SV#	Chr	Chr_coord_5p	Chr_coord_3p	TE	TE_coord_start	TE_coord_end	Reads_collapsed	Chr_Coord_Dist	Symmetry	avg_blat_score	Norm_RefGen_Reads	Coverage_Ratio	classification	comments	insert_code	loci_code	Sym_score	libname
1	chr2L	70905	70984	roo	8666	409	20	79	'6-14	67.52	6.9	2.5	3` UTR	dbr +	chr2L_20_70001	chr2L_70001	0.30	RAL-738
2	chr2L	115205	115273	gypsy	6986	7439	27	68	'14-13	65.01	8.4	2.9	intron	CG11455 +	chr2L_27_115001	chr2L_115001	0.52	RAL-738
3	chr2L	222110	222180	P-element	2880	2886	8	70	'4-4	52.39	12.4	0.6	intron	kis -	chr2L_8_220001	chr2L_220001	0.50	RAL-738
4	chr2L	633907	633981	roo	404	2	20	74	'12-8	65.38	7.0	2.5	intergenic	not near genes	chr2L_20_630001	chr2L_630001	0.60	RAL-738
5	chr2L	769975	770061	roo	414	8664	22	86	'9-13	67.57	6.6	2.9	intergenic	not near genes	chr2L_22_765001	chr2L_765001	0.41	RAL-738
6	chr2L	795832	795902	412	6	7541	19	70	'6-13	63.47	6.9	2.4	intergenic	not near genes	chr2L_19_795001	chr2L_795001	0.32	RAL-738
7	chr2L	1341733	1341809	297	394	6587	5	76	'4-1	68.80	3.8	1.0	exon	CG33923 -	chr2L_5_1340001	chr2L_1340001	0.80	RAL-738
8	chr2L	1737407	1737454	P-element	12	2884	8	47	'4-4	49.48	10.3	0.7	intron	CG17646 +	chr2L_8_1735001	chr2L_1735001	0.50	RAL-738
9	chr2L	1846385	1846415	Doc	10	10	10	30	'7-3	69.86	7.9	1.1	intron	wry +	chr2L_10_1845001	chr2L_1845001	0.70	RAL-738
10	chr2L	2657064	2657114	I-element	5346	11	13	50	'7-6	60.96	10.5	1.1	3` UTR	Prosbeta4R2 +	chr2L_13_2655001	chr2L_2655001	0.54	RAL-738
11	chr2L	2700609	2700677	BS	4821	5085	16	68	'12-4	66.18	9.2	1.6	intron	CG31690 +	chr2L_16_2700001	chr2L_2700001	0.75	RAL-738
12	chr2L	2755310	2755359	P-element	2880	6	7	49	'4-3	50.32	12.1	0.5	intron	Bacc +	chr2L_7_2755001	chr2L_2755001	0.57	RAL-738
13	chr2L	2857156	2857221	P-element	2882	8	9	65	'4-5	55.02	15.3	0.6	intergenic	CG2991 +,RpS21 +	chr2L_9_2855001	chr2L_2855001	0.44	RAL-738
14	chr2L	3135710	3135789	mdg3	5254	247	25	79	'15-10	67.37	6.8	3.2	intron	toc -	chr2L_25_3135001	chr2L_3135001	0.60	RAL-738
15	chr2L	3292390	3292473	roo	8664	411	30	83	'19-11	64.23	7.4	3.6	3` UTR	CG9664 -	chr2L_30_3290001	chr2L_3290001	0.63	RAL-738
16	chr2L	3908449	3908479	jockey	4602	4617	15	30	'12-3	59.67	12.7	1.1	intron	fred -	chr2L_15_3905001	chr2L_3905001	0.80	RAL-738
17	chr2L	3964499	3964554	INE-1	534	575	4	55	'1-3	66.73	3.7	0.9	intron	fred -	chr2L_4_3960001	chr2L_3960001	0.25	RAL-738
18	chr2L	4658191	4658259	roo	8671	407	19	68	'5-14	65.74	4.1	3.7	intergenic	not near genes	chr2L_19_4655001	chr2L_4655001	0.26	RAL-738
19	chr2L	5790868	5790936	FB	5	4	17	68	'8-9	63.06	7.9	1.9	intron	CG9171 -	chr2L_17_5790001	chr2L_5790001	0.47	RAL-738
20	chr2L	6159000	6159071	mdg3	5497	5253	19	71	'11-8	67.70	5.6	2.9	intergenic	not near genes	chr2L_19_6155001	chr2L_6155001	0.58	RAL-738
21	chr2L	6251654	6251737	mdg3	5250	5498	20	83	'13-7	65.06	6.9	2.5	intergenic	not near genes	chr2L_20_6250001	chr2L_6250001	0.65	RAL-738
22	chr2L	6313098	6313168	hobo	2934	2	18	70	'4-14	61.75	6.1	2.5	intron	Ddr +	chr2L_18_6310001	chr2L_6310001	0.22	RAL-738
23	chr2L	6362608	6362636	Rt1b	5109	5137	8	28	'5-3	62.10	7.1	1.0	intergenic	not near genes	chr2L_8_6360001	chr2L_6360001	0.62	RAL-738
24	chr2L	6571750	6571779	hobo	1	30	16	29	'6-10	59.33	13.8	1.1	3` UTR	CG11319 -	chr2L_16_6570001	chr2L_6570001	0.38	RAL-738
25	chr2L	6679091	6679108	pogo	1	16	7	17	'4-3	64.10	12.4	0.5	intron	Nhe3 -	chr2L_7_6675001	chr2L_6675001	0.57	RAL-738
26	chr2L	7268225	7268294	mdg3	5251	5494	19	69	'11-8	64.88	6.7	2.5	intron	Wnt4 -	chr2L_19_7265001	chr2L_7265001	0.58	RAL-738
27	chr2L	7714028	7714043	roo	9055	407	5	15	'3-2	58.13	0.0	5.0	3` UTR	CG33296 -	chr2L_5_7710001	chr2L_7710001	0.60	RAL-738
28	chr2L	8126963	8127036	P-element	3	2	6	73	'3-3	57.55	9.4	0.6	intergenic	CG8668 +,CG12375 -	chr2L_6_8125001	chr2L_8125001	0.50	RAL-738
29	chr2L	8169219	8169250	FB	3	1	10	31	'5-5	66.94	5.3	1.6	intron	Piezo +	chr2L_10_8165001	chr2L_8165001	0.50	RAL-738
30	chr2L	8623475	8623498	gypsy6	7419	7417	4	23	'3-1	69.08	14.3	0.3	intron	Sema-1a +	chr2L_4_8620001	chr2L_8620001	0.75	RAL-738
31	chr2L	8623475	8623507	springer	7137	21	14	32	'5-9	67.67	12.3	1.1	intron	Sema-1a +	chr2L_14_8620001	chr2L_8620001	0.36	RAL-738
32	chr2L	8769517	8769595	roo	1	412	24	78	'9-15	68.90	12.5	1.8	exon	CG9465 -	chr2L_24_8765001	chr2L_8765001	0.38	RAL-738
33	chr2L	9017167	9017189	F-element	15	22	4	22	'2-2	58.95	8.3	0.4	intergenic	not near genes	chr2L_4_9015001	chr2L_9015001	0.50	RAL-738
34	chr2L	9290111	9290178	roo	10	405	19	67	'8-11	66.76	3.8	4.0	intron	Ggamma30A +	chr2L_19_9290001	chr2L_9290001	0.42	RAL-738
35	chr2L	9382009	9382034	F-element	17	6	8	25	'4-4	58.66	5.0	1.3	intron	Shawl -	chr2L_8_9380001	chr2L_9380001	0.50	RAL-738
36	chr2L	9601833	9601848	pogo	6	21	6	15	'4-2	65.46	7.9	0.7	intergenic	not near genes	chr2L_6_9600001	chr2L_9600001	0.67	RAL-738
37	chr2L	10556132	10556209	mdg1	421	7042	15	77	'9-6	66.45	5.0	2.5	intron	Trim9 +	chr2L_15_10555001	chr2L_10555001	0.60	RAL-738
38	chr2L	10849514	10849556	P-element	2886	2859	6	42	'4-2	51.34	6.5	0.8	intron	porin -	chr2L_6_10845001	chr2L_10845001	0.67	RAL-738
39	chr2L	11246501	11246581	roo	8664	411	27	80	'13-14	67.81	8.9	2.7	intron	ab +	chr2L_27_11245001	chr2L_11245001	0.48	RAL-738
40	chr2L	11350557	11350620	opus	7116	487	6	63	'5-1	65.90	5.6	0.9	intergenic	not near genes	chr2L_6_11350001	chr2L_11350001	0.83	RAL-738
41	chr2L	11379049	11379113	412	490	13	14	64	'6-8	63.75	5.3	2.2	intergenic	not near genes	chr2L_14_11375001	chr2L_11375001	0.43	RAL-738
42	chr2L	11474113	11474157	jockey	18	5	13	44	'6-7	64.88	12.1	1.0	intergenic	not near genes	chr2L_13_11470001	chr2L_11470001	0.46	RAL-738
43	chr2L	11528342	11528368	pogo	2	19	7	26	'2-5	71.27	10.7	0.6	intergenic	CG31705 -	chr2L_7_11525001	chr2L_11525001	0.29	RAL-738
44	chr2L	11555386	11555428	hobo	15	2935	13	42	'9-4	62.94	3.9	2.7	intergenic	not near genes	chr2L_13_11555001	chr2L_11555001	0.69	RAL-738
45	chr2L	11867548	11867615	hopper	1407	1409	10	67	'6-4	62.38	8.2	1.1	intron	Pde1c -	chr2L_10_11865001	chr2L_11865001	0.60	RAL-738
46	chr2L	11930220	11930279	hopper	10	4	7	59	'2-5	60.83	17.2	0.4	intergenic	not near genes	chr2L_7_11930001	chr2L_11930001	0.29	RAL-738
47	chr2L	12086594	12086673	opus	7115	494	16	79	'6-10	67.48	7.4	1.9	intergenic	CR44593 +,CR44592 +	chr2L_16_12085001	chr2L_12085001	0.38	RAL-738
48	chr2L	12109190	12109271	412	7539	496	15	81	'6-9	58.96	7.9	1.7	intergenic	Rab6 -,Phae1 +	chr2L_15_12105001	chr2L_12105001	0.40	RAL-738
49	chr2L	12398279	12398322	P-element	2864	2876	7	43	'3-4	44.76	9.8	0.6	5` UTR	Pkd2 +	chr2L_7_12395001	chr2L_12395001	0.43	RAL-738
50	chr2L	12487060	12487143	297	395	6581	9	83	'3-6	70.47	4.2	1.7	intron	bun -	chr2L_9_12485001	chr2L_12485001	0.33	RAL-738
51	chr2L	12673734	12673808	roo	4	408	20	74	'11-9	68.38	6.5	2.7	intron	pdm2 +	chr2L_20_12670001	chr2L_12670001	0.55	RAL-738
52	chr2L	12970925	12970952	Doc	6	14	6	27	'3-3	59.36	7.5	0.7	intergenic	not near genes	chr2L_6_12970001	chr2L_12970001	0.50	RAL-738
53	chr2L	13357093	13357127	F-element	4613	4622	8	34	'3-5	62.63	10.8	0.7	intergenic	not near genes	chr2L_8_13355001	chr2L_13355001	0.38	RAL-738
54	chr2L	13573164	13573222	FB	5	5	16	58	'10-6	63.26	6.3	2.2	intron	kuz +	chr2L_16_13570001	chr2L_13570001	0.62	RAL-738
55	chr2L	13579688	13579712	flea	4773	4754	6	24	'3-3	66.48	10.2	0.5	intron	kuz +	chr2L_6_13575001	chr2L_13575001	0.50	RAL-738
56	chr2L	13606434	13606463	G2	2648	2678	11	29	'5-6	66.15	7.8	1.2	intron	kuz +	chr2L_11_13605001	chr2L_13605001	0.45	RAL-738
57	chr2L	13763488	13763555	Bari1	1700	10	6	67	'1-5	59.46	9.7	0.6	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	0.17	RAL-738
58	chr2L	13929175	13929204	copia	4868	28	8	29	'4-4	60.62	8.7	0.8	intron	Ance-3 +	chr2L_8_13925001	chr2L_13925001	0.50	RAL-738
59	chr2L	14049102	14049167	mdg1	419	7052	20	65	'15-5	62.75	2.6	5.6	intron	nAChRalpha5 +	chr2L_20_14045001	chr2L_14045001	0.75	RAL-738
60	chr2L	14834904	14834964	Bari1	5	1691	7	60	'6-1	65.72	8.0	0.8	intergenic	not near genes	chr2L_7_14830001	chr2L_14830001	0.86	RAL-738
61	chr2L	15135254	15135311	412	1	16	7	57	'6-1	65.72	9.4	0.7	intergenic	not near genes	chr2L_7_15135001	chr2L_15135001	0.86	RAL-738
62	chr2L	15332784	15332804	P-element	1	2882	5	20	'3-2	62.93	16.7	0.3	intergenic	not near genes	chr2L_5_15330001	chr2L_15330001	0.60	RAL-738
63	chr2L	15894679	15894737	hobo	4	2928	11	58	'7-4	65.06	9.6	1.0	intergenic	not near genes	chr2L_11_15890001	chr2L_15890001	0.64	RAL-738
64	chr2L	15895324	15895404	297	6582	392	15	80	'5-10	65.01	8.6	1.6	intergenic	CG31735 +	chr2L_15_15895001	chr2L_15895001	0.33	RAL-738
65	chr2L	15897564	15897586	297	204	6794	7	22	'4-3	56.30	20.0	0.3	intergenic	CG31735 +	chr2L_7_15895001	chr2L_15895001	0.57	RAL-738
66	chr2L	15978494	15978559	17.6	7	485	5	65	'2-3	63.87	5.8	0.7	intergenic	not near genes	chr2L_5_15975001	chr2L_15975001	0.40	RAL-738
67	chr2L	16012474	16012540	Ivk	1	5368	17	66	'15-2	60.85	8.6	1.8	intron	beat-Ic +	chr2L_17_16010001	chr2L_16010001	0.88	RAL-738
68	chr2L	16130481	16130563	297	6	394	10	82	'3-7	65.75	5.9	1.4	intergenic	not near genes	chr2L_10_16130001	chr2L_16130001	0.30	RAL-738
69	chr2L	16253659	16253740	Max-element	8232	8534	22	81	'9-13	62.42	11.1	1.8	intron	PRL-1 -	chr2L_22_16250001	chr2L_16250001	0.41	RAL-738
70	chr2L	16272508	16272567	1360	1	3372	31	59	'20-11	69.36	10.1	2.8	intron	crp -	chr2L_31_16270001	chr2L_16270001	0.65	RAL-738
71	chr2L	16523213	16523259	Tirant	8116	8493	12	46	'3-9	63.10	8.5	1.3	intron	CG5953 -	chr2L_12_16520001	chr2L_16520001	0.25	RAL-738
72	chr2L	17129535	17129583	flea	4773	237	4	48	'2-2	68.33	6.8	0.5	intergenic	not near genes	chr2L_4_17125001	chr2L_17125001	0.50	RAL-738
73	chr2L	17189176	17189230	pogo	2	2073	8	54	'7-1	70.69	4.3	1.5	3` UTR	beat-IIIc -	chr2L_8_17185001	chr2L_17185001	0.88	RAL-738
74	chr2L	17196077	17196149	pogo	2093	4	15	72	'7-8	65.02	7.1	1.9	intron	beat-IIIc -	chr2L_15_17195001	chr2L_17195001	0.47	RAL-738
75	chr2L	17330924	17330977	mdg1	461	7438	4	53	'2-2	56.68	11.1	0.3	intergenic	not near genes	chr2L_4_17330001	chr2L_17330001	0.50	RAL-738
76	chr2L	17478154	17478211	Juan	5	4207	10	57	'7-3	58.71	7.1	1.2	intergenic	Aac11 -,fws -	chr2L_10_17475001	chr2L_17475001	0.70	RAL-738
77	chr2L	17557663	17557692	jockey	10	24	17	29	'10-7	58.44	12.4	1.3	intergenic	not near genes	chr2L_17_17555001	chr2L_17555001	0.59	RAL-738
78	chr2L	17611214	17611288	blood	7014	374	6	74	'4-2	69.50	7.7	0.7	intergenic	not near genes	chr2L_6_17610001	chr2L_17610001	0.67	RAL-738
79	chr2L	17734082	17734117	I-element	122	87	11	35	'4-7	65.82	14.0	0.7	intron	CadN -	chr2L_11_17730001	chr2L_17730001	0.36	RAL-738
80	chr2L	17815907	17815957	hobo	2932	16	7	50	'4-3	63.38	5.5	1.1	intron	CadN2 -	chr2L_7_17815001	chr2L_17815001	0.57	RAL-738
81	chr2L	17863522	17863558	I-element	19	5346	10	36	'6-4	59.30	8.4	1.1	intron	CadN2 -	chr2L_10_17860001	chr2L_17860001	0.60	RAL-738
82	chr2L	17951845	17951921	Tc3	312	319	9	76	'6-3	63.00	5.9	1.3	intergenic	CR44398 -,CR44397 -	chr2L_9_17950001	chr2L_17950001	0.67	RAL-738
83	chr2L	18163476	18163547	roo	8665	411	16	71	'7-9	61.94	6.7	2.1	intron	CG42750 -	chr2L_16_18160001	chr2L_18160001	0.44	RAL-738
84	chr2L	18173648	18173726	roo	8666	407	12	78	'7-5	64.82	7.1	1.5	intron	CG42750 -	chr2L_12_18170001	chr2L_18170001	0.58	RAL-738
85	chr2L	19085204	19085269	invader4	324	2769	15	65	'7-8	67.35	6.6	2.0	intron	Lim3 -	chr2L_15_19085001	chr2L_19085001	0.47	RAL-738
86	chr2L	19389432	19389507	hopper	1413	1412	15	75	'4-11	62.98	5.7	2.2	intron	CG17549 -	chr2L_15_19385001	chr2L_19385001	0.27	RAL-738
87	chr2L	19558227	19558300	mdg1	7042	7455	18	73	'7-11	63.58	7.5	2.1	intron	Tep5 +	chr2L_18_19555001	chr2L_19555001	0.39	RAL-738
88	chr2L	19632504	19632576	hobo	1	2934	17	72	'9-8	63.39	6.5	2.3	intron	Lar +	chr2L_17_19630001	chr2L_19630001	0.53	RAL-738
89	chr2L	19675607	19675669	hobo	2932	9	4	62	'2-2	57.70	14.3	0.3	intron	Lar +	chr2L_4_19675001	chr2L_19675001	0.50	RAL-738
90	chr2L	19691535	19691608	roo	4	405	16	73	'6-10	71.81	4.5	2.9	intron	Lar +	chr2L_16_19690001	chr2L_19690001	0.38	RAL-738
91	chr2L	19716455	19716495	springer	7153	7515	4	40	'3-1	57.81	10.2	0.4	intron	Lar +	chr2L_4_19715001	chr2L_19715001	0.75	RAL-738
92	chr2L	19859170	19859211	297	6968	6957	4	41	'2-2	68.54	4.7	0.7	intron	sick +	chr2L_4_19855001	chr2L_19855001	0.50	RAL-738
93	chr2L	20132989	20133071	297	1	395	17	82	'7-10	67.72	5.7	2.5	intergenic	not near genes	chr2L_17_20130001	chr2L_20130001	0.41	RAL-738
94	chr2L	20241176	20241214	412	3	470	4	38	'3-1	63.70	10.6	0.3	intergenic	not near genes	chr2L_4_20240001	chr2L_20240001	0.75	RAL-738
95	chr2L	20250599	20250679	hobo	2	2707	14	80	'9-5	65.49	9.9	1.3	intergenic	not near genes	chr2L_14_20250001	chr2L_20250001	0.64	RAL-738
96	chr2L	20293082	20293151	pogo	1	2087	18	69	'14-4	67.19	4.7	3.2	intergenic	not near genes	chr2L_18_20290001	chr2L_20290001	0.78	RAL-738
97	chr2L	20530888	20530959	mdg1	7048	7459	16	71	'2-14	65.18	6.2	2.2	intergenic	CG44270 +	chr2L_16_20530001	chr2L_20530001	0.12	RAL-738
98	chr2L	20542417	20542497	mdg1	7458	7038	14	80	'9-5	63.47	10.5	1.2	intergenic	not near genes	chr2L_14_20540001	chr2L_20540001	0.64	RAL-738
99	chr2L	20626198	20626272	roo	8661	399	5	74	'2-3	74.04	10.4	0.4	3` UTR	CR44909 -	chr2L_5_20625001	chr2L_20625001	0.40	RAL-738
100	chr2L	20822795	20822841	Tirant	8115	8476	18	46	'9-9	63.81	7.2	2.2	intergenic	CG9331 +	chr2L_18_20820001	chr2L_20820001	0.50	RAL-738
101	chr2L	20841945	20841972	G6	2017	2020	11	27	'7-4	58.13	15.9	0.7	intron	CG31676 +	chr2L_11_20840001	chr2L_20840001	0.64	RAL-738
102	chr2L	20929875	20929923	412	488	7081	5	48	'3-2	64.69	15.6	0.3	exon	CG9270 -	chr2L_5_20925001	chr2L_20925001	0.60	RAL-738
103	chr2L	20941871	20941956	Max-element	8234	304	14	85	'8-6	62.41	6.4	1.9	intergenic	not near genes	chr2L_14_20940001	chr2L_20940001	0.57	RAL-738
104	chr2L	20988593	20988658	F-element	4681	241	10	65	'6-4	64.64	16.4	0.6	intron	CG42238 -	chr2L_10_20985001	chr2L_20985001	0.60	RAL-738
105	chr2L	21111924	21111991	1360	8	2	12	67	'6-6	65.01	9.2	1.2	intron	Nhe2 +	chr2L_12_21110001	chr2L_21110001	0.50	RAL-738
106	chr2L	21360406	21360484	HMS-Beagle2	7193	2	25	78	'9-16	60.65	9.5	2.4	intergenic	not near genes	chr2L_25_21360001	chr2L_21360001	0.36	RAL-738
107	chr2L	21403522	21403539	G5	4407	4390	5	17	'3-2	59.20	2.2	1.6	intergenic	not near genes	chr2L_5_21400001	chr2L_21400001	0.60	RAL-738
108	chr2L	21570227	21570256	Dm88	4389	4359	9	29	'5-4	65.38	2.0	3.0	intergenic	not near genes	chr2L_9_21570001	chr2L_21570001	0.56	RAL-738
109	chr2L	21863360	21863413	Burdock	6155	6384	4	53	'1-3	63.86	10.5	0.3	intron	CR44917 +	chr2L_4_21860001	chr2L_21860001	0.25	RAL-738
110	chr2L	22054746	22054826	Transpac	311	3	20	80	'9-11	65.36	4.7	3.5	intergenic	CG34173 -	chr2L_20_22050001	chr2L_22050001	0.45	RAL-738
111	chr2L	23068854	23068921	1360	1	9	5	67	'2-3	67.03	10.0	0.5	intergenic	CR43242 +,Spf45 -	chr2L_5_23065001	chr2L_23065001	0.40	RAL-738
112	chr2L	23295816	23295855	micropia	454	13	4	39	'2-2	59.16	7.3	0.5	intergenic	not near genes	chr2L_4_23295001	chr2L_23295001	0.50	RAL-738
113	chr2R	675155	675204	Tirant	396	9	8	49	'3-5	66.84	6.0	1.1	intron	CG43676 +	chr2R_8_675001	chr2R_675001	0.38	RAL-738
114	chr2R	982046	982114	gypsy	7435	6987	4	68	'2-2	67.66	7.4	0.5	intergenic	not near genes	chr2R_4_980001	chr2R_980001	0.50	RAL-738
115	chr2R	1000378	1000444	gypsy	6997	462	14	66	'4-10	65.15	7.6	1.6	intergenic	not near genes	chr2R_14_1000001	chr2R_1000001	0.29	RAL-738
116	chr2R	2776872	2776893	opus	112	7025	4	21	'2-2	68.93	9.9	0.4	intron	CG41378 -	chr2R_4_2775001	chr2R_2775001	0.50	RAL-738
117	chr2R	3066085	3066111	Tirant	8110	391	5	26	'2-3	65.74	6.4	0.7	intergenic	CG42596 +	chr2R_5_3065001	chr2R_3065001	0.40	RAL-738
118	chr2R	4025684	4025732	roo	9046	8670	4	48	'3-1	69.57	10.1	0.4	intron	Haspin +	chr2R_4_4025001	chr2R_4025001	0.75	RAL-738
119	chr2R	4155680	4155695	blood	7376	7361	4	15	'2-2	63.60	28.8	0.1	intergenic	not near genes	chr2R_4_4155001	chr2R_4155001	0.50	RAL-738
120	chr2R	4906317	4906379	Ivk	2	5375	7	62	'4-3	62.78	10.9	0.6	intron	CG44102 -	chr2R_7_4905001	chr2R_4905001	0.57	RAL-738
121	chr2R	4974600	4974673	mdg3	5264	250	4	73	'1-3	65.33	4.8	0.7	intron	Ir41a +	chr2R_4_4970001	chr2R_4970001	0.25	RAL-738
122	chr2R	5110534	5110587	1360	22	3387	18	53	'6-12	68.71	7.5	2.1	intergenic	not near genes	chr2R_18_5110001	chr2R_5110001	0.33	RAL-738
123	chr2R	5178600	5178677	mdg3	241	5251	12	77	'2-10	61.45	9.0	1.2	exon	Nipped-A -	chr2R_12_5175001	chr2R_5175001	0.17	RAL-738
124	chr2R	5262578	5262647	1360	1	9	25	69	'12-13	65.26	9.6	2.4	intron	d4 +	chr2R_25_5260001	chr2R_5260001	0.48	RAL-738
125	chr2R	5485062	5485136	1360	3388	4	20	74	'14-6	70.95	7.6	2.3	intron	CG30440 -	chr2R_20_5485001	chr2R_5485001	0.70	RAL-738
126	chr2R	5674652	5674731	S-element	1711	1712	11	79	'1-10	67.23	4.0	2.2	intergenic	not near genes	chr2R_11_5670001	chr2R_5670001	0.09	RAL-738
127	chr2R	5892391	5892452	roo	8669	396	13	61	'5-8	64.99	11.6	1.0	intergenic	not near genes	chr2R_13_5890001	chr2R_5890001	0.38	RAL-738
128	chr2R	6040732	6040807	1360	3387	3388	33	75	'12-21	67.91	8.0	3.7	intergenic	CG14591 -	chr2R_33_6040001	chr2R_6040001	0.36	RAL-738
129	chr2R	6378287	6378302	1360	3370	3385	9	15	'4-5	63.65	7.9	1.0	intergenic	not near genes	chr2R_9_6375001	chr2R_6375001	0.44	RAL-738
130	chr2R	6433193	6433216	Circe	6960	136	7	23	'4-3	64.09	7.5	0.8	intergenic	not near genes	chr2R_7_6430001	chr2R_6430001	0.57	RAL-738
131	chr2R	6438354	6438369	Stalker4	397	398	4	15	'3-1	58.07	10.7	0.3	intergenic	not near genes	chr2R_4_6435001	chr2R_6435001	0.75	RAL-738
132	chr2R	6501719	6501794	P-element	2886	1	18	75	'11-7	51.64	7.2	2.2	intergenic	jing +	chr2R_18_6500001	chr2R_6500001	0.61	RAL-738
133	chr2R	6779768	6779845	17.6	489	2	32	77	'20-12	70.36	8.7	3.3	intron,3` UTR	Epac -,Cyp6a2 -	chr2R_32_6775001	chr2R_6775001	0.62	RAL-738
134	chr2R	7025125	7025203	P-element	2885	2870	27	78	'13-14	55.16	13.5	1.9	5` UTR	Tsp42Ef +	chr2R_27_7025001	chr2R_7025001	0.48	RAL-738
135	chr2R	7139749	7139810	hobo	20	2708	17	61	'12-5	69.97	8.2	1.8	intergenic	not near genes	chr2R_17_7135001	chr2R_7135001	0.71	RAL-738
136	chr2R	7290635	7290693	Max-element	8527	8245	14	58	'10-4	60.01	9.8	1.3	intron	pwn +	chr2R_14_7290001	chr2R_7290001	0.71	RAL-738
137	chr2R	7514004	7514063	Tc3	316	317	6	59	'3-3	63.89	3.7	1.3	3` UTR	CG1603 -	chr2R_6_7510001	chr2R_7510001	0.50	RAL-738
138	chr2R	7770356	7770437	roo	413	1	21	81	'17-4	66.91	4.5	3.8	intron,intron	CG30497 -,CG45093 -	chr2R_21_7770001	chr2R_7770001	0.81	RAL-738
139	chr2R	7981131	7981206	1360	1	3386	35	75	'20-15	67.44	9.5	3.3	intron	ACC -	chr2R_35_7980001	chr2R_7980001	0.57	RAL-738
140	chr2R	8102065	8102131	HMS-Beagle	247	6813	16	66	'12-4	65.48	7.9	1.8	3` UTR	CG11210 +	chr2R_16_8100001	chr2R_8100001	0.75	RAL-738
141	chr2R	8146936	8147018	gypsy	6986	7448	25	82	'16-9	63.10	5.7	3.7	intron,3` UTR	Lpin -,kermit -	chr2R_25_8145001	chr2R_8145001	0.64	RAL-738
142	chr2R	8310861	8310915	pogo	2078	2	19	54	'8-11	63.56	7.6	2.2	3` UTR	CR44449 -	chr2R_19_8310001	chr2R_8310001	0.42	RAL-738
143	chr2R	8560114	8560140	17.6	7417	7391	7	26	'4-3	69.14	5.2	1.1	intergenic	not near genes	chr2R_7_8560001	chr2R_8560001	0.57	RAL-738
144	chr2R	8601297	8601362	S-element	1712	1701	9	65	'7-2	66.97	3.9	1.8	intron	rgr +	chr2R_9_8600001	chr2R_8600001	0.78	RAL-738
145	chr2R	8642924	8642965	Doc2-element	4744	4695	12	41	'6-6	56.77	5.9	1.7	intergenic	not near genes	chr2R_12_8640001	chr2R_8640001	0.50	RAL-738
146	chr2R	8686596	8686669	roo	8665	409	37	73	'21-16	68.94	6.6	4.9	intergenic	not near genes	chr2R_37_8685001	chr2R_8685001	0.57	RAL-738
147	chr2R	8689569	8689594	jockey	26	15	8	25	'7-1	51.34	15.6	0.5	intergenic	not near genes	chr2R_8_8685001	chr2R_8685001	0.88	RAL-738
148	chr2R	8714768	8714845	blood	7389	7010	20	77	'5-15	63.66	8.2	2.2	3` UTR	PGRP-SC1b +	chr2R_20_8710001	chr2R_8710001	0.25	RAL-738
149	chr2R	9060395	9060428	F-element	4641	4674	7	33	'4-3	70.74	5.6	1.1	intron	CG13743 -	chr2R_7_9060001	chr2R_9060001	0.57	RAL-738
150	chr2R	9311984	9312065	3S18	5761	6105	26	81	'19-7	63.54	8.2	2.8	3` UTR,3` UTR	CG13739 -,CG13954 -	chr2R_26_9310001	chr2R_9310001	0.73	RAL-738
151	chr2R	9413392	9413487	P-element	378	6	35	95	'26-9	52.92	7.6	4.1	5` UTR	wun -	chr2R_35_9410001	chr2R_9410001	0.74	RAL-738
152	chr2R	9626710	9626792	roo	407	8661	31	82	'16-15	68.76	11.1	2.6	intron	Mmp2 -	chr2R_31_9625001	chr2R_9625001	0.52	RAL-738
153	chr2R	9725595	9725623	BS	4969	4961	11	28	'7-4	56.33	7.6	1.3	intron	sqa -	chr2R_11_9725001	chr2R_9725001	0.64	RAL-738
154	chr2R	9870996	9871072	roo	411	7	23	76	'13-10	65.68	6.4	3.1	intron	cbx -	chr2R_23_9870001	chr2R_9870001	0.57	RAL-738
155	chr2R	10350981	10351061	297	6580	391	24	80	'10-14	65.34	8.3	2.6	intron	CG42732 -	chr2R_24_10350001	chr2R_10350001	0.42	RAL-738
156	chr2R	10411406	10411431	opus	112	5	6	25	'4-2	72.21	6.6	0.8	intron	CG42732 -	chr2R_6_10410001	chr2R_10410001	0.67	RAL-738
157	chr2R	10583333	10583401	P-element	1	2881	9	68	'5-4	49.47	8.4	1.0	intron	psq +	chr2R_9_10580001	chr2R_10580001	0.56	RAL-738
158	chr2R	11005769	11005801	hobo	1	12	18	32	'7-11	60.65	8.7	1.9	intron	luna -	chr2R_18_11005001	chr2R_11005001	0.39	RAL-738
159	chr2R	11006124	11006178	hobo	2931	2	14	54	'3-11	64.38	5.3	2.2	intron	luna -	chr2R_14_11005001	chr2R_11005001	0.21	RAL-738
160	chr2R	11098549	11098632	Burdock	6134	6390	23	83	'17-6	69.48	5.8	3.4	intron	luna -	chr2R_23_11095001	chr2R_11095001	0.74	RAL-738
161	chr2R	11404017	11404095	mdg3	5253	5496	35	78	'26-9	65.87	9.2	3.4	intergenic	not near genes	chr2R_35_11400001	chr2R_11400001	0.74	RAL-738
162	chr2R	11610891	11610973	roo	8664	411	32	82	'15-17	66.94	9.4	3.1	intron	tou -	chr2R_32_11610001	chr2R_11610001	0.47	RAL-738
163	chr2R	11951801	11951871	pogo	3	2097	24	70	'21-3	66.68	7.1	3.0	intron	CG13188 +	chr2R_24_11950001	chr2R_11950001	0.88	RAL-738
164	chr2R	12185329	12185406	accord	7381	2	19	77	'9-10	63.23	14.7	1.2	3` UTR,3` UTR	CG13175 +,CG33964 +	chr2R_19_12185001	chr2R_12185001	0.47	RAL-738
165	chr2R	12419502	12419526	jockey	4964	4988	10	24	'5-5	58.06	3.5	2.2	intergenic	CG42782 -,CG8834 -	chr2R_10_12415001	chr2R_12415001	0.50	RAL-738
166	chr2R	12452230	12452302	pogo	2095	6	20	72	'8-12	64.82	7.3	2.4	3` UTR	Dyb +	chr2R_20_12450001	chr2R_12450001	0.40	RAL-738
167	chr2R	13078730	13078764	jockey	4669	4703	10	34	'4-6	59.24	10.3	0.9	intron	Drl-2 -	chr2R_10_13075001	chr2R_13075001	0.40	RAL-738
168	chr2R	13217675	13217760	Burdock	6134	256	38	85	'21-17	62.64	7.5	4.5	exon	CG4630 -	chr2R_38_13215001	chr2R_13215001	0.55	RAL-738
169	chr2R	13448813	13448868	Juan	2	4206	11	55	'6-5	55.25	10.4	1.0	intron	cnn -	chr2R_11_13445001	chr2R_13445001	0.55	RAL-738
170	chr2R	13605803	13605830	I-element	5337	5349	6	27	'3-3	65.67	6.6	0.8	intergenic	CG34236 -	chr2R_6_13605001	chr2R_13605001	0.50	RAL-738
171	chr2R	13796910	13796984	Transpac	5227	4925	32	74	'16-16	65.45	11.8	2.5	intron	Cpr50Cb +	chr2R_32_13795001	chr2R_13795001	0.50	RAL-738
172	chr2R	13941212	13941241	jockey	4810	4781	13	29	'10-3	57.64	8.4	1.4	intron	shot -	chr2R_13_13940001	chr2R_13940001	0.77	RAL-738
173	chr2R	14337117	14337195	297	395	6584	14	78	'11-3	68.56	5.2	2.3	intron	Shroom +	chr2R_14_14335001	chr2R_14335001	0.79	RAL-738
174	chr2R	14338175	14338251	roo	8664	9069	35	76	'17-18	68.56	5.8	5.1	intron	Shroom +	chr2R_35_14335001	chr2R_14335001	0.49	RAL-738
175	chr2R	14713621	14713685	P-element	10	2886	20	64	'4-16	50.39	10.0	1.8	5` UTR	mspo -	chr2R_20_14710001	chr2R_14710001	0.20	RAL-738
176	chr2R	14714547	14714620	hobo	6	2710	14	73	'8-6	69.82	9.8	1.3	intergenic	not near genes	chr2R_14_14710001	chr2R_14710001	0.57	RAL-738
177	chr2R	14848979	14849006	flea	4701	4696	8	27	'5-3	65.20	20.1	0.4	exon	SMC2 -	chr2R_8_14845001	chr2R_14845001	0.62	RAL-738
178	chr2R	14925063	14925122	roo	8664	9050	17	59	'9-8	68.97	4.2	3.3	intron	CG10249 -	chr2R_17_14925001	chr2R_14925001	0.53	RAL-738
179	chr2R	14995383	14995451	hobo	2707	14	20	68	'9-11	67.35	7.6	2.3	intergenic	CR43830 +	chr2R_20_14995001	chr2R_14995001	0.45	RAL-738
180	chr2R	16059734	16059806	297	6970	6584	7	72	'2-5	68.23	8.5	0.7	3` UTR	CG8405 +	chr2R_7_16055001	chr2R_16055001	0.29	RAL-738
181	chr2R	16474625	16474708	Transpac	311	4919	18	83	'8-10	63.64	2.1	5.8	intergenic	not near genes	chr2R_18_16470001	chr2R_16470001	0.44	RAL-738
182	chr2R	16867977	16868001	Juan	4183	4207	5	24	'4-1	70.67	6.4	0.7	intergenic	Ef1beta +,Psi -	chr2R_5_16865001	chr2R_16865001	0.80	RAL-738
183	chr2R	16908701	16908762	412	494	7073	27	61	'20-7	61.06	5.4	4.2	intergenic	not near genes	chr2R_27_16905001	chr2R_16905001	0.74	RAL-738
184	chr2R	16992796	16992869	412	494	1	26	73	'15-11	61.84	7.3	3.1	intron	Cbp53E +	chr2R_26_16990001	chr2R_16990001	0.58	RAL-738
185	chr2R	17231247	17231313	springer	7138	369	9	66	'5-4	64.04	5.1	1.5	intron	mbl +	chr2R_9_17230001	chr2R_17230001	0.56	RAL-738
186	chr2R	17231253	17231272	gypsy3	7	6582	5	19	'4-1	58.09	7.5	0.6	intron	mbl +	chr2R_5_17230001	chr2R_17230001	0.80	RAL-738
187	chr2R	17483296	17483377	Stalker2	7247	7246	42	81	'19-23	62.35	7.9	4.7	exon	CG43110 -	chr2R_42_17480001	chr2R_17480001	0.45	RAL-738
188	chr2R	18028091	18028130	jockey	4977	9	12	39	'8-4	66.62	6.8	1.5	intergenic	not near genes	chr2R_12_18025001	chr2R_18025001	0.67	RAL-738
189	chr2R	19003087	19003155	hobo	7	2937	22	68	'12-10	61.20	7.6	2.6	intron	tn +	chr2R_22_19000001	chr2R_19000001	0.55	RAL-738
190	chr2R	19020724	19020795	17.6	7412	2	6	71	'3-3	66.73	4.1	1.2	intergenic	not near genes	chr2R_6_19020001	chr2R_19020001	0.50	RAL-738
191	chr2R	19066598	19066628	Doc	1	31	11	30	'2-9	58.02	7.4	1.3	intergenic	not near genes	chr2R_11_19065001	chr2R_19065001	0.18	RAL-738
192	chr2R	19087024	19087098	hobo	2	2938	14	74	'10-4	61.45	7.9	1.6	intron	5-HT1A +	chr2R_14_19085001	chr2R_19085001	0.71	RAL-738
193	chr2R	19253852	19253913	jockey	4987	12	20	61	'6-14	61.10	7.0	2.5	intergenic	not near genes	chr2R_20_19250001	chr2R_19250001	0.30	RAL-738
194	chr2R	19680830	19680862	F-element	4506	4478	13	32	'6-7	64.90	6.0	1.9	3` UTR	CG15127 -	chr2R_13_19680001	chr2R_19680001	0.46	RAL-738
195	chr2R	19933185	19933203	412	489	479	12	18	'6-6	57.05	6.6	1.6	intergenic	not near genes	chr2R_12_19930001	chr2R_19930001	0.50	RAL-738
196	chr2R	20520178	20520244	Ivk	5378	2	20	66	'5-15	63.69	7.6	2.3	intergenic	not near genes	chr2R_20_20520001	chr2R_20520001	0.25	RAL-738
197	chr2R	21199969	21199988	Juan	4205	4186	8	19	'4-4	62.84	7.5	0.9	intergenic	not near genes	chr2R_8_21195001	chr2R_21195001	0.50	RAL-738
198	chr2R	22105885	22105963	412	2	492	21	78	'10-11	64.38	7.7	2.4	3` UTR	CG6613 +	chr2R_21_22105001	chr2R_22105001	0.48	RAL-738
199	chr2R	22358736	22358789	jockey	4992	4675	20	53	'10-10	59.51	6.9	2.5	intron	Liprin-gamma -	chr2R_20_22355001	chr2R_22355001	0.50	RAL-738
200	chr2R	22451467	22451528	mdg1	7444	7043	14	61	'7-7	61.08	4.1	2.7	intergenic	not near genes	chr2R_14_22450001	chr2R_22450001	0.50	RAL-738
201	chr2R	22949531	22949601	mdg3	5252	5493	15	70	'9-6	66.15	7.6	1.7	intergenic	not near genes	chr2R_15_22945001	chr2R_22945001	0.60	RAL-738
202	chr2R	23265969	23266035	P-element	6	2886	8	66	'2-6	59.21	7.1	1.0	intergenic	CG12782 -	chr2R_8_23265001	chr2R_23265001	0.25	RAL-738
203	chr2R	23341723	23341747	roo	387	411	11	24	'9-2	63.07	5.1	1.8	intergenic	not near genes	chr2R_11_23340001	chr2R_23340001	0.82	RAL-738
204	chr2R	24132652	24132719	pogo	4	2094	22	67	'14-8	67.19	10.8	1.9	intron	tamo -	chr2R_22_24130001	chr2R_24130001	0.64	RAL-738
205	chr2R	24322440	24322513	Max-element	8240	299	24	73	'11-13	59.55	10.2	2.1	intergenic	not near genes	chr2R_24_24320001	chr2R_24320001	0.46	RAL-738
206	chr2R	24925406	24925477	412	10	493	23	71	'15-8	62.05	2.7	6.2	intron	pain -	chr2R_23_24925001	chr2R_24925001	0.65	RAL-738
207	chr2R	24928229	24928304	P-element	1	2	22	75	'16-6	48.30	12.4	1.6	intron	pain -	chr2R_22_24925001	chr2R_24925001	0.73	RAL-738
208	chr2R	25195788	25195852	roo	8668	398	14	64	'7-7	69.33	7.4	1.7	intron	CG9380 -	chr2R_14_25195001	chr2R_25195001	0.50	RAL-738
209	chr3L	380991	381073	Transpac	310	4919	33	82	'21-12	66.36	9.0	3.3	intron	trh -	chr3L_33_380001	chr3L_380001	0.64	RAL-738
210	chr3L	685738	685789	Idefix	7	7368	11	51	'8-3	67.96	7.9	1.2	intergenic	ebd1 -,CG3344 -	chr3L_11_685001	chr3L_685001	0.73	RAL-738
211	chr3L	1909686	1909765	roo	8667	410	15	79	'8-7	66.21	4.7	2.6	intron	CG1887 -	chr3L_15_1905001	chr3L_1905001	0.53	RAL-738
212	chr3L	2175759	2175776	I-element	5347	5330	6	17	'3-3	61.55	8.2	0.7	intergenic	not near genes	chr3L_6_2175001	chr3L_2175001	0.50	RAL-738
213	chr3L	2184983	2185011	jockey	7	30	8	28	'3-5	70.72	19.1	0.4	intergenic	not near genes	chr3L_8_2180001	chr3L_2180001	0.38	RAL-738
214	chr3L	2243724	2243808	roo	409	8661	32	84	'12-20	67.88	8.8	3.3	intergenic	ACXD +	chr3L_32_2240001	chr3L_2240001	0.38	RAL-738
215	chr3L	3655439	3655467	Doc	4306	4278	13	28	'9-4	62.35	7.6	1.5	intergenic	not near genes	chr3L_13_3655001	chr3L_3655001	0.69	RAL-738
216	chr3L	3798583	3798630	1360	3383	25	9	47	'7-2	62.58	3.4	2.0	intron	CG32264 -	chr3L_9_3795001	chr3L_3795001	0.78	RAL-738
217	chr3L	4481870	4481950	roo	404	8660	18	80	'8-10	68.01	3.8	3.8	intergenic	CG7465 +	chr3L_18_4480001	chr3L_4480001	0.44	RAL-738
218	chr3L	4565381	4565452	pogo	6	2094	17	71	'11-6	68.99	6.4	2.3	intron	CG42540 +	chr3L_17_4565001	chr3L_4565001	0.65	RAL-738
219	chr3L	4633805	4633835	hobo	11	1	9	30	'5-4	64.90	3.4	2.0	intron	axo -	chr3L_9_4630001	chr3L_4630001	0.56	RAL-738
220	chr3L	5017472	5017551	412	496	4	12	79	'6-6	62.76	7.2	1.5	intron	Con -	chr3L_12_5015001	chr3L_5015001	0.50	RAL-738
221	chr3L	5043613	5043688	roo	3	409	17	75	'5-12	63.99	5.4	2.7	intron	Con -	chr3L_17_5040001	chr3L_5040001	0.29	RAL-738
222	chr3L	5142926	5143004	diver	227	5887	17	78	'10-7	62.36	7.9	1.9	intron	CG4623 +	chr3L_17_5140001	chr3L_5140001	0.59	RAL-738
223	chr3L	5185389	5185445	I-element	8	5347	16	56	'9-7	62.74	6.1	2.3	intron	shep -	chr3L_16_5185001	chr3L_5185001	0.56	RAL-738
224	chr3L	5355290	5355366	P-element	1	1	15	76	'9-6	54.46	7.9	1.7	intron	lama -	chr3L_15_5355001	chr3L_5355001	0.60	RAL-738
225	chr3L	5524087	5524156	roo	408	8672	16	69	'7-9	62.28	6.8	2.1	intron	Lkr -	chr3L_16_5520001	chr3L_5520001	0.44	RAL-738
226	chr3L	5735416	5735441	jockey	7	11	12	25	'7-5	56.44	5.9	1.7	intron	sif +	chr3L_12_5735001	chr3L_5735001	0.58	RAL-738
227	chr3L	5976362	5976434	hobo	7	2708	22	72	'16-6	62.05	7.9	2.5	intergenic	CG10479 -	chr3L_22_5975001	chr3L_5975001	0.73	RAL-738
228	chr3L	6665744	6665807	blood	7018	12	22	63	'11-11	62.75	8.4	2.3	intergenic	eIF4E-4 -,CR45173 -	chr3L_22_6665001	chr3L_6665001	0.50	RAL-738
229	chr3L	6686330	6686363	jockey	93	60	23	33	'13-10	60.14	6.7	3.0	intergenic	not near genes	chr3L_23_6685001	chr3L_6685001	0.57	RAL-738
230	chr3L	7117662	7117742	opus	495	112	19	80	'9-10	69.67	6.7	2.5	intron	form3 +	chr3L_19_7115001	chr3L_7115001	0.47	RAL-738
231	chr3L	7232211	7232287	copia	4868	250	22	76	'14-8	62.77	4.8	3.8	intergenic	not near genes	chr3L_22_7230001	chr3L_7230001	0.64	RAL-738
232	chr3L	7432515	7432544	jockey	10	15	22	29	'9-13	59.26	15.6	1.3	intron	CG42458 +	chr3L_22_7430001	chr3L_7430001	0.41	RAL-738
233	chr3L	7447477	7447524	roo	8663	9042	5	47	'2-3	73.11	7.3	0.6	intron	CG42458 +	chr3L_5_7445001	chr3L_7445001	0.40	RAL-738
234	chr3L	7786193	7786276	roo	8663	409	23	83	'12-11	68.79	3.3	5.3	intron	CG32369 -	chr3L_23_7785001	chr3L_7785001	0.52	RAL-738
235	chr3L	7841692	7841770	diver	226	2	30	78	'19-11	62.02	8.9	3.0	intron	Pdp1 -	chr3L_30_7840001	chr3L_7840001	0.63	RAL-738
236	chr3L	7842732	7842811	297	2	393	19	79	'14-5	64.46	3.5	4.2	intron	Pdp1 -	chr3L_19_7840001	chr3L_7840001	0.74	RAL-738
237	chr3L	8395246	8395298	pogo	13	2091	8	52	'2-6	69.30	5.8	1.2	intergenic	not near genes	chr3L_8_8395001	chr3L_8395001	0.25	RAL-738
238	chr3L	8412810	8412878	S-element	1708	1710	13	68	'6-7	64.66	8.1	1.4	5` UTR,intron	Oseg1 -,Exo70 +	chr3L_13_8410001	chr3L_8410001	0.46	RAL-738
239	chr3L	8654468	8654541	roo	1	406	19	73	'14-5	64.10	5.2	3.1	intergenic	not near genes	chr3L_19_8650001	chr3L_8650001	0.74	RAL-738
240	chr3L	9336339	9336423	opus	498	111	26	84	'16-10	63.42	7.3	3.1	intron	PGRP-LA +	chr3L_26_9335001	chr3L_9335001	0.62	RAL-738
241	chr3L	9442914	9442941	TAHRE	10078	10085	6	27	'5-1	65.10	9.0	0.6	intergenic	CG33926 +	chr3L_6_9440001	chr3L_9440001	0.83	RAL-738
242	chr3L	9807296	9807369	flea	4756	5005	15	73	'10-5	68.44	6.1	2.1	intron	CG32052 +	chr3L_15_9805001	chr3L_9805001	0.67	RAL-738
243	chr3L	9811880	9811942	mdg3	5253	5485	12	62	'7-5	60.20	3.7	2.6	intergenic	not near genes	chr3L_12_9810001	chr3L_9810001	0.58	RAL-738
244	chr3L	9907294	9907356	BS	4998	5085	22	62	'15-7	60.50	2.5	6.3	intergenic	not near genes	chr3L_22_9905001	chr3L_9905001	0.68	RAL-738
245	chr3L	10023424	10023505	Transpac	1	310	27	81	'12-15	65.87	5.6	4.1	intron	dpr6 +	chr3L_27_10020001	chr3L_10020001	0.44	RAL-738
246	chr3L	10037718	10037799	pogo	2100	1	22	81	'4-18	68.72	5.6	3.3	intron	dpr6 +	chr3L_22_10035001	chr3L_10035001	0.18	RAL-738
247	chr3L	10045109	10045195	Transpac	311	4916	26	86	'15-11	62.30	5.0	4.3	intron	dpr6 +	chr3L_26_10045001	chr3L_10045001	0.58	RAL-738
248	chr3L	10469945	10470020	pogo	2095	3	11	75	'4-7	67.51	7.0	1.4	intergenic	not near genes	chr3L_11_10465001	chr3L_10465001	0.36	RAL-738
249	chr3L	10531632	10531694	FB	7	1	13	62	'8-5	62.95	6.2	1.8	intron	A2bp1 +	chr3L_13_10530001	chr3L_10530001	0.62	RAL-738
250	chr3L	10544785	10544811	Doc	30	4	9	26	'6-3	64.64	9.5	0.9	intron	A2bp1 +	chr3L_9_10540001	chr3L_10540001	0.67	RAL-738
251	chr3L	10624583	10624659	roo	402	8663	19	76	'8-11	70.03	10.8	1.6	intergenic	CG43127 -	chr3L_19_10620001	chr3L_10620001	0.42	RAL-738
252	chr3L	10674145	10674213	297	1	380	7	68	'4-3	66.48	9.9	0.6	intron	simj +	chr3L_7_10670001	chr3L_10670001	0.57	RAL-738
253	chr3L	10692383	10692463	pogo	2	2099	13	80	'8-5	70.50	7.9	1.5	3` UTR	CG11811 +	chr3L_13_10690001	chr3L_10690001	0.62	RAL-738
254	chr3L	11491145	11491164	gypsy	7425	457	11	19	'5-6	59.55	7.1	1.4	intron	chrb +	chr3L_11_11490001	chr3L_11490001	0.45	RAL-738
255	chr3L	11581664	11581748	diver	5887	222	20	84	'15-5	65.06	4.2	3.8	3` UTR	CG33269 -	chr3L_20_11580001	chr3L_11580001	0.75	RAL-738
256	chr3L	12300118	12300146	1360	3387	21	16	28	'9-7	64.84	9.1	1.6	intergenic	not near genes	chr3L_16_12300001	chr3L_12300001	0.56	RAL-738
257	chr3L	12527363	12527436	S-element	4	6	8	73	'2-6	65.84	3.3	1.9	3` UTR	nst -	chr3L_8_12525001	chr3L_12525001	0.25	RAL-738
258	chr3L	12634200	12634232	BS	4993	4994	7	32	'5-2	65.65	3.5	1.6	intron	CR32111 +	chr3L_7_12630001	chr3L_12630001	0.71	RAL-738
259	chr3L	12936986	12937050	412	7545	10	16	64	'6-10	63.11	7.1	2.0	intergenic	not near genes	chr3L_16_12935001	chr3L_12935001	0.38	RAL-738
260	chr3L	13195958	13196023	I-element	306	5348	17	65	'9-8	67.98	7.0	2.1	intergenic	not near genes	chr3L_17_13195001	chr3L_13195001	0.53	RAL-738
261	chr3L	13688090	13688125	jockey	34	10	16	35	'10-6	66.59	10.6	1.4	intron	bru-3 -	chr3L_16_13685001	chr3L_13685001	0.62	RAL-738
262	chr3L	13688740	13688764	Stalker	5	33	6	24	'3-3	70.41	3.8	1.2	intron	bru-3 -	chr3L_6_13685001	chr3L_13685001	0.50	RAL-738
263	chr3L	13688756	13688814	Stalker4	25	411	18	58	'4-14	62.82	4.8	3.1	intron	bru-3 -	chr3L_18_13685001	chr3L_13685001	0.22	RAL-738
264	chr3L	13693312	13693332	Doc	5	3	5	20	'4-1	55.81	9.1	0.5	intron	bru-3 -	chr3L_5_13690001	chr3L_13690001	0.80	RAL-738
265	chr3L	14114760	14114827	roo	8683	78	19	67	'3-16	66.83	8.2	2.1	intron	Sox21b -	chr3L_19_14110001	chr3L_14110001	0.16	RAL-738
266	chr3L	14299163	14299240	opus	5	498	4	77	'1-3	65.00	4.0	0.8	intron	fz +	chr3L_4_14295001	chr3L_14295001	0.25	RAL-738
267	chr3L	14396972	14397021	BS	4990	5067	5	49	'4-1	57.60	0.0	5.0	intergenic	not near genes	chr3L_5_14395001	chr3L_14395001	0.80	RAL-738
268	chr3L	14548850	14548937	Tirant	8107	403	20	87	'7-13	66.83	6.1	2.8	intron	CG9238 -	chr3L_20_14545001	chr3L_14545001	0.35	RAL-738
269	chr3L	14551078	14551102	pogo	2100	2100	7	24	'2-5	61.09	9.9	0.6	intergenic	CG9238 -	chr3L_7_14550001	chr3L_14550001	0.29	RAL-738
270	chr3L	14602756	14602821	hobo	2929	3	10	65	'1-9	60.81	9.4	1.0	intergenic	not near genes	chr3L_10_14600001	chr3L_14600001	0.10	RAL-738
271	chr3L	14743489	14743566	roo	411	8661	17	77	'9-8	68.49	7.3	2.0	intron	ome +	chr3L_17_14740001	chr3L_14740001	0.53	RAL-738
272	chr3L	15059332	15059414	roo	408	8661	25	82	'9-16	67.11	7.4	3.0	intron	Sytbeta -	chr3L_25_15055001	chr3L_15055001	0.36	RAL-738
273	chr3L	15099578	15099622	G4	3815	3803	8	44	'7-1	70.25	5.6	1.2	intron	CTPsyn +	chr3L_8_15095001	chr3L_15095001	0.88	RAL-738
274	chr3L	15384721	15384795	roo	8666	407	16	74	'12-4	64.29	8.4	1.7	intergenic	not near genes	chr3L_16_15380001	chr3L_15380001	0.75	RAL-738
275	chr3L	15515651	15515725	Tirant	4	399	21	74	'4-17	64.34	3.9	4.3	intergenic	not near genes	chr3L_21_15515001	chr3L_15515001	0.19	RAL-738
276	chr3L	15679173	15679255	Max-element	8233	302	17	82	'9-8	61.01	8.7	1.8	intergenic	not near genes	chr3L_17_15675001	chr3L_15675001	0.53	RAL-738
277	chr3L	16057828	16057902	roo	8664	402	28	74	'14-14	63.90	12.5	2.1	intron	Mbs +	chr3L_28_16055001	chr3L_16055001	0.50	RAL-738
278	chr3L	16312762	16312843	S-element	1715	1714	9	81	'6-3	64.55	1.0	4.5	intergenic	not near genes	chr3L_9_16310001	chr3L_16310001	0.67	RAL-738
279	chr3L	16556208	16556276	roo	409	12	25	68	'13-12	66.34	7.7	2.9	intergenic	not near genes	chr3L_25_16555001	chr3L_16555001	0.52	RAL-738
280	chr3L	16662318	16662394	1360	3388	2	32	76	'16-16	66.27	6.5	4.3	intergenic	Galphaf -	chr3L_32_16660001	chr3L_16660001	0.50	RAL-738
281	chr3L	16698822	16698900	pogo	3	2098	19	78	'10-9	67.26	7.1	2.3	intron,intron	Lasp -,CG43954 -	chr3L_19_16695001	chr3L_16695001	0.53	RAL-738
282	chr3L	16821099	16821181	297	6581	394	10	82	'5-5	67.09	8.0	1.1	intron	CG13024 -	chr3L_10_16820001	chr3L_16820001	0.50	RAL-738
283	chr3L	17220685	17220745	Transpac	294	4924	4	60	'1-3	67.58	4.0	0.8	intron	Rbp6 -	chr3L_4_17220001	chr3L_17220001	0.25	RAL-738
284	chr3L	17656667	17656697	F-element	4438	4408	11	30	'4-7	68.61	9.3	1.1	intergenic	not near genes	chr3L_11_17655001	chr3L_17655001	0.36	RAL-738
285	chr3L	17690699	17690768	copia	257	13	7	69	'5-2	62.29	7.3	0.8	intron	Ccn +	chr3L_7_17690001	chr3L_17690001	0.71	RAL-738
286	chr3L	17714993	17715047	mdg3	5480	5253	8	54	'3-5	66.45	6.8	1.0	intron	Ccn +	chr3L_8_17710001	chr3L_17710001	0.38	RAL-738
287	chr3L	17739335	17739402	roo	8669	400	11	67	'6-5	61.32	5.8	1.6	intron	Ccn +	chr3L_11_17735001	chr3L_17735001	0.55	RAL-738
288	chr3L	17788757	17788822	Stalker2	11	401	20	65	'7-13	62.65	7.3	2.4	intergenic	not near genes	chr3L_20_17785001	chr3L_17785001	0.35	RAL-738
289	chr3L	17934406	17934458	roo	9043	8664	15	52	'7-8	70.34	10.0	1.4	intron,intron	CG43173 +,CG43174 +	chr3L_15_17930001	chr3L_17930001	0.47	RAL-738
290	chr3L	17945237	17945305	Burdock	4	245	10	68	'6-4	61.90	7.3	1.2	intron	CG43174 +	chr3L_10_17945001	chr3L_17945001	0.60	RAL-738
291	chr3L	18063281	18063323	hopper	1390	1410	5	42	'2-3	70.06	10.8	0.4	intron	Eip75B -	chr3L_5_18060001	chr3L_18060001	0.40	RAL-738
292	chr3L	18079104	18079175	hopper	1411	1409	13	71	'9-4	66.36	12.9	0.9	intergenic	not near genes	chr3L_13_18075001	chr3L_18075001	0.69	RAL-738
293	chr3L	18473215	18473293	roo	4	410	8	78	'4-4	66.94	7.6	0.9	intergenic	not near genes	chr3L_8_18470001	chr3L_18470001	0.50	RAL-738
294	chr3L	18556395	18556457	blood	7381	7022	11	62	'2-9	61.33	11.3	0.9	intergenic	not near genes	chr3L_11_18555001	chr3L_18555001	0.18	RAL-738
295	chr3L	18816182	18816238	FB	8	12	13	56	'6-7	66.09	11.0	1.1	intron	CG14073 -	chr3L_13_18815001	chr3L_18815001	0.46	RAL-738
296	chr3L	18823311	18823340	roo	8664	8678	10	29	'5-5	65.74	9.2	1.0	intron	Cat +	chr3L_10_18820001	chr3L_18820001	0.50	RAL-738
297	chr3L	18833221	18833291	mdg1	419	9	8	70	'7-1	60.69	6.5	1.1	intron	Indy -	chr3L_8_18830001	chr3L_18830001	0.88	RAL-738
298	chr3L	18959350	18959422	hobo	2937	4	11	72	'4-7	62.82	8.2	1.2	intergenic	not near genes	chr3L_11_18955001	chr3L_18955001	0.36	RAL-738
299	chr3L	19147722	19147739	Doc	212	200	6	17	'1-5	56.77	17.2	0.3	intron	fz2 -	chr3L_6_19145001	chr3L_19145001	0.17	RAL-738
300	chr3L	19221693	19221709	HMS-Beagle	6820	6804	11	16	'7-4	62.16	13.1	0.8	intron	fz2 -	chr3L_11_19220001	chr3L_19220001	0.64	RAL-738
301	chr3L	19274801	19274850	transib2	2	2795	8	49	'6-2	67.59	9.0	0.8	intergenic	not near genes	chr3L_8_19270001	chr3L_19270001	0.75	RAL-738
302	chr3L	19339403	19339427	Tc1	26	2	4	24	'1-3	66.67	4.1	0.8	intergenic	not near genes	chr3L_4_19335001	chr3L_19335001	0.25	RAL-738
303	chr3L	19396916	19396947	Doc	3	11	13	31	'4-9	60.17	9.7	1.2	intron	CG32206 -	chr3L_13_19395001	chr3L_19395001	0.31	RAL-738
304	chr3L	19788121	19788192	FB	5	1	8	71	'4-4	64.47	5.9	1.2	intron,intron	CG42637 -,Gyc76C -	chr3L_8_19785001	chr3L_19785001	0.50	RAL-738
305	chr3L	19788541	19788599	Juan	4198	4022	8	58	'3-5	64.61	3.1	2.0	intron,intron	CG42637 -,Gyc76C -	chr3L_8_19785001	chr3L_19785001	0.38	RAL-738
306	chr3L	19940522	19940598	roo	411	7	8	76	'6-2	72.00	6.8	1.0	intron	Ac76E +	chr3L_8_19940001	chr3L_19940001	0.75	RAL-738
307	chr3L	20038533	20038563	G2	2634	2652	9	30	'3-6	60.70	13.9	0.6	intergenic	not near genes	chr3L_9_20035001	chr3L_20035001	0.33	RAL-738
308	chr3L	20039842	20039863	Doc	17	4	7	21	'5-2	56.11	11.2	0.6	intergenic	not near genes	chr3L_7_20035001	chr3L_20035001	0.71	RAL-738
309	chr3L	20065261	20065323	pogo	2098	3	9	62	'4-5	72.04	4.6	1.6	intron	sNPF-R -	chr3L_9_20065001	chr3L_20065001	0.44	RAL-738
310	chr3L	20192363	20192420	1360	1	13	9	57	'2-7	67.17	11.4	0.7	intron	CG42674 -	chr3L_9_20190001	chr3L_20190001	0.22	RAL-738
311	chr3L	20199308	20199379	Burdock	248	6140	13	71	'6-7	67.51	8.3	1.4	intergenic	not near genes	chr3L_13_20195001	chr3L_20195001	0.46	RAL-738
312	chr3L	20201758	20201835	Tirant	8111	8503	9	77	'3-6	63.67	11.8	0.7	intergenic	obst-F -,CG7298 -	chr3L_9_20200001	chr3L_20200001	0.33	RAL-738
313	chr3L	20224145	20224209	Chimpo	186	17	15	64	'8-7	67.77	9.1	1.5	intron	CG17147 +	chr3L_15_20220001	chr3L_20220001	0.53	RAL-738
314	chr3L	20361688	20361757	pogo	2100	14	7	69	'3-4	63.24	7.7	0.8	intergenic	DNApol-alpha60 -,Toll-9 -	chr3L_7_20360001	chr3L_20360001	0.43	RAL-738
315	chr3L	20535324	20535396	roo	411	8675	9	72	'6-3	71.41	12.9	0.6	intron,exon	Rcd2 -,CG13250 +	chr3L_9_20535001	chr3L_20535001	0.67	RAL-738
316	chr3L	20820388	20820444	roo	9047	8664	21	56	'8-13	64.62	12.5	1.6	intron	Pka-R1 +	chr3L_21_20820001	chr3L_20820001	0.38	RAL-738
317	chr3L	20838030	20838100	HMS-Beagle	7032	6796	12	70	'7-5	68.75	12.1	0.9	5` UTR	CG13255 +	chr3L_12_20835001	chr3L_20835001	0.58	RAL-738
318	chr3L	21093164	21093220	Ivk	5365	4	8	56	'5-3	66.88	6.1	1.1	intron	ko -	chr3L_8_21090001	chr3L_21090001	0.62	RAL-738
319	chr3L	21143985	21144016	jockey	4669	4679	5	31	'2-3	64.71	14.4	0.3	intron	Ac78C -	chr3L_5_21140001	chr3L_21140001	0.40	RAL-738
320	chr3L	21193404	21193474	hopper	5	1409	9	70	'5-4	61.03	5.6	1.4	intergenic	CG42337 -	chr3L_9_21190001	chr3L_21190001	0.56	RAL-738
321	chr3L	21222761	21222833	roo	398	8662	10	72	'4-6	65.53	5.1	1.6	intron	CG43219 +	chr3L_10_21220001	chr3L_21220001	0.40	RAL-738
322	chr3L	21229894	21229952	roo	19	406	5	58	'2-3	58.65	8.3	0.5	intron	Eip78C +	chr3L_5_21225001	chr3L_21225001	0.40	RAL-738
323	chr3L	21298417	21298435	Doc	9	12	8	18	'6-2	62.99	15.4	0.5	intergenic	CG43702 +	chr3L_8_21295001	chr3L_21295001	0.75	RAL-738
324	chr3L	21381912	21381979	P-element	2884	2875	10	67	'4-6	60.15	11.5	0.8	intergenic	not near genes	chr3L_10_21380001	chr3L_21380001	0.40	RAL-738
325	chr3L	21484994	21485061	1360	3386	3383	20	67	'11-9	67.18	9.3	1.9	intron	Neu2 -	chr3L_20_21480001	chr3L_21480001	0.55	RAL-738
326	chr3L	21614027	21614094	roo	8664	402	11	67	'5-6	67.26	6.3	1.5	intron	S1P -	chr3L_11_21610001	chr3L_21610001	0.45	RAL-738
327	chr3L	21764147	21764167	jockey	4983	4963	4	20	'3-1	58.52	17.8	0.2	intron	Syn1 -	chr3L_4_21760001	chr3L_21760001	0.75	RAL-738
328	chr3L	21883232	21883286	hopper	21	1410	5	54	'2-3	64.88	9.2	0.5	intron	mub +	chr3L_5_21880001	chr3L_21880001	0.40	RAL-738
329	chr3L	21906185	21906219	jockey	3	37	11	34	'6-5	63.28	15.8	0.7	intron	mub +	chr3L_11_21905001	chr3L_21905001	0.55	RAL-738
330	chr3L	22024465	22024527	roo	5	395	5	62	'2-3	64.68	13.1	0.4	intergenic	not near genes	chr3L_5_22020001	chr3L_22020001	0.40	RAL-738
331	chr3L	22094421	22094479	Transpac	12	298	14	58	'3-11	60.66	8.7	1.4	intergenic	not near genes	chr3L_14_22090001	chr3L_22090001	0.21	RAL-738
332	chr3L	22200614	22200692	roo	409	3	15	78	'10-5	69.31	8.8	1.5	intron	olf413 +	chr3L_15_22200001	chr3L_22200001	0.67	RAL-738
333	chr3L	22316525	22316600	roo	406	3	12	75	'8-4	68.15	7.0	1.5	intron	Ten-m -	chr3L_12_22315001	chr3L_22315001	0.67	RAL-738
334	chr3L	22320343	22320367	jockey	15	15	6	24	'4-2	60.00	19.1	0.3	intron	Ten-m -	chr3L_6_22320001	chr3L_22320001	0.67	RAL-738
335	chr3L	22332657	22332727	P-element	7	1	18	70	'5-13	52.91	12.9	1.3	intron	Ten-m -	chr3L_18_22330001	chr3L_22330001	0.28	RAL-738
336	chr3L	22466419	22466497	Transpac	4918	5226	19	78	'14-5	64.54	14.0	1.3	5` UTR	CG11438 +	chr3L_19_22465001	chr3L_22465001	0.74	RAL-738
337	chr3L	22823083	22823162	Burdock	256	4	15	79	'11-4	65.24	12.9	1.1	intron	jim -	chr3L_15_22820001	chr3L_22820001	0.73	RAL-738
338	chr3L	22984709	22984755	297	6586	363	4	46	'2-2	66.67	5.7	0.6	intergenic	not near genes	chr3L_4_22980001	chr3L_22980001	0.50	RAL-738
339	chr3L	22987094	22987117	S-element	1664	75	6	23	'1-5	57.01	6.5	0.8	intergenic	not near genes	chr3L_6_22985001	chr3L_22985001	0.17	RAL-738
340	chr3L	23146488	23146513	1360	3382	15	9	25	'5-4	61.78	6.6	1.2	intergenic	not near genes	chr3L_9_23145001	chr3L_23145001	0.56	RAL-738
341	chr3L	23205875	23205955	S-element	2	1714	8	80	'4-4	64.93	3.6	1.7	intergenic	not near genes	chr3L_8_23205001	chr3L_23205001	0.50	RAL-738
342	chr3L	23580793	23580857	Stalker2	7636	7246	9	64	'4-5	61.11	10.0	0.8	intron	AGO3 +	chr3L_9_23580001	chr3L_23580001	0.44	RAL-738
343	chr3L	23656268	23656289	roo	8991	337	4	21	'2-2	50.97	5.8	0.6	intron	AGO3 +	chr3L_4_23655001	chr3L_23655001	0.50	RAL-738
344	chr3L	23815780	23815803	F-element	14	13	6	23	'4-2	59.72	11.4	0.5	intergenic	not near genes	chr3L_6_23815001	chr3L_23815001	0.67	RAL-738
345	chr3L	24153192	24153242	Tabor	475	6860	8	50	'7-1	62.83	8.4	0.9	intron	Snap25 +	chr3L_8_24150001	chr3L_24150001	0.88	RAL-738
346	chr3L	24515436	24515460	Max-element	8236	8245	5	24	'3-2	66.70	4.1	1.0	intergenic	not near genes	chr3L_5_24515001	chr3L_24515001	0.60	RAL-738
347	chr3L	25078391	25078419	Transpac	4948	1	9	28	'5-4	65.33	7.9	1.0	intergenic	not near genes	chr3L_9_25075001	chr3L_25075001	0.56	RAL-738
348	chr3L	25152274	25152292	Doc	14	15	6	18	'5-1	63.73	16.1	0.4	intergenic	not near genes	chr3L_6_25150001	chr3L_25150001	0.83	RAL-738
349	chr3L	25162900	25162967	roo	8664	9037	14	67	'12-2	68.10	9.0	1.4	intergenic	not near genes	chr3L_14_25160001	chr3L_25160001	0.86	RAL-738
350	chr3L	25200581	25200615	Doc	4	38	4	34	'1-3	68.61	20.0	0.2	intergenic	not near genes	chr3L_4_25200001	chr3L_25200001	0.25	RAL-738
351	chr3L	25272542	25272563	1360	6	24	8	21	'3-5	64.65	4.8	1.4	intron	CG40467 -	chr3L_8_25270001	chr3L_25270001	0.38	RAL-738
352	chr3L	25323228	25323258	Max-element	12	8518	4	30	'3-1	66.86	6.5	0.5	intergenic	not near genes	chr3L_4_25320001	chr3L_25320001	0.75	RAL-738
353	chr3L	25412983	25413026	1360	3376	22	6	43	'3-3	77.30	5.7	0.9	intergenic	not near genes	chr3L_6_25410001	chr3L_25410001	0.50	RAL-738
354	chr3L	25872789	25872861	412	494	10	11	72	'5-6	61.23	8.5	1.2	intron	CG40178 -	chr3L_11_25870001	chr3L_25870001	0.45	RAL-738
355	chr3L	25873178	25873229	roo	8684	399	11	51	'7-4	70.70	7.9	1.2	intron	CG40178 -	chr3L_11_25870001	chr3L_25870001	0.64	RAL-738
356	chr3L	26386099	26386129	pogo	2069	2099	7	30	'4-3	65.35	9.9	0.6	intergenic	not near genes	chr3L_7_26385001	chr3L_26385001	0.57	RAL-738
357	chr3L	27356091	27356110	Tc3	1697	1681	4	19	'1-3	76.13	7.5	0.5	intron	Dbp80 +	chr3L_4_27355001	chr3L_27355001	0.25	RAL-738
358	chr3L	27415225	27415299	transib2	2823	6	11	74	'7-4	64.68	8.7	1.1	intron	Dbp80 +	chr3L_11_27415001	chr3L_27415001	0.64	RAL-738
359	chr3R	448024	448107	HMS-Beagle	246	6795	5	83	'1-4	70.58	5.1	0.8	intergenic	not near genes	chr3R_5_445001	chr3R_445001	0.20	RAL-738
360	chr3R	2474299	2474337	Juan	4208	3983	5	38	'4-1	56.86	8.9	0.5	intergenic	not near genes	chr3R_5_2470001	chr3R_2470001	0.80	RAL-738
361	chr3R	2651210	2651256	flea	4982	4754	5	46	'2-3	72.26	3.9	1.0	intron	CG41056 -	chr3R_5_2650001	chr3R_2650001	0.40	RAL-738
362	chr3R	2999777	2999836	McClintock	478	5955	5	59	'1-4	66.10	4.9	0.8	intron	CG42618 -	chr3R_5_2995001	chr3R_2995001	0.20	RAL-738
363	chr3R	4167983	4168048	1360	6	3382	11	65	'8-3	61.95	5.3	1.7	intergenic	not near genes	chr3R_11_4165001	chr3R_4165001	0.73	RAL-738
364	chr3R	4190908	4190986	pogo	3	2099	6	78	'3-3	66.82	10.8	0.5	intergenic	not near genes	chr3R_6_4190001	chr3R_4190001	0.50	RAL-738
365	chr3R	4317173	4317245	3S18	5765	6097	15	72	'10-5	64.43	12.5	1.1	intron	Syt14 -	chr3R_15_4315001	chr3R_4315001	0.67	RAL-738
366	chr3R	4452780	4452846	mdg1	422	8	6	66	'5-1	61.81	9.6	0.6	intron,5` UTR	CG31522 -,CR43629 +	chr3R_6_4450001	chr3R_4450001	0.83	RAL-738
367	chr3R	4464156	4464223	1360	2	10	13	67	'7-6	67.22	10.5	1.1	intergenic	not near genes	chr3R_13_4460001	chr3R_4460001	0.54	RAL-738
368	chr3R	4493440	4493513	roo	409	8	10	73	'5-5	68.10	6.9	1.3	exon	CG34357 -	chr3R_10_4490001	chr3R_4490001	0.50	RAL-738
369	chr3R	4570244	4570275	Juan	2	33	8	31	'5-3	61.75	8.6	0.8	intergenic	not near genes	chr3R_8_4570001	chr3R_4570001	0.62	RAL-738
370	chr3R	4605438	4605462	roo	11	8674	4	24	'2-2	71.36	8.6	0.4	intergenic	not near genes	chr3R_4_4605001	chr3R_4605001	0.50	RAL-738
371	chr3R	4617816	4617846	G2	274	244	11	30	'5-6	62.09	8.2	1.2	intron	5-HT2A +	chr3R_11_4615001	chr3R_4615001	0.45	RAL-738
372	chr3R	4635418	4635474	1360	14	9	8	56	'4-4	68.86	9.9	0.7	5` UTR	CR45673 +	chr3R_8_4635001	chr3R_4635001	0.50	RAL-738
373	chr3R	4667301	4667347	FB	8	21	6	46	'3-3	64.61	11.5	0.5	intron	CG43427 +	chr3R_6_4665001	chr3R_4665001	0.50	RAL-738
374	chr3R	4675020	4675087	roo	9059	8664	11	67	'4-7	63.85	10.2	1.0	intron	CG43427 +	chr3R_11_4675001	chr3R_4675001	0.36	RAL-738
375	chr3R	4885353	4885395	1360	22	3384	5	42	'2-3	72.66	9.7	0.5	intergenic	not near genes	chr3R_5_4885001	chr3R_4885001	0.40	RAL-738
376	chr3R	4913575	4913634	1360	181	3387	16	59	'2-14	62.38	12.4	1.2	intron	Cdep +	chr3R_16_4910001	chr3R_4910001	0.12	RAL-738
377	chr3R	4976834	4976916	Burdock	255	6136	12	82	'8-4	68.67	11.6	1.0	intergenic	not near genes	chr3R_12_4975001	chr3R_4975001	0.67	RAL-738
378	chr3R	5224882	5224958	1360	1	2	14	76	'4-10	65.88	13.0	1.0	3` UTR	CG14664 +	chr3R_14_5220001	chr3R_5220001	0.29	RAL-738
379	chr3R	5245586	5245647	1360	3382	10	17	61	'9-8	63.73	12.1	1.3	intron	CG12163 -	chr3R_17_5245001	chr3R_5245001	0.53	RAL-738
380	chr3R	5770595	5770665	mdg3	5253	237	10	70	'7-3	61.03	9.4	1.0	intron	CG2082 -	chr3R_10_5770001	chr3R_5770001	0.70	RAL-738
381	chr3R	5800082	5800156	Stalker2	7647	3	15	74	'7-8	62.91	7.0	1.9	intergenic	CG10979 +	chr3R_15_5800001	chr3R_5800001	0.47	RAL-738
382	chr3R	5952539	5952622	Burdock	257	6136	18	83	'7-11	66.40	7.5	2.1	intron	CG34113 -	chr3R_18_5950001	chr3R_5950001	0.39	RAL-738
383	chr3R	5961495	5961547	opus	7024	7492	17	52	'4-13	64.74	13.6	1.2	intergenic	not near genes	chr3R_17_5960001	chr3R_5960001	0.24	RAL-738
384	chr3R	6223907	6223980	pogo	4	2094	12	73	'7-5	67.55	8.0	1.3	intergenic	not near genes	chr3R_12_6220001	chr3R_6220001	0.58	RAL-738
385	chr3R	6423215	6423293	S-element	4	1714	11	78	'4-7	62.31	6.7	1.4	intron	gpp +	chr3R_11_6420001	chr3R_6420001	0.36	RAL-738
386	chr3R	6922229	6922299	copia	4869	246	10	70	'6-4	68.34	6.9	1.3	intron	Antp -	chr3R_10_6920001	chr3R_6920001	0.60	RAL-738
387	chr3R	6966486	6966511	pogo	11	2	6	25	'2-4	62.61	5.6	0.9	intron	Antp -	chr3R_6_6965001	chr3R_6965001	0.33	RAL-738
388	chr3R	7100994	7101063	pogo	2092	6	9	69	'4-5	66.36	10.9	0.8	intron	Alh -	chr3R_9_7100001	chr3R_7100001	0.44	RAL-738
389	chr3R	7167031	7167093	Tabor	7311	6	12	62	'6-6	60.88	5.5	1.8	intron	sas +	chr3R_12_7165001	chr3R_7165001	0.50	RAL-738
390	chr3R	7477449	7477468	BS	5023	5004	8	19	'6-2	58.26	9.6	0.8	intergenic	not near genes	chr3R_8_7475001	chr3R_7475001	0.75	RAL-738
391	chr3R	7492403	7492470	1360	3387	3379	10	67	'5-5	65.03	7.0	1.2	intron	alpha-Est10 -	chr3R_10_7490001	chr3R_7490001	0.50	RAL-738
392	chr3R	7528113	7528160	Stalker4	8	408	8	47	'6-2	71.28	15.4	0.5	intron	alpha-Est6 -	chr3R_8_7525001	chr3R_7525001	0.75	RAL-738
393	chr3R	7623893	7623952	mdg1	10	409	4	59	'2-2	60.58	8.0	0.4	intron	CG34127 -	chr3R_4_7620001	chr3R_7620001	0.50	RAL-738
394	chr3R	7640986	7641043	HMS-Beagle2	6889	293	11	57	'7-4	63.93	9.2	1.1	intergenic	not near genes	chr3R_11_7640001	chr3R_7640001	0.64	RAL-738
395	chr3R	7649781	7649805	flea	4755	4774	6	24	'4-2	67.08	8.3	0.6	intergenic	not near genes	chr3R_6_7645001	chr3R_7645001	0.67	RAL-738
396	chr3R	7663205	7663283	Burdock	6134	6385	5	78	'3-2	65.70	5.9	0.7	intron	Nlg1 +	chr3R_5_7660001	chr3R_7660001	0.60	RAL-738
397	chr3R	7747860	7747932	Transpac	311	6	16	72	'11-5	66.24	8.2	1.7	intergenic	pyd3 -	chr3R_16_7745001	chr3R_7745001	0.69	RAL-738
398	chr3R	7843266	7843293	Doc	3	25	7	27	'2-5	57.21	13.5	0.5	intron	CG34384 +	chr3R_7_7840001	chr3R_7840001	0.29	RAL-738
399	chr3R	7874894	7874926	jockey	10	21	9	32	'3-6	66.01	15.3	0.6	intron	CG17816 -	chr3R_9_7870001	chr3R_7870001	0.33	RAL-738
400	chr3R	7883378	7883438	FB	1	16	8	60	'4-4	66.92	8.5	0.8	intron	CG17816 -	chr3R_8_7880001	chr3R_7880001	0.50	RAL-738
401	chr3R	7964023	7964104	Burdock	6134	6388	17	81	'7-10	65.29	6.5	2.3	intron	dsx -	chr3R_17_7960001	chr3R_7960001	0.41	RAL-738
402	chr3R	8283429	8283445	Doc	15	38	7	16	'2-5	61.95	10.4	0.6	intergenic	not near genes	chr3R_7_8280001	chr3R_8280001	0.29	RAL-738
403	chr3R	8389658	8389733	pogo	7	2100	9	75	'4-5	65.80	7.5	1.1	intron	CG45263 -	chr3R_9_8385001	chr3R_8385001	0.44	RAL-738
404	chr3R	8443149	8443216	412	5	7542	14	67	'6-8	63.59	12.8	1.0	intron	CG45263 -	chr3R_14_8440001	chr3R_8440001	0.43	RAL-738
405	chr3R	8527516	8527569	pogo	12	2082	8	53	'5-3	75.67	11.8	0.6	intergenic	not near genes	chr3R_8_8525001	chr3R_8525001	0.62	RAL-738
406	chr3R	8543418	8543435	roo	9067	387	4	17	'2-2	59.33	14.6	0.3	intergenic	not near genes	chr3R_4_8540001	chr3R_8540001	0.50	RAL-738
407	chr3R	8548388	8548463	17.6	8	493	11	75	'4-7	68.41	6.1	1.5	intergenic	not near genes	chr3R_11_8545001	chr3R_8545001	0.36	RAL-738
408	chr3R	8645450	8645534	opus	499	112	15	84	'12-3	66.21	8.6	1.6	5` UTR	Cyp313b1 -	chr3R_15_8645001	chr3R_8645001	0.80	RAL-738
409	chr3R	8658737	8658802	P-element	10	2884	13	65	'4-9	46.21	10.2	1.2	intron	bel -	chr3R_13_8655001	chr3R_8655001	0.31	RAL-738
410	chr3R	8811171	8811199	1360	4	32	9	28	'5-4	65.48	10.3	0.8	intron	CG9837 -	chr3R_9_8810001	chr3R_8810001	0.56	RAL-738
411	chr3R	8816285	8816344	I-element	1	5344	12	59	'7-5	65.87	8.0	1.3	3` UTR	CG9821 -	chr3R_12_8815001	chr3R_8815001	0.58	RAL-738
412	chr3R	8856950	8857005	Quasimodo	13	7353	6	55	'5-1	71.11	9.4	0.6	intron	pyd -	chr3R_6_8855001	chr3R_8855001	0.83	RAL-738
413	chr3R	8922233	8922320	roo	8687	410	10	87	'6-4	68.31	5.0	1.7	intron	pyd -	chr3R_10_8920001	chr3R_8920001	0.60	RAL-738
414	chr3R	9202766	9202836	Tirant	405	8116	10	70	'9-1	64.71	3.2	2.4	intron	pum -	chr3R_10_9200001	chr3R_9200001	0.90	RAL-738
415	chr3R	9221984	9222120	297	6584	6585	20	136	'6-14	69.25	5.8	2.9	intron	pum -	chr3R_20_9220001	chr3R_9220001	0.30	RAL-738
416	chr3R	9284031	9284068	Rt1b	373	336	4	37	'2-2	68.52	10.2	0.4	intergenic	not near genes	chr3R_4_9280001	chr3R_9280001	0.50	RAL-738
417	chr3R	9928882	9928936	ZAM	2	432	11	54	'7-4	61.31	9.9	1.0	intron	Glut4EF +	chr3R_11_9925001	chr3R_9925001	0.64	RAL-738
418	chr3R	9937421	9937494	opus	2	7495	19	73	'9-10	66.60	9.7	1.8	intron	Glut4EF +	chr3R_19_9935001	chr3R_9935001	0.47	RAL-738
419	chr3R	10026234	10026298	FB	5	8	12	64	'9-3	62.48	10.9	1.0	intron	Mical -	chr3R_12_10025001	chr3R_10025001	0.75	RAL-738
420	chr3R	10089433	10089479	P-element	2883	2883	5	46	'3-2	42.04	13.3	0.3	5` UTR	CR45054 +	chr3R_5_10085001	chr3R_10085001	0.60	RAL-738
421	chr3R	10109340	10109453	P-element	27	2884	10	113	'2-8	44.64	8.2	1.1	intron	Fmr1 -	chr3R_10_10105001	chr3R_10105001	0.20	RAL-738
422	chr3R	10376254	10376273	F-element	388	407	4	19	'2-2	60.04	18.2	0.2	intron	Rfx -	chr3R_4_10375001	chr3R_10375001	0.50	RAL-738
423	chr3R	10446147	10446177	hobo	14	3	6	30	'5-1	69.53	12.7	0.4	intergenic	not near genes	chr3R_6_10445001	chr3R_10445001	0.83	RAL-738
424	chr3R	10485566	10485606	mdg1	21	417	4	40	'1-3	64.98	10.0	0.4	intergenic	not near genes	chr3R_4_10485001	chr3R_10485001	0.25	RAL-738
425	chr3R	11113987	11114053	1360	3	10	12	66	'8-4	65.89	9.3	1.2	intergenic	not near genes	chr3R_12_11110001	chr3R_11110001	0.67	RAL-738
426	chr3R	11151835	11151897	mdg3	5479	5252	13	62	'2-11	61.77	9.5	1.2	3` UTR	Ugt86Di -	chr3R_13_11150001	chr3R_11150001	0.15	RAL-738
427	chr3R	11302680	11302707	hobo	1	29	8	27	'3-5	63.28	17.7	0.4	intron	CR31386 -	chr3R_8_11300001	chr3R_11300001	0.38	RAL-738
428	chr3R	11479335	11479404	297	6585	386	6	69	'2-4	66.38	8.0	0.7	intergenic	not near genes	chr3R_6_11475001	chr3R_11475001	0.33	RAL-738
429	chr3R	11526779	11526858	pogo	2100	2	9	79	'2-7	63.00	7.4	1.1	intergenic	not near genes	chr3R_9_11525001	chr3R_11525001	0.22	RAL-738
430	chr3R	11553658	11553731	hopper	1410	3	7	73	'3-4	61.39	10.8	0.6	intergenic	CG14708 +	chr3R_7_11550001	chr3R_11550001	0.43	RAL-738
431	chr3R	11937210	11937278	pogo	2089	2	8	68	'4-4	67.62	5.8	1.2	intron	Cad87A -	chr3R_8_11935001	chr3R_11935001	0.50	RAL-738
432	chr3R	12001066	12001131	roo	410	8681	10	65	'6-4	69.43	10.6	0.9	intron,intron	Tk -,Ect3 +	chr3R_10_12000001	chr3R_12000001	0.60	RAL-738
433	chr3R	12084682	12084752	412	11	7546	10	70	'4-6	65.53	5.6	1.5	intron	CG14741 -	chr3R_10_12080001	chr3R_12080001	0.40	RAL-738
434	chr3R	12111682	12111743	roo	400	11	11	61	'7-4	67.42	6.8	1.4	intergenic	dpr17 +	chr3R_11_12110001	chr3R_12110001	0.64	RAL-738
435	chr3R	12514578	12514624	I-element	5332	258	8	46	'3-5	67.48	9.8	0.7	intron	Octbeta3R -	chr3R_8_12510001	chr3R_12510001	0.38	RAL-738
436	chr3R	12580233	12580308	297	393	6587	4	75	'2-2	65.87	8.4	0.4	intron	Octbeta2R -	chr3R_4_12580001	chr3R_12580001	0.50	RAL-738
437	chr3R	12606660	12606735	HMS-Beagle	6	246	13	75	'5-8	67.50	11.3	1.1	intergenic	not near genes	chr3R_13_12605001	chr3R_12605001	0.38	RAL-738
438	chr3R	12949446	12949506	hobo	8	2932	8	60	'6-2	64.02	9.9	0.7	intergenic	not near genes	chr3R_8_12945001	chr3R_12945001	0.75	RAL-738
439	chr3R	13119017	13119061	jockey	4678	4981	9	44	'4-5	62.20	13.2	0.6	intron	timeout +	chr3R_9_13115001	chr3R_13115001	0.44	RAL-738
440	chr3R	13274737	13274801	Juan	2	4205	19	64	'11-8	62.81	10.7	1.6	intergenic	not near genes	chr3R_19_13270001	chr3R_13270001	0.58	RAL-738
441	chr3R	13520842	13520860	hobo	4	2	6	18	'2-4	62.91	14.3	0.4	intergenic	not near genes	chr3R_6_13520001	chr3R_13520001	0.33	RAL-738
442	chr3R	13531171	13531251	roo	8665	409	20	80	'11-9	68.22	7.6	2.3	intergenic	not near genes	chr3R_20_13530001	chr3R_13530001	0.55	RAL-738
443	chr3R	13623095	13623174	mdg1	7458	7039	11	79	'8-3	64.22	8.8	1.1	intergenic	not near genes	chr3R_11_13620001	chr3R_13620001	0.73	RAL-738
444	chr3R	13826550	13826618	ZAM	7979	457	6	68	'4-2	60.98	8.1	0.7	intergenic	not near genes	chr3R_6_13825001	chr3R_13825001	0.67	RAL-738
445	chr3R	13858555	13858625	blood	7011	378	10	70	'6-4	63.40	11.1	0.8	intergenic	not near genes	chr3R_10_13855001	chr3R_13855001	0.60	RAL-738
446	chr3R	14038137	14038158	Juan	4056	4035	5	21	'4-1	63.59	0.7	2.9	intergenic	not near genes	chr3R_5_14035001	chr3R_14035001	0.80	RAL-738
447	chr3R	14049350	14049391	transib2	8	2820	8	41	'6-2	62.57	9.6	0.8	intergenic	not near genes	chr3R_8_14045001	chr3R_14045001	0.75	RAL-738
448	chr3R	14120533	14120594	1360	6	11	12	61	'3-9	64.19	6.2	1.7	intron	Abi -	chr3R_12_14120001	chr3R_14120001	0.25	RAL-738
449	chr3R	14379394	14379451	roo	408	8687	8	57	'3-5	71.98	7.9	0.9	intergenic	not near genes	chr3R_8_14375001	chr3R_14375001	0.38	RAL-738
450	chr3R	14678048	14678114	roo	8680	410	9	66	'2-7	67.66	9.1	0.9	intron	Meltrin -	chr3R_9_14675001	chr3R_14675001	0.22	RAL-738
451	chr3R	14882120	14882189	pogo	2089	3	9	69	'3-6	65.59	12.2	0.7	3` UTR	CG3631 +	chr3R_9_14880001	chr3R_14880001	0.33	RAL-738
452	chr3R	14926513	14926587	pogo	3	2092	11	74	'6-5	63.44	10.7	0.9	intergenic	not near genes	chr3R_11_14925001	chr3R_14925001	0.55	RAL-738
453	chr3R	14953217	14953289	hobo	2934	1	12	72	'2-10	63.35	11.4	1.0	intergenic	not near genes	chr3R_12_14950001	chr3R_14950001	0.17	RAL-738
454	chr3R	15030818	15030859	hobo	2922	19	4	41	'1-3	69.21	8.7	0.4	intergenic	not near genes	chr3R_4_15030001	chr3R_15030001	0.25	RAL-738
455	chr3R	15250344	15250416	hopper	1410	1412	7	72	'3-4	65.56	13.6	0.5	intron	CG42404 +	chr3R_7_15250001	chr3R_15250001	0.43	RAL-738
456	chr3R	15395198	15395215	297	6974	376	5	17	'3-2	65.77	10.9	0.4	intron	Rbp +	chr3R_5_15395001	chr3R_15395001	0.60	RAL-738
457	chr3R	15524403	15524482	pogo	4	2100	16	79	'10-6	59.64	6.3	2.2	intergenic	not near genes	chr3R_16_15520001	chr3R_15520001	0.62	RAL-738
458	chr3R	15882591	15882644	jockey	4980	4675	10	53	'7-3	63.58	8.5	1.1	intergenic	not near genes	chr3R_10_15880001	chr3R_15880001	0.70	RAL-738
459	chr3R	16043079	16043148	blood	369	4	15	69	'8-7	66.34	11.6	1.2	intergenic	CG10264 +	chr3R_15_16040001	chr3R_16040001	0.53	RAL-738
460	chr3R	16274017	16274060	pogo	29	2100	4	43	'3-1	69.33	4.8	0.7	intron	gish +	chr3R_4_16270001	chr3R_16270001	0.75	RAL-738
461	chr3R	16492600	16492663	pogo	7	2087	10	63	'8-2	65.95	8.5	1.1	intron	Cad89D -	chr3R_10_16490001	chr3R_16490001	0.80	RAL-738
462	chr3R	16535488	16535522	I-element	5344	27	11	34	'3-8	68.62	2.1	3.5	intron	CG42342 +	chr3R_11_16535001	chr3R_16535001	0.27	RAL-738
463	chr3R	16816873	16816950	rover	6955	7297	15	77	'6-9	65.47	5.4	2.3	intron	abd-A -	chr3R_15_16815001	chr3R_16815001	0.40	RAL-738
464	chr3R	17024803	17024880	mdg1	7040	7457	7	77	'2-5	61.61	13.8	0.5	intron	Pxd +	chr3R_7_17020001	chr3R_17020001	0.29	RAL-738
465	chr3R	17095929	17095946	17.6	6941	6958	4	17	'2-2	69.26	11.2	0.3	intron	cher -	chr3R_4_17095001	chr3R_17095001	0.50	RAL-738
466	chr3R	17116308	17116385	297	6586	395	16	77	'7-9	62.88	11.5	1.3	intron	cher -	chr3R_16_17115001	chr3R_17115001	0.44	RAL-738
467	chr3R	17265818	17265858	412	7531	7079	7	40	'4-3	66.20	9.3	0.7	3` UTR	CG44257 +	chr3R_7_17265001	chr3R_17265001	0.57	RAL-738
468	chr3R	17275054	17275130	roo	1	406	15	76	'5-10	68.95	11.8	1.2	intergenic	not near genes	chr3R_15_17275001	chr3R_17275001	0.33	RAL-738
469	chr3R	17389713	17389773	hobo	2	2923	7	60	'5-2	68.36	9.0	0.7	intron,3` UTR	Brf -,lute +	chr3R_7_17385001	chr3R_17385001	0.71	RAL-738
470	chr3R	17422647	17422709	mdg1	19	7459	6	62	'2-4	67.69	8.1	0.7	intergenic	CG14332 -	chr3R_6_17420001	chr3R_17420001	0.33	RAL-738
471	chr3R	17523278	17523348	flea	5006	4760	8	70	'3-5	68.23	4.7	1.4	intergenic	not near genes	chr3R_8_17520001	chr3R_17520001	0.38	RAL-738
472	chr3R	17642313	17642388	mdg1	419	4	8	75	'5-3	66.12	7.8	0.9	intron	CG43175 +	chr3R_8_17640001	chr3R_17640001	0.62	RAL-738
473	chr3R	17733259	17733336	INE-1	561	555	11	77	'4-7	75.91	4.8	1.9	intergenic	Lgr1 +,CG14321 +	chr3R_11_17730001	chr3R_17730001	0.36	RAL-738
474	chr3R	17823634	17823709	mdg1	417	7040	13	75	'10-3	63.04	12.2	1.0	intron	tinc +	chr3R_13_17820001	chr3R_17820001	0.77	RAL-738
475	chr3R	17840054	17840078	blood	7043	8	4	24	'1-3	63.33	14.0	0.3	intron	tinc +	chr3R_4_17840001	chr3R_17840001	0.25	RAL-738
476	chr3R	18073071	18073141	mdg1	7042	7452	14	70	'2-12	61.87	4.2	2.7	intergenic	not near genes	chr3R_14_18070001	chr3R_18070001	0.14	RAL-738
477	chr3R	18272121	18272151	1360	4	34	6	30	'2-4	68.21	14.2	0.4	exon	Vps39 -	chr3R_6_18270001	chr3R_18270001	0.33	RAL-738
478	chr3R	18467819	18467841	3S18	5765	5787	7	22	'4-3	62.91	8.0	0.8	intron	fru -	chr3R_7_18465001	chr3R_18465001	0.57	RAL-738
479	chr3R	18527766	18527838	Transpac	4929	311	10	72	'7-3	71.36	9.3	1.0	intron	fru -	chr3R_10_18525001	chr3R_18525001	0.70	RAL-738
480	chr3R	18681365	18681411	jockey	4980	12	12	46	'7-5	57.30	12.0	0.9	intron	CG7708 +	chr3R_12_18680001	chr3R_18680001	0.58	RAL-738
481	chr3R	18809737	18809801	Tabor	479	11	13	64	'6-7	63.39	7.1	1.6	intron	CG18208 -	chr3R_13_18805001	chr3R_18805001	0.46	RAL-738
482	chr3R	18843789	18843845	roo	396	13	7	56	'4-3	59.99	6.5	0.9	intron	CG18208 -	chr3R_7_18840001	chr3R_18840001	0.57	RAL-738
483	chr3R	18851034	18851054	17.6	7393	7413	4	20	'2-2	71.00	10.8	0.3	3` UTR	CR45633 -	chr3R_4_18850001	chr3R_18850001	0.50	RAL-738
484	chr3R	19258178	19258258	roo	409	1	16	80	'8-8	69.88	10.5	1.4	intron	CG14280 +	chr3R_16_19255001	chr3R_19255001	0.50	RAL-738
485	chr3R	19390464	19390549	HMS-Beagle	248	6795	18	85	'9-9	64.30	10.0	1.6	intron,exon	Ino80 -,CG18493 +	chr3R_18_19390001	chr3R_19390001	0.50	RAL-738
486	chr3R	19812938	19813005	roo	3	399	17	67	'7-10	68.97	10.2	1.5	intron	bnl -	chr3R_17_19810001	chr3R_19810001	0.41	RAL-738
487	chr3R	19949798	19949861	roo	401	8666	7	63	'5-2	64.28	8.9	0.7	intron	Hs6st -	chr3R_7_19945001	chr3R_19945001	0.71	RAL-738
488	chr3R	19967609	19967671	pogo	2090	6	8	62	'2-6	65.36	4.8	1.4	intron	Hs6st -	chr3R_8_19965001	chr3R_19965001	0.25	RAL-738
489	chr3R	20001551	20001616	roo	8665	393	8	65	'3-5	71.74	6.1	1.1	intron	Hs6st -	chr3R_8_20000001	chr3R_20000001	0.38	RAL-738
490	chr3R	20283729	20283752	hobo	9	12	6	23	'4-2	68.58	15.3	0.4	intron	cic +	chr3R_6_20280001	chr3R_20280001	0.67	RAL-738
491	chr3R	20375023	20375109	297	393	6580	10	86	'7-3	64.95	5.2	1.6	intergenic	not near genes	chr3R_10_20375001	chr3R_20375001	0.70	RAL-738
492	chr3R	20446466	20446499	hobo	2938	15	10	33	'3-7	62.41	13.9	0.7	intron	Gfrl -	chr3R_10_20445001	chr3R_20445001	0.30	RAL-738
493	chr3R	20456398	20456469	Max-element	298	7	10	71	'4-6	62.36	8.5	1.1	intron	Gfrl -	chr3R_10_20455001	chr3R_20455001	0.40	RAL-738
494	chr3R	20502365	20502438	roo	8664	9064	19	73	'12-7	67.30	9.4	1.8	intergenic	Dic2 -	chr3R_19_20500001	chr3R_20500001	0.63	RAL-738
495	chr3R	20520702	20520783	HMS-Beagle	247	2	17	81	'7-10	62.74	9.8	1.6	intergenic	not near genes	chr3R_17_20520001	chr3R_20520001	0.41	RAL-738
496	chr3R	20696594	20696621	BS	4993	5001	10	27	'5-5	61.23	15.0	0.6	intron	Oamb -	chr3R_10_20695001	chr3R_20695001	0.50	RAL-738
497	chr3R	20707964	20708014	I-element	5344	11	16	50	'9-7	65.43	10.3	1.4	intron	Oamb -	chr3R_16_20705001	chr3R_20705001	0.56	RAL-738
498	chr3R	21011437	21011514	opus	7496	110	16	77	'9-7	73.46	14.8	1.0	intron	Calx +	chr3R_16_21010001	chr3R_21010001	0.56	RAL-738
499	chr3R	21092899	21092966	mdg1	7458	12	10	67	'7-3	63.96	10.8	0.8	intron,intron	RhoGAP93B -,CR44178 +	chr3R_10_21090001	chr3R_21090001	0.70	RAL-738
500	chr3R	21229897	21229969	412	9	493	10	72	'6-4	64.71	12.8	0.7	3` UTR	e -	chr3R_10_21225001	chr3R_21225001	0.60	RAL-738
501	chr3R	21514841	21514902	Transpac	4923	310	9	61	'6-3	63.67	10.4	0.8	intergenic	not near genes	chr3R_9_21510001	chr3R_21510001	0.67	RAL-738
502	chr3R	21590347	21590419	1360	3385	3	13	72	'3-10	66.48	12.3	1.0	intron	InR -	chr3R_13_21590001	chr3R_21590001	0.23	RAL-738
503	chr3R	21701674	21701705	1731	4597	317	9	31	'7-2	64.25	6.7	1.2	intron	CG31176 -	chr3R_9_21700001	chr3R_21700001	0.78	RAL-738
504	chr3R	21990250	21990269	Juan	4038	4048	9	19	'5-4	57.78	16.8	0.5	intron	Eip93F +	chr3R_9_21990001	chr3R_21990001	0.56	RAL-738
505	chr3R	22220057	22220135	mdg1	418	7038	4	78	'2-2	65.67	8.5	0.4	intron	SKIP +	chr3R_4_22220001	chr3R_22220001	0.50	RAL-738
506	chr3R	22250164	22250220	hobo	7	2926	6	56	'5-1	61.27	8.2	0.7	intron	SKIP +	chr3R_6_22250001	chr3R_22250001	0.83	RAL-738
507	chr3R	22325810	22325873	mdg3	5257	241	13	63	'9-4	66.09	8.5	1.4	intergenic	not near genes	chr3R_13_22325001	chr3R_22325001	0.69	RAL-738
508	chr3R	22500387	22500471	opus	499	7115	12	84	'6-6	72.44	6.2	1.7	intron	Octbeta1R +	chr3R_12_22500001	chr3R_22500001	0.50	RAL-738
509	chr3R	22546346	22546427	Transpac	4920	310	14	81	'7-7	64.10	11.8	1.1	intron	AdipoR -	chr3R_14_22545001	chr3R_22545001	0.50	RAL-738
510	chr3R	22753223	22753300	copia	251	4868	8	77	'2-6	61.68	12.0	0.6	intron,intron	CG7029 +,Usp12-46 +	chr3R_8_22750001	chr3R_22750001	0.25	RAL-738
511	chr3R	22963543	22963583	blood	7362	7025	6	40	'1-5	61.68	10.0	0.5	intergenic	CR43655 -	chr3R_6_22960001	chr3R_22960001	0.17	RAL-738
512	chr3R	23114183	23114328	Stalker2	404	7248	7	145	'6-1	56.82	7.9	0.8	3` UTR	Rassf -	chr3R_7_23110001	chr3R_23110001	0.86	RAL-738
513	chr3R	23142805	23142866	pogo	19	2097	8	61	'3-5	68.86	12.0	0.6	intergenic	not near genes	chr3R_8_23140001	chr3R_23140001	0.38	RAL-738
514	chr3R	23163413	23163465	1360	11	3373	14	52	'9-5	67.38	13.6	1.0	intergenic	not near genes	chr3R_14_23160001	chr3R_23160001	0.64	RAL-738
515	chr3R	23550535	23550615	Transpac	311	3	23	80	'11-12	67.45	12.7	1.7	intergenic	not near genes	chr3R_23_23550001	chr3R_23550001	0.48	RAL-738
516	chr3R	23576921	23576998	opus	498	4	11	77	'5-6	65.91	10.8	0.9	intron	beat-IV +	chr3R_11_23575001	chr3R_23575001	0.45	RAL-738
517	chr3R	23601795	23601818	jockey	34	4969	5	23	'3-2	62.72	13.0	0.4	intergenic	not near genes	chr3R_5_23600001	chr3R_23600001	0.60	RAL-738
518	chr3R	23637293	23637339	blood	7366	7023	7	46	'1-6	59.82	9.3	0.7	intron	CG31145 -	chr3R_7_23635001	chr3R_23635001	0.14	RAL-738
519	chr3R	23724103	23724179	Transpac	310	4919	16	76	'11-5	65.39	10.8	1.4	intron	CG10365 +	chr3R_16_23720001	chr3R_23720001	0.69	RAL-738
520	chr3R	23904845	23904900	roo	408	9	5	55	'4-1	64.94	11.9	0.4	intron	sba -	chr3R_5_23900001	chr3R_23900001	0.80	RAL-738
521	chr3R	24002625	24002660	roo	9039	411	8	35	'5-3	68.18	12.7	0.6	intron	KrT95D -	chr3R_8_24000001	chr3R_24000001	0.62	RAL-738
522	chr3R	24073810	24073857	Stalker4	6973	399	7	47	'3-4	63.75	8.6	0.7	intron	4EHP -	chr3R_7_24070001	chr3R_24070001	0.43	RAL-738
523	chr3R	24662915	24662973	jockey	4987	4563	10	58	'2-8	58.05	6.5	1.3	intron	slo +	chr3R_10_24660001	chr3R_24660001	0.20	RAL-738
524	chr3R	24811636	24811691	FB	14	8	13	55	'6-7	60.07	11.2	1.1	intron	CG5807 -	chr3R_13_24810001	chr3R_24810001	0.46	RAL-738
525	chr3R	25316252	25316336	297	6581	395	10	84	'9-1	63.16	2.0	3.3	intergenic	CG10559 -,CG10553 -	chr3R_10_25315001	chr3R_25315001	0.90	RAL-738
526	chr3R	25458583	25458602	Doc	6	14	5	19	'2-3	64.54	12.9	0.4	intron	Fur1 -	chr3R_5_25455001	chr3R_25455001	0.40	RAL-738
527	chr3R	25647512	25647565	P-element	6	2874	10	53	'7-3	49.73	7.3	1.2	5` UTR	jigr1 +	chr3R_10_25645001	chr3R_25645001	0.70	RAL-738
528	chr3R	25711937	25712023	gypsy10	5641	347	4	86	'1-3	69.56	8.4	0.4	intron	LpR2 -	chr3R_4_25710001	chr3R_25710001	0.25	RAL-738
529	chr3R	25899392	25899473	HMS-Beagle	6796	246	16	81	'11-5	64.74	11.7	1.3	exon	MCO3 +	chr3R_16_25895001	chr3R_25895001	0.69	RAL-738
530	chr3R	25928571	25928625	hobo	5	2938	9	54	'7-2	60.81	3.7	1.9	intron	CCAP-R -	chr3R_9_25925001	chr3R_25925001	0.78	RAL-738
531	chr3R	26148690	26148755	roo	403	8674	13	65	'5-8	67.35	7.5	1.5	intergenic	not near genes	chr3R_13_26145001	chr3R_26145001	0.38	RAL-738
532	chr3R	26292379	26292425	hobo	10	2937	10	46	'8-2	68.89	6.5	1.3	intergenic	not near genes	chr3R_10_26290001	chr3R_26290001	0.80	RAL-738
533	chr3R	26293975	26294030	hobo	82	2710	12	55	'7-5	63.14	13.7	0.8	intergenic	not near genes	chr3R_12_26290001	chr3R_26290001	0.58	RAL-738
534	chr3R	26314871	26314950	copia	3	258	15	79	'8-7	66.71	6.8	1.9	intergenic	not near genes	chr3R_15_26310001	chr3R_26310001	0.53	RAL-738
535	chr3R	26502563	26502590	Doc	5	18	5	27	'2-3	65.21	18.0	0.3	intron	plum -	chr3R_5_26500001	chr3R_26500001	0.40	RAL-738
536	chr3R	26654727	26654750	roo	408	9043	4	23	'1-3	70.23	6.5	0.5	intron	beat-VII -	chr3R_4_26650001	chr3R_26650001	0.25	RAL-738
537	chr3R	26726879	26726942	roo	8663	397	14	63	'9-5	69.41	7.7	1.6	intergenic	CG14244 +,CG14246 +	chr3R_14_26725001	chr3R_26725001	0.64	RAL-738
538	chr3R	26759324	26759395	roo	8662	397	8	71	'4-4	65.32	9.3	0.8	intergenic	not near genes	chr3R_8_26755001	chr3R_26755001	0.50	RAL-738
539	chr3R	26761491	26761577	roo	8661	411	13	86	'7-6	67.57	7.2	1.6	intergenic	not near genes	chr3R_13_26760001	chr3R_26760001	0.54	RAL-738
540	chr3R	26769978	26770051	mdg1	3	7454	7	73	'3-4	63.24	6.7	0.9	intergenic	CR45563 +	chr3R_7_26765001	chr3R_26765001	0.43	RAL-738
541	chr3R	26828722	26828799	Burdock	6390	6140	10	77	'6-4	69.38	6.4	1.4	intron	Tl +	chr3R_10_26825001	chr3R_26825001	0.60	RAL-738
542	chr3R	26855330	26855398	Tabor	6847	480	21	68	'12-9	62.29	8.1	2.3	intron	Lerp -	chr3R_21_26855001	chr3R_26855001	0.57	RAL-738
543	chr3R	26968387	26968443	FB	9	2	5	56	'3-2	59.93	6.5	0.7	intron	CG5521 +	chr3R_5_26965001	chr3R_26965001	0.60	RAL-738
544	chr3R	27149351	27149429	Burdock	6136	6388	10	78	'8-2	65.01	9.1	1.0	intron	CG6051 -	chr3R_10_27145001	chr3R_27145001	0.80	RAL-738
545	chr3R	27150129	27150203	P-element	2886	1	10	74	'7-3	55.06	12.7	0.7	intron	CG6051 -	chr3R_10_27150001	chr3R_27150001	0.70	RAL-738
546	chr3R	27301502	27301532	jockey	10	20	7	30	'1-6	65.69	15.3	0.4	intron	CG3339 -	chr3R_7_27300001	chr3R_27300001	0.14	RAL-738
547	chr3R	27492379	27492495	mdg1	7038	422	10	116	'4-6	62.42	3.0	2.5	intergenic	not near genes	chr3R_10_27490001	chr3R_27490001	0.40	RAL-738
548	chr3R	27505105	27505124	jockey	28	9	7	19	'5-2	57.72	13.9	0.5	intergenic	not near genes	chr3R_7_27505001	chr3R_27505001	0.71	RAL-738
549	chr3R	27699976	27700048	P-element	2886	5	12	72	'9-3	44.96	11.4	1.0	exon	ALiX -	chr3R_12_27695001	chr3R_27695001	0.75	RAL-738
550	chr3R	27789661	27789690	412	1	467	7	29	'4-3	69.87	8.9	0.7	intron	CG34353 -	chr3R_7_27785001	chr3R_27785001	0.57	RAL-738
551	chr3R	27906959	27907024	1360	5	8	15	65	'6-9	67.64	9.2	1.5	intergenic	not near genes	chr3R_15_27905001	chr3R_27905001	0.40	RAL-738
552	chr3R	27966529	27966554	Juan	4056	4031	8	25	'6-2	57.29	14.4	0.5	intron	CG4849 +	chr3R_8_27965001	chr3R_27965001	0.75	RAL-738
553	chr3R	28051029	28051055	jockey	35	8	6	26	'3-3	63.94	9.8	0.6	intron	CG34362 +	chr3R_6_28050001	chr3R_28050001	0.50	RAL-738
554	chr3R	28388763	28388844	blood	7011	7388	10	81	'3-7	65.04	7.4	1.2	intergenic	not near genes	chr3R_10_28385001	chr3R_28385001	0.30	RAL-738
555	chr3R	28586591	28586608	jockey	4558	4560	6	17	'5-1	46.68	9.0	0.6	5` UTR	MRE23 +	chr3R_6_28585001	chr3R_28585001	0.83	RAL-738
556	chr3R	28639601	28639665	mdg1	7446	2	6	64	'4-2	55.39	8.4	0.6	intergenic	not near genes	chr3R_6_28635001	chr3R_28635001	0.67	RAL-738
557	chr3R	29079179	29079234	roo	394	8673	9	55	'7-2	65.72	6.5	1.2	intron	CG11873 +	chr3R_9_29075001	chr3R_29075001	0.78	RAL-738
558	chr3R	29087371	29087436	P-element	7	3	9	65	'2-7	51.16	9.0	0.9	intron	CG11873 +	chr3R_9_29085001	chr3R_29085001	0.22	RAL-738
559	chr3R	29240290	29240364	roo	406	5	12	74	'8-4	66.62	6.5	1.6	intron	CG31427 -	chr3R_12_29240001	chr3R_29240001	0.67	RAL-738
560	chr3R	29388994	29389047	McClintock	464	14	4	53	'3-1	68.00	5.7	0.6	intron	Ptp99A +	chr3R_4_29385001	chr3R_29385001	0.75	RAL-738
561	chr3R	29687313	29687375	roo	412	8691	4	62	'2-2	69.26	3.7	0.9	intron	Obp99c -	chr3R_4_29685001	chr3R_29685001	0.50	RAL-738
562	chr3R	29748793	29748867	P-element	1	2	9	74	'7-2	61.38	11.0	0.8	intron	ATPsyn-gamma -	chr3R_9_29745001	chr3R_29745001	0.78	RAL-738
563	chr3R	29881180	29881258	roo	407	1	14	78	'7-7	63.49	14.6	0.9	intron	CG31038 +	chr3R_14_29880001	chr3R_29880001	0.50	RAL-738
564	chr3R	29952713	29952780	invader4	2777	323	4	67	'2-2	70.33	11.5	0.3	intron	TkR99D -	chr3R_4_29950001	chr3R_29950001	0.50	RAL-738
565	chr3R	30206148	30206201	Ivk	5371	4	8	53	'3-5	63.19	9.7	0.7	intergenic	RpS7 -	chr3R_8_30205001	chr3R_30205001	0.38	RAL-738
566	chr3R	30443028	30443102	roo	8670	408	9	74	'5-4	66.88	10.5	0.8	intron	CG15537 -	chr3R_9_30440001	chr3R_30440001	0.56	RAL-738
567	chr3R	30516993	30517008	roo	388	403	5	15	'3-2	63.47	9.9	0.5	intergenic	jdp -,CG9698 +	chr3R_5_30515001	chr3R_30515001	0.60	RAL-738
568	chr3R	30571650	30571727	Burdock	254	6140	6	77	'1-5	67.55	9.8	0.6	intron	tmod +	chr3R_6_30570001	chr3R_30570001	0.17	RAL-738
569	chr3R	30958465	30958528	Max-element	157	302	10	63	'5-5	61.67	6.3	1.4	intergenic	not near genes	chr3R_10_30955001	chr3R_30955001	0.50	RAL-738
570	chr3R	31067608	31067689	opus	7113	499	14	81	'5-9	70.37	9.8	1.3	intron	Sox100B +	chr3R_14_31065001	chr3R_31065001	0.36	RAL-738
571	chr3R	31450109	31450139	jockey	11	11	8	30	'5-3	59.91	17.3	0.4	intron	Gprk2 +	chr3R_8_31450001	chr3R_31450001	0.62	RAL-738
572	chr3R	31635012	31635069	blood	10	7382	9	57	'6-3	63.00	8.4	1.0	intron	kek6 +	chr3R_9_31635001	chr3R_31635001	0.67	RAL-738
573	chr3R	31817739	31817822	roo	8664	411	17	83	'7-10	65.69	11.0	1.4	intron	RhoGAP100F +	chr3R_17_31815001	chr3R_31815001	0.41	RAL-738
574	chr3R	31883745	31883775	jockey	4694	4672	5	30	'3-2	62.20	10.2	0.4	intron	heph -	chr3R_5_31880001	chr3R_31880001	0.60	RAL-738
575	chr3R	31996520	31996569	copia	4879	240	12	49	'5-7	66.13	14.4	0.8	intron	heph -	chr3R_12_31995001	chr3R_31995001	0.42	RAL-738
576	chr4	240151	240213	I-element	5350	5	16	62	'8-8	68.50	4.8	2.8	intron	CG1674 +	chr4_16_240001	chr4_240001	0.50	RAL-738
577	chr4	311205	311236	1360	2	3356	8	31	'4-4	68.49	5.6	1.2	3` UTR	Zip102B -	chr4_8_310001	chr4_310001	0.50	RAL-738
578	chr4	311560	311591	1360	32	3388	12	31	'7-5	66.02	5.6	1.8	3` UTR	Zip102B -	chr4_12_310001	chr4_310001	0.58	RAL-738
579	chr4	685396	685428	opus	7099	128	10	32	'5-5	67.61	20.5	0.5	exon	CG11360 +	chr4_10_685001	chr4_685001	0.50	RAL-738
580	chrX	900061	900137	hopper	1414	4	16	76	'6-10	64.29	10.2	1.4	intron	CG43867 -	chrX_16_900001	chrX_900001	0.38	RAL-738
581	chrX	989903	989923	I-element	5344	5339	8	20	'4-4	62.81	7.7	0.9	intergenic	not near genes	chrX_8_985001	chrX_985001	0.50	RAL-738
582	chrX	1001006	1001083	Burdock	6137	255	14	77	'5-9	65.15	7.5	1.6	intergenic	not near genes	chrX_14_1000001	chrX_1000001	0.36	RAL-738
583	chrX	1948546	1948583	hopper	1400	1413	8	37	'4-4	68.31	8.5	0.8	intron	Hr4 +	chrX_8_1945001	chrX_1945001	0.50	RAL-738
584	chrX	2745150	2745217	FB	3	7	18	67	'8-10	63.30	7.3	2.2	intron	kirre +	chrX_18_2745001	chrX_2745001	0.44	RAL-738
585	chrX	2906715	2906780	Quasimodo	7354	3	7	65	'1-6	65.22	5.5	1.1	intron	kirre +	chrX_7_2905001	chrX_2905001	0.14	RAL-738
586	chrX	3008034	3008119	Transpac	309	4919	13	85	'9-4	66.51	4.0	2.6	intron	kirre +	chrX_13_3005001	chrX_3005001	0.69	RAL-738
587	chrX	3595295	3595359	412	7534	5	10	64	'3-7	58.48	6.4	1.4	intron	AstA-R1 +	chrX_10_3595001	chrX_3595001	0.30	RAL-738
588	chrX	3629494	3629575	flea	255	4757	19	81	'5-14	64.15	5.2	3.1	intron	AstA-R1 +	chrX_19_3625001	chrX_3625001	0.26	RAL-738
589	chrX	4060762	4060834	mdg3	236	5251	13	72	'4-9	67.18	7.4	1.5	intergenic	not near genes	chrX_13_4060001	chrX_4060001	0.31	RAL-738
590	chrX	4147100	4147181	roo	2	411	13	81	'6-7	64.28	6.2	1.8	intron	Fas2 -	chrX_13_4145001	chrX_4145001	0.46	RAL-738
591	chrX	4292443	4292514	hopper	1412	1408	14	71	'11-3	65.42	5.4	2.2	intergenic	not near genes	chrX_14_4290001	chrX_4290001	0.79	RAL-738
592	chrX	4331622	4331682	FB	3	13	9	60	'5-4	60.87	4.3	1.7	intron	norpA +	chrX_9_4330001	chrX_4330001	0.56	RAL-738
593	chrX	5018712	5018774	Juan	4207	4027	15	62	'8-7	58.87	3.7	3.2	intron	CR44833 -	chrX_15_5015001	chrX_5015001	0.53	RAL-738
594	chrX	5257197	5257250	hobo	17	2931	10	53	'7-3	67.82	4.7	1.8	intergenic	not near genes	chrX_10_5255001	chrX_5255001	0.70	RAL-738
595	chrX	6344494	6344578	Transpac	311	4918	15	84	'10-5	70.14	6.2	2.1	intergenic	not near genes	chrX_15_6340001	chrX_6340001	0.67	RAL-738
596	chrX	7066355	7066400	hobo	2	2936	11	45	'6-5	69.07	4.4	2.0	intergenic	CG12541 -	chrX_11_7065001	chrX_7065001	0.55	RAL-738
597	chrX	7246703	7246774	412	7542	6	16	71	'5-11	59.70	5.4	2.5	intron	CR44357 -	chrX_16_7245001	chrX_7245001	0.31	RAL-738
598	chrX	8027445	8027490	Juan	4198	6	7	45	'2-5	59.71	5.3	1.1	intergenic	Tbh +	chrX_7_8025001	chrX_8025001	0.29	RAL-738
599	chrX	8325792	8325866	roo	411	8673	14	74	'9-5	65.97	3.9	2.9	intron	nAChRalpha3 -	chrX_14_8325001	chrX_8325001	0.64	RAL-738
600	chrX	8364678	8364700	jockey	11	22	11	22	'6-5	58.83	11.3	0.9	intron	nAChRalpha3 -	chrX_11_8360001	chrX_8360001	0.55	RAL-738
601	chrX	8544724	8544802	roo	410	8663	12	78	'6-6	47.65	2.7	3.2	intron	Nrg +	chrX_12_8540001	chrX_8540001	0.50	RAL-738
602	chrX	8822021	8822087	opus	10	7498	15	66	'3-12	68.35	2.2	4.7	intergenic	not near genes	chrX_15_8820001	chrX_8820001	0.20	RAL-738
603	chrX	9342624	9342673	FB	1	6	12	49	'4-8	66.01	4.6	2.1	intron	CG34449 -	chrX_12_9340001	chrX_9340001	0.33	RAL-738
604	chrX	9435290	9435355	Transpac	4919	5212	16	65	'13-3	62.53	3.2	3.8	intron	mgl -	chrX_16_9435001	chrX_9435001	0.81	RAL-738
605	chrX	9467210	9467285	HMS-Beagle	3	7040	14	75	'8-6	63.66	4.0	2.8	intron	mgl -	chrX_14_9465001	chrX_9465001	0.57	RAL-738
606	chrX	9584868	9584891	S-element	32	1707	6	23	'2-4	73.11	2.0	2.0	intergenic	CR45541 +	chrX_6_9580001	chrX_9580001	0.33	RAL-738
607	chrX	9856140	9856172	jockey	35	5	13	32	'8-5	63.58	6.5	1.7	intergenic	not near genes	chrX_13_9855001	chrX_9855001	0.62	RAL-738
608	chrX	10021312	10021394	roo	411	8664	25	82	'12-13	66.15	5.3	4.0	intron	Cht6 +	chrX_25_10020001	chrX_10020001	0.48	RAL-738
609	chrX	10119576	10119626	FB	16	9	13	50	'5-8	57.25	6.6	1.7	intron,intron	RhoU +,CR44894 -	chrX_13_10115001	chrX_10115001	0.38	RAL-738
610	chrX	10210715	10210794	Tirant	399	8105	10	79	'5-5	65.86	8.4	1.1	intron	CG15309 -	chrX_10_10210001	chrX_10210001	0.50	RAL-738
611	chrX	10393266	10393337	pogo	2089	1	18	71	'6-12	67.71	6.4	2.4	intron	flw +	chrX_18_10390001	chrX_10390001	0.33	RAL-738
612	chrX	10682897	10682961	pogo	10	2091	14	64	'7-7	66.25	4.8	2.4	intron	X11Lbeta +	chrX_14_10680001	chrX_10680001	0.50	RAL-738
613	chrX	10759837	10759914	pogo	2099	5	10	77	'7-3	66.85	4.0	2.0	intergenic	Tango5 -	chrX_10_10755001	chrX_10755001	0.70	RAL-738
614	chrX	11190949	11191046	Tc1	1480	1477	4	97	'3-1	82.46	4.4	0.7	intergenic	not near genes	chrX_4_11190001	chrX_11190001	0.75	RAL-738
615	chrX	11463628	11463698	pogo	2099	12	12	70	'5-7	64.54	6.9	1.5	intron	CG43155 +	chrX_12_11460001	chrX_11460001	0.42	RAL-738
616	chrX	11696665	11696686	TLD2_LTR	95	97	4	21	'1-3	62.64	6.1	0.6	intron	PhKgamma +	chrX_4_11695001	chrX_11695001	0.25	RAL-738
617	chrX	12007068	12007093	P-element	23	2885	5	25	'3-2	51.35	12.5	0.4	intergenic	CG1806 +	chrX_5_12005001	chrX_12005001	0.60	RAL-738
618	chrX	12079741	12079810	roo	9068	8	15	69	'6-9	60.97	5.4	2.3	intron,intron	CR43960 +,Ten-a +	chrX_15_12075001	chrX_12075001	0.40	RAL-738
619	chrX	12296789	12296867	transib2	2640	2642	4	78	'3-1	65.46	3.7	0.9	intron	Ten-a +	chrX_4_12295001	chrX_12295001	0.75	RAL-738
620	chrX	12618106	12618175	roo	409	8668	19	69	'11-8	65.87	5.4	3.0	intron	CG11085 +	chrX_19_12615001	chrX_12615001	0.58	RAL-738
621	chrX	12622250	12622303	P-element	12	7	13	53	'5-8	50.29	6.1	1.8	5` UTR	CR44568 +	chrX_13_12620001	chrX_12620001	0.38	RAL-738
622	chrX	12632025	12632101	hobo	2709	2	30	76	'5-25	62.67	11.2	2.5	intron	Tomosyn +	chrX_30_12630001	chrX_12630001	0.17	RAL-738
623	chrX	12665856	12665937	Burdock	253	6135	18	81	'8-10	65.64	4.3	3.4	intron	Tis11 +	chrX_18_12665001	chrX_12665001	0.44	RAL-738
624	chrX	13134869	13134920	BS	5075	5006	5	51	'2-3	58.64	2.4	1.5	intergenic	CG15717 +,MFS10 +	chrX_5_13130001	chrX_13130001	0.40	RAL-738
625	chrX	13395868	13395890	3S18	6086	6103	4	22	'2-2	63.59	8.0	0.4	5` UTR	CR44621 +	chrX_4_13395001	chrX_13395001	0.50	RAL-738
626	chrX	13561457	13561485	Stalker2	7624	404	12	28	'9-3	59.24	5.6	1.8	intergenic	CG32633 +	chrX_12_13560001	chrX_13560001	0.75	RAL-738
627	chrX	13950194	13950275	springer	7138	7521	12	81	'4-8	64.28	4.8	2.1	intron	mamo -	chrX_12_13950001	chrX_13950001	0.33	RAL-738
628	chrX	14011378	14011443	pogo	1	2085	12	65	'3-9	69.99	4.1	2.4	intergenic	not near genes	chrX_12_14010001	chrX_14010001	0.25	RAL-738
629	chrX	14801009	14801074	copia	257	3	6	65	'4-2	56.44	4.4	1.1	intron	rut -	chrX_6_14800001	chrX_14800001	0.67	RAL-738
630	chrX	14827579	14827595	G2	3011	3021	5	16	'1-4	63.35	6.2	0.7	3` UTR	CG14408 -	chrX_5_14825001	chrX_14825001	0.20	RAL-738
631	chrX	14970215	14970299	roo	8662	409	18	84	'8-10	67.26	5.6	2.7	intron	eag +	chrX_18_14970001	chrX_14970001	0.44	RAL-738
632	chrX	15026017	15026072	FB	6	13	11	55	'8-3	61.26	5.6	1.7	intron,intron	hiw -,be +	chrX_11_15025001	chrX_15025001	0.73	RAL-738
633	chrX	15234344	15234421	opus	3	7500	10	77	'4-6	67.00	7.2	1.2	intergenic	not near genes	chrX_10_15230001	chrX_15230001	0.40	RAL-738
634	chrX	15261340	15261414	Stalker2	405	8	19	74	'11-8	64.73	7.6	2.2	intergenic	not near genes	chrX_19_15260001	chrX_15260001	0.58	RAL-738
635	chrX	15431724	15431801	412	4	7546	13	77	'3-10	64.57	2.5	3.7	intron	Cngl -	chrX_13_15430001	chrX_15430001	0.23	RAL-738
636	chrX	15530503	15530569	roo	12	406	18	66	'8-10	71.05	5.2	2.9	intron	Ac13E -	chrX_18_15530001	chrX_15530001	0.44	RAL-738
637	chrX	16515701	16515784	roo	8663	411	22	83	'11-11	66.91	7.2	2.7	intron	para -	chrX_22_16515001	chrX_16515001	0.50	RAL-738
638	chrX	17026146	17026163	roo	9055	409	4	17	'3-1	57.05	4.5	0.7	intron	CG45002 -	chrX_4_17025001	chrX_17025001	0.75	RAL-738
639	chrX	17692290	17692364	roo	403	8664	21	74	'10-11	62.65	9.1	2.1	intron	chas -	chrX_21_17690001	chrX_17690001	0.48	RAL-738
640	chrX	17837965	17838043	S-element	1714	1712	12	78	'6-6	64.62	5.9	1.7	intron	CG6398 +	chrX_12_17835001	chrX_17835001	0.50	RAL-738
641	chrX	18150510	18150530	412	7527	494	6	20	'3-3	60.35	6.6	0.8	intergenic	not near genes	chrX_6_18150001	chrX_18150001	0.50	RAL-738
642	chrX	18193735	18193789	hopper	1399	1409	7	54	'4-3	58.40	6.2	1.0	intron	Frq2 +	chrX_7_18190001	chrX_18190001	0.57	RAL-738
643	chrX	18320090	18320113	jockey	10	12	13	23	'5-8	59.57	8.2	1.4	intron	CG6023 -	chrX_13_18320001	chrX_18320001	0.38	RAL-738
644	chrX	18587795	18587875	roo	410	1	18	80	'7-11	67.19	5.7	2.7	intergenic	not near genes	chrX_18_18585001	chrX_18585001	0.39	RAL-738
645	chrX	19052599	19052658	roo	1	399	18	59	'11-7	64.12	7.3	2.2	3` UTR	Diedel3 +	chrX_18_19050001	chrX_19050001	0.61	RAL-738
646	chrX	19316753	19316822	FB	6	1	18	69	'11-7	63.69	5.7	2.7	intron	out -	chrX_18_19315001	chrX_19315001	0.61	RAL-738
647	chrX	19473075	19473121	jockey	4982	4767	11	46	'8-3	60.34	7.0	1.4	intergenic	not near genes	chrX_11_19470001	chrX_19470001	0.73	RAL-738
648	chrX	19673586	19673614	diver	5860	5831	9	28	'3-6	59.04	15.3	0.6	intron	et -	chrX_9_19670001	chrX_19670001	0.33	RAL-738
649	chrX	19887098	19887281	P-element	16	9	7	183	'1-6	50.31	6.6	0.9	intron,exon	Hers +,amn -	chrX_7_19885001	chrX_19885001	0.14	RAL-738
650	chrX	20396865	20396897	Rt1b	5142	5110	14	32	'4-10	62.11	4.9	2.4	intron	HERC2 +	chrX_14_20395001	chrX_20395001	0.29	RAL-738
651	chrX	20599075	20599156	pogo	7	2098	10	81	'6-4	67.21	5.9	1.4	intron	RunxA -	chrX_10_20595001	chrX_20595001	0.60	RAL-738
652	chrX	20860804	20860876	hobo	2938	5	13	72	'4-9	66.57	2.7	3.5	intron	shakB -	chrX_13_20860001	chrX_20860001	0.31	RAL-738
653	chrX	20952926	20952953	jockey	4992	4966	8	27	'5-3	62.30	6.3	1.1	intergenic	not near genes	chrX_8_20950001	chrX_20950001	0.62	RAL-738
654	chrX	21087587	21087614	mdg3	5254	33	5	27	'1-4	71.24	3.9	1.0	intergenic	not near genes	chrX_5_21085001	chrX_21085001	0.20	RAL-738
655	chrX	21399398	21399457	pogo	1	2095	14	59	'6-8	66.08	6.0	2.0	intergenic	not near genes	chrX_14_21395001	chrX_21395001	0.43	RAL-738
656	chrX	21667901	21667919	gypsy2	25	16	5	18	'2-3	62.95	0.7	2.9	intergenic	not near genes	chrX_5_21665001	chrX_21665001	0.40	RAL-738
657	chrX	21907790	21907813	accord	381	7203	4	23	'1-3	67.90	0.0	4.0	intergenic	not near genes	chrX_4_21905001	chrX_21905001	0.25	RAL-738
658	chrX	22203286	22203306	roo	14	9041	5	20	'2-3	76.91	1.4	2.1	intergenic	not near genes	chrX_5_22200001	chrX_22200001	0.40	RAL-738
659	chrX	22442648	22442675	invader1	204	3805	4	27	'1-3	63.17	2.7	1.1	intergenic	not near genes	chrX_4_22440001	chrX_22440001	0.25	RAL-738
660	chrX	22513649	22513668	INE-1	215	215	5	19	'1-4	64.50	9.3	0.5	intergenic	not near genes	chrX_5_22510001	chrX_22510001	0.20	RAL-738
661	chrX	22550931	22551011	pogo	2098	1	8	80	'4-4	63.00	5.5	1.2	intergenic	not near genes	chrX_8_22550001	chrX_22550001	0.50	RAL-738
662	chrX	22916249	22916313	Transpac	4925	5217	18	64	'10-8	61.05	6.2	2.5	intergenic	not near genes	chrX_18_22915001	chrX_22915001	0.56	RAL-738
663	chrX	22944437	22944461	opus	7498	471	13	24	'6-7	67.35	5.1	2.1	intergenic	not near genes	chrX_13_22940001	chrX_22940001	0.46	RAL-738
664	chrY	975840	975907	1360	3379	2	4	67	'2-2	58.00	89.2	0.0	intergenic	not near genes	chrY_4_975001	chrY_975001	0.50	RAL-738
665	chrY	2720331	2720355	opus	494	498	8	24	'3-5	64.78	1.3	3.5	intergenic	not near genes	chrY_8_2720001	chrY_2720001	0.38	RAL-738
666	chrY	3648867	3648887	Stalker2	7451	7471	8	20	'5-3	66.27	4.5	1.5	intergenic	not near genes	chrY_8_3645001	chrY_3645001	0.62	RAL-738