104851 8104873 G2 8 3084 1.0 0.0 0.5 5.3 3105 chr3R 8101768 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104873 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-73 860 chr3R 8107386 8107418 chr3R 8107520 8107552 5 134 0.5 0.5 0.5 3.3 166 chr3R 8107386 intron puc + chr3R 8107469 intron puc + chr3R 8107552 intron puc + chr3R_5_8105001 chr3R_8105001 RAL-73 861 chr3R 8339241 8339247 chr3R 21907534 21907536 25 13568289 9.5 17.0 13.2 1.8 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_25_15120001 chr3R_15120001 RAL-73 862 chr3R 8403008 8403038 chr3R 8412174 8412204 roo 11 9166 2.0 4.5 3.2 2.6 9196 chr3R 8403008 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-73 863 chr3R 8426194 8426227 chr3R 8426274 8426312 18 83 4.5 2.5 3.5 4.0 118 chr3R 8426194 intron CG45263 - chr3R 8426253 intron CG45263 - chr3R 8426312 intron CG45263 - chr3R_18_8425001 chr3R_8425001 RAL-73 864 chr3R 8570477 8570508 chr3R 8575113 8575144 HMS-Beagle 4 4636 2.0 1.0 1.5 1.6 4667 chr3R 8570477 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575144 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-73 865 chr3R 8707358 8707385 chr3R 8709799 8709826 jockey 6 2440 5.5 3.5 4.5 1.1 2468 chr3R 8707358 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-73 866 chr3R 8860273 8860304 chr3R 8860366 8860397 9 91 2.5 3.0 2.8 2.4 124 chr3R 8860273 intron pyd - chr3R 8860335 intron pyd - chr3R 8860397 intron pyd - chr3R_9_8860001 chr3R_8860001 RAL-73 867 chr3R 9095696 9095724 chr3R 9096016 9096044 6 319 1.5 1.0 1.2 2.7 348 chr3R 9095696 intron pum - chr3R 9095870 intron pum - chr3R 9096044 intron pum - chr3R_6_9095001 chr3R_9095001 RAL-73 868 chr3R 9141161 9141183 chr3R 9141250 9141270 4 88 1.0 1.0 1.0 2.0 109 chr3R 9141161 intron pum - chr3R 9141216 intron pum - chr3R 9141270 intron pum - chr3R_4_9140001 chr3R_9140001 RAL-73 869 chr3R 9201598 9201623 chr3R 9201673 9201703 12 75 2.5 2.0 2.2 3.8 105 chr3R 9201598 intron pum - chr3R 9201650 intron pum - chr3R 9201703 intron pum - chr3R_12_9200001 chr3R_9200001 RAL-73 870 chr3R 9319573 9319603 chr3R 9320008 9320038 jockey 7 435 2.0 2.5 2.2 2.2 465 chr3R 9319573 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-73 871 chr3R 9382817 9382848 chr3R 9382940 9382973 5 125 1.0 1.0 1.0 2.5 156 chr3R 9382817 intron FER - chr3R 9382895 intron FER - chr3R 9382973 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-73 872 chr3R 9526587 9526610 chr3R 9526669 9526692 4 82 2.5 1.0 1.8 1.4 105 chr3R 9526587 exon CG8176 + chr3R 9526640 3` UTR CG8176 + chr3R 9526692 3` UTR CG8176 + chr3R_4_9525001 chr3R_9525001 RAL-73 873 chr3R 9620956 9620956 chr3R 21907534 21907536 9 12286580 6.5 17.0 11.8 0.7 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_9_15760001 chr3R_15760001 RAL-73 874 chr3R 9836874 9836893 chr3R 9836962 9836981 8 88 4.0 6.5 5.2 1.3 107 chr3R 9836874 intron Teh1 - chr3R 9836928 intron Teh1 - chr3R 9836981 intron Teh1 - chr3R_8_9835001 chr3R_9835001 RAL-73 875 chr3R 10073773 10073804 chr3R 10073882 10073913 6 109 1.5 1.0 1.2 2.7 140 chr3R 10073773 intergenic nerfin-2 +,CG5361 - chr3R 10073843 3` UTR CG5361 - chr3R 10073913 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-73 876 chr3R 10174121 10174146 chr3R 10174202 10174228 6 81 2.5 2.5 2.5 1.7 107 chr3R 10174121 intron CG12814 - chr3R 10174174 intron CG12814 - chr3R 10174228 intron CG12814 - chr3R_6_10170001 chr3R_10170001 RAL-73 877 chr3R 10231783 10231812 chr3R 10237360 10237389 mdg3 8 5577 0.0 3.0 1.5 3.2 5606 chr3R 10231783 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237389 intron CG42795 + chr3R_8_10230001 chr3R_10230001 RAL-73 878 chr3R 10351424 10351447 chr3R 10351503 10351526 4 79 2.0 1.0 1.5 1.6 102 chr3R 10351424 intron jumu + chr3R 10351475 intron jumu + chr3R 10351526 intron jumu + chr3R_4_10350001 chr3R_10350001 RAL-73 879 chr3R 10723764 10723792 chr3R 10723856 10723884 6 92 3.5 0.0 1.8 2.1 120 chr3R 10723764 intergenic not near genes chr3R 10723824 intergenic not near genes chr3R 10723884 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-73 880 chr3R 10727643 10727679 chr3R 10727723 10727759 15 79 3.0 5.5 4.2 2.9 116 chr3R 10727643 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_15_10725001 chr3R_10725001 RAL-73 881 chr3R 10745425 10745454 chr3R 10745511 10745541 6 86 2.0 2.0 2.0 2.0 116 chr3R 10745425 intron TkR86C - chr3R 10745483 intron TkR86C - chr3R 10745541 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-73 882 chr3R 10919684 10919716 chr3R 10919762 10919794 7 75 2.0 1.5 1.8 2.5 110 chr3R 10919684 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-73 883 chr3R 10920053 10920068 chr3R 10920131 10920146 4 78 0.5 6.0 3.2 1.0 93 chr3R 10920053 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920146 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-73 884 chr3R 10957870 10957885 chr3R 10963259 10963274 Rt1c 5 5388 4.5 7.0 5.8 0.7 5404 chr3R 10957870 intergenic not near genes chr3R 10960572 intergenic not near genes chr3R 10963274 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-73 885 chr3R 11151133 11151141 chr3R 11151325 11151336 6 194 2.0 4.5 3.2 1.4 203 chr3R 11151133 3` UTR Ugt86Di - chr3R 11151234 3` UTR Ugt86Di - chr3R 11151336 3` UTR Ugt86Di - chr3R_6_11150001 chr3R_11150001 RAL-73 886 chr3R 11197987 11198013 chr3R 11198085 11198106 5 97 4.0 3.5 3.8 1.0 119 chr3R 11197987 intron cu + chr3R 11198046 intron cu + chr3R 11198106 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-73 887 chr3R 11307191 11307222 chr3R 11307278 11307309 15 86 1.5 3.5 2.5 4.3 118 chr3R 11307191 intergenic not near genes chr3R 11307250 intergenic not near genes chr3R 11307309 intergenic not near genes chr3R_15_11305001 chr3R_11305001 RAL-73 888 chr3R 11342541 11342560 chr3R 11342617 11342636 4 76 4.5 1.5 3.0 1.0 95 chr3R 11342541 intron pros + chr3R 11342588 intron pros + chr3R 11342636 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-73 889 chr3R 11404956 11404964 chr3R 11405023 11405044 4 77 2.0 1.0 1.5 1.6 88 chr3R 11404956 3` UTR pros + chr3R 11405000 3` UTR pros + chr3R 11405044 3` UTR pros + chr3R_4_11400001 chr3R_11400001 RAL-73 890 chr3R 11442338 11442363 chr3R 11442523 11442548 5 185 1.5 4.5 3.0 1.2 210 chr3R 11442338 intron,intron sals -,CG17230 + chr3R 11442443 intron,intron sals -,CG17230 + chr3R 11442548 intron,intron sals -,CG17230 + chr3R_5_11440001 chr3R_11440001 RAL-73 891 chr3R 11471228 11471234 chr3R 15095973 15095979 4 3624745 5.0 7.5 6.2 0.6 3624751 chr3R 11471228 intergenic not near genes chr3R 13283604 exon CG8630 + chr3R 15095979 3` UTR CG42788 - chr3R_4_13280001 chr3R_13280001 RAL-73 892 chr3R 11664790 11664822 chr3R 11664882 11664914 10 91 1.0 0.0 0.5 6.7 124 chr3R 11664790 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664914 intron CG42327 + chr3R_10_11660001 chr3R_11660001 RAL-73 893 chr3R 11734161 11734190 chr3R 11734279 11734309 4 119 1.0 0.5 0.8 2.2 148 chr3R 11734161 intergenic not near genes chr3R 11734235 intergenic not near genes chr3R 11734309 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-73 894 chr3R 11740434 11740468 chr3R 11743541 11743575 16 3107 36.5 44.5 40.5 0.4 3141 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_16_11740001 chr3R_11740001 RAL-73 895 chr3R 11841059 11841090 chr3R 11846250 11846273 BS 7 5189 7.0 3.0 5.0 1.2 5214 chr3R 11841059 intron CG6959 - chr3R 11843666 intron CG6959 - chr3R 11846273 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-73 896 chr3R 11920975 11921000 chr3R 11921071 11921097 8 96 3.5 4.0 3.8 1.7 122 chr3R 11920975 intron Cad87A - chr3R 11921036 intron Cad87A - chr3R 11921097 intron Cad87A - chr3R_8_11920001 chr3R_11920001 RAL-73 897 chr3R 12029927 12029950 chr3R 12030014 12030037 5 87 2.0 0.5 1.2 2.3 110 chr3R 12029927 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029982 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030037 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_5_12025001 chr3R_12025001 RAL-73 898 chr3R 12081997 12082026 chr3R 12082073 12082102 6 76 3.5 1.5 2.5 1.7 105 chr3R 12081997 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082102 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-73 899 chr3R 12111901 12111916 chr3R 12111977 12111992 7 76 0.0 1.5 0.8 3.9 91 chr3R 12111901 intergenic dpr17 + chr3R 12111946 intergenic not near genes chr3R 12111992 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-73 900 chr3R 12183181 12183203 chr3R 12183267 12183289 6 86 2.5 1.5 2.0 2.0 108 chr3R 12183181 intergenic not near genes chr3R 12183235 intergenic not near genes chr3R 12183289 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-73 901 chr3R 12597197 12597206 chr3R 12597325 12597331 5 127 2.5 3.5 3.0 1.2 134 chr3R 12597197 intergenic not near genes chr3R 12597264 intergenic not near genes chr3R 12597331 intergenic not near genes chr3R_5_12595001 chr3R_12595001 RAL-73 902 chr3R 12599385 12599405 chr3R 12599468 12599487 4 83 2.0 3.0 2.5 1.1 102 chr3R 12599385 intergenic not near genes chr3R 12599436 intergenic not near genes chr3R 12599487 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-73 903 chr3R 12685402 12685432 chr3R 12685520 12685550 9 118 3.5 6.5 5.0 1.5 148 chr3R 12685402 intron kar - chr3R 12685476 intron kar - chr3R 12685550 intron kar - chr3R_9_12685001 chr3R_12685001 RAL-73 904 chr3R 12733474 12733509 chr3R 12733551 12733584 11 74 1.5 3.5 2.5 3.1 110 chr3R 12733474 intergenic not near genes chr3R 12733529 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_11_12730001 chr3R_12730001 RAL-73 905 chr3R 12866492 12866504 chr3R 12866643 12866655 4 151 2.5 0.5 1.5 1.6 163 chr3R 12866492 intergenic not near genes chr3R 12866574 intergenic not near genes chr3R 12866655 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-73 906 chr3R 12920157 12920179 chr3R 12925356 12925382 copia 6 5202 3.5 1.5 2.5 1.7 5225 chr3R 12920157 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925382 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-73 907 chr3R 12974651 12974665 chr3R 12974856 12974870 5 205 2.0 3.5 2.8 1.3 219 chr3R 12974651 intron CG7381 - chr3R 12974760 intron CG7381 - chr3R 12974870 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-73 908 chr3R 13018146 13018179 chr3R 13018225 13018258 6 79 2.5 0.5 1.5 2.4 112 chr3R 13018146 intron CtBP + chr3R 13018202 intron CtBP + chr3R 13018258 intron CtBP + chr3R_6_13015001 chr3R_13015001 RAL-73 909 chr3R 13075371 13075388 chr3R 13075452 13075469 4 81 1.0 1.0 1.0 2.0 98 chr3R 13075371 intron sim + chr3R 13075420 intron sim + chr3R 13075469 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-73 910 chr3R 13143031 13143065 chr3R 13148608 13148642 mdg3 23 5576 4.0 1.5 2.8 6.1 5611 chr3R 13143031 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_23_13145001 chr3R_13145001 RAL-73 911 chr3R 13252264 13252295 chr3R 13252338 13252370 7 75 0.5 2.0 1.2 3.2 106 chr3R 13252264 intron Ace - chr3R 13252317 intron Ace - chr3R 13252370 intron Ace - chr3R_7_13250001 chr3R_13250001 RAL-73 912 chr3R 13274215 13274249 chr3R 13274294 13274328 12 79 1.5 3.0 2.2 3.8 113 chr3R 13274215 intergenic not near genes chr3R 13274272 intergenic not near genes chr3R 13274328 intergenic not near genes chr3R_12_13270001 chr3R_13270001 RAL-73 913 chr3R 13319154 13319183 chr3R 13319357 13319386 7 203 2.0 3.5 2.8 1.8 232 chr3R 13319154 exon CG45080 - chr3R 13319270 5` UTR CG45080 - chr3R 13319386 intergenic CG45080 - chr3R_7_13315001 chr3R_13315001 RAL-73 914 chr3R 13435410 13435420 chr3R 13435585 13435595 5 175 0.0 1.0 0.5 3.3 185 chr3R 13435410 intergenic yrt - chr3R 13435502 intergenic not near genes chr3R 13435595 intergenic not near genes chr3R_5_13435001 chr3R_13435001 RAL-73 915 chr3R 13571535 13571562 chr3R 13571611 13571639 5 77 2.5 1.5 2.0 1.7 104 chr3R 13571535 intergenic not near genes chr3R 13571587 intergenic not near genes chr3R 13571639 intergenic not near genes chr3R_5_13570001 chr3R_13570001 RAL-73 916 chr3R 13603055 13603075 chr3R 13603145 13603166 9 91 1.5 0.0 0.8 5.0 111 chr3R 13603055 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_9_13600001 chr3R_13600001 RAL-73 917 chr3R 13659722 13659847 chr3R 13659828 13659936 4 102 0.0 0.0 0.0 4.0 214 chr3R 13659722 intron Hrb87F - chr3R 13659829 intron Hrb87F - chr3R 13659936 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-73 918 chr3R 13672949 13672965 chr3R 13673025 13673043 4 78 1.0 1.0 1.0 2.0 94 chr3R 13672949 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673043 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-73 919 chr3R 13693028 13693028 chr3R 21907534 21907536 8 8214507 3.0 17.0 10.0 0.7 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-73 920 chr3R 13765276 13765284 chr3R 13765360 13765368 5 84 0.5 5.0 2.8 1.3 92 chr3R 13765276 intergenic CG9312 + chr3R 13765322 intergenic CG9312 + chr3R 13765368 intergenic CG9312 + chr3R_5_13765001 chr3R_13765001 RAL-73 921 chr3R 13782062 13782089 chr3R 13782142 13782167 8 80 2.0 3.5 2.8 2.1 105 chr3R 13782062 exon CG9286 + chr3R 13782114 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_8_13780001 chr3R_13780001 RAL-73 922 chr3R 13863682 13863716 chr3R 13863770 13863804 8 88 1.5 1.0 1.2 3.6 122 chr3R 13863682 intergenic not near genes chr3R 13863743 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-73 923 chr3R 14049033 14049290 chr3R 14049113 14049350 15 77 2.5 2.5 2.5 4.3 317 chr3R 14049033 intergenic not near genes chr3R 14049192 intergenic not near genes chr3R 14049350 intergenic not near genes chr3R_15_14045001 chr3R_14045001 RAL-73 924 chr3R 14364066 14364091 chr3R 14364142 14364167 5 75 1.5 4.5 3.0 1.2 101 chr3R 14364066 intron NK7.1 - chr3R 14364116 intron NK7.1 - chr3R 14364167 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-73 925 chr3R 14499874 14499900 chr3R 14499955 14499981 10 80 2.5 2.0 2.2 3.1 107 chr3R 14499874 intron CR44177 + chr3R 14499928 intron CR44177 + chr3R 14499981 intron CR44177 + chr3R_10_14495001 chr3R_14495001 RAL-73 926 chr3R 14534740 14534753 chr3R 14534822 14534835 4 82 1.5 4.5 3.0 1.0 95 chr3R 14534740 intron Pde6 - chr3R 14534788 intron Pde6 - chr3R 14534835 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-73 927 chr3R 14535595 14535622 chr3R 14535673 14535700 7 76 1.0 3.5 2.2 2.2 105 chr3R 14535595 intron Pde6 - chr3R 14535648 intron Pde6 - chr3R 14535700 intron Pde6 - chr3R_7_14535001 chr3R_14535001 RAL-73 928 chr3R 14578552 14578568 chr3R 14578629 14578645 4 77 1.5 0.0 0.8 2.2 93 chr3R 14578552 intron stumps + chr3R 14578598 intron stumps + chr3R 14578645 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-73 929 chr3R 14838733 14838757 chr3R 14838837 14838862 5 105 1.5 1.0 1.2 2.3 129 chr3R 14838733 intron btsz - chr3R 14838798 intron btsz - chr3R 14838862 intron btsz - chr3R_5_14835001 chr3R_14835001 RAL-73 930 chr3R 14857699 14857722 chr3R 14857813 14857835 12 113 3.5 3.0 3.2 2.9 136 chr3R 14857699 intron btsz - chr3R 14857767 intron btsz - chr3R 14857835 intron btsz - chr3R_12_14855001 chr3R_14855001 RAL-73 931 chr3R 14993446 14993474 chr3R 14994239 14994267 7 793 2.0 5.0 3.5 1.6 821 chr3R 14993446 intergenic not near genes chr3R 14993856 intergenic not near genes chr3R 14994267 intergenic not near genes chr3R_7_14990001 chr3R_14990001 RAL-73 932 chr3R 15049463 15049482 chr3R 15049589 15049608 7 126 2.0 3.5 2.8 1.8 145 chr3R 15049463 intergenic not near genes chr3R 15049536 intergenic not near genes chr3R 15049608 intergenic not near genes chr3R_7_15045001 chr3R_15045001 RAL-73 933 chr3R 15132059 15132075 chr3R 15135119 15135135 Juan 7 3060 2.5 1.5 2.0 2.3 3076 chr3R 15132059 intergenic CG42788 - chr3R 15133597 intergenic not near genes chr3R 15135135 intergenic CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-73 934 chr3R 15267620 15267634 chr3R 15267705 15267720 5 85 5.0 2.5 3.8 1.0 100 chr3R 15267620 exon CG14864 - chr3R 15267670 exon CG14864 - chr3R 15267720 exon CG14864 - chr3R_5_15265001 chr3R_15265001 RAL-73 935 chr3R 15383649 15383677 chr3R 15383741 15383768 10 87 2.0 6.0 4.0 2.0 119 chr3R 15383649 exon Rbp + chr3R 15383708 exon Rbp + chr3R 15383768 intron Rbp + chr3R_10_15380001 chr3R_15380001 RAL-73 936 chr3R 15452277 15452305 chr3R 15452354 15452382 11 77 1.0 3.5 2.2 3.4 105 chr3R 15452277 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452382 intron AdamTS-A - chr3R_11_15450001 chr3R_15450001 RAL-73 937 chr3R 15517607 15517626 chr3R 15517686 15517708 7 82 3.5 1.5 2.5 2.0 101 chr3R 15517607 intergenic not near genes chr3R 15517658 intergenic not near genes chr3R 15517708 intergenic not near genes chr3R_7_15515001 chr3R_15515001 RAL-73 938 chr3R 15594656 15594666 chr3R 15594739 15594749 5 83 0.0 2.5 1.2 2.3 93 chr3R 15594656 intergenic not near genes chr3R 15594702 intergenic not near genes chr3R 15594749 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-73 939 chr3R 15601169 15601191 chr3R 15608691 15608713 412 7 7522 5.0 3.5 4.2 1.3 7544 chr3R 15601169 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608713 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-73 940 chr3R 15618731 15618762 chr3R 15626203 15626236 blood 7 7474 0.5 4.0 2.2 2.2 7505 chr3R 15618731 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626236 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-73 941 chr3R 15691185 15691324 chr3R 15691289 15691411 4 91 0.0 0.0 0.0 4.0 226 chr3R 15691185 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691411 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-73 942 chr3R 15734170 15734200 chr3R 15734261 15734291 6 90 2.0 0.5 1.2 2.7 121 chr3R 15734170 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734291 intergenic not near genes chr3R_6_15730001 chr3R_15730001 RAL-73 943 chr3R 15811502 15811530 chr3R 15811743 15811769 10 240 4.0 3.0 3.5 2.2 267 chr3R 15811502 intron alpha-Man-IIb + chr3R 15811636 intron alpha-Man-IIb + chr3R 15811769 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_10_15810001 chr3R_15810001 RAL-73 944 chr3R 15942670 15942694 chr3R 15943046 15943073 10 378 1.0 2.0 1.5 4.0 403 chr3R 15942670 intron Sap47 + chr3R 15942872 intron Sap47 + chr3R 15943073 intron Sap47 + chr3R_10_15940001 chr3R_15940001 RAL-73 945 chr3R 16005430 16005455 chr3R 16005507 16005535 5 80 5.0 3.5 4.2 1.0 105 chr3R 16005430 3` UTR CR42839 - chr3R 16005482 3` UTR CR42839 - chr3R 16005535 3` UTR CR42839 - chr3R_5_16005001 chr3R_16005001 RAL-73 946 chr3R 16105644 16105659 chr3R 16105764 16105779 5 120 1.0 1.5 1.2 2.3 135 chr3R 16105644 3` UTR Akt1 + chr3R 16105712 intergenic Akt1 + chr3R 16105779 intergenic Akt1 + chr3R_5_16105001 chr3R_16105001 RAL-73 947 chr3R 16111442 16111467 chr3R 16111518 16111543 8 76 6.0 0.5 3.2 1.9 101 chr3R 16111442 intergenic not near genes chr3R 16111492 intergenic not near genes chr3R 16111543 intergenic not near genes chr3R_8_16110001 chr3R_16110001 RAL-73 948 chr3R 16246523 16246554 chr3R 16246599 16246630 4 76 0.0 1.5 0.8 2.2 107 chr3R 16246523 intron tara + chr3R 16246576 intron tara + chr3R 16246630 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-73 949 chr3R 16472580 16472595 chr3R 16472656 16472671 13 75 9.5 5.0 7.2 1.6 91 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472671 5` UTR Gyc-89Da + chr3R_13_16470001 chr3R_16470001 RAL-73 950 chr3R 16725782 16725813 chr3R 16725863 16725894 6 81 1.0 1.5 1.2 2.7 112 chr3R 16725782 intron Ubx - chr3R 16725838 intron Ubx - chr3R 16725894 intron Ubx - chr3R_6_16725001 chr3R_16725001 RAL-73 951 chr3R 16756322 16756349 chr3R 16762513 16762540 diver 6 6191 2.5 0.0 1.2 2.7 6218 chr3R 16756322 intron bxd - chr3R 16759431 intron bxd - chr3R 16762540 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-73 952 chr3R 17591284 17591323 chr3R 17591720 17591759 F-element 6 436 2.0 1.5 1.8 2.1 475 chr3R 17591284 intergenic not near genes chr3R 17591522 intergenic not near genes chr3R 17591759 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-73 953 chr3R 17655861 17655890 chr3R 17655946 17655975 9 85 2.0 3.5 2.8 2.4 114 chr3R 17655861 intron CG14322 + chr3R 17655918 intron CG14322 + chr3R 17655975 intron CG14322 + chr3R_9_17655001 chr3R_17655001 RAL-73 954 chr3R 17925856 17925889 chr3R 17927322 17927356 hobo 19 1467 10.0 11.0 10.5 1.7 1500 chr3R 17925856 intron cpo + chr3R 17926606 intron cpo + chr3R 17927356 intron cpo + chr3R_19_17925001 chr3R_17925001 RAL-73 955 chr3R 18032786 18032803 chr3R 18040459 18040476 opus 4 7673 1.0 1.0 1.0 2.0 7690 chr3R 18032786 intergenic not near genes chr3R 18036631 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-73 956 chr3R 18129234 18129240 chr3R 18129310 18129318 5 78 4.5 1.0 2.8 1.3 84 chr3R 18129234 intron sr + chr3R 18129276 intron sr + chr3R 18129318 intron sr + chr3R_5_18125001 chr3R_18125001 RAL-73 957 chr3R 18322803 18322835 chr3R 18323448 18323473 7 639 22.5 11.5 17.0 0.4 670 chr3R 18322803 intron CG31235 - chr3R 18323138 intron CG31235 - chr3R 18323473 intron CG31235 - chr3R_7_18320001 chr3R_18320001 RAL-73 958 chr3R 18528376 18528398 chr3R 18528463 18528485 6 86 0.5 0.5 0.5 4.0 109 chr3R 18528376 intron fru - chr3R 18528430 intron fru - chr3R 18528485 intron fru - chr3R_6_18525001 chr3R_18525001 RAL-73 959 chr3R 18670397 18670412 chr3R 18670490 18670505 4 93 1.5 3.0 2.2 1.2 108 chr3R 18670397 intron CG7702 + chr3R 18670451 intron CG7702 + chr3R 18670505 intron CG7702 + chr3R_4_18670001 chr3R_18670001 RAL-73 960 chr3R 18697711 18697732 chr3R 18697847 18697868 6 136 2.5 2.0 2.2 1.9 157 chr3R 18697711 intergenic not near genes chr3R 18697790 intergenic not near genes chr3R 18697868 intergenic not near genes chr3R_6_18695001 chr3R_18695001 RAL-73 961 chr3R 18699522 18699530 chr3R 18699656 18699663 7 135 0.5 7.0 3.8 1.5 141 chr3R 18699522 intergenic not near genes chr3R 18699592 intergenic not near genes chr3R 18699663 intergenic not near genes chr3R_7_18695001 chr3R_18695001 RAL-73 962 chr3R 18727793 18727807 chr3R 18727864 18727868 5 71 3.5 6.0 4.8 0.9 75 chr3R 18727793 intron,exon Cha +,CG7715 - chr3R 18727830 intron,exon Cha +,CG7715 - chr3R 18727868 intron,exon Cha +,CG7715 - chr3R_5_18725001 chr3R_18725001 RAL-73 963 chr3R 18730024 18730035 chr3R 18730100 18730111 4 76 4.0 11.5 7.8 0.5 87 chr3R 18730024 intron Cha + chr3R 18730068 intron Cha + chr3R 18730111 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-73 964 chr3R 18781697 18781719 chr3R 18781769 18781795 7 75 0.5 2.0 1.2 3.2 98 chr3R 18781697 intron CG7720 - chr3R 18781746 intron CG7720 - chr3R 18781795 intron CG7720 - chr3R_7_18780001 chr3R_18780001 RAL-73 965 chr3R 18791497 18791514 chr3R 18791576 18791591 5 79 3.5 0.0 1.8 1.8 94 chr3R 18791497 intron CG7720 - chr3R 18791544 intron CG7720 - chr3R 18791591 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-73 966 chr3R 18812085 18812106 chr3R 18812163 18812184 6 78 2.5 6.0 4.2 1.2 99 chr3R 18812085 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-73 967 chr3R 18932556 18932587 chr3R 18932731 18932753 10 172 2.0 1.5 1.8 3.6 197 chr3R 18932556 intron CG42613 + chr3R 18932654 intron CG42613 + chr3R 18932753 intron CG42613 + chr3R_10_18930001 chr3R_18930001 RAL-73 968 chr3R 19077232 19077242 chr3R 19077537 19077559 5 315 1.5 1.5 1.5 2.0 327 chr3R 19077232 intron cdi - chr3R 19077396 intron cdi - chr3R 19077559 intron cdi - chr3R_5_19075001 chr3R_19075001 RAL-73 969 chr3R 19112999 19113032 chr3R 19113105 19113138 5 106 0.5 1.0 0.8 2.8 139 chr3R 19112999 intron CG6040 + chr3R 19113068 intron CG6040 + chr3R 19113138 intron CG6040 + chr3R_5_19110001 chr3R_19110001 RAL-73 970 chr3R 19282310 19282323 chr3R 19282385 19282399 7 76 2.0 3.0 2.5 2.0 89 chr3R 19282310 intergenic not near genes chr3R 19282354 intergenic not near genes chr3R 19282399 intergenic not near genes chr3R_7_19280001 chr3R_19280001 RAL-73 971 chr3R 19340400 19340426 chr3R 19340477 19340503 4 77 2.0 1.0 1.5 1.6 103 chr3R 19340400 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340503 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-73 972 chr3R 19587469 19587497 chr3R 19587556 19587584 7 87 0.5 1.0 0.8 3.9 115 chr3R 19587469 intron Dys + chr3R 19587526 intron Dys + chr3R 19587584 intron Dys + chr3R_7_19585001 chr3R_19585001 RAL-73 973 chr3R 19593504 19593515 chr3R 19593589 19593600 5 85 3.0 3.5 3.2 1.2 96 chr3R 19593504 intron Dys + chr3R 19593552 intron Dys + chr3R 19593600 intron Dys + chr3R_5_19590001 chr3R_19590001 RAL-73 974 chr3R 19668644 19668680 chr3R 19668720 19668748 13 75 4.0 4.5 4.2 2.5 104 chr3R 19668644 exon CG7432 + chr3R 19668696 exon CG7432 + chr3R 19668748 exon CG7432 + chr3R_13_19665001 chr3R_19665001 RAL-73 975 chr3R 19755428 19755448 chr3R 19755520 19755543 7 95 1.0 1.5 1.2 3.2 115 chr3R 19755428 intron GluClalpha + chr3R 19755486 intron GluClalpha + chr3R 19755543 intron GluClalpha + chr3R_7_19755001 chr3R_19755001 RAL-73 976 chr3R 19945971 19945996 chr3R 19946074 19946099 4 103 2.5 0.5 1.5 1.6 128 chr3R 19945971 intron Hs6st - chr3R 19946035 intron Hs6st - chr3R 19946099 intron Hs6st - chr3R_4_19945001 chr3R_19945001 RAL-73 977 chr3R 19952415 19952445 chr3R 19954213 19954243 12 1798 13.5 39.5 26.5 0.4 1828 chr3R 19952415 intron Hs6st - chr3R 19953329 intron Hs6st - chr3R 19954243 intron Hs6st - chr3R_12_19950001 chr3R_19950001 RAL-73 978 chr3R 19970670 19970683 chr3R 19971018 19971037 6 353 4.0 0.0 2.0 2.0 367 chr3R 19970670 intron Hs6st - chr3R 19970854 intron Hs6st - chr3R 19971037 intron Hs6st - chr3R_6_19970001 chr3R_19970001 RAL-73 979 chr3R 20008824 20008851 chr3R 20008905 20008932 8 81 0.5 4.5 2.5 2.3 108 chr3R 20008824 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008932 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 RAL-73 980 chr3R 20020151 20020183 chr3R 20020293 20020320 5 139 0.0 0.5 0.2 4.2 169 chr3R 20020151 intron CG4433 - chr3R 20020236 intron CG4433 - chr3R 20020320 intron CG4433 - chr3R_5_20020001 chr3R_20020001 RAL-73 981 chr3R 20060637 20060654 chr3R 20060720 20060737 5 83 2.5 3.0 2.8 1.3 100 chr3R 20060637 intergenic not near genes chr3R 20060687 intergenic not near genes chr3R 20060737 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-73 982 chr3R 20156696 20156720 chr3R 20165866 20165890 roo 7 9169 0.5 1.5 1.0 3.5 9194 chr3R 20156696 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165890 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-73 983 chr3R 20177813 20177822 chr3R 20177894 20177903 4 81 0.5 2.0 1.2 1.8 90 chr3R 20177813 intergenic not near genes chr3R 20177858 intergenic not near genes chr3R 20177903 intergenic not near genes chr3R_4_20175001 chr3R_20175001 RAL-73 984 chr3R 20266520 20266548 chr3R 20272991 20273019 Burdock 6 6471 0.5 2.5 1.5 2.4 6499 chr3R 20266520 intron cic + chr3R 20269770 intron cic + chr3R 20273019 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-73 985 chr3R 20286138 20286160 chr3R 20286222 20286244 7 84 3.5 0.0 1.8 2.5 106 chr3R 20286138 intron cic + chr3R 20286191 intron cic + chr3R 20286244 intron cic + chr3R_7_20285001 chr3R_20285001 RAL-73 986 chr3R 20352061 20352090 chr3R 20352166 20352194 9 105 0.0 3.5 1.8 3.2 133 chr3R 20352061 intergenic not near genes chr3R 20352128 intergenic not near genes chr3R 20352194 intergenic not near genes chr3R_9_20350001 chr3R_20350001 RAL-73 987 chr3R 20353955 20353976 chr3R 20354039 20354061 9 84 2.0 0.0 1.0 4.5 106 chr3R 20353955 intergenic not near genes chr3R 20354008 intergenic not near genes chr3R 20354061 intergenic not near genes chr3R_9_20350001 chr3R_20350001 RAL-73 988 chr3R 20467093 20467107 chr3R 20467153 20467182 9 72 2.5 5.0 3.8 1.9 89 chr3R 20467093 intron Gfrl - chr3R 20467138 intron Gfrl - chr3R 20467182 intron Gfrl - chr3R_9_20465001 chr3R_20465001 RAL-73 989 chr3R 20686963 20686986 chr3R 20687397 20687421 5 434 3.0 1.0 2.0 1.7 458 chr3R 20686963 intergenic not near genes chr3R 20687192 intergenic not near genes chr3R 20687421 intergenic not near genes chr3R_5_20685001 chr3R_20685001 RAL-73 990 chr3R 20722852 20722885 chr3R 20722979 20723012 8 127 3.0 2.0 2.5 2.3 160 chr3R 20722852 intergenic not near genes chr3R 20722932 intergenic not near genes chr3R 20723012 intergenic not near genes chr3R_8_20720001 chr3R_20720001 RAL-73 991 chr3R 20733763 20734012 chr3R 20733852 20734084 11 90 0.5 2.5 1.5 4.4 321 chr3R 20733763 intergenic not near genes chr3R 20733924 intergenic not near genes chr3R 20734084 intergenic not near genes chr3R_11_20730001 chr3R_20730001 RAL-73 992 chr3R 20787446 20787457 chr3R 20787537 20787548 4 91 1.5 2.0 1.8 1.4 102 chr3R 20787446 intron Syp + chr3R 20787497 intron Syp + chr3R 20787548 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-73 993 chr3R 20870251 20870284 chr3R 20870336 20870347 10 82 2.5 2.5 2.5 2.9 96 chr3R 20870251 intergenic not near genes chr3R 20870299 intergenic not near genes chr3R 20870347 intergenic not near genes chr3R_10_20870001 chr3R_20870001 RAL-73 994 chr3R 20901345 20901377 chr3R 20901431 20901439 12 83 3.0 5.0 4.0 2.4 94 chr3R 20901345 intergenic not near genes chr3R 20901392 intergenic not near genes chr3R 20901439 intergenic not near genes chr3R_12_20900001 chr3R_20900001 RAL-73 995 chr3R 20942815 20942838 chr3R 20942891 20942914 6 76 1.0 4.5 2.8 1.6 99 chr3R 20942815 intron CG31191 - chr3R 20942864 intron CG31191 - chr3R 20942914 intron CG31191 - chr3R_6_20940001 chr3R_20940001 RAL-73 996 chr3R 21141678 21141707 chr3R 21150159 21150186 Tirant 8 8478 1.5 3.0 2.2 2.5 8508 chr3R 21141678 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_8_21145001 chr3R_21145001 RAL-73 997 chr3R 21154570 21154587 chr3R 21154785 21154802 5 215 2.0 2.5 2.2 1.6 232 chr3R 21154570 intron SNF4Agamma + chr3R 21154686 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-73 998 chr3R 21321496 21321524 chr3R 21321592 21321620 5 96 1.0 0.0 0.5 3.3 124 chr3R 21321496 intron CG16791 - chr3R 21321558 intron CG16791 - chr3R 21321620 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-73 999 chr3R 21322973 21322995 chr3R 21323052 21323073 4 77 5.0 0.0 2.5 1.1 100 chr3R 21322973 intron CG16791 - chr3R 21323023 intron CG16791 - chr3R 21323073 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-73 1000 chr3R 21400604 21400632 chr3R 21400728 21400756 14 123 2.0 2.5 2.2 4.4 152 chr3R 21400604 intergenic not near genes chr3R 21400680 intergenic not near genes chr3R 21400756 intergenic not near genes chr3R_14_21400001 chr3R_21400001 RAL-73 1001 chr3R 21569842 21569868 chr3R 21569923 21569949 6 81 2.5 1.0 1.8 2.1 107 chr3R 21569842 intergenic InR - chr3R 21569896 intergenic InR - chr3R 21569949 intergenic InR - chr3R_6_21565001 chr3R_21565001 RAL-73 1002 chr3R 21652547 21652572 chr3R 21652627 21652652 4 80 0.5 0.0 0.2 3.3 105 chr3R 21652547 intron E2f - chr3R 21652600 intron E2f - chr3R 21652652 intron E2f - chr3R_4_21650001 chr3R_21650001 RAL-73 1003 chr3R 21761121 21761154 chr3R 21768512 21768546 mdg1 17 7390 2.0 3.5 2.8 4.5 7425 chr3R 21761121 exon CG42335 + chr3R 21764834 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_17_21760001 chr3R_21760001 RAL-73 1004 chr3R 8339246 8339246 chr3R 21907534 21907534 8 13568288 9.5 17.0 13.2 0.6 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-73 1005 chr3R 9620954 9620956 chr3R 21907534 21907534 6 12286579 6.5 17.0 11.8 0.5 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-73 1006 chr3R 21907534 21907534 chr3R 28831801 28831802 5 6924268 18.0 16.0 17.0 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-73 1007 chr3R 8339246 8339247 chr3R 21907535 21907535 11 13568288 9.5 17.0 13.2 0.8 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-73 1008 chr3R 9620956 9620956 chr3R 21907535 21907535 5 12286579 6.5 17.0 11.8 0.4 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-73 1009 chr3R 21907535 21907535 chr3R 28831801 28831802 11 6924266 18.0 16.0 17.0 0.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-73 1010 chr3R 8339246 8339247 chr3R 21907536 21907536 6 13568290 9.5 17.0 13.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-73 1011 chr3R 21907536 21907536 chr3R 28831801 28831802 11 6924266 17.5 16.0 16.8 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-73 1012 chr3R 22428576 22428607 chr3R 22428652 22428683 5 76 1.0 2.5 1.8 1.8 107 chr3R 22428576 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-73 1013 chr3R 22450541 22450577 chr3R 22453181 22453216 NOF 14 2640 1.0 4.5 2.8 3.7 2675 chr3R 22450541 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_14_22450001 chr3R_22450001 RAL-73 1014 chr3R 22468985 22469019 chr3R 22469164 22469198 15 179 3.0 2.0 2.5 4.3 213 chr3R 22468985 intergenic Nrx-1 + chr3R 22469092 intergenic Nrx-1 + chr3R 22469198 intergenic Nrx-1 + chr3R_15_22465001 chr3R_22465001 RAL-73 1015 chr3R 22538445 22538474 chr3R 22538530 22538559 5 85 1.0 1.5 1.2 2.3 114 chr3R 22538445 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-73 1016 chr3R 22632872 22632909 chr3R 22632962 22632999 8 90 1.0 1.5 1.2 3.6 127 chr3R 22632872 intron loco - chr3R 22632936 intron loco - chr3R 22632999 intron loco - chr3R_8_22630001 chr3R_22630001 RAL-73 1017 chr3R 22769092 22769124 chr3R 22769169 22769200 7 77 1.0 3.0 2.0 2.3 108 chr3R 22769092 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769200 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_7_22765001 chr3R_22765001 RAL-73 1018 chr3R 22794507 22794539 chr3R 22794583 22794616 6 77 1.0 1.0 1.0 3.0 109 chr3R 22794507 intergenic CG7029 + chr3R 22794562 intergenic not near genes chr3R 22794616 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-73 1019 chr3R 22797760 22797936 chr3R 22797846 22798032 16 89 0.0 0.0 0.0 16.0 272 chr3R 22797760 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_16_22795001 chr3R_22795001 RAL-73 1020 chr3R 22842392 22842418 chr3R 22842491 22842517 11 99 4.5 1.0 2.8 2.9 125 chr3R 22842392 intergenic not near genes chr3R 22842454 intergenic not near genes chr3R 22842517 intergenic not near genes chr3R_11_22840001 chr3R_22840001 RAL-73 1021 chr3R 22871439 22871461 chr3R 22871538 22871560 4 99 5.0 1.5 3.2 1.0 121 chr3R 22871439 intergenic not near genes chr3R 22871500 intergenic not near genes chr3R 22871560 intergenic not near genes chr3R_4_22870001 chr3R_22870001 RAL-73 1022 chr3R 22877303 22877319 chr3R 22877431 22877447 5 127 3.0 0.5 1.8 1.8 144 chr3R 22877303 intergenic not near genes chr3R 22877375 intergenic not near genes chr3R 22877447 intergenic not near genes chr3R_5_22875001 chr3R_22875001 RAL-73 1023 chr3R 22880606 22880613 chr3R 22880683 22880690 4 77 7.5 7.5 7.5 0.5 84 chr3R 22880606 intergenic not near genes chr3R 22880648 intergenic not near genes chr3R 22880690 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-73 1024 chr3R 22913914 22913948 chr3R 22913994 22914028 12 80 0.5 1.5 1.0 6.0 114 chr3R 22913914 intron klg + chr3R 22913971 intron klg + chr3R 22914028 intron klg + chr3R_12_22910001 chr3R_22910001 RAL-73 1025 chr3R 22927874 22927906 chr3R 22927964 22928001 13 93 5.0 6.5 5.8 1.9 127 chr3R 22927874 intron klg + chr3R 22927938 intron klg + chr3R 22928001 intron klg + chr3R_13_22925001 chr3R_22925001 RAL-73 1026 chr3R 22971248 22971270 chr3R 22971342 22971364 9 94 4.5 6.0 5.2 1.5 116 chr3R 22971248 intergenic not near genes chr3R 22971306 intergenic not near genes chr3R 22971364 intergenic not near genes chr3R_9_22970001 chr3R_22970001 RAL-73 1027 chr3R 22993515 22993535 chr3R 22993650 22993670 6 134 4.0 3.5 3.8 1.2 155 chr3R 22993515 intron Nha2 - chr3R 22993592 intron Nha2 - chr3R 22993670 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-73 1028 chr3R 22994991 22995031 chr3R 22995110 22995150 8 119 3.5 2.0 2.8 2.1 159 chr3R 22994991 intron Nha2 - chr3R 22995070 intron Nha2 - chr3R 22995150 intron Nha2 - chr3R_8_22995001 chr3R_22995001 RAL-73 1029 chr3R 23099794 23099811 chr3R 23099874 23099891 7 80 1.5 7.5 4.5 1.3 97 chr3R 23099794 intron,exon CG13830 -,CG6738 + chr3R 23099842 intron,exon CG13830 -,CG6738 + chr3R 23099891 intron,exon CG13830 -,CG6738 + chr3R_7_23095001 chr3R_23095001 RAL-73 1030 chr3R 23335435 23335455 chr3R 23335510 23335532 7 77 2.5 1.0 1.8 2.5 97 chr3R 23335435 intron pnt - chr3R 23335484 intron pnt - chr3R 23335532 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-73 1031 chr3R 23338899 23338906 chr3R 23338970 23338982 4 73 6.5 3.5 5.0 0.7 83 chr3R 23338899 intron pnt - chr3R 23338940 intron pnt - chr3R 23338982 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-73 1032 chr3R 23421974 23422011 chr3R 23422059 23422096 11 84 3.0 3.0 3.0 2.8 122 chr3R 23421974 intron CG4374 - chr3R 23422035 intron CG4374 - chr3R 23422096 intron CG4374 - chr3R_11_23420001 chr3R_23420001 RAL-73 1033 chr3R 23549157 23549181 chr3R 23549256 23549286 6 102 4.0 5.5 4.8 1.0 129 chr3R 23549157 intergenic not near genes chr3R 23549222 intergenic not near genes chr3R 23549286 intergenic not near genes chr3R_6_23545001 chr3R_23545001 RAL-73 1034 chr3R 23556305 23556341 chr3R 23556408 23556444 10 103 1.5 3.0 2.2 3.1 139 chr3R 23556305 5` UTR CG10164 - chr3R 23556374 5` UTR CG10164 - chr3R 23556444 5` UTR CG10164 - chr3R_10_23555001 chr3R_23555001 RAL-73 1035 chr3R 23630473 23630504 chr3R 23630607 23630639 11 133 1.5 1.5 1.5 4.4 166 chr3R 23630473 intron CG31145 - chr3R 23630556 intron CG31145 - chr3R 23630639 intron CG31145 - chr3R_11_23630001 chr3R_23630001 RAL-73 1036 chr3R 23684695 23684730 chr3R 23685180 23685198 roo 20 476 5.0 4.0 4.5 3.6 503 chr3R 23684695 exon CG18754 + chr3R 23684946 intron CG18754 + chr3R 23685198 exon CG18754 + chr3R_20_23680001 chr3R_23680001 RAL-73 1037 chr3R 23944912 23944936 chr3R 23944997 23945021 8 85 1.5 5.5 3.5 1.8 109 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-73 1038 chr3R 24015061 24015087 chr3R 24015137 24015161 8 76 1.5 0.5 1.0 4.0 100 chr3R 24015061 intron KrT95D - chr3R 24015111 intron KrT95D - chr3R 24015161 intron KrT95D - chr3R_8_24015001 chr3R_24015001 RAL-73 1039 chr3R 24072084 24072101 chr3R 24072522 24072539 jockey 6 437 7.5 0.0 3.8 1.2 455 chr3R 24072084 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072539 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-73 1040 chr3R 24076923 24076947 chr3R 24078389 24078414 hobo 8 1466 3.5 3.5 3.5 1.8 1491 chr3R 24076923 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-73 1041 chr3R 24207225 24207239 chr3R 24212299 24212315 flea 4 5076 6.0 4.0 5.0 0.7 5090 chr3R 24207225 intron twin - chr3R 24209770 intron twin - chr3R 24212315 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-73 1042 chr3R 24236463 24236496 chr3R 24236540 24236573 10 72 4.5 3.5 4.0 2.0 110 chr3R 24236463 exon mask + chr3R 24236518 intron mask + chr3R 24236573 intron mask + chr3R_10_24235001 chr3R_24235001 RAL-73 1043 chr3R 24288248 24288278 chr3R 24288422 24288452 6 174 3.0 0.0 1.5 2.4 204 chr3R 24288248 3` UTR CG6356 + chr3R 24288350 3` UTR CG6356 + chr3R 24288452 3` UTR CG6356 + chr3R_6_24285001 chr3R_24285001 RAL-73 1044 chr3R 24624376 24624383 chr3R 24624465 24624472 4 88 1.5 2.5 2.0 1.3 96 chr3R 24624376 intron Syx18 - chr3R 24624424 intron Syx18 - chr3R 24624472 intron Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-73 1045 chr3R 24927124 24927155 chr3R 24931915 24931946 Doc 8 4791 1.5 4.5 3.0 2.0 4822 chr3R 24927124 intergenic Trf4-2 + chr3R 24929535 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-73 1046 chr3R 25027540 25027565 chr3R 25027753 25027778 7 213 3.0 1.5 2.2 2.2 238 chr3R 25027540 intron Hr96 + chr3R 25027659 intron Hr96 + chr3R 25027778 intron Hr96 + chr3R_7_25025001 chr3R_25025001 RAL-73 1047 chr3R 25464495 25464524 chr3R 25464811 25464841 8 317 0.5 2.0 1.2 3.6 346 chr3R 25464495 intron Fur1 - chr3R 25464668 intron Fur1 - chr3R 25464841 intron Fur1 - chr3R_8_25460001 chr3R_25460001 RAL-73 1048 chr3R 25832694 25832722 chr3R 25841876 25841904 roo 6 9182 3.5 4.5 4.0 1.2 9210 chr3R 25832694 exon alpha4GT2 + chr3R 25837299 intron alpha4GT2 + chr3R 25841904 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-73 1049 chr3R 25967397 25967429 chr3R 25967482 25967513 8 82 5.5 2.0 3.8 1.7 116 chr3R 25967397 intergenic boss + chr3R 25967455 intergenic not near genes chr3R 25967513 intergenic not near genes chr3R_8_25965001 chr3R_25965001 RAL-73 1050 chr3R 26108829 26108858 chr3R 26117412 26117421 Tirant 6 8579 1.5 0.0 0.8 3.3 8592 chr3R 26108829 5` UTR CG31324 + chr3R 26113125 intron CG31324 + chr3R 26117421 intron CG31324 + chr3R_6_26110001 chr3R_26110001 RAL-73 1051 chr3R 26122464 26122478 chr3R 26122540 26122554 8 75 5.5 1.0 3.2 1.9 90 chr3R 26122464 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122554 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-73 1052 chr3R 26265817 26265847 chr3R 26265903 26265935 11 87 2.0 1.5 1.8 3.9 118 chr3R 26265817 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265935 intron CG6154 + chr3R_11_26265001 chr3R_26265001 RAL-73 1053 chr3R 26275093 26275106 chr3R 26275248 26275263 4 156 0.0 1.5 0.8 2.2 170 chr3R 26275093 3` UTR CG6154 + chr3R 26275178 3` UTR CG6154 + chr3R 26275263 3` UTR CG6154 + chr3R_4_26275001 chr3R_26275001 RAL-73 1054 chr3R 26292106 26292139 chr3R 26292186 26292219 4 80 0.5 1.0 0.8 2.2 113 chr3R 26292106 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-73 1055 chr3R 26294724 26294745 chr3R 26294801 26294823 4 78 0.5 1.5 1.0 2.0 99 chr3R 26294724 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294823 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-73 1056 chr3R 26316398 26316420 chr3R 26316483 26316505 7 84 2.5 2.0 2.2 2.2 107 chr3R 26316398 intergenic not near genes chr3R 26316452 intergenic not near genes chr3R 26316505 intergenic not near genes chr3R_7_26315001 chr3R_26315001 RAL-73 1057 chr3R 26374839 26374854 chr3R 26374941 26374956 4 102 1.5 3.5 2.5 1.1 117 chr3R 26374839 intergenic not near genes chr3R 26374898 intergenic not near genes chr3R 26374956 intergenic not near genes chr3R_4_26370001 chr3R_26370001 RAL-73 1058 chr3R 26376330 26376354 chr3R 26385490 26385514 roo 5 9160 2.5 0.0 1.2 2.3 9184 chr3R 26376330 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-73 1059 chr3R 26541011 26541031 chr3R 26541090 26541110 4 79 0.0 0.0 0.0 4.0 99 chr3R 26541011 intron scrib + chr3R 26541060 intron scrib + chr3R 26541110 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-73 1060 chr3R 26542046 26542072 chr3R 26542136 26542163 8 91 3.0 3.0 3.0 2.0 117 chr3R 26542046 intron scrib + chr3R 26542104 intron scrib + chr3R 26542163 intron scrib + chr3R_8_26540001 chr3R_26540001 RAL-73 1061 chr3R 26558347 26558355 chr3R 26565656 26565667 Stalker4 4 7311 5.0 6.0 5.5 0.6 7320 chr3R 26558347 intron scrib + chr3R 26562007 intron scrib + chr3R 26565667 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-73 1062 chr3R 26641644 26641663 chr3R 26641731 26641750 5 87 1.5 4.0 2.8 1.3 106 chr3R 26641644 intergenic not near genes chr3R 26641697 intergenic not near genes chr3R 26641750 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-73 1063 chr3R 26651522 26651547 chr3R 26651607 26651632 8 85 2.5 2.0 2.2 2.5 110 chr3R 26651522 intron beat-VII - chr3R 26651577 intron beat-VII - chr3R 26651632 intron beat-VII - chr3R_8_26650001 chr3R_26650001 RAL-73 1064 chr3R 26770248 26770269 chr3R 26770325 26770346 4 77 1.5 2.0 1.8 1.4 98 chr3R 26770248 intergenic CR45563 + chr3R 26770297 intergenic CR45563 + chr3R 26770346 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-73 1065 chr3R 26951885 26952101 chr3R 26951993 26952185 9 103 0.5 1.0 0.8 5.0 300 chr3R 26951885 exon CG6330 - chr3R 26952035 intron CG6330 - chr3R 26952185 intron CG6330 - chr3R_9_26950001 chr3R_26950001 RAL-73 1066 chr3R 27019515 27019540 chr3R 27019611 27019636 11 95 2.0 1.5 1.8 3.9 121 chr3R 27019515 intron,exon RYa-R +,CG17191 - chr3R 27019576 intron,exon RYa-R +,CG17191 - chr3R 27019636 intron,intron RYa-R +,CG17191 - chr3R_11_27015001 chr3R_27015001 RAL-73 1067 chr3R 27028723 27028744 chr3R 27028802 27028823 6 79 1.0 2.5 1.8 2.1 100 chr3R 27028723 intron RYa-R + chr3R 27028773 intron RYa-R + chr3R 27028823 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-73 1068 chr3R 27140521 27140537 chr3R 27148131 27148147 412 6 7610 4.0 5.5 4.8 1.0 7626 chr3R 27140521 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148147 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-73 1069 chr3R 27342807 27342824 chr3R 27351388 27351405 Tirant 5 8581 1.0 2.0 1.5 2.0 8598 chr3R 27342807 intron CG42534 + chr3R 27347106 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-73 1070 chr3R 27377474 27377502 chr3R 27377559 27377589 10 87 4.5 1.5 3.0 2.5 115 chr3R 27377474 3` UTR side - chr3R 27377532 3` UTR side - chr3R 27377589 3` UTR side - chr3R_10_27375001 chr3R_27375001 RAL-73 1071 chr3R 27456137 27456164 chr3R 27456224 27456248 9 86 2.5 3.5 3.0 2.2 111 chr3R 27456137 intergenic not near genes chr3R 27456192 intergenic not near genes chr3R 27456248 intergenic not near genes chr3R_9_27455001 chr3R_27455001 RAL-73 1072 chr3R 27578480 27578514 chr3R 27578570 27578604 18 90 4.5 5.0 4.8 3.1 124 chr3R 27578480 intron wdb - chr3R 27578542 intron wdb - chr3R 27578604 intron wdb - chr3R_18_27575001 chr3R_27575001 RAL-73 1073 chr3R 27619700 27619730 chr3R 27619815 27619831 9 113 3.0 4.0 3.5 2.0 131 chr3R 27619700 intron Tusp + chr3R 27619766 intron Tusp + chr3R 27619831 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-73 1074 chr3R 27626848 27627115 chr3R 27626932 27627217 14 98 3.0 3.0 3.0 3.5 369 chr3R 27626848 intron Tusp + chr3R 27627032 intron Tusp + chr3R 27627217 intron Tusp + chr3R_14_27625001 chr3R_27625001 RAL-73 1075 chr3R 27648588 27648870 chr3R 27648670 27648945 20 77 5.0 0.0 2.5 5.7 357 chr3R 27648588 intron tau - chr3R 27648766 intron tau - chr3R 27648945 intron tau - chr3R_20_27645001 chr3R_27645001 RAL-73 1076 chr3R 27705359 27705389 chr3R 27705439 27705469 13 80 1.5 1.5 1.5 5.2 110 chr3R 27705359 exon CG12428 - chr3R 27705414 intron CG12428 - chr3R 27705469 exon CG12428 - chr3R_13_27705001 chr3R_27705001 RAL-73 1077 chr3R 27725566 27725593 chr3R 27731008 27731035 I-element 5 5442 2.0 1.5 1.8 1.8 5469 chr3R 27725566 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731035 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-73 1078 chr3R 27779270 27779286 chr3R 27779349 27779366 9 80 4.0 7.0 5.5 1.4 96 chr3R 27779270 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_9_27775001 chr3R_27775001 RAL-73 1079 chr3R 27800691 27800719 chr3R 27800786 27800814 17 94 3.0 4.5 3.8 3.5 123 chr3R 27800691 intron CG34353 - chr3R 27800752 intron CG34353 - chr3R 27800814 intron CG34353 - chr3R_17_27800001 chr3R_27800001 RAL-73 1080 chr3R 27811354 27811385 chr3R 27811500 27811531 14 146 3.5 0.0 1.8 5.0 177 chr3R 27811354 intron CG34353 - chr3R 27811442 intron CG34353 - chr3R 27811531 intron CG34353 - chr3R_14_27810001 chr3R_27810001 RAL-73 1081 chr3R 27812428 27812461 chr3R 27812504 27812538 5 77 4.5 3.5 4.0 1.0 110 chr3R 27812428 intron CG34353 - chr3R 27812483 intron CG34353 - chr3R 27812538 intron CG34353 - chr3R_5_27810001 chr3R_27810001 RAL-73 1082 chr3R 27840251 27840258 chr3R 27840373 27840378 5 121 0.0 0.0 0.0 5.0 127 chr3R 27840251 intron CG34353 - chr3R 27840314 intron CG34353 - chr3R 27840378 intron CG34353 - chr3R_5_27840001 chr3R_27840001 RAL-73 1083 chr3R 27856762 27856784 chr3R 27858244 27858267 hopper2 5 1483 4.0 2.0 3.0 1.2 1505 chr3R 27856762 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858267 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-73 1084 chr3R 27862954 27862986 chr3R 27868259 27868291 Transpac 7 5304 0.5 0.5 0.5 4.7 5337 chr3R 27862954 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868291 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-73 1085 chr3R 27875702 27875709 chr3R 27882757 27882764 297 5 7055 5.5 0.5 3.0 1.2 7062 chr3R 27875702 intron CG34353 - chr3R 27879233 intron CG34353 - chr3R 27882764 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-73 1086 chr3R 28019567 28019578 chr3R 28019657 28019668 4 90 0.5 2.0 1.2 1.8 101 chr3R 28019567 intergenic not near genes chr3R 28019618 intergenic not near genes chr3R 28019668 intergenic not near genes chr3R_4_28015001 chr3R_28015001 RAL-73 1087 chr3R 28068501 28068520 chr3R 28073943 28073961 I-element 4 5442 1.0 1.5 1.2 1.8 5460 chr3R 28068501 intron CG34362 + chr3R 28071231 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-73 1088 chr3R 28103323 28103348 chr3R 28103416 28103440 6 93 2.0 3.5 2.8 1.6 117 chr3R 28103323 intergenic not near genes chr3R 28103382 intergenic not near genes chr3R 28103440 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-73 1089 chr3R 28152340 28152362 chr3R 28152417 28152439 4 77 1.0 1.0 1.0 2.0 99 chr3R 28152340 intron CG34354 + chr3R 28152390 intron CG34354 + chr3R 28152439 intron CG34354 + chr3R_4_28150001 chr3R_28150001 RAL-73 1090 chr3R 28173671 28173705 chr3R 28181101 28181135 mdg1 5 7430 0.0 2.0 1.0 2.5 7464 chr3R 28173671 intron CG34354 + chr3R 28177403 intron CG34354 + chr3R 28181135 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-73 1091 chr3R 28253355 28253362 chr3R 28255865 28255872 jockey 6 2510 2.5 3.0 2.8 1.6 2517 chr3R 28253355 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255872 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-73 1092 chr3R 28282989 28283013 chr3R 28283618 28283642 4 629 1.0 3.0 2.0 1.3 653 chr3R 28282989 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283642 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-73 1093 chr3R 28290033 28290058 chr3R 28290118 28290139 7 83 4.5 3.5 4.0 1.4 106 chr3R 28290033 intergenic not near genes chr3R 28290086 intergenic not near genes chr3R 28290139 intergenic not near genes chr3R_7_28290001 chr3R_28290001 RAL-73 1094 chr3R 28468926 28468957 chr3R 28469012 28469038 8 85 1.5 5.0 3.2 1.9 112 chr3R 28468926 intron beat-VI + chr3R 28468982 intron beat-VI + chr3R 28469038 intron beat-VI + chr3R_8_28465001 chr3R_28465001 RAL-73 1095 chr3R 28478432 28478448 chr3R 28478496 28478529 5 78 5.0 3.5 4.2 1.0 97 chr3R 28478432 intergenic not near genes chr3R 28478480 intergenic not near genes chr3R 28478529 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-73 1096 chr3R 28484353 28484374 chr3R 28486270 28486291 24 1917 21.0 47.5 34.2 0.7 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_24_28485001 chr3R_28485001 RAL-73 1097 chr3R 28633191 28633212 chr3R 28633269 28633292 6 80 2.0 1.0 1.5 2.4 101 chr3R 28633191 intron CG10011 - chr3R 28633242 intron CG10011 - chr3R 28633292 intron CG10011 - chr3R_6_28630001 chr3R_28630001 RAL-73 1098 chr3R 28643414 28643433 chr3R 28643576 28643596 8 162 4.5 3.5 4.0 1.6 182 chr3R 28643414 intergenic not near genes chr3R 28643505 intergenic not near genes chr3R 28643596 intergenic not near genes chr3R_8_28640001 chr3R_28640001 RAL-73 1099 chr3R 28691171 28691199 chr3R 28691269 28691298 4 99 2.0 1.0 1.5 1.6 127 chr3R 28691171 intron CG9990 + chr3R 28691234 intron CG9990 + chr3R 28691298 intron CG9990 + chr3R_4_28690001 chr3R_28690001 RAL-73 1100 chr3R 28716894 28716923 chr3R 28717053 28717082 10 157 4.5 3.5 4.0 2.0 188 chr3R 28716894 intron htt + chr3R 28716988 intron htt + chr3R 28717082 intron htt + chr3R_10_28715001 chr3R_28715001 RAL-73 1101 chr3R 28792869 28792903 chr3R 28797964 28797992 jockey 9 5093 2.0 2.5 2.2 2.8 5123 chr3R 28792869 intergenic not near genes chr3R 28795430 intergenic not near genes chr3R 28797992 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-73 1102 chr3R 21907534 21907536 chr3R 28831799 28831802 47 6924266 17.5 15.5 16.5 2.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_47_25365001 chr3R_25365001 RAL-73 1103 chr3R 28947971 28947997 chr3R 28948083 28948109 5 112 1.5 0.5 1.0 2.5 138 chr3R 28947971 intron CG14521 - chr3R 28948040 intron CG14521 - chr3R 28948109 intron CG14521 - chr3R_5_28945001 chr3R_28945001 RAL-73 1104 chr3R 28989005 28989010 chr3R 28989083 28989089 4 79 0.0 1.0 0.5 2.7 84 chr3R 28989005 intergenic not near genes chr3R 28989047 intergenic not near genes chr3R 28989089 intergenic not near genes chr3R_4_28985001 chr3R_28985001 RAL-73 1105 chr3R 29141545 29141578 chr3R 29141623 29141655 5 78 0.0 1.0 0.5 3.3 110 chr3R 29141545 intron CG14516 + chr3R 29141600 intron CG14516 + chr3R 29141655 intron CG14516 + chr3R_5_29140001 chr3R_29140001 RAL-73 1106 chr3R 29213058 29213092 chr3R 29213141 29213175 5 83 2.0 2.5 2.2 1.6 117 chr3R 29213058 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_5_29210001 chr3R_29210001 RAL-73 1107 chr3R 29237270 29237285 chr3R 29239291 29239303 6 2020 12.5 3.0 7.8 0.7 2033 chr3R 29237270 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-73 1108 chr3R 29256264 29256300 chr3R 29256344 29256380 15 80 4.0 1.5 2.8 3.9 116 chr3R 29256264 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_15_29255001 chr3R_29255001 RAL-73 1109 chr3R 29380343 29380368 chr3R 29380421 29380452 10 83 1.5 3.5 2.5 2.9 109 chr3R 29380343 intron Ptp99A + chr3R 29380398 intron Ptp99A + chr3R 29380452 intron Ptp99A + chr3R_10_29380001 chr3R_29380001 RAL-73 1110 chr3R 29397328 29397347 chr3R 29397442 29397461 7 113 3.0 2.0 2.5 2.0 133 chr3R 29397328 intron Ptp99A + chr3R 29397394 intron Ptp99A + chr3R 29397461 intron Ptp99A + chr3R_7_29395001 chr3R_29395001 RAL-73 1111 chr3R 29403306 29403329 chr3R 29403384 29403407 9 78 4.5 4.0 4.2 1.7 101 chr3R 29403306 intron Ptp99A + chr3R 29403356 intron Ptp99A + chr3R 29403407 intron Ptp99A + chr3R_9_29400001 chr3R_29400001 RAL-73 1112 chr3R 29406623 29406641 chr3R 29407909 29407927 jockey 4 1286 1.5 4.5 3.0 1.0 1304 chr3R 29406623 intron Ptp99A + chr3R 29407275 intron Ptp99A + chr3R 29407927 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-73 1113 chr3R 29472016 29472034 chr3R 29472102 29472127 9 91 7.5 3.5 5.5 1.4 111 chr3R 29472016 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-73 1114 chr3R 29505909 29505918 chr3R 29505986 29505995 4 77 0.0 2.5 1.2 1.8 86 chr3R 29505909 intergenic not near genes chr3R 29505952 intergenic not near genes chr3R 29505995 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-73 1115 chr3R 29516573 29516604 chr3R 29516657 29516688 15 83 4.0 2.5 3.2 3.6 115 chr3R 29516573 intergenic CG2014 + chr3R 29516630 intergenic CG2014 + chr3R 29516688 intergenic CG2014 + chr3R_15_29515001 chr3R_29515001 RAL-73 1116 chr3R 29738262 29738295 chr3R 29739729 29739762 hobo 8 1467 5.0 1.5 3.2 1.9 1500 chr3R 29738262 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739762 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-73 1117 chr3R 29881016 29881036 chr3R 29881102 29881121 4 86 0.5 2.0 1.2 1.8 105 chr3R 29881016 intron CG31038 + chr3R 29881068 intron CG31038 + chr3R 29881121 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-73 1118 chr3R 29882019 29882053 chr3R 29891176 29891210 roo 9 9157 0.0 1.0 0.5 6.0 9191 chr3R 29882019 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-73 1119 chr3R 29963477 29963510 chr3R 29963579 29963612 8 102 2.0 1.5 1.8 2.9 135 chr3R 29963477 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-73 1120 chr3R 30082988 30083021 chr3R 30083064 30083097 4 76 2.0 0.5 1.2 1.8 109 chr3R 30082988 intron sima + chr3R 30083042 intron sima + chr3R 30083097 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-73 1121 chr3R 30084854 30084878 chr3R 30086321 30086345 hobo 7 1467 4.5 5.5 5.0 1.2 1491 chr3R 30084854 intron sima + chr3R 30085600 intron sima + chr3R 30086345 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-73 1122 chr3R 30105048 30105059 chr3R 30105138 30105149 4 90 0.0 0.0 0.0 4.0 101 chr3R 30105048 intron sima + chr3R 30105098 intron sima + chr3R 30105149 intron sima + chr3R_4_30105001 chr3R_30105001 RAL-73 1123 chr3R 30106394 30106405 chr3R 30106502 30106507 4 106 0.0 4.5 2.2 1.2 113 chr3R 30106394 intron sima + chr3R 30106450 intron sima + chr3R 30106507 intron sima + chr3R_4_30105001 chr3R_30105001 RAL-73 1124 chr3R 30108823 30108858 chr3R 30108925 30108958 12 101 4.0 5.5 4.8 2.1 135 chr3R 30108823 intron sima + chr3R 30108890 intron sima + chr3R 30108958 intron sima + chr3R_12_30105001 chr3R_30105001 RAL-73 1125 chr3R 30124961 30124974 chr3R 30125038 30125051 4 77 3.0 6.0 4.5 0.7 90 chr3R 30124961 intergenic CG45073 - chr3R 30125006 intergenic CG45073 - chr3R 30125051 intergenic CG45073 - chr3R_4_30125001 chr3R_30125001 RAL-73 1126 chr3R 30267994 30268261 chr3R 30268078 30268340 5 82 5.5 3.5 4.5 0.9 346 chr3R 30267994 intergenic not near genes chr3R 30268167 intergenic not near genes chr3R 30268340 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-73 1127 chr3R 30317335 30317353 chr3R 30324927 30324945 roo 5 7592 1.5 2.0 1.8 1.8 7610 chr3R 30317335 intron hdc + chr3R 30321140 intron hdc + chr3R 30324945 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-73 1128 chr3R 30407005 30407039 chr3R 30407086 30407120 8 81 4.0 3.0 3.5 1.8 115 chr3R 30407005 intergenic not near genes chr3R 30407062 intergenic not near genes chr3R 30407120 intergenic not near genes chr3R_8_30405001 chr3R_30405001 RAL-73 1129 chr3R 30480475 30480512 chr3R 30482940 30482980 jockey 21 2468 4.0 2.0 3.0 5.2 2505 chr3R 30480475 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482980 intron PH4alphaEFB + chr3R_21_30480001 chr3R_30480001 RAL-73 1130 chr3R 30519220 30519232 chr3R 30519290 30519301 6 72 1.5 4.5 3.0 1.5 81 chr3R 30519220 intron jdp - chr3R 30519260 intron jdp - chr3R 30519301 intron jdp - chr3R_6_30515001 chr3R_30515001 RAL-73 1131 chr3R 30522922 30522943 chr3R 30523008 30523029 6 86 1.0 1.5 1.2 2.7 107 chr3R 30522922 intron jdp - chr3R 30522976 intron jdp - chr3R 30523029 intron jdp - chr3R_6_30520001 chr3R_30520001 RAL-73 1132 chr3R 30620830 30620853 chr3R 30620910 30620933 4 80 8.0 2.0 5.0 0.7 103 chr3R 30620830 intron CG44954 - chr3R 30620882 intron CG44954 - chr3R 30620933 intron CG44954 - chr3R_4_30620001 chr3R_30620001 RAL-73 1133 chr3R 30627609 30627638 chr3R 30627689 30627718 10 78 4.0 6.0 5.0 1.7 109 chr3R 30627609 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-73 1134 chr3R 30649845 30649879 chr3R 30649924 30649959 4 80 0.5 2.0 1.2 1.8 114 chr3R 30649845 3` UTR CG34432 + chr3R 30649902 intergenic CG34432 +,CG34433 + chr3R 30649959 intergenic CG34433 +,CG34432 + chr3R_4_30645001 chr3R_30645001 RAL-73 1135 chr3R 30679518 30679549 chr3R 30686987 30687018 blood 5 7469 2.5 2.0 2.2 1.6 7500 chr3R 30679518 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-73 1136 chr3R 30948075 30948106 chr3R 30948266 30948297 16 191 3.5 4.0 3.8 3.3 222 chr3R 30948075 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948297 intergenic not near genes chr3R_16_30945001 chr3R_30945001 RAL-73 1137 chr3R 31042112 31042142 chr3R 31042199 31042229 10 87 0.5 3.0 1.8 3.6 117 chr3R 31042112 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042229 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-73 1138 chr3R 31074239 31074262 chr3R 31081837 31081860 springer 5 7598 1.5 5.5 3.5 1.1 7621 chr3R 31074239 intron Sox100B + chr3R 31078050 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-73 1139 chr3R 31279383 31279404 chr3R 31285574 31285594 diver 8 6189 3.0 7.5 5.2 1.3 6211 chr3R 31279383 intergenic not near genes chr3R 31282488 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-73 1140 chr3R 31366252 31366285 chr3R 31366393 31366426 11 140 1.5 0.5 1.0 5.5 174 chr3R 31366252 intron CG34347 + chr3R 31366339 intron CG34347 + chr3R 31366426 intron CG34347 + chr3R_11_31365001 chr3R_31365001 RAL-73 1141 chr3R 31413090 31413118 chr3R 31418290 31418317 copia 11 5200 3.0 0.0 1.5 4.4 5227 chr3R 31413090 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-73 1142 chr3R 31430738 31430745 chr3R 31430809 31430833 7 83 1.0 3.5 2.2 2.2 95 chr3R 31430738 intron Gprk2 + chr3R 31430786 intron Gprk2 + chr3R 31430833 intron Gprk2 + chr3R_7_31430001 chr3R_31430001 RAL-73 1143 chr3R 31435362 31435391 chr3R 31435514 31435543 5 152 0.5 0.0 0.2 4.2 181 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-73 1144 chr3R 31450774 31450794 chr3R 31450941 31450960 10 166 26.5 18.5 22.5 0.4 186 chr3R 31450774 intron Gprk2 + chr3R 31450867 intron Gprk2 + chr3R 31450960 intron Gprk2 + chr3R_10_31450001 chr3R_31450001 RAL-73 1145 chr3R 31453222 31453250 chr3R 31453300 31453328 9 78 4.0 3.0 3.5 2.0 106 chr3R 31453222 intron Gprk2 + chr3R 31453275 intron Gprk2 + chr3R 31453328 exon Gprk2 + chr3R_9_31450001 chr3R_31450001 RAL-73 1146 chr3R 31477373 31477383 chr3R 31477541 31477551 5 168 1.0 2.0 1.5 2.0 178 chr3R 31477373 intergenic not near genes chr3R 31477462 intergenic not near genes chr3R 31477551 intergenic not near genes chr3R_5_31475001 chr3R_31475001 RAL-73 1147 chr3R 31639979 31640013 chr3R 31640064 31640078 7 81 3.0 3.5 3.2 1.7 99 chr3R 31639979 intron kek6 + chr3R 31640028 intron kek6 + chr3R 31640078 intron kek6 + chr3R_7_31640001 chr3R_31640001 RAL-73 1148 chr3R 31691531 31691558 chr3R 31696297 31696324 Doc 7 4763 4.0 4.5 4.2 1.3 4793 chr3R 31691531 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696324 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-73 1149 chr3R 31699733 31699752 chr3R 31699806 31699822 10 80 3.0 8.0 5.5 1.5 89 chr3R 31699733 intergenic not near genes chr3R 31699778 intergenic not near genes chr3R 31699822 intergenic not near genes chr3R_10_31695001 chr3R_31695001 RAL-73 1150 chr3R 31831539 31831568 chr3R 31831618 31831647 15 79 4.5 3.0 3.8 3.1 108 chr3R 31831539 intron RhoGAP100F + chr3R 31831593 intron RhoGAP100F + chr3R 31831647 intron RhoGAP100F + chr3R_15_31830001 chr3R_31830001 RAL-73 1151 chr3R 31897845 31897876 chr3R 31897985 31898014 6 139 1.0 2.0 1.5 2.4 169 chr3R 31897845 intron heph - chr3R 31897930 intron heph - chr3R 31898014 intron heph - chr3R_6_31895001 chr3R_31895001 RAL-73 1152 chr3R 31911676 31911713 chr3R 31911762 31911799 7 86 0.5 1.0 0.8 3.9 123 chr3R 31911676 intron heph - chr3R 31911738 intron heph - chr3R 31911799 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-73 1153 chr3R 31930558 31930593 chr3R 31930640 31930675 18 82 3.0 5.5 4.2 3.5 117 chr3R 31930558 intron heph - chr3R 31930616 intron heph - chr3R 31930675 intron heph - chr3R_18_31930001 chr3R_31930001 RAL-73 1154 chr3R 31998003 31998021 chr3R 32005472 32005491 blood 7 7470 0.5 1.5 1.0 3.5 7488 chr3R 31998003 intron heph - chr3R 32001747 intron heph - chr3R 32005491 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-73 1155 chr3R 32034259 32034280 chr3R 32034342 32034363 11 83 3.0 0.5 1.8 3.9 104 chr3R 32034259 intergenic not near genes chr3R 32034311 intergenic not near genes chr3R 32034363 intergenic not near genes chr3R_11_32030001 chr3R_32030001 RAL-73 1156 chr4 671617 671636 chr4 680199 680216 Tirant 6 8582 0.5 1.0 0.8 3.3 8599 chr4 671617 intron CG11360 + chr4 675916 intron CG11360 + chr4 680216 intron CG11360 + chr4_6_675001 chr4_675001 RAL-73 1157 chrX 295860 295882 chrX 303479 303501 412 6 7619 1.0 1.0 1.0 3.0 7641 chrX 295860 intron CG3777 + chrX 299680 intron CG3777 + chrX 303501 intron CG3777 + chrX_6_295001 chrX_295001 RAL-73 1158 chrX 551421 551454 chrX 558983 559016 412 8 7562 2.5 3.5 3.0 2.0 7595 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559016 intron Appl + chrX_8_555001 chrX_555001 RAL-73 1159 chrX 611138 611160 chrX 611228 611250 4 90 2.0 3.0 2.5 1.1 112 chrX 611138 intron CG13366 - chrX 611194 intron CG13366 - chrX 611250 intron CG13366 - chrX_4_610001 chrX_610001 RAL-73 1160 chrX 670267 670294 chrX 670347 670374 9 79 0.0 1.0 0.5 6.0 107 chrX 670267 intergenic not near genes chrX 670320 intergenic not near genes chrX 670374 intergenic not near genes chrX_9_670001 chrX_670001 RAL-73 1161 chrX 680841 680868 chrX 680924 680951 7 80 0.5 1.0 0.8 3.9 110 chrX 680841 intergenic not near genes chrX 680896 intergenic not near genes chrX 680951 intergenic not near genes chrX_7_680001 chrX_680001 RAL-73 1162 chrX 802285 802320 chrX 802362 802397 11 75 3.5 2.5 3.0 2.8 112 chrX 802285 exon CG13359 - chrX 802341 exon CG13359 - chrX 802397 exon CG13359 - chrX_11_800001 chrX_800001 RAL-73 1163 chrX 827600 827635 chrX 835392 835427 roo 5 7792 3.0 1.5 2.2 1.6 7827 chrX 827600 intron CG43867 - chrX 831514 intron CG43867 - chrX 835427 intron CG43867 - chrX_5_830001 chrX_830001 RAL-73 1164 chrX 906702 906732 chrX 908491 908518 S-element 16 1789 2.5 5.5 4.0 3.2 1816 chrX 906702 intron CG43867 - chrX 907610 intron CG43867 - chrX 908518 intron CG43867 - chrX_16_905001 chrX_905001 RAL-73 1165 chrX 1051069 1051091 chrX 1051147 1051169 6 77 4.5 4.0 4.2 1.2 100 chrX 1051069 intron CR44779 + chrX 1051119 intron CR44779 + chrX 1051169 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-73 1166 chrX 1253733 1253759 chrX 1253813 1253841 7 82 1.5 1.5 1.5 2.8 108 chrX 1253733 intron Atf3 - chrX 1253787 intron Atf3 - chrX 1253841 intron Atf3 - chrX_7_1250001 chrX_1250001 RAL-73 1167 chrX 1627976 1628002 chrX 1635444 1635464 gtwin 14 7467 4.5 4.0 4.2 2.7 7488 chrX 1627976 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635464 intron,intron Mur2B -,br + chrX_14_1630001 chrX_1630001 RAL-73 1168 chrX 1923424 1923454 chrX 1923508 1923538 10 82 5.0 4.5 4.8 1.7 114 chrX 1923424 5` UTR Ocrl + chrX 1923481 5` UTR Ocrl + chrX 1923538 5` UTR Ocrl + chrX_10_1920001 chrX_1920001 RAL-73 1169 chrX 1954888 1954916 chrX 1962828 1962855 Stalker2 4 7939 3.0 3.0 3.0 1.0 7967 chrX 1954888 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962855 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-73 1170 chrX 2142156 2142182 chrX 2142234 2142260 4 78 0.5 2.5 1.5 1.6 104 chrX 2142156 intron CG3835 + chrX 2142208 intron CG3835 + chrX 2142260 intron CG3835 + chrX_4_2140001 chrX_2140001 RAL-73 1171 chrX 2399855 2399864 chrX 2408190 2408192 roo 6 8338 3.0 0.5 1.8 2.1 8337 chrX 2399855 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408192 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-73 1172 chrX 2440194 2440230 chrX 2440289 2440325 17 93 2.5 5.0 3.8 3.5 131 chrX 2440194 intergenic not near genes chrX 2440260 intergenic not near genes chrX 2440325 intergenic not near genes chrX_17_2440001 chrX_2440001 RAL-73 1173 chrX 2535822 2535845 chrX 2535898 2535921 7 76 2.5 2.0 2.2 2.2 99 chrX 2535822 intron trol - chrX 2535872 intron trol - chrX 2535921 intron trol - chrX_7_2535001 chrX_2535001 RAL-73 1174 chrX 2544026 2544052 chrX 2544363 2544390 6 338 2.5 4.5 3.5 1.3 364 chrX 2544026 intron trol - chrX 2544208 intron trol - chrX 2544390 intron trol - chrX_6_2540001 chrX_2540001 RAL-73 1175 chrX 2578816 2578844 chrX 2578907 2578936 7 92 1.5 1.0 1.2 3.2 120 chrX 2578816 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-73 1176 chrX 2803498 2803528 chrX 2803641 2803670 4 143 0.0 2.5 1.2 1.8 172 chrX 2803498 intron kirre + chrX 2803584 intron kirre + chrX 2803670 intron kirre + chrX_4_2800001 chrX_2800001 RAL-73 1177 chrX 2854241 2854272 chrX 2854347 2854378 7 106 1.5 3.0 2.2 2.2 137 chrX 2854241 intron kirre + chrX 2854310 intron kirre + chrX 2854378 intron kirre + chrX_7_2850001 chrX_2850001 RAL-73 1178 chrX 2958594 2958614 chrX 2958697 2958717 4 103 2.0 0.5 1.2 1.8 123 chrX 2958594 intron,intron kirre +,rst - chrX 2958656 intron,intron kirre +,rst - chrX 2958717 intron,intron kirre +,rst - chrX_4_2955001 chrX_2955001 RAL-73 1179 chrX 3058033 3058047 chrX 3058274 3058288 pogo 4 241 0.0 0.5 0.2 3.3 255 chrX 3058033 intron kirre + chrX 3058160 intron kirre + chrX 3058288 intron kirre + chrX_4_3055001 chrX_3055001 RAL-73 1180 chrX 3239749 3239773 chrX 3240707 3240731 5 958 1.0 1.0 1.0 2.5 982 chrX 3239749 intron dnc + chrX 3240240 intron,exon dnc +,ng2 - chrX 3240731 intron dnc + chrX_5_3240001 chrX_3240001 RAL-73 1181 chrX 3459984 3460014 chrX 3460061 3460091 4 76 4.5 0.0 2.2 1.2 107 chrX 3459984 intron,intron CR44999 +,CG16782 - chrX 3460038 intron,5` UTR CR44999 +,CG16782 - chrX 3460091 intron,5` UTR CR44999 +,CG16782 - chrX_4_3460001 chrX_3460001 RAL-73 1182 chrX 3493093 3493100 chrX 3502252 3502259 roo 5 9159 6.0 2.0 4.0 1.0 9166 chrX 3493093 intron,intron CR44999 +,Gas8 - chrX 3497676 intron,intron CR44999 +,Gas8 - chrX 3502259 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-73 1183 chrX 3597549 3597582 chrX 3619717 3619750 roo 11 22168 3.5 1.5 2.5 3.1 22201 chrX 3597549 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-73 1184 chrX 3630546 3630573 chrX 3630620 3630649 5 75 0.5 2.0 1.2 2.3 103 chrX 3630546 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-73 1185 chrX 3891145 3891160 chrX 3891262 3891277 8 118 3.0 2.5 2.8 2.1 132 chrX 3891145 intergenic CG42541 - chrX 3891211 intergenic CG42541 - chrX 3891277 intergenic CG42541 - chrX_8_3890001 chrX_3890001 RAL-73 1186 chrX 3986870 3986881 chrX 3994502 3994513 412 6 7632 2.0 1.5 1.8 2.1 7643 chrX 3986870 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994513 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-73 1187 chrX 4048506 4048521 chrX 4048582 4048597 4 76 2.0 2.0 2.0 1.3 91 chrX 4048506 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048597 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-73 1188 chrX 4530145 4530176 chrX 4530247 4530278 6 102 2.0 2.5 2.2 1.9 133 chrX 4530145 intron CR32773 - chrX 4530212 intron CR32773 - chrX 4530278 intron,5` UTR CR32773 -,CG3556 + chrX_6_4530001 chrX_4530001 RAL-73 1189 chrX 4731821 4731850 chrX 4736914 4736917 jockey 9 5090 4.0 3.5 3.8 1.9 5096 chrX 4731821 intergenic not near genes chrX 4734369 intergenic not near genes chrX 4736917 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-73 1190 chrX 4763249 4763282 chrX 4763737 4763770 Stalker4 5 488 2.0 1.0 1.5 2.0 521 chrX 4763249 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763770 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-73 1191 chrX 4827977 4827992 chrX 4835348 4835351 Stalker4 4 7368 2.5 4.0 3.2 1.0 7374 chrX 4827977 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835351 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-73 1192 chrX 4827995 4828001 chrX 4835347 4835372 Stalker4 5 7364 2.5 4.0 3.2 1.2 7377 chrX 4827995 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835372 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-73 1193 chrX 4856142 4856149 chrX 4856220 4856227 4 78 3.5 3.5 3.5 0.9 85 chrX 4856142 intron CG42594 + chrX 4856184 intron CG42594 + chrX 4856227 intron CG42594 + chrX_4_4855001 chrX_4855001 RAL-73 1194 chrX 4965556 4965588 chrX 4965636 4965668 6 80 3.0 2.5 2.8 1.6 112 chrX 4965556 intron CR44833 - chrX 4965612 intron CR44833 - chrX 4965668 intron CR44833 - chrX_6_4965001 chrX_4965001 RAL-73 1195 chrX 5170657 5170688 chrX 5170940 5170970 12 282 3.5 3.0 3.2 2.9 313 chrX 5170657 intron,intron CG15465 +,rg + chrX 5170814 intron,intron CG15465 +,rg + chrX 5170970 intron,intron CG15465 +,rg + chrX_12_5170001 chrX_5170001 RAL-73 1196 chrX 5441992 5442018 chrX 5442096 5442124 5 104 1.0 1.5 1.2 2.3 132 chrX 5441992 intergenic not near genes chrX 5442058 intergenic not near genes chrX 5442124 intergenic not near genes chrX_5_5440001 chrX_5440001 RAL-73 1197 chrX 5473600 5473609 chrX 5473676 5473685 4 76 2.5 4.0 3.2 1.0 85 chrX 5473600 intron SPR + chrX 5473642 intron SPR + chrX 5473685 intron SPR + chrX_4_5470001 chrX_5470001 RAL-73 1198 chrX 5792576 5792751 chrX 5792709 5792791 5 99 3.5 4.0 3.8 1.0 215 chrX 5792576 exon CG12239 + chrX 5792684 exon CG12239 + chrX 5792791 exon CG12239 + chrX_5_5790001 chrX_5790001 RAL-73 1199 chrX 5883815 5883836 chrX 5884055 5884077 pogo 4 241 1.5 0.0 0.8 2.2 262 chrX 5883815 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884077 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-73 1200 chrX 6382753 6382785 chrX 6382832 6382862 10 77 1.0 4.5 2.8 2.6 109 chrX 6382753 intergenic not near genes chrX 6382808 intergenic not near genes chrX 6382862 intergenic not near genes chrX_10_6380001 chrX_6380001 RAL-73 1201 chrX 6392869 6392904 chrX 6397634 6397669 Doc 9 4764 2.5 0.5 1.5 3.6 4800 chrX 6392869 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397669 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-73 1202 chrX 6562820 6562846 chrX 6571298 6571328 Tirant 10 8480 5.0 7.0 6.0 1.4 8508 chrX 6562820 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571328 intron CG34417 + chrX_10_6565001 chrX_6565001 RAL-73 1203 chrX 6737521 6737552 chrX 6737603 6737634 10 82 0.5 3.0 1.8 3.6 113 chrX 6737521 intron CG3168 - chrX 6737578 intron CG3168 - chrX 6737634 intron CG3168 - chrX_10_6735001 chrX_6735001 RAL-73 1204 chrX 6896219 6896227 chrX 6896300 6896308 5 81 1.0 2.0 1.5 2.0 89 chrX 6896219 intergenic not near genes chrX 6896264 intergenic not near genes chrX 6896308 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-73 1205 chrX 6897585 6897704 chrX 6897663 6897814 4 102 1.0 1.0 1.0 2.0 229 chrX 6897585 intergenic not near genes chrX 6897700 intergenic not near genes chrX 6897814 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-73 1206 chrX 7023602 7023634 chrX 7030991 7031024 Tabor 10 7390 1.0 2.5 1.8 3.6 7422 chrX 7023602 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031024 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-73 1207 chrX 7125256 7125274 chrX 7134415 7134433 roo 4 9159 0.5 3.0 1.8 1.4 9177 chrX 7125256 intergenic not near genes chrX 7129844 intergenic not near genes chrX 7134433 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-73 1208 chrX 8015216 8015243 chrX 8015302 8015329 6 86 1.0 1.0 1.0 3.0 113 chrX 8015216 intron Tbh + chrX 8015272 intron Tbh + chrX 8015329 intron Tbh + chrX_6_8015001 chrX_8015001 RAL-73 1209 chrX 8031428 8031448 chrX 8035737 8035757 Juan 5 4309 2.0 3.0 2.5 1.4 4329 chrX 8031428 intergenic not near genes chrX 8033592 intergenic not near genes chrX 8035757 3` UTR CG2233 - chrX_5_8030001 chrX_8030001 RAL-73 1210 chrX 8092298 8092314 chrX 8092383 8092399 4 85 1.0 0.5 0.8 2.2 101 chrX 8092298 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092399 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-73 1211 chrX 8922326 8922346 chrX 8922760 8922780 jockey 9 434 5.0 0.5 2.8 2.4 454 chrX 8922326 intron rdgA + chrX 8922553 intron rdgA + chrX 8922780 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-73 1212 chrX 9129479 9129513 chrX 9129565 9129599 16 86 3.0 2.5 2.8 4.2 120 chrX 9129479 intron fend - chrX 9129539 intron fend - chrX 9129599 intron fend - chrX_16_9125001 chrX_9125001 RAL-73 1213 chrX 9312424 9312450 chrX 9312499 9312522 15 77 3.5 6.0 4.8 2.6 98 chrX 9312424 intergenic not near genes chrX 9312473 intergenic not near genes chrX 9312522 intergenic not near genes chrX_15_9310001 chrX_9310001 RAL-73 1214 chrX 9337940 9337973 chrX 9338032 9338065 7 91 2.0 4.5 3.2 1.7 125 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338065 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-73 1215 chrX 9508134 9508156 chrX 9509652 9509674 jockey 4 1518 1.5 1.5 1.5 1.6 1540 chrX 9508134 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509674 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-73 1216 chrX 9575790 9575812 chrX 9576114 9576136 mdg3 9 324 2.5 2.0 2.2 2.8 346 chrX 9575790 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576136 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-73 1217 chrX 9617004 9617035 chrX 9617081 9617081 5 66 0.5 0.0 0.2 4.2 77 chrX 9617004 intron CG42797 + chrX 9617042 intron CG42797 + chrX 9617081 intron CG42797 + chrX_5_9615001 chrX_9615001 RAL-73 1218 chrX 9875810 9875845 chrX 9875891 9875927 6 82 1.5 2.0 1.8 2.1 117 chrX 9875810 exon CG15247 - chrX 9875868 5` UTR CG15247 - chrX 9875927 5` UTR CG15247 - chrX_6_9875001 chrX_9875001 RAL-73 1219 chrX 9923400 9923420 chrX 9923491 9923511 5 91 2.5 4.5 3.5 1.1 111 chrX 9923400 intergenic not near genes chrX 9923456 intergenic not near genes chrX 9923511 intergenic not near genes chrX_5_9920001 chrX_9920001 RAL-73 1220 chrX 10138227 10138245 chrX 10145731 10145749 412 4 7504 1.5 2.5 2.0 1.3 7522 chrX 10138227 intron,intron RhoU +,CR44894 - chrX 10141988 intron,intron RhoU +,CR44894 - chrX 10145749 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-73 1221 chrX 10154285 10154308 chrX 10154361 10154384 4 76 1.5 2.0 1.8 1.4 99 chrX 10154285 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154384 intron,exon CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-73 1222 chrX 10539250 10539263 chrX 10539333 10539346 5 83 1.5 3.0 2.2 1.6 96 chrX 10539250 intron spri - chrX 10539298 intron spri - chrX 10539346 intron spri - chrX_5_10535001 chrX_10535001 RAL-73 1223 chrX 10550855 10550889 chrX 10552322 10552356 hobo 8 1467 2.5 1.5 2.0 2.7 1501 chrX 10550855 intron spri - chrX 10551606 intron spri - chrX 10552356 intron spri - chrX_8_10550001 chrX_10550001 RAL-73 1224 chrX 10638614 10638639 chrX 10638825 10638849 8 212 11.5 25.0 18.2 0.4 235 chrX 10638614 intron X11Lbeta + chrX 10638732 intron X11Lbeta + chrX 10638849 intron X11Lbeta + chrX_8_10635001 chrX_10635001 RAL-73 1225 chrX 11141976 11141984 chrX 11142052 11142060 4 76 6.5 0.0 3.2 1.0 84 chrX 11141976 intergenic CG15199 - chrX 11142018 intergenic CG15199 - chrX 11142060 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-73 1226 chrX 11194449 11194460 chrX 11201870 11201881 gypsy5 5 7421 0.0 7.0 3.5 1.1 7432 chrX 11194449 intergenic not near genes chrX 11198165 intergenic not near genes chrX 11201881 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-73 1227 chrX 11268563 11268595 chrX 11270056 11270088 hopper2 11 1493 3.0 5.0 4.0 2.2 1525 chrX 11268563 intron CG44422 - chrX 11269326 intron CG44422 - chrX 11270088 intron CG44422 - chrX_11_11265001 chrX_11265001 RAL-73 1228 chrX 11312067 11312090 chrX 11319420 11319440 Stalker2 5 7352 1.0 1.5 1.2 2.3 7373 chrX 11312067 intergenic not near genes chrX 11315754 intergenic not near genes chrX 11319440 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-73 1229 chrX 11633420 11633446 chrX 11640474 11640500 297 4 7054 1.0 1.0 1.0 2.0 7080 chrX 11633420 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640500 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-73 1230 chrX 12272848 12272871 chrX 12272927 12272950 4 79 0.0 0.5 0.2 3.3 102 chrX 12272848 intron Ten-a + chrX 12272899 intron Ten-a + chrX 12272950 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-73 1231 chrX 12348561 12348588 chrX 12348719 12348741 8 153 1.0 2.0 1.5 3.2 180 chrX 12348561 intergenic not near genes chrX 12348651 intergenic not near genes chrX 12348741 intergenic not near genes chrX_8_12345001 chrX_12345001 RAL-73 1232 chrX 12375492 12375499 chrX 12375590 12375597 7 98 2.5 4.5 3.5 1.6 105 chrX 12375492 intergenic Ir11a - chrX 12375544 intergenic Ir11a - chrX 12375597 exon Ir11a - chrX_7_12375001 chrX_12375001 RAL-73 1233 chrX 12533813 12533824 chrX 12533889 12533900 5 76 0.0 2.5 1.2 2.3 87 chrX 12533813 intron CG43921 - chrX 12533856 intron CG43921 - chrX 12533900 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-73 1234 chrX 12752280 12752308 chrX 12752367 12752395 5 87 0.5 2.0 1.2 2.3 115 chrX 12752280 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752395 5` UTR CR44619 + chrX_5_12750001 chrX_12750001 RAL-73 1235 chrX 12839921 12839948 chrX 12840246 12840274 5 322 1.0 0.5 0.8 2.8 353 chrX 12839921 intron Pde9 - chrX 12840098 intron Pde9 - chrX 12840274 intron Pde9 - chrX_5_12840001 chrX_12840001 RAL-73 1236 chrX 13061357 13061375 chrX 13061468 13061486 7 111 0.5 3.0 1.8 2.5 129 chrX 13061357 intron rad + chrX 13061422 intron rad + chrX 13061486 intron rad + chrX_7_13060001 chrX_13060001 RAL-73 1237 chrX 13161697 13161720 chrX 13161774 13161797 4 77 0.5 1.5 1.0 2.0 100 chrX 13161697 3` UTR CG12096 + chrX 13161747 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161797 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-73 1238 chrX 13172348 13172383 chrX 13172424 13172459 10 76 1.5 0.0 0.8 5.6 111 chrX 13172348 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172459 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-73 1239 chrX 13210047 13210061 chrX 13210146 13210160 4 99 3.5 1.0 2.2 1.2 113 chrX 13210047 intron sno - chrX 13210104 intron sno - chrX 13210160 intron sno - chrX_4_13210001 chrX_13210001 RAL-73 1240 chrX 13300713 13300734 chrX 13300789 13300810 5 76 1.5 5.0 3.2 1.2 97 chrX 13300713 intron CG1764 - chrX 13300762 intron CG1764 - chrX 13300810 intron CG1764 - chrX_5_13300001 chrX_13300001 RAL-73 1241 chrX 13754431 13754462 chrX 13754521 13754554 7 92 1.5 4.0 2.8 1.8 123 chrX 13754431 intron Pdcd4 - chrX 13754492 intron Pdcd4 - chrX 13754554 intron Pdcd4 - chrX_7_13750001 chrX_13750001 RAL-73 1242 chrX 13875968 13875987 chrX 13876052 13876071 6 83 0.0 0.0 0.0 6.0 103 chrX 13875968 intron mamo - chrX 13876020 intron mamo - chrX 13876071 intron mamo - chrX_6_13875001 chrX_13875001 RAL-73 1243 chrX 13908799 13908805 chrX 13908875 13908883 5 77 4.0 5.0 4.5 0.9 84 chrX 13908799 intron mamo - chrX 13908841 intron mamo - chrX 13908883 intron mamo - chrX_5_13905001 chrX_13905001 RAL-73 1244 chrX 13943273 13943300 chrX 13943364 13943391 8 91 0.0 4.5 2.2 2.5 118 chrX 13943273 intron mamo - chrX 13943332 intron mamo - chrX 13943391 intron mamo - chrX_8_13940001 chrX_13940001 RAL-73 1245 chrX 14105024 14105046 chrX 14114175 14114197 roo 6 9151 3.0 3.5 3.2 1.4 9173 chrX 14105024 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114197 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-73 1246 chrX 14189882 14189893 chrX 14189970 14189986 4 92 1.5 4.5 3.0 1.0 104 chrX 14189882 exon CG11585 + chrX 14189934 exon CG11585 + chrX 14189986 exon CG11585 + chrX_4_14185001 chrX_14185001 RAL-73 1247 chrX 14296462 14296476 chrX 14296538 14296552 4 76 3.5 1.0 2.2 1.2 90 chrX 14296462 intergenic not near genes chrX 14296507 intergenic not near genes chrX 14296552 intergenic not near genes chrX_4_14295001 chrX_14295001 RAL-73 1248 chrX 14333300 14333318 chrX 14333372 14333398 5 76 0.0 1.5 0.8 2.8 98 chrX 14333300 intron dpr8 + chrX 14333349 intron dpr8 + chrX 14333398 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-73 1249 chrX 14353440 14353468 chrX 14353521 14353547 6 80 1.0 3.5 2.2 1.9 107 chrX 14353440 intron dpr8 + chrX 14353494 intron dpr8 + chrX 14353547 intron dpr8 + chrX_6_14350001 chrX_14350001 RAL-73 1250 chrX 14416312 14416333 chrX 14421079 14421100 F-element 4 4767 0.5 1.0 0.8 2.2 4788 chrX 14416312 intron dpr8 + chrX 14418706 intron dpr8 + chrX 14421100 intron dpr8 + chrX_4_14415001 chrX_14415001 RAL-73 1251 chrX 14560268 14560301 chrX 14560352 14560385 7 84 1.5 0.5 1.0 3.5 117 chrX 14560268 intergenic not near genes chrX 14560326 intergenic not near genes chrX 14560385 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-73 1252 chrX 14636461 14636485 chrX 14641902 14641926 I-element 7 5441 3.0 2.0 2.5 2.0 5465 chrX 14636461 intron NetA - chrX 14639194 intron NetA - chrX 14641926 intron NetA - chrX_7_14635001 chrX_14635001 RAL-73 1253 chrX 14818762 14818782 chrX 14823966 14823985 copia 8 5202 4.0 1.5 2.8 2.1 5223 chrX 14818762 intron rut - chrX 14821374 intron rut - chrX 14823985 intron rut - chrX_8_14820001 chrX_14820001 RAL-73 1254 chrX 14895275 14895291 chrX 14895353 14895369 6 78 1.5 2.0 1.8 2.1 94 chrX 14895275 intron,intron Flo2 +,CG9514 - chrX 14895322 intron,intron Flo2 +,CG9514 - chrX 14895369 intron,intron Flo2 +,CG9514 - chrX_6_14895001 chrX_14895001 RAL-73 1255 chrX 15116909 15116936 chrX 15117026 15117053 4 117 0.0 0.0 0.0 4.0 144 chrX 15116909 intergenic Cyp4s3 - chrX 15116981 intergenic Cyp4s3 - chrX 15117053 intergenic not near genes chrX_4_15115001 chrX_15115001 RAL-73 1256 chrX 15123296 15123315 chrX 15123415 15123442 7 123 2.0 3.5 2.8 1.8 146 chrX 15123296 intergenic not near genes chrX 15123369 intergenic not near genes chrX 15123442 intergenic not near genes chrX_7_15120001 chrX_15120001 RAL-73 1257 chrX 15413050 15413082 chrX 15417352 15417384 Juan 8 4302 3.0 3.0 3.0 2.0 4334 chrX 15413050 intron Cngl - chrX 15415217 intron Cngl - chrX 15417384 intron Cngl - chrX_8_15415001 chrX_15415001 RAL-73 1258 chrX 15543277 15543299 chrX 15543356 15543380 4 80 2.0 2.0 2.0 1.3 103 chrX 15543277 intron Ac13E - chrX 15543328 intron Ac13E - chrX 15543380 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-73 1259 chrX 15659383 15659411 chrX 15659461 15659488 4 76 2.5 3.5 3.0 1.0 105 chrX 15659383 intergenic not near genes chrX 15659436 intergenic not near genes chrX 15659488 intergenic not near genes chrX_4_15655001 chrX_15655001 RAL-73 1260 chrX 15678052 15678068 chrX 15678129 15678145 4 77 2.5 1.5 2.0 1.3 93 chrX 15678052 intergenic CG12708 + chrX 15678098 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-73 1261 chrX 15924571 15924596 chrX 15924661 15924686 7 90 4.0 1.5 2.8 1.8 115 chrX 15924571 intergenic CG8916 + chrX 15924628 intergenic CG8916 +,Lcch3 + chrX 15924686 intergenic CG8916 +,Lcch3 + chrX_7_15920001 chrX_15920001 RAL-73 1262 chrX 16329436 16329445 chrX 16329517 16329527 8 83 0.0 8.0 4.0 1.6 91 chrX 16329436 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329527 exon CG9919 - chrX_8_16325001 chrX_16325001 RAL-73 1263 chrX 16689627 16689653 chrX 16689713 16689716 8 80 3.5 2.5 3.0 2.0 89 chrX 16689627 intron Sep4 - chrX 16689672 intron Sep4 - chrX 16689716 intron Sep4 - chrX_8_16685001 chrX_16685001 RAL-73 1264 chrX 16716109 16716132 chrX 16716342 16716365 4 233 1.0 1.5 1.2 1.8 256 chrX 16716109 intron CG34325 - chrX 16716237 intron CG34325 - chrX 16716365 intron CG34325 - chrX_4_16715001 chrX_16715001 RAL-73 1265 chrX 16785285 16785304 chrX 16785389 16785408 4 104 0.5 2.5 1.5 1.6 123 chrX 16785285 3` UTR CG9609 - chrX 16785346 3` UTR CG9609 - chrX 16785408 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-73 1266 chrX 16821562 16821593 chrX 16821661 16821692 6 96 0.5 1.5 1.0 3.0 130 chrX 16821562 intron CG4829 + chrX 16821627 intron CG4829 + chrX 16821692 intron CG4829 + chrX_6_16820001 chrX_16820001 RAL-73 1267 chrX 17011964 17011987 chrX 17012047 17012070 5 83 3.0 2.0 2.5 1.4 106 chrX 17011964 intron CG45002 - chrX 17012017 intron CG45002 - chrX 17012070 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-73 1268 chrX 17122637 17122667 chrX 17122728 17122758 10 90 3.0 2.0 2.5 2.9 121 chrX 17122637 intron CG5004 + chrX 17122698 intron CG5004 + chrX 17122758 intron CG5004 + chrX_10_17120001 chrX_17120001 RAL-73 1269 chrX 17282874 17282897 chrX 17282952 17282975 6 78 4.5 0.0 2.2 1.9 101 chrX 17282874 intron CG5445 + chrX 17282924 5` UTR CG5445 + chrX 17282975 5` UTR CG5445 + chrX_6_17280001 chrX_17280001 RAL-73 1270 chrX 17352591 17352619 chrX 17352694 17352722 6 103 0.0 1.0 0.5 4.0 131 chrX 17352591 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352722 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-73 1271 chrX 17556942 17556959 chrX 17557440 17557458 mdg1 7 499 5.5 1.5 3.5 1.6 516 chrX 17556942 intron CG43658 - chrX 17557200 intron CG43658 - chrX 17557458 intron CG43658 - chrX_7_17555001 chrX_17555001 RAL-73 1272 chrX 17680891 17680922 chrX 17680966 17680999 7 77 2.5 2.5 2.5 2.0 108 chrX 17680891 intron chas - chrX 17680945 intron chas - chrX 17680999 intron chas - chrX_7_17680001 chrX_17680001 RAL-73 1273 chrX 17743284 17743305 chrX 17743376 17743397 6 92 2.0 2.0 2.0 2.0 113 chrX 17743284 intron CG42684 + chrX 17743340 intron CG42684 + chrX 17743397 intron CG42684 + chrX_6_17740001 chrX_17740001 RAL-73 1274 chrX 18093659 18093691 chrX 18093866 18093898 8 207 2.5 5.0 3.8 1.7 239 chrX 18093659 5` UTR RhoGAP16F + chrX 18093778 5` UTR RhoGAP16F + chrX 18093898 5` UTR RhoGAP16F + chrX_8_18090001 chrX_18090001 RAL-73 1275 chrX 18127938 18127964 chrX 18128023 18128049 5 84 1.0 3.5 2.2 1.6 111 chrX 18127938 intergenic mir-210 + chrX 18127994 intergenic mir-210 + chrX 18128049 intergenic mir-210 + chrX_5_18125001 chrX_18125001 RAL-73 1276 chrX 18194065 18194098 chrX 18194600 18194633 BS 6 535 2.0 0.5 1.2 2.7 568 chrX 18194065 intron Frq2 + chrX 18194349 intron Frq2 + chrX 18194633 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-73 1277 chrX 18205379 18205390 chrX 18206099 18206110 4 720 0.5 3.0 1.8 1.4 731 chrX 18205379 intergenic Her - chrX 18205744 intergenic not near genes chrX 18206110 intergenic not near genes chrX_4_18205001 chrX_18205001 RAL-73 1278 chrX 18427387 18427401 chrX 18427798 18427810 6 411 2.5 2.5 2.5 1.7 423 chrX 18427387 intergenic CG42323 + chrX 18427598 intergenic not near genes chrX 18427810 intergenic not near genes chrX_6_18425001 chrX_18425001 RAL-73 1279 chrX 18490046 18490057 chrX 18490201 18490211 7 154 4.0 6.5 5.2 1.1 165 chrX 18490046 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490211 intergenic not near genes chrX_7_18490001 chrX_18490001 RAL-73 1280 chrX 18558782 18558802 chrX 18558864 18558884 4 82 2.0 2.0 2.0 1.3 102 chrX 18558782 intron Bx + chrX 18558833 intron Bx + chrX 18558884 intron Bx + chrX_4_18555001 chrX_18555001 RAL-73 1281 chrX 18774447 18774463 chrX 18774532 18774548 4 85 2.5 0.5 1.5 1.6 101 chrX 18774447 intergenic CCKLR-17D3 - chrX 18774498 intergenic CCKLR-17D3 - chrX 18774548 intergenic not near genes chrX_4_18770001 chrX_18770001 RAL-73 1282 chrX 19060410 19060431 chrX 19065194 19065215 Doc 4 4784 2.5 1.0 1.8 1.4 4805 chrX 19060410 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065215 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-73 1283 chrX 19106025 19106044 chrX 19106242 19106261 4 217 0.0 2.0 1.0 2.0 236 chrX 19106025 intergenic not near genes chrX 19106143 intergenic not near genes chrX 19106261 intergenic not near genes chrX_4_19105001 chrX_19105001 RAL-73 1284 chrX 19131966 19131999 chrX 19132049 19132082 7 83 1.0 3.0 2.0 2.3 116 chrX 19131966 intergenic not near genes chrX 19132024 intergenic not near genes chrX 19132082 intergenic not near genes chrX_7_19130001 chrX_19130001 RAL-73 1285 chrX 19136553 19136585 chrX 19143473 19143504 412 4 6918 0.0 3.5 1.8 1.4 6951 chrX 19136553 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-73 1286 chrX 19176214 19176240 chrX 19176298 19176324 10 83 2.5 6.5 4.5 1.8 110 chrX 19176214 3` UTR CG7556 - chrX 19176269 3` UTR CG7556 - chrX 19176324 3` UTR CG7556 - chrX_10_19175001 chrX_19175001 RAL-73 1287 chrX 19309659 19309682 chrX 19309737 19309753 6 78 2.5 1.5 2.0 2.0 94 chrX 19309659 intergenic not near genes chrX 19309706 intergenic not near genes chrX 19309753 intergenic not near genes chrX_6_19305001 chrX_19305001 RAL-73 1288 chrX 19318456 19318485 chrX 19318590 19318620 13 135 0.5 4.0 2.2 4.1 164 chrX 19318456 intron out - chrX 19318538 intron out - chrX 19318620 intron out - chrX_13_19315001 chrX_19315001 RAL-73 1289 chrX 19380158 19380187 chrX 19380399 19380416 pogo 4 238 1.5 1.5 1.5 1.6 258 chrX 19380158 intron kek5 + chrX 19380287 intron kek5 + chrX 19380416 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-73 1290 chrX 19446594 19446603 chrX 19446672 19446681 7 78 0.0 4.5 2.2 2.2 87 chrX 19446594 intron kek5 + chrX 19446638 intron kek5 + chrX 19446681 intron kek5 + chrX_7_19445001 chrX_19445001 RAL-73 1291 chrX 19461142 19461175 chrX 19461238 19461271 6 96 0.5 1.0 0.8 3.3 129 chrX 19461142 intron kek5 + chrX 19461206 intron kek5 + chrX 19461271 intron kek5 + chrX_6_19460001 chrX_19460001 RAL-73 1292 chrX 19472132 19472149 chrX 19472702 19472719 jockey 5 570 1.5 4.0 2.8 1.3 587 chrX 19472132 intergenic kek5 + chrX 19472426 intergenic not near genes chrX 19472719 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-73 1293 chrX 19474752 19474785 chrX 19474832 19474864 5 80 2.5 0.0 1.2 2.3 112 chrX 19474752 exon CG32533 - chrX 19474808 intron CG32533 - chrX 19474864 intron CG32533 - chrX_5_19470001 chrX_19470001 RAL-73 1294 chrX 19593946 19593977 chrX 19594031 19594062 10 85 4.0 3.0 3.5 2.2 116 chrX 19593946 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594062 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-73 1295 chrX 19744639 19744651 chrX 19744764 19744777 4 124 16.0 23.0 19.5 0.2 138 chrX 19744639 5` UTR,exon CG33932 +,Rpp20 + chrX 19744708 intron,intron CG33932 +,Rpp20 + chrX 19744777 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-73 1296 chrX 19822830 19822864 chrX 19822997 19823031 8 166 3.5 3.5 3.5 1.8 201 chrX 19822830 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823031 intergenic skpE - chrX_8_19820001 chrX_19820001 RAL-73 1297 chrX 19884098 19884110 chrX 19884174 19884177 4 74 3.0 2.5 2.8 1.1 79 chrX 19884098 intron Hers + chrX 19884138 intron Hers + chrX 19884177 intron Hers + chrX_4_19880001 chrX_19880001 RAL-73 1298 chrX 19992419 19992428 chrX 19992494 19992504 5 76 6.0 10.5 8.2 0.5 85 chrX 19992419 intergenic not near genes chrX 19992462 intergenic not near genes chrX 19992504 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-73 1299 chrX 20052785 20052814 chrX 20052869 20052897 5 83 3.0 0.5 1.8 1.8 112 chrX 20052785 intron Dop2R - chrX 20052841 intron Dop2R - chrX 20052897 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-73 1300 chrX 20144844 20144874 chrX 20145014 20145044 6 170 2.0 2.5 2.2 1.9 200 chrX 20144844 intergenic not near genes chrX 20144944 intergenic not near genes chrX 20145044 intergenic not near genes chrX_6_20140001 chrX_20140001 RAL-73 1301 chrX 20377325 20377348 chrX 20378792 20378815 hobo 14 1466 2.5 6.0 4.2 2.7 1490 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378815 intergenic not near genes chrX_14_20375001 chrX_20375001 RAL-73 1302 chrX 20383796 20383816 chrX 20383897 20383916 11 101 3.0 2.5 2.8 2.9 120 chrX 20383796 intergenic not near genes chrX 20383856 intergenic not near genes chrX 20383916 intergenic not near genes chrX_11_20380001 chrX_20380001 RAL-73 1303 chrX 20384254 20384284 chrX 20384337 20384367 6 83 2.0 0.5 1.2 2.7 113 chrX 20384254 intergenic not near genes chrX 20384310 intergenic not near genes chrX 20384367 intergenic not near genes chrX_6_20380001 chrX_20380001 RAL-73 1304 chrX 20443179 20443191 chrX 20443255 20443267 5 76 3.5 1.5 2.5 1.4 88 chrX 20443179 intron CG1695 + chrX 20443223 intron CG1695 + chrX 20443267 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-73 1305 chrX 20476964 20476970 chrX 20477054 20477060 4 90 5.5 4.5 5.0 0.7 96 chrX 20476964 intron RhoGAP19D - chrX 20477012 intron RhoGAP19D - chrX 20477060 intron RhoGAP19D - chrX_4_20475001 chrX_20475001 RAL-73 1306 chrX 20758105 20758132 chrX 20758196 20758223 6 91 0.0 3.5 1.8 2.1 118 chrX 20758105 intergenic CR44710 + chrX 20758164 intergenic CR44710 + chrX 20758223 intergenic CR44710 + chrX_6_20755001 chrX_20755001 RAL-73 1307 chrX 20915051 20915067 chrX 20915222 20915238 5 171 0.0 3.5 1.8 1.8 187 chrX 20915051 intron shakB - chrX 20915144 intron shakB - chrX 20915238 intron shakB - chrX_5_20915001 chrX_20915001 RAL-73 1308 chrX 20940721 20940747 chrX 20942190 20942216 hobo 8 1469 2.0 3.5 2.8 2.1 1495 chrX 20940721 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942216 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-73 1309 chrX 20947843 20947876 chrX 20947935 20947968 11 91 0.5 2.0 1.2 5.0 125 chrX 20947843 intergenic not near genes chrX 20947906 intergenic not near genes chrX 20947968 intergenic not near genes chrX_11_20945001 chrX_20945001 RAL-73 1310 chrX 21042568 21042593 chrX 21045358 21045378 10 2786 21.5 18.0 19.8 0.5 2810 chrX 21042568 exon Mgstl + chrX 21043973 exon,3` UTR Mgstl +,CR44431 - chrX 21045378 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-73 1311 chrX 21264737 21264761 chrX 21264813 21264837 6 76 1.0 2.5 1.8 2.1 100 chrX 21264737 intron CG32521 - chrX 21264787 intron CG32521 - chrX 21264837 intron CG32521 - chrX_6_21260001 chrX_21260001 RAL-73 1312 chrX 21327204 21327239 chrX 21327296 21327330 16 89 2.0 4.0 3.0 4.0 126 chrX 21327204 exon CG1486 + chrX 21327267 exon CG1486 + chrX 21327330 exon CG1486 + chrX_16_21325001 chrX_21325001 RAL-73 1313 chrX 21428342 21428361 chrX 21428532 21428551 6 190 1.0 0.5 0.8 3.3 209 chrX 21428342 intron CG42343 - chrX 21428446 intron CG42343 - chrX 21428551 intron CG42343 - chrX_6_21425001 chrX_21425001 RAL-73 1314 chrX 21516988 21517018 chrX 21517067 21517097 6 79 2.0 1.5 1.8 2.1 109 chrX 21516988 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517097 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-73 1315 chrX 22522640 22522659 chrX 22525460 22525479 NOF 5 2820 3.0 0.0 1.5 2.0 2839 chrX 22522640 intron CG17600 + chrX 22524060 intron CG17600 + chrX 22525479 intron CG17600 + chrX_5_22520001 chrX_22520001 RAL-73 1316 chrX 22697021 22697050 chrX 22697137 22697166 5 116 2.5 2.0 2.2 1.6 145 chrX 22697021 intron CR44997 + chrX 22697094 intron CR44997 + chrX 22697166 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-73 1317 chrX 22798772 22798784 chrX 22798889 22798901 4 117 3.5 2.5 3.0 1.0 129 chrX 22798772 intergenic not near genes chrX 22798836 intergenic not near genes chrX 22798901 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-73 1318 chrX 22870894 22870901 chrX 22870965 22870992 5 87 1.5 3.5 2.5 1.4 98 chrX 22870894 intron,3` UTR CG42346 +,CR43656 - chrX 22870943 intron,3` UTR CG42346 +,CR43656 - chrX 22870992 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-73 1319 chrX 22922521 22922552 chrX 22922601 22922632 5 80 0.5 1.0 0.8 2.8 111 chrX 22922521 intergenic not near genes chrX 22922576 intergenic not near genes chrX 22922632 intergenic not near genes chrX_5_22920001 chrX_22920001 RAL-73 1320 chrY 975795 975825 chrY 975874 975911 8 91 167.5 187.5 177.5 0.0 116 chrY 975795 intergenic not near genes chrY 975853 intergenic not near genes chrY 975911 intergenic not near genes chrY_8_975001 chrY_975001 RAL-73