SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47475 47491 chr2L 52563 52595 jockey 10 5102 7.5 6.5 7.0 1.2 5120 chr2L 47475 intron Cda5 - chr2L 50035 intron Cda5 - chr2L 52595 intron Cda5 - chr2L_10_50001 chr2L_50001 RAL-738 2 chr2L 262731 262767 chr2L 262808 262843 19 75 3.0 4.5 3.8 4.0 112 chr2L 262731 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L 262787 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L 262843 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L_19_260001 chr2L_260001 RAL-738 3 chr2L 263301 263319 chr2L 263446 263461 7 145 5.5 4.5 5.0 1.2 160 chr2L 263301 intron,3` UTR CG3645 -,CG17075 - chr2L 263381 intron,3` UTR CG3645 -,CG17075 - chr2L 263461 intron,3` UTR CG3645 -,CG17075 - chr2L_7_260001 chr2L_260001 RAL-738 4 chr2L 316492 316525 chr2L 316665 316689 15 171 3.0 2.0 2.5 4.3 197 chr2L 316492 intron Plc21C + chr2L 316590 intron Plc21C + chr2L 316689 intron Plc21C + chr2L_15_315001 chr2L_315001 RAL-738 5 chr2L 325131 325152 chr2L 325208 325229 9 74 9.5 8.0 8.8 0.9 98 chr2L 325131 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325229 intron Plc21C + chr2L_9_325001 chr2L_325001 RAL-738 6 chr2L 347890 347919 chr2L 355390 355419 blood 14 7498 2.5 4.5 3.5 3.1 7529 chr2L 347890 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_14_350001 chr2L_350001 RAL-738 7 chr2L 407948 407973 chr2L 408029 408054 13 78 4.0 4.5 4.2 2.5 106 chr2L 407948 3` UTR RpI135 + chr2L 408001 intergenic AP-2alpha -,RpI135 + chr2L 408054 3` UTR AP-2alpha - chr2L_13_405001 chr2L_405001 RAL-738 8 chr2L 666278 666307 chr2L 666354 666371 5 65 2.5 0.5 1.5 2.0 93 chr2L 666278 intron ds - chr2L 666324 intron ds - chr2L 666371 intron ds - chr2L_5_665001 chr2L_665001 RAL-738 9 chr2L 686923 686952 chr2L 695956 695965 roo 11 9035 2.0 2.0 2.0 3.7 9042 chr2L 686923 intron ds - chr2L 691444 intron ds - chr2L 695965 intron ds - chr2L_11_690001 chr2L_690001 RAL-738 10 chr2L 741556 741584 chr2L 741632 741661 11 73 1.5 4.5 3.0 2.8 105 chr2L 741556 intron Eaat2 - chr2L 741608 intron Eaat2 - chr2L 741661 intron Eaat2 - chr2L_11_740001 chr2L_740001 RAL-738 11 chr2L 749600 749633 chr2L 749684 749718 7 82 1.0 1.0 1.0 3.5 118 chr2L 749600 intergenic GABA-B-R3 + chr2L 749659 intergenic GABA-B-R3 + chr2L 749718 intergenic GABA-B-R3 + chr2L_7_745001 chr2L_745001 RAL-738 12 chr2L 763598 763629 chr2L 763670 763674 10 69 2.5 3.0 2.8 2.6 76 chr2L 763598 intergenic not near genes chr2L 763636 intergenic not near genes chr2L 763674 intergenic not near genes chr2L_10_760001 chr2L_760001 RAL-738 13 chr2L 770467 770486 chr2L 772244 772246 Bari1 5 1772 5.5 3.0 4.2 1.0 1779 chr2L 770467 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772246 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-738 14 chr2L 795259 795291 chr2L 795369 795393 11 104 3.5 1.0 2.2 3.4 134 chr2L 795259 intergenic not near genes chr2L 795326 intergenic not near genes chr2L 795393 intergenic not near genes chr2L_11_795001 chr2L_795001 RAL-738 15 chr2L 877851 877875 chr2L 877923 877939 8 76 3.0 7.0 5.0 1.3 88 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877895 3` UTR,intron CG15824 -,ninaA + chr2L 877939 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-738 16 chr2L 927862 927882 chr2L 928014 928034 6 149 4.5 6.5 5.5 0.9 172 chr2L 927862 intron CG4341 + chr2L 927948 intron CG4341 + chr2L 928034 intron CG4341 + chr2L_6_925001 chr2L_925001 RAL-738 17 chr2L 964556 964563 chr2L 964639 964647 7 84 8.0 6.0 7.0 0.9 91 chr2L 964556 intergenic not near genes chr2L 964602 intergenic not near genes chr2L 964647 intergenic not near genes chr2L_7_960001 chr2L_960001 RAL-738 18 chr2L 964564 964573 chr2L 964637 964657 8 80 7.5 5.5 6.5 1.1 93 chr2L 964564 intergenic not near genes chr2L 964610 intergenic not near genes chr2L 964657 intergenic not near genes chr2L_8_960001 chr2L_960001 RAL-738 19 chr2L 976877 976911 chr2L 984513 984547 roo 17 7635 4.0 1.0 2.5 4.9 7670 chr2L 976877 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_17_980001 chr2L_980001 RAL-738 20 chr2L 1041353 1041366 chr2L 1041441 1041454 6 88 7.0 8.0 7.5 0.7 101 chr2L 1041353 intron IA-2 - chr2L 1041404 intron IA-2 - chr2L 1041454 intron IA-2 - chr2L_6_1040001 chr2L_1040001 RAL-738 21 chr2L 1042619 1042630 chr2L 1042696 1042707 4 77 5.0 0.0 2.5 1.1 88 chr2L 1042619 intron IA-2 - chr2L 1042663 intron IA-2 - chr2L 1042707 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-738 22 chr2L 1137655 1137687 chr2L 1137835 1137867 12 178 1.5 6.5 4.0 2.4 212 chr2L 1137655 intron CG4577 + chr2L 1137761 intron CG4577 + chr2L 1137867 intron CG4577 + chr2L_12_1135001 chr2L_1135001 RAL-738 23 chr2L 1156859 1156872 chr2L 1156964 1156965 11 102 6.0 4.0 5.0 1.8 106 chr2L 1156859 intron capt - chr2L 1156912 intron capt - chr2L 1156965 intron capt - chr2L_11_1155001 chr2L_1155001 RAL-738 24 chr2L 1203927 1203951 chr2L 1204010 1204035 13 82 3.0 7.5 5.2 2.1 108 chr2L 1203927 intergenic CG14342 + chr2L 1203981 intergenic CG14342 + chr2L 1204035 intergenic CG14342 + chr2L_13_1200001 chr2L_1200001 RAL-738 25 chr2L 1220139 1220146 chr2L 1227598 1227612 blood 6 7465 11.5 3.0 7.2 0.7 7473 chr2L 1220139 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227612 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-738 26 chr2L 1220147 1220161 chr2L 1227593 1227621 blood 12 7460 5.5 3.0 4.2 2.3 7474 chr2L 1220147 intron CG42329 + chr2L 1223884 intron CG42329 + chr2L 1227621 intron CG42329 + chr2L_12_1220001 chr2L_1220001 RAL-738 27 chr2L 1244411 1244437 chr2L 1244488 1244503 8 76 4.0 5.0 4.5 1.5 92 chr2L 1244411 intergenic not near genes chr2L 1244457 intergenic not near genes chr2L 1244503 intergenic not near genes chr2L_8_1240001 chr2L_1240001 RAL-738 28 chr2L 1245533 1245567 chr2L 1245619 1245653 18 78 3.0 5.5 4.2 3.5 120 chr2L 1245533 intergenic not near genes chr2L 1245593 intergenic not near genes chr2L 1245653 intergenic not near genes chr2L_18_1245001 chr2L_1245001 RAL-738 29 chr2L 1261135 1261245 chr2L 1261217 1261326 10 81 1.0 1.0 1.0 5.0 191 chr2L 1261135 intron robo3 + chr2L 1261230 intron robo3 + chr2L 1261326 intron robo3 + chr2L_10_1260001 chr2L_1260001 RAL-738 30 chr2L 1322025 1322051 chr2L 1322114 1322140 8 87 3.0 3.0 3.0 2.0 115 chr2L 1322025 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322140 intergenic not near genes chr2L_8_1320001 chr2L_1320001 RAL-738 31 chr2L 1458249 1458258 chr2L 1458326 1458335 4 76 14.5 15.0 14.8 0.3 86 chr2L 1458249 intergenic not near genes chr2L 1458292 intergenic not near genes chr2L 1458335 intergenic not near genes chr2L_4_1455001 chr2L_1455001 RAL-738 32 chr2L 1549949 1549968 chr2L 1550290 1550309 5 341 4.5 4.0 4.2 1.0 360 chr2L 1549949 intergenic not near genes chr2L 1550129 intergenic not near genes chr2L 1550309 intergenic not near genes chr2L_5_1550001 chr2L_1550001 RAL-738 33 chr2L 1570689 1570719 chr2L 1573556 1573591 F-element 9 2869 3.5 4.0 3.8 1.9 2902 chr2L 1570689 intron haf + chr2L 1572140 intron haf + chr2L 1573591 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-738 34 chr2L 1590959 1590983 chr2L 1591035 1591048 14 74 7.0 5.0 6.0 2.0 89 chr2L 1590959 intron haf + chr2L 1591004 intron haf + chr2L 1591048 intron haf + chr2L_14_1590001 chr2L_1590001 RAL-738 35 chr2L 1613497 1613531 chr2L 1613744 1613778 12 243 4.0 6.0 5.0 2.0 281 chr2L 1613497 intron RFeSP - chr2L 1613638 intron RFeSP - chr2L 1613778 intron RFeSP - chr2L_12_1610001 chr2L_1610001 RAL-738 36 chr2L 1655339 1655373 chr2L 1655429 1655463 11 87 4.0 4.5 4.2 2.1 124 chr2L 1655339 intron chinmo + chr2L 1655401 intron chinmo + chr2L 1655463 intron chinmo + chr2L_11_1655001 chr2L_1655001 RAL-738 37 chr2L 1678981 1678991 chr2L 1686446 1686456 blood 5 7465 6.0 9.0 7.5 0.6 7475 chr2L 1678981 intron chinmo + chr2L 1682718 intron chinmo + chr2L 1686456 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-738 38 chr2L 1678994 1679009 chr2L 1686445 1686462 blood 10 7460 2.5 8.0 5.2 1.6 7468 chr2L 1678994 intron chinmo + chr2L 1682728 intron chinmo + chr2L 1686462 intron chinmo + chr2L_10_1680001 chr2L_1680001 RAL-738 39 chr2L 1711362 1711369 chr2L 1711680 1711684 mdg3 5 320 8.0 7.5 7.8 0.6 322 chr2L 1711362 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711523 3` UTR frtz - chr2L 1711684 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-738 40 chr2L 1883417 1883446 chr2L 1883999 1884026 8 575 3.5 2.0 2.8 2.1 609 chr2L 1883417 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_8_1880001 chr2L_1880001 RAL-738 41 chr2L 1887794 1887817 chr2L 1887876 1887894 7 80 5.0 11.0 8.0 0.8 100 chr2L 1887794 intron CG7337 + chr2L 1887844 intron CG7337 + chr2L 1887894 intron CG7337 + chr2L_7_1885001 chr2L_1885001 RAL-738 42 chr2L 1933661 1933670 chr2L 1933742 1933751 6 80 7.0 0.0 3.5 1.3 90 chr2L 1933661 intron CG7337 + chr2L 1933706 intron CG7337 + chr2L 1933751 intron CG7337 + chr2L_6_1930001 chr2L_1930001 RAL-738 43 chr2L 1957924 1957956 chr2L 1958006 1958037 7 81 7.0 4.0 5.5 1.1 113 chr2L 1957924 intron erm - chr2L 1957980 intron erm - chr2L 1958037 intron erm - chr2L_7_1955001 chr2L_1955001 RAL-738 44 chr2L 2082940 2082967 chr2L 2090773 2090788 8 7826 6.5 3.0 4.8 1.4 7848 chr2L 2082940 intron dpr3 - chr2L 2086864 intron dpr3 - chr2L 2090788 intron dpr3 - chr2L_8_2085001 chr2L_2085001 RAL-738 45 chr2L 2082969 2082971 chr2L 2090772 2090781 4 7810 6.0 3.0 4.5 0.7 7812 chr2L 2082969 intron dpr3 - chr2L 2086875 intron dpr3 - chr2L 2090781 intron dpr3 - chr2L_4_2085001 chr2L_2085001 RAL-738 46 chr2L 2100381 2100408 chr2L 2109525 2109550 roo 14 9147 8.0 4.5 6.2 1.9 9169 chr2L 2100381 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109550 intron dpr3 - chr2L_14_2100001 chr2L_2100001 RAL-738 47 chr2L 2112118 2112143 chr2L 2119773 2119795 opus 5 7653 1.5 3.5 2.5 1.4 7677 chr2L 2112118 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119795 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-738 48 chr2L 2125512 2125543 chr2L 2125856 2125885 14 347 11.0 52.5 31.8 0.4 373 chr2L 2125512 intergenic not near genes chr2L 2125698 intergenic not near genes chr2L 2125885 intergenic not near genes chr2L_14_2125001 chr2L_2125001 RAL-738 49 chr2L 2177396 2177411 chr2L 2177461 2177491 13 71 5.5 9.5 7.5 1.5 95 chr2L 2177396 intron aop - chr2L 2177444 intron aop - chr2L 2177491 intron aop - chr2L_13_2175001 chr2L_2175001 RAL-738 50 chr2L 2260802 2260836 chr2L 2260888 2260922 16 83 3.0 1.5 2.2 5.0 120 chr2L 2260802 intergenic not near genes chr2L 2260862 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_16_2260001 chr2L_2260001 RAL-738 51 chr2L 2299332 2299363 chr2L 2299410 2299441 10 76 2.5 4.5 3.5 2.2 109 chr2L 2299332 intergenic not near genes chr2L 2299386 intergenic not near genes chr2L 2299441 intergenic not near genes chr2L_10_2295001 chr2L_2295001 RAL-738 52 chr2L 2311079 2311089 chr2L 2311169 2311185 8 95 0.0 0.0 0.0 8.0 106 chr2L 2311079 intron CG9967 - chr2L 2311132 intron CG9967 - chr2L 2311185 intron CG9967 - chr2L_8_2310001 chr2L_2310001 RAL-738 53 chr2L 2372367 2372403 chr2L 2372453 2372483 6 77 0.0 4.0 2.0 2.0 116 chr2L 2372367 intergenic CG3609 - chr2L 2372425 intergenic CG3609 - chr2L 2372483 3` UTR CG3609 - chr2L_6_2370001 chr2L_2370001 RAL-738 54 chr2L 2475673 2475701 chr2L 2475758 2475773 8 83 0.0 6.0 3.0 2.0 100 chr2L 2475673 intergenic not near genes chr2L 2475723 intergenic not near genes chr2L 2475773 intergenic not near genes chr2L_8_2475001 chr2L_2475001 RAL-738 55 chr2L 2501914 2501931 chr2L 2501997 2502014 5 83 2.5 1.0 1.8 1.8 100 chr2L 2501914 intergenic not near genes chr2L 2501964 intergenic not near genes chr2L 2502014 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-738 56 chr2L 2537482 2537516 chr2L 2537570 2537604 10 84 4.0 4.0 4.0 2.0 122 chr2L 2537482 intergenic not near genes chr2L 2537543 intergenic not near genes chr2L 2537604 intergenic not near genes chr2L_10_2535001 chr2L_2535001 RAL-738 57 chr2L 2618038 2618069 chr2L 2618117 2618146 9 75 4.0 2.5 3.2 2.1 108 chr2L 2618038 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618146 intergenic not near genes chr2L_9_2615001 chr2L_2615001 RAL-738 58 chr2L 2661217 2661219 chr2L 2663042 2663056 I-element 4 1830 4.5 2.5 3.5 0.9 1839 chr2L 2661217 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663056 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-738 59 chr2L 2661220 2661222 chr2L 2663041 2663043 I-element 4 1829 4.0 2.5 3.2 1.0 1823 chr2L 2661220 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663043 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-738 60 chr2L 2661223 2661233 chr2L 2663036 2663071 I-element 6 1824 2.0 2.0 2.0 2.0 1848 chr2L 2661223 intergenic not near genes chr2L 2662147 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-738 61 chr2L 2667631 2667655 chr2L 2667704 2667716 17 73 7.0 4.5 5.8 2.5 85 chr2L 2667631 intergenic not near genes chr2L 2667674 intergenic not near genes chr2L 2667716 intergenic not near genes chr2L_17_2665001 chr2L_2665001 RAL-738 62 chr2L 2698866 2698882 chr2L 2698953 2698964 4 86 1.5 4.5 3.0 1.0 98 chr2L 2698866 intron CG31690 + chr2L 2698915 intron CG31690 + chr2L 2698964 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-738 63 chr2L 2698884 2698893 chr2L 2698952 2698980 6 83 1.5 3.5 2.5 1.7 96 chr2L 2698884 intron CG31690 + chr2L 2698932 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-738 64 chr2L 2713518 2713550 chr2L 2713609 2713623 26 92 6.5 6.5 6.5 3.5 105 chr2L 2713518 intron CG31690 + chr2L 2713570 intron CG31690 + chr2L 2713623 intron CG31690 + chr2L_26_2710001 chr2L_2710001 RAL-738 65 chr2L 2772612 2772622 chr2L 2779194 2779204 297 4 6581 4.0 3.5 3.8 0.8 6592 chr2L 2772612 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779204 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-738 66 chr2L 2800612 2800620 chr2L 2800695 2800703 6 82 3.0 0.5 1.8 2.1 91 chr2L 2800612 intergenic not near genes chr2L 2800658 intergenic not near genes chr2L 2800703 intergenic not near genes chr2L_6_2800001 chr2L_2800001 RAL-738 67 chr2L 2826537 2826571 chr2L 2826629 2826655 10 85 0.5 3.0 1.8 3.6 118 chr2L 2826537 intron Duox - chr2L 2826596 intron Duox - chr2L 2826655 intron Duox - chr2L_10_2825001 chr2L_2825001 RAL-738 68 chr2L 2873439 2873460 chr2L 2873517 2873524 5 71 0.0 5.0 2.5 1.4 85 chr2L 2873439 intron CG31694 - chr2L 2873482 intron CG31694 - chr2L 2873524 intron CG31694 - chr2L_5_2870001 chr2L_2870001 RAL-738 69 chr2L 2895687 2895716 chr2L 2895773 2895802 9 84 6.0 4.5 5.2 1.5 115 chr2L 2895687 intron lilli + chr2L 2895744 intron lilli + chr2L 2895802 intron lilli + chr2L_9_2895001 chr2L_2895001 RAL-738 70 chr2L 3073029 3073064 chr2L 3078232 3078267 copia 19 5199 5.0 9.5 7.2 2.3 5238 chr2L 3073029 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_19_3075001 chr2L_3075001 RAL-738 71 chr2L 3108870 3108887 chr2L 3108947 3108964 15 75 3.5 0.5 2.0 5.0 94 chr2L 3108870 intron toc - chr2L 3108917 intron toc - chr2L 3108964 intron toc - chr2L_15_3105001 chr2L_3105001 RAL-738 72 chr2L 3108888 3108898 chr2L 3108944 3108975 7 65 2.0 0.5 1.2 3.2 87 chr2L 3108888 intron toc - chr2L 3108932 intron toc - chr2L 3108975 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-738 73 chr2L 3192207 3192242 chr2L 3192318 3192353 18 108 3.0 3.0 3.0 4.5 146 chr2L 3192207 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192353 intron CG34393 - chr2L_18_3190001 chr2L_3190001 RAL-738 74 chr2L 3251494 3251527 chr2L 3259059 3259092 springer 12 7563 2.5 5.0 3.8 2.5 7598 chr2L 3251494 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_12_3255001 chr2L_3255001 RAL-738 75 chr2L 3379753 3379760 chr2L 3379862 3379869 5 109 9.5 3.0 6.2 0.7 116 chr2L 3379753 intergenic not near genes chr2L 3379811 intergenic not near genes chr2L 3379869 intergenic not near genes chr2L_5_3375001 chr2L_3375001 RAL-738 76 chr2L 3388603 3388621 chr2L 3388844 3388862 pogo 5 241 2.5 4.5 3.5 1.1 259 chr2L 3388603 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388862 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 RAL-738 77 chr2L 3393545 3393573 chr2L 3393656 3393684 13 107 7.0 3.5 5.2 2.1 139 chr2L 3393545 intergenic not near genes chr2L 3393614 intergenic not near genes chr2L 3393684 intergenic not near genes chr2L_13_3390001 chr2L_3390001 RAL-738 78 chr2L 3401863 3401894 chr2L 3401955 3401986 9 91 3.5 5.0 4.2 1.7 123 chr2L 3401863 intergenic not near genes chr2L 3401924 intergenic not near genes chr2L 3401986 intergenic not near genes chr2L_9_3400001 chr2L_3400001 RAL-738 79 chr2L 3443035 3443053 chr2L 3443117 3443130 9 81 8.0 3.5 5.8 1.3 95 chr2L 3443035 intergenic not near genes chr2L 3443082 intergenic not near genes chr2L 3443130 intergenic not near genes chr2L_9_3440001 chr2L_3440001 RAL-738 80 chr2L 3508353 3508376 chr2L 3508431 3508454 5 78 0.0 8.0 4.0 1.0 101 chr2L 3508353 intergenic tim -,CR45299 + chr2L 3508404 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-738 81 chr2L 3547393 3547431 chr2L 3547499 3547515 22 101 4.5 4.0 4.2 4.2 122 chr2L 3547393 3` UTR drm + chr2L 3547454 3` UTR drm + chr2L 3547515 3` UTR drm + chr2L_22_3545001 chr2L_3545001 RAL-738 82 chr2L 3582878 3582910 chr2L 3582955 3582987 20 74 3.0 4.0 3.5 4.4 109 chr2L 3582878 intergenic not near genes chr2L 3582932 intergenic not near genes chr2L 3582987 intergenic not near genes chr2L_20_3580001 chr2L_3580001 RAL-738 83 chr2L 3603627 3603649 chr2L 3603723 3603737 8 90 5.5 6.5 6.0 1.1 110 chr2L 3603627 intergenic not near genes chr2L 3603682 intergenic not near genes chr2L 3603737 intergenic odd - chr2L_8_3600001 chr2L_3600001 RAL-738 84 chr2L 3634106 3634139 chr2L 3634188 3634221 20 81 4.5 9.0 6.8 2.6 115 chr2L 3634106 intron for - chr2L 3634164 intron for - chr2L 3634221 intron for - chr2L_20_3630001 chr2L_3630001 RAL-738 85 chr2L 3667963 3667978 chr2L 3668128 3668144 6 166 1.0 4.5 2.8 1.6 181 chr2L 3667963 intron CG34340 + chr2L 3668054 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668144 intron,exon CG34340 +,Sfp24Ba - chr2L_6_3665001 chr2L_3665001 RAL-738 86 chr2L 3831847 3831862 chr2L 3831928 3831943 5 81 6.0 5.0 5.5 0.8 96 chr2L 3831847 intergenic not near genes chr2L 3831895 intergenic not near genes chr2L 3831943 intergenic not near genes chr2L_5_3830001 chr2L_3830001 RAL-738 87 chr2L 3884793 3884810 chr2L 3884870 3884887 7 76 4.0 2.0 3.0 1.8 94 chr2L 3884793 intron capu - chr2L 3884840 intron capu - chr2L 3884887 intron capu - chr2L_7_3880001 chr2L_3880001 RAL-738 88 chr2L 3906052 3906069 chr2L 3906182 3906202 7 136 5.5 5.0 5.2 1.1 150 chr2L 3906052 intron fred - chr2L 3906127 intron fred - chr2L 3906202 intron fred - chr2L_7_3905001 chr2L_3905001 RAL-738 89 chr2L 3943800 3943827 chr2L 3943891 3943918 9 91 3.0 4.5 3.8 1.9 118 chr2L 3943800 intron fred - chr2L 3943859 intron fred - chr2L 3943918 intron fred - chr2L_9_3940001 chr2L_3940001 RAL-738 90 chr2L 4001670 4001685 chr2L 4001768 4001783 7 98 2.0 6.0 4.0 1.4 113 chr2L 4001670 intergenic CR45344 + chr2L 4001726 intergenic CR45344 + chr2L 4001783 intergenic CR45344 + chr2L_7_4000001 chr2L_4000001 RAL-738 91 chr2L 4066047 4066057 chr2L 4068860 4068882 Juan 6 2823 3.5 4.0 3.8 1.2 2835 chr2L 4066047 intron ed + chr2L 4067464 intron ed + chr2L 4068882 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-738 92 chr2L 4150639 4150657 chr2L 4150704 4150733 14 68 1.5 4.5 3.0 3.5 94 chr2L 4150639 exon CG2955 + chr2L 4150686 exon CG2955 + chr2L 4150733 exon CG2955 + chr2L_14_4150001 chr2L_4150001 RAL-738 93 chr2L 4155611 4155635 chr2L 4155852 4155876 11 238 0.5 3.0 1.8 3.9 265 chr2L 4155611 intergenic not near genes chr2L 4155744 intergenic not near genes chr2L 4155876 intergenic not near genes chr2L_11_4155001 chr2L_4155001 RAL-738 94 chr2L 4166375 4166411 chr2L 4166458 4166488 17 81 2.0 4.5 3.2 4.0 113 chr2L 4166375 intergenic Or24a - chr2L 4166432 intergenic Or24a - chr2L 4166488 intergenic Or24a - chr2L_17_4165001 chr2L_4165001 RAL-738 95 chr2L 4184494 4184508 chr2L 4184813 4184827 6 319 0.0 9.5 4.8 1.0 333 chr2L 4184494 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184827 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-738 96 chr2L 4195076 4195088 chr2L 4195156 4195159 4 78 9.0 0.0 4.5 0.7 83 chr2L 4195076 exon CG3714 - chr2L 4195118 intron CG3714 - chr2L 4195159 intron CG3714 - chr2L_4_4195001 chr2L_4195001 RAL-738 97 chr2L 4256570 4256574 chr2L 4256650 4256654 5 80 1.0 3.0 2.0 1.7 84 chr2L 4256570 intergenic CR45295 -,CR45296 -,CR45294 - chr2L 4256612 intergenic CR45295 -,CR45296 - chr2L 4256654 intergenic CR45295 -,CR45296 - chr2L_5_4255001 chr2L_4255001 RAL-738 98 chr2L 4345491 4345506 chr2L 4345569 4345582 6 78 6.5 1.5 4.0 1.2 91 chr2L 4345491 3` UTR Atet + chr2L 4345536 3` UTR Atet + chr2L 4345582 3` UTR Atet + chr2L_6_4345001 chr2L_4345001 RAL-738 99 chr2L 4536778 4536779 chr2L 4546220 4546231 4 9444 114.0 6.0 60.0 0.1 9453 chr2L 4536778 exon dp - chr2L 4541504 exon dp - chr2L 4546231 exon dp - chr2L_4_4540001 chr2L_4540001 RAL-738 100 chr2L 4601703 4601737 chr2L 4609144 4609178 mdg1 23 7435 8.0 9.0 8.5 2.4 7475 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_23_4605001 chr2L_4605001 RAL-738 101 chr2L 4680885 4680916 chr2L 4681009 4681025 14 118 4.5 7.0 5.8 2.1 140 chr2L 4680885 intergenic not near genes chr2L 4680955 intergenic not near genes chr2L 4681025 intergenic not near genes chr2L_14_4680001 chr2L_4680001 RAL-738 102 chr2L 4730843 4730874 chr2L 4731188 4731219 9 340 3.5 4.5 4.0 1.8 376 chr2L 4730843 intergenic not near genes chr2L 4731031 intergenic not near genes chr2L 4731219 intergenic not near genes chr2L_9_4730001 chr2L_4730001 RAL-738 103 chr2L 4742174 4742185 chr2L 4742266 4742268 5 90 13.5 6.0 9.8 0.5 94 chr2L 4742174 intron CG15630 - chr2L 4742221 intron CG15630 - chr2L 4742268 intron CG15630 - chr2L_5_4740001 chr2L_4740001 RAL-738 104 chr2L 4742189 4742204 chr2L 4742265 4742296 5 84 8.5 6.0 7.2 0.6 107 chr2L 4742189 intron CG15630 - chr2L 4742242 intron CG15630 - chr2L 4742296 intron CG15630 - chr2L_5_4740001 chr2L_4740001 RAL-738 105 chr2L 4779810 4779834 chr2L 4779886 4779894 8 70 3.5 6.5 5.0 1.3 84 chr2L 4779810 intron CG15630 - chr2L 4779852 intron CG15630 - chr2L 4779894 intron CG15630 - chr2L_8_4775001 chr2L_4775001 RAL-738 106 chr2L 4792728 4792741 chr2L 4792836 4792849 5 107 10.5 9.0 9.8 0.5 121 chr2L 4792728 intron CG15630 - chr2L 4792788 intron CG15630 - chr2L 4792849 intron CG15630 - chr2L_5_4790001 chr2L_4790001 RAL-738 107 chr2L 4792742 4792759 chr2L 4792834 4792862 11 98 4.5 8.5 6.5 1.5 120 chr2L 4792742 intron CG15630 - chr2L 4792802 intron CG15630 - chr2L 4792862 intron CG15630 - chr2L_11_4790001 chr2L_4790001 RAL-738 108 chr2L 4862285 4862317 chr2L 4862360 4862362 13 69 7.5 5.0 6.2 1.8 77 chr2L 4862285 intron pog + chr2L 4862324 intron pog + chr2L 4862362 intron pog + chr2L_13_4860001 chr2L_4860001 RAL-738 109 chr2L 4867730 4867739 chr2L 4867887 4867892 6 160 7.0 3.5 5.2 1.0 162 chr2L 4867730 intron pog + chr2L 4867811 intron pog + chr2L 4867892 intron pog + chr2L_6_4865001 chr2L_4865001 RAL-738 110 chr2L 4918169 4918180 chr2L 4923242 4923253 jockey 5 5073 5.5 0.0 2.8 1.3 5084 chr2L 4918169 intron hoe1 - chr2L 4920711 intron hoe1 - chr2L 4923253 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-738 111 chr2L 4923238 4923249 chr2L 4923329 4923340 4 91 0.0 0.0 0.0 4.0 102 chr2L 4923238 intron hoe1 - chr2L 4923289 intron hoe1 - chr2L 4923340 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-738 112 chr2L 5092414 5092438 chr2L 5092501 5092525 9 85 6.5 3.5 5.0 1.5 111 chr2L 5092414 intron pgant5 - chr2L 5092470 intron pgant5 - chr2L 5092525 intron pgant5 - chr2L_9_5090001 chr2L_5090001 RAL-738 113 chr2L 5117301 5117322 chr2L 5117383 5117404 8 82 2.0 6.0 4.0 1.6 103 chr2L 5117301 intron Msp300 + chr2L 5117352 intron Msp300 + chr2L 5117404 intron Msp300 + chr2L_8_5115001 chr2L_5115001 RAL-738 114 chr2L 5149769 5149790 chr2L 5150020 5150034 5 250 4.0 2.5 3.2 1.2 265 chr2L 5149769 intron Msp300 + chr2L 5149902 intron Msp300 + chr2L 5150034 intron Msp300 + chr2L_5_5145001 chr2L_5145001 RAL-738 115 chr2L 5296214 5296245 chr2L 5296293 5296324 11 77 7.0 6.5 6.8 1.4 110 chr2L 5296214 intron vri + chr2L 5296269 intron vri + chr2L 5296324 intron vri + chr2L_11_5295001 chr2L_5295001 RAL-738 116 chr2L 5326967 5326981 chr2L 5327071 5327085 4 104 2.0 3.5 2.8 1.1 118 chr2L 5326967 intergenic CR44985 +,cype +,Ncoa6 - chr2L 5327026 intergenic CR44985 +,cype +,Ncoa6 - chr2L 5327085 intergenic cype +,CR44985 +,Ncoa6 - chr2L_4_5325001 chr2L_5325001 RAL-738 117 chr2L 5342772 5342796 chr2L 5345152 5345176 Doc 9 2378 4.0 4.0 4.0 1.8 2404 chr2L 5342772 intergenic not near genes chr2L 5343974 intergenic not near genes chr2L 5345176 intergenic not near genes chr2L_9_5340001 chr2L_5340001 RAL-738 118 chr2L 5378429 5378451 chr2L 5378508 5378530 8 79 5.0 4.5 4.8 1.4 101 chr2L 5378429 intergenic not near genes chr2L 5378480 intergenic not near genes chr2L 5378530 intergenic not near genes chr2L_8_5375001 chr2L_5375001 RAL-738 119 chr2L 5380238 5380252 chr2L 5380325 5380329 6 87 9.0 8.5 8.8 0.6 91 chr2L 5380238 3` UTR CR42850 - chr2L 5380284 3` UTR CR42850 - chr2L 5380329 3` UTR CR42850 - chr2L_6_5380001 chr2L_5380001 RAL-738 120 chr2L 5448011 5448023 chr2L 5448095 5448107 5 84 0.0 4.5 2.2 1.6 96 chr2L 5448011 intergenic not near genes chr2L 5448059 intergenic not near genes chr2L 5448107 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-738 121 chr2L 5449725 5449732 chr2L 5449812 5449813 4 86 0.0 0.0 0.0 4.0 88 chr2L 5449725 intergenic not near genes chr2L 5449769 intergenic not near genes chr2L 5449813 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-738 122 chr2L 5488018 5488035 chr2L 5488097 5488115 5 79 7.5 0.5 4.0 1.0 97 chr2L 5488018 intergenic not near genes chr2L 5488066 intergenic not near genes chr2L 5488115 intergenic not near genes chr2L_5_5485001 chr2L_5485001 RAL-738 123 chr2L 5500060 5500076 chr2L 5500146 5500162 6 86 7.0 5.5 6.2 0.8 102 chr2L 5500060 intergenic not near genes chr2L 5500111 intergenic not near genes chr2L 5500162 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-738 124 chr2L 5508531 5508562 chr2L 5508607 5508638 9 76 4.5 1.5 3.0 2.2 107 chr2L 5508531 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508638 intergenic not near genes chr2L_9_5505001 chr2L_5505001 RAL-738 125 chr2L 5573677 5573684 chr2L 5573753 5573760 4 76 9.5 6.0 7.8 0.5 83 chr2L 5573677 intergenic not near genes chr2L 5573718 intergenic not near genes chr2L 5573760 intergenic not near genes chr2L_4_5570001 chr2L_5570001 RAL-738 126 chr2L 5573685 5573709 chr2L 5573752 5573783 10 74 5.5 6.0 5.8 1.5 98 chr2L 5573685 intergenic not near genes chr2L 5573734 intergenic not near genes chr2L 5573783 intergenic not near genes chr2L_10_5570001 chr2L_5570001 RAL-738 127 chr2L 5668606 5668613 chr2L 5668684 5668691 5 78 7.5 4.5 6.0 0.7 85 chr2L 5668606 intron Hsp60C + chr2L 5668648 intron Hsp60C + chr2L 5668691 intron Hsp60C + chr2L_5_5665001 chr2L_5665001 RAL-738 128 chr2L 5676891 5676923 chr2L 5676987 5677019 14 95 0.0 2.5 1.2 6.4 128 chr2L 5676891 intergenic not near genes chr2L 5676955 intergenic not near genes chr2L 5677019 intergenic not near genes chr2L_14_5675001 chr2L_5675001 RAL-738 129 chr2L 5682285 5682313 chr2L 5682369 5682372 8 76 5.0 1.5 3.2 1.9 87 chr2L 5682285 intergenic not near genes chr2L 5682328 intergenic not near genes chr2L 5682372 intergenic not near genes chr2L_8_5680001 chr2L_5680001 RAL-738 130 chr2L 5695860 5695890 chr2L 5695952 5695981 15 90 4.0 4.5 4.2 2.9 121 chr2L 5695860 intergenic not near genes chr2L 5695920 intergenic not near genes chr2L 5695981 intergenic not near genes chr2L_15_5695001 chr2L_5695001 RAL-738 131 chr2L 5762378 5762410 chr2L 5762501 5762533 13 122 4.0 1.5 2.8 3.4 155 chr2L 5762378 3` UTR CG11030 + chr2L 5762456 intergenic CG11030 +,obst-E - chr2L 5762533 intergenic obst-E -,CG11030 + chr2L_13_5760001 chr2L_5760001 RAL-738 132 chr2L 5780917 5780940 chr2L 5781013 5781045 12 103 4.5 5.5 5.0 2.0 128 chr2L 5780917 intron CG9171 - chr2L 5780981 intron CG9171 - chr2L 5781045 intron CG9171 - chr2L_12_5780001 chr2L_5780001 RAL-738 133 chr2L 5827715 5827727 chr2L 5836723 5836735 roo 5 9008 8.5 4.0 6.2 0.7 9020 chr2L 5827715 intron TrissinR + chr2L 5832225 intron TrissinR + chr2L 5836735 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-738 134 chr2L 5827734 5827740 chr2L 5836722 5836738 roo 7 8997 6.5 3.0 4.8 1.2 9004 chr2L 5827734 intron TrissinR + chr2L 5832236 intron TrissinR + chr2L 5836738 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-738 135 chr2L 5839105 5839125 chr2L 5839185 5839200 8 78 4.5 7.5 6.0 1.1 95 chr2L 5839105 intron TrissinR + chr2L 5839152 intron TrissinR + chr2L 5839200 intron TrissinR + chr2L_8_5835001 chr2L_5835001 RAL-738 136 chr2L 5897592 5897628 chr2L 5897675 5897686 25 79 6.5 6.0 6.2 3.5 94 chr2L 5897592 intergenic not near genes chr2L 5897639 intergenic not near genes chr2L 5897686 intergenic not near genes chr2L_25_5895001 chr2L_5895001 RAL-738 137 chr2L 5926266 5926454 chr2L 5926346 5926542 5 85 0.0 0.0 0.0 5.0 276 chr2L 5926266 intron dsf + chr2L 5926404 intron dsf + chr2L 5926542 intron dsf + chr2L_5_5925001 chr2L_5925001 RAL-738 138 chr2L 5989032 5989065 chr2L 5989108 5989141 17 75 2.5 2.0 2.2 5.3 109 chr2L 5989032 intergenic ifc +,lid - chr2L 5989086 intergenic ifc +,lid - chr2L 5989141 intergenic lid -,ifc + chr2L_17_5985001 chr2L_5985001 RAL-738 139 chr2L 5993328 5993359 chr2L 5993419 5993450 17 91 5.5 5.5 5.5 2.6 122 chr2L 5993328 exon lid - chr2L 5993389 intron lid - chr2L 5993450 intron lid - chr2L_17_5990001 chr2L_5990001 RAL-738 140 chr2L 6120548 6120583 chr2L 6120635 6120673 16 86 3.0 3.5 3.2 3.8 125 chr2L 6120548 intron stai + chr2L 6120610 intron stai + chr2L 6120673 intron stai + chr2L_16_6120001 chr2L_6120001 RAL-738 141 chr2L 6138737 6138750 chr2L 6138853 6138865 6 115 3.5 0.0 1.8 2.1 128 chr2L 6138737 intergenic CR44824 - chr2L 6138801 intergenic CR44824 - chr2L 6138865 intergenic CR44824 - chr2L_6_6135001 chr2L_6135001 RAL-738 142 chr2L 6151641 6151661 chr2L 6151719 6151726 6 75 7.0 4.0 5.5 0.9 85 chr2L 6151641 intergenic Muc26B + chr2L 6151684 intergenic Muc26B + chr2L 6151726 intergenic Muc26B + chr2L_6_6150001 chr2L_6150001 RAL-738 143 chr2L 6185456 6185471 chr2L 6185517 6185549 9 70 5.5 5.5 5.5 1.4 93 chr2L 6185456 intron CG34380 + chr2L 6185502 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_9_6185001 chr2L_6185001 RAL-738 144 chr2L 6283942 6283977 chr2L 6284053 6284088 4 110 0.0 5.5 2.8 1.1 146 chr2L 6283942 intron Ddr + chr2L 6284015 intron Ddr + chr2L 6284088 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-738 145 chr2L 6290234 6290256 chr2L 6290315 6290324 6 82 4.0 3.5 3.8 1.2 90 chr2L 6290234 intron Ddr + chr2L 6290279 intron Ddr + chr2L 6290324 intron Ddr + chr2L_6_6290001 chr2L_6290001 RAL-738 146 chr2L 6308311 6308345 chr2L 6308394 6308398 12 79 3.5 4.0 3.8 2.5 87 chr2L 6308311 intron Ddr + chr2L 6308354 intron Ddr + chr2L 6308398 intron,3` UTR Ddr +,CG43922 - chr2L_12_6305001 chr2L_6305001 RAL-738 147 chr2L 6363151 6363183 chr2L 6366071 6366105 Burdock 8 2921 2.0 3.5 2.8 2.1 2954 chr2L 6363151 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366105 intergenic not near genes chr2L_8_6360001 chr2L_6360001 RAL-738 148 chr2L 6426854 6426887 chr2L 6445114 6445147 roo 9 18256 6.0 7.0 6.5 1.2 18293 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-738 149 chr2L 6463560 6463569 chr2L 6463647 6463650 5 87 6.0 2.5 4.2 1.0 90 chr2L 6463560 exon CG16947 - chr2L 6463605 exon CG16947 - chr2L 6463650 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-738 150 chr2L 6508907 6508930 chr2L 6509003 6509008 8 93 5.5 2.5 4.0 1.6 101 chr2L 6508907 intron CG31637 + chr2L 6508958 intron CG31637 + chr2L 6509008 intron CG31637 + chr2L_8_6505001 chr2L_6505001 RAL-738 151 chr2L 6537142 6537165 chr2L 6537220 6537243 6 78 3.0 1.0 2.0 2.0 101 chr2L 6537142 intron eya - chr2L 6537192 intron eya - chr2L 6537243 intron eya - chr2L_6_6535001 chr2L_6535001 RAL-738 152 chr2L 6930682 6930684 chr2L 6930764 6930766 4 82 9.5 2.0 5.8 0.6 84 chr2L 6930682 3` UTR Hrb27C + chr2L 6930724 3` UTR Hrb27C + chr2L 6930766 3` UTR Hrb27C + chr2L_4_6930001 chr2L_6930001 RAL-738 153 chr2L 7050329 7050350 chr2L 7050404 7050426 5 73 5.0 4.0 4.5 0.9 97 chr2L 7050329 intron milt + chr2L 7050378 intron milt + chr2L 7050426 intron milt + chr2L_5_7050001 chr2L_7050001 RAL-738 154 chr2L 7111754 7111780 chr2L 7111840 7111866 5 86 3.5 0.0 1.8 1.8 112 chr2L 7111754 intron Pvf3 - chr2L 7111810 intron Pvf3 - chr2L 7111866 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-738 155 chr2L 7125789 7125807 chr2L 7125905 7125923 5 115 3.5 2.5 3.0 1.2 134 chr2L 7125789 intron Pvf3 - chr2L 7125856 intron Pvf3 - chr2L 7125923 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-738 156 chr2L 7126859 7126877 chr2L 7126938 7126956 8 79 2.5 0.0 1.2 3.6 97 chr2L 7126859 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126956 intron Pvf3 - chr2L_8_7125001 chr2L_7125001 RAL-738 157 chr2L 7268678 7268710 chr2L 7268778 7268790 12 96 1.0 2.5 1.8 4.3 112 chr2L 7268678 intron Wnt4 - chr2L 7268734 intron Wnt4 - chr2L 7268790 intron Wnt4 - chr2L_12_7265001 chr2L_7265001 RAL-738 158 chr2L 7335202 7335229 chr2L 7335299 7335326 7 95 2.5 1.5 2.0 2.3 124 chr2L 7335202 intron Wnt6 + chr2L 7335264 intron Wnt6 + chr2L 7335326 intron Wnt6 + chr2L_7_7335001 chr2L_7335001 RAL-738 159 chr2L 7343326 7343356 chr2L 7350441 7350471 roo 8 7104 5.5 3.5 4.5 1.5 7145 chr2L 7343326 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-738 160 chr2L 7377889 7377901 chr2L 7377985 7377998 6 97 0.5 5.0 2.8 1.6 109 chr2L 7377889 intron ninaC + chr2L 7377944 intron ninaC + chr2L 7377998 intron ninaC + chr2L_6_7375001 chr2L_7375001 RAL-738 161 chr2L 7399305 7399335 chr2L 7399678 7399689 8 365 0.5 8.5 4.5 1.5 384 chr2L 7399305 intergenic not near genes chr2L 7399497 intergenic not near genes chr2L 7399689 intergenic not near genes chr2L_8_7395001 chr2L_7395001 RAL-738 162 chr2L 7502736 7502760 chr2L 7502812 7502836 10 74 13.0 10.5 11.8 0.8 100 chr2L 7502736 intron RapGAP1 - chr2L 7502786 intron RapGAP1 - chr2L 7502836 intron RapGAP1 - chr2L_10_7500001 chr2L_7500001 RAL-738 163 chr2L 7609530 7609751 chr2L 7609625 7609828 19 82 2.0 0.0 1.0 9.5 298 chr2L 7609530 intron CG6739 + chr2L 7609679 intron CG6739 + chr2L 7609828 intron CG6739 + chr2L_19_7605001 chr2L_7605001 RAL-738 164 chr2L 7638877 7638890 chr2L 7638956 7638980 4 84 5.5 2.0 3.8 0.8 103 chr2L 7638877 intergenic not near genes chr2L 7638928 intergenic not near genes chr2L 7638980 intergenic not near genes chr2L_4_7635001 chr2L_7635001 RAL-738 165 chr2L 7667528 7667547 chr2L 7668030 7668049 8 502 9.0 9.5 9.2 0.8 521 chr2L 7667528 intron,intron Slob -,Myo28B1 + chr2L 7667788 intron,intron Slob -,Myo28B1 + chr2L 7668049 intron,intron Slob -,Myo28B1 + chr2L_8_7665001 chr2L_7665001 RAL-738 166 chr2L 7679839 7679873 chr2L 7679927 7679961 11 87 3.5 2.0 2.8 2.9 122 chr2L 7679839 intron Myo28B1 + chr2L 7679900 intron Myo28B1 + chr2L 7679961 intron Myo28B1 + chr2L_11_7675001 chr2L_7675001 RAL-738 167 chr2L 7742553 7742570 chr2L 7742614 7742630 10 65 1.5 4.5 3.0 2.5 77 chr2L 7742553 intergenic not near genes chr2L 7742592 intergenic not near genes chr2L 7742630 intergenic not near genes chr2L_10_7740001 chr2L_7740001 RAL-738 168 chr2L 7905622 7905638 chr2L 7905712 7905729 7 90 7.0 4.5 5.8 1.0 107 chr2L 7905622 intron Snoo - chr2L 7905676 intron Snoo - chr2L 7905729 intron Snoo - chr2L_7_7905001 chr2L_7905001 RAL-738 169 chr2L 7922743 7922775 chr2L 7922824 7922856 19 80 3.0 6.0 4.5 3.5 113 chr2L 7922743 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_19_7920001 chr2L_7920001 RAL-738 170 chr2L 7959040 7959072 chr2L 7960451 7960464 pogo 12 1407 5.5 1.0 3.2 2.9 1424 chr2L 7959040 intron Snoo - chr2L 7959752 intron Snoo - chr2L 7960464 intron Snoo - chr2L_12_7955001 chr2L_7955001 RAL-738 171 chr2L 7977089 7977108 chr2L 7984065 7984084 297 7 6975 3.0 2.0 2.5 2.0 6995 chr2L 7977089 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-738 172 chr2L 8013617 8013630 chr2L 8018821 8018834 copia 8 5204 6.5 0.0 3.2 1.9 5217 chr2L 8013617 intron Tg + chr2L 8016226 intron Tg + chr2L 8018834 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-738 173 chr2L 8044101 8044131 chr2L 8044180 8044210 14 79 4.5 5.0 4.8 2.4 109 chr2L 8044101 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044210 intron CG7466 + chr2L_14_8040001 chr2L_8040001 RAL-738 174 chr2L 8167147 8167166 chr2L 8167238 8167257 7 91 4.0 4.0 4.0 1.4 110 chr2L 8167147 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167257 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-738 175 chr2L 8244740 8244749 chr2L 8244862 8244871 6 122 1.5 7.5 4.5 1.1 131 chr2L 8244740 intron CG8086 - chr2L 8244806 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-738 176 chr2L 8271619 8271631 chr2L 8271695 8271707 4 76 0.0 1.5 0.8 2.2 88 chr2L 8271619 intron Btk29A - chr2L 8271663 intron Btk29A - chr2L 8271707 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-738 177 chr2L 8286304 8286312 chr2L 8286391 8286395 6 86 4.5 10.5 7.5 0.7 91 chr2L 8286304 intron Btk29A - chr2L 8286350 intron Btk29A - chr2L 8286395 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-738 178 chr2L 8336935 8336965 chr2L 8337014 8337042 9 74 0.0 2.5 1.2 4.1 107 chr2L 8336935 intergenic not near genes chr2L 8336988 intergenic not near genes chr2L 8337042 intergenic not near genes chr2L_9_8335001 chr2L_8335001 RAL-738 179 chr2L 8452425 8452452 chr2L 8461596 8461623 roo 14 9169 4.0 7.0 5.5 2.2 9198 chr2L 8452425 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461623 intron fu12 - chr2L_14_8455001 chr2L_8455001 RAL-738 180 chr2L 8510136 8510158 chr2L 8510225 8510233 4 84 5.0 2.0 3.5 0.9 97 chr2L 8510136 exon CG13096 - chr2L 8510184 intron CG13096 - chr2L 8510233 intron CG13096 - chr2L_4_8510001 chr2L_8510001 RAL-738 181 chr2L 8546075 8546101 chr2L 8546163 8546189 8 88 4.0 3.5 3.8 1.7 114 chr2L 8546075 intron Sema-1a + chr2L 8546132 intron Sema-1a + chr2L 8546189 intron Sema-1a + chr2L_8_8545001 chr2L_8545001 RAL-738 182 chr2L 8612856 8612868 chr2L 8612933 8612944 5 76 7.5 9.5 8.5 0.5 88 chr2L 8612856 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612944 intron Sema-1a + chr2L_5_8610001 chr2L_8610001 RAL-738 183 chr2L 8635262 8635280 chr2L 8635347 8635358 7 84 12.0 9.0 10.5 0.6 96 chr2L 8635262 intron Sema-1a + chr2L 8635310 intron Sema-1a + chr2L 8635358 intron Sema-1a + chr2L_7_8635001 chr2L_8635001 RAL-738 184 chr2L 8719205 8719237 chr2L 8719279 8719313 8 74 4.0 0.0 2.0 2.7 108 chr2L 8719205 intron raw - chr2L 8719259 intron raw - chr2L 8719313 intron raw - chr2L_8_8715001 chr2L_8715001 RAL-738 185 chr2L 8723118 8723147 chr2L 8731493 8731524 Tirant 10 8377 5.0 4.0 4.5 1.8 8406 chr2L 8723118 intron raw - chr2L 8727321 intron raw - chr2L 8731524 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-738 186 chr2L 8786560 8786574 chr2L 8786646 8786661 5 86 1.5 9.0 5.2 0.8 101 chr2L 8786560 intergenic not near genes chr2L 8786610 intergenic not near genes chr2L 8786661 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-738 187 chr2L 8788755 8788785 chr2L 8788846 8788876 7 89 1.5 2.0 1.8 2.5 121 chr2L 8788755 intergenic not near genes chr2L 8788816 intergenic not near genes chr2L 8788876 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-738 188 chr2L 8799802 8799830 chr2L 8799918 8799945 12 113 3.0 7.5 5.2 1.9 143 chr2L 8799802 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799945 intergenic not near genes chr2L_12_8795001 chr2L_8795001 RAL-738 189 chr2L 8818067 8818074 chr2L 8818132 8818140 7 70 3.5 7.5 5.5 1.1 73 chr2L 8818067 intergenic not near genes chr2L 8818104 intergenic not near genes chr2L 8818140 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-738 190 chr2L 8851453 8851479 chr2L 8851737 8851762 11 284 2.5 4.5 3.5 2.4 309 chr2L 8851453 intergenic not near genes chr2L 8851608 intergenic CR45365 - chr2L 8851762 intergenic CR45365 - chr2L_11_8850001 chr2L_8850001 RAL-738 191 chr2L 8956227 8956238 chr2L 8956304 8956315 4 77 2.0 0.0 1.0 2.0 88 chr2L 8956227 intron CG31886 - chr2L 8956271 intron CG31886 - chr2L 8956315 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-738 192 chr2L 8976223 8976248 chr2L 8976315 8976339 7 90 2.5 2.5 2.5 2.0 116 chr2L 8976223 intergenic not near genes chr2L 8976281 intergenic not near genes chr2L 8976339 intergenic not near genes chr2L_7_8975001 chr2L_8975001 RAL-738 193 chr2L 8987987 8988012 chr2L 8988068 8988093 9 81 2.5 2.0 2.2 2.8 106 chr2L 8987987 intron rost - chr2L 8988040 intron rost - chr2L 8988093 intron rost - chr2L_9_8985001 chr2L_8985001 RAL-738 194 chr2L 8997264 8997292 chr2L 8997628 8997656 7 364 37.0 40.5 38.8 0.2 392 chr2L 8997264 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997656 5` UTR CG18661 + chr2L_7_8995001 chr2L_8995001 RAL-738 195 chr2L 9000286 9000312 chr2L 9007791 9007822 roo 16 7508 9.5 8.0 8.8 1.6 7536 chr2L 9000286 intergenic Try29F + chr2L 9004054 intergenic not near genes chr2L 9007822 intergenic not near genes chr2L_16_9000001 chr2L_9000001 RAL-738 196 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133322 19.0 42.5 30.8 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-738 197 chr2L 9195876 9195881 chr2L 9195959 9195964 6 82 3.0 3.0 3.0 1.5 88 chr2L 9195876 intron tai + chr2L 9195920 intron tai + chr2L 9195964 intron tai + chr2L_6_9195001 chr2L_9195001 RAL-738 198 chr2L 9268217 9268235 chr2L 9268281 9268307 8 69 5.5 4.5 5.0 1.3 90 chr2L 9268217 intron Ggamma30A + chr2L 9268262 intron Ggamma30A + chr2L 9268307 intron Ggamma30A + chr2L_8_9265001 chr2L_9265001 RAL-738 199 chr2L 9297378 9297401 chr2L 9297455 9297478 10 74 9.5 11.0 10.2 0.9 100 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-738 200 chr2L 9304356 9304520 chr2L 9304440 9304583 17 77 3.0 6.0 4.5 3.1 227 chr2L 9304356 intergenic CR42844 - chr2L 9304470 3` UTR CR42844 - chr2L 9304583 3` UTR CR42844 - chr2L_17_9300001 chr2L_9300001 RAL-738 201 chr2L 9393516 9393531 chr2L 9396472 9396498 jockey 9 2963 4.0 14.0 9.0 0.9 2982 chr2L 9393516 intron Shawl - chr2L 9395007 intron Shawl - chr2L 9396498 intron Shawl - chr2L_9_9395001 chr2L_9395001 RAL-738 202 chr2L 9415805 9415834 chr2L 9415882 9415900 9 75 1.5 4.0 2.8 2.4 95 chr2L 9415805 intergenic not near genes chr2L 9415852 intergenic not near genes chr2L 9415900 intergenic not near genes chr2L_9_9415001 chr2L_9415001 RAL-738 203 chr2L 9454978 9454997 chr2L 9455080 9455099 11 101 4.5 4.5 4.5 2.0 121 chr2L 9454978 intron numb + chr2L 9455038 intron numb + chr2L 9455099 intron numb + chr2L_11_9455001 chr2L_9455001 RAL-738 204 chr2L 9456933 9456954 chr2L 9457014 9457025 5 72 1.5 8.0 4.8 0.9 92 chr2L 9456933 intron numb + chr2L 9456979 intron numb + chr2L 9457025 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-738 205 chr2L 9464846 9464874 chr2L 9464938 9464966 8 92 3.5 3.0 3.2 1.9 120 chr2L 9464846 intergenic not near genes chr2L 9464906 intergenic not near genes chr2L 9464966 intergenic not near genes chr2L_8_9460001 chr2L_9460001 RAL-738 206 chr2L 9474782 9474806 chr2L 9474876 9474900 8 93 1.5 3.5 2.5 2.3 118 chr2L 9474782 intergenic not near genes chr2L 9474841 intergenic not near genes chr2L 9474900 intergenic not near genes chr2L_8_9470001 chr2L_9470001 RAL-738 207 chr2L 9677789 9677806 chr2L 9678405 9678439 11 625 2.5 3.5 3.0 2.8 650 chr2L 9677789 intergenic not near genes chr2L 9678114 intergenic not near genes chr2L 9678439 intergenic not near genes chr2L_11_9675001 chr2L_9675001 RAL-738 208 chr2L 9733562 9733592 chr2L 9733654 9733684 11 90 2.5 4.0 3.2 2.6 122 chr2L 9733562 intron Nckx30C - chr2L 9733623 intron Nckx30C - chr2L 9733684 intron Nckx30C - chr2L_11_9730001 chr2L_9730001 RAL-738 209 chr2L 9843202 9843231 chr2L 9843283 9843292 9 78 0.0 1.5 0.8 5.0 90 chr2L 9843202 intron nAChRalpha6 - chr2L 9843247 intron nAChRalpha6 - chr2L 9843292 intron nAChRalpha6 - chr2L_9_9840001 chr2L_9840001 RAL-738 210 chr2L 9867219 9867249 chr2L 9867309 9867326 11 83 6.5 6.5 6.5 1.5 107 chr2L 9867219 intron nAChRalpha6 - chr2L 9867272 intron nAChRalpha6 - chr2L 9867326 intron nAChRalpha6 - chr2L_11_9865001 chr2L_9865001 RAL-738 211 chr2L 9973726 9973757 chr2L 9980845 9980851 HMS-Beagle 18 7115 7.5 9.0 8.2 2.0 7125 chr2L 9973726 intergenic not near genes chr2L 9977288 intergenic not near genes chr2L 9980851 intergenic not near genes chr2L_18_9975001 chr2L_9975001 RAL-738 212 chr2L 10051728 10051753 chr2L 10051809 10051826 9 74 11.0 4.5 7.8 1.0 98 chr2L 10051728 5` UTR CR44874 + chr2L 10051777 5` UTR CR44874 + chr2L 10051826 5` UTR CR44874 + chr2L_9_10050001 chr2L_10050001 RAL-738 213 chr2L 10136238 10136271 chr2L 10136320 10136335 10 75 6.5 1.0 3.8 2.1 97 chr2L 10136238 intron CG44153 - chr2L 10136286 intron CG44153 - chr2L 10136335 intron CG44153 - chr2L_10_10135001 chr2L_10135001 RAL-738 214 chr2L 10156321 10156351 chr2L 10163791 10163821 blood 10 7468 6.0 5.5 5.8 1.5 7500 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160071 intron CG44153 - chr2L 10163821 intron CG44153 - chr2L_10_10160001 chr2L_10160001 RAL-738 215 chr2L 10176541 10176570 chr2L 10176824 10176853 12 279 2.5 3.0 2.8 3.2 312 chr2L 10176541 intron CG44153 - chr2L 10176697 intron CG44153 - chr2L 10176853 intron CG44153 - chr2L_12_10175001 chr2L_10175001 RAL-738 216 chr2L 10180583 10180606 chr2L 10180670 10180693 5 85 0.5 0.0 0.2 4.2 110 chr2L 10180583 intergenic CG44153 - chr2L 10180638 intergenic CG44153 - chr2L 10180693 intergenic CG44153 - chr2L_5_10180001 chr2L_10180001 RAL-738 217 chr2L 10204502 10204531 chr2L 10204585 10204609 13 82 1.5 2.5 2.0 4.3 107 chr2L 10204502 intergenic CG34159 -,CG5734 - chr2L 10204556 intergenic CG5734 -,CG34159 - chr2L 10204609 intergenic CG5734 -,CG34159 - chr2L_13_10200001 chr2L_10200001 RAL-738 218 chr2L 10209856 10209862 chr2L 10209933 10209939 4 77 2.0 0.0 1.0 2.0 83 chr2L 10209856 3` UTR CG5727 - chr2L 10209898 3` UTR CG5727 - chr2L 10209939 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-738 219 chr2L 10480318 10480336 chr2L 10480389 10480409 12 77 5.0 2.0 3.5 2.7 91 chr2L 10480318 intron RluA-2 + chr2L 10480364 intron RluA-2 + chr2L 10480409 intron RluA-2 + chr2L_12_10480001 chr2L_10480001 RAL-738 220 chr2L 10580685 10580719 chr2L 10580760 10580771 9 67 3.5 7.5 5.5 1.4 86 chr2L 10580685 intron Trim9 + chr2L 10580728 intron Trim9 + chr2L 10580771 intron Trim9 + chr2L_9_10580001 chr2L_10580001 RAL-738 221 chr2L 10586512 10586535 chr2L 10586593 10586617 10 82 8.0 3.5 5.8 1.5 105 chr2L 10586512 intron Trim9 + chr2L 10586564 intron Trim9 + chr2L 10586617 intron Trim9 + chr2L_10_10585001 chr2L_10585001 RAL-738 222 chr2L 10592845 10592872 chr2L 10600506 10600529 opus 13 7661 1.5 4.5 3.0 3.2 7684 chr2L 10592845 intron Trim9 + chr2L 10596687 intron Trim9 + chr2L 10600529 intron Trim9 + chr2L_13_10595001 chr2L_10595001 RAL-738 223 chr2L 10604195 10604220 chr2L 10604279 10604299 5 82 5.0 0.0 2.5 1.4 104 chr2L 10604195 intron Trim9 + chr2L 10604247 intron Trim9 + chr2L 10604299 intron Trim9 + chr2L_5_10600001 chr2L_10600001 RAL-738 224 chr2L 10609450 10609463 chr2L 10609577 10609590 6 127 4.5 10.0 7.2 0.7 140 chr2L 10609450 intron Trim9 + chr2L 10609520 intron Trim9 + chr2L 10609590 intron Trim9 + chr2L_6_10605001 chr2L_10605001 RAL-738 225 chr2L 10631249 10631278 chr2L 10631340 10631369 12 90 3.0 0.5 1.8 4.3 120 chr2L 10631249 intron CG7329 - chr2L 10631309 intron CG7329 - chr2L 10631369 intron CG7329 - chr2L_12_10630001 chr2L_10630001 RAL-738 226 chr2L 10688546 10688562 chr2L 10688622 10688638 5 76 1.0 3.0 2.0 1.7 92 chr2L 10688546 intergenic CG7294 - chr2L 10688592 intergenic CG7294 - chr2L 10688638 intergenic CG7294 - chr2L_5_10685001 chr2L_10685001 RAL-738 227 chr2L 10752431 10752449 chr2L 10752547 10752566 9 117 2.0 6.0 4.0 1.8 135 chr2L 10752431 intron CG17124 - chr2L 10752498 intron CG17124 - chr2L 10752566 intron CG17124 - chr2L_9_10750001 chr2L_10750001 RAL-738 228 chr2L 10755567 10755598 chr2L 10755676 10755707 18 107 6.5 4.0 5.2 2.9 140 chr2L 10755567 intron CG17124 - chr2L 10755637 intron CG17124 - chr2L 10755707 intron CG17124 - chr2L_18_10755001 chr2L_10755001 RAL-738 229 chr2L 10788000 10788029 chr2L 10788076 10788105 5 75 0.0 3.5 1.8 1.8 105 chr2L 10788000 intron CG31869 - chr2L 10788052 intron CG31869 - chr2L 10788105 intron CG31869 - chr2L_5_10785001 chr2L_10785001 RAL-738 230 chr2L 10809523 10809555 chr2L 10809607 10809620 13 79 2.0 3.5 2.8 3.4 97 chr2L 10809523 intron Nos - chr2L 10809572 intron Nos - chr2L 10809620 intron Nos - chr2L_13_10805001 chr2L_10805001 RAL-738 231 chr2L 10850420 10850444 chr2L 10850628 10850662 21 211 4.5 10.5 7.5 2.5 242 chr2L 10850420 5` UTR,intron porin -,CG43129 + chr2L 10850541 5` UTR,intron porin -,CG43129 + chr2L 10850662 5` UTR,intron porin -,CG43129 + chr2L_21_10850001 chr2L_10850001 RAL-738 232 chr2L 10862848 10862859 chr2L 10864453 10864473 Rt1c 9 1611 9.0 6.5 7.8 1.0 1625 chr2L 10862848 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864473 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-738 233 chr2L 10862863 10862883 chr2L 10864451 10864460 Rt1c 7 1597 3.5 5.5 4.5 1.3 1597 chr2L 10862863 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864460 intron CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-738 234 chr2L 10912987 10913002 chr2L 10913066 10913081 8 79 9.5 5.0 7.2 1.0 94 chr2L 10912987 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913081 intergenic not near genes chr2L_8_10910001 chr2L_10910001 RAL-738 235 chr2L 10922270 10922284 chr2L 10922345 10922352 5 73 2.0 2.5 2.2 1.6 82 chr2L 10922270 intron dpr2 - chr2L 10922311 intron dpr2 - chr2L 10922352 intron dpr2 - chr2L_5_10920001 chr2L_10920001 RAL-738 236 chr2L 10945070 10945094 chr2L 10945329 10945353 9 259 4.0 4.5 4.2 1.7 283 chr2L 10945070 intron dpr2 - chr2L 10945212 intron dpr2 - chr2L 10945353 intron dpr2 - chr2L_9_10945001 chr2L_10945001 RAL-738 237 chr2L 10946951 10946976 chr2L 10956156 10956180 roo 16 9210 4.5 9.0 6.8 2.1 9229 chr2L 10946951 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956180 intron dpr2 - chr2L_16_10950001 chr2L_10950001 RAL-738 238 chr2L 11195132 11195156 chr2L 11195215 11195239 4 83 1.0 0.0 0.5 2.7 107 chr2L 11195132 intron Ca-beta - chr2L 11195186 intron Ca-beta - chr2L 11195239 intron Ca-beta - chr2L_4_11195001 chr2L_11195001 RAL-738 239 chr2L 11380620 11380643 chr2L 11380687 11380718 6 75 5.0 5.5 5.2 1.0 98 chr2L 11380620 intergenic not near genes chr2L 11380669 intergenic not near genes chr2L 11380718 intergenic not near genes chr2L_6_11380001 chr2L_11380001 RAL-738 240 chr2L 11399525 11399533 chr2L 11399602 11399610 4 77 6.0 3.5 4.8 0.7 85 chr2L 11399525 intergenic not near genes chr2L 11399568 intergenic not near genes chr2L 11399610 intergenic not near genes chr2L_4_11395001 chr2L_11395001 RAL-738 241 chr2L 11404784 11404805 chr2L 11404860 11404881 4 76 13.5 13.5 13.5 0.3 97 chr2L 11404784 intergenic not near genes chr2L 11404832 intergenic not near genes chr2L 11404881 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-738 242 chr2L 11455562 11455596 chr2L 11455647 11455670 20 79 2.0 7.5 4.8 3.4 108 chr2L 11455562 intergenic not near genes chr2L 11455616 intergenic not near genes chr2L 11455670 intergenic not near genes chr2L_20_11455001 chr2L_11455001 RAL-738 243 chr2L 11540586 11540616 chr2L 11547988 11548018 Tabor 13 7401 3.0 7.0 5.0 2.2 7432 chr2L 11540586 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548018 intergenic not near genes chr2L_13_11540001 chr2L_11540001 RAL-738 244 chr2L 11563642 11563647 chr2L 11568846 11568851 copia 5 5204 5.0 5.0 5.0 0.8 5209 chr2L 11563642 intergenic not near genes chr2L 11566246 intergenic not near genes chr2L 11568851 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-738 245 chr2L 11563660 11563667 chr2L 11568838 11568871 copia 4 5194 3.0 4.0 3.5 0.9 5211 chr2L 11563660 intergenic not near genes chr2L 11566266 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-738 246 chr2L 11612667 11612695 chr2L 11612750 11612766 13 86 9.5 9.0 9.2 1.3 99 chr2L 11612667 intron kek2 + chr2L 11612716 intron kek2 + chr2L 11612766 intron kek2 + chr2L_13_11610001 chr2L_11610001 RAL-738 247 chr2L 11657988 11658003 chr2L 11658056 11658088 8 76 8.5 8.0 8.2 0.9 100 chr2L 11657988 3` UTR CG43167 + chr2L 11658038 intergenic CG43167 + chr2L 11658088 intergenic CG43167 + chr2L_8_11655001 chr2L_11655001 RAL-738 248 chr2L 11672146 11672166 chr2L 11672253 11672273 5 107 3.0 4.0 3.5 1.1 127 chr2L 11672146 intergenic not near genes chr2L 11672210 intergenic not near genes chr2L 11672273 intergenic not near genes chr2L_5_11670001 chr2L_11670001 RAL-738 249 chr2L 11713506 11713540 chr2L 11720974 11721008 blood 15 7466 4.5 6.5 5.5 2.3 7502 chr2L 11713506 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_15_11715001 chr2L_11715001 RAL-738 250 chr2L 11841348 11841363 chr2L 11841445 11841460 7 97 4.5 2.0 3.2 1.7 112 chr2L 11841348 intron Pde1c - chr2L 11841404 intron Pde1c - chr2L 11841460 intron Pde1c - chr2L_7_11840001 chr2L_11840001 RAL-738 251 chr2L 11844189 11844219 chr2L 11844271 11844292 12 79 5.5 6.0 5.8 1.8 103 chr2L 11844189 intron Pde1c - chr2L 11844240 intron Pde1c - chr2L 11844292 intron Pde1c - chr2L_12_11840001 chr2L_11840001 RAL-738 252 chr2L 11956303 11956324 chr2L 11956387 11956421 7 92 11.0 10.5 10.8 0.6 118 chr2L 11956303 3` UTR CR43314 - chr2L 11956362 3` UTR CR43314 - chr2L 11956421 3` UTR CR43314 - chr2L_7_11955001 chr2L_11955001 RAL-738 253 chr2L 12031385 12031418 chr2L 12031466 12031489 14 80 3.5 4.5 4.0 2.8 104 chr2L 12031385 intron dmGlut + chr2L 12031437 intron dmGlut + chr2L 12031489 intron dmGlut + chr2L_14_12030001 chr2L_12030001 RAL-738 254 chr2L 12067328 12067353 chr2L 12074380 12074405 297 8 7052 4.0 1.5 2.8 2.1 7077 chr2L 12067328 intergenic not near genes chr2L 12070866 intergenic not near genes chr2L 12074405 intergenic not near genes chr2L_8_12070001 chr2L_12070001 RAL-738 255 chr2L 12190247 12190277 chr2L 12190342 12190370 12 90 10.0 7.5 8.8 1.2 123 chr2L 12190247 intron aret + chr2L 12190308 intron aret + chr2L 12190370 intron aret + chr2L_12_12190001 chr2L_12190001 RAL-738 256 chr2L 12254029 12254051 chr2L 12254121 12254143 7 92 3.0 0.0 1.5 2.8 114 chr2L 12254029 intron aret + chr2L 12254086 intron aret + chr2L 12254143 intron aret + chr2L_7_12250001 chr2L_12250001 RAL-738 257 chr2L 12272164 12272196 chr2L 12272240 12272272 8 75 2.5 2.5 2.5 2.3 108 chr2L 12272164 intron aret + chr2L 12272218 intron aret + chr2L 12272272 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-738 258 chr2L 12400481 12400507 chr2L 12404676 12404702 7 4195 38.0 34.0 36.0 0.2 4221 chr2L 12400481 intron Pkd2 + chr2L 12402592 intergenic not near genes chr2L 12404702 intron vir-1 - chr2L_7_12400001 chr2L_12400001 RAL-738 259 chr2L 12506011 12506035 chr2L 12506083 12506092 12 74 6.5 9.0 7.8 1.4 81 chr2L 12506011 intron bun - chr2L 12506052 intron bun - chr2L 12506092 intron bun - chr2L_12_12505001 chr2L_12505001 RAL-738 260 chr2L 12529248 12529251 chr2L 12529381 12529384 4 133 4.5 2.5 3.5 0.9 136 chr2L 12529248 intron bun - chr2L 12529316 intron bun - chr2L 12529384 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-738 261 chr2L 12529260 12529444 chr2L 12529377 12529520 18 75 5.0 2.5 3.8 3.8 260 chr2L 12529260 intron bun - chr2L 12529390 intron bun - chr2L 12529520 intron bun - chr2L_18_12525001 chr2L_12525001 RAL-738 262 chr2L 12530775 12530809 chr2L 12531128 12531162 6 353 3.5 7.5 5.5 0.9 387 chr2L 12530775 intron bun - chr2L 12530968 intron bun - chr2L 12531162 intron bun - chr2L_6_12530001 chr2L_12530001 RAL-738 263 chr2L 12558319 12558353 chr2L 12565448 12565482 HMS-Beagle 10 7129 3.5 2.0 2.8 2.6 7163 chr2L 12558319 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_10_12560001 chr2L_12560001 RAL-738 264 chr2L 12647594 12647620 chr2L 12647710 12647736 10 114 7.0 10.0 8.5 1.1 142 chr2L 12647594 intergenic not near genes chr2L 12647665 intergenic not near genes chr2L 12647736 intergenic not near genes chr2L_10_12645001 chr2L_12645001 RAL-738 265 chr2L 12684218 12684249 chr2L 12684299 12684329 4 77 3.0 3.0 3.0 1.0 111 chr2L 12684218 intron pdm2 + chr2L 12684274 intron pdm2 + chr2L 12684329 intron pdm2 + chr2L_4_12680001 chr2L_12680001 RAL-738 266 chr2L 12693838 12693873 chr2L 12693915 12693950 14 76 7.0 6.5 6.8 1.8 112 chr2L 12693838 exon CG6153 + chr2L 12693894 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693950 3` UTR CG5780 - chr2L_14_12690001 chr2L_12690001 RAL-738 267 chr2L 12728923 12728948 chr2L 12729165 12729172 pogo 8 237 2.0 3.0 2.5 2.3 249 chr2L 12728923 intron MRP + chr2L 12729048 intron MRP + chr2L 12729172 intron MRP + chr2L_8_12725001 chr2L_12725001 RAL-738 268 chr2L 12731058 12731081 chr2L 12735825 12735848 F-element 9 4767 3.5 3.0 3.2 2.1 4790 chr2L 12731058 intron MRP + chr2L 12733453 intron MRP + chr2L 12735848 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-738 269 chr2L 12739172 12739205 chr2L 12743952 12743980 Doc 20 4779 5.5 3.0 4.2 3.8 4808 chr2L 12739172 exon MRP + chr2L 12741576 intron MRP + chr2L 12743980 exon MRP + chr2L_20_12740001 chr2L_12740001 RAL-738 270 chr2L 12791613 12791620 chr2L 12795278 12795282 F-element 4 3666 7.5 7.0 7.2 0.5 3669 chr2L 12791613 intergenic not near genes chr2L 12793448 intergenic not near genes chr2L 12795282 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-738 271 chr2L 12791621 12791633 chr2L 12795276 12795308 F-element 6 3666 6.5 6.5 6.5 0.8 3687 chr2L 12791621 intergenic not near genes chr2L 12793464 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-738 272 chr2L 12809201 12809226 chr2L 12809284 12809312 10 86 3.5 5.0 4.2 1.9 111 chr2L 12809201 intergenic not near genes chr2L 12809256 intergenic not near genes chr2L 12809312 intergenic not near genes chr2L_10_12805001 chr2L_12805001 RAL-738 273 chr2L 12861702 12861722 chr2L 12863165 12863182 hobo 9 1463 6.0 7.0 6.5 1.2 1480 chr2L 12861702 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-738 274 chr2L 12894036 12894049 chr2L 12895491 12895516 hobo 4 1462 5.0 6.5 5.8 0.6 1480 chr2L 12894036 intergenic not near genes chr2L 12894776 intergenic not near genes chr2L 12895516 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-738 275 chr2L 12933852 12933882 chr2L 12941317 12941345 blood 14 7462 4.0 7.0 5.5 2.2 7493 chr2L 12933852 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941345 intergenic not near genes chr2L_14_12935001 chr2L_12935001 RAL-738 276 chr2L 13036247 13036270 chr2L 13036489 13036512 X-element 7 241 6.0 8.5 7.2 0.9 265 chr2L 13036247 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036512 intron CG9932 - chr2L_7_13035001 chr2L_13035001 RAL-738 277 chr2L 13076317 13076335 chr2L 13076415 13076433 5 98 15.5 20.0 17.8 0.3 116 chr2L 13076317 intergenic not near genes chr2L 13076375 intergenic not near genes chr2L 13076433 intergenic not near genes chr2L_5_13075001 chr2L_13075001 RAL-738 278 chr2L 13076155 13076185 chr2L 13076519 13076539 7 355 25.5 30.5 28.0 0.2 384 chr2L 13076155 intergenic not near genes chr2L 13076347 intergenic not near genes chr2L 13076539 intergenic not near genes chr2L_7_13075001 chr2L_13075001 RAL-738 279 chr2L 13097243 13097250 chr2L 13097415 13097439 4 180 9.5 7.5 8.5 0.4 196 chr2L 13097243 5` UTR CR45447 + chr2L 13097341 intergenic CR45447 + chr2L 13097439 intergenic CR45447 + chr2L_4_13095001 chr2L_13095001 RAL-738 280 chr2L 13097251 13097254 chr2L 13097414 13097423 4 170 8.5 7.5 8.0 0.4 172 chr2L 13097251 5` UTR CR45447 + chr2L 13097337 intergenic CR45447 + chr2L 13097423 intergenic CR45447 + chr2L_4_13095001 chr2L_13095001 RAL-738 281 chr2L 13136162 13136192 chr2L 13136242 13136272 12 79 5.5 5.5 5.5 1.8 110 chr2L 13136162 intergenic not near genes chr2L 13136217 intergenic not near genes chr2L 13136272 intergenic not near genes chr2L_12_13135001 chr2L_13135001 RAL-738 282 chr2L 13241959 13241991 chr2L 13244343 13244354 BS 10 2372 2.0 5.5 3.8 2.1 2395 chr2L 13241959 5` UTR CR45330 + chr2L 13243156 intron CR45330 + chr2L 13244354 5` UTR CR45330 + chr2L_10_13240001 chr2L_13240001 RAL-738 283 chr2L 13398718 13398749 chr2L 13398798 13398829 11 80 4.5 5.0 4.8 1.9 111 chr2L 13398718 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398774 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398829 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_11_13395001 chr2L_13395001 RAL-738 284 chr2L 13405649 13405653 chr2L 13410444 13410449 Doc 4 4796 11.0 5.0 8.0 0.4 4800 chr2L 13405649 exon CG7110 + chr2L 13408049 intron CG7110 + chr2L 13410449 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-738 285 chr2L 13405656 13405682 chr2L 13410443 13410461 Doc 16 4790 5.0 5.0 5.0 2.7 4805 chr2L 13405656 exon CG7110 + chr2L 13408058 intron CG7110 + chr2L 13410461 intron CG7110 + chr2L_16_13405001 chr2L_13405001 RAL-738 286 chr2L 13481449 13481467 chr2L 13482056 13482073 jockey 8 606 5.0 10.0 7.5 0.9 624 chr2L 13481449 intron CG42784 + chr2L 13481761 intron CG42784 + chr2L 13482073 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-738 287 chr2L 13517199 13517221 chr2L 13517287 13517298 8 84 10.5 16.0 13.2 0.6 99 chr2L 13517199 intron B4 - chr2L 13517248 intron B4 - chr2L 13517298 intron B4 - chr2L_8_13515001 chr2L_13515001 RAL-738 288 chr2L 13536279 13536295 chr2L 13536371 13536386 4 92 9.5 11.5 10.5 0.3 107 chr2L 13536279 intron B4 - chr2L 13536332 intron B4 - chr2L 13536386 intron B4 - chr2L_4_13535001 chr2L_13535001 RAL-738 289 chr2L 13560396 13560419 chr2L 13565217 13565240 F-element 6 4821 3.0 4.5 3.8 1.2 4844 chr2L 13560396 intron kuz + chr2L 13562818 intron kuz + chr2L 13565240 intron kuz + chr2L_6_13560001 chr2L_13560001 RAL-738 290 chr2L 13699553 13699576 chr2L 13699630 13699653 9 75 5.0 4.5 4.8 1.6 100 chr2L 13699553 intron CG31814 - chr2L 13699603 intron CG31814 - chr2L 13699653 intron CG31814 - chr2L_9_13695001 chr2L_13695001 RAL-738 291 chr2L 13699578 13699680 chr2L 13699629 13699897 5 96 24.0 4.5 14.2 0.3 319 chr2L 13699578 intron CG31814 - chr2L 13699738 intron CG31814 - chr2L 13699897 intron CG31814 - chr2L_5_13695001 chr2L_13695001 RAL-738 292 chr2L 13746734 13746767 chr2L 13746831 13746844 10 88 8.0 6.5 7.2 1.2 110 chr2L 13746734 intergenic CR44846 +,TM9SF4 + chr2L 13746789 intergenic CR44846 +,TM9SF4 + chr2L 13746844 intergenic CR44846 +,TM9SF4 + chr2L_10_13745001 chr2L_13745001 RAL-738 293 chr2L 13761808 13761839 chr2L 13762908 13762922 Doc 15 1101 7.5 3.0 5.2 2.4 1114 chr2L 13761808 intron TM9SF4 + chr2L 13762365 intron TM9SF4 + chr2L 13762922 intron TM9SF4 + chr2L_15_13760001 chr2L_13760001 RAL-738 294 chr2L 13853087 13853117 chr2L 13862234 13862249 roo 14 9148 6.5 5.0 5.8 2.1 9162 chr2L 13853087 intron CenG1A + chr2L 13857668 intron CenG1A + chr2L 13862249 intron CenG1A + chr2L_14_13855001 chr2L_13855001 RAL-738 295 chr2L 13918811 13918841 chr2L 13918898 13918928 8 85 5.0 4.5 4.8 1.4 117 chr2L 13918811 intron Ance-3 + chr2L 13918870 intron Ance-3 + chr2L 13918928 intron Ance-3 + chr2L_8_13915001 chr2L_13915001 RAL-738 296 chr2L 14222322 14222332 chr2L 14222391 14222419 6 81 5.5 6.0 5.8 0.9 97 chr2L 14222322 intron Dyrk2 - chr2L 14222370 intron Dyrk2 - chr2L 14222419 intron Dyrk2 - chr2L_6_14220001 chr2L_14220001 RAL-738 297 chr2L 14236239 14236260 chr2L 14236334 14236352 7 96 10.5 4.0 7.2 0.9 113 chr2L 14236239 5` UTR CR44728 + chr2L 14236296 5` UTR CR44728 + chr2L 14236352 intergenic CR44728 + chr2L_7_14235001 chr2L_14235001 RAL-738 298 chr2L 14333908 14333928 chr2L 14334008 14334028 8 100 3.0 3.5 3.2 1.9 120 chr2L 14333908 intergenic ms(2)34Fe +,CG33090 + chr2L 14333968 intergenic ms(2)34Fe +,CG33090 + chr2L 14334028 intergenic CG33090 +,ms(2)34Fe + chr2L_8_14330001 chr2L_14330001 RAL-738 299 chr2L 14367354 14367359 chr2L 14367433 14367437 7 79 4.0 1.5 2.8 1.8 83 chr2L 14367354 intergenic not near genes chr2L 14367396 intergenic not near genes chr2L 14367437 intergenic not near genes chr2L_7_14365001 chr2L_14365001 RAL-738 300 chr2L 14367859 14367891 chr2L 14367939 14367971 6 77 4.0 4.5 4.2 1.2 112 chr2L 14367859 intergenic not near genes chr2L 14367915 intergenic not near genes chr2L 14367971 intergenic not near genes chr2L_6_14365001 chr2L_14365001 RAL-738 301 chr2L 14378647 14378679 chr2L 14378726 14378758 12 77 4.5 0.0 2.2 3.8 111 chr2L 14378647 3` UTR ppk - chr2L 14378702 3` UTR ppk - chr2L 14378758 3` UTR ppk - chr2L_12_14375001 chr2L_14375001 RAL-738 302 chr2L 14396200 14396233 chr2L 14398956 14398989 14 2756 23.0 26.5 24.8 0.5 2789 chr2L 14396200 intron elB - chr2L 14397594 intron elB - chr2L 14398989 intron elB - chr2L_14_14395001 chr2L_14395001 RAL-738 303 chr2L 14396028 14396049 chr2L 14399137 14399166 13 3111 32.0 43.0 37.5 0.3 3138 chr2L 14396028 intron elB - chr2L 14397597 intron elB - chr2L 14399166 intron elB - chr2L_13_14395001 chr2L_14395001 RAL-738 304 chr2L 14462729 14462733 chr2L 14462816 14462820 4 87 4.5 0.0 2.2 1.2 91 chr2L 14462729 intergenic not near genes chr2L 14462774 intergenic not near genes chr2L 14462820 intergenic not near genes chr2L_4_14460001 chr2L_14460001 RAL-738 305 chr2L 14549153 14549179 chr2L 14549229 14549255 13 74 7.5 9.5 8.5 1.4 102 chr2L 14549153 intergenic CG4218 - chr2L 14549204 intergenic CG4218 - chr2L 14549255 intergenic CG4218 - chr2L_13_14545001 chr2L_14545001 RAL-738 306 chr2L 14564200 14564210 chr2L 14564276 14564280 4 74 3.5 5.0 4.2 0.8 80 chr2L 14564200 intergenic CG3473 - chr2L 14564240 intergenic not near genes chr2L 14564280 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-738 307 chr2L 14564223 14564230 chr2L 14564270 14564276 7 53 3.0 5.0 4.0 1.4 53 chr2L 14564223 intergenic CG3473 - chr2L 14564250 intergenic not near genes chr2L 14564276 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-738 308 chr2L 14576707 14576713 chr2L 14576799 14576806 8 92 5.5 14.5 10.0 0.7 99 chr2L 14576707 5` UTR CR44856 + chr2L 14576756 5` UTR CR44856 + chr2L 14576806 5` UTR CR44856 + chr2L_8_14575001 chr2L_14575001 RAL-738 309 chr2L 14576720 14576726 chr2L 14576795 14576811 4 81 5.5 12.5 9.0 0.4 91 chr2L 14576720 5` UTR CR44856 + chr2L 14576766 5` UTR CR44856 + chr2L 14576811 5` UTR CR44856 + chr2L_4_14575001 chr2L_14575001 RAL-738 310 chr2L 14588382 14588417 chr2L 14588535 14588565 11 153 2.5 5.0 3.8 2.3 183 chr2L 14588382 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588565 intergenic CG42680 - chr2L_11_14585001 chr2L_14585001 RAL-738 311 chr2L 14686290 14686318 chr2L 14686368 14686396 9 76 5.0 5.5 5.2 1.5 106 chr2L 14686290 intron osp - chr2L 14686343 intron osp - chr2L 14686396 intron osp - chr2L_9_14685001 chr2L_14685001 RAL-738 312 chr2L 14694257 14694287 chr2L 14694381 14694411 12 124 3.0 6.5 4.8 2.1 154 chr2L 14694257 intergenic not near genes chr2L 14694334 intergenic not near genes chr2L 14694411 intergenic not near genes chr2L_12_14690001 chr2L_14690001 RAL-738 313 chr2L 14707206 14707238 chr2L 14707325 14707357 21 117 9.0 6.0 7.5 2.5 151 chr2L 14707206 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707357 intergenic not near genes chr2L_21_14705001 chr2L_14705001 RAL-738 314 chr2L 14707584 14707610 chr2L 14708589 14708615 7 1005 13.0 21.0 17.0 0.4 1031 chr2L 14707584 intergenic not near genes chr2L 14708100 intergenic not near genes chr2L 14708615 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-738 315 chr2L 14706727 14706765 chr2L 14708989 14709027 10 2263 32.0 34.5 33.2 0.3 2300 chr2L 14706727 intergenic not near genes chr2L 14707877 intergenic not near genes chr2L 14709027 intergenic not near genes chr2L_10_14705001 chr2L_14705001 RAL-738 316 chr2L 14747538 14747559 chr2L 14747618 14747630 6 82 9.0 12.0 10.5 0.5 92 chr2L 14747538 intergenic not near genes chr2L 14747584 intergenic not near genes chr2L 14747630 intergenic not near genes chr2L_6_14745001 chr2L_14745001 RAL-738 317 chr2L 14768932 14768956 chr2L 14769009 14769034 4 78 18.0 18.0 18.0 0.2 102 chr2L 14768932 intergenic not near genes chr2L 14768983 intergenic not near genes chr2L 14769034 intergenic not near genes chr2L_4_14765001 chr2L_14765001 RAL-738 318 chr2L 14803877 14803913 chr2L 14809080 14809116 copia 13 5197 4.5 6.5 5.5 2.0 5239 chr2L 14803877 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_13_14805001 chr2L_14805001 RAL-738 319 chr2L 14839749 14839773 chr2L 14839825 14839849 6 74 8.0 10.0 9.0 0.6 100 chr2L 14839749 intergenic not near genes chr2L 14839799 intergenic not near genes chr2L 14839849 intergenic not near genes chr2L_6_14835001 chr2L_14835001 RAL-738 320 chr2L 14840976 14841010 chr2L 14841062 14841081 12 83 1.0 5.0 3.0 3.0 105 chr2L 14840976 3` UTR CR43805 - chr2L 14841028 3` UTR CR43805 - chr2L 14841081 3` UTR CR43805 - chr2L_12_14840001 chr2L_14840001 RAL-738 321 chr2L 14853285 14853316 chr2L 14853574 14853605 9 288 8.5 7.5 8.0 1.0 320 chr2L 14853285 intergenic not near genes chr2L 14853445 intergenic not near genes chr2L 14853605 intergenic not near genes chr2L_9_14850001 chr2L_14850001 RAL-738 322 chr2L 14889972 14889988 chr2L 14890377 14890413 jockey 12 419 4.5 2.0 3.2 2.9 441 chr2L 14889972 intergenic not near genes chr2L 14890192 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_12_14890001 chr2L_14890001 RAL-738 323 chr2L 14984377 14984401 chr2L 14991981 14992003 opus 6 7602 4.0 4.0 4.0 1.2 7626 chr2L 14984377 intron mol - chr2L 14988190 intron mol - chr2L 14992003 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-738 324 chr2L 15000861 15000880 chr2L 15000993 15001006 5 127 21.5 19.5 20.5 0.2 145 chr2L 15000861 intergenic not near genes chr2L 15000934 intergenic not near genes chr2L 15001006 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-738 325 chr2L 15021452 15021470 chr2L 15021528 15021546 5 76 9.5 11.0 10.2 0.4 94 chr2L 15021452 intron GABA-B-R1 + chr2L 15021499 intron GABA-B-R1 + chr2L 15021546 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-738 326 chr2L 15044707 15044737 chr2L 15044783 15044813 9 73 4.0 1.0 2.5 2.6 106 chr2L 15044707 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044813 intergenic ck - chr2L_9_15040001 chr2L_15040001 RAL-738 327 chr2L 15078070 15078101 chr2L 15078158 15078189 16 86 2.5 7.5 5.0 2.7 119 chr2L 15078070 intron CG15270 + chr2L 15078130 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_16_15075001 chr2L_15075001 RAL-738 328 chr2L 15080739 15080763 chr2L 15081145 15081169 6 406 12.0 12.0 12.0 0.5 430 chr2L 15080739 intron CG15270 + chr2L 15080954 intron CG15270 + chr2L 15081169 intron CG15270 + chr2L_6_15080001 chr2L_15080001 RAL-738 329 chr2L 15122779 15122809 chr2L 15122859 15122889 9 77 0.5 3.0 1.8 3.2 110 chr2L 15122779 intergenic not near genes chr2L 15122834 intergenic not near genes chr2L 15122889 intergenic not near genes chr2L_9_15120001 chr2L_15120001 RAL-738 330 chr2L 15137779 15137788 chr2L 15137862 15137872 4 84 10.5 5.0 7.8 0.5 93 chr2L 15137779 intergenic not near genes chr2L 15137826 intergenic not near genes chr2L 15137872 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-738 331 chr2L 15161258 15161274 chr2L 15161394 15161410 5 135 6.0 10.5 8.2 0.5 152 chr2L 15161258 intergenic CR44770 + chr2L 15161334 intergenic CR44770 + chr2L 15161410 intergenic CR44770 +,CG4168 - chr2L_5_15160001 chr2L_15160001 RAL-738 332 chr2L 15226374 15226393 chr2L 15226443 15226469 5 72 3.0 4.0 3.5 1.1 95 chr2L 15226374 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226469 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-738 333 chr2L 15233932 15233958 chr2L 15234027 15234029 13 94 8.0 16.5 12.2 1.0 97 chr2L 15233932 intron ZnT35C - chr2L 15233980 intron ZnT35C - chr2L 15234029 intron ZnT35C - chr2L_13_15230001 chr2L_15230001 RAL-738 334 chr2L 15252997 15253003 chr2L 15253068 15253082 4 77 7.0 6.0 6.5 0.5 85 chr2L 15252997 intron dao + chr2L 15253040 intron dao + chr2L 15253082 intron dao + chr2L_4_15250001 chr2L_15250001 RAL-738 335 chr2L 15285383 15285405 chr2L 15285485 15285497 7 100 25.5 25.0 25.2 0.3 114 chr2L 15285383 exon CG15263 + chr2L 15285440 exon CG15263 + chr2L 15285497 exon CG15263 + chr2L_7_15285001 chr2L_15285001 RAL-738 336 chr2L 15352968 15353002 chr2L 15353044 15353078 5 76 11.0 10.0 10.5 0.4 110 chr2L 15352968 intergenic not near genes chr2L 15353023 intergenic not near genes chr2L 15353078 intergenic not near genes chr2L_5_15350001 chr2L_15350001 RAL-738 337 chr2L 15375831 15375841 chr2L 15375943 15375953 4 112 3.0 6.5 4.8 0.7 122 chr2L 15375831 intergenic not near genes chr2L 15375892 intergenic not near genes chr2L 15375953 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-738 338 chr2L 15446062 15446083 chr2L 15453531 15453550 blood 4 7468 6.5 3.5 5.0 0.7 7488 chr2L 15446062 intergenic not near genes chr2L 15449806 intergenic not near genes chr2L 15453550 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-738 339 chr2L 15510952 15510966 chr2L 15511031 15511060 7 89 9.0 14.0 11.5 0.6 108 chr2L 15510952 intergenic not near genes chr2L 15511006 intergenic not near genes chr2L 15511060 intergenic not near genes chr2L_7_15510001 chr2L_15510001 RAL-738 340 chr2L 15514321 15514328 chr2L 15514405 15514412 6 84 11.0 13.5 12.2 0.5 91 chr2L 15514321 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514412 intergenic not near genes chr2L_6_15510001 chr2L_15510001 RAL-738 341 chr2L 15535884 15535917 chr2L 15535974 15536007 9 90 14.5 15.5 15.0 0.6 123 chr2L 15535884 intergenic not near genes chr2L 15535946 intergenic not near genes chr2L 15536007 intergenic not near genes chr2L_9_15535001 chr2L_15535001 RAL-738 342 chr2L 15586414 15586439 chr2L 15593466 15593491 297 10 7051 3.0 4.5 3.8 2.1 7077 chr2L 15586414 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_10_15585001 chr2L_15585001 RAL-738 343 chr2L 15776402 15776414 chr2L 15776497 15776509 4 95 7.5 12.0 9.8 0.4 107 chr2L 15776402 intergenic CG43760 - chr2L 15776456 3` UTR CG43760 - chr2L 15776509 3` UTR CG43760 - chr2L_4_15775001 chr2L_15775001 RAL-738 344 chr2L 15790184 15790218 chr2L 15790260 15790294 10 76 2.0 4.0 3.0 2.5 110 chr2L 15790184 intergenic CG18109 + chr2L 15790239 intergenic CG18109 + chr2L 15790294 intergenic CG18109 + chr2L_10_15790001 chr2L_15790001 RAL-738 345 chr2L 15823351 15823367 chr2L 15823426 15823442 8 76 7.0 4.5 5.8 1.2 91 chr2L 15823351 intergenic CR44601 - chr2L 15823396 intergenic CR44601 - chr2L 15823442 intergenic CR44601 - chr2L_8_15820001 chr2L_15820001 RAL-738 346 chr2L 15887727 15887744 chr2L 15887849 15887877 8 131 8.0 4.5 6.2 1.1 150 chr2L 15887727 intergenic not near genes chr2L 15887802 intergenic not near genes chr2L 15887877 intergenic not near genes chr2L_8_15885001 chr2L_15885001 RAL-738 347 chr2L 15906186 15906207 chr2L 15906273 15906287 6 85 3.5 8.0 5.8 0.9 101 chr2L 15906186 intron beat-Ib - chr2L 15906236 intron beat-Ib - chr2L 15906287 intron beat-Ib - chr2L_6_15905001 chr2L_15905001 RAL-738 348 chr2L 15935209 15935221 chr2L 15935298 15935305 4 88 4.0 5.5 4.8 0.7 96 chr2L 15935209 intron beat-Ib - chr2L 15935257 intron beat-Ib - chr2L 15935305 intron beat-Ib - chr2L_4_15935001 chr2L_15935001 RAL-738 349 chr2L 15947160 15947188 chr2L 15947235 15947251 8 78 7.5 4.5 6.0 1.1 91 chr2L 15947160 intron beat-Ib - chr2L 15947206 intron beat-Ib - chr2L 15947251 intron beat-Ib - chr2L_8_15945001 chr2L_15945001 RAL-738 350 chr2L 15956024 15956041 chr2L 15957491 15957508 hobo 6 1466 13.0 4.5 8.8 0.6 1484 chr2L 15956024 intron beat-Ib - chr2L 15956766 intron beat-Ib - chr2L 15957508 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-738 351 chr2L 15956043 15956055 chr2L 15957489 15957506 hobo 9 1455 8.5 4.5 6.5 1.2 1463 chr2L 15956043 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957506 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-738 352 chr2L 16001478 16001489 chr2L 16001566 16001577 4 87 3.0 4.0 3.5 0.9 99 chr2L 16001478 intron beat-Ic + chr2L 16001528 intron beat-Ic + chr2L 16001577 intron beat-Ic + chr2L_4_16000001 chr2L_16000001 RAL-738 353 chr2L 16005641 16005654 chr2L 16005750 16005763 4 109 0.5 4.5 2.5 1.1 122 chr2L 16005641 intron beat-Ic + chr2L 16005702 intron beat-Ic + chr2L 16005763 intron beat-Ic + chr2L_4_16005001 chr2L_16005001 RAL-738 354 chr2L 16043565 16043598 chr2L 16043650 16043683 5 85 2.5 4.5 3.5 1.1 118 chr2L 16043565 intron,intron BicC +,CG45084 + chr2L 16043624 intron,intron BicC +,CG45084 + chr2L 16043683 intron,intron BicC +,CG45084 + chr2L_5_16040001 chr2L_16040001 RAL-738 355 chr2L 16051604 16051627 chr2L 16051683 16051706 5 77 8.5 7.0 7.8 0.6 102 chr2L 16051604 intron beat-Ia + chr2L 16051655 intron beat-Ia + chr2L 16051706 intron beat-Ia + chr2L_5_16050001 chr2L_16050001 RAL-738 356 chr2L 16062292 16062311 chr2L 16062598 16062621 8 310 11.0 5.0 8.0 0.9 329 chr2L 16062292 intron beat-Ia + chr2L 16062456 intron beat-Ia + chr2L 16062621 intron beat-Ia + chr2L_8_16060001 chr2L_16060001 RAL-738 357 chr2L 16141167 16141195 chr2L 16146374 16146402 copia 14 5207 5.0 1.5 3.2 3.3 5235 chr2L 16141167 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_14_16140001 chr2L_16140001 RAL-738 358 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133322 19.0 42.5 30.8 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-738 359 chr2L 16217660 16217660 chr2L 18622712 18622719 4 2405057 40.0 32.5 36.2 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-738 360 chr2L 16280256 16280275 chr2L 16281425 16281427 1360 7 1163 5.0 4.5 4.8 1.2 1171 chr2L 16280256 intron crp - chr2L 16280842 intron crp - chr2L 16281427 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-738 361 chr2L 16309162 16309197 chr2L 16309247 16309283 7 86 8.0 9.0 8.5 0.7 121 chr2L 16309162 3` UTR Syx5 + chr2L 16309222 3` UTR Syx5 + chr2L 16309283 intergenic cni -,Syx5 + chr2L_7_16305001 chr2L_16305001 RAL-738 362 chr2L 16354774 16354784 chr2L 16354866 16354871 4 90 1.5 5.0 3.2 1.0 97 chr2L 16354774 intergenic CaBP1 -,CG4455 + chr2L 16354822 intergenic CaBP1 -,CG4455 + chr2L 16354871 intergenic CaBP1 -,CG4455 + chr2L_4_16350001 chr2L_16350001 RAL-738 363 chr2L 16356821 16356849 chr2L 16356900 16356928 9 73 6.0 9.0 7.5 1.1 107 chr2L 16356821 intergenic CaBP1 - chr2L 16356874 intergenic CaBP1 - chr2L 16356928 intergenic CaBP1 - chr2L_9_16355001 chr2L_16355001 RAL-738 364 chr2L 16363945 16363974 chr2L 16364190 16364220 5 246 4.0 0.0 2.0 1.7 275 chr2L 16363945 intergenic not near genes chr2L 16364082 intergenic not near genes chr2L 16364220 intergenic not near genes chr2L_5_16360001 chr2L_16360001 RAL-738 365 chr2L 16394914 16394939 chr2L 16395000 16395024 5 82 4.0 7.0 5.5 0.8 110 chr2L 16394914 intergenic not near genes chr2L 16394969 intergenic not near genes chr2L 16395024 intergenic not near genes chr2L_5_16390001 chr2L_16390001 RAL-738 366 chr2L 16654722 16654734 chr2L 16654801 16654827 5 89 20.0 18.5 19.2 0.2 105 chr2L 16654722 intron CG42389 + chr2L 16654774 intron CG42389 + chr2L 16654827 intron CG42389 + chr2L_5_16650001 chr2L_16650001 RAL-738 367 chr2L 16709098 16709104 chr2L 16709162 16709188 6 80 1.5 7.0 4.2 1.2 90 chr2L 16709098 intron CG31808 - chr2L 16709143 intron CG31808 - chr2L 16709188 intron CG31808 - chr2L_6_16705001 chr2L_16705001 RAL-738 368 chr2L 16728927 16728954 chr2L 16729561 16729589 4 635 8.5 9.5 9.0 0.4 662 chr2L 16728927 intergenic not near genes chr2L 16729258 intergenic not near genes chr2L 16729589 intergenic CG31812 + chr2L_4_16725001 chr2L_16725001 RAL-738 369 chr2L 16764970 16764999 chr2L 16765050 16765079 10 78 2.5 3.5 3.0 2.5 109 chr2L 16764970 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765079 intergenic not near genes chr2L_10_16765001 chr2L_16765001 RAL-738 370 chr2L 16852787 16852806 chr2L 16859929 16859948 Doc4-element 8 7142 11.5 5.5 8.5 0.8 7161 chr2L 16852787 intergenic CG31810 - chr2L 16856368 intron CG31809 - chr2L 16859948 intergenic CG6012 - chr2L_8_16855001 chr2L_16855001 RAL-738 371 chr2L 16949612 16949646 chr2L 16949696 16949730 17 84 4.0 6.5 5.2 2.7 118 chr2L 16949612 intron CR44393 - chr2L 16949671 intron CR44393 - chr2L 16949730 intron CR44393 - chr2L_17_16945001 chr2L_16945001 RAL-738 372 chr2L 16958104 16958131 chr2L 16962892 16962919 Doc 8 4787 2.0 4.0 3.0 2.0 4815 chr2L 16958104 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962919 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-738 373 chr2L 16968235 16968267 chr2L 16968325 16968357 10 90 8.0 5.0 6.5 1.3 122 chr2L 16968235 intergenic not near genes chr2L 16968296 intergenic not near genes chr2L 16968357 intergenic not near genes chr2L_10_16965001 chr2L_16965001 RAL-738 374 chr2L 17000119 17000149 chr2L 17000241 17000262 8 117 8.0 4.5 6.2 1.1 143 chr2L 17000119 intergenic not near genes chr2L 17000190 intergenic not near genes chr2L 17000262 intergenic not near genes chr2L_8_17000001 chr2L_17000001 RAL-738 375 chr2L 17070203 17070212 chr2L 17070299 17070308 4 95 3.0 6.0 4.5 0.7 105 chr2L 17070203 intergenic not near genes chr2L 17070256 intergenic not near genes chr2L 17070308 intergenic not near genes chr2L_4_17070001 chr2L_17070001 RAL-738 376 chr2L 17088860 17088876 chr2L 17088926 17088946 6 75 6.5 6.5 6.5 0.8 86 chr2L 17088860 3` UTR CG12620 + chr2L 17088903 3` UTR CG12620 + chr2L 17088946 3` UTR CG12620 + chr2L_6_17085001 chr2L_17085001 RAL-738 377 chr2L 17158728 17158753 chr2L 17158831 17158833 8 100 3.5 3.5 3.5 1.8 105 chr2L 17158728 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158780 intron,intron CG34106 +,beat-IIIa + chr2L 17158833 intron,intron CG34106 +,beat-IIIa + chr2L_8_17155001 chr2L_17155001 RAL-738 378 chr2L 17167570 17167581 chr2L 17167811 17167822 pogo 4 240 6.0 4.0 5.0 0.7 252 chr2L 17167570 intron,intron CG34106 +,beat-IIIa + chr2L 17167696 intron,intron CG34106 +,beat-IIIa + chr2L 17167822 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-738 379 chr2L 17167582 17167595 chr2L 17167807 17167836 pogo 7 239 4.0 3.0 3.5 1.6 254 chr2L 17167582 intron,intron CG34106 +,beat-IIIa + chr2L 17167709 intron,intron CG34106 +,beat-IIIa + chr2L 17167836 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-738 380 chr2L 17181445 17181477 chr2L 17181529 17181547 11 79 5.0 4.5 4.8 1.9 102 chr2L 17181445 intron Gr36c + chr2L 17181496 exon Gr36c + chr2L 17181547 exon Gr36c + chr2L_11_17180001 chr2L_17180001 RAL-738 381 chr2L 17199162 17199192 chr2L 17200629 17200659 hobo 11 1467 5.5 3.5 4.5 2.0 1497 chr2L 17199162 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200659 intron beat-IIIc - chr2L_11_17195001 chr2L_17195001 RAL-738 382 chr2L 17226740 17226760 chr2L 17226822 17226841 6 82 3.5 7.0 5.2 1.0 101 chr2L 17226740 intron beat-IIIc - chr2L 17226790 intron beat-IIIc - chr2L 17226841 intron beat-IIIc - chr2L_6_17225001 chr2L_17225001 RAL-738 383 chr2L 17239041 17239072 chr2L 17239125 17239156 8 84 6.5 9.0 7.8 0.9 115 chr2L 17239041 intron beat-IIIc - chr2L 17239098 intron beat-IIIc - chr2L 17239156 intron beat-IIIc - chr2L_8_17235001 chr2L_17235001 RAL-738 384 chr2L 17264743 17264774 chr2L 17264823 17264854 11 79 3.0 4.5 3.8 2.3 111 chr2L 17264743 intergenic not near genes chr2L 17264798 intergenic not near genes chr2L 17264854 intergenic not near genes chr2L_11_17260001 chr2L_17260001 RAL-738 385 chr2L 17273189 17273229 chr2L 17277972 17277997 F-element 13 4776 5.5 5.0 5.2 2.1 4808 chr2L 17273189 intergenic not near genes chr2L 17275593 intergenic not near genes chr2L 17277997 intergenic not near genes chr2L_13_17275001 chr2L_17275001 RAL-738 386 chr2L 17296284 17296314 chr2L 17296368 17296383 10 77 7.0 8.5 7.8 1.1 99 chr2L 17296284 intergenic not near genes chr2L 17296334 intergenic not near genes chr2L 17296383 intergenic not near genes chr2L_10_17295001 chr2L_17295001 RAL-738 387 chr2L 17327923 17327927 chr2L 17327992 17328013 4 82 9.5 5.0 7.2 0.5 90 chr2L 17327923 intergenic not near genes chr2L 17327968 intergenic not near genes chr2L 17328013 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-738 388 chr2L 17329070 17329103 chr2L 17329198 17329231 8 128 2.5 4.5 3.5 1.8 161 chr2L 17329070 intergenic not near genes chr2L 17329150 intergenic not near genes chr2L 17329231 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-738 389 chr2L 17335549 17335581 chr2L 17336715 17336747 1360 5 1165 2.0 2.5 2.2 1.6 1198 chr2L 17335549 intergenic not near genes chr2L 17336148 intergenic not near genes chr2L 17336747 intergenic not near genes chr2L_5_17335001 chr2L_17335001 RAL-738 390 chr2L 17344878 17344899 chr2L 17344955 17344976 8 77 1.0 5.5 3.2 1.9 98 chr2L 17344878 intergenic not near genes chr2L 17344927 intergenic not near genes chr2L 17344976 intergenic not near genes chr2L_8_17340001 chr2L_17340001 RAL-738 391 chr2L 17351056 17351063 chr2L 17351158 17351165 5 102 15.0 9.5 12.2 0.4 109 chr2L 17351056 intergenic not near genes chr2L 17351110 intergenic not near genes chr2L 17351165 intergenic not near genes chr2L_5_17350001 chr2L_17350001 RAL-738 392 chr2L 17351064 17351079 chr2L 17351155 17351164 10 95 9.0 8.0 8.5 1.1 100 chr2L 17351064 intergenic not near genes chr2L 17351114 intergenic not near genes chr2L 17351164 intergenic not near genes chr2L_10_17350001 chr2L_17350001 RAL-738 393 chr2L 17353055 17353083 chr2L 17353132 17353161 7 77 2.5 0.5 1.5 2.8 106 chr2L 17353055 intergenic not near genes chr2L 17353108 intergenic not near genes chr2L 17353161 intergenic not near genes chr2L_7_17350001 chr2L_17350001 RAL-738 394 chr2L 17424870 17424878 chr2L 17424934 17424957 6 69 4.0 5.5 4.8 1.0 87 chr2L 17424870 intron Dif - chr2L 17424914 intron Dif - chr2L 17424957 intron Dif - chr2L_6_17420001 chr2L_17420001 RAL-738 395 chr2L 17432017 17432044 chr2L 17432124 17432151 1360 10 107 2.0 3.0 2.5 2.9 134 chr2L 17432017 intron Dif - chr2L 17432084 intron Dif - chr2L 17432151 intron Dif - chr2L_10_17430001 chr2L_17430001 RAL-738 396 chr2L 17503236 17503246 chr2L 17503313 17503323 4 77 29.0 25.0 27.0 0.1 87 chr2L 17503236 intron Dhc36C + chr2L 17503280 intron Dhc36C + chr2L 17503323 intron Dhc36C + chr2L_4_17500001 chr2L_17500001 RAL-738 397 chr2L 17687516 17687522 chr2L 17692261 17692267 F-element 6 4745 3.5 2.5 3.0 1.5 4751 chr2L 17687516 intron CadN - chr2L 17689892 intron CadN - chr2L 17692267 intron CadN - chr2L_6_17685001 chr2L_17685001 RAL-738 398 chr2L 17819920 17819955 chr2L 17825123 17825158 copia 8 5202 3.5 2.5 3.0 2.0 5238 chr2L 17819920 intron CadN2 - chr2L 17822539 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_8_17820001 chr2L_17820001 RAL-738 399 chr2L 17879631 17879666 chr2L 17879711 17879747 10 80 8.5 8.5 8.5 1.1 116 chr2L 17879631 intergenic not near genes chr2L 17879689 intergenic not near genes chr2L 17879747 intergenic not near genes chr2L_10_17875001 chr2L_17875001 RAL-738 400 chr2L 17911982 17911990 chr2L 17914136 17914162 pogo 5 2172 4.5 4.5 4.5 0.9 2180 chr2L 17911982 intergenic not near genes chr2L 17913072 intergenic not near genes chr2L 17914162 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-738 401 chr2L 17943887 17943922 chr2L 17943990 17944025 15 99 2.0 2.0 2.0 5.0 138 chr2L 17943887 intergenic not near genes chr2L 17943956 intergenic not near genes chr2L 17944025 intergenic not near genes chr2L_15_17940001 chr2L_17940001 RAL-738 402 chr2L 17951946 17951954 chr2L 17953413 17953420 hobo 4 1467 6.5 5.5 6.0 0.6 1474 chr2L 17951946 intergenic CR44398 -,CR44397 - chr2L 17952683 intergenic not near genes chr2L 17953420 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-738 403 chr2L 17951955 17951973 chr2L 17953412 17953440 hobo 8 1464 1.5 5.5 3.5 1.8 1485 chr2L 17951955 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953440 intergenic not near genes chr2L_8_17950001 chr2L_17950001 RAL-738 404 chr2L 18009738 18009767 chr2L 18009816 18009844 7 77 11.0 13.5 12.2 0.5 106 chr2L 18009738 3` UTR elfless - chr2L 18009791 3` UTR elfless - chr2L 18009844 3` UTR elfless - chr2L_7_18005001 chr2L_18005001 RAL-738 405 chr2L 18027782 18027815 chr2L 18027869 18027902 7 85 7.0 8.5 7.8 0.8 120 chr2L 18027782 intron rdo + chr2L 18027842 intron rdo + chr2L 18027902 intron rdo + chr2L_7_18025001 chr2L_18025001 RAL-738 406 chr2L 18045694 18045714 chr2L 18045901 18045921 8 206 11.0 12.0 11.5 0.6 227 chr2L 18045694 intron rdo + chr2L 18045808 intron rdo + chr2L 18045921 intron rdo + chr2L_8_18045001 chr2L_18045001 RAL-738 407 chr2L 18051878 18051902 chr2L 18061025 18061033 roo 7 9144 7.0 5.5 6.2 1.0 9155 chr2L 18051878 intron rdo + chr2L 18056456 intron rdo + chr2L 18061033 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-738 408 chr2L 18111243 18111267 chr2L 18111333 18111348 11 89 4.5 4.0 4.2 2.1 105 chr2L 18111243 intergenic not near genes chr2L 18111296 intergenic not near genes chr2L 18111348 intergenic not near genes chr2L_11_18110001 chr2L_18110001 RAL-738 409 chr2L 18306767 18306796 chr2L 18307124 18307153 4 357 18.5 16.0 17.2 0.2 386 chr2L 18306767 intergenic not near genes chr2L 18306960 intergenic not near genes chr2L 18307153 intergenic not near genes chr2L_4_18305001 chr2L_18305001 RAL-738 410 chr2L 18334616 18334636 chr2L 18334701 18334706 5 82 19.5 18.0 18.8 0.3 90 chr2L 18334616 intron Fas3 + chr2L 18334661 intron Fas3 + chr2L 18334706 intron Fas3 + chr2L_5_18330001 chr2L_18330001 RAL-738 411 chr2L 18364260 18364287 chr2L 18364360 18364387 6 100 3.5 5.0 4.2 1.2 127 chr2L 18364260 intron Fas3 + chr2L 18364324 intron Fas3 + chr2L 18364387 intron Fas3 + chr2L_6_18360001 chr2L_18360001 RAL-738 412 chr2L 18394764 18394799 chr2L 18394953 18394988 19 187 4.5 10.5 7.5 2.2 224 chr2L 18394764 intergenic not near genes chr2L 18394876 intergenic not near genes chr2L 18394988 intergenic not near genes chr2L_19_18390001 chr2L_18390001 RAL-738 413 chr2L 18408023 18408055 chr2L 18412807 18412839 Doc 13 4782 4.5 0.0 2.2 4.1 4816 chr2L 18408023 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_13_18410001 chr2L_18410001 RAL-738 414 chr2L 18423853 18423873 chr2L 18423944 18423964 7 91 1.0 1.5 1.2 3.2 111 chr2L 18423853 intergenic not near genes chr2L 18423908 intergenic not near genes chr2L 18423964 intergenic not near genes chr2L_7_18420001 chr2L_18420001 RAL-738 415 chr2L 18442359 18442376 chr2L 18442438 18442455 8 78 5.5 12.0 8.8 0.8 96 chr2L 18442359 3` UTR RpS26 - chr2L 18442407 3` UTR RpS26 - chr2L 18442455 3` UTR RpS26 - chr2L_8_18440001 chr2L_18440001 RAL-738 416 chr2L 18552065 18552099 chr2L 18552160 18552194 10 95 3.5 5.5 4.5 1.8 129 chr2L 18552065 intron Pde11 - chr2L 18552130 intron Pde11 - chr2L 18552194 intron Pde11 - chr2L_10_18550001 chr2L_18550001 RAL-738 417 chr2L 18584754 18584776 chr2L 18584839 18584861 5 85 17.0 16.5 16.8 0.3 107 chr2L 18584754 intron Pde11 - chr2L 18584808 intron Pde11 - chr2L 18584861 intron Pde11 - chr2L_5_18580001 chr2L_18580001 RAL-738 418 chr2L 16217660 16217660 chr2L 18622718 18622719 9 2405058 40.0 32.0 36.0 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-738 419 chr2L 18630810 18630826 chr2L 18630883 18630907 7 80 3.0 5.0 4.0 1.4 97 chr2L 18630810 intron MESR3 + chr2L 18630858 intron MESR3 + chr2L 18630907 intron MESR3 + chr2L_7_18630001 chr2L_18630001 RAL-738 420 chr2L 18745144 18745170 chr2L 18745231 18745257 9 81 7.5 3.0 5.2 1.5 113 chr2L 18745144 intergenic not near genes chr2L 18745200 intergenic not near genes chr2L 18745257 intergenic not near genes chr2L_9_18745001 chr2L_18745001 RAL-738 421 chr2L 18791069 18791096 chr2L 18791147 18791148 8 75 12.5 5.5 9.0 0.8 79 chr2L 18791069 intron ham - chr2L 18791108 intron ham - chr2L 18791148 intron ham - chr2L_8_18790001 chr2L_18790001 RAL-738 422 chr2L 18812557 18812590 chr2L 18812820 18812853 16 261 2.0 5.5 3.8 3.3 296 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812705 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_16_18810001 chr2L_18810001 RAL-738 423 chr2L 18816838 18816869 chr2L 18817043 18817074 18 206 44.0 39.0 41.5 0.4 236 chr2L 18816838 intergenic not near genes chr2L 18816956 intergenic not near genes chr2L 18817074 intergenic not near genes chr2L_18_18815001 chr2L_18815001 RAL-738 424 chr2L 18883432 18883439 chr2L 18883532 18883539 4 100 8.5 4.5 6.5 0.5 107 chr2L 18883432 intergenic not near genes chr2L 18883486 intergenic not near genes chr2L 18883539 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-738 425 chr2L 18888201 18888214 chr2L 18888543 18888576 6 356 5.5 7.5 6.5 0.8 375 chr2L 18888201 intergenic not near genes chr2L 18888388 intergenic not near genes chr2L 18888576 intergenic not near genes chr2L_6_18885001 chr2L_18885001 RAL-738 426 chr2L 18902627 18902647 chr2L 18902908 18902928 5 281 3.5 1.5 2.5 1.4 301 chr2L 18902627 intergenic not near genes chr2L 18902778 intergenic not near genes chr2L 18902928 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-738 427 chr2L 18926578 18926593 chr2L 18926685 18926700 4 107 3.0 6.0 4.5 0.7 122 chr2L 18926578 intron ssp3 - chr2L 18926639 intron ssp3 - chr2L 18926700 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-738 428 chr2L 18991223 18991253 chr2L 18998858 18998891 4 7636 29.5 24.0 26.8 0.1 7668 chr2L 18991223 exon CG15169 + chr2L 18995057 intron CG10650 - chr2L 18998891 intron CG31792 + chr2L_4_18995001 chr2L_18995001 RAL-738 429 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744195 16.0 29.5 22.8 0.2 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-738 430 chr2L 19147373 19147399 chr2L 19154407 19154431 297 10 7029 4.0 6.0 5.0 1.7 7058 chr2L 19147373 intron brat + chr2L 19150902 intron brat + chr2L 19154431 intron brat + chr2L_10_19150001 chr2L_19150001 RAL-738 431 chr2L 19159039 19159070 chr2L 19159160 19159186 8 119 8.5 13.0 10.8 0.7 147 chr2L 19159039 intron,3` UTR brat +,CR44977 - chr2L 19159112 intron,3` UTR brat +,CR44977 - chr2L 19159186 intron,3` UTR brat +,CR44977 - chr2L_8_19155001 chr2L_19155001 RAL-738 432 chr2L 19217566 19217586 chr2L 19217646 19217666 9 80 12.5 8.5 10.5 0.8 100 chr2L 19217566 5` UTR CR44189 + chr2L 19217616 5` UTR CR44189 + chr2L 19217666 5` UTR CR44189 + chr2L_9_19215001 chr2L_19215001 RAL-738 433 chr2L 19237303 19237339 chr2L 19237403 19237430 13 94 4.5 6.5 5.5 2.0 127 chr2L 19237303 intergenic not near genes chr2L 19237366 intergenic not near genes chr2L 19237430 intergenic not near genes chr2L_13_19235001 chr2L_19235001 RAL-738 434 chr2L 19316212 19316228 chr2L 19316270 19316301 15 71 2.5 2.0 2.2 4.7 89 chr2L 19316212 intergenic not near genes chr2L 19316256 intergenic not near genes chr2L 19316301 intergenic not near genes chr2L_15_19315001 chr2L_19315001 RAL-738 435 chr2L 19329692 19329713 chr2L 19329785 19329798 8 89 6.5 5.0 5.8 1.2 106 chr2L 19329692 intergenic not near genes chr2L 19329745 intergenic not near genes chr2L 19329798 intergenic not near genes chr2L_8_19325001 chr2L_19325001 RAL-738 436 chr2L 19345012 19345043 chr2L 19357221 19357252 blood 14 12206 8.0 3.0 5.5 2.2 12240 chr2L 19345012 intron dnt - chr2L 19351132 intron dnt - chr2L 19357252 intron dnt - chr2L_14_19350001 chr2L_19350001 RAL-738 437 chr2L 19357546 19357552 chr2L 19357636 19357642 5 89 10.0 7.0 8.5 0.5 96 chr2L 19357546 intron dnt - chr2L 19357594 intron dnt - chr2L 19357642 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-738 438 chr2L 19357553 19357565 chr2L 19357635 19357655 9 89 5.5 5.5 5.5 1.4 102 chr2L 19357553 intron dnt - chr2L 19357604 intron dnt - chr2L 19357655 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-738 439 chr2L 19389665 19389692 chr2L 19389740 19389768 5 76 15.0 18.5 16.8 0.3 103 chr2L 19389665 intron CG17549 - chr2L 19389716 intron CG17549 - chr2L 19389768 intron CG17549 - chr2L_5_19385001 chr2L_19385001 RAL-738 440 chr2L 19405620 19405642 chr2L 19405708 19405732 9 90 3.0 2.0 2.5 2.6 112 chr2L 19405620 intron Pax - chr2L 19405676 intron Pax - chr2L 19405732 intron Pax - chr2L_9_19405001 chr2L_19405001 RAL-738 441 chr2L 19466829 19466856 chr2L 19466908 19466935 6 78 4.5 6.0 5.2 1.0 106 chr2L 19466829 3` UTR tj + chr2L 19466882 3` UTR tj + chr2L 19466935 3` UTR tj + chr2L_6_19465001 chr2L_19465001 RAL-738 442 chr2L 19559407 19559417 chr2L 19559458 19559493 10 71 0.0 0.5 0.2 8.3 86 chr2L 19559407 exon Tep5 + chr2L 19559450 exon Tep5 + chr2L 19559493 exon Tep5 + chr2L_10_19555001 chr2L_19555001 RAL-738 443 chr2L 19560003 19560029 chr2L 19560256 19560281 7 251 5.5 6.5 6.0 1.0 278 chr2L 19560003 exon Tep5 + chr2L 19560142 exon Tep5 + chr2L 19560281 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-738 444 chr2L 19560837 19560860 chr2L 19560917 19560940 13 80 9.5 4.0 6.8 1.7 103 chr2L 19560837 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560940 exon Tep5 + chr2L_13_19560001 chr2L_19560001 RAL-738 445 chr2L 19561344 19561364 chr2L 19561485 19561504 13 140 4.5 11.0 7.8 1.5 160 chr2L 19561344 exon Tep5 + chr2L 19561424 exon Tep5 + chr2L 19561504 exon Tep5 + chr2L_13_19560001 chr2L_19560001 RAL-738 446 chr2L 19562533 19562543 chr2L 19562609 19562618 7 76 21.0 9.0 15.0 0.4 85 chr2L 19562533 intron Tep5 + chr2L 19562576 intron Tep5 + chr2L 19562618 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-738 447 chr2L 19562544 19562562 chr2L 19562608 19562625 10 70 15.0 9.0 12.0 0.8 81 chr2L 19562544 intron Tep5 + chr2L 19562584 intron Tep5 + chr2L 19562625 intron Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-738 448 chr2L 19620093 19620102 chr2L 19621082 19621091 jockey 4 988 17.0 10.5 13.8 0.3 998 chr2L 19620093 intron Lar + chr2L 19620592 intron Lar + chr2L 19621091 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-738 449 chr2L 19620104 19620130 chr2L 19621080 19621119 jockey 14 979 7.5 8.0 7.8 1.6 1015 chr2L 19620104 intron Lar + chr2L 19620612 intron Lar + chr2L 19621119 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-738 450 chr2L 19652570 19652599 chr2L 19674006 19674035 opus 11 21434 6.5 3.0 4.8 1.9 21465 chr2L 19652570 intron Lar + chr2L 19663302 intron Lar + chr2L 19674035 intron Lar + chr2L_11_19660001 chr2L_19660001 RAL-738 451 chr2L 19703535 19703570 chr2L 19712671 19712706 roo 17 9134 5.0 4.0 4.5 3.1 9171 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712706 intron Lar + chr2L_17_19705001 chr2L_19705001 RAL-738 452 chr2L 19762814 19762819 chr2L 19763056 19763061 pogo 5 242 10.0 5.5 7.8 0.6 247 chr2L 19762814 5` UTR fbp - chr2L 19762938 intron fbp - chr2L 19763061 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-738 453 chr2L 19762823 19762840 chr2L 19763053 19763056 pogo 10 233 3.0 5.5 4.2 1.9 233 chr2L 19762823 intron fbp - chr2L 19762940 intron fbp - chr2L 19763056 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-738 454 chr2L 19824419 19824436 chr2L 19824502 19824517 7 83 3.0 7.0 5.0 1.2 98 chr2L 19824419 intron sick + chr2L 19824468 intron sick + chr2L 19824517 intron sick + chr2L_7_19820001 chr2L_19820001 RAL-738 455 chr2L 19837275 19837310 chr2L 19837355 19837390 19 78 4.0 6.0 5.0 3.2 115 chr2L 19837275 intron sick + chr2L 19837332 intron sick + chr2L 19837390 intron sick + chr2L_19_19835001 chr2L_19835001 RAL-738 456 chr2L 19911290 19911322 chr2L 19911378 19911388 18 84 4.0 6.0 5.0 3.0 98 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911339 intron,3` UTR sick +,CR43097 - chr2L 19911388 intron,3` UTR sick +,CR43097 - chr2L_18_19910001 chr2L_19910001 RAL-738 457 chr2L 20005871 20005894 chr2L 20010947 20010960 flea 8 5074 5.0 2.5 3.8 1.7 5089 chr2L 20005871 intron CG43861 - chr2L 20008416 intron CG43861 - chr2L 20010960 intron CG43861 - chr2L_8_20005001 chr2L_20005001 RAL-738 458 chr2L 20022090 20022103 chr2L 20022203 20022204 5 111 5.0 6.0 5.5 0.8 114 chr2L 20022090 intergenic not near genes chr2L 20022147 intergenic not near genes chr2L 20022204 intergenic not near genes chr2L_5_20020001 chr2L_20020001 RAL-738 459 chr2L 20122637 20122646 chr2L 20122727 20122736 5 90 4.5 4.0 4.2 1.0 99 chr2L 20122637 intergenic not near genes chr2L 20122686 intergenic not near genes chr2L 20122736 intergenic not near genes chr2L_5_20120001 chr2L_20120001 RAL-738 460 chr2L 20236523 20236540 chr2L 20236584 20236616 9 74 7.0 6.0 6.5 1.2 93 chr2L 20236523 intergenic not near genes chr2L 20236570 intergenic not near genes chr2L 20236616 intergenic not near genes chr2L_9_20235001 chr2L_20235001 RAL-738 461 chr2L 20272117 20272124 chr2L 20282828 20282835 copia 4 10711 8.5 9.0 8.8 0.4 10718 chr2L 20272117 intergenic not near genes chr2L 20277476 intergenic not near genes chr2L 20282835 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-738 462 chr2L 20272125 20272138 chr2L 20282827 20282849 copia 7 10707 5.5 9.0 7.2 0.9 10724 chr2L 20272125 intergenic not near genes chr2L 20277487 intergenic not near genes chr2L 20282849 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-738 463 chr2L 20296508 20296533 chr2L 20296589 20296613 10 80 2.5 4.0 3.2 2.4 105 chr2L 20296508 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296613 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-738 464 chr2L 20299424 20299439 chr2L 20299536 20299544 6 114 5.5 10.0 7.8 0.7 120 chr2L 20299424 intergenic not near genes chr2L 20299484 intergenic not near genes chr2L 20299544 intergenic not near genes chr2L_6_20295001 chr2L_20295001 RAL-738 465 chr2L 20300008 20300021 chr2L 20300091 20300094 5 83 11.0 10.5 10.8 0.4 86 chr2L 20300008 intergenic not near genes chr2L 20300051 intergenic not near genes chr2L 20300094 intergenic not near genes chr2L_5_20300001 chr2L_20300001 RAL-738 466 chr2L 20303160 20303190 chr2L 20310628 20310658 blood 13 7468 0.5 5.5 3.0 3.2 7498 chr2L 20303160 intergenic not near genes chr2L 20306909 intergenic not near genes chr2L 20310658 intergenic not near genes chr2L_13_20305001 chr2L_20305001 RAL-738 467 chr2L 20310881 20310913 chr2L 20310961 20310992 8 80 0.0 7.0 3.5 1.8 111 chr2L 20310881 intergenic spir + chr2L 20310936 intergenic spir + chr2L 20310992 intergenic spir + chr2L_8_20310001 chr2L_20310001 RAL-738 468 chr2L 20370869 20370902 chr2L 20371069 20371102 21 198 5.5 8.0 6.8 2.7 233 chr2L 20370869 intergenic not near genes chr2L 20370986 intergenic not near genes chr2L 20371102 intergenic not near genes chr2L_21_20370001 chr2L_20370001 RAL-738 469 chr2L 20372223 20372258 chr2L 20372473 20372487 pogo 4 240 0.0 8.5 4.2 0.8 264 chr2L 20372223 intergenic Ugt37a1 - chr2L 20372355 intergenic Ugt37a1 - chr2L 20372487 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-738 470 chr2L 20372852 20372879 chr2L 20372929 20372939 10 74 5.5 6.5 6.0 1.4 87 chr2L 20372852 exon Ugt37a1 - chr2L 20372896 exon Ugt37a1 - chr2L 20372939 exon Ugt37a1 - chr2L_10_20370001 chr2L_20370001 RAL-738 471 chr2L 20424056 20424076 chr2L 20424140 20424147 10 78 8.0 11.0 9.5 1.0 91 chr2L 20424056 intron CG15130 - chr2L 20424102 intron CG15130 - chr2L 20424147 intron CG15130 - chr2L_10_20420001 chr2L_20420001 RAL-738 472 chr2L 20468378 20468398 chr2L 20468483 20468503 INE-1 6 104 6.5 8.5 7.5 0.7 125 chr2L 20468378 intron CR44980 - chr2L 20468440 intron CR44980 - chr2L 20468503 intron CR44980 - chr2L_6_20465001 chr2L_20465001 RAL-738 473 chr2L 20498689 20498708 chr2L 20498788 20498807 9 97 3.0 9.5 6.2 1.2 118 chr2L 20498689 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_9_20495001 chr2L_20495001 RAL-738 474 chr2L 20568663 20568681 chr2L 20569053 20569071 X-element 12 389 5.0 2.0 3.5 2.7 408 chr2L 20568663 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_12_20565001 chr2L_20565001 RAL-738 475 chr2L 20576217 20576249 chr2L 20583685 20583717 blood 12 7467 6.5 3.0 4.8 2.1 7500 chr2L 20576217 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_12_20575001 chr2L_20575001 RAL-738 476 chr2L 20601792 20601811 chr2L 20601869 20601889 7 78 6.0 5.5 5.8 1.0 97 chr2L 20601792 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601889 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-738 477 chr2L 20602734 20602742 chr2L 20602822 20602830 4 88 1.5 4.0 2.8 1.1 96 chr2L 20602734 intron CR44909 - chr2L 20602782 intron CR44909 - chr2L 20602830 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-738 478 chr2L 20609024 20609043 chr2L 20609256 20609275 4 232 31.5 19.5 25.5 0.2 251 chr2L 20609024 intron CR44909 - chr2L 20609150 intron CR44909 - chr2L 20609275 intron CR44909 - chr2L_4_20605001 chr2L_20605001 RAL-738 479 chr2L 20623925 20623943 chr2L 20624004 20624022 5 79 9.5 9.0 9.2 0.5 97 chr2L 20623925 intron CR44909 - chr2L 20623974 intron CR44909 - chr2L 20624022 intron CR44909 - chr2L_5_20620001 chr2L_20620001 RAL-738 480 chr2L 20648181 20648184 chr2L 20648359 20648362 6 178 45.0 1.5 23.2 0.2 181 chr2L 20648181 intron Uhg3 + chr2L 20648272 5` UTR Uhg3 + chr2L 20648362 5` UTR Uhg3 + chr2L_6_20645001 chr2L_20645001 RAL-738 481 chr2L 20715571 20715579 chr2L 20715649 20715650 4 76 10.5 15.5 13.0 0.3 79 chr2L 20715571 intergenic not near genes chr2L 20715610 intergenic not near genes chr2L 20715650 intergenic not near genes chr2L_4_20715001 chr2L_20715001 RAL-738 482 chr2L 20818515 20818521 chr2L 20818596 20818602 8 80 9.5 8.5 9.0 0.8 87 chr2L 20818515 exon CheB38a - chr2L 20818558 intergenic CheB38a - chr2L 20818602 intergenic CheB38a - chr2L_8_20815001 chr2L_20815001 RAL-738 483 chr2L 20818522 20818532 chr2L 20818591 20818607 6 72 10.0 7.0 8.5 0.6 85 chr2L 20818522 exon CheB38a - chr2L 20818564 intergenic CheB38a - chr2L 20818607 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-738 484 chr2L 20835810 20835841 chr2L 20836526 20836548 Quasimodo 8 716 1.5 4.5 3.0 2.0 738 chr2L 20835810 5` UTR Oseg5 - chr2L 20836179 intergenic Oseg5 -,Spn38F - chr2L 20836548 intergenic Spn38F - chr2L_8_20835001 chr2L_20835001 RAL-738 485 chr2L 20901479 20901488 chr2L 20902620 20902652 1360 10 1158 2.0 5.5 3.8 2.1 1173 chr2L 20901479 intron,intron CG43739 -,sky - chr2L 20902066 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_10_20900001 chr2L_20900001 RAL-738 486 chr2L 20946946 20946962 chr2L 20947033 20947035 5 84 6.0 7.0 6.5 0.7 89 chr2L 20946946 intergenic CR44606 - chr2L 20946990 intergenic CR44606 - chr2L 20947035 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-738 487 chr2L 20958047 20958073 chr2L 20958348 20958374 8 300 7.5 9.0 8.2 0.9 327 chr2L 20958047 intergenic not near genes chr2L 20958210 intergenic not near genes chr2L 20958374 intergenic not near genes chr2L_8_20955001 chr2L_20955001 RAL-738 488 chr2L 20976642 20976680 chr2L 20981457 20981475 X-element 7 4804 3.5 6.5 5.0 1.2 4833 chr2L 20976642 intron CG42238 - chr2L 20979058 intron CG42238 - chr2L 20981475 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-738 489 chr2L 21020272 21020309 chr2L 21023949 21023984 NOF 15 3673 4.5 4.0 4.2 2.9 3712 chr2L 21020272 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_15_21020001 chr2L_21020001 RAL-738 490 chr2L 21041135 21041161 chr2L 21049396 21049421 Tirant 5 8260 3.5 3.5 3.5 1.1 8286 chr2L 21041135 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049421 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-738 491 chr2L 21041163 21041166 chr2L 21049395 21049421 Tirant 6 8249 3.0 3.5 3.2 1.4 8258 chr2L 21041163 intron CG42238 - chr2L 21045292 intron CG42238 - chr2L 21049421 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-738 492 chr2L 21106019 21106034 chr2L 21106103 21106118 4 84 12.5 10.0 11.2 0.3 99 chr2L 21106019 intron Nhe2 + chr2L 21106068 intron Nhe2 + chr2L 21106118 intron Nhe2 + chr2L_4_21105001 chr2L_21105001 RAL-738 493 chr2L 21110651 21110667 chr2L 21110736 21110752 9 85 7.0 5.5 6.2 1.2 101 chr2L 21110651 intron Nhe2 + chr2L 21110702 intron Nhe2 + chr2L 21110752 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-738 494 chr2L 21118249 21118275 chr2L 21118420 21118438 10 170 3.5 6.5 5.0 1.7 189 chr2L 21118249 intron Nhe2 + chr2L 21118344 intron Nhe2 + chr2L 21118438 intron Nhe2 + chr2L_10_21115001 chr2L_21115001 RAL-738 495 chr2L 21199228 21199259 chr2L 21199305 21199336 12 75 8.0 7.5 7.8 1.4 108 chr2L 21199228 intergenic CG31624 -,Ret - chr2L 21199282 3` UTR CG31624 - chr2L 21199336 3` UTR CG31624 - chr2L_12_21195001 chr2L_21195001 RAL-738 496 chr2L 21218987 21219003 chr2L 21219260 21219277 14 273 6.5 6.5 6.5 1.9 290 chr2L 21218987 intron Atg18b - chr2L 21219132 intron Atg18b - chr2L 21219277 intron Atg18b - chr2L_14_21215001 chr2L_21215001 RAL-738 497 chr2L 21246508 21246541 chr2L 21246603 21246614 16 89 3.0 0.5 1.8 5.7 106 chr2L 21246508 intron Hr39 + chr2L 21246561 intron Hr39 + chr2L 21246614 intron Hr39 + chr2L_16_21245001 chr2L_21245001 RAL-738 498 chr2L 21355607 21355636 chr2L 21355752 21355777 8 144 4.0 3.5 3.8 1.7 170 chr2L 21355607 intron Tsp39D + chr2L 21355692 intron Tsp39D + chr2L 21355777 intron Tsp39D + chr2L_8_21355001 chr2L_21355001 RAL-738 499 chr2L 21597037 21597059 chr2L 21604781 21604802 roo 5 7743 0.0 5.0 2.5 1.4 7765 chr2L 21597037 intergenic not near genes chr2L 21600920 intergenic not near genes chr2L 21604802 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-738 500 chr2L 21653190 21653224 chr2L 21656494 21656528 invader4 12 3304 5.5 6.5 6.0 1.7 3338 chr2L 21653190 intergenic not near genes chr2L 21654859 intergenic not near genes chr2L 21656528 intergenic not near genes chr2L_12_21650001 chr2L_21650001 RAL-738 501 chr2L 21665657 21665679 chr2L 21665740 21665762 7 81 3.5 5.5 4.5 1.3 105 chr2L 21665657 intron CG2225 - chr2L 21665710 intron CG2225 - chr2L 21665762 intron CG2225 - chr2L_7_21665001 chr2L_21665001 RAL-738 502 chr2L 21691828 21691854 chr2L 21698295 21698324 Burdock 7 6465 4.5 0.5 2.5 2.0 6496 chr2L 21691828 intron CG31619 + chr2L 21695076 intron CG31619 + chr2L 21698324 intron CG31619 + chr2L_7_21695001 chr2L_21695001 RAL-738 503 chr2L 21722389 21722418 chr2L 21722476 21722504 9 86 2.0 4.5 3.2 2.1 115 chr2L 21722389 intron CG31619 + chr2L 21722446 intron CG31619 + chr2L 21722504 intron CG31619 + chr2L_9_21720001 chr2L_21720001 RAL-738 504 chr2L 21750084 21750106 chr2L 21750317 21750339 9 233 3.5 1.5 2.5 2.6 255 chr2L 21750084 intron step - chr2L 21750212 intron step - chr2L 21750339 intron step - chr2L_9_21750001 chr2L_21750001 RAL-738 505 chr2L 21771231 21771260 chr2L 21771338 21771366 12 106 7.5 9.0 8.2 1.3 135 chr2L 21771231 intron CG31612 - chr2L 21771298 intron CG31612 - chr2L 21771366 intron CG31612 - chr2L_12_21770001 chr2L_21770001 RAL-738 506 chr2L 21771985 21772012 chr2L 21772064 21772091 8 77 5.0 5.5 5.2 1.3 106 chr2L 21771985 intron CG31612 - chr2L 21772038 intron CG31612 - chr2L 21772091 intron CG31612 - chr2L_8_21770001 chr2L_21770001 RAL-738 507 chr2L 21819330 21819361 chr2L 21819418 21819428 8 74 2.0 8.5 5.2 1.3 98 chr2L 21819330 intergenic CR44786 + chr2L 21819379 intergenic CR44786 + chr2L 21819428 intergenic CR44786 + chr2L_8_21815001 chr2L_21815001 RAL-738 508 chr2L 21852374 21852407 chr2L 21852689 21852722 5 315 1.0 3.0 2.0 1.7 348 chr2L 21852374 intergenic not near genes chr2L 21852548 intergenic not near genes chr2L 21852722 intergenic not near genes chr2L_5_21850001 chr2L_21850001 RAL-738 509 chr2L 21855477 21855505 chr2L 21855563 21855591 6 86 6.0 3.5 4.8 1.0 114 chr2L 21855477 intron CR44917 + chr2L 21855534 intron CR44917 + chr2L 21855591 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-738 510 chr2L 21859316 21859352 chr2L 21859396 21859432 16 74 14.0 10.5 12.2 1.2 116 chr2L 21859316 intron CR44917 + chr2L 21859374 intron CR44917 + chr2L 21859432 intron CR44917 + chr2L_16_21855001 chr2L_21855001 RAL-738 511 chr2L 21902190 21902217 chr2L 21902304 21902332 10 112 9.5 5.0 7.2 1.2 142 chr2L 21902190 intergenic not near genes chr2L 21902261 intergenic not near genes chr2L 21902332 intergenic not near genes chr2L_10_21900001 chr2L_21900001 RAL-738 512 chr2L 21950925 21950956 chr2L 21951341 21951359 12 414 11.0 14.0 12.5 0.9 434 chr2L 21950925 5` UTR CR45703 + chr2L 21951142 5` UTR CR45703 + chr2L 21951359 intergenic CR45703 + chr2L_12_21950001 chr2L_21950001 RAL-738 513 chr2L 21950982 21950998 chr2L 21951342 21951362 11 353 18.0 14.0 16.0 0.6 380 chr2L 21950982 5` UTR CR45703 + chr2L 21951172 intergenic CR45703 + chr2L 21951362 intergenic CR45703 + chr2L_11_21950001 chr2L_21950001 RAL-738 514 chr2L 21981687 21981715 chr2L 21990852 21990867 roo 19 9162 3.5 8.5 6.0 2.7 9180 chr2L 21981687 exon CG2528 - chr2L 21986277 intron CG2528 - chr2L 21990867 exon CG2528 - chr2L_19_21985001 chr2L_21985001 RAL-738 515 chr2L 22164964 22164989 chr2L 22165093 22165118 5 129 2.0 4.5 3.2 1.2 154 chr2L 22164964 3` UTR CG42748 + chr2L 22165041 3` UTR CG42748 + chr2L 22165118 3` UTR CG42748 + chr2L_5_22165001 chr2L_22165001 RAL-738 516 chr2L 22165515 22165547 chr2L 22165600 22165632 10 85 6.5 3.0 4.8 1.7 117 chr2L 22165515 3` UTR CG42748 + chr2L 22165574 3` UTR CG42748 + chr2L 22165632 3` UTR CG42748 + chr2L_10_22165001 chr2L_22165001 RAL-738 517 chr2L 22212137 22212163 chr2L 22212684 22212709 11 547 2.0 4.0 3.0 2.8 572 chr2L 22212137 intron Ir40a - chr2L 22212423 intron Ir40a - chr2L 22212709 intron Ir40a - chr2L_11_22210001 chr2L_22210001 RAL-738 518 chr2L 22581971 22581999 chr2L 22583760 22583788 S-element 10 1789 3.5 4.0 3.8 2.1 1817 chr2L 22581971 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583788 intron CG17494 + chr2L_10_22580001 chr2L_22580001 RAL-738 519 chr2L 22776420 22776449 chr2L 22778209 22778238 S-element 12 1789 5.5 4.0 4.8 2.1 1818 chr2L 22776420 intergenic not near genes chr2L 22777329 intergenic not near genes chr2L 22778238 intergenic not near genes chr2L_12_22775001 chr2L_22775001 RAL-738 520 chr2L 22983959 22983972 chr2L 22984035 22984038 4 74 4.5 6.0 5.2 0.6 79 chr2L 22983959 intron cta + chr2L 22983998 intron cta + chr2L 22984038 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-738 521 chr2L 171940 171940 chr2L 23165295 23165296 4 22993354 20.0 12.5 16.2 0.2 22993356 chr2L 171940 intron spen + chr2L 11668618 intergenic not near genes chr2L 23165296 intron CG12567 - chr2L_4_11665001 chr2L_11665001 RAL-738 522 chr2L 23241845 23241855 chr2L 23241925 23241931 4 79 18.0 4.5 11.2 0.3 86 chr2L 23241845 intergenic not near genes chr2L 23241888 intergenic not near genes chr2L 23241931 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-738 523 chr2R 529322 529355 chr2R 537946 537949 Max-element 10 8620 3.5 4.0 3.8 2.1 8627 chr2R 529322 intron CG40378 + chr2R 533636 intron CG40378 + chr2R 537949 intron CG40378 + chr2R_10_530001 chr2R_530001 RAL-738 524 chr2R 1082376 1082385 chr2R 1087127 1087161 Doc 5 4771 3.0 5.0 4.0 1.0 4785 chr2R 1082376 intron rl + chr2R 1084768 intron rl + chr2R 1087161 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-738 525 chr2R 1320201 1320201 chr2R 11463554 11463556 invader1 6 10143355 7.0 18.0 12.5 0.4 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_6_6390001 chr2R_6390001 RAL-738 526 chr2R 2498987 2499002 chr2R 2508134 2508149 roo 5 9147 6.5 4.5 5.5 0.8 9162 chr2R 2498987 intron MFS17 - chr2R 2503568 intron MFS17 - chr2R 2508149 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-738 527 chr2R 2591545 2591560 chr2R 2594221 2594221 roo 6 2674 29.0 14.5 21.8 0.3 2676 chr2R 2591545 intergenic not near genes chr2R 2592883 intergenic not near genes chr2R 2594221 intergenic not near genes chr2R_6_2590001 chr2R_2590001 RAL-738 528 chr2R 3144092 3144104 chr2R 3393366 3393382 Doc 4 249276 19.5 20.5 20.0 0.2 249290 chr2R 3144092 intron CG42596 + chr2R 3268737 intergenic not near genes chr2R 3393382 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-738 529 chr2R 3291929 3292100 chr2R 3915098 3915261 8 623161 8.5 41.5 25.0 0.3 623332 chr2R 3291929 intergenic not near genes chr2R 3603595 intergenic not near genes chr2R 3915261 intron uex - chr2R_8_3600001 chr2R_3600001 RAL-738 530 chr2R 3293752 3293765 chr2R 3293830 3293843 4 76 2.0 2.0 2.0 1.3 91 chr2R 3293752 intergenic not near genes chr2R 3293798 intergenic not near genes chr2R 3293843 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-738 531 chr2R 3291928 3291954 chr2R 3914992 3915031 4 623078 13.0 33.5 23.2 0.2 623103 chr2R 3291928 intergenic not near genes chr2R 3603480 intergenic not near genes chr2R 3915031 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-738 532 chr2R 3927686 3927718 chr2R 3927783 3927814 10 95 4.5 4.0 4.2 1.9 128 chr2R 3927686 intron uex - chr2R 3927750 intron uex - chr2R 3927814 intron uex - chr2R_10_3925001 chr2R_3925001 RAL-738 533 chr2R 4015313 4015337 chr2R 4015486 4015510 4 173 14.5 23.5 19.0 0.2 197 chr2R 4015313 intron Haspin + chr2R 4015412 intron Haspin + chr2R 4015510 intron Haspin + chr2R_4_4015001 chr2R_4015001 RAL-738 534 chr2R 4387301 4387310 chr2R 4387447 4387461 5 150 7.5 1.0 4.2 1.0 160 chr2R 4387301 intron Gprk1 - chr2R 4387381 intron Gprk1 - chr2R 4387461 intron Gprk1 - chr2R_5_4385001 chr2R_4385001 RAL-738 535 chr2R 4604555 4604578 chr2R 4604631 4604657 13 76 6.5 8.0 7.2 1.6 102 chr2R 4604555 intron p120ctn + chr2R 4604606 intron p120ctn + chr2R 4604657 intron p120ctn + chr2R_13_4600001 chr2R_4600001 RAL-738 536 chr2R 4622961 4622988 chr2R 4624110 4624147 1360 12 1154 3.0 5.0 4.0 2.4 1186 chr2R 4622961 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_12_4620001 chr2R_4620001 RAL-738 537 chr2R 4624642 4624674 chr2R 4626547 4626579 Bica 14 1902 2.0 7.0 4.5 2.5 1937 chr2R 4624642 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626579 intergenic not near genes chr2R_14_4625001 chr2R_4625001 RAL-738 538 chr2R 4634155 4634181 chr2R 4634234 4634237 13 72 6.0 7.5 6.8 1.7 82 chr2R 4634155 intergenic not near genes chr2R 4634196 intergenic not near genes chr2R 4634237 intergenic not near genes chr2R_13_4630001 chr2R_4630001 RAL-738 539 chr2R 5061561 5061562 chr2R 5600386 5600408 4 538837 5.0 11.5 8.2 0.4 538847 chr2R 5061561 intergenic not near genes chr2R 5330984 intergenic not near genes chr2R 5600408 intergenic not near genes chr2R_4_5330001 chr2R_5330001 RAL-738 540 chr2R 5209791 5209810 chr2R 5210312 5210343 14 525 2.0 4.5 3.2 3.3 552 chr2R 5209791 intron Nipped-A - chr2R 5210067 intron Nipped-A - chr2R 5210343 intron Nipped-A - chr2R_14_5210001 chr2R_5210001 RAL-738 541 chr2R 5303489 5303517 chr2R 5303577 5303605 8 86 27.0 25.5 26.2 0.3 116 chr2R 5303489 intergenic not near genes chr2R 5303547 intergenic not near genes chr2R 5303605 intergenic not near genes chr2R_8_5300001 chr2R_5300001 RAL-738 542 chr2R 5342828 5342858 chr2R 5342925 5342954 6 97 5.0 9.0 7.0 0.8 126 chr2R 5342828 intergenic not near genes chr2R 5342891 intergenic not near genes chr2R 5342954 intergenic not near genes chr2R_6_5340001 chr2R_5340001 RAL-738 543 chr2R 5363489 5363522 chr2R 5363566 5363582 12 76 2.5 6.0 4.2 2.3 93 chr2R 5363489 5` UTR CR42646 + chr2R 5363536 intron CR42646 + chr2R 5363582 intron CR42646 + chr2R_12_5360001 chr2R_5360001 RAL-738 544 chr2R 5417996 5418027 chr2R 5420628 5420659 Burdock 15 2630 1.5 6.0 3.8 3.1 2663 chr2R 5417996 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_15_5415001 chr2R_5415001 RAL-738 545 chr2R 5455777 5455804 chr2R 5455855 5455881 11 76 10.0 10.5 10.2 1.0 104 chr2R 5455777 3` UTR laccase2 + chr2R 5455829 3` UTR laccase2 + chr2R 5455881 3` UTR laccase2 + chr2R_11_5455001 chr2R_5455001 RAL-738 546 chr2R 5463244 5463278 chr2R 5468710 5468725 4 5456 33.0 20.0 26.5 0.1 5481 chr2R 5463244 intergenic not near genes chr2R 5465984 intergenic not near genes chr2R 5468725 intron CG30440 - chr2R_4_5465001 chr2R_5465001 RAL-738 547 chr2R 5472370 5472393 chr2R 5472461 5472488 7 88 4.5 3.0 3.8 1.5 118 chr2R 5472370 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-738 548 chr2R 5491716 5491749 chr2R 5491852 5491889 25 136 11.0 7.0 9.0 2.5 173 chr2R 5491716 intron CG30440 - chr2R 5491802 intron CG30440 - chr2R 5491889 intron CG30440 - chr2R_25_5490001 chr2R_5490001 RAL-738 549 chr2R 5509520 5509543 chr2R 5509615 5509639 9 94 2.5 6.5 4.5 1.6 119 chr2R 5509520 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509639 intron CG30438 + chr2R_9_5505001 chr2R_5505001 RAL-738 550 chr2R 5543198 5543216 chr2R 5547282 5547300 invader1 7 4084 0.0 5.5 2.8 1.8 4102 chr2R 5543198 intron CG30438 + chr2R 5545249 intron CG30438 + chr2R 5547300 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-738 551 chr2R 5581420 5581425 chr2R 5627603 5627617 4 46198 7.5 14.5 11.0 0.3 46197 chr2R 5581420 intergenic not near genes chr2R 5604518 intron Fis1 - chr2R 5627617 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-738 552 chr2R 5742839 5742862 chr2R 5742918 5742919 4 74 17.5 24.0 20.8 0.2 80 chr2R 5742839 intergenic not near genes chr2R 5742879 intergenic not near genes chr2R 5742919 intergenic not near genes chr2R_4_5740001 chr2R_5740001 RAL-738 553 chr2R 5750119 5750146 chr2R 5750450 5750451 6 320 12.0 1.5 6.8 0.8 332 chr2R 5750119 intergenic not near genes chr2R 5750285 intergenic not near genes chr2R 5750451 intergenic not near genes chr2R_6_5750001 chr2R_5750001 RAL-738 554 chr2R 5772547 5772550 chr2R 5772624 5772644 6 86 4.0 4.5 4.2 1.2 97 chr2R 5772547 3` UTR Gp210 + chr2R 5772596 3` UTR Gp210 + chr2R 5772644 3` UTR Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-738 555 chr2R 5772842 5772853 chr2R 5772924 5772935 5 82 9.0 9.0 9.0 0.5 93 chr2R 5772842 3` UTR Gp210 + chr2R 5772888 3` UTR Gp210 + chr2R 5772935 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-738 556 chr2R 5790465 5790496 chr2R 5790549 5790581 11 84 3.0 1.5 2.2 3.4 116 chr2R 5790465 intergenic not near genes chr2R 5790523 intergenic not near genes chr2R 5790581 intergenic not near genes chr2R_11_5790001 chr2R_5790001 RAL-738 557 chr2R 5840749 5840782 chr2R 5840832 5840859 12 80 4.5 5.5 5.0 2.0 110 chr2R 5840749 intron dpr12 + chr2R 5840804 intron dpr12 + chr2R 5840859 intron dpr12 + chr2R_12_5840001 chr2R_5840001 RAL-738 558 chr2R 5869279 5869305 chr2R 5874354 5874381 flea 10 5074 4.0 4.0 4.0 2.0 5102 chr2R 5869279 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874381 intergenic not near genes chr2R_10_5870001 chr2R_5870001 RAL-738 559 chr2R 5876883 5876905 chr2R 5876969 5876994 7 89 6.0 7.5 6.8 0.9 111 chr2R 5876883 intergenic not near genes chr2R 5876938 intergenic not near genes chr2R 5876994 intergenic not near genes chr2R_7_5875001 chr2R_5875001 RAL-738 560 chr2R 5878926 5878951 chr2R 5879006 5879019 5 78 4.0 7.0 5.5 0.8 93 chr2R 5878926 intergenic CG44438 - chr2R 5878972 intergenic CG44438 - chr2R 5879019 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-738 561 chr2R 5885365 5885376 chr2R 5885494 5885505 5 129 4.0 2.0 3.0 1.2 140 chr2R 5885365 5` UTR CR44125 + chr2R 5885435 5` UTR CR44125 + chr2R 5885505 5` UTR CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-738 562 chr2R 5902154 5902189 chr2R 5909713 5909740 17.6 11 7558 3.5 3.0 3.2 2.6 7586 chr2R 5902154 intron CG43366 + chr2R 5905947 intron CG43366 + chr2R 5909740 intron CG43366 + chr2R_11_5905001 chr2R_5905001 RAL-738 563 chr2R 5937528 5937552 chr2R 5937607 5937631 5 76 7.0 6.0 6.5 0.7 103 chr2R 5937528 5` UTR CR44126 + chr2R 5937580 5` UTR CR44126 + chr2R 5937631 5` UTR CR44126 + chr2R_5_5935001 chr2R_5935001 RAL-738 564 chr2R 6096730 6096750 chr2R 6101914 6101925 BS 4 5182 10.0 7.5 8.8 0.4 5195 chr2R 6096730 intron EcR - chr2R 6099328 intron EcR - chr2R 6101925 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-738 565 chr2R 6129324 6129357 chr2R 6129402 6129435 21 77 5.0 5.0 5.0 3.5 111 chr2R 6129324 intron EcR - chr2R 6129380 intron EcR - chr2R 6129435 intron EcR - chr2R_21_6125001 chr2R_6125001 RAL-738 566 chr2R 6161315 6161341 chr2R 6161394 6161420 8 77 9.5 11.5 10.5 0.7 105 chr2R 6161315 intron EcR - chr2R 6161368 intron EcR - chr2R 6161420 intron EcR - chr2R_8_6160001 chr2R_6160001 RAL-738 567 chr2R 6178121 6178139 chr2R 6178247 6178265 7 126 1.5 3.0 2.2 2.2 144 chr2R 6178121 intergenic not near genes chr2R 6178193 intergenic not near genes chr2R 6178265 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-738 568 chr2R 6194685 6194702 chr2R 6194768 6194785 10 81 9.0 5.0 7.0 1.2 100 chr2R 6194685 intron Ptr - chr2R 6194735 intron Ptr - chr2R 6194785 intron Ptr - chr2R_10_6190001 chr2R_6190001 RAL-738 569 chr2R 6438289 6438314 chr2R 6438588 6438596 4 290 16.5 0.5 8.5 0.4 307 chr2R 6438289 intergenic not near genes chr2R 6438442 intergenic not near genes chr2R 6438596 intergenic not near genes chr2R_4_6435001 chr2R_6435001 RAL-738 570 chr2R 6494528 6494555 chr2R 6499289 6499317 F-element 8 4762 0.5 4.0 2.2 2.5 4789 chr2R 6494528 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499317 intergenic not near genes chr2R_8_6495001 chr2R_6495001 RAL-738 571 chr2R 6530770 6530788 chr2R 6530850 6530868 9 80 2.5 3.5 3.0 2.2 98 chr2R 6530770 intron jing + chr2R 6530819 intron jing + chr2R 6530868 intron jing + chr2R_9_6530001 chr2R_6530001 RAL-738 572 chr2R 6579771 6579805 chr2R 6584857 6584891 flea 13 5086 1.5 2.0 1.8 4.6 5120 chr2R 6579771 intron jing + chr2R 6582331 intron jing + chr2R 6584891 intron jing + chr2R_13_6580001 chr2R_6580001 RAL-738 573 chr2R 6592223 6592251 chr2R 6592338 6592356 12 112 4.5 6.0 5.2 1.9 133 chr2R 6592223 intron jing + chr2R 6592290 intron jing + chr2R 6592356 intron jing + chr2R_12_6590001 chr2R_6590001 RAL-738 574 chr2R 6607656 6607688 chr2R 6607743 6607775 15 86 8.0 3.0 5.5 2.3 119 chr2R 6607656 intron jing + chr2R 6607716 intron jing + chr2R 6607775 intron jing + chr2R_15_6605001 chr2R_6605001 RAL-738 575 chr2R 6633201 6633230 chr2R 6633278 6633307 11 76 5.0 2.5 3.8 2.3 106 chr2R 6633201 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633307 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-738 576 chr2R 6699591 6699620 chr2R 6699676 6699705 9 85 6.0 3.0 4.5 1.6 114 chr2R 6699591 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699705 intergenic Rab2 + chr2R_9_6695001 chr2R_6695001 RAL-738 577 chr2R 7139948 7139955 chr2R 7141420 7141436 hopper2 4 1476 4.0 4.5 4.2 0.8 1488 chr2R 7139948 intergenic not near genes chr2R 7140692 intergenic not near genes chr2R 7141436 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-738 578 chr2R 7160561 7160585 chr2R 7160632 7160663 10 75 2.5 5.0 3.8 2.1 102 chr2R 7160561 intron pk + chr2R 7160612 intron pk + chr2R 7160663 intron pk + chr2R_10_7160001 chr2R_7160001 RAL-738 579 chr2R 7196567 7196596 chr2R 7201342 7201371 F-element 9 4775 6.5 2.0 4.2 1.7 4804 chr2R 7196567 intron pk + chr2R 7198969 intron pk + chr2R 7201371 intron pk + chr2R_9_7195001 chr2R_7195001 RAL-738 580 chr2R 7235819 7235821 chr2R 7240910 7240913 jockey 4 5092 14.5 8.0 11.2 0.3 5094 chr2R 7235819 intergenic not near genes chr2R 7238366 intergenic not near genes chr2R 7240913 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-738 581 chr2R 7235822 7235849 chr2R 7240906 7240933 jockey 10 5088 4.5 7.0 5.8 1.5 5111 chr2R 7235822 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240933 intergenic not near genes chr2R_10_7235001 chr2R_7235001 RAL-738 582 chr2R 7253547 7253569 chr2R 7253862 7253884 16 312 2.5 3.0 2.8 4.2 337 chr2R 7253547 intergenic not near genes chr2R 7253716 intergenic not near genes chr2R 7253884 intergenic not near genes chr2R_16_7250001 chr2R_7250001 RAL-738 583 chr2R 7328136 7328152 chr2R 7328241 7328263 6 109 4.5 4.5 4.5 1.1 127 chr2R 7328136 intron,intron Dscam1 -,CR45129 + chr2R 7328200 intron,intron Dscam1 -,CR45129 + chr2R 7328263 intron,intron Dscam1 -,CR45129 + chr2R_6_7325001 chr2R_7325001 RAL-738 584 chr2R 7363881 7363897 chr2R 7364045 7364053 7 163 8.0 5.5 6.8 0.9 172 chr2R 7363881 intron Dscam1 - chr2R 7363967 intron Dscam1 - chr2R 7364053 intron Dscam1 - chr2R_7_7360001 chr2R_7360001 RAL-738 585 chr2R 7417904 7418166 chr2R 7417990 7418234 14 80 4.5 7.5 6.0 2.0 330 chr2R 7417904 intergenic not near genes chr2R 7418069 intergenic not near genes chr2R 7418234 intergenic not near genes chr2R_14_7415001 chr2R_7415001 RAL-738 586 chr2R 7434896 7434916 chr2R 7439197 7439217 Juan 5 4301 4.0 6.5 5.2 0.8 4321 chr2R 7434896 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439217 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-738 587 chr2R 7459276 7459303 chr2R 7459364 7459391 12 86 6.0 0.5 3.2 2.9 115 chr2R 7459276 intergenic Inos -,CG11141 - chr2R 7459334 intergenic CG11141 -,Inos - chr2R 7459391 intergenic CG11141 - chr2R_12_7455001 chr2R_7455001 RAL-738 588 chr2R 7608407 7608436 chr2R 7613610 7613639 I-element 10 5201 6.5 4.5 5.5 1.5 5232 chr2R 7608407 intron CG1358 - chr2R 7611023 intron CG1358 - chr2R 7613639 intron CG1358 - chr2R_10_7610001 chr2R_7610001 RAL-738 589 chr2R 7692011 7692025 chr2R 7692092 7692106 5 81 2.5 3.5 3.0 1.2 95 chr2R 7692011 intron CG1399 - chr2R 7692058 intron CG1399 - chr2R 7692106 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-738 590 chr2R 7815670 7815705 chr2R 7822139 7822169 Burdock 17 6468 2.0 3.5 2.8 4.5 6499 chr2R 7815670 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822169 3` UTR cathD - chr2R_17_7815001 chr2R_7815001 RAL-738 591 chr2R 7869188 7869215 chr2R 7873974 7873990 Doc 10 4785 9.0 8.0 8.5 1.1 4802 chr2R 7869188 intron Dgk - chr2R 7871589 intron Dgk - chr2R 7873990 intron Dgk - chr2R_10_7870001 chr2R_7870001 RAL-738 592 chr2R 7942186 7942209 chr2R 7942277 7942300 8 88 3.0 5.0 4.0 1.6 114 chr2R 7942186 3` UTR CG14764 - chr2R 7942243 3` UTR CG14764 - chr2R 7942300 3` UTR CG14764 - chr2R_8_7940001 chr2R_7940001 RAL-738 593 chr2R 8076680 8076692 chr2R 8076760 8076772 10 80 13.0 4.5 8.8 1.0 92 chr2R 8076680 intron lig + chr2R 8076726 intron lig + chr2R 8076772 intron lig + chr2R_10_8075001 chr2R_8075001 RAL-738 594 chr2R 8076693 8076710 chr2R 8076757 8076786 9 75 7.0 4.0 5.5 1.4 93 chr2R 8076693 intron lig + chr2R 8076740 intron lig + chr2R 8076786 intron lig + chr2R_9_8075001 chr2R_8075001 RAL-738 595 chr2R 8152757 8152786 chr2R 8152882 8152911 5 123 2.0 3.0 2.5 1.4 154 chr2R 8152757 intron,intron Lpin -,kermit - chr2R 8152834 intron,intron Lpin -,kermit - chr2R 8152911 intron,intron Lpin -,kermit - chr2R_5_8150001 chr2R_8150001 RAL-738 596 chr2R 8236038 8236056 chr2R 8236119 8236122 8 78 5.5 4.5 5.0 1.3 84 chr2R 8236038 intergenic not near genes chr2R 8236080 intergenic not near genes chr2R 8236122 intergenic not near genes chr2R_8_8235001 chr2R_8235001 RAL-738 597 chr2R 8249568 8249594 chr2R 8249649 8249664 18 80 5.0 0.5 2.8 4.7 96 chr2R 8249568 5` UTR CG44439 - chr2R 8249616 intergenic CG44439 - chr2R 8249664 intergenic CG44439 - chr2R_18_8245001 chr2R_8245001 RAL-738 598 chr2R 8297429 8297455 chr2R 8297508 8297534 15 79 3.0 5.5 4.2 2.9 105 chr2R 8297429 intergenic not near genes chr2R 8297482 intergenic not near genes chr2R 8297534 intergenic not near genes chr2R_15_8295001 chr2R_8295001 RAL-738 599 chr2R 8330860 8330895 chr2R 8331346 8331370 roo 24 481 2.0 3.0 2.5 6.9 510 chr2R 8330860 intron pdm3 + chr2R 8331115 intron pdm3 + chr2R 8331370 intron pdm3 + chr2R_24_8330001 chr2R_8330001 RAL-738 600 chr2R 8368187 8368213 chr2R 8368265 8368293 7 77 5.0 4.0 4.5 1.3 106 chr2R 8368187 intron pdm3 + chr2R 8368240 intron pdm3 + chr2R 8368293 intron pdm3 + chr2R_7_8365001 chr2R_8365001 RAL-738 601 chr2R 8398217 8398244 chr2R 8402988 8402994 Doc 5 4772 2.5 8.0 5.2 0.8 4777 chr2R 8398217 intron CG2121 - chr2R 8400606 intron CG2121 - chr2R 8402994 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-738 602 chr2R 8403440 8403455 chr2R 8403523 8403538 5 83 3.5 5.0 4.2 1.0 98 chr2R 8403440 intron CG2121 - chr2R 8403489 intron CG2121 - chr2R 8403538 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-738 603 chr2R 8441263 8441298 chr2R 8441366 8441400 12 102 3.5 5.0 4.2 2.3 137 chr2R 8441263 intron Cyp4ad1 - chr2R 8441332 intron Cyp4ad1 - chr2R 8441400 exon Cyp4ad1 - chr2R_12_8440001 chr2R_8440001 RAL-738 604 chr2R 8483970 8483988 chr2R 8484046 8484046 6 72 3.5 8.5 6.0 0.9 76 chr2R 8483970 intron mtt - chr2R 8484008 intron mtt - chr2R 8484046 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-738 605 chr2R 8517711 8517738 chr2R 8517813 8517840 9 102 1.5 2.5 2.0 3.0 129 chr2R 8517711 intron mtt - chr2R 8517776 intron mtt - chr2R 8517840 intron mtt - chr2R_9_8515001 chr2R_8515001 RAL-738 606 chr2R 8524956 8524980 chr2R 8525095 8525119 4 139 5.0 5.5 5.2 0.6 163 chr2R 8524956 intron mtt - chr2R 8525038 intron mtt - chr2R 8525119 intron mtt - chr2R_4_8525001 chr2R_8525001 RAL-738 607 chr2R 8555391 8555399 chr2R 8555479 8555487 6 86 5.0 5.0 5.0 1.0 96 chr2R 8555391 intergenic not near genes chr2R 8555439 intergenic not near genes chr2R 8555487 intergenic not near genes chr2R_6_8555001 chr2R_8555001 RAL-738 608 chr2R 8555409 8555411 chr2R 8555477 8555499 4 83 3.0 5.0 4.0 0.8 90 chr2R 8555409 intergenic not near genes chr2R 8555454 intergenic not near genes chr2R 8555499 intergenic not near genes chr2R_4_8555001 chr2R_8555001 RAL-738 609 chr2R 8595962 8595987 chr2R 8596040 8596065 12 78 5.5 3.5 4.5 2.2 103 chr2R 8595962 intergenic not near genes chr2R 8596014 intergenic not near genes chr2R 8596065 intergenic not near genes chr2R_12_8595001 chr2R_8595001 RAL-738 610 chr2R 8603141 8603168 chr2R 8603329 8603359 12 189 2.0 5.5 3.8 2.5 218 chr2R 8603141 intron rgr + chr2R 8603250 intron rgr + chr2R 8603359 intron rgr + chr2R_12_8600001 chr2R_8600001 RAL-738 611 chr2R 8627753 8627761 chr2R 8627832 8627840 5 79 6.5 1.5 4.0 1.0 87 chr2R 8627753 intergenic beta3GalTII -,CG14749 + chr2R 8627796 intergenic CG14749 +,beta3GalTII - chr2R 8627840 intergenic CG14749 +,beta3GalTII - chr2R_5_8625001 chr2R_8625001 RAL-738 612 chr2R 8691123 8691151 chr2R 8691592 8691602 13 467 5.5 4.5 5.0 2.2 479 chr2R 8691123 intergenic Jon44E + chr2R 8691362 intergenic Jon44E + chr2R 8691602 exon Jon44E + chr2R_13_8690001 chr2R_8690001 RAL-738 613 chr2R 8722762 8722794 chr2R 8723003 8723009 pogo 16 232 5.0 5.0 5.0 2.7 247 chr2R 8722762 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723009 intron CG14767 - chr2R_16_8720001 chr2R_8720001 RAL-738 614 chr2R 8845395 8845422 chr2R 8845484 8845512 8 86 5.0 5.5 5.2 1.3 117 chr2R 8845395 intron sns + chr2R 8845454 intron sns + chr2R 8845512 intron sns + chr2R_8_8845001 chr2R_8845001 RAL-738 615 chr2R 8967130 8967157 chr2R 8967220 8967247 9 89 7.0 3.5 5.2 1.5 117 chr2R 8967130 intron CG8216 - chr2R 8967188 intron CG8216 - chr2R 8967247 intron CG8216 - chr2R_9_8965001 chr2R_8965001 RAL-738 616 chr2R 9047421 9047438 chr2R 9047516 9047533 5 95 4.0 2.5 3.2 1.2 112 chr2R 9047421 intron CG13743 - chr2R 9047477 intron CG13743 - chr2R 9047533 intron CG13743 - chr2R_5_9045001 chr2R_9045001 RAL-738 617 chr2R 9055790 9055825 chr2R 9055870 9055888 10 75 7.0 4.5 5.8 1.5 98 chr2R 9055790 intron CG13743 - chr2R 9055839 intron CG13743 - chr2R 9055888 intron CG13743 - chr2R_10_9055001 chr2R_9055001 RAL-738 618 chr2R 9063372 9063395 chr2R 9063644 9063664 5 271 1.5 1.5 1.5 2.0 292 chr2R 9063372 intron ana + chr2R 9063518 intron ana + chr2R 9063664 intron ana + chr2R_5_9060001 chr2R_9060001 RAL-738 619 chr2R 9065913 9065948 chr2R 9065995 9066030 16 81 5.0 5.0 5.0 2.7 117 chr2R 9065913 intron ana + chr2R 9065972 intron ana + chr2R 9066030 intron ana + chr2R_16_9065001 chr2R_9065001 RAL-738 620 chr2R 9076148 9076168 chr2R 9076223 9076244 9 75 5.0 3.0 4.0 1.8 96 chr2R 9076148 intron ana + chr2R 9076196 intron ana + chr2R 9076244 intron ana + chr2R_9_9075001 chr2R_9075001 RAL-738 621 chr2R 9078486 9078496 chr2R 9078564 9078574 6 78 3.0 5.5 4.2 1.2 88 chr2R 9078486 intergenic CG8083 + chr2R 9078530 intergenic CG8083 + chr2R 9078574 intergenic CG8083 + chr2R_6_9075001 chr2R_9075001 RAL-738 622 chr2R 9130351 9130380 chr2R 9130477 9130500 21 124 4.0 7.5 5.8 3.1 149 chr2R 9130351 intron CG18659 - chr2R 9130426 intron CG18659 - chr2R 9130500 intron CG18659 - chr2R_21_9130001 chr2R_9130001 RAL-738 623 chr2R 9151302 9151324 chr2R 9157772 9157794 Burdock 9 6469 6.0 6.0 6.0 1.3 6492 chr2R 9151302 exon CG30345 + chr2R 9154548 intergenic not near genes chr2R 9157794 intergenic CG8008 - chr2R_9_9150001 chr2R_9150001 RAL-738 624 chr2R 9161971 9162005 chr2R 9162056 9162090 15 81 9.5 5.5 7.5 1.8 119 chr2R 9161971 5` UTR CR44283 + chr2R 9162030 intergenic CG8046 -,CR44283 + chr2R 9162090 3` UTR CG8046 - chr2R_15_9160001 chr2R_9160001 RAL-738 625 chr2R 9183144 9183156 chr2R 9183215 9183232 5 77 2.5 5.5 4.0 1.0 88 chr2R 9183144 intron ltd - chr2R 9183188 intron ltd - chr2R 9183232 intron ltd - chr2R_5_9180001 chr2R_9180001 RAL-738 626 chr2R 9212693 9212720 chr2R 9213179 9213206 roo 11 481 6.0 4.0 5.0 1.8 513 chr2R 9212693 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 RAL-738 627 chr2R 9368126 9368145 chr2R 9368202 9368221 6 73 4.0 1.0 2.5 1.7 95 chr2R 9368126 intron CG13954 - chr2R 9368174 intron CG13954 - chr2R 9368221 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-738 628 chr2R 9378109 9378141 chr2R 9378191 9378195 17 74 6.5 6.0 6.2 2.4 86 chr2R 9378109 intron CG13954 - chr2R 9378152 intron CG13954 - chr2R 9378195 intron CG13954 - chr2R_17_9375001 chr2R_9375001 RAL-738 629 chr2R 9408228 9408250 chr2R 9408311 9408319 12 80 5.5 3.0 4.2 2.3 91 chr2R 9408228 intron wun - chr2R 9408274 intron wun - chr2R 9408319 intron wun - chr2R_12_9405001 chr2R_9405001 RAL-738 630 chr2R 9429796 9429826 chr2R 9429901 9429931 14 104 5.0 8.0 6.5 1.9 135 chr2R 9429796 intron Pdk + chr2R 9429864 intron Pdk + chr2R 9429931 intron Pdk + chr2R_14_9425001 chr2R_9425001 RAL-738 631 chr2R 9478491 9478513 chr2R 9478569 9478591 11 77 6.5 2.5 4.5 2.0 100 chr2R 9478491 intergenic Camta + chr2R 9478541 intergenic Camta + chr2R 9478591 intergenic not near genes chr2R_11_9475001 chr2R_9475001 RAL-738 632 chr2R 9480078 9480102 chr2R 9490609 9490633 roo 7 10531 4.0 4.5 4.2 1.3 10555 chr2R 9480078 intergenic not near genes chr2R 9485356 intergenic not near genes chr2R 9490633 intergenic not near genes chr2R_7_9485001 chr2R_9485001 RAL-738 633 chr2R 9535608 9535639 chr2R 9535751 9535782 16 141 2.0 3.0 2.5 4.6 174 chr2R 9535608 intron brp + chr2R 9535695 intron brp + chr2R 9535782 intron brp + chr2R_16_9535001 chr2R_9535001 RAL-738 634 chr2R 9541644 9541648 chr2R 9541706 9541722 4 70 1.0 5.5 3.2 1.0 78 chr2R 9541644 intergenic brp +,CG1888 - chr2R 9541683 intergenic brp +,CG1888 - chr2R 9541722 intergenic brp +,CG1888 - chr2R_4_9540001 chr2R_9540001 RAL-738 635 chr2R 9561825 9561847 chr2R 9561913 9561935 12 86 0.5 5.5 3.0 3.0 110 chr2R 9561825 3` UTR,intron CR45281 -,CG1809 + chr2R 9561880 3` UTR,intron CR45281 -,CG1809 + chr2R 9561935 3` UTR,intron CR45281 -,CG1809 + chr2R_12_9560001 chr2R_9560001 RAL-738 636 chr2R 9699422 9699440 chr2R 9699494 9699511 5 74 7.0 4.5 5.8 0.7 89 chr2R 9699422 intergenic not near genes chr2R 9699466 intergenic not near genes chr2R 9699511 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-738 637 chr2R 9726616 9726636 chr2R 9734161 9734187 17.6 9 7548 7.0 3.5 5.2 1.5 7571 chr2R 9726616 intron sqa - chr2R 9730402 intron sqa - chr2R 9734187 intron sqa - chr2R_9_9730001 chr2R_9730001 RAL-738 638 chr2R 9765149 9765177 chr2R 9765228 9765254 12 73 5.0 6.0 5.5 1.8 105 chr2R 9765149 exon trpl + chr2R 9765202 exon trpl + chr2R 9765254 exon trpl + chr2R_12_9765001 chr2R_9765001 RAL-738 639 chr2R 9862759 9862791 chr2R 9862835 9862867 10 71 1.5 4.0 2.8 2.6 108 chr2R 9862759 intergenic not near genes chr2R 9862813 intergenic not near genes chr2R 9862867 intergenic not near genes chr2R_10_9860001 chr2R_9860001 RAL-738 640 chr2R 9871046 9871064 chr2R 9871532 9871541 roo 9 484 1.0 11.5 6.2 1.2 495 chr2R 9871046 intron cbx - chr2R 9871294 intron cbx - chr2R 9871541 intron,5` UTR cbx -,CG18446 + chr2R_9_9870001 chr2R_9870001 RAL-738 641 chr2R 10017650 10017665 chr2R 10017729 10017729 6 74 7.0 4.5 5.8 0.9 79 chr2R 10017650 intron Pka-R2 - chr2R 10017690 intron Pka-R2 - chr2R 10017729 intron Pka-R2 - chr2R_6_10015001 chr2R_10015001 RAL-738 642 chr2R 10017669 10017675 chr2R 10017724 10017754 8 75 4.5 3.0 3.8 1.7 85 chr2R 10017669 intron Pka-R2 - chr2R 10017712 intron Pka-R2 - chr2R 10017754 intron Pka-R2 - chr2R_8_10015001 chr2R_10015001 RAL-738 643 chr2R 10122746 10122751 chr2R 10122952 10122961 5 209 3.5 2.5 3.0 1.2 215 chr2R 10122746 intergenic Ccs - chr2R 10122854 intergenic Ccs - chr2R 10122961 intergenic Ccs - chr2R_5_10120001 chr2R_10120001 RAL-738 644 chr2R 10169552 10169563 chr2R 10169617 10169643 6 72 6.0 8.0 7.0 0.8 91 chr2R 10169552 intron KCNQ - chr2R 10169598 intron KCNQ - chr2R 10169643 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-738 645 chr2R 10176877 10176908 chr2R 10186044 10186075 roo 11 9167 4.0 2.5 3.2 2.6 9198 chr2R 10176877 intron KCNQ - chr2R 10181476 intron KCNQ - chr2R 10186075 intron KCNQ - chr2R_11_10180001 chr2R_10180001 RAL-738 646 chr2R 10186114 10186128 chr2R 10186190 10186204 5 76 3.0 5.5 4.2 1.0 90 chr2R 10186114 intron KCNQ - chr2R 10186159 intron KCNQ - chr2R 10186204 intron KCNQ - chr2R_5_10185001 chr2R_10185001 RAL-738 647 chr2R 10225733 10225743 chr2R 10225815 10225825 6 82 5.5 3.0 4.2 1.2 92 chr2R 10225733 intron,intron CG12912 -,Hr46 - chr2R 10225779 intron,intron CG12912 -,Hr46 - chr2R 10225825 intron,intron CG12912 -,Hr46 - chr2R_6_10225001 chr2R_10225001 RAL-738 648 chr2R 10239009 10239038 chr2R 10239092 10239121 13 76 3.0 5.0 4.0 2.6 112 chr2R 10239009 intron Hdc + chr2R 10239065 intron Hdc + chr2R 10239121 intron Hdc + chr2R_13_10235001 chr2R_10235001 RAL-738 649 chr2R 10274822 10274825 chr2R 10274898 10274901 4 76 6.5 2.5 4.5 0.7 79 chr2R 10274822 intron CAP + chr2R 10274862 intron CAP + chr2R 10274901 intron CAP + chr2R_4_10270001 chr2R_10270001 RAL-738 650 chr2R 10300645 10300679 chr2R 10300741 10300775 9 94 3.5 0.0 1.8 3.2 130 chr2R 10300645 intron CAP + chr2R 10300710 intron CAP + chr2R 10300775 intron CAP + chr2R_9_10300001 chr2R_10300001 RAL-738 651 chr2R 10313319 10313353 chr2R 10313405 10313441 17 86 3.5 5.0 4.2 3.3 122 chr2R 10313319 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313441 intergenic Ndg + chr2R_17_10310001 chr2R_10310001 RAL-738 652 chr2R 10319718 10319741 chr2R 10319810 10319833 12 90 6.5 4.5 5.5 1.8 115 chr2R 10319718 intron Ndg + chr2R 10319776 intron Ndg + chr2R 10319833 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-738 653 chr2R 10409066 10409085 chr2R 10409142 10409161 12 76 0.5 8.0 4.2 2.3 95 chr2R 10409066 intron CG42732 - chr2R 10409114 intron CG42732 - chr2R 10409161 intron,exon CG42732 -,CG33477 - chr2R_12_10405001 chr2R_10405001 RAL-738 654 chr2R 10429018 10429048 chr2R 10429095 10429105 16 69 4.0 6.5 5.2 2.6 87 chr2R 10429018 intergenic not near genes chr2R 10429062 intergenic not near genes chr2R 10429105 intergenic not near genes chr2R_16_10425001 chr2R_10425001 RAL-738 655 chr2R 10454095 10454130 chr2R 10454172 10454206 15 76 4.5 4.0 4.2 2.9 111 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_15_10450001 chr2R_10450001 RAL-738 656 chr2R 10469022 10469044 chr2R 10469148 10469170 12 124 6.5 4.0 5.2 1.9 148 chr2R 10469022 intron CG11777 + chr2R 10469096 intron CG11777 + chr2R 10469170 intron CG11777 + chr2R_12_10465001 chr2R_10465001 RAL-738 657 chr2R 10469048 10469056 chr2R 10469147 10469182 6 118 3.0 4.0 3.5 1.3 134 chr2R 10469048 intron CG11777 + chr2R 10469115 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-738 658 chr2R 10546561 10546572 chr2R 10546652 10546663 7 91 10.0 5.0 7.5 0.8 102 chr2R 10546561 intergenic not near genes chr2R 10546612 intergenic not near genes chr2R 10546663 intergenic not near genes chr2R_7_10545001 chr2R_10545001 RAL-738 659 chr2R 10546576 10546589 chr2R 10546649 10546679 7 87 7.0 4.5 5.8 1.0 103 chr2R 10546576 intergenic not near genes chr2R 10546628 intergenic not near genes chr2R 10546679 intergenic not near genes chr2R_7_10545001 chr2R_10545001 RAL-738 660 chr2R 10563554 10563583 chr2R 10563630 10563643 10 75 2.0 8.0 5.0 1.7 89 chr2R 10563554 intron psq + chr2R 10563598 intron psq + chr2R 10563643 intron psq + chr2R_10_10560001 chr2R_10560001 RAL-738 661 chr2R 10574627 10574636 chr2R 10574708 10574714 6 80 6.5 8.0 7.2 0.7 87 chr2R 10574627 intron psq + chr2R 10574670 intron psq + chr2R 10574714 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-738 662 chr2R 10585573 10585577 chr2R 10594147 10594160 Tirant 5 8581 6.5 4.5 5.5 0.8 8587 chr2R 10585573 intron psq + chr2R 10589866 intron psq + chr2R 10594160 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-738 663 chr2R 10585581 10585591 chr2R 10594142 10594174 Tirant 10 8574 4.0 4.0 4.0 2.0 8593 chr2R 10585581 intron psq + chr2R 10589878 intron psq + chr2R 10594174 intron psq + chr2R_10_10585001 chr2R_10585001 RAL-738 664 chr2R 10644058 10644085 chr2R 10644136 10644163 13 75 1.5 1.5 1.5 5.2 105 chr2R 10644058 intron Git - chr2R 10644110 intron Git - chr2R 10644163 intron Git - chr2R_13_10640001 chr2R_10640001 RAL-738 665 chr2R 10779400 10779432 chr2R 10779476 10779508 13 76 2.0 1.0 1.5 5.2 108 chr2R 10779400 intron CG33144 - chr2R 10779454 intron CG33144 - chr2R 10779508 intron CG33144 - chr2R_13_10775001 chr2R_10775001 RAL-738 666 chr2R 10782955 10782982 chr2R 10783037 10783064 5 82 2.0 1.5 1.8 1.8 109 chr2R 10782955 intron,5` UTR CG33144 -,CR44299 + chr2R 10783010 intron,5` UTR CG33144 -,CR44299 + chr2R 10783064 intron,5` UTR CG33144 -,CR44299 + chr2R_5_10780001 chr2R_10780001 RAL-738 667 chr2R 10800114 10800141 chr2R 10800196 10800223 16 82 4.5 3.5 4.0 3.2 109 chr2R 10800114 intergenic wde - chr2R 10800168 intergenic wde - chr2R 10800223 intergenic wde - chr2R_16_10800001 chr2R_10800001 RAL-738 668 chr2R 10830798 10830809 chr2R 10830890 10830901 7 92 4.0 9.0 6.5 0.9 103 chr2R 10830798 intron CG12344 - chr2R 10830850 intron CG12344 - chr2R 10830901 intron CG12344 - chr2R_7_10830001 chr2R_10830001 RAL-738 669 chr2R 10852277 10852301 chr2R 10852400 10852424 11 120 2.0 6.0 4.0 2.2 147 chr2R 10852277 intron CG30015 - chr2R 10852350 intron CG30015 - chr2R 10852424 intron CG30015 - chr2R_11_10850001 chr2R_10850001 RAL-738 670 chr2R 10863127 10863157 chr2R 10863210 10863240 19 83 9.5 6.5 8.0 2.1 113 chr2R 10863127 intron CG30015 - chr2R 10863184 intron CG30015 - chr2R 10863240 intron CG30015 - chr2R_19_10860001 chr2R_10860001 RAL-738 671 chr2R 10922778 10922791 chr2R 10922864 10922877 7 86 0.0 8.0 4.0 1.4 99 chr2R 10922778 intergenic not near genes chr2R 10922828 intergenic not near genes chr2R 10922877 intergenic not near genes chr2R_7_10920001 chr2R_10920001 RAL-738 672 chr2R 10924558 10924560 chr2R 10924629 10924637 4 75 0.0 2.5 1.2 1.8 79 chr2R 10924558 intergenic not near genes chr2R 10924598 intergenic not near genes chr2R 10924637 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-738 673 chr2R 10937195 10937210 chr2R 10937378 10937381 5 179 4.5 2.5 3.5 1.1 186 chr2R 10937195 intergenic not near genes chr2R 10937288 intergenic not near genes chr2R 10937381 intergenic not near genes chr2R_5_10935001 chr2R_10935001 RAL-738 674 chr2R 10937805 10937831 chr2R 10937950 10937976 14 143 0.5 5.5 3.0 3.5 171 chr2R 10937805 intergenic not near genes chr2R 10937890 intergenic not near genes chr2R 10937976 intergenic Spn47C - chr2R_14_10935001 chr2R_10935001 RAL-738 675 chr2R 10948024 10948062 chr2R 10955575 10955597 17.6 12 7546 4.5 3.5 4.0 2.4 7573 chr2R 10948024 intergenic not near genes chr2R 10951810 intergenic not near genes chr2R 10955597 intergenic not near genes chr2R_12_10950001 chr2R_10950001 RAL-738 676 chr2R 10985089 10985101 chr2R 10985334 10985346 11 245 3.0 4.0 3.5 2.4 257 chr2R 10985089 intron luna - chr2R 10985218 intron luna - chr2R 10985346 intron luna - chr2R_11_10985001 chr2R_10985001 RAL-738 677 chr2R 11009816 11009848 chr2R 11018990 11018998 roo 11 9167 3.5 4.0 3.8 2.3 9182 chr2R 11009816 intron luna - chr2R 11014407 intron luna - chr2R 11018998 intron luna - chr2R_11_11010001 chr2R_11010001 RAL-738 678 chr2R 11019877 11019907 chr2R 11024943 11024964 jockey 6 5059 2.5 5.0 3.8 1.2 5087 chr2R 11019877 intron luna - chr2R 11022420 intron luna - chr2R 11024964 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-738 679 chr2R 11050510 11050528 chr2R 11050571 11050604 7 74 2.5 1.5 2.0 2.3 94 chr2R 11050510 intron luna - chr2R 11050557 intron luna - chr2R 11050604 intron luna - chr2R_7_11050001 chr2R_11050001 RAL-738 680 chr2R 11118169 11118183 chr2R 11118246 11118260 4 76 0.5 7.0 3.8 0.8 91 chr2R 11118169 3` UTR Cyp12d1-p - chr2R 11118214 3` UTR Cyp12d1-p - chr2R 11118260 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-738 681 chr2R 11129067 11129101 chr2R 11129156 11129189 18 86 4.5 6.5 5.5 2.8 122 chr2R 11129067 intergenic not near genes chr2R 11129128 intergenic not near genes chr2R 11129189 intergenic not near genes chr2R_18_11125001 chr2R_11125001 RAL-738 682 chr2R 11207813 11207849 chr2R 11208005 11208018 BS 12 184 10.0 3.5 6.8 1.5 205 chr2R 11207813 intron shn + chr2R 11207916 intron shn + chr2R 11208018 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-738 683 chr2R 11224095 11224102 chr2R 11224285 11224291 4 189 10.0 4.5 7.2 0.5 196 chr2R 11224095 intron CG7737 + chr2R 11224193 intron CG7737 + chr2R 11224291 intron CG7737 + chr2R_4_11220001 chr2R_11220001 RAL-738 684 chr2R 11297636 11297651 chr2R 11301937 11301972 flea 9 4317 6.5 5.5 6.0 1.3 4336 chr2R 11297636 intergenic CG42336 - chr2R 11299804 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_9_11295001 chr2R_11295001 RAL-738 685 chr2R 11344148 11344156 chr2R 11344244 11344252 4 95 0.0 2.5 1.2 1.8 104 chr2R 11344148 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344252 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-738 686 chr2R 11404797 11404812 chr2R 11404883 11404898 6 86 0.5 4.5 2.5 1.7 101 chr2R 11404797 intergenic not near genes chr2R 11404848 intergenic not near genes chr2R 11404898 intergenic not near genes chr2R_6_11400001 chr2R_11400001 RAL-738 687 chr2R 11415526 11415551 chr2R 11418665 11418674 opus 15 3138 5.0 7.5 6.2 2.1 3148 chr2R 11415526 intron Drip - chr2R 11417100 intron Drip - chr2R 11418674 intron Drip - chr2R_15_11415001 chr2R_11415001 RAL-738 688 chr2R 11472649 11472680 chr2R 11473846 11473877 pogo 14 1195 5.0 6.5 5.8 2.1 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_14_11470001 chr2R_11470001 RAL-738 689 chr2R 11494319 11494330 chr2R 11494402 11494413 6 83 0.0 3.0 1.5 2.4 94 chr2R 11494319 intron inv + chr2R 11494366 intron inv + chr2R 11494413 intron inv + chr2R_6_11490001 chr2R_11490001 RAL-738 690 chr2R 11555494 11555522 chr2R 11555610 11555638 9 114 0.0 4.0 2.0 3.0 144 chr2R 11555494 intergenic not near genes chr2R 11555566 intergenic not near genes chr2R 11555638 intergenic not near genes chr2R_9_11555001 chr2R_11555001 RAL-738 691 chr2R 11561962 11561972 chr2R 11562040 11562048 5 77 6.5 14.0 10.2 0.4 86 chr2R 11561962 intergenic not near genes chr2R 11562005 intergenic not near genes chr2R 11562048 intergenic not near genes chr2R_5_11560001 chr2R_11560001 RAL-738 692 chr2R 11631396 11631406 chr2R 11631476 11631485 5 78 2.5 3.0 2.8 1.3 89 chr2R 11631396 intron CG9005 - chr2R 11631440 intron CG9005 - chr2R 11631485 intron CG9005 - chr2R_5_11630001 chr2R_11630001 RAL-738 693 chr2R 11724175 11724188 chr2R 11724258 11724271 4 82 2.0 5.5 3.8 0.8 96 chr2R 11724175 intron pyr + chr2R 11724223 intron pyr + chr2R 11724271 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-738 694 chr2R 8518775 8518800 chr2R 12066188 12066203 8 3547411 22.5 15.5 19.0 0.4 3547428 chr2R 8518775 intron mtt - chr2R 10292489 intron CAP + chr2R 12066203 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-738 695 chr2R 12186000 12186037 chr2R 12186095 12186132 30 94 2.5 4.5 3.5 6.7 132 chr2R 12186000 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186132 intron Cyp6g1 + chr2R_30_12185001 chr2R_12185001 RAL-738 696 chr2R 12187471 12187502 chr2R 12190091 12190124 47 2625 137.5 104.0 120.8 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_47_12185001 chr2R_12185001 RAL-738 697 chr2R 12217576 12217602 chr2R 12217656 12217677 10 77 3.0 4.5 3.8 2.1 101 chr2R 12217576 intergenic not near genes chr2R 12217626 intergenic not near genes chr2R 12217677 intergenic not near genes chr2R_10_12215001 chr2R_12215001 RAL-738 698 chr2R 12363379 12363417 chr2R 12363811 12363849 28 429 5.5 1.5 3.5 6.2 470 chr2R 12363379 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_28_12360001 chr2R_12360001 RAL-738 699 chr2R 12385348 12385373 chr2R 12385428 12385453 18 80 0.5 5.0 2.8 4.7 105 chr2R 12385348 intergenic not near genes chr2R 12385400 intergenic not near genes chr2R 12385453 intergenic not near genes chr2R_18_12385001 chr2R_12385001 RAL-738 700 chr2R 12481142 12481157 chr2R 12482939 12482961 roo 4 1794 5.0 6.0 5.5 0.6 1819 chr2R 12481142 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482961 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-738 701 chr2R 12492100 12492122 chr2R 12492185 12492225 6 96 11.0 0.5 5.8 0.9 125 chr2R 12492100 intron fdl - chr2R 12492162 intron fdl - chr2R 12492225 intron fdl - chr2R_6_12490001 chr2R_12490001 RAL-738 702 chr2R 12501707 12501727 chr2R 12503850 12503889 Rt1c 5 2156 0.5 7.0 3.8 1.0 2182 chr2R 12501707 intron fdl - chr2R 12502798 intron fdl - chr2R 12503889 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-738 703 chr2R 12544757 12544779 chr2R 12544829 12544836 5 72 4.0 5.0 4.5 0.9 79 chr2R 12544757 intron fra + chr2R 12544796 intron fra + chr2R 12544836 intron fra + chr2R_5_12540001 chr2R_12540001 RAL-738 704 chr2R 12565566 12565597 chr2R 12565936 12565967 15 370 2.5 4.0 3.2 3.6 401 chr2R 12565566 intergenic not near genes chr2R 12565766 intergenic Cyp301a1 + chr2R 12565967 intergenic Cyp301a1 + chr2R_15_12565001 chr2R_12565001 RAL-738 705 chr2R 12606312 12606344 chr2R 12606804 12606805 19 489 6.0 2.5 4.2 3.7 493 chr2R 12606312 intron Amph + chr2R 12606558 intron Amph + chr2R 12606805 intron Amph + chr2R_19_12605001 chr2R_12605001 RAL-738 706 chr2R 12677311 12677407 chr2R 12677395 12677491 9 84 0.0 0.0 0.0 9.0 180 chr2R 12677311 intron CG42708 - chr2R 12677401 intron CG42708 - chr2R 12677491 intron CG42708 - chr2R_9_12675001 chr2R_12675001 RAL-738 707 chr2R 12707527 12707543 chr2R 12715890 12715909 roo 9 8366 0.0 2.0 1.0 4.5 8382 chr2R 12707527 intron CG42663 + chr2R 12711718 intron CG42663 + chr2R 12715909 intron CG42663 + chr2R_9_12710001 chr2R_12710001 RAL-738 708 chr2R 12722064 12722078 chr2R 12722175 12722188 5 111 2.5 6.0 4.2 1.0 124 chr2R 12722064 intron CG42663 + chr2R 12722126 intron CG42663 + chr2R 12722188 intron CG42663 + chr2R_5_12720001 chr2R_12720001 RAL-738 709 chr2R 12722082 12722092 chr2R 12722172 12722202 7 102 2.5 5.0 3.8 1.5 120 chr2R 12722082 intron CG42663 + chr2R 12722142 intron CG42663 + chr2R 12722202 intron CG42663 + chr2R_7_12720001 chr2R_12720001 RAL-738 710 chr2R 12767797 12767806 chr2R 12767872 12767882 4 76 4.5 13.5 9.0 0.4 85 chr2R 12767797 intergenic not near genes chr2R 12767840 intergenic not near genes chr2R 12767882 intergenic not near genes chr2R_4_12765001 chr2R_12765001 RAL-738 711 chr2R 12767807 12767814 chr2R 12767864 12767890 6 68 3.5 9.5 6.5 0.8 83 chr2R 12767807 intergenic not near genes chr2R 12767848 intergenic not near genes chr2R 12767890 intergenic not near genes chr2R_6_12765001 chr2R_12765001 RAL-738 712 chr2R 12772709 12772730 chr2R 12772846 12772860 11 134 4.5 2.5 3.5 2.4 151 chr2R 12772709 intergenic not near genes chr2R 12772784 intergenic not near genes chr2R 12772860 intergenic not near genes chr2R_11_12770001 chr2R_12770001 RAL-738 713 chr2R 12789300 12789328 chr2R 12797663 12797690 roo 6 8361 3.5 9.5 6.5 0.8 8390 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793495 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-738 714 chr2R 12819452 12819474 chr2R 12824521 12824529 jockey 9 5068 4.5 5.5 5.0 1.5 5077 chr2R 12819452 intergenic not near genes chr2R 12821990 intergenic not near genes chr2R 12824529 intergenic not near genes chr2R_9_12820001 chr2R_12820001 RAL-738 715 chr2R 12835353 12835378 chr2R 12835434 12835459 7 77 4.0 4.5 4.2 1.3 106 chr2R 12835353 intergenic not near genes chr2R 12835406 intergenic not near genes chr2R 12835459 intergenic not near genes chr2R_7_12835001 chr2R_12835001 RAL-738 716 chr2R 12988282 12988425 chr2R 12988393 12988529 8 104 0.0 0.0 0.0 8.0 247 chr2R 12988282 intergenic not near genes chr2R 12988406 intergenic not near genes chr2R 12988529 intergenic not near genes chr2R_8_12985001 chr2R_12985001 RAL-738 717 chr2R 13089754 13089782 chr2R 13089860 13089892 4 108 3.0 5.5 4.2 0.8 138 chr2R 13089754 intergenic not near genes chr2R 13089823 intergenic not near genes chr2R 13089892 intergenic not near genes chr2R_4_13085001 chr2R_13085001 RAL-738 718 chr2R 13136840 13136866 chr2R 13141636 13141664 Doc 12 4797 9.5 7.5 8.5 1.3 4824 chr2R 13136840 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141664 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-738 719 chr2R 13167426 13167462 chr2R 13167520 13167556 10 94 5.0 0.0 2.5 2.9 130 chr2R 13167426 intron GLaz - chr2R 13167491 intron GLaz - chr2R 13167556 intron GLaz - chr2R_10_13165001 chr2R_13165001 RAL-738 720 chr2R 13170718 13170750 chr2R 13170807 13170838 17 88 3.0 1.5 2.2 5.3 120 chr2R 13170718 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170778 intergenic CR45142 -,Spt-I + chr2R 13170838 intergenic CR45142 -,Spt-I + chr2R_17_13170001 chr2R_13170001 RAL-738 721 chr2R 13220549 13220563 chr2R 13220615 13220642 8 75 0.0 2.0 1.0 4.0 93 chr2R 13220549 intron CG17059 + chr2R 13220596 intron CG17059 + chr2R 13220642 intron CG17059 + chr2R_8_13220001 chr2R_13220001 RAL-738 722 chr2R 13272095 13272106 chr2R 13272176 13272187 7 78 7.5 4.5 6.0 1.0 92 chr2R 13272095 intron Dh31-R - chr2R 13272141 intron Dh31-R - chr2R 13272187 intron Dh31-R - chr2R_7_13270001 chr2R_13270001 RAL-738 723 chr2R 13272107 13272126 chr2R 13272172 13272201 14 74 2.5 3.0 2.8 3.7 94 chr2R 13272107 intron Dh31-R - chr2R 13272154 intron Dh31-R - chr2R 13272201 intron Dh31-R - chr2R_14_13270001 chr2R_13270001 RAL-738 724 chr2R 13321928 13321960 chr2R 13322034 13322066 11 105 3.5 2.5 3.0 2.8 138 chr2R 13321928 intergenic not near genes chr2R 13321997 intergenic not near genes chr2R 13322066 intergenic not near genes chr2R_11_13320001 chr2R_13320001 RAL-738 725 chr2R 13439109 13439230 chr2R 13439224 13439306 9 116 0.5 0.0 0.2 7.5 197 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439208 intergenic cnn -,CG42321 - chr2R 13439306 intergenic cnn -,CG42321 - chr2R_9_13435001 chr2R_13435001 RAL-738 726 chr2R 13530301 13530322 chr2R 13530386 13530407 6 85 7.5 0.0 3.8 1.2 106 chr2R 13530301 intron Vmat - chr2R 13530354 intron Vmat - chr2R 13530407 intron Vmat - chr2R_6_13530001 chr2R_13530001 RAL-738 727 chr2R 13540386 13540422 chr2R 13540636 13540672 9 247 0.0 3.5 1.8 3.2 286 chr2R 13540386 intron CG6145 - chr2R 13540529 intron CG6145 - chr2R 13540672 intron CG6145 - chr2R_9_13540001 chr2R_13540001 RAL-738 728 chr2R 13547083 13547109 chr2R 13547278 13547304 7 194 4.0 3.5 3.8 1.5 221 chr2R 13547083 intron CG6145 - chr2R 13547194 intron CG6145 - chr2R 13547304 intron CG6145 - chr2R_7_13545001 chr2R_13545001 RAL-738 729 chr2R 13554754 13554765 chr2R 13554839 13554850 6 85 0.5 7.5 4.0 1.2 96 chr2R 13554754 intron Roe1 + chr2R 13554802 intron Roe1 + chr2R 13554850 intron Roe1 + chr2R_6_13550001 chr2R_13550001 RAL-738 730 chr2R 13554767 13554774 chr2R 13554833 13554858 5 76 0.5 5.0 2.8 1.3 91 chr2R 13554767 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554858 intron Roe1 + chr2R_5_13550001 chr2R_13550001 RAL-738 731 chr2R 13580502 13580508 chr2R 13580851 13580858 jockey 4 349 6.0 5.5 5.8 0.6 356 chr2R 13580502 3` UTR CG6191 - chr2R 13580680 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580858 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-738 732 chr2R 13580514 13580534 chr2R 13580846 13580874 jockey 6 344 2.0 4.5 3.2 1.4 360 chr2R 13580514 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580874 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-738 733 chr2R 13728131 13728145 chr2R 13735792 13735806 opus 8 7661 2.5 5.0 3.8 1.7 7675 chr2R 13728131 intron fas + chr2R 13731968 intron fas + chr2R 13735806 intron fas + chr2R_8_13730001 chr2R_13730001 RAL-738 734 chr2R 13748033 13748046 chr2R 13748112 13748119 4 76 6.5 3.0 4.8 0.7 86 chr2R 13748033 3` UTR fas + chr2R 13748076 3` UTR fas + chr2R 13748119 3` UTR fas + chr2R_4_13745001 chr2R_13745001 RAL-738 735 chr2R 13768987 13768996 chr2R 13769078 13769095 5 97 6.0 6.5 6.2 0.7 108 chr2R 13768987 intergenic not near genes chr2R 13769041 intergenic not near genes chr2R 13769095 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-738 736 chr2R 13769002 13769010 chr2R 13769077 13769109 6 94 2.5 6.5 4.5 1.1 107 chr2R 13769002 intergenic not near genes chr2R 13769056 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-738 737 chr2R 13790332 13790343 chr2R 13790407 13790420 5 74 2.0 0.0 1.0 2.5 88 chr2R 13790332 intergenic not near genes chr2R 13790376 intergenic not near genes chr2R 13790420 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-738 738 chr2R 13905609 13905635 chr2R 13907590 13907597 Rt1a 8 1974 6.0 1.0 3.5 1.8 1988 chr2R 13905609 intron shot - chr2R 13906603 intron shot - chr2R 13907597 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-738 739 chr2R 13925870 13925886 chr2R 13926024 13926040 11 154 10.5 7.0 8.8 1.1 170 chr2R 13925870 intron shot - chr2R 13925955 intron shot - chr2R 13926040 intron shot - chr2R_11_13925001 chr2R_13925001 RAL-738 740 chr2R 14003627 14003646 chr2R 14003724 14003743 4 97 3.0 1.0 2.0 1.3 116 chr2R 14003627 intron mam + chr2R 14003685 intron mam + chr2R 14003743 intron mam + chr2R_4_14000001 chr2R_14000001 RAL-738 741 chr2R 14018170 14018194 chr2R 14018243 14018278 11 82 4.0 3.5 3.8 2.3 108 chr2R 14018170 intron mam + chr2R 14018224 intron mam + chr2R 14018278 intron mam + chr2R_11_14015001 chr2R_14015001 RAL-738 742 chr2R 14093432 14093457 chr2R 14109583 14109586 7 16148 3.0 3.0 3.0 1.8 16154 chr2R 14093432 intron Prosap - chr2R 14101509 intron Prosap - chr2R 14109586 intron Prosap - chr2R_7_14100001 chr2R_14100001 RAL-738 743 chr2R 14249851 14249869 chr2R 14250336 14250370 13 489 1.5 8.0 4.8 2.2 519 chr2R 14249851 exon Mdr50 + chr2R 14250110 exon Mdr50 + chr2R 14250370 exon Mdr50 + chr2R_13_14250001 chr2R_14250001 RAL-738 744 chr2R 14266769 14266794 chr2R 14266839 14266868 7 72 5.5 9.0 7.2 0.9 99 chr2R 14266769 intron CG8547 - chr2R 14266818 intron CG8547 - chr2R 14266868 intron CG8547 - chr2R_7_14265001 chr2R_14265001 RAL-738 745 chr2R 14357555 14357573 chr2R 14357645 14357663 9 89 4.0 3.5 3.8 1.9 108 chr2R 14357555 intergenic CG8617 -,Arc1 - chr2R 14357609 intergenic Arc1 -,CG8617 - chr2R 14357663 intergenic Arc1 -,CG8617 - chr2R_9_14355001 chr2R_14355001 RAL-738 746 chr2R 14405560 14405583 chr2R 14405891 14405900 5 327 5.5 6.5 6.0 0.7 340 chr2R 14405560 intergenic not near genes chr2R 14405730 intergenic not near genes chr2R 14405900 intergenic not near genes chr2R_5_14405001 chr2R_14405001 RAL-738 747 chr2R 14427233 14427246 chr2R 14427312 14427325 5 79 3.0 3.5 3.2 1.2 92 chr2R 14427233 intergenic phyl - chr2R 14427279 intergenic phyl - chr2R 14427325 intergenic phyl - chr2R_5_14425001 chr2R_14425001 RAL-738 748 chr2R 14460698 14460728 chr2R 14460782 14460812 11 79 7.0 6.0 6.5 1.5 114 chr2R 14460698 intron Oaz + chr2R 14460755 intron Oaz + chr2R 14460812 intron Oaz + chr2R_11_14460001 chr2R_14460001 RAL-738 749 chr2R 14467305 14467327 chr2R 14476463 14476485 roo 9 9157 3.5 4.5 4.0 1.8 9180 chr2R 14467305 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-738 750 chr2R 14488986 14489000 chr2R 14489465 14489469 5 479 2.5 1.5 2.0 1.7 483 chr2R 14488986 intron L + chr2R 14489228 intron L + chr2R 14489469 intron L + chr2R_5_14485001 chr2R_14485001 RAL-738 751 chr2R 14497390 14497418 chr2R 14498556 14498569 1360 7 1162 2.0 6.5 4.2 1.3 1179 chr2R 14497390 3` UTR Cpsf160 - chr2R 14497980 intron Cpsf160 - chr2R 14498569 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-738 752 chr2R 14530362 14530379 chr2R 14530451 14530454 5 86 4.0 5.0 4.5 0.9 92 chr2R 14530362 intron ttv + chr2R 14530408 intron ttv + chr2R 14530454 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-738 753 chr2R 14530742 14530773 chr2R 14530824 14530850 9 78 4.0 3.0 3.5 2.0 108 chr2R 14530742 intron ttv + chr2R 14530796 intron ttv + chr2R 14530850 intron ttv + chr2R_9_14530001 chr2R_14530001 RAL-738 754 chr2R 14565556 14565593 chr2R 14565633 14565669 16 76 3.0 2.5 2.8 4.2 113 chr2R 14565556 intron ttv + chr2R 14565612 intron ttv + chr2R 14565669 intron ttv + chr2R_16_14565001 chr2R_14565001 RAL-738 755 chr2R 14566444 14566476 chr2R 14566531 14566563 17 83 2.5 3.0 2.8 4.5 119 chr2R 14566444 intron ttv + chr2R 14566504 intron ttv + chr2R 14566563 intron ttv + chr2R_17_14565001 chr2R_14565001 RAL-738 756 chr2R 14623876 14623886 chr2R 14623972 14623982 4 96 0.5 2.0 1.2 1.8 106 chr2R 14623876 intron Uhg5 + chr2R 14623929 5` UTR Uhg5 + chr2R 14623982 intron Uhg5 + chr2R_4_14620001 chr2R_14620001 RAL-738 757 chr2R 14698058 14698081 chr2R 14698161 14698183 8 98 2.0 5.5 3.8 1.7 125 chr2R 14698058 intron mspo - chr2R 14698120 intron mspo - chr2R 14698183 intron mspo - chr2R_8_14695001 chr2R_14695001 RAL-738 758 chr2R 14718122 14718140 chr2R 14718208 14718213 5 80 5.0 5.0 5.0 0.8 91 chr2R 14718122 intergenic not near genes chr2R 14718168 intergenic not near genes chr2R 14718213 intergenic not near genes chr2R_5_14715001 chr2R_14715001 RAL-738 759 chr2R 14718143 14718147 chr2R 14718203 14718233 5 77 3.5 5.0 4.2 1.0 90 chr2R 14718143 intergenic not near genes chr2R 14718188 intergenic not near genes chr2R 14718233 intergenic not near genes chr2R_5_14715001 chr2R_14715001 RAL-738 760 chr2R 14799865 14799893 chr2R 14799940 14799969 10 76 3.0 4.0 3.5 2.2 104 chr2R 14799865 intron kn - chr2R 14799917 intron kn - chr2R 14799969 intron kn - chr2R_10_14795001 chr2R_14795001 RAL-738 761 chr2R 14816118 14816133 chr2R 14816203 14816229 4 87 8.5 9.0 8.8 0.4 111 chr2R 14816118 intergenic not near genes chr2R 14816174 intergenic not near genes chr2R 14816229 intergenic not near genes chr2R_4_14815001 chr2R_14815001 RAL-738 762 chr2R 14850070 14850088 chr2R 14850163 14850193 8 102 29.5 33.5 31.5 0.2 123 chr2R 14850070 exon SMC2 - chr2R 14850132 intron SMC2 - chr2R 14850193 exon SMC2 - chr2R_8_14850001 chr2R_14850001 RAL-738 763 chr2R 14855032 14855062 chr2R 14855124 14855134 10 86 4.5 2.5 3.5 2.2 102 chr2R 14855032 5` UTR Ciao1 - chr2R 14855083 intergenic Ciao1 -,HPS1 + chr2R 14855134 intergenic Ciao1 -,HPS1 + chr2R_10_14855001 chr2R_14855001 RAL-738 764 chr2R 14873688 14873718 chr2R 14875205 14875236 11 1516 4.0 5.0 4.5 2.0 1548 chr2R 14873688 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874462 exon Cyp6a17 + chr2R 14875236 exon Cyp6a17 + chr2R_11_14870001 chr2R_14870001 RAL-738 765 chr2R 14889206 14889234 chr2R 14897814 14897838 Max-element 15 8608 6.5 0.5 3.5 3.3 8632 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893522 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_15_14890001 chr2R_14890001 RAL-738 766 chr2R 14911702 14911726 chr2R 14911825 14911849 11 122 6.5 5.0 5.8 1.6 147 chr2R 14911702 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_11_14910001 chr2R_14910001 RAL-738 767 chr2R 14919047 14919176 chr2R 14919127 14919285 18 82 0.0 0.0 0.0 18.0 238 chr2R 14919047 intron CG10249 - chr2R 14919166 intron CG10249 - chr2R 14919285 intron CG10249 - chr2R_18_14915001 chr2R_14915001 RAL-738 768 chr2R 14922141 14922173 chr2R 14922217 14922249 15 74 4.5 5.0 4.8 2.6 108 chr2R 14922141 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922249 intron CG10249 - chr2R_15_14920001 chr2R_14920001 RAL-738 769 chr2R 14925208 14925231 chr2R 14925323 14925347 10 116 4.0 2.5 3.2 2.4 139 chr2R 14925208 intron CG10249 - chr2R 14925278 intron CG10249 - chr2R 14925347 intron CG10249 - chr2R_10_14925001 chr2R_14925001 RAL-738 770 chr2R 15004728 15004764 chr2R 15005057 15005098 jockey 9 332 3.0 0.0 1.5 3.6 370 chr2R 15004728 intergenic not near genes chr2R 15004913 intergenic not near genes chr2R 15005098 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-738 771 chr2R 15015461 15015479 chr2R 15022883 15022888 mdg1 7 7421 3.5 0.0 1.8 2.5 7427 chr2R 15015461 intron hbs + chr2R 15019174 intron hbs + chr2R 15022888 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-738 772 chr2R 15026306 15026338 chr2R 15026384 15026401 10 75 4.0 4.0 4.0 2.0 95 chr2R 15026306 intron hbs + chr2R 15026354 intron hbs + chr2R 15026401 intron hbs + chr2R_10_15025001 chr2R_15025001 RAL-738 773 chr2R 15084981 15085006 chr2R 15092030 15092055 297 9 7049 6.0 4.0 5.0 1.5 7074 chr2R 15084981 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_9_15085001 chr2R_15085001 RAL-738 774 chr2R 15094886 15094916 chr2R 15094963 15094972 17 75 2.0 2.0 2.0 5.7 86 chr2R 15094886 intergenic not near genes chr2R 15094929 intergenic not near genes chr2R 15094972 intergenic not near genes chr2R_17_15090001 chr2R_15090001 RAL-738 775 chr2R 15103914 15103948 chr2R 15104015 15104049 5 99 1.5 5.0 3.2 1.2 135 chr2R 15103914 intergenic not near genes chr2R 15103982 intergenic not near genes chr2R 15104049 intergenic not near genes chr2R_5_15100001 chr2R_15100001 RAL-738 776 chr2R 15119326 15119350 chr2R 15127802 15127831 Tirant 7 8475 6.5 8.5 7.5 0.8 8505 chr2R 15119326 intron chn + chr2R 15123578 intron chn + chr2R 15127831 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-738 777 chr2R 15133475 15133518 chr2R 15133554 15133571 15 77 6.0 5.0 5.5 2.3 96 chr2R 15133475 intron chn + chr2R 15133523 intron chn + chr2R 15133571 intron chn + chr2R_15_15130001 chr2R_15130001 RAL-738 778 chr2R 15137969 15138004 chr2R 15138049 15138086 8 80 4.5 0.0 2.2 2.5 117 chr2R 15137969 intron chn + chr2R 15138028 intron chn + chr2R 15138086 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-738 779 chr2R 15187903 15187919 chr2R 15187959 15187997 14 69 4.5 8.5 6.5 1.9 94 chr2R 15187903 intron igl + chr2R 15187950 intron igl + chr2R 15187997 intron igl + chr2R_14_15185001 chr2R_15185001 RAL-738 780 chr2R 15191647 15191680 chr2R 15191723 15191755 11 75 5.0 4.0 4.5 2.0 108 chr2R 15191647 intergenic not near genes chr2R 15191701 intergenic not near genes chr2R 15191755 intergenic not near genes chr2R_11_15190001 chr2R_15190001 RAL-738 781 chr2R 15252120 15252140 chr2R 15252197 15252199 7 74 5.5 1.0 3.2 1.7 79 chr2R 15252120 intron scb + chr2R 15252160 intron scb + chr2R 15252199 intron scb + chr2R_7_15250001 chr2R_15250001 RAL-738 782 chr2R 15296163 15296173 chr2R 15296243 15296256 4 81 4.0 5.5 4.8 0.7 93 chr2R 15296163 intron Trpm - chr2R 15296210 intron Trpm - chr2R 15296256 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-738 783 chr2R 15336288 15336296 chr2R 15336366 15336374 5 78 8.5 6.5 7.5 0.6 86 chr2R 15336288 intron Hr51 + chr2R 15336331 intron Hr51 + chr2R 15336374 intron Hr51 + chr2R_5_15335001 chr2R_15335001 RAL-738 784 chr2R 15336297 15336301 chr2R 15336362 15336379 5 69 6.5 5.0 5.8 0.7 82 chr2R 15336297 intron Hr51 + chr2R 15336338 intron Hr51 + chr2R 15336379 intron Hr51 + chr2R_5_15335001 chr2R_15335001 RAL-738 785 chr2R 15336305 15336317 chr2R 15336360 15336395 9 69 3.5 4.0 3.8 1.9 90 chr2R 15336305 intron Hr51 + chr2R 15336350 intron Hr51 + chr2R 15336395 intron Hr51 + chr2R_9_15335001 chr2R_15335001 RAL-738 786 chr2R 15451319 15451342 chr2R 15451896 15451924 9 580 4.5 5.0 4.8 1.6 605 chr2R 15451319 intron CG43729 + chr2R 15451622 intron CG43729 + chr2R 15451924 intron CG43729 + chr2R_9_15450001 chr2R_15450001 RAL-738 787 chr2R 15645687 15645705 chr2R 15645779 15645788 4 92 1.5 1.0 1.2 1.8 101 chr2R 15645687 intron CG42524 + chr2R 15645738 intron CG42524 + chr2R 15645788 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-738 788 chr2R 15685363 15685396 chr2R 15685466 15685468 7 93 4.0 2.5 3.2 1.7 105 chr2R 15685363 intron,exon Ranbp11 +,CG30082 - chr2R 15685416 intron,intron Ranbp11 +,CG30082 - chr2R 15685468 intron,intron Ranbp11 +,CG30082 - chr2R_7_15685001 chr2R_15685001 RAL-738 789 chr2R 15794870 15794901 chr2R 15794960 15794987 7 88 1.5 0.0 0.8 3.9 117 chr2R 15794870 intron,5` UTR Zasp52 -,tun + chr2R 15794928 intron,5` UTR Zasp52 -,tun + chr2R 15794987 intron,intron Zasp52 -,tun + chr2R_7_15790001 chr2R_15790001 RAL-738 790 chr2R 15840840 15840859 chr2R 15840913 15840928 8 75 5.0 5.5 5.2 1.3 88 chr2R 15840840 intron tun + chr2R 15840884 intron tun + chr2R 15840928 intron tun + chr2R_8_15840001 chr2R_15840001 RAL-738 791 chr2R 15887192 15887221 chr2R 15887298 15887327 9 101 2.0 8.5 5.2 1.5 135 chr2R 15887192 intron sli - chr2R 15887260 intron sli - chr2R 15887327 intron sli - chr2R_9_15885001 chr2R_15885001 RAL-738 792 chr2R 15911219 15911239 chr2R 15911300 15911308 6 79 4.0 4.0 4.0 1.2 89 chr2R 15911219 intron sli - chr2R 15911264 intron sli - chr2R 15911308 intron sli - chr2R_6_15910001 chr2R_15910001 RAL-738 793 chr2R 16245416 16245431 chr2R 16245510 16245525 7 94 0.0 4.0 2.0 2.3 109 chr2R 16245416 intron CngA - chr2R 16245470 intron CngA - chr2R 16245525 intron CngA - chr2R_7_16245001 chr2R_16245001 RAL-738 794 chr2R 16250970 16251003 chr2R 16251062 16251095 13 92 5.5 5.5 5.5 2.0 125 chr2R 16250970 intron CngA - chr2R 16251032 intron CngA - chr2R 16251095 intron CngA - chr2R_13_16250001 chr2R_16250001 RAL-738 795 chr2R 16404885 16404912 chr2R 16404972 16404999 16 86 3.0 2.5 2.8 4.2 114 chr2R 16404885 intron Sema-2b + chr2R 16404942 intron Sema-2b + chr2R 16404999 intron Sema-2b + chr2R_16_16400001 chr2R_16400001 RAL-738 796 chr2R 16452337 16452370 chr2R 16452418 16452431 16 77 5.0 9.0 7.0 2.0 94 chr2R 16452337 intergenic not near genes chr2R 16452384 intergenic not near genes chr2R 16452431 intergenic not near genes chr2R_16_16450001 chr2R_16450001 RAL-738 797 chr2R 16493173 16493208 chr2R 16493265 16493294 19 89 5.5 4.5 5.0 3.2 121 chr2R 16493173 3` UTR S-Lap8 + chr2R 16493234 intergenic S-Lap8 + chr2R 16493294 intergenic S-Lap8 + chr2R_19_16490001 chr2R_16490001 RAL-738 798 chr2R 16503875 16503903 chr2R 16503965 16503993 10 87 2.0 7.5 4.8 1.7 118 chr2R 16503875 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16503993 intron Sema-2a + chr2R_10_16500001 chr2R_16500001 RAL-738 799 chr2R 16518049 16518068 chr2R 16518125 16518131 8 73 3.5 3.0 3.2 1.9 82 chr2R 16518049 intron Sema-2a + chr2R 16518090 intron Sema-2a + chr2R 16518131 intron Sema-2a + chr2R_8_16515001 chr2R_16515001 RAL-738 800 chr2R 16539639 16539668 chr2R 16544846 16544877 copia 9 5209 3.0 4.0 3.5 2.0 5238 chr2R 16539639 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544877 intergenic not near genes chr2R_9_16540001 chr2R_16540001 RAL-738 801 chr2R 16558723 16558742 chr2R 16558804 16558807 4 73 4.0 4.5 4.2 0.8 84 chr2R 16558723 3` UTR DAT - chr2R 16558765 3` UTR DAT - chr2R 16558807 3` UTR DAT - chr2R_4_16555001 chr2R_16555001 RAL-738 802 chr2R 16558745 16558753 chr2R 16558800 16558833 5 63 1.5 3.5 2.5 1.4 88 chr2R 16558745 3` UTR DAT - chr2R 16558789 3` UTR DAT - chr2R 16558833 3` UTR DAT - chr2R_5_16555001 chr2R_16555001 RAL-738 803 chr2R 16571880 16571904 chr2R 16571966 16571999 7 93 3.0 5.5 4.2 1.3 119 chr2R 16571880 intergenic CG4927 + chr2R 16571940 intergenic CG4927 + chr2R 16571999 intergenic CG4927 + chr2R_7_16570001 chr2R_16570001 RAL-738 804 chr2R 16617059 16617090 chr2R 16617138 16617169 10 73 5.5 3.0 4.2 1.9 110 chr2R 16617059 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_10_16615001 chr2R_16615001 RAL-738 805 chr2R 16665122 16665144 chr2R 16665206 16665228 9 84 1.5 3.0 2.2 2.8 106 chr2R 16665122 intron Picot - chr2R 16665175 intron Picot - chr2R 16665228 intron Picot - chr2R_9_16665001 chr2R_16665001 RAL-738 806 chr2R 16688794 16688820 chr2R 16689155 16689181 14 359 6.0 5.5 5.8 2.1 387 chr2R 16688794 intron CG30463 - chr2R 16688988 intron CG30463 - chr2R 16689181 intron CG30463 - chr2R_14_16685001 chr2R_16685001 RAL-738 807 chr2R 16705080 16705112 chr2R 16705173 16705201 13 91 7.5 5.0 6.2 1.8 121 chr2R 16705080 intron CG30463 - chr2R 16705140 intron CG30463 - chr2R 16705201 intron CG30463 - chr2R_13_16705001 chr2R_16705001 RAL-738 808 chr2R 16732865 16732883 chr2R 16733035 16733053 9 169 2.0 3.5 2.8 2.4 188 chr2R 16732865 5` UTR CG30463 - chr2R 16732959 intergenic CG30463 - chr2R 16733053 intergenic CG30463 - chr2R_9_16730001 chr2R_16730001 RAL-738 809 chr2R 16737141 16737164 chr2R 16737237 16737254 14 93 9.0 12.0 10.5 1.2 113 chr2R 16737141 3` UTR CG43104 - chr2R 16737198 3` UTR CG43104 - chr2R 16737254 exon CG43104 - chr2R_14_16735001 chr2R_16735001 RAL-738 810 chr2R 16740908 16740923 chr2R 16740985 16740989 10 83 2.5 9.0 5.8 1.5 81 chr2R 16740908 intergenic not near genes chr2R 16740948 intergenic not near genes chr2R 16740989 intergenic not near genes chr2R_10_16740001 chr2R_16740001 RAL-738 811 chr2R 16775642 16775676 chr2R 16775906 16775940 11 259 2.5 5.5 4.0 2.2 298 chr2R 16775642 3` UTR Arp53D + chr2R 16775791 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_11_16775001 chr2R_16775001 RAL-738 812 chr2R 16787479 16787496 chr2R 16787556 16787569 8 79 6.5 0.0 3.2 1.9 90 chr2R 16787479 intron CG5522 + chr2R 16787524 intron CG5522 + chr2R 16787569 intron CG5522 + chr2R_8_16785001 chr2R_16785001 RAL-738 813 chr2R 16808752 16808766 chr2R 16808881 16808899 9 139 2.5 4.0 3.2 2.1 147 chr2R 16808752 intergenic not near genes chr2R 16808826 intergenic not near genes chr2R 16808899 intergenic not near genes chr2R_9_16805001 chr2R_16805001 RAL-738 814 chr2R 16893777 16893802 chr2R 16893858 16893880 11 80 5.0 5.0 5.0 1.8 103 chr2R 16893777 intron CG8910 - chr2R 16893828 intron CG8910 - chr2R 16893880 intron CG8910 - chr2R_11_16890001 chr2R_16890001 RAL-738 815 chr2R 16933329 16933355 chr2R 16933428 16933454 7 99 3.5 3.0 3.2 1.7 125 chr2R 16933329 intron Pkc53E + chr2R 16933392 intron Pkc53E + chr2R 16933454 intron Pkc53E + chr2R_7_16930001 chr2R_16930001 RAL-738 816 chr2R 16975213 16975223 chr2R 16975285 16975300 6 76 4.0 2.5 3.2 1.4 87 chr2R 16975213 intron Cbp53E + chr2R 16975256 intron Cbp53E + chr2R 16975300 intron Cbp53E + chr2R_6_16975001 chr2R_16975001 RAL-738 817 chr2R 17077926 17077950 chr2R 17078004 17078026 10 76 2.5 3.5 3.0 2.5 100 chr2R 17077926 intron CG30460 - chr2R 17077976 intron CG30460 - chr2R 17078026 intron CG30460 - chr2R_10_17075001 chr2R_17075001 RAL-738 818 chr2R 17147250 17147263 chr2R 17152281 17152294 jockey 6 5031 6.0 7.0 6.5 0.8 5044 chr2R 17147250 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152294 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-738 819 chr2R 17161174 17161205 chr2R 17161258 17161280 10 80 1.0 8.5 4.8 1.7 106 chr2R 17161174 intergenic CG30457 - chr2R 17161227 intergenic CG30457 - chr2R 17161280 intergenic CG30457 - chr2R_10_17160001 chr2R_17160001 RAL-738 820 chr2R 17176358 17176373 chr2R 17182548 17182554 diver 6 6187 3.0 5.0 4.0 1.2 6196 chr2R 17176358 intergenic not near genes chr2R 17179456 intergenic not near genes chr2R 17182554 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-738 821 chr2R 17176377 17176389 chr2R 17182545 17182579 diver 7 6185 2.0 4.5 3.2 1.7 6202 chr2R 17176377 intergenic not near genes chr2R 17179478 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_7_17175001 chr2R_17175001 RAL-738 822 chr2R 17232384 17232417 chr2R 17232476 17232509 14 88 3.0 8.5 5.8 2.1 125 chr2R 17232384 intron mbl + chr2R 17232446 intron mbl + chr2R 17232509 intron mbl + chr2R_14_17230001 chr2R_17230001 RAL-738 823 chr2R 17236515 17236541 chr2R 17241714 17241743 copia 10 5200 4.0 9.5 6.8 1.3 5228 chr2R 17236515 intron mbl + chr2R 17239129 intron mbl + chr2R 17241743 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-738 824 chr2R 17263319 17263325 chr2R 17263398 17263405 4 80 0.0 4.0 2.0 1.3 86 chr2R 17263319 intron mbl + chr2R 17263362 intron mbl + chr2R 17263405 intron mbl + chr2R_4_17260001 chr2R_17260001 RAL-738 825 chr2R 17389266 17389304 chr2R 17389357 17389375 17 80 5.5 5.5 5.5 2.6 109 chr2R 17389266 intergenic CR44344 - chr2R 17389320 intergenic CR44344 - chr2R 17389375 intergenic CR44344 - chr2R_17_17385001 chr2R_17385001 RAL-738 826 chr2R 17459007 17459016 chr2R 17459092 17459101 7 84 11.0 3.5 7.2 0.9 94 chr2R 17459007 intron CG14478 + chr2R 17459054 intron CG14478 + chr2R 17459101 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-738 827 chr2R 17459019 17459035 chr2R 17459090 17459120 6 80 7.0 3.5 5.2 1.0 101 chr2R 17459019 intron CG14478 + chr2R 17459070 intron CG14478 + chr2R 17459120 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-738 828 chr2R 17470342 17470351 chr2R 17470425 17470434 4 84 1.0 3.5 2.2 1.2 92 chr2R 17470342 intron qkr54B + chr2R 17470388 intron qkr54B + chr2R 17470434 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-738 829 chr2R 17485931 17485944 chr2R 17490688 17490703 F-element 8 4759 6.5 6.5 6.5 1.1 4772 chr2R 17485931 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488317 intron NT5E-2 + chr2R 17490703 intron NT5E-2 + chr2R_8_17485001 chr2R_17485001 RAL-738 830 chr2R 17559161 17559186 chr2R 17559297 17559312 4 134 2.5 1.0 1.8 1.4 151 chr2R 17559161 intron Klp54D + chr2R 17559236 intron Klp54D + chr2R 17559312 intron Klp54D + chr2R_4_17555001 chr2R_17555001 RAL-738 831 chr2R 17637832 17637839 chr2R 17637912 17637919 6 80 2.5 3.5 3.0 1.5 87 chr2R 17637832 intron CG10936 - chr2R 17637876 intron CG10936 - chr2R 17637919 intron CG10936 - chr2R_6_17635001 chr2R_17635001 RAL-738 832 chr2R 17637852 17637855 chr2R 17637911 17637935 4 74 2.0 3.5 2.8 1.1 83 chr2R 17637852 intron CG10936 - chr2R 17637894 intron CG10936 - chr2R 17637935 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-738 833 chr2R 17657330 17657350 chr2R 17657428 17657448 10 97 6.5 6.5 6.5 1.3 118 chr2R 17657330 intron CCHa1-R - chr2R 17657389 intron CCHa1-R - chr2R 17657448 intron CCHa1-R - chr2R_10_17655001 chr2R_17655001 RAL-738 834 chr2R 17661557 17661582 chr2R 17661628 17661662 13 74 5.5 6.0 5.8 1.9 105 chr2R 17661557 intron CCHa1-R - chr2R 17661610 intron CCHa1-R - chr2R 17661662 intron CCHa1-R - chr2R_13_17660001 chr2R_17660001 RAL-738 835 chr2R 17708397 17708423 chr2R 17708478 17708504 10 81 1.5 4.5 3.0 2.5 107 chr2R 17708397 intron CG6424 - chr2R 17708450 intron CG6424 - chr2R 17708504 intron CG6424 - chr2R_10_17705001 chr2R_17705001 RAL-738 836 chr2R 17709989 17710114 chr2R 17710080 17710192 16 84 1.0 3.0 2.0 5.3 203 chr2R 17709989 intron CG6424 - chr2R 17710090 intron CG6424 - chr2R 17710192 intron CG6424 - chr2R_16_17710001 chr2R_17710001 RAL-738 837 chr2R 17725195 17725233 chr2R 17725309 17725347 18 105 5.0 3.5 4.2 3.5 152 chr2R 17725195 3` UTR Snx16 - chr2R 17725271 3` UTR Snx16 - chr2R 17725347 3` UTR Snx16 - chr2R_18_17725001 chr2R_17725001 RAL-738 838 chr2R 17782370 17782387 chr2R 17783573 17783590 pogo 6 1203 5.0 3.5 4.2 1.2 1220 chr2R 17782370 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783590 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-738 839 chr2R 17784026 17784044 chr2R 17784267 17784285 pogo 13 240 13.0 9.5 11.2 1.1 259 chr2R 17784026 intergenic mir-31a - chr2R 17784156 intergenic mir-31a - chr2R 17784285 intergenic mir-31a - chr2R_13_17780001 chr2R_17780001 RAL-738 840 chr2R 17784047 17784055 chr2R 17784265 17784296 pogo 10 232 9.0 9.5 9.2 1.0 249 chr2R 17784047 intergenic mir-31a - chr2R 17784172 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-738 841 chr2R 17852927 17852959 chr2R 17853018 17853050 13 90 3.0 6.5 4.8 2.2 123 chr2R 17852927 intron olf186-F + chr2R 17852988 intron olf186-F + chr2R 17853050 intron olf186-F + chr2R_13_17850001 chr2R_17850001 RAL-738 842 chr2R 17982924 17982949 chr2R 17983009 17983034 9 84 7.5 4.0 5.8 1.3 110 chr2R 17982924 intron dpr13 - chr2R 17982979 intron dpr13 - chr2R 17983034 intron dpr13 - chr2R_9_17980001 chr2R_17980001 RAL-738 843 chr2R 17987360 17987375 chr2R 17987436 17987453 4 78 1.5 8.0 4.8 0.7 93 chr2R 17987360 intron dpr13 - chr2R 17987406 intron dpr13 - chr2R 17987453 intron dpr13 - chr2R_4_17985001 chr2R_17985001 RAL-738 844 chr2R 18001851 18001867 chr2R 18002039 18002050 6 187 20.0 20.5 20.2 0.3 199 chr2R 18001851 intron dpr13 - chr2R 18001950 intron dpr13 - chr2R 18002050 intron dpr13 - chr2R_6_18000001 chr2R_18000001 RAL-738 845 chr2R 18045668 18045700 chr2R 18046020 18046052 jockey 10 352 3.5 2.0 2.8 2.6 384 chr2R 18045668 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046052 intergenic CG5767 - chr2R_10_18045001 chr2R_18045001 RAL-738 846 chr2R 18111688 18111709 chr2R 18115556 18115577 F-element 15 3868 2.5 4.5 3.5 3.3 3889 chr2R 18111688 intergenic not near genes chr2R 18113632 intergenic not near genes chr2R 18115577 intergenic not near genes chr2R_15_18110001 chr2R_18110001 RAL-738 847 chr2R 18124342 18124365 chr2R 18124419 18124426 11 72 4.5 4.5 4.5 2.0 84 chr2R 18124342 intron stau - chr2R 18124384 intron stau - chr2R 18124426 intron stau - chr2R_11_18120001 chr2R_18120001 RAL-738 848 chr2R 18168406 18168429 chr2R 18168507 18168539 7 109 5.5 4.5 5.0 1.2 133 chr2R 18168406 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168472 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168539 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R_7_18165001 chr2R_18165001 RAL-738 849 chr2R 18390887 18390897 chr2R 18390974 18390984 6 87 0.0 3.5 1.8 2.1 97 chr2R 18390887 intergenic CG15068 - chr2R 18390936 intergenic CG15068 - chr2R 18390984 intergenic CG15068 - chr2R_6_18390001 chr2R_18390001 RAL-738 850 chr2R 18402512 18402532 chr2R 18402590 18402606 8 81 3.0 12.5 7.8 0.9 94 chr2R 18402512 intergenic not near genes chr2R 18402559 intergenic not near genes chr2R 18402606 intergenic not near genes chr2R_8_18400001 chr2R_18400001 RAL-738 851 chr2R 18405756 18405788 chr2R 18405837 18405868 4 78 3.0 0.0 1.5 1.6 112 chr2R 18405756 intergenic GstE6 +,GstE5 + chr2R 18405812 intergenic GstE6 +,GstE5 + chr2R 18405868 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-738 852 chr2R 18505771 18505776 chr2R 18505840 18505847 4 76 0.5 5.5 3.0 1.0 76 chr2R 18505771 intergenic not near genes chr2R 18505809 intergenic not near genes chr2R 18505847 intergenic not near genes chr2R_4_18505001 chr2R_18505001 RAL-738 853 chr2R 18526906 18526930 chr2R 18526997 18527001 6 84 3.5 0.0 1.8 2.1 95 chr2R 18526906 intergenic CG43066 + chr2R 18526954 intergenic CG10924 + chr2R 18527001 intergenic CG10924 + chr2R_6_18525001 chr2R_18525001 RAL-738 854 chr2R 18533384 18533401 chr2R 18533461 18533483 7 81 3.5 12.0 7.8 0.8 99 chr2R 18533384 exon CG10924 + chr2R 18533434 exon CG10924 + chr2R 18533483 exon CG10924 + chr2R_7_18530001 chr2R_18530001 RAL-738 855 chr2R 18547641 18547668 chr2R 18547722 18547749 10 80 4.0 5.5 4.8 1.7 108 chr2R 18547641 3` UTR Rgk2 + chr2R 18547695 3` UTR Rgk2 + chr2R 18547749 3` UTR Rgk2 + chr2R_10_18545001 chr2R_18545001 RAL-738 856 chr2R 18575797 18575819 chr2R 18581985 18582007 3S18 6 6186 3.0 6.5 4.8 1.0 6210 chr2R 18575797 intron GEFmeso - chr2R 18578902 intron GEFmeso - chr2R 18582007 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-738 857 chr2R 18575820 18575831 chr2R 18581984 18582018 3S18 7 6180 1.5 6.5 4.0 1.4 6198 chr2R 18575820 intron GEFmeso - chr2R 18578919 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-738 858 chr2R 18590868 18590884 chr2R 18600020 18600020 roo 4 9148 10.0 4.0 7.0 0.5 9152 chr2R 18590868 intron GEFmeso - chr2R 18595444 intron GEFmeso - chr2R 18600020 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-738 859 chr2R 18590886 18590901 chr2R 18600019 18600020 roo 10 9142 3.0 4.0 3.5 2.2 9134 chr2R 18590886 intron GEFmeso - chr2R 18595453 intron GEFmeso - chr2R 18600020 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-738 860 chr2R 18612779 18612801 chr2R 18612863 18612885 12 82 4.5 1.5 3.0 3.0 106 chr2R 18612779 intergenic CG42697 -,CG10927 + chr2R 18612832 intergenic CG42697 -,CG10927 + chr2R 18612885 intergenic CG42697 -,CG10927 + chr2R_12_18610001 chr2R_18610001 RAL-738 861 chr2R 18646412 18646435 chr2R 18646556 18646580 11 145 3.5 5.0 4.2 2.1 168 chr2R 18646412 intron SP2637 - chr2R 18646496 intron SP2637 - chr2R 18646580 intron SP2637 - chr2R_11_18645001 chr2R_18645001 RAL-738 862 chr2R 18692902 18692921 chr2R 18692989 18693008 12 86 5.0 4.0 4.5 2.2 106 chr2R 18692902 intron Sik3 + chr2R 18692955 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_12_18690001 chr2R_18690001 RAL-738 863 chr2R 18713235 18713273 chr2R 18713312 18713350 20 75 5.0 3.0 4.0 4.0 115 chr2R 18713235 intergenic not near genes chr2R 18713292 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_20_18710001 chr2R_18710001 RAL-738 864 chr2R 18808064 18808082 chr2R 18808153 18808171 5 88 1.0 1.5 1.2 2.3 107 chr2R 18808064 intergenic CG15096 - chr2R 18808118 intergenic CG15096 - chr2R 18808171 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-738 865 chr2R 18926506 18926516 chr2R 18926593 18926603 9 87 6.0 3.0 4.5 1.6 97 chr2R 18926506 intron sano + chr2R 18926554 intron sano + chr2R 18926603 intron sano + chr2R_9_18925001 chr2R_18925001 RAL-738 866 chr2R 18930451 18930484 chr2R 18930544 18930577 5 93 3.0 4.0 3.5 1.1 126 chr2R 18930451 intron sano + chr2R 18930514 intron sano + chr2R 18930577 intron sano + chr2R_5_18930001 chr2R_18930001 RAL-738 867 chr2R 18989021 18989046 chr2R 18989099 18989124 12 78 4.0 2.5 3.2 2.9 103 chr2R 18989021 intron tn + chr2R 18989072 intron tn + chr2R 18989124 intron tn + chr2R_12_18985001 chr2R_18985001 RAL-738 868 chr2R 19015429 19015465 chr2R 19015517 19015544 8 86 1.5 4.0 2.8 2.1 115 chr2R 19015429 intergenic not near genes chr2R 19015486 intergenic not near genes chr2R 19015544 intergenic not near genes chr2R_8_19015001 chr2R_19015001 RAL-738 869 chr2R 19026049 19026060 chr2R 19026150 19026156 4 100 9.0 1.5 5.2 0.6 107 chr2R 19026049 intron 5-HT1B - chr2R 19026102 intron 5-HT1B - chr2R 19026156 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-738 870 chr2R 19067723 19067752 chr2R 19067799 19067819 7 75 1.0 1.0 1.0 3.5 96 chr2R 19067723 intron 5-HT1A + chr2R 19067771 intron 5-HT1A + chr2R 19067819 intron 5-HT1A + chr2R_7_19065001 chr2R_19065001 RAL-738 871 chr2R 19168739 19168763 chr2R 19168820 19168827 5 75 4.0 3.5 3.8 1.0 88 chr2R 19168739 intron CG10737 + chr2R 19168783 intron CG10737 + chr2R 19168827 intron CG10737 + chr2R_5_19165001 chr2R_19165001 RAL-738 872 chr2R 19234848 19234865 chr2R 19234929 19234947 7 80 3.0 6.5 4.8 1.2 99 chr2R 19234848 intron cora + chr2R 19234898 intron cora + chr2R 19234947 intron cora + chr2R_7_19230001 chr2R_19230001 RAL-738 873 chr2R 19300960 19300995 chr2R 19301043 19301079 14 83 3.0 6.0 4.5 2.5 119 chr2R 19300960 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301079 intron Tab2 + chr2R_14_19300001 chr2R_19300001 RAL-738 874 chr2R 19385113 19385143 chr2R 19385656 19385686 10 541 0.5 1.5 1.0 5.0 573 chr2R 19385113 intergenic CG10073 + chr2R 19385400 intergenic CG10073 + chr2R 19385686 intergenic CG10081 + chr2R_10_19385001 chr2R_19385001 RAL-738 875 chr2R 19522643 19522675 chr2R 19522722 19522753 11 78 1.5 2.0 1.8 3.9 110 chr2R 19522643 3` UTR sm - chr2R 19522698 3` UTR sm - chr2R 19522753 3` UTR sm - chr2R_11_19520001 chr2R_19520001 RAL-738 876 chr2R 19637521 19637550 chr2R 19637696 19637718 9 169 6.5 5.0 5.8 1.3 197 chr2R 19637521 5` UTR mir-4983 + chr2R 19637620 intron CG43277 + chr2R 19637718 exon CG43277 + chr2R_9_19635001 chr2R_19635001 RAL-738 877 chr2R 19774020 19774042 chr2R 19774133 19774155 9 113 3.0 3.5 3.2 2.1 135 chr2R 19774020 intergenic not near genes chr2R 19774088 intergenic not near genes chr2R 19774155 intergenic not near genes chr2R_9_19770001 chr2R_19770001 RAL-738 878 chr2R 19776597 19776629 chr2R 19779920 19779952 jockey 17 3318 3.0 10.0 6.5 2.3 3355 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_17_19775001 chr2R_19775001 RAL-738 879 chr2R 19914847 19914857 chr2R 19922259 19922269 mdg1 5 7412 8.5 2.0 5.2 0.8 7422 chr2R 19914847 intergenic not near genes chr2R 19918558 intergenic not near genes chr2R 19922269 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-738 880 chr2R 19914858 19914873 chr2R 19922258 19922263 mdg1 10 7407 7.0 2.0 4.5 1.8 7405 chr2R 19914858 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922263 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-738 881 chr2R 19933026 19933060 chr2R 19933101 19933109 5 62 7.5 3.5 5.5 0.8 83 chr2R 19933026 intergenic not near genes chr2R 19933068 intergenic not near genes chr2R 19933109 intergenic not near genes chr2R_5_19930001 chr2R_19930001 RAL-738 882 chr2R 19957431 19957463 chr2R 19962633 19962664 copia 10 5198 3.5 2.0 2.8 2.6 5233 chr2R 19957431 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_10_19960001 chr2R_19960001 RAL-738 883 chr2R 20069244 20069274 chr2R 20071874 20071883 opus 13 2627 6.0 4.5 5.2 2.1 2639 chr2R 20069244 intergenic not near genes chr2R 20070564 intergenic not near genes chr2R 20071883 intergenic not near genes chr2R_13_20070001 chr2R_20070001 RAL-738 884 chr2R 20080611 20080620 chr2R 20080688 20080696 6 77 0.0 12.0 6.0 0.9 85 chr2R 20080611 intergenic not near genes chr2R 20080654 intergenic not near genes chr2R 20080696 intergenic not near genes chr2R_6_20080001 chr2R_20080001 RAL-738 885 chr2R 20088014 20088027 chr2R 20088110 20088135 1360 6 102 2.0 6.5 4.2 1.2 121 chr2R 20088014 intergenic not near genes chr2R 20088074 intergenic not near genes chr2R 20088135 intergenic not near genes chr2R_6_20085001 chr2R_20085001 RAL-738 886 chr2R 20288276 20288302 chr2R 20288360 20288386 11 82 1.0 4.5 2.8 2.9 110 chr2R 20288276 3` UTR CG34199 + chr2R 20288331 3` UTR CG34199 + chr2R 20288386 3` UTR Cpr56F - chr2R_11_20285001 chr2R_20285001 RAL-738 887 chr2R 20405088 20405113 chr2R 20406001 20406017 10 913 5.0 5.5 5.2 1.6 929 chr2R 20405088 intergenic not near genes chr2R 20405552 intergenic not near genes chr2R 20406017 intergenic not near genes chr2R_10_20405001 chr2R_20405001 RAL-738 888 chr2R 20523046 20523068 chr2R 20523149 20523173 13 102 7.5 7.0 7.2 1.6 127 chr2R 20523046 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523173 intergenic not near genes chr2R_13_20520001 chr2R_20520001 RAL-738 889 chr2R 20528772 20528783 chr2R 20528926 20528952 7 165 2.0 10.5 6.2 1.0 180 chr2R 20528772 exon CG30151 - chr2R 20528862 exon CG30151 - chr2R 20528952 exon CG30151 - chr2R_7_20525001 chr2R_20525001 RAL-738 890 chr2R 20572574 20572586 chr2R 20572664 20572676 6 89 5.0 7.0 6.0 0.9 102 chr2R 20572574 intron qsm - chr2R 20572625 intron qsm - chr2R 20572676 intron qsm - chr2R_6_20570001 chr2R_20570001 RAL-738 891 chr2R 20714754 20714790 chr2R 20714843 20714878 20 84 7.0 7.0 7.0 2.5 124 chr2R 20714754 intron dpr + chr2R 20714816 intron dpr + chr2R 20714878 intron dpr + chr2R_20_20710001 chr2R_20710001 RAL-738 892 chr2R 20739452 20739477 chr2R 20744220 20744243 F-element 7 4764 4.0 9.5 6.8 0.9 4791 chr2R 20739452 intron dpr + chr2R 20741848 intron dpr + chr2R 20744243 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-738 893 chr2R 20756222 20756239 chr2R 20756360 20756387 8 144 5.5 8.5 7.0 1.0 165 chr2R 20756222 intergenic not near genes chr2R 20756304 intergenic not near genes chr2R 20756387 intergenic not near genes chr2R_8_20755001 chr2R_20755001 RAL-738 894 chr2R 20783317 20783330 chr2R 20788089 20788102 F-element 6 4771 1.5 8.5 5.0 1.0 4785 chr2R 20783317 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788102 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-738 895 chr2R 20830539 20830570 chr2R 20830619 20830625 14 76 11.0 7.5 9.2 1.4 86 chr2R 20830539 intron,intron insc -,sktl - chr2R 20830582 intron,intron insc -,sktl - chr2R 20830625 intron,intron insc -,sktl - chr2R_14_20830001 chr2R_20830001 RAL-738 896 chr2R 20842907 20842923 chr2R 20842988 20843006 5 83 5.0 5.5 5.2 0.8 99 chr2R 20842907 intergenic not near genes chr2R 20842956 intergenic not near genes chr2R 20843006 intergenic not near genes chr2R_5_20840001 chr2R_20840001 RAL-738 897 chr2R 20962909 20962939 chr2R 20963006 20963037 13 94 3.5 7.5 5.5 2.0 128 chr2R 20962909 intergenic not near genes chr2R 20962973 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_13_20960001 chr2R_20960001 RAL-738 898 chr2R 21075680 21075710 chr2R 21075767 21075797 15 86 6.0 2.5 4.2 2.9 117 chr2R 21075680 intron Treh + chr2R 21075738 intron Treh + chr2R 21075797 intron Treh + chr2R_15_21075001 chr2R_21075001 RAL-738 899 chr2R 21103541 21103552 chr2R 21103621 21103632 7 79 5.0 3.0 4.0 1.4 91 chr2R 21103541 intron ktub + chr2R 21103586 intron ktub + chr2R 21103632 intron ktub + chr2R_7_21100001 chr2R_21100001 RAL-738 900 chr2R 21111727 21111754 chr2R 21111806 21111835 11 76 7.5 4.5 6.0 1.6 108 chr2R 21111727 intron ktub + chr2R 21111781 intron ktub + chr2R 21111835 intron ktub + chr2R_11_21110001 chr2R_21110001 RAL-738 901 chr2R 21188226 21188237 chr2R 21188307 21188311 7 80 10.5 8.5 9.5 0.7 85 chr2R 21188226 exon tud + chr2R 21188268 intron tud + chr2R 21188311 intron tud + chr2R_7_21185001 chr2R_21185001 RAL-738 902 chr2R 21226393 21226416 chr2R 21226486 21226491 10 89 5.5 4.5 5.0 1.7 98 chr2R 21226393 intron ASPP - chr2R 21226442 intron ASPP - chr2R 21226491 intron ASPP - chr2R_10_21225001 chr2R_21225001 RAL-738 903 chr2R 21380185 21380209 chr2R 21380344 21380360 8 157 3.5 5.0 4.2 1.5 175 chr2R 21380185 intergenic not near genes chr2R 21380272 intergenic not near genes chr2R 21380360 intergenic not near genes chr2R_8_21380001 chr2R_21380001 RAL-738 904 chr2R 21408372 21408381 chr2R 21408464 21408473 4 92 9.0 1.0 5.0 0.7 101 chr2R 21408372 intron Sdc - chr2R 21408422 intron Sdc - chr2R 21408473 intron Sdc - chr2R_4_21405001 chr2R_21405001 RAL-738 905 chr2R 21408386 21408406 chr2R 21408463 21408498 5 85 3.0 1.0 2.0 1.7 112 chr2R 21408386 intron Sdc - chr2R 21408442 intron Sdc - chr2R 21408498 intron Sdc - chr2R_5_21405001 chr2R_21405001 RAL-738 906 chr2R 21422918 21422929 chr2R 21423904 21423915 6 984 4.0 4.0 4.0 1.2 997 chr2R 21422918 intron Sdc - chr2R 21423416 intron Sdc - chr2R 21423915 intron Sdc - chr2R_6_21420001 chr2R_21420001 RAL-738 907 chr2R 21422931 21422941 chr2R 21423903 21423911 6 978 3.0 4.0 3.5 1.3 980 chr2R 21422931 intron Sdc - chr2R 21423421 intron Sdc - chr2R 21423911 intron Sdc - chr2R_6_21420001 chr2R_21420001 RAL-738 908 chr2R 21461458 21461486 chr2R 21461564 21461592 7 105 4.0 0.5 2.2 2.2 134 chr2R 21461458 intron Sdc - chr2R 21461525 intron Sdc - chr2R 21461592 intron Sdc - chr2R_7_21460001 chr2R_21460001 RAL-738 909 chr2R 21700163 21700185 chr2R 21700239 21700258 11 82 5.0 7.0 6.0 1.6 95 chr2R 21700163 intron HmgZ - chr2R 21700210 intron HmgZ - chr2R 21700258 intron HmgZ - chr2R_11_21700001 chr2R_21700001 RAL-738 910 chr2R 21721578 21721606 chr2R 21721666 21721694 15 84 2.0 2.5 2.2 4.7 116 chr2R 21721578 intron LBR + chr2R 21721636 intron LBR + chr2R 21721694 intron LBR + chr2R_15_21720001 chr2R_21720001 RAL-738 911 chr2R 21753082 21753107 chr2R 21753567 21753569 roo 5 477 10.0 3.0 6.5 0.7 487 chr2R 21753082 intergenic not near genes chr2R 21753326 intergenic not near genes chr2R 21753569 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-738 912 chr2R 21759561 21759588 chr2R 21759646 21759653 8 81 4.0 1.5 2.8 2.1 92 chr2R 21759561 intergenic not near genes chr2R 21759607 intergenic not near genes chr2R 21759653 intergenic not near genes chr2R_8_21755001 chr2R_21755001 RAL-738 913 chr2R 21852916 21852930 chr2R 21853015 21853031 8 99 7.5 3.5 5.5 1.2 115 chr2R 21852916 intergenic not near genes chr2R 21852974 intergenic not near genes chr2R 21853031 intergenic not near genes chr2R_8_21850001 chr2R_21850001 RAL-738 914 chr2R 21852933 21852939 chr2R 21853014 21853039 6 90 4.0 3.5 3.8 1.2 106 chr2R 21852933 intergenic not near genes chr2R 21852986 intergenic not near genes chr2R 21853039 intergenic not near genes chr2R_6_21850001 chr2R_21850001 RAL-738 915 chr2R 21863599 21863615 chr2R 21863683 21863701 7 83 0.0 5.5 2.8 1.8 102 chr2R 21863599 intergenic not near genes chr2R 21863650 intergenic not near genes chr2R 21863701 intergenic not near genes chr2R_7_21860001 chr2R_21860001 RAL-738 916 chr2R 21906270 21906301 chr2R 21906371 21906402 8 99 1.5 4.5 3.0 2.0 132 chr2R 21906270 intron Fili + chr2R 21906336 intron Fili + chr2R 21906402 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-738 917 chr2R 22013001 22013007 chr2R 22013090 22013102 6 93 3.5 8.5 6.0 0.9 101 chr2R 22013001 intron CG34370 - chr2R 22013052 intron CG34370 - chr2R 22013102 intron CG34370 - chr2R_6_22010001 chr2R_22010001 RAL-738 918 chr2R 22016064 22016066 chr2R 24975392 24975414 4 2959342 16.5 9.5 13.0 0.3 2959350 chr2R 22016064 intron CG34370 - chr2R 23495739 intergenic not near genes chr2R 24975414 5` UTR CR45252 + chr2R_4_23495001 chr2R_23495001 RAL-738 919 chr2R 22029528 22029533 chr2R 22029606 22029611 5 78 2.0 1.0 1.5 2.0 83 chr2R 22029528 intron CG34370 - chr2R 22029570 intron CG34370 - chr2R 22029611 intron CG34370 - chr2R_5_22025001 chr2R_22025001 RAL-738 920 chr2R 22035543 22035572 chr2R 22035630 22035659 7 84 2.5 5.0 3.8 1.5 116 chr2R 22035543 intron,3` UTR CG34370 -,CG9308 + chr2R 22035601 intron,3` UTR CG34370 -,CG9308 + chr2R 22035659 intron,3` UTR CG34370 -,CG9308 + chr2R_7_22035001 chr2R_22035001 RAL-738 921 chr2R 22072683 22072712 chr2R 22072768 22072797 15 83 2.0 9.5 5.8 2.2 114 chr2R 22072683 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072797 exon CG11474 - chr2R_15_22070001 chr2R_22070001 RAL-738 922 chr2R 22124313 22124334 chr2R 22124402 22124410 11 87 1.5 7.0 4.2 2.1 97 chr2R 22124313 3` UTR mei-S332 + chr2R 22124362 3` UTR mei-S332 + chr2R 22124410 intergenic mei-S332 +,GM130 - chr2R_11_22120001 chr2R_22120001 RAL-738 923 chr2R 22127379 22127385 chr2R 22127436 22127463 5 73 3.0 4.0 3.5 1.1 84 chr2R 22127379 5` UTR GM130 - chr2R 22127421 5` UTR GM130 - chr2R 22127463 5` UTR GM130 - chr2R_5_22125001 chr2R_22125001 RAL-738 924 chr2R 22185673 22185702 chr2R 22185772 22185801 9 99 2.5 0.0 1.2 4.1 128 chr2R 22185673 3` UTR MED16 + chr2R 22185737 3` UTR MED16 + chr2R 22185801 3` UTR MED16 + chr2R_9_22185001 chr2R_22185001 RAL-738 925 chr2R 22287635 22287656 chr2R 22287711 22287732 9 73 3.0 2.5 2.8 2.4 97 chr2R 22287635 intergenic not near genes chr2R 22287684 intergenic not near genes chr2R 22287732 intergenic not near genes chr2R_9_22285001 chr2R_22285001 RAL-738 926 chr2R 22290083 22290102 chr2R 22290167 22290186 7 82 3.0 2.0 2.5 2.0 103 chr2R 22290083 intergenic not near genes chr2R 22290134 intergenic not near genes chr2R 22290186 intergenic not near genes chr2R_7_22290001 chr2R_22290001 RAL-738 927 chr2R 22304980 22304999 chr2R 22305075 22305094 8 95 3.5 3.0 3.2 1.9 114 chr2R 22304980 intron wdp - chr2R 22305037 intron wdp - chr2R 22305094 intron wdp - chr2R_8_22305001 chr2R_22305001 RAL-738 928 chr2R 22349696 22349722 chr2R 22351473 22351506 jockey 16 1781 7.5 4.0 5.8 2.4 1810 chr2R 22349696 intron Liprin-gamma - chr2R 22350601 intron Liprin-gamma - chr2R 22351506 intron Liprin-gamma - chr2R_16_22350001 chr2R_22350001 RAL-738 929 chr2R 22360377 22360416 chr2R 22360810 22360830 jockey 13 428 4.5 3.5 4.0 2.6 453 chr2R 22360377 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_13_22360001 chr2R_22360001 RAL-738 930 chr2R 22599176 22599191 chr2R 22599251 22599285 7 84 5.5 8.0 6.8 0.9 109 chr2R 22599176 intron CG4269 + chr2R 22599230 intron CG4269 + chr2R 22599285 intron CG4269 + chr2R_7_22595001 chr2R_22595001 RAL-738 931 chr2R 22774964 22774978 chr2R 22775383 22775394 jockey 11 417 9.0 3.5 6.2 1.5 430 chr2R 22774964 intron CG42260 - chr2R 22775179 intron CG42260 - chr2R 22775394 intron CG42260 - chr2R_11_22775001 chr2R_22775001 RAL-738 932 chr2R 22774979 22775002 chr2R 22775381 22775421 jockey 20 415 4.0 3.0 3.5 4.4 442 chr2R 22774979 intron CG42260 - chr2R 22775200 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_20_22775001 chr2R_22775001 RAL-738 933 chr2R 22781957 22781987 chr2R 22782144 22782169 6 184 3.0 4.0 3.5 1.3 212 chr2R 22781957 intron CG42260 - chr2R 22782063 intron CG42260 - chr2R 22782169 intron CG42260 - chr2R_6_22780001 chr2R_22780001 RAL-738 934 chr2R 22785728 22785759 chr2R 22785805 22785837 9 77 3.5 0.5 2.0 3.0 109 chr2R 22785728 intron CG42260 - chr2R 22785782 intron CG42260 - chr2R 22785837 intron CG42260 - chr2R_9_22785001 chr2R_22785001 RAL-738 935 chr2R 22843024 22843050 chr2R 22844986 22845012 flea 6 1961 5.0 6.5 5.8 0.9 1988 chr2R 22843024 intergenic CG9826 + chr2R 22844018 intergenic not near genes chr2R 22845012 intergenic not near genes chr2R_6_22840001 chr2R_22840001 RAL-738 936 chr2R 22911553 22911565 chr2R 22911820 22911845 5 301 4.5 16.5 10.5 0.4 292 chr2R 22911553 exon nahoda + chr2R 22911699 exon nahoda + chr2R 22911845 exon nahoda + chr2R_5_22910001 chr2R_22910001 RAL-738 937 chr2R 22945051 22945084 chr2R 22945165 22945198 21 112 9.0 0.0 4.5 3.8 147 chr2R 22945051 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945198 intergenic CG42694 + chr2R_21_22945001 chr2R_22945001 RAL-738 938 chr2R 23052656 23052689 chr2R 23052725 23052765 9 74 4.5 4.5 4.5 1.6 109 chr2R 23052656 intergenic not near genes chr2R 23052710 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_9_23050001 chr2R_23050001 RAL-738 939 chr2R 23054009 23054029 chr2R 23054073 23054075 11 73 3.5 11.0 7.2 1.3 66 chr2R 23054009 intergenic not near genes chr2R 23054042 intergenic not near genes chr2R 23054075 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-738 940 chr2R 23061772 23061788 chr2R 23061866 23061879 5 92 4.5 9.5 7.0 0.6 107 chr2R 23061772 3` UTR l(2)06496 - chr2R 23061826 3` UTR l(2)06496 - chr2R 23061879 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-738 941 chr2R 23070406 23070443 chr2R 23070502 23070539 19 92 5.0 5.5 5.2 3.1 133 chr2R 23070406 intron l(2)k09913 + chr2R 23070472 intron l(2)k09913 + chr2R 23070539 intron l(2)k09913 + chr2R_19_23070001 chr2R_23070001 RAL-738 942 chr2R 23098534 23098536 chr2R 23098691 23098710 4 166 10.0 3.5 6.8 0.5 176 chr2R 23098534 intergenic not near genes chr2R 23098622 intergenic not near genes chr2R 23098710 intergenic not near genes chr2R_4_23095001 chr2R_23095001 RAL-738 943 chr2R 23101298 23101331 chr2R 23101378 23101411 14 77 1.5 5.0 3.2 3.3 113 chr2R 23101298 3` UTR CG42703 - chr2R 23101354 3` UTR CG42703 - chr2R 23101411 exon CG42703 - chr2R_14_23100001 chr2R_23100001 RAL-738 944 chr2R 23158346 23158353 chr2R 23158423 23158430 4 77 11.5 11.0 11.2 0.3 84 chr2R 23158346 intron CG9899 + chr2R 23158388 intron CG9899 + chr2R 23158430 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-738 945 chr2R 23175042 23175068 chr2R 23175115 23175145 10 71 5.0 5.5 5.2 1.6 103 chr2R 23175042 intron CG34371 - chr2R 23175094 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_10_23175001 chr2R_23175001 RAL-738 946 chr2R 23188554 23188590 chr2R 23188632 23188641 10 74 2.0 4.0 3.0 2.5 87 chr2R 23188554 intron CG34371 - chr2R 23188598 intron CG34371 - chr2R 23188641 intron CG34371 - chr2R_10_23185001 chr2R_23185001 RAL-738 947 chr2R 23236823 23236846 chr2R 23236915 23236938 14 90 1.0 0.5 0.8 7.8 115 chr2R 23236823 intergenic not near genes chr2R 23236880 intergenic not near genes chr2R 23236938 intergenic not near genes chr2R_14_23235001 chr2R_23235001 RAL-738 948 chr2R 23291329 23291340 chr2R 23291407 23291417 6 77 4.0 0.5 2.2 1.9 88 chr2R 23291329 3` UTR CR44783 - chr2R 23291373 3` UTR CR44783 - chr2R 23291417 intergenic CR44783 - chr2R_6_23290001 chr2R_23290001 RAL-738 949 chr2R 23337190 23337197 chr2R 23337268 23337272 7 77 6.5 1.5 4.0 1.4 82 chr2R 23337190 intergenic not near genes chr2R 23337231 intergenic not near genes chr2R 23337272 intergenic not near genes chr2R_7_23335001 chr2R_23335001 RAL-738 950 chr2R 23448683 23448694 chr2R 23448938 23448949 6 254 1.5 4.5 3.0 1.5 266 chr2R 23448683 intron CG43795 + chr2R 23448816 intron CG43795 + chr2R 23448949 intron CG43795 + chr2R_6_23445001 chr2R_23445001 RAL-738 951 chr2R 23448695 23448707 chr2R 23448937 23448962 8 250 1.0 4.5 2.8 2.1 267 chr2R 23448695 intron CG43795 + chr2R 23448828 intron CG43795 + chr2R 23448962 intron CG43795 + chr2R_8_23445001 chr2R_23445001 RAL-738 952 chr2R 23500970 23500991 chr2R 23501316 23501330 8 340 5.0 3.5 4.2 1.5 360 chr2R 23500970 intergenic CG13558 + chr2R 23501150 intergenic CG13558 + chr2R 23501330 intergenic not near genes chr2R_8_23500001 chr2R_23500001 RAL-738 953 chr2R 23522438 23522447 chr2R 23522493 23522519 5 64 6.0 6.0 6.0 0.7 81 chr2R 23522438 intron RabX1 - chr2R 23522478 intron RabX1 - chr2R 23522519 intron RabX1 - chr2R_5_23520001 chr2R_23520001 RAL-738 954 chr2R 23653970 23654001 chr2R 23654047 23654078 8 72 7.0 2.5 4.8 1.4 108 chr2R 23653970 3` UTR retn + chr2R 23654024 3` UTR retn + chr2R 23654078 3` UTR retn + chr2R_8_23650001 chr2R_23650001 RAL-738 955 chr2R 23718285 23718295 chr2R 23718432 23718457 8 150 43.5 57.0 50.2 0.2 172 chr2R 23718285 intron Sesn + chr2R 23718371 intron Sesn + chr2R 23718457 intron Sesn + chr2R_8_23715001 chr2R_23715001 RAL-738 956 chr2R 23726231 23726255 chr2R 23726313 23726345 14 85 5.0 7.0 6.0 2.0 114 chr2R 23726231 intron Sesn + chr2R 23726288 intron Sesn + chr2R 23726345 intron Sesn + chr2R_14_23725001 chr2R_23725001 RAL-738 957 chr2R 23821326 23821353 chr2R 23821483 23821510 6 162 18.5 11.0 14.8 0.4 184 chr2R 23821326 intron CG5549 + chr2R 23821418 intron CG5549 + chr2R 23821510 intron CG5549 + chr2R_6_23820001 chr2R_23820001 RAL-738 958 chr2R 23865826 23865857 chr2R 23865908 23865939 13 79 6.5 3.5 5.0 2.2 113 chr2R 23865826 intron CG5569 + chr2R 23865882 intron CG5569 + chr2R 23865939 intron CG5569 + chr2R_13_23865001 chr2R_23865001 RAL-738 959 chr2R 23914314 23914330 chr2R 23921933 23921947 412 7 7618 2.0 12.0 7.0 0.9 7633 chr2R 23914314 exon kcc + chr2R 23918130 intron kcc + chr2R 23921947 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-738 960 chr2R 23986346 23986363 chr2R 23986421 23986439 8 75 11.0 6.5 8.8 0.8 93 chr2R 23986346 exon Phm - chr2R 23986392 exon Phm - chr2R 23986439 intron Phm - chr2R_8_23985001 chr2R_23985001 RAL-738 961 chr2R 23986364 23986546 chr2R 23986419 23986626 29 75 2.5 6.0 4.2 5.6 262 chr2R 23986364 exon Phm - chr2R 23986495 intron Phm - chr2R 23986626 intron,5` UTR Phm -,CG30178 + chr2R_29_23985001 chr2R_23985001 RAL-738 962 chr2R 23987651 23987681 chr2R 23987730 23987759 19 76 5.0 5.0 5.0 3.2 108 chr2R 23987651 exon Phm - chr2R 23987705 intron Phm - chr2R 23987759 intron Phm - chr2R_19_23985001 chr2R_23985001 RAL-738 963 chr2R 24031379 24031413 chr2R 24031463 24031477 23 79 6.0 4.5 5.2 3.7 98 chr2R 24031379 5` UTR CG30172 - chr2R 24031428 intergenic CG30172 -,Chi - chr2R 24031477 intergenic CG30172 -,Chi - chr2R_23_24030001 chr2R_24030001 RAL-738 964 chr2R 24147083 24147097 chr2R 24154645 24154657 412 6 7568 3.0 7.5 5.2 1.0 7574 chr2R 24147083 intron Dat + chr2R 24150870 intron Dat + chr2R 24154657 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-738 965 chr2R 24177234 24177268 chr2R 24184719 24184753 412 13 7483 7.5 4.0 5.8 1.9 7519 chr2R 24177234 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-738 966 chr2R 24209381 24209390 chr2R 24209460 24209465 5 78 20.0 2.5 11.2 0.4 84 chr2R 24209381 intergenic not near genes chr2R 24209423 intergenic not near genes chr2R 24209465 intergenic not near genes chr2R_5_24205001 chr2R_24205001 RAL-738 967 chr2R 24209394 24209415 chr2R 24209459 24209482 8 75 9.0 2.5 5.8 1.2 88 chr2R 24209394 intergenic not near genes chr2R 24209438 intergenic not near genes chr2R 24209482 intergenic not near genes chr2R_8_24205001 chr2R_24205001 RAL-738 968 chr2R 24278325 24278334 chr2R 24278409 24278418 4 84 4.5 9.5 7.0 0.5 93 chr2R 24278325 intron nvy + chr2R 24278372 intron nvy + chr2R 24278418 intron nvy + chr2R_4_24275001 chr2R_24275001 RAL-738 969 chr2R 24278346 24278361 chr2R 24278408 24278409 8 69 1.0 9.5 5.2 1.3 63 chr2R 24278346 intron nvy + chr2R 24278378 intron nvy + chr2R 24278409 intron nvy + chr2R_8_24275001 chr2R_24275001 RAL-738 970 chr2R 24353427 24353459 chr2R 24361789 24361818 roo 12 8361 5.0 7.0 6.0 1.7 8391 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361818 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-738 971 chr2R 24516220 24516233 chr2R 24516387 24516400 7 164 8.0 9.0 8.5 0.7 180 chr2R 24516220 exon Ir60b + chr2R 24516310 exon Ir60b + chr2R 24516400 exon Ir60b + chr2R_7_24515001 chr2R_24515001 RAL-738 972 chr2R 24516234 24516246 chr2R 24516386 24516401 5 158 5.5 9.0 7.2 0.6 167 chr2R 24516234 exon Ir60b + chr2R 24516318 exon Ir60b + chr2R 24516401 exon Ir60b + chr2R_5_24515001 chr2R_24515001 RAL-738 973 chr2R 24647588 24647618 chr2R 24655145 24655175 412 8 7554 7.5 7.5 7.5 0.9 7587 chr2R 24647588 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-738 974 chr2R 24727886 24727915 chr2R 24735393 24735423 mdg1 10 7504 3.0 5.5 4.2 1.9 7537 chr2R 24727886 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-738 975 chr2R 24763609 24763644 chr2R 24765584 24765618 G2 12 1968 3.0 3.0 3.0 3.0 2009 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-738 976 chr2R 24859846 24859851 chr2R 24859932 24859937 4 86 5.5 4.0 4.8 0.7 91 chr2R 24859846 5` UTR CR44829 + chr2R 24859892 5` UTR CR44829 + chr2R 24859937 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-738 977 chr2R 24859859 24859871 chr2R 24859926 24859937 5 69 2.5 2.5 2.5 1.4 78 chr2R 24859859 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859937 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-738 978 chr2R 24884051 24884076 chr2R 24884132 24884158 8 79 2.0 2.0 2.0 2.7 107 chr2R 24884051 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-738 979 chr2R 25017760 25017769 chr2R 25017842 25017852 6 81 19.0 19.0 19.0 0.3 92 chr2R 25017760 intron uzip + chr2R 25017806 intron uzip + chr2R 25017852 intron uzip + chr2R_6_25015001 chr2R_25015001 RAL-738 980 chr2R 25022639 25022672 chr2R 25022723 25022755 12 82 2.0 6.0 4.0 2.4 116 chr2R 25022639 intron uzip + chr2R 25022697 intron uzip + chr2R 25022755 intron uzip + chr2R_12_25020001 chr2R_25020001 RAL-738 981 chr2R 25061347 25061368 chr2R 25061417 25061429 6 76 9.5 4.0 6.8 0.8 82 chr2R 25061347 intergenic not near genes chr2R 25061388 intergenic not near genes chr2R 25061429 intergenic not near genes chr2R_6_25060001 chr2R_25060001 RAL-738 982 chr2R 25081625 25081639 chr2R 25082702 25082725 9 1083 3.5 4.5 4.0 1.8 1100 chr2R 25081625 intron gol - chr2R 25082175 intron gol - chr2R 25082725 intron gol - chr2R_9_25080001 chr2R_25080001 RAL-738 983 chr2R 25101275 25101306 chr2R 25101377 25101404 9 100 4.0 4.0 4.0 1.8 129 chr2R 25101275 intron lov - chr2R 25101340 intron lov - chr2R 25101404 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-738 984 chr2R 25141651 25141684 chr2R 25159341 25159374 roo 12 17689 3.0 5.0 4.0 2.4 17723 chr2R 25141651 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_12_25150001 chr2R_25150001 RAL-738 985 chr2R 25234768 25234798 chr2R 25234846 25234878 19 79 1.5 2.5 2.0 6.3 110 chr2R 25234768 intron CG9380 - chr2R 25234823 intron CG9380 - chr2R 25234878 intron CG9380 - chr2R_19_25230001 chr2R_25230001 RAL-738 986 chr3L 27171 27194 chr3L 27320 27353 8 155 2.5 1.5 2.0 2.7 182 chr3L 27171 intergenic not near genes chr3L 27262 intergenic not near genes chr3L 27353 intergenic not near genes chr3L_8_25001 chr3L_25001 RAL-738 987 chr3L 51385 51416 chr3L 51483 51514 14 97 4.0 4.5 4.2 2.7 129 chr3L 51385 intergenic not near genes chr3L 51450 intergenic not near genes chr3L 51514 intergenic not near genes chr3L_14_50001 chr3L_50001 RAL-738 988 chr3L 110210 110244 chr3L 119377 119411 roo 17 9167 5.0 2.5 3.8 3.5 9201 chr3L 110210 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_17_110001 chr3L_110001 RAL-738 989 chr3L 155780 155812 chr3L 155857 155889 14 77 3.5 3.5 3.5 3.1 109 chr3L 155780 intron p130CAS + chr3L 155834 intron p130CAS + chr3L 155889 intron p130CAS + chr3L_14_155001 chr3L_155001 RAL-738 990 chr3L 391920 391937 chr3L 392013 392030 11 92 1.0 4.0 2.5 3.1 110 chr3L 391920 intron trh - chr3L 391975 intron trh - chr3L 392030 intron,3` UTR trh -,CR45378 - chr3L_11_390001 chr3L_390001 RAL-738 991 chr3L 402708 402718 chr3L 409744 409771 297 6 7046 6.0 8.0 7.0 0.8 7063 chr3L 402708 intergenic not near genes chr3L 406240 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-738 992 chr3L 428196 428215 chr3L 428317 428331 4 120 4.0 0.0 2.0 1.3 135 chr3L 428196 intergenic not near genes chr3L 428264 intergenic not near genes chr3L 428331 intergenic not near genes chr3L_4_425001 chr3L_425001 RAL-738 993 chr3L 470935 470950 chr3L 471153 471177 6 223 5.5 6.0 5.8 0.9 242 chr3L 470935 intron klar - chr3L 471056 intron klar - chr3L 471177 intron klar - chr3L_6_470001 chr3L_470001 RAL-738 994 chr3L 705908 705931 chr3L 706004 706027 10 95 3.5 6.0 4.8 1.7 119 chr3L 705908 intergenic CG13895 -,CR44514 + chr3L 705968 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_10_705001 chr3L_705001 RAL-738 995 chr3L 717909 717915 chr3L 717991 718004 4 87 0.0 11.5 5.8 0.6 95 chr3L 717909 intergenic not near genes chr3L 717956 intergenic not near genes chr3L 718004 intergenic not near genes chr3L_4_715001 chr3L_715001 RAL-738 996 chr3L 789913 789946 chr3L 790398 790419 roo 14 482 3.0 4.5 3.8 2.9 506 chr3L 789913 intergenic not near genes chr3L 790166 intergenic not near genes chr3L 790419 intergenic not near genes chr3L_14_790001 chr3L_790001 RAL-738 997 chr3L 821083 821085 chr3L 821160 821162 4 77 10.5 6.5 8.5 0.4 79 chr3L 821083 5` UTR CR43883 + chr3L 821122 5` UTR CR43883 + chr3L 821162 5` UTR CR43883 + chr3L_4_820001 chr3L_820001 RAL-738 998 chr3L 837542 837575 chr3L 837619 837637 11 71 7.5 8.0 7.8 1.2 95 chr3L 837542 intron CG13901 - chr3L 837590 intron CG13901 - chr3L 837637 intron CG13901 - chr3L_11_835001 chr3L_835001 RAL-738 999 chr3L 843722 843741 chr3L 843803 843822 8 80 8.5 0.0 4.2 1.5 100 chr3L 843722 intergenic Gr61a +,CG13889 + chr3L 843772 intergenic Gr61a +,CG13889 + chr3L 843822 intergenic CG13889 +,Gr61a + chr3L_8_840001 chr3L_840001 RAL-738 1000 chr3L 925174 925202 chr3L 932600 932628 mdg1 5 7426 2.0 0.0 1.0 2.5 7454 chr3L 925174 intron Glut1 + chr3L 928901 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_5_925001 chr3L_925001 RAL-738 1001 chr3L 933909 933943 chr3L 934012 934031 18 101 2.0 6.0 4.0 3.6 122 chr3L 933909 intron Glut1 + chr3L 933970 intron Glut1 + chr3L 934031 intron Glut1 + chr3L_18_930001 chr3L_930001 RAL-738 1002 chr3L 939774 939800 chr3L 940890 940921 jockey 12 1120 11.5 5.0 8.2 1.3 1147 chr3L 939774 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-738 1003 chr3L 961023 961043 chr3L 961116 961136 7 93 6.0 4.0 5.0 1.2 113 chr3L 961023 intron Glut1 + chr3L 961080 intron Glut1 + chr3L 961136 intron Glut1 + chr3L_7_960001 chr3L_960001 RAL-738 1004 chr3L 1015028 1015051 chr3L 1015140 1015157 6 108 8.0 3.0 5.5 0.9 129 chr3L 1015028 intron trio - chr3L 1015092 intron trio - chr3L 1015157 intron trio - chr3L_6_1015001 chr3L_1015001 RAL-738 1005 chr3L 1040548 1040580 chr3L 1040632 1040664 17 83 5.5 3.0 4.2 3.3 116 chr3L 1040548 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040664 intron bab1 - chr3L_17_1040001 chr3L_1040001 RAL-738 1006 chr3L 1103992 1104014 chr3L 1104182 1104205 14 189 3.5 8.0 5.8 2.1 213 chr3L 1103992 intergenic not near genes chr3L 1104098 intergenic not near genes chr3L 1104205 intergenic not near genes chr3L_14_1100001 chr3L_1100001 RAL-738 1007 chr3L 1109632 1109666 chr3L 1109720 1109753 14 84 8.5 3.5 6.0 2.0 121 chr3L 1109632 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109753 intergenic not near genes chr3L_14_1105001 chr3L_1105001 RAL-738 1008 chr3L 1154134 1154157 chr3L 1163284 1163301 roo 9 9147 2.5 3.5 3.0 2.2 9167 chr3L 1154134 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163301 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-738 1009 chr3L 1217893 1217917 chr3L 1218523 1218547 14 628 5.5 3.0 4.2 2.7 654 chr3L 1217893 intron mwh + chr3L 1218220 intron,3` UTR mwh +,LysP - chr3L 1218547 intron,exon mwh +,LysP - chr3L_14_1215001 chr3L_1215001 RAL-738 1010 chr3L 1219602 1219622 chr3L 1227327 1227355 412 11 7732 4.0 4.5 4.2 2.1 7753 chr3L 1219602 intron mwh + chr3L 1223478 intron mwh + chr3L 1227355 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-738 1011 chr3L 1260146 1260164 chr3L 1260226 1260244 7 78 2.0 4.0 3.0 1.8 98 chr3L 1260146 intron CG9134 + chr3L 1260195 intron CG9134 + chr3L 1260244 intron CG9134 + chr3L_7_1260001 chr3L_1260001 RAL-738 1012 chr3L 1265546 1265572 chr3L 1265622 1265635 9 68 3.5 4.0 3.8 1.9 89 chr3L 1265546 intron CG9134 + chr3L 1265590 intron CG9134 + chr3L 1265635 intron CG9134 + chr3L_9_1265001 chr3L_1265001 RAL-738 1013 chr3L 1278809 1278829 chr3L 1278892 1278908 4 78 3.5 5.5 4.5 0.7 99 chr3L 1278809 intron CG32333 + chr3L 1278858 intron CG32333 + chr3L 1278908 intron CG32333 + chr3L_4_1275001 chr3L_1275001 RAL-738 1014 chr3L 1378937 1378971 chr3L 1379014 1379029 9 71 3.0 0.0 1.5 3.6 92 chr3L 1378937 intron,intron Ptp61F -,ru + chr3L 1378983 intron,intron Ptp61F -,ru + chr3L 1379029 intron,intron Ptp61F -,ru + chr3L_9_1375001 chr3L_1375001 RAL-738 1015 chr3L 1463416 1463446 chr3L 1463496 1463496 10 75 4.0 3.5 3.8 2.1 80 chr3L 1463416 intron Ptp61F - chr3L 1463456 intron Ptp61F - chr3L 1463496 intron Ptp61F - chr3L_10_1460001 chr3L_1460001 RAL-738 1016 chr3L 1480995 1481026 chr3L 1481071 1481092 7 76 6.5 2.0 4.2 1.3 97 chr3L 1480995 intron stet - chr3L 1481044 intron stet - chr3L 1481092 intron stet - chr3L_7_1480001 chr3L_1480001 RAL-738 1017 chr3L 1505998 1506033 chr3L 1513595 1513615 17.6 17 7594 2.0 4.5 3.2 4.0 7617 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509806 intron,intron Psa +,cue - chr3L 1513615 intron,intron Psa +,cue - chr3L_17_1505001 chr3L_1505001 RAL-738 1018 chr3L 1569524 1569533 chr3L 1569599 1569609 5 76 5.5 16.5 11.0 0.4 85 chr3L 1569524 5` UTR CG12004 + chr3L 1569566 intron CG12004 + chr3L 1569609 intron CG12004 + chr3L_5_1565001 chr3L_1565001 RAL-738 1019 chr3L 1666528 1666537 chr3L 1666708 1666718 6 180 1.0 14.5 7.8 0.7 190 chr3L 1666528 3` UTR,intron CG7974 +,Uhg7 - chr3L 1666623 intron Uhg7 - chr3L 1666718 intron,3` UTR Uhg7 -,snoRNA:Me28S-A2634b - chr3L_6_1665001 chr3L_1665001 RAL-738 1020 chr3L 1693523 1693539 chr3L 1693607 1693628 8 88 0.0 8.0 4.0 1.6 105 chr3L 1693523 intron CG7991 + chr3L 1693576 intron CG7991 + chr3L 1693628 intron CG7991 + chr3L_8_1690001 chr3L_1690001 RAL-738 1021 chr3L 1740856 1740883 chr3L 1741099 1741111 pogo 5 239 4.0 5.0 4.5 0.9 255 chr3L 1740856 intron Gk + chr3L 1740984 intron Gk + chr3L 1741111 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-738 1022 chr3L 1991120 1991150 chr3L 1991198 1991228 9 75 1.5 2.0 1.8 3.2 108 chr3L 1991120 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991228 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-738 1023 chr3L 2108249 2108278 chr3L 2113453 2113482 copia 11 5204 4.0 3.5 3.8 2.3 5233 chr3L 2108249 intron sls - chr3L 2110866 intron sls - chr3L 2113482 intron sls - chr3L_11_2110001 chr3L_2110001 RAL-738 1024 chr3L 2139207 2139233 chr3L 2139287 2139300 15 78 4.0 10.0 7.0 1.9 93 chr3L 2139207 intron zormin - chr3L 2139254 intron zormin - chr3L 2139300 intron zormin - chr3L_15_2135001 chr3L_2135001 RAL-738 1025 chr3L 2199809 2199820 chr3L 2199885 2199896 6 76 6.5 6.0 6.2 0.8 87 chr3L 2199809 intergenic not near genes chr3L 2199852 intergenic not near genes chr3L 2199896 intergenic not near genes chr3L_6_2195001 chr3L_2195001 RAL-738 1026 chr3L 2219091 2219110 chr3L 2219168 2219177 6 73 3.0 5.0 4.0 1.2 86 chr3L 2219091 intergenic not near genes chr3L 2219134 intergenic not near genes chr3L 2219177 intergenic not near genes chr3L_6_2215001 chr3L_2215001 RAL-738 1027 chr3L 2308006 2308036 chr3L 2308112 2308135 12 103 5.0 6.0 5.5 1.8 129 chr3L 2308006 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308135 intergenic not near genes chr3L_12_2305001 chr3L_2305001 RAL-738 1028 chr3L 2331593 2331605 chr3L 2331670 2331673 4 74 7.5 6.0 6.8 0.5 80 chr3L 2331593 intron MsR1 + chr3L 2331633 intron MsR1 + chr3L 2331673 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-738 1029 chr3L 2344480 2344508 chr3L 2344722 2344750 11 240 3.0 6.5 4.8 1.9 270 chr3L 2344480 3` UTR MsR1 + chr3L 2344615 3` UTR MsR1 + chr3L 2344750 3` UTR MsR1 + chr3L_11_2340001 chr3L_2340001 RAL-738 1030 chr3L 2345106 2345138 chr3L 2345198 2345230 11 90 2.0 4.5 3.2 2.6 124 chr3L 2345106 3` UTR MsR1 + chr3L 2345168 3` UTR MsR1 + chr3L 2345230 3` UTR MsR1 + chr3L_11_2345001 chr3L_2345001 RAL-738 1031 chr3L 2447516 2447533 chr3L 2456663 2456689 roo 5 9153 6.5 7.0 6.8 0.6 9173 chr3L 2447516 intron CG45186 + chr3L 2452102 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-738 1032 chr3L 2533648 2533680 chr3L 2533730 2533736 12 69 7.0 6.5 6.8 1.5 88 chr3L 2533648 intron Spn - chr3L 2533692 intron Spn - chr3L 2533736 intron Spn - chr3L_12_2530001 chr3L_2530001 RAL-738 1033 chr3L 2561526 2561555 chr3L 2561603 2561632 12 77 4.0 3.5 3.8 2.5 106 chr3L 2561526 intron msn - chr3L 2561579 intron msn - chr3L 2561632 intron msn - chr3L_12_2560001 chr3L_2560001 RAL-738 1034 chr3L 2581900 2581913 chr3L 2581993 2582007 7 94 2.0 3.5 2.8 1.8 107 chr3L 2581900 intron msn - chr3L 2581954 intron msn - chr3L 2582007 intron msn - chr3L_7_2580001 chr3L_2580001 RAL-738 1035 chr3L 2590873 2590913 chr3L 2590969 2591008 14 95 4.5 5.0 4.8 2.4 135 chr3L 2590873 intron dos + chr3L 2590940 intron dos + chr3L 2591008 intron dos + chr3L_14_2590001 chr3L_2590001 RAL-738 1036 chr3L 2591907 2591924 chr3L 2592006 2592023 11 97 2.0 8.5 5.2 1.8 116 chr3L 2591907 intron dos + chr3L 2591965 intron dos + chr3L 2592023 intron dos + chr3L_11_2590001 chr3L_2590001 RAL-738 1037 chr3L 2683943 2683975 chr3L 2684019 2684051 16 73 4.5 2.0 3.2 3.8 108 chr3L 2683943 intron Fife - chr3L 2683997 intron Fife - chr3L 2684051 intron Fife - chr3L_16_2680001 chr3L_2680001 RAL-738 1038 chr3L 2705898 2705934 chr3L 2705984 2706021 11 83 4.0 5.5 4.8 1.9 123 chr3L 2705898 intron Fife - chr3L 2705960 intron Fife - chr3L 2706021 intron Fife - chr3L_11_2705001 chr3L_2705001 RAL-738 1039 chr3L 2719540 2719554 chr3L 2719642 2719646 4 98 5.5 3.5 4.5 0.7 106 chr3L 2719540 3` UTR Mrtf - chr3L 2719593 3` UTR Mrtf - chr3L 2719646 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-738 1040 chr3L 2737635 2737651 chr3L 2737719 2737730 9 83 4.5 13.0 8.8 0.9 95 chr3L 2737635 intron Mrtf - chr3L 2737682 intron Mrtf - chr3L 2737730 intron Mrtf - chr3L_9_2735001 chr3L_2735001 RAL-738 1041 chr3L 2747716 2747746 chr3L 2748041 2748071 16 324 5.0 4.5 4.8 2.8 355 chr3L 2747716 intron Mrtf - chr3L 2747894 intron Mrtf - chr3L 2748071 intron Mrtf - chr3L_16_2745001 chr3L_2745001 RAL-738 1042 chr3L 2765145 2765178 chr3L 2765221 2765231 14 70 5.0 4.5 4.8 2.4 86 chr3L 2765145 intron Mrtf - chr3L 2765188 intron Mrtf - chr3L 2765231 intron Mrtf - chr3L_14_2765001 chr3L_2765001 RAL-738 1043 chr3L 2795723 2795745 chr3L 2795846 2795868 4 122 3.5 3.0 3.2 1.0 145 chr3L 2795723 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795868 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-738 1044 chr3L 2854483 2854503 chr3L 2854561 2854580 6 77 7.0 3.0 5.0 1.0 97 chr3L 2854483 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854580 intron CG43444 - chr3L_6_2850001 chr3L_2850001 RAL-738 1045 chr3L 2927843 2927867 chr3L 2936114 2936140 Tirant 8 8273 2.5 2.5 2.5 2.3 8297 chr3L 2927843 intron Shab + chr3L 2931992 intron Shab + chr3L 2936140 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-738 1046 chr3L 3040330 3040337 chr3L 3042113 3042126 S-element 4 1788 6.0 1.0 3.5 0.9 1796 chr3L 3040330 3` UTR CG2162 + chr3L 3041228 intergenic not near genes chr3L 3042126 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-738 1047 chr3L 3159803 3159816 chr3L 3159882 3159895 5 78 3.5 1.5 2.5 1.4 92 chr3L 3159803 intergenic pfk +,NDUFS3 - chr3L 3159849 intergenic pfk +,NDUFS3 - chr3L 3159895 intergenic pfk +,NDUFS3 - chr3L_5_3155001 chr3L_3155001 RAL-738 1048 chr3L 3254089 3254117 chr3L 3254180 3254208 9 91 2.5 6.5 4.5 1.6 119 chr3L 3254089 5` UTR CR43626 + chr3L 3254148 5` UTR CR43626 + chr3L 3254208 5` UTR CR43626 + chr3L_9_3250001 chr3L_3250001 RAL-738 1049 chr3L 3257088 3257117 chr3L 3257265 3257294 8 176 1.0 4.5 2.8 2.1 206 chr3L 3257088 intergenic not near genes chr3L 3257191 intergenic not near genes chr3L 3257294 intergenic not near genes chr3L_8_3255001 chr3L_3255001 RAL-738 1050 chr3L 3259619 3259830 chr3L 3259713 3259930 19 94 0.0 6.0 3.0 4.8 311 chr3L 3259619 intron ckd + chr3L 3259774 intron ckd + chr3L 3259930 intron ckd + chr3L_19_3255001 chr3L_3255001 RAL-738 1051 chr3L 3281445 3281455 chr3L 3281941 3281951 Doc 5 495 7.0 10.5 8.8 0.5 506 chr3L 3281445 intron CG12017 + chr3L 3281698 intron CG12017 + chr3L 3281951 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-738 1052 chr3L 3281457 3281477 chr3L 3281938 3281966 Doc 14 492 3.0 9.0 6.0 2.0 509 chr3L 3281457 intron CG12017 + chr3L 3281712 intron CG12017 + chr3L 3281966 intron CG12017 + chr3L_14_3280001 chr3L_3280001 RAL-738 1053 chr3L 3314138 3314171 chr3L 3314271 3314277 29 128 10.5 12.0 11.2 2.4 139 chr3L 3314138 intergenic ZnT63C +,Drsl2 + chr3L 3314208 intergenic Drsl2 +,ZnT63C + chr3L 3314277 intergenic Drsl2 +,ZnT63C + chr3L_29_3310001 chr3L_3310001 RAL-738 1054 chr3L 3312266 3312290 chr3L 3315548 3315583 12 3286 33.5 33.5 33.5 0.3 3317 chr3L 3312266 exon ZnT63C + chr3L 3313924 3` UTR ZnT63C + chr3L 3315583 intergenic Drsl4 +,Drsl3 + chr3L_12_3310001 chr3L_3310001 RAL-738 1055 chr3L 3315982 3316009 chr3L 3316083 3316096 7 99 3.5 4.5 4.0 1.4 114 chr3L 3315982 intergenic Drsl4 + chr3L 3316039 intergenic Drsl4 + chr3L 3316096 intergenic Drsl4 + chr3L_7_3315001 chr3L_3315001 RAL-738 1056 chr3L 3436288 3436315 chr3L 3436367 3436394 12 79 4.5 4.5 4.5 2.2 106 chr3L 3436288 intron eIF5B - chr3L 3436341 intron eIF5B - chr3L 3436394 intron eIF5B - chr3L_12_3435001 chr3L_3435001 RAL-738 1057 chr3L 3470157 3470182 chr3L 3470233 3470258 4 76 0.5 3.5 2.0 1.3 101 chr3L 3470157 intron CG14971 - chr3L 3470208 intron CG14971 - chr3L 3470258 intron CG14971 - chr3L_4_3470001 chr3L_3470001 RAL-738 1058 chr3L 3475095 3475113 chr3L 3475527 3475555 jockey 8 438 1.5 5.0 3.2 1.9 460 chr3L 3475095 intron CG42324 + chr3L 3475325 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-738 1059 chr3L 3484302 3484307 chr3L 3484393 3484399 5 92 7.5 10.0 8.8 0.5 97 chr3L 3484302 intron,exon CG42324 +,CG43074 - chr3L 3484350 intron,exon CG42324 +,CG43074 - chr3L 3484399 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-738 1060 chr3L 3484308 3484319 chr3L 3484386 3484411 6 88 3.0 7.5 5.2 1.0 103 chr3L 3484308 intron,exon CG42324 +,CG43074 - chr3L 3484360 intron,exon CG42324 +,CG43074 - chr3L 3484411 intron,intron CG42324 +,CG43074 - chr3L_6_3480001 chr3L_3480001 RAL-738 1061 chr3L 3565954 3565960 chr3L 3566027 3566036 4 75 3.5 11.0 7.2 0.5 82 chr3L 3565954 intron Eip63E + chr3L 3565995 intron Eip63E + chr3L 3566036 intron Eip63E + chr3L_4_3565001 chr3L_3565001 RAL-738 1062 chr3L 3565967 3565971 chr3L 3566023 3566045 5 68 2.5 10.0 6.2 0.7 78 chr3L 3565967 intron Eip63E + chr3L 3566006 intron Eip63E + chr3L 3566045 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-738 1063 chr3L 3601308 3601314 chr3L 3606617 3606625 copia 6 5310 8.5 5.5 7.0 0.8 5317 chr3L 3601308 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606625 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-738 1064 chr3L 3601316 3601324 chr3L 3606607 3606635 copia 5 5306 5.5 5.0 5.2 0.8 5319 chr3L 3601316 intron Eip63E + chr3L 3603976 intron Eip63E + chr3L 3606635 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-738 1065 chr3L 3622311 3622335 chr3L 3622390 3622414 5 79 8.0 0.0 4.0 1.0 103 chr3L 3622311 intergenic not near genes chr3L 3622362 intergenic not near genes chr3L 3622414 intergenic not near genes chr3L_5_3620001 chr3L_3620001 RAL-738 1066 chr3L 3766747 3766761 chr3L 3766833 3766847 8 86 1.5 1.5 1.5 3.2 100 chr3L 3766747 intron CG32264 - chr3L 3766797 intron CG32264 - chr3L 3766847 intron CG32264 - chr3L_8_3765001 chr3L_3765001 RAL-738 1067 chr3L 3783272 3783286 chr3L 3783349 3783363 5 77 4.0 4.0 4.0 1.0 91 chr3L 3783272 intron CG32264 - chr3L 3783318 intron CG32264 - chr3L 3783363 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-738 1068 chr3L 3815059 3815064 chr3L 3815140 3815144 5 81 12.5 5.0 8.8 0.5 85 chr3L 3815059 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815102 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815144 intron,intron Scsalpha +,CR43932 - chr3L_5_3815001 chr3L_3815001 RAL-738 1069 chr3L 3815065 3815081 chr3L 3815135 3815156 10 75 5.0 3.5 4.2 1.9 91 chr3L 3815065 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815156 intron,intron Scsalpha +,CR43932 - chr3L_10_3815001 chr3L_3815001 RAL-738 1070 chr3L 3833741 3833770 chr3L 3833982 3834011 pogo 8 240 1.5 2.5 2.0 2.7 270 chr3L 3833741 intron enc + chr3L 3833876 intron enc + chr3L 3834011 intron enc + chr3L_8_3830001 chr3L_3830001 RAL-738 1071 chr3L 3853605 3853639 chr3L 3853697 3853726 16 88 4.5 7.0 5.8 2.4 121 chr3L 3853605 intron Awh + chr3L 3853666 intron Awh + chr3L 3853726 intron Awh + chr3L_16_3850001 chr3L_3850001 RAL-738 1072 chr3L 3877461 3877466 chr3L 3877584 3877589 4 123 0.0 5.0 2.5 1.1 128 chr3L 3877461 intergenic not near genes chr3L 3877525 intergenic not near genes chr3L 3877589 intergenic not near genes chr3L_4_3875001 chr3L_3875001 RAL-738 1073 chr3L 3890962 3890993 chr3L 3891043 3891074 12 81 2.0 0.0 1.0 6.0 112 chr3L 3890962 intergenic not near genes chr3L 3891018 intergenic not near genes chr3L 3891074 intergenic not near genes chr3L_12_3890001 chr3L_3890001 RAL-738 1074 chr3L 3921395 3921425 chr3L 3921659 3921674 18 261 3.5 4.5 4.0 3.6 279 chr3L 3921395 intron Eip63F-1 - chr3L 3921534 intron Eip63F-1 - chr3L 3921674 intron Eip63F-1 - chr3L_18_3920001 chr3L_3920001 RAL-738 1075 chr3L 3935837 3935848 chr3L 3935905 3935926 6 74 2.5 6.5 4.5 1.1 89 chr3L 3935837 5` UTR Eip63F-2 + chr3L 3935882 5` UTR Eip63F-2 + chr3L 3935926 5` UTR Eip63F-2 + chr3L_6_3935001 chr3L_3935001 RAL-738 1076 chr3L 3968043 3968054 chr3L 3968122 3968133 7 79 2.0 0.0 1.0 3.5 90 chr3L 3968043 intergenic not near genes chr3L 3968088 intergenic not near genes chr3L 3968133 intergenic not near genes chr3L_7_3965001 chr3L_3965001 RAL-738 1077 chr3L 4048416 4048449 chr3L 4048508 4048539 16 91 2.0 5.5 3.8 3.3 123 chr3L 4048416 intron CG1136 + chr3L 4048478 intron CG1136 + chr3L 4048539 intron CG1136 + chr3L_16_4045001 chr3L_4045001 RAL-738 1078 chr3L 4058841 4058875 chr3L 4058921 4058955 14 79 5.0 6.5 5.8 2.1 114 chr3L 4058841 3` UTR CG1136 + chr3L 4058898 3` UTR CG1136 + chr3L 4058955 3` UTR CG1136 + chr3L_14_4055001 chr3L_4055001 RAL-738 1079 chr3L 4099371 4099447 chr3L 4099448 4099528 6 92 0.0 0.0 0.0 6.0 157 chr3L 4099371 intron CG14995 - chr3L 4099450 intron CG14995 - chr3L 4099528 intron CG14995 - chr3L_6_4095001 chr3L_4095001 RAL-738 1080 chr3L 4170154 4170167 chr3L 4170232 4170245 5 78 1.5 1.5 1.5 2.0 91 chr3L 4170154 intergenic Ero1L + chr3L 4170200 intergenic Ero1L + chr3L 4170245 intergenic Ero1L + chr3L_5_4170001 chr3L_4170001 RAL-738 1081 chr3L 4477288 4477322 chr3L 4477392 4477426 12 104 2.5 0.0 1.2 5.5 138 chr3L 4477288 intergenic not near genes chr3L 4477357 intergenic not near genes chr3L 4477426 intergenic not near genes chr3L_12_4475001 chr3L_4475001 RAL-738 1082 chr3L 4484740 4484748 chr3L 4484799 4484816 6 73 0.0 3.5 1.8 2.1 76 chr3L 4484740 intergenic CG11350 +,CG13722 - chr3L 4484778 intergenic CG13722 -,CG11350 + chr3L 4484816 intergenic CG13722 -,CG11350 + chr3L_6_4480001 chr3L_4480001 RAL-738 1083 chr3L 4547105 4547136 chr3L 4547370 4547400 15 263 5.5 3.5 4.5 2.7 295 chr3L 4547105 intron CG11357 + chr3L 4547252 intron CG11357 + chr3L 4547400 intron CG11357 + chr3L_15_4545001 chr3L_4545001 RAL-738 1084 chr3L 4597212 4597242 chr3L 4597294 4597324 8 78 4.0 6.5 5.2 1.3 112 chr3L 4597212 intron Src64B - chr3L 4597268 intron Src64B - chr3L 4597324 intron Src64B - chr3L_8_4595001 chr3L_4595001 RAL-738 1085 chr3L 4652571 4652597 chr3L 4652654 4652680 9 82 4.5 2.5 3.5 2.0 109 chr3L 4652571 intron axo - chr3L 4652626 intron axo - chr3L 4652680 intron axo - chr3L_9_4650001 chr3L_4650001 RAL-738 1086 chr3L 4744400 4744425 chr3L 4744480 4744500 9 77 4.5 0.0 2.2 2.8 100 chr3L 4744400 intron RhoGEF64C + chr3L 4744450 intron RhoGEF64C + chr3L 4744500 intron RhoGEF64C + chr3L_9_4740001 chr3L_4740001 RAL-738 1087 chr3L 4778385 4778400 chr3L 4778824 4778829 5 436 2.0 2.0 2.0 1.7 444 chr3L 4778385 intron RhoGEF64C + chr3L 4778607 intron RhoGEF64C + chr3L 4778829 intron RhoGEF64C + chr3L_5_4775001 chr3L_4775001 RAL-738 1088 chr3L 4837888 4837925 chr3L 4837967 4838001 15 77 4.0 3.0 3.5 3.3 113 chr3L 4837888 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838001 3` UTR CG13707 - chr3L_15_4835001 chr3L_4835001 RAL-738 1089 chr3L 4846580 4846603 chr3L 4846676 4846693 10 94 6.0 5.0 5.5 1.5 113 chr3L 4846580 intergenic not near genes chr3L 4846636 intergenic not near genes chr3L 4846693 intergenic not near genes chr3L_10_4845001 chr3L_4845001 RAL-738 1090 chr3L 4858313 4858336 chr3L 4858391 4858408 14 87 6.0 6.5 6.2 1.9 95 chr3L 4858313 intergenic not near genes chr3L 4858360 intergenic not near genes chr3L 4858408 intergenic not near genes chr3L_14_4855001 chr3L_4855001 RAL-738 1091 chr3L 4901130 4901141 chr3L 4907320 4907331 diver 4 6190 6.5 1.5 4.0 0.8 6201 chr3L 4901130 intergenic CG13704 + chr3L 4904230 intergenic not near genes chr3L 4907331 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-738 1092 chr3L 4901142 4901157 chr3L 4907313 4907337 diver 5 6184 4.0 0.5 2.2 1.6 6195 chr3L 4901142 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907337 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-738 1093 chr3L 5045458 5045488 chr3L 5050238 5050269 Doc 15 4780 4.0 8.0 6.0 2.1 4811 chr3L 5045458 intron Con - chr3L 5047864 intron Con - chr3L 5050269 intron Con - chr3L_15_5045001 chr3L_5045001 RAL-738 1094 chr3L 5101206 5101231 chr3L 5101286 5101311 10 80 1.5 6.0 3.8 2.1 105 chr3L 5101206 intergenic not near genes chr3L 5101258 intergenic not near genes chr3L 5101311 intergenic not near genes chr3L_10_5100001 chr3L_5100001 RAL-738 1095 chr3L 5104483 5104511 chr3L 5124617 5124645 14 20134 1.5 4.5 3.0 3.5 20162 chr3L 5104483 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124645 intergenic not near genes chr3L_14_5110001 chr3L_5110001 RAL-738 1096 chr3L 5251863 5251868 chr3L 5251941 5251946 4 78 0.0 5.0 2.5 1.1 83 chr3L 5251863 intron shep - chr3L 5251904 intron shep - chr3L 5251946 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-738 1097 chr3L 5388202 5388233 chr3L 5388523 5388541 17 318 4.5 2.0 3.2 4.0 339 chr3L 5388202 intergenic not near genes chr3L 5388372 intergenic not near genes chr3L 5388541 intergenic not near genes chr3L_17_5385001 chr3L_5385001 RAL-738 1098 chr3L 5396467 5396499 chr3L 5396554 5396586 5 87 1.5 4.0 2.8 1.3 119 chr3L 5396467 intergenic not near genes chr3L 5396526 intergenic not near genes chr3L 5396586 intergenic not near genes chr3L_5_5395001 chr3L_5395001 RAL-738 1099 chr3L 5504560 5504570 chr3L 5504638 5504648 7 78 4.5 0.5 2.5 2.0 88 chr3L 5504560 intron CG34342 - chr3L 5504604 intron CG34342 - chr3L 5504648 intron CG34342 - chr3L_7_5500001 chr3L_5500001 RAL-738 1100 chr3L 5514748 5514763 chr3L 5514825 5514840 5 77 2.5 4.5 3.5 1.1 92 chr3L 5514748 intron Lkr - chr3L 5514794 intron Lkr - chr3L 5514840 intron Lkr - chr3L_5_5510001 chr3L_5510001 RAL-738 1101 chr3L 5537734 5537755 chr3L 5538061 5538097 jockey 8 334 3.5 3.0 3.2 1.9 363 chr3L 5537734 intergenic not near genes chr3L 5537916 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-738 1102 chr3L 5667627 5667648 chr3L 5667707 5667713 5 77 7.5 0.5 4.0 1.0 86 chr3L 5667627 intron sif + chr3L 5667670 intron sif + chr3L 5667713 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-738 1103 chr3L 5716419 5716436 chr3L 5716495 5716512 6 74 3.5 5.5 4.5 1.1 93 chr3L 5716419 intron sif + chr3L 5716466 intron sif + chr3L 5716512 intron sif + chr3L_6_5715001 chr3L_5715001 RAL-738 1104 chr3L 5910035 5910048 chr3L 5910276 5910289 pogo 5 241 9.5 7.5 8.5 0.5 254 chr3L 5910035 intron CG13288 + chr3L 5910162 intron CG13288 + chr3L 5910289 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-738 1105 chr3L 5910049 5910064 chr3L 5910275 5910305 pogo 10 236 2.5 7.5 5.0 1.7 256 chr3L 5910049 intron CG13288 + chr3L 5910177 intron CG13288 + chr3L 5910305 intron CG13288 + chr3L_10_5910001 chr3L_5910001 RAL-738 1106 chr3L 5926339 5926351 chr3L 5926502 5926516 BS 11 167 4.0 5.0 4.5 2.0 177 chr3L 5926339 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926516 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-738 1107 chr3L 5987043 5987159 chr3L 5987124 5987233 17 87 0.5 0.5 0.5 11.3 190 chr3L 5987043 intergenic not near genes chr3L 5987138 intergenic not near genes chr3L 5987233 intergenic not near genes chr3L_17_5985001 chr3L_5985001 RAL-738 1108 chr3L 6001680 6001717 chr3L 6004380 6004417 jockey 14 2700 4.0 0.5 2.2 4.4 2737 chr3L 6001680 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_14_6000001 chr3L_6000001 RAL-738 1109 chr3L 6011191 6011202 chr3L 6011296 6011302 4 101 5.5 5.0 5.2 0.6 111 chr3L 6011191 intron PVRAP + chr3L 6011246 intron PVRAP + chr3L 6011302 intron PVRAP + chr3L_4_6010001 chr3L_6010001 RAL-738 1110 chr3L 6011206 6011222 chr3L 6011294 6011308 10 93 3.5 4.5 4.0 2.0 102 chr3L 6011206 intron PVRAP + chr3L 6011257 intron PVRAP + chr3L 6011308 intron PVRAP + chr3L_10_6010001 chr3L_6010001 RAL-738 1111 chr3L 6028382 6028408 chr3L 6028470 6028506 18 93 2.5 6.5 4.5 3.3 124 chr3L 6028382 intergenic not near genes chr3L 6028444 intergenic not near genes chr3L 6028506 intergenic not near genes chr3L_18_6025001 chr3L_6025001 RAL-738 1112 chr3L 6077786 6077794 chr3L 6077866 6077869 5 79 2.5 0.0 1.2 2.3 83 chr3L 6077786 intron ssp6 + chr3L 6077828 intron ssp6 + chr3L 6077869 intron ssp6 + chr3L_5_6075001 chr3L_6075001 RAL-738 1113 chr3L 6116695 6116723 chr3L 6116779 6116807 16 83 2.5 2.0 2.2 5.0 112 chr3L 6116695 intron Ets65A + chr3L 6116751 intron Ets65A + chr3L 6116807 intron Ets65A + chr3L_16_6115001 chr3L_6115001 RAL-738 1114 chr3L 6119143 6119172 chr3L 6119220 6119249 6 76 0.5 0.5 0.5 4.0 106 chr3L 6119143 exon Ets65A + chr3L 6119196 intron Ets65A + chr3L 6119249 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-738 1115 chr3L 6159867 6159896 chr3L 6159957 6159972 15 88 2.5 1.5 2.0 5.0 105 chr3L 6159867 intergenic not near genes chr3L 6159920 intergenic not near genes chr3L 6159972 intergenic not near genes chr3L_15_6155001 chr3L_6155001 RAL-738 1116 chr3L 6220914 6220924 chr3L 6230066 6230076 roo 4 9152 12.5 10.5 11.5 0.3 9162 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225495 intergenic not near genes chr3L 6230076 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-738 1117 chr3L 6220925 6220948 chr3L 6230064 6230100 roo 13 9149 4.5 10.5 7.5 1.5 9175 chr3L 6220925 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-738 1118 chr3L 6288510 6288535 chr3L 6288611 6288635 6 101 7.0 4.0 5.5 0.9 125 chr3L 6288510 intergenic not near genes chr3L 6288572 intergenic not near genes chr3L 6288635 intergenic not near genes chr3L_6_6285001 chr3L_6285001 RAL-738 1119 chr3L 6405656 6405688 chr3L 6432120 6432152 roo 9 26462 5.5 5.5 5.5 1.4 26496 chr3L 6405656 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432152 intron CG42747 + chr3L_9_6415001 chr3L_6415001 RAL-738 1120 chr3L 6442148 6442184 chr3L 6442367 6442398 14 217 41.5 40.5 41.0 0.3 250 chr3L 6442148 intron CG42747 + chr3L 6442273 intron CG42747 + chr3L 6442398 intron CG42747 + chr3L_14_6440001 chr3L_6440001 RAL-738 1121 chr3L 6466020 6466050 chr3L 6466105 6466135 10 83 2.5 2.0 2.2 3.1 115 chr3L 6466020 intron CG42747 + chr3L 6466078 intron CG42747 + chr3L 6466135 intron CG42747 + chr3L_10_6465001 chr3L_6465001 RAL-738 1122 chr3L 6562837 6562867 chr3L 6562917 6562947 11 80 4.0 2.0 3.0 2.8 110 chr3L 6562837 intron CG18769 + chr3L 6562892 intron CG18769 + chr3L 6562947 intron CG18769 + chr3L_11_6560001 chr3L_6560001 RAL-738 1123 chr3L 6604289 6604294 chr3L 6604366 6604371 5 77 0.0 8.0 4.0 1.0 82 chr3L 6604289 intron CG8368 + chr3L 6604330 intron CG8368 + chr3L 6604371 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-738 1124 chr3L 6604296 6604301 chr3L 6604344 6604378 5 70 0.0 3.0 1.5 2.0 82 chr3L 6604296 intron CG8368 + chr3L 6604337 intron CG8368 + chr3L 6604378 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-738 1125 chr3L 6659328 6659351 chr3L 6659404 6659428 7 75 2.5 5.0 3.8 1.5 100 chr3L 6659328 intergenic not near genes chr3L 6659378 intergenic not near genes chr3L 6659428 intergenic not near genes chr3L_7_6655001 chr3L_6655001 RAL-738 1126 chr3L 6668964 6668996 chr3L 6669045 6669077 22 78 3.5 0.5 2.0 7.3 113 chr3L 6668964 intergenic not near genes chr3L 6669020 intergenic not near genes chr3L 6669077 intergenic not near genes chr3L_22_6665001 chr3L_6665001 RAL-738 1127 chr3L 6781119 6781134 chr3L 6783132 6783147 Doc 7 2013 7.0 5.0 6.0 1.0 2028 chr3L 6781119 intergenic not near genes chr3L 6782133 intergenic not near genes chr3L 6783147 intergenic not near genes chr3L_7_6780001 chr3L_6780001 RAL-738 1128 chr3L 6781136 6781155 chr3L 6783129 6783168 Doc 10 2009 3.0 4.5 3.8 2.1 2032 chr3L 6781136 intergenic not near genes chr3L 6782152 intergenic not near genes chr3L 6783168 intergenic not near genes chr3L_10_6780001 chr3L_6780001 RAL-738 1129 chr3L 6855940 6855954 chr3L 6860724 6860739 Doc 4 4782 3.5 4.5 4.0 0.8 4799 chr3L 6855940 intergenic not near genes chr3L 6858340 intergenic not near genes chr3L 6860739 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-738 1130 chr3L 6868730 6868740 chr3L 6868808 6868818 8 78 1.5 3.0 2.2 2.5 88 chr3L 6868730 intergenic not near genes chr3L 6868774 intergenic not near genes chr3L 6868818 intergenic not near genes chr3L_8_6865001 chr3L_6865001 RAL-738 1131 chr3L 6934336 6934364 chr3L 6934447 6934466 6 110 4.0 4.5 4.2 1.2 130 chr3L 6934336 exon CG14820 + chr3L 6934401 intron CG14820 + chr3L 6934466 intron CG14820 + chr3L_6_6930001 chr3L_6930001 RAL-738 1132 chr3L 6963565 6963600 chr3L 6963649 6963685 12 77 4.5 6.0 5.2 1.9 120 chr3L 6963565 intron sgl - chr3L 6963625 intron sgl - chr3L 6963685 intron sgl - chr3L_12_6960001 chr3L_6960001 RAL-738 1133 chr3L 6974505 6974525 chr3L 6974592 6974603 18 96 0.5 7.0 3.8 3.8 98 chr3L 6974505 intron Galphai - chr3L 6974554 intron Galphai - chr3L 6974603 intron Galphai - chr3L_18_6970001 chr3L_6970001 RAL-738 1134 chr3L 6990723 6990750 chr3L 6990803 6990830 4 80 3.0 6.0 4.5 0.7 107 chr3L 6990723 5` UTR bin + chr3L 6990776 5` UTR bin + chr3L 6990830 5` UTR bin + chr3L_4_6990001 chr3L_6990001 RAL-738 1135 chr3L 7033171 7033205 chr3L 7033251 7033285 14 76 4.0 8.0 6.0 2.0 114 chr3L 7033171 intron Mp + chr3L 7033228 intron Mp + chr3L 7033285 intron Mp + chr3L_14_7030001 chr3L_7030001 RAL-738 1136 chr3L 7100436 7100464 chr3L 7100523 7100551 9 85 5.0 2.0 3.5 2.0 115 chr3L 7100436 intron form3 + chr3L 7100494 intron form3 + chr3L 7100551 intron form3 + chr3L_9_7100001 chr3L_7100001 RAL-738 1137 chr3L 7150881 7150901 chr3L 7150951 7150976 8 74 2.5 4.5 3.5 1.8 95 chr3L 7150881 intron corn - chr3L 7150928 intron corn - chr3L 7150976 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-738 1138 chr3L 7209015 7209041 chr3L 7209091 7209168 11 96 0.0 4.0 2.0 3.7 153 chr3L 7209015 intergenic not near genes chr3L 7209092 intergenic not near genes chr3L 7209168 intergenic not near genes chr3L_11_7205001 chr3L_7205001 RAL-738 1139 chr3L 7232953 7232986 chr3L 7233045 7233080 25 92 4.5 5.5 5.0 4.2 127 chr3L 7232953 intergenic not near genes chr3L 7233016 intergenic not near genes chr3L 7233080 intergenic not near genes chr3L_25_7230001 chr3L_7230001 RAL-738 1140 chr3L 7377317 7377344 chr3L 7380422 7380449 297 11 3105 2.5 4.5 3.5 2.4 3132 chr3L 7377317 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380449 intron SMSr - chr3L_11_7375001 chr3L_7375001 RAL-738 1141 chr3L 7444025 7444048 chr3L 7444118 7444147 6 98 4.0 0.0 2.0 2.0 122 chr3L 7444025 intron CG42458 + chr3L 7444086 intron CG42458 + chr3L 7444147 intron CG42458 + chr3L_6_7440001 chr3L_7440001 RAL-738 1142 chr3L 7450687 7450713 chr3L 7450770 7450796 7 83 3.0 1.0 2.0 2.3 109 chr3L 7450687 intron CG42458 + chr3L 7450742 intron CG42458 + chr3L 7450796 intron CG42458 + chr3L_7_7450001 chr3L_7450001 RAL-738 1143 chr3L 7498759 7498792 chr3L 7503535 7503569 F-element 13 4776 6.0 5.0 5.5 2.0 4810 chr3L 7498759 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503569 intergenic not near genes chr3L_13_7500001 chr3L_7500001 RAL-738 1144 chr3L 7505416 7505439 chr3L 7505492 7505514 4 76 2.0 2.5 2.2 1.2 98 chr3L 7505416 intergenic CG7548 - chr3L 7505465 intergenic CG7548 - chr3L 7505514 intergenic CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-738 1145 chr3L 7508689 7508696 chr3L 7508771 7508773 5 82 4.0 5.5 4.8 0.9 84 chr3L 7508689 intergenic not near genes chr3L 7508731 intergenic not near genes chr3L 7508773 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-738 1146 chr3L 7540095 7540118 chr3L 7540206 7540229 8 111 3.0 1.5 2.2 2.5 134 chr3L 7540095 intergenic lqf +,CG32374 -,CG16998 - chr3L 7540162 intergenic CG32374 -,lqf +,CG16998 - chr3L 7540229 intergenic CG32374 -,lqf +,CG16998 - chr3L_8_7540001 chr3L_7540001 RAL-738 1147 chr3L 7572289 7572290 chr3L 7572369 7572377 5 85 9.0 0.5 4.8 0.9 88 chr3L 7572289 intergenic not near genes chr3L 7572333 intergenic not near genes chr3L 7572377 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-738 1148 chr3L 7572292 7572313 chr3L 7572367 7572399 11 83 5.0 0.0 2.5 3.1 107 chr3L 7572292 intergenic not near genes chr3L 7572346 intergenic not near genes chr3L 7572399 intergenic not near genes chr3L_11_7570001 chr3L_7570001 RAL-738 1149 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 14.5 28.0 21.2 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-738 1150 chr3L 7792052 7792070 chr3L 7792136 7792148 8 78 10.0 1.0 5.5 1.2 96 chr3L 7792052 intron CG32369 - chr3L 7792100 intron CG32369 - chr3L 7792148 intron CG32369 - chr3L_8_7790001 chr3L_7790001 RAL-738 1151 chr3L 7793711 7793737 chr3L 7800763 7800789 297 15 7052 6.0 3.0 4.5 2.7 7078 chr3L 7793711 intron CG32369 - chr3L 7797250 intron CG32369 - chr3L 7800789 intron CG32369 - chr3L_15_7795001 chr3L_7795001 RAL-738 1152 chr3L 7886525 7886545 chr3L 7889033 7889063 Stalker4 9 2516 1.0 4.5 2.8 2.4 2538 chr3L 7886525 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-738 1153 chr3L 7916001 7916121 chr3L 7916111 7916280 11 141 0.0 0.0 0.0 11.0 279 chr3L 7916001 intergenic CG32368 + chr3L 7916140 intergenic CG32368 + chr3L 7916280 intergenic syd -,CG32368 + chr3L_11_7915001 chr3L_7915001 RAL-738 1154 chr3L 7916843 7916860 chr3L 7926005 7926031 roo 4 9169 3.5 6.5 5.0 0.7 9188 chr3L 7916843 3` UTR syd - chr3L 7921437 intron syd - chr3L 7926031 3` UTR syd - chr3L_4_7920001 chr3L_7920001 RAL-738 1155 chr3L 7939455 7939469 chr3L 7939537 7939551 4 82 1.0 4.0 2.5 1.1 96 chr3L 7939455 intergenic not near genes chr3L 7939503 intergenic not near genes chr3L 7939551 intergenic not near genes chr3L_4_7935001 chr3L_7935001 RAL-738 1156 chr3L 7985361 7985393 chr3L 7987689 7987721 NOF 18 2326 2.0 5.5 3.8 3.8 2360 chr3L 7985361 intron nmo + chr3L 7986541 intron nmo + chr3L 7987721 intron nmo + chr3L_18_7985001 chr3L_7985001 RAL-738 1157 chr3L 8075361 8075387 chr3L 8075445 8075473 8 85 1.0 4.5 2.8 2.1 112 chr3L 8075361 intron Ect4 + chr3L 8075417 intron Ect4 + chr3L 8075473 intron Ect4 + chr3L_8_8075001 chr3L_8075001 RAL-738 1158 chr3L 8226720 8226748 chr3L 8226819 8226847 4 97 0.0 0.0 0.0 4.0 127 chr3L 8226720 intergenic not near genes chr3L 8226784 intergenic not near genes chr3L 8226847 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-738 1159 chr3L 8295791 8295825 chr3L 8295949 8295983 13 157 4.5 5.5 5.0 2.2 192 chr3L 8295791 intergenic CG7201 - chr3L 8295887 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_13_8295001 chr3L_8295001 RAL-738 1160 chr3L 8591264 8591274 chr3L 8591387 8591396 4 126 6.0 5.0 5.5 0.6 132 chr3L 8591264 intron CG43078 + chr3L 8591330 intron CG43078 + chr3L 8591396 intron CG43078 + chr3L_4_8590001 chr3L_8590001 RAL-738 1161 chr3L 8591278 8591284 chr3L 8591385 8591420 6 118 3.0 5.0 4.0 1.2 142 chr3L 8591278 intron CG43078 + chr3L 8591349 intron CG43078 + chr3L 8591420 intron CG43078 + chr3L_6_8590001 chr3L_8590001 RAL-738 1162 chr3L 8644643 8644658 chr3L 8644706 8644731 6 66 2.5 7.5 5.0 1.0 88 chr3L 8644643 intergenic CG13305 - chr3L 8644687 intergenic CG13305 - chr3L 8644731 intergenic CG13305 - chr3L_6_8640001 chr3L_8640001 RAL-738 1163 chr3L 8690602 8690612 chr3L 8690849 8690853 6 245 11.5 6.5 9.0 0.6 251 chr3L 8690602 intergenic not near genes chr3L 8690728 intergenic not near genes chr3L 8690853 intergenic not near genes chr3L_6_8690001 chr3L_8690001 RAL-738 1164 chr3L 8690617 8690632 chr3L 8690846 8690877 16 240 4.5 4.5 4.5 2.9 260 chr3L 8690617 intergenic not near genes chr3L 8690747 intergenic not near genes chr3L 8690877 intergenic not near genes chr3L_16_8690001 chr3L_8690001 RAL-738 1165 chr3L 8782128 8782143 chr3L 8782254 8782269 10 125 10.0 8.5 9.2 1.0 141 chr3L 8782128 intron Fhos + chr3L 8782198 intron Fhos + chr3L 8782269 intron Fhos + chr3L_10_8780001 chr3L_8780001 RAL-738 1166 chr3L 8782145 8782154 chr3L 8782253 8782272 7 120 6.0 8.0 7.0 0.9 127 chr3L 8782145 intron Fhos + chr3L 8782208 intron Fhos + chr3L 8782272 intron Fhos + chr3L_7_8780001 chr3L_8780001 RAL-738 1167 chr3L 8791283 8791299 chr3L 8796691 8796719 I-element 9 5418 7.5 8.0 7.8 1.0 5436 chr3L 8791283 exon Fhos + chr3L 8794001 intron Fhos + chr3L 8796719 intron Fhos + chr3L_9_8790001 chr3L_8790001 RAL-738 1168 chr3L 8928276 8928284 chr3L 8928352 8928353 4 74 4.0 5.0 4.5 0.7 77 chr3L 8928276 intron Tsp66E + chr3L 8928314 intron Tsp66E + chr3L 8928353 intron Tsp66E + chr3L_4_8925001 chr3L_8925001 RAL-738 1169 chr3L 8937293 8937315 chr3L 8937618 8937640 7 325 4.0 3.5 3.8 1.5 347 chr3L 8937293 intron,3` UTR CG43783 -,orb2 - chr3L 8937466 intron,3` UTR CG43783 -,orb2 - chr3L 8937640 intron,3` UTR CG43783 -,orb2 - chr3L_7_8935001 chr3L_8935001 RAL-738 1170 chr3L 9009956 9009977 chr3L 9010060 9010081 4 104 2.0 4.0 3.0 1.0 125 chr3L 9009956 intergenic CG5194 - chr3L 9010018 intergenic CG5194 - chr3L 9010081 intergenic CG5194 - chr3L_4_9010001 chr3L_9010001 RAL-738 1171 chr3L 9076927 9076951 chr3L 9084487 9084505 412 19 7558 9.5 5.0 7.2 2.3 7578 chr3L 9076927 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084505 exon Tequila + chr3L_19_9080001 chr3L_9080001 RAL-738 1172 chr3L 9130559 9130575 chr3L 9134320 9134327 412 10 3760 8.5 4.5 6.5 1.3 3768 chr3L 9130559 intergenic bol - chr3L 9132443 intergenic not near genes chr3L 9134327 intergenic Dhpr + chr3L_10_9130001 chr3L_9130001 RAL-738 1173 chr3L 9164693 9164730 chr3L 9166160 9166197 hobo 7 1463 2.5 2.5 2.5 2.0 1504 chr3L 9164693 intron Rdl - chr3L 9165445 intron Rdl - chr3L 9166197 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-738 1174 chr3L 9191878 9191907 chr3L 9191963 9191997 9 84 7.5 5.5 6.5 1.2 119 chr3L 9191878 intergenic not near genes chr3L 9191938 intergenic not near genes chr3L 9191997 intergenic not near genes chr3L_9_9190001 chr3L_9190001 RAL-738 1175 chr3L 9219248 9219266 chr3L 9219912 9219921 jockey 8 664 11.5 5.0 8.2 0.9 673 chr3L 9219248 intergenic not near genes chr3L 9219584 intergenic not near genes chr3L 9219921 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-738 1176 chr3L 9219267 9219280 chr3L 9219911 9219926 jockey 8 652 6.0 4.5 5.2 1.3 659 chr3L 9219267 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-738 1177 chr3L 9241143 9241154 chr3L 9241222 9241234 4 80 4.0 8.0 6.0 0.6 91 chr3L 9241143 intergenic not near genes chr3L 9241188 intergenic not near genes chr3L 9241234 intergenic not near genes chr3L_4_9240001 chr3L_9240001 RAL-738 1178 chr3L 9269651 9269656 chr3L 9269718 9269737 4 74 6.0 3.0 4.5 0.7 86 chr3L 9269651 intron GluRIB + chr3L 9269694 intron GluRIB + chr3L 9269737 intron GluRIB + chr3L_4_9265001 chr3L_9265001 RAL-738 1179 chr3L 9443512 9443544 chr3L 9445299 9445331 S-element 12 1786 1.5 7.5 4.5 2.2 1819 chr3L 9443512 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_12_9440001 chr3L_9440001 RAL-738 1180 chr3L 9502614 9502642 chr3L 9502694 9502722 10 79 3.0 2.0 2.5 2.9 108 chr3L 9502614 intron path - chr3L 9502668 intron path - chr3L 9502722 intron path - chr3L_10_9500001 chr3L_9500001 RAL-738 1181 chr3L 9571901 9571935 chr3L 9572249 9572283 jockey 10 348 1.5 7.0 4.2 1.9 382 chr3L 9571901 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572283 intron CG42673 + chr3L_10_9570001 chr3L_9570001 RAL-738 1182 chr3L 9575921 9575943 chr3L 9581001 9581018 jockey 5 5079 6.0 8.0 7.0 0.6 5097 chr3L 9575921 intron CG42673 + chr3L 9578470 intron CG42673 + chr3L 9581018 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-738 1183 chr3L 9629739 9629768 chr3L 9629815 9629844 11 76 2.5 3.0 2.8 2.9 105 chr3L 9629739 intron CG8336 + chr3L 9629792 intron CG8336 + chr3L 9629844 intron CG8336 + chr3L_11_9625001 chr3L_9625001 RAL-738 1184 chr3L 9646472 9646500 chr3L 9646597 9646600 7 114 7.5 0.5 4.0 1.4 128 chr3L 9646472 intron,intron fry -,CG33696 + chr3L 9646536 intron,intron fry -,CG33696 + chr3L 9646600 intron,intron fry -,CG33696 + chr3L_7_9645001 chr3L_9645001 RAL-738 1185 chr3L 9817631 9817647 chr3L 9817711 9817727 5 80 0.5 3.0 1.8 1.8 96 chr3L 9817631 intron CG43897 + chr3L 9817679 intron CG43897 + chr3L 9817727 intron CG43897 + chr3L_5_9815001 chr3L_9815001 RAL-738 1186 chr3L 9824154 9824178 chr3L 9824233 9824257 8 79 3.5 0.0 1.8 2.9 103 chr3L 9824154 intron CG43897 + chr3L 9824206 intron CG43897 + chr3L 9824257 intron CG43897 + chr3L_8_9820001 chr3L_9820001 RAL-738 1187 chr3L 9829051 9829077 chr3L 9829133 9829159 8 80 4.5 7.5 6.0 1.1 108 chr3L 9829051 intron CG43897 + chr3L 9829105 intron CG43897 + chr3L 9829159 intron CG43897 + chr3L_8_9825001 chr3L_9825001 RAL-738 1188 chr3L 9922284 9922318 chr3L 9922366 9922400 13 76 6.5 6.0 6.2 1.8 116 chr3L 9922284 intron CG34356 + chr3L 9922342 intron CG34356 + chr3L 9922400 intron CG34356 + chr3L_13_9920001 chr3L_9920001 RAL-738 1189 chr3L 9929673 9929701 chr3L 9938453 9938476 roo 9 8778 5.0 7.5 6.2 1.2 8803 chr3L 9929673 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-738 1190 chr3L 10011593 10011623 chr3L 10011675 10011705 15 81 3.5 4.0 3.8 3.1 112 chr3L 10011593 intron dpr6 + chr3L 10011649 intron dpr6 + chr3L 10011705 intron dpr6 + chr3L_15_10010001 chr3L_10010001 RAL-738 1191 chr3L 10032560 10032568 chr3L 10032636 10032654 5 85 0.0 2.0 1.0 2.5 94 chr3L 10032560 intron dpr6 + chr3L 10032607 intron dpr6 + chr3L 10032654 intron dpr6 + chr3L_5_10030001 chr3L_10030001 RAL-738 1192 chr3L 10111612 10111633 chr3L 10111690 10111694 4 69 3.0 2.5 2.8 1.1 82 chr3L 10111612 intron dpr6 + chr3L 10111653 intron dpr6 + chr3L 10111694 intron dpr6 + chr3L_4_10110001 chr3L_10110001 RAL-738 1193 chr3L 10214731 10214827 chr3L 10214818 10214928 16 88 0.0 0.0 0.0 16.0 197 chr3L 10214731 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214928 intergenic not near genes chr3L_16_10210001 chr3L_10210001 RAL-738 1194 chr3L 10219777 10219810 chr3L 10220289 10220322 13 509 9.5 5.5 7.5 1.5 545 chr3L 10219777 exon CG32055 - chr3L 10220050 exon CG32055 - chr3L 10220322 intergenic CG32055 -,scramb1 - chr3L_13_10220001 chr3L_10220001 RAL-738 1195 chr3L 10250332 10250358 chr3L 10250423 10250449 11 89 1.5 4.0 2.8 2.9 117 chr3L 10250332 intergenic not near genes chr3L 10250390 intergenic not near genes chr3L 10250449 intergenic not near genes chr3L_11_10250001 chr3L_10250001 RAL-738 1196 chr3L 10298667 10298698 chr3L 10298754 10298785 14 85 1.5 2.5 2.0 4.7 118 chr3L 10298667 intergenic not near genes chr3L 10298726 intergenic not near genes chr3L 10298785 intergenic not near genes chr3L_14_10295001 chr3L_10295001 RAL-738 1197 chr3L 10308751 10308774 chr3L 10308814 10308846 10 68 2.0 1.5 1.8 3.6 95 chr3L 10308751 intergenic not near genes chr3L 10308798 intergenic not near genes chr3L 10308846 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-738 1198 chr3L 10328116 10328128 chr3L 10328228 10328240 5 112 5.0 6.5 5.8 0.7 124 chr3L 10328116 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328240 intergenic not near genes chr3L_5_10325001 chr3L_10325001 RAL-738 1199 chr3L 10348653 10348675 chr3L 10348770 10348792 13 117 2.5 1.0 1.8 4.6 139 chr3L 10348653 intron CR44327 + chr3L 10348722 intron CR44327 + chr3L 10348792 intron CR44327 + chr3L_13_10345001 chr3L_10345001 RAL-738 1200 chr3L 10386390 10386418 chr3L 10386467 10386495 7 75 3.0 5.5 4.2 1.3 105 chr3L 10386390 intergenic CR45245 + chr3L 10386442 intergenic CR45245 + chr3L 10386495 5` UTR CR45245 + chr3L_7_10385001 chr3L_10385001 RAL-738 1201 chr3L 10414941 10414978 chr3L 10417313 10417333 Doc 14 2368 2.0 4.5 3.2 3.3 2392 chr3L 10414941 intergenic CG12362 + chr3L 10416137 intergenic not near genes chr3L 10417333 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-738 1202 chr3L 10417568 10417604 chr3L 10417645 10417681 18 69 5.0 5.0 5.0 3.0 113 chr3L 10417568 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417681 intergenic not near genes chr3L_18_10415001 chr3L_10415001 RAL-738 1203 chr3L 10518589 10518609 chr3L 10518724 10518744 8 135 5.0 2.0 3.5 1.8 155 chr3L 10518589 intron A2bp1 + chr3L 10518666 intron A2bp1 + chr3L 10518744 intron A2bp1 + chr3L_8_10515001 chr3L_10515001 RAL-738 1204 chr3L 10551460 10551491 chr3L 10551547 10551578 12 86 1.0 2.5 1.8 4.3 118 chr3L 10551460 intron A2bp1 + chr3L 10551519 intron A2bp1 + chr3L 10551578 intron A2bp1 + chr3L_12_10550001 chr3L_10550001 RAL-738 1205 chr3L 10583699 10583713 chr3L 10583796 10583810 8 97 2.0 6.5 4.2 1.5 111 chr3L 10583699 intron A2bp1 + chr3L 10583754 intron A2bp1 + chr3L 10583810 intron A2bp1 + chr3L_8_10580001 chr3L_10580001 RAL-738 1206 chr3L 10600456 10600472 chr3L 10600538 10600543 9 81 3.0 1.5 2.2 2.8 87 chr3L 10600456 intergenic not near genes chr3L 10600500 intergenic not near genes chr3L 10600543 intergenic not near genes chr3L_9_10600001 chr3L_10600001 RAL-738 1207 chr3L 10601212 10601226 chr3L 10601300 10601302 7 87 2.5 3.5 3.0 1.8 90 chr3L 10601212 intergenic not near genes chr3L 10601257 intergenic not near genes chr3L 10601302 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-738 1208 chr3L 10617280 10617315 chr3L 10617705 10617735 10 420 3.0 4.0 3.5 2.2 455 chr3L 10617280 intergenic not near genes chr3L 10617508 intergenic not near genes chr3L 10617735 intergenic not near genes chr3L_10_10615001 chr3L_10615001 RAL-738 1209 chr3L 10621849 10621857 chr3L 10621936 10621944 4 87 4.5 2.5 3.5 0.9 95 chr3L 10621849 intergenic not near genes chr3L 10621896 intergenic not near genes chr3L 10621944 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-738 1210 chr3L 10621858 10621875 chr3L 10621932 10621962 7 83 3.5 2.5 3.0 1.8 104 chr3L 10621858 intergenic not near genes chr3L 10621910 intergenic not near genes chr3L 10621962 intergenic not near genes chr3L_7_10620001 chr3L_10620001 RAL-738 1211 chr3L 10658079 10658096 chr3L 10658156 10658173 6 76 1.5 2.0 1.8 2.1 94 chr3L 10658079 intron CG32066 - chr3L 10658126 intron CG32066 - chr3L 10658173 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-738 1212 chr3L 10658097 10658209 chr3L 10658155 10658336 19 111 2.0 2.0 2.0 6.3 239 chr3L 10658097 intron CG32066 - chr3L 10658216 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_19_10655001 chr3L_10655001 RAL-738 1213 chr3L 10762836 10762864 chr3L 10762913 10762931 9 77 4.0 2.0 3.0 2.2 95 chr3L 10762836 intergenic not near genes chr3L 10762884 intergenic not near genes chr3L 10762931 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-738 1214 chr3L 10820503 10820521 chr3L 10820662 10820680 8 158 0.0 4.5 2.2 2.5 177 chr3L 10820503 intergenic not near genes chr3L 10820592 intergenic not near genes chr3L 10820680 intergenic not near genes chr3L_8_10820001 chr3L_10820001 RAL-738 1215 chr3L 10870844 10870878 chr3L 10870932 10870960 14 82 5.0 10.0 7.5 1.6 116 chr3L 10870844 exon tna + chr3L 10870902 intron tna + chr3L 10870960 intron tna + chr3L_14_10870001 chr3L_10870001 RAL-738 1216 chr3L 10891881 10891908 chr3L 10891958 10891984 8 77 2.5 3.5 3.0 2.0 103 chr3L 10891881 intron Cpr67Fa2 + chr3L 10891932 intron Cpr67Fa2 + chr3L 10891984 intron Cpr67Fa2 + chr3L_8_10890001 chr3L_10890001 RAL-738 1217 chr3L 10914320 10914330 chr3L 10914401 10914411 6 81 0.5 0.0 0.2 5.0 91 chr3L 10914320 intergenic not near genes chr3L 10914366 intergenic not near genes chr3L 10914411 intergenic not near genes chr3L_6_10910001 chr3L_10910001 RAL-738 1218 chr3L 10924706 10924727 chr3L 10924805 10924826 6 98 4.5 3.0 3.8 1.2 120 chr3L 10924706 intergenic not near genes chr3L 10924766 intergenic not near genes chr3L 10924826 intergenic not near genes chr3L_6_10920001 chr3L_10920001 RAL-738 1219 chr3L 10956452 10956469 chr3L 10956570 10956587 7 117 3.5 6.0 4.8 1.2 135 chr3L 10956452 intergenic not near genes chr3L 10956520 intergenic not near genes chr3L 10956587 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-738 1220 chr3L 10957006 10957028 chr3L 10957082 10957089 7 72 5.0 4.5 4.8 1.2 83 chr3L 10957006 intergenic not near genes chr3L 10957048 intergenic not near genes chr3L 10957089 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-738 1221 chr3L 10971524 10971541 chr3L 10971866 10971886 8 345 2.0 2.5 2.2 2.5 362 chr3L 10971524 intergenic not near genes chr3L 10971705 intergenic not near genes chr3L 10971886 intergenic not near genes chr3L_8_10970001 chr3L_10970001 RAL-738 1222 chr3L 11087063 11087088 chr3L 11088846 11088867 S-element 6 1784 6.0 1.0 3.5 1.3 1804 chr3L 11087063 intron JIL-1 - chr3L 11087965 intron JIL-1 - chr3L 11088867 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-738 1223 chr3L 11105296 11105329 chr3L 11107007 11107038 X-element 20 1707 7.5 5.0 6.2 2.8 1742 chr3L 11105296 intergenic not near genes chr3L 11106167 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_20_11105001 chr3L_11105001 RAL-738 1224 chr3L 11127211 11127296 chr3L 11127288 11127373 8 73 0.0 0.0 0.0 8.0 162 chr3L 11127211 intron CG42575 + chr3L 11127292 intron CG42575 + chr3L 11127373 intron CG42575 + chr3L_8_11125001 chr3L_11125001 RAL-738 1225 chr3L 11135529 11135805 chr3L 11135759 11135890 15 113 2.0 2.0 2.0 5.0 361 chr3L 11135529 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135890 intergenic CG32082 +,CG14143 + chr3L_15_11135001 chr3L_11135001 RAL-738 1226 chr3L 11224549 11224574 chr3L 11224671 11224679 9 120 3.0 4.0 3.5 2.0 130 chr3L 11224549 intron CG42671 + chr3L 11224614 intron CG42671 + chr3L 11224679 intron CG42671 + chr3L_9_11220001 chr3L_11220001 RAL-738 1227 chr3L 11234614 11234649 chr3L 11234846 11234878 17 230 3.5 7.5 5.5 2.6 264 chr3L 11234614 exon Ir68a - chr3L 11234746 exon Ir68a - chr3L 11234878 exon Ir68a - chr3L_17_11230001 chr3L_11230001 RAL-738 1228 chr3L 11264462 11264498 chr3L 11271414 11271440 17.6 12 6950 4.0 1.5 2.8 3.2 6978 chr3L 11264462 intergenic not near genes chr3L 11267951 intergenic not near genes chr3L 11271440 intergenic not near genes chr3L_12_11265001 chr3L_11265001 RAL-738 1229 chr3L 11290625 11290628 chr3L 11290948 11290951 5 323 11.5 5.0 8.2 0.5 326 chr3L 11290625 intron CG6175 - chr3L 11290788 intron CG6175 - chr3L 11290951 intron CG6175 - chr3L_5_11290001 chr3L_11290001 RAL-738 1230 chr3L 11290629 11290657 chr3L 11290947 11290975 9 321 5.0 5.0 5.0 1.5 346 chr3L 11290629 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11290975 intron CG6175 - chr3L_9_11290001 chr3L_11290001 RAL-738 1231 chr3L 11379002 11379010 chr3L 11379081 11379100 4 87 4.5 2.5 3.5 0.9 98 chr3L 11379002 intergenic not near genes chr3L 11379051 intergenic not near genes chr3L 11379100 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-738 1232 chr3L 11434653 11434667 chr3L 11434738 11434748 8 84 5.0 0.0 2.5 2.3 95 chr3L 11434653 intergenic CG6149 - chr3L 11434700 3` UTR CG6149 - chr3L 11434748 3` UTR CG6149 - chr3L_8_11430001 chr3L_11430001 RAL-738 1233 chr3L 11435560 11435591 chr3L 11435729 11435760 21 167 5.0 5.5 5.2 3.4 200 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435760 5` UTR CR44548 + chr3L_21_11435001 chr3L_11435001 RAL-738 1234 chr3L 11471592 11471613 chr3L 11471670 11471691 7 78 1.0 5.0 3.0 1.8 99 chr3L 11471592 intergenic not near genes chr3L 11471642 intergenic not near genes chr3L 11471691 intergenic not near genes chr3L_7_11470001 chr3L_11470001 RAL-738 1235 chr3L 11474622 11474658 chr3L 11474711 11474747 10 89 2.0 0.5 1.2 4.5 125 chr3L 11474622 intergenic Vha16-2 + chr3L 11474684 intergenic Vha16-2 + chr3L 11474747 intergenic Vha16-2 + chr3L_10_11470001 chr3L_11470001 RAL-738 1236 chr3L 11564802 11564807 chr3L 11572412 11572412 412 6 7616 7.0 3.5 5.2 1.0 7610 chr3L 11564802 exon CG33267 + chr3L 11568607 intron CG33267 + chr3L 11572412 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-738 1237 chr3L 11564812 11564813 chr3L 11572407 11572438 412 5 7613 3.5 3.5 3.5 1.1 7626 chr3L 11564812 exon CG33267 + chr3L 11568625 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-738 1238 chr3L 11663751 11663757 chr3L 11663876 11663882 4 125 6.0 0.5 3.2 1.0 131 chr3L 11663751 intron CG32085 - chr3L 11663816 intron CG32085 - chr3L 11663882 intron CG32085 - chr3L_4_11660001 chr3L_11660001 RAL-738 1239 chr3L 11678101 11678122 chr3L 11678181 11678209 9 86 2.0 2.0 2.0 3.0 108 chr3L 11678101 intron CG32085 - chr3L 11678155 intron CG32085 - chr3L 11678209 intron CG32085 - chr3L_9_11675001 chr3L_11675001 RAL-738 1240 chr3L 11723088 11723115 chr3L 11727883 11727910 Doc 12 4794 5.0 8.0 6.5 1.6 4822 chr3L 11723088 3` UTR Bmcp + chr3L 11725499 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-738 1241 chr3L 11729678 11729692 chr3L 11729754 11729754 5 73 9.0 3.0 6.0 0.7 76 chr3L 11729678 exon CG32088 + chr3L 11729716 intron CG32088 + chr3L 11729754 intron CG32088 + chr3L_5_11725001 chr3L_11725001 RAL-738 1242 chr3L 11744015 11744043 chr3L 11744123 11744137 13 107 4.5 0.0 2.2 4.1 122 chr3L 11744015 exon CG6024 - chr3L 11744076 intron CG6024 - chr3L 11744137 intron CG6024 - chr3L_13_11740001 chr3L_11740001 RAL-738 1243 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028207 14.5 28.0 21.2 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-738 1244 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 27.0 22.0 24.5 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-738 1245 chr3L 11846403 11846418 chr3L 11846480 11846526 7 104 0.5 0.0 0.2 5.8 123 chr3L 11846403 intergenic not near genes chr3L 11846464 intergenic not near genes chr3L 11846526 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-738 1246 chr3L 11849331 11849356 chr3L 11849431 11849456 10 97 1.0 3.5 2.2 3.1 125 chr3L 11849331 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_10_11845001 chr3L_11845001 RAL-738 1247 chr3L 11864553 11864585 chr3L 11865848 11865880 pogo 15 1292 4.5 6.0 5.2 2.4 1327 chr3L 11864553 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_15_11865001 chr3L_11865001 RAL-738 1248 chr3L 11887260 11887289 chr3L 11887357 11887395 6 98 0.0 0.5 0.2 5.0 135 chr3L 11887260 intron,3` UTR CG44837 -,CG5897 - chr3L 11887328 intron,3` UTR CG44837 -,CG5897 - chr3L 11887395 intron,3` UTR CG44837 -,CG5897 - chr3L_6_11885001 chr3L_11885001 RAL-738 1249 chr3L 11902478 11902491 chr3L 11902554 11902562 6 74 8.0 6.5 7.2 0.7 84 chr3L 11902478 intron CG44837 - chr3L 11902520 intron CG44837 - chr3L 11902562 intron CG44837 - chr3L_6_11900001 chr3L_11900001 RAL-738 1250 chr3L 11902492 11902508 chr3L 11902551 11902551 8 64 4.5 6.5 5.5 1.2 59 chr3L 11902492 intron CG44837 - chr3L 11902522 intron CG44837 - chr3L 11902551 intron CG44837 - chr3L_8_11900001 chr3L_11900001 RAL-738 1251 chr3L 11905133 11905163 chr3L 11905210 11905240 16 76 6.0 6.0 6.0 2.3 107 chr3L 11905133 intron CG44837 - chr3L 11905186 intron CG44837 - chr3L 11905240 intron CG44837 - chr3L_16_11905001 chr3L_11905001 RAL-738 1252 chr3L 11943498 11943518 chr3L 11943599 11943619 5 101 4.5 5.5 5.0 0.8 121 chr3L 11943498 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_5_11940001 chr3L_11940001 RAL-738 1253 chr3L 12013912 12013938 chr3L 12014002 12014029 13 90 5.5 4.5 5.0 2.2 117 chr3L 12013912 intron rols - chr3L 12013970 intron rols - chr3L 12014029 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-738 1254 chr3L 12019324 12019351 chr3L 12019437 12019464 13 109 1.0 5.0 3.0 3.2 140 chr3L 12019324 intron rols - chr3L 12019394 intron rols - chr3L 12019464 intron rols - chr3L_13_12015001 chr3L_12015001 RAL-738 1255 chr3L 12052704 12052738 chr3L 12052793 12052827 19 86 3.5 2.0 2.8 5.0 123 chr3L 12052704 intron rols - chr3L 12052766 intron rols - chr3L 12052827 intron rols - chr3L_19_12050001 chr3L_12050001 RAL-738 1256 chr3L 12075433 12075458 chr3L 12075522 12075528 4 84 3.0 0.0 1.5 1.6 95 chr3L 12075433 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075528 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-738 1257 chr3L 12092397 12092419 chr3L 12092474 12092496 4 77 0.5 2.5 1.5 1.6 99 chr3L 12092397 intergenic not near genes chr3L 12092446 intergenic not near genes chr3L 12092496 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-738 1258 chr3L 12170793 12170821 chr3L 12170875 12170903 8 82 1.5 5.0 3.2 1.9 110 chr3L 12170793 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170903 intron Rh7 - chr3L_8_12170001 chr3L_12170001 RAL-738 1259 chr3L 12204392 12204415 chr3L 12204481 12204506 15 91 3.0 4.0 3.5 3.3 114 chr3L 12204392 3` UTR CG5626 - chr3L 12204449 intron CG5626 - chr3L 12204506 intron CG5626 - chr3L_15_12200001 chr3L_12200001 RAL-738 1260 chr3L 12231374 12231399 chr3L 12231676 12231704 12 304 33.5 37.0 35.2 0.3 330 chr3L 12231374 intron app - chr3L 12231539 intron app - chr3L 12231704 intron app - chr3L_12_12230001 chr3L_12230001 RAL-738 1261 chr3L 12381542 12381552 chr3L 12381619 12381625 6 77 1.0 0.0 0.5 4.0 83 chr3L 12381542 intron Ncc69 - chr3L 12381584 intron Ncc69 - chr3L 12381625 intron Ncc69 - chr3L_6_12380001 chr3L_12380001 RAL-738 1262 chr3L 12482823 12482850 chr3L 12482898 12482909 14 73 5.0 0.0 2.5 4.0 86 chr3L 12482823 intron,intron CG10663 -,CG33725 + chr3L 12482866 intron,intron CG10663 -,CG33725 + chr3L 12482909 intron,intron CG10663 -,CG33725 + chr3L_14_12480001 chr3L_12480001 RAL-738 1263 chr3L 12504119 12504144 chr3L 12504197 12504206 6 76 0.0 4.0 2.0 2.0 87 chr3L 12504119 intergenic vih +,CG10646 - chr3L 12504162 intergenic vih +,CG10646 - chr3L 12504206 intergenic vih +,CG10646 - chr3L_6_12500001 chr3L_12500001 RAL-738 1264 chr3L 12565357 12565390 chr3L 12565471 12565504 16 110 4.5 4.0 4.2 3.1 147 chr3L 12565357 intron sowah - chr3L 12565430 intron sowah - chr3L 12565504 intron sowah - chr3L_16_12565001 chr3L_12565001 RAL-738 1265 chr3L 12578050 12578075 chr3L 12578138 12578159 8 88 2.0 0.5 1.2 3.6 109 chr3L 12578050 intergenic not near genes chr3L 12578104 intergenic not near genes chr3L 12578159 intergenic not near genes chr3L_8_12575001 chr3L_12575001 RAL-738 1266 chr3L 12626157 12626165 chr3L 12626266 12626274 5 109 1.0 4.0 2.5 1.4 117 chr3L 12626157 intergenic not near genes chr3L 12626216 intergenic not near genes chr3L 12626274 intergenic not near genes chr3L_5_12625001 chr3L_12625001 RAL-738 1267 chr3L 11777678 11777678 chr3L 12638618 12638625 4 860942 27.0 14.5 20.8 0.2 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_4_12205001 chr3L_12205001 RAL-738 1268 chr3L 12654385 12654409 chr3L 12654465 12654489 7 78 7.0 4.0 5.5 1.1 104 chr3L 12654385 intergenic not near genes chr3L 12654437 intergenic not near genes chr3L 12654489 intergenic not near genes chr3L_7_12650001 chr3L_12650001 RAL-738 1269 chr3L 12775971 12775976 chr3L 12776059 12776062 5 94 6.5 0.0 3.2 1.2 91 chr3L 12775971 exon CG32106 - chr3L 12776016 exon CG32106 - chr3L 12776062 exon CG32106 - chr3L_5_12775001 chr3L_12775001 RAL-738 1270 chr3L 12799829 12799832 chr3L 12799937 12799940 4 108 6.0 14.5 10.2 0.4 111 chr3L 12799829 intron Atg1 - chr3L 12799884 intron Atg1 - chr3L 12799940 intron Atg1 - chr3L_4_12795001 chr3L_12795001 RAL-738 1271 chr3L 12867554 12867574 chr3L 12867647 12867667 8 91 2.5 3.0 2.8 2.1 113 chr3L 12867554 intergenic not near genes chr3L 12867610 intergenic not near genes chr3L 12867667 intergenic not near genes chr3L_8_12865001 chr3L_12865001 RAL-738 1272 chr3L 12874932 12874940 chr3L 12877224 12877232 jockey 4 2292 8.5 4.0 6.2 0.6 2300 chr3L 12874932 intergenic not near genes chr3L 12876082 intergenic not near genes chr3L 12877232 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-738 1273 chr3L 12874942 12874962 chr3L 12877223 12877254 jockey 8 2288 3.5 4.0 3.8 1.7 2312 chr3L 12874942 intergenic not near genes chr3L 12876098 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-738 1274 chr3L 12894804 12894816 chr3L 12894881 12894894 4 76 10.0 11.5 10.8 0.3 90 chr3L 12894804 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-738 1275 chr3L 12919282 12919300 chr3L 12924766 12924772 Rt1c 5 5481 6.0 2.5 4.2 1.0 5490 chr3L 12919282 intergenic not near genes chr3L 12922027 intergenic not near genes chr3L 12924772 intergenic not near genes chr3L_5_12920001 chr3L_12920001 RAL-738 1276 chr3L 12929734 12929742 chr3L 12930050 12930058 7 316 1.5 4.0 2.8 1.8 324 chr3L 12929734 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930058 intergenic not near genes chr3L_7_12925001 chr3L_12925001 RAL-738 1277 chr3L 12957785 12957819 chr3L 12962267 12962301 copia 21 4479 3.0 5.5 4.2 4.0 4516 chr3L 12957785 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_21_12960001 chr3L_12960001 RAL-738 1278 chr3L 12967133 12967169 chr3L 12967217 12967249 14 79 2.5 6.0 4.2 2.7 116 chr3L 12967133 exon Or69a - chr3L 12967191 exon Or69a - chr3L 12967249 exon Or69a - chr3L_14_12965001 chr3L_12965001 RAL-738 1279 chr3L 13007693 13007957 chr3L 13007772 13008039 26 78 3.0 2.0 2.5 7.4 346 chr3L 13007693 exon CG11263 + chr3L 13007866 3` UTR CG11263 + chr3L 13008039 intergenic CG11263 +,CG14117 + chr3L_26_13005001 chr3L_13005001 RAL-738 1280 chr3L 13144116 13144149 chr3L 13144193 13144226 13 75 3.5 4.0 3.8 2.7 110 chr3L 13144116 intergenic not near genes chr3L 13144171 intergenic not near genes chr3L 13144226 intergenic not near genes chr3L_13_13140001 chr3L_13140001 RAL-738 1281 chr3L 13147375 13147401 chr3L 13147452 13147478 6 77 0.5 1.5 1.0 3.0 103 chr3L 13147375 intergenic not near genes chr3L 13147426 intergenic not near genes chr3L 13147478 intergenic not near genes chr3L_6_13145001 chr3L_13145001 RAL-738 1282 chr3L 13206236 13206264 chr3L 13206317 13206333 17 79 4.5 4.0 4.2 3.3 97 chr3L 13206236 intergenic not near genes chr3L 13206284 intergenic not near genes chr3L 13206333 intergenic not near genes chr3L_17_13205001 chr3L_13205001 RAL-738 1283 chr3L 13240989 13241009 chr3L 13241095 13241115 5 106 6.0 4.0 5.0 0.8 126 chr3L 13240989 intron caps + chr3L 13241052 intron caps + chr3L 13241115 intron caps + chr3L_5_13240001 chr3L_13240001 RAL-738 1284 chr3L 13241012 13241017 chr3L 13241093 13241123 4 100 4.0 3.5 3.8 0.8 111 chr3L 13241012 intron caps + chr3L 13241068 intron caps + chr3L 13241123 intron caps + chr3L_4_13240001 chr3L_13240001 RAL-738 1285 chr3L 13267283 13267318 chr3L 13267396 13267431 8 111 2.5 1.5 2.0 2.7 148 chr3L 13267283 intron caps + chr3L 13267357 intron caps + chr3L 13267431 intron caps + chr3L_8_13265001 chr3L_13265001 RAL-738 1286 chr3L 13432292 13432325 chr3L 13432391 13432424 12 96 4.0 8.5 6.2 1.7 132 chr3L 13432292 intron CG10713 - chr3L 13432358 intron CG10713 - chr3L 13432424 intron CG10713 - chr3L_12_13430001 chr3L_13430001 RAL-738 1287 chr3L 13525155 13525182 chr3L 13532951 13532978 roo 13 7793 7.5 5.5 6.5 1.7 7823 chr3L 13525155 intergenic not near genes chr3L 13529066 intergenic not near genes chr3L 13532978 intergenic not near genes chr3L_13_13525001 chr3L_13525001 RAL-738 1288 chr3L 13525188 13525190 chr3L 13532950 13532986 roo 4 7785 5.0 5.5 5.2 0.6 7798 chr3L 13525188 intergenic not near genes chr3L 13529087 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-738 1289 chr3L 13535907 13535937 chr3L 13535976 13536013 9 74 2.5 3.5 3.0 2.2 106 chr3L 13535907 intergenic not near genes chr3L 13535960 intergenic not near genes chr3L 13536013 intergenic not near genes chr3L_9_13535001 chr3L_13535001 RAL-738 1290 chr3L 13692610 13692616 chr3L 13692661 13692693 4 70 2.5 1.5 2.0 1.3 83 chr3L 13692610 intron bru-3 - chr3L 13692652 intron bru-3 - chr3L 13692693 intron bru-3 - chr3L_4_13690001 chr3L_13690001 RAL-738 1291 chr3L 13745299 13745317 chr3L 13745381 13745399 4 82 1.0 1.0 1.0 2.0 100 chr3L 13745299 intron bru-3 - chr3L 13745349 intron bru-3 - chr3L 13745399 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-738 1292 chr3L 13751362 13751382 chr3L 13751439 13751459 14 76 2.0 1.5 1.8 5.0 97 chr3L 13751362 intron bru-3 - chr3L 13751410 intron bru-3 - chr3L 13751459 intron bru-3 - chr3L_14_13750001 chr3L_13750001 RAL-738 1293 chr3L 13804545 13804567 chr3L 13822831 13822845 roo 7 18285 4.5 2.5 3.5 1.6 18300 chr3L 13804545 intergenic not near genes chr3L 13813695 intergenic not near genes chr3L 13822845 intergenic not near genes chr3L_7_13810001 chr3L_13810001 RAL-738 1294 chr3L 13833769 13833796 chr3L 13833905 13833929 5 132 0.0 0.5 0.2 4.2 160 chr3L 13833769 intergenic not near genes chr3L 13833849 intergenic not near genes chr3L 13833929 intergenic not near genes chr3L_5_13830001 chr3L_13830001 RAL-738 1295 chr3L 13901571 13901601 chr3L 13901648 13901677 11 77 4.0 2.0 3.0 2.8 106 chr3L 13901571 intron dysc - chr3L 13901624 intron dysc - chr3L 13901677 intron dysc - chr3L_11_13900001 chr3L_13900001 RAL-738 1296 chr3L 13920419 13920433 chr3L 13920499 13920513 6 80 4.0 3.0 3.5 1.3 94 chr3L 13920419 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920513 intron Rgl - chr3L_6_13920001 chr3L_13920001 RAL-738 1297 chr3L 13964952 13964988 chr3L 13965115 13965151 23 162 2.0 5.5 3.8 4.8 199 chr3L 13964952 intergenic Meics -,Nxf3 +,ssp2 + chr3L 13965052 intergenic Nxf3 +,ssp2 +,Meics - chr3L 13965151 intergenic Nxf3 +,ssp2 +,Meics - chr3L_23_13965001 chr3L_13965001 RAL-738 1298 chr3L 13994011 13994016 chr3L 13994091 13994096 4 80 1.0 2.0 1.5 1.6 85 chr3L 13994011 intergenic 26-29-p + chr3L 13994054 intergenic 26-29-p + chr3L 13994096 intergenic 26-29-p + chr3L_4_13990001 chr3L_13990001 RAL-738 1299 chr3L 14004439 14004457 chr3L 14004517 14004520 5 75 14.5 3.5 9.0 0.5 81 chr3L 14004439 intron upSET + chr3L 14004480 intron upSET + chr3L 14004520 intron upSET + chr3L_5_14000001 chr3L_14000001 RAL-738 1300 chr3L 14050525 14050552 chr3L 14050954 14050982 14 430 1.0 8.0 4.5 2.5 457 chr3L 14050525 intergenic not near genes chr3L 14050754 intergenic CG6833 + chr3L 14050982 intergenic CG6833 + chr3L_14_14050001 chr3L_14050001 RAL-738 1301 chr3L 14061666 14061679 chr3L 14061755 14061763 4 88 7.5 0.0 3.8 0.8 97 chr3L 14061666 intron CG32138 + chr3L 14061714 intron CG32138 + chr3L 14061763 intron CG32138 + chr3L_4_14060001 chr3L_14060001 RAL-738 1302 chr3L 14076294 14076307 chr3L 14076372 14076385 5 78 0.0 3.0 1.5 2.0 91 chr3L 14076294 intron btl + chr3L 14076340 intron btl + chr3L 14076385 intron btl + chr3L_5_14075001 chr3L_14075001 RAL-738 1303 chr3L 14076308 14076320 chr3L 14076369 14076393 7 72 0.0 2.5 1.2 3.2 85 chr3L 14076308 intron btl + chr3L 14076350 intron btl + chr3L 14076393 intron btl + chr3L_7_14075001 chr3L_14075001 RAL-738 1304 chr3L 14092738 14092748 chr3L 14092821 14092831 5 83 5.0 0.5 2.8 1.3 93 chr3L 14092738 intergenic not near genes chr3L 14092784 intergenic not near genes chr3L 14092831 intergenic not near genes chr3L_5_14090001 chr3L_14090001 RAL-738 1305 chr3L 14180736 14180765 chr3L 14180812 14180841 16 74 0.5 7.0 3.8 3.3 105 chr3L 14180736 intergenic not near genes chr3L 14180788 intergenic not near genes chr3L 14180841 intergenic not near genes chr3L_16_14180001 chr3L_14180001 RAL-738 1306 chr3L 14207854 14207877 chr3L 14207931 14207954 4 78 3.5 9.0 6.2 0.6 100 chr3L 14207854 intron nuf + chr3L 14207904 intron nuf + chr3L 14207954 intron nuf + chr3L_4_14205001 chr3L_14205001 RAL-738 1307 chr3L 14211438 14211464 chr3L 14211516 14211542 16 78 0.5 4.0 2.2 5.0 104 chr3L 14211438 intron nuf + chr3L 14211490 intron nuf + chr3L 14211542 intron nuf + chr3L_16_14210001 chr3L_14210001 RAL-738 1308 chr3L 14239992 14240007 chr3L 14240089 14240103 8 95 1.5 0.5 1.0 4.0 111 chr3L 14239992 intergenic not near genes chr3L 14240048 intergenic not near genes chr3L 14240103 intergenic not near genes chr3L_8_14240001 chr3L_14240001 RAL-738 1309 chr3L 14245565 14245593 chr3L 14245659 14245682 1360 9 89 1.0 5.5 3.2 2.1 117 chr3L 14245565 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245682 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-738 1310 chr3L 14267375 14267402 chr3L 14271805 14271816 F-element 14 4432 3.5 3.5 3.5 3.1 4441 chr3L 14267375 intergenic not near genes chr3L 14269596 intergenic not near genes chr3L 14271816 intergenic not near genes chr3L_14_14265001 chr3L_14265001 RAL-738 1311 chr3L 14282599 14282606 chr3L 14282673 14282686 4 78 0.5 12.0 6.2 0.6 87 chr3L 14282599 intron fz + chr3L 14282642 intron fz + chr3L 14282686 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-738 1312 chr3L 14295981 14296012 chr3L 14296467 14296498 roo 11 483 4.0 6.5 5.2 1.8 517 chr3L 14295981 intron fz + chr3L 14296240 intron fz + chr3L 14296498 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-738 1313 chr3L 14322628 14322649 chr3L 14322705 14322726 4 77 4.0 3.5 3.8 0.8 98 chr3L 14322628 intron,3` UTR fz +,CR45025 - chr3L 14322677 intron,3` UTR fz +,CR45025 - chr3L 14322726 intron,3` UTR fz +,CR45025 - chr3L_4_14320001 chr3L_14320001 RAL-738 1314 chr3L 14356519 14356531 chr3L 14356599 14356611 6 80 8.5 4.0 6.2 0.8 92 chr3L 14356519 intron fz + chr3L 14356565 intron fz + chr3L 14356611 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-738 1315 chr3L 14356533 14356553 chr3L 14356598 14356618 9 73 4.5 4.0 4.2 1.7 85 chr3L 14356533 intron fz + chr3L 14356576 intron fz + chr3L 14356618 intron fz + chr3L_9_14355001 chr3L_14355001 RAL-738 1316 chr3L 14375664 14375672 chr3L 14375782 14375786 4 115 2.5 9.0 5.8 0.6 122 chr3L 14375664 intergenic not near genes chr3L 14375725 intergenic not near genes chr3L 14375786 intergenic not near genes chr3L_4_14375001 chr3L_14375001 RAL-738 1317 chr3L 14375673 14375679 chr3L 14375769 14375797 6 110 2.5 4.5 3.5 1.3 124 chr3L 14375673 intergenic not near genes chr3L 14375735 intergenic not near genes chr3L 14375797 intergenic not near genes chr3L_6_14375001 chr3L_14375001 RAL-738 1318 chr3L 14399177 14399199 chr3L 14399266 14399281 8 86 4.5 0.0 2.2 2.5 104 chr3L 14399177 intergenic not near genes chr3L 14399229 intergenic not near genes chr3L 14399281 intergenic not near genes chr3L_8_14395001 chr3L_14395001 RAL-738 1319 chr3L 14411871 14411899 chr3L 14411944 14411978 14 78 2.5 4.0 3.2 3.3 107 chr3L 14411871 intron CG3919 + chr3L 14411924 intron CG3919 + chr3L 14411978 intron CG3919 + chr3L_14_14410001 chr3L_14410001 RAL-738 1320 chr3L 14417552 14417576 chr3L 14417642 14417655 11 88 5.0 1.5 3.2 2.6 103 chr3L 14417552 intron bbg - chr3L 14417604 intron bbg - chr3L 14417655 intron bbg - chr3L_11_14415001 chr3L_14415001 RAL-738 1321 chr3L 14467135 14467152 chr3L 14467217 14467240 9 84 7.5 6.0 6.8 1.2 105 chr3L 14467135 intron bbg - chr3L 14467188 intron bbg - chr3L 14467240 intron bbg - chr3L_9_14465001 chr3L_14465001 RAL-738 1322 chr3L 14468442 14468478 chr3L 14473648 14473684 copia 13 5205 5.5 4.0 4.8 2.2 5242 chr3L 14468442 intron bbg - chr3L 14471063 intron bbg - chr3L 14473684 intron bbg - chr3L_13_14470001 chr3L_14470001 RAL-738 1323 chr3L 14522101 14522130 chr3L 14522200 14522229 6 99 1.5 2.0 1.8 2.1 128 chr3L 14522101 intron bbg - chr3L 14522165 intron bbg - chr3L 14522229 intron bbg - chr3L_6_14520001 chr3L_14520001 RAL-738 1324 chr3L 14565745 14565777 chr3L 14565835 14565868 16 91 3.5 2.0 2.8 4.2 123 chr3L 14565745 intergenic not near genes chr3L 14565806 intergenic not near genes chr3L 14565868 intergenic not near genes chr3L_16_14565001 chr3L_14565001 RAL-738 1325 chr3L 14584158 14584187 chr3L 14584245 14584274 8 85 2.0 1.5 1.8 2.9 116 chr3L 14584158 intron HGTX - chr3L 14584216 intron HGTX - chr3L 14584274 intron HGTX - chr3L_8_14580001 chr3L_14580001 RAL-738 1326 chr3L 14721185 14721202 chr3L 14723028 14723044 Rt1c 5 1841 6.5 6.0 6.2 0.7 1859 chr3L 14721185 intron ome + chr3L 14722114 intron ome + chr3L 14723044 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-738 1327 chr3L 14725609 14725623 chr3L 14728603 14728606 Doc 5 2989 6.5 7.0 6.8 0.6 2997 chr3L 14725609 intron ome + chr3L 14727108 intron ome + chr3L 14728606 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-738 1328 chr3L 14861811 14861834 chr3L 14861891 14861914 11 80 3.0 8.5 5.8 1.6 103 chr3L 14861811 intron CG17839 + chr3L 14861862 intron CG17839 + chr3L 14861914 intron CG17839 + chr3L_11_14860001 chr3L_14860001 RAL-738 1329 chr3L 14922102 14922130 chr3L 14922210 14922223 11 103 5.0 1.5 3.2 2.6 121 chr3L 14922102 intron DCX-EMAP + chr3L 14922162 intron DCX-EMAP + chr3L 14922223 intron DCX-EMAP + chr3L_11_14920001 chr3L_14920001 RAL-738 1330 chr3L 14933445 14933460 chr3L 14933527 14933542 4 81 2.5 5.5 4.0 0.8 97 chr3L 14933445 intron DCX-EMAP + chr3L 14933494 intron DCX-EMAP + chr3L 14933542 intron DCX-EMAP + chr3L_4_14930001 chr3L_14930001 RAL-738 1331 chr3L 15010816 15010824 chr3L 15010913 15010925 8 105 5.0 1.0 3.0 2.0 109 chr3L 15010816 intron Reck - chr3L 15010870 intron Reck - chr3L 15010925 intron Reck - chr3L_8_15010001 chr3L_15010001 RAL-738 1332 chr3L 15053438 15053449 chr3L 15053761 15053768 4 323 2.0 5.5 3.8 0.8 330 chr3L 15053438 intron Sytbeta - chr3L 15053603 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053768 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-738 1333 chr3L 15055173 15055210 chr3L 15055250 15055287 30 74 9.5 11.5 10.5 2.6 114 chr3L 15055173 intron,exon Sytbeta -,CG13463 + chr3L 15055230 intron,exon Sytbeta -,CG13463 + chr3L 15055287 intron,exon Sytbeta -,CG13463 + chr3L_30_15055001 chr3L_15055001 RAL-738 1334 chr3L 15085053 15085085 chr3L 15086219 15086250 1360 9 1162 1.5 6.0 3.8 1.9 1197 chr3L 15085053 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086250 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-738 1335 chr3L 15151227 15151240 chr3L 15151411 15151424 9 183 3.5 2.0 2.8 2.4 197 chr3L 15151227 intron FucTA + chr3L 15151326 intron FucTA + chr3L 15151424 intron FucTA + chr3L_9_15150001 chr3L_15150001 RAL-738 1336 chr3L 15165033 15165047 chr3L 15165131 15165146 4 99 0.0 0.5 0.2 3.3 113 chr3L 15165033 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165146 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-738 1337 chr3L 15224452 15224482 chr3L 15224545 15224575 11 90 8.0 7.5 7.8 1.2 123 chr3L 15224452 intergenic not near genes chr3L 15224514 intergenic not near genes chr3L 15224575 intergenic not near genes chr3L_11_15220001 chr3L_15220001 RAL-738 1338 chr3L 15231389 15231422 chr3L 15231482 15231513 10 87 2.5 3.5 3.0 2.5 124 chr3L 15231389 intergenic not near genes chr3L 15231451 intergenic not near genes chr3L 15231513 intergenic not near genes chr3L_10_15230001 chr3L_15230001 RAL-738 1339 chr3L 15233551 15233585 chr3L 15233631 15233666 12 81 3.5 6.5 5.0 2.0 115 chr3L 15233551 intergenic not near genes chr3L 15233608 intergenic not near genes chr3L 15233666 intergenic not near genes chr3L_12_15230001 chr3L_15230001 RAL-738 1340 chr3L 15264078 15264086 chr3L 15264155 15264163 5 77 0.0 2.0 1.0 2.5 85 chr3L 15264078 intergenic not near genes chr3L 15264120 intergenic not near genes chr3L 15264163 intergenic not near genes chr3L_5_15260001 chr3L_15260001 RAL-738 1341 chr3L 15295767 15295796 chr3L 15298610 15298639 gypsy5 7 2842 7.5 4.0 5.8 1.0 2872 chr3L 15295767 intergenic not near genes chr3L 15297203 intergenic not near genes chr3L 15298639 intergenic Best4 + chr3L_7_15295001 chr3L_15295001 RAL-738 1342 chr3L 15406019 15406055 chr3L 15406101 15406137 5 82 1.5 4.0 2.8 1.3 118 chr3L 15406019 intergenic not near genes chr3L 15406078 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-738 1343 chr3L 15423761 15423777 chr3L 15426605 15426621 opus 5 2844 6.5 1.5 4.0 1.0 2860 chr3L 15423761 intergenic not near genes chr3L 15425191 intergenic not near genes chr3L 15426621 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-738 1344 chr3L 15449712 15449732 chr3L 15449851 15449876 9 143 3.0 13.5 8.2 1.0 164 chr3L 15449712 intergenic not near genes chr3L 15449794 intergenic not near genes chr3L 15449876 intergenic not near genes chr3L_9_15445001 chr3L_15445001 RAL-738 1345 chr3L 15466038 15466138 chr3L 15466120 15466234 11 86 0.0 0.0 0.0 11.0 196 chr3L 15466038 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466234 intergenic not near genes chr3L_11_15465001 chr3L_15465001 RAL-738 1346 chr3L 15477325 15477343 chr3L 15477454 15477472 5 129 2.0 3.0 2.5 1.4 147 chr3L 15477325 intergenic not near genes chr3L 15477398 intergenic not near genes chr3L 15477472 intergenic not near genes chr3L_5_15475001 chr3L_15475001 RAL-738 1347 chr3L 15493320 15493332 chr3L 15493409 15493411 4 85 7.0 0.0 3.5 0.9 91 chr3L 15493320 exon CG12355 - chr3L 15493366 intron CG12355 - chr3L 15493411 intron CG12355 - chr3L_4_15490001 chr3L_15490001 RAL-738 1348 chr3L 15541616 15541648 chr3L 15541707 15541739 10 89 6.0 2.5 4.2 1.9 123 chr3L 15541616 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541739 intron CrebA + chr3L_10_15540001 chr3L_15540001 RAL-738 1349 chr3L 15633183 15633210 chr3L 15633263 15633280 5 78 2.5 2.0 2.2 1.6 97 chr3L 15633183 intron comm3 - chr3L 15633232 intron comm3 - chr3L 15633280 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-738 1350 chr3L 15756878 15756911 chr3L 15756961 15756969 11 77 4.0 0.5 2.2 3.4 91 chr3L 15756878 intergenic not near genes chr3L 15756924 intergenic not near genes chr3L 15756969 intergenic not near genes chr3L_11_15755001 chr3L_15755001 RAL-738 1351 chr3L 15768992 15769012 chr3L 15769099 15769124 4 108 1.5 0.0 0.8 2.2 132 chr3L 15768992 intergenic not near genes chr3L 15769058 intergenic not near genes chr3L 15769124 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-738 1352 chr3L 15775831 15775864 chr3L 15775908 15775941 18 73 1.5 3.5 2.5 5.1 110 chr3L 15775831 intergenic not near genes chr3L 15775886 intergenic not near genes chr3L 15775941 intergenic not near genes chr3L_18_15775001 chr3L_15775001 RAL-738 1353 chr3L 15871593 15871617 chr3L 15871677 15871701 7 84 2.5 6.5 4.5 1.3 108 chr3L 15871593 intron pHCl - chr3L 15871647 intron pHCl - chr3L 15871701 intron pHCl - chr3L_7_15870001 chr3L_15870001 RAL-738 1354 chr3L 15942198 15942225 chr3L 15942274 15942301 11 76 4.0 5.5 4.8 1.9 103 chr3L 15942198 intron Pka-C3 - chr3L 15942250 intron Pka-C3 - chr3L 15942301 intron Pka-C3 - chr3L_11_15940001 chr3L_15940001 RAL-738 1355 chr3L 16112946 16112956 chr3L 16113147 16113155 4 200 6.5 6.5 6.5 0.5 209 chr3L 16112946 intergenic Taf4 +,Zn72D - chr3L 16113050 intergenic Taf4 +,Zn72D - chr3L 16113155 intergenic Taf4 + chr3L_4_16110001 chr3L_16110001 RAL-738 1356 chr3L 16162605 16162626 chr3L 16162689 16162708 7 83 5.0 3.5 4.2 1.3 103 chr3L 16162605 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162708 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-738 1357 chr3L 16180348 16180370 chr3L 16180450 16180472 9 98 5.0 3.0 4.0 1.8 124 chr3L 16180348 intergenic not near genes chr3L 16180410 intergenic not near genes chr3L 16180472 intergenic not near genes chr3L_9_16180001 chr3L_16180001 RAL-738 1358 chr3L 16184103 16184139 chr3L 16188922 16188952 X-element 14 4814 5.0 4.0 4.5 2.5 4849 chr3L 16184103 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188952 intergenic not near genes chr3L_14_16185001 chr3L_16185001 RAL-738 1359 chr3L 16239941 16239948 chr3L 16240017 16240024 9 75 4.0 3.5 3.8 1.9 83 chr3L 16239941 intergenic l(3)72Dr + chr3L 16239982 intergenic not near genes chr3L 16240024 intergenic not near genes chr3L_9_16235001 chr3L_16235001 RAL-738 1360 chr3L 16279086 16279104 chr3L 16279167 16279185 8 81 6.0 4.5 5.2 1.3 99 chr3L 16279086 intron CG13050 - chr3L 16279136 intron CG13050 - chr3L 16279185 intron CG13050 - chr3L_8_16275001 chr3L_16275001 RAL-738 1361 chr3L 16322823 16322858 chr3L 16322913 16322948 15 83 7.0 6.0 6.5 2.0 125 chr3L 16322823 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322948 intergenic not near genes chr3L_15_16320001 chr3L_16320001 RAL-738 1362 chr3L 16368150 16368158 chr3L 16368556 16368563 6 416 3.5 3.0 3.2 1.4 413 chr3L 16368150 intergenic CG4842 + chr3L 16368356 intergenic CG4842 + chr3L 16368563 intron CG4842 + chr3L_6_16365001 chr3L_16365001 RAL-738 1363 chr3L 16520619 16520633 chr3L 16520748 16520762 4 129 0.5 6.0 3.2 1.0 143 chr3L 16520619 intron CG43373 - chr3L 16520690 intron CG43373 - chr3L 16520762 intron CG43373 - chr3L_4_16520001 chr3L_16520001 RAL-738 1364 chr3L 16540052 16540086 chr3L 16540140 16540174 16 87 3.5 4.5 4.0 3.2 122 chr3L 16540052 intron CG43373 - chr3L 16540113 intron CG43373 - chr3L 16540174 intron CG43373 - chr3L_16_16540001 chr3L_16540001 RAL-738 1365 chr3L 16610692 16610714 chr3L 16610777 16610799 5 83 2.5 6.5 4.5 0.9 107 chr3L 16610692 3` UTR Su(P) - chr3L 16610746 exon Su(P) - chr3L 16610799 exon Su(P) - chr3L_5_16610001 chr3L_16610001 RAL-738 1366 chr3L 16616509 16616540 chr3L 16621836 16621858 297 13 5322 1.5 2.5 2.0 4.3 5349 chr3L 16616509 3` UTR Abl - chr3L 16619184 3` UTR Abl - chr3L 16621858 3` UTR Abl - chr3L_13_16615001 chr3L_16615001 RAL-738 1367 chr3L 16638787 16638800 chr3L 16638857 16638880 5 78 1.5 3.0 2.2 1.6 93 chr3L 16638787 intron Abl - chr3L 16638834 intron Abl - chr3L 16638880 intron Abl - chr3L_5_16635001 chr3L_16635001 RAL-738 1368 chr3L 16684035 16684046 chr3L 16689256 16689267 copia 4 5221 3.5 6.5 5.0 0.7 5232 chr3L 16684035 intron,intron Lasp -,CG43954 - chr3L 16686651 intron,intron Lasp -,CG43954 - chr3L 16689267 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-738 1369 chr3L 16749205 16749233 chr3L 16749281 16749309 13 72 2.5 1.0 1.8 4.6 104 chr3L 16749205 intergenic not near genes chr3L 16749257 intergenic not near genes chr3L 16749309 intergenic not near genes chr3L_13_16745001 chr3L_16745001 RAL-738 1370 chr3L 16786981 16786999 chr3L 16787057 16787075 4 72 1.5 5.5 3.5 0.9 94 chr3L 16786981 intergenic Int6 - chr3L 16787028 intergenic Int6 - chr3L 16787075 intergenic Int6 -,CG9674 - chr3L_4_16785001 chr3L_16785001 RAL-738 1371 chr3L 16808045 16808073 chr3L 16808121 16808149 9 76 2.5 0.0 1.2 4.1 104 chr3L 16808045 intron nudC + chr3L 16808097 intron nudC + chr3L 16808149 intron nudC + chr3L_9_16805001 chr3L_16805001 RAL-738 1372 chr3L 16817878 16817909 chr3L 16818018 16818038 13 136 6.0 5.0 5.5 2.0 160 chr3L 16817878 intron,intron nudC +,CG13024 - chr3L 16817958 intron,intron nudC +,CG13024 - chr3L 16818038 intron,intron nudC +,CG13024 - chr3L_13_16815001 chr3L_16815001 RAL-738 1373 chr3L 16845024 16845031 chr3L 16845137 16845144 4 113 9.0 3.5 6.2 0.6 120 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845084 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845144 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-738 1374 chr3L 16869575 16869606 chr3L 16869658 16869689 11 78 1.5 5.0 3.2 2.6 114 chr3L 16869575 intron Lmpt + chr3L 16869632 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_11_16865001 chr3L_16865001 RAL-738 1375 chr3L 16870870 16870898 chr3L 16870961 16870989 8 85 1.0 3.5 2.2 2.5 119 chr3L 16870870 intron Lmpt + chr3L 16870930 intron Lmpt + chr3L 16870989 intron Lmpt + chr3L_8_16870001 chr3L_16870001 RAL-738 1376 chr3L 16873338 16873365 chr3L 16873443 16873459 9 104 6.0 1.5 3.8 1.9 121 chr3L 16873338 intron Lmpt + chr3L 16873398 intron Lmpt + chr3L 16873459 intron Lmpt + chr3L_9_16870001 chr3L_16870001 RAL-738 1377 chr3L 16912929 16912952 chr3L 16913007 16913017 10 76 0.5 5.0 2.8 2.6 88 chr3L 16912929 intron Lmpt + chr3L 16912973 intron Lmpt + chr3L 16913017 intron Lmpt + chr3L_10_16910001 chr3L_16910001 RAL-738 1378 chr3L 16941401 16941432 chr3L 16941502 16941516 5 97 2.5 0.5 1.5 2.0 115 chr3L 16941401 intron Cpr73D - chr3L 16941458 intron Cpr73D - chr3L 16941516 intron Cpr73D - chr3L_5_16940001 chr3L_16940001 RAL-738 1379 chr3L 16945733 16945760 chr3L 16954881 16954896 roo 20 9147 5.0 2.0 3.5 4.4 9163 chr3L 16945733 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_20_16950001 chr3L_16950001 RAL-738 1380 chr3L 16971050 16971252 chr3L 16971137 16971328 21 75 9.5 1.5 5.5 3.2 278 chr3L 16971050 intron Exn + chr3L 16971189 intron Exn + chr3L 16971328 intron Exn + chr3L_21_16970001 chr3L_16970001 RAL-738 1381 chr3L 16977198 16977226 chr3L 16977278 16977289 12 74 5.0 2.0 3.5 2.7 91 chr3L 16977198 intron Exn + chr3L 16977244 intron Exn + chr3L 16977289 intron Exn + chr3L_12_16975001 chr3L_16975001 RAL-738 1382 chr3L 17034936 17034968 chr3L 17035124 17035156 G2 8 188 2.5 1.5 2.0 2.7 220 chr3L 17034936 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035156 intergenic not near genes chr3L_8_17035001 chr3L_17035001 RAL-738 1383 chr3L 17085002 17085037 chr3L 17094151 17094186 roo 15 9148 6.5 5.0 5.8 2.2 9184 chr3L 17085002 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094186 intron Rbp6 - chr3L_15_17085001 chr3L_17085001 RAL-738 1384 chr3L 17120654 17120684 chr3L 17120730 17120750 7 73 2.5 7.0 4.8 1.2 96 chr3L 17120654 intron Rbp6 - chr3L 17120702 intron Rbp6 - chr3L 17120750 intron Rbp6 - chr3L_7_17120001 chr3L_17120001 RAL-738 1385 chr3L 17142739 17142753 chr3L 17142967 17142970 4 225 17.5 16.5 17.0 0.2 231 chr3L 17142739 intron Rbp6 - chr3L 17142854 intron Rbp6 - chr3L 17142970 intron Rbp6 - chr3L_4_17140001 chr3L_17140001 RAL-738 1386 chr3L 17146951 17146986 chr3L 17147033 17147061 9 80 11.0 12.0 11.5 0.7 110 chr3L 17146951 intron Rbp6 - chr3L 17147006 intron Rbp6 - chr3L 17147061 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-738 1387 chr3L 17149164 17149182 chr3L 17149245 17149263 6 81 18.0 16.0 17.0 0.3 99 chr3L 17149164 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-738 1388 chr3L 17195543 17195556 chr3L 17195659 17195672 6 117 9.0 11.0 10.0 0.5 129 chr3L 17195543 intron Rbp6 - chr3L 17195608 intron Rbp6 - chr3L 17195672 intron Rbp6 - chr3L_6_17195001 chr3L_17195001 RAL-738 1389 chr3L 17408914 17408923 chr3L 17408990 17408999 4 76 17.5 13.0 15.2 0.2 85 chr3L 17408914 intron blot - chr3L 17408956 intron blot - chr3L 17408999 intron blot - chr3L_4_17405001 chr3L_17405001 RAL-738 1390 chr3L 17510738 17510765 chr3L 17510822 17510849 10 83 3.5 3.0 3.2 2.4 111 chr3L 17510738 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 RAL-738 1391 chr3L 17516981 17517012 chr3L 17524539 17524569 412 5 7557 2.0 5.0 3.5 1.1 7588 chr3L 17516981 intron CG7564 + chr3L 17520775 intron CG7564 + chr3L 17524569 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-738 1392 chr3L 17538343 17538366 chr3L 17538418 17538424 4 66 9.0 3.0 6.0 0.6 81 chr3L 17538343 intron Nedd4 + chr3L 17538384 intron Nedd4 + chr3L 17538424 intron Nedd4 + chr3L_4_17535001 chr3L_17535001 RAL-738 1393 chr3L 17592785 17592818 chr3L 17592876 17592909 10 91 9.0 10.5 9.8 0.9 124 chr3L 17592785 intron Eip74EF - chr3L 17592847 intron Eip74EF - chr3L 17592909 intron Eip74EF - chr3L_10_17590001 chr3L_17590001 RAL-738 1394 chr3L 17730848 17730883 chr3L 17738178 17738213 mdg1 8 7330 2.5 4.0 3.2 1.9 7365 chr3L 17730848 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738213 intron Ccn + chr3L_8_17730001 chr3L_17730001 RAL-738 1395 chr3L 17789844 17789877 chr3L 17789920 17789953 6 76 0.5 5.0 2.8 1.6 109 chr3L 17789844 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789953 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-738 1396 chr3L 17799815 17799841 chr3L 17801602 17801628 S-element 9 1786 9.5 8.5 9.0 0.9 1813 chr3L 17799815 intron NUCB1 - chr3L 17800722 intron NUCB1 - chr3L 17801628 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-738 1397 chr3L 17834321 17834354 chr3L 17834485 17834518 7 162 3.0 2.0 2.5 2.0 197 chr3L 17834321 intron Grd + chr3L 17834420 intron Grd + chr3L 17834518 intron Grd + chr3L_7_17830001 chr3L_17830001 RAL-738 1398 chr3L 17837627 17837649 chr3L 17837715 17837737 5 88 16.5 23.0 19.8 0.2 110 chr3L 17837627 exon Grd + chr3L 17837682 intron Grd + chr3L 17837737 intron Grd + chr3L_5_17835001 chr3L_17835001 RAL-738 1399 chr3L 17884692 17884712 chr3L 17884792 17884812 5 100 6.5 6.0 6.2 0.7 120 chr3L 17884692 intergenic CG5506 - chr3L 17884752 intergenic CG5506 - chr3L 17884812 intergenic CG5506 - chr3L_5_17880001 chr3L_17880001 RAL-738 1400 chr3L 17918371 17918395 chr3L 17921174 17921198 opus 6 2800 5.0 0.5 2.8 1.6 2827 chr3L 17918371 intergenic not near genes chr3L 17919784 intergenic not near genes chr3L 17921198 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-738 1401 chr3L 17991573 17991589 chr3L 17991651 17991667 5 78 6.0 7.5 6.8 0.6 94 chr3L 17991573 intron Eip75B - chr3L 17991620 intron Eip75B - chr3L 17991667 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-738 1402 chr3L 18000673 18000704 chr3L 18000750 18000781 9 76 12.5 11.5 12.0 0.7 108 chr3L 18000673 intron Eip75B - chr3L 18000727 intron Eip75B - chr3L 18000781 intron Eip75B - chr3L_9_18000001 chr3L_18000001 RAL-738 1403 chr3L 18021362 18021383 chr3L 18021454 18021466 7 89 16.5 13.0 14.8 0.4 104 chr3L 18021362 intron Eip75B - chr3L 18021414 intron Eip75B - chr3L 18021466 intron Eip75B - chr3L_7_18020001 chr3L_18020001 RAL-738 1404 chr3L 18029845 18029987 chr3L 18029914 18030064 11 75 1.5 5.5 3.5 2.4 219 chr3L 18029845 intron Eip75B - chr3L 18029954 intron Eip75B - chr3L 18030064 intron Eip75B - chr3L_11_18025001 chr3L_18025001 RAL-738 1405 chr3L 18047709 18047734 chr3L 18056765 18056786 roo 8 9056 3.0 5.0 4.0 1.6 9077 chr3L 18047709 intron Eip75B - chr3L 18052248 intron Eip75B - chr3L 18056786 intron Eip75B - chr3L_8_18050001 chr3L_18050001 RAL-738 1406 chr3L 18057972 18058005 chr3L 18058073 18058106 7 97 3.5 2.0 2.8 1.8 134 chr3L 18057972 intron Eip75B - chr3L 18058039 intron Eip75B - chr3L 18058106 intron Eip75B - chr3L_7_18055001 chr3L_18055001 RAL-738 1407 chr3L 18073978 18074004 chr3L 18074079 18074105 13 100 16.5 13.5 15.0 0.8 127 chr3L 18073978 intergenic CG44004 - chr3L 18074042 intergenic CG44004 - chr3L 18074105 intergenic CG44004 - chr3L_13_18070001 chr3L_18070001 RAL-738 1408 chr3L 18092785 18092805 chr3L 18092899 18092920 6 115 13.0 9.0 11.0 0.5 135 chr3L 18092785 intron CG13698 - chr3L 18092852 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_6_18090001 chr3L_18090001 RAL-738 1409 chr3L 18106250 18106284 chr3L 18106369 18106403 8 117 8.0 9.5 8.8 0.8 153 chr3L 18106250 intergenic CG13698 -,mRpS26 + chr3L 18106326 intergenic CG13698 -,mRpS26 + chr3L 18106403 intergenic mRpS26 +,CG13698 - chr3L_8_18105001 chr3L_18105001 RAL-738 1410 chr3L 18107614 18107650 chr3L 18107707 18107743 7 93 0.5 3.0 1.8 2.5 129 chr3L 18107614 intergenic mRpS26 +,CG5147 - chr3L 18107678 intergenic CG5147 -,mRpS26 + chr3L 18107743 intergenic CG5147 -,mRpS26 + chr3L_7_18105001 chr3L_18105001 RAL-738 1411 chr3L 18122633 18122658 chr3L 18122705 18122718 10 72 14.0 16.5 15.2 0.6 85 chr3L 18122633 intergenic not near genes chr3L 18122676 intergenic not near genes chr3L 18122718 intergenic not near genes chr3L_10_18120001 chr3L_18120001 RAL-738 1412 chr3L 18133021 18133043 chr3L 18133109 18133133 7 90 11.5 12.5 12.0 0.5 112 chr3L 18133021 intergenic Cyp312a1 - chr3L 18133077 intergenic Cyp312a1 - chr3L 18133133 intergenic Cyp312a1 - chr3L_7_18130001 chr3L_18130001 RAL-738 1413 chr3L 18163981 18164241 chr3L 18164183 18164408 4 184 5.5 3.0 4.2 0.8 427 chr3L 18163981 intergenic not near genes chr3L 18164194 intergenic not near genes chr3L 18164408 intergenic not near genes chr3L_4_18160001 chr3L_18160001 RAL-738 1414 chr3L 18175817 18175839 chr3L 18176056 18176077 8 239 2.5 2.5 2.5 2.3 260 chr3L 18175817 intron W - chr3L 18175947 intron W - chr3L 18176077 intron W - chr3L_8_18175001 chr3L_18175001 RAL-738 1415 chr3L 18203593 18203602 chr3L 18203688 18203697 4 95 14.0 8.5 11.2 0.3 104 chr3L 18203593 3` UTR CG7320 + chr3L 18203645 intergenic CG7320 + chr3L 18203697 intergenic CG7320 + chr3L_4_18200001 chr3L_18200001 RAL-738 1416 chr3L 18223172 18223189 chr3L 18223255 18223262 6 81 2.0 1.0 1.5 2.4 90 chr3L 18223172 intergenic not near genes chr3L 18223217 intergenic not near genes chr3L 18223262 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-738 1417 chr3L 18247815 18247819 chr3L 18247893 18247896 4 78 0.0 0.0 0.0 4.0 81 chr3L 18247815 intergenic not near genes chr3L 18247856 intergenic not near genes chr3L 18247896 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-738 1418 chr3L 18248974 18248987 chr3L 18249049 18249085 4 90 2.5 4.0 3.2 1.0 111 chr3L 18248974 intergenic not near genes chr3L 18249030 intergenic not near genes chr3L 18249085 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-738 1419 chr3L 18251767 18251780 chr3L 18251855 18251873 8 91 9.0 8.0 8.5 0.8 106 chr3L 18251767 intergenic CheA75a + chr3L 18251820 intergenic CheA75a + chr3L 18251873 intergenic CheA75a + chr3L_8_18250001 chr3L_18250001 RAL-738 1420 chr3L 18262471 18262484 chr3L 18262554 18262567 7 83 3.5 2.0 2.8 1.8 96 chr3L 18262471 intergenic not near genes chr3L 18262519 intergenic not near genes chr3L 18262567 intergenic not near genes chr3L_7_18260001 chr3L_18260001 RAL-738 1421 chr3L 18301352 18301379 chr3L 18301441 18301456 7 87 0.0 2.0 1.0 3.5 104 chr3L 18301352 intergenic CG13700 - chr3L 18301404 intergenic CG13700 - chr3L 18301456 intergenic CG13700 - chr3L_7_18300001 chr3L_18300001 RAL-738 1422 chr3L 18310907 18310935 chr3L 18310989 18311016 10 78 13.0 14.5 13.8 0.7 109 chr3L 18310907 intergenic not near genes chr3L 18310962 intergenic not near genes chr3L 18311016 intergenic not near genes chr3L_10_18310001 chr3L_18310001 RAL-738 1423 chr3L 18321090 18321102 chr3L 18321172 18321188 5 85 9.5 6.5 8.0 0.6 98 chr3L 18321090 intergenic not near genes chr3L 18321139 intergenic not near genes chr3L 18321188 intergenic not near genes chr3L_5_18320001 chr3L_18320001 RAL-738 1424 chr3L 18339312 18339424 chr3L 18339475 18339502 4 99 0.5 4.0 2.2 1.2 190 chr3L 18339312 intergenic not near genes chr3L 18339407 intergenic not near genes chr3L 18339502 intergenic not near genes chr3L_4_18335001 chr3L_18335001 RAL-738 1425 chr3L 18344707 18344736 chr3L 18344786 18344815 4 76 2.0 4.0 3.0 1.0 108 chr3L 18344707 intergenic not near genes chr3L 18344761 intergenic not near genes chr3L 18344815 intergenic not near genes chr3L_4_18340001 chr3L_18340001 RAL-738 1426 chr3L 18376088 18376092 chr3L 18376177 18376181 4 89 7.0 8.0 7.5 0.5 93 chr3L 18376088 intergenic not near genes chr3L 18376134 intergenic not near genes chr3L 18376181 intergenic not near genes chr3L_4_18375001 chr3L_18375001 RAL-738 1427 chr3L 18406147 18406150 chr3L 18406223 18406226 4 76 6.0 9.0 7.5 0.5 79 chr3L 18406147 intergenic not near genes chr3L 18406186 intergenic not near genes chr3L 18406226 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-738 1428 chr3L 18408731 18408752 chr3L 18408817 18408829 6 84 12.0 7.5 9.8 0.6 98 chr3L 18408731 intergenic not near genes chr3L 18408780 intergenic not near genes chr3L 18408829 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-738 1429 chr3L 18436061 18436091 chr3L 18436159 18436189 9 96 2.5 1.5 2.0 3.0 128 chr3L 18436061 intergenic not near genes chr3L 18436125 intergenic not near genes chr3L 18436189 intergenic not near genes chr3L_9_18435001 chr3L_18435001 RAL-738 1430 chr3L 18456276 18456302 chr3L 18456364 18456382 9 87 3.5 3.5 3.5 2.0 106 chr3L 18456276 intergenic CR44670 - chr3L 18456329 intergenic CR44670 - chr3L 18456382 intergenic CR44670 - chr3L_9_18455001 chr3L_18455001 RAL-738 1431 chr3L 18496465 18496493 chr3L 18499561 18499589 9 3097 28.0 30.5 29.2 0.3 3124 chr3L 18496465 intron AstC-R2 - chr3L 18498027 intron AstC-R2 - chr3L 18499589 intron AstC-R2 - chr3L_9_18495001 chr3L_18495001 RAL-738 1432 chr3L 18506133 18506162 chr3L 18509596 18509621 F-element 9 3461 4.5 4.0 4.2 1.7 3488 chr3L 18506133 intergenic not near genes chr3L 18507877 intergenic not near genes chr3L 18509621 intergenic not near genes chr3L_9_18505001 chr3L_18505001 RAL-738 1433 chr3L 18514898 18514921 chr3L 18520092 18520111 BS 6 5190 6.0 2.5 4.2 1.2 5213 chr3L 18514898 intergenic not near genes chr3L 18517504 intergenic not near genes chr3L 18520111 intergenic not near genes chr3L_6_18515001 chr3L_18515001 RAL-738 1434 chr3L 18528633 18528656 chr3L 18537794 18537817 roo 4 9161 3.0 4.0 3.5 0.9 9184 chr3L 18528633 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537817 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-738 1435 chr3L 18558418 18558435 chr3L 18558501 18558519 5 84 6.0 13.0 9.5 0.5 101 chr3L 18558418 intergenic not near genes chr3L 18558468 intergenic not near genes chr3L 18558519 intergenic not near genes chr3L_5_18555001 chr3L_18555001 RAL-738 1436 chr3L 18567044 18567055 chr3L 18567124 18567141 4 84 8.5 11.5 10.0 0.4 97 chr3L 18567044 intron AstC-R1 + chr3L 18567092 intron AstC-R1 + chr3L 18567141 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-738 1437 chr3L 18581330 18581363 chr3L 18581406 18581439 7 76 12.0 13.5 12.8 0.5 109 chr3L 18581330 intergenic not near genes chr3L 18581384 intergenic not near genes chr3L 18581439 intergenic not near genes chr3L_7_18580001 chr3L_18580001 RAL-738 1438 chr3L 18586934 18586954 chr3L 18587042 18587062 4 108 12.5 13.0 12.8 0.3 128 chr3L 18586934 intergenic not near genes chr3L 18586998 intergenic not near genes chr3L 18587062 intergenic not near genes chr3L_4_18585001 chr3L_18585001 RAL-738 1439 chr3L 18593947 18593981 chr3L 18595927 18595960 Doc 13 1980 2.0 0.5 1.2 5.9 2013 chr3L 18593947 intergenic term - chr3L 18594954 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_13_18590001 chr3L_18590001 RAL-738 1440 chr3L 18607847 18607876 chr3L 18607969 18607980 7 117 2.0 2.0 2.0 2.3 133 chr3L 18607847 intron,intron,exon CG13380 -,CG4174 -,CG18231 + chr3L 18607914 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L 18607980 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L_7_18605001 chr3L_18605001 RAL-738 1441 chr3L 18647696 18647711 chr3L 18647789 18647804 5 93 7.0 4.5 5.8 0.7 108 chr3L 18647696 intron MYPT-75D + chr3L 18647750 intron MYPT-75D + chr3L 18647804 intron MYPT-75D + chr3L_5_18645001 chr3L_18645001 RAL-738 1442 chr3L 18656183 18656214 chr3L 18656268 18656299 7 83 15.0 15.5 15.2 0.4 116 chr3L 18656183 intron MYPT-75D + chr3L 18656241 intron MYPT-75D + chr3L 18656299 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-738 1443 chr3L 18679670 18679705 chr3L 18679776 18679811 8 103 20.5 13.0 16.8 0.4 141 chr3L 18679670 intergenic not near genes chr3L 18679740 intergenic not near genes chr3L 18679811 intergenic not near genes chr3L_8_18675001 chr3L_18675001 RAL-738 1444 chr3L 18721779 18721806 chr3L 18721865 18721897 9 89 13.5 13.5 13.5 0.6 118 chr3L 18721779 intergenic CG12477 - chr3L 18721838 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_9_18720001 chr3L_18720001 RAL-738 1445 chr3L 18741545 18741560 chr3L 18741768 18741783 4 220 6.5 12.5 9.5 0.4 238 chr3L 18741545 intergenic not near genes chr3L 18741664 intergenic not near genes chr3L 18741783 intergenic not near genes chr3L_4_18740001 chr3L_18740001 RAL-738 1446 chr3L 18753549 18753565 chr3L 18753631 18753647 4 82 6.5 8.5 7.5 0.5 98 chr3L 18753549 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753647 intron ftz-f1 - chr3L_4_18750001 chr3L_18750001 RAL-738 1447 chr3L 18772406 18772442 chr3L 18781087 18781109 roo 17 8679 5.0 10.0 7.5 2.0 8703 chr3L 18772406 intron ftz-f1 - chr3L 18776758 intron ftz-f1 - chr3L 18781109 intron ftz-f1 - chr3L_17_18775001 chr3L_18775001 RAL-738 1448 chr3L 18810146 18810177 chr3L 18810222 18810258 5 80 3.0 0.0 1.5 2.0 112 chr3L 18810146 intron CG14073 - chr3L 18810202 intron CG14073 - chr3L 18810258 intron CG14073 - chr3L_5_18810001 chr3L_18810001 RAL-738 1449 chr3L 18838748 18838762 chr3L 18838846 18838860 4 98 8.5 9.0 8.8 0.4 112 chr3L 18838748 intron Indy - chr3L 18838804 intron Indy - chr3L 18838860 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-738 1450 chr3L 18846659 18846686 chr3L 18846747 18846774 9 86 5.5 5.0 5.2 1.5 115 chr3L 18846659 intergenic Indy - chr3L 18846716 intergenic Indy - chr3L 18846774 intergenic not near genes chr3L_9_18845001 chr3L_18845001 RAL-738 1451 chr3L 18868980 18868998 chr3L 18869061 18869079 5 81 13.0 11.5 12.2 0.4 99 chr3L 18868980 3` UTR Dysb + chr3L 18869030 3` UTR Dysb + chr3L 18869079 3` UTR Dysb + chr3L_5_18865001 chr3L_18865001 RAL-738 1452 chr3L 18929959 18929987 chr3L 18930043 18930070 4 78 7.5 3.0 5.2 0.6 111 chr3L 18929959 intron CG32204 - chr3L 18930014 intron CG32204 - chr3L 18930070 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-738 1453 chr3L 18933100 18933127 chr3L 18933185 18933212 12 85 9.0 9.0 9.0 1.2 112 chr3L 18933100 intron CG32204 - chr3L 18933156 intron CG32204 - chr3L 18933212 intron CG32204 - chr3L_12_18930001 chr3L_18930001 RAL-738 1454 chr3L 18969553 18969576 chr3L 18969628 18969652 5 74 8.5 10.5 9.5 0.5 99 chr3L 18969553 intergenic not near genes chr3L 18969602 intergenic not near genes chr3L 18969652 intergenic not near genes chr3L_5_18965001 chr3L_18965001 RAL-738 1455 chr3L 19018833 19018847 chr3L 19018923 19018938 7 91 14.0 13.5 13.8 0.5 105 chr3L 19018833 intron nkd - chr3L 19018886 intron nkd - chr3L 19018938 intron nkd - chr3L_7_19015001 chr3L_19015001 RAL-738 1456 chr3L 19100466 19100497 chr3L 19101129 19101160 6 665 17.0 18.5 17.8 0.3 694 chr3L 19100466 intergenic Gem2 - chr3L 19100813 intergenic Gem2 - chr3L 19101160 intergenic not near genes chr3L_6_19100001 chr3L_19100001 RAL-738 1457 chr3L 19115633 19115670 chr3L 19115813 19115850 BS 8 176 5.5 7.5 6.5 1.1 217 chr3L 19115633 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115850 intron CG14082 - chr3L_8_19115001 chr3L_19115001 RAL-738 1458 chr3L 19117040 19117075 chr3L 19124487 19124522 mdg1 16 7442 6.0 5.0 5.5 2.5 7482 chr3L 19117040 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_16_19120001 chr3L_19120001 RAL-738 1459 chr3L 19127371 19127396 chr3L 19127447 19127466 5 74 11.5 12.0 11.8 0.4 95 chr3L 19127371 intron CG14082 - chr3L 19127418 intron CG14082 - chr3L 19127466 intron CG14082 - chr3L_5_19125001 chr3L_19125001 RAL-738 1460 chr3L 19127736 19127757 chr3L 19127821 19127841 7 82 18.0 11.5 14.8 0.4 105 chr3L 19127736 intron CG14082 - chr3L 19127788 intron CG14082 - chr3L 19127841 intron CG14082 - chr3L_7_19125001 chr3L_19125001 RAL-738 1461 chr3L 19182384 19182420 chr3L 19182465 19182501 12 77 1.0 2.0 1.5 4.8 117 chr3L 19182384 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182501 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-738 1462 chr3L 19192088 19192114 chr3L 19192176 19192198 5 84 13.0 13.5 13.2 0.4 110 chr3L 19192088 intron fz2 - chr3L 19192143 intron fz2 - chr3L 19192198 intron fz2 - chr3L_5_19190001 chr3L_19190001 RAL-738 1463 chr3L 19208056 19208091 chr3L 19209430 19209465 Doc 14 1373 2.5 3.5 3.0 3.5 1409 chr3L 19208056 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209465 intron fz2 - chr3L_14_19205001 chr3L_19205001 RAL-738 1464 chr3L 19214783 19214901 chr3L 19214875 19214982 5 83 5.0 5.0 5.0 0.8 199 chr3L 19214783 intron fz2 - chr3L 19214882 intron fz2 - chr3L 19214982 intron fz2 - chr3L_5_19210001 chr3L_19210001 RAL-738 1465 chr3L 19269818 19269843 chr3L 19270021 19270027 6 197 12.5 15.0 13.8 0.4 209 chr3L 19269818 intron,exon CG14085 +,CG14088 - chr3L 19269922 intron,exon CG14085 +,CG14088 - chr3L 19270027 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-738 1466 chr3L 19282272 19282283 chr3L 19282368 19282378 5 96 16.0 10.0 13.0 0.4 106 chr3L 19282272 3` UTR Gbs-76A - chr3L 19282325 3` UTR Gbs-76A - chr3L 19282378 3` UTR Gbs-76A - chr3L_5_19280001 chr3L_19280001 RAL-738 1467 chr3L 19282289 19282297 chr3L 19282363 19282370 6 88 13.5 9.5 11.5 0.5 81 chr3L 19282289 3` UTR Gbs-76A - chr3L 19282330 3` UTR Gbs-76A - chr3L 19282370 3` UTR Gbs-76A - chr3L_6_19280001 chr3L_19280001 RAL-738 1468 chr3L 19342768 19342775 chr3L 19342859 19342866 6 91 4.0 5.0 4.5 1.1 98 chr3L 19342768 3` UTR CG32206 - chr3L 19342817 3` UTR CG32206 - chr3L 19342866 3` UTR CG32206 - chr3L_6_19340001 chr3L_19340001 RAL-738 1469 chr3L 19365919 19365926 chr3L 19366016 19366023 9 97 0.5 5.5 3.0 2.2 104 chr3L 19365919 intron CG32206 - chr3L 19365971 intron CG32206 - chr3L 19366023 intron CG32206 - chr3L_9_19365001 chr3L_19365001 RAL-738 1470 chr3L 19430413 19430432 chr3L 19430491 19430500 5 76 3.5 13.0 8.2 0.5 87 chr3L 19430413 intergenic not near genes chr3L 19430456 intergenic not near genes chr3L 19430500 intergenic not near genes chr3L_5_19430001 chr3L_19430001 RAL-738 1471 chr3L 19439175 19439284 chr3L 19439254 19439370 7 77 5.5 5.5 5.5 1.1 195 chr3L 19439175 intergenic not near genes chr3L 19439272 intergenic not near genes chr3L 19439370 intergenic not near genes chr3L_7_19435001 chr3L_19435001 RAL-738 1472 chr3L 19488479 19488498 chr3L 19488561 19488567 9 80 12.0 3.0 7.5 1.1 88 chr3L 19488479 intergenic pncr009:3L -,CG32212 + chr3L 19488523 intergenic pncr009:3L -,CG32212 + chr3L 19488567 intergenic pncr009:3L -,CG32212 + chr3L_9_19485001 chr3L_19485001 RAL-738 1473 chr3L 19544237 19544249 chr3L 19544313 19544325 5 76 12.0 8.0 10.0 0.5 88 chr3L 19544237 intergenic CG9279 -,l(3)76BDr - chr3L 19544281 intergenic l(3)76BDr -,CG9279 - chr3L 19544325 intergenic l(3)76BDr -,CG9279 - chr3L_5_19540001 chr3L_19540001 RAL-738 1474 chr3L 19554821 19554847 chr3L 19554913 19554936 6 93 10.5 14.0 12.2 0.5 115 chr3L 19554821 intergenic CG9300 + chr3L 19554878 intergenic CG9300 + chr3L 19554936 intergenic CG9300 + chr3L_6_19550001 chr3L_19550001 RAL-738 1475 chr3L 19644947 19644968 chr3L 19645054 19645075 6 107 13.0 14.5 13.8 0.4 128 chr3L 19644947 intergenic not near genes chr3L 19645011 intergenic not near genes chr3L 19645075 intergenic not near genes chr3L_6_19645001 chr3L_19645001 RAL-738 1476 chr3L 19673890 19673907 chr3L 19673971 19673988 7 81 9.5 13.0 11.2 0.6 98 chr3L 19673890 intergenic not near genes chr3L 19673939 intergenic not near genes chr3L 19673988 intergenic not near genes chr3L_7_19670001 chr3L_19670001 RAL-738 1477 chr3L 19676085 19676106 chr3L 19676164 19676185 6 79 16.5 12.0 14.2 0.4 100 chr3L 19676085 intergenic not near genes chr3L 19676135 intergenic not near genes chr3L 19676185 intergenic not near genes chr3L_6_19675001 chr3L_19675001 RAL-738 1478 chr3L 19703848 19703873 chr3L 19704002 19704022 5 148 12.5 14.0 13.2 0.4 174 chr3L 19703848 intron serp - chr3L 19703935 intron serp - chr3L 19704022 intron serp - chr3L_5_19700001 chr3L_19700001 RAL-738 1479 chr3L 19820301 19820315 chr3L 19827850 19827864 412 6 7549 3.5 4.0 3.8 1.2 7563 chr3L 19820301 intron Deaf1 + chr3L 19824082 intron Deaf1 + chr3L 19827864 intron Deaf1 + chr3L_6_19820001 chr3L_19820001 RAL-738 1480 chr3L 19848505 19848533 chr3L 19857695 19857708 roo 8 9186 6.0 6.5 6.2 1.1 9203 chr3L 19848505 intron Papss + chr3L 19853106 intron Papss + chr3L 19857708 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-738 1481 chr3L 19867189 19867191 chr3L 19867259 19867269 4 75 16.5 11.5 14.0 0.3 80 chr3L 19867189 intergenic Rab8 - chr3L 19867229 intergenic Rab8 - chr3L 19867269 intergenic Rab8 - chr3L_4_19865001 chr3L_19865001 RAL-738 1482 chr3L 19867193 19867205 chr3L 19867256 19867277 6 71 15.0 11.5 13.2 0.4 84 chr3L 19867193 intergenic Rab8 - chr3L 19867235 intergenic Rab8 - chr3L 19867277 intergenic Rab8 - chr3L_6_19865001 chr3L_19865001 RAL-738 1483 chr3L 19934584 19934610 chr3L 19934661 19934688 8 76 14.5 10.0 12.2 0.6 104 chr3L 19934584 intergenic CR45678 + chr3L 19934636 intergenic CR45678 + chr3L 19934688 intergenic CR45678 + chr3L_8_19930001 chr3L_19930001 RAL-738 1484 chr3L 19961281 19961308 chr3L 19961491 19961504 6 208 0.5 5.0 2.8 1.6 223 chr3L 19961281 intron Ac76E + chr3L 19961392 intron Ac76E + chr3L 19961504 intron Ac76E + chr3L_6_19960001 chr3L_19960001 RAL-738 1485 chr3L 19962958 19962975 chr3L 19963036 19963053 7 78 7.0 16.5 11.8 0.5 95 chr3L 19962958 intron Ac76E + chr3L 19963006 intron Ac76E + chr3L 19963053 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-738 1486 chr3L 19981204 19981233 chr3L 19981284 19981313 13 80 5.5 4.0 4.8 2.2 109 chr3L 19981204 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981313 intergenic CG17732 + chr3L_13_19980001 chr3L_19980001 RAL-738 1487 chr3L 20038817 20038851 chr3L 20038995 20039028 5 177 14.5 11.5 13.0 0.4 211 chr3L 20038817 intergenic not near genes chr3L 20038922 intergenic not near genes chr3L 20039028 intergenic not near genes chr3L_5_20035001 chr3L_20035001 RAL-738 1488 chr3L 20057561 20057582 chr3L 20057674 20057695 5 112 6.0 11.5 8.8 0.5 134 chr3L 20057561 intergenic not near genes chr3L 20057628 intergenic not near genes chr3L 20057695 intergenic not near genes chr3L_5_20055001 chr3L_20055001 RAL-738 1489 chr3L 20066782 20066819 chr3L 20066899 20066936 7 115 13.5 12.5 13.0 0.5 154 chr3L 20066782 intron sNPF-R - chr3L 20066859 intron sNPF-R - chr3L 20066936 intron sNPF-R - chr3L_7_20065001 chr3L_20065001 RAL-738 1490 chr3L 20081743 20081770 chr3L 20081826 20081853 9 82 10.5 9.5 10.0 0.8 110 chr3L 20081743 intron sNPF-R - chr3L 20081798 intron sNPF-R - chr3L 20081853 intron sNPF-R - chr3L_9_20080001 chr3L_20080001 RAL-738 1491 chr3L 20096262 20096279 chr3L 20096370 20096378 4 106 6.5 11.0 8.8 0.4 116 chr3L 20096262 intergenic not near genes chr3L 20096320 intergenic not near genes chr3L 20096378 intergenic not near genes chr3L_4_20095001 chr3L_20095001 RAL-738 1492 chr3L 20113660 20113686 chr3L 20122917 20122943 roo 11 9257 5.0 4.0 4.5 2.0 9283 chr3L 20113660 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122943 intergenic not near genes chr3L_11_20115001 chr3L_20115001 RAL-738 1493 chr3L 20143088 20143096 chr3L 20143168 20143176 5 79 6.5 5.0 5.8 0.7 88 chr3L 20143088 intergenic not near genes chr3L 20143132 intergenic not near genes chr3L 20143176 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-738 1494 chr3L 20143097 20143114 chr3L 20143165 20143194 7 78 3.0 4.5 3.8 1.5 97 chr3L 20143097 intergenic not near genes chr3L 20143146 intergenic not near genes chr3L 20143194 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-738 1495 chr3L 20150736 20150749 chr3L 20150867 20150880 4 131 7.5 11.0 9.2 0.4 144 chr3L 20150736 3` UTR CG42674 - chr3L 20150808 3` UTR CG42674 - chr3L 20150880 3` UTR CG42674 - chr3L_4_20150001 chr3L_20150001 RAL-738 1496 chr3L 20158908 20158930 chr3L 20159040 20159072 6 140 8.0 10.0 9.0 0.6 164 chr3L 20158908 intron CG42674 - chr3L 20158990 intron CG42674 - chr3L 20159072 intron CG42674 - chr3L_6_20155001 chr3L_20155001 RAL-738 1497 chr3L 20177246 20177269 chr3L 20177335 20177358 6 88 20.0 17.5 18.8 0.3 112 chr3L 20177246 intron CG42674 - chr3L 20177302 intron CG42674 - chr3L 20177358 intron CG42674 - chr3L_6_20175001 chr3L_20175001 RAL-738 1498 chr3L 20257335 20257360 chr3L 20258455 20258480 pogo 14 1119 2.0 5.5 3.8 2.9 1145 chr3L 20257335 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258480 intron rdgC + chr3L_14_20255001 chr3L_20255001 RAL-738 1499 chr3L 20476752 20476786 chr3L 20484351 20484385 springer 18 7598 2.5 6.5 4.5 3.3 7633 chr3L 20476752 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484385 3` UTR ZnT77C - chr3L_18_20480001 chr3L_20480001 RAL-738 1500 chr3L 20666350 20666372 chr3L 20666427 20666449 8 77 7.0 6.5 6.8 1.0 99 chr3L 20666350 intergenic not near genes chr3L 20666400 intergenic not near genes chr3L 20666449 intergenic not near genes chr3L_8_20665001 chr3L_20665001 RAL-738 1501 chr3L 20710758 20710784 chr3L 20710835 20710860 7 77 11.0 10.5 10.8 0.6 102 chr3L 20710758 intergenic not near genes chr3L 20710809 intergenic not near genes chr3L 20710860 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-738 1502 chr3L 20849271 20849301 chr3L 20849350 20849380 13 77 7.5 3.0 5.2 2.1 109 chr3L 20849271 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_13_20845001 chr3L_20845001 RAL-738 1503 chr3L 20902715 20902728 chr3L 20902790 20902792 6 77 12.0 15.5 13.8 0.4 77 chr3L 20902715 intergenic CR45383 + chr3L 20902754 intergenic CR45383 + chr3L 20902792 intergenic CR45383 + chr3L_6_20900001 chr3L_20900001 RAL-738 1504 chr3L 20917103 20917118 chr3L 20917168 20917172 6 66 13.5 15.0 14.2 0.4 69 chr3L 20917103 intergenic not near genes chr3L 20917138 intergenic not near genes chr3L 20917172 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-738 1505 chr3L 21024127 21024142 chr3L 21024304 21024320 4 176 16.0 14.5 15.2 0.2 193 chr3L 21024127 intron skd - chr3L 21024224 intron skd - chr3L 21024320 intron skd - chr3L_4_21020001 chr3L_21020001 RAL-738 1506 chr3L 21047639 21047665 chr3L 21047762 21047768 7 120 6.5 9.5 8.0 0.8 129 chr3L 21047639 intron siz + chr3L 21047704 intron siz + chr3L 21047768 intron siz + chr3L_7_21045001 chr3L_21045001 RAL-738 1507 chr3L 21064797 21064825 chr3L 21064913 21064920 6 112 15.5 12.5 14.0 0.4 123 chr3L 21064797 intron siz + chr3L 21064858 intron siz + chr3L 21064920 intron siz + chr3L_6_21060001 chr3L_21060001 RAL-738 1508 chr3L 21082213 21082234 chr3L 21082291 21082306 11 77 3.0 6.5 4.8 1.9 93 chr3L 21082213 intron ko - chr3L 21082260 intron ko - chr3L 21082306 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-738 1509 chr3L 21100509 21100537 chr3L 21100771 21100799 5 261 7.0 8.0 7.5 0.6 290 chr3L 21100509 intron ko - chr3L 21100654 intron ko - chr3L 21100799 intron ko - chr3L_5_21100001 chr3L_21100001 RAL-738 1510 chr3L 21136753 21136782 chr3L 21136838 21136867 11 85 18.0 11.5 14.8 0.7 114 chr3L 21136753 3` UTR Ac78C - chr3L 21136810 3` UTR Ac78C - chr3L 21136867 3` UTR Ac78C - chr3L_11_21135001 chr3L_21135001 RAL-738 1511 chr3L 21151866 21151896 chr3L 21156950 21156980 flea 16 5083 4.0 4.5 4.2 3.1 5114 chr3L 21151866 intron Ac78C - chr3L 21154423 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_16_21150001 chr3L_21150001 RAL-738 1512 chr3L 21158605 21158627 chr3L 21158672 21158673 7 70 16.5 16.0 16.2 0.4 68 chr3L 21158605 intron Ac78C - chr3L 21158639 intron Ac78C - chr3L 21158673 intron Ac78C - chr3L_7_21155001 chr3L_21155001 RAL-738 1513 chr3L 21159509 21159528 chr3L 21159604 21159623 5 91 14.5 18.5 16.5 0.3 114 chr3L 21159509 intron Ac78C - chr3L 21159566 intron Ac78C - chr3L 21159623 intron Ac78C - chr3L_5_21155001 chr3L_21155001 RAL-738 1514 chr3L 21172836 21172867 chr3L 21172936 21172963 4 100 13.0 11.5 12.2 0.3 127 chr3L 21172836 intergenic chb +,asparagine-synthetase + chr3L 21172900 5` UTR chb + chr3L 21172963 5` UTR chb + chr3L_4_21170001 chr3L_21170001 RAL-738 1515 chr3L 21243761 21243772 chr3L 21251309 21251319 412 6 7553 3.5 5.5 4.5 1.1 7558 chr3L 21243761 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251319 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-738 1516 chr3L 21306145 21306181 chr3L 21315304 21315330 roo 15 9158 1.0 4.5 2.8 3.9 9185 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310738 intron Pc - chr3L 21315330 3` UTR Pc - chr3L_15_21310001 chr3L_21310001 RAL-738 1517 chr3L 21321096 21321124 chr3L 21321227 21321255 6 131 8.5 10.0 9.2 0.6 159 chr3L 21321096 intron Rab26 + chr3L 21321176 intron Rab26 + chr3L 21321255 intron Rab26 + chr3L_6_21320001 chr3L_21320001 RAL-738 1518 chr3L 21361727 21361751 chr3L 21362681 21362705 G2 12 952 8.0 7.5 7.8 1.4 978 chr3L 21361727 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362705 intergenic not near genes chr3L_12_21360001 chr3L_21360001 RAL-738 1519 chr3L 21372719 21372743 chr3L 21379227 21379251 McClintock 9 6508 7.0 10.0 8.5 0.9 6532 chr3L 21372719 intergenic not near genes chr3L 21375985 intergenic not near genes chr3L 21379251 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-738 1520 chr3L 21408468 21408487 chr3L 21408546 21408562 6 75 14.5 18.5 16.5 0.3 94 chr3L 21408468 intron rgn + chr3L 21408515 intron rgn + chr3L 21408562 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-738 1521 chr3L 21415140 21415166 chr3L 21415223 21415249 5 83 17.0 18.5 17.8 0.3 109 chr3L 21415140 intron rgn + chr3L 21415194 intron rgn + chr3L 21415249 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-738 1522 chr3L 21419087 21419119 chr3L 21424924 21424959 9 5840 32.0 33.0 32.5 0.3 5872 chr3L 21419087 intron rgn + chr3L 21422023 exon,intron rgn +,barc - chr3L 21424959 exon barc - chr3L_9_21420001 chr3L_21420001 RAL-738 1523 chr3L 4341332 4341337 chr3L 21448027 21448027 5 17106694 27.0 26.5 26.8 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-738 1524 chr3L 16736388 16736393 chr3L 21448027 21448027 4 4711636 5.5 26.5 16.0 0.2 4711639 chr3L 16736388 intron CG9701 + chr3L 19092208 intergenic MESR6 + chr3L 21448027 3` UTR Syx7 + chr3L_4_19090001 chr3L_19090001 RAL-738 1525 chr3L 21498834 21498870 chr3L 21500470 21500487 1360 5 1632 5.5 8.5 7.0 0.6 1653 chr3L 21498834 intron Glg1 - chr3L 21499660 intron Glg1 - chr3L 21500487 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-738 1526 chr3L 21600480 21600496 chr3L 21600591 21600607 4 111 31.0 33.0 32.0 0.1 127 chr3L 21600480 intron TfAP-2 + chr3L 21600544 intron TfAP-2 + chr3L 21600607 intron TfAP-2 + chr3L_4_21600001 chr3L_21600001 RAL-738 1527 chr3L 21599061 21599075 chr3L 21602410 21602443 5 3355 31.5 30.5 31.0 0.2 3382 chr3L 21599061 intron TfAP-2 + chr3L 21600752 intron TfAP-2 + chr3L 21602443 intron TfAP-2 + chr3L_5_21600001 chr3L_21600001 RAL-738 1528 chr3L 21767035 21767070 chr3L 21767116 21767149 7 81 11.5 15.0 13.2 0.5 114 chr3L 21767035 intron Syn1 - chr3L 21767092 intron Syn1 - chr3L 21767149 intron Syn1 - chr3L_7_21765001 chr3L_21765001 RAL-738 1529 chr3L 21769062 21769087 chr3L 21769149 21769174 9 87 9.5 14.0 11.8 0.7 112 chr3L 21769062 intron,intron Syn1 -,CG42689 + chr3L 21769118 intron,intron Syn1 -,CG42689 + chr3L 21769174 intron,intron Syn1 -,CG42689 + chr3L_9_21765001 chr3L_21765001 RAL-738 1530 chr3L 21776671 21776701 chr3L 21776758 21776788 10 86 1.5 2.5 2.0 3.3 117 chr3L 21776671 intron,intron CG42689 +,CG42552 + chr3L 21776730 intron,intron CG42689 +,CG42552 + chr3L 21776788 intron,intron CG42689 +,CG42552 + chr3L_10_21775001 chr3L_21775001 RAL-738 1531 chr3L 21799950 21799969 chr3L 21800035 21800051 5 84 17.5 16.0 16.8 0.3 101 chr3L 21799950 intergenic not near genes chr3L 21800000 intergenic not near genes chr3L 21800051 intergenic not near genes chr3L_5_21800001 chr3L_21800001 RAL-738 1532 chr3L 21836727 21836761 chr3L 21836813 21836847 13 82 12.0 12.0 12.0 1.0 120 chr3L 21836727 3` UTR P5CDh1 - chr3L 21836787 3` UTR P5CDh1 - chr3L 21836847 3` UTR P5CDh1 - chr3L_13_21835001 chr3L_21835001 RAL-738 1533 chr3L 21845209 21845261 chr3L 21845345 21845493 10 175 1.5 3.0 2.2 3.1 284 chr3L 21845209 5` UTR mub + chr3L 21845351 intron mub + chr3L 21845493 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-738 1534 chr3L 21872421 21872455 chr3L 21872500 21872534 15 78 14.0 15.0 14.5 1.0 113 chr3L 21872421 intron mub + chr3L 21872478 intron mub + chr3L 21872534 intron mub + chr3L_15_21870001 chr3L_21870001 RAL-738 1535 chr3L 21901024 21901042 chr3L 21901117 21901135 4 93 9.0 15.5 12.2 0.3 111 chr3L 21901024 intron mub + chr3L 21901080 intron mub + chr3L 21901135 intron mub + chr3L_4_21900001 chr3L_21900001 RAL-738 1536 chr3L 21927183 21927199 chr3L 21927269 21927285 4 86 13.0 15.0 14.0 0.3 102 chr3L 21927183 3` UTR mub + chr3L 21927234 3` UTR mub + chr3L 21927285 3` UTR mub + chr3L_4_21925001 chr3L_21925001 RAL-738 1537 chr3L 21975679 21975711 chr3L 21975913 21975939 9 233 13.0 13.5 13.2 0.6 260 chr3L 21975679 intron CG7470 + chr3L 21975809 intron CG7470 + chr3L 21975939 intron CG7470 + chr3L_9_21975001 chr3L_21975001 RAL-738 1538 chr3L 21994438 21994458 chr3L 21994519 21994539 4 81 17.0 13.5 15.2 0.2 101 chr3L 21994438 intergenic not near genes chr3L 21994488 intergenic not near genes chr3L 21994539 intergenic not near genes chr3L_4_21990001 chr3L_21990001 RAL-738 1539 chr3L 22006917 22006927 chr3L 22007008 22007018 6 91 17.5 12.5 15.0 0.4 101 chr3L 22006917 intergenic not near genes chr3L 22006968 intergenic not near genes chr3L 22007018 intergenic not near genes chr3L_6_22005001 chr3L_22005001 RAL-738 1540 chr3L 22016370 22016381 chr3L 22016486 22016497 5 116 15.5 5.5 10.5 0.4 127 chr3L 22016370 intergenic not near genes chr3L 22016434 intergenic not near genes chr3L 22016497 intergenic not near genes chr3L_5_22015001 chr3L_22015001 RAL-738 1541 chr3L 22033691 22033721 chr3L 22033767 22033799 15 78 5.0 4.5 4.8 2.6 108 chr3L 22033691 intergenic not near genes chr3L 22033745 intergenic not near genes chr3L 22033799 intergenic not near genes chr3L_15_22030001 chr3L_22030001 RAL-738 1542 chr3L 22046182 22046210 chr3L 22046285 22046313 7 98 21.0 16.0 18.5 0.4 131 chr3L 22046182 intron Oct-TyrR + chr3L 22046248 intron Oct-TyrR + chr3L 22046313 intron Oct-TyrR + chr3L_7_22045001 chr3L_22045001 RAL-738 1543 chr3L 22099676 22099690 chr3L 22105862 22105876 3S18 6 6186 13.5 4.0 8.8 0.6 6200 chr3L 22099676 intergenic not near genes chr3L 22102776 intergenic not near genes chr3L 22105876 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-738 1544 chr3L 22099692 22099707 chr3L 22105861 22105893 3S18 6 6176 7.0 4.0 5.5 0.9 6201 chr3L 22099692 intergenic not near genes chr3L 22102792 intergenic not near genes chr3L 22105893 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-738 1545 chr3L 22130502 22130519 chr3L 22130648 22130663 7 144 2.0 6.0 4.0 1.4 161 chr3L 22130502 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130663 intergenic not near genes chr3L_7_22130001 chr3L_22130001 RAL-738 1546 chr3L 22137657 22137687 chr3L 22137744 22137774 6 87 11.0 10.5 10.8 0.5 117 chr3L 22137657 intron olf413 + chr3L 22137716 intron olf413 + chr3L 22137774 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-738 1547 chr3L 22212915 22212953 chr3L 22213066 22213104 12 143 9.5 8.0 8.8 1.2 189 chr3L 22212915 intron olf413 + chr3L 22213010 intron olf413 + chr3L 22213104 intron olf413 + chr3L_12_22210001 chr3L_22210001 RAL-738 1548 chr3L 22255906 22255924 chr3L 22255981 22255995 7 76 25.5 26.5 26.0 0.3 89 chr3L 22255906 intergenic not near genes chr3L 22255950 intergenic not near genes chr3L 22255995 intergenic not near genes chr3L_7_22255001 chr3L_22255001 RAL-738 1549 chr3L 22309072 22309104 chr3L 22309157 22309171 4 80 9.0 9.5 9.2 0.4 99 chr3L 22309072 intron Ten-m - chr3L 22309122 intron Ten-m - chr3L 22309171 intron Ten-m - chr3L_4_22305001 chr3L_22305001 RAL-738 1550 chr3L 22328083 22328090 chr3L 22328157 22328182 5 91 16.0 13.5 14.8 0.3 99 chr3L 22328083 intron Ten-m - chr3L 22328132 intron Ten-m - chr3L 22328182 intron Ten-m - chr3L_5_22325001 chr3L_22325001 RAL-738 1551 chr3L 22358397 22358415 chr3L 22358472 22358477 4 73 18.5 15.5 17.0 0.2 80 chr3L 22358397 intron Ten-m - chr3L 22358437 intron Ten-m - chr3L 22358477 intron Ten-m - chr3L_4_22355001 chr3L_22355001 RAL-738 1552 chr3L 22366707 22366728 chr3L 22366785 22366806 6 78 13.0 16.0 14.5 0.4 99 chr3L 22366707 intron Ten-m - chr3L 22366756 intron Ten-m - chr3L 22366806 intron Ten-m - chr3L_6_22365001 chr3L_22365001 RAL-738 1553 chr3L 22447197 22447232 chr3L 22447288 22447322 10 89 11.5 15.0 13.2 0.7 125 chr3L 22447197 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-738 1554 chr3L 22555780 22555800 chr3L 22563240 22563244 blood 7 7457 4.5 4.0 4.2 1.3 7464 chr3L 22555780 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563244 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-738 1555 chr3L 22570426 22570453 chr3L 22570570 22570597 8 144 17.5 17.0 17.2 0.4 171 chr3L 22570426 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570597 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-738 1556 chr3L 22577632 22577646 chr3L 22582406 22582434 Doc 6 4782 3.5 8.5 6.0 0.9 4802 chr3L 22577632 intergenic not near genes chr3L 22580033 intergenic not near genes chr3L 22582434 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-738 1557 chr3L 22577647 22577650 chr3L 22582405 22582417 Doc 5 4773 3.0 8.0 5.5 0.8 4770 chr3L 22577647 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582417 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-738 1558 chr3L 22617195 22617221 chr3L 22624642 22624656 blood 15 7449 4.0 3.5 3.8 3.1 7461 chr3L 22617195 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624656 intron CG14459 - chr3L_15_22620001 chr3L_22620001 RAL-738 1559 chr3L 22663210 22663231 chr3L 22663286 22663323 7 89 12.0 10.0 11.0 0.6 113 chr3L 22663210 intergenic not near genes chr3L 22663266 intergenic not near genes chr3L 22663323 intergenic not near genes chr3L_7_22660001 chr3L_22660001 RAL-738 1560 chr3L 22674438 22674464 chr3L 22674516 22674542 11 77 8.0 6.0 7.0 1.4 104 chr3L 22674438 intron CG14457 + chr3L 22674490 intron CG14457 + chr3L 22674542 intron CG14457 + chr3L_11_22670001 chr3L_22670001 RAL-738 1561 chr3L 22761385 22761419 chr3L 22766819 22766849 Ivk 16 5430 5.0 4.0 4.5 2.9 5464 chr3L 22761385 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766849 intron SPoCk + chr3L_16_22760001 chr3L_22760001 RAL-738 1562 chr3L 22838593 22838619 chr3L 22838668 22838700 9 79 13.5 9.5 11.5 0.7 107 chr3L 22838593 intergenic CG11226 + chr3L 22838646 intergenic CG11226 + chr3L 22838700 intergenic not near genes chr3L_9_22835001 chr3L_22835001 RAL-738 1563 chr3L 22853462 22853718 chr3L 22853549 22853794 11 85 11.0 17.0 14.0 0.7 332 chr3L 22853462 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853628 5` UTR CR43426 + chr3L 22853794 5` UTR CR43426 + chr3L_11_22850001 chr3L_22850001 RAL-738 1564 chr3L 22865984 22866016 chr3L 22867117 22867131 Doc 14 1132 3.0 3.0 3.0 3.5 1147 chr3L 22865984 intron CG33170 + chr3L 22866558 intron CG33170 + chr3L 22867131 intron CG33170 + chr3L_14_22865001 chr3L_22865001 RAL-738 1565 chr3L 22916367 22916390 chr3L 22916448 22916480 5 88 15.0 18.0 16.5 0.3 113 chr3L 22916367 intron CG12768 + chr3L 22916424 intron CG12768 + chr3L 22916480 intron CG12768 + chr3L_5_22915001 chr3L_22915001 RAL-738 1566 chr3L 22974634 22974654 chr3L 22974792 22974825 4 168 10.5 8.5 9.5 0.4 191 chr3L 22974634 intergenic not near genes chr3L 22974730 intergenic not near genes chr3L 22974825 intergenic not near genes chr3L_4_22970001 chr3L_22970001 RAL-738 1567 chr3L 22989869 22989893 chr3L 22996834 22996867 297 10 6971 3.5 7.0 5.2 1.6 6998 chr3L 22989869 intergenic not near genes chr3L 22993368 intergenic not near genes chr3L 22996867 intergenic not near genes chr3L_10_22990001 chr3L_22990001 RAL-738 1568 chr3L 23004909 23004931 chr3L 23005235 23005253 4 325 7.5 12.0 9.8 0.4 344 chr3L 23004909 intron nrm + chr3L 23005081 intron nrm + chr3L 23005253 intron nrm + chr3L_4_23005001 chr3L_23005001 RAL-738 1569 chr3L 23096072 23096104 chr3L 23096155 23096171 19 76 4.0 2.0 3.0 4.8 99 chr3L 23096072 intergenic not near genes chr3L 23096122 intergenic not near genes chr3L 23096171 intergenic not near genes chr3L_19_23095001 chr3L_23095001 RAL-738 1570 chr3L 23182819 23182853 chr3L 23182895 23182929 5 74 11.5 21.0 16.2 0.3 110 chr3L 23182819 intron CG34031 + chr3L 23182874 intron CG34031 + chr3L 23182929 intron CG34031 + chr3L_5_23180001 chr3L_23180001 RAL-738 1571 chr3L 23290486 23290513 chr3L 23295319 23295346 X-element 5 4829 10.5 5.5 8.0 0.6 4860 chr3L 23290486 intergenic not near genes chr3L 23292916 intergenic not near genes chr3L 23295346 intergenic not near genes chr3L_5_23290001 chr3L_23290001 RAL-738 1572 chr3L 23449697 23449718 chr3L 23449774 23449795 6 76 17.0 13.5 15.2 0.4 98 chr3L 23449697 intergenic not near genes chr3L 23449746 intergenic not near genes chr3L 23449795 intergenic not near genes chr3L_6_23445001 chr3L_23445001 RAL-738 1573 chr3L 24012406 24012439 chr3L 24020747 24020773 roo 10 8338 3.0 4.5 3.8 2.1 8367 chr3L 24012406 intergenic not near genes chr3L 24016590 intergenic not near genes chr3L 24020773 intergenic not near genes chr3L_10_24015001 chr3L_24015001 RAL-738 1574 chr3L 24021300 24021313 chr3L 24022440 24022470 1360 8 1152 5.0 5.5 5.2 1.3 1170 chr3L 24021300 intergenic not near genes chr3L 24021885 intergenic not near genes chr3L 24022470 intergenic not near genes chr3L_8_24020001 chr3L_24020001 RAL-738 1575 chr3L 24036794 24036813 chr3L 24036885 24036898 6 88 12.0 13.5 12.8 0.4 104 chr3L 24036794 intergenic not near genes chr3L 24036846 intergenic not near genes chr3L 24036898 intergenic not near genes chr3L_6_24035001 chr3L_24035001 RAL-738 1576 chr3L 24040668 24040699 chr3L 24040801 24040816 5 128 20.5 20.5 20.5 0.2 148 chr3L 24040668 intergenic not near genes chr3L 24040742 intergenic not near genes chr3L 24040816 intergenic not near genes chr3L_5_24040001 chr3L_24040001 RAL-738 1577 chr3L 24168786 24168818 chr3L 24176114 24176135 ZAM 7 7313 5.5 6.0 5.8 1.0 7349 chr3L 24168786 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176135 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-738 1578 chr3L 24324299 24324324 chr3L 24324394 24324404 6 92 1.5 2.5 2.0 2.0 105 chr3L 24324299 intergenic not near genes chr3L 24324352 intergenic not near genes chr3L 24324404 intergenic nvd + chr3L_6_24320001 chr3L_24320001 RAL-738 1579 chr3L 24363238 24363273 chr3L 24363315 24363350 10 74 2.0 3.0 2.5 2.9 112 chr3L 24363238 intron nvd + chr3L 24363294 intron nvd + chr3L 24363350 intron nvd + chr3L_10_24360001 chr3L_24360001 RAL-738 1580 chr3L 25106606 25106615 chr3L 25106671 25106677 4 71 14.0 13.5 13.8 0.3 71 chr3L 25106606 intergenic not near genes chr3L 25106642 intergenic not near genes chr3L 25106677 intergenic not near genes chr3L_4_25105001 chr3L_25105001 RAL-738 1581 chr3L 25464047 25464095 chr3L 25464109 25464189 4 81 13.0 11.5 12.2 0.3 142 chr3L 25464047 intergenic not near genes chr3L 25464118 intergenic not near genes chr3L 25464189 intergenic not near genes chr3L_4_25460001 chr3L_25460001 RAL-738 1582 chr3L 25513589 25513604 chr3L 25513666 25513683 4 75 12.5 10.5 11.5 0.3 94 chr3L 25513589 intron CG41343 - chr3L 25513636 intron CG41343 - chr3L 25513683 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-738 1583 chr3L 25628499 25628526 chr3L 25633265 25633297 F-element 16 4769 6.0 2.0 4.0 3.2 4798 chr3L 25628499 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633297 intron CG41343 - chr3L_16_25630001 chr3L_25630001 RAL-738 1584 chr3L 25886870 25887161 chr3L 25887273 25887315 7 329 0.5 1.5 1.0 3.5 445 chr3L 25886870 intron CG40178 - chr3L 25887092 intron CG40178 - chr3L 25887315 intron CG40178 - chr3L_7_25885001 chr3L_25885001 RAL-738 1585 chr3L 24948769 24948771 chr3L 25934975 25934991 diver2 4 986210 22.0 20.0 21.0 0.2 986222 chr3L 24948769 intergenic not near genes chr3L 25441880 intergenic not near genes chr3L 25934991 intron CG40178 - chr3L_4_25440001 chr3L_25440001 RAL-738 1586 chr3L 26694925 26694958 chr3L 26695005 26695024 14 76 4.5 1.5 3.0 3.5 99 chr3L 26694925 intergenic not near genes chr3L 26694974 intergenic not near genes chr3L 26695024 intergenic not near genes chr3L_14_26690001 chr3L_26690001 RAL-738 1587 chr3L 27167955 27167980 chr3L 27168067 27168088 9 111 4.0 5.5 4.8 1.6 133 chr3L 27167955 intergenic not near genes chr3L 27168022 intergenic not near genes chr3L 27168088 intergenic not near genes chr3L_9_27165001 chr3L_27165001 RAL-738 1588 chr3L 27390435 27390707 chr3L 27390634 27390786 5 127 42.5 47.5 45.0 0.1 351 chr3L 27390435 intron Dbp80 + chr3L 27390610 intron Dbp80 + chr3L 27390786 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-738 1589 chr3L 27980696 27980730 chr3L 27985494 27985527 Doc 6 4798 0.0 2.0 1.0 3.0 4831 chr3L 27980696 intron CG17514 - chr3L 27983112 intron CG17514 - chr3L 27985527 intron CG17514 - chr3L_6_27980001 chr3L_27980001 RAL-738 1590 chr3R 444056 444085 chr3R 444133 444167 4 72 10.0 8.0 9.0 0.4 111 chr3R 444056 intergenic not near genes chr3R 444112 intergenic not near genes chr3R 444167 intergenic not near genes chr3R_4_440001 chr3R_440001 RAL-738 1591 chr3R 1443431 1443451 chr3R 1443507 1443518 6 70 3.0 0.5 1.8 2.1 87 chr3R 1443431 intron CG40155 + chr3R 1443474 intron CG40155 + chr3R 1443518 intron CG40155 + chr3R_6_1440001 chr3R_1440001 RAL-738 1592 chr3R 1867169 1867174 chr3R 1954891 1954897 Doc3-element 4 87724 13.5 7.0 10.2 0.4 87728 chr3R 1867169 intron CG42623 + chr3R 1911033 intron CG42623 + chr3R 1954897 intergenic not near genes chr3R_4_1910001 chr3R_1910001 RAL-738 1593 chr3R 1939056 1939076 chr3R 1939150 1939170 6 94 2.5 2.5 2.5 1.7 114 chr3R 1939056 intergenic not near genes chr3R 1939113 intergenic not near genes chr3R 1939170 intergenic not near genes chr3R_6_1935001 chr3R_1935001 RAL-738 1594 chr3R 2534137 2534148 chr3R 2541706 2541710 4 7567 18.5 26.0 22.2 0.2 7573 chr3R 2534137 intergenic not near genes chr3R 2537924 intergenic not near genes chr3R 2541710 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-738 1595 chr3R 2534149 2534158 chr3R 2541702 2541727 6 7563 16.5 24.0 20.2 0.3 7578 chr3R 2534149 intergenic not near genes chr3R 2537938 intergenic not near genes chr3R 2541727 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-738 1596 chr3R 3267250 3267270 chr3R 3267432 3267451 4 186 11.5 17.0 14.2 0.3 201 chr3R 3267250 intergenic not near genes chr3R 3267350 intergenic not near genes chr3R 3267451 intergenic not near genes chr3R_4_3265001 chr3R_3265001 RAL-738 1597 chr3R 4063809 4063836 chr3R 4069089 4069106 4 5278 4.5 17.0 10.8 0.3 5297 chr3R 4063809 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-738 1598 chr3R 4206069 4206104 chr3R 4211644 4211678 mdg3 9 5573 4.0 4.5 4.2 1.7 5609 chr3R 4206069 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211678 intron CG14636 - chr3R_9_4205001 chr3R_4205001 RAL-738 1599 chr3R 4366755 4366788 chr3R 4375138 4375160 roo 11 8380 4.5 4.0 4.2 2.1 8405 chr3R 4366755 3` UTR CG1090 + chr3R 4370958 intergenic not near genes chr3R 4375160 5` UTR CR44922 + chr3R_11_4370001 chr3R_4370001 RAL-738 1600 chr3R 4408414 4408432 chr3R 4412718 4412736 Juan 9 4300 8.5 8.5 8.5 0.9 4322 chr3R 4408414 intron CG32944 - chr3R 4410575 intron CG32944 - chr3R 4412736 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-738 1601 chr3R 4408433 4408437 chr3R 4412715 4412741 Juan 4 4298 6.5 8.0 7.2 0.5 4308 chr3R 4408433 intron CG32944 - chr3R 4410587 intron CG32944 - chr3R 4412741 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-738 1602 chr3R 4501975 4502006 chr3R 4502053 4502083 5 78 11.0 10.0 10.5 0.4 108 chr3R 4501975 intron CG34357 - chr3R 4502029 intron CG34357 - chr3R 4502083 intron CG34357 - chr3R_5_4500001 chr3R_4500001 RAL-738 1603 chr3R 4604276 4604284 chr3R 4604434 4604442 4 158 12.5 7.0 9.8 0.4 166 chr3R 4604276 intergenic not near genes chr3R 4604359 intergenic not near genes chr3R 4604442 intergenic not near genes chr3R_4_4600001 chr3R_4600001 RAL-738 1604 chr3R 4609551 4609577 chr3R 4610714 4610741 1360 5 1164 20.0 14.0 17.0 0.3 1190 chr3R 4609551 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610741 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-738 1605 chr3R 4636598 4636626 chr3R 4637018 4637045 INE-1 6 420 10.0 11.5 10.8 0.5 447 chr3R 4636598 intergenic not near genes chr3R 4636822 intergenic not near genes chr3R 4637045 intergenic not near genes chr3R_6_4635001 chr3R_4635001 RAL-738 1606 chr3R 4753246 4753264 chr3R 4757548 4757567 F-element 4 4300 19.0 8.5 13.8 0.3 4321 chr3R 4753246 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757567 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-738 1607 chr3R 4759722 4759752 chr3R 4761219 4761248 hopper2 11 1496 9.5 23.5 16.5 0.6 1526 chr3R 4759722 intron,intron atms +,CG44098 - chr3R 4760485 intron,intron atms +,CG44098 - chr3R 4761248 intron,intron atms +,CG44098 - chr3R_11_4760001 chr3R_4760001 RAL-738 1608 chr3R 4764459 4764492 chr3R 4764692 4764725 12 231 12.0 6.5 9.2 1.2 266 chr3R 4764459 intron,intron atms +,CG44098 - chr3R 4764592 intron,intron atms +,CG44098 - chr3R 4764725 intron,intron atms +,CG44098 - chr3R_12_4760001 chr3R_4760001 RAL-738 1609 chr3R 4769160 4769190 chr3R 4769236 4769268 15 76 3.5 4.5 4.0 3.0 108 chr3R 4769160 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769268 intron,intron atms +,CG44098 - chr3R_15_4765001 chr3R_4765001 RAL-738 1610 chr3R 4887478 4887508 chr3R 4894855 4894868 rover 5 7370 4.0 6.0 5.0 0.8 7390 chr3R 4887478 intergenic not near genes chr3R 4891173 intergenic not near genes chr3R 4894868 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-738 1611 chr3R 4896290 4896319 chr3R 4896383 4896397 8 91 3.0 0.0 1.5 3.2 107 chr3R 4896290 intergenic CR45580 + chr3R 4896344 intergenic CR45580 + chr3R 4896397 intergenic CR45580 + chr3R_8_4895001 chr3R_4895001 RAL-738 1612 chr3R 5045843 5045875 chr3R 5052945 5052951 HMS-Beagle 9 7099 4.0 4.0 4.0 1.8 7108 chr3R 5045843 intron CR43635 - chr3R 5049397 intergenic not near genes chr3R 5052951 intergenic CR45588 - chr3R_9_5045001 chr3R_5045001 RAL-738 1613 chr3R 5058745 5058761 chr3R 5058914 5058930 4 169 7.5 7.5 7.5 0.5 185 chr3R 5058745 intergenic not near genes chr3R 5058838 intergenic not near genes chr3R 5058930 intergenic not near genes chr3R_4_5055001 chr3R_5055001 RAL-738 1614 chr3R 5067982 5068014 chr3R 5073499 5073531 mdg3 12 5517 7.5 6.0 6.8 1.5 5549 chr3R 5067982 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_12_5070001 chr3R_5070001 RAL-738 1615 chr3R 5131350 5131370 chr3R 5131429 5131449 4 78 12.0 12.0 12.0 0.3 99 chr3R 5131350 intergenic not near genes chr3R 5131400 intergenic not near genes chr3R 5131449 intergenic not near genes chr3R_4_5130001 chr3R_5130001 RAL-738 1616 chr3R 5236218 5236246 chr3R 5236346 5236347 10 121 12.0 13.0 12.5 0.7 129 chr3R 5236218 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236282 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236347 3` UTR rtp - chr3R_10_5235001 chr3R_5235001 RAL-738 1617 chr3R 5250880 5250916 chr3R 5250992 5251026 10 109 14.0 12.0 13.0 0.7 146 chr3R 5250880 intron CG12163 - chr3R 5250953 intron CG12163 - chr3R 5251026 intron CG12163 - chr3R_10_5250001 chr3R_5250001 RAL-738 1618 chr3R 5271157 5271187 chr3R 5271236 5271266 9 78 18.0 22.5 20.2 0.4 109 chr3R 5271157 intergenic not near genes chr3R 5271212 intergenic not near genes chr3R 5271266 intergenic not near genes chr3R_9_5270001 chr3R_5270001 RAL-738 1619 chr3R 5278087 5278123 chr3R 5278168 5278204 24 78 8.0 4.5 6.2 3.3 117 chr3R 5278087 intron mtd - chr3R 5278146 intron mtd - chr3R 5278204 intron mtd - chr3R_24_5275001 chr3R_5275001 RAL-738 1620 chr3R 5338400 5338427 chr3R 5343575 5343599 Rt1c 12 5173 5.5 11.0 8.2 1.3 5199 chr3R 5338400 intron mtd - chr3R 5341000 intron mtd - chr3R 5343599 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-738 1621 chr3R 5385151 5385175 chr3R 5385331 5385348 8 176 14.5 14.0 14.2 0.5 197 chr3R 5385151 exon kkv - chr3R 5385250 intron kkv - chr3R 5385348 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-738 1622 chr3R 5436927 5436952 chr3R 5437007 5437037 9 84 11.0 13.5 12.2 0.7 110 chr3R 5436927 intron CG14669 + chr3R 5436982 intron CG14669 + chr3R 5437037 intron CG14669 + chr3R_9_5435001 chr3R_5435001 RAL-738 1623 chr3R 5445959 5445991 chr3R 5452419 5452451 Burdock 8 6458 3.5 3.5 3.5 1.8 6492 chr3R 5445959 intron CG14669 + chr3R 5449205 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-738 1624 chr3R 5502612 5502619 chr3R 5502664 5502698 5 61 8.5 5.5 7.0 0.6 86 chr3R 5502612 5` UTR CG31547 - chr3R 5502655 5` UTR CG31547 - chr3R 5502698 5` UTR CG31547 - chr3R_5_5500001 chr3R_5500001 RAL-738 1625 chr3R 5660248 5660254 chr3R 5660820 5660849 4 578 19.5 35.5 27.5 0.1 601 chr3R 5660248 5` UTR CR44093 + chr3R 5660548 5` UTR CR44093 + chr3R 5660849 intron CG1109 + chr3R_4_5660001 chr3R_5660001 RAL-738 1626 chr3R 5684026 5684051 chr3R 5684105 5684130 4 76 12.5 9.5 11.0 0.3 104 chr3R 5684026 intron Rab23 - chr3R 5684078 intron Rab23 - chr3R 5684130 intron Rab23 - chr3R_4_5680001 chr3R_5680001 RAL-738 1627 chr3R 5712084 5712112 chr3R 5712172 5712200 12 86 3.0 8.5 5.8 1.8 116 chr3R 5712084 3` UTR plx + chr3R 5712142 3` UTR plx + chr3R 5712200 3` UTR plx + chr3R_12_5710001 chr3R_5710001 RAL-738 1628 chr3R 5720037 5720060 chr3R 5720113 5720129 6 72 17.5 12.0 14.8 0.4 92 chr3R 5720037 intergenic not near genes chr3R 5720083 intergenic not near genes chr3R 5720129 intergenic not near genes chr3R_6_5720001 chr3R_5720001 RAL-738 1629 chr3R 5726090 5726123 chr3R 5726252 5726285 7 162 10.0 12.5 11.2 0.6 195 chr3R 5726090 intergenic not near genes chr3R 5726188 intergenic not near genes chr3R 5726285 intergenic not near genes chr3R_7_5725001 chr3R_5725001 RAL-738 1630 chr3R 5746017 5746021 chr3R 5746258 5746262 pogo 4 241 4.5 8.0 6.2 0.6 245 chr3R 5746017 3` UTR Madm + chr3R 5746140 3` UTR Madm + chr3R 5746262 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-738 1631 chr3R 5746022 5746042 chr3R 5746254 5746283 pogo 8 234 4.0 6.0 5.0 1.3 261 chr3R 5746022 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-738 1632 chr3R 5747010 5747043 chr3R 5753201 5753234 diver 12 6190 2.5 3.5 3.0 3.0 6224 chr3R 5747010 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753234 intergenic CG2091 - chr3R_12_5750001 chr3R_5750001 RAL-738 1633 chr3R 5765632 5765656 chr3R 5765711 5765740 13 82 26.5 25.0 25.8 0.5 108 chr3R 5765632 intron CG2082 - chr3R 5765686 intron CG2082 - chr3R 5765740 intron CG2082 - chr3R_13_5765001 chr3R_5765001 RAL-738 1634 chr3R 5769234 5769265 chr3R 5769329 5769363 14 94 4.5 2.5 3.5 3.1 129 chr3R 5769234 intron CG2082 - chr3R 5769298 intron CG2082 - chr3R 5769363 intron CG2082 - chr3R_14_5765001 chr3R_5765001 RAL-738 1635 chr3R 5772381 5772392 chr3R 5772539 5772550 7 157 6.0 5.5 5.8 1.0 169 chr3R 5772381 intron CG2082 - chr3R 5772466 intron CG2082 - chr3R 5772550 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-738 1636 chr3R 5772394 5772409 chr3R 5772536 5772567 13 155 3.0 5.5 4.2 2.5 173 chr3R 5772394 intron CG2082 - chr3R 5772480 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_13_5770001 chr3R_5770001 RAL-738 1637 chr3R 5809129 5809143 chr3R 5809355 5809383 pogo 7 238 7.5 8.5 8.0 0.8 254 chr3R 5809129 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-738 1638 chr3R 5822387 5822393 chr3R 5823554 5823560 1360 5 1167 12.5 10.0 11.2 0.4 1173 chr3R 5822387 3` UTR CG2023 - chr3R 5822974 3` UTR CG2023 - chr3R 5823560 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-738 1639 chr3R 5822394 5822396 chr3R 5823549 5823563 1360 4 1164 11.5 6.5 9.0 0.4 1169 chr3R 5822394 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823563 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-738 1640 chr3R 5822400 5822413 chr3R 5823544 5823552 1360 9 1159 6.5 6.0 6.2 1.2 1152 chr3R 5822400 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823552 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-738 1641 chr3R 5840837 5840849 chr3R 5840910 5840912 7 78 22.5 20.5 21.5 0.3 75 chr3R 5840837 intergenic CG1213 + chr3R 5840874 intergenic CG1213 + chr3R 5840912 intergenic CG1213 + chr3R_7_5840001 chr3R_5840001 RAL-738 1642 chr3R 5927572 5927585 chr3R 5927806 5927825 pogo 5 237 8.5 3.5 6.0 0.7 253 chr3R 5927572 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927825 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-738 1643 chr3R 5954340 5954359 chr3R 5954399 5954435 7 70 10.5 10.0 10.2 0.6 95 chr3R 5954340 intron CG34113 - chr3R 5954388 intron CG34113 - chr3R 5954435 intron CG34113 - chr3R_7_5950001 chr3R_5950001 RAL-738 1644 chr3R 5968183 5968200 chr3R 5968263 5968280 7 79 20.0 20.5 20.2 0.3 97 chr3R 5968183 intergenic not near genes chr3R 5968232 intergenic not near genes chr3R 5968280 intergenic not near genes chr3R_7_5965001 chr3R_5965001 RAL-738 1645 chr3R 5988947 5988969 chr3R 5989029 5989051 4 79 15.0 10.0 12.5 0.3 104 chr3R 5988947 intergenic CR44927 + chr3R 5988999 intergenic CR44927 + chr3R 5989051 intergenic CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-738 1646 chr3R 5989337 5989365 chr3R 5989416 5989416 6 72 8.0 9.5 8.8 0.6 79 chr3R 5989337 5` UTR CR44927 + chr3R 5989376 5` UTR CR44927 + chr3R 5989416 5` UTR CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-738 1647 chr3R 6009500 6009529 chr3R 6009623 6009652 10 121 13.0 13.0 13.0 0.7 152 chr3R 6009500 intergenic not near genes chr3R 6009576 intergenic not near genes chr3R 6009652 intergenic not near genes chr3R_10_6005001 chr3R_6005001 RAL-738 1648 chr3R 6009903 6010164 chr3R 6009974 6010261 7 89 12.5 4.5 8.5 0.7 358 chr3R 6009903 intergenic not near genes chr3R 6010082 intergenic CG10280 - chr3R 6010261 intergenic CG10280 - chr3R_7_6010001 chr3R_6010001 RAL-738 1649 chr3R 6015962 6015990 chr3R 6024442 6024444 Tirant 9 8475 5.0 6.0 5.5 1.4 8482 chr3R 6015962 intergenic not near genes chr3R 6020203 intergenic not near genes chr3R 6024444 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-738 1650 chr3R 6033341 6033350 chr3R 6033414 6033432 4 79 15.0 13.0 14.0 0.3 91 chr3R 6033341 intergenic not near genes chr3R 6033386 intergenic not near genes chr3R 6033432 intergenic not near genes chr3R_4_6030001 chr3R_6030001 RAL-738 1651 chr3R 6035144 6035180 chr3R 6035224 6035260 8 77 25.5 20.5 23.0 0.3 116 chr3R 6035144 intergenic not near genes chr3R 6035202 intergenic not near genes chr3R 6035260 intergenic not near genes chr3R_8_6035001 chr3R_6035001 RAL-738 1652 chr3R 6087687 6087714 chr3R 6087952 6087973 11 266 9.0 13.0 11.0 0.9 286 chr3R 6087687 intergenic not near genes chr3R 6087830 intergenic not near genes chr3R 6087973 intergenic not near genes chr3R_11_6085001 chr3R_6085001 RAL-738 1653 chr3R 6141920 6141951 chr3R 6141991 6142022 4 70 14.0 13.0 13.5 0.3 102 chr3R 6141920 intergenic not near genes chr3R 6141971 intergenic not near genes chr3R 6142022 intergenic not near genes chr3R_4_6140001 chr3R_6140001 RAL-738 1654 chr3R 6158513 6158542 chr3R 6167096 6167097 Tirant 7 8573 3.5 5.5 4.5 1.3 8584 chr3R 6158513 intergenic not near genes chr3R 6162805 intergenic not near genes chr3R 6167097 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-738 1655 chr3R 6175179 6175202 chr3R 6182450 6182464 HMS-Beagle2 13 7270 3.0 3.0 3.0 3.2 7285 chr3R 6175179 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182464 intergenic CR45194 + chr3R_13_6175001 chr3R_6175001 RAL-738 1656 chr3R 6191173 6191201 chr3R 6191247 6191281 15 79 1.5 2.5 2.0 5.0 108 chr3R 6191173 intron NPFR + chr3R 6191227 intron NPFR + chr3R 6191281 intron NPFR + chr3R_15_6190001 chr3R_6190001 RAL-738 1657 chr3R 6192628 6192664 chr3R 6192713 6192749 8 85 18.5 18.0 18.2 0.4 121 chr3R 6192628 exon NPFR + chr3R 6192688 intron NPFR + chr3R 6192749 intron NPFR + chr3R_8_6190001 chr3R_6190001 RAL-738 1658 chr3R 6203981 6204002 chr3R 6204113 6204132 4 132 12.5 12.0 12.2 0.3 151 chr3R 6203981 intron Osi24 + chr3R 6204056 intron Osi24 + chr3R 6204132 intron Osi24 + chr3R_4_6200001 chr3R_6200001 RAL-738 1659 chr3R 6206293 6206319 chr3R 6206497 6206536 BS 11 208 4.5 5.5 5.0 1.8 243 chr3R 6206293 exon Osi24 + chr3R 6206414 intron Osi24 + chr3R 6206536 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-738 1660 chr3R 6334800 6334814 chr3R 6334898 6334906 5 97 3.0 5.0 4.0 1.0 106 chr3R 6334800 intergenic not near genes chr3R 6334853 intergenic not near genes chr3R 6334906 intergenic Osi19 + chr3R_5_6330001 chr3R_6330001 RAL-738 1661 chr3R 6343718 6343739 chr3R 6343809 6343825 5 97 5.0 6.0 5.5 0.8 107 chr3R 6343718 3` UTR CG10298 + chr3R 6343772 3` UTR CG10298 + chr3R 6343825 intergenic CG10298 +,CG17919 + chr3R_5_6340001 chr3R_6340001 RAL-738 1662 chr3R 6428812 6428843 chr3R 6428914 6428924 10 98 13.0 16.0 14.5 0.6 112 chr3R 6428812 intron gpp + chr3R 6428868 intron gpp + chr3R 6428924 intron gpp + chr3R_10_6425001 chr3R_6425001 RAL-738 1663 chr3R 6510024 6510054 chr3R 6515105 6515135 jockey 9 5081 9.0 3.0 6.0 1.3 5111 chr3R 6510024 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_9_6510001 chr3R_6510001 RAL-738 1664 chr3R 6551116 6551143 chr3R 6551210 6551237 11 90 23.0 25.5 24.2 0.4 121 chr3R 6551116 intron dpr11 - chr3R 6551176 intron dpr11 - chr3R 6551237 intron dpr11 - chr3R_11_6550001 chr3R_6550001 RAL-738 1665 chr3R 6578883 6578916 chr3R 6579002 6579036 5 116 19.0 14.5 16.8 0.3 153 chr3R 6578883 intron dpr11 - chr3R 6578960 intron dpr11 - chr3R 6579036 intron dpr11 - chr3R_5_6575001 chr3R_6575001 RAL-738 1666 chr3R 6698003 6698037 chr3R 6698082 6698111 9 76 10.5 9.5 10.0 0.8 108 chr3R 6698003 intergenic not near genes chr3R 6698057 intergenic not near genes chr3R 6698111 intergenic not near genes chr3R_9_6695001 chr3R_6695001 RAL-738 1667 chr3R 6737499 6737503 chr3R 6739286 6739288 Doc 4 1786 5.0 3.0 4.0 0.8 1789 chr3R 6737499 intron pb - chr3R 6738394 intron pb - chr3R 6739288 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-738 1668 chr3R 6737504 6737531 chr3R 6739284 6739316 Doc 6 1778 1.5 3.0 2.2 1.9 1812 chr3R 6737504 intron pb - chr3R 6738410 intron pb - chr3R 6739316 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-738 1669 chr3R 6804213 6804224 chr3R 6804305 6804330 5 103 9.5 8.0 8.8 0.5 117 chr3R 6804213 intergenic not near genes chr3R 6804272 intergenic not near genes chr3R 6804330 intergenic not near genes chr3R_5_6800001 chr3R_6800001 RAL-738 1670 chr3R 6856384 6856398 chr3R 6856501 6856515 5 117 2.0 2.5 2.2 1.6 131 chr3R 6856384 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856515 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-738 1671 chr3R 6862221 6862253 chr3R 6862308 6862340 11 87 5.5 8.0 6.8 1.4 119 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862340 intergenic not near genes chr3R_11_6860001 chr3R_6860001 RAL-738 1672 chr3R 6862683 6862695 chr3R 6862763 6862775 5 80 14.0 13.0 13.5 0.3 92 chr3R 6862683 intergenic not near genes chr3R 6862729 intergenic not near genes chr3R 6862775 intergenic not near genes chr3R_5_6860001 chr3R_6860001 RAL-738 1673 chr3R 6923587 6923617 chr3R 6923674 6923701 6 86 10.5 14.0 12.2 0.5 114 chr3R 6923587 intron Antp - chr3R 6923644 intron Antp - chr3R 6923701 intron Antp - chr3R_6_6920001 chr3R_6920001 RAL-738 1674 chr3R 7001254 7001272 chr3R 7001331 7001354 5 80 7.5 11.0 9.2 0.5 100 chr3R 7001254 intergenic not near genes chr3R 7001304 intergenic not near genes chr3R 7001354 intergenic not near genes chr3R_5_7000001 chr3R_7000001 RAL-738 1675 chr3R 7012223 7012228 chr3R 7012294 7012304 5 75 12.5 18.5 15.5 0.3 81 chr3R 7012223 intergenic not near genes chr3R 7012264 intergenic not near genes chr3R 7012304 intergenic not near genes chr3R_5_7010001 chr3R_7010001 RAL-738 1676 chr3R 7021682 7021693 chr3R 7021789 7021800 4 107 12.5 4.5 8.5 0.4 118 chr3R 7021682 intergenic not near genes chr3R 7021741 intergenic not near genes chr3R 7021800 intergenic not near genes chr3R_4_7020001 chr3R_7020001 RAL-738 1677 chr3R 7030708 7030728 chr3R 7030784 7030804 6 76 15.5 12.5 14.0 0.4 96 chr3R 7030708 intergenic not near genes chr3R 7030756 intergenic not near genes chr3R 7030804 intergenic not near genes chr3R_6_7030001 chr3R_7030001 RAL-738 1678 chr3R 7060255 7060284 chr3R 7060336 7060365 6 79 3.5 2.0 2.8 1.6 110 chr3R 7060255 3` UTR dj + chr3R 7060310 3` UTR dj + chr3R 7060365 3` UTR dj + chr3R_6_7060001 chr3R_7060001 RAL-738 1679 chr3R 7092799 7092813 chr3R 7093347 7093377 4 559 12.5 23.0 17.8 0.2 578 chr3R 7092799 3` UTR CR43685 - chr3R 7093088 intron CR43685 - chr3R 7093377 3` UTR CR43685 - chr3R_4_7090001 chr3R_7090001 RAL-738 1680 chr3R 7103286 7103320 chr3R 7103360 7103385 13 74 5.5 6.5 6.0 1.9 99 chr3R 7103286 intron Alh - chr3R 7103336 intron Alh - chr3R 7103385 intron Alh - chr3R_13_7100001 chr3R_7100001 RAL-738 1681 chr3R 7126504 7126534 chr3R 7126599 7126629 6 95 2.0 2.5 2.2 1.9 125 chr3R 7126504 3` UTR CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126629 3` UTR CG10068 - chr3R_6_7125001 chr3R_7125001 RAL-738 1682 chr3R 7173689 7173709 chr3R 7173762 7173789 6 79 2.5 2.5 2.5 1.7 100 chr3R 7173689 intron sas + chr3R 7173739 intron sas + chr3R 7173789 intron sas + chr3R_6_7170001 chr3R_7170001 RAL-738 1683 chr3R 7217462 7217484 chr3R 7217683 7217705 4 221 9.0 10.0 9.5 0.4 243 chr3R 7217462 intergenic CG14605 -,CG14606 - chr3R 7217584 intergenic CG14605 - chr3R 7217705 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-738 1684 chr3R 7447995 7448005 chr3R 7448073 7448083 7 78 5.5 7.5 6.5 0.9 88 chr3R 7447995 intergenic not near genes chr3R 7448039 intergenic not near genes chr3R 7448083 intergenic not near genes chr3R_7_7445001 chr3R_7445001 RAL-738 1685 chr3R 7464693 7464719 chr3R 7464779 7464805 11 84 13.0 17.5 15.2 0.7 112 chr3R 7464693 intergenic not near genes chr3R 7464749 intergenic not near genes chr3R 7464805 intergenic not near genes chr3R_11_7460001 chr3R_7460001 RAL-738 1686 chr3R 7492604 7492631 chr3R 7492676 7492687 6 73 9.5 4.5 7.0 0.8 83 chr3R 7492604 intron alpha-Est10 - chr3R 7492646 intron alpha-Est10 - chr3R 7492687 intron alpha-Est10 - chr3R_6_7490001 chr3R_7490001 RAL-738 1687 chr3R 7499745 7499768 chr3R 7499820 7499846 10 75 12.5 16.5 14.5 0.6 101 chr3R 7499745 intron alpha-Est9 - chr3R 7499796 intron alpha-Est9 - chr3R 7499846 intron alpha-Est9 - chr3R_10_7495001 chr3R_7495001 RAL-738 1688 chr3R 7511764 7511799 chr3R 7511845 7511880 7 81 10.0 11.5 10.8 0.6 116 chr3R 7511764 intron alpha-Est8 - chr3R 7511822 intron alpha-Est8 - chr3R 7511880 intron alpha-Est8 - chr3R_7_7510001 chr3R_7510001 RAL-738 1689 chr3R 7548626 7548635 chr3R 7548687 7548714 4 70 12.5 13.5 13.0 0.3 88 chr3R 7548626 intron alpha-Est1 - chr3R 7548670 intron alpha-Est1 - chr3R 7548714 intron alpha-Est1 - chr3R_4_7545001 chr3R_7545001 RAL-738 1690 chr3R 7556949 7556964 chr3R 7557027 7557057 9 82 19.0 21.0 20.0 0.4 108 chr3R 7556949 intergenic not near genes chr3R 7557003 intergenic not near genes chr3R 7557057 intergenic not near genes chr3R_9_7555001 chr3R_7555001 RAL-738 1691 chr3R 7635661 7635676 chr3R 7635744 7635759 4 83 10.0 9.0 9.5 0.4 98 chr3R 7635661 intron CG34127 - chr3R 7635710 intron CG34127 - chr3R 7635759 intron CG34127 - chr3R_4_7635001 chr3R_7635001 RAL-738 1692 chr3R 7694586 7694605 chr3R 7713637 7713666 invader3 4 19058 5.0 1.5 3.2 1.0 19080 chr3R 7694586 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713666 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-738 1693 chr3R 7729464 7729498 chr3R 7737402 7737433 Stalker2 9 7933 3.0 7.5 5.2 1.5 7969 chr3R 7729464 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_9_7730001 chr3R_7730001 RAL-738 1694 chr3R 7821729 7821745 chr3R 7821825 7821841 4 96 18.5 15.0 16.8 0.2 112 chr3R 7821729 intron CG34384 + chr3R 7821785 intron CG34384 + chr3R 7821841 intron CG34384 + chr3R_4_7820001 chr3R_7820001 RAL-738 1695 chr3R 7849644 7849663 chr3R 7850811 7850820 1360 10 1165 3.5 8.5 6.0 1.4 1176 chr3R 7849644 intron CG34384 + chr3R 7850232 intron CG34384 + chr3R 7850820 intron CG34384 + chr3R_10_7850001 chr3R_7850001 RAL-738 1696 chr3R 7849665 7849673 chr3R 7850810 7850840 1360 5 1161 3.5 8.0 5.8 0.7 1175 chr3R 7849665 intron CG34384 + chr3R 7850252 intron CG34384 + chr3R 7850840 intron CG34384 + chr3R_5_7850001 chr3R_7850001 RAL-738 1697 chr3R 7973317 7973346 chr3R 7974379 7974407 1360 5 1062 3.5 6.0 4.8 0.9 1090 chr3R 7973317 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974407 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-738 1698 chr3R 8090280 8090304 chr3R 8090457 8090481 6 177 5.0 12.5 8.8 0.6 201 chr3R 8090280 5` UTR CR44330 + chr3R 8090380 intergenic CR44330 + chr3R 8090481 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-738 1699 chr3R 8094411 8094423 chr3R 8099716 8099728 Transpac 4 5304 8.0 3.0 5.5 0.6 5317 chr3R 8094411 intron CG7900 + chr3R 8097070 intron CG7900 + chr3R 8099728 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-738 1700 chr3R 8101765 8101785 chr3R 8104848 8104868 G2 8 3083 5.0 6.5 5.8 1.2 3103 chr3R 8101765 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104868 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-738 1701 chr3R 8207564 8207586 chr3R 8208401 8208430 F-element 9 840 8.0 5.0 6.5 1.2 866 chr3R 8207564 intergenic not near genes chr3R 8207997 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_9_8205001 chr3R_8205001 RAL-738 1702 chr3R 8213020 8213037 chr3R 8213100 8213114 4 76 12.0 11.5 11.8 0.3 94 chr3R 8213020 intergenic not near genes chr3R 8213067 intergenic not near genes chr3R 8213114 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-738 1703 chr3R 8239649 8239673 chr3R 8239731 8239755 6 78 11.0 12.0 11.5 0.5 106 chr3R 8239649 intron Ada2b - chr3R 8239702 intron Ada2b - chr3R 8239755 intron Ada2b - chr3R_6_8235001 chr3R_8235001 RAL-738 1704 chr3R 8247913 8247926 chr3R 8247988 8248008 4 80 9.0 10.5 9.8 0.4 95 chr3R 8247913 intron,intron CG18749 +,CG33722 + chr3R 8247960 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8248008 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_4_8245001 chr3R_8245001 RAL-738 1705 chr3R 8253810 8253832 chr3R 8254063 8254065 6 249 13.0 15.0 14.0 0.4 255 chr3R 8253810 intron mtg + chr3R 8253938 intron mtg + chr3R 8254065 intron mtg + chr3R_6_8250001 chr3R_8250001 RAL-738 1706 chr3R 8283888 8283917 chr3R 8283973 8283975 7 81 20.5 13.0 16.8 0.4 87 chr3R 8283888 intergenic not near genes chr3R 8283932 intergenic not near genes chr3R 8283975 intergenic not near genes chr3R_7_8280001 chr3R_8280001 RAL-738 1707 chr3R 8339246 8339247 chr3R 21907534 21907536 15 13568288 30.0 36.5 33.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-738 1708 chr3R 8393593 8393605 chr3R 8393662 8393688 4 76 6.0 8.5 7.2 0.5 95 chr3R 8393593 intron CG45263 - chr3R 8393640 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-738 1709 chr3R 8403013 8403040 chr3R 8412171 8412206 roo 13 9163 7.5 6.0 6.8 1.7 9193 chr3R 8403013 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_13_8405001 chr3R_8405001 RAL-738 1710 chr3R 8478089 8478110 chr3R 8478160 8478180 5 76 9.5 11.5 10.5 0.4 91 chr3R 8478089 intergenic CG45263 - chr3R 8478134 intergenic not near genes chr3R 8478180 intergenic not near genes chr3R_5_8475001 chr3R_8475001 RAL-738 1711 chr3R 8537831 8537855 chr3R 8537910 8537937 8 81 16.0 16.0 16.0 0.5 106 chr3R 8537831 intergenic not near genes chr3R 8537884 intergenic not near genes chr3R 8537937 intergenic not near genes chr3R_8_8535001 chr3R_8535001 RAL-738 1712 chr3R 8538351 8538358 chr3R 8538434 8538440 4 83 16.0 13.0 14.5 0.3 89 chr3R 8538351 intergenic not near genes chr3R 8538396 intergenic not near genes chr3R 8538440 intergenic not near genes chr3R_4_8535001 chr3R_8535001 RAL-738 1713 chr3R 8570480 8570511 chr3R 8575116 8575123 HMS-Beagle 18 4629 4.0 7.0 5.5 2.8 4643 chr3R 8570480 intergenic not near genes chr3R 8572802 intergenic not near genes chr3R 8575123 intergenic not near genes chr3R_18_8570001 chr3R_8570001 RAL-738 1714 chr3R 8596285 8596309 chr3R 8596397 8596421 8 110 8.5 10.5 9.5 0.8 136 chr3R 8596285 intron 5-HT2B + chr3R 8596353 intron 5-HT2B + chr3R 8596421 intron 5-HT2B + chr3R_8_8595001 chr3R_8595001 RAL-738 1715 chr3R 8601774 8601783 chr3R 8610927 8610931 roo 4 9152 11.0 4.5 7.8 0.5 9157 chr3R 8601774 intron 5-HT2B + chr3R 8606352 intron 5-HT2B + chr3R 8610931 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-738 1716 chr3R 8601784 8601799 chr3R 8610921 8610952 roo 8 9147 3.5 3.0 3.2 1.9 9168 chr3R 8601784 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-738 1717 chr3R 8614795 8614816 chr3R 8614998 8615019 7 200 8.5 15.0 11.8 0.5 224 chr3R 8614795 intron 5-HT2B + chr3R 8614907 intron 5-HT2B + chr3R 8615019 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-738 1718 chr3R 8636938 8636949 chr3R 8637240 8637252 6 303 23.0 18.0 20.5 0.3 314 chr3R 8636938 intergenic not near genes chr3R 8637095 intergenic not near genes chr3R 8637252 intergenic not near genes chr3R_6_8635001 chr3R_8635001 RAL-738 1719 chr3R 8636951 8636965 chr3R 8637238 8637268 4 294 16.5 17.5 17.0 0.2 317 chr3R 8636951 intergenic not near genes chr3R 8637110 intergenic not near genes chr3R 8637268 intergenic not near genes chr3R_4_8635001 chr3R_8635001 RAL-738 1720 chr3R 8685298 8685312 chr3R 8685397 8685412 7 100 4.0 5.5 4.8 1.2 114 chr3R 8685298 intron CR44937 - chr3R 8685355 intron CR44937 - chr3R 8685412 intron CR44937 - chr3R_7_8685001 chr3R_8685001 RAL-738 1721 chr3R 8707360 8707391 chr3R 8709801 8709813 jockey 12 2439 6.5 7.5 7.0 1.5 2453 chr3R 8707360 intergenic not near genes chr3R 8708586 intergenic not near genes chr3R 8709813 intergenic not near genes chr3R_12_8705001 chr3R_8705001 RAL-738 1722 chr3R 8867724 8867751 chr3R 8867825 8867839 4 96 6.0 6.5 6.2 0.6 115 chr3R 8867724 intron pyd - chr3R 8867782 intron pyd - chr3R 8867839 intron pyd - chr3R_4_8865001 chr3R_8865001 RAL-738 1723 chr3R 8917268 8917280 chr3R 8917391 8917415 4 132 17.5 14.5 16.0 0.2 147 chr3R 8917268 intron pyd - chr3R 8917342 intron pyd - chr3R 8917415 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-738 1724 chr3R 8917891 8917909 chr3R 8917971 8917989 6 80 8.5 14.0 11.2 0.5 98 chr3R 8917891 intron pyd - chr3R 8917940 intron pyd - chr3R 8917989 intron pyd - chr3R_6_8915001 chr3R_8915001 RAL-738 1725 chr3R 8918235 8918239 chr3R 8918297 8918301 4 72 12.0 11.0 11.5 0.3 66 chr3R 8918235 intron pyd - chr3R 8918268 intron pyd - chr3R 8918301 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-738 1726 chr3R 9028225 9028258 chr3R 9028347 9028361 8 116 6.5 15.0 10.8 0.7 136 chr3R 9028225 intron neur - chr3R 9028293 intron neur - chr3R 9028361 intron neur - chr3R_8_9025001 chr3R_9025001 RAL-738 1727 chr3R 9108871 9108881 chr3R 9108947 9108957 4 75 6.0 6.0 6.0 0.6 86 chr3R 9108871 intron pum - chr3R 9108914 intron pum - chr3R 9108957 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-738 1728 chr3R 9171930 9171952 chr3R 9172287 9172302 9 360 1.5 7.5 4.5 1.6 372 chr3R 9171930 intron pum - chr3R 9172116 intron pum - chr3R 9172302 intron pum - chr3R_9_9170001 chr3R_9170001 RAL-738 1729 chr3R 9319581 9319594 chr3R 9320016 9320029 jockey 8 434 9.0 10.0 9.5 0.8 448 chr3R 9319581 intron CG8861 - chr3R 9319805 intron CG8861 - chr3R 9320029 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-738 1730 chr3R 9319595 9319609 chr3R 9320014 9320044 jockey 9 431 5.0 9.5 7.2 1.1 449 chr3R 9319595 intron CG8861 - chr3R 9319820 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_9_9315001 chr3R_9315001 RAL-738 1731 chr3R 9361825 9361847 chr3R 9362066 9362086 pogo 7 241 1.5 6.0 3.8 1.5 261 chr3R 9361825 3` UTR CG45050 + chr3R 9361956 3` UTR CG45050 + chr3R 9362086 3` UTR CG45050 + chr3R_7_9360001 chr3R_9360001 RAL-738 1732 chr3R 9382826 9382844 chr3R 9382951 9382968 8 124 12.5 12.0 12.2 0.6 142 chr3R 9382826 intron FER - chr3R 9382897 intron FER - chr3R 9382968 intron FER - chr3R_8_9380001 chr3R_9380001 RAL-738 1733 chr3R 9390536 9390558 chr3R 9390620 9390626 7 80 7.5 7.0 7.2 0.9 90 chr3R 9390536 intron FER - chr3R 9390581 intron FER - chr3R 9390626 intron FER - chr3R_7_9390001 chr3R_9390001 RAL-738 1734 chr3R 9442288 9442316 chr3R 9442639 9442650 8 349 12.5 8.0 10.2 0.7 362 chr3R 9442288 intron ps + chr3R 9442469 intron ps + chr3R 9442650 intron ps + chr3R_8_9440001 chr3R_9440001 RAL-738 1735 chr3R 9601461 9601491 chr3R 9601579 9601609 6 116 10.5 11.0 10.8 0.5 148 chr3R 9601461 intron CG8312 + chr3R 9601535 intron CG8312 + chr3R 9601609 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-738 1736 chr3R 9611888 9611905 chr3R 9611970 9611987 6 82 6.0 0.0 3.0 1.5 99 chr3R 9611888 intron CG8312 + chr3R 9611938 intron CG8312 + chr3R 9611987 intron CG8312 + chr3R_6_9610001 chr3R_9610001 RAL-738 1737 chr3R 9644584 9644611 chr3R 9644665 9644688 8 80 12.5 11.5 12.0 0.6 104 chr3R 9644584 intron Dh44 + chr3R 9644636 intron Dh44 + chr3R 9644688 intron Dh44 + chr3R_8_9640001 chr3R_9640001 RAL-738 1738 chr3R 9699976 9700002 chr3R 9700065 9700074 1360 7 87 13.0 10.0 11.5 0.6 98 chr3R 9699976 intron Unc-115a - chr3R 9700025 intron Unc-115a - chr3R 9700074 intron Unc-115a - chr3R_7_9700001 chr3R_9700001 RAL-738 1739 chr3R 9836869 9836901 chr3R 9836957 9836959 4 80 17.0 13.5 15.2 0.2 90 chr3R 9836869 intron Teh1 - chr3R 9836914 intron Teh1 - chr3R 9836959 intron Teh1 - chr3R_4_9835001 chr3R_9835001 RAL-738 1740 chr3R 9898787 9898816 chr3R 9898879 9898905 8 91 4.5 1.0 2.8 2.1 118 chr3R 9898787 intron Glut4EF + chr3R 9898846 intron Glut4EF + chr3R 9898905 intron Glut4EF + chr3R_8_9895001 chr3R_9895001 RAL-738 1741 chr3R 10078527 10078545 chr3R 10078654 10078672 6 126 13.5 19.5 16.5 0.3 145 chr3R 10078527 intergenic not near genes chr3R 10078600 intergenic not near genes chr3R 10078672 intergenic not near genes chr3R_6_10075001 chr3R_10075001 RAL-738 1742 chr3R 10085953 10085980 chr3R 10086251 10086278 9 293 25.5 17.5 21.5 0.4 325 chr3R 10085953 intron CR45054 + chr3R 10086116 intron CR45054 + chr3R 10086278 intron CR45054 + chr3R_9_10085001 chr3R_10085001 RAL-738 1743 chr3R 10140429 10140464 chr3R 10140519 10140543 8 89 12.5 15.5 14.0 0.5 114 chr3R 10140429 3` UTR TAF1B - chr3R 10140486 3` UTR TAF1B - chr3R 10140543 3` UTR TAF1B - chr3R_8_10140001 chr3R_10140001 RAL-738 1744 chr3R 10187057 10187078 chr3R 10187134 10187155 5 76 10.5 11.5 11.0 0.4 98 chr3R 10187057 intron CG12814 - chr3R 10187106 intron CG12814 - chr3R 10187155 intron CG12814 - chr3R_5_10185001 chr3R_10185001 RAL-738 1745 chr3R 10231784 10231815 chr3R 10237361 10237391 mdg3 14 5574 3.0 4.0 3.5 3.1 5607 chr3R 10231784 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237391 intron CG42795 + chr3R_14_10230001 chr3R_10230001 RAL-738 1746 chr3R 10275556 10275586 chr3R 10275633 10275663 8 77 3.5 3.5 3.5 1.8 107 chr3R 10275556 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_8_10275001 chr3R_10275001 RAL-738 1747 chr3R 10403030 10403062 chr3R 10403111 10403143 5 81 3.5 4.0 3.8 1.0 113 chr3R 10403030 3` UTR CG6325 - chr3R 10403086 3` UTR CG6325 - chr3R 10403143 3` UTR CG6325 - chr3R_5_10400001 chr3R_10400001 RAL-738 1748 chr3R 10427424 10427431 chr3R 10427533 10427535 4 108 12.0 10.5 11.2 0.3 111 chr3R 10427424 intergenic not near genes chr3R 10427480 intergenic not near genes chr3R 10427535 intergenic not near genes chr3R_4_10425001 chr3R_10425001 RAL-738 1749 chr3R 10526625 10526656 chr3R 10526714 10526745 5 79 12.0 18.0 15.0 0.3 120 chr3R 10526625 intron hth - chr3R 10526685 intron hth - chr3R 10526745 intron hth - chr3R_5_10525001 chr3R_10525001 RAL-738 1750 chr3R 10531865 10531899 chr3R 10531946 10531961 12 75 6.0 5.5 5.8 1.8 96 chr3R 10531865 intron hth - chr3R 10531913 intron hth - chr3R 10531961 intron hth - chr3R_12_10530001 chr3R_10530001 RAL-738 1751 chr3R 10535334 10535342 chr3R 10535427 10535435 4 93 4.0 0.0 2.0 1.3 101 chr3R 10535334 intron hth - chr3R 10535384 intron hth - chr3R 10535435 intron hth - chr3R_4_10535001 chr3R_10535001 RAL-738 1752 chr3R 10641598 10641621 chr3R 10641677 10641701 5 80 9.5 13.0 11.2 0.4 103 chr3R 10641598 5` UTR CR44018 + chr3R 10641650 5` UTR CR44018 + chr3R 10641701 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-738 1753 chr3R 10651808 10651830 chr3R 10651907 10651929 6 99 10.5 12.0 11.2 0.5 121 chr3R 10651808 intergenic not near genes chr3R 10651868 intergenic not near genes chr3R 10651929 intergenic not near genes chr3R_6_10650001 chr3R_10650001 RAL-738 1754 chr3R 10723787 10723791 chr3R 10723859 10723883 4 83 16.5 13.5 15.0 0.2 96 chr3R 10723787 intergenic not near genes chr3R 10723835 intergenic not near genes chr3R 10723883 intergenic not near genes chr3R_4_10720001 chr3R_10720001 RAL-738 1755 chr3R 10752719 10752753 chr3R 10752804 10752838 12 83 14.0 13.0 13.5 0.8 119 chr3R 10752719 intergenic not near genes chr3R 10752778 intergenic not near genes chr3R 10752838 intergenic CG14691 - chr3R_12_10750001 chr3R_10750001 RAL-738 1756 chr3R 10886891 10886905 chr3R 10886955 10886985 5 74 8.0 11.0 9.5 0.5 94 chr3R 10886891 intron Leash + chr3R 10886938 intron Leash + chr3R 10886985 intron Leash + chr3R_5_10885001 chr3R_10885001 RAL-738 1757 chr3R 10919685 10919716 chr3R 10919761 10919794 13 74 4.0 5.5 4.8 2.2 109 chr3R 10919685 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_13_10915001 chr3R_10915001 RAL-738 1758 chr3R 10920051 10920079 chr3R 10920120 10920157 10 77 3.0 6.5 4.8 1.7 106 chr3R 10920051 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_10_10920001 chr3R_10920001 RAL-738 1759 chr3R 10927284 10927290 chr3R 10927612 10927617 4 328 8.5 12.5 10.5 0.3 333 chr3R 10927284 intergenic not near genes chr3R 10927450 intergenic not near genes chr3R 10927617 intergenic not near genes chr3R_4_10925001 chr3R_10925001 RAL-738 1760 chr3R 10942219 10942251 chr3R 10942301 10942330 4 81 12.0 14.5 13.2 0.3 111 chr3R 10942219 intergenic not near genes chr3R 10942274 intergenic not near genes chr3R 10942330 intergenic not near genes chr3R_4_10940001 chr3R_10940001 RAL-738 1761 chr3R 10994481 10994511 chr3R 10994571 10994600 6 86 8.0 11.0 9.5 0.6 119 chr3R 10994481 intron CG34114 + chr3R 10994540 intron CG34114 + chr3R 10994600 intron CG34114 + chr3R_6_10990001 chr3R_10990001 RAL-738 1762 chr3R 11007571 11007595 chr3R 11007836 11007853 7 264 11.0 9.5 10.2 0.6 282 chr3R 11007571 intron CG34114 + chr3R 11007712 intron CG34114 + chr3R 11007853 intron CG34114 + chr3R_7_11005001 chr3R_11005001 RAL-738 1763 chr3R 11020366 11020384 chr3R 11020603 11020626 4 240 6.5 6.0 6.2 0.6 260 chr3R 11020366 intron CG34114 + chr3R 11020496 intron CG34114 + chr3R 11020626 intron CG34114 + chr3R_4_11020001 chr3R_11020001 RAL-738 1764 chr3R 11056896 11056908 chr3R 11056973 11056986 4 78 11.5 5.5 8.5 0.4 90 chr3R 11056896 intergenic not near genes chr3R 11056941 intergenic not near genes chr3R 11056986 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-738 1765 chr3R 11078952 11078977 chr3R 11079032 11079057 9 80 3.5 6.0 4.8 1.6 105 chr3R 11078952 intergenic not near genes chr3R 11079004 intergenic not near genes chr3R 11079057 intergenic not near genes chr3R_9_11075001 chr3R_11075001 RAL-738 1766 chr3R 11100222 11100250 chr3R 11100566 11100588 11 338 10.5 7.5 9.0 1.1 366 chr3R 11100222 intergenic not near genes chr3R 11100405 intergenic not near genes chr3R 11100588 intergenic not near genes chr3R_11_11100001 chr3R_11100001 RAL-738 1767 chr3R 11102340 11102346 chr3R 11102420 11102427 4 80 12.5 17.5 15.0 0.2 87 chr3R 11102340 intergenic not near genes chr3R 11102384 intergenic not near genes chr3R 11102427 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-738 1768 chr3R 11174605 11174614 chr3R 11175319 11175328 4 713 28.5 43.5 36.0 0.1 723 chr3R 11174605 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-738 1769 chr3R 11197989 11198017 chr3R 11198087 11198116 9 98 4.0 5.0 4.5 1.6 127 chr3R 11197989 intron cu + chr3R 11198052 intron cu + chr3R 11198116 intron cu + chr3R_9_11195001 chr3R_11195001 RAL-738 1770 chr3R 11242256 11242280 chr3R 11242345 11242362 8 86 10.0 14.0 12.0 0.6 106 chr3R 11242256 3` UTR CG17734 - chr3R 11242309 3` UTR CG17734 - chr3R 11242362 3` UTR CG17734 - chr3R_8_11240001 chr3R_11240001 RAL-738 1771 chr3R 11379254 11379266 chr3R 11388407 11388421 roo 4 9154 3.0 9.0 6.0 0.6 9167 chr3R 11379254 intron pros + chr3R 11383838 intron pros + chr3R 11388421 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-738 1772 chr3R 11406286 11406320 chr3R 11406363 11406397 5 77 8.0 10.0 9.0 0.5 111 chr3R 11406286 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406397 3` UTR pros + chr3R_5_11405001 chr3R_11405001 RAL-738 1773 chr3R 11476951 11476970 chr3R 11477053 11477072 7 102 5.0 3.0 4.0 1.4 121 chr3R 11476951 intergenic not near genes chr3R 11477012 intergenic not near genes chr3R 11477072 intergenic not near genes chr3R_7_11475001 chr3R_11475001 RAL-738 1774 chr3R 11489347 11489364 chr3R 11489686 11489703 4 338 10.0 13.0 11.5 0.3 356 chr3R 11489347 intergenic not near genes chr3R 11489525 intergenic not near genes chr3R 11489703 intergenic not near genes chr3R_4_11485001 chr3R_11485001 RAL-738 1775 chr3R 11545976 11546004 chr3R 11546070 11546098 15 94 10.5 9.0 9.8 1.4 122 chr3R 11545976 intergenic not near genes chr3R 11546037 intergenic not near genes chr3R 11546098 intergenic not near genes chr3R_15_11545001 chr3R_11545001 RAL-738 1776 chr3R 11571822 11571849 chr3R 11571915 11571945 8 94 5.0 3.5 4.2 1.5 123 chr3R 11571822 intron Mrp4 + chr3R 11571884 intron Mrp4 + chr3R 11571945 intron Mrp4 + chr3R_8_11570001 chr3R_11570001 RAL-738 1777 chr3R 11589770 11589792 chr3R 11589867 11589882 6 91 10.5 13.0 11.8 0.5 112 chr3R 11589770 exon CG6791 - chr3R 11589826 5` UTR CG6791 - chr3R 11589882 5` UTR CG6791 - chr3R_6_11585001 chr3R_11585001 RAL-738 1778 chr3R 11694729 11694750 chr3R 11694822 11694843 9 92 6.0 3.0 4.5 1.6 114 chr3R 11694729 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694843 intergenic not near genes chr3R_9_11690001 chr3R_11690001 RAL-738 1779 chr3R 11734160 11734190 chr3R 11734279 11734294 14 114 4.5 7.5 6.0 2.0 134 chr3R 11734160 intergenic not near genes chr3R 11734227 intergenic not near genes chr3R 11734294 intergenic not near genes chr3R_14_11730001 chr3R_11730001 RAL-738 1780 chr3R 11832037 11832058 chr3R 11833728 11833749 5 1687 12.5 11.0 11.8 0.4 1712 chr3R 11832037 intron CG6959 - chr3R 11832893 intron CG6959 - chr3R 11833749 intron CG6959 - chr3R_5_11830001 chr3R_11830001 RAL-738 1781 chr3R 11841068 11841096 chr3R 11846249 11846272 BS 10 5182 4.0 4.0 4.0 2.0 5204 chr3R 11841068 intron CG6959 - chr3R 11843670 intron CG6959 - chr3R 11846272 intron CG6959 - chr3R_10_11840001 chr3R_11840001 RAL-738 1782 chr3R 11853435 11853473 chr3R 11853583 11853620 18 144 1.5 7.0 4.2 3.5 185 chr3R 11853435 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_18_11850001 chr3R_11850001 RAL-738 1783 chr3R 11853770 11853802 chr3R 11853875 11853907 25 103 7.5 3.0 5.2 4.0 137 chr3R 11853770 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853907 intron CG6959 - chr3R_25_11850001 chr3R_11850001 RAL-738 1784 chr3R 11909367 11909394 chr3R 11909437 11909453 8 62 14.0 11.5 12.8 0.6 86 chr3R 11909367 intron Cad87A - chr3R 11909410 intron Cad87A - chr3R 11909453 intron Cad87A - chr3R_8_11905001 chr3R_11905001 RAL-738 1785 chr3R 12022884 12022913 chr3R 12025061 12025090 pogo 15 2175 6.0 5.0 5.5 2.3 2206 chr3R 12022884 intergenic not near genes chr3R 12023987 intergenic not near genes chr3R 12025090 intergenic not near genes chr3R_15_12020001 chr3R_12020001 RAL-738 1786 chr3R 12032525 12032557 chr3R 12032609 12032641 10 83 13.5 20.5 17.0 0.6 116 chr3R 12032525 intergenic not near genes chr3R 12032583 intergenic not near genes chr3R 12032641 intergenic ssp5 + chr3R_10_12030001 chr3R_12030001 RAL-738 1787 chr3R 12045180 12045191 chr3R 12045256 12045258 4 74 3.0 2.5 2.8 1.1 78 chr3R 12045180 intergenic not near genes chr3R 12045219 intergenic not near genes chr3R 12045258 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-738 1788 chr3R 12080868 12080898 chr3R 12080945 12080967 7 72 13.0 8.5 10.8 0.6 99 chr3R 12080868 intron CG14741 - chr3R 12080918 intron CG14741 - chr3R 12080967 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-738 1789 chr3R 12082001 12082028 chr3R 12082077 12082104 10 70 16.0 19.0 17.5 0.5 103 chr3R 12082001 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_10_12080001 chr3R_12080001 RAL-738 1790 chr3R 12111913 12111917 chr3R 12111967 12111991 4 66 14.0 13.0 13.5 0.3 78 chr3R 12111913 intergenic dpr17 + chr3R 12111952 intergenic not near genes chr3R 12111991 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-738 1791 chr3R 12163426 12163432 chr3R 12163480 12163501 4 63 27.0 21.5 24.2 0.2 75 chr3R 12163426 exon Cpn - chr3R 12163464 exon Cpn - chr3R 12163501 exon Cpn - chr3R_4_12160001 chr3R_12160001 RAL-738 1792 chr3R 12180039 12180072 chr3R 12180125 12180143 16 78 17.0 18.0 17.5 0.9 104 chr3R 12180039 intergenic not near genes chr3R 12180091 intergenic not near genes chr3R 12180143 intergenic not near genes chr3R_16_12180001 chr3R_12180001 RAL-738 1793 chr3R 12267854 12267887 chr3R 12267934 12267967 15 80 2.0 2.0 2.0 5.0 113 chr3R 12267854 intron svp + chr3R 12267910 intron svp + chr3R 12267967 intron svp + chr3R_15_12265001 chr3R_12265001 RAL-738 1794 chr3R 12306371 12306381 chr3R 12306465 12306470 5 93 19.0 14.5 16.8 0.3 99 chr3R 12306371 intergenic not near genes chr3R 12306420 intergenic not near genes chr3R 12306470 intergenic not near genes chr3R_5_12305001 chr3R_12305001 RAL-738 1795 chr3R 12344131 12344157 chr3R 12344208 12344209 7 70 3.0 7.0 5.0 1.2 78 chr3R 12344131 intergenic not near genes chr3R 12344170 intergenic not near genes chr3R 12344209 intergenic not near genes chr3R_7_12340001 chr3R_12340001 RAL-738 1796 chr3R 12348656 12348681 chr3R 12348761 12348785 7 102 19.5 20.5 20.0 0.3 129 chr3R 12348656 intergenic CG10038 - chr3R 12348720 intergenic CG10038 - chr3R 12348785 intergenic CG10038 - chr3R_7_12345001 chr3R_12345001 RAL-738 1797 chr3R 12399812 12399838 chr3R 12403821 12403848 14 4006 34.0 64.0 49.0 0.3 4036 chr3R 12399812 intron,exon CG34402 +,lig3 - chr3R 12401830 exon,5` UTR CG34402 +,lig3 - chr3R 12403848 exon Cyp9f2 - chr3R_14_12400001 chr3R_12400001 RAL-738 1798 chr3R 12546451 12546485 chr3R 12546534 12546568 18 79 5.0 3.5 4.2 3.5 117 chr3R 12546451 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546568 intron Octbeta3R - chr3R_18_12545001 chr3R_12545001 RAL-738 1799 chr3R 12548983 12549005 chr3R 12549122 12549134 6 136 17.5 14.5 16.0 0.4 151 chr3R 12548983 intergenic not near genes chr3R 12549058 intergenic not near genes chr3R 12549134 intergenic not near genes chr3R_6_12545001 chr3R_12545001 RAL-738 1800 chr3R 12599382 12599405 chr3R 12599458 12599488 4 78 10.0 12.5 11.2 0.3 106 chr3R 12599382 intergenic not near genes chr3R 12599435 intergenic not near genes chr3R 12599488 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-738 1801 chr3R 12676775 12676810 chr3R 12676868 12676896 13 92 24.0 25.5 24.8 0.5 121 chr3R 12676775 3` UTR mbo - chr3R 12676836 3` UTR mbo - chr3R 12676896 exon mbo - chr3R_13_12675001 chr3R_12675001 RAL-738 1802 chr3R 12706463 12706497 chr3R 12715775 12715811 7 9313 64.5 42.5 53.5 0.1 9348 chr3R 12706463 exon mus308 - chr3R 12711137 exon mus308 - chr3R 12715811 intron Men - chr3R_7_12710001 chr3R_12710001 RAL-738 1803 chr3R 12733475 12733489 chr3R 12733552 12733558 7 75 7.0 1.0 4.0 1.4 83 chr3R 12733475 intergenic not near genes chr3R 12733516 intergenic not near genes chr3R 12733558 intergenic not near genes chr3R_7_12730001 chr3R_12730001 RAL-738 1804 chr3R 12733496 12733509 chr3R 12733551 12733568 10 66 3.0 1.0 2.0 3.3 72 chr3R 12733496 intergenic not near genes chr3R 12733532 intergenic not near genes chr3R 12733568 intergenic not near genes chr3R_10_12730001 chr3R_12730001 RAL-738 1805 chr3R 12763127 12763153 chr3R 12763204 12763230 6 76 8.5 9.0 8.8 0.6 103 chr3R 12763127 intron beat-Vc - chr3R 12763178 intron beat-Vc - chr3R 12763230 intron beat-Vc - chr3R_6_12760001 chr3R_12760001 RAL-738 1806 chr3R 12833531 12833556 chr3R 12833718 12833743 6 182 15.0 14.0 14.5 0.4 212 chr3R 12833531 intergenic not near genes chr3R 12833637 intergenic not near genes chr3R 12833743 intergenic not near genes chr3R_6_12830001 chr3R_12830001 RAL-738 1807 chr3R 12864568 12864592 chr3R 12865053 12865077 roo 4 485 1.0 4.0 2.5 1.1 509 chr3R 12864568 intergenic not near genes chr3R 12864822 intergenic not near genes chr3R 12865077 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-738 1808 chr3R 12866490 12866513 chr3R 12866641 12866664 6 151 12.0 12.5 12.2 0.5 174 chr3R 12866490 intergenic not near genes chr3R 12866577 intergenic not near genes chr3R 12866664 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-738 1809 chr3R 12920156 12920185 chr3R 12925359 12925363 copia 8 5195 2.5 9.5 6.0 1.1 5207 chr3R 12920156 intron beat-Vb + chr3R 12922760 intron beat-Vb + chr3R 12925363 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-738 1810 chr3R 13045791 13045800 chr3R 13053027 13053036 5 7237 32.0 44.0 38.0 0.1 7245 chr3R 13045791 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053036 intron pic + chr3R_5_13045001 chr3R_13045001 RAL-738 1811 chr3R 13067121 13067131 chr3R 13067190 13067207 6 75 6.5 12.0 9.2 0.6 86 chr3R 13067121 intron sim + chr3R 13067164 intron sim + chr3R 13067207 intron sim + chr3R_6_13065001 chr3R_13065001 RAL-738 1812 chr3R 13075362 13075371 chr3R 13075443 13075452 5 81 5.5 2.5 4.0 1.0 90 chr3R 13075362 intron sim + chr3R 13075407 intron sim + chr3R 13075452 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-738 1813 chr3R 13104419 13104420 chr3R 21907534 21907536 9 8803115 26.5 36.5 31.5 0.3 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_9_17505001 chr3R_17505001 RAL-738 1814 chr3R 13120771 13120791 chr3R 13120848 13120860 6 74 9.5 7.0 8.2 0.7 89 chr3R 13120771 intron timeout + chr3R 13120816 intron timeout + chr3R 13120860 intron timeout + chr3R_6_13120001 chr3R_13120001 RAL-738 1815 chr3R 13135837 13135858 chr3R 13138002 13138010 pogo 7 2167 4.5 3.5 4.0 1.4 2173 chr3R 13135837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136924 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138010 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-738 1816 chr3R 13143042 13143066 chr3R 13148618 13148632 mdg3 8 5573 2.5 5.0 3.8 1.7 5590 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148632 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-738 1817 chr3R 13205427 13205442 chr3R 13205493 13205523 4 75 16.5 17.0 16.8 0.2 96 chr3R 13205427 intergenic not near genes chr3R 13205475 intergenic not near genes chr3R 13205523 intergenic not near genes chr3R_4_13205001 chr3R_13205001 RAL-738 1818 chr3R 7773344 7773344 chr3R 13217322 13217322 7 5443978 16.5 15.0 15.8 0.4 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_7_10495001 chr3R_10495001 RAL-738 1819 chr3R 13274216 13274247 chr3R 13274295 13274326 7 76 19.5 16.0 17.8 0.4 110 chr3R 13274216 intergenic not near genes chr3R 13274271 intergenic not near genes chr3R 13274326 intergenic not near genes chr3R_7_13270001 chr3R_13270001 RAL-738 1820 chr3R 13314106 13314132 chr3R 13318894 13318919 Doc 6 4787 1.0 9.5 5.2 1.0 4813 chr3R 13314106 intergenic not near genes chr3R 13316512 intergenic not near genes chr3R 13318919 intergenic CG45080 - chr3R_6_13315001 chr3R_13315001 RAL-738 1821 chr3R 13408458 13408470 chr3R 13408534 13408546 5 76 8.5 7.5 8.0 0.6 88 chr3R 13408458 intergenic not near genes chr3R 13408502 intergenic not near genes chr3R 13408546 intergenic not near genes chr3R_5_13405001 chr3R_13405001 RAL-738 1822 chr3R 13418219 13418363 chr3R 13418297 13418441 11 77 12.0 12.0 12.0 0.8 222 chr3R 13418219 intergenic not near genes chr3R 13418330 intergenic not near genes chr3R 13418441 intergenic not near genes chr3R_11_13415001 chr3R_13415001 RAL-738 1823 chr3R 13419082 13419099 chr3R 13419160 13419177 4 78 8.5 14.0 11.2 0.3 95 chr3R 13419082 intergenic not near genes chr3R 13419130 intergenic not near genes chr3R 13419177 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-738 1824 chr3R 13517223 13517257 chr3R 13520040 13520049 jockey 10 2814 1.5 2.0 1.8 3.6 2826 chr3R 13517223 intergenic not near genes chr3R 13518636 intergenic not near genes chr3R 13520049 intergenic not near genes chr3R_10_13515001 chr3R_13515001 RAL-738 1825 chr3R 13599053 13599083 chr3R 13599133 13599163 4 80 0.5 3.0 1.8 1.4 110 chr3R 13599053 intergenic not near genes chr3R 13599108 intergenic not near genes chr3R 13599163 intergenic not near genes chr3R_4_13595001 chr3R_13595001 RAL-738 1826 chr3R 13604064 13604090 chr3R 13604299 13604325 6 235 9.0 5.5 7.2 0.7 261 chr3R 13604064 intergenic not near genes chr3R 13604194 intergenic not near genes chr3R 13604325 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-738 1827 chr3R 13668273 13668295 chr3R 13668353 13668358 4 76 12.5 15.0 13.8 0.3 85 chr3R 13668273 3` UTR Task6 - chr3R 13668316 3` UTR Task6 - chr3R 13668358 3` UTR Task6 - chr3R_4_13665001 chr3R_13665001 RAL-738 1828 chr3R 13672941 13672969 chr3R 13673019 13673047 9 76 14.5 17.0 15.8 0.5 106 chr3R 13672941 intron Task6 - chr3R 13672994 intron Task6 - chr3R 13673047 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-738 1829 chr3R 13693028 13693028 chr3R 21907534 21907536 10 8214507 28.0 36.5 32.2 0.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-738 1830 chr3R 13744797 13744826 chr3R 13744886 13744901 5 86 13.0 10.0 11.5 0.4 104 chr3R 13744797 intron CG34383 + chr3R 13744849 intron CG34383 + chr3R 13744901 intron CG34383 + chr3R_5_13740001 chr3R_13740001 RAL-738 1831 chr3R 13803896 13803905 chr3R 13804117 13804126 5 221 0.5 0.0 0.2 4.2 230 chr3R 13803896 intergenic not near genes chr3R 13804011 intergenic not near genes chr3R 13804126 intergenic not near genes chr3R_5_13800001 chr3R_13800001 RAL-738 1832 chr3R 13863704 13863716 chr3R 13863789 13863804 4 86 11.0 13.0 12.0 0.3 100 chr3R 13863704 intergenic not near genes chr3R 13863754 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-738 1833 chr3R 13887435 13887455 chr3R 13887557 13887582 5 130 15.0 10.0 12.5 0.4 147 chr3R 13887435 intergenic not near genes chr3R 13887508 intergenic not near genes chr3R 13887582 intergenic not near genes chr3R_5_13885001 chr3R_13885001 RAL-738 1834 chr3R 14021647 14021678 chr3R 14023464 14023485 S-element 7 1815 13.0 6.0 9.5 0.7 1838 chr3R 14021647 intron rdx - chr3R 14022566 intron rdx - chr3R 14023485 intron rdx - chr3R_7_14020001 chr3R_14020001 RAL-738 1835 chr3R 14067142 14067155 chr3R 14067221 14067234 7 79 3.0 3.5 3.2 1.7 92 chr3R 14067142 exon foxo + chr3R 14067188 intron foxo + chr3R 14067234 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-738 1836 chr3R 14070131 14070145 chr3R 14070212 14070225 6 80 18.0 24.5 21.2 0.3 94 chr3R 14070131 intron foxo + chr3R 14070178 intron foxo + chr3R 14070225 intron foxo + chr3R_6_14070001 chr3R_14070001 RAL-738 1837 chr3R 14083407 14083426 chr3R 14083508 14083527 6 101 7.0 2.5 4.8 1.0 120 chr3R 14083407 intron foxo + chr3R 14083467 intron foxo + chr3R 14083527 intron foxo + chr3R_6_14080001 chr3R_14080001 RAL-738 1838 chr3R 14117437 14117473 chr3R 14117513 14117549 9 74 6.5 4.0 5.2 1.5 112 chr3R 14117437 intron Kif19A - chr3R 14117493 intron Kif19A - chr3R 14117549 intron Kif19A - chr3R_9_14115001 chr3R_14115001 RAL-738 1839 chr3R 14161457 14161480 chr3R 14161542 14161557 5 83 12.5 14.0 13.2 0.4 100 chr3R 14161457 intergenic not near genes chr3R 14161507 intergenic not near genes chr3R 14161557 intergenic not near genes chr3R_5_14160001 chr3R_14160001 RAL-738 1840 chr3R 14174296 14174305 chr3R 14174376 14174385 4 80 13.0 15.5 14.2 0.3 89 chr3R 14174296 3` UTR Dop1R1 - chr3R 14174340 3` UTR Dop1R1 - chr3R 14174385 3` UTR Dop1R1 - chr3R_4_14170001 chr3R_14170001 RAL-738 1841 chr3R 14174310 14174322 chr3R 14174369 14174402 7 69 10.5 14.5 12.5 0.5 92 chr3R 14174310 3` UTR Dop1R1 - chr3R 14174356 3` UTR Dop1R1 - chr3R 14174402 3` UTR Dop1R1 - chr3R_7_14170001 chr3R_14170001 RAL-738 1842 chr3R 14180811 14180832 chr3R 14185576 14185576 F-element 9 4759 3.5 5.0 4.2 1.7 4765 chr3R 14180811 intron Dop1R1 - chr3R 14183194 intron Dop1R1 - chr3R 14185576 intron Dop1R1 - chr3R_9_14180001 chr3R_14180001 RAL-738 1843 chr3R 14246409 14246415 chr3R 14247886 14247905 jockey 4 1489 6.5 7.0 6.8 0.5 1496 chr3R 14246409 intergenic not near genes chr3R 14247157 intergenic not near genes chr3R 14247905 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-738 1844 chr3R 14363723 14363750 chr3R 14363805 14363830 8 82 16.0 12.0 14.0 0.5 107 chr3R 14363723 intron NK7.1 - chr3R 14363776 intron NK7.1 - chr3R 14363830 intron NK7.1 - chr3R_8_14360001 chr3R_14360001 RAL-738 1845 chr3R 14608469 14608476 chr3R 14608561 14608568 5 91 3.5 8.5 6.0 0.7 99 chr3R 14608469 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608568 intergenic stumps + chr3R_5_14605001 chr3R_14605001 RAL-738 1846 chr3R 14611754 14611772 chr3R 14611955 14611965 5 201 16.0 14.5 15.2 0.3 211 chr3R 14611754 intron CG14853 + chr3R 14611860 intron CG14853 + chr3R 14611965 intron CG14853 + chr3R_5_14610001 chr3R_14610001 RAL-738 1847 chr3R 14682881 14682889 chr3R 14682953 14682970 4 82 5.0 1.5 3.2 1.0 89 chr3R 14682881 intron Meltrin - chr3R 14682926 intron Meltrin - chr3R 14682970 intron Meltrin - chr3R_4_14680001 chr3R_14680001 RAL-738 1848 chr3R 14704387 14704418 chr3R 14704464 14704495 6 74 11.5 13.0 12.2 0.5 108 chr3R 14704387 intron kibra - chr3R 14704441 intron kibra - chr3R 14704495 intron kibra - chr3R_6_14700001 chr3R_14700001 RAL-738 1849 chr3R 14804778 14804794 chr3R 14804871 14804886 8 92 4.0 2.0 3.0 2.0 108 chr3R 14804778 3` UTR btsz - chr3R 14804832 3` UTR btsz - chr3R 14804886 3` UTR btsz - chr3R_8_14800001 chr3R_14800001 RAL-738 1850 chr3R 14812228 14812242 chr3R 14812308 14812332 5 82 20.5 9.5 15.0 0.3 104 chr3R 14812228 intron btsz - chr3R 14812280 intron btsz - chr3R 14812332 intron btsz - chr3R_5_14810001 chr3R_14810001 RAL-738 1851 chr3R 14821613 14821646 chr3R 14821762 14821779 7 146 13.5 13.0 13.2 0.5 166 chr3R 14821613 intron btsz - chr3R 14821696 intron btsz - chr3R 14821779 intron btsz - chr3R_7_14820001 chr3R_14820001 RAL-738 1852 chr3R 14837823 14838061 chr3R 14837913 14838151 23 84 18.0 14.0 16.0 1.4 328 chr3R 14837823 intron btsz - chr3R 14837987 intron btsz - chr3R 14838151 intron btsz - chr3R_23_14835001 chr3R_14835001 RAL-738 1853 chr3R 14875484 14875485 chr3R 14875623 14875644 4 148 27.0 23.5 25.2 0.2 160 chr3R 14875484 5` UTR btsz - chr3R 14875564 intergenic btsz - chr3R 14875644 intergenic btsz - chr3R_4_14875001 chr3R_14875001 RAL-738 1854 chr3R 14923728 14923744 chr3R 14923805 14923821 5 77 6.0 13.0 9.5 0.5 93 chr3R 14923728 3` UTR CR45598 - chr3R 14923774 intergenic CR45598 - chr3R 14923821 intergenic CR45598 - chr3R_5_14920001 chr3R_14920001 RAL-738 1855 chr3R 14923745 14923748 chr3R 14923794 14923805 4 65 7.0 11.0 9.0 0.4 60 chr3R 14923745 3` UTR CR45598 - chr3R 14923775 intergenic CR45598 - chr3R 14923805 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-738 1856 chr3R 14924370 14924400 chr3R 14924456 14924486 6 85 11.5 13.0 12.2 0.5 116 chr3R 14924370 intergenic not near genes chr3R 14924428 intergenic not near genes chr3R 14924486 intergenic not near genes chr3R_6_14920001 chr3R_14920001 RAL-738 1857 chr3R 14953989 14954017 chr3R 14954094 14954122 6 105 6.5 3.5 5.0 1.0 133 chr3R 14953989 intergenic not near genes chr3R 14954056 intergenic not near genes chr3R 14954122 intergenic not near genes chr3R_6_14950001 chr3R_14950001 RAL-738 1858 chr3R 15041403 15041453 chr3R 15045187 15045221 Doc 7 3771 1.0 4.0 2.5 2.0 3818 chr3R 15041403 intergenic not near genes chr3R 15043312 intergenic not near genes chr3R 15045221 intergenic not near genes chr3R_7_15040001 chr3R_15040001 RAL-738 1859 chr3R 15059277 15059481 chr3R 15059470 15059568 BS 6 122 2.5 3.5 3.0 1.5 291 chr3R 15059277 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_6_15055001 chr3R_15055001 RAL-738 1860 chr3R 15071195 15071220 chr3R 15071319 15071345 7 120 11.0 17.5 14.2 0.5 150 chr3R 15071195 intron dpr9 - chr3R 15071270 intron dpr9 - chr3R 15071345 intron dpr9 - chr3R_7_15070001 chr3R_15070001 RAL-738 1861 chr3R 15079806 15079836 chr3R 15080047 15080073 pogo 11 238 4.0 0.0 2.0 3.7 267 chr3R 15079806 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080073 3` UTR CG6966 - chr3R_11_15075001 chr3R_15075001 RAL-738 1862 chr3R 15102492 15102529 chr3R 15109751 15109784 412 10 7257 4.0 3.5 3.8 2.1 7292 chr3R 15102492 intron CG42788 - chr3R 15106138 intron CG42788 - chr3R 15109784 intron CG42788 - chr3R_10_15105001 chr3R_15105001 RAL-738 1863 chr3R 15119471 15119482 chr3R 15119627 15119637 6 156 13.5 9.0 11.2 0.5 166 chr3R 15119471 intron CG42788 - chr3R 15119554 intron CG42788 - chr3R 15119637 intron CG42788 - chr3R_6_15115001 chr3R_15115001 RAL-738 1864 chr3R 15127792 15127805 chr3R 15127872 15127885 7 80 3.0 8.0 5.5 1.1 93 chr3R 15127792 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127885 intron CG42788 - chr3R_7_15125001 chr3R_15125001 RAL-738 1865 chr3R 15132062 15132066 chr3R 15135119 15135126 Juan 6 3059 20.5 17.5 19.0 0.3 3064 chr3R 15132062 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135126 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-738 1866 chr3R 15132071 15132080 chr3R 15135116 15135140 Juan 4 3051 14.0 15.5 14.8 0.3 3069 chr3R 15132071 intergenic CG42788 - chr3R 15133606 intergenic not near genes chr3R 15135140 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-738 1867 chr3R 15155513 15155546 chr3R 15155600 15155633 10 87 7.0 9.5 8.2 1.1 120 chr3R 15155513 intron Gyc88E + chr3R 15155573 intron Gyc88E + chr3R 15155633 intron Gyc88E + chr3R_10_15155001 chr3R_15155001 RAL-738 1868 chr3R 15156603 15156634 chr3R 15156683 15156712 6 79 16.5 12.5 14.5 0.4 109 chr3R 15156603 intron Gyc88E + chr3R 15156658 intron Gyc88E + chr3R 15156712 intron Gyc88E + chr3R_6_15155001 chr3R_15155001 RAL-738 1869 chr3R 15160564 15160591 chr3R 15160662 15160689 4 98 5.5 12.5 9.0 0.4 125 chr3R 15160564 intron Gyc88E + chr3R 15160626 intron Gyc88E + chr3R 15160689 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-738 1870 chr3R 15162574 15162577 chr3R 15167310 15167344 F-element 4 4752 4.5 2.0 3.2 1.0 4770 chr3R 15162574 intron Gyc88E + chr3R 15164959 intron Gyc88E + chr3R 15167344 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-738 1871 chr3R 15184537 15184567 chr3R 15184618 15184649 6 77 15.0 20.5 17.8 0.3 112 chr3R 15184537 intron Gyc88E + chr3R 15184593 intron Gyc88E + chr3R 15184649 intron Gyc88E + chr3R_6_15180001 chr3R_15180001 RAL-738 1872 chr3R 15246921 15246932 chr3R 15247054 15247064 4 132 5.5 14.0 9.8 0.4 143 chr3R 15246921 intergenic CG6499 -,Hsc70-4 + chr3R 15246992 intergenic CG6499 -,Hsc70-4 + chr3R 15247064 intergenic CG6499 -,Hsc70-4 + chr3R_4_15245001 chr3R_15245001 RAL-738 1873 chr3R 15279209 15279229 chr3R 15279368 15279375 9 158 10.5 5.0 7.8 1.0 166 chr3R 15279209 intergenic not near genes chr3R 15279292 intergenic not near genes chr3R 15279375 intergenic not near genes chr3R_9_15275001 chr3R_15275001 RAL-738 1874 chr3R 15286987 15286988 chr3R 21907535 21907536 4 6620548 24.0 36.5 30.2 0.1 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-738 1875 chr3R 15406133 15406171 chr3R 15406214 15406252 10 79 5.0 0.0 2.5 2.9 119 chr3R 15406133 intron CG6125 - chr3R 15406192 intron CG6125 - chr3R 15406252 intron CG6125 - chr3R_10_15405001 chr3R_15405001 RAL-738 1876 chr3R 15416250 15416285 chr3R 15416330 15416334 7 71 1.5 6.0 3.8 1.5 84 chr3R 15416250 3` UTR Atx2 + chr3R 15416292 3` UTR Atx2 + chr3R 15416334 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-738 1877 chr3R 15601168 15601193 chr3R 15608688 15608715 412 8 7518 7.5 4.5 6.0 1.1 7547 chr3R 15601168 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-738 1878 chr3R 15618733 15618764 chr3R 15626207 15626238 blood 12 7474 1.5 9.0 5.2 1.9 7505 chr3R 15618733 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_12_15620001 chr3R_15620001 RAL-738 1879 chr3R 15646792 15646925 chr3R 15646875 15647008 6 86 14.0 14.0 14.0 0.4 216 chr3R 15646792 intergenic not near genes chr3R 15646900 intergenic not near genes chr3R 15647008 intergenic not near genes chr3R_6_15645001 chr3R_15645001 RAL-738 1880 chr3R 15691318 15691330 chr3R 15691404 15691417 5 87 11.5 8.5 10.0 0.5 99 chr3R 15691318 intergenic not near genes chr3R 15691368 intergenic not near genes chr3R 15691417 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-738 1881 chr3R 15692519 15692546 chr3R 15692598 15692625 10 79 11.0 11.5 11.2 0.8 106 chr3R 15692519 intergenic not near genes chr3R 15692572 intergenic not near genes chr3R 15692625 intergenic CG31446 + chr3R_10_15690001 chr3R_15690001 RAL-738 1882 chr3R 15734860 15734884 chr3R 15734965 15734989 7 102 16.5 17.0 16.8 0.4 129 chr3R 15734860 intergenic not near genes chr3R 15734924 intergenic not near genes chr3R 15734989 intergenic not near genes chr3R_7_15730001 chr3R_15730001 RAL-738 1883 chr3R 15811504 15811530 chr3R 15811744 15811757 6 232 12.5 17.0 14.8 0.4 253 chr3R 15811504 intron alpha-Man-IIb + chr3R 15811630 intron alpha-Man-IIb + chr3R 15811757 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_6_15810001 chr3R_15810001 RAL-738 1884 chr3R 15817260 15817278 chr3R 15818262 15818280 4 1002 6.5 19.5 13.0 0.3 1020 chr3R 15817260 intron alpha-Man-IIb + chr3R 15817770 intron alpha-Man-IIb + chr3R 15818280 intron alpha-Man-IIb + chr3R_4_15815001 chr3R_15815001 RAL-738 1885 chr3R 15868947 15868960 chr3R 15869027 15869040 8 80 8.5 0.0 4.2 1.5 93 chr3R 15868947 intron CG31183 - chr3R 15868994 intron CG31183 - chr3R 15869040 intron CG31183 - chr3R_8_15865001 chr3R_15865001 RAL-738 1886 chr3R 15878099 15878306 chr3R 15878187 15878383 5 81 5.5 4.5 5.0 0.8 284 chr3R 15878099 intergenic not near genes chr3R 15878241 intergenic not near genes chr3R 15878383 intergenic not near genes chr3R_5_15875001 chr3R_15875001 RAL-738 1887 chr3R 15891676 15891685 chr3R 15892055 15892061 5 385 5.5 2.0 3.8 1.0 385 chr3R 15891676 intron CG14877 - chr3R 15891868 intron CG14877 - chr3R 15892061 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-738 1888 chr3R 15892652 15892689 chr3R 15892732 15892770 17 79 3.5 4.0 3.8 3.5 118 chr3R 15892652 intron CG14877 - chr3R 15892711 intron CG14877 - chr3R 15892770 intron CG14877 - chr3R_17_15890001 chr3R_15890001 RAL-738 1889 chr3R 15942054 15942081 chr3R 15942809 15942829 12 752 13.5 14.0 13.8 0.8 775 chr3R 15942054 intron Sap47 + chr3R 15942442 intron Sap47 + chr3R 15942829 intron Sap47 + chr3R_12_15940001 chr3R_15940001 RAL-738 1890 chr3R 15984503 15984529 chr3R 15984605 15984625 9 101 12.5 10.5 11.5 0.7 122 chr3R 15984503 intergenic not near genes chr3R 15984564 intergenic not near genes chr3R 15984625 intergenic not near genes chr3R_9_15980001 chr3R_15980001 RAL-738 1891 chr3R 16033413 16033441 chr3R 16033494 16033522 11 81 3.0 3.0 3.0 2.8 109 chr3R 16033413 intron pnr + chr3R 16033468 intron pnr + chr3R 16033522 intron pnr + chr3R_11_16030001 chr3R_16030001 RAL-738 1892 chr3R 16048857 16048883 chr3R 16048943 16048965 5 80 12.0 11.0 11.5 0.4 108 chr3R 16048857 intron ird5 - chr3R 16048911 intron ird5 - chr3R 16048965 intron ird5 - chr3R_5_16045001 chr3R_16045001 RAL-738 1893 chr3R 16111457 16111480 chr3R 16111533 16111544 5 73 15.5 15.0 15.2 0.3 87 chr3R 16111457 intergenic not near genes chr3R 16111500 intergenic not near genes chr3R 16111544 intergenic not near genes chr3R_5_16110001 chr3R_16110001 RAL-738 1894 chr3R 16215101 16215130 chr3R 16215206 16215235 11 104 3.0 5.0 4.0 2.2 134 chr3R 16215101 intergenic CR45641 + chr3R 16215168 intergenic CR45641 + chr3R 16215235 intergenic CR45641 + chr3R_11_16215001 chr3R_16215001 RAL-738 1895 chr3R 16246523 16246551 chr3R 16246599 16246627 4 71 8.0 14.0 11.0 0.3 104 chr3R 16246523 intron tara + chr3R 16246575 intron tara + chr3R 16246627 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-738 1896 chr3R 16253538 16253571 chr3R 16253623 16253656 5 83 2.5 3.5 3.0 1.2 118 chr3R 16253538 intron tara + chr3R 16253597 intron tara + chr3R 16253656 intron tara + chr3R_5_16250001 chr3R_16250001 RAL-738 1897 chr3R 16374295 16374318 chr3R 16374411 16374435 8 117 2.5 4.0 3.2 1.9 140 chr3R 16374295 intergenic ss - chr3R 16374365 intergenic ss - chr3R 16374435 3` UTR ss - chr3R_8_16370001 chr3R_16370001 RAL-738 1898 chr3R 16464516 16464542 chr3R 16464698 16464712 4 182 13.0 12.0 12.5 0.3 196 chr3R 16464516 exon CG42232 - chr3R 16464614 exon CG42232 - chr3R 16464712 exon CG42232 - chr3R_4_16460001 chr3R_16460001 RAL-738 1899 chr3R 16472578 16472595 chr3R 16472654 16472670 8 71 12.0 8.5 10.2 0.7 92 chr3R 16472578 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-738 1900 chr3R 16472598 16472606 chr3R 16472644 16472661 4 57 9.5 10.5 10.0 0.4 63 chr3R 16472598 intergenic Gyc-89Da + chr3R 16472630 5` UTR Gyc-89Da + chr3R 16472661 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-738 1901 chr3R 16490675 16490689 chr3R 16490755 16490756 6 78 23.5 19.0 21.2 0.3 81 chr3R 16490675 exon Cad89D - chr3R 16490716 exon Cad89D - chr3R 16490756 exon Cad89D - chr3R_6_16490001 chr3R_16490001 RAL-738 1902 chr3R 16508158 16508192 chr3R 16508243 16508278 9 78 14.0 17.0 15.5 0.5 120 chr3R 16508158 intron CG42342 + chr3R 16508218 intron CG42342 + chr3R 16508278 intron CG42342 + chr3R_9_16505001 chr3R_16505001 RAL-738 1903 chr3R 16589605 16589622 chr3R 16589682 16589684 6 76 14.5 16.5 15.5 0.4 79 chr3R 16589605 intergenic not near genes chr3R 16589644 intergenic not near genes chr3R 16589684 intergenic not near genes chr3R_6_16585001 chr3R_16585001 RAL-738 1904 chr3R 16617212 16617233 chr3R 16617295 16617318 5 83 14.5 10.5 12.5 0.4 106 chr3R 16617212 intergenic CG17562 + chr3R 16617265 intergenic CG17562 + chr3R 16617318 intergenic CG17562 + chr3R_5_16615001 chr3R_16615001 RAL-738 1905 chr3R 16756317 16756354 chr3R 16762508 16762525 diver 13 6186 2.5 2.5 2.5 3.7 6208 chr3R 16756317 intron bxd - chr3R 16759421 intron bxd - chr3R 16762525 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-738 1906 chr3R 16779438 16779466 chr3R 16779525 16779537 6 78 11.5 11.0 11.2 0.5 99 chr3R 16779438 intergenic not near genes chr3R 16779488 intergenic not near genes chr3R 16779537 intergenic not near genes chr3R_6_16775001 chr3R_16775001 RAL-738 1907 chr3R 16820259 16820279 chr3R 16820353 16820371 5 93 12.0 7.0 9.5 0.5 112 chr3R 16820259 intron abd-A - chr3R 16820315 intron abd-A - chr3R 16820371 intron abd-A - chr3R_5_16820001 chr3R_16820001 RAL-738 1908 chr3R 16921827 16921865 chr3R 16921911 16921949 5 84 6.0 9.0 7.5 0.6 122 chr3R 16921827 intron iab-8 - chr3R 16921888 intron iab-8 - chr3R 16921949 intron iab-8 - chr3R_5_16920001 chr3R_16920001 RAL-738 1909 chr3R 16953693 16953729 chr3R 16953840 16953870 5 146 9.0 8.5 8.8 0.5 177 chr3R 16953693 intron Abd-B - chr3R 16953782 intron Abd-B - chr3R 16953870 intron Abd-B - chr3R_5_16950001 chr3R_16950001 RAL-738 1910 chr3R 17121526 17121556 chr3R 17121721 17121751 8 193 15.0 14.5 14.8 0.5 225 chr3R 17121526 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_8_17120001 chr3R_17120001 RAL-738 1911 chr3R 17268675 17268700 chr3R 17268797 17268822 6 122 8.5 10.0 9.2 0.6 147 chr3R 17268675 intergenic not near genes chr3R 17268748 intergenic not near genes chr3R 17268822 intergenic not near genes chr3R_6_17265001 chr3R_17265001 RAL-738 1912 chr3R 17294667 17294701 chr3R 17295095 17295125 BS 11 425 2.5 5.0 3.8 2.3 458 chr3R 17294667 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295125 intergenic not near genes chr3R_11_17290001 chr3R_17290001 RAL-738 1913 chr3R 17312816 17312842 chr3R 17312901 17312903 6 79 8.5 7.5 8.0 0.7 87 chr3R 17312816 intergenic not near genes chr3R 17312860 intergenic not near genes chr3R 17312903 intergenic not near genes chr3R_6_17310001 chr3R_17310001 RAL-738 1914 chr3R 17346692 17346699 chr3R 17348251 17348262 F-element 5 1562 5.0 5.5 5.2 0.8 1570 chr3R 17346692 intron beat-IIa - chr3R 17347477 intron beat-IIa - chr3R 17348262 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-738 1915 chr3R 17346701 17346717 chr3R 17348249 17348280 F-element 13 1559 3.0 5.5 4.2 2.5 1579 chr3R 17346701 intron beat-IIa - chr3R 17347490 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_13_17345001 chr3R_17345001 RAL-738 1916 chr3R 17355494 17355523 chr3R 17355571 17355599 10 74 4.5 5.0 4.8 1.7 105 chr3R 17355494 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_10_17355001 chr3R_17355001 RAL-738 1917 chr3R 17389054 17389054 chr3R 21907534 21907535 4 4518481 9.5 36.5 23.0 0.2 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-738 1918 chr3R 17393158 17393188 chr3R 17393234 17393264 9 76 14.0 14.5 14.2 0.6 106 chr3R 17393158 intergenic CREG -,sds22 + chr3R 17393211 intergenic CREG -,sds22 + chr3R 17393264 intergenic CREG -,sds22 + chr3R_9_17390001 chr3R_17390001 RAL-738 1919 chr3R 17461199 17461232 chr3R 17461280 17461314 11 80 1.5 2.5 2.0 3.7 115 chr3R 17461199 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461314 intergenic not near genes chr3R_11_17460001 chr3R_17460001 RAL-738 1920 chr3R 17497964 17497986 chr3R 17498050 17498072 10 84 12.0 10.5 11.2 0.8 108 chr3R 17497964 intron Dscam3 - chr3R 17498018 intron Dscam3 - chr3R 17498072 intron Dscam3 - chr3R_10_17495001 chr3R_17495001 RAL-738 1921 chr3R 17507670 17507682 chr3R 17507744 17507760 5 77 16.0 19.0 17.5 0.3 90 chr3R 17507670 intergenic not near genes chr3R 17507715 intergenic not near genes chr3R 17507760 intergenic not near genes chr3R_5_17505001 chr3R_17505001 RAL-738 1922 chr3R 17521569 17521585 chr3R 17521718 17521742 6 152 6.5 12.5 9.5 0.6 173 chr3R 17521569 intergenic not near genes chr3R 17521656 intergenic not near genes chr3R 17521742 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-738 1923 chr3R 17546083 17546101 chr3R 17546167 17546168 5 80 8.5 8.5 8.5 0.5 85 chr3R 17546083 intron Prx3 - chr3R 17546126 intron Prx3 - chr3R 17546168 intron Prx3 - chr3R_5_17545001 chr3R_17545001 RAL-738 1924 chr3R 17587215 17587235 chr3R 17587398 17587417 6 180 7.0 5.0 6.0 0.9 202 chr3R 17587215 intergenic not near genes chr3R 17587316 intergenic not near genes chr3R 17587417 intergenic not near genes chr3R_6_17585001 chr3R_17585001 RAL-738 1925 chr3R 17587237 17587244 chr3R 17587393 17587427 11 174 1.5 4.5 3.0 2.8 190 chr3R 17587237 intergenic not near genes chr3R 17587332 intergenic not near genes chr3R 17587427 intergenic not near genes chr3R_11_17585001 chr3R_17585001 RAL-738 1926 chr3R 17591302 17591327 chr3R 17591718 17591729 F-element 6 422 3.0 4.5 3.8 1.2 427 chr3R 17591302 intergenic not near genes chr3R 17591516 intergenic not near genes chr3R 17591729 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-738 1927 chr3R 17638317 17638351 chr3R 17638803 17638837 roo 19 485 4.0 4.0 4.0 3.8 520 chr3R 17638317 intron CG43175 + chr3R 17638577 intron CG43175 + chr3R 17638837 intron,intron CG43175 +,CR45222 + chr3R_19_17635001 chr3R_17635001 RAL-738 1928 chr3R 17657653 17657661 chr3R 17657804 17657812 INE-1 4 151 13.0 15.5 14.2 0.3 159 chr3R 17657653 intron CG14322 + chr3R 17657732 intron CG14322 + chr3R 17657812 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-738 1929 chr3R 17678594 17678614 chr3R 17678981 17679001 4 386 21.5 10.5 16.0 0.2 407 chr3R 17678594 intron alt - chr3R 17678798 intron alt - chr3R 17679001 intron alt - chr3R_4_17675001 chr3R_17675001 RAL-738 1930 chr3R 17811200 17811225 chr3R 17811280 17811305 5 80 6.5 5.0 5.8 0.7 105 chr3R 17811200 intergenic CG18012 -,tinc + chr3R 17811252 intergenic CG18012 -,tinc + chr3R 17811305 intergenic CG18012 -,tinc + chr3R_5_17810001 chr3R_17810001 RAL-738 1931 chr3R 17823209 17823233 chr3R 17823294 17823318 8 84 6.0 2.0 4.0 1.6 109 chr3R 17823209 intron tinc + chr3R 17823264 intron tinc + chr3R 17823318 intron tinc + chr3R_8_17820001 chr3R_17820001 RAL-738 1932 chr3R 17845211 17845217 chr3R 17845267 17845277 4 58 16.0 22.5 19.2 0.2 66 chr3R 17845211 intron tinc + chr3R 17845244 intron tinc + chr3R 17845277 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-738 1933 chr3R 17899098 17899109 chr3R 17899176 17899187 8 77 5.5 2.5 4.0 1.6 89 chr3R 17899098 intron Rim - chr3R 17899142 intron Rim - chr3R 17899187 intron Rim - chr3R_8_17895001 chr3R_17895001 RAL-738 1934 chr3R 17925852 17925863 chr3R 17927319 17927330 hobo 6 1467 9.0 10.0 9.5 0.6 1478 chr3R 17925852 intron cpo + chr3R 17926591 intron cpo + chr3R 17927330 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-738 1935 chr3R 17925873 17925888 chr3R 17927338 17927347 hobo 7 1464 6.0 16.0 11.0 0.6 1474 chr3R 17925873 intron cpo + chr3R 17926610 intron cpo + chr3R 17927347 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-738 1936 chr3R 17935099 17935103 chr3R 17935165 17935179 6 74 21.5 17.5 19.5 0.3 80 chr3R 17935099 intron cpo + chr3R 17935139 intron cpo + chr3R 17935179 intron cpo + chr3R_6_17935001 chr3R_17935001 RAL-738 1937 chr3R 17960694 17960719 chr3R 17960875 17960904 5 182 9.0 15.0 12.0 0.4 210 chr3R 17960694 intron cpo + chr3R 17960799 intron cpo + chr3R 17960904 intron cpo + chr3R_5_17960001 chr3R_17960001 RAL-738 1938 chr3R 18032785 18032808 chr3R 18040453 18040476 opus 6 7664 0.0 0.0 0.0 6.0 7691 chr3R 18032785 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-738 1939 chr3R 18041753 18041767 chr3R 18041830 18041834 4 74 0.5 5.0 2.8 1.1 81 chr3R 18041753 intergenic not near genes chr3R 18041794 intergenic not near genes chr3R 18041834 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-738 1940 chr3R 18061576 18061613 chr3R 18063150 18063181 F-element 10 1569 3.0 4.5 3.8 2.1 1605 chr3R 18061576 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063181 intergenic not near genes chr3R_10_18060001 chr3R_18060001 RAL-738 1941 chr3R 18068002 18068023 chr3R 18068079 18068105 13 80 0.0 3.0 1.5 5.2 103 chr3R 18068002 intergenic not near genes chr3R 18068054 intergenic not near genes chr3R 18068105 intergenic not near genes chr3R_13_18065001 chr3R_18065001 RAL-738 1942 chr3R 18379643 18379657 chr3R 18379931 18379952 6 299 20.0 6.0 13.0 0.4 309 chr3R 18379643 intron CG7675 - chr3R 18379798 intron CG7675 - chr3R 18379952 intron CG7675 - chr3R_6_18375001 chr3R_18375001 RAL-738 1943 chr3R 18434022 18434040 chr3R 18434101 18434114 6 76 6.5 0.0 3.2 1.4 92 chr3R 18434022 intron fru - chr3R 18434068 intron fru - chr3R 18434114 intron fru - chr3R_6_18430001 chr3R_18430001 RAL-738 1944 chr3R 18473235 18473254 chr3R 18473322 18473341 6 87 0.0 1.0 0.5 4.0 106 chr3R 18473235 intron fru - chr3R 18473288 intron fru - chr3R 18473341 intron fru - chr3R_6_18470001 chr3R_18470001 RAL-738 1945 chr3R 18481037 18481070 chr3R 18481133 18481167 7 96 13.0 19.5 16.2 0.4 130 chr3R 18481037 intron fru - chr3R 18481102 intron fru - chr3R 18481167 intron fru - chr3R_7_18480001 chr3R_18480001 RAL-738 1946 chr3R 18501592 18501628 chr3R 18501673 18501709 19 79 6.0 9.5 7.8 2.2 117 chr3R 18501592 intron fru - chr3R 18501650 intron fru - chr3R 18501709 intron fru - chr3R_19_18500001 chr3R_18500001 RAL-738 1947 chr3R 18568563 18568580 chr3R 18568649 18568667 5 82 17.5 22.5 20.0 0.2 104 chr3R 18568563 intergenic not near genes chr3R 18568615 intergenic not near genes chr3R 18568667 intergenic not near genes chr3R_5_18565001 chr3R_18565001 RAL-738 1948 chr3R 18603943 18603967 chr3R 18604020 18604043 11 76 12.5 12.5 12.5 0.8 100 chr3R 18603943 intron,intron qin +,CG14304 - chr3R 18603993 intron,intron qin +,CG14304 - chr3R 18604043 intron,intron qin +,CG14304 - chr3R_11_18600001 chr3R_18600001 RAL-738 1949 chr3R 18606504 18606532 chr3R 18610736 18610764 F-element 13 4231 4.5 8.5 6.5 1.7 4260 chr3R 18606504 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610764 intron,intron qin +,CG14304 - chr3R_13_18605001 chr3R_18605001 RAL-738 1950 chr3R 18618266 18618297 chr3R 18618351 18618382 11 84 9.0 12.0 10.5 1.0 116 chr3R 18618266 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618382 intron,intron qin +,CG14304 - chr3R_11_18615001 chr3R_18615001 RAL-738 1951 chr3R 18681826 18681838 chr3R 18681920 18681932 4 94 7.0 9.5 8.2 0.4 106 chr3R 18681826 intron CG7708 + chr3R 18681879 intron CG7708 + chr3R 18681932 intron CG7708 + chr3R_4_18680001 chr3R_18680001 RAL-738 1952 chr3R 18695765 18695774 chr3R 18695849 18695858 4 84 12.0 11.0 11.5 0.3 93 chr3R 18695765 3` UTR CG34282 + chr3R 18695812 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-738 1953 chr3R 18703301 18703312 chr3R 18703392 18703400 4 90 9.5 8.5 9.0 0.4 99 chr3R 18703301 intergenic not near genes chr3R 18703350 intergenic not near genes chr3R 18703400 intergenic not near genes chr3R_4_18700001 chr3R_18700001 RAL-738 1954 chr3R 18766775 18766806 chr3R 18766853 18766884 12 74 2.5 6.0 4.2 2.3 109 chr3R 18766775 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_12_18765001 chr3R_18765001 RAL-738 1955 chr3R 18781698 18781726 chr3R 18781768 18781780 4 64 5.0 3.5 4.2 0.8 82 chr3R 18781698 intron CG7720 - chr3R 18781739 intron CG7720 - chr3R 18781780 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-738 1956 chr3R 18802128 18802156 chr3R 18802213 18802241 8 85 8.5 10.5 9.5 0.8 113 chr3R 18802128 3` UTR CG18208 - chr3R 18802184 3` UTR CG18208 - chr3R 18802241 3` UTR CG18208 - chr3R_8_18800001 chr3R_18800001 RAL-738 1957 chr3R 18812090 18812108 chr3R 18812156 18812176 13 71 6.0 5.5 5.8 1.9 86 chr3R 18812090 intron CG18208 - chr3R 18812133 intron CG18208 - chr3R 18812176 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-738 1958 chr3R 18817507 18817536 chr3R 18817605 18817633 16 95 2.5 1.5 2.0 5.3 126 chr3R 18817507 intron CG18208 - chr3R 18817570 intron CG18208 - chr3R 18817633 intron CG18208 - chr3R_16_18815001 chr3R_18815001 RAL-738 1959 chr3R 19013018 19013039 chr3R 19013102 19013113 4 82 12.0 11.0 11.5 0.3 95 chr3R 19013018 intron gukh + chr3R 19013066 intron gukh + chr3R 19013113 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-738 1960 chr3R 19033941 19033957 chr3R 19034004 19034011 6 68 5.5 3.5 4.5 1.1 70 chr3R 19033941 intron CG6026 + chr3R 19033976 intron CG6026 + chr3R 19034011 intron CG6026 + chr3R_6_19030001 chr3R_19030001 RAL-738 1961 chr3R 19117065 19117071 chr3R 19117209 19117215 4 142 12.5 0.0 6.2 0.6 150 chr3R 19117065 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117215 intron CG6040 + chr3R_4_19115001 chr3R_19115001 RAL-738 1962 chr3R 19139777 19139808 chr3R 19139872 19139903 5 95 9.5 8.5 9.0 0.5 126 chr3R 19139777 3` UTR Ppcs - chr3R 19139840 3` UTR Ppcs - chr3R 19139903 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-738 1963 chr3R 19193002 19193012 chr3R 19197290 19197316 F-element 6 4298 0.0 8.0 4.0 1.2 4314 chr3R 19193002 intron CG31475 + chr3R 19195159 intron CG31475 + chr3R 19197316 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-738 1964 chr3R 19290546 19290577 chr3R 19290622 19290633 10 68 7.5 8.5 8.0 1.1 87 chr3R 19290546 intergenic not near genes chr3R 19290590 intergenic not near genes chr3R 19290633 intergenic not near genes chr3R_10_19290001 chr3R_19290001 RAL-738 1965 chr3R 19291618 19291653 chr3R 19291909 19291936 6 285 13.5 13.0 13.2 0.4 318 chr3R 19291618 intergenic not near genes chr3R 19291777 intergenic not near genes chr3R 19291936 intergenic not near genes chr3R_6_19290001 chr3R_19290001 RAL-738 1966 chr3R 19340395 19340427 chr3R 19340472 19340504 12 77 2.5 4.0 3.2 2.9 109 chr3R 19340395 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340504 intergenic not near genes chr3R_12_19340001 chr3R_19340001 RAL-738 1967 chr3R 19344683 19344700 chr3R 19344818 19344834 7 135 2.0 3.0 2.5 2.0 151 chr3R 19344683 intergenic not near genes chr3R 19344758 intergenic not near genes chr3R 19344834 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-738 1968 chr3R 19418411 19418438 chr3R 19418503 19418530 9 91 5.0 8.5 6.8 1.2 119 chr3R 19418411 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418530 intron CG31221 + chr3R_9_19415001 chr3R_19415001 RAL-738 1969 chr3R 19435519 19435546 chr3R 19435795 19435817 9 275 15.0 14.5 14.8 0.6 298 chr3R 19435519 intron CG31221 + chr3R 19435668 intron CG31221 + chr3R 19435817 intron CG31221 + chr3R_9_19435001 chr3R_19435001 RAL-738 1970 chr3R 19490439 19490463 chr3R 19490527 19490552 7 89 12.5 17.0 14.8 0.4 113 chr3R 19490439 intron,exon Dys +,CG15025 - chr3R 19490496 intron,intron Dys +,CG15025 - chr3R 19490552 intron,intron Dys +,CG15025 - chr3R_7_19490001 chr3R_19490001 RAL-738 1971 chr3R 19512387 19512410 chr3R 19512563 19512586 8 174 0.5 9.0 4.8 1.4 199 chr3R 19512387 intron Dys + chr3R 19512486 intron Dys + chr3R 19512586 intron Dys + chr3R_8_19510001 chr3R_19510001 RAL-738 1972 chr3R 19602757 19602792 chr3R 19602835 19602865 8 77 10.0 9.0 9.5 0.8 108 chr3R 19602757 intergenic CG7333 + chr3R 19602811 intergenic CG7333 + chr3R 19602865 intergenic CG7333 + chr3R_8_19600001 chr3R_19600001 RAL-738 1973 chr3R 19604694 19604710 chr3R 19604814 19604843 6 130 10.5 5.0 7.8 0.7 149 chr3R 19604694 exon CG7342 + chr3R 19604768 intron CG7342 + chr3R 19604843 intron CG7342 + chr3R_6_19600001 chr3R_19600001 RAL-738 1974 chr3R 19716228 19716244 chr3R 19716303 19716314 5 75 3.5 0.5 2.0 1.7 86 chr3R 19716228 intergenic CG34286 - chr3R 19716271 intergenic CG34286 - chr3R 19716314 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-738 1975 chr3R 19824508 19824532 chr3R 19824602 19824626 6 94 7.5 8.5 8.0 0.7 118 chr3R 19824508 intron bnl - chr3R 19824567 intron bnl - chr3R 19824626 intron bnl - chr3R_6_19820001 chr3R_19820001 RAL-738 1976 chr3R 19827528 19827554 chr3R 19827614 19827640 5 86 1.5 4.0 2.8 1.3 112 chr3R 19827528 intron bnl - chr3R 19827584 intron bnl - chr3R 19827640 intron bnl - chr3R_5_19825001 chr3R_19825001 RAL-738 1977 chr3R 19865421 19865431 chr3R 19865545 19865570 4 135 15.0 10.5 12.8 0.3 149 chr3R 19865421 intron,3` UTR CG4686 +,CG4562 - chr3R 19865496 intron,3` UTR CG4686 +,CG4562 - chr3R 19865570 intron,3` UTR CG4686 +,CG4562 - chr3R_4_19865001 chr3R_19865001 RAL-738 1978 chr3R 19890242 19890256 chr3R 19890384 19890400 5 144 4.5 10.0 7.2 0.6 158 chr3R 19890242 intergenic CG4733 + chr3R 19890321 intergenic CG4733 + chr3R 19890400 intergenic CG4733 + chr3R_5_19890001 chr3R_19890001 RAL-738 1979 chr3R 19914011 19914041 chr3R 19914104 19914134 7 93 17.0 18.5 17.8 0.4 123 chr3R 19914011 3` UTR RhoGAP92B + chr3R 19914072 3` UTR RhoGAP92B + chr3R 19914134 3` UTR RhoGAP92B + chr3R_7_19910001 chr3R_19910001 RAL-738 1980 chr3R 19955348 19955366 chr3R 19955449 19955462 4 100 13.0 9.5 11.2 0.3 114 chr3R 19955348 intron Hs6st - chr3R 19955405 intron Hs6st - chr3R 19955462 intron Hs6st - chr3R_4_19955001 chr3R_19955001 RAL-738 1981 chr3R 20008822 20008856 chr3R 20008903 20008916 9 75 5.5 9.0 7.2 1.1 94 chr3R 20008822 intergenic MED25 +,Hs6st - chr3R 20008869 intergenic MED25 +,Hs6st - chr3R 20008916 intergenic MED25 +,Hs6st - chr3R_9_20005001 chr3R_20005001 RAL-738 1982 chr3R 20059464 20059496 chr3R 20059544 20059576 7 79 15.0 14.5 14.8 0.4 112 chr3R 20059464 intron CG4390 - chr3R 20059520 intron CG4390 - chr3R 20059576 exon CG4390 - chr3R_7_20055001 chr3R_20055001 RAL-738 1983 chr3R 20066550 20066581 chr3R 20066785 20066811 5 235 13.5 12.0 12.8 0.4 261 chr3R 20066550 intergenic not near genes chr3R 20066680 intergenic not near genes chr3R 20066811 intergenic not near genes chr3R_5_20065001 chr3R_20065001 RAL-738 1984 chr3R 20109542 20109569 chr3R 20114748 20114775 copia 14 5204 1.5 5.5 3.5 3.1 5233 chr3R 20109542 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114775 intergenic CG10887 + chr3R_14_20110001 chr3R_20110001 RAL-738 1985 chr3R 20156703 20156723 chr3R 20165858 20165893 roo 7 9163 10.5 5.5 8.0 0.8 9190 chr3R 20156703 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-738 1986 chr3R 20197790 20197808 chr3R 20197862 20197889 8 80 4.0 8.5 6.2 1.1 99 chr3R 20197790 intergenic not near genes chr3R 20197840 intergenic not near genes chr3R 20197889 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-738 1987 chr3R 20205564 20205596 chr3R 20205686 20205718 7 122 2.0 4.5 3.2 1.7 154 chr3R 20205564 intron Nlg4 + chr3R 20205641 intron Nlg4 + chr3R 20205718 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-738 1988 chr3R 20225690 20225696 chr3R 20225769 20225775 4 79 8.0 5.5 6.8 0.5 85 chr3R 20225690 intron Nlg4 + chr3R 20225732 intron Nlg4 + chr3R 20225775 intron Nlg4 + chr3R_4_20225001 chr3R_20225001 RAL-738 1989 chr3R 20228517 20228554 chr3R 20228748 20228770 8 223 13.5 10.0 11.8 0.6 253 chr3R 20228517 intron Nlg4 + chr3R 20228644 intron Nlg4 + chr3R 20228770 intron Nlg4 + chr3R_8_20225001 chr3R_20225001 RAL-738 1990 chr3R 20231442 20231468 chr3R 20231621 20231647 7 183 22.5 21.0 21.8 0.3 205 chr3R 20231442 intron Nlg4 + chr3R 20231544 intron Nlg4 + chr3R 20231647 intron Nlg4 + chr3R_7_20230001 chr3R_20230001 RAL-738 1991 chr3R 20245278 20245304 chr3R 20248888 20248914 F-element 6 3609 1.5 0.0 0.8 3.3 3636 chr3R 20245278 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248914 intergenic not near genes chr3R_6_20245001 chr3R_20245001 RAL-738 1992 chr3R 20252222 20252242 chr3R 20252300 20252320 4 78 16.0 16.0 16.0 0.2 98 chr3R 20252222 intergenic not near genes chr3R 20252271 intergenic cic + chr3R 20252320 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-738 1993 chr3R 20256847 20256871 chr3R 20256925 20256949 6 78 0.0 5.0 2.5 1.7 102 chr3R 20256847 intron cic + chr3R 20256898 intron cic + chr3R 20256949 intron cic + chr3R_6_20255001 chr3R_20255001 RAL-738 1994 chr3R 20266520 20266549 chr3R 20272990 20273020 Burdock 12 6470 5.0 5.0 5.0 2.0 6500 chr3R 20266520 intron cic + chr3R 20269770 intron cic + chr3R 20273020 intron cic + chr3R_12_20265001 chr3R_20265001 RAL-738 1995 chr3R 20282282 20282303 chr3R 20282358 20282366 5 73 8.5 10.0 9.2 0.5 84 chr3R 20282282 intron cic + chr3R 20282324 intron cic + chr3R 20282366 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-738 1996 chr3R 20308187 20308206 chr3R 20308275 20308294 12 88 3.0 0.0 1.5 4.8 107 chr3R 20308187 intergenic not near genes chr3R 20308240 intergenic not near genes chr3R 20308294 intergenic not near genes chr3R_12_20305001 chr3R_20305001 RAL-738 1997 chr3R 20330996 20331032 chr3R 20331482 20331517 roo 16 486 3.0 4.5 3.8 3.3 521 chr3R 20330996 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331517 intergenic not near genes chr3R_16_20330001 chr3R_20330001 RAL-738 1998 chr3R 20343119 20343131 chr3R 20343298 20343301 INE-1 8 176 12.5 1.0 6.8 1.0 182 chr3R 20343119 exon Ir92a + chr3R 20343210 intron Ir92a + chr3R 20343301 intron Ir92a + chr3R_8_20340001 chr3R_20340001 RAL-738 1999 chr3R 20344219 20344248 chr3R 20344304 20344333 7 85 7.5 9.0 8.2 0.8 114 chr3R 20344219 intergenic Ir92a + chr3R 20344276 intergenic Ir92a + chr3R 20344333 intergenic Ir92a + chr3R_7_20340001 chr3R_20340001 RAL-738 2000 chr3R 20349646 20349669 chr3R 20350400 20350414 4 751 6.0 11.0 8.5 0.4 768 chr3R 20349646 intergenic not near genes chr3R 20350030 intergenic not near genes chr3R 20350414 intergenic not near genes chr3R_4_20350001 chr3R_20350001 RAL-738 2001 chr3R 20374460 20374480 chr3R 20374540 20374560 6 78 15.0 9.5 12.2 0.5 100 chr3R 20374460 intergenic not near genes chr3R 20374510 intergenic not near genes chr3R 20374560 intergenic not near genes chr3R_6_20370001 chr3R_20370001 RAL-738 2002 chr3R 20434849 20434855 chr3R 20435034 20435040 4 185 4.0 0.5 2.2 1.2 191 chr3R 20434849 intron Gfrl - chr3R 20434944 intron Gfrl - chr3R 20435040 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-738 2003 chr3R 20458012 20458045 chr3R 20458101 20458113 4 84 14.5 12.5 13.5 0.3 101 chr3R 20458012 intron Gfrl - chr3R 20458062 intron Gfrl - chr3R 20458113 intron Gfrl - chr3R_4_20455001 chr3R_20455001 RAL-738 2004 chr3R 20469299 20469475 chr3R 20469398 20469558 6 96 1.0 0.5 0.8 3.3 259 chr3R 20469299 intron Gfrl - chr3R 20469428 intron Gfrl - chr3R 20469558 intron Gfrl - chr3R_6_20465001 chr3R_20465001 RAL-738 2005 chr3R 20489019 20489032 chr3R 20489095 20489108 5 76 12.5 6.5 9.5 0.5 89 chr3R 20489019 intergenic not near genes chr3R 20489064 intergenic not near genes chr3R 20489108 intergenic not near genes chr3R_5_20485001 chr3R_20485001 RAL-738 2006 chr3R 20506586 20506616 chr3R 20507389 20507419 BS 11 800 5.0 4.0 4.5 2.0 833 chr3R 20506586 intergenic Or92a + chr3R 20507002 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_11_20505001 chr3R_20505001 RAL-738 2007 chr3R 20513009 20513030 chr3R 20515712 20515733 opus 4 2703 3.5 1.0 2.2 1.2 2724 chr3R 20513009 intergenic not near genes chr3R 20514371 intergenic not near genes chr3R 20515733 intergenic not near genes chr3R_4_20510001 chr3R_20510001 RAL-738 2008 chr3R 20595619 20595639 chr3R 20595816 20595847 4 201 4.5 7.0 5.8 0.6 228 chr3R 20595619 intron bon + chr3R 20595733 intron bon + chr3R 20595847 intron bon + chr3R_4_20595001 chr3R_20595001 RAL-738 2009 chr3R 20684232 20684244 chr3R 20684316 20684328 5 84 7.0 14.0 10.5 0.4 96 chr3R 20684232 intergenic not near genes chr3R 20684280 intergenic not near genes chr3R 20684328 intergenic not near genes chr3R_5_20680001 chr3R_20680001 RAL-738 2010 chr3R 20703480 20703515 chr3R 20703874 20703909 9 394 3.5 3.5 3.5 2.0 429 chr3R 20703480 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703909 intron Oamb - chr3R_9_20700001 chr3R_20700001 RAL-738 2011 chr3R 20722854 20722886 chr3R 20722981 20722993 12 124 5.0 2.5 3.8 2.5 139 chr3R 20722854 intergenic not near genes chr3R 20722924 intergenic not near genes chr3R 20722993 intergenic not near genes chr3R_12_20720001 chr3R_20720001 RAL-738 2012 chr3R 20730934 20731061 chr3R 20731034 20731149 7 90 0.0 0.5 0.2 5.8 215 chr3R 20730934 intergenic not near genes chr3R 20731042 intergenic not near genes chr3R 20731149 intergenic CG31205 + chr3R_7_20730001 chr3R_20730001 RAL-738 2013 chr3R 20733774 20733797 chr3R 20733854 20733869 5 83 22.0 20.5 21.2 0.2 95 chr3R 20733774 intergenic not near genes chr3R 20733822 intergenic not near genes chr3R 20733869 intergenic not near genes chr3R_5_20730001 chr3R_20730001 RAL-738 2014 chr3R 20735013 20735046 chr3R 20735092 20735113 7 72 15.0 10.0 12.5 0.5 100 chr3R 20735013 intergenic not near genes chr3R 20735063 intergenic not near genes chr3R 20735113 intergenic not near genes chr3R_7_20735001 chr3R_20735001 RAL-738 2015 chr3R 20767502 20767539 chr3R 20767594 20767635 9 94 5.0 4.5 4.8 1.6 133 chr3R 20767502 intron Syp + chr3R 20767568 intron Syp + chr3R 20767635 intron Syp + chr3R_9_20765001 chr3R_20765001 RAL-738 2016 chr3R 20771706 20771730 chr3R 20771787 20771798 5 77 4.0 9.0 6.5 0.7 92 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771798 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-738 2017 chr3R 20824818 20824854 chr3R 20824894 20824930 8 76 13.0 15.0 14.0 0.5 112 chr3R 20824818 3` UTR AdSS - chr3R 20824874 3` UTR AdSS - chr3R 20824930 3` UTR AdSS - chr3R_8_20820001 chr3R_20820001 RAL-738 2018 chr3R 20850087 20850113 chr3R 20850171 20850198 4 85 1.5 1.0 1.2 1.8 111 chr3R 20850087 intergenic RpS30 + chr3R 20850142 intergenic RpS30 + chr3R 20850198 intergenic RpS30 + chr3R_4_20850001 chr3R_20850001 RAL-738 2019 chr3R 20854498 20854513 chr3R 20859288 20859303 Doc 6 4789 15.0 10.0 12.5 0.4 4805 chr3R 20854498 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859303 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-738 2020 chr3R 20874522 20874548 chr3R 20874607 20874633 8 85 16.0 16.0 16.0 0.5 111 chr3R 20874522 3` UTR TotB + chr3R 20874578 intergenic TotB + chr3R 20874633 intergenic TotB + chr3R_8_20870001 chr3R_20870001 RAL-738 2021 chr3R 20958394 20958420 chr3R 20958495 20958519 6 98 9.0 20.5 14.8 0.4 125 chr3R 20958394 intron Atpalpha + chr3R 20958456 intron Atpalpha + chr3R 20958519 intron Atpalpha + chr3R_6_20955001 chr3R_20955001 RAL-738 2022 chr3R 20966133 20966157 chr3R 20966216 20966240 6 83 11.0 13.5 12.2 0.5 107 chr3R 20966133 intron Atpalpha + chr3R 20966186 intron Atpalpha + chr3R 20966240 intron Atpalpha + chr3R_6_20965001 chr3R_20965001 RAL-738 2023 chr3R 21014011 21014045 chr3R 21014089 21014123 14 76 9.5 7.0 8.2 1.5 112 chr3R 21014011 3` UTR Calx + chr3R 21014067 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_14_21010001 chr3R_21010001 RAL-738 2024 chr3R 21129834 21129995 chr3R 21129923 21130071 6 87 5.5 2.0 3.8 1.2 237 chr3R 21129834 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129952 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130071 intergenic Ice2 +,Obp93a -,CG5793 + chr3R_6_21125001 chr3R_21125001 RAL-738 2025 chr3R 21141687 21141694 chr3R 21150156 21150166 Tirant 5 8474 10.0 5.5 7.8 0.6 8479 chr3R 21141687 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150166 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-738 2026 chr3R 21141695 21141704 chr3R 21150155 21150183 Tirant 4 8472 5.0 5.5 5.2 0.6 8488 chr3R 21141695 intron SNF4Agamma + chr3R 21145939 intron SNF4Agamma + chr3R 21150183 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-738 2027 chr3R 21154552 21154586 chr3R 21154757 21154801 8 213 14.5 9.5 12.0 0.6 249 chr3R 21154552 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154801 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-738 2028 chr3R 21163248 21163279 chr3R 21163326 21163357 18 77 4.0 5.0 4.5 3.3 109 chr3R 21163248 intron SNF4Agamma + chr3R 21163302 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_18_21160001 chr3R_21160001 RAL-738 2029 chr3R 21239808 21239948 chr3R 21239902 21240018 5 83 2.0 0.0 1.0 2.5 210 chr3R 21239808 intergenic not near genes chr3R 21239913 intergenic not near genes chr3R 21240018 intergenic not near genes chr3R_5_21235001 chr3R_21235001 RAL-738 2030 chr3R 21287658 21287677 chr3R 21288000 21288006 6 340 9.0 10.0 9.5 0.6 348 chr3R 21287658 intron SIFaR - chr3R 21287832 intron SIFaR - chr3R 21288006 intron SIFaR - chr3R_6_21285001 chr3R_21285001 RAL-738 2031 chr3R 21321496 21321529 chr3R 21321592 21321625 7 95 13.0 13.5 13.2 0.5 129 chr3R 21321496 intron CG16791 - chr3R 21321560 intron CG16791 - chr3R 21321625 intron CG16791 - chr3R_7_21320001 chr3R_21320001 RAL-738 2032 chr3R 21330812 21330827 chr3R 21330902 21330917 7 89 12.0 5.5 8.8 0.7 105 chr3R 21330812 intron CG16791 - chr3R 21330864 intron CG16791 - chr3R 21330917 intron CG16791 - chr3R_7_21330001 chr3R_21330001 RAL-738 2033 chr3R 21330831 21330898 chr3R 21330901 21330989 8 88 6.5 5.5 6.0 1.1 158 chr3R 21330831 intron CG16791 - chr3R 21330910 intron CG16791 - chr3R 21330989 intron CG16791 - chr3R_8_21330001 chr3R_21330001 RAL-738 2034 chr3R 21464406 21464424 chr3R 21464492 21464510 9 85 1.5 0.0 0.8 5.0 104 chr3R 21464406 intergenic not near genes chr3R 21464458 intergenic not near genes chr3R 21464510 intergenic not near genes chr3R_9_21460001 chr3R_21460001 RAL-738 2035 chr3R 21472019 21472036 chr3R 21472091 21472100 8 76 4.0 6.5 5.2 1.3 81 chr3R 21472019 intergenic not near genes chr3R 21472060 intergenic not near genes chr3R 21472100 intergenic not near genes chr3R_8_21470001 chr3R_21470001 RAL-738 2036 chr3R 21494683 21494714 chr3R 21494763 21494794 5 80 17.0 20.0 18.5 0.3 111 chr3R 21494683 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494794 intergenic not near genes chr3R_5_21490001 chr3R_21490001 RAL-738 2037 chr3R 21502960 21502986 chr3R 21503106 21503132 9 145 19.0 12.5 15.8 0.5 172 chr3R 21502960 intron C15 + chr3R 21503046 intron C15 + chr3R 21503132 intron C15 + chr3R_9_21500001 chr3R_21500001 RAL-738 2038 chr3R 21506902 21506908 chr3R 21506982 21506988 4 80 8.5 12.5 10.5 0.3 86 chr3R 21506902 intron C15 + chr3R 21506945 intron C15 + chr3R 21506988 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-738 2039 chr3R 21518255 21518269 chr3R 21518339 21518353 8 84 14.0 16.5 15.2 0.5 98 chr3R 21518255 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_8_21515001 chr3R_21515001 RAL-738 2040 chr3R 21519997 21520152 chr3R 21520098 21520223 8 88 11.0 10.0 10.5 0.7 226 chr3R 21519997 intergenic not near genes chr3R 21520110 intergenic not near genes chr3R 21520223 intergenic not near genes chr3R_8_21520001 chr3R_21520001 RAL-738 2041 chr3R 21609025 21609041 chr3R 21611642 21611674 NOF 4 2626 3.5 8.5 6.0 0.6 2649 chr3R 21609025 intron InR - chr3R 21610350 intron InR - chr3R 21611674 intron InR - chr3R_4_21610001 chr3R_21610001 RAL-738 2042 chr3R 21624103 21624121 chr3R 21624197 21624215 5 94 3.5 4.0 3.8 1.0 112 chr3R 21624103 intron E2f - chr3R 21624159 intron E2f - chr3R 21624215 intron E2f - chr3R_5_21620001 chr3R_21620001 RAL-738 2043 chr3R 21631134 21631160 chr3R 21631529 21631565 7 397 13.0 14.0 13.5 0.5 431 chr3R 21631134 intron E2f - chr3R 21631350 intron E2f - chr3R 21631565 intron E2f - chr3R_7_21630001 chr3R_21630001 RAL-738 2044 chr3R 21633243 21633256 chr3R 21633489 21633502 4 246 11.0 6.0 8.5 0.4 259 chr3R 21633243 intron E2f - chr3R 21633372 intron E2f - chr3R 21633502 intron E2f - chr3R_4_21630001 chr3R_21630001 RAL-738 2045 chr3R 21644670 21644682 chr3R 21644836 21644865 6 176 18.5 18.0 18.2 0.3 195 chr3R 21644670 intron E2f - chr3R 21644768 intron E2f - chr3R 21644865 intron E2f - chr3R_6_21640001 chr3R_21640001 RAL-738 2046 chr3R 21725672 21725691 chr3R 21725808 21725827 4 136 0.0 7.5 3.8 0.8 155 chr3R 21725672 intergenic not near genes chr3R 21725750 intergenic not near genes chr3R 21725827 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-738 2047 chr3R 21761120 21761154 chr3R 21768512 21768545 mdg1 9 7389 4.5 4.5 4.5 1.6 7425 chr3R 21761120 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768545 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-738 2048 chr3R 21790967 21790974 chr3R 21791051 21791059 4 83 11.5 7.5 9.5 0.4 92 chr3R 21790967 intron CASK - chr3R 21791013 intron CASK - chr3R 21791059 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-738 2049 chr3R 21836541 21836566 chr3R 21836633 21836658 4 90 9.5 7.5 8.5 0.4 117 chr3R 21836541 intergenic not near genes chr3R 21836600 intergenic not near genes chr3R 21836658 intergenic not near genes chr3R_4_21835001 chr3R_21835001 RAL-738 2050 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 30.0 36.5 33.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-738 2051 chr3R 9620955 9620956 chr3R 21907534 21907534 4 12286578 29.0 36.5 32.8 0.1 12286579 chr3R 9620955 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-738 2052 chr3R 21337429 21337429 chr3R 21907534 21907534 4 570105 9.0 36.5 22.8 0.2 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-738 2053 chr3R 21907534 21907534 chr3R 28831801 28831805 26 6924268 41.0 29.0 35.0 0.7 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-738 2054 chr3R 9620955 9620956 chr3R 21907535 21907535 5 12286579 29.0 36.5 32.8 0.1 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-738 2055 chr3R 21907535 21907535 chr3R 28831801 28831803 37 6924267 41.0 29.0 35.0 1.0 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-738 2056 chr3R 8339247 8339247 chr3R 21907536 21907536 4 13568289 30.0 37.0 33.5 0.1 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-738 2057 chr3R 21907536 21907536 chr3R 28831801 28831805 37 6924266 41.0 29.0 35.0 1.0 6924269 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-738 2058 chr3R 21924034 21924044 chr3R 21924100 21924128 4 82 17.5 15.0 16.2 0.2 94 chr3R 21924034 intergenic not near genes chr3R 21924081 intergenic not near genes chr3R 21924128 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-738 2059 chr3R 21952143 21952170 chr3R 21952228 21952255 9 84 9.5 11.0 10.2 0.8 112 chr3R 21952143 intron Eip93F + chr3R 21952199 intron Eip93F + chr3R 21952255 intron Eip93F + chr3R_9_21950001 chr3R_21950001 RAL-738 2060 chr3R 21958603 21958636 chr3R 21958692 21958726 9 90 11.5 10.0 10.8 0.8 123 chr3R 21958603 intron Eip93F + chr3R 21958664 intron Eip93F + chr3R 21958726 intron Eip93F + chr3R_9_21955001 chr3R_21955001 RAL-738 2061 chr3R 21960904 21960922 chr3R 21961094 21961112 6 190 10.5 7.5 9.0 0.6 208 chr3R 21960904 exon Eip93F + chr3R 21961008 intron Eip93F + chr3R 21961112 intron Eip93F + chr3R_6_21960001 chr3R_21960001 RAL-738 2062 chr3R 21985234 21985257 chr3R 21985339 21985347 4 101 5.0 3.5 4.2 0.8 113 chr3R 21985234 intron Eip93F + chr3R 21985290 intron Eip93F + chr3R 21985347 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-738 2063 chr3R 22055558 22055589 chr3R 22055747 22055761 11 185 14.5 11.5 13.0 0.8 203 chr3R 22055558 intron how + chr3R 22055660 intron how + chr3R 22055761 intron how + chr3R_11_22055001 chr3R_22055001 RAL-738 2064 chr3R 22116414 22116431 chr3R 22116781 22116798 5 367 15.0 4.5 9.8 0.5 384 chr3R 22116414 exon Ir94b - chr3R 22116606 exon Ir94b - chr3R 22116798 exon Ir94b - chr3R_5_22115001 chr3R_22115001 RAL-738 2065 chr3R 22117414 22117444 chr3R 22117490 22117520 10 76 3.5 6.5 5.0 1.7 106 chr3R 22117414 intergenic Ir94b -,Ir94c - chr3R 22117467 intergenic Ir94c -,Ir94b - chr3R 22117520 intergenic Ir94c -,Ir94b - chr3R_10_22115001 chr3R_22115001 RAL-738 2066 chr3R 22234682 22234715 chr3R 22236001 22236005 pogo 9 1314 9.0 11.5 10.2 0.8 1323 chr3R 22234682 intron SKIP + chr3R 22235344 intron SKIP + chr3R 22236005 intron SKIP + chr3R_9_22235001 chr3R_22235001 RAL-738 2067 chr3R 22239492 22239507 chr3R 22248552 22248567 roo 5 9060 9.5 5.5 7.5 0.6 9075 chr3R 22239492 intron SKIP + chr3R 22244030 intron SKIP + chr3R 22248567 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-738 2068 chr3R 22292472 22292506 chr3R 22292552 22292586 9 80 14.5 13.0 13.8 0.6 114 chr3R 22292472 intron SKIP + chr3R 22292529 intron SKIP + chr3R 22292586 intron SKIP + chr3R_9_22290001 chr3R_22290001 RAL-738 2069 chr3R 22351637 22351663 chr3R 22351716 22351728 5 76 22.0 18.0 20.0 0.2 91 chr3R 22351637 intergenic rdhB + chr3R 22351682 intergenic rdhB + chr3R 22351728 5` UTR rdhB + chr3R_5_22350001 chr3R_22350001 RAL-738 2070 chr3R 22421676 22421696 chr3R 22421759 22421779 4 82 10.5 14.5 12.5 0.3 103 chr3R 22421676 intron mats + chr3R 22421728 intron mats + chr3R 22421779 intron mats + chr3R_4_22420001 chr3R_22420001 RAL-738 2071 chr3R 22428586 22428606 chr3R 22428662 22428682 8 76 15.5 14.5 15.0 0.5 96 chr3R 22428586 intron CG13847 - chr3R 22428634 intron CG13847 - chr3R 22428682 intron CG13847 - chr3R_8_22425001 chr3R_22425001 RAL-738 2072 chr3R 22450541 22450579 chr3R 22453181 22453219 NOF 16 2634 4.0 13.5 8.8 1.6 2678 chr3R 22450541 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_16_22450001 chr3R_22450001 RAL-738 2073 chr3R 22492381 22492415 chr3R 22492462 22492471 9 71 16.5 15.5 16.0 0.5 90 chr3R 22492381 3` UTR CG7045 + chr3R 22492426 intergenic CG7045 + chr3R 22492471 intergenic CG7045 +,CG7046 + chr3R_9_22490001 chr3R_22490001 RAL-738 2074 chr3R 22520764 22520791 chr3R 22520851 22520878 8 87 8.5 8.0 8.2 0.9 114 chr3R 22520764 intron CG5346 - chr3R 22520821 intron CG5346 - chr3R 22520878 intron CG5346 - chr3R_8_22520001 chr3R_22520001 RAL-738 2075 chr3R 22538464 22538474 chr3R 22538534 22538559 5 82 3.0 7.0 5.0 0.8 95 chr3R 22538464 intron CG5326 - chr3R 22538512 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-738 2076 chr3R 22646932 22646942 chr3R 22647009 22647030 4 85 7.5 0.0 3.8 0.8 98 chr3R 22646932 intron wake + chr3R 22646981 intron wake + chr3R 22647030 intron wake + chr3R_4_22645001 chr3R_22645001 RAL-738 2077 chr3R 22769099 22769124 chr3R 22769176 22769201 4 77 20.0 22.0 21.0 0.2 102 chr3R 22769099 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769150 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769201 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_4_22765001 chr3R_22765001 RAL-738 2078 chr3R 22797758 22797937 chr3R 22797843 22798017 32 87 0.5 1.0 0.8 17.8 259 chr3R 22797758 intergenic not near genes chr3R 22797888 intergenic not near genes chr3R 22798017 intergenic not near genes chr3R_32_22795001 chr3R_22795001 RAL-738 2079 chr3R 22860152 22860174 chr3R 22860244 22860266 13 91 2.0 0.0 1.0 6.5 114 chr3R 22860152 intergenic not near genes chr3R 22860209 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_13_22860001 chr3R_22860001 RAL-738 2080 chr3R 22881194 22881228 chr3R 22884899 22884934 Doc 13 3702 2.5 1.5 2.0 4.3 3740 chr3R 22881194 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884934 intergenic not near genes chr3R_13_22880001 chr3R_22880001 RAL-738 2081 chr3R 22927875 22927904 chr3R 22927969 22927996 7 90 17.5 23.5 20.5 0.3 121 chr3R 22927875 intron klg + chr3R 22927936 intron klg + chr3R 22927996 intron klg + chr3R_7_22925001 chr3R_22925001 RAL-738 2082 chr3R 22945185 22945217 chr3R 22945267 22945279 6 79 13.5 11.0 12.2 0.5 94 chr3R 22945185 intron klg + chr3R 22945232 intron klg + chr3R 22945279 intron klg + chr3R_6_22945001 chr3R_22945001 RAL-738 2083 chr3R 23002976 23002997 chr3R 23003043 23003051 6 64 4.0 2.5 3.2 1.4 75 chr3R 23002976 exon CG34375 - chr3R 23003014 intron CG34375 - chr3R 23003051 intron CG34375 - chr3R_6_23000001 chr3R_23000001 RAL-738 2084 chr3R 23016205 23016227 chr3R 23016276 23016297 8 72 10.5 8.5 9.5 0.8 92 chr3R 23016205 intergenic not near genes chr3R 23016251 intergenic not near genes chr3R 23016297 intergenic not near genes chr3R_8_23015001 chr3R_23015001 RAL-738 2085 chr3R 23100154 23100433 chr3R 23100241 23100513 9 82 22.5 13.0 17.8 0.5 359 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100334 intron,exon CG13830 -,CG6738 + chr3R 23100513 intron,exon CG13830 -,CG6738 + chr3R_9_23100001 chr3R_23100001 RAL-738 2086 chr3R 23100657 23100669 chr3R 23101168 23101177 4 510 10.5 9.5 10.0 0.4 520 chr3R 23100657 intron,exon CG13830 -,CG6738 + chr3R 23100917 intron,exon CG13830 -,CG6738 + chr3R 23101177 intron CG13830 - chr3R_4_23100001 chr3R_23100001 RAL-738 2087 chr3R 23180183 23180213 chr3R 23180266 23180280 10 80 24.0 22.5 23.2 0.4 97 chr3R 23180183 intron Irk1 + chr3R 23180232 intron Irk1 + chr3R 23180280 intron Irk1 + chr3R_10_23180001 chr3R_23180001 RAL-738 2088 chr3R 23182684 23182701 chr3R 23182767 23182784 4 83 18.5 17.5 18.0 0.2 100 chr3R 23182684 intron Irk1 + chr3R 23182734 intron Irk1 + chr3R 23182784 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-738 2089 chr3R 23223157 23223169 chr3R 23223364 23223377 4 208 15.0 8.0 11.5 0.3 220 chr3R 23223157 intron cnc - chr3R 23223267 intron cnc - chr3R 23223377 intron cnc - chr3R_4_23220001 chr3R_23220001 RAL-738 2090 chr3R 23277347 23277361 chr3R 23277437 23277448 5 89 13.0 9.0 11.0 0.4 101 chr3R 23277347 intron orb - chr3R 23277398 intron orb - chr3R 23277448 intron orb - chr3R_5_23275001 chr3R_23275001 RAL-738 2091 chr3R 23311700 23311709 chr3R 23311771 23311789 4 84 14.0 10.0 12.0 0.3 89 chr3R 23311700 intron pnt - chr3R 23311744 intron pnt - chr3R 23311789 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-738 2092 chr3R 23335448 23335462 chr3R 23335511 23335529 5 71 13.5 11.5 12.5 0.4 81 chr3R 23335448 intron pnt - chr3R 23335488 intron pnt - chr3R 23335529 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-738 2093 chr3R 23342639 23342664 chr3R 23342774 23342799 7 134 10.0 12.5 11.2 0.6 160 chr3R 23342639 intron pnt - chr3R 23342719 intron pnt - chr3R 23342799 intron pnt - chr3R_7_23340001 chr3R_23340001 RAL-738 2094 chr3R 23453680 23453708 chr3R 23453759 23453768 9 77 11.5 11.0 11.2 0.7 88 chr3R 23453680 intron CG4374 - chr3R 23453724 intron CG4374 - chr3R 23453768 intron CG4374 - chr3R_9_23450001 chr3R_23450001 RAL-738 2095 chr3R 23558405 23558427 chr3R 23560186 23560208 Bari1 7 1781 5.5 4.5 5.0 1.2 1803 chr3R 23558405 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-738 2096 chr3R 23564441 23564467 chr3R 23564585 23564611 4 144 16.5 10.0 13.2 0.3 170 chr3R 23564441 intron beat-IV + chr3R 23564526 intron beat-IV + chr3R 23564611 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-738 2097 chr3R 23684706 23684725 chr3R 23685182 23685196 roo 6 479 6.5 10.5 8.5 0.6 490 chr3R 23684706 intron CG18754 + chr3R 23684951 intron CG18754 + chr3R 23685196 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-738 2098 chr3R 23688473 23688502 chr3R 23688564 23688566 10 86 5.5 9.5 7.5 1.2 93 chr3R 23688473 intergenic SPE + chr3R 23688520 intergenic SPE +,CG10254 - chr3R 23688566 intergenic SPE +,CG10254 - chr3R_10_23685001 chr3R_23685001 RAL-738 2099 chr3R 23820635 23820668 chr3R 23820719 23820752 4 84 10.0 14.0 12.0 0.3 117 chr3R 23820635 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820752 5` UTR CG34355 + chr3R_4_23820001 chr3R_23820001 RAL-738 2100 chr3R 23835405 23835432 chr3R 23844555 23844582 roo 15 9150 5.0 3.5 4.2 2.9 9177 chr3R 23835405 intron CG34355 + chr3R 23839994 intron CG34355 + chr3R 23844582 intron CG34355 + chr3R_15_23835001 chr3R_23835001 RAL-738 2101 chr3R 23938680 23938697 chr3R 23939112 23939115 4 427 20.5 11.0 15.8 0.2 435 chr3R 23938680 intron Gdh - chr3R 23938898 intron Gdh - chr3R 23939115 intron Gdh - chr3R_4_23935001 chr3R_23935001 RAL-738 2102 chr3R 23939220 23939237 chr3R 23939291 23939323 7 84 9.0 10.0 9.5 0.7 103 chr3R 23939220 intron Gdh - chr3R 23939272 intron Gdh - chr3R 23939323 intron Gdh - chr3R_7_23935001 chr3R_23935001 RAL-738 2103 chr3R 23944922 23944936 chr3R 23944997 23945019 6 83 7.0 7.5 7.2 0.7 97 chr3R 23944922 intron CG12268 - chr3R 23944970 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-738 2104 chr3R 23967556 23967584 chr3R 23967636 23967663 8 77 8.5 13.5 11.0 0.7 107 chr3R 23967556 intron CG31140 + chr3R 23967610 intron CG31140 + chr3R 23967663 intron CG31140 + chr3R_8_23965001 chr3R_23965001 RAL-738 2105 chr3R 23967939 23967966 chr3R 23968587 23968604 4 641 29.0 30.5 29.8 0.1 665 chr3R 23967939 intron CG31140 + chr3R 23968272 intron CG31140 + chr3R 23968604 intron CG31140 + chr3R_4_23965001 chr3R_23965001 RAL-738 2106 chr3R 24024988 24025007 chr3R 24025080 24025099 4 92 10.5 14.5 12.5 0.3 111 chr3R 24024988 intron KrT95D - chr3R 24025044 intron KrT95D - chr3R 24025099 intron KrT95D - chr3R_4_24025001 chr3R_24025001 RAL-738 2107 chr3R 24072088 24072096 chr3R 24072524 24072534 jockey 6 438 20.5 11.5 16.0 0.4 446 chr3R 24072088 intron 4EHP - chr3R 24072311 intron 4EHP - chr3R 24072534 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-738 2108 chr3R 24072101 24072116 chr3R 24072522 24072554 jockey 8 427 11.5 11.0 11.2 0.7 453 chr3R 24072101 intron 4EHP - chr3R 24072328 intron 4EHP - chr3R 24072554 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-738 2109 chr3R 24076914 24076945 chr3R 24078381 24078400 hobo 10 1461 3.0 4.0 3.5 2.2 1486 chr3R 24076914 intron 4EHP - chr3R 24077657 intron 4EHP - chr3R 24078400 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-738 2110 chr3R 24080618 24080636 chr3R 24080717 24080735 4 99 3.0 9.0 6.0 0.6 117 chr3R 24080618 intron 4EHP - chr3R 24080676 intron 4EHP - chr3R 24080735 intron 4EHP - chr3R_4_24080001 chr3R_24080001 RAL-738 2111 chr3R 24100458 24100608 chr3R 24100553 24100832 17 148 11.0 6.0 8.5 1.8 374 chr3R 24100458 intron 4EHP - chr3R 24100645 intron 4EHP - chr3R 24100832 intron 4EHP - chr3R_17_24100001 chr3R_24100001 RAL-738 2112 chr3R 24106641 24106672 chr3R 24106724 24106755 9 83 13.5 15.0 14.2 0.6 114 chr3R 24106641 intron 4EHP - chr3R 24106698 intron 4EHP - chr3R 24106755 intron 4EHP - chr3R_9_24105001 chr3R_24105001 RAL-738 2113 chr3R 24122310 24122313 chr3R 24122383 24122391 4 79 13.5 9.0 11.2 0.3 81 chr3R 24122310 exon Rootletin + chr3R 24122350 intron Rootletin + chr3R 24122391 intron Rootletin + chr3R_4_24120001 chr3R_24120001 RAL-738 2114 chr3R 24195069 24195077 chr3R 24195181 24195211 8 115 35.5 41.5 38.5 0.2 142 chr3R 24195069 intron CG6204 + chr3R 24195140 exon CG6204 + chr3R 24195211 exon CG6204 + chr3R_8_24195001 chr3R_24195001 RAL-738 2115 chr3R 24207219 24207246 chr3R 24212291 24212317 flea 12 5074 7.0 9.0 8.0 1.3 5098 chr3R 24207219 intron twin - chr3R 24209768 intron twin - chr3R 24212317 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-738 2116 chr3R 24431600 24431627 chr3R 24431679 24431706 9 79 3.5 3.0 3.2 2.1 106 chr3R 24431600 intron nAChRalpha1 - chr3R 24431653 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-738 2117 chr3R 24433489 24433504 chr3R 24433563 24433583 4 78 12.0 11.0 11.5 0.3 94 chr3R 24433489 intron nAChRalpha1 - chr3R 24433536 intron nAChRalpha1 - chr3R 24433583 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-738 2118 chr3R 24434241 24434263 chr3R 24434319 24434341 4 78 13.5 10.5 12.0 0.3 100 chr3R 24434241 intron nAChRalpha1 - chr3R 24434291 intron nAChRalpha1 - chr3R 24434341 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-738 2119 chr3R 24493275 24493310 chr3R 24493504 24493539 BS 11 227 3.0 5.0 4.0 2.2 264 chr3R 24493275 intergenic not near genes chr3R 24493407 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_11_24490001 chr3R_24490001 RAL-738 2120 chr3R 24670055 24670199 chr3R 24670165 24670284 22 92 2.0 2.0 2.0 7.3 229 chr3R 24670055 intron slo + chr3R 24670170 intron slo + chr3R 24670284 intron slo + chr3R_22_24670001 chr3R_24670001 RAL-738 2121 chr3R 24671221 24671254 chr3R 24671298 24671302 6 67 1.5 4.5 3.0 1.5 81 chr3R 24671221 intron slo + chr3R 24671262 intron slo + chr3R 24671302 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-738 2122 chr3R 24728339 24728355 chr3R 24728512 24728528 7 172 10.0 7.0 8.5 0.7 189 chr3R 24728339 intron tok + chr3R 24728434 intron tok + chr3R 24728528 intron tok + chr3R_7_24725001 chr3R_24725001 RAL-738 2123 chr3R 24730094 24730120 chr3R 24732467 24732497 Doc 6 2375 5.0 1.5 3.2 1.4 2403 chr3R 24730094 intron tok + chr3R 24731296 intron tok + chr3R 24732497 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-738 2124 chr3R 24743049 24743060 chr3R 24743134 24743145 5 83 12.5 14.5 13.5 0.3 96 chr3R 24743049 intron tok + chr3R 24743097 intron tok + chr3R 24743145 intron tok + chr3R_5_24740001 chr3R_24740001 RAL-738 2125 chr3R 24789987 24790012 chr3R 24790127 24790157 4 138 3.0 3.5 3.2 1.0 170 chr3R 24789987 intron,5` UTR Ets96B +,CG13634 - chr3R 24790072 intron,5` UTR Ets96B +,CG13634 - chr3R 24790157 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-738 2126 chr3R 24846000 24846017 chr3R 24846090 24846107 7 90 11.5 15.0 13.2 0.5 107 chr3R 24846000 intron Esp + chr3R 24846054 intron Esp + chr3R 24846107 intron Esp + chr3R_7_24845001 chr3R_24845001 RAL-738 2127 chr3R 24893475 24893490 chr3R 24893555 24893570 5 78 3.0 4.0 3.5 1.1 95 chr3R 24893475 intron CG31121 - chr3R 24893522 intron CG31121 - chr3R 24893570 intron CG31121 - chr3R_5_24890001 chr3R_24890001 RAL-738 2128 chr3R 24912497 24912514 chr3R 24912579 24912596 4 82 5.0 9.5 7.2 0.5 99 chr3R 24912497 intergenic CR44267 + chr3R 24912546 intergenic CR44267 + chr3R 24912596 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-738 2129 chr3R 24927125 24927161 chr3R 24931916 24931952 Doc 12 4790 2.0 3.0 2.5 3.4 4827 chr3R 24927125 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931952 intergenic CG11771 + chr3R_12_24925001 chr3R_24925001 RAL-738 2130 chr3R 25004902 25004916 chr3R 25004985 25004986 10 79 0.0 6.5 3.2 2.4 84 chr3R 25004902 intron tnc + chr3R 25004944 intron tnc + chr3R 25004986 intron tnc + chr3R_10_25000001 chr3R_25000001 RAL-738 2131 chr3R 25027553 25027570 chr3R 25027765 25027769 9 211 13.5 15.5 14.5 0.6 216 chr3R 25027553 intron Hr96 + chr3R 25027661 intron Hr96 + chr3R 25027769 intron Hr96 + chr3R_9_25025001 chr3R_25025001 RAL-738 2132 chr3R 25136400 25136430 chr3R 25136480 25136509 5 80 11.0 7.0 9.0 0.5 109 chr3R 25136400 3` UTR Bili + chr3R 25136454 3` UTR Bili + chr3R 25136509 3` UTR Bili + chr3R_5_25135001 chr3R_25135001 RAL-738 2133 chr3R 25166364 25166391 chr3R 25166440 25166464 5 75 12.5 13.0 12.8 0.4 100 chr3R 25166364 intergenic not near genes chr3R 25166414 intergenic not near genes chr3R 25166464 intergenic not near genes chr3R_5_25165001 chr3R_25165001 RAL-738 2134 chr3R 25209595 25209628 chr3R 25209677 25209710 12 80 16.0 12.5 14.2 0.8 115 chr3R 25209595 intron CG13654 + chr3R 25209652 intron CG13654 + chr3R 25209710 intron CG13654 + chr3R_12_25205001 chr3R_25205001 RAL-738 2135 chr3R 25235825 25235845 chr3R 25235905 25235925 5 80 8.5 6.5 7.5 0.6 100 chr3R 25235825 intergenic CG10420 - chr3R 25235875 intergenic CG10420 - chr3R 25235925 intergenic CG10420 - chr3R_5_25235001 chr3R_25235001 RAL-738 2136 chr3R 25302135 25302165 chr3R 25302352 25302381 7 219 26.0 14.0 20.0 0.3 246 chr3R 25302135 exon CG13659 + chr3R 25302258 exon CG13659 + chr3R 25302381 intergenic CG13659 +,CG31370 + chr3R_7_25300001 chr3R_25300001 RAL-738 2137 chr3R 25302681 25302710 chr3R 25302929 25302959 7 249 13.5 24.0 18.8 0.4 278 chr3R 25302681 exon CG31370 + chr3R 25302820 exon CG31370 + chr3R 25302959 exon CG31370 + chr3R_7_25300001 chr3R_25300001 RAL-738 2138 chr3R 25368474 25368495 chr3R 25368592 25368613 5 118 4.0 1.0 2.5 1.4 139 chr3R 25368474 intron Fur1 - chr3R 25368544 intron Fur1 - chr3R 25368613 intron Fur1 - chr3R_5_25365001 chr3R_25365001 RAL-738 2139 chr3R 25377104 25377125 chr3R 25377358 25377391 4 259 13.0 18.0 15.5 0.2 287 chr3R 25377104 intron Fur1 - chr3R 25377248 intron Fur1 - chr3R 25377391 intron Fur1 - chr3R_4_25375001 chr3R_25375001 RAL-738 2140 chr3R 25422090 25422095 chr3R 25422155 25422157 4 72 15.5 14.0 14.8 0.3 67 chr3R 25422090 intron Fur1 - chr3R 25422124 intron Fur1 - chr3R 25422157 intron Fur1 - chr3R_4_25420001 chr3R_25420001 RAL-738 2141 chr3R 25464167 25464174 chr3R 25464362 25464382 4 205 19.5 21.0 20.2 0.2 215 chr3R 25464167 intron Fur1 - chr3R 25464274 intron Fur1 - chr3R 25464382 intron Fur1 - chr3R_4_25460001 chr3R_25460001 RAL-738 2142 chr3R 25528037 25528043 chr3R 25528140 25528140 4 102 13.0 17.0 15.0 0.2 103 chr3R 25528037 intron msi + chr3R 25528088 intron msi + chr3R 25528140 intron msi + chr3R_4_25525001 chr3R_25525001 RAL-738 2143 chr3R 25642602 25642621 chr3R 25642685 25642711 6 90 23.0 21.5 22.2 0.3 109 chr3R 25642602 intron jigr1 + chr3R 25642656 intron jigr1 + chr3R 25642711 intron jigr1 + chr3R_6_25640001 chr3R_25640001 RAL-738 2144 chr3R 25652315 25652345 chr3R 25652392 25652421 6 76 15.0 15.0 15.0 0.4 106 chr3R 25652315 intergenic not near genes chr3R 25652368 intergenic not near genes chr3R 25652421 intergenic not near genes chr3R_6_25650001 chr3R_25650001 RAL-738 2145 chr3R 25669064 25669095 chr3R 25669158 25669170 7 90 14.5 10.5 12.5 0.5 106 chr3R 25669064 intron Lgr3 + chr3R 25669117 intron Lgr3 + chr3R 25669170 intron Lgr3 + chr3R_7_25665001 chr3R_25665001 RAL-738 2146 chr3R 25689128 25689162 chr3R 25689236 25689270 7 107 10.0 10.5 10.2 0.6 142 chr3R 25689128 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_7_25685001 chr3R_25685001 RAL-738 2147 chr3R 25725832 25725850 chr3R 25734992 25735010 roo 4 9160 7.0 2.5 4.8 0.7 9178 chr3R 25725832 intron LpR2 - chr3R 25730421 intron LpR2 - chr3R 25735010 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-738 2148 chr3R 25746590 25746617 chr3R 25747004 25747010 7 406 13.0 14.5 13.8 0.5 420 chr3R 25746590 intron LpR1 - chr3R 25746800 intron LpR1 - chr3R 25747010 exon LpR1 - chr3R_7_25745001 chr3R_25745001 RAL-738 2149 chr3R 25765877 25765912 chr3R 25765955 25765965 18 70 5.5 5.5 5.5 2.8 88 chr3R 25765877 intergenic not near genes chr3R 25765921 intergenic not near genes chr3R 25765965 intergenic not near genes chr3R_18_25765001 chr3R_25765001 RAL-738 2150 chr3R 25801267 25801290 chr3R 25802251 25802274 9 982 10.5 14.5 12.5 0.7 1007 chr3R 25801267 intergenic not near genes chr3R 25801770 intergenic not near genes chr3R 25802274 intergenic not near genes chr3R_9_25800001 chr3R_25800001 RAL-738 2151 chr3R 25832702 25832723 chr3R 25841873 25841905 roo 9 9177 3.5 11.5 7.5 1.1 9203 chr3R 25832702 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-738 2152 chr3R 25843637 25843667 chr3R 25843767 25843797 9 130 3.5 3.5 3.5 2.0 160 chr3R 25843637 intergenic CR45653 + chr3R 25843717 intergenic CR45653 + chr3R 25843797 intergenic CR45653 + chr3R_9_25840001 chr3R_25840001 RAL-738 2153 chr3R 25846141 25846161 chr3R 25846236 25846237 4 91 11.0 7.5 9.2 0.4 96 chr3R 25846141 5` UTR CR45654 + chr3R 25846189 5` UTR CR45654 + chr3R 25846237 5` UTR CR45654 + chr3R_4_25845001 chr3R_25845001 RAL-738 2154 chr3R 25850162 25850186 chr3R 25850244 25850268 7 82 13.0 14.0 13.5 0.5 106 chr3R 25850162 intergenic CG14545 - chr3R 25850215 intergenic CG14545 - chr3R 25850268 intergenic CG14545 - chr3R_7_25850001 chr3R_25850001 RAL-738 2155 chr3R 25895088 25895118 chr3R 25895177 25895186 4 84 14.5 6.5 10.5 0.3 98 chr3R 25895088 intergenic CG5913 + chr3R 25895137 intergenic CG5913 + chr3R 25895186 intergenic CG5913 + chr3R_4_25895001 chr3R_25895001 RAL-738 2156 chr3R 25900881 25900907 chr3R 25903598 25903624 6 2720 38.0 29.5 33.8 0.2 2743 chr3R 25900881 exon CG31091 + chr3R 25902252 intergenic CG31091 +,CG31089 + chr3R 25903624 exon,intron CG31089 +,CR43259 - chr3R_6_25900001 chr3R_25900001 RAL-738 2157 chr3R 25920853 25920880 chr3R 25920934 25920939 7 78 6.0 0.0 3.0 1.8 86 chr3R 25920853 3` UTR CG42235 + chr3R 25920896 3` UTR CG42235 + chr3R 25920939 3` UTR CG42235 + chr3R_7_25920001 chr3R_25920001 RAL-738 2158 chr3R 25927522 25927531 chr3R 25927589 25927597 4 70 15.0 8.5 11.8 0.3 75 chr3R 25927522 intron CCAP-R - chr3R 25927560 intron CCAP-R - chr3R 25927597 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-738 2159 chr3R 25952029 25952036 chr3R 25952159 25952165 4 135 8.5 14.5 11.5 0.3 136 chr3R 25952029 intron CCAP-R - chr3R 25952097 intron CCAP-R - chr3R 25952165 intron CCAP-R - chr3R_4_25950001 chr3R_25950001 RAL-738 2160 chr3R 26093846 26093873 chr3R 26093924 26093951 9 75 13.5 15.0 14.2 0.6 105 chr3R 26093846 intron dys - chr3R 26093898 intron dys - chr3R 26093951 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-738 2161 chr3R 26104076 26104097 chr3R 26105155 26105176 5 1080 25.0 19.0 22.0 0.2 1100 chr3R 26104076 intergenic not near genes chr3R 26104626 intergenic not near genes chr3R 26105176 intergenic not near genes chr3R_5_26100001 chr3R_26100001 RAL-738 2162 chr3R 26121953 26121981 chr3R 26122050 26122078 8 96 13.5 13.5 13.5 0.6 125 chr3R 26121953 intron CG31324 + chr3R 26122016 intron CG31324 + chr3R 26122078 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-738 2163 chr3R 26126288 26126570 chr3R 26126374 26126656 8 86 9.0 13.5 11.2 0.7 368 chr3R 26126288 intron CG31324 + chr3R 26126472 intron CG31324 + chr3R 26126656 intron CG31324 + chr3R_8_26125001 chr3R_26125001 RAL-738 2164 chr3R 26169053 26169077 chr3R 26169332 26169356 7 279 10.0 7.5 8.8 0.7 303 chr3R 26169053 intergenic not near genes chr3R 26169204 intergenic not near genes chr3R 26169356 intergenic not near genes chr3R_7_26165001 chr3R_26165001 RAL-738 2165 chr3R 26292104 26292138 chr3R 26292184 26292202 6 73 2.0 3.0 2.5 1.7 98 chr3R 26292104 intergenic not near genes chr3R 26292153 intergenic not near genes chr3R 26292202 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-738 2166 chr3R 26294716 26294749 chr3R 26294794 26294827 16 76 3.0 3.5 3.2 3.8 111 chr3R 26294716 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294827 intergenic not near genes chr3R_16_26290001 chr3R_26290001 RAL-738 2167 chr3R 26298661 26298675 chr3R 26299159 26299184 10 504 23.5 14.5 19.0 0.5 523 chr3R 26298661 intergenic not near genes chr3R 26298922 intergenic not near genes chr3R 26299184 intergenic not near genes chr3R_10_26295001 chr3R_26295001 RAL-738 2168 chr3R 26297970 26298006 chr3R 26299363 26299399 8 1393 34.5 22.0 28.2 0.3 1429 chr3R 26297970 intergenic not near genes chr3R 26298684 intergenic not near genes chr3R 26299399 intergenic not near genes chr3R_8_26295001 chr3R_26295001 RAL-738 2169 chr3R 26314656 26314678 chr3R 26314801 26314823 4 142 10.5 5.5 8.0 0.4 167 chr3R 26314656 intergenic not near genes chr3R 26314740 intergenic not near genes chr3R 26314823 intergenic not near genes chr3R_4_26310001 chr3R_26310001 RAL-738 2170 chr3R 26325694 26325709 chr3R 26325770 26325777 4 76 21.0 21.0 21.0 0.2 83 chr3R 26325694 intron CG33970 + chr3R 26325736 intron CG33970 + chr3R 26325777 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-738 2171 chr3R 26338337 26338352 chr3R 26338429 26338429 4 86 5.5 2.0 3.8 0.8 92 chr3R 26338337 intron CG33970 + chr3R 26338383 intron CG33970 + chr3R 26338429 intron CG33970 + chr3R_4_26335001 chr3R_26335001 RAL-738 2172 chr3R 26342971 26342997 chr3R 26343309 26343335 6 335 12.0 12.5 12.2 0.5 364 chr3R 26342971 intron CG33970 + chr3R 26343153 intron CG33970 + chr3R 26343335 intron CG33970 + chr3R_6_26340001 chr3R_26340001 RAL-738 2173 chr3R 26374845 26374857 chr3R 26374947 26374959 4 102 9.0 12.0 10.5 0.3 114 chr3R 26374845 intergenic not near genes chr3R 26374902 intergenic not near genes chr3R 26374959 intergenic not near genes chr3R_4_26370001 chr3R_26370001 RAL-738 2174 chr3R 26376323 26376358 chr3R 26385482 26385518 roo 14 9156 3.0 0.5 1.8 5.0 9195 chr3R 26376323 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385518 intergenic not near genes chr3R_14_26380001 chr3R_26380001 RAL-738 2175 chr3R 26405928 26405940 chr3R 26406004 26406016 4 76 0.5 5.0 2.8 1.1 88 chr3R 26405928 intergenic not near genes chr3R 26405972 intergenic not near genes chr3R 26406016 intergenic not near genes chr3R_4_26405001 chr3R_26405001 RAL-738 2176 chr3R 26510515 26510533 chr3R 26519576 26519594 roo 7 9056 2.5 4.5 3.5 1.6 9079 chr3R 26510515 intron plum - chr3R 26515054 intron plum - chr3R 26519594 intron,5` UTR plum -,CR45226 + chr3R_7_26515001 chr3R_26515001 RAL-738 2177 chr3R 26551885 26551901 chr3R 26552686 26552702 5 799 7.5 11.5 9.5 0.5 817 chr3R 26551885 intron scrib + chr3R 26552294 intron scrib + chr3R 26552702 intron scrib + chr3R_5_26550001 chr3R_26550001 RAL-738 2178 chr3R 26553230 26553238 chr3R 26553713 26553715 4 490 6.5 12.5 9.5 0.4 485 chr3R 26553230 intron scrib + chr3R 26553472 intron scrib + chr3R 26553715 intron scrib + chr3R_4_26550001 chr3R_26550001 RAL-738 2179 chr3R 26558336 26558353 chr3R 26565643 26565649 Stalker4 7 7306 7.5 7.0 7.2 0.9 7313 chr3R 26558336 intron scrib + chr3R 26561992 intron scrib + chr3R 26565649 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-738 2180 chr3R 26642740 26642762 chr3R 26643120 26643149 jockey 12 390 6.0 5.5 5.8 1.8 409 chr3R 26642740 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643149 intergenic not near genes chr3R_12_26640001 chr3R_26640001 RAL-738 2181 chr3R 26669673 26669690 chr3R 26669755 26669772 5 82 6.0 11.0 8.5 0.5 99 chr3R 26669673 intron beat-VII - chr3R 26669722 intron beat-VII - chr3R 26669772 intron beat-VII - chr3R_5_26665001 chr3R_26665001 RAL-738 2182 chr3R 26672885 26672898 chr3R 26673041 26673055 4 156 10.0 18.0 14.0 0.3 170 chr3R 26672885 intron beat-VII - chr3R 26672970 intron beat-VII - chr3R 26673055 intron beat-VII - chr3R_4_26670001 chr3R_26670001 RAL-738 2183 chr3R 26704099 26704124 chr3R 26704187 26704190 8 79 17.5 11.5 14.5 0.5 91 chr3R 26704099 intron amon - chr3R 26704144 intron amon - chr3R 26704190 intron amon - chr3R_8_26700001 chr3R_26700001 RAL-738 2184 chr3R 26710831 26710839 chr3R 26710914 26710922 4 83 9.5 4.0 6.8 0.5 91 chr3R 26710831 intron amon - chr3R 26710876 intron amon - chr3R 26710922 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-738 2185 chr3R 26710841 26710852 chr3R 26710913 26710936 4 81 6.0 4.0 5.0 0.7 95 chr3R 26710841 intron amon - chr3R 26710888 intron amon - chr3R 26710936 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-738 2186 chr3R 26770242 26770272 chr3R 26770319 26770335 17 75 3.5 6.0 4.8 2.9 93 chr3R 26770242 intergenic CR45563 + chr3R 26770288 intergenic CR45563 + chr3R 26770335 intergenic not near genes chr3R_17_26770001 chr3R_26770001 RAL-738 2187 chr3R 26777587 26777618 chr3R 26777676 26777708 6 82 13.5 14.0 13.8 0.4 121 chr3R 26777587 intergenic not near genes chr3R 26777648 intergenic not near genes chr3R 26777708 intergenic not near genes chr3R_6_26775001 chr3R_26775001 RAL-738 2188 chr3R 26789602 26789616 chr3R 26789681 26789695 5 79 0.0 2.0 1.0 2.5 93 chr3R 26789602 intergenic not near genes chr3R 26789648 intergenic not near genes chr3R 26789695 intergenic not near genes chr3R_5_26785001 chr3R_26785001 RAL-738 2189 chr3R 26810551 26810586 chr3R 26811036 26811046 roo 10 481 5.0 5.5 5.2 1.6 495 chr3R 26810551 intron Tl + chr3R 26810798 intron Tl + chr3R 26811046 intron Tl + chr3R_10_26810001 chr3R_26810001 RAL-738 2190 chr3R 26885694 26885720 chr3R 26885793 26885820 8 100 17.0 18.5 17.8 0.4 126 chr3R 26885694 intron T48 + chr3R 26885757 intron T48 + chr3R 26885820 intron T48 + chr3R_8_26885001 chr3R_26885001 RAL-738 2191 chr3R 26917298 26917323 chr3R 26917378 26917405 10 81 2.0 3.5 2.8 2.6 107 chr3R 26917298 intron sda + chr3R 26917352 intron sda + chr3R 26917405 intron sda + chr3R_10_26915001 chr3R_26915001 RAL-738 2192 chr3R 27007405 27007437 chr3R 27016540 27016552 roo 8 9130 0.5 7.0 3.8 1.7 9147 chr3R 27007405 intron RYa-R + chr3R 27011978 intron RYa-R + chr3R 27016552 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-738 2193 chr3R 27051660 27051695 chr3R 27051751 27051767 5 87 9.0 10.5 9.8 0.5 107 chr3R 27051660 intron RYa-R + chr3R 27051714 intron RYa-R + chr3R 27051767 intron RYa-R + chr3R_5_27050001 chr3R_27050001 RAL-738 2194 chr3R 27091564 27091591 chr3R 27091643 27091651 6 72 4.5 0.5 2.5 1.7 87 chr3R 27091564 intergenic Cpr97Eb - chr3R 27091608 intergenic Cpr97Eb - chr3R 27091651 intergenic not near genes chr3R_6_27090001 chr3R_27090001 RAL-738 2195 chr3R 27133526 27133544 chr3R 27133643 27133661 4 117 13.0 12.5 12.8 0.3 135 chr3R 27133526 intron CG6051 - chr3R 27133594 intron CG6051 - chr3R 27133661 intron CG6051 - chr3R_4_27130001 chr3R_27130001 RAL-738 2196 chr3R 27140523 27140530 chr3R 27148133 27148138 412 4 7610 11.0 11.0 11.0 0.3 7615 chr3R 27140523 intron CG6051 - chr3R 27144330 intron CG6051 - chr3R 27148138 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-738 2197 chr3R 27140531 27140548 chr3R 27148125 27148141 412 13 7606 5.5 7.5 6.5 1.7 7610 chr3R 27140531 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148141 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-738 2198 chr3R 27220484 27220503 chr3R 27220943 27220962 4 458 9.5 23.5 16.5 0.2 478 chr3R 27220484 intergenic not near genes chr3R 27220723 intergenic not near genes chr3R 27220962 intergenic not near genes chr3R_4_27220001 chr3R_27220001 RAL-738 2199 chr3R 27322426 27322451 chr3R 27322532 27322548 4 100 4.0 6.5 5.2 0.6 122 chr3R 27322426 intergenic CG3339 - chr3R 27322487 intergenic CG3339 - chr3R 27322548 intergenic CG3339 - chr3R_4_27320001 chr3R_27320001 RAL-738 2200 chr3R 27329476 27329495 chr3R 27329550 27329572 6 76 6.5 2.0 4.2 1.2 96 chr3R 27329476 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329572 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-738 2201 chr3R 27342801 27342825 chr3R 27351376 27351406 Tirant 10 8579 3.5 5.0 4.2 1.9 8605 chr3R 27342801 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_10_27345001 chr3R_27345001 RAL-738 2202 chr3R 27377474 27377492 chr3R 27377559 27377580 5 81 10.0 5.0 7.5 0.6 106 chr3R 27377474 3` UTR side - chr3R 27377527 3` UTR side - chr3R 27377580 3` UTR side - chr3R_5_27375001 chr3R_27375001 RAL-738 2203 chr3R 27465127 27465158 chr3R 27466289 27466320 4 1162 14.5 15.0 14.8 0.3 1193 chr3R 27465127 exon CG13978 + chr3R 27465724 exon CG13978 + chr3R 27466320 exon CG13978 + chr3R_4_27465001 chr3R_27465001 RAL-738 2204 chr3R 27495213 27495242 chr3R 27495642 27495671 10 428 7.0 12.0 9.5 1.0 458 chr3R 27495213 intergenic not near genes chr3R 27495442 intergenic not near genes chr3R 27495671 intergenic not near genes chr3R_10_27495001 chr3R_27495001 RAL-738 2205 chr3R 27521159 27521188 chr3R 27530368 27530397 roo 5 9209 2.0 3.5 2.8 1.3 9238 chr3R 27521159 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530397 intron CG12885 + chr3R_5_27525001 chr3R_27525001 RAL-738 2206 chr3R 27574106 27574126 chr3R 27574505 27574525 4 399 19.0 9.5 14.2 0.3 419 chr3R 27574106 intron wdb - chr3R 27574316 intron wdb - chr3R 27574525 intron wdb - chr3R_4_27570001 chr3R_27570001 RAL-738 2207 chr3R 27595052 27595081 chr3R 27595135 27595141 11 79 12.0 12.0 12.0 0.8 89 chr3R 27595052 intron CG5639 - chr3R 27595096 intron CG5639 - chr3R 27595141 intron CG5639 - chr3R_11_27595001 chr3R_27595001 RAL-738 2208 chr3R 27619706 27619726 chr3R 27619821 27619831 5 113 13.5 20.0 16.8 0.3 125 chr3R 27619706 intron Tusp + chr3R 27619768 intron Tusp + chr3R 27619831 intron Tusp + chr3R_5_27615001 chr3R_27615001 RAL-738 2209 chr3R 27627111 27627119 chr3R 27627190 27627218 5 92 8.5 11.0 9.8 0.5 107 chr3R 27627111 intron Tusp + chr3R 27627164 intron Tusp + chr3R 27627218 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-738 2210 chr3R 27652120 27652150 chr3R 27657283 27657314 5 5166 25.0 25.0 25.0 0.2 5194 chr3R 27652120 intron tau - chr3R 27654717 intron tau - chr3R 27657314 3` UTR Mlc1 - chr3R_5_27650001 chr3R_27650001 RAL-738 2211 chr3R 27706774 27706803 chr3R 27706851 27706873 7 76 5.0 3.5 4.2 1.3 99 chr3R 27706774 intergenic CG12428 -,CG12877 + chr3R 27706824 intergenic CG12428 -,CG12877 + chr3R 27706873 intergenic CG12428 -,CG12877 + chr3R_7_27705001 chr3R_27705001 RAL-738 2212 chr3R 27718582 27718595 chr3R 27718661 27718674 6 79 14.5 13.0 13.8 0.4 92 chr3R 27718582 intergenic not near genes chr3R 27718628 intergenic not near genes chr3R 27718674 intergenic not near genes chr3R_6_27715001 chr3R_27715001 RAL-738 2213 chr3R 27725566 27725585 chr3R 27731008 27731027 I-element 6 5442 4.5 4.5 4.5 1.1 5461 chr3R 27725566 intergenic not near genes chr3R 27728296 intergenic not near genes chr3R 27731027 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-738 2214 chr3R 27725587 27725604 chr3R 27731007 27731047 I-element 8 5439 3.0 4.5 3.8 1.7 5460 chr3R 27725587 intergenic not near genes chr3R 27728317 intergenic not near genes chr3R 27731047 intergenic not near genes chr3R_8_27725001 chr3R_27725001 RAL-738 2215 chr3R 27789095 27789113 chr3R 27789156 27789170 5 66 10.0 9.5 9.8 0.5 75 chr3R 27789095 exon CG34353 - chr3R 27789132 intron CG34353 - chr3R 27789170 intron CG34353 - chr3R_5_27785001 chr3R_27785001 RAL-738 2216 chr3R 27856760 27856780 chr3R 27858243 27858244 hopper2 10 1480 10.5 5.0 7.8 1.1 1484 chr3R 27856760 intron CG34353 - chr3R 27857502 intron CG34353 - chr3R 27858244 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-738 2217 chr3R 27856787 27856793 chr3R 27858242 27858276 hopper2 4 1475 5.0 5.0 5.0 0.7 1489 chr3R 27856787 intron CG34353 - chr3R 27857532 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-738 2218 chr3R 27862959 27862980 chr3R 27868259 27868285 Transpac 11 5304 4.0 3.5 3.8 2.3 5326 chr3R 27862959 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_11_27865001 chr3R_27865001 RAL-738 2219 chr3R 27875702 27875715 chr3R 27882757 27882770 297 11 7054 11.5 7.0 9.2 1.1 7068 chr3R 27875702 intron CG34353 - chr3R 27879236 intron CG34353 - chr3R 27882770 intron CG34353 - chr3R_11_27875001 chr3R_27875001 RAL-738 2220 chr3R 27875719 27875732 chr3R 27882756 27882787 297 9 7053 4.5 6.0 5.2 1.5 7068 chr3R 27875719 intron CG34353 - chr3R 27879253 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-738 2221 chr3R 27901236 27901263 chr3R 27901333 27901335 6 92 16.5 19.0 17.8 0.3 99 chr3R 27901236 intron CG34353 - chr3R 27901286 intron CG34353 - chr3R 27901335 intron CG34353 - chr3R_6_27900001 chr3R_27900001 RAL-738 2222 chr3R 28068501 28068527 chr3R 28073933 28073969 I-element 10 5439 2.5 1.5 2.0 3.3 5468 chr3R 28068501 intron CG34362 + chr3R 28071235 intron CG34362 + chr3R 28073969 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-738 2223 chr3R 28102569 28102595 chr3R 28102807 28102833 8 234 7.5 14.5 11.0 0.7 264 chr3R 28102569 intergenic not near genes chr3R 28102701 intergenic not near genes chr3R 28102833 intergenic not near genes chr3R_8_28100001 chr3R_28100001 RAL-738 2224 chr3R 28169016 28169036 chr3R 28169096 28169126 4 88 5.0 11.0 8.0 0.4 110 chr3R 28169016 intron CG34354 + chr3R 28169071 intron CG34354 + chr3R 28169126 intron CG34354 + chr3R_4_28165001 chr3R_28165001 RAL-738 2225 chr3R 28173671 28173704 chr3R 28181101 28181134 mdg1 4 7430 3.0 2.5 2.8 1.1 7463 chr3R 28173671 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-738 2226 chr3R 28253337 28253371 chr3R 28255846 28255881 jockey 11 2507 3.0 3.5 3.2 2.6 2544 chr3R 28253337 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-738 2227 chr3R 28282989 28283012 chr3R 28283618 28283641 6 627 18.5 23.0 20.8 0.3 652 chr3R 28282989 exon CG34436 + chr3R 28283315 exon CG34436 + chr3R 28283641 intergenic CG34437 +,CG34436 + chr3R_6_28280001 chr3R_28280001 RAL-738 2228 chr3R 28302100 28302134 chr3R 28302539 28302573 jockey 13 439 4.5 6.0 5.2 2.1 473 chr3R 28302100 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302573 intergenic not near genes chr3R_13_28300001 chr3R_28300001 RAL-738 2229 chr3R 28327364 28327393 chr3R 28327738 28327757 6 372 15.0 18.5 16.8 0.3 393 chr3R 28327364 intron larp - chr3R 28327560 intron larp - chr3R 28327757 intron larp - chr3R_6_28325001 chr3R_28325001 RAL-738 2230 chr3R 28331518 28331527 chr3R 28331597 28331606 4 79 6.5 6.5 6.5 0.5 88 chr3R 28331518 intron larp - chr3R 28331562 intron larp - chr3R 28331606 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-738 2231 chr3R 28345647 28345665 chr3R 28345723 28345741 4 76 7.0 5.5 6.2 0.6 94 chr3R 28345647 intergenic Moca-cyp + chr3R 28345694 intergenic not near genes chr3R 28345741 intergenic not near genes chr3R_4_28345001 chr3R_28345001 RAL-738 2232 chr3R 28390127 28390147 chr3R 28390196 28390215 7 71 14.0 12.5 13.2 0.5 88 chr3R 28390127 intergenic not near genes chr3R 28390171 intergenic not near genes chr3R 28390215 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-738 2233 chr3R 28393700 28393732 chr3R 28393799 28393832 7 100 9.5 10.5 10.0 0.6 132 chr3R 28393700 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393832 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-738 2234 chr3R 28407708 28407738 chr3R 28407793 28407821 10 80 8.5 11.5 10.0 0.9 113 chr3R 28407708 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407821 intergenic not near genes chr3R_10_28405001 chr3R_28405001 RAL-738 2235 chr3R 28424178 28424190 chr3R 28424267 28424269 4 86 19.0 15.5 17.2 0.2 91 chr3R 28424178 intron beat-VI + chr3R 28424224 intron beat-VI + chr3R 28424269 intron beat-VI + chr3R_4_28420001 chr3R_28420001 RAL-738 2236 chr3R 28425188 28425220 chr3R 28425267 28425295 12 72 13.0 17.5 15.2 0.7 107 chr3R 28425188 intron beat-VI + chr3R 28425242 intron beat-VI + chr3R 28425295 intron beat-VI + chr3R_12_28425001 chr3R_28425001 RAL-738 2237 chr3R 28478991 28479168 chr3R 28479087 28479251 16 86 4.5 13.0 8.8 1.6 260 chr3R 28478991 intergenic not near genes chr3R 28479121 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_16_28475001 chr3R_28475001 RAL-738 2238 chr3R 28484354 28484359 chr3R 28486271 28486292 26 1919 51.5 54.0 52.8 0.5 1938 chr3R 28484354 intergenic CG1894 + chr3R 28485323 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_26_28485001 chr3R_28485001 RAL-738 2239 chr3R 28537827 28537845 chr3R 28537911 28537929 4 84 9.0 16.0 12.5 0.3 102 chr3R 28537827 intron Ppn - chr3R 28537878 intron Ppn - chr3R 28537929 intron Ppn - chr3R_4_28535001 chr3R_28535001 RAL-738 2240 chr3R 28590055 28590092 chr3R 28590132 28590159 12 72 15.5 9.0 12.2 0.9 104 chr3R 28590055 5` UTR MRE23 + chr3R 28590107 5` UTR MRE23 + chr3R 28590159 5` UTR MRE23 + chr3R_12_28590001 chr3R_28590001 RAL-738 2241 chr3R 28597503 28597518 chr3R 28597572 28597589 5 70 14.0 12.0 13.0 0.4 86 chr3R 28597503 intergenic not near genes chr3R 28597546 intergenic not near genes chr3R 28597589 intergenic Noa36 - chr3R_5_28595001 chr3R_28595001 RAL-738 2242 chr3R 28599390 28599403 chr3R 28599523 28599550 4 144 9.5 11.5 10.5 0.3 160 chr3R 28599390 intergenic Noa36 - chr3R 28599470 intergenic Noa36 - chr3R 28599550 intergenic Noa36 - chr3R_4_28595001 chr3R_28595001 RAL-738 2243 chr3R 28742493 28742511 chr3R 28742569 28742587 6 76 13.0 12.0 12.5 0.4 94 chr3R 28742493 intron AstA-R2 - chr3R 28742540 intron AstA-R2 - chr3R 28742587 intron AstA-R2 - chr3R_6_28740001 chr3R_28740001 RAL-738 2244 chr3R 28758283 28758297 chr3R 28763900 28763914 roo 7 5615 7.5 0.0 3.8 1.5 5631 chr3R 28758283 intergenic aqrs - chr3R 28761098 intergenic not near genes chr3R 28763914 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-738 2245 chr3R 28763900 28763906 chr3R 28771340 28771349 Stalker4 4 7442 0.0 0.5 0.2 3.3 7449 chr3R 28763900 intergenic not near genes chr3R 28767624 intergenic not near genes chr3R 28771349 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-738 2246 chr3R 28792889 28792904 chr3R 28797962 28797999 jockey 8 5090 1.0 5.0 3.0 2.0 5110 chr3R 28792889 intergenic not near genes chr3R 28795444 intergenic not near genes chr3R 28797999 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-738 2247 chr3R 28827684 28827707 chr3R 28827840 28827863 7 156 21.0 17.0 19.0 0.3 179 chr3R 28827684 intron WASp - chr3R 28827774 intron WASp - chr3R 28827863 intron WASp - chr3R_7_28825001 chr3R_28825001 RAL-738 2248 chr3R 28830901 28830918 chr3R 28830979 28830987 7 77 19.0 19.5 19.2 0.3 86 chr3R 28830901 intron WASp - chr3R 28830944 intron WASp - chr3R 28830987 intron WASp - chr3R_7_28830001 chr3R_28830001 RAL-738 2249 chr3R 21907534 21907535 chr3R 28831798 28831803 111 6924266 41.0 28.5 34.8 3.1 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_111_25365001 chr3R_25365001 RAL-738 2250 chr3R 29009958 29009973 chr3R 29010064 29010079 5 102 15.5 15.0 15.2 0.3 121 chr3R 29009958 intron wat - chr3R 29010018 intron wat - chr3R 29010079 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-738 2251 chr3R 21907534 21907536 chr3R 29013340 29013340 4 7105805 41.0 26.5 33.8 0.1 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-738 2252 chr3R 29025037 29025075 chr3R 29025307 29025338 11 268 20.5 14.0 17.2 0.6 301 chr3R 29025037 intron CG14518 + chr3R 29025188 exon CG14518 + chr3R 29025338 exon CG14518 + chr3R_11_29025001 chr3R_29025001 RAL-738 2253 chr3R 29070054 29070080 chr3R 29070135 29070143 9 79 7.0 4.0 5.5 1.4 89 chr3R 29070054 intron CG11873 + chr3R 29070098 intron CG11873 + chr3R 29070143 intron CG11873 + chr3R_9_29070001 chr3R_29070001 RAL-738 2254 chr3R 29079379 29079411 chr3R 29080751 29080771 NOF 12 1369 3.5 3.0 3.2 2.9 1392 chr3R 29079379 intron CG11873 + chr3R 29080075 intron CG11873 + chr3R 29080771 intron CG11873 + chr3R_12_29080001 chr3R_29080001 RAL-738 2255 chr3R 29195979 29195991 chr3R 29196058 29196069 4 79 15.0 9.0 12.0 0.3 90 chr3R 29195979 intergenic not near genes chr3R 29196024 intergenic not near genes chr3R 29196069 intergenic not near genes chr3R_4_29195001 chr3R_29195001 RAL-738 2256 chr3R 29213059 29213092 chr3R 29213142 29213156 18 82 7.5 5.5 6.5 2.4 97 chr3R 29213059 intergenic not near genes chr3R 29213108 intergenic not near genes chr3R 29213156 intergenic not near genes chr3R_18_29210001 chr3R_29210001 RAL-738 2257 chr3R 29237245 29237284 chr3R 29239266 29239294 13 2014 21.5 12.0 16.8 0.7 2049 chr3R 29237245 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239294 exon CG31427 - chr3R_13_29235001 chr3R_29235001 RAL-738 2258 chr3R 29239234 29239248 chr3R 29245513 29245520 6 6283 14.0 19.0 16.5 0.3 6286 chr3R 29239234 exon CG31427 - chr3R 29242377 exon CG31445 - chr3R 29245520 exon SP1029 - chr3R_6_29240001 chr3R_29240001 RAL-738 2259 chr3R 29319824 29319851 chr3R 29320143 29320162 jockey 4 317 5.0 9.5 7.2 0.5 338 chr3R 29319824 intergenic Cnx99A - chr3R 29319993 intergenic Cnx99A - chr3R 29320162 intergenic not near genes chr3R_4_29315001 chr3R_29315001 RAL-738 2260 chr3R 29362858 29362887 chr3R 29362947 29362971 8 86 11.5 16.0 13.8 0.5 113 chr3R 29362858 intergenic not near genes chr3R 29362914 intergenic not near genes chr3R 29362971 intergenic not near genes chr3R_8_29360001 chr3R_29360001 RAL-738 2261 chr3R 29380977 29380991 chr3R 29381042 29381072 5 74 8.0 11.5 9.8 0.5 95 chr3R 29380977 intron Ptp99A + chr3R 29381024 intron Ptp99A + chr3R 29381072 intron Ptp99A + chr3R_5_29380001 chr3R_29380001 RAL-738 2262 chr3R 29406618 29406647 chr3R 29407904 29407928 jockey 7 1280 6.0 7.0 6.5 0.9 1310 chr3R 29406618 intron Ptp99A + chr3R 29407273 intron Ptp99A + chr3R 29407928 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-738 2263 chr3R 29449365 29449387 chr3R 29449443 29449465 5 78 13.5 16.5 15.0 0.3 100 chr3R 29449365 intron Ptp99A + chr3R 29449415 intron Ptp99A + chr3R 29449465 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-738 2264 chr3R 29505919 29505926 chr3R 29505996 29506003 4 77 20.5 24.0 22.2 0.2 84 chr3R 29505919 intergenic not near genes chr3R 29505961 intergenic not near genes chr3R 29506003 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-738 2265 chr3R 29513023 29513054 chr3R 29513097 29513130 6 70 13.5 18.0 15.8 0.4 107 chr3R 29513023 intergenic not near genes chr3R 29513076 intergenic not near genes chr3R 29513130 intergenic not near genes chr3R_6_29510001 chr3R_29510001 RAL-738 2266 chr3R 29539430 29539460 chr3R 29539506 29539517 9 69 3.0 0.5 1.8 3.2 87 chr3R 29539430 intergenic not near genes chr3R 29539474 intergenic not near genes chr3R 29539517 intergenic not near genes chr3R_9_29535001 chr3R_29535001 RAL-738 2267 chr3R 29590378 29590385 chr3R 29590471 29590476 5 92 11.5 17.5 14.5 0.3 98 chr3R 29590378 intron CG31041 - chr3R 29590427 intron CG31041 - chr3R 29590476 intron CG31041 - chr3R_5_29590001 chr3R_29590001 RAL-738 2268 chr3R 29592749 29592765 chr3R 29592817 29592843 4 73 4.0 8.0 6.0 0.6 94 chr3R 29592749 intron alph + chr3R 29592796 intron alph + chr3R 29592843 intron alph + chr3R_4_29590001 chr3R_29590001 RAL-738 2269 chr3R 29626457 29626480 chr3R 29626586 29626588 6 120 8.0 7.0 7.5 0.7 131 chr3R 29626457 intergenic not near genes chr3R 29626522 intergenic not near genes chr3R 29626588 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-738 2270 chr3R 29655650 29655661 chr3R 29655729 29655740 5 78 12.0 9.5 10.8 0.4 90 chr3R 29655650 intron Dop1R2 - chr3R 29655695 intron Dop1R2 - chr3R 29655740 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-738 2271 chr3R 29738266 29738301 chr3R 29739733 29739768 hobo 13 1464 2.5 11.5 7.0 1.6 1502 chr3R 29738266 intergenic CG1969 +,CG7598 + chr3R 29739017 intron CG1969 + chr3R 29739768 5` UTR CG1969 + chr3R_13_29735001 chr3R_29735001 RAL-738 2272 chr3R 29758939 29758960 chr3R 29759017 29759038 8 75 22.0 26.0 24.0 0.3 99 chr3R 29758939 3` UTR CR44953 - chr3R 29758988 3` UTR CR44953 - chr3R 29759038 3` UTR CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-738 2273 chr3R 29760360 29760391 chr3R 29761561 29761592 pogo 12 1200 4.0 3.0 3.5 2.7 1232 chr3R 29760360 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761592 intergenic not near genes chr3R_12_29760001 chr3R_29760001 RAL-738 2274 chr3R 29854831 29854856 chr3R 29854911 29854916 5 74 15.5 16.0 15.8 0.3 85 chr3R 29854831 3` UTR dgt1 - chr3R 29854874 exon dgt1 - chr3R 29854916 exon dgt1 - chr3R_5_29850001 chr3R_29850001 RAL-738 2275 chr3R 29882019 29882051 chr3R 29891175 29891208 roo 20 9155 3.0 6.0 4.5 3.6 9189 chr3R 29882019 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_20_29885001 chr3R_29885001 RAL-738 2276 chr3R 29963479 29963512 chr3R 29963577 29963614 6 101 9.5 14.0 11.8 0.5 135 chr3R 29963479 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963614 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-738 2277 chr3R 29966065 29966071 chr3R 29966142 29966156 5 82 4.5 9.0 6.8 0.6 91 chr3R 29966065 intron TkR99D - chr3R 29966110 intron TkR99D - chr3R 29966156 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-738 2278 chr3R 29979725 29979738 chr3R 29979852 29979864 4 127 10.0 12.0 11.0 0.3 139 chr3R 29979725 intergenic not near genes chr3R 29979794 intergenic not near genes chr3R 29979864 intergenic not near genes chr3R_4_29975001 chr3R_29975001 RAL-738 2279 chr3R 30013676 30013704 chr3R 30013759 30013770 8 80 10.5 17.5 14.0 0.5 94 chr3R 30013676 intron CG7920 - chr3R 30013723 intron CG7920 - chr3R 30013770 intron CG7920 - chr3R_8_30010001 chr3R_30010001 RAL-738 2280 chr3R 30060421 30060440 chr3R 30060499 30060518 7 77 13.5 12.0 12.8 0.5 97 chr3R 30060421 intron sima + chr3R 30060470 intron sima + chr3R 30060518 intron sima + chr3R_7_30060001 chr3R_30060001 RAL-738 2281 chr3R 30084862 30084882 chr3R 30086320 30086349 hobo 7 1462 4.0 8.0 6.0 1.0 1487 chr3R 30084862 intron sima + chr3R 30085606 intron sima + chr3R 30086349 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-738 2282 chr3R 30136966 30136977 chr3R 30137043 30137055 6 77 12.0 16.0 14.0 0.4 89 chr3R 30136966 exon AdoR - chr3R 30137010 intron AdoR - chr3R 30137055 intron AdoR - chr3R_6_30135001 chr3R_30135001 RAL-738 2283 chr3R 30210670 30210782 chr3R 30210743 30210882 6 108 11.5 14.5 13.0 0.4 212 chr3R 30210670 intergenic CecA1 +,Anp + chr3R 30210776 intergenic CecA1 +,Anp + chr3R 30210882 5` UTR CecA1 + chr3R_6_30210001 chr3R_30210001 RAL-738 2284 chr3R 30224648 30224671 chr3R 30224726 30224749 6 77 4.5 3.5 4.0 1.2 101 chr3R 30224648 intergenic not near genes chr3R 30224698 intergenic not near genes chr3R 30224749 intergenic not near genes chr3R_6_30220001 chr3R_30220001 RAL-738 2285 chr3R 30238762 30238797 chr3R 30239926 30239962 1360 11 1164 5.0 1.0 3.0 2.8 1200 chr3R 30238762 intergenic not near genes chr3R 30239362 intergenic not near genes chr3R 30239962 intergenic not near genes chr3R_11_30235001 chr3R_30235001 RAL-738 2286 chr3R 30252272 30252290 chr3R 30252630 30252630 5 345 29.0 0.0 14.5 0.3 358 chr3R 30252272 exon CG9682 + chr3R 30252451 exon CG9682 + chr3R 30252630 exon CG9682 + chr3R_5_30250001 chr3R_30250001 RAL-738 2287 chr3R 30260373 30260397 chr3R 30260449 30260473 11 73 2.0 5.5 3.8 2.3 100 chr3R 30260373 intergenic not near genes chr3R 30260423 intergenic not near genes chr3R 30260473 intergenic not near genes chr3R_11_30260001 chr3R_30260001 RAL-738 2288 chr3R 30262575 30262606 chr3R 30262672 30262703 9 91 9.0 14.0 11.5 0.7 128 chr3R 30262575 intergenic not near genes chr3R 30262639 intergenic not near genes chr3R 30262703 intergenic not near genes chr3R_9_30260001 chr3R_30260001 RAL-738 2289 chr3R 30317329 30317357 chr3R 30324921 30324935 roo 9 7585 1.5 5.0 3.2 2.1 7606 chr3R 30317329 intron hdc + chr3R 30321132 intron hdc + chr3R 30324935 intron hdc + chr3R_9_30320001 chr3R_30320001 RAL-738 2290 chr3R 30330514 30330523 chr3R 30330573 30330603 4 75 12.5 9.0 10.8 0.3 89 chr3R 30330514 intron hdc + chr3R 30330558 intron hdc + chr3R 30330603 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-738 2291 chr3R 30336933 30336940 chr3R 30337040 30337055 4 113 10.0 16.0 13.0 0.3 122 chr3R 30336933 intron hdc + chr3R 30336994 intron hdc + chr3R 30337055 intron hdc + chr3R_4_30335001 chr3R_30335001 RAL-738 2292 chr3R 30355870 30355892 chr3R 30355942 30355948 6 73 9.0 10.5 9.8 0.6 78 chr3R 30355870 intron hdc + chr3R 30355909 intron hdc + chr3R 30355948 intron hdc + chr3R_6_30355001 chr3R_30355001 RAL-738 2293 chr3R 30364847 30364860 chr3R 30365011 30365032 6 169 11.0 8.0 9.5 0.6 185 chr3R 30364847 3` UTR hdc + chr3R 30364940 3` UTR hdc + chr3R 30365032 3` UTR hdc + chr3R_6_30360001 chr3R_30360001 RAL-738 2294 chr3R 30375555 30375572 chr3R 30383180 30383195 412 5 7625 3.0 6.5 4.8 0.9 7640 chr3R 30375555 intergenic not near genes chr3R 30379375 intergenic not near genes chr3R 30383195 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-738 2295 chr3R 30396215 30396244 chr3R 30404481 30404510 roo 9 8266 4.0 8.0 6.0 1.3 8295 chr3R 30396215 intergenic not near genes chr3R 30400362 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_9_30400001 chr3R_30400001 RAL-738 2296 chr3R 30422943 30422975 chr3R 30423041 30423062 7 88 9.0 7.5 8.2 0.8 119 chr3R 30422943 5` UTR,5` UTR CG2217 -,CG42740 - chr3R 30423002 intergenic CG15535 -,CG2217 -,CG42740 - chr3R 30423062 3` UTR CG15535 - chr3R_7_30420001 chr3R_30420001 RAL-738 2297 chr3R 30440693 30440715 chr3R 30440952 30440974 9 258 19.5 16.5 18.0 0.5 281 chr3R 30440693 intron CG15537 - chr3R 30440834 intron CG15537 - chr3R 30440974 intron CG15537 - chr3R_9_30440001 chr3R_30440001 RAL-738 2298 chr3R 30456400 30456420 chr3R 30456474 30456500 9 79 1.5 6.0 3.8 1.9 100 chr3R 30456400 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456500 3` UTR CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-738 2299 chr3R 30458011 30458041 chr3R 30458091 30458105 9 78 17.0 19.0 18.0 0.5 94 chr3R 30458011 intron CG2224 - chr3R 30458058 intron CG2224 - chr3R 30458105 intron CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-738 2300 chr3R 30471900 30471936 chr3R 30471976 30472012 8 74 12.5 16.0 14.2 0.5 112 chr3R 30471900 intron PH4alphaEFB + chr3R 30471956 intron PH4alphaEFB + chr3R 30472012 intron PH4alphaEFB + chr3R_8_30470001 chr3R_30470001 RAL-738 2301 chr3R 30480474 30480509 chr3R 30482941 30482977 jockey 20 2464 3.5 6.5 5.0 3.3 2503 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_20_30480001 chr3R_30480001 RAL-738 2302 chr3R 30498405 30498430 chr3R 30498605 30498630 10 200 0.0 5.0 2.5 2.9 225 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498518 intron PH4alphaNE1 - chr3R 30498630 intron PH4alphaNE1 - chr3R_10_30495001 chr3R_30495001 RAL-738 2303 chr3R 30551268 30551290 chr3R 30551352 30551374 5 81 12.0 7.0 9.5 0.5 106 chr3R 30551268 intron tmod + chr3R 30551321 intron tmod + chr3R 30551374 intron tmod + chr3R_5_30550001 chr3R_30550001 RAL-738 2304 chr3R 30567326 30567339 chr3R 30567404 30567429 6 81 8.0 8.0 8.0 0.7 103 chr3R 30567326 intron tmod + chr3R 30567378 intron tmod + chr3R 30567429 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-738 2305 chr3R 30571708 30571730 chr3R 30571788 30571810 9 79 9.5 15.0 12.2 0.7 102 chr3R 30571708 intron tmod + chr3R 30571759 intron tmod + chr3R 30571810 exon tmod + chr3R_9_30570001 chr3R_30570001 RAL-738 2306 chr3R 30592503 30592537 chr3R 30592613 30592621 11 106 12.0 17.5 14.8 0.7 118 chr3R 30592503 intergenic CG2246 - chr3R 30592562 intergenic CG2246 - chr3R 30592621 intergenic CG2246 - chr3R_11_30590001 chr3R_30590001 RAL-738 2307 chr3R 30627606 30627638 chr3R 30627685 30627687 17 73 5.5 10.0 7.8 1.9 81 chr3R 30627606 exon CG2267 - chr3R 30627646 exon CG2267 - chr3R 30627687 exon CG2267 - chr3R_17_30625001 chr3R_30625001 RAL-738 2308 chr3R 30679518 30679551 chr3R 30686986 30687020 blood 8 7468 4.5 4.5 4.5 1.5 7502 chr3R 30679518 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-738 2309 chr3R 30690166 30690190 chr3R 30690250 30690257 8 80 17.5 21.0 19.2 0.4 91 chr3R 30690166 intergenic Spn100A + chr3R 30690212 intergenic Spn100A + chr3R 30690257 intergenic Spn100A + chr3R_8_30690001 chr3R_30690001 RAL-738 2310 chr3R 30798314 30798348 chr3R 30798395 30798430 7 82 13.5 18.0 15.8 0.4 116 chr3R 30798314 intron wts - chr3R 30798372 intron wts - chr3R 30798430 intron wts - chr3R_7_30795001 chr3R_30795001 RAL-738 2311 chr3R 30807931 30807947 chr3R 30808141 30808157 4 210 10.5 0.0 5.2 0.6 226 chr3R 30807931 3` UTR dj-1beta + chr3R 30808044 intergenic dj-1beta + chr3R 30808157 intergenic dj-1beta +,cindr + chr3R_4_30805001 chr3R_30805001 RAL-738 2312 chr3R 30859407 30859427 chr3R 30859485 30859505 9 76 5.0 2.5 3.8 1.9 98 chr3R 30859407 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859505 intergenic not near genes chr3R_9_30855001 chr3R_30855001 RAL-738 2313 chr3R 30896163 30896198 chr3R 30896259 30896292 6 92 15.0 16.0 15.5 0.4 129 chr3R 30896163 intron Cyp4c3 + chr3R 30896228 intron Cyp4c3 + chr3R 30896292 intron Cyp4c3 + chr3R_6_30895001 chr3R_30895001 RAL-738 2314 chr3R 30900542 30900558 chr3R 30901671 30901672 4 1128 12.0 11.0 11.5 0.3 1130 chr3R 30900542 3` UTR Cyp4c3 + chr3R 30901107 intron CG33483 - chr3R 30901672 intron CG33483 - chr3R_4_30900001 chr3R_30900001 RAL-738 2315 chr3R 31000231 31000261 chr3R 31000386 31000408 7 151 8.0 15.5 11.8 0.5 177 chr3R 31000231 intron 5-HT7 - chr3R 31000320 intron 5-HT7 - chr3R 31000408 intron 5-HT7 - chr3R_7_31000001 chr3R_31000001 RAL-738 2316 chr3R 31042111 31042143 chr3R 31042198 31042230 15 83 6.0 6.0 6.0 2.1 119 chr3R 31042111 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_15_31040001 chr3R_31040001 RAL-738 2317 chr3R 31067035 31067057 chr3R 31067151 31067164 4 111 18.5 20.5 19.5 0.2 129 chr3R 31067035 intron Sox100B + chr3R 31067100 intron Sox100B + chr3R 31067164 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-738 2318 chr3R 31074233 31074248 chr3R 31081831 31081846 springer 6 7598 11.5 2.0 6.8 0.8 7613 chr3R 31074233 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081846 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-738 2319 chr3R 31074249 31074261 chr3R 31081829 31081857 springer 6 7594 8.0 1.0 4.5 1.1 7608 chr3R 31074249 intron Sox100B + chr3R 31078053 intron Sox100B + chr3R 31081857 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-738 2320 chr3R 31100048 31100066 chr3R 31100146 31100164 6 98 10.5 13.5 12.0 0.5 116 chr3R 31100048 exon CG15553 - chr3R 31100106 exon CG15553 - chr3R 31100164 exon CG15553 - chr3R_6_31100001 chr3R_31100001 RAL-738 2321 chr3R 31146758 31146784 chr3R 31146836 31146862 7 77 20.0 19.0 19.5 0.3 104 chr3R 31146758 intron Gycbeta100B + chr3R 31146810 intron Gycbeta100B + chr3R 31146862 intron Gycbeta100B + chr3R_7_31145001 chr3R_31145001 RAL-738 2322 chr3R 31188029 31188055 chr3R 31188126 31188154 6 91 13.0 14.5 13.8 0.4 125 chr3R 31188029 intron mesh - chr3R 31188092 intron mesh - chr3R 31188154 intron mesh - chr3R_6_31185001 chr3R_31185001 RAL-738 2323 chr3R 31274374 31274390 chr3R 31274451 31274468 4 74 17.5 11.0 14.2 0.3 94 chr3R 31274374 intergenic not near genes chr3R 31274421 intergenic not near genes chr3R 31274468 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-738 2324 chr3R 31413091 31413113 chr3R 31418291 31418311 copia 14 5198 5.0 5.0 5.0 2.3 5220 chr3R 31413091 intron Gprk2 + chr3R 31415701 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_14_31415001 chr3R_31415001 RAL-738 2325 chr3R 31413115 31413123 chr3R 31418290 31418304 copia 6 5187 3.0 5.0 4.0 1.2 5189 chr3R 31413115 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418304 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-738 2326 chr3R 31426880 31426911 chr3R 31426971 31427003 15 89 4.0 3.5 3.8 3.1 123 chr3R 31426880 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_15_31425001 chr3R_31425001 RAL-738 2327 chr3R 31435362 31435382 chr3R 31435514 31435534 6 151 16.0 17.5 16.8 0.3 172 chr3R 31435362 intron Gprk2 + chr3R 31435448 intron Gprk2 + chr3R 31435534 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-738 2328 chr3R 31442269 31442297 chr3R 31442354 31442382 7 84 13.5 16.5 15.0 0.4 113 chr3R 31442269 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442382 intron Gprk2 + chr3R_7_31440001 chr3R_31440001 RAL-738 2329 chr3R 31450793 31450817 chr3R 31450890 31450906 5 94 15.5 10.0 12.8 0.4 113 chr3R 31450793 intron Gprk2 + chr3R 31450850 intron Gprk2 + chr3R 31450906 intron Gprk2 + chr3R_5_31450001 chr3R_31450001 RAL-738 2330 chr3R 31530824 31530844 chr3R 31531151 31531171 4 326 15.5 13.5 14.5 0.3 347 chr3R 31530824 intergenic not near genes chr3R 31530998 intergenic not near genes chr3R 31531171 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-738 2331 chr3R 31606141 31606159 chr3R 31606303 31606311 4 159 20.5 10.0 15.2 0.2 170 chr3R 31606141 intron CycG - chr3R 31606226 intron CycG - chr3R 31606311 intron CycG - chr3R_4_31605001 chr3R_31605001 RAL-738 2332 chr3R 31610116 31610143 chr3R 31610202 31610229 9 84 12.0 11.5 11.8 0.7 113 chr3R 31610116 intron CycG - chr3R 31610172 intron CycG - chr3R 31610229 intron CycG - chr3R_9_31610001 chr3R_31610001 RAL-738 2333 chr3R 31630069 31630082 chr3R 31630171 31630187 4 104 17.5 16.0 16.8 0.2 118 chr3R 31630069 intron kek6 + chr3R 31630128 intron kek6 + chr3R 31630187 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-738 2334 chr3R 31691531 31691563 chr3R 31696296 31696314 Doc 17 4763 5.0 10.0 7.5 2.0 4783 chr3R 31691531 intergenic not near genes chr3R 31693922 intergenic not near genes chr3R 31696314 intergenic not near genes chr3R_17_31690001 chr3R_31690001 RAL-738 2335 chr3R 31726667 31726691 chr3R 31726752 31726762 8 83 12.5 19.0 15.8 0.5 95 chr3R 31726667 intron ttk + chr3R 31726714 intron ttk + chr3R 31726762 intron ttk + chr3R_8_31725001 chr3R_31725001 RAL-738 2336 chr3R 31769172 31769192 chr3R 31769288 31769299 6 114 16.0 10.5 13.2 0.4 127 chr3R 31769172 5` UTR pncr017:3R + chr3R 31769236 5` UTR pncr017:3R + chr3R 31769299 5` UTR,3` UTR pncr017:3R +,CG2135 - chr3R_6_31765001 chr3R_31765001 RAL-738 2337 chr3R 31911678 31911803 chr3R 31911764 31911863 12 80 13.5 14.0 13.8 0.8 185 chr3R 31911678 intron heph - chr3R 31911770 intron heph - chr3R 31911863 intron heph - chr3R_12_31910001 chr3R_31910001 RAL-738 2338 chr3R 31931199 31931208 chr3R 31931282 31931291 6 83 4.0 3.0 3.5 1.3 92 chr3R 31931199 intron heph - chr3R 31931245 intron heph - chr3R 31931291 intron heph - chr3R_6_31930001 chr3R_31930001 RAL-738 2339 chr3R 31997996 31998019 chr3R 32005460 32005489 blood 9 7469 4.0 3.0 3.5 2.0 7493 chr3R 31997996 intron heph - chr3R 32001742 intron heph - chr3R 32005489 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-738 2340 chr3R 32010008 32010019 chr3R 32010114 32010144 4 111 9.0 16.0 12.5 0.3 136 chr3R 32010008 intron heph - chr3R 32010076 intron heph - chr3R 32010144 intron heph - chr3R_4_32010001 chr3R_32010001 RAL-738 2341 chr3R 32013272 32013308 chr3R 32013390 32013426 8 116 11.5 8.0 9.8 0.7 154 chr3R 32013272 intron,5` UTR heph -,CR45556 + chr3R 32013349 intron,5` UTR heph -,CR45556 + chr3R 32013426 intron heph - chr3R_8_32010001 chr3R_32010001 RAL-738 2342 chr3R 32039963 32039995 chr3R 32040064 32040096 6 100 9.0 7.0 8.0 0.7 133 chr3R 32039963 intergenic CG2053 + chr3R 32040030 intergenic CG2053 + chr3R 32040096 intergenic CG2053 + chr3R_6_32040001 chr3R_32040001 RAL-738 2343 chr3R 32047177 32047194 chr3R 32047430 32047447 6 253 7.0 7.5 7.2 0.7 270 chr3R 32047177 3` UTR krz - chr3R 32047312 3` UTR krz - chr3R 32047447 3` UTR krz - chr3R_6_32045001 chr3R_32045001 RAL-738 2344 chr4 204839 204866 chr4 205102 205129 INE-1 7 263 2.5 2.5 2.5 2.0 290 chr4 204839 intron CG31998 - chr4 204984 intron CG31998 - chr4 205129 intron CG31998 - chr4_7_200001 chr4_200001 RAL-738 2345 chr4 257406 257437 chr4 257576 257607 16 167 2.5 3.5 3.0 4.0 201 chr4 257406 intron RhoGAP102A + chr4 257506 intron RhoGAP102A + chr4 257607 intron RhoGAP102A + chr4_16_255001 chr4_255001 RAL-738 2346 chr4 280806 280834 chr4 281436 281464 5 629 3.5 3.0 3.2 1.2 658 chr4 280806 intron Syt7 - chr4 281135 intron Syt7 - chr4 281464 intron Syt7 - chr4_5_280001 chr4_280001 RAL-738 2347 chr4 319996 320022 chr4 328172 328191 Stalker2 6 8175 2.0 1.5 1.8 2.1 8195 chr4 319996 3` UTR CG32850 + chr4 324094 intron CG32850 + chr4 328191 3` UTR CG32850 + chr4_6_320001 chr4_320001 RAL-738 2348 chr4 671609 671635 chr4 680186 680218 Tirant 14 8577 8.0 8.0 8.0 1.6 8609 chr4 671609 intron CG11360 + chr4 675914 intron CG11360 + chr4 680218 intron CG11360 + chr4_14_675001 chr4_675001 RAL-738 2349 chr4 726665 726697 chr4 726755 726787 7 90 7.5 2.0 4.8 1.2 122 chr4 726665 intron bt + chr4 726726 intron bt + chr4 726787 intron bt + chr4_7_725001 chr4_725001 RAL-738 2350 chr4 959625 959655 chr4 959800 959823 13 176 2.5 7.5 5.0 2.2 198 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959724 5` UTR CR44030 + chr4 959823 5` UTR CR44030 + chr4_13_955001 chr4_955001 RAL-738 2351 chr4 972492 972527 chr4 972574 972609 7 81 3.5 1.0 2.2 2.2 117 chr4 972492 intron fuss - chr4 972550 intron fuss - chr4 972609 intron fuss - chr4_7_970001 chr4_970001 RAL-738 2352 chrX 295863 295881 chrX 303483 303501 412 6 7620 1.5 6.5 4.0 1.2 7638 chrX 295863 intron CG3777 + chrX 299682 intron CG3777 + chrX 303501 intron CG3777 + chrX_6_295001 chrX_295001 RAL-738 2353 chrX 318486 318500 chrX 323555 323586 flea 7 5084 3.5 7.0 5.2 1.1 5100 chrX 318486 intron,intron CG3777 +,CG32816 - chrX 321036 intron,intron CG3777 +,CG32816 - chrX 323586 intron,intron CG3777 +,CG32816 - chrX_7_320001 chrX_320001 RAL-738 2354 chrX 405555 405569 chrX 407791 407806 7 2237 21.0 16.0 18.5 0.4 2251 chrX 405555 intron CG32816 - chrX 406680 intron CG32816 - chrX 407806 intron CG32816 - chrX_7_405001 chrX_405001 RAL-738 2355 chrX 405357 405388 chrX 407869 407900 5 2513 19.0 21.0 20.0 0.2 2543 chrX 405357 intron CG32816 - chrX 406628 intron CG32816 - chrX 407900 intron CG32816 - chrX_5_405001 chrX_405001 RAL-738 2356 chrX 428419 428449 chrX 434604 434634 3S18 10 6183 7.0 2.5 4.8 1.7 6215 chrX 428419 intron CG32816 - chrX 431526 intron CG32816 - chrX 434634 intron CG32816 - chrX_10_430001 chrX_430001 RAL-738 2357 chrX 494601 494633 chrX 494693 494725 6 89 5.0 4.5 4.8 1.0 124 chrX 494601 intergenic CG17778 + chrX 494663 5` UTR CG17778 + chrX 494725 intron CG17778 + chrX_6_490001 chrX_490001 RAL-738 2358 chrX 547631 547666 chrX 547875 547910 21 242 2.0 5.0 3.5 4.7 279 chrX 547631 intron Appl + chrX 547770 intron Appl + chrX 547910 intron Appl + chrX_21_545001 chrX_545001 RAL-738 2359 chrX 551435 551449 chrX 558991 559011 412 4 7560 6.0 8.5 7.2 0.5 7576 chrX 551435 intron Appl + chrX 555223 intron Appl + chrX 559011 intron Appl + chrX_4_555001 chrX_555001 RAL-738 2360 chrX 611135 611168 chrX 611225 611235 18 88 2.5 4.5 3.5 4.0 100 chrX 611135 intron CG13366 - chrX 611185 intron CG13366 - chrX 611235 intron CG13366 - chrX_18_610001 chrX_610001 RAL-738 2361 chrX 667648 667684 chrX 667732 667767 10 81 0.5 1.5 1.0 5.0 119 chrX 667648 intergenic not near genes chrX 667708 intergenic not near genes chrX 667767 intergenic not near genes chrX_10_665001 chrX_665001 RAL-738 2362 chrX 670263 670294 chrX 670343 670374 4 79 1.5 3.0 2.2 1.2 111 chrX 670263 intergenic not near genes chrX 670318 intergenic not near genes chrX 670374 intergenic not near genes chrX_4_670001 chrX_670001 RAL-738 2363 chrX 680838 680868 chrX 680920 680939 11 81 4.0 3.5 3.8 2.3 101 chrX 680838 intergenic not near genes chrX 680888 intergenic not near genes chrX 680939 intergenic not near genes chrX_11_680001 chrX_680001 RAL-738 2364 chrX 695292 695305 chrX 695369 695382 7 76 10.0 5.0 7.5 0.8 90 chrX 695292 intron sdk + chrX 695337 intron sdk + chrX 695382 intron sdk + chrX_7_695001 chrX_695001 RAL-738 2365 chrX 695309 695325 chrX 695367 695401 15 73 3.5 5.0 4.2 2.9 92 chrX 695309 intron sdk + chrX 695355 intron sdk + chrX 695401 intron sdk + chrX_15_695001 chrX_695001 RAL-738 2366 chrX 706814 706818 chrX 707168 707182 4 361 0.5 8.5 4.5 0.7 368 chrX 706814 intron sdk + chrX 706998 intron sdk + chrX 707182 intron sdk + chrX_4_705001 chrX_705001 RAL-738 2367 chrX 706819 706829 chrX 707162 707192 7 354 0.5 7.0 3.8 1.5 373 chrX 706819 intron sdk + chrX 707006 intron sdk + chrX 707192 intron sdk + chrX_7_705001 chrX_705001 RAL-738 2368 chrX 778132 778160 chrX 778215 778248 13 86 4.0 1.5 2.8 3.4 116 chrX 778132 intron fz3 + chrX 778190 intron fz3 + chrX 778248 intron fz3 + chrX_13_775001 chrX_775001 RAL-738 2369 chrX 780595 780601 chrX 780671 780677 6 75 6.5 0.5 3.5 1.3 82 chrX 780595 intron fz3 + chrX 780636 intron fz3 + chrX 780677 intron fz3 + chrX_6_780001 chrX_780001 RAL-738 2370 chrX 802286 802321 chrX 802362 802398 9 73 6.0 8.0 7.0 1.1 112 chrX 802286 exon CG13359 - chrX 802342 exon CG13359 - chrX 802398 exon CG13359 - chrX_9_800001 chrX_800001 RAL-738 2371 chrX 806787 806809 chrX 806883 806905 6 96 5.5 3.0 4.2 1.2 118 chrX 806787 intron Sec22 + chrX 806846 intron Sec22 + chrX 806905 intron Sec22 + chrX_6_805001 chrX_805001 RAL-738 2372 chrX 827609 827625 chrX 835401 835417 roo 8 7791 9.0 12.0 10.5 0.7 7808 chrX 827609 intron CG43867 - chrX 831513 intron CG43867 - chrX 835417 intron CG43867 - chrX_8_830001 chrX_830001 RAL-738 2373 chrX 827626 827634 chrX 835400 835403 roo 4 7782 8.0 11.5 9.8 0.4 7777 chrX 827626 intron CG43867 - chrX 831514 intron CG43867 - chrX 835403 intron CG43867 - chrX_4_830001 chrX_830001 RAL-738 2374 chrX 890646 890666 chrX 890724 890754 6 83 4.0 0.5 2.2 1.9 108 chrX 890646 intron CG43867 - chrX 890700 intron CG43867 - chrX 890754 intron CG43867 - chrX_6_890001 chrX_890001 RAL-738 2375 chrX 891536 891546 chrX 891989 892004 6 457 4.0 6.5 5.2 1.0 468 chrX 891536 intron CG43867 - chrX 891770 intron CG43867 - chrX 892004 intron CG43867 - chrX_6_890001 chrX_890001 RAL-738 2376 chrX 906702 906734 chrX 908491 908523 S-element 14 1785 5.5 10.0 7.8 1.6 1821 chrX 906702 intron CG43867 - chrX 907612 intron CG43867 - chrX 908523 intron CG43867 - chrX_14_905001 chrX_905001 RAL-738 2377 chrX 1004110 1004128 chrX 1004405 1004422 4 294 0.5 5.0 2.8 1.1 312 chrX 1004110 intergenic not near genes chrX 1004266 intergenic not near genes chrX 1004422 intergenic not near genes chrX_4_1000001 chrX_1000001 RAL-738 2378 chrX 1163302 1163321 chrX 1163380 1163399 9 78 5.5 3.5 4.5 1.6 97 chrX 1163302 intergenic CG34320 - chrX 1163350 intergenic CG34320 - chrX 1163399 intergenic CG34320 - chrX_9_1160001 chrX_1160001 RAL-738 2379 chrX 1253731 1253745 chrX 1253813 1253827 4 82 6.5 7.0 6.8 0.5 96 chrX 1253731 intron Atf3 - chrX 1253779 intron Atf3 - chrX 1253827 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-738 2380 chrX 1253747 1253763 chrX 1253812 1253829 13 76 5.0 6.5 5.8 1.9 82 chrX 1253747 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253829 intron Atf3 - chrX_13_1250001 chrX_1250001 RAL-738 2381 chrX 1357778 1357811 chrX 1367948 1367958 Doc 9 10167 5.5 4.5 5.0 1.5 10180 chrX 1357778 intergenic png - chrX 1362868 intergenic not near genes chrX 1367958 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-738 2382 chrX 1518036 1518077 chrX 1523438 1523454 jockey 13 5394 5.5 8.5 7.0 1.6 5418 chrX 1518036 intergenic inc + chrX 1520745 intergenic not near genes chrX 1523454 intergenic not near genes chrX_13_1520001 chrX_1520001 RAL-738 2383 chrX 1627980 1628002 chrX 1635448 1635451 gtwin 9 7465 4.0 5.5 4.8 1.6 7471 chrX 1627980 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635451 intron,intron Mur2B -,br + chrX_9_1630001 chrX_1630001 RAL-738 2384 chrX 1762634 1762657 chrX 1762718 1762742 8 85 2.0 7.5 4.8 1.4 108 chrX 1762634 intergenic not near genes chrX 1762688 intergenic not near genes chrX 1762742 intergenic not near genes chrX_8_1760001 chrX_1760001 RAL-738 2385 chrX 1930562 1930569 chrX 1938111 1938140 opus 6 7566 1.0 2.5 1.8 2.1 7578 chrX 1930562 intergenic CG11596 + chrX 1934351 intergenic not near genes chrX 1938140 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-738 2386 chrX 2164375 2164407 chrX 2164461 2164479 10 82 7.0 3.5 5.2 1.6 104 chrX 2164375 intron CG3630 + chrX 2164427 intron CG3630 + chrX 2164479 intron CG3630 + chrX_10_2160001 chrX_2160001 RAL-738 2387 chrX 2187589 2187622 chrX 2188350 2188383 12 761 35.5 21.0 28.2 0.4 794 chrX 2187589 3` UTR CG17777 + chrX 2187986 exon CG3457 + chrX 2188383 exon CG3457 + chrX_12_2185001 chrX_2185001 RAL-738 2388 chrX 2399853 2399871 chrX 2408189 2408189 roo 6 8337 3.0 2.5 2.8 1.6 8336 chrX 2399853 intergenic not near genes chrX 2404021 intergenic not near genes chrX 2408189 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-738 2389 chrX 2429650 2429658 chrX 2429731 2429738 6 81 0.0 1.0 0.5 4.0 88 chrX 2429650 intergenic not near genes chrX 2429694 intergenic not near genes chrX 2429738 intergenic not near genes chrX_6_2425001 chrX_2425001 RAL-738 2390 chrX 2552801 2552832 chrX 2552925 2552927 9 119 2.0 4.5 3.2 2.1 126 chrX 2552801 intron Pdfr + chrX 2552864 intron Pdfr + chrX 2552927 intron Pdfr + chrX_9_2550001 chrX_2550001 RAL-738 2391 chrX 2578818 2578837 chrX 2578910 2578929 6 91 4.5 6.0 5.2 1.0 111 chrX 2578818 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578929 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-738 2392 chrX 2610383 2610397 chrX 2617500 2617514 HMS-Beagle 4 7117 10.0 2.5 6.2 0.6 7131 chrX 2610383 intergenic CG8636 - chrX 2613948 intergenic not near genes chrX 2617514 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-738 2393 chrX 2844899 2844932 chrX 2852307 2852319 mdg1 9 7407 4.5 1.0 2.8 2.4 7420 chrX 2844899 intron kirre + chrX 2848609 intron kirre + chrX 2852319 intron kirre + chrX_9_2845001 chrX_2845001 RAL-738 2394 chrX 2877042 2877073 chrX 2877144 2877157 9 100 4.0 3.0 3.5 2.0 115 chrX 2877042 intron kirre + chrX 2877100 intron kirre + chrX 2877157 intron kirre + chrX_9_2875001 chrX_2875001 RAL-738 2395 chrX 2934518 2934547 chrX 2934602 2934630 6 84 3.0 1.0 2.0 2.0 112 chrX 2934518 intron kirre + chrX 2934574 intron kirre + chrX 2934630 intron kirre + chrX_6_2930001 chrX_2930001 RAL-738 2396 chrX 3058021 3058044 chrX 3058262 3058285 pogo 8 241 3.0 2.5 2.8 2.1 264 chrX 3058021 intron kirre + chrX 3058153 intron kirre + chrX 3058285 intron kirre + chrX_8_3055001 chrX_3055001 RAL-738 2397 chrX 3109445 3109473 chrX 3109522 3109550 9 75 5.5 4.0 4.8 1.6 105 chrX 3109445 intron kirre + chrX 3109498 intron kirre + chrX 3109550 intron kirre + chrX_9_3105001 chrX_3105001 RAL-738 2398 chrX 3243625 3243666 chrX 3243715 3243746 16 89 1.5 4.0 2.8 4.2 121 chrX 3243625 intron dnc + chrX 3243686 intron dnc + chrX 3243746 intron dnc + chrX_16_3240001 chrX_3240001 RAL-738 2399 chrX 3306343 3306361 chrX 3306425 3306443 8 82 1.5 0.0 0.8 4.4 100 chrX 3306343 intron dnc + chrX 3306393 intron dnc + chrX 3306443 intron dnc + chrX_8_3305001 chrX_3305001 RAL-738 2400 chrX 3322649 3322660 chrX 3322724 3322736 5 76 3.0 5.5 4.2 1.0 87 chrX 3322649 intron,intron dnc +,CR44886 - chrX 3322692 intron,intron dnc +,CR44886 - chrX 3322736 intron,intron dnc +,CR44886 - chrX_5_3320001 chrX_3320001 RAL-738 2401 chrX 3346002 3346027 chrX 3346091 3346092 7 85 4.5 2.0 3.2 1.7 90 chrX 3346002 intron CR44886 - chrX 3346047 intron CR44886 - chrX 3346092 intron CR44886 - chrX_7_3345001 chrX_3345001 RAL-738 2402 chrX 3408986 3409018 chrX 3409063 3409094 14 74 0.5 3.5 2.0 4.7 108 chrX 3408986 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_14_3405001 chrX_3405001 RAL-738 2403 chrX 3415019 3415046 chrX 3421204 3421231 3S18 8 6184 1.0 3.5 2.2 2.5 6212 chrX 3415019 intron,intron CR44999 +,CG12535 - chrX 3418125 intron,intron CR44999 +,CG12535 - chrX 3421231 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-738 2404 chrX 3493090 3493120 chrX 3502249 3502279 roo 9 9158 3.5 1.5 2.5 2.6 9189 chrX 3493090 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502279 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-738 2405 chrX 3597550 3597582 chrX 3619718 3619749 roo 15 22164 6.0 1.5 3.8 3.1 22199 chrX 3597550 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_15_3605001 chrX_3605001 RAL-738 2406 chrX 3683883 3683903 chrX 3683986 3683988 4 93 7.0 5.0 6.0 0.6 105 chrX 3683883 intron Mnt + chrX 3683936 intron Mnt + chrX 3683988 intron Mnt + chrX_4_3680001 chrX_3680001 RAL-738 2407 chrX 3703709 3703735 chrX 3703797 3703808 6 82 3.0 3.0 3.0 1.5 99 chrX 3703709 intergenic CR45102 + chrX 3703758 intergenic CR45102 + chrX 3703808 intergenic not near genes chrX_6_3700001 chrX_3700001 RAL-738 2408 chrX 3713100 3713137 chrX 3713208 3713246 10 107 1.5 3.5 2.5 2.9 146 chrX 3713100 intron Rala - chrX 3713173 intron Rala - chrX 3713246 intron Rala - chrX_10_3710001 chrX_3710001 RAL-738 2409 chrX 3726762 3726795 chrX 3730159 3730176 NOF 5 3389 1.5 3.0 2.2 1.6 3414 chrX 3726762 intron tlk + chrX 3728469 intron tlk + chrX 3730176 intron tlk + chrX_5_3725001 chrX_3725001 RAL-738 2410 chrX 3814704 3814737 chrX 3815595 3815627 19 887 4.0 1.5 2.8 5.0 923 chrX 3814704 intron ec + chrX 3815166 intron ec + chrX 3815627 intron ec + chrX_19_3815001 chrX_3815001 RAL-738 2411 chrX 3817098 3817106 chrX 3817183 3817192 4 86 0.5 10.0 5.2 0.6 94 chrX 3817098 intron ec + chrX 3817145 intron ec + chrX 3817192 intron ec + chrX_4_3815001 chrX_3815001 RAL-738 2412 chrX 3847231 3847234 chrX 3847350 3847360 5 125 8.5 5.0 6.8 0.6 129 chrX 3847231 intron ec + chrX 3847296 intron ec + chrX 3847360 intron ec + chrX_5_3845001 chrX_3845001 RAL-738 2413 chrX 3847236 3847253 chrX 3847348 3847380 10 126 5.5 4.5 5.0 1.7 144 chrX 3847236 intron ec + chrX 3847308 intron ec + chrX 3847380 intron ec + chrX_10_3845001 chrX_3845001 RAL-738 2414 chrX 3862828 3862844 chrX 3862900 3862923 6 80 4.5 3.0 3.8 1.2 95 chrX 3862828 intergenic yin - chrX 3862876 intergenic yin - chrX 3862923 intergenic yin - chrX_6_3860001 chrX_3860001 RAL-738 2415 chrX 3866106 3866136 chrX 3866184 3866214 16 72 3.5 3.0 3.2 3.8 108 chrX 3866106 intron yin - chrX 3866160 intron yin - chrX 3866214 intron yin - chrX_16_3865001 chrX_3865001 RAL-738 2416 chrX 3881272 3881305 chrX 3881408 3881444 9 136 5.0 1.0 3.0 2.2 172 chrX 3881272 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881444 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-738 2417 chrX 3986885 3986896 chrX 3994518 3994529 412 4 7633 6.5 0.5 3.5 0.9 7644 chrX 3986885 intergenic not near genes chrX 3990707 intergenic not near genes chrX 3994529 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-738 2418 chrX 4018459 4018481 chrX 4018860 4018884 7 399 4.0 4.5 4.2 1.3 425 chrX 4018459 intergenic not near genes chrX 4018672 intergenic not near genes chrX 4018884 intergenic not near genes chrX_7_4015001 chrX_4015001 RAL-738 2419 chrX 4101894 4101897 chrX 4101953 4101977 5 75 1.5 4.0 2.8 1.3 83 chrX 4101894 exon CG15375 + chrX 4101936 exon CG15375 + chrX 4101977 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-738 2420 chrX 4132674 4132695 chrX 4132842 4132863 10 167 5.5 2.0 3.8 2.1 189 chrX 4132674 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132863 intergenic Fas2 -,GlcAT-I + chrX_10_4130001 chrX_4130001 RAL-738 2421 chrX 4203516 4203547 chrX 4203596 4203626 5 80 3.0 3.0 3.0 1.2 110 chrX 4203516 intron Fas2 - chrX 4203571 intron Fas2 - chrX 4203626 intron Fas2 - chrX_5_4200001 chrX_4200001 RAL-738 2422 chrX 4214333 4214358 chrX 4214409 4214412 6 72 4.0 0.5 2.2 1.9 79 chrX 4214333 intergenic not near genes chrX 4214372 intergenic not near genes chrX 4214412 intergenic not near genes chrX_6_4210001 chrX_4210001 RAL-738 2423 chrX 4240175 4240208 chrX 4240302 4240335 15 125 4.5 6.5 5.5 2.3 160 chrX 4240175 intergenic not near genes chrX 4240255 intergenic not near genes chrX 4240335 intergenic not near genes chrX_15_4240001 chrX_4240001 RAL-738 2424 chrX 4267317 4267350 chrX 4267395 4267430 13 78 1.0 5.0 3.0 3.2 113 chrX 4267317 intergenic not near genes chrX 4267374 intergenic not near genes chrX 4267430 intergenic not near genes chrX_13_4265001 chrX_4265001 RAL-738 2425 chrX 4276475 4276512 chrX 4276554 4276591 8 71 2.5 3.5 3.0 2.0 116 chrX 4276475 intergenic CG15577 - chrX 4276533 3` UTR CG15577 - chrX 4276591 3` UTR CG15577 - chrX_8_4275001 chrX_4275001 RAL-738 2426 chrX 4296118 4296149 chrX 4296194 4296225 9 73 4.5 5.0 4.8 1.6 107 chrX 4296118 intergenic not near genes chrX 4296172 intergenic not near genes chrX 4296225 intergenic not near genes chrX_9_4295001 chrX_4295001 RAL-738 2427 chrX 4324391 4324406 chrX 4324468 4324483 5 77 3.5 5.5 4.5 0.9 92 chrX 4324391 intron norpA + chrX 4324437 intron norpA + chrX 4324483 intron norpA + chrX_5_4320001 chrX_4320001 RAL-738 2428 chrX 4358088 4358123 chrX 4358190 4358225 8 101 3.5 0.0 1.8 2.9 137 chrX 4358088 intron norpA + chrX 4358156 intron norpA + chrX 4358225 intron norpA + chrX_8_4355001 chrX_4355001 RAL-738 2429 chrX 4361449 4361470 chrX 4361528 4361549 6 73 1.5 3.0 2.2 1.9 100 chrX 4361449 intron norpA + chrX 4361499 intron norpA + chrX 4361549 intron norpA + chrX_6_4360001 chrX_4360001 RAL-738 2430 chrX 4613561 4613574 chrX 4613632 4613653 7 78 6.5 7.5 7.0 0.9 92 chrX 4613561 intergenic not near genes chrX 4613607 intergenic not near genes chrX 4613653 intergenic not near genes chrX_7_4610001 chrX_4610001 RAL-738 2431 chrX 4700410 4700423 chrX 4700753 4700766 jockey 5 343 5.5 5.5 5.5 0.8 356 chrX 4700410 3` UTR ctp + chrX 4700588 3` UTR ctp + chrX 4700766 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-738 2432 chrX 4717373 4717387 chrX 4717874 4717902 7 514 3.5 3.5 3.5 1.6 529 chrX 4717373 intron Proc-R + chrX 4717638 intron Proc-R + chrX 4717902 intron Proc-R + chrX_7_4715001 chrX_4715001 RAL-738 2433 chrX 4723574 4723582 chrX 4723654 4723661 5 80 10.0 3.0 6.5 0.7 87 chrX 4723574 intron Proc-R + chrX 4723618 intron Proc-R + chrX 4723661 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-738 2434 chrX 4731825 4731845 chrX 4736907 4736908 jockey 6 5082 7.0 3.0 5.0 1.0 5083 chrX 4731825 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736908 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-738 2435 chrX 4744158 4744173 chrX 4744256 4744271 5 98 3.0 1.5 2.2 1.6 113 chrX 4744158 intergenic not near genes chrX 4744214 intergenic not near genes chrX 4744271 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-738 2436 chrX 4763251 4763284 chrX 4763739 4763772 Stalker4 11 481 3.5 4.5 4.0 2.2 521 chrX 4763251 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763772 intergenic not near genes chrX_11_4760001 chrX_4760001 RAL-738 2437 chrX 4792382 4792408 chrX 4792815 4792818 jockey 8 428 5.5 5.0 5.2 1.3 436 chrX 4792382 intergenic not near genes chrX 4792600 intergenic not near genes chrX 4792818 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-738 2438 chrX 4827976 4827993 chrX 4835347 4835351 Stalker4 5 7368 5.0 7.0 6.0 0.7 7375 chrX 4827976 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835351 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-738 2439 chrX 4827994 4827998 chrX 4835342 4835352 Stalker4 4 7361 5.0 7.0 6.0 0.6 7358 chrX 4827994 intergenic not near genes chrX 4831673 intergenic not near genes chrX 4835352 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-738 2440 chrX 4871206 4871229 chrX 4871306 4871329 8 96 6.0 4.5 5.2 1.3 123 chrX 4871206 intron CG42594 + chrX 4871268 intron CG42594 + chrX 4871329 intron CG42594 + chrX_8_4870001 chrX_4870001 RAL-738 2441 chrX 4965555 4965587 chrX 4965635 4965656 13 77 3.0 3.0 3.0 3.2 101 chrX 4965555 intron CR44833 - chrX 4965606 intron CR44833 - chrX 4965656 intron CR44833 - chrX_13_4965001 chrX_4965001 RAL-738 2442 chrX 4975581 4975611 chrX 4975758 4975788 8 177 6.5 1.0 3.8 1.7 207 chrX 4975581 intron CR44833 - chrX 4975684 intron CR44833 - chrX 4975788 intron CR44833 - chrX_8_4975001 chrX_4975001 RAL-738 2443 chrX 4990042 4990075 chrX 4997256 4997289 roo 14 7214 6.5 6.5 6.5 1.9 7247 chrX 4990042 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997289 intron CR44833 - chrX_14_4990001 chrX_4990001 RAL-738 2444 chrX 5096274 5096306 chrX 5103839 5103871 springer 16 7564 4.0 5.5 4.8 2.8 7597 chrX 5096274 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_16_5100001 chrX_5100001 RAL-738 2445 chrX 5122839 5122852 chrX 5123051 5123081 7 219 0.5 6.0 3.2 1.7 242 chrX 5122839 intron,intron CG15465 +,rg + chrX 5122960 intron,intron CG15465 +,rg + chrX 5123081 intron,intron CG15465 +,rg + chrX_7_5120001 chrX_5120001 RAL-738 2446 chrX 5206303 5206329 chrX 5206576 5206601 10 271 1.5 3.5 2.5 2.9 298 chrX 5206303 intron,intron CG15465 +,rg + chrX 5206452 intron,intron CG15465 +,rg + chrX 5206601 intron,intron CG15465 +,rg + chrX_10_5205001 chrX_5205001 RAL-738 2447 chrX 5206330 5206333 chrX 5206575 5206606 4 254 1.5 3.5 2.5 1.1 276 chrX 5206330 intron,intron CG15465 +,rg + chrX 5206468 intron,intron CG15465 +,rg + chrX 5206606 intron,intron CG15465 +,rg + chrX_4_5205001 chrX_5205001 RAL-738 2448 chrX 5211478 5211490 chrX 5211715 5211727 4 237 0.5 7.0 3.8 0.8 249 chrX 5211478 intron,intron CG15465 +,rg + chrX 5211602 intron,intron CG15465 +,rg + chrX 5211727 intron,intron CG15465 +,rg + chrX_4_5210001 chrX_5210001 RAL-738 2449 chrX 5323071 5323079 chrX 5323332 5323339 4 261 3.5 0.0 1.8 1.4 268 chrX 5323071 intergenic Rnp4F - chrX 5323205 intergenic not near genes chrX 5323339 intergenic not near genes chrX_4_5320001 chrX_5320001 RAL-738 2450 chrX 5349280 5349310 chrX 5349357 5349386 14 76 1.0 4.0 2.5 4.0 106 chrX 5349280 intron SK + chrX 5349333 intron SK + chrX 5349386 intron SK + chrX_14_5345001 chrX_5345001 RAL-738 2451 chrX 5441993 5442016 chrX 5442094 5442124 6 106 4.5 2.5 3.5 1.3 131 chrX 5441993 intergenic not near genes chrX 5442058 intergenic not near genes chrX 5442124 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-738 2452 chrX 5473588 5473615 chrX 5473664 5473677 8 72 3.5 3.0 3.2 1.9 89 chrX 5473588 intron SPR + chrX 5473632 intron SPR + chrX 5473677 intron SPR + chrX_8_5470001 chrX_5470001 RAL-738 2453 chrX 5524841 5524870 chrX 5528704 5528728 412 7 3861 7.5 2.5 5.0 1.2 3887 chrX 5524841 intergenic snoRNA:Psi28S-3342 - chrX 5526784 intergenic not near genes chrX 5528728 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-738 2454 chrX 5704692 5704697 chrX 5704777 5704784 4 85 8.5 4.5 6.5 0.5 92 chrX 5704692 exon CG4096 + chrX 5704738 intron CG4096 + chrX 5704784 intron CG4096 + chrX_4_5700001 chrX_5700001 RAL-738 2455 chrX 5704702 5704711 chrX 5704775 5704785 5 80 5.0 4.0 4.5 0.9 83 chrX 5704702 exon CG4096 + chrX 5704744 intron CG4096 + chrX 5704785 intron CG4096 + chrX_5_5700001 chrX_5700001 RAL-738 2456 chrX 5786579 5786607 chrX 5786657 5786674 9 78 4.0 2.5 3.2 2.1 95 chrX 5786579 intron CG42699 + chrX 5786626 intron CG42699 + chrX 5786674 intron CG42699 + chrX_9_5785001 chrX_5785001 RAL-738 2457 chrX 5798869 5798891 chrX 5799025 5799033 5 157 2.0 4.0 3.0 1.2 164 chrX 5798869 intergenic not near genes chrX 5798951 intergenic not near genes chrX 5799033 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-738 2458 chrX 5883816 5883838 chrX 5884057 5884079 pogo 4 241 3.0 5.5 4.2 0.8 263 chrX 5883816 intron CR45668 - chrX 5883948 intron CR45668 - chrX 5884079 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-738 2459 chrX 5884165 5884191 chrX 5884401 5884408 pogo 9 235 2.5 5.0 3.8 1.9 243 chrX 5884165 intron CR45668 - chrX 5884286 intron CR45668 - chrX 5884408 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-738 2460 chrX 6003281 6003309 chrX 6003362 6003390 12 81 0.5 3.5 2.0 4.0 109 chrX 6003281 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003390 intron CR44498 + chrX_12_6000001 chrX_6000001 RAL-738 2461 chrX 6009253 6009275 chrX 6009593 6009595 6 337 2.5 5.5 4.0 1.2 342 chrX 6009253 intron mab-21 - chrX 6009424 intron mab-21 - chrX 6009595 intron mab-21 - chrX_6_6005001 chrX_6005001 RAL-738 2462 chrX 6115893 6115924 chrX 6116030 6116060 9 136 2.5 3.0 2.8 2.4 167 chrX 6115893 intron Ca-alpha1T - chrX 6115976 intron Ca-alpha1T - chrX 6116060 intron Ca-alpha1T - chrX_9_6115001 chrX_6115001 RAL-738 2463 chrX 6168102 6168120 chrX 6168181 6168185 5 76 6.5 3.5 5.0 0.8 83 chrX 6168102 intron Ca-alpha1T - chrX 6168144 intron Ca-alpha1T - chrX 6168185 intron Ca-alpha1T - chrX_5_6165001 chrX_6165001 RAL-738 2464 chrX 6171582 6171617 chrX 6179015 6179050 Quasimodo 12 7432 3.0 3.0 3.0 3.0 7468 chrX 6171582 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_12_6175001 chrX_6175001 RAL-738 2465 chrX 6215339 6215371 chrX 6215422 6215454 16 82 0.5 6.5 3.5 3.6 115 chrX 6215339 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215454 intergenic not near genes chrX_16_6215001 chrX_6215001 RAL-738 2466 chrX 6335233 6335244 chrX 6337733 6337754 Tirant 5 2505 1.0 8.5 4.8 0.9 2521 chrX 6335233 intergenic not near genes chrX 6336494 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-738 2467 chrX 6392880 6392903 chrX 6397628 6397662 Doc 7 4758 2.0 5.0 3.5 1.6 4782 chrX 6392880 intergenic not near genes chrX 6395271 intergenic not near genes chrX 6397662 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-738 2468 chrX 6552884 6552913 chrX 6552960 6552963 4 66 2.5 0.0 1.2 1.8 79 chrX 6552884 exon CG34417 + chrX 6552924 exon CG34417 + chrX 6552963 exon CG34417 + chrX_4_6550001 chrX_6550001 RAL-738 2469 chrX 6562831 6562850 chrX 6571298 6571300 Tirant 7 8471 5.0 5.0 5.0 1.2 8469 chrX 6562831 intron CG34417 + chrX 6567066 intron CG34417 + chrX 6571300 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-738 2470 chrX 6605479 6605506 chrX 6608501 6608528 Burdock 9 3022 3.0 6.0 4.5 1.6 3049 chrX 6605479 intron pigs + chrX 6607004 intron pigs + chrX 6608528 intron pigs + chrX_9_6605001 chrX_6605001 RAL-738 2471 chrX 6897688 6897707 chrX 6897798 6897800 4 106 4.0 3.5 3.8 0.8 112 chrX 6897688 intergenic not near genes chrX 6897744 intergenic not near genes chrX 6897800 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-738 2472 chrX 6976488 6976523 chrX 6976584 6976618 12 94 2.0 1.0 1.5 4.8 130 chrX 6976488 intron ogre - chrX 6976553 intron ogre - chrX 6976618 intron ogre - chrX_12_6975001 chrX_6975001 RAL-738 2473 chrX 7023601 7023633 chrX 7030991 7030992 Tabor 11 7386 7.5 3.5 5.5 1.7 7391 chrX 7023601 intron CG12541 - chrX 7027296 intron CG12541 - chrX 7030992 intron CG12541 - chrX_11_7025001 chrX_7025001 RAL-738 2474 chrX 7048629 7048658 chrX 7048704 7048736 10 71 5.0 2.0 3.5 2.2 107 chrX 7048629 intron CG12541 - chrX 7048682 intron CG12541 - chrX 7048736 intron CG12541 - chrX_10_7045001 chrX_7045001 RAL-738 2475 chrX 7061370 7061397 chrX 7061464 7061491 6 94 3.5 3.5 3.5 1.3 121 chrX 7061370 intron CG12541 - chrX 7061430 intron CG12541 - chrX 7061491 intron CG12541 - chrX_6_7060001 chrX_7060001 RAL-738 2476 chrX 7125255 7125264 chrX 7134414 7134423 roo 6 9159 2.0 6.0 4.0 1.2 9168 chrX 7125255 intergenic not near genes chrX 7129839 intergenic not near genes chrX 7134423 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-738 2477 chrX 7702510 7702524 chrX 7702602 7702615 7 89 0.0 8.0 4.0 1.4 105 chrX 7702510 intron CHES-1-like - chrX 7702562 intron CHES-1-like - chrX 7702615 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-738 2478 chrX 7702901 7702940 chrX 7703340 7703361 jockey 15 435 3.5 8.5 6.0 2.1 460 chrX 7702901 intron CHES-1-like - chrX 7703131 intron CHES-1-like - chrX 7703361 intron CHES-1-like - chrX_15_7700001 chrX_7700001 RAL-738 2479 chrX 7737136 7737143 chrX 7737248 7737255 4 112 4.5 3.0 3.8 0.8 119 chrX 7737136 5` UTR Tom40 + chrX 7737196 intron Tom40 + chrX 7737255 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-738 2480 chrX 7784236 7784248 chrX 7784538 7784544 jockey 6 300 3.5 6.5 5.0 1.0 308 chrX 7784236 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784544 intergenic not near genes chrX_6_7780001 chrX_7780001 RAL-738 2481 chrX 7832435 7832460 chrX 7832524 7832549 5 89 3.5 6.0 4.8 0.9 114 chrX 7832435 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832549 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-738 2482 chrX 7931592 7931606 chrX 7931677 7931691 4 85 8.0 5.0 6.5 0.5 99 chrX 7931592 intergenic CG10778 -,CG10777 - chrX 7931642 intergenic CG10778 -,CG10777 - chrX 7931691 intergenic CG10778 -,CG10777 - chrX_4_7930001 chrX_7930001 RAL-738 2483 chrX 8031433 8031463 chrX 8035742 8035754 Juan 12 4308 4.0 8.5 6.2 1.7 4321 chrX 8031433 intergenic not near genes chrX 8033594 intergenic not near genes chrX 8035754 3` UTR CG2233 - chrX_12_8030001 chrX_8030001 RAL-738 2484 chrX 8066576 8066595 chrX 8066658 8066667 8 79 0.5 0.0 0.2 6.7 91 chrX 8066576 intron mys + chrX 8066622 intron mys + chrX 8066667 intron mys + chrX_8_8065001 chrX_8065001 RAL-738 2485 chrX 8085575 8085599 chrX 8085661 8085685 9 84 5.0 4.0 4.5 1.6 110 chrX 8085575 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085685 intron,5` UTR CG2256 -,CR45535 + chrX_9_8085001 chrX_8085001 RAL-738 2486 chrX 8500928 8500960 chrX 8501092 8501092 8 160 1.0 0.5 0.8 4.4 164 chrX 8500928 intron CG33181 + chrX 8501010 intron CG33181 + chrX 8501092 intron CG33181 + chrX_8_8500001 chrX_8500001 RAL-738 2487 chrX 8506044 8506063 chrX 8506122 8506141 5 78 2.0 4.0 3.0 1.2 97 chrX 8506044 intron CG33181 + chrX 8506092 intron CG33181 + chrX 8506141 intron CG33181 + chrX_5_8505001 chrX_8505001 RAL-738 2488 chrX 8506531 8506558 chrX 8506739 8506754 7 206 1.0 2.0 1.5 2.8 223 chrX 8506531 intron CG33181 + chrX 8506642 intron CG33181 + chrX 8506754 intron CG33181 + chrX_7_8505001 chrX_8505001 RAL-738 2489 chrX 8730449 8730464 chrX 8730525 8730539 7 76 0.0 11.5 5.8 1.0 90 chrX 8730449 intergenic not near genes chrX 8730494 intergenic not near genes chrX 8730539 intergenic not near genes chrX_7_8730001 chrX_8730001 RAL-738 2490 chrX 8730465 8730472 chrX 8730514 8730534 8 70 1.0 8.5 4.8 1.4 69 chrX 8730465 intergenic not near genes chrX 8730500 intergenic not near genes chrX 8730534 intergenic not near genes chrX_8_8730001 chrX_8730001 RAL-738 2491 chrX 8826806 8826812 chrX 8826897 8826902 6 90 0.0 3.5 1.8 2.1 96 chrX 8826806 intergenic not near genes chrX 8826854 intergenic not near genes chrX 8826902 intergenic not near genes chrX_6_8825001 chrX_8825001 RAL-738 2492 chrX 8855245 8855264 chrX 8855406 8855425 10 161 3.0 4.5 3.8 2.1 180 chrX 8855245 intron CG12075 + chrX 8855335 intron CG12075 + chrX 8855425 intron CG12075 + chrX_10_8855001 chrX_8855001 RAL-738 2493 chrX 8877780 8877807 chrX 8877904 8877931 8 122 6.5 1.0 3.8 1.7 151 chrX 8877780 intron Moe - chrX 8877856 intron Moe - chrX 8877931 intron Moe - chrX_8_8875001 chrX_8875001 RAL-738 2494 chrX 8922346 8922362 chrX 8922758 8922795 jockey 6 422 4.5 3.5 4.0 1.2 449 chrX 8922346 intron rdgA + chrX 8922570 intron rdgA + chrX 8922795 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-738 2495 chrX 8927591 8927610 chrX 8929853 8929854 NOF 7 2265 8.5 1.5 5.0 1.2 2263 chrX 8927591 intron rdgA + chrX 8928722 intron rdgA + chrX 8929854 intron rdgA + chrX_7_8925001 chrX_8925001 RAL-738 2496 chrX 8948779 8948790 chrX 8956269 8956300 roo 4 7504 1.0 4.5 2.8 1.1 7521 chrX 8948779 intron rdgA + chrX 8952540 intron rdgA + chrX 8956300 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-738 2497 chrX 9010946 9010968 chrX 9011024 9011053 5 77 0.5 1.5 1.0 2.5 107 chrX 9010946 intron,intron rdgA +,CR43836 - chrX 9011000 intron,intron rdgA +,CR43836 - chrX 9011053 intron,intron rdgA +,CR43836 - chrX_5_9010001 chrX_9010001 RAL-738 2498 chrX 9337940 9337973 chrX 9338032 9338059 6 86 3.5 2.5 3.0 1.5 119 chrX 9337940 intron CG34449 - chrX 9338000 intron CG34449 - chrX 9338059 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-738 2499 chrX 9383986 9384006 chrX 9384063 9384081 7 74 6.0 4.5 5.2 1.1 95 chrX 9383986 intron mgl - chrX 9384034 intron mgl - chrX 9384081 intron mgl - chrX_7_9380001 chrX_9380001 RAL-738 2500 chrX 9384009 9384022 chrX 9384062 9384080 8 61 4.0 3.5 3.8 1.7 71 chrX 9384009 intron mgl - chrX 9384044 intron mgl - chrX 9384080 intron mgl - chrX_8_9380001 chrX_9380001 RAL-738 2501 chrX 9508134 9508168 chrX 9509652 9509673 jockey 14 1514 3.0 3.5 3.2 3.3 1539 chrX 9508134 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509673 intron CG32700 - chrX_14_9505001 chrX_9505001 RAL-738 2502 chrX 9543405 9543411 chrX 9543484 9543490 6 79 2.5 2.5 2.5 1.7 85 chrX 9543405 intron CG32700 - chrX 9543448 intron CG32700 - chrX 9543490 intron CG32700 - chrX_6_9540001 chrX_9540001 RAL-738 2503 chrX 9543417 9543426 chrX 9543481 9543505 7 77 1.0 2.5 1.8 2.5 88 chrX 9543417 intron CG32700 - chrX 9543461 intron CG32700 - chrX 9543505 intron CG32700 - chrX_7_9540001 chrX_9540001 RAL-738 2504 chrX 9575794 9575810 chrX 9576117 9576134 mdg3 4 324 7.5 6.5 7.0 0.5 340 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575964 intron,intron CG32699 -,CG42395 - chrX 9576134 intron,5` UTR CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-738 2505 chrX 9925529 9925554 chrX 9925611 9925636 4 82 6.5 3.5 5.0 0.7 107 chrX 9925529 intergenic not near genes chrX 9925582 intergenic not near genes chrX 9925636 intergenic not near genes chrX_4_9925001 chrX_9925001 RAL-738 2506 chrX 10138215 10138248 chrX 10145719 10145752 412 9 7503 4.0 4.5 4.2 1.7 7537 chrX 10138215 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145752 intron,intron RhoU +,CR44894 - chrX_9_10140001 chrX_10140001 RAL-738 2507 chrX 10154286 10154310 chrX 10154362 10154385 10 74 4.0 2.5 3.2 2.4 99 chrX 10154286 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154385 intron,exon CR44894 -,CG12645 + chrX_10_10150001 chrX_10150001 RAL-738 2508 chrX 10317554 10317582 chrX 10317632 10317660 12 78 0.0 1.5 0.8 6.7 106 chrX 10317554 intron alpha-Man-I - chrX 10317607 intron alpha-Man-I - chrX 10317660 intron alpha-Man-I - chrX_12_10315001 chrX_10315001 RAL-738 2509 chrX 10330424 10330674 chrX 10330859 10330872 7 244 11.0 8.0 9.5 0.7 448 chrX 10330424 exon CG15306 - chrX 10330648 exon CG15306 - chrX 10330872 exon CG15306 - chrX_7_10330001 chrX_10330001 RAL-738 2510 chrX 10348810 10348830 chrX 10356369 10356374 springer 4 7554 2.5 3.5 3.0 1.0 7564 chrX 10348810 intergenic snoRNA:U3:9B + chrX 10352592 intergenic not near genes chrX 10356374 intergenic l(1)G0289 - chrX_4_10350001 chrX_10350001 RAL-738 2511 chrX 10401394 10401429 chrX 10401475 10401510 12 80 3.0 3.0 3.0 3.0 116 chrX 10401394 intron flw + chrX 10401452 intron flw + chrX 10401510 intron flw + chrX_12_10400001 chrX_10400001 RAL-738 2512 chrX 10488465 10488485 chrX 10488549 10488569 5 82 2.0 2.0 2.0 1.7 104 chrX 10488465 intergenic not near genes chrX 10488517 intergenic not near genes chrX 10488569 intergenic not near genes chrX_5_10485001 chrX_10485001 RAL-738 2513 chrX 10550335 10550365 chrX 10550413 10550443 15 78 2.0 1.5 1.8 5.4 108 chrX 10550335 intron spri - chrX 10550389 intron spri - chrX 10550443 intron spri - chrX_15_10550001 chrX_10550001 RAL-738 2514 chrX 10550853 10550885 chrX 10552320 10552352 hobo 15 1466 5.0 0.0 2.5 4.3 1499 chrX 10550853 intron spri - chrX 10551602 intron spri - chrX 10552352 intron spri - chrX_15_10550001 chrX_10550001 RAL-738 2515 chrX 10651635 10651644 chrX 10651751 10651760 5 116 0.0 5.0 2.5 1.4 125 chrX 10651635 intron X11Lbeta + chrX 10651698 intron X11Lbeta + chrX 10651760 intron X11Lbeta + chrX_5_10650001 chrX_10650001 RAL-738 2516 chrX 10686053 10686067 chrX 10691190 10691204 roo 5 5137 7.0 7.5 7.2 0.6 5151 chrX 10686053 intron X11Lbeta + chrX 10688628 intron X11Lbeta + chrX 10691204 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-738 2517 chrX 10686071 10686081 chrX 10691186 10691218 roo 7 5134 4.5 5.0 4.8 1.2 5147 chrX 10686071 intron X11Lbeta + chrX 10688644 intron X11Lbeta + chrX 10691218 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-738 2518 chrX 10719125 10719149 chrX 10719209 10719233 8 84 0.0 5.5 2.8 2.1 108 chrX 10719125 intron CG32676 - chrX 10719179 intron CG32676 - chrX 10719233 intron CG32676 - chrX_8_10715001 chrX_10715001 RAL-738 2519 chrX 10824131 10824139 chrX 10824260 10824273 5 130 8.0 4.5 6.2 0.7 142 chrX 10824131 intergenic CR45624 + chrX 10824202 intergenic CR45624 + chrX 10824273 5` UTR CR45624 + chrX_5_10820001 chrX_10820001 RAL-738 2520 chrX 10824140 10824155 chrX 10824259 10824289 7 128 3.0 4.0 3.5 1.6 149 chrX 10824140 intergenic CR45624 + chrX 10824214 intergenic CR45624 + chrX 10824289 5` UTR CR45624 + chrX_7_10820001 chrX_10820001 RAL-738 2521 chrX 11069167 11069183 chrX 11069310 11069326 7 143 3.5 4.0 3.8 1.5 159 chrX 11069167 intergenic not near genes chrX 11069246 intergenic not near genes chrX 11069326 intergenic not near genes chrX_7_11065001 chrX_11065001 RAL-738 2522 chrX 11096009 11096027 chrX 11103111 11103129 HMS-Beagle 5 7102 2.0 6.0 4.0 1.0 7120 chrX 11096009 intergenic not near genes chrX 11099569 intergenic not near genes chrX 11103129 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-738 2523 chrX 11165890 11165899 chrX 11166208 11166229 4 324 4.0 3.0 3.5 0.9 339 chrX 11165890 intergenic not near genes chrX 11166060 intergenic not near genes chrX 11166229 intergenic not near genes chrX_4_11165001 chrX_11165001 RAL-738 2524 chrX 11205298 11205309 chrX 11205374 11205385 5 76 2.5 5.5 4.0 1.0 87 chrX 11205298 intergenic not near genes chrX 11205342 intergenic not near genes chrX 11205385 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-738 2525 chrX 11205313 11205324 chrX 11205371 11205400 5 68 1.0 5.0 3.0 1.2 87 chrX 11205313 intergenic not near genes chrX 11205356 intergenic not near genes chrX 11205400 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-738 2526 chrX 11256680 11256705 chrX 11257236 11257261 4 556 6.0 1.0 3.5 0.9 581 chrX 11256680 intron CG44422 - chrX 11256970 intron CG44422 - chrX 11257261 intron CG44422 - chrX_4_11255001 chrX_11255001 RAL-738 2527 chrX 11431612 11431625 chrX 11431687 11431712 4 84 0.0 2.5 1.2 1.8 100 chrX 11431612 3` UTR Evi5 - chrX 11431662 3` UTR Evi5 - chrX 11431712 3` UTR Evi5 - chrX_4_11430001 chrX_11430001 RAL-738 2528 chrX 11436431 11436458 chrX 11436518 11436545 8 85 4.5 3.5 4.0 1.6 114 chrX 11436431 intron Evi5 - chrX 11436488 intron Evi5 - chrX 11436545 intron Evi5 - chrX_8_11435001 chrX_11435001 RAL-738 2529 chrX 11633421 11633427 chrX 11640475 11640481 297 4 7054 7.0 4.5 5.8 0.6 7060 chrX 11633421 intron Ptp10D + chrX 11636951 intron Ptp10D + chrX 11640481 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-738 2530 chrX 11633436 11633444 chrX 11640474 11640495 297 5 7045 4.5 4.0 4.2 1.0 7059 chrX 11633436 intron Ptp10D + chrX 11636966 intron Ptp10D + chrX 11640495 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-738 2531 chrX 11645110 11645146 chrX 11648280 11648316 NOF 4 3170 1.0 1.0 1.0 2.0 3206 chrX 11645110 intron Ptp10D + chrX 11646713 intron Ptp10D + chrX 11648316 intron Ptp10D + chrX_4_11645001 chrX_11645001 RAL-738 2532 chrX 11922371 11922382 chrX 11922507 11922518 6 135 3.0 4.5 3.8 1.2 147 chrX 11922371 exon Sclp - chrX 11922444 intron Sclp - chrX 11922518 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-738 2533 chrX 12094046 12094065 chrX 12094129 12094157 9 85 3.0 3.0 3.0 2.2 111 chrX 12094046 intron,intron CR43960 +,Ten-a + chrX 12094102 intron,intron CR43960 +,Ten-a + chrX 12094157 intron,intron CR43960 +,Ten-a + chrX_9_12090001 chrX_12090001 RAL-738 2534 chrX 12168138 12168159 chrX 12173580 12173601 I-element 8 5442 2.0 3.5 2.8 2.1 5463 chrX 12168138 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173601 intron Ten-a + chrX_8_12170001 chrX_12170001 RAL-738 2535 chrX 12272843 12272869 chrX 12272922 12272948 7 79 1.5 1.5 1.5 2.8 105 chrX 12272843 intron Ten-a + chrX 12272896 intron Ten-a + chrX 12272948 intron Ten-a + chrX_7_12270001 chrX_12270001 RAL-738 2536 chrX 12350771 12350804 chrX 12350852 12350885 7 81 4.0 1.0 2.5 2.0 114 chrX 12350771 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350885 intergenic not near genes chrX_7_12350001 chrX_12350001 RAL-738 2537 chrX 12375492 12375503 chrX 12375590 12375596 6 97 4.0 3.5 3.8 1.2 104 chrX 12375492 intergenic Ir11a - chrX 12375544 intergenic Ir11a - chrX 12375596 exon Ir11a - chrX_6_12375001 chrX_12375001 RAL-738 2538 chrX 12430947 12430961 chrX 12431025 12431038 5 78 3.0 5.5 4.2 1.0 91 chrX 12430947 intergenic not near genes chrX 12430992 intergenic not near genes chrX 12431038 intergenic not near genes chrX_5_12430001 chrX_12430001 RAL-738 2539 chrX 12442085 12442115 chrX 12442165 12442197 5 76 2.0 0.5 1.2 2.3 112 chrX 12442085 intron Pkcdelta + chrX 12442141 intron Pkcdelta + chrX 12442197 intron Pkcdelta + chrX_5_12440001 chrX_12440001 RAL-738 2540 chrX 12532650 12532656 chrX 12532795 12532802 4 146 5.0 0.5 2.8 1.1 152 chrX 12532650 intron CG43921 - chrX 12532726 intron CG43921 - chrX 12532802 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-738 2541 chrX 12533813 12533823 chrX 12533889 12533899 6 76 0.5 5.5 3.0 1.5 86 chrX 12533813 intron CG43921 - chrX 12533856 intron CG43921 - chrX 12533899 intron CG43921 - chrX_6_12530001 chrX_12530001 RAL-738 2542 chrX 12752278 12752308 chrX 12752365 12752395 16 86 3.5 7.0 5.2 2.6 117 chrX 12752278 5` UTR CR44619 + chrX 12752336 5` UTR CR44619 + chrX 12752395 5` UTR CR44619 + chrX_16_12750001 chrX_12750001 RAL-738 2543 chrX 12756738 12756762 chrX 12756854 12756855 9 109 1.5 0.0 0.8 5.0 117 chrX 12756738 intergenic ade5 - chrX 12756796 intergenic ade5 - chrX 12756855 intergenic ade5 - chrX_9_12755001 chrX_12755001 RAL-738 2544 chrX 12838357 12838383 chrX 12838438 12838464 8 81 3.0 4.5 3.8 1.7 107 chrX 12838357 intron Pde9 - chrX 12838410 intron Pde9 - chrX 12838464 intron Pde9 - chrX_8_12835001 chrX_12835001 RAL-738 2545 chrX 12971691 12971724 chrX 12971766 12971766 5 60 3.5 7.0 5.2 0.8 75 chrX 12971691 intron,exon CR43636 -,CG15721 + chrX 12971728 intron,exon CR43636 -,CG15721 + chrX 12971766 intron,exon CR43636 -,CG15721 + chrX_5_12970001 chrX_12970001 RAL-738 2546 chrX 13061356 13061373 chrX 13061467 13061474 5 109 3.5 2.0 2.8 1.3 118 chrX 13061356 intron rad + chrX 13061415 intron rad + chrX 13061474 intron rad + chrX_5_13060001 chrX_13060001 RAL-738 2547 chrX 13146597 13146631 chrX 13146685 13146719 16 87 3.5 2.0 2.8 4.2 122 chrX 13146597 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146719 intron CG32645 + chrX_16_13145001 chrX_13145001 RAL-738 2548 chrX 13149112 13149147 chrX 13149641 13149676 12 525 5.0 3.0 4.0 2.4 564 chrX 13149112 intron CG32645 + chrX 13149394 intron CG32645 + chrX 13149676 intron CG32645 + chrX_12_13145001 chrX_13145001 RAL-738 2549 chrX 13374843 13374858 chrX 13374915 13374938 5 71 5.0 0.5 2.8 1.3 95 chrX 13374843 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374938 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-738 2550 chrX 13429463 13429477 chrX 13430612 13430625 jockey 7 1148 10.0 4.0 7.0 0.9 1162 chrX 13429463 intergenic not near genes chrX 13430044 intergenic not near genes chrX 13430625 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-738 2551 chrX 13429484 13429493 chrX 13430606 13430642 jockey 5 1143 5.0 3.0 4.0 1.0 1158 chrX 13429484 intergenic not near genes chrX 13430063 intergenic not near genes chrX 13430642 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-738 2552 chrX 13463646 13463675 chrX 13469223 13469245 mdg3 5 5576 3.0 6.5 4.8 0.9 5599 chrX 13463646 intron Neto + chrX 13466446 intron Neto + chrX 13469245 intron Neto + chrX_5_13465001 chrX_13465001 RAL-738 2553 chrX 13748677 13748706 chrX 13748762 13748790 6 84 3.0 2.0 2.5 1.7 113 chrX 13748677 intron Pdcd4 - chrX 13748734 intron Pdcd4 - chrX 13748790 intron Pdcd4 - chrX_6_13745001 chrX_13745001 RAL-738 2554 chrX 13934297 13934323 chrX 13934380 13934406 7 80 1.5 3.0 2.2 2.2 109 chrX 13934297 intron mamo - chrX 13934352 intron mamo - chrX 13934406 intron mamo - chrX_7_13930001 chrX_13930001 RAL-738 2555 chrX 13937990 13938011 chrX 13941259 13941282 I-element 4 3270 3.0 3.5 3.2 1.0 3292 chrX 13937990 intron mamo - chrX 13939636 intron mamo - chrX 13941282 intron mamo - chrX_4_13935001 chrX_13935001 RAL-738 2556 chrX 13943277 13943293 chrX 13943368 13943384 7 91 0.0 4.0 2.0 2.3 107 chrX 13943277 intron mamo - chrX 13943330 intron mamo - chrX 13943384 intron mamo - chrX_7_13940001 chrX_13940001 RAL-738 2557 chrX 13997790 13997819 chrX 13997882 13997911 7 87 2.5 5.0 3.8 1.5 121 chrX 13997790 intron ben + chrX 13997850 intron ben + chrX 13997911 intron ben + chrX_7_13995001 chrX_13995001 RAL-738 2558 chrX 14023134 14023148 chrX 14023224 14023241 4 92 1.5 5.0 3.2 1.0 107 chrX 14023134 intergenic not near genes chrX 14023188 intergenic not near genes chrX 14023241 intergenic not near genes chrX_4_14020001 chrX_14020001 RAL-738 2559 chrX 8765499 8765499 chrX 14096507 14096526 4 5331018 6.5 20.5 13.5 0.3 5331027 chrX 8765499 intron Lim1 - chrX 11431012 3` UTR Evi5 - chrX 14096526 intergenic not near genes chrX_4_11430001 chrX_11430001 RAL-738 2560 chrX 14105023 14105052 chrX 14114174 14114186 roo 6 9147 7.5 4.5 6.0 0.9 9163 chrX 14105023 intergenic not near genes chrX 14109604 intergenic not near genes chrX 14114186 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-738 2561 chrX 14139197 14139209 chrX 14139283 14139295 6 86 4.0 7.0 5.5 0.9 98 chrX 14139197 intergenic not near genes chrX 14139246 intergenic not near genes chrX 14139295 intergenic not near genes chrX_6_14135001 chrX_14135001 RAL-738 2562 chrX 14157609 14157624 chrX 14163253 14163274 297 6 5651 3.5 2.5 3.0 1.5 5665 chrX 14157609 intergenic not near genes chrX 14160442 intergenic not near genes chrX 14163274 intergenic not near genes chrX_6_14160001 chrX_14160001 RAL-738 2563 chrX 14168387 14168407 chrX 14168505 14168525 5 115 2.5 4.5 3.5 1.1 138 chrX 14168387 intergenic not near genes chrX 14168456 intergenic not near genes chrX 14168525 intergenic not near genes chrX_5_14165001 chrX_14165001 RAL-738 2564 chrX 14209463 14209490 chrX 14209554 14209576 9 90 4.0 1.5 2.8 2.4 113 chrX 14209463 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209576 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-738 2565 chrX 14300808 14300834 chrX 14300886 14300891 9 72 3.5 2.5 3.0 2.2 83 chrX 14300808 intergenic not near genes chrX 14300850 intergenic not near genes chrX 14300891 intergenic not near genes chrX_9_14300001 chrX_14300001 RAL-738 2566 chrX 14312772 14312807 chrX 14312853 14312888 6 80 2.0 1.5 1.8 2.1 116 chrX 14312772 intergenic not near genes chrX 14312830 intergenic not near genes chrX 14312888 intergenic not near genes chrX_6_14310001 chrX_14310001 RAL-738 2567 chrX 14313105 14313110 chrX 14313195 14313200 4 90 2.0 7.5 4.8 0.7 95 chrX 14313105 intergenic not near genes chrX 14313152 intergenic not near genes chrX 14313200 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-738 2568 chrX 14369610 14369625 chrX 14369716 14369737 6 105 5.0 2.5 3.8 1.2 127 chrX 14369610 intron dpr8 + chrX 14369674 intron dpr8 + chrX 14369737 intron dpr8 + chrX_6_14365001 chrX_14365001 RAL-738 2569 chrX 14369627 14369635 chrX 14369715 14369746 4 103 2.0 2.5 2.2 1.2 119 chrX 14369627 intron dpr8 + chrX 14369686 intron dpr8 + chrX 14369746 intron dpr8 + chrX_4_14365001 chrX_14365001 RAL-738 2570 chrX 14416306 14416317 chrX 14421074 14421085 F-element 5 4768 2.5 4.0 3.2 1.2 4779 chrX 14416306 intron dpr8 + chrX 14418696 intron dpr8 + chrX 14421085 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-738 2571 chrX 14589685 14589706 chrX 14589926 14589947 pogo 8 236 1.0 2.5 1.8 2.9 262 chrX 14589685 intron CG9413 - chrX 14589816 intron CG9413 - chrX 14589947 intron CG9413 - chrX_8_14585001 chrX_14585001 RAL-738 2572 chrX 14636462 14636478 chrX 14641903 14641908 I-element 6 5439 7.5 8.5 8.0 0.7 5446 chrX 14636462 intron NetA - chrX 14639185 intron NetA - chrX 14641908 intron NetA - chrX_6_14635001 chrX_14635001 RAL-738 2573 chrX 14636479 14636484 chrX 14641902 14641915 I-element 7 5435 6.5 8.0 7.2 0.9 5436 chrX 14636479 intron NetA - chrX 14639197 intron NetA - chrX 14641915 intron NetA - chrX_7_14635001 chrX_14635001 RAL-738 2574 chrX 14778038 14778054 chrX 14782825 14782851 Doc 8 4795 3.5 3.5 3.5 1.8 4813 chrX 14778038 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782851 intergenic Ag5r2 - chrX_8_14780001 chrX_14780001 RAL-738 2575 chrX 14799713 14799733 chrX 14799797 14799817 7 83 2.5 4.5 3.5 1.6 104 chrX 14799713 intron rut - chrX 14799765 intron rut - chrX 14799817 intron rut - chrX_7_14795001 chrX_14795001 RAL-738 2576 chrX 14806758 14806786 chrX 14806846 14806874 9 88 1.0 1.0 1.0 4.5 116 chrX 14806758 intron rut - chrX 14806816 intron rut - chrX 14806874 intron rut - chrX_9_14805001 chrX_14805001 RAL-738 2577 chrX 14809578 14809600 chrX 14809665 14809683 7 85 2.0 3.0 2.5 2.0 105 chrX 14809578 intron rut - chrX 14809630 intron rut - chrX 14809683 intron rut - chrX_7_14805001 chrX_14805001 RAL-738 2578 chrX 14818765 14818796 chrX 14823966 14823989 copia 8 5198 1.5 4.0 2.8 2.1 5224 chrX 14818765 intron rut - chrX 14821377 intron rut - chrX 14823989 intron rut - chrX_8_14820001 chrX_14820001 RAL-738 2579 chrX 14825358 14825372 chrX 14825434 14825448 5 76 9.0 2.0 5.5 0.8 90 chrX 14825358 intron rut - chrX 14825403 intron rut - chrX 14825448 intron rut - chrX_5_14825001 chrX_14825001 RAL-738 2580 chrX 14900083 14900088 chrX 14900170 14900175 4 87 0.5 0.0 0.2 3.3 92 chrX 14900083 intron Flo2 + chrX 14900129 intron Flo2 + chrX 14900175 intron Flo2 + chrX_4_14900001 chrX_14900001 RAL-738 2581 chrX 14936857 14936893 chrX 14946114 14946149 roo 10 9257 4.5 3.5 4.0 2.0 9292 chrX 14936857 intron pdgy - chrX 14941503 intron pdgy - chrX 14946149 intron pdgy - chrX_10_14940001 chrX_14940001 RAL-738 2582 chrX 14968083 14968101 chrX 14968157 14968180 5 78 5.0 4.5 4.8 0.9 97 chrX 14968083 intron eag + chrX 14968132 intron eag + chrX 14968180 intron eag + chrX_5_14965001 chrX_14965001 RAL-738 2583 chrX 14981733 14981739 chrX 14981812 14981818 4 79 1.5 2.0 1.8 1.4 85 chrX 14981733 intron eag + chrX 14981776 intron eag + chrX 14981818 intron eag + chrX_4_14980001 chrX_14980001 RAL-738 2584 chrX 15340290 15340456 chrX 15342825 15342948 4 2524 36.5 21.5 29.0 0.1 2658 chrX 15340290 3` UTR HDAC6 + chrX 15341619 exon CG9123 - chrX 15342948 3` UTR CG12608 - chrX_4_15340001 chrX_15340001 RAL-738 2585 chrX 15369846 15369860 chrX 15369929 15369943 8 82 4.5 5.5 5.0 1.3 97 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369943 intron acj6 - chrX_8_15365001 chrX_15365001 RAL-738 2586 chrX 15413048 15413066 chrX 15417350 15417358 Juan 6 4299 13.5 3.5 8.5 0.6 4310 chrX 15413048 intron Cngl - chrX 15415203 intron Cngl - chrX 15417358 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-738 2587 chrX 15413069 15413083 chrX 15417346 15417363 Juan 5 4286 8.0 3.5 5.8 0.7 4294 chrX 15413069 intron Cngl - chrX 15415216 intron Cngl - chrX 15417363 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-738 2588 chrX 15421920 15421942 chrX 15423431 15423453 pogo 7 1511 2.5 1.0 1.8 2.5 1533 chrX 15421920 intron Cngl - chrX 15422686 intron Cngl - chrX 15423453 intron Cngl - chrX_7_15420001 chrX_15420001 RAL-738 2589 chrX 15435688 15435700 chrX 15436113 15436131 rover 7 431 1.0 5.0 3.0 1.8 443 chrX 15435688 intron Cngl - chrX 15435910 intron Cngl - chrX 15436131 intron Cngl - chrX_7_15435001 chrX_15435001 RAL-738 2590 chrX 15671198 15671207 chrX 15671285 15671287 4 85 1.0 0.5 0.8 2.2 89 chrX 15671198 intergenic CG15646 - chrX 15671242 intergenic CG15646 - chrX 15671287 intergenic CG15646 - chrX_4_15670001 chrX_15670001 RAL-738 2591 chrX 15678055 15678067 chrX 15678118 15678133 10 72 5.5 7.0 6.2 1.4 78 chrX 15678055 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678133 intergenic CG12708 + chrX_10_15675001 chrX_15675001 RAL-738 2592 chrX 15898439 15898461 chrX 15898593 15898615 5 153 3.0 4.5 3.8 1.0 176 chrX 15898439 intron shi + chrX 15898527 intron shi + chrX 15898615 intron shi + chrX_5_15895001 chrX_15895001 RAL-738 2593 chrX 15940837 15940849 chrX 15940920 15940925 4 82 2.5 1.5 2.0 1.3 88 chrX 15940837 intergenic CG8924 +,Stim - chrX 15940881 intergenic CG8924 +,Stim - chrX 15940925 intergenic CG8924 +,Stim - chrX_4_15940001 chrX_15940001 RAL-738 2594 chrX 15959539 15959572 chrX 15959627 15959660 9 87 2.5 1.0 1.8 3.2 121 chrX 15959539 intron mmd - chrX 15959600 intron mmd - chrX 15959660 intron mmd - chrX_9_15955001 chrX_15955001 RAL-738 2595 chrX 16129580 16129596 chrX 16129666 16129677 4 85 0.0 2.5 1.2 1.8 97 chrX 16129580 intron disco-r - chrX 16129628 intron disco-r - chrX 16129677 intron disco-r - chrX_4_16125001 chrX_16125001 RAL-738 2596 chrX 16222777 16222810 chrX 16231127 16231160 roo 8 8350 3.0 2.5 2.8 2.1 8383 chrX 16222777 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231160 intergenic not near genes chrX_8_16225001 chrX_16225001 RAL-738 2597 chrX 16295531 16295548 chrX 16295615 16295631 5 84 5.0 0.0 2.5 1.4 100 chrX 16295531 intron CG9911 - chrX 16295581 intron CG9911 - chrX 16295631 intron CG9911 - chrX_5_16295001 chrX_16295001 RAL-738 2598 chrX 16329434 16329441 chrX 16329512 16329524 5 81 0.0 8.0 4.0 1.0 90 chrX 16329434 intron CG9919 - chrX 16329479 intron CG9919 - chrX 16329524 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-738 2599 chrX 16492646 16492678 chrX 16498223 16498255 mdg3 10 5575 3.0 6.0 4.5 1.8 5609 chrX 16492646 intron para - chrX 16495450 intron para - chrX 16498255 intron para - chrX_10_16495001 chrX_16495001 RAL-738 2600 chrX 16529425 16529437 chrX 16529521 16529548 6 108 0.5 6.0 3.2 1.4 123 chrX 16529425 intron para - chrX 16529486 intron para - chrX 16529548 intron para - chrX_6_16525001 chrX_16525001 RAL-738 2601 chrX 16623484 16623498 chrX 16623570 16623584 4 86 7.5 1.0 4.2 0.8 100 chrX 16623484 intergenic not near genes chrX 16623534 intergenic Rok - chrX 16623584 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-738 2602 chrX 16714942 16714958 chrX 16715025 16715026 9 81 5.5 5.0 5.2 1.5 84 chrX 16714942 exon CG34325 - chrX 16714984 intron CG34325 - chrX 16715026 intron CG34325 - chrX_9_16710001 chrX_16710001 RAL-738 2603 chrX 17011983 17011996 chrX 17012065 17012074 4 82 4.5 6.5 5.5 0.6 91 chrX 17011983 intron CG45002 - chrX 17012028 intron CG45002 - chrX 17012074 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-738 2604 chrX 17063179 17063200 chrX 17063266 17063287 11 86 4.0 3.0 3.5 2.4 108 chrX 17063179 intron CG45002 - chrX 17063233 intron CG45002 - chrX 17063287 intron CG45002 - chrX_11_17060001 chrX_17060001 RAL-738 2605 chrX 17195202 17195233 chrX 17200288 17200319 flea 8 5086 3.5 2.5 3.0 2.0 5117 chrX 17195202 3` UTR baz + chrX 17197760 3` UTR baz + chrX 17200319 3` UTR baz + chrX_8_17195001 chrX_17195001 RAL-738 2606 chrX 17290066 17290097 chrX 17290142 17290173 11 76 3.5 2.0 2.8 2.9 107 chrX 17290066 intron,intron CG5445 +,Fim - chrX 17290120 intron,intron CG5445 +,Fim - chrX 17290173 intron,intron CG5445 +,Fim - chrX_11_17290001 chrX_17290001 RAL-738 2607 chrX 17322521 17322548 chrX 17322599 17322626 4 74 3.0 1.5 2.2 1.2 105 chrX 17322521 intron B-H2 + chrX 17322574 intron B-H2 + chrX 17322626 intron B-H2 + chrX_4_17320001 chrX_17320001 RAL-738 2608 chrX 17502350 17502367 chrX 17502430 17502443 7 78 4.5 3.5 4.0 1.4 93 chrX 17502350 intron CG43658 - chrX 17502396 intron CG43658 - chrX 17502443 intron CG43658 - chrX_7_17500001 chrX_17500001 RAL-738 2609 chrX 17766360 17766370 chrX 17766458 17766468 4 98 4.0 4.0 4.0 0.8 108 chrX 17766360 intergenic not near genes chrX 17766414 intergenic not near genes chrX 17766468 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-738 2610 chrX 17953930 17953940 chrX 17954025 17954034 5 95 7.5 6.0 6.8 0.6 104 chrX 17953930 intron Sh - chrX 17953982 intron Sh - chrX 17954034 intron Sh - chrX_5_17950001 chrX_17950001 RAL-738 2611 chrX 17953943 17953960 chrX 17954021 17954055 7 91 3.5 6.0 4.8 1.2 112 chrX 17953943 intron Sh - chrX 17953999 intron Sh - chrX 17954055 intron Sh - chrX_7_17950001 chrX_17950001 RAL-738 2612 chrX 17968898 17968930 chrX 17969016 17969048 7 118 1.0 2.5 1.8 2.5 150 chrX 17968898 intron Sh - chrX 17968973 intron Sh - chrX 17969048 intron Sh - chrX_7_17965001 chrX_17965001 RAL-738 2613 chrX 17972214 17972238 chrX 17972575 17972604 6 365 6.0 4.0 5.0 1.0 390 chrX 17972214 intron Sh - chrX 17972409 intron Sh - chrX 17972604 intron Sh - chrX_6_17970001 chrX_17970001 RAL-738 2614 chrX 18122820 18122830 chrX 18122896 18122904 6 74 7.5 4.5 6.0 0.9 84 chrX 18122820 5` UTR CR45606 + chrX 18122862 5` UTR CR45606 + chrX 18122904 5` UTR CR45606 + chrX_6_18120001 chrX_18120001 RAL-738 2615 chrX 18122831 18122849 chrX 18122895 18122904 7 67 6.0 4.0 5.0 1.2 73 chrX 18122831 5` UTR CR45606 + chrX 18122868 5` UTR CR45606 + chrX 18122904 5` UTR CR45606 + chrX_7_18120001 chrX_18120001 RAL-738 2616 chrX 18194064 18194105 chrX 18194599 18194640 BS 21 534 3.0 4.0 3.5 4.7 576 chrX 18194064 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194640 intron Frq2 + chrX_21_18190001 chrX_18190001 RAL-738 2617 chrX 18322071 18322098 chrX 18322147 18322172 6 71 4.0 5.5 4.8 1.0 101 chrX 18322071 intergenic not near genes chrX 18322122 intergenic not near genes chrX 18322172 intergenic not near genes chrX_6_18320001 chrX_18320001 RAL-738 2618 chrX 18427382 18427390 chrX 18427793 18427801 7 411 7.5 5.0 6.2 1.0 419 chrX 18427382 intergenic CG42323 + chrX 18427592 intergenic not near genes chrX 18427801 intergenic not near genes chrX_7_18425001 chrX_18425001 RAL-738 2619 chrX 18427391 18427409 chrX 18427792 18427804 10 405 4.5 5.0 4.8 1.7 413 chrX 18427391 intergenic CG42323 + chrX 18427598 intergenic not near genes chrX 18427804 intergenic not near genes chrX_10_18425001 chrX_18425001 RAL-738 2620 chrX 18429495 18429520 chrX 18434806 18434831 Transpac 10 5311 7.5 7.0 7.2 1.2 5336 chrX 18429495 intergenic not near genes chrX 18432163 intergenic not near genes chrX 18434831 intergenic not near genes chrX_10_18430001 chrX_18430001 RAL-738 2621 chrX 12946235 12946235 chrX 18572525 18572526 5 5626290 14.0 12.0 13.0 0.4 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_5_15755001 chrX_15755001 RAL-738 2622 chrX 18645014 18645023 chrX 18645112 18645121 4 98 11.0 6.5 8.8 0.4 107 chrX 18645014 intron Rip11 - chrX 18645068 intron Rip11 - chrX 18645121 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-738 2623 chrX 18645028 18645049 chrX 18645110 18645147 4 94 6.0 6.5 6.2 0.6 119 chrX 18645028 intron Rip11 - chrX 18645088 intron Rip11 - chrX 18645147 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-738 2624 chrX 18698844 18698878 chrX 18698961 18698995 9 117 2.0 3.5 2.8 2.4 151 chrX 18698844 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18698995 intergenic not near genes chrX_9_18695001 chrX_18695001 RAL-738 2625 chrX 18896517 18896541 chrX 18896627 18896652 9 110 4.0 2.5 3.2 2.1 135 chrX 18896517 3` UTR CG7349 + chrX 18896584 intergenic CG7349 + chrX 18896652 intergenic CG7349 + chrX_9_18895001 chrX_18895001 RAL-738 2626 chrX 19056067 19056095 chrX 19056170 19056198 5 103 0.5 2.0 1.2 2.3 131 chrX 19056067 intergenic not near genes chrX 19056132 intergenic not near genes chrX 19056198 intergenic not near genes chrX_5_19055001 chrX_19055001 RAL-738 2627 chrX 19060407 19060432 chrX 19065191 19065216 Doc 7 4783 5.5 6.5 6.0 1.0 4809 chrX 19060407 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065216 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-738 2628 chrX 19076511 19076519 chrX 21235659 21235660 4 2159146 6.0 20.0 13.0 0.3 2159149 chrX 19076511 intergenic not near genes chrX 20156086 3` UTR Rab35 - chrX 21235660 intron CG32521 - chrX_4_20155001 chrX_20155001 RAL-738 2629 chrX 19084108 19084119 chrX 19084216 19084239 10 115 0.0 4.5 2.2 3.1 131 chrX 19084108 intergenic CR45503 + chrX 19084174 intergenic CR45503 + chrX 19084239 intergenic CR45503 + chrX_10_19080001 chrX_19080001 RAL-738 2630 chrX 19106827 19106855 chrX 19106898 19106906 11 68 3.0 1.5 2.2 3.4 79 chrX 19106827 intergenic not near genes chrX 19106866 intergenic not near genes chrX 19106906 intergenic not near genes chrX_11_19105001 chrX_19105001 RAL-738 2631 chrX 19124438 19124453 chrX 19124526 19124541 6 88 1.5 2.5 2.0 2.0 103 chrX 19124438 intergenic CG15882 - chrX 19124490 intergenic CG15882 - chrX 19124541 intergenic CG15882 -,tgy - chrX_6_19120001 chrX_19120001 RAL-738 2632 chrX 19125696 19125717 chrX 19125825 19125846 10 129 7.0 7.0 7.0 1.2 150 chrX 19125696 intron tgy - chrX 19125771 intron tgy - chrX 19125846 intron tgy - chrX_10_19125001 chrX_19125001 RAL-738 2633 chrX 19136554 19136585 chrX 19143474 19143504 412 4 6920 3.0 7.5 5.2 0.6 6950 chrX 19136554 intergenic not near genes chrX 19140029 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-738 2634 chrX 13057298 13057300 chrX 19242812 19242814 17 6185514 14.0 19.0 16.5 1.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_17_16150001 chrX_16150001 RAL-738 2635 chrX 19380157 19380188 chrX 19380396 19380429 pogo 10 240 4.0 4.0 4.0 2.0 272 chrX 19380157 intron kek5 + chrX 19380293 intron kek5 + chrX 19380429 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-738 2636 chrX 19404628 19404631 chrX 19404726 19404729 4 98 2.5 0.0 1.2 1.8 101 chrX 19404628 intron kek5 + chrX 19404678 intron kek5 + chrX 19404729 intron kek5 + chrX_4_19400001 chrX_19400001 RAL-738 2637 chrX 19472122 19472163 chrX 19472691 19472691 jockey 13 557 2.5 7.5 5.0 2.2 569 chrX 19472122 intergenic kek5 + chrX 19472406 intergenic kek5 + chrX 19472691 intergenic not near genes chrX_13_19470001 chrX_19470001 RAL-738 2638 chrX 19474764 19474766 chrX 19474838 19474846 4 78 8.5 1.5 5.0 0.7 82 chrX 19474764 exon CG32533 - chrX 19474805 intron CG32533 - chrX 19474846 intron CG32533 - chrX_4_19470001 chrX_19470001 RAL-738 2639 chrX 19474772 19474786 chrX 19474831 19474866 5 76 4.5 1.5 3.0 1.2 94 chrX 19474772 intron CG32533 - chrX 19474819 intron CG32533 - chrX 19474866 intron CG32533 - chrX_5_19470001 chrX_19470001 RAL-738 2640 chrX 19593948 19593976 chrX 19594032 19594061 16 82 2.5 10.5 6.5 2.1 113 chrX 19593948 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594061 intron CG14205 + chrX_16_19590001 chrX_19590001 RAL-738 2641 chrX 19710074 19710104 chrX 19711858 19711890 S-element 11 1780 7.5 6.0 6.8 1.4 1816 chrX 19710074 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_11_19710001 chrX_19710001 RAL-738 2642 chrX 19769514 19769526 chrX 19769591 19769603 4 77 5.0 10.5 7.8 0.5 89 chrX 19769514 intron vfl - chrX 19769558 intron vfl - chrX 19769603 intron vfl - chrX_4_19765001 chrX_19765001 RAL-738 2643 chrX 19881453 19881482 chrX 19881534 19881563 12 79 3.0 3.0 3.0 3.0 110 chrX 19881453 intron Hers + chrX 19881508 intron Hers + chrX 19881563 intron Hers + chrX_12_19880001 chrX_19880001 RAL-738 2644 chrX 19883766 19883798 chrX 19883851 19883883 10 83 2.0 6.0 4.0 2.0 117 chrX 19883766 intron Hers + chrX 19883824 intron Hers + chrX 19883883 intron Hers + chrX_10_19880001 chrX_19880001 RAL-738 2645 chrX 19897382 19897416 chrX 19897459 19897493 11 77 3.0 2.5 2.8 2.9 111 chrX 19897382 intron Hers + chrX 19897438 intron Hers + chrX 19897493 intron Hers + chrX_11_19895001 chrX_19895001 RAL-738 2646 chrX 19983529 19983533 chrX 19983688 19983689 4 158 0.0 0.0 0.0 4.0 160 chrX 19983529 intergenic not near genes chrX 19983609 intergenic not near genes chrX 19983689 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-738 2647 chrX 20041532 20041564 chrX 20041612 20041642 7 77 4.5 3.0 3.8 1.5 110 chrX 20041532 intron Dop2R - chrX 20041587 intron Dop2R - chrX 20041642 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-738 2648 chrX 20049826 20049850 chrX 20049921 20049945 11 91 5.5 7.5 6.5 1.5 119 chrX 20049826 intron Dop2R - chrX 20049886 intron Dop2R - chrX 20049945 intron Dop2R - chrX_11_20045001 chrX_20045001 RAL-738 2649 chrX 20105200 20105224 chrX 20105319 20105328 6 109 43.5 36.5 40.0 0.1 128 chrX 20105200 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105328 intergenic not near genes chrX_6_20105001 chrX_20105001 RAL-738 2650 chrX 20144297 20144313 chrX 20144368 20144378 9 76 0.0 5.0 2.5 2.6 81 chrX 20144297 intergenic not near genes chrX 20144338 intergenic not near genes chrX 20144378 intergenic not near genes chrX_9_20140001 chrX_20140001 RAL-738 2651 chrX 20144849 20144876 chrX 20145019 20145046 13 168 3.0 4.5 3.8 2.7 197 chrX 20144849 intergenic not near genes chrX 20144948 intergenic not near genes chrX 20145046 intergenic not near genes chrX_13_20140001 chrX_20140001 RAL-738 2652 chrX 20257768 20257776 chrX 20257854 20257861 4 86 2.5 2.5 2.5 1.1 93 chrX 20257768 intergenic not near genes chrX 20257814 intergenic not near genes chrX 20257861 intergenic not near genes chrX_4_20255001 chrX_20255001 RAL-738 2653 chrX 20259358 20259378 chrX 20446509 20446524 6 187150 21.5 1.5 11.5 0.5 187166 chrX 20259358 exon CG42577 + chrX 20352941 intergenic not near genes chrX 20446524 exon CG42578 + chrX_6_20350001 chrX_20350001 RAL-738 2654 chrX 20271512 20271525 chrX 20271603 20271617 6 91 4.5 0.0 2.2 1.9 105 chrX 20271512 intergenic not near genes chrX 20271564 intergenic not near genes chrX 20271617 intergenic not near genes chrX_6_20270001 chrX_20270001 RAL-738 2655 chrX 20312885 20312892 chrX 20312963 20312970 6 78 5.0 3.5 4.2 1.2 85 chrX 20312885 intron CG1504 - chrX 20312928 intron CG1504 - chrX 20312970 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-738 2656 chrX 20312894 20312908 chrX 20312961 20312986 7 71 3.5 3.0 3.2 1.7 92 chrX 20312894 intron CG1504 - chrX 20312940 intron CG1504 - chrX 20312986 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-738 2657 chrX 20374104 20374120 chrX 20374180 20374196 6 76 2.5 6.5 4.5 1.1 92 chrX 20374104 intergenic not near genes chrX 20374150 intergenic not near genes chrX 20374196 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-738 2658 chrX 20374121 20374128 chrX 20374171 20374180 7 64 2.0 4.5 3.2 1.7 59 chrX 20374121 intergenic not near genes chrX 20374150 intergenic not near genes chrX 20374180 intergenic not near genes chrX_7_20370001 chrX_20370001 RAL-738 2659 chrX 20377327 20377348 chrX 20378793 20378815 hobo 9 1466 7.0 7.0 7.0 1.1 1488 chrX 20377327 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378815 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-738 2660 chrX 20443170 20443180 chrX 20443246 20443256 4 76 8.0 1.0 4.5 0.7 86 chrX 20443170 exon CG1695 + chrX 20443213 intron CG1695 + chrX 20443256 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-738 2661 chrX 20448438 20448448 chrX 20448522 20448531 4 84 3.0 0.0 1.5 1.6 93 chrX 20448438 intergenic not near genes chrX 20448484 intergenic not near genes chrX 20448531 intergenic not near genes chrX_4_20445001 chrX_20445001 RAL-738 2662 chrX 20468014 20468039 chrX 20468103 20468124 5 88 2.5 0.0 1.2 2.3 110 chrX 20468014 intron GstT3 + chrX 20468069 intron GstT3 + chrX 20468124 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-738 2663 chrX 20493912 20493926 chrX 20494073 20494087 7 161 0.0 2.0 1.0 3.5 175 chrX 20493912 intron RhoGAP19D - chrX 20494000 intron RhoGAP19D - chrX 20494087 intron RhoGAP19D - chrX_7_20490001 chrX_20490001 RAL-738 2664 chrX 20575159 20575186 chrX 20575237 20575263 10 75 0.0 5.0 2.5 2.9 104 chrX 20575159 intergenic CG42580 + chrX 20575211 intergenic not near genes chrX 20575263 intergenic not near genes chrX_10_20575001 chrX_20575001 RAL-738 2665 chrX 20578074 20578108 chrX 20578153 20578187 5 79 3.5 1.5 2.5 1.4 113 chrX 20578074 intergenic not near genes chrX 20578130 intergenic not near genes chrX 20578187 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-738 2666 chrX 20662312 20662337 chrX 20662395 20662397 5 73 7.0 1.0 4.0 1.0 85 chrX 20662312 intron CG1835 + chrX 20662354 intron CG1835 + chrX 20662397 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-738 2667 chrX 20703931 20703958 chrX 20704007 20704034 7 75 3.5 2.0 2.8 1.8 103 chrX 20703931 intergenic not near genes chrX 20703982 intergenic not near genes chrX 20704034 intergenic not near genes chrX_7_20700001 chrX_20700001 RAL-738 2668 chrX 20710415 20710431 chrX 20710492 20710508 6 77 0.5 5.5 3.0 1.5 93 chrX 20710415 intergenic not near genes chrX 20710462 intergenic not near genes chrX 20710508 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-738 2669 chrX 20741588 20741611 chrX 20741664 20741671 11 74 3.5 0.0 1.8 3.9 83 chrX 20741588 intergenic not near genes chrX 20741630 intergenic not near genes chrX 20741671 intergenic not near genes chrX_11_20740001 chrX_20740001 RAL-738 2670 chrX 20836051 20836079 chrX 20836139 20836159 8 84 3.5 3.5 3.5 1.8 108 chrX 20836051 intron shakB - chrX 20836105 intron shakB - chrX 20836159 intron shakB - chrX_8_20835001 chrX_20835001 RAL-738 2671 chrX 20836725 20836759 chrX 20844327 20844361 roo 7 7599 4.5 1.5 3.0 1.8 7636 chrX 20836725 intron shakB - chrX 20840543 intron shakB - chrX 20844361 intron shakB - chrX_7_20840001 chrX_20840001 RAL-738 2672 chrX 20940719 20940752 chrX 20942187 20942217 hobo 20 1465 4.0 5.0 4.5 3.6 1498 chrX 20940719 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942217 intergenic not near genes chrX_20_20940001 chrX_20940001 RAL-738 2673 chrX 20947846 20947876 chrX 20947935 20947967 9 88 2.0 2.0 2.0 3.0 121 chrX 20947846 intergenic not near genes chrX 20947906 intergenic not near genes chrX 20947967 intergenic not near genes chrX_9_20945001 chrX_20945001 RAL-738 2674 chrX 20952038 20952065 chrX 20952122 20952149 7 84 5.5 4.5 5.0 1.2 111 chrX 20952038 intergenic not near genes chrX 20952094 intergenic not near genes chrX 20952149 intergenic not near genes chrX_7_20950001 chrX_20950001 RAL-738 2675 chrX 20956990 20957013 chrX 20962432 20962449 I-element 9 5441 4.5 2.5 3.5 2.0 5459 chrX 20956990 intergenic not near genes chrX 20959720 intergenic not near genes chrX 20962449 intergenic Ser6 - chrX_9_20955001 chrX_20955001 RAL-738 2676 chrX 20963051 20963190 chrX 20964990 20965159 4 1961 16.5 0.5 8.5 0.4 2108 chrX 20963051 exon Ser6 - chrX 20964105 intergenic CG1304 - chrX 20965159 exon CG1304 - chrX_4_20960001 chrX_20960001 RAL-738 2677 chrX 21008662 21008691 chrX 21008748 21008778 8 87 2.5 0.5 1.5 3.2 116 chrX 21008662 intergenic not near genes chrX 21008720 intergenic not near genes chrX 21008778 intergenic not near genes chrX_8_21005001 chrX_21005001 RAL-738 2678 chrX 21061868 21061897 chrX 21062353 21062366 roo 6 482 1.5 1.0 1.2 2.7 498 chrX 21061868 intron bves + chrX 21062117 intron bves + chrX 21062366 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-738 2679 chrX 21076347 21076355 chrX 21076405 21076434 5 75 1.5 1.0 1.2 2.3 87 chrX 21076347 intron bves + chrX 21076390 intron bves + chrX 21076434 intron bves + chrX_5_21075001 chrX_21075001 RAL-738 2680 chrX 21086129 21086163 chrX 21087157 21087173 jockey 12 1023 6.5 3.0 4.8 2.1 1044 chrX 21086129 intergenic not near genes chrX 21086651 intergenic not near genes chrX 21087173 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-738 2681 chrX 21088048 21088071 chrX 21088174 21088191 6 129 2.0 0.5 1.2 2.7 143 chrX 21088048 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088191 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-738 2682 chrX 21241781 21241784 chrX 21241860 21241866 4 81 0.0 0.5 0.2 3.3 85 chrX 21241781 intron CG32521 - chrX 21241824 intron CG32521 - chrX 21241866 intron CG32521 - chrX_4_21240001 chrX_21240001 RAL-738 2683 chrX 21241791 21241805 chrX 21241856 21241872 4 65 0.0 0.5 0.2 3.3 81 chrX 21241791 intron CG32521 - chrX 21241832 intron CG32521 - chrX 21241872 intron CG32521 - chrX_4_21240001 chrX_21240001 RAL-738 2684 chrX 21328118 21328141 chrX 21328228 21328252 7 111 1.0 3.0 2.0 2.3 134 chrX 21328118 3` UTR CG1486 + chrX 21328185 intergenic CG1486 +,tty - chrX 21328252 intergenic CG1486 +,tty - chrX_7_21325001 chrX_21325001 RAL-738 2685 chrX 21334349 21334366 chrX 21334454 21334454 6 100 4.5 2.5 3.5 1.3 105 chrX 21334349 intron tty - chrX 21334402 intron tty - chrX 21334454 intron tty - chrX_6_21330001 chrX_21330001 RAL-738 2686 chrX 21358082 21358094 chrX 21358162 21358174 6 80 3.0 5.0 4.0 1.2 92 chrX 21358082 intergenic sol +,Sep1 + chrX 21358128 intergenic Sep1 +,sol + chrX 21358174 intergenic Sep1 +,sol + chrX_6_21355001 chrX_21355001 RAL-738 2687 chrX 21458690 21458722 chrX 21464126 21464153 Ivk 9 5435 7.0 4.5 5.8 1.3 5463 chrX 21458690 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464153 intergenic not near genes chrX_9_21460001 chrX_21460001 RAL-738 2688 chrX 21500562 21500588 chrX 21500763 21500789 7 200 0.0 3.5 1.8 2.5 227 chrX 21500562 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500789 intron CR45082 - chrX_7_21500001 chrX_21500001 RAL-738 2689 chrX 21516993 21517011 chrX 21517065 21517090 10 77 8.0 4.0 6.0 1.4 97 chrX 21516993 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517090 intron CR45082 - chrX_10_21515001 chrX_21515001 RAL-738 2690 chrX 21517013 21517020 chrX 21517064 21517099 4 71 6.5 4.0 5.2 0.6 86 chrX 21517013 intron CR45082 - chrX 21517056 intron CR45082 - chrX 21517099 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-738 2691 chrX 21565430 21565445 chrX 21565494 21565521 8 72 1.0 4.5 2.8 2.1 91 chrX 21565430 intergenic not near genes chrX 21565476 intergenic not near genes chrX 21565521 intergenic not near genes chrX_8_21565001 chrX_21565001 RAL-738 2692 chrX 21668258 21668289 chrX 21668342 21668374 11 83 2.0 3.0 2.5 3.1 116 chrX 21668258 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668374 intergenic not near genes chrX_11_21665001 chrX_21665001 RAL-738 2693 chrX 22448270 22448281 chrX 22448409 22448420 5 138 6.0 4.5 5.2 0.8 150 chrX 22448270 intron CG14615 - chrX 22448345 intron CG14615 - chrX 22448420 intron CG14615 - chrX_5_22445001 chrX_22445001 RAL-738 2694 chrX 22585513 22585530 chrX 22585595 22585612 4 82 2.5 2.5 2.5 1.1 99 chrX 22585513 intron Cda4 - chrX 22585562 intron Cda4 - chrX 22585612 intron Cda4 - chrX_4_22585001 chrX_22585001 RAL-738 2695 chrX 22677315 22677325 chrX 22677504 22677534 6 201 3.5 4.0 3.8 1.2 219 chrX 22677315 intron CR44997 + chrX 22677424 intron CR44997 + chrX 22677534 intron CR44997 + chrX_6_22675001 chrX_22675001 RAL-738 2696 chrX 22697494 22697525 chrX 22701791 22701813 Juan 16 4295 3.0 5.5 4.2 3.1 4319 chrX 22697494 intron CR44997 + chrX 22699654 intron CR44997 + chrX 22701813 intron CR44997 + chrX_16_22695001 chrX_22695001 RAL-738 2697 chrX 22784081 22784105 chrX 22784164 22784188 5 83 3.0 0.5 1.8 1.8 107 chrX 22784081 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784188 intron CR44997 + chrX_5_22780001 chrX_22780001 RAL-738 2698 chrX 22787963 22787987 chrX 22788098 22788128 6 133 6.5 3.0 4.8 1.0 165 chrX 22787963 intron CR44997 + chrX 22788046 intron CR44997 + chrX 22788128 intron CR44997 + chrX_6_22785001 chrX_22785001 RAL-738 2699 chrX 22867980 22868006 chrX 22868090 22868090 7 109 3.0 0.0 1.5 2.8 110 chrX 22867980 exon CG42346 + chrX 22868035 intron CG42346 + chrX 22868090 intron CG42346 + chrX_7_22865001 chrX_22865001 RAL-738 2700 chrX 22987132 22987134 chrX 22989776 22989793 Burdock 4 2654 1.0 2.5 1.8 1.4 2661 chrX 22987132 intron,intron stnA -,stnB - chrX 22988462 intron,intron stnA -,stnB - chrX 22989793 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-738 2701 chrX 22996309 22996338 chrX 23003543 23003572 roo 14 7232 3.5 6.0 4.8 2.4 7263 chrX 22996309 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_14_22995001 chrX_22995001 RAL-738 2702 chrY 311342 311346 chrY 311459 311463 5 117 2.0 1.0 1.5 2.0 121 chrY 311342 intergenic not near genes chrY 311402 intergenic not near genes chrY 311463 intergenic not near genes chrY_5_310001 chrY_310001 RAL-738 2703 chrY 975607 975816 chrY 975715 975896 4 107 140.5 163.5 152.0 0.0 289 chrY 975607 intergenic not near genes chrY 975752 intergenic not near genes chrY 975896 intergenic not near genes chrY_4_975001 chrY_975001 RAL-738 2704 chrY 1431368 1431372 chrY 1447404 1447408 Doc 5 16036 7.0 14.5 10.8 0.4 16040 chrY 1431368 intergenic not near genes chrY 1439388 intergenic not near genes chrY 1447408 intergenic not near genes chrY_5_1435001 chrY_1435001 RAL-738