SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46351 46367 chr2L 46428 46445 6 78 7.0 4.5 5.8 0.9 94 chr2L 46351 intron Cda5 - chr2L 46398 intron Cda5 - chr2L 46445 intron Cda5 - chr2L_6_45001 chr2L_45001 RAL-737 2 chr2L 47459 47490 chr2L 52564 52588 jockey 14 5102 5.5 7.5 6.5 1.9 5129 chr2L 47459 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52588 intron Cda5 - chr2L_14_50001 chr2L_50001 RAL-737 3 chr2L 62028 62040 chr2L 62285 62312 11 259 30.5 31.0 30.8 0.3 284 chr2L 62028 intron Cda5 - chr2L 62170 intron Cda5 - chr2L 62312 intron Cda5 - chr2L_11_60001 chr2L_60001 RAL-737 4 chr2L 79855 79859 chr2L 80181 80203 5 339 4.0 8.5 6.2 0.7 348 chr2L 79855 intergenic not near genes chr2L 80029 intergenic not near genes chr2L 80203 intergenic not near genes chr2L_5_80001 chr2L_80001 RAL-737 5 chr2L 89713 89742 chr2L 89789 89819 7 69 7.0 1.5 4.2 1.3 106 chr2L 89713 intergenic not near genes chr2L 89766 intergenic not near genes chr2L 89819 intergenic not near genes chr2L_7_85001 chr2L_85001 RAL-737 6 chr2L 172058 172086 chr2L 172139 172167 6 81 5.0 1.5 3.2 1.4 109 chr2L 172058 intron spen + chr2L 172112 intron spen + chr2L 172167 intron spen + chr2L_6_170001 chr2L_170001 RAL-737 7 chr2L 276560 276568 chr2L 276622 276630 7 71 4.5 3.5 4.0 1.4 70 chr2L 276560 intron CG17078 - chr2L 276595 intron CG17078 - chr2L 276630 intron CG17078 - chr2L_7_275001 chr2L_275001 RAL-737 8 chr2L 297686 297714 chr2L 297786 297814 7 99 9.0 2.5 5.8 1.0 128 chr2L 297686 intergenic Pi3K21B +,Hop + chr2L 297750 intergenic Pi3K21B +,Hop + chr2L 297814 intergenic Pi3K21B +,Hop + chr2L_7_295001 chr2L_295001 RAL-737 9 chr2L 325133 325153 chr2L 325210 325212 5 66 5.0 5.5 5.2 0.8 79 chr2L 325133 intron Plc21C + chr2L 325172 intron Plc21C + chr2L 325212 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-737 10 chr2L 347885 347919 chr2L 355385 355399 blood 16 7496 7.5 5.0 6.2 2.2 7514 chr2L 347885 3` UTR Plc21C + chr2L 351642 intron Plc21C + chr2L 355399 3` UTR Plc21C + chr2L_16_350001 chr2L_350001 RAL-737 11 chr2L 371446 371459 chr2L 371525 371538 5 79 4.0 4.0 4.0 1.0 92 chr2L 371446 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371538 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-737 12 chr2L 407950 407973 chr2L 408031 408054 4 81 7.5 5.5 6.5 0.5 104 chr2L 407950 3` UTR RpI135 + chr2L 408002 intergenic AP-2alpha -,RpI135 + chr2L 408054 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-737 13 chr2L 630311 630329 chr2L 630403 630421 4 92 3.0 2.0 2.5 1.1 110 chr2L 630311 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630421 intergenic not near genes chr2L_4_630001 chr2L_630001 RAL-737 14 chr2L 686923 686952 chr2L 695958 695980 roo 9 9031 0.5 2.5 1.5 3.6 9057 chr2L 686923 intron ds - chr2L 691452 intron ds - chr2L 695980 intron ds - chr2L_9_690001 chr2L_690001 RAL-737 15 chr2L 741247 741277 chr2L 744786 744823 9 3541 29.0 23.5 26.2 0.3 3576 chr2L 741247 intron Eaat2 - chr2L 743035 intron Eaat2 - chr2L 744823 intergenic Eaat2 - chr2L_9_740001 chr2L_740001 RAL-737 16 chr2L 770476 770494 chr2L 772244 772248 Bari1 6 1770 2.0 3.0 2.5 1.7 1772 chr2L 770476 intergenic not near genes chr2L 771362 intergenic not near genes chr2L 772248 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-737 17 chr2L 777460 777485 chr2L 777541 777556 4 77 10.0 2.5 6.2 0.6 96 chr2L 777460 intergenic not near genes chr2L 777508 intergenic not near genes chr2L 777556 intergenic not near genes chr2L_4_775001 chr2L_775001 RAL-737 18 chr2L 777486 777497 chr2L 777538 777554 5 54 6.0 2.5 4.2 1.0 68 chr2L 777486 intergenic not near genes chr2L 777520 intergenic not near genes chr2L 777554 intergenic not near genes chr2L_5_775001 chr2L_775001 RAL-737 19 chr2L 791452 791474 chr2L 791541 791568 9 92 1.5 3.0 2.2 2.8 116 chr2L 791452 intergenic not near genes chr2L 791510 intergenic not near genes chr2L 791568 intergenic not near genes chr2L_9_790001 chr2L_790001 RAL-737 20 chr2L 877841 877861 chr2L 877922 877926 13 78 3.5 2.5 3.0 3.2 85 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877884 3` UTR,intron CG15824 -,ninaA + chr2L 877926 3` UTR,intron CG15824 -,ninaA + chr2L_13_875001 chr2L_875001 RAL-737 21 chr2L 922467 922488 chr2L 922548 922569 7 81 4.5 4.5 4.5 1.3 102 chr2L 922467 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922569 intergenic CG4341 + chr2L_7_920001 chr2L_920001 RAL-737 22 chr2L 923523 923541 chr2L 923707 923725 9 185 13.5 17.5 15.5 0.5 202 chr2L 923523 intron CG4341 + chr2L 923624 intron CG4341 + chr2L 923725 intron CG4341 + chr2L_9_920001 chr2L_920001 RAL-737 23 chr2L 924592 924603 chr2L 924866 924876 5 274 10.0 2.0 6.0 0.7 284 chr2L 924592 intron CG4341 + chr2L 924734 intron CG4341 + chr2L 924876 intron CG4341 + chr2L_5_920001 chr2L_920001 RAL-737 24 chr2L 937750 937768 chr2L 938079 938108 4 332 3.0 6.5 4.8 0.7 358 chr2L 937750 intron CG4341 + chr2L 937929 intron CG4341 + chr2L 938108 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-737 25 chr2L 976878 976908 chr2L 984514 984544 roo 18 7634 2.5 3.0 2.8 4.7 7666 chr2L 976878 intergenic not near genes chr2L 980711 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_18_980001 chr2L_980001 RAL-737 26 chr2L 1035560 1035592 chr2L 1035637 1035669 11 71 3.0 4.0 3.5 2.4 109 chr2L 1035560 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-737 27 chr2L 1066093 1066124 chr2L 1066174 1066202 10 76 6.0 4.0 5.0 1.7 109 chr2L 1066093 intron S - chr2L 1066148 intron S - chr2L 1066202 intron S - chr2L_10_1065001 chr2L_1065001 RAL-737 28 chr2L 1137656 1137687 chr2L 1137836 1137867 8 179 3.0 4.0 3.5 1.8 211 chr2L 1137656 intron CG4577 + chr2L 1137762 intron CG4577 + chr2L 1137867 intron CG4577 + chr2L_8_1135001 chr2L_1135001 RAL-737 29 chr2L 1156860 1156894 chr2L 1156965 1156999 7 98 2.0 4.0 3.0 1.8 139 chr2L 1156860 intron capt - chr2L 1156930 intron capt - chr2L 1156999 intron capt - chr2L_7_1155001 chr2L_1155001 RAL-737 30 chr2L 1220137 1220160 chr2L 1227593 1227625 blood 8 7464 4.5 1.5 3.0 2.0 7488 chr2L 1220137 intron CG42329 + chr2L 1223881 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-737 31 chr2L 1237984 1238002 chr2L 1238068 1238083 9 83 3.5 3.0 3.2 2.1 99 chr2L 1237984 intergenic not near genes chr2L 1238034 intergenic not near genes chr2L 1238083 intergenic not near genes chr2L_9_1235001 chr2L_1235001 RAL-737 32 chr2L 1244411 1244433 chr2L 1244488 1244510 8 77 3.0 3.5 3.2 1.9 99 chr2L 1244411 intergenic not near genes chr2L 1244460 intergenic not near genes chr2L 1244510 intergenic not near genes chr2L_8_1240001 chr2L_1240001 RAL-737 33 chr2L 1267268 1267300 chr2L 1267526 1267552 5 253 3.5 4.0 3.8 1.0 284 chr2L 1267268 intron robo3 + chr2L 1267410 intron robo3 + chr2L 1267552 intron robo3 + chr2L_5_1265001 chr2L_1265001 RAL-737 34 chr2L 1320278 1320307 chr2L 1320356 1320385 7 73 5.0 6.5 5.8 1.0 107 chr2L 1320278 intergenic not near genes chr2L 1320332 intergenic not near genes chr2L 1320385 intergenic not near genes chr2L_7_1320001 chr2L_1320001 RAL-737 35 chr2L 1322035 1322050 chr2L 1322113 1322139 5 81 3.0 3.0 3.0 1.2 104 chr2L 1322035 intergenic not near genes chr2L 1322087 intergenic not near genes chr2L 1322139 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-737 36 chr2L 1450699 1450728 chr2L 1450784 1450804 7 83 5.5 3.5 4.5 1.3 105 chr2L 1450699 intergenic not near genes chr2L 1450752 intergenic not near genes chr2L 1450804 intergenic not near genes chr2L_7_1450001 chr2L_1450001 RAL-737 37 chr2L 1503402 1503421 chr2L 1503491 1503510 10 88 7.0 4.0 5.5 1.5 108 chr2L 1503402 intron CR44064 + chr2L 1503456 intron CR44064 + chr2L 1503510 intron CR44064 + chr2L_10_1500001 chr2L_1500001 RAL-737 38 chr2L 1503422 1503433 chr2L 1503490 1503522 7 80 2.5 4.0 3.2 1.7 100 chr2L 1503422 intron CR44064 + chr2L 1503472 intron CR44064 + chr2L 1503522 intron CR44064 + chr2L_7_1500001 chr2L_1500001 RAL-737 39 chr2L 1536501 1536526 chr2L 1536633 1536648 7 127 1.5 1.5 1.5 2.8 147 chr2L 1536501 intergenic not near genes chr2L 1536574 intergenic not near genes chr2L 1536648 intergenic not near genes chr2L_7_1535001 chr2L_1535001 RAL-737 40 chr2L 1541036 1541059 chr2L 1541114 1541136 4 78 8.5 3.5 6.0 0.6 100 chr2L 1541036 intergenic not near genes chr2L 1541086 intergenic not near genes chr2L 1541136 intergenic not near genes chr2L_4_1540001 chr2L_1540001 RAL-737 41 chr2L 1552684 1552698 chr2L 1552905 1552919 6 221 0.5 0.0 0.2 5.0 235 chr2L 1552684 intergenic not near genes chr2L 1552802 intergenic not near genes chr2L 1552919 intergenic not near genes chr2L_6_1550001 chr2L_1550001 RAL-737 42 chr2L 1570688 1570713 chr2L 1573560 1573585 F-element 10 2870 6.0 4.0 5.0 1.7 2897 chr2L 1570688 intron haf + chr2L 1572136 intron haf + chr2L 1573585 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-737 43 chr2L 1584153 1584170 chr2L 1584388 1584409 5 235 18.5 6.5 12.5 0.4 256 chr2L 1584153 intron haf + chr2L 1584281 intron haf + chr2L 1584409 intron haf + chr2L_5_1580001 chr2L_1580001 RAL-737 44 chr2L 1590956 1590970 chr2L 1591031 1591046 10 74 8.5 4.0 6.2 1.4 90 chr2L 1590956 intron haf + chr2L 1591001 intron haf + chr2L 1591046 intron haf + chr2L_10_1590001 chr2L_1590001 RAL-737 45 chr2L 1635395 1635425 chr2L 1635531 1635560 13 136 0.5 6.0 3.2 3.1 165 chr2L 1635395 intergenic not near genes chr2L 1635478 intergenic not near genes chr2L 1635560 intergenic not near genes chr2L_13_1635001 chr2L_1635001 RAL-737 46 chr2L 1678978 1679009 chr2L 1686443 1686474 blood 17 7461 2.5 10.0 6.2 2.4 7496 chr2L 1678978 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686474 intron chinmo + chr2L_17_1680001 chr2L_1680001 RAL-737 47 chr2L 1699264 1699292 chr2L 1699340 1699375 19 78 4.0 4.5 4.2 3.7 111 chr2L 1699264 3` UTR chinmo + chr2L 1699320 3` UTR chinmo + chr2L 1699375 3` UTR chinmo + chr2L_19_1695001 chr2L_1695001 RAL-737 48 chr2L 1711355 1711385 chr2L 1711679 1711682 mdg3 7 313 4.5 8.5 6.5 0.9 327 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711518 3` UTR frtz - chr2L 1711682 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-737 49 chr2L 1842297 1842319 chr2L 1842373 1842395 7 75 2.0 7.5 4.8 1.2 98 chr2L 1842297 intron wry + chr2L 1842346 intron wry + chr2L 1842395 intron wry + chr2L_7_1840001 chr2L_1840001 RAL-737 50 chr2L 2043473 2043501 chr2L 2043558 2043591 21 89 7.5 6.0 6.8 2.7 118 chr2L 2043473 3` UTR Su(dx) + chr2L 2043532 3` UTR Su(dx) + chr2L 2043591 3` UTR Su(dx) + chr2L_21_2040001 chr2L_2040001 RAL-737 51 chr2L 2100377 2100406 chr2L 2109524 2109530 roo 10 9144 8.0 2.5 5.2 1.6 9153 chr2L 2100377 intron dpr3 - chr2L 2104954 intron dpr3 - chr2L 2109530 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-737 52 chr2L 2299357 2299363 chr2L 2299408 2299441 8 68 5.5 4.0 4.8 1.4 84 chr2L 2299357 intergenic not near genes chr2L 2299399 intergenic not near genes chr2L 2299441 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-737 53 chr2L 2380432 2380464 chr2L 2380508 2380524 16 72 3.5 3.5 3.5 3.6 92 chr2L 2380432 3` UTR Atxn7 + chr2L 2380478 3` UTR Atxn7 + chr2L 2380524 intergenic Atxn7 + chr2L_16_2380001 chr2L_2380001 RAL-737 54 chr2L 2439599 2439609 chr2L 2439683 2439690 4 83 2.5 8.5 5.5 0.6 91 chr2L 2439599 intron dpp + chr2L 2439644 intron dpp + chr2L 2439690 intron dpp + chr2L_4_2435001 chr2L_2435001 RAL-737 55 chr2L 2480995 2481021 chr2L 2481162 2481186 9 163 4.5 6.5 5.5 1.4 191 chr2L 2480995 intergenic not near genes chr2L 2481090 intergenic not near genes chr2L 2481186 intergenic not near genes chr2L_9_2480001 chr2L_2480001 RAL-737 56 chr2L 2587833 2587848 chr2L 2587894 2587927 8 72 1.5 5.0 3.2 1.9 94 chr2L 2587833 intergenic not near genes chr2L 2587880 intergenic not near genes chr2L 2587927 intergenic not near genes chr2L_8_2585001 chr2L_2585001 RAL-737 57 chr2L 2637837 2637863 chr2L 2638234 2638260 5 396 4.0 3.5 3.8 1.0 423 chr2L 2637837 intergenic not near genes chr2L 2638048 intergenic not near genes chr2L 2638260 intergenic not near genes chr2L_5_2635001 chr2L_2635001 RAL-737 58 chr2L 2702601 2702636 chr2L 2702682 2702717 13 81 2.0 5.0 3.5 2.9 116 chr2L 2702601 intron CG31690 + chr2L 2702659 intron CG31690 + chr2L 2702717 intron CG31690 + chr2L_13_2700001 chr2L_2700001 RAL-737 59 chr2L 2713525 2713529 chr2L 2713618 2713623 5 97 12.5 5.0 8.8 0.5 98 chr2L 2713525 intron CG31690 + chr2L 2713574 intron CG31690 + chr2L 2713623 intron CG31690 + chr2L_5_2710001 chr2L_2710001 RAL-737 60 chr2L 2713534 2713550 chr2L 2713609 2713623 7 81 6.0 4.0 5.0 1.2 89 chr2L 2713534 intron CG31690 + chr2L 2713578 intron CG31690 + chr2L 2713623 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-737 61 chr2L 2724413 2724433 chr2L 2724489 2724509 9 75 3.0 6.0 4.5 1.6 96 chr2L 2724413 intergenic not near genes chr2L 2724461 intergenic not near genes chr2L 2724509 intergenic not near genes chr2L_9_2720001 chr2L_2720001 RAL-737 62 chr2L 2836145 2836167 chr2L 2836223 2836243 5 75 2.5 8.0 5.2 0.8 98 chr2L 2836145 intron CG3119 - chr2L 2836194 intron CG3119 - chr2L 2836243 intron CG3119 - chr2L_5_2835001 chr2L_2835001 RAL-737 63 chr2L 2895689 2895715 chr2L 2895774 2895801 11 84 3.0 2.5 2.8 2.9 112 chr2L 2895689 intron lilli + chr2L 2895745 intron lilli + chr2L 2895801 intron lilli + chr2L_11_2895001 chr2L_2895001 RAL-737 64 chr2L 2937413 2937451 chr2L 2937491 2937528 7 74 0.0 3.5 1.8 2.5 115 chr2L 2937413 intron lilli + chr2L 2937470 intron lilli + chr2L 2937528 intron lilli + chr2L_7_2935001 chr2L_2935001 RAL-737 65 chr2L 3026221 3026239 chr2L 3026877 3026898 7 658 42.5 21.5 32.0 0.2 677 chr2L 3026221 3` UTR CG3542 + chr2L 3026560 3` UTR CG3605 - chr2L 3026898 exon CG3605 - chr2L_7_3025001 chr2L_3025001 RAL-737 66 chr2L 3073029 3073059 chr2L 3078232 3078239 copia 16 5199 4.0 4.5 4.2 3.1 5210 chr2L 3073029 intron toc - chr2L 3075634 intron toc - chr2L 3078239 intron toc - chr2L_16_3075001 chr2L_3075001 RAL-737 67 chr2L 3103722 3103751 chr2L 3103799 3103824 13 75 0.5 5.5 3.0 3.2 102 chr2L 3103722 intron toc - chr2L 3103773 intron toc - chr2L 3103824 intron toc - chr2L_13_3100001 chr2L_3100001 RAL-737 68 chr2L 3108867 3108882 chr2L 3108944 3108959 11 76 6.5 8.0 7.2 1.3 92 chr2L 3108867 intron toc - chr2L 3108913 intron toc - chr2L 3108959 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-737 69 chr2L 3108883 3108898 chr2L 3108942 3108974 9 69 2.5 8.0 5.2 1.5 91 chr2L 3108883 intron toc - chr2L 3108928 intron toc - chr2L 3108974 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-737 70 chr2L 3192207 3192241 chr2L 3192318 3192335 17 108 1.0 9.0 5.0 2.8 128 chr2L 3192207 exon CG34393 - chr2L 3192271 intron CG34393 - chr2L 3192335 intron CG34393 - chr2L_17_3190001 chr2L_3190001 RAL-737 71 chr2L 3201001 3201031 chr2L 3201118 3201144 12 115 4.5 6.5 5.5 1.8 143 chr2L 3201001 intergenic not near genes chr2L 3201072 intergenic not near genes chr2L 3201144 intergenic not near genes chr2L_12_3200001 chr2L_3200001 RAL-737 72 chr2L 3202736 3202772 chr2L 3210165 3210199 mdg1 13 7427 2.0 3.0 2.5 3.7 7463 chr2L 3202736 intergenic not near genes chr2L 3206468 intergenic not near genes chr2L 3210199 intergenic CR45336 + chr2L_13_3205001 chr2L_3205001 RAL-737 73 chr2L 3251495 3251526 chr2L 3259060 3259091 springer 9 7565 2.5 3.5 3.0 2.2 7596 chr2L 3251495 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_9_3255001 chr2L_3255001 RAL-737 74 chr2L 3291236 3291257 chr2L 3291316 3291320 7 76 10.0 3.5 6.8 0.9 84 chr2L 3291236 intergenic CG9664 - chr2L 3291278 3` UTR CG9664 - chr2L 3291320 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-737 75 chr2L 3323262 3323283 chr2L 3323369 3323390 5 106 5.5 4.0 4.8 0.9 128 chr2L 3323262 intergenic CG8837 + chr2L 3323326 intergenic CG8837 + chr2L 3323390 intergenic CG8837 + chr2L_5_3320001 chr2L_3320001 RAL-737 76 chr2L 3388608 3388628 chr2L 3388848 3388869 pogo 9 241 2.5 6.5 4.5 1.6 261 chr2L 3388608 intergenic CG42460 - chr2L 3388738 intergenic CG42460 - chr2L 3388869 intergenic CG42460 -,CR44791 + chr2L_9_3385001 chr2L_3385001 RAL-737 77 chr2L 3505539 3505551 chr2L 3505663 3505675 7 124 7.0 3.5 5.2 1.1 136 chr2L 3505539 intron tim - chr2L 3505607 intron tim - chr2L 3505675 intron tim - chr2L_7_3505001 chr2L_3505001 RAL-737 78 chr2L 3582883 3582912 chr2L 3582955 3582989 13 75 2.5 5.0 3.8 2.7 106 chr2L 3582883 intergenic not near genes chr2L 3582936 intergenic not near genes chr2L 3582989 intergenic not near genes chr2L_13_3580001 chr2L_3580001 RAL-737 79 chr2L 3583790 3583801 chr2L 3583859 3583891 5 80 2.5 4.0 3.2 1.2 101 chr2L 3583790 intergenic not near genes chr2L 3583840 intergenic not near genes chr2L 3583891 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-737 80 chr2L 3603628 3603645 chr2L 3603724 3603741 6 92 4.5 9.5 7.0 0.8 113 chr2L 3603628 intergenic not near genes chr2L 3603684 intergenic not near genes chr2L 3603741 intergenic odd - chr2L_6_3600001 chr2L_3600001 RAL-737 81 chr2L 3603647 3603652 chr2L 3603721 3603721 7 85 2.0 9.0 5.5 1.1 74 chr2L 3603647 intergenic not near genes chr2L 3603684 intergenic not near genes chr2L 3603721 intergenic not near genes chr2L_7_3600001 chr2L_3600001 RAL-737 82 chr2L 3634101 3634120 chr2L 3634183 3634184 12 80 9.5 5.0 7.2 1.5 83 chr2L 3634101 intron for - chr2L 3634142 intron for - chr2L 3634184 intron for - chr2L_12_3630001 chr2L_3630001 RAL-737 83 chr2L 3634122 3634131 chr2L 3634181 3634213 12 75 6.5 5.0 5.8 1.8 91 chr2L 3634122 intron for - chr2L 3634168 intron for - chr2L 3634213 intron for - chr2L_12_3630001 chr2L_3630001 RAL-737 84 chr2L 3858867 3858899 chr2L 3858979 3859011 10 112 4.0 3.0 3.5 2.2 144 chr2L 3858867 intergenic not near genes chr2L 3858939 intergenic not near genes chr2L 3859011 intergenic not near genes chr2L_10_3855001 chr2L_3855001 RAL-737 85 chr2L 3891894 3891925 chr2L 3891977 3891999 6 83 5.0 5.0 5.0 1.0 105 chr2L 3891894 intron capu - chr2L 3891946 intron capu - chr2L 3891999 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-737 86 chr2L 4060165 4060195 chr2L 4060241 4060271 7 72 0.0 6.0 3.0 1.8 106 chr2L 4060165 intron ed + chr2L 4060218 intron ed + chr2L 4060271 intron ed + chr2L_7_4060001 chr2L_4060001 RAL-737 87 chr2L 4066037 4066051 chr2L 4068862 4068876 Juan 9 2824 8.5 2.5 5.5 1.4 2839 chr2L 4066037 intron ed + chr2L 4067456 intron ed + chr2L 4068876 intron ed + chr2L_9_4065001 chr2L_4065001 RAL-737 88 chr2L 4166377 4166411 chr2L 4166458 4166476 11 77 3.5 3.5 3.5 2.4 99 chr2L 4166377 intergenic Or24a - chr2L 4166426 intergenic Or24a - chr2L 4166476 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-737 89 chr2L 4184496 4184509 chr2L 4184815 4184828 6 319 0.5 7.5 4.0 1.2 332 chr2L 4184496 intergenic not near genes chr2L 4184662 intergenic not near genes chr2L 4184828 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-737 90 chr2L 4355470 4355500 chr2L 4355646 4355652 14 165 4.5 10.5 7.5 1.6 182 chr2L 4355470 intergenic not near genes chr2L 4355561 intergenic not near genes chr2L 4355652 intergenic not near genes chr2L_14_4355001 chr2L_4355001 RAL-737 91 chr2L 4601704 4601729 chr2L 4609145 4609167 mdg1 11 7439 6.5 7.5 7.0 1.4 7463 chr2L 4601704 intron dp - chr2L 4605436 intron dp - chr2L 4609167 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-737 92 chr2L 4601730 4601736 chr2L 4609144 4609170 mdg1 6 7429 4.0 7.5 5.8 0.9 7440 chr2L 4601730 intron dp - chr2L 4605450 intron dp - chr2L 4609170 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-737 93 chr2L 4649968 4649982 chr2L 4650102 4650116 7 134 5.0 4.5 4.8 1.2 148 chr2L 4649968 intergenic not near genes chr2L 4650042 intergenic not near genes chr2L 4650116 intergenic not near genes chr2L_7_4650001 chr2L_4650001 RAL-737 94 chr2L 4649988 4649998 chr2L 4650101 4650112 7 118 3.0 4.0 3.5 1.6 124 chr2L 4649988 intergenic not near genes chr2L 4650050 intergenic not near genes chr2L 4650112 intergenic not near genes chr2L_7_4650001 chr2L_4650001 RAL-737 95 chr2L 4661774 4661792 chr2L 4669518 4669536 opus 10 7738 7.0 2.0 4.5 1.8 7762 chr2L 4661774 intergenic not near genes chr2L 4665655 intergenic not near genes chr2L 4669536 intergenic not near genes chr2L_10_4665001 chr2L_4665001 RAL-737 96 chr2L 4718760 4718791 chr2L 4718855 4718886 19 88 3.5 2.0 2.8 5.0 126 chr2L 4718760 intron CG34351 + chr2L 4718823 intron CG34351 + chr2L 4718886 intron CG34351 + chr2L_19_4715001 chr2L_4715001 RAL-737 97 chr2L 4793309 4793318 chr2L 4793604 4793613 5 295 5.0 2.0 3.5 1.1 304 chr2L 4793309 intron CG15630 - chr2L 4793461 intron CG15630 - chr2L 4793613 intron CG15630 - chr2L_5_4790001 chr2L_4790001 RAL-737 98 chr2L 4858465 4858485 chr2L 4858553 4858573 9 87 2.5 0.0 1.2 4.1 108 chr2L 4858465 intron pog + chr2L 4858519 intron pog + chr2L 4858573 intron pog + chr2L_9_4855001 chr2L_4855001 RAL-737 99 chr2L 4862288 4862317 chr2L 4862359 4862371 5 65 5.5 6.0 5.8 0.7 83 chr2L 4862288 intron pog + chr2L 4862330 intron pog + chr2L 4862371 intron pog + chr2L_5_4860001 chr2L_4860001 RAL-737 100 chr2L 4918165 4918197 chr2L 4923238 4923270 jockey 13 5073 3.5 7.0 5.2 2.1 5105 chr2L 4918165 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923270 intron hoe1 - chr2L_13_4920001 chr2L_4920001 RAL-737 101 chr2L 5027959 5027993 chr2L 5028043 5028067 16 82 2.0 7.5 4.8 2.8 108 chr2L 5027959 intron vkg - chr2L 5028013 intron vkg - chr2L 5028067 intron vkg - chr2L_16_5025001 chr2L_5025001 RAL-737 102 chr2L 5092411 5092438 chr2L 5092498 5092525 9 87 3.0 4.0 3.5 2.0 114 chr2L 5092411 intron pgant5 - chr2L 5092468 intron pgant5 - chr2L 5092525 intron pgant5 - chr2L_9_5090001 chr2L_5090001 RAL-737 103 chr2L 5117299 5117308 chr2L 5117381 5117390 6 82 6.0 2.5 4.2 1.2 91 chr2L 5117299 intron Msp300 + chr2L 5117344 intron Msp300 + chr2L 5117390 intron Msp300 + chr2L_6_5115001 chr2L_5115001 RAL-737 104 chr2L 5117309 5117324 chr2L 5117380 5117406 6 78 3.5 2.5 3.0 1.5 97 chr2L 5117309 intron Msp300 + chr2L 5117358 intron Msp300 + chr2L 5117406 intron Msp300 + chr2L_6_5115001 chr2L_5115001 RAL-737 105 chr2L 5342779 5342803 chr2L 5345145 5345183 Doc 11 2376 2.0 4.0 3.0 2.8 2404 chr2L 5342779 intergenic not near genes chr2L 5343981 intergenic not near genes chr2L 5345183 intergenic not near genes chr2L_11_5340001 chr2L_5340001 RAL-737 106 chr2L 5392627 5392639 chr2L 5392708 5392720 6 81 2.5 2.5 2.5 1.7 93 chr2L 5392627 intergenic not near genes chr2L 5392674 intergenic not near genes chr2L 5392720 intergenic not near genes chr2L_6_5390001 chr2L_5390001 RAL-737 107 chr2L 5392641 5392654 chr2L 5392706 5392735 7 75 1.0 2.0 1.5 2.8 94 chr2L 5392641 intergenic not near genes chr2L 5392688 intergenic not near genes chr2L 5392735 intergenic not near genes chr2L_7_5390001 chr2L_5390001 RAL-737 108 chr2L 5500060 5500080 chr2L 5500146 5500166 6 83 4.0 4.0 4.0 1.2 106 chr2L 5500060 intergenic not near genes chr2L 5500113 intergenic not near genes chr2L 5500166 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-737 109 chr2L 5508528 5508560 chr2L 5508604 5508636 10 74 2.5 3.0 2.8 2.6 108 chr2L 5508528 intergenic not near genes chr2L 5508582 intergenic not near genes chr2L 5508636 intergenic not near genes chr2L_10_5505001 chr2L_5505001 RAL-737 110 chr2L 5516658 5516687 chr2L 5516737 5516766 16 76 3.5 7.0 5.2 2.6 108 chr2L 5516658 intergenic not near genes chr2L 5516712 intergenic not near genes chr2L 5516766 intergenic not near genes chr2L_16_5515001 chr2L_5515001 RAL-737 111 chr2L 5627700 5627714 chr2L 5627760 5627798 12 65 4.0 2.0 3.0 3.0 98 chr2L 5627700 intron CG31646 - chr2L 5627749 intron CG31646 - chr2L 5627798 intron CG31646 - chr2L_12_5625001 chr2L_5625001 RAL-737 112 chr2L 5762443 5762476 chr2L 5762528 5762540 8 82 6.0 5.5 5.8 1.2 97 chr2L 5762443 intergenic CG11030 +,obst-E - chr2L 5762492 intergenic obst-E -,CG11030 + chr2L 5762540 intergenic obst-E -,CG11030 + chr2L_8_5760001 chr2L_5760001 RAL-737 113 chr2L 5805971 5805992 chr2L 5806350 5806377 12 380 6.5 8.0 7.2 1.5 406 chr2L 5805971 intron CG11034 + chr2L 5806174 intron CG11034 + chr2L 5806377 intron CG11034 + chr2L_12_5805001 chr2L_5805001 RAL-737 114 chr2L 5814691 5814710 chr2L 5814774 5814793 7 81 4.5 3.5 4.0 1.4 102 chr2L 5814691 intergenic not near genes chr2L 5814742 intergenic not near genes chr2L 5814793 intergenic not near genes chr2L_7_5810001 chr2L_5810001 RAL-737 115 chr2L 5819671 5819708 chr2L 5819755 5819792 13 82 6.5 5.5 6.0 1.9 121 chr2L 5819671 intergenic not near genes chr2L 5819732 intergenic not near genes chr2L 5819792 intergenic not near genes chr2L_13_5815001 chr2L_5815001 RAL-737 116 chr2L 5827712 5827737 chr2L 5836719 5836744 roo 10 9007 8.5 6.0 7.2 1.2 9032 chr2L 5827712 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-737 117 chr2L 5886601 5886618 chr2L 5886693 5886712 5 93 3.5 0.0 1.8 1.8 111 chr2L 5886601 3` UTR CG9029 + chr2L 5886656 intergenic CG9029 + chr2L 5886712 intergenic CG9029 +,CR44577 - chr2L_5_5885001 chr2L_5885001 RAL-737 118 chr2L 5897596 5897628 chr2L 5897679 5897711 24 79 6.5 8.5 7.5 2.8 115 chr2L 5897596 intergenic not near genes chr2L 5897654 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_24_5895001 chr2L_5895001 RAL-737 119 chr2L 6050444 6050468 chr2L 6050548 6050572 9 104 7.0 8.0 7.5 1.1 128 chr2L 6050444 intergenic CG12393 +,CG9135 + chr2L 6050508 intergenic CG12393 +,CG9135 + chr2L 6050572 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-737 120 chr2L 6130769 6130789 chr2L 6130854 6130874 5 84 2.5 0.0 1.2 2.3 105 chr2L 6130769 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130822 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130874 intergenic CG9222 +,CG42730 -,tectonic - chr2L_5_6130001 chr2L_6130001 RAL-737 121 chr2L 6151637 6151665 chr2L 6151715 6151732 11 76 3.0 4.5 3.8 2.3 95 chr2L 6151637 intergenic Muc26B + chr2L 6151684 intergenic Muc26B + chr2L 6151732 intergenic Muc26B + chr2L_11_6150001 chr2L_6150001 RAL-737 122 chr2L 6268525 6268537 chr2L 6268611 6268623 8 85 6.5 0.0 3.2 1.9 98 chr2L 6268525 intron Ddr + chr2L 6268574 intron Ddr + chr2L 6268623 intron Ddr + chr2L_8_6265001 chr2L_6265001 RAL-737 123 chr2L 6283945 6283978 chr2L 6284055 6284084 4 105 0.0 3.5 1.8 1.4 139 chr2L 6283945 intron Ddr + chr2L 6284014 intron Ddr + chr2L 6284084 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-737 124 chr2L 6285334 6285369 chr2L 6285891 6285926 15 551 7.5 3.5 5.5 2.3 592 chr2L 6285334 intron Ddr + chr2L 6285630 intron Ddr + chr2L 6285926 intron Ddr + chr2L_15_6285001 chr2L_6285001 RAL-737 125 chr2L 6286394 6286421 chr2L 6286488 6286515 9 94 5.0 9.5 7.2 1.1 121 chr2L 6286394 intron Ddr + chr2L 6286454 intron Ddr + chr2L 6286515 intron Ddr + chr2L_9_6285001 chr2L_6285001 RAL-737 126 chr2L 6308312 6308345 chr2L 6308393 6308428 17 81 5.0 5.0 5.0 2.8 116 chr2L 6308312 intron Ddr + chr2L 6308370 intron Ddr + chr2L 6308428 intron,3` UTR Ddr +,CG43922 - chr2L_17_6305001 chr2L_6305001 RAL-737 127 chr2L 6349298 6349334 chr2L 6349458 6349493 11 153 3.5 7.0 5.2 1.8 195 chr2L 6349298 intergenic CG9498 - chr2L 6349396 3` UTR CG9498 - chr2L 6349493 3` UTR CG9498 - chr2L_11_6345001 chr2L_6345001 RAL-737 128 chr2L 6387903 6387917 chr2L 6387994 6388008 4 91 9.5 8.5 9.0 0.4 105 chr2L 6387903 intron CG42368 - chr2L 6387956 intron CG42368 - chr2L 6388008 intron CG42368 - chr2L_4_6385001 chr2L_6385001 RAL-737 129 chr2L 6387923 6387926 chr2L 6387992 6388017 4 84 2.5 7.5 5.0 0.7 94 chr2L 6387923 intron CG42368 - chr2L 6387970 intron CG42368 - chr2L 6388017 intron CG42368 - chr2L_4_6385001 chr2L_6385001 RAL-737 130 chr2L 6426855 6426885 chr2L 6445115 6445143 roo 14 18259 5.5 6.0 5.8 2.1 18288 chr2L 6426855 3` UTR CG9527 - chr2L 6435999 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_14_6435001 chr2L_6435001 RAL-737 131 chr2L 6448375 6448379 chr2L 6448465 6448469 4 90 0.0 0.0 0.0 4.0 94 chr2L 6448375 intergenic retm -,CG9527 - chr2L 6448422 intergenic retm -,CG9527 - chr2L 6448469 3` UTR retm - chr2L_4_6445001 chr2L_6445001 RAL-737 132 chr2L 6479686 6479709 chr2L 6479768 6479786 6 80 4.5 3.5 4.0 1.2 100 chr2L 6479686 intron Sec61alpha - chr2L 6479736 intron Sec61alpha - chr2L 6479786 intron Sec61alpha - chr2L_6_6475001 chr2L_6475001 RAL-737 133 chr2L 6513518 6513532 chr2L 6513577 6513607 4 71 1.0 6.5 3.8 0.8 89 chr2L 6513518 intron CG31637 + chr2L 6513562 intron CG31637 + chr2L 6513607 intron CG31637 + chr2L_4_6510001 chr2L_6510001 RAL-737 134 chr2L 6544375 6544389 chr2L 6544467 6544481 7 92 4.5 7.0 5.8 1.0 106 chr2L 6544375 intron eya - chr2L 6544428 intron eya - chr2L 6544481 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-737 135 chr2L 6740743 6740751 chr2L 6740830 6740837 7 87 0.0 7.0 3.5 1.6 94 chr2L 6740743 intergenic not near genes chr2L 6740790 intergenic not near genes chr2L 6740837 intergenic not near genes chr2L_7_6740001 chr2L_6740001 RAL-737 136 chr2L 6746097 6746118 chr2L 6746173 6746173 10 73 6.0 8.0 7.0 1.2 76 chr2L 6746097 intron CG11221 + chr2L 6746135 intron CG11221 + chr2L 6746173 intron CG11221 + chr2L_10_6745001 chr2L_6745001 RAL-737 137 chr2L 6790414 6790443 chr2L 6790864 6790893 14 447 29.0 20.5 24.8 0.5 479 chr2L 6790414 3` UTR nrv2 - chr2L 6790654 exon nrv2 - chr2L 6790893 exon nrv2 - chr2L_14_6790001 chr2L_6790001 RAL-737 138 chr2L 6788199 6788224 chr2L 6791730 6791755 8 3536 41.0 37.5 39.2 0.2 3556 chr2L 6788199 intergenic not near genes chr2L 6789977 3` UTR nrv2 - chr2L 6791755 exon nrv2 - chr2L_8_6785001 chr2L_6785001 RAL-737 139 chr2L 6799536 6799571 chr2L 6799624 6799625 10 84 3.0 2.0 2.5 2.9 89 chr2L 6799536 5` UTR CR43610 + chr2L 6799580 5` UTR CR43610 + chr2L 6799625 intergenic CR43610 +,CG17376 - chr2L_10_6795001 chr2L_6795001 RAL-737 140 chr2L 6836502 6836526 chr2L 6836584 6836608 10 81 8.5 4.0 6.2 1.4 106 chr2L 6836502 intron sens-2 + chr2L 6836555 intron sens-2 + chr2L 6836608 intron sens-2 + chr2L_10_6835001 chr2L_6835001 RAL-737 141 chr2L 6867766 6867775 chr2L 6867856 6867865 8 90 17.5 18.5 18.0 0.4 99 chr2L 6867766 intron Nha1 - chr2L 6867816 intron Nha1 - chr2L 6867865 intron Nha1 - chr2L_8_6865001 chr2L_6865001 RAL-737 142 chr2L 6867305 6867339 chr2L 6871625 6871659 20 4324 19.5 35.0 27.2 0.7 4354 chr2L 6867305 intron Nha1 - chr2L 6869482 intron Nha1 - chr2L 6871659 intron CR44915 - chr2L_20_6865001 chr2L_6865001 RAL-737 143 chr2L 6887500 6887504 chr2L 6887650 6887654 4 150 7.5 0.0 3.8 0.8 154 chr2L 6887500 intron Nlg2 + chr2L 6887577 intron Nlg2 + chr2L 6887654 intron Nlg2 + chr2L_4_6885001 chr2L_6885001 RAL-737 144 chr2L 6950160 6950190 chr2L 6950365 6950393 12 203 4.5 6.5 5.5 1.8 233 chr2L 6950160 5` UTR Gas41 - chr2L 6950276 intergenic Gas41 -,SA + chr2L 6950393 intergenic SA +,Gas41 - chr2L_12_6950001 chr2L_6950001 RAL-737 145 chr2L 7041605 7041625 chr2L 7041694 7041714 7 87 8.0 5.5 6.8 0.9 109 chr2L 7041605 intron milt + chr2L 7041660 intron milt + chr2L 7041714 intron milt + chr2L_7_7040001 chr2L_7040001 RAL-737 146 chr2L 7051158 7051164 chr2L 7051234 7051240 4 74 0.0 5.0 2.5 1.1 82 chr2L 7051158 intron milt + chr2L 7051199 intron milt + chr2L 7051240 intron milt + chr2L_4_7050001 chr2L_7050001 RAL-737 147 chr2L 7125790 7125810 chr2L 7125906 7125926 4 116 4.0 2.0 3.0 1.0 136 chr2L 7125790 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125926 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-737 148 chr2L 7126861 7126876 chr2L 7126940 7126955 7 79 7.5 0.0 3.8 1.5 94 chr2L 7126861 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126955 intron Pvf3 - chr2L_7_7125001 chr2L_7125001 RAL-737 149 chr2L 7197999 7198010 chr2L 7198078 7198087 8 78 6.5 4.5 5.5 1.2 88 chr2L 7197999 intron CG4502 - chr2L 7198043 intron CG4502 - chr2L 7198087 intron CG4502 - chr2L_8_7195001 chr2L_7195001 RAL-737 150 chr2L 7343328 7343359 chr2L 7350444 7350475 roo 8 7113 3.0 7.0 5.0 1.3 7147 chr2L 7343328 intron Wnt6 + chr2L 7346902 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-737 151 chr2L 7555215 7555234 chr2L 7555292 7555310 7 77 1.0 3.0 2.0 2.3 95 chr2L 7555215 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555310 intron RapGAP1 - chr2L_7_7555001 chr2L_7555001 RAL-737 152 chr2L 7567488 7567509 chr2L 7567562 7567586 9 76 7.5 5.5 6.5 1.2 98 chr2L 7567488 intron RapGAP1 - chr2L 7567537 intron RapGAP1 - chr2L 7567586 intron RapGAP1 - chr2L_9_7565001 chr2L_7565001 RAL-737 153 chr2L 7867564 7867587 chr2L 7867658 7867681 6 94 9.0 1.5 5.2 1.0 117 chr2L 7867564 intron Proc - chr2L 7867622 intron Proc - chr2L 7867681 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-737 154 chr2L 7867590 7867601 chr2L 7867657 7867695 6 89 5.0 1.5 3.2 1.4 105 chr2L 7867590 intron Proc - chr2L 7867642 intron Proc - chr2L 7867695 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-737 155 chr2L 7915195 7915212 chr2L 7915273 7915290 5 77 5.5 3.0 4.2 1.0 95 chr2L 7915195 intron Snoo - chr2L 7915242 intron Snoo - chr2L 7915290 intron Snoo - chr2L_5_7915001 chr2L_7915001 RAL-737 156 chr2L 7920728 7920739 chr2L 7920827 7920838 5 99 8.5 4.0 6.2 0.7 110 chr2L 7920728 intron Snoo - chr2L 7920783 intron Snoo - chr2L 7920838 intron Snoo - chr2L_5_7920001 chr2L_7920001 RAL-737 157 chr2L 7959040 7959062 chr2L 7960451 7960467 pogo 11 1408 8.5 0.0 4.2 2.1 1427 chr2L 7959040 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960467 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-737 158 chr2L 8003044 8003069 chr2L 8003116 8003151 9 79 3.5 4.0 3.8 1.9 107 chr2L 8003044 intron Wwox - chr2L 8003098 intron Wwox - chr2L 8003151 intron Wwox - chr2L_9_8000001 chr2L_8000001 RAL-737 159 chr2L 8013611 8013632 chr2L 8018815 8018831 copia 10 5201 13.0 0.0 6.5 1.3 5220 chr2L 8013611 intron Tg + chr2L 8016221 intron Tg + chr2L 8018831 intron Tg + chr2L_10_8015001 chr2L_8015001 RAL-737 160 chr2L 8018819 8018838 chr2L 8023603 8023622 Doc 10 4784 0.0 7.5 3.8 2.1 4803 chr2L 8018819 intron Tg + chr2L 8021220 intron Tg + chr2L 8023622 intron Tg + chr2L_10_8020001 chr2L_8020001 RAL-737 161 chr2L 8044104 8044124 chr2L 8044178 8044202 8 77 5.5 6.5 6.0 1.1 98 chr2L 8044104 intron CG7466 + chr2L 8044153 intron CG7466 + chr2L 8044202 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-737 162 chr2L 8164584 8164617 chr2L 8164666 8164699 12 80 6.0 6.5 6.2 1.7 115 chr2L 8164584 intron Piezo + chr2L 8164642 intron Piezo + chr2L 8164699 intron Piezo + chr2L_12_8160001 chr2L_8160001 RAL-737 163 chr2L 8171274 8171301 chr2L 8171355 8171382 11 81 0.0 4.0 2.0 3.7 108 chr2L 8171274 intron Piezo + chr2L 8171328 intron Piezo + chr2L 8171382 intron Piezo + chr2L_11_8170001 chr2L_8170001 RAL-737 164 chr2L 8184918 8184953 chr2L 8185009 8185044 14 89 3.0 5.5 4.2 2.7 126 chr2L 8184918 intron Piezo + chr2L 8184981 intron Piezo + chr2L 8185044 intron Piezo + chr2L_14_8180001 chr2L_8180001 RAL-737 165 chr2L 8233738 8233759 chr2L 8234278 8234300 6 541 0.5 2.5 1.5 2.4 562 chr2L 8233738 intron Pvr - chr2L 8234019 intron Pvr - chr2L 8234300 intron Pvr - chr2L_6_8230001 chr2L_8230001 RAL-737 166 chr2L 8244734 8244747 chr2L 8244856 8244869 5 121 1.5 4.5 3.0 1.2 135 chr2L 8244734 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244869 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-737 167 chr2L 8277856 8277869 chr2L 8277936 8277939 4 78 0.0 0.0 0.0 4.0 83 chr2L 8277856 intron Btk29A - chr2L 8277898 intron Btk29A - chr2L 8277939 intron Btk29A - chr2L_4_8275001 chr2L_8275001 RAL-737 168 chr2L 8285020 8285036 chr2L 8285096 8285111 10 76 6.5 4.5 5.5 1.5 91 chr2L 8285020 intron Btk29A - chr2L 8285066 intron Btk29A - chr2L 8285111 intron Btk29A - chr2L_10_8285001 chr2L_8285001 RAL-737 169 chr2L 8452419 8452452 chr2L 8461590 8461623 roo 17 9170 5.0 6.0 5.5 2.6 9204 chr2L 8452419 intron fu12 - chr2L 8457021 intron fu12 - chr2L 8461623 intron fu12 - chr2L_17_8455001 chr2L_8455001 RAL-737 170 chr2L 8507447 8507474 chr2L 8507527 8507556 13 80 3.5 3.5 3.5 2.9 109 chr2L 8507447 intergenic not near genes chr2L 8507502 intergenic not near genes chr2L 8507556 intergenic not near genes chr2L_13_8505001 chr2L_8505001 RAL-737 171 chr2L 8508993 8509002 chr2L 8509095 8509104 7 101 0.0 4.5 2.2 2.2 111 chr2L 8508993 intergenic CG13096 - chr2L 8509048 intergenic CG13096 - chr2L 8509104 3` UTR CG13096 - chr2L_7_8505001 chr2L_8505001 RAL-737 172 chr2L 8594464 8594497 chr2L 8601518 8601551 297 15 7054 3.0 2.0 2.5 4.3 7087 chr2L 8594464 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601551 intron Sema-1a + chr2L_15_8595001 chr2L_8595001 RAL-737 173 chr2L 8689700 8689732 chr2L 8689797 8689829 12 91 3.5 3.5 3.5 2.7 129 chr2L 8689700 intron Hnf4 - chr2L 8689764 intron Hnf4 - chr2L 8689829 exon Hnf4 - chr2L_12_8685001 chr2L_8685001 RAL-737 174 chr2L 8723116 8723147 chr2L 8731493 8731515 Tirant 23 8373 4.5 4.5 4.5 4.2 8399 chr2L 8723116 intron raw - chr2L 8727316 intron raw - chr2L 8731515 intron raw - chr2L_23_8725001 chr2L_8725001 RAL-737 175 chr2L 8772791 8772804 chr2L 8772876 8772878 4 82 6.0 0.0 3.0 1.0 87 chr2L 8772791 intergenic CG9466 -,CG9465 - chr2L 8772834 intergenic CG9466 -,CG9465 - chr2L 8772878 intergenic CG9466 - chr2L_4_8770001 chr2L_8770001 RAL-737 176 chr2L 8799808 8799826 chr2L 8799924 8799932 7 114 6.5 10.5 8.5 0.7 124 chr2L 8799808 intergenic not near genes chr2L 8799870 intergenic not near genes chr2L 8799932 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-737 177 chr2L 8815750 8815777 chr2L 8815824 8815832 10 71 3.5 5.5 4.5 1.8 82 chr2L 8815750 intergenic not near genes chr2L 8815791 intergenic not near genes chr2L 8815832 intergenic not near genes chr2L_10_8815001 chr2L_8815001 RAL-737 178 chr2L 8880064 8880065 chr2L 8880140 8880142 4 77 6.0 0.0 3.0 1.0 78 chr2L 8880064 intergenic not near genes chr2L 8880103 intergenic not near genes chr2L 8880142 intergenic not near genes chr2L_4_8880001 chr2L_8880001 RAL-737 179 chr2L 8956235 8956242 chr2L 8956312 8956319 4 77 5.0 0.0 2.5 1.1 84 chr2L 8956235 intron CG31886 - chr2L 8956277 intron CG31886 - chr2L 8956319 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-737 180 chr2L 8993214 8993241 chr2L 8993316 8993345 9 105 69.0 69.0 69.0 0.1 131 chr2L 8993214 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993345 3` UTR CG9555 + chr2L_9_8990001 chr2L_8990001 RAL-737 181 chr2L 9000280 9000313 chr2L 9007787 9007799 roo 16 7504 6.5 5.5 6.0 2.3 7519 chr2L 9000280 intergenic Try29F + chr2L 9004040 intergenic not near genes chr2L 9007799 intergenic not near genes chr2L_16_9000001 chr2L_9000001 RAL-737 182 chr2L 9040030 9040058 chr2L 9040117 9040141 18 84 2.0 4.5 3.2 4.3 111 chr2L 9040030 intergenic not near genes chr2L 9040086 intergenic not near genes chr2L 9040141 intergenic not near genes chr2L_18_9040001 chr2L_9040001 RAL-737 183 chr2L 9053407 9053430 chr2L 9053642 9053665 12 235 2.5 1.5 2.0 4.0 258 chr2L 9053407 exon CG31708 - chr2L 9053536 intron CG31708 - chr2L 9053665 intron CG31708 - chr2L_12_9050001 chr2L_9050001 RAL-737 184 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 18.0 37.0 27.5 0.3 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-737 185 chr2L 9116604 9116627 chr2L 9116713 9116721 9 106 3.5 3.5 3.5 2.0 117 chr2L 9116604 intergenic not near genes chr2L 9116662 intergenic not near genes chr2L 9116721 intergenic not near genes chr2L_9_9115001 chr2L_9115001 RAL-737 186 chr2L 9139028 9139034 chr2L 9139085 9139115 6 76 4.0 1.5 2.8 1.6 87 chr2L 9139028 intron CG32982 + chr2L 9139072 intron CG32982 + chr2L 9139115 intron CG32982 + chr2L_6_9135001 chr2L_9135001 RAL-737 187 chr2L 9147136 9147150 chr2L 9147225 9147258 8 101 0.0 5.5 2.8 2.1 122 chr2L 9147136 intron CG32982 + chr2L 9147197 intron CG32982 + chr2L 9147258 intron CG32982 + chr2L_8_9145001 chr2L_9145001 RAL-737 188 chr2L 9202068 9202089 chr2L 9202134 9202165 6 72 4.5 9.5 7.0 0.8 97 chr2L 9202068 intron tai + chr2L 9202116 intron tai + chr2L 9202165 intron tai + chr2L_6_9200001 chr2L_9200001 RAL-737 189 chr2L 9217969 9217976 chr2L 9222756 9222763 Doc 4 4786 10.5 4.5 7.5 0.5 4794 chr2L 9217969 intron tai + chr2L 9220366 intron tai + chr2L 9222763 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-737 190 chr2L 9217979 9218004 chr2L 9222750 9222762 Doc 11 4778 6.5 3.5 5.0 1.8 4783 chr2L 9217979 intron tai + chr2L 9220370 intron tai + chr2L 9222762 intron tai + chr2L_11_9220001 chr2L_9220001 RAL-737 191 chr2L 9225856 9225877 chr2L 9225946 9225967 6 90 2.0 3.0 2.5 1.7 111 chr2L 9225856 intron tai + chr2L 9225912 intron tai + chr2L 9225967 intron tai + chr2L_6_9225001 chr2L_9225001 RAL-737 192 chr2L 9251149 9251178 chr2L 9251245 9251257 8 91 5.5 7.5 6.5 1.1 108 chr2L 9251149 intergenic aust -,borr - chr2L 9251203 intergenic aust -,borr - chr2L 9251257 intergenic borr -,aust - chr2L_8_9250001 chr2L_9250001 RAL-737 193 chr2L 9280006 9280021 chr2L 9280100 9280115 5 94 0.5 6.0 3.2 1.2 109 chr2L 9280006 intron Ggamma30A + chr2L 9280060 intron Ggamma30A + chr2L 9280115 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-737 194 chr2L 9297379 9297393 chr2L 9297456 9297470 6 77 7.0 5.0 6.0 0.9 91 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297424 3` UTR Ggamma30A + chr2L 9297470 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-737 195 chr2L 9303513 9303544 chr2L 9303593 9303614 16 76 5.0 3.0 4.0 3.2 101 chr2L 9303513 intergenic not near genes chr2L 9303564 intergenic not near genes chr2L 9303614 intergenic not near genes chr2L_16_9300001 chr2L_9300001 RAL-737 196 chr2L 9305376 9305408 chr2L 9305762 9305793 11 380 2.0 5.5 3.8 2.3 417 chr2L 9305376 intergenic CR42844 - chr2L 9305584 intergenic not near genes chr2L 9305793 intergenic not near genes chr2L_11_9305001 chr2L_9305001 RAL-737 197 chr2L 9391666 9391705 chr2L 9391753 9391792 22 84 4.0 7.0 5.5 3.4 126 chr2L 9391666 intron Shawl - chr2L 9391729 intron Shawl - chr2L 9391792 intron Shawl - chr2L_22_9390001 chr2L_9390001 RAL-737 198 chr2L 9393496 9393527 chr2L 9396463 9396474 jockey 13 2964 2.5 8.5 5.5 2.0 2978 chr2L 9393496 intron Shawl - chr2L 9394985 intron Shawl - chr2L 9396474 intron Shawl - chr2L_13_9390001 chr2L_9390001 RAL-737 199 chr2L 9441341 9441355 chr2L 9441430 9441459 8 99 3.5 9.0 6.2 1.1 118 chr2L 9441341 intron numb + chr2L 9441400 intron numb + chr2L 9441459 intron numb + chr2L_8_9440001 chr2L_9440001 RAL-737 200 chr2L 9454978 9455005 chr2L 9455080 9455092 10 100 6.0 3.0 4.5 1.8 114 chr2L 9454978 intron numb + chr2L 9455035 intron numb + chr2L 9455092 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-737 201 chr2L 9474790 9474809 chr2L 9474884 9474903 5 94 1.5 6.5 4.0 1.0 113 chr2L 9474790 intergenic not near genes chr2L 9474846 intergenic not near genes chr2L 9474903 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-737 202 chr2L 9493262 9493275 chr2L 9493336 9493354 7 81 4.0 4.0 4.0 1.4 92 chr2L 9493262 intron Gdi - chr2L 9493308 intron Gdi - chr2L 9493354 intron Gdi - chr2L_7_9490001 chr2L_9490001 RAL-737 203 chr2L 9567712 9567737 chr2L 9567787 9567814 12 74 5.5 6.5 6.0 1.7 102 chr2L 9567712 intergenic CR44149 - chr2L 9567763 intergenic CR44149 - chr2L 9567814 intergenic CR44149 - chr2L_12_9565001 chr2L_9565001 RAL-737 204 chr2L 9619654 9619658 chr2L 9619724 9619738 5 78 0.0 4.5 2.2 1.6 84 chr2L 9619654 intron GlcAT-S + chr2L 9619696 intron GlcAT-S + chr2L 9619738 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-737 205 chr2L 9770771 9770801 chr2L 9770868 9770875 1360 13 91 2.5 5.0 3.8 2.7 104 chr2L 9770771 intron ppk18 - chr2L 9770823 intron ppk18 - chr2L 9770875 intron ppk18 - chr2L_13_9770001 chr2L_9770001 RAL-737 206 chr2L 9775982 9776015 chr2L 9776064 9776097 17 82 3.5 3.5 3.5 3.8 115 chr2L 9775982 intergenic not near genes chr2L 9776040 intergenic not near genes chr2L 9776097 intergenic not near genes chr2L_17_9775001 chr2L_9775001 RAL-737 207 chr2L 9815482 9815494 chr2L 9815551 9815569 4 70 0.0 10.5 5.2 0.6 87 chr2L 9815482 intron nAChRalpha6 - chr2L 9815526 intron nAChRalpha6 - chr2L 9815569 intron nAChRalpha6 - chr2L_4_9815001 chr2L_9815001 RAL-737 208 chr2L 9837433 9837446 chr2L 9837511 9837521 4 77 4.5 2.0 3.2 1.0 88 chr2L 9837433 intron nAChRalpha6 - chr2L 9837477 intron nAChRalpha6 - chr2L 9837521 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-737 209 chr2L 9881006 9881039 chr2L 9881083 9881117 16 75 6.0 10.0 8.0 1.8 111 chr2L 9881006 intron nAChRalpha6 - chr2L 9881062 intron nAChRalpha6 - chr2L 9881117 intron nAChRalpha6 - chr2L_16_9880001 chr2L_9880001 RAL-737 210 chr2L 9892501 9892534 chr2L 9892577 9892610 11 70 6.0 5.0 5.5 1.7 109 chr2L 9892501 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_11_9890001 chr2L_9890001 RAL-737 211 chr2L 9973735 9973754 chr2L 9980843 9980854 HMS-Beagle 6 7106 8.0 6.0 7.0 0.8 7119 chr2L 9973735 intergenic not near genes chr2L 9977294 intergenic not near genes chr2L 9980854 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-737 212 chr2L 9982201 9982231 chr2L 9982304 9982334 15 103 0.0 5.5 2.8 3.9 133 chr2L 9982201 intergenic not near genes chr2L 9982268 intergenic not near genes chr2L 9982334 intergenic not near genes chr2L_15_9980001 chr2L_9980001 RAL-737 213 chr2L 9986364 9986381 chr2L 9986444 9986468 6 80 2.5 10.0 6.2 0.8 104 chr2L 9986364 intron bib + chr2L 9986416 intron bib + chr2L 9986468 intron bib + chr2L_6_9985001 chr2L_9985001 RAL-737 214 chr2L 10051724 10051749 chr2L 10051809 10051834 6 84 5.5 2.5 4.0 1.2 110 chr2L 10051724 5` UTR CR44874 + chr2L 10051779 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-737 215 chr2L 10095631 10095663 chr2L 10095709 10095716 18 76 4.5 0.5 2.5 5.1 85 chr2L 10095631 intron CG44153 - chr2L 10095674 intron CG44153 - chr2L 10095716 intron CG44153 - chr2L_18_10095001 chr2L_10095001 RAL-737 216 chr2L 10136248 10136271 chr2L 10136330 10136353 5 82 4.5 1.5 3.0 1.2 105 chr2L 10136248 intron CG44153 - chr2L 10136300 intron CG44153 - chr2L 10136353 intron CG44153 - chr2L_5_10135001 chr2L_10135001 RAL-737 217 chr2L 10152105 10152135 chr2L 10152464 10152491 9 357 5.0 6.0 5.5 1.4 386 chr2L 10152105 intron,intron CG44153 -,CG4839 + chr2L 10152298 intron,intron CG44153 -,CG4839 + chr2L 10152491 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-737 218 chr2L 10156327 10156340 chr2L 10163797 10163803 blood 4 7467 5.0 6.0 5.5 0.6 7476 chr2L 10156327 intron,3` UTR CG44153 -,CG4839 + chr2L 10160065 intron CG44153 - chr2L 10163803 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-737 219 chr2L 10156342 10156355 chr2L 10163790 10163814 blood 5 7460 3.5 5.5 4.5 0.9 7472 chr2L 10156342 intron,3` UTR CG44153 -,CG4839 + chr2L 10160078 intron CG44153 - chr2L 10163814 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-737 220 chr2L 10171172 10171185 chr2L 10171264 10171283 12 97 3.0 4.0 3.5 2.7 111 chr2L 10171172 intron CG44153 - chr2L 10171228 intron CG44153 - chr2L 10171283 intron CG44153 - chr2L_12_10170001 chr2L_10170001 RAL-737 221 chr2L 10209847 10209862 chr2L 10209924 10209939 11 77 4.0 2.0 3.0 2.8 92 chr2L 10209847 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209893 3` UTR CG5727 - chr2L 10209939 3` UTR CG5727 - chr2L_11_10205001 chr2L_10205001 RAL-737 222 chr2L 10235785 10235796 chr2L 14401346 14401350 4 4165558 4.0 7.5 5.8 0.6 4165565 chr2L 10235785 3` UTR mthl15 - chr2L 12318568 intergenic not near genes chr2L 14401350 intron elB - chr2L_4_12315001 chr2L_12315001 RAL-737 223 chr2L 10336061 10336080 chr2L 10336151 10336157 4 89 3.0 6.5 4.8 0.7 96 chr2L 10336061 exon GATAd + chr2L 10336109 exon GATAd + chr2L 10336157 exon GATAd + chr2L_4_10335001 chr2L_10335001 RAL-737 224 chr2L 10348399 10348416 chr2L 10348482 10348497 7 81 0.0 3.5 1.8 2.5 98 chr2L 10348399 intron CG34367 - chr2L 10348448 intron CG34367 - chr2L 10348497 intron CG34367 - chr2L_7_10345001 chr2L_10345001 RAL-737 225 chr2L 10474388 10474414 chr2L 10474469 10474471 8 76 0.5 1.0 0.8 4.4 83 chr2L 10474388 intergenic RluA-1 - chr2L 10474430 intergenic RluA-1 - chr2L 10474471 intergenic RluA-1 - chr2L_8_10470001 chr2L_10470001 RAL-737 226 chr2L 10480311 10480336 chr2L 10480389 10480414 11 77 2.5 2.0 2.2 3.4 103 chr2L 10480311 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480414 intron RluA-2 + chr2L_11_10480001 chr2L_10480001 RAL-737 227 chr2L 10515360 10515391 chr2L 10515453 10515483 17 93 1.5 3.0 2.2 5.3 123 chr2L 10515360 intron,intron CG45083 -,Fatp - chr2L 10515422 intron,intron CG45083 -,Fatp - chr2L 10515483 intron,intron CG45083 -,Fatp - chr2L_17_10515001 chr2L_10515001 RAL-737 228 chr2L 10563910 10563942 chr2L 10564003 10564018 5 84 0.5 3.5 2.0 1.7 108 chr2L 10563910 intron Trim9 + chr2L 10563964 intron Trim9 + chr2L 10564018 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-737 229 chr2L 10580790 10580823 chr2L 10580871 10580904 11 77 2.5 4.5 3.5 2.4 114 chr2L 10580790 intron Trim9 + chr2L 10580847 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_11_10580001 chr2L_10580001 RAL-737 230 chr2L 10592854 10592872 chr2L 10600516 10600534 opus 9 7661 4.0 6.5 5.2 1.5 7680 chr2L 10592854 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600534 intron Trim9 + chr2L_9_10595001 chr2L_10595001 RAL-737 231 chr2L 10628092 10628118 chr2L 10628181 10628207 14 88 6.5 4.5 5.5 2.2 115 chr2L 10628092 intergenic Trim9 + chr2L 10628150 intergenic Trim9 + chr2L 10628207 intergenic Trim9 + chr2L_14_10625001 chr2L_10625001 RAL-737 232 chr2L 10631252 10631278 chr2L 10631343 10631369 14 91 2.5 0.5 1.5 5.6 117 chr2L 10631252 intron CG7329 - chr2L 10631310 intron CG7329 - chr2L 10631369 intron CG7329 - chr2L_14_10630001 chr2L_10630001 RAL-737 233 chr2L 10803792 10803802 chr2L 10803875 10803888 5 85 2.5 8.5 5.5 0.8 96 chr2L 10803792 intergenic Nos - chr2L 10803840 intergenic Nos - chr2L 10803888 intergenic Nos - chr2L_5_10800001 chr2L_10800001 RAL-737 234 chr2L 10862846 10862879 chr2L 10864451 10864465 Rt1c 12 1601 5.5 6.0 5.8 1.8 1619 chr2L 10862846 3` UTR CR43807 - chr2L 10863656 intron CR43807 - chr2L 10864465 3` UTR CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-737 235 chr2L 10919800 10919834 chr2L 10919889 10919923 14 89 4.0 2.5 3.2 3.3 123 chr2L 10919800 intron dpr2 - chr2L 10919862 intron dpr2 - chr2L 10919923 intron dpr2 - chr2L_14_10915001 chr2L_10915001 RAL-737 236 chr2L 10927791 10927825 chr2L 10927873 10927883 10 79 5.5 2.0 3.8 2.1 92 chr2L 10927791 intron dpr2 - chr2L 10927837 intron dpr2 - chr2L 10927883 intron dpr2 - chr2L_10_10925001 chr2L_10925001 RAL-737 237 chr2L 10946960 10946977 chr2L 10956175 10956192 roo 7 9213 3.0 9.5 6.2 1.0 9232 chr2L 10946960 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-737 238 chr2L 11056564 11056600 chr2L 11056646 11056682 20 80 1.5 4.0 2.8 5.3 118 chr2L 11056564 intron Samuel - chr2L 11056623 intron Samuel - chr2L 11056682 intron Samuel - chr2L_20_11055001 chr2L_11055001 RAL-737 239 chr2L 11224056 11224077 chr2L 11224167 11224173 10 107 11.0 4.0 7.5 1.2 117 chr2L 11224056 intron ab + chr2L 11224114 intron ab + chr2L 11224173 intron ab + chr2L_10_11220001 chr2L_11220001 RAL-737 240 chr2L 11224079 11224089 chr2L 11224166 11224200 12 104 7.5 4.0 5.8 1.8 121 chr2L 11224079 intron ab + chr2L 11224140 intron ab + chr2L 11224200 intron ab + chr2L_12_11220001 chr2L_11220001 RAL-737 241 chr2L 11249896 11249917 chr2L 11250023 11250024 7 124 4.0 4.5 4.2 1.3 128 chr2L 11249896 intron ab + chr2L 11249960 intron ab + chr2L 11250024 intron ab + chr2L_7_11245001 chr2L_11245001 RAL-737 242 chr2L 11292375 11292408 chr2L 11292457 11292490 12 76 2.0 6.0 4.0 2.4 115 chr2L 11292375 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_12_11290001 chr2L_11290001 RAL-737 243 chr2L 11293726 11293751 chr2L 11293863 11293888 8 137 0.0 9.0 4.5 1.5 162 chr2L 11293726 intergenic not near genes chr2L 11293807 intergenic not near genes chr2L 11293888 intergenic not near genes chr2L_8_11290001 chr2L_11290001 RAL-737 244 chr2L 11309008 11309020 chr2L 11309116 11309128 8 108 6.0 1.5 3.8 1.7 120 chr2L 11309008 intergenic not near genes chr2L 11309068 intergenic not near genes chr2L 11309128 intergenic not near genes chr2L_8_11305001 chr2L_11305001 RAL-737 245 chr2L 11357977 11358013 chr2L 11358055 11358091 9 78 4.5 4.5 4.5 1.6 114 chr2L 11357977 intergenic not near genes chr2L 11358034 intergenic not near genes chr2L 11358091 intergenic not near genes chr2L_9_11355001 chr2L_11355001 RAL-737 246 chr2L 11418655 11418684 chr2L 11418734 11418743 8 72 4.5 4.0 4.2 1.5 88 chr2L 11418655 intergenic not near genes chr2L 11418699 intergenic not near genes chr2L 11418743 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-737 247 chr2L 11537756 11537772 chr2L 11537873 11537889 6 117 3.5 4.5 4.0 1.2 133 chr2L 11537756 intergenic not near genes chr2L 11537822 intergenic not near genes chr2L 11537889 intergenic not near genes chr2L_6_11535001 chr2L_11535001 RAL-737 248 chr2L 11540596 11540614 chr2L 11547991 11548016 Tabor 7 7401 2.5 10.5 6.5 0.9 7420 chr2L 11540596 intergenic not near genes chr2L 11544306 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_7_11540001 chr2L_11540001 RAL-737 249 chr2L 11563654 11563670 chr2L 11568839 11568874 copia 12 5200 4.0 4.5 4.2 2.3 5220 chr2L 11563654 intergenic not near genes chr2L 11566264 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-737 250 chr2L 11636288 11636299 chr2L 11636373 11636388 4 86 0.0 5.0 2.5 1.1 100 chr2L 11636288 intergenic not near genes chr2L 11636338 intergenic not near genes chr2L 11636388 intergenic not near genes chr2L_4_11635001 chr2L_11635001 RAL-737 251 chr2L 11675575 11675588 chr2L 11675655 11675667 8 80 2.0 7.0 4.5 1.5 92 chr2L 11675575 intergenic not near genes chr2L 11675621 intergenic not near genes chr2L 11675667 intergenic not near genes chr2L_8_11675001 chr2L_11675001 RAL-737 252 chr2L 11713510 11713533 chr2L 11720978 11721000 blood 5 7468 8.0 7.0 7.5 0.6 7490 chr2L 11713510 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721000 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-737 253 chr2L 11769948 11769962 chr2L 11770024 11770037 5 75 3.0 5.0 4.0 1.0 89 chr2L 11769948 intergenic not near genes chr2L 11769992 intergenic not near genes chr2L 11770037 intergenic not near genes chr2L_5_11765001 chr2L_11765001 RAL-737 254 chr2L 11778783 11778814 chr2L 11778863 11778873 11 74 6.0 3.5 4.8 1.9 90 chr2L 11778783 intergenic not near genes chr2L 11778828 intergenic not near genes chr2L 11778873 intergenic not near genes chr2L_11_11775001 chr2L_11775001 RAL-737 255 chr2L 11892551 11892820 chr2L 11892640 11892890 10 85 3.0 7.0 5.0 1.7 339 chr2L 11892551 intron Pde1c - chr2L 11892720 intron Pde1c - chr2L 11892890 intron Pde1c - chr2L_10_11890001 chr2L_11890001 RAL-737 256 chr2L 11941723 11941749 chr2L 11941839 11941865 5 116 2.5 2.5 2.5 1.4 142 chr2L 11941723 intergenic not near genes chr2L 11941794 intergenic not near genes chr2L 11941865 intergenic not near genes chr2L_5_11940001 chr2L_11940001 RAL-737 257 chr2L 11951970 11951990 chr2L 11952058 11952078 6 87 6.0 2.5 4.2 1.2 108 chr2L 11951970 intergenic CR43314 - chr2L 11952024 intergenic CR43314 - chr2L 11952078 intergenic CR43314 - chr2L_6_11950001 chr2L_11950001 RAL-737 258 chr2L 12067333 12067361 chr2L 12074385 12074413 297 4 7052 1.0 4.5 2.8 1.1 7080 chr2L 12067333 intergenic not near genes chr2L 12070873 intergenic not near genes chr2L 12074413 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-737 259 chr2L 12123253 12123267 chr2L 12123338 12123352 8 85 3.5 7.0 5.2 1.3 99 chr2L 12123253 intron CG17211 + chr2L 12123302 intron CG17211 + chr2L 12123352 intron CG17211 + chr2L_8_12120001 chr2L_12120001 RAL-737 260 chr2L 12132732 12132750 chr2L 12132818 12132836 7 86 2.5 2.0 2.2 2.2 104 chr2L 12132732 intron rho-6 - chr2L 12132784 intron rho-6 - chr2L 12132836 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-737 261 chr2L 12254031 12254054 chr2L 12254123 12254145 11 90 2.0 0.0 1.0 5.5 114 chr2L 12254031 intron aret + chr2L 12254088 intron aret + chr2L 12254145 intron aret + chr2L_11_12250001 chr2L_12250001 RAL-737 262 chr2L 12305410 12305436 chr2L 12305498 12305524 5 86 2.5 5.0 3.8 1.0 114 chr2L 12305410 intron aret + chr2L 12305467 intron aret + chr2L 12305524 intron aret + chr2L_5_12305001 chr2L_12305001 RAL-737 263 chr2L 12529263 12529448 chr2L 12529378 12529509 13 81 4.0 3.0 3.5 2.9 246 chr2L 12529263 intron bun - chr2L 12529386 intron bun - chr2L 12529509 intron bun - chr2L_13_12525001 chr2L_12525001 RAL-737 264 chr2L 12530781 12530791 chr2L 12531133 12531144 8 352 6.5 5.0 5.8 1.2 363 chr2L 12530781 intron bun - chr2L 12530962 intron bun - chr2L 12531144 intron bun - chr2L_8_12530001 chr2L_12530001 RAL-737 265 chr2L 12530793 12530810 chr2L 12531131 12531163 11 352 3.0 4.5 3.8 2.3 370 chr2L 12530793 intron bun - chr2L 12530978 intron bun - chr2L 12531163 intron bun - chr2L_11_12530001 chr2L_12530001 RAL-737 266 chr2L 12558320 12558353 chr2L 12565449 12565482 HMS-Beagle 14 7125 2.0 7.0 4.5 2.5 7162 chr2L 12558320 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_14_12560001 chr2L_12560001 RAL-737 267 chr2L 12642214 12642232 chr2L 12642442 12642456 7 226 1.5 2.5 2.0 2.3 242 chr2L 12642214 intron Ref2 - chr2L 12642335 intron Ref2 - chr2L 12642456 intron Ref2 - chr2L_7_12640001 chr2L_12640001 RAL-737 268 chr2L 12731055 12731067 chr2L 12735822 12735834 F-element 8 4767 5.0 5.5 5.2 1.3 4779 chr2L 12731055 intron MRP + chr2L 12733444 intron MRP + chr2L 12735834 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-737 269 chr2L 12731069 12731088 chr2L 12735819 12735827 F-element 6 4756 1.5 4.5 3.0 1.5 4758 chr2L 12731069 intron MRP + chr2L 12733448 intron MRP + chr2L 12735827 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-737 270 chr2L 12739173 12739193 chr2L 12743954 12743973 Doc 14 4781 4.0 4.5 4.2 2.7 4800 chr2L 12739173 exon MRP + chr2L 12741573 intron MRP + chr2L 12743973 intron MRP + chr2L_14_12740001 chr2L_12740001 RAL-737 271 chr2L 12739195 12739207 chr2L 12743951 12743973 Doc 7 4764 3.0 4.0 3.5 1.6 4778 chr2L 12739195 intron MRP + chr2L 12741584 intron MRP + chr2L 12743973 intron MRP + chr2L_7_12740001 chr2L_12740001 RAL-737 272 chr2L 12751309 12751338 chr2L 12751392 12751420 11 77 1.5 3.5 2.5 3.1 111 chr2L 12751309 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_11_12750001 chr2L_12750001 RAL-737 273 chr2L 12763863 12763873 chr2L 12764063 12764073 BS 5 200 1.0 3.0 2.0 1.7 210 chr2L 12763863 intergenic not near genes chr2L 12763968 intergenic not near genes chr2L 12764073 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-737 274 chr2L 12766761 12766775 chr2L 12766839 12766848 6 77 1.5 2.5 2.0 2.0 87 chr2L 12766761 intergenic not near genes chr2L 12766804 intergenic not near genes chr2L 12766848 intergenic not near genes chr2L_6_12765001 chr2L_12765001 RAL-737 275 chr2L 12791620 12791637 chr2L 12795276 12795312 F-element 6 3668 3.0 3.0 3.0 1.5 3692 chr2L 12791620 intergenic not near genes chr2L 12793466 intergenic not near genes chr2L 12795312 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-737 276 chr2L 12861693 12861730 chr2L 12863160 12863164 hobo 15 1459 5.5 3.0 4.2 2.9 1471 chr2L 12861693 intergenic not near genes chr2L 12862428 intergenic not near genes chr2L 12863164 intergenic not near genes chr2L_15_12860001 chr2L_12860001 RAL-737 277 chr2L 12890757 12890774 chr2L 12890828 12890861 7 83 0.0 3.0 1.5 2.8 104 chr2L 12890757 intergenic not near genes chr2L 12890809 intergenic not near genes chr2L 12890861 intergenic not near genes chr2L_7_12890001 chr2L_12890001 RAL-737 278 chr2L 12891947 12891955 chr2L 12892028 12892040 6 84 0.0 7.5 3.8 1.2 93 chr2L 12891947 intergenic not near genes chr2L 12891994 intergenic not near genes chr2L 12892040 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-737 279 chr2L 12949266 12949284 chr2L 12949345 12949349 5 78 3.0 3.0 3.0 1.2 83 chr2L 12949266 intergenic not near genes chr2L 12949308 intergenic not near genes chr2L 12949349 intergenic not near genes chr2L_5_12945001 chr2L_12945001 RAL-737 280 chr2L 13398718 13398749 chr2L 13398798 13398829 8 80 2.5 2.0 2.2 2.5 111 chr2L 13398718 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398774 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398829 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_8_13395001 chr2L_13395001 RAL-737 281 chr2L 13405649 13405672 chr2L 13410446 13410469 Doc 9 4797 5.5 9.0 7.2 1.1 4820 chr2L 13405649 exon CG7110 + chr2L 13408059 intron CG7110 + chr2L 13410469 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-737 282 chr2L 13405675 13405683 chr2L 13410444 13410455 Doc 6 4784 3.0 9.0 6.0 0.9 4780 chr2L 13405675 exon CG7110 + chr2L 13408065 intron CG7110 + chr2L 13410455 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-737 283 chr2L 13449462 13449496 chr2L 13456898 13456932 Quasimodo 9 7436 3.5 5.5 4.5 1.6 7470 chr2L 13449462 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453197 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_9_13450001 chr2L_13450001 RAL-737 284 chr2L 13481451 13481477 chr2L 13482058 13482078 jockey 11 605 6.5 6.0 6.2 1.5 627 chr2L 13481451 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_11_13480001 chr2L_13480001 RAL-737 285 chr2L 13560403 13560420 chr2L 13565224 13565241 F-element 8 4821 3.5 5.0 4.2 1.5 4838 chr2L 13560403 intron kuz + chr2L 13562822 intron kuz + chr2L 13565241 intron kuz + chr2L_8_13560001 chr2L_13560001 RAL-737 286 chr2L 13608042 13608077 chr2L 13608150 13608160 16 105 7.0 3.0 5.0 2.7 118 chr2L 13608042 intron kuz + chr2L 13608101 intron kuz + chr2L 13608160 intron kuz + chr2L_16_13605001 chr2L_13605001 RAL-737 287 chr2L 13620107 13620140 chr2L 13620332 13620366 15 222 3.5 2.0 2.8 3.9 259 chr2L 13620107 intron kuz + chr2L 13620236 intron kuz + chr2L 13620366 intron kuz + chr2L_15_13620001 chr2L_13620001 RAL-737 288 chr2L 13622138 13622156 chr2L 13622234 13622249 11 97 9.0 2.5 5.8 1.6 111 chr2L 13622138 intron kuz + chr2L 13622194 intron kuz + chr2L 13622249 intron kuz + chr2L_11_13620001 chr2L_13620001 RAL-737 289 chr2L 13622164 13622170 chr2L 13622233 13622269 4 87 7.0 2.5 4.8 0.7 105 chr2L 13622164 intron kuz + chr2L 13622216 intron kuz + chr2L 13622269 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-737 290 chr2L 13625831 13625850 chr2L 13626274 13626288 6 442 4.5 3.5 4.0 1.2 457 chr2L 13625831 intron kuz + chr2L 13626060 intron kuz + chr2L 13626288 intron kuz + chr2L_6_13625001 chr2L_13625001 RAL-737 291 chr2L 13683176 13683202 chr2L 13683257 13683266 7 76 3.5 4.0 3.8 1.5 90 chr2L 13683176 exon CG31814 - chr2L 13683221 intron CG31814 - chr2L 13683266 intron CG31814 - chr2L_7_13680001 chr2L_13680001 RAL-737 292 chr2L 13692160 13692175 chr2L 13692236 13692251 7 76 7.0 8.0 7.5 0.8 91 chr2L 13692160 intron CG31814 - chr2L 13692206 intron CG31814 - chr2L 13692251 intron CG31814 - chr2L_7_13690001 chr2L_13690001 RAL-737 293 chr2L 13692178 13692190 chr2L 13692234 13692265 9 71 4.0 7.5 5.8 1.3 87 chr2L 13692178 intron CG31814 - chr2L 13692222 intron CG31814 - chr2L 13692265 intron CG31814 - chr2L_9_13690001 chr2L_13690001 RAL-737 294 chr2L 13761811 13761819 chr2L 13762908 13762930 Doc 4 1108 13.0 2.5 7.8 0.5 1119 chr2L 13761811 intron TM9SF4 + chr2L 13762370 intron TM9SF4 + chr2L 13762930 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-737 295 chr2L 13820005 13820031 chr2L 13820077 13820083 8 73 5.5 5.5 5.5 1.2 78 chr2L 13820005 intergenic Sos + chr2L 13820044 intergenic Sos + chr2L 13820083 intergenic Sos + chr2L_8_13820001 chr2L_13820001 RAL-737 296 chr2L 13842137 13842164 chr2L 13842216 13842248 16 82 7.5 3.0 5.2 2.6 111 chr2L 13842137 intron CenG1A + chr2L 13842192 intron CenG1A + chr2L 13842248 intron CenG1A + chr2L_16_13840001 chr2L_13840001 RAL-737 297 chr2L 13853112 13853116 chr2L 13862245 13862260 roo 4 9144 5.0 8.5 6.8 0.5 9148 chr2L 13853112 intron CenG1A + chr2L 13857686 intron CenG1A + chr2L 13862260 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-737 298 chr2L 13904506 13904524 chr2L 13904587 13904604 7 80 12.0 8.5 10.2 0.6 98 chr2L 13904506 intergenic Smg5 - chr2L 13904555 intergenic Smg5 - chr2L 13904604 intergenic Smg5 - chr2L_7_13900001 chr2L_13900001 RAL-737 299 chr2L 13917727 13917765 chr2L 13917828 13917866 15 100 5.5 5.5 5.5 2.3 139 chr2L 13917727 intron Ance-3 + chr2L 13917796 intron Ance-3 + chr2L 13917866 intron Ance-3 + chr2L_15_13915001 chr2L_13915001 RAL-737 300 chr2L 13981517 13981546 chr2L 13981608 13981632 10 90 3.0 3.0 3.0 2.5 115 chr2L 13981517 exon NimC2 + chr2L 13981574 intron NimC2 + chr2L 13981632 intron NimC2 + chr2L_10_13980001 chr2L_13980001 RAL-737 301 chr2L 13988283 13988304 chr2L 13988370 13988380 7 85 4.5 5.5 5.0 1.2 97 chr2L 13988283 intron rk - chr2L 13988332 intron rk - chr2L 13988380 intron rk - chr2L_7_13985001 chr2L_13985001 RAL-737 302 chr2L 14017774 14017797 chr2L 14017866 14017889 13 92 6.5 10.5 8.5 1.4 115 chr2L 14017774 intron bgm + chr2L 14017832 intron bgm + chr2L 14017889 intron bgm + chr2L_13_14015001 chr2L_14015001 RAL-737 303 chr2L 14102845 14102859 chr2L 14102926 14102940 5 81 0.0 0.0 0.0 5.0 95 chr2L 14102845 intergenic not near genes chr2L 14102892 intergenic not near genes chr2L 14102940 intergenic not near genes chr2L_5_14100001 chr2L_14100001 RAL-737 304 chr2L 14271944 14271974 chr2L 14272172 14272202 10 227 5.0 1.5 3.2 2.4 258 chr2L 14271944 intron wb + chr2L 14272073 intron wb + chr2L 14272202 intron wb + chr2L_10_14270001 chr2L_14270001 RAL-737 305 chr2L 14313181 14313214 chr2L 14313325 14313358 15 142 7.5 3.5 5.5 2.3 177 chr2L 14313181 intron wb + chr2L 14313270 intron wb + chr2L 14313358 intron wb + chr2L_15_14310001 chr2L_14310001 RAL-737 306 chr2L 14369132 14369147 chr2L 14369248 14369263 5 115 6.5 3.5 5.0 0.8 131 chr2L 14369132 intergenic not near genes chr2L 14369198 intergenic not near genes chr2L 14369263 intergenic not near genes chr2L_5_14365001 chr2L_14365001 RAL-737 307 chr2L 14369150 14369162 chr2L 14369246 14369278 8 114 3.5 3.5 3.5 1.8 128 chr2L 14369150 intergenic not near genes chr2L 14369214 intergenic not near genes chr2L 14369278 intergenic not near genes chr2L_8_14365001 chr2L_14365001 RAL-737 308 chr2L 14378043 14378061 chr2L 14378369 14378387 6 326 5.5 6.0 5.8 0.9 344 chr2L 14378043 intergenic ppk - chr2L 14378215 intergenic ppk - chr2L 14378387 3` UTR ppk - chr2L_6_14375001 chr2L_14375001 RAL-737 309 chr2L 14465586 14465618 chr2L 14469049 14469095 hopper2 5 3471 3.5 0.0 1.8 1.8 3509 chr2L 14465586 intergenic not near genes chr2L 14467340 intergenic not near genes chr2L 14469095 intergenic not near genes chr2L_5_14465001 chr2L_14465001 RAL-737 310 chr2L 14512679 14512696 chr2L 14512790 14512820 7 122 6.0 5.0 5.5 1.1 141 chr2L 14512679 intergenic not near genes chr2L 14512750 intergenic not near genes chr2L 14512820 intergenic not near genes chr2L_7_14510001 chr2L_14510001 RAL-737 311 chr2L 14564220 14564228 chr2L 14564272 14564277 8 53 2.0 4.0 3.0 2.0 57 chr2L 14564220 intergenic CG3473 - chr2L 14564248 intergenic not near genes chr2L 14564277 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-737 312 chr2L 14566834 14566866 chr2L 14566922 14566954 14 86 2.0 5.0 3.5 3.1 120 chr2L 14566834 intergenic not near genes chr2L 14566894 intergenic not near genes chr2L 14566954 intergenic not near genes chr2L_14_14565001 chr2L_14565001 RAL-737 313 chr2L 14614079 14614089 chr2L 14614362 14614382 6 290 22.0 6.5 14.2 0.4 303 chr2L 14614079 intron osp - chr2L 14614230 intron osp - chr2L 14614382 intron osp - chr2L_6_14610001 chr2L_14610001 RAL-737 314 chr2L 14614073 14614082 chr2L 14614285 14614294 4 212 21.5 15.5 18.5 0.2 221 chr2L 14614073 intron osp - chr2L 14614184 intron osp - chr2L 14614294 intron osp - chr2L_4_14610001 chr2L_14610001 RAL-737 315 chr2L 14642574 14642601 chr2L 14651737 14651764 roo 6 9159 0.5 4.0 2.2 1.9 9190 chr2L 14642574 intron osp - chr2L 14647169 intron osp - chr2L 14651764 intron osp - chr2L_6_14645001 chr2L_14645001 RAL-737 316 chr2L 14707223 14707236 chr2L 14707332 14707355 4 116 3.5 2.5 3.0 1.0 132 chr2L 14707223 intergenic not near genes chr2L 14707289 intergenic not near genes chr2L 14707355 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-737 317 chr2L 14715552 14715567 chr2L 14715629 14715655 10 86 4.5 5.5 5.0 1.7 103 chr2L 14715552 intergenic not near genes chr2L 14715604 intergenic not near genes chr2L 14715655 intergenic not near genes chr2L_10_14715001 chr2L_14715001 RAL-737 318 chr2L 14724490 14724527 chr2L 14724569 14724606 7 79 2.0 3.0 2.5 2.0 116 chr2L 14724490 intergenic CG42685 - chr2L 14724548 intergenic CG42685 - chr2L 14724606 intergenic CG42685 - chr2L_7_14720001 chr2L_14720001 RAL-737 319 chr2L 14778809 14778838 chr2L 14779097 14779102 4 282 2.0 8.0 5.0 0.7 293 chr2L 14778809 intergenic not near genes chr2L 14778956 intergenic not near genes chr2L 14779102 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-737 320 chr2L 14787138 14787147 chr2L 14787204 14787218 4 71 7.0 0.0 3.5 0.9 80 chr2L 14787138 intergenic not near genes chr2L 14787178 intergenic not near genes chr2L 14787218 intergenic not near genes chr2L_4_14785001 chr2L_14785001 RAL-737 321 chr2L 14803879 14803912 chr2L 14809082 14809115 copia 14 5200 7.0 9.5 8.2 1.5 5236 chr2L 14803879 intergenic not near genes chr2L 14806497 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-737 322 chr2L 14840981 14841010 chr2L 14841068 14841097 7 87 2.0 3.5 2.8 1.8 116 chr2L 14840981 3` UTR CR43805 - chr2L 14841039 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-737 323 chr2L 14889951 14889988 chr2L 14890376 14890413 jockey 18 419 1.0 5.5 3.2 4.3 462 chr2L 14889951 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_18_14890001 chr2L_14890001 RAL-737 324 chr2L 14984384 14984405 chr2L 14991980 14992007 opus 13 7598 5.0 6.5 5.8 1.9 7623 chr2L 14984384 intron mol - chr2L 14988196 intron mol - chr2L 14992007 intron mol - chr2L_13_14985001 chr2L_14985001 RAL-737 325 chr2L 15013170 15013178 chr2L 15013279 15013282 4 108 0.0 9.5 4.8 0.7 112 chr2L 15013170 intergenic not near genes chr2L 15013226 intergenic not near genes chr2L 15013282 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-737 326 chr2L 15044707 15044740 chr2L 15044783 15044816 22 72 2.5 1.5 2.0 7.3 109 chr2L 15044707 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044816 intergenic ck - chr2L_22_15040001 chr2L_15040001 RAL-737 327 chr2L 15077910 15078101 chr2L 15077998 15078184 16 83 1.5 10.0 5.8 2.4 274 chr2L 15077910 intron CG15270 + chr2L 15078047 intron CG15270 + chr2L 15078184 intron CG15270 + chr2L_16_15075001 chr2L_15075001 RAL-737 328 chr2L 15080907 15080918 chr2L 15081000 15081000 6 91 2.5 0.0 1.2 2.7 93 chr2L 15080907 intron CG15270 + chr2L 15080954 intron CG15270 + chr2L 15081000 intron CG15270 + chr2L_6_15080001 chr2L_15080001 RAL-737 329 chr2L 15087754 15087771 chr2L 15087864 15087879 6 110 5.5 4.0 4.8 1.0 125 chr2L 15087754 exon CG15270 + chr2L 15087816 intron CG15270 + chr2L 15087879 intron CG15270 + chr2L_6_15085001 chr2L_15085001 RAL-737 330 chr2L 15122778 15122807 chr2L 15122858 15122887 11 80 2.5 3.0 2.8 2.9 109 chr2L 15122778 intergenic not near genes chr2L 15122832 intergenic not near genes chr2L 15122887 intergenic not near genes chr2L_11_15120001 chr2L_15120001 RAL-737 331 chr2L 15153658 15153688 chr2L 15153734 15153738 8 73 7.0 4.5 5.8 1.2 80 chr2L 15153658 intergenic not near genes chr2L 15153698 intergenic not near genes chr2L 15153738 intergenic not near genes chr2L_8_15150001 chr2L_15150001 RAL-737 332 chr2L 15219678 15219682 chr2L 15219755 15219758 5 77 12.5 10.5 11.5 0.4 80 chr2L 15219678 intergenic not near genes chr2L 15219718 intergenic not near genes chr2L 15219758 intergenic not near genes chr2L_5_15215001 chr2L_15215001 RAL-737 333 chr2L 15375816 15375846 chr2L 15375928 15375958 12 110 0.5 2.0 1.2 5.5 142 chr2L 15375816 intergenic not near genes chr2L 15375887 intergenic not near genes chr2L 15375958 intergenic not near genes chr2L_12_15375001 chr2L_15375001 RAL-737 334 chr2L 15446053 15446073 chr2L 15453522 15453542 blood 13 7467 7.5 5.0 6.2 1.8 7489 chr2L 15446053 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453542 intergenic not near genes chr2L_13_15445001 chr2L_15445001 RAL-737 335 chr2L 15446075 15446084 chr2L 15453521 15453553 blood 5 7461 3.0 5.0 4.0 1.0 7478 chr2L 15446075 intergenic not near genes chr2L 15449814 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-737 336 chr2L 15460327 15460350 chr2L 15460468 15460502 10 143 3.5 4.5 4.0 2.0 175 chr2L 15460327 intergenic not near genes chr2L 15460414 intergenic not near genes chr2L 15460502 intergenic not near genes chr2L_10_15460001 chr2L_15460001 RAL-737 337 chr2L 15514317 15514328 chr2L 15514401 15514412 5 84 9.0 13.5 11.2 0.4 95 chr2L 15514317 intergenic not near genes chr2L 15514364 intergenic not near genes chr2L 15514412 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-737 338 chr2L 15535884 15535918 chr2L 15535974 15536004 8 87 5.5 6.5 6.0 1.1 120 chr2L 15535884 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536004 intergenic not near genes chr2L_8_15535001 chr2L_15535001 RAL-737 339 chr2L 15551980 15551994 chr2L 15552038 15552072 9 74 1.0 6.0 3.5 2.0 92 chr2L 15551980 3` UTR CG15256 + chr2L 15552026 3` UTR CG15256 + chr2L 15552072 intergenic CG15256 + chr2L_9_15550001 chr2L_15550001 RAL-737 340 chr2L 15586408 15586435 chr2L 15593460 15593487 297 15 7049 5.5 4.0 4.8 2.6 7079 chr2L 15586408 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593487 intergenic not near genes chr2L_15_15585001 chr2L_15585001 RAL-737 341 chr2L 15598787 15598799 chr2L 15598847 15598878 4 74 4.0 0.0 2.0 1.3 91 chr2L 15598787 intergenic not near genes chr2L 15598832 intergenic not near genes chr2L 15598878 intergenic not near genes chr2L_4_15595001 chr2L_15595001 RAL-737 342 chr2L 15636676 15636692 chr2L 15636752 15636768 6 76 4.0 0.0 2.0 2.0 92 chr2L 15636676 intergenic not near genes chr2L 15636722 intergenic not near genes chr2L 15636768 intergenic not near genes chr2L_6_15635001 chr2L_15635001 RAL-737 343 chr2L 15749246 15749265 chr2L 15749352 15749371 6 106 3.5 2.5 3.0 1.5 125 chr2L 15749246 intergenic l(2)35Di - chr2L 15749308 intergenic l(2)35Di - chr2L 15749371 3` UTR l(2)35Di - chr2L_6_15745001 chr2L_15745001 RAL-737 344 chr2L 15935205 15935222 chr2L 15935295 15935312 4 88 3.5 5.5 4.5 0.7 107 chr2L 15935205 intron beat-Ib - chr2L 15935258 intron beat-Ib - chr2L 15935312 intron beat-Ib - chr2L_4_15935001 chr2L_15935001 RAL-737 345 chr2L 15950382 15950407 chr2L 15950460 15950485 5 78 1.5 1.0 1.2 2.3 103 chr2L 15950382 intron beat-Ib - chr2L 15950434 intron beat-Ib - chr2L 15950485 intron beat-Ib - chr2L_5_15950001 chr2L_15950001 RAL-737 346 chr2L 15956021 15956059 chr2L 15957488 15957526 hobo 14 1467 5.0 4.0 4.5 2.5 1505 chr2L 15956021 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957526 intron beat-Ib - chr2L_14_15955001 chr2L_15955001 RAL-737 347 chr2L 16017649 16017675 chr2L 16017725 16017737 6 67 9.0 4.0 6.5 0.8 88 chr2L 16017649 intron beat-Ic + chr2L 16017693 intron beat-Ic + chr2L 16017737 intron beat-Ic + chr2L_6_16015001 chr2L_16015001 RAL-737 348 chr2L 16027395 16027428 chr2L 16027471 16027504 8 76 1.0 3.5 2.2 2.5 109 chr2L 16027395 intron beat-Ic + chr2L 16027450 intron beat-Ic + chr2L 16027504 intron beat-Ic + chr2L_8_16025001 chr2L_16025001 RAL-737 349 chr2L 16141148 16141196 chr2L 16146369 16146403 copia 11 5208 0.0 3.0 1.5 4.4 5255 chr2L 16141148 intergenic not near genes chr2L 16143776 intergenic not near genes chr2L 16146403 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-737 350 chr2L 9084336 9084340 chr2L 16217660 16217660 10 7133321 18.0 37.0 27.5 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-737 351 chr2L 16254893 16254916 chr2L 16255152 16255175 8 258 9.0 4.0 6.5 1.1 282 chr2L 16254893 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255175 intron PRL-1 - chr2L_8_16255001 chr2L_16255001 RAL-737 352 chr2L 16280259 16280287 chr2L 16281424 16281458 1360 6 1163 1.0 5.0 3.0 1.5 1199 chr2L 16280259 intron crp - chr2L 16280858 intron crp - chr2L 16281458 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-737 353 chr2L 16374322 16374360 chr2L 16374403 16374441 13 80 1.5 6.0 3.8 2.7 119 chr2L 16374322 intergenic not near genes chr2L 16374382 intergenic not near genes chr2L 16374441 intergenic not near genes chr2L_13_16370001 chr2L_16370001 RAL-737 354 chr2L 16375526 16375559 chr2L 16375622 16375656 19 98 1.5 2.0 1.8 6.8 130 chr2L 16375526 intergenic not near genes chr2L 16375591 intergenic not near genes chr2L 16375656 intergenic not near genes chr2L_19_16375001 chr2L_16375001 RAL-737 355 chr2L 16384491 16384521 chr2L 16384580 16384610 13 88 7.0 6.5 6.8 1.7 119 chr2L 16384491 intergenic not near genes chr2L 16384550 intergenic not near genes chr2L 16384610 intergenic not near genes chr2L_13_16380001 chr2L_16380001 RAL-737 356 chr2L 16408153 16408154 chr2L 16408238 16408256 4 96 0.0 2.5 1.2 1.8 103 chr2L 16408153 intron CG5888 - chr2L 16408204 intron CG5888 - chr2L 16408256 intron CG5888 - chr2L_4_16405001 chr2L_16405001 RAL-737 357 chr2L 16511986 16511991 chr2L 16519113 16519118 HMS-Beagle 4 7127 2.5 3.0 2.8 1.1 7132 chr2L 16511986 intron CG5953 - chr2L 16515552 intron CG5953 - chr2L 16519118 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-737 358 chr2L 16583092 16583127 chr2L 16583180 16583187 12 84 4.0 4.0 4.0 2.4 95 chr2L 16583092 intron CG42389 + chr2L 16583140 intron CG42389 + chr2L 16583187 intron CG42389 + chr2L_12_16580001 chr2L_16580001 RAL-737 359 chr2L 16583562 16583582 chr2L 16583685 16583716 11 132 4.0 3.0 3.5 2.4 154 chr2L 16583562 intron CG42389 + chr2L 16583639 intron CG42389 + chr2L 16583716 intron CG42389 + chr2L_11_16580001 chr2L_16580001 RAL-737 360 chr2L 16594023 16594145 chr2L 16594100 16594235 7 81 0.5 0.5 0.5 4.7 212 chr2L 16594023 intron CG42389 + chr2L 16594129 intron CG42389 + chr2L 16594235 intron CG42389 + chr2L_7_16590001 chr2L_16590001 RAL-737 361 chr2L 16633183 16633218 chr2L 16633261 16633296 14 77 2.5 0.5 1.5 5.6 113 chr2L 16633183 intron CG42389 + chr2L 16633240 intron CG42389 + chr2L 16633296 intron CG42389 + chr2L_14_16630001 chr2L_16630001 RAL-737 362 chr2L 16654701 16654734 chr2L 16654794 16654805 15 91 4.5 1.5 3.0 3.8 104 chr2L 16654701 intron CG42389 + chr2L 16654753 intron CG42389 + chr2L 16654805 intron CG42389 + chr2L_15_16650001 chr2L_16650001 RAL-737 363 chr2L 16695260 16695293 chr2L 16695344 16695377 12 83 2.5 3.5 3.0 3.0 117 chr2L 16695260 intron grp + chr2L 16695318 intron grp + chr2L 16695377 intron grp + chr2L_12_16695001 chr2L_16695001 RAL-737 364 chr2L 16721599 16721612 chr2L 16721675 16721683 5 75 3.0 2.5 2.8 1.3 84 chr2L 16721599 intron Cyt-c-p + chr2L 16721641 intron Cyt-c-p + chr2L 16721683 intron Cyt-c-p + chr2L_5_16720001 chr2L_16720001 RAL-737 365 chr2L 16745643 16745659 chr2L 16745717 16745735 8 76 4.0 5.5 4.8 1.4 92 chr2L 16745643 intron CG17912 + chr2L 16745689 intron CG17912 + chr2L 16745735 intron CG17912 + chr2L_8_16745001 chr2L_16745001 RAL-737 366 chr2L 16796097 16796104 chr2L 16796198 16796205 4 101 3.0 8.0 5.5 0.6 108 chr2L 16796097 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796151 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796205 intergenic Ugt36Ba +,Ugt36Bb + chr2L_4_16795001 chr2L_16795001 RAL-737 367 chr2L 16867035 16867040 chr2L 16867130 16867135 4 95 0.0 5.0 2.5 1.1 100 chr2L 16867035 intergenic not near genes chr2L 16867085 intergenic not near genes chr2L 16867135 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-737 368 chr2L 16958104 16958137 chr2L 16962892 16962913 Doc 12 4782 4.0 5.0 4.5 2.2 4809 chr2L 16958104 intergenic not near genes chr2L 16960508 intergenic not near genes chr2L 16962913 intergenic not near genes chr2L_12_16960001 chr2L_16960001 RAL-737 369 chr2L 17005416 17005429 chr2L 17005513 17005521 4 95 7.5 7.5 7.5 0.5 105 chr2L 17005416 intergenic not near genes chr2L 17005468 intergenic not near genes chr2L 17005521 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-737 370 chr2L 17032501 17032523 chr2L 17032586 17032603 7 83 6.0 6.0 6.0 1.0 102 chr2L 17032501 intergenic not near genes chr2L 17032552 intergenic not near genes chr2L 17032603 intergenic not near genes chr2L_7_17030001 chr2L_17030001 RAL-737 371 chr2L 17033916 17033951 chr2L 17034001 17034036 13 81 2.5 2.5 2.5 3.7 120 chr2L 17033916 intergenic not near genes chr2L 17033976 intergenic not near genes chr2L 17034036 intergenic not near genes chr2L_13_17030001 chr2L_17030001 RAL-737 372 chr2L 17062758 17062790 chr2L 17062840 17062872 4 75 1.5 4.0 2.8 1.1 114 chr2L 17062758 intergenic not near genes chr2L 17062815 intergenic not near genes chr2L 17062872 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-737 373 chr2L 17120868 17120875 chr2L 17120947 17120954 4 79 0.0 7.5 3.8 0.8 86 chr2L 17120868 intergenic not near genes chr2L 17120911 intergenic not near genes chr2L 17120954 intergenic not near genes chr2L_4_17120001 chr2L_17120001 RAL-737 374 chr2L 17129479 17129505 chr2L 17129567 17129593 13 87 2.5 4.5 3.5 2.9 114 chr2L 17129479 intergenic not near genes chr2L 17129536 intergenic not near genes chr2L 17129593 intergenic not near genes chr2L_13_17125001 chr2L_17125001 RAL-737 375 chr2L 17141038 17141065 chr2L 17141325 17141330 7 282 5.0 2.0 3.5 1.6 292 chr2L 17141038 intron,intron CG34106 +,beat-IIIa + chr2L 17141184 intron,intron CG34106 +,beat-IIIa + chr2L 17141330 intron,intron CG34106 +,beat-IIIa + chr2L_7_17140001 chr2L_17140001 RAL-737 376 chr2L 17158727 17158762 chr2L 17158829 17158839 10 99 1.5 1.5 1.5 4.0 112 chr2L 17158727 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158783 intron,intron CG34106 +,beat-IIIa + chr2L 17158839 intron,intron CG34106 +,beat-IIIa + chr2L_10_17155001 chr2L_17155001 RAL-737 377 chr2L 17167566 17167596 chr2L 17167806 17167837 pogo 9 240 2.5 4.0 3.2 2.1 271 chr2L 17167566 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_9_17165001 chr2L_17165001 RAL-737 378 chr2L 17178908 17178923 chr2L 17179052 17179061 4 143 3.0 6.0 4.5 0.7 153 chr2L 17178908 exon Gr36b + chr2L 17178984 exon Gr36b + chr2L 17179061 intron Gr36b + chr2L_4_17175001 chr2L_17175001 RAL-737 379 chr2L 17199173 17199191 chr2L 17200640 17200658 hobo 10 1467 7.5 6.0 6.8 1.3 1485 chr2L 17199173 intron beat-IIIc - chr2L 17199916 intron beat-IIIc - chr2L 17200658 intron beat-IIIc - chr2L_10_17195001 chr2L_17195001 RAL-737 380 chr2L 17239041 17239071 chr2L 17239125 17239155 12 82 4.5 2.0 3.2 2.9 114 chr2L 17239041 intron beat-IIIc - chr2L 17239098 intron beat-IIIc - chr2L 17239155 intron beat-IIIc - chr2L_12_17235001 chr2L_17235001 RAL-737 381 chr2L 17242623 17242631 chr2L 17242696 17242713 5 80 8.0 6.0 7.0 0.6 90 chr2L 17242623 intron beat-IIIc - chr2L 17242668 intron beat-IIIc - chr2L 17242713 intron beat-IIIc - chr2L_5_17240001 chr2L_17240001 RAL-737 382 chr2L 17242632 17242648 chr2L 17242695 17242726 11 73 4.5 6.0 5.2 1.8 94 chr2L 17242632 intron beat-IIIc - chr2L 17242679 intron beat-IIIc - chr2L 17242726 intron beat-IIIc - chr2L_11_17240001 chr2L_17240001 RAL-737 383 chr2L 17303437 17303469 chr2L 17303615 17303646 12 167 3.0 5.5 4.2 2.3 209 chr2L 17303437 intergenic not near genes chr2L 17303542 intergenic not near genes chr2L 17303646 intergenic not near genes chr2L_12_17300001 chr2L_17300001 RAL-737 384 chr2L 17335548 17335578 chr2L 17336714 17336739 1360 14 1163 4.5 6.0 5.2 2.3 1191 chr2L 17335548 intergenic not near genes chr2L 17336144 intergenic not near genes chr2L 17336739 intergenic not near genes chr2L_14_17335001 chr2L_17335001 RAL-737 385 chr2L 17369593 17369613 chr2L 17369670 17369685 8 76 7.5 2.0 4.8 1.4 92 chr2L 17369593 intron Lrch - chr2L 17369639 intron Lrch - chr2L 17369685 intron Lrch - chr2L_8_17365001 chr2L_17365001 RAL-737 386 chr2L 17424711 17424740 chr2L 17424823 17424852 12 111 3.5 2.5 3.0 3.0 141 chr2L 17424711 intron Dif - chr2L 17424782 intron Dif - chr2L 17424852 intron Dif - chr2L_12_17420001 chr2L_17420001 RAL-737 387 chr2L 17572123 17572145 chr2L 17572232 17572254 6 109 6.0 2.5 4.2 1.2 131 chr2L 17572123 intergenic not near genes chr2L 17572188 intergenic not near genes chr2L 17572254 intergenic not near genes chr2L_6_17570001 chr2L_17570001 RAL-737 388 chr2L 17573253 17573276 chr2L 17573346 17573369 8 92 4.0 4.0 4.0 1.6 116 chr2L 17573253 intergenic not near genes chr2L 17573311 intergenic not near genes chr2L 17573369 intergenic not near genes chr2L_8_17570001 chr2L_17570001 RAL-737 389 chr2L 17623670 17623699 chr2L 17623900 17623929 14 228 4.5 4.0 4.2 2.7 259 chr2L 17623670 intergenic not near genes chr2L 17623800 intergenic not near genes chr2L 17623929 intergenic not near genes chr2L_14_17620001 chr2L_17620001 RAL-737 390 chr2L 17637170 17637201 chr2L 17637255 17637286 16 85 4.0 1.5 2.8 4.2 116 chr2L 17637170 intergenic not near genes chr2L 17637228 intergenic not near genes chr2L 17637286 intergenic not near genes chr2L_16_17635001 chr2L_17635001 RAL-737 391 chr2L 17687516 17687521 chr2L 17692261 17692266 F-element 5 4745 5.5 6.0 5.8 0.7 4750 chr2L 17687516 intron CadN - chr2L 17689891 intron CadN - chr2L 17692266 intron CadN - chr2L_5_17685001 chr2L_17685001 RAL-737 392 chr2L 17769433 17769444 chr2L 17769531 17769531 5 95 7.5 3.0 5.2 0.8 98 chr2L 17769433 intron CadN - chr2L 17769482 intron CadN - chr2L 17769531 intron CadN - chr2L_5_17765001 chr2L_17765001 RAL-737 393 chr2L 17784653 17784677 chr2L 17784751 17784775 10 97 5.5 6.5 6.0 1.4 122 chr2L 17784653 intergenic not near genes chr2L 17784714 intergenic not near genes chr2L 17784775 intergenic not near genes chr2L_10_17780001 chr2L_17780001 RAL-737 394 chr2L 17796026 17796045 chr2L 17796106 17796115 6 79 3.0 4.0 3.5 1.3 89 chr2L 17796026 intron CadN2 - chr2L 17796070 intron CadN2 - chr2L 17796115 intron CadN2 - chr2L_6_17795001 chr2L_17795001 RAL-737 395 chr2L 17819938 17819951 chr2L 17825126 17825154 copia 6 5197 2.5 2.5 2.5 1.7 5216 chr2L 17819938 intron CadN2 - chr2L 17822546 intron CadN2 - chr2L 17825154 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-737 396 chr2L 17859695 17859717 chr2L 17859813 17859818 8 124 4.0 2.5 3.2 1.9 123 chr2L 17859695 intron CadN2 - chr2L 17859756 intron CadN2 - chr2L 17859818 intron CadN2 - chr2L_8_17855001 chr2L_17855001 RAL-737 397 chr2L 17880593 17880617 chr2L 17880705 17880729 9 112 2.5 3.0 2.8 2.4 136 chr2L 17880593 intergenic not near genes chr2L 17880661 intergenic not near genes chr2L 17880729 intergenic not near genes chr2L_9_17880001 chr2L_17880001 RAL-737 398 chr2L 17938689 17938720 chr2L 17938775 17938806 14 83 5.5 0.5 3.0 3.5 117 chr2L 17938689 intergenic CR44399 - chr2L 17938748 intergenic CR44399 - chr2L 17938806 intergenic CR44399 - chr2L_14_17935001 chr2L_17935001 RAL-737 399 chr2L 17941863 17941872 chr2L 17941940 17941954 5 81 4.5 8.5 6.5 0.7 91 chr2L 17941863 intergenic not near genes chr2L 17941908 intergenic not near genes chr2L 17941954 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-737 400 chr2L 17951949 17951980 chr2L 17953416 17953447 hobo 16 1466 5.0 5.0 5.0 2.7 1498 chr2L 17951949 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953447 intergenic not near genes chr2L_16_17950001 chr2L_17950001 RAL-737 401 chr2L 18051898 18051909 chr2L 18061022 18061054 roo 4 9130 3.0 3.0 3.0 1.0 9156 chr2L 18051898 intron rdo + chr2L 18056476 intron rdo + chr2L 18061054 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-737 402 chr2L 18090674 18090702 chr2L 18090762 18090790 12 83 7.0 5.0 6.0 1.7 116 chr2L 18090674 intergenic CG15153 - chr2L 18090732 intergenic CG15153 - chr2L 18090790 3` UTR CG15153 - chr2L_12_18090001 chr2L_18090001 RAL-737 403 chr2L 18130473 18130495 chr2L 18130557 18130586 9 87 4.5 0.5 2.5 2.6 113 chr2L 18130473 3` UTR kel - chr2L 18130530 3` UTR kel - chr2L 18130586 3` UTR kel - chr2L_9_18130001 chr2L_18130001 RAL-737 404 chr2L 18185004 18185025 chr2L 18185122 18185143 7 118 4.0 2.5 3.2 1.7 139 chr2L 18185004 intron,5` UTR CG42750 -,CG7180 - chr2L 18185074 intron CG42750 - chr2L 18185143 intron CG42750 - chr2L_7_18185001 chr2L_18185001 RAL-737 405 chr2L 18218615 18218621 chr2L 18218703 18218709 4 88 6.0 6.5 6.2 0.6 94 chr2L 18218615 intron CG42750 - chr2L 18218662 intron CG42750 - chr2L 18218709 intron CG42750 - chr2L_4_18215001 chr2L_18215001 RAL-737 406 chr2L 18218622 18218631 chr2L 18218701 18218719 7 86 5.0 6.0 5.5 1.1 97 chr2L 18218622 intron CG42750 - chr2L 18218670 intron CG42750 - chr2L 18218719 intron CG42750 - chr2L_7_18215001 chr2L_18215001 RAL-737 407 chr2L 18221643 18221657 chr2L 18221715 18221735 8 77 0.0 6.5 3.2 1.9 92 chr2L 18221643 intron CG42750 - chr2L 18221689 intron CG42750 - chr2L 18221735 intron CG42750 - chr2L_8_18220001 chr2L_18220001 RAL-737 408 chr2L 18239957 18239990 chr2L 18240040 18240051 9 76 4.5 0.0 2.2 2.8 94 chr2L 18239957 intron CG42750 - chr2L 18240004 intron CG42750 - chr2L 18240051 intron CG42750 - chr2L_9_18240001 chr2L_18240001 RAL-737 409 chr2L 18243372 18243397 chr2L 18243449 18243474 15 74 3.0 4.5 3.8 3.1 102 chr2L 18243372 intron CG42750 - chr2L 18243423 intron CG42750 - chr2L 18243474 intron CG42750 - chr2L_15_18240001 chr2L_18240001 RAL-737 410 chr2L 18393988 18394000 chr2L 18394068 18394080 8 80 7.5 6.5 7.0 1.0 92 chr2L 18393988 intergenic not near genes chr2L 18394034 intergenic not near genes chr2L 18394080 intergenic not near genes chr2L_8_18390001 chr2L_18390001 RAL-737 411 chr2L 18394002 18394010 chr2L 18394064 18394090 6 77 5.0 5.5 5.2 1.0 88 chr2L 18394002 intergenic not near genes chr2L 18394046 intergenic not near genes chr2L 18394090 intergenic not near genes chr2L_6_18390001 chr2L_18390001 RAL-737 412 chr2L 18398419 18398431 chr2L 18398497 18398509 7 78 3.0 6.5 4.8 1.2 90 chr2L 18398419 intergenic not near genes chr2L 18398464 intergenic not near genes chr2L 18398509 intergenic not near genes chr2L_7_18395001 chr2L_18395001 RAL-737 413 chr2L 18408022 18408055 chr2L 18412806 18412830 Doc 25 4781 9.5 0.5 5.0 4.2 4808 chr2L 18408022 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412830 intergenic not near genes chr2L_25_18410001 chr2L_18410001 RAL-737 414 chr2L 18812556 18812581 chr2L 18812819 18812844 8 259 9.5 4.5 7.0 1.0 288 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812700 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812844 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-737 415 chr2L 18826641 18826661 chr2L 18826781 18826796 4 138 18.0 16.0 17.0 0.2 155 chr2L 18826641 3` UTR CG17323 + chr2L 18826718 intergenic CG17323 +,CG17322 + chr2L 18826796 5` UTR CG17322 + chr2L_4_18825001 chr2L_18825001 RAL-737 416 chr2L 18883854 18883889 chr2L 18883936 18883970 9 79 5.5 9.0 7.2 1.1 116 chr2L 18883854 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_9_18880001 chr2L_18880001 RAL-737 417 chr2L 18902635 18902654 chr2L 18902910 18902935 11 279 2.5 4.5 3.5 2.4 300 chr2L 18902635 intergenic not near genes chr2L 18902785 intergenic not near genes chr2L 18902935 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-737 418 chr2L 18926580 18926590 chr2L 18926687 18926697 4 107 1.5 7.0 4.2 0.8 117 chr2L 18926580 intron ssp3 - chr2L 18926638 intron ssp3 - chr2L 18926697 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-737 419 chr2L 18981394 18981413 chr2L 18981477 18981483 6 78 5.0 8.5 6.8 0.8 89 chr2L 18981394 intron Swip-1 - chr2L 18981438 intron Swip-1 - chr2L 18981483 intron Swip-1 - chr2L_6_18980001 chr2L_18980001 RAL-737 420 chr2L 19016243 19016274 chr2L 19016339 19016370 12 96 2.0 3.5 2.8 3.2 127 chr2L 19016243 intergenic not near genes chr2L 19016306 intergenic not near genes chr2L 19016370 intergenic not near genes chr2L_12_19015001 chr2L_19015001 RAL-737 421 chr2L 19035927 19035949 chr2L 19036007 19036020 10 84 4.5 4.0 4.2 1.9 93 chr2L 19035927 intron mib2 + chr2L 19035974 intron mib2 + chr2L 19036020 intron mib2 + chr2L_10_19035001 chr2L_19035001 RAL-737 422 chr2L 19147370 19147400 chr2L 19154405 19154435 297 8 7032 6.0 3.5 4.8 1.4 7065 chr2L 19147370 intron brat + chr2L 19150902 intron brat + chr2L 19154435 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-737 423 chr2L 19159043 19159058 chr2L 19159162 19159172 5 118 7.0 4.5 5.8 0.7 129 chr2L 19159043 intron,3` UTR brat +,CR44977 - chr2L 19159108 intron,3` UTR brat +,CR44977 - chr2L 19159172 intron,3` UTR brat +,CR44977 - chr2L_5_19155001 chr2L_19155001 RAL-737 424 chr2L 19278910 19278936 chr2L 19278995 19279022 4 84 7.5 4.5 6.0 0.6 112 chr2L 19278910 intergenic not near genes chr2L 19278966 intergenic not near genes chr2L 19279022 intergenic not near genes chr2L_4_19275001 chr2L_19275001 RAL-737 425 chr2L 19305610 19305632 chr2L 19305715 19305732 13 105 4.5 3.5 4.0 2.6 122 chr2L 19305610 intergenic not near genes chr2L 19305671 intergenic not near genes chr2L 19305732 intergenic not near genes chr2L_13_19305001 chr2L_19305001 RAL-737 426 chr2L 19309641 19309651 chr2L 19309698 19309727 5 68 3.0 4.0 3.5 1.1 86 chr2L 19309641 intergenic not near genes chr2L 19309684 intergenic not near genes chr2L 19309727 intergenic not near genes chr2L_5_19305001 chr2L_19305001 RAL-737 427 chr2L 19345013 19345031 chr2L 19357222 19357240 blood 6 12209 9.5 4.5 7.0 0.8 12227 chr2L 19345013 intron dnt - chr2L 19351126 intron dnt - chr2L 19357240 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-737 428 chr2L 19357549 19357569 chr2L 19357639 19357659 7 90 3.0 9.0 6.0 1.0 110 chr2L 19357549 intron dnt - chr2L 19357604 intron dnt - chr2L 19357659 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-737 429 chr2L 19375487 19375491 chr2L 19375552 19375572 4 77 5.0 6.0 5.5 0.6 85 chr2L 19375487 intergenic not near genes chr2L 19375530 intergenic not near genes chr2L 19375572 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-737 430 chr2L 19405619 19405637 chr2L 19405709 19405727 8 90 5.0 2.0 3.5 1.8 108 chr2L 19405619 intron Pax - chr2L 19405673 intron Pax - chr2L 19405727 intron Pax - chr2L_8_19405001 chr2L_19405001 RAL-737 431 chr2L 19544604 19544629 chr2L 19544667 19544667 4 62 4.5 6.5 5.5 0.6 63 chr2L 19544604 exon ref(2)P + chr2L 19544636 exon ref(2)P + chr2L 19544667 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-737 432 chr2L 19558516 19558548 chr2L 19558620 19558632 6 99 2.0 4.5 3.2 1.4 116 chr2L 19558516 intron Tep5 + chr2L 19558574 intron Tep5 + chr2L 19558632 intron Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-737 433 chr2L 19560005 19560037 chr2L 19560258 19560289 8 247 2.0 6.0 4.0 1.6 284 chr2L 19560005 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-737 434 chr2L 19560833 19560865 chr2L 19560913 19560945 13 77 6.5 0.5 3.5 2.9 112 chr2L 19560833 intron Tep5 + chr2L 19560889 exon Tep5 + chr2L 19560945 exon Tep5 + chr2L_13_19560001 chr2L_19560001 RAL-737 435 chr2L 19561346 19561365 chr2L 19561487 19561506 7 140 1.5 8.5 5.0 1.2 160 chr2L 19561346 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561506 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-737 436 chr2L 19562529 19562558 chr2L 19562608 19562638 10 75 5.0 3.0 4.0 2.0 109 chr2L 19562529 exon Tep5 + chr2L 19562584 intron Tep5 + chr2L 19562638 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-737 437 chr2L 19601569 19601595 chr2L 19601646 19601672 10 76 1.5 9.5 5.5 1.5 103 chr2L 19601569 intron,intron Lar +,CR44978 - chr2L 19601620 intron,intron Lar +,CR44978 - chr2L 19601672 intron,intron Lar +,CR44978 - chr2L_10_19600001 chr2L_19600001 RAL-737 438 chr2L 19620092 19620132 chr2L 19621081 19621090 jockey 14 977 2.0 5.5 3.8 2.9 998 chr2L 19620092 intron Lar + chr2L 19620591 intron Lar + chr2L 19621090 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-737 439 chr2L 19652568 19652603 chr2L 19674004 19674039 opus 16 21436 3.5 5.5 4.5 2.9 21471 chr2L 19652568 intron Lar + chr2L 19663304 intron Lar + chr2L 19674039 intron Lar + chr2L_16_19660001 chr2L_19660001 RAL-737 440 chr2L 19703535 19703570 chr2L 19712671 19712706 roo 14 9133 8.5 5.0 6.8 1.8 9171 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712706 intron Lar + chr2L_14_19705001 chr2L_19705001 RAL-737 441 chr2L 19762816 19762822 chr2L 19763058 19763064 pogo 4 242 7.5 5.0 6.2 0.6 248 chr2L 19762816 intron fbp - chr2L 19762940 intron fbp - chr2L 19763064 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-737 442 chr2L 19762829 19762840 chr2L 19763050 19763082 pogo 4 236 6.0 4.0 5.0 0.7 253 chr2L 19762829 intron fbp - chr2L 19762956 intron fbp - chr2L 19763082 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-737 443 chr2L 19773164 19773193 chr2L 19773251 19773280 14 84 8.5 1.0 4.8 2.4 116 chr2L 19773164 intergenic not near genes chr2L 19773222 intergenic not near genes chr2L 19773280 intergenic not near genes chr2L_14_19770001 chr2L_19770001 RAL-737 444 chr2L 19823267 19823295 chr2L 19823348 19823384 5 86 6.0 0.0 3.0 1.2 117 chr2L 19823267 intron sick + chr2L 19823326 intron sick + chr2L 19823384 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-737 445 chr2L 19824415 19824436 chr2L 19824498 19824519 8 82 2.0 5.0 3.5 1.8 104 chr2L 19824415 intron sick + chr2L 19824467 intron sick + chr2L 19824519 intron sick + chr2L_8_19820001 chr2L_19820001 RAL-737 446 chr2L 19901487 19901520 chr2L 19901589 19901623 10 102 5.0 1.5 3.2 2.4 136 chr2L 19901487 intron sick + chr2L 19901555 intron sick + chr2L 19901623 intron sick + chr2L_10_19900001 chr2L_19900001 RAL-737 447 chr2L 19911291 19911323 chr2L 19911379 19911411 10 85 3.5 4.0 3.8 2.1 120 chr2L 19911291 intron,3` UTR sick +,CR43097 - chr2L 19911351 intron,3` UTR sick +,CR43097 - chr2L 19911411 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-737 448 chr2L 20005881 20005897 chr2L 20010951 20010973 flea 9 5073 6.5 7.0 6.8 1.2 5092 chr2L 20005881 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20010973 intron CG43861 - chr2L_9_20005001 chr2L_20005001 RAL-737 449 chr2L 20011729 20011758 chr2L 20011812 20011841 8 83 0.0 3.0 1.5 3.2 112 chr2L 20011729 intron CG43861 - chr2L 20011785 intron CG43861 - chr2L 20011841 intron CG43861 - chr2L_8_20010001 chr2L_20010001 RAL-737 450 chr2L 20022091 20022097 chr2L 20022204 20022210 5 113 8.0 5.0 6.5 0.7 119 chr2L 20022091 intergenic not near genes chr2L 20022150 intergenic not near genes chr2L 20022210 intergenic not near genes chr2L_5_20020001 chr2L_20020001 RAL-737 451 chr2L 20022099 20022122 chr2L 20022202 20022234 7 107 1.0 4.0 2.5 2.0 135 chr2L 20022099 intergenic not near genes chr2L 20022166 intergenic not near genes chr2L 20022234 intergenic not near genes chr2L_7_20020001 chr2L_20020001 RAL-737 452 chr2L 20122637 20122646 chr2L 20122727 20122736 4 90 3.5 2.0 2.8 1.1 99 chr2L 20122637 intergenic not near genes chr2L 20122686 intergenic not near genes chr2L 20122736 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-737 453 chr2L 20236511 20236541 chr2L 20236587 20236617 9 76 6.5 5.0 5.8 1.3 106 chr2L 20236511 intergenic not near genes chr2L 20236564 intergenic not near genes chr2L 20236617 intergenic not near genes chr2L_9_20235001 chr2L_20235001 RAL-737 454 chr2L 20272112 20272140 chr2L 20282823 20282851 copia 12 10710 3.5 8.0 5.8 1.8 10739 chr2L 20272112 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282851 intergenic not near genes chr2L_12_20275001 chr2L_20275001 RAL-737 455 chr2L 20296506 20296540 chr2L 20296587 20296587 11 74 3.5 3.0 3.2 2.6 81 chr2L 20296506 intergenic CR43414 - chr2L 20296546 intergenic CR43414 - chr2L 20296587 intergenic CR43414 - chr2L_11_20295001 chr2L_20295001 RAL-737 456 chr2L 20299414 20299445 chr2L 20299535 20299568 14 116 2.0 5.5 3.8 2.9 154 chr2L 20299414 intergenic not near genes chr2L 20299491 intergenic not near genes chr2L 20299568 intergenic not near genes chr2L_14_20295001 chr2L_20295001 RAL-737 457 chr2L 20303160 20303192 chr2L 20310628 20310660 blood 17 7467 0.0 3.0 1.5 6.8 7500 chr2L 20303160 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310660 intergenic not near genes chr2L_17_20305001 chr2L_20305001 RAL-737 458 chr2L 20310882 20310918 chr2L 20310962 20310997 7 79 1.5 6.5 4.0 1.4 115 chr2L 20310882 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310997 intergenic spir + chr2L_7_20310001 chr2L_20310001 RAL-737 459 chr2L 20370868 20370901 chr2L 20371068 20371072 13 194 4.0 5.0 4.5 2.4 204 chr2L 20370868 intergenic not near genes chr2L 20370970 intergenic not near genes chr2L 20371072 intergenic not near genes chr2L_13_20370001 chr2L_20370001 RAL-737 460 chr2L 20372220 20372254 chr2L 20372470 20372495 pogo 4 248 0.5 5.0 2.8 1.1 275 chr2L 20372220 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372495 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-737 461 chr2L 20383275 20383302 chr2L 20383358 20383361 4 67 6.5 5.0 5.8 0.6 86 chr2L 20383275 intergenic not near genes chr2L 20383318 intergenic not near genes chr2L 20383361 intergenic not near genes chr2L_4_20380001 chr2L_20380001 RAL-737 462 chr2L 20498690 20498708 chr2L 20498789 20498806 4 98 1.0 8.0 4.5 0.7 116 chr2L 20498690 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498806 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-737 463 chr2L 20568669 20568686 chr2L 20569059 20569076 X-element 9 389 4.5 6.5 5.5 1.4 407 chr2L 20568669 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_9_20565001 chr2L_20565001 RAL-737 464 chr2L 20576229 20576248 chr2L 20583695 20583696 blood 6 7464 7.0 5.5 6.2 0.8 7467 chr2L 20576229 intergenic not near genes chr2L 20579962 intergenic not near genes chr2L 20583696 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-737 465 chr2L 20601797 20601798 chr2L 20601873 20601876 4 78 8.0 4.5 6.2 0.6 79 chr2L 20601797 intron CR44909 - chr2L 20601836 intron CR44909 - chr2L 20601876 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-737 466 chr2L 20601801 20601814 chr2L 20601864 20601892 4 74 4.5 2.5 3.5 0.9 91 chr2L 20601801 intron CR44909 - chr2L 20601846 intron CR44909 - chr2L 20601892 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-737 467 chr2L 20602718 20602740 chr2L 20602806 20602828 10 87 2.5 0.5 1.5 4.0 110 chr2L 20602718 intron CR44909 - chr2L 20602773 intron CR44909 - chr2L 20602828 intron CR44909 - chr2L_10_20600001 chr2L_20600001 RAL-737 468 chr2L 20648182 20648228 chr2L 20648360 20648406 5 179 60.0 6.0 33.0 0.1 224 chr2L 20648182 intron Uhg3 + chr2L 20648294 5` UTR Uhg3 + chr2L 20648406 5` UTR Uhg3 + chr2L_5_20645001 chr2L_20645001 RAL-737 469 chr2L 20715572 20715580 chr2L 20715650 20715658 8 78 6.5 9.5 8.0 0.9 86 chr2L 20715572 intergenic not near genes chr2L 20715615 intergenic not near genes chr2L 20715658 intergenic not near genes chr2L_8_20715001 chr2L_20715001 RAL-737 470 chr2L 20818510 20818539 chr2L 20818591 20818599 13 76 4.0 2.0 3.0 3.2 89 chr2L 20818510 exon CheB38a - chr2L 20818554 intergenic CheB38a - chr2L 20818599 intergenic CheB38a - chr2L_13_20815001 chr2L_20815001 RAL-737 471 chr2L 20835807 20835834 chr2L 20836524 20836551 Quasimodo 9 716 2.5 4.0 3.2 2.1 744 chr2L 20835807 5` UTR Oseg5 - chr2L 20836179 intergenic Oseg5 -,Spn38F - chr2L 20836551 intergenic Spn38F - chr2L_9_20835001 chr2L_20835001 RAL-737 472 chr2L 20901471 20901489 chr2L 20902624 20902630 1360 7 1157 1.5 5.5 3.5 1.6 1159 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902050 intron,intron CG43739 -,sky - chr2L 20902630 intron,intron CG43739 -,sky - chr2L_7_20900001 chr2L_20900001 RAL-737 473 chr2L 20946946 20946960 chr2L 20947033 20947047 4 87 5.5 3.0 4.2 0.8 101 chr2L 20946946 intergenic CR44606 - chr2L 20946996 intergenic CR44606 - chr2L 20947047 intergenic CR44606 - chr2L_4_20945001 chr2L_20945001 RAL-737 474 chr2L 20976642 20976676 chr2L 20981457 20981477 X-element 13 4814 5.5 7.0 6.2 1.8 4835 chr2L 20976642 intron CG42238 - chr2L 20979060 intron CG42238 - chr2L 20981477 intron CG42238 - chr2L_13_20975001 chr2L_20975001 RAL-737 475 chr2L 20984737 20984772 chr2L 20984829 20984849 17 84 4.0 3.5 3.8 3.5 112 chr2L 20984737 intron CG42238 - chr2L 20984793 intron CG42238 - chr2L 20984849 intron CG42238 - chr2L_17_20980001 chr2L_20980001 RAL-737 476 chr2L 21020272 21020311 chr2L 21023948 21023973 NOF 12 3671 4.5 2.5 3.5 2.7 3701 chr2L 21020272 intron CG42238 - chr2L 21022122 intron CG42238 - chr2L 21023973 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-737 477 chr2L 21041143 21041166 chr2L 21049396 21049424 Tirant 12 8251 2.0 4.5 3.2 2.9 8281 chr2L 21041143 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049424 intron CG42238 - chr2L_12_21045001 chr2L_21045001 RAL-737 478 chr2L 21074918 21074952 chr2L 21075009 21075043 11 88 1.5 3.0 2.2 3.4 125 chr2L 21074918 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075043 intergenic tadr + chr2L_11_21070001 chr2L_21070001 RAL-737 479 chr2L 21081636 21081670 chr2L 21081770 21081802 9 130 4.5 9.0 6.8 1.2 166 chr2L 21081636 exon CG33511 - chr2L 21081719 exon CG33511 - chr2L 21081802 intron CG33511 - chr2L_9_21080001 chr2L_21080001 RAL-737 480 chr2L 21085047 21085083 chr2L 21085372 21085386 12 318 3.5 11.0 7.2 1.5 339 chr2L 21085047 exon CG33509 - chr2L 21085216 exon CG33509 - chr2L 21085386 exon CG33509 - chr2L_12_21085001 chr2L_21085001 RAL-737 481 chr2L 21091815 21091834 chr2L 21091901 21091920 10 86 5.5 9.5 7.5 1.2 105 chr2L 21091815 intron CG14397 + chr2L 21091868 intron CG14397 + chr2L 21091920 intron CG14397 + chr2L_10_21090001 chr2L_21090001 RAL-737 482 chr2L 21094037 21094064 chr2L 21096490 21096516 4 2453 43.0 24.0 33.5 0.1 2479 chr2L 21094037 intron CG14397 + chr2L 21095276 exon CG12050 - chr2L 21096516 intron CG12050 - chr2L_4_21095001 chr2L_21095001 RAL-737 483 chr2L 21286604 21286634 chr2L 21286682 21286712 13 77 3.5 4.0 3.8 2.7 108 chr2L 21286604 exon Mio - chr2L 21286658 intron Mio - chr2L 21286712 intron Mio - chr2L_13_21285001 chr2L_21285001 RAL-737 484 chr2L 21347550 21347581 chr2L 21355022 21355053 blood 8 7469 5.5 4.0 4.8 1.4 7503 chr2L 21347550 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355053 intron Tsp39D + chr2L_8_21350001 chr2L_21350001 RAL-737 485 chr2L 21392210 21392244 chr2L 21392296 21392329 8 77 1.0 1.0 1.0 4.0 119 chr2L 21392210 3` UTR nrv3 + chr2L 21392270 3` UTR nrv3 + chr2L 21392329 3` UTR nrv3 + chr2L_8_21390001 chr2L_21390001 RAL-737 486 chr2L 21597027 21597059 chr2L 21604771 21604798 roo 11 7736 4.5 4.0 4.2 2.1 7771 chr2L 21597027 intergenic not near genes chr2L 21600912 intergenic not near genes chr2L 21604798 intergenic not near genes chr2L_11_21600001 chr2L_21600001 RAL-737 487 chr2L 21836395 21836410 chr2L 21836484 21836500 4 90 8.0 5.0 6.5 0.5 105 chr2L 21836395 3` UTR tsh + chr2L 21836448 3` UTR tsh + chr2L 21836500 3` UTR tsh + chr2L_4_21835001 chr2L_21835001 RAL-737 488 chr2L 21855502 21855514 chr2L 21855561 21855601 5 75 1.5 2.5 2.0 1.7 99 chr2L 21855502 intron CR44917 + chr2L 21855552 intron CR44917 + chr2L 21855601 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-737 489 chr2L 21859325 21859336 chr2L 21859405 21859416 5 80 6.5 4.5 5.5 0.8 91 chr2L 21859325 intron CR44917 + chr2L 21859370 intron CR44917 + chr2L 21859416 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-737 490 chr2L 21859337 21859352 chr2L 21859403 21859432 4 71 4.0 4.5 4.2 0.8 95 chr2L 21859337 intron CR44917 + chr2L 21859384 intron CR44917 + chr2L 21859432 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-737 491 chr2L 21932586 21932614 chr2L 21932808 21932836 10 219 1.5 4.0 2.8 2.6 250 chr2L 21932586 intergenic not near genes chr2L 21932711 intergenic not near genes chr2L 21932836 intergenic not near genes chr2L_10_21930001 chr2L_21930001 RAL-737 492 chr2L 21981685 21981707 chr2L 21990850 21990872 roo 10 9162 4.0 9.0 6.5 1.3 9187 chr2L 21981685 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990872 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-737 493 chr2L 21997577 21997586 chr2L 21997784 21997793 5 207 2.5 6.5 4.5 0.9 216 chr2L 21997577 intergenic not near genes chr2L 21997685 intergenic not near genes chr2L 21997793 intergenic not near genes chr2L_5_21995001 chr2L_21995001 RAL-737 494 chr2L 21997588 21997599 chr2L 21997782 21997806 6 204 1.5 6.5 4.0 1.2 218 chr2L 21997588 intergenic not near genes chr2L 21997697 intergenic not near genes chr2L 21997806 intergenic not near genes chr2L_6_21995001 chr2L_21995001 RAL-737 495 chr2L 22001655 22001664 chr2L 22001731 22001740 7 76 3.5 4.5 4.0 1.4 85 chr2L 22001655 intergenic not near genes chr2L 22001698 intergenic not near genes chr2L 22001740 intergenic not near genes chr2L_7_22000001 chr2L_22000001 RAL-737 496 chr2L 22191333 22191347 chr2L 22198337 22198351 11 7004 32.5 44.5 38.5 0.3 7018 chr2L 22191333 intron Ir40a - chr2L 22194842 intron Ir40a - chr2L 22198351 intron Ir40a - chr2L_11_22190001 chr2L_22190001 RAL-737 497 chr2L 22191330 22191348 chr2L 22198352 22198352 4 7009 32.5 40.0 36.2 0.1 7022 chr2L 22191330 intron Ir40a - chr2L 22194841 intron Ir40a - chr2L 22198352 intron Ir40a - chr2L_4_22190001 chr2L_22190001 RAL-737 498 chr2L 22294356 22294387 chr2L 22294444 22294475 8 88 2.5 2.5 2.5 2.3 119 chr2L 22294356 intergenic not near genes chr2L 22294416 intergenic not near genes chr2L 22294475 intergenic not near genes chr2L_8_22290001 chr2L_22290001 RAL-737 499 chr2L 22319153 22319171 chr2L 22319899 22319909 4 740 5.5 6.0 5.8 0.6 756 chr2L 22319153 intron CG17018 + chr2L 22319531 intron CG17018 + chr2L 22319909 intron CG17018 + chr2L_4_22315001 chr2L_22315001 RAL-737 500 chr2L 22581978 22582001 chr2L 22583767 22583784 S-element 11 1788 5.0 6.5 5.8 1.6 1806 chr2L 22581978 intron CG17494 + chr2L 22582881 intron CG17494 + chr2L 22583784 intron CG17494 + chr2L_11_22580001 chr2L_22580001 RAL-737 501 chr2L 22776425 22776427 chr2L 22778213 22778216 S-element 4 1789 12.5 6.0 9.2 0.4 1791 chr2L 22776425 intergenic not near genes chr2L 22777320 intergenic not near genes chr2L 22778216 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-737 502 chr2L 22776428 22776451 chr2L 22778212 22778234 S-element 9 1788 4.5 6.0 5.2 1.5 1806 chr2L 22776428 intergenic not near genes chr2L 22777331 intergenic not near genes chr2L 22778234 intergenic not near genes chr2L_9_22775001 chr2L_22775001 RAL-737 503 chr2L 22968572 22968591 chr2L 22968654 22968663 7 83 4.0 5.0 4.5 1.3 91 chr2L 22968572 intergenic not near genes chr2L 22968618 intergenic not near genes chr2L 22968663 intergenic not near genes chr2L_7_22965001 chr2L_22965001 RAL-737 504 chr2R 469960 469969 chr2R 473200 473209 F-element 4 3240 4.0 4.5 4.2 0.8 3249 chr2R 469960 intergenic not near genes chr2R 471584 intergenic not near genes chr2R 473209 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-737 505 chr2R 529321 529357 chr2R 537946 537946 Max-element 8 8619 4.0 9.0 6.5 1.1 8625 chr2R 529321 intron CG40378 + chr2R 533634 intron CG40378 + chr2R 537946 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-737 506 chr2R 552772 552789 chr2R 553969 553970 1360 5 1202 1.0 1.5 1.2 2.3 1198 chr2R 552772 intron CG40378 + chr2R 553371 intron CG40378 + chr2R 553970 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-737 507 chr2R 624169 624183 chr2R 624253 624254 4 78 6.0 4.5 5.2 0.6 85 chr2R 624169 intron CG40378 + chr2R 624212 intron CG40378 + chr2R 624254 intron CG40378 + chr2R_4_620001 chr2R_620001 RAL-737 508 chr2R 1082366 1082369 chr2R 1087142 1087144 Doc 4 4776 9.5 8.5 9.0 0.4 4778 chr2R 1082366 intron rl + chr2R 1084755 intron rl + chr2R 1087144 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-737 509 chr2R 1082375 1082384 chr2R 1087130 1087148 Doc 6 4770 7.0 4.0 5.5 0.9 4773 chr2R 1082375 intron rl + chr2R 1084762 intron rl + chr2R 1087148 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-737 510 chr2R 1320198 1320201 chr2R 11463556 11463556 invader1 10 10143356 20.0 18.5 19.2 0.5 10143358 chr2R 1320198 intergenic not near genes chr2R 6391877 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_10_6390001 chr2R_6390001 RAL-737 511 chr2R 1346271 1346285 chr2R 1346378 1346384 5 105 2.5 9.0 5.8 0.7 113 chr2R 1346271 intergenic not near genes chr2R 1346328 intergenic not near genes chr2R 1346384 intergenic not near genes chr2R_5_1345001 chr2R_1345001 RAL-737 512 chr2R 1348465 1348492 chr2R 1348542 1348569 10 75 4.0 4.5 4.2 1.9 104 chr2R 1348465 3` UTR CR44042 - chr2R 1348517 3` UTR CR44042 - chr2R 1348569 3` UTR CR44042 - chr2R_10_1345001 chr2R_1345001 RAL-737 513 chr2R 1733371 1733397 chr2R 1733478 1733499 10 105 4.5 3.0 3.8 2.1 128 chr2R 1733371 intron CG41520 + chr2R 1733435 intron CG41520 + chr2R 1733499 intron CG41520 + chr2R_10_1730001 chr2R_1730001 RAL-737 514 chr2R 1875167 1875191 chr2R 1875523 1875526 Cr1a 9 354 2.5 4.0 3.2 2.1 359 chr2R 1875167 intron CG17684 - chr2R 1875346 intron CG17684 - chr2R 1875526 intron CG17684 - chr2R_9_1875001 chr2R_1875001 RAL-737 515 chr2R 2015133 2015165 chr2R 2015207 2015242 9 75 3.5 1.5 2.5 2.6 109 chr2R 2015133 intron CG17684 - chr2R 2015188 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_9_2015001 chr2R_2015001 RAL-737 516 chr2R 2093094 2093124 chr2R 2093175 2093205 7 81 3.5 3.5 3.5 1.6 111 chr2R 2093094 intron CG17684 - chr2R 2093150 intron CG17684 - chr2R 2093205 intron CG17684 - chr2R_7_2090001 chr2R_2090001 RAL-737 517 chr2R 2498982 2499018 chr2R 2508129 2508163 roo 16 9145 6.0 3.5 4.8 2.8 9181 chr2R 2498982 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_16_2500001 chr2R_2500001 RAL-737 518 chr2R 2508311 2508340 chr2R 2508449 2508473 6 133 1.5 4.5 3.0 1.5 162 chr2R 2508311 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508473 intron MFS17 - chr2R_6_2505001 chr2R_2505001 RAL-737 519 chr2R 2591552 2591568 chr2R 2594218 2594234 roo 5 2667 27.0 17.0 22.0 0.2 2682 chr2R 2591552 intergenic not near genes chr2R 2592893 intergenic not near genes chr2R 2594234 intergenic not near genes chr2R_5_2590001 chr2R_2590001 RAL-737 520 chr2R 2942288 2942324 chr2R 2942391 2942427 16 102 3.5 7.5 5.5 2.5 139 chr2R 2942288 intron Scp1 - chr2R 2942358 intron Scp1 - chr2R 2942427 intron Scp1 - chr2R_16_2940001 chr2R_2940001 RAL-737 521 chr2R 2950457 2950468 chr2R 2950560 2950590 4 117 9.0 6.5 7.8 0.5 133 chr2R 2950457 intron Scp1 - chr2R 2950524 intron Scp1 - chr2R 2950590 intron Scp1 - chr2R_4_2950001 chr2R_2950001 RAL-737 522 chr2R 3399234 3399262 chr2R 3399320 3399324 8 80 2.0 7.0 4.5 1.5 90 chr2R 3399234 intergenic not near genes chr2R 3399279 intergenic not near genes chr2R 3399324 intergenic not near genes chr2R_8_3395001 chr2R_3395001 RAL-737 523 chr2R 3532625 3532644 chr2R 3536068 3536087 Doc 5 3443 2.5 4.5 3.5 1.1 3462 chr2R 3532625 intergenic not near genes chr2R 3534356 intergenic not near genes chr2R 3536087 intergenic not near genes chr2R_5_3530001 chr2R_3530001 RAL-737 524 chr2R 3818932 3818943 chr2R 3819048 3819049 5 114 10.0 2.5 6.2 0.7 117 chr2R 3818932 intergenic not near genes chr2R 3818990 intergenic not near genes chr2R 3819049 intergenic not near genes chr2R_5_3815001 chr2R_3815001 RAL-737 525 chr2R 4161467 4161501 chr2R 4161543 4161577 13 70 5.5 4.0 4.8 2.2 110 chr2R 4161467 intergenic not near genes chr2R 4161522 intergenic not near genes chr2R 4161577 intergenic not near genes chr2R_13_4160001 chr2R_4160001 RAL-737 526 chr2R 4312950 4312987 chr2R 4313034 4313071 21 81 5.0 6.0 5.5 3.2 121 chr2R 4312950 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_21_4310001 chr2R_4310001 RAL-737 527 chr2R 4387297 4387312 chr2R 4387447 4387463 5 149 6.5 0.0 3.2 1.2 166 chr2R 4387297 intron Gprk1 - chr2R 4387380 intron Gprk1 - chr2R 4387463 intron Gprk1 - chr2R_5_4385001 chr2R_4385001 RAL-737 528 chr2R 4604549 4604583 chr2R 4604628 4604662 17 76 3.0 4.0 3.5 3.8 113 chr2R 4604549 intron p120ctn + chr2R 4604606 intron p120ctn + chr2R 4604662 intron p120ctn + chr2R_17_4600001 chr2R_4600001 RAL-737 529 chr2R 4622956 4622988 chr2R 4624111 4624146 1360 10 1149 5.0 9.0 7.0 1.2 1190 chr2R 4622956 intergenic CR44101 - chr2R 4623551 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-737 530 chr2R 4624644 4624662 chr2R 4626549 4626567 Bica 9 1905 6.0 10.0 8.0 1.0 1923 chr2R 4624644 intergenic not near genes chr2R 4625606 intergenic not near genes chr2R 4626567 intergenic not near genes chr2R_9_4625001 chr2R_4625001 RAL-737 531 chr2R 4624666 4624670 chr2R 4626546 4626571 Bica 8 1896 3.0 9.5 6.2 1.1 1905 chr2R 4624666 intergenic not near genes chr2R 4625618 intergenic not near genes chr2R 4626571 intergenic not near genes chr2R_8_4625001 chr2R_4625001 RAL-737 532 chr2R 4634156 4634171 chr2R 4634234 4634237 7 75 5.0 4.5 4.8 1.2 81 chr2R 4634156 intergenic not near genes chr2R 4634196 intergenic not near genes chr2R 4634237 intergenic not near genes chr2R_7_4630001 chr2R_4630001 RAL-737 533 chr2R 4750342 4750377 chr2R 4751499 4751532 1360 10 1150 4.0 3.5 3.8 2.1 1190 chr2R 4750342 intron conu + chr2R 4750937 intron conu + chr2R 4751532 intron conu + chr2R_10_4750001 chr2R_4750001 RAL-737 534 chr2R 4996340 4996348 chr2R 4996458 4996476 6 122 2.5 7.5 5.0 1.0 136 chr2R 4996340 intron Ir41a + chr2R 4996408 intron Ir41a + chr2R 4996476 intron Ir41a + chr2R_6_4995001 chr2R_4995001 RAL-737 535 chr2R 5075929 5075960 chr2R 5076092 5076122 4 162 38.0 30.0 34.0 0.1 193 chr2R 5075929 intergenic not near genes chr2R 5076026 intergenic not near genes chr2R 5076122 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-737 536 chr2R 5125251 5125276 chr2R 5125564 5125569 7 312 3.5 3.0 3.2 1.7 318 chr2R 5125251 intron gus - chr2R 5125410 intron gus - chr2R 5125569 intron gus - chr2R_7_5125001 chr2R_5125001 RAL-737 537 chr2R 5209779 5209813 chr2R 5210312 5210342 16 526 6.0 4.5 5.2 2.6 563 chr2R 5209779 intron Nipped-A - chr2R 5210060 intron Nipped-A - chr2R 5210342 intron Nipped-A - chr2R_16_5210001 chr2R_5210001 RAL-737 538 chr2R 5256757 5256791 chr2R 5256845 5256879 22 85 8.5 4.5 6.5 2.9 122 chr2R 5256757 intergenic not near genes chr2R 5256818 intergenic not near genes chr2R 5256879 intergenic not near genes chr2R_22_5255001 chr2R_5255001 RAL-737 539 chr2R 5302089 5302121 chr2R 5304237 5304264 6 2146 38.5 51.0 44.8 0.1 2175 chr2R 5302089 intergenic not near genes chr2R 5303176 intergenic not near genes chr2R 5304264 intergenic not near genes chr2R_6_5300001 chr2R_5300001 RAL-737 540 chr2R 5417995 5418027 chr2R 5420627 5420659 Burdock 19 2631 9.0 4.5 6.8 2.4 2664 chr2R 5417995 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_19_5415001 chr2R_5415001 RAL-737 541 chr2R 5421530 5421556 chr2R 5421614 5421640 12 84 28.0 22.0 25.0 0.5 110 chr2R 5421530 intron laccase2 + chr2R 5421585 intron laccase2 + chr2R 5421640 intron laccase2 + chr2R_12_5420001 chr2R_5420001 RAL-737 542 chr2R 5491663 5491678 chr2R 5491756 5491771 7 93 8.5 6.5 7.5 0.8 108 chr2R 5491663 intron CG30440 - chr2R 5491717 intron CG30440 - chr2R 5491771 intron CG30440 - chr2R_7_5490001 chr2R_5490001 RAL-737 543 chr2R 5491679 5491698 chr2R 5491755 5491790 15 85 3.5 6.5 5.0 2.5 111 chr2R 5491679 intron CG30440 - chr2R 5491734 intron CG30440 - chr2R 5491790 intron CG30440 - chr2R_15_5490001 chr2R_5490001 RAL-737 544 chr2R 5543205 5543222 chr2R 5547289 5547306 invader1 9 4083 0.5 5.0 2.8 2.4 4101 chr2R 5543205 intron CG30438 + chr2R 5545256 intron CG30438 + chr2R 5547306 intron CG30438 + chr2R_9_5545001 chr2R_5545001 RAL-737 545 chr2R 5581398 5581410 chr2R 5627607 5627619 4 46209 6.0 14.5 10.2 0.4 46221 chr2R 5581398 intergenic not near genes chr2R 5604508 exon Fis1 - chr2R 5627619 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-737 546 chr2R 5607712 5607734 chr2R 5607807 5607810 4 90 3.0 3.5 3.2 1.0 98 chr2R 5607712 intergenic not near genes chr2R 5607761 intergenic not near genes chr2R 5607810 intergenic not near genes chr2R_4_5605001 chr2R_5605001 RAL-737 547 chr2R 4284685 4284689 chr2R 5617504 5617529 Cr1a 4 1332828 17.0 16.5 16.8 0.2 1332844 chr2R 4284685 intergenic not near genes chr2R 4951107 intron Ir41a + chr2R 5617529 intergenic not near genes chr2R_4_4950001 chr2R_4950001 RAL-737 548 chr2R 5640019 5640036 chr2R 5640096 5640113 4 77 7.5 6.5 7.0 0.5 94 chr2R 5640019 intergenic not near genes chr2R 5640066 intergenic not near genes chr2R 5640113 intergenic not near genes chr2R_4_5640001 chr2R_5640001 RAL-737 549 chr2R 5694224 5694244 chr2R 5694311 5694331 8 88 5.0 6.5 5.8 1.2 107 chr2R 5694224 intergenic not near genes chr2R 5694278 intergenic not near genes chr2R 5694331 intergenic not near genes chr2R_8_5690001 chr2R_5690001 RAL-737 550 chr2R 5700070 5700077 chr2R 5700158 5700164 5 88 4.5 7.0 5.8 0.7 94 chr2R 5700070 exon CG17337 + chr2R 5700117 3` UTR CG17337 + chr2R 5700164 3` UTR CG17337 + chr2R_5_5700001 chr2R_5700001 RAL-737 551 chr2R 5712314 5712340 chr2R 5712391 5712393 9 74 6.5 8.5 7.5 1.1 79 chr2R 5712314 intron ap - chr2R 5712354 intron ap - chr2R 5712393 intron ap - chr2R_9_5710001 chr2R_5710001 RAL-737 552 chr2R 5606784 5606807 chr2R 5736772 5736805 4 130001 14.0 14.5 14.2 0.3 130021 chr2R 5606784 intergenic not near genes chr2R 5671794 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_4_5670001 chr2R_5670001 RAL-737 553 chr2R 5771464 5771488 chr2R 5771545 5771565 5 80 7.5 5.0 6.2 0.7 101 chr2R 5771464 intron Gp210 + chr2R 5771514 intron Gp210 + chr2R 5771565 intron Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-737 554 chr2R 5771490 5771497 chr2R 5771541 5771577 5 66 4.5 4.5 4.5 0.9 87 chr2R 5771490 intron Gp210 + chr2R 5771534 intron Gp210 + chr2R 5771577 intron Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-737 555 chr2R 5772522 5772547 chr2R 5772597 5772626 10 75 3.5 3.0 3.2 2.4 104 chr2R 5772522 3` UTR Gp210 + chr2R 5772574 3` UTR Gp210 + chr2R 5772626 3` UTR Gp210 + chr2R_10_5770001 chr2R_5770001 RAL-737 556 chr2R 5848965 5848990 chr2R 5849063 5849090 5 100 2.5 4.0 3.2 1.2 125 chr2R 5848965 intron dpr12 + chr2R 5849028 intron dpr12 + chr2R 5849090 intron dpr12 + chr2R_5_5845001 chr2R_5845001 RAL-737 557 chr2R 5852036 5852057 chr2R 5852135 5852160 5 98 1.0 3.0 2.0 1.7 124 chr2R 5852036 intron dpr12 + chr2R 5852098 intron dpr12 + chr2R 5852160 intron dpr12 + chr2R_5_5850001 chr2R_5850001 RAL-737 558 chr2R 5861289 5861313 chr2R 5861408 5861434 6 114 5.5 7.5 6.5 0.8 145 chr2R 5861289 intergenic dpr12 + chr2R 5861362 intergenic not near genes chr2R 5861434 intergenic not near genes chr2R_6_5860001 chr2R_5860001 RAL-737 559 chr2R 5869277 5869309 chr2R 5874353 5874385 flea 26 5073 7.5 10.5 9.0 2.6 5108 chr2R 5869277 intergenic not near genes chr2R 5871831 intergenic not near genes chr2R 5874385 intergenic not near genes chr2R_26_5870001 chr2R_5870001 RAL-737 560 chr2R 5876867 5876894 chr2R 5876969 5876996 8 98 7.0 2.0 4.5 1.5 129 chr2R 5876867 intergenic not near genes chr2R 5876932 intergenic not near genes chr2R 5876996 intergenic not near genes chr2R_8_5875001 chr2R_5875001 RAL-737 561 chr2R 5878928 5878944 chr2R 5879008 5879022 7 79 7.5 7.0 7.2 0.9 94 chr2R 5878928 intergenic CG44438 - chr2R 5878975 intergenic CG44438 - chr2R 5879022 intergenic CG44438 - chr2R_7_5875001 chr2R_5875001 RAL-737 562 chr2R 5878948 5878955 chr2R 5879006 5879034 4 69 4.0 6.5 5.2 0.6 86 chr2R 5878948 intergenic CG44438 - chr2R 5878991 intergenic CG44438 - chr2R 5879034 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-737 563 chr2R 5885365 5885378 chr2R 5885494 5885507 7 129 3.5 3.0 3.2 1.7 142 chr2R 5885365 5` UTR CR44125 + chr2R 5885436 5` UTR CR44125 + chr2R 5885507 5` UTR CR44125 + chr2R_7_5885001 chr2R_5885001 RAL-737 564 chr2R 5902154 5902194 chr2R 5909713 5909741 17.6 10 7558 3.0 3.5 3.2 2.4 7587 chr2R 5902154 intron CG43366 + chr2R 5905948 intron CG43366 + chr2R 5909741 intron CG43366 + chr2R_10_5905001 chr2R_5905001 RAL-737 565 chr2R 5947935 5947967 chr2R 5948086 5948118 11 151 5.0 3.0 4.0 2.2 183 chr2R 5947935 intergenic not near genes chr2R 5948026 intergenic not near genes chr2R 5948118 intergenic not near genes chr2R_11_5945001 chr2R_5945001 RAL-737 566 chr2R 5953081 5953094 chr2R 5953159 5953172 9 76 7.5 0.5 4.0 1.8 91 chr2R 5953081 intergenic not near genes chr2R 5953126 intergenic not near genes chr2R 5953172 intergenic not near genes chr2R_9_5950001 chr2R_5950001 RAL-737 567 chr2R 5978982 5979015 chr2R 5979198 5979231 19 215 4.5 7.0 5.8 2.8 249 chr2R 5978982 intron mle - chr2R 5979106 intron mle - chr2R 5979231 intron mle - chr2R_19_5975001 chr2R_5975001 RAL-737 568 chr2R 6037455 6037480 chr2R 6037540 6037565 10 85 2.5 2.5 2.5 2.9 110 chr2R 6037455 intron CG14591 - chr2R 6037510 intron CG14591 - chr2R 6037565 intron CG14591 - chr2R_10_6035001 chr2R_6035001 RAL-737 569 chr2R 6086458 6086485 chr2R 6087326 6087353 10 868 4.0 7.5 5.8 1.5 895 chr2R 6086458 intergenic not near genes chr2R 6086906 intergenic not near genes chr2R 6087353 intergenic not near genes chr2R_10_6085001 chr2R_6085001 RAL-737 570 chr2R 6096721 6096751 chr2R 6101915 6101926 BS 4 5190 4.5 3.0 3.8 0.8 5205 chr2R 6096721 intron EcR - chr2R 6099324 intron EcR - chr2R 6101926 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-737 571 chr2R 6129337 6129358 chr2R 6129415 6129436 11 77 1.5 6.5 4.0 2.2 99 chr2R 6129337 intron EcR - chr2R 6129386 intron EcR - chr2R 6129436 intron EcR - chr2R_11_6125001 chr2R_6125001 RAL-737 572 chr2R 6144412 6144440 chr2R 6144496 6144524 17 82 5.5 8.5 7.0 2.1 112 chr2R 6144412 intron EcR - chr2R 6144468 intron EcR - chr2R 6144524 intron EcR - chr2R_17_6140001 chr2R_6140001 RAL-737 573 chr2R 6168194 6168229 chr2R 6168276 6168311 19 80 3.0 1.5 2.2 5.9 117 chr2R 6168194 intron EcR - chr2R 6168252 intron EcR - chr2R 6168311 intron EcR - chr2R_19_6165001 chr2R_6165001 RAL-737 574 chr2R 6178120 6178145 chr2R 6178246 6178271 6 125 3.0 5.0 4.0 1.2 151 chr2R 6178120 intergenic not near genes chr2R 6178196 intergenic not near genes chr2R 6178271 intergenic not near genes chr2R_6_6175001 chr2R_6175001 RAL-737 575 chr2R 6494526 6494548 chr2R 6499288 6499309 F-element 8 4761 3.0 2.0 2.5 2.3 4783 chr2R 6494526 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499309 intergenic not near genes chr2R_8_6495001 chr2R_6495001 RAL-737 576 chr2R 6530772 6530796 chr2R 6530847 6530876 8 79 5.0 3.5 4.2 1.5 104 chr2R 6530772 intron jing + chr2R 6530824 intron jing + chr2R 6530876 intron jing + chr2R_8_6530001 chr2R_6530001 RAL-737 577 chr2R 6541071 6541102 chr2R 6541147 6541177 11 74 7.0 4.0 5.5 1.7 106 chr2R 6541071 intron jing + chr2R 6541124 intron jing + chr2R 6541177 intron jing + chr2R_11_6540001 chr2R_6540001 RAL-737 578 chr2R 6551992 6552025 chr2R 6552094 6552127 8 100 1.5 1.5 1.5 3.2 135 chr2R 6551992 intron jing + chr2R 6552060 intron jing + chr2R 6552127 intron jing + chr2R_8_6550001 chr2R_6550001 RAL-737 579 chr2R 6579772 6579806 chr2R 6584858 6584892 flea 9 5086 4.0 2.5 3.2 2.1 5120 chr2R 6579772 intron jing + chr2R 6582332 intron jing + chr2R 6584892 intron jing + chr2R_9_6580001 chr2R_6580001 RAL-737 580 chr2R 6612142 6612157 chr2R 6612216 6612237 4 78 4.0 9.5 6.8 0.5 95 chr2R 6612142 intron jing + chr2R 6612190 intron jing + chr2R 6612237 intron jing + chr2R_4_6610001 chr2R_6610001 RAL-737 581 chr2R 6633199 6633208 chr2R 6633276 6633285 4 77 5.5 2.0 3.8 0.8 86 chr2R 6633199 intergenic Vha16-1 -,Trap1 - chr2R 6633242 intergenic Vha16-1 -,Trap1 - chr2R 6633285 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-737 582 chr2R 6633220 6633228 chr2R 6633274 6633305 6 67 4.0 1.5 2.8 1.6 85 chr2R 6633220 intergenic Vha16-1 -,Trap1 - chr2R 6633262 intergenic Vha16-1 -,Trap1 - chr2R 6633305 intergenic Vha16-1 -,Trap1 - chr2R_6_6630001 chr2R_6630001 RAL-737 583 chr2R 6646798 6646829 chr2R 6647071 6647094 12 269 6.5 3.5 5.0 2.0 296 chr2R 6646798 intergenic not near genes chr2R 6646946 intergenic not near genes chr2R 6647094 intergenic not near genes chr2R_12_6645001 chr2R_6645001 RAL-737 584 chr2R 6647342 6647359 chr2R 6647418 6647435 11 76 7.5 5.5 6.5 1.5 93 chr2R 6647342 intergenic not near genes chr2R 6647388 intergenic not near genes chr2R 6647435 intergenic not near genes chr2R_11_6645001 chr2R_6645001 RAL-737 585 chr2R 6699593 6699624 chr2R 6699678 6699709 14 85 2.0 4.0 3.0 3.5 116 chr2R 6699593 intergenic Rab2 + chr2R 6699651 intergenic Rab2 + chr2R 6699709 intergenic Rab2 + chr2R_14_6695001 chr2R_6695001 RAL-737 586 chr2R 6846295 6846324 chr2R 6846625 6846656 15 329 3.0 7.0 5.0 2.5 361 chr2R 6846295 intergenic not near genes chr2R 6846476 intergenic not near genes chr2R 6846656 intergenic not near genes chr2R_15_6845001 chr2R_6845001 RAL-737 587 chr2R 6887532 6887564 chr2R 6887621 6887653 11 88 4.0 4.5 4.2 2.1 121 chr2R 6887532 intron Spn42De + chr2R 6887592 intron Spn42De + chr2R 6887653 intron Spn42De + chr2R_11_6885001 chr2R_6885001 RAL-737 588 chr2R 6952164 6952184 chr2R 6959744 6959760 opus 8 7580 4.0 4.5 4.2 1.5 7596 chr2R 6952164 intron,intron mim -,CheB42c - chr2R 6955962 intron,intron mim -,CheB42c - chr2R 6959760 intron,intron mim -,CheB42c - chr2R_8_6955001 chr2R_6955001 RAL-737 589 chr2R 6964285 6964316 chr2R 6964361 6964393 7 76 1.5 5.5 3.5 1.6 108 chr2R 6964285 intron,intron mim -,CheB42c - chr2R 6964339 intron,intron mim -,CheB42c - chr2R 6964393 intron,intron mim -,CheB42c - chr2R_7_6960001 chr2R_6960001 RAL-737 590 chr2R 7102647 7102667 chr2R 7102747 7102767 5 100 4.0 2.5 3.2 1.2 120 chr2R 7102647 intron esn + chr2R 7102707 intron esn + chr2R 7102767 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-737 591 chr2R 7196577 7196598 chr2R 7201337 7201367 F-element 9 4771 5.0 1.0 3.0 2.2 4790 chr2R 7196577 intron pk + chr2R 7198972 intron pk + chr2R 7201367 intron pk + chr2R_9_7195001 chr2R_7195001 RAL-737 592 chr2R 7235819 7235848 chr2R 7240910 7240937 jockey 4 5090 5.0 4.5 4.8 0.7 5118 chr2R 7235819 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240937 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-737 593 chr2R 7252503 7252529 chr2R 7253266 7253271 4 757 4.0 3.0 3.5 0.9 768 chr2R 7252503 intergenic not near genes chr2R 7252887 intergenic not near genes chr2R 7253271 intergenic not near genes chr2R_4_7250001 chr2R_7250001 RAL-737 594 chr2R 7328128 7328152 chr2R 7328239 7328263 12 108 3.5 5.5 4.5 2.2 135 chr2R 7328128 intron,intron Dscam1 -,CR45129 + chr2R 7328196 intron,intron Dscam1 -,CR45129 + chr2R 7328263 intron,intron Dscam1 -,CR45129 + chr2R_12_7325001 chr2R_7325001 RAL-737 595 chr2R 7389578 7389600 chr2R 7389680 7389702 6 99 5.5 5.5 5.5 0.9 124 chr2R 7389578 intron CG11107 + chr2R 7389640 intron CG11107 + chr2R 7389702 intron CG11107 + chr2R_6_7385001 chr2R_7385001 RAL-737 596 chr2R 7418147 7418159 chr2R 7418226 7418236 8 78 8.0 6.5 7.2 1.0 89 chr2R 7418147 intergenic not near genes chr2R 7418192 intergenic not near genes chr2R 7418236 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-737 597 chr2R 7434892 7434917 chr2R 7439193 7439218 Juan 9 4300 5.5 7.0 6.2 1.2 4326 chr2R 7434892 intergenic so + chr2R 7437055 intergenic not near genes chr2R 7439218 intergenic not near genes chr2R_9_7435001 chr2R_7435001 RAL-737 598 chr2R 7563096 7563126 chr2R 7563174 7563205 10 78 5.0 3.5 4.2 1.9 109 chr2R 7563096 3` UTR Corin + chr2R 7563150 3` UTR Corin + chr2R 7563205 3` UTR Corin + chr2R_10_7560001 chr2R_7560001 RAL-737 599 chr2R 7608407 7608421 chr2R 7613610 7613624 I-element 4 5203 4.5 1.5 3.0 1.0 5217 chr2R 7608407 intron CG1358 - chr2R 7611016 intron CG1358 - chr2R 7613624 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-737 600 chr2R 7608425 7608444 chr2R 7613605 7613615 I-element 10 5190 3.5 1.5 2.5 2.9 5190 chr2R 7608425 intron CG1358 - chr2R 7611020 intron CG1358 - chr2R 7613615 intron CG1358 - chr2R_10_7610001 chr2R_7610001 RAL-737 601 chr2R 7692012 7692038 chr2R 7692093 7692119 6 80 4.5 3.0 3.8 1.2 107 chr2R 7692012 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692119 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-737 602 chr2R 7743300 7743327 chr2R 7743379 7743412 6 76 5.0 9.0 7.0 0.8 112 chr2R 7743300 intron,intron CG30497 -,CG45093 - chr2R 7743356 intron,intron CG30497 -,CG45093 - chr2R 7743412 intron,intron CG30497 -,CG45093 - chr2R_6_7740001 chr2R_7740001 RAL-737 603 chr2R 7815675 7815692 chr2R 7822144 7822161 Burdock 6 6469 6.5 8.0 7.2 0.7 6486 chr2R 7815675 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822161 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-737 604 chr2R 7815696 7815704 chr2R 7822142 7822173 Burdock 5 6458 4.5 8.0 6.2 0.7 6477 chr2R 7815696 intergenic CG1882 + chr2R 7818934 intergenic not near genes chr2R 7822173 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-737 605 chr2R 7869189 7869216 chr2R 7873975 7874000 Doc 14 4782 8.0 5.0 6.5 1.9 4811 chr2R 7869189 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874000 intron Dgk - chr2R_14_7870001 chr2R_7870001 RAL-737 606 chr2R 7899531 7899533 chr2R 10066494 10066495 4 2166963 8.5 20.5 14.5 0.3 2166964 chr2R 7899531 intron CG30377 + chr2R 8983013 intron CG8213 - chr2R 10066495 5` UTR CG2292 - chr2R_4_8980001 chr2R_8980001 RAL-737 607 chr2R 7910859 7910891 chr2R 7912466 7912485 5 1601 40.0 28.5 34.2 0.1 1626 chr2R 7910859 intron CG30377 + chr2R 7911672 intron CG30377 + chr2R 7912485 intron CG30377 + chr2R_5_7910001 chr2R_7910001 RAL-737 608 chr2R 7942185 7942208 chr2R 7942276 7942299 9 91 3.0 5.0 4.0 1.8 114 chr2R 7942185 3` UTR CG14764 - chr2R 7942242 3` UTR CG14764 - chr2R 7942299 3` UTR CG14764 - chr2R_9_7940001 chr2R_7940001 RAL-737 609 chr2R 7942972 7942974 chr2R 7943027 7943059 4 66 3.5 1.5 2.5 1.1 87 chr2R 7942972 intron CG14764 - chr2R 7943016 intron CG14764 - chr2R 7943059 intron CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-737 610 chr2R 7944786 7944819 chr2R 7944871 7944904 18 83 5.5 5.5 5.5 2.8 118 chr2R 7944786 intron CG14764 - chr2R 7944845 intron,exon CG14764 -,CG34431 + chr2R 7944904 intron,exon CG14764 -,CG34431 + chr2R_18_7940001 chr2R_7940001 RAL-737 611 chr2R 7956090 7956113 chr2R 7956166 7956184 6 75 2.5 6.0 4.2 1.2 94 chr2R 7956090 intergenic CG2906 +,CG14764 - chr2R 7956137 intergenic CG2906 +,CG14764 - chr2R 7956184 5` UTR CG2906 + chr2R_6_7955001 chr2R_7955001 RAL-737 612 chr2R 8006844 8006878 chr2R 8007003 8007037 17 158 4.0 5.5 4.8 2.9 193 chr2R 8006844 intergenic Odc1 +,Odc2 + chr2R 8006940 intergenic Odc1 +,Odc2 + chr2R 8007037 intergenic Odc2 +,Odc1 + chr2R_17_8005001 chr2R_8005001 RAL-737 613 chr2R 8008864 8008868 chr2R 8008963 8008965 4 98 5.0 7.5 6.2 0.6 101 chr2R 8008864 exon Odc2 + chr2R 8008914 exon Odc2 + chr2R 8008965 exon Odc2 + chr2R_4_8005001 chr2R_8005001 RAL-737 614 chr2R 8008869 8008894 chr2R 8008961 8008972 14 94 1.5 6.0 3.8 2.9 103 chr2R 8008869 exon Odc2 + chr2R 8008920 exon Odc2 + chr2R 8008972 exon Odc2 + chr2R_14_8005001 chr2R_8005001 RAL-737 615 chr2R 8026810 8026833 chr2R 8026886 8026909 10 76 3.0 2.0 2.5 2.9 99 chr2R 8026810 intergenic CR45267 + chr2R 8026860 intergenic CR45267 + chr2R 8026909 intergenic CR45267 + chr2R_10_8025001 chr2R_8025001 RAL-737 616 chr2R 8067066 8067096 chr2R 8067150 8067180 12 81 3.5 7.5 5.5 1.8 114 chr2R 8067066 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067180 exon CG17977 - chr2R_12_8065001 chr2R_8065001 RAL-737 617 chr2R 8076680 8076709 chr2R 8076760 8076768 18 77 5.0 5.0 5.0 3.0 88 chr2R 8076680 intron lig + chr2R 8076724 intron lig + chr2R 8076768 intron lig + chr2R_18_8075001 chr2R_8075001 RAL-737 618 chr2R 8089258 8089284 chr2R 8089344 8089346 16 84 3.5 4.5 4.0 3.2 88 chr2R 8089258 3` UTR sut2 + chr2R 8089302 intergenic sut2 +,sut3 + chr2R 8089346 intergenic sut2 +,sut3 + chr2R_16_8085001 chr2R_8085001 RAL-737 619 chr2R 8160936 8160952 chr2R 8161026 8161040 1360 13 87 5.5 15.0 10.2 1.2 104 chr2R 8160936 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161040 intron CG8708 - chr2R_13_8160001 chr2R_8160001 RAL-737 620 chr2R 8191284 8191306 chr2R 8191376 8191398 13 91 4.5 8.5 6.5 1.7 114 chr2R 8191284 intron LRP1 + chr2R 8191341 intron LRP1 + chr2R 8191398 intron LRP1 + chr2R_13_8190001 chr2R_8190001 RAL-737 621 chr2R 8236036 8236046 chr2R 8236117 8236127 4 80 4.0 3.0 3.5 0.9 91 chr2R 8236036 intergenic not near genes chr2R 8236082 intergenic not near genes chr2R 8236127 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-737 622 chr2R 8277635 8277667 chr2R 8277730 8277762 14 84 2.5 3.5 3.0 3.5 127 chr2R 8277635 5` UTR CR44280 + chr2R 8277698 5` UTR CR44280 + chr2R 8277762 5` UTR CR44280 + chr2R_14_8275001 chr2R_8275001 RAL-737 623 chr2R 8330861 8330895 chr2R 8331347 8331380 roo 12 482 2.0 3.5 2.8 3.2 519 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_12_8330001 chr2R_8330001 RAL-737 624 chr2R 8430158 8430186 chr2R 8430240 8430269 13 81 7.5 0.0 3.8 2.7 111 chr2R 8430158 3` UTR Lcp1 - chr2R 8430214 3` UTR Lcp1 - chr2R 8430269 3` UTR Lcp1 - chr2R_13_8430001 chr2R_8430001 RAL-737 625 chr2R 8452035 8452054 chr2R 8452118 8452122 4 76 5.0 6.0 5.5 0.6 87 chr2R 8452035 intergenic Mal-A1 - chr2R 8452078 intergenic Mal-A1 - chr2R 8452122 intergenic Mal-A1 - chr2R_4_8450001 chr2R_8450001 RAL-737 626 chr2R 8489728 8489758 chr2R 8489806 8489837 11 73 1.0 5.0 3.0 2.8 109 chr2R 8489728 intron mtt - chr2R 8489782 intron mtt - chr2R 8489837 intron mtt - chr2R_11_8485001 chr2R_8485001 RAL-737 627 chr2R 8540594 8540617 chr2R 8540812 8540836 11 219 4.5 5.5 5.0 1.8 242 chr2R 8540594 intergenic not near genes chr2R 8540715 intergenic not near genes chr2R 8540836 intergenic not near genes chr2R_11_8540001 chr2R_8540001 RAL-737 628 chr2R 8566048 8566067 chr2R 8566983 8567013 1360 4 943 8.0 0.0 4.0 0.8 965 chr2R 8566048 5` UTR Cyp6a14 - chr2R 8566530 5` UTR Cyp6a14 - chr2R 8567013 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-737 629 chr2R 8568738 8568772 chr2R 8568819 8568841 10 80 4.5 5.0 4.8 1.7 103 chr2R 8568738 intergenic not near genes chr2R 8568790 intergenic not near genes chr2R 8568841 intergenic not near genes chr2R_10_8565001 chr2R_8565001 RAL-737 630 chr2R 8569864 8569880 chr2R 8569970 8569982 4 104 6.5 11.0 8.8 0.4 118 chr2R 8569864 intergenic not near genes chr2R 8569923 intergenic not near genes chr2R 8569982 intergenic not near genes chr2R_4_8565001 chr2R_8565001 RAL-737 631 chr2R 8573010 8573036 chr2R 8573094 8573120 11 84 7.0 4.0 5.5 1.7 110 chr2R 8573010 intergenic CG42326 - chr2R 8573065 intergenic CG42326 - chr2R 8573120 intergenic CG42326 - chr2R_11_8570001 chr2R_8570001 RAL-737 632 chr2R 8612579 8612606 chr2R 8612656 8612683 8 76 6.5 5.5 6.0 1.1 104 chr2R 8612579 intron CG8642 - chr2R 8612631 intron CG8642 - chr2R 8612683 intron CG8642 - chr2R_8_8610001 chr2R_8610001 RAL-737 633 chr2R 8722434 8722450 chr2R 8722511 8722525 12 77 7.5 5.0 6.2 1.7 91 chr2R 8722434 intron CG14767 - chr2R 8722480 intron CG14767 - chr2R 8722525 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-737 634 chr2R 8722451 8722464 chr2R 8722507 8722541 5 66 5.0 5.0 5.0 0.8 90 chr2R 8722451 intron CG14767 - chr2R 8722496 intron CG14767 - chr2R 8722541 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-737 635 chr2R 8722771 8722785 chr2R 8723009 8723026 pogo 5 239 5.0 7.5 6.2 0.7 255 chr2R 8722771 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723026 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-737 636 chr2R 8722790 8722794 chr2R 8723008 8723034 pogo 5 236 3.0 7.5 5.2 0.8 244 chr2R 8722790 intron CG14767 - chr2R 8722912 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-737 637 chr2R 8731862 8731876 chr2R 8732079 8732098 7 222 6.5 7.5 7.0 0.9 236 chr2R 8731862 intron stmA - chr2R 8731980 intron stmA - chr2R 8732098 intron stmA - chr2R_7_8730001 chr2R_8730001 RAL-737 638 chr2R 8849235 8849266 chr2R 8849313 8849344 11 78 5.0 1.5 3.2 2.6 109 chr2R 8849235 intron sns + chr2R 8849290 intron sns + chr2R 8849344 intron sns + chr2R_11_8845001 chr2R_8845001 RAL-737 639 chr2R 8976207 8976224 chr2R 8976296 8976313 5 89 2.5 5.0 3.8 1.0 106 chr2R 8976207 intron CG8213 - chr2R 8976260 intron CG8213 - chr2R 8976313 intron CG8213 - chr2R_5_8975001 chr2R_8975001 RAL-737 640 chr2R 9055788 9055823 chr2R 9055868 9055903 8 76 10.0 6.5 8.2 0.9 115 chr2R 9055788 intron CG13743 - chr2R 9055846 intron CG13743 - chr2R 9055903 intron CG13743 - chr2R_8_9055001 chr2R_9055001 RAL-737 641 chr2R 9132103 9132136 chr2R 9132180 9132213 8 77 2.0 4.0 3.0 2.0 110 chr2R 9132103 intergenic CG18659 -,Hydr1 + chr2R 9132158 intergenic CG18659 -,Hydr1 + chr2R 9132213 intergenic CG18659 -,Hydr1 + chr2R_8_9130001 chr2R_9130001 RAL-737 642 chr2R 9151300 9151324 chr2R 9157770 9157776 Burdock 15 6467 5.5 6.0 5.8 2.2 6476 chr2R 9151300 exon CG30345 + chr2R 9154538 intergenic not near genes chr2R 9157776 intergenic CG8008 - chr2R_15_9150001 chr2R_9150001 RAL-737 643 chr2R 9183140 9183162 chr2R 9183222 9183244 7 82 4.0 6.0 5.0 1.2 104 chr2R 9183140 intron ltd - chr2R 9183192 intron ltd - chr2R 9183244 intron ltd - chr2R_7_9180001 chr2R_9180001 RAL-737 644 chr2R 9191909 9191913 chr2R 9191994 9191999 4 85 17.5 5.5 11.5 0.3 90 chr2R 9191909 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191954 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191999 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_4_9190001 chr2R_9190001 RAL-737 645 chr2R 9191919 9191939 chr2R 9191989 9192024 7 81 6.5 4.0 5.2 1.1 105 chr2R 9191919 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191972 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192024 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_7_9190001 chr2R_9190001 RAL-737 646 chr2R 9248020 9248032 chr2R 9248089 9248115 5 74 0.0 5.0 2.5 1.4 95 chr2R 9248020 intergenic not near genes chr2R 9248068 intergenic not near genes chr2R 9248115 intergenic not near genes chr2R_5_9245001 chr2R_9245001 RAL-737 647 chr2R 9368126 9368153 chr2R 9368201 9368229 8 74 3.0 1.0 2.0 2.7 103 chr2R 9368126 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-737 648 chr2R 9405479 9405492 chr2R 9405599 9405613 5 121 7.5 4.5 6.0 0.7 134 chr2R 9405479 intron wun - chr2R 9405546 intron wun - chr2R 9405613 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-737 649 chr2R 9405493 9405510 chr2R 9405597 9405632 10 115 1.5 4.0 2.8 2.6 139 chr2R 9405493 intron wun - chr2R 9405562 intron wun - chr2R 9405632 intron wun - chr2R_10_9405001 chr2R_9405001 RAL-737 650 chr2R 9480075 9480110 chr2R 9490606 9490641 roo 14 10531 3.0 4.5 3.8 2.9 10566 chr2R 9480075 intergenic not near genes chr2R 9485358 intergenic not near genes chr2R 9490641 intergenic not near genes chr2R_14_9485001 chr2R_9485001 RAL-737 651 chr2R 9583350 9583382 chr2R 9583523 9583553 10 164 2.0 7.5 4.8 1.7 203 chr2R 9583350 exon CG1868 - chr2R 9583452 exon CG1868 - chr2R 9583553 intron CG1868 - chr2R_10_9580001 chr2R_9580001 RAL-737 652 chr2R 9599928 9599960 chr2R 9600024 9600055 11 92 6.0 7.5 6.8 1.4 127 chr2R 9599928 intron,exon CG1902 +,CG30340 - chr2R 9599992 intron,exon CG1902 +,CG30340 - chr2R 9600055 intron,exon CG1902 +,CG30340 - chr2R_11_9595001 chr2R_9595001 RAL-737 653 chr2R 9726615 9726635 chr2R 9734166 9734186 17.6 10 7550 5.5 5.5 5.5 1.5 7571 chr2R 9726615 intron sqa - chr2R 9730400 intron sqa - chr2R 9734186 intron sqa - chr2R_10_9730001 chr2R_9730001 RAL-737 654 chr2R 10005558 10005584 chr2R 10005655 10005681 16 96 4.5 3.0 3.8 3.3 123 chr2R 10005558 intron Pka-R2 - chr2R 10005620 intron Pka-R2 - chr2R 10005681 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-737 655 chr2R 10005854 10005884 chr2R 10007018 10007027 1360 10 1157 1.5 7.0 4.2 1.9 1173 chr2R 10005854 intron Pka-R2 - chr2R 10006440 intron Pka-R2 - chr2R 10007027 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-737 656 chr2R 10059267 10059292 chr2R 10059656 10059681 5 387 5.5 3.5 4.5 0.9 414 chr2R 10059267 intron magu + chr2R 10059474 intron magu + chr2R 10059681 intron magu + chr2R_5_10055001 chr2R_10055001 RAL-737 657 chr2R 10086920 10086932 chr2R 10087017 10087029 4 94 2.5 5.5 4.0 0.8 109 chr2R 10086920 intron,exon CG2269 +,sut4 - chr2R 10086974 intron,5` UTR CG2269 +,sut4 - chr2R 10087029 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-737 658 chr2R 10122743 10122748 chr2R 10122951 10122958 5 210 5.5 4.5 5.0 0.8 215 chr2R 10122743 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122958 intergenic Ccs - chr2R_5_10120001 chr2R_10120001 RAL-737 659 chr2R 10132205 10132216 chr2R 10132284 10132296 6 80 4.0 5.0 4.5 1.1 91 chr2R 10132205 intron gem + chr2R 10132250 intron gem + chr2R 10132296 intron gem + chr2R_6_10130001 chr2R_10130001 RAL-737 660 chr2R 10160899 10160908 chr2R 10161111 10161120 6 212 6.0 3.0 4.5 1.1 221 chr2R 10160899 intron KCNQ - chr2R 10161010 intron KCNQ - chr2R 10161120 intron KCNQ - chr2R_6_10160001 chr2R_10160001 RAL-737 661 chr2R 10176902 10176912 chr2R 10186069 10186079 roo 6 9167 4.5 3.0 3.8 1.2 9177 chr2R 10176902 intron KCNQ - chr2R 10181490 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-737 662 chr2R 10203641 10203660 chr2R 10203726 10203745 10 85 6.5 2.0 4.2 1.9 104 chr2R 10203641 intergenic not near genes chr2R 10203693 intergenic not near genes chr2R 10203745 intergenic not near genes chr2R_10_10200001 chr2R_10200001 RAL-737 663 chr2R 10216192 10216210 chr2R 10216270 10216288 10 76 5.5 2.5 4.0 2.0 96 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216240 intron,intron CG12912 -,Hr46 - chr2R 10216288 intron,intron CG12912 -,Hr46 - chr2R_10_10215001 chr2R_10215001 RAL-737 664 chr2R 10216216 10216221 chr2R 10216268 10216280 8 67 3.5 2.5 3.0 2.0 64 chr2R 10216216 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216280 intron,intron CG12912 -,Hr46 - chr2R_8_10215001 chr2R_10215001 RAL-737 665 chr2R 10225736 10225746 chr2R 10225818 10225828 8 81 2.5 5.5 4.0 1.6 92 chr2R 10225736 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225828 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-737 666 chr2R 10257171 10257193 chr2R 10257262 10257284 8 90 2.0 3.5 2.8 2.1 113 chr2R 10257171 intron CG12911 + chr2R 10257228 intron CG12911 + chr2R 10257284 intron CG12911 + chr2R_8_10255001 chr2R_10255001 RAL-737 667 chr2R 10274823 10274828 chr2R 10274900 10274905 4 77 6.5 1.5 4.0 0.8 82 chr2R 10274823 intron CAP + chr2R 10274864 intron CAP + chr2R 10274905 intron CAP + chr2R_4_10270001 chr2R_10270001 RAL-737 668 chr2R 10300644 10300679 chr2R 10300740 10300775 13 92 5.0 0.0 2.5 3.7 131 chr2R 10300644 intron CAP + chr2R 10300710 intron CAP + chr2R 10300775 intron CAP + chr2R_13_10300001 chr2R_10300001 RAL-737 669 chr2R 10313328 10313351 chr2R 10313409 10313439 9 87 2.0 7.0 4.5 1.6 111 chr2R 10313328 intergenic not near genes chr2R 10313384 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_9_10310001 chr2R_10310001 RAL-737 670 chr2R 10350988 10350998 chr2R 10351069 10351073 4 82 2.0 2.5 2.2 1.2 85 chr2R 10350988 intron CG42732 - chr2R 10351030 intron CG42732 - chr2R 10351073 intron CG42732 - chr2R_4_10350001 chr2R_10350001 RAL-737 671 chr2R 10352674 10352704 chr2R 10352751 10352781 15 72 3.5 4.5 4.0 3.0 107 chr2R 10352674 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352781 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_15_10350001 chr2R_10350001 RAL-737 672 chr2R 10409066 10409085 chr2R 10409142 10409161 11 76 2.5 6.0 4.2 2.1 95 chr2R 10409066 intron CG42732 - chr2R 10409114 intron CG42732 - chr2R 10409161 intron,exon CG42732 -,CG33477 - chr2R_11_10405001 chr2R_10405001 RAL-737 673 chr2R 10429029 10429042 chr2R 10429100 10429119 9 72 6.5 6.5 6.5 1.2 90 chr2R 10429029 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429119 intergenic not near genes chr2R_9_10425001 chr2R_10425001 RAL-737 674 chr2R 10429045 10429052 chr2R 10429097 10429113 4 58 3.5 6.0 4.8 0.7 68 chr2R 10429045 intergenic not near genes chr2R 10429079 intergenic not near genes chr2R 10429113 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-737 675 chr2R 10453356 10453381 chr2R 10453446 10453470 5 90 3.5 8.0 5.8 0.7 114 chr2R 10453356 intron,intron Galphao +,Cyp49a1 - chr2R 10453413 intron,intron Galphao +,Cyp49a1 - chr2R 10453470 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-737 676 chr2R 10454096 10454130 chr2R 10454172 10454207 22 73 5.0 7.0 6.0 3.1 111 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_22_10450001 chr2R_10450001 RAL-737 677 chr2R 10469021 10469054 chr2R 10469147 10469175 19 125 3.0 3.0 3.0 4.8 154 chr2R 10469021 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469175 intron CG11777 + chr2R_19_10465001 chr2R_10465001 RAL-737 678 chr2R 10585574 10585590 chr2R 10594140 10594173 Tirant 6 8580 6.5 2.0 4.2 1.2 8599 chr2R 10585574 intron psq + chr2R 10589874 intron psq + chr2R 10594173 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-737 679 chr2R 10622355 10622385 chr2R 10637120 10637146 mdg1 9 14764 4.0 6.0 5.0 1.5 14791 chr2R 10622355 intron CG11883 + chr2R 10629750 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_9_10625001 chr2R_10625001 RAL-737 680 chr2R 10642917 10642927 chr2R 10642974 10642979 7 60 3.5 6.0 4.8 1.2 62 chr2R 10642917 exon Git - chr2R 10642948 intron Git - chr2R 10642979 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-737 681 chr2R 10644058 10644087 chr2R 10644136 10644165 9 77 2.0 0.5 1.2 4.1 107 chr2R 10644058 intron Git - chr2R 10644112 intron Git - chr2R 10644165 intron Git - chr2R_9_10640001 chr2R_10640001 RAL-737 682 chr2R 10653203 10653237 chr2R 10653282 10653289 8 73 4.0 2.5 3.2 1.9 86 chr2R 10653203 intergenic not near genes chr2R 10653246 intergenic not near genes chr2R 10653289 intergenic not near genes chr2R_8_10650001 chr2R_10650001 RAL-737 683 chr2R 10673078 10673109 chr2R 10673164 10673182 17 79 3.0 3.0 3.0 4.2 104 chr2R 10673078 intergenic stan + chr2R 10673130 intergenic stan + chr2R 10673182 intergenic stan + chr2R_17_10670001 chr2R_10670001 RAL-737 684 chr2R 10675311 10675316 chr2R 10675393 10675398 4 82 0.0 0.0 0.0 4.0 87 chr2R 10675311 intron stan + chr2R 10675354 intron stan + chr2R 10675398 intron stan + chr2R_4_10675001 chr2R_10675001 RAL-737 685 chr2R 10758795 10758827 chr2R 10758889 10758926 9 95 3.5 3.5 3.5 2.0 131 chr2R 10758795 intron CG33144 - chr2R 10758860 intron CG33144 - chr2R 10758926 intron CG33144 - chr2R_9_10755001 chr2R_10755001 RAL-737 686 chr2R 10761558 10761590 chr2R 10761712 10761744 13 153 3.5 4.0 3.8 2.7 186 chr2R 10761558 intron,5` UTR CG33144 -,CR43605 + chr2R 10761651 intron,5` UTR CG33144 -,CR43605 + chr2R 10761744 intron CG33144 - chr2R_13_10760001 chr2R_10760001 RAL-737 687 chr2R 10790142 10790176 chr2R 10790230 10790244 14 83 5.0 5.0 5.0 2.3 102 chr2R 10790142 intron CG33144 - chr2R 10790193 intron CG33144 - chr2R 10790244 intron CG33144 - chr2R_14_10790001 chr2R_10790001 RAL-737 688 chr2R 10794915 10794943 chr2R 10794993 10795020 7 78 3.0 5.5 4.2 1.3 105 chr2R 10794915 intron CG33144 - chr2R 10794968 intron CG33144 - chr2R 10795020 intron CG33144 - chr2R_7_10790001 chr2R_10790001 RAL-737 689 chr2R 10796727 10796737 chr2R 10796805 10796820 4 88 2.0 2.0 2.0 1.3 93 chr2R 10796727 intron CG33144 - chr2R 10796774 intron CG33144 - chr2R 10796820 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-737 690 chr2R 10827340 10827344 chr2R 10827421 10827432 4 85 9.0 4.5 6.8 0.5 92 chr2R 10827340 exon CG12325 + chr2R 10827386 3` UTR CG12325 + chr2R 10827432 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_4_10825001 chr2R_10825001 RAL-737 691 chr2R 10827349 10827362 chr2R 10827420 10827449 10 79 3.0 3.5 3.2 2.4 100 chr2R 10827349 exon CG12325 + chr2R 10827399 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_10_10825001 chr2R_10825001 RAL-737 692 chr2R 10948037 10948060 chr2R 10955578 10955611 17.6 9 7539 2.5 4.0 3.2 2.1 7574 chr2R 10948037 intergenic not near genes chr2R 10951824 intergenic not near genes chr2R 10955611 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-737 693 chr2R 10968752 10968771 chr2R 10968832 10968851 5 78 5.5 5.0 5.2 0.8 99 chr2R 10968752 intergenic not near genes chr2R 10968802 intergenic not near genes chr2R 10968851 intergenic not near genes chr2R_5_10965001 chr2R_10965001 RAL-737 694 chr2R 10979663 10979684 chr2R 10980134 10980144 297 4 466 3.0 5.5 4.2 0.8 481 chr2R 10979663 intergenic not near genes chr2R 10979904 intergenic not near genes chr2R 10980144 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-737 695 chr2R 10985097 10985118 chr2R 10985181 10985199 9 83 4.0 6.0 5.0 1.5 102 chr2R 10985097 intron luna - chr2R 10985148 intron luna - chr2R 10985199 intron luna - chr2R_9_10985001 chr2R_10985001 RAL-737 696 chr2R 11009814 11009847 chr2R 11018986 11019021 roo 8 9159 3.5 5.0 4.2 1.5 9207 chr2R 11009814 intron luna - chr2R 11014418 intron luna - chr2R 11019021 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-737 697 chr2R 11019876 11019914 chr2R 11024942 11024966 jockey 4 5062 0.0 3.5 1.8 1.4 5090 chr2R 11019876 intron luna - chr2R 11022421 intron luna - chr2R 11024966 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-737 698 chr2R 11102864 11102898 chr2R 11102946 11102959 11 80 2.5 1.0 1.8 3.9 95 chr2R 11102864 intron luna - chr2R 11102912 intron luna - chr2R 11102959 intron luna - chr2R_11_11100001 chr2R_11100001 RAL-737 699 chr2R 11179269 11179292 chr2R 11179355 11179378 12 85 6.5 6.5 6.5 1.6 109 chr2R 11179269 intron shn + chr2R 11179324 intron shn + chr2R 11179378 intron shn + chr2R_12_11175001 chr2R_11175001 RAL-737 700 chr2R 11192105 11192118 chr2R 11192180 11192206 4 85 11.5 1.0 6.2 0.6 101 chr2R 11192105 intron shn + chr2R 11192156 intron shn + chr2R 11192206 intron shn + chr2R_4_11190001 chr2R_11190001 RAL-737 701 chr2R 11207820 11207850 chr2R 11208008 11208025 BS 9 186 9.0 5.0 7.0 1.1 205 chr2R 11207820 intron shn + chr2R 11207922 intron shn + chr2R 11208025 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-737 702 chr2R 11292973 11292997 chr2R 11293049 11293053 14 70 2.5 2.0 2.2 4.4 80 chr2R 11292973 exon,3` UTR dare -,CG30033 + chr2R 11293013 exon,3` UTR dare -,CG30033 + chr2R 11293053 5` UTR,3` UTR dare -,CG30033 + chr2R_14_11290001 chr2R_11290001 RAL-737 703 chr2R 11318014 11318024 chr2R 11318097 11318122 4 93 4.0 2.5 3.2 1.0 108 chr2R 11318014 intron nompA - chr2R 11318068 intron nompA - chr2R 11318122 intron nompA - chr2R_4_11315001 chr2R_11315001 RAL-737 704 chr2R 11344148 11344159 chr2R 11344244 11344255 5 96 0.0 6.5 3.2 1.2 107 chr2R 11344148 intergenic alphaTry - chr2R 11344202 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-737 705 chr2R 11415529 11415551 chr2R 11418668 11418681 opus 9 3136 4.5 7.0 5.8 1.3 3152 chr2R 11415529 intron Drip - chr2R 11417105 intron Drip - chr2R 11418681 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-737 706 chr2R 11472649 11472680 chr2R 11473846 11473851 pogo 14 1192 7.5 7.0 7.2 1.7 1202 chr2R 11472649 intergenic not near genes chr2R 11473250 intergenic not near genes chr2R 11473851 intergenic not near genes chr2R_14_11470001 chr2R_11470001 RAL-737 707 chr2R 11494311 11494603 chr2R 11494394 11494687 13 83 14.0 3.0 8.5 1.4 376 chr2R 11494311 intron inv + chr2R 11494499 intron inv + chr2R 11494687 intron inv + chr2R_13_11490001 chr2R_11490001 RAL-737 708 chr2R 11614624 11614800 chr2R 11614711 11614888 9 88 4.5 7.0 5.8 1.3 264 chr2R 11614624 intron tou - chr2R 11614756 intron tou - chr2R 11614888 intron tou - chr2R_9_11610001 chr2R_11610001 RAL-737 709 chr2R 11631399 11631410 chr2R 11631479 11631490 7 80 0.0 7.5 3.8 1.5 91 chr2R 11631399 intron CG9005 - chr2R 11631444 intron CG9005 - chr2R 11631490 intron CG9005 - chr2R_7_11630001 chr2R_11630001 RAL-737 710 chr2R 11636406 11636442 chr2R 11636484 11636490 6 61 2.5 2.5 2.5 1.7 84 chr2R 11636406 intron CG9005 - chr2R 11636448 intron CG9005 - chr2R 11636490 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-737 711 chr2R 11665832 11665839 chr2R 11665904 11665920 6 80 4.0 3.0 3.5 1.3 88 chr2R 11665832 intron,intron Roc2 -,Tret1-1 + chr2R 11665876 intron,intron Roc2 -,Tret1-1 + chr2R 11665920 intron,intron Roc2 -,Tret1-1 + chr2R_6_11665001 chr2R_11665001 RAL-737 712 chr2R 11760731 11760763 chr2R 11760862 11760894 12 126 4.0 7.5 5.8 1.8 163 chr2R 11760731 intron ths + chr2R 11760812 intron ths + chr2R 11760894 intron ths + chr2R_12_11760001 chr2R_11760001 RAL-737 713 chr2R 11826888 11826919 chr2R 11827000 11827031 4 110 5.0 4.0 4.5 0.7 143 chr2R 11826888 3` UTR CG13192 + chr2R 11826960 3` UTR CG13192 + chr2R 11827031 3` UTR CG13192 + chr2R_4_11825001 chr2R_11825001 RAL-737 714 chr2R 11828239 11828252 chr2R 11828291 11828300 6 64 3.0 0.5 1.8 2.1 61 chr2R 11828239 exon Sobp - chr2R 11828270 exon Sobp - chr2R 11828300 exon Sobp - chr2R_6_11825001 chr2R_11825001 RAL-737 715 chr2R 11848796 11848823 chr2R 11848873 11848900 5 77 3.0 2.0 2.5 1.4 104 chr2R 11848796 intron Sln + chr2R 11848848 intron Sln + chr2R 11848900 exon Sln + chr2R_5_11845001 chr2R_11845001 RAL-737 716 chr2R 11863857 11863887 chr2R 11863944 11863974 4 87 3.0 0.0 1.5 1.6 117 chr2R 11863857 intergenic CG42531 + chr2R 11863916 intergenic CG42531 + chr2R 11863974 intergenic CG42531 + chr2R_4_11860001 chr2R_11860001 RAL-737 717 chr2R 11928702 11928711 chr2R 11928774 11928789 5 77 0.0 4.5 2.2 1.6 87 chr2R 11928702 intergenic not near genes chr2R 11928746 intergenic CR44312 - chr2R 11928789 intergenic CR44312 - chr2R_5_11925001 chr2R_11925001 RAL-737 718 chr2R 11945490 11945518 chr2R 11945772 11945805 9 284 4.0 2.5 3.2 2.1 315 chr2R 11945490 intron CG13188 + chr2R 11945648 intron CG13188 + chr2R 11945805 intron CG13188 + chr2R_9_11945001 chr2R_11945001 RAL-737 719 chr2R 12044364 12044381 chr2R 12044439 12044465 6 83 3.5 5.0 4.2 1.2 101 chr2R 12044364 intergenic Drep-1 + chr2R 12044414 intergenic Drep-1 + chr2R 12044465 intergenic Drep-1 + chr2R_6_12040001 chr2R_12040001 RAL-737 720 chr2R 8518778 8518804 chr2R 12066191 12066199 4 3547404 26.0 10.5 18.2 0.2 3547421 chr2R 8518778 intron mtt - chr2R 10292488 intron CAP + chr2R 12066199 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-737 721 chr2R 12120421 12120435 chr2R 12120485 12120516 5 74 3.5 2.5 3.0 1.2 95 chr2R 12120421 intergenic not near genes chr2R 12120468 intergenic not near genes chr2R 12120516 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-737 722 chr2R 12186001 12186035 chr2R 12186096 12186130 22 93 5.0 9.0 7.0 2.8 129 chr2R 12186001 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_22_12185001 chr2R_12185001 RAL-737 723 chr2R 12187474 12187484 chr2R 12190099 12190106 5 2619 80.5 76.0 78.2 0.1 2632 chr2R 12187474 exon Cyp6g1 + chr2R 12188790 exon Cyp6g2 - chr2R 12190106 exon Cyp6g2 - chr2R_5_12185001 chr2R_12185001 RAL-737 724 chr2R 12187473 12187499 chr2R 12190108 12190115 4 2627 96.5 70.0 83.2 0.0 2642 chr2R 12187473 exon Cyp6g1 + chr2R 12188794 exon Cyp6g2 - chr2R 12190115 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-737 725 chr2R 12187472 12187473 chr2R 12190117 12190124 6 2633 57.0 66.0 61.5 0.1 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_6_12185001 chr2R_12185001 RAL-737 726 chr2R 12217594 12217603 chr2R 12217661 12217681 6 73 2.5 8.0 5.2 1.0 87 chr2R 12217594 intergenic not near genes chr2R 12217638 intergenic not near genes chr2R 12217681 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-737 727 chr2R 12228371 12228406 chr2R 12228490 12228518 5 118 1.5 1.0 1.2 2.3 147 chr2R 12228371 intron CG8854 - chr2R 12228444 intron CG8854 - chr2R 12228518 intron CG8854 - chr2R_5_12225001 chr2R_12225001 RAL-737 728 chr2R 12255721 12255751 chr2R 12255840 12255870 17 118 3.5 2.0 2.8 4.5 149 chr2R 12255721 intergenic CG13168 + chr2R 12255796 intergenic CG13168 + chr2R 12255870 intergenic CG13168 + chr2R_17_12255001 chr2R_12255001 RAL-737 729 chr2R 12334882 12334902 chr2R 12334960 12334964 9 76 5.0 4.0 4.5 1.6 82 chr2R 12334882 intergenic CG8490 + chr2R 12334923 intergenic CG8490 + chr2R 12334964 intergenic CG8490 + chr2R_9_12330001 chr2R_12330001 RAL-737 730 chr2R 12363384 12363414 chr2R 12363811 12363824 10 429 5.5 3.0 4.2 1.9 440 chr2R 12363384 intergenic CG30043 + chr2R 12363604 intergenic CG30043 + chr2R 12363824 intergenic not near genes chr2R_10_12360001 chr2R_12360001 RAL-737 731 chr2R 12385345 12385361 chr2R 12385426 12385442 10 80 2.5 3.0 2.8 2.6 97 chr2R 12385345 intergenic not near genes chr2R 12385394 intergenic not near genes chr2R 12385442 intergenic not near genes chr2R_10_12385001 chr2R_12385001 RAL-737 732 chr2R 12385365 12385379 chr2R 12385424 12385435 4 69 1.0 2.5 1.8 1.4 70 chr2R 12385365 intergenic not near genes chr2R 12385400 intergenic not near genes chr2R 12385435 intergenic not near genes chr2R_4_12385001 chr2R_12385001 RAL-737 733 chr2R 12481144 12481170 chr2R 12482947 12482968 roo 4 1801 2.5 4.5 3.5 0.9 1824 chr2R 12481144 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482968 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-737 734 chr2R 12501709 12501726 chr2R 12503850 12503887 Rt1c 4 2140 3.5 2.5 3.0 1.0 2178 chr2R 12501709 intron fdl - chr2R 12502798 intron fdl - chr2R 12503887 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-737 735 chr2R 12540478 12540496 chr2R 12540559 12540577 4 76 5.0 2.0 3.5 0.9 99 chr2R 12540478 intron fra + chr2R 12540528 intron fra + chr2R 12540577 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-737 736 chr2R 12565565 12565588 chr2R 12565943 12565944 9 375 0.5 5.5 3.0 2.2 379 chr2R 12565565 intergenic not near genes chr2R 12565754 intergenic Cyp301a1 + chr2R 12565944 intergenic Cyp301a1 + chr2R_9_12565001 chr2R_12565001 RAL-737 737 chr2R 12602815 12602836 chr2R 12602892 12602920 13 83 2.5 2.5 2.5 3.7 105 chr2R 12602815 intron Amph + chr2R 12602868 intron Amph + chr2R 12602920 intron Amph + chr2R_13_12600001 chr2R_12600001 RAL-737 738 chr2R 12707517 12707549 chr2R 12715883 12715915 roo 13 8366 2.5 5.0 3.8 2.7 8398 chr2R 12707517 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715915 intron CG42663 + chr2R_13_12710001 chr2R_12710001 RAL-737 739 chr2R 12725203 12725231 chr2R 12725456 12725484 9 252 6.0 1.5 3.8 1.9 281 chr2R 12725203 intron CG42663 + chr2R 12725344 intron CG42663 + chr2R 12725484 intron CG42663 + chr2R_9_12725001 chr2R_12725001 RAL-737 740 chr2R 12747967 12747993 chr2R 12748039 12748068 6 72 2.5 3.0 2.8 1.6 101 chr2R 12747967 intron CG42663 + chr2R 12748018 intron CG42663 + chr2R 12748068 intron CG42663 + chr2R_6_12745001 chr2R_12745001 RAL-737 741 chr2R 12748786 12748799 chr2R 12748874 12748887 4 88 4.5 4.5 4.5 0.7 101 chr2R 12748786 intron CG42663 + chr2R 12748836 intron CG42663 + chr2R 12748887 intron CG42663 + chr2R_4_12745001 chr2R_12745001 RAL-737 742 chr2R 12789296 12789307 chr2R 12797658 12797670 roo 4 8363 7.0 2.5 4.8 0.7 8374 chr2R 12789296 intron,3` UTR sca +,CR45137 - chr2R 12793483 intron,intron sca +,CR45137 - chr2R 12797670 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-737 743 chr2R 12808316 12808346 chr2R 12808411 12808440 11 93 4.5 5.0 4.8 1.9 124 chr2R 12808316 intergenic not near genes chr2R 12808378 intergenic not near genes chr2R 12808440 intergenic not near genes chr2R_11_12805001 chr2R_12805001 RAL-737 744 chr2R 12819452 12819466 chr2R 12824529 12824533 jockey 4 5074 6.5 6.0 6.2 0.6 5081 chr2R 12819452 intergenic not near genes chr2R 12821992 intergenic not near genes chr2R 12824533 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-737 745 chr2R 12845420 12845430 chr2R 12845501 12845501 4 78 5.5 0.5 3.0 1.0 81 chr2R 12845420 intergenic CG17575 - chr2R 12845460 intergenic CG17575 - chr2R 12845501 intergenic CG17575 - chr2R_4_12845001 chr2R_12845001 RAL-737 746 chr2R 12897459 12897486 chr2R 12897550 12897577 13 89 2.5 0.0 1.2 5.9 118 chr2R 12897459 intron vg + chr2R 12897518 intron vg + chr2R 12897577 intron vg + chr2R_13_12895001 chr2R_12895001 RAL-737 747 chr2R 13136841 13136862 chr2R 13141638 13141660 Doc 9 4798 5.0 6.0 5.5 1.4 4819 chr2R 13136841 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141660 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-737 748 chr2R 13136864 13136867 chr2R 13141634 13141659 Doc 6 4788 3.5 5.5 4.5 1.1 4795 chr2R 13136864 intron Cap-G + chr2R 13139262 intron Cap-G + chr2R 13141659 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-737 749 chr2R 13167408 13167432 chr2R 13167490 13167514 15 80 2.5 2.0 2.2 4.7 106 chr2R 13167408 intron GLaz - chr2R 13167461 intron GLaz - chr2R 13167514 intron GLaz - chr2R_15_13165001 chr2R_13165001 RAL-737 750 chr2R 13220538 13220549 chr2R 13220623 13220648 8 96 0.5 3.5 2.0 2.7 110 chr2R 13220538 intron CG17059 + chr2R 13220593 intron CG17059 + chr2R 13220648 intron CG17059 + chr2R_8_13220001 chr2R_13220001 RAL-737 751 chr2R 13261156 13261175 chr2R 13261251 13261270 8 94 3.0 9.5 6.2 1.1 114 chr2R 13261156 intron CG42319 + chr2R 13261213 intron CG42319 + chr2R 13261270 intron CG42319 + chr2R_8_13260001 chr2R_13260001 RAL-737 752 chr2R 13375624 13375630 chr2R 13375700 13375706 5 76 0.0 0.0 0.0 5.0 82 chr2R 13375624 intergenic CG10814 - chr2R 13375665 intergenic CG10814 - chr2R 13375706 intergenic CG10814 - chr2R_5_13375001 chr2R_13375001 RAL-737 753 chr2R 13431492 13431516 chr2R 13431570 13431595 17 78 4.5 1.0 2.8 4.5 103 chr2R 13431492 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431595 intron CG42321 - chr2R_17_13430001 chr2R_13430001 RAL-737 754 chr2R 13439112 13439123 chr2R 13439225 13439237 4 114 14.5 3.5 9.0 0.4 125 chr2R 13439112 intergenic CG42321 -,cnn - chr2R 13439174 intergenic CG42321 -,cnn - chr2R 13439237 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-737 755 chr2R 13531161 13531293 chr2R 13531249 13531403 6 99 0.0 0.5 0.2 5.0 242 chr2R 13531161 intron Vmat - chr2R 13531282 intron Vmat - chr2R 13531403 intron Vmat - chr2R_6_13530001 chr2R_13530001 RAL-737 756 chr2R 13580497 13580528 chr2R 13580847 13580878 jockey 8 348 2.0 2.5 2.2 2.5 381 chr2R 13580497 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580878 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-737 757 chr2R 13635696 13635714 chr2R 13635786 13635813 7 97 0.0 8.0 4.0 1.4 117 chr2R 13635696 intron fas + chr2R 13635754 intron fas + chr2R 13635813 intron fas + chr2R_7_13635001 chr2R_13635001 RAL-737 758 chr2R 13768981 13769009 chr2R 13769079 13769103 8 93 1.0 7.0 4.0 1.6 122 chr2R 13768981 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769103 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-737 759 chr2R 13888765 13888781 chr2R 13888842 13888857 4 77 13.5 0.0 6.8 0.5 92 chr2R 13888765 intron shot - chr2R 13888811 intron shot - chr2R 13888857 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-737 760 chr2R 13888782 13888792 chr2R 13888841 13888844 4 66 6.0 0.0 3.0 1.0 62 chr2R 13888782 intron shot - chr2R 13888813 intron shot - chr2R 13888844 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-737 761 chr2R 13925848 13925872 chr2R 13926023 13926048 11 173 5.0 3.0 4.0 2.2 200 chr2R 13925848 intron shot - chr2R 13925948 intron shot - chr2R 13926048 intron shot - chr2R_11_13925001 chr2R_13925001 RAL-737 762 chr2R 13979663 13979697 chr2R 13979774 13979808 14 106 4.5 4.5 4.5 2.5 145 chr2R 13979663 5` UTR CG6701 - chr2R 13979736 5` UTR CG6701 - chr2R 13979808 5` UTR CG6701 - chr2R_14_13975001 chr2R_13975001 RAL-737 763 chr2R 14037270 14037297 chr2R 14037353 14037380 5 83 0.0 6.0 3.0 1.2 110 chr2R 14037270 intron mam + chr2R 14037325 intron mam + chr2R 14037380 intron mam + chr2R_5_14035001 chr2R_14035001 RAL-737 764 chr2R 14093434 14093442 chr2R 14109585 14109593 4 16151 7.0 1.0 4.0 0.8 16159 chr2R 14093434 intron Prosap - chr2R 14101514 intron Prosap - chr2R 14109593 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-737 765 chr2R 14277577 14277610 chr2R 14277659 14277692 8 80 10.5 8.0 9.2 0.8 115 chr2R 14277577 5` UTR Ih + chr2R 14277634 5` UTR Ih + chr2R 14277692 5` UTR Ih + chr2R_8_14275001 chr2R_14275001 RAL-737 766 chr2R 14294829 14294861 chr2R 14294909 14294941 20 79 6.0 7.5 6.8 2.6 112 chr2R 14294829 intron Ih + chr2R 14294885 intron Ih + chr2R 14294941 intron Ih + chr2R_20_14290001 chr2R_14290001 RAL-737 767 chr2R 14357557 14357577 chr2R 14357645 14357667 9 89 2.0 2.0 2.0 3.0 110 chr2R 14357557 intergenic CG8617 -,Arc1 - chr2R 14357612 intergenic Arc1 -,CG8617 - chr2R 14357667 intergenic Arc1 -,CG8617 - chr2R_9_14355001 chr2R_14355001 RAL-737 768 chr2R 14386433 14386453 chr2R 14386520 14386540 9 84 7.5 6.5 7.0 1.1 107 chr2R 14386433 intergenic not near genes chr2R 14386486 intergenic not near genes chr2R 14386540 intergenic not near genes chr2R_9_14385001 chr2R_14385001 RAL-737 769 chr2R 14386455 14386467 chr2R 14386519 14386553 10 79 4.0 6.5 5.2 1.6 98 chr2R 14386455 intergenic not near genes chr2R 14386504 intergenic not near genes chr2R 14386553 intergenic not near genes chr2R_10_14385001 chr2R_14385001 RAL-737 770 chr2R 14394231 14394254 chr2R 14399020 14399020 Doc 8 4786 10.0 5.0 7.5 0.9 4789 chr2R 14394231 intergenic not near genes chr2R 14396626 intergenic not near genes chr2R 14399020 intergenic not near genes chr2R_8_14395001 chr2R_14395001 RAL-737 771 chr2R 14400522 14400553 chr2R 14400600 14400632 13 76 2.5 5.0 3.8 2.7 110 chr2R 14400522 intergenic not near genes chr2R 14400577 intergenic not near genes chr2R 14400632 intergenic not near genes chr2R_13_14400001 chr2R_14400001 RAL-737 772 chr2R 14467293 14467322 chr2R 14476445 14476474 roo 10 9150 3.5 8.0 5.8 1.5 9181 chr2R 14467293 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476474 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-737 773 chr2R 14538538 14538554 chr2R 14538650 14538666 4 111 3.0 1.5 2.2 1.2 128 chr2R 14538538 intron ttv + chr2R 14538602 intron ttv + chr2R 14538666 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-737 774 chr2R 14565556 14565591 chr2R 14565633 14565663 14 74 6.0 2.5 4.2 2.7 107 chr2R 14565556 intron ttv + chr2R 14565610 intron ttv + chr2R 14565663 intron ttv + chr2R_14_14565001 chr2R_14565001 RAL-737 775 chr2R 14623885 14623893 chr2R 14623973 14623988 4 94 0.5 3.5 2.0 1.3 103 chr2R 14623885 intron Uhg5 + chr2R 14623936 5` UTR Uhg5 + chr2R 14623988 intron Uhg5 + chr2R_4_14620001 chr2R_14620001 RAL-737 776 chr2R 14653911 14653928 chr2R 14654002 14654028 12 96 5.0 9.5 7.2 1.5 117 chr2R 14653911 intergenic not near genes chr2R 14653970 intergenic not near genes chr2R 14654028 intergenic not near genes chr2R_12_14650001 chr2R_14650001 RAL-737 777 chr2R 14674160 14674179 chr2R 14674235 14674255 7 73 4.5 4.5 4.5 1.3 95 chr2R 14674160 intron mspo - chr2R 14674208 intron mspo - chr2R 14674255 intron mspo - chr2R_7_14670001 chr2R_14670001 RAL-737 778 chr2R 14729972 14729992 chr2R 14730041 14730071 10 78 3.5 3.5 3.5 2.2 99 chr2R 14729972 intergenic not near genes chr2R 14730022 intergenic not near genes chr2R 14730071 intergenic not near genes chr2R_10_14730001 chr2R_14730001 RAL-737 779 chr2R 14790188 14790208 chr2R 14790269 14790289 9 81 4.0 1.5 2.8 2.4 101 chr2R 14790188 intron kn - chr2R 14790238 intron kn - chr2R 14790289 intron kn - chr2R_9_14790001 chr2R_14790001 RAL-737 780 chr2R 14796349 14796359 chr2R 14796446 14796455 7 97 3.0 6.5 4.8 1.2 106 chr2R 14796349 intron kn - chr2R 14796402 intron kn - chr2R 14796455 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-737 781 chr2R 14805696 14805716 chr2R 14805775 14805795 7 79 4.5 0.0 2.2 2.2 99 chr2R 14805696 intron kn - chr2R 14805746 intron kn - chr2R 14805795 intron kn - chr2R_7_14805001 chr2R_14805001 RAL-737 782 chr2R 14889209 14889240 chr2R 14897817 14897844 Max-element 8 8607 7.0 0.0 3.5 1.8 8635 chr2R 14889209 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_8_14890001 chr2R_14890001 RAL-737 783 chr2R 14911700 14911725 chr2R 14911823 14911848 13 123 4.0 4.0 4.0 2.6 148 chr2R 14911700 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_13_14910001 chr2R_14910001 RAL-737 784 chr2R 14922154 14922174 chr2R 14922217 14922250 16 72 8.5 3.0 5.8 2.4 96 chr2R 14922154 intron CG10249 - chr2R 14922202 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_16_14920001 chr2R_14920001 RAL-737 785 chr2R 14979770 14979794 chr2R 14979840 14979870 13 73 2.5 9.0 5.8 1.9 100 chr2R 14979770 3` UTR ckn + chr2R 14979820 3` UTR ckn + chr2R 14979870 3` UTR ckn + chr2R_13_14975001 chr2R_14975001 RAL-737 786 chr2R 15004727 15004758 chr2R 15005054 15005087 jockey 17 328 8.5 7.0 7.8 1.9 360 chr2R 15004727 intergenic not near genes chr2R 15004907 intergenic not near genes chr2R 15005087 intergenic not near genes chr2R_17_15000001 chr2R_15000001 RAL-737 787 chr2R 15015468 15015489 chr2R 15022879 15022884 mdg1 11 7417 4.0 5.0 4.5 2.0 7416 chr2R 15015468 intron hbs + chr2R 15019176 intron hbs + chr2R 15022884 intron hbs + chr2R_11_15015001 chr2R_15015001 RAL-737 788 chr2R 15084980 15085001 chr2R 15092029 15092050 297 10 7049 5.0 4.0 4.5 1.8 7070 chr2R 15084980 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_10_15085001 chr2R_15085001 RAL-737 789 chr2R 15094886 15094917 chr2R 15094963 15094994 14 77 4.5 3.0 3.8 2.9 108 chr2R 15094886 intergenic not near genes chr2R 15094940 intergenic not near genes chr2R 15094994 intergenic not near genes chr2R_14_15090001 chr2R_15090001 RAL-737 790 chr2R 15119317 15119351 chr2R 15127798 15127817 Tirant 13 8474 4.5 4.5 4.5 2.4 8500 chr2R 15119317 intron chn + chr2R 15123567 intron chn + chr2R 15127817 intron chn + chr2R_13_15120001 chr2R_15120001 RAL-737 791 chr2R 15157082 15157114 chr2R 15157172 15157204 10 90 1.0 1.0 1.0 5.0 122 chr2R 15157082 intron igl + chr2R 15157143 intron igl + chr2R 15157204 intron igl + chr2R_10_15155001 chr2R_15155001 RAL-737 792 chr2R 15333926 15333935 chr2R 15334089 15334096 6 162 5.5 3.0 4.2 1.2 170 chr2R 15333926 exon Hr51 + chr2R 15334011 intron Hr51 + chr2R 15334096 intron Hr51 + chr2R_6_15330001 chr2R_15330001 RAL-737 793 chr2R 15355429 15355456 chr2R 15355512 15355538 12 79 5.0 6.0 5.5 1.8 109 chr2R 15355429 intron unc-5 + chr2R 15355484 intron unc-5 + chr2R 15355538 intron unc-5 + chr2R_12_15355001 chr2R_15355001 RAL-737 794 chr2R 15375350 15375362 chr2R 15376167 15376179 7 816 3.0 2.0 2.5 2.0 829 chr2R 15375350 intergenic not near genes chr2R 15375764 intergenic not near genes chr2R 15376179 intergenic dup - chr2R_7_15375001 chr2R_15375001 RAL-737 795 chr2R 15655987 15656000 chr2R 15656061 15656080 6 78 4.5 9.5 7.0 0.8 93 chr2R 15655987 intron CG42524 + chr2R 15656034 intron CG42524 + chr2R 15656080 intron CG42524 + chr2R_6_15655001 chr2R_15655001 RAL-737 796 chr2R 15656003 15656014 chr2R 15656060 15656073 5 71 1.5 9.0 5.2 0.8 70 chr2R 15656003 intron CG42524 + chr2R 15656038 intron CG42524 + chr2R 15656073 intron CG42524 + chr2R_5_15655001 chr2R_15655001 RAL-737 797 chr2R 15700239 15700243 chr2R 15700354 15700358 4 115 9.0 6.5 7.8 0.5 119 chr2R 15700239 intron,5` UTR CG30080 -,CG42662 - chr2R 15700298 intron,5` UTR CG30080 -,CG42662 - chr2R 15700358 intron,5` UTR CG30080 -,CG42662 - chr2R_4_15700001 chr2R_15700001 RAL-737 798 chr2R 15700244 15700272 chr2R 15700350 15700363 16 107 6.0 5.5 5.8 2.4 119 chr2R 15700244 intron,5` UTR CG30080 -,CG42662 - chr2R 15700304 intron,5` UTR CG30080 -,CG42662 - chr2R 15700363 intron,5` UTR CG30080 -,CG42662 - chr2R_16_15700001 chr2R_15700001 RAL-737 799 chr2R 15833521 15833560 chr2R 15833608 15833613 6 74 1.5 5.0 3.2 1.4 92 chr2R 15833521 intron,intron tun +,Poxn - chr2R 15833567 intron,intron tun +,Poxn - chr2R 15833613 intron,intron tun +,Poxn - chr2R_6_15830001 chr2R_15830001 RAL-737 800 chr2R 15877972 15877998 chr2R 15878050 15878082 14 83 3.5 5.5 4.5 2.5 110 chr2R 15877972 intron sli - chr2R 15878027 intron sli - chr2R 15878082 intron sli - chr2R_14_15875001 chr2R_15875001 RAL-737 801 chr2R 15891828 15891836 chr2R 15891904 15891912 6 76 1.0 8.5 4.8 1.0 84 chr2R 15891828 intron sli - chr2R 15891870 intron sli - chr2R 15891912 intron sli - chr2R_6_15890001 chr2R_15890001 RAL-737 802 chr2R 15930383 15930387 chr2R 15930460 15930464 4 77 7.5 0.0 3.8 0.8 81 chr2R 15930383 intron bdg - chr2R 15930424 intron bdg - chr2R 15930464 intron bdg - chr2R_4_15930001 chr2R_15930001 RAL-737 803 chr2R 15998792 15998825 chr2R 15998892 15998941 8 96 6.5 0.5 3.5 1.8 149 chr2R 15998792 intron ATPCL - chr2R 15998866 intron ATPCL - chr2R 15998941 intron ATPCL - chr2R_8_15995001 chr2R_15995001 RAL-737 804 chr2R 16245632 16245660 chr2R 16245720 16245729 15 86 7.0 2.5 4.8 2.6 97 chr2R 16245632 intron CngA - chr2R 16245680 intron CngA - chr2R 16245729 intron CngA - chr2R_15_16245001 chr2R_16245001 RAL-737 805 chr2R 16518055 16518067 chr2R 16518129 16518142 6 72 4.0 6.5 5.2 1.0 87 chr2R 16518055 intron Sema-2a + chr2R 16518098 intron Sema-2a + chr2R 16518142 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-737 806 chr2R 16539637 16539670 chr2R 16544846 16544879 copia 18 5205 6.0 2.0 4.0 3.6 5242 chr2R 16539637 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544879 intergenic not near genes chr2R_18_16540001 chr2R_16540001 RAL-737 807 chr2R 16617057 16617089 chr2R 16617136 16617168 13 77 4.5 2.5 3.5 2.9 111 chr2R 16617057 intron CG5065 + chr2R 16617112 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_13_16615001 chr2R_16615001 RAL-737 808 chr2R 16636904 16636933 chr2R 16637035 16637064 12 130 7.5 5.0 6.2 1.7 160 chr2R 16636904 intron Alk - chr2R 16636984 intron Alk - chr2R 16637064 intron Alk - chr2R_12_16635001 chr2R_16635001 RAL-737 809 chr2R 16701995 16702027 chr2R 16702082 16702114 6 83 3.5 2.5 3.0 1.5 119 chr2R 16701995 intron CG30463 - chr2R 16702054 intron CG30463 - chr2R 16702114 intron CG30463 - chr2R_6_16700001 chr2R_16700001 RAL-737 810 chr2R 16732625 16732631 chr2R 16732712 16732718 4 86 7.5 8.5 8.0 0.4 93 chr2R 16732625 5` UTR CG30463 - chr2R 16732672 5` UTR CG30463 - chr2R 16732718 5` UTR CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-737 811 chr2R 16732632 16732653 chr2R 16732707 16732708 11 75 4.0 7.5 5.8 1.6 76 chr2R 16732632 5` UTR CG30463 - chr2R 16732670 5` UTR CG30463 - chr2R 16732708 5` UTR CG30463 - chr2R_11_16730001 chr2R_16730001 RAL-737 812 chr2R 16775656 16775670 chr2R 16775923 16775936 6 267 3.5 9.0 6.2 0.8 280 chr2R 16775656 3` UTR Arp53D + chr2R 16775796 intergenic Arp53D + chr2R 16775936 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-737 813 chr2R 16847057 16847076 chr2R 16847187 16847206 9 130 4.5 6.5 5.5 1.4 149 chr2R 16847057 intergenic not near genes chr2R 16847132 intergenic not near genes chr2R 16847206 intergenic not near genes chr2R_9_16845001 chr2R_16845001 RAL-737 814 chr2R 16921291 16921325 chr2R 16921368 16921394 4 71 3.5 6.5 5.0 0.7 103 chr2R 16921291 intergenic not near genes chr2R 16921342 intergenic not near genes chr2R 16921394 intergenic not near genes chr2R_4_16920001 chr2R_16920001 RAL-737 815 chr2R 16993524 16993560 chr2R 16993613 16993644 11 89 5.5 7.5 6.5 1.5 120 chr2R 16993524 intron Cbp53E + chr2R 16993584 intron Cbp53E + chr2R 16993644 intron Cbp53E + chr2R_11_16990001 chr2R_16990001 RAL-737 816 chr2R 17132857 17132868 chr2R 17132957 17132968 4 100 1.0 4.5 2.8 1.1 111 chr2R 17132857 intergenic not near genes chr2R 17132912 intergenic not near genes chr2R 17132968 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 RAL-737 817 chr2R 17147246 17147261 chr2R 17152277 17152292 jockey 7 5031 6.5 11.5 9.0 0.7 5046 chr2R 17147246 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152292 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-737 818 chr2R 17176353 17176385 chr2R 17182542 17182567 diver 17 6188 7.0 5.0 6.0 2.4 6214 chr2R 17176353 intergenic not near genes chr2R 17179460 intergenic not near genes chr2R 17182567 intergenic not near genes chr2R_17_17175001 chr2R_17175001 RAL-737 819 chr2R 17236506 17236542 chr2R 17241710 17241716 copia 7 5196 3.5 6.0 4.8 1.2 5210 chr2R 17236506 intron mbl + chr2R 17239111 intron mbl + chr2R 17241716 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-737 820 chr2R 17395280 17395318 chr2R 17395358 17395371 12 72 3.0 4.5 3.8 2.5 91 chr2R 17395280 intron Sip1 + chr2R 17395326 intron Sip1 + chr2R 17395371 intron Sip1 + chr2R_12_17395001 chr2R_17395001 RAL-737 821 chr2R 17404757 17404763 chr2R 17404841 17404848 8 84 8.5 4.5 6.5 1.1 91 chr2R 17404757 exon Sip1 + chr2R 17404802 3` UTR Sip1 + chr2R 17404848 3` UTR Sip1 + chr2R_8_17400001 chr2R_17400001 RAL-737 822 chr2R 17404768 17404781 chr2R 17404840 17404866 6 81 3.5 4.0 3.8 1.2 98 chr2R 17404768 exon Sip1 + chr2R 17404817 3` UTR Sip1 + chr2R 17404866 3` UTR Sip1 + chr2R_6_17400001 chr2R_17400001 RAL-737 823 chr2R 17412366 17412377 chr2R 17412475 17412486 4 109 7.5 3.5 5.5 0.6 120 chr2R 17412366 intergenic Prosalpha5 + chr2R 17412426 intergenic Prosalpha5 + chr2R 17412486 intergenic Prosalpha5 + chr2R_4_17410001 chr2R_17410001 RAL-737 824 chr2R 17412384 17412392 chr2R 17412470 17412501 5 103 5.0 2.0 3.5 1.1 117 chr2R 17412384 intergenic Prosalpha5 + chr2R 17412442 intergenic Prosalpha5 + chr2R 17412501 intergenic Prosalpha5 + chr2R_5_17410001 chr2R_17410001 RAL-737 825 chr2R 17443778 17443802 chr2R 17443854 17443858 10 74 1.0 5.5 3.2 2.4 80 chr2R 17443778 intron EDTP - chr2R 17443818 intron EDTP - chr2R 17443858 intron EDTP - chr2R_10_17440001 chr2R_17440001 RAL-737 826 chr2R 17459007 17459038 chr2R 17459090 17459099 15 83 4.5 4.5 4.5 2.7 92 chr2R 17459007 intron CG14478 + chr2R 17459053 intron CG14478 + chr2R 17459099 intron CG14478 + chr2R_15_17455001 chr2R_17455001 RAL-737 827 chr2R 17470331 17470354 chr2R 17470411 17470429 10 78 2.0 2.0 2.0 3.3 98 chr2R 17470331 intron qkr54B + chr2R 17470380 intron qkr54B + chr2R 17470429 intron qkr54B + chr2R_10_17470001 chr2R_17470001 RAL-737 828 chr2R 17478846 17478856 chr2R 17478924 17478926 5 74 6.5 10.0 8.2 0.5 80 chr2R 17478846 3` UTR,intron CG43110 -,veil + chr2R 17478886 3` UTR,intron CG43110 -,veil + chr2R 17478926 3` UTR,intron CG43110 -,veil + chr2R_5_17475001 chr2R_17475001 RAL-737 829 chr2R 17485918 17485933 chr2R 17490687 17490693 F-element 7 4767 7.0 3.0 5.0 1.2 4775 chr2R 17485918 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488306 intron NT5E-2 + chr2R 17490693 intron NT5E-2 + chr2R_7_17485001 chr2R_17485001 RAL-737 830 chr2R 17640852 17640870 chr2R 17641399 17641416 5 547 6.5 6.0 6.2 0.7 564 chr2R 17640852 intergenic not near genes chr2R 17641134 intergenic not near genes chr2R 17641416 intergenic not near genes chr2R_5_17640001 chr2R_17640001 RAL-737 831 chr2R 17730654 17730668 chr2R 17730731 17730745 9 78 2.0 2.5 2.2 2.8 91 chr2R 17730654 intron,intron CG4975 +,CG4984 + chr2R 17730700 intron,intron CG4975 +,CG4984 + chr2R 17730745 intron,intron CG4975 +,CG4984 + chr2R_9_17730001 chr2R_17730001 RAL-737 832 chr2R 17782365 17782393 chr2R 17783568 17783596 pogo 10 1202 1.5 2.5 2.0 3.3 1231 chr2R 17782365 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783596 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-737 833 chr2R 17784026 17784056 chr2R 17784265 17784292 pogo 10 238 1.0 5.0 3.0 2.5 266 chr2R 17784026 intergenic mir-31a - chr2R 17784159 intergenic mir-31a - chr2R 17784292 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-737 834 chr2R 17886629 17886657 chr2R 17886711 17886736 7 78 2.0 4.0 3.0 1.8 107 chr2R 17886629 intron Elk + chr2R 17886682 intron Elk + chr2R 17886736 intron Elk + chr2R_7_17885001 chr2R_17885001 RAL-737 835 chr2R 18045672 18045701 chr2R 18046024 18046053 jockey 6 351 2.5 2.0 2.2 1.9 381 chr2R 18045672 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046053 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-737 836 chr2R 18111691 18111715 chr2R 18115559 18115583 F-element 11 3868 3.0 8.0 5.5 1.7 3892 chr2R 18111691 intergenic not near genes chr2R 18113637 intergenic not near genes chr2R 18115583 intergenic not near genes chr2R_11_18110001 chr2R_18110001 RAL-737 837 chr2R 18124343 18124373 chr2R 18124420 18124450 11 75 5.0 8.5 6.8 1.4 107 chr2R 18124343 intron stau - chr2R 18124396 intron stau - chr2R 18124450 intron stau - chr2R_11_18120001 chr2R_18120001 RAL-737 838 chr2R 18142918 18142921 chr2R 18143066 18143081 4 156 41.5 36.5 39.0 0.1 163 chr2R 18142918 intron,5` UTR pAbp +,snoRNA:Psi18S-1347a + chr2R 18143000 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R 18143081 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R_4_18140001 chr2R_18140001 RAL-737 839 chr2R 18308306 18308319 chr2R 18308388 18308424 6 102 5.5 3.5 4.5 1.1 118 chr2R 18308306 intron sbb - chr2R 18308365 intron sbb - chr2R 18308424 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-737 840 chr2R 18358404 18358423 chr2R 18372597 18372600 roo 13 14204 5.0 5.5 5.2 2.1 14196 chr2R 18358404 intergenic not near genes chr2R 18365502 intergenic not near genes chr2R 18372600 intergenic not near genes chr2R_13_18365001 chr2R_18365001 RAL-737 841 chr2R 18408281 18408302 chr2R 18408402 18408422 9 119 5.0 5.0 5.0 1.5 141 chr2R 18408281 exon GstE8 + chr2R 18408352 exon GstE8 + chr2R 18408422 exon GstE8 + chr2R_9_18405001 chr2R_18405001 RAL-737 842 chr2R 18408303 18408311 chr2R 18408401 18408432 7 111 2.5 5.0 3.8 1.5 129 chr2R 18408303 exon GstE8 + chr2R 18408368 exon GstE8 + chr2R 18408432 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-737 843 chr2R 18409012 18409024 chr2R 18409089 18409106 6 79 0.0 3.0 1.5 2.4 94 chr2R 18409012 intergenic GstE9 +,GstE8 + chr2R 18409059 5` UTR GstE9 + chr2R 18409106 exon GstE9 + chr2R_6_18405001 chr2R_18405001 RAL-737 844 chr2R 18420592 18420626 chr2R 18420668 18420690 14 74 1.5 2.5 2.0 4.7 98 chr2R 18420592 3` UTR Dp1 + chr2R 18420641 3` UTR Dp1 + chr2R 18420690 3` UTR Dp1 + chr2R_14_18420001 chr2R_18420001 RAL-737 845 chr2R 18575802 18575831 chr2R 18581985 18582019 3S18 7 6183 2.5 4.0 3.2 1.7 6217 chr2R 18575802 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-737 846 chr2R 18590871 18590900 chr2R 18600021 18600041 roo 6 9146 3.0 3.0 3.0 1.5 9170 chr2R 18590871 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600041 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-737 847 chr2R 18601131 18601161 chr2R 18601208 18601213 9 73 5.0 3.5 4.2 1.7 82 chr2R 18601131 intron GEFmeso - chr2R 18601172 intron GEFmeso - chr2R 18601213 intron GEFmeso - chr2R_9_18600001 chr2R_18600001 RAL-737 848 chr2R 18646411 18646436 chr2R 18646556 18646574 8 143 3.0 5.0 4.0 1.6 163 chr2R 18646411 intron SP2637 - chr2R 18646492 intron SP2637 - chr2R 18646574 intron SP2637 - chr2R_8_18645001 chr2R_18645001 RAL-737 849 chr2R 18652336 18652370 chr2R 18652417 18652451 16 81 0.0 0.0 0.0 16.0 115 chr2R 18652336 intron SP2637 - chr2R 18652394 intron SP2637 - chr2R 18652451 intron SP2637 - chr2R_16_18650001 chr2R_18650001 RAL-737 850 chr2R 18686914 18686934 chr2R 18687180 18687200 6 266 0.0 3.5 1.8 2.1 286 chr2R 18686914 intergenic CG44433 -,CG42855 + chr2R 18687057 intergenic CG44433 -,CG42855 + chr2R 18687200 intergenic CG42855 +,CG44433 - chr2R_6_18685001 chr2R_18685001 RAL-737 851 chr2R 18808156 18808186 chr2R 18808232 18808239 7 70 2.5 2.5 2.5 2.0 83 chr2R 18808156 intergenic CG15096 - chr2R 18808198 intergenic CG15096 - chr2R 18808239 intergenic CG15096 - chr2R_7_18805001 chr2R_18805001 RAL-737 852 chr2R 18926505 18926527 chr2R 18926592 18926592 9 83 3.0 2.0 2.5 2.6 87 chr2R 18926505 intron sano + chr2R 18926548 intron sano + chr2R 18926592 intron sano + chr2R_9_18925001 chr2R_18925001 RAL-737 853 chr2R 18930453 18930483 chr2R 18930546 18930573 11 93 1.5 2.5 2.0 3.7 120 chr2R 18930453 intron sano + chr2R 18930513 intron sano + chr2R 18930573 intron sano + chr2R_11_18930001 chr2R_18930001 RAL-737 854 chr2R 18964924 18964949 chr2R 18965000 18965025 10 75 7.0 10.5 8.8 1.0 101 chr2R 18964924 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965025 intergenic not near genes chr2R_10_18960001 chr2R_18960001 RAL-737 855 chr2R 18992018 18992050 chr2R 18992159 18992190 8 139 4.5 8.0 6.2 1.1 172 chr2R 18992018 intron tn + chr2R 18992104 intron tn + chr2R 18992190 intron tn + chr2R_8_18990001 chr2R_18990001 RAL-737 856 chr2R 19012941 19012966 chr2R 19013030 19013039 7 90 5.0 5.5 5.2 1.1 98 chr2R 19012941 intergenic not near genes chr2R 19012990 intergenic not near genes chr2R 19013039 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-737 857 chr2R 19067734 19067755 chr2R 19067810 19067831 5 76 4.5 2.5 3.5 1.1 97 chr2R 19067734 intron 5-HT1A + chr2R 19067782 intron 5-HT1A + chr2R 19067831 intron 5-HT1A + chr2R_5_19065001 chr2R_19065001 RAL-737 858 chr2R 19300960 19300993 chr2R 19301043 19301074 18 78 1.5 3.5 2.5 5.1 114 chr2R 19300960 intron Tab2 + chr2R 19301017 intron Tab2 + chr2R 19301074 intron Tab2 + chr2R_18_19300001 chr2R_19300001 RAL-737 859 chr2R 19351706 19351724 chr2R 19352539 19352557 5 833 6.0 3.5 4.8 0.9 851 chr2R 19351706 intron Rgk1 - chr2R 19352132 intron Rgk1 - chr2R 19352557 intron Rgk1 - chr2R_5_19350001 chr2R_19350001 RAL-737 860 chr2R 19363197 19363199 chr2R 19363273 19363275 5 76 0.0 0.0 0.0 5.0 78 chr2R 19363197 intergenic CG10051 + chr2R 19363236 intergenic CG10051 + chr2R 19363275 intergenic CG10051 + chr2R_5_19360001 chr2R_19360001 RAL-737 861 chr2R 19380075 19380104 chr2R 19380284 19380313 14 209 5.0 6.5 5.8 2.1 238 chr2R 19380075 3` UTR CG10062 + chr2R 19380194 intergenic CG10062 +,CG10073 + chr2R 19380313 intergenic CG10062 +,CG10073 + chr2R_14_19380001 chr2R_19380001 RAL-737 862 chr2R 19385110 19385136 chr2R 19385653 19385675 7 541 0.0 0.5 0.2 5.8 565 chr2R 19385110 intergenic CG10073 + chr2R 19385392 intergenic CG10073 + chr2R 19385675 intergenic CG10081 + chr2R_7_19385001 chr2R_19385001 RAL-737 863 chr2R 19554490 19554516 chr2R 19555726 19555732 7 1236 1.0 2.0 1.5 2.8 1242 chr2R 19554490 intron sm - chr2R 19555111 intron sm - chr2R 19555732 intron sm - chr2R_7_19555001 chr2R_19555001 RAL-737 864 chr2R 19637521 19637542 chr2R 19637695 19637717 9 174 7.0 2.5 4.8 1.6 196 chr2R 19637521 5` UTR mir-4983 + chr2R 19637619 intron CG43277 + chr2R 19637717 exon CG43277 + chr2R_9_19635001 chr2R_19635001 RAL-737 865 chr2R 19637544 19637550 chr2R 19637694 19637725 5 167 5.0 2.5 3.8 1.0 181 chr2R 19637544 intergenic CG43277 +,mir-4983 +,CG18367 + chr2R 19637634 intron CG43277 + chr2R 19637725 exon CG43277 + chr2R_5_19635001 chr2R_19635001 RAL-737 866 chr2R 19776598 19776630 chr2R 19779918 19779953 jockey 13 3320 3.0 6.5 4.8 2.2 3355 chr2R 19776598 intergenic not near genes chr2R 19778276 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_13_19775001 chr2R_19775001 RAL-737 867 chr2R 19807674 19807688 chr2R 19807756 19807770 15 81 6.5 4.0 5.2 2.4 96 chr2R 19807674 intergenic not near genes chr2R 19807722 intergenic not near genes chr2R 19807770 intergenic not near genes chr2R_15_19805001 chr2R_19805001 RAL-737 868 chr2R 19807689 19807697 chr2R 19807754 19807779 5 78 5.5 4.0 4.8 0.9 90 chr2R 19807689 intergenic not near genes chr2R 19807734 intergenic not near genes chr2R 19807779 intergenic not near genes chr2R_5_19805001 chr2R_19805001 RAL-737 869 chr2R 19847369 19847390 chr2R 19847463 19847484 7 94 5.5 5.5 5.5 1.1 115 chr2R 19847369 intergenic not near genes chr2R 19847426 intergenic not near genes chr2R 19847484 intergenic not near genes chr2R_7_19845001 chr2R_19845001 RAL-737 870 chr2R 19847391 19847395 chr2R 19847460 19847466 6 83 4.0 5.0 4.5 1.1 75 chr2R 19847391 intergenic not near genes chr2R 19847428 intergenic not near genes chr2R 19847466 intergenic not near genes chr2R_6_19845001 chr2R_19845001 RAL-737 871 chr2R 19914844 19914862 chr2R 19922255 19922274 mdg1 14 7411 10.0 4.0 7.0 1.8 7430 chr2R 19914844 intergenic not near genes chr2R 19918559 intergenic not near genes chr2R 19922274 intergenic not near genes chr2R_14_19915001 chr2R_19915001 RAL-737 872 chr2R 19943266 19943290 chr2R 19943376 19943400 8 110 2.5 1.5 2.0 2.7 134 chr2R 19943266 intergenic not near genes chr2R 19943333 intergenic not near genes chr2R 19943400 intergenic not near genes chr2R_8_19940001 chr2R_19940001 RAL-737 873 chr2R 20063076 20063100 chr2R 20063154 20063178 4 80 3.0 8.5 5.8 0.6 102 chr2R 20063076 intergenic not near genes chr2R 20063127 intergenic not near genes chr2R 20063178 intergenic not near genes chr2R_4_20060001 chr2R_20060001 RAL-737 874 chr2R 20079840 20079869 chr2R 20079916 20079946 4 78 0.0 4.0 2.0 1.3 106 chr2R 20079840 intergenic not near genes chr2R 20079893 intergenic not near genes chr2R 20079946 intergenic not near genes chr2R_4_20075001 chr2R_20075001 RAL-737 875 chr2R 20118876 20118902 chr2R 20118964 20118964 4 74 2.5 3.5 3.0 1.0 88 chr2R 20118876 intergenic not near genes chr2R 20118920 intergenic not near genes chr2R 20118964 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-737 876 chr2R 20121437 20121460 chr2R 20121938 20121960 12 500 4.5 0.0 2.2 3.8 523 chr2R 20121437 intergenic not near genes chr2R 20121698 intergenic not near genes chr2R 20121960 intergenic not near genes chr2R_12_20120001 chr2R_20120001 RAL-737 877 chr2R 20125733 20125746 chr2R 20125809 20125822 5 76 4.0 7.0 5.5 0.8 89 chr2R 20125733 intergenic not near genes chr2R 20125778 intergenic not near genes chr2R 20125822 intergenic not near genes chr2R_5_20125001 chr2R_20125001 RAL-737 878 chr2R 20125986 20126008 chr2R 20126424 20126426 9 434 3.5 2.5 3.0 2.2 440 chr2R 20125986 intergenic not near genes chr2R 20126206 intergenic not near genes chr2R 20126426 intergenic not near genes chr2R_9_20125001 chr2R_20125001 RAL-737 879 chr2R 20126009 20126014 chr2R 20126420 20126451 4 421 2.0 2.5 2.2 1.2 442 chr2R 20126009 intergenic not near genes chr2R 20126230 intergenic not near genes chr2R 20126451 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-737 880 chr2R 20142469 20142484 chr2R 20142545 20142560 8 76 0.5 5.5 3.0 2.0 91 chr2R 20142469 intergenic not near genes chr2R 20142514 intergenic not near genes chr2R 20142560 intergenic not near genes chr2R_8_20140001 chr2R_20140001 RAL-737 881 chr2R 20433640 20433654 chr2R 20434006 20434021 11 367 9.5 5.0 7.2 1.3 381 chr2R 20433640 intron CG12484 + chr2R 20433830 intron CG12484 + chr2R 20434021 intron CG12484 + chr2R_11_20430001 chr2R_20430001 RAL-737 882 chr2R 20489910 20489918 chr2R 20490006 20490020 5 99 2.0 5.0 3.5 1.1 110 chr2R 20489910 intergenic not near genes chr2R 20489965 intergenic not near genes chr2R 20490020 intergenic not near genes chr2R_5_20485001 chr2R_20485001 RAL-737 883 chr2R 20506225 20506242 chr2R 20506314 20506333 6 92 3.0 2.0 2.5 1.7 108 chr2R 20506225 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506279 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506333 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_6_20505001 chr2R_20505001 RAL-737 884 chr2R 20569954 20569955 chr2R 20570017 20570027 4 71 0.0 6.0 3.0 1.0 73 chr2R 20569954 intron qsm - chr2R 20569990 intron qsm - chr2R 20570027 intron qsm - chr2R_4_20565001 chr2R_20565001 RAL-737 885 chr2R 20577094 20577119 chr2R 20577177 20577210 4 89 0.0 2.0 1.0 2.0 116 chr2R 20577094 intron qsm - chr2R 20577152 intron qsm - chr2R 20577210 intron qsm - chr2R_4_20575001 chr2R_20575001 RAL-737 886 chr2R 20631008 20631013 chr2R 20631087 20631107 4 90 3.5 2.5 3.0 1.0 99 chr2R 20631008 5` UTR Rcd6 - chr2R 20631058 5` UTR Rcd6 - chr2R 20631107 5` UTR Rcd6 - chr2R_4_20630001 chr2R_20630001 RAL-737 887 chr2R 20678212 20678232 chr2R 20678333 20678345 8 123 3.0 6.0 4.5 1.5 133 chr2R 20678212 intergenic not near genes chr2R 20678278 intergenic not near genes chr2R 20678345 intergenic not near genes chr2R_8_20675001 chr2R_20675001 RAL-737 888 chr2R 20783321 20783333 chr2R 20788087 20788089 F-element 6 4767 4.5 6.5 5.5 0.9 4768 chr2R 20783321 intergenic not near genes chr2R 20785705 intergenic not near genes chr2R 20788089 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-737 889 chr2R 20813025 20813057 chr2R 20813135 20813167 10 100 2.0 3.5 2.8 2.6 142 chr2R 20813025 intergenic not near genes chr2R 20813096 intergenic not near genes chr2R 20813167 intergenic not near genes chr2R_10_20810001 chr2R_20810001 RAL-737 890 chr2R 20833046 20833061 chr2R 20833110 20833142 4 76 0.5 8.0 4.2 0.8 96 chr2R 20833046 intron,intron insc -,sktl - chr2R 20833094 intron,intron insc -,sktl - chr2R 20833142 intron,intron insc -,sktl - chr2R_4_20830001 chr2R_20830001 RAL-737 891 chr2R 20838059 20838083 chr2R 20838140 20838164 5 81 0.0 3.5 1.8 1.8 105 chr2R 20838059 intron CR44667 + chr2R 20838112 intron CR44667 + chr2R 20838164 intron CR44667 + chr2R_5_20835001 chr2R_20835001 RAL-737 892 chr2R 20916445 20916465 chr2R 20916577 20916581 6 128 2.5 0.5 1.5 2.4 136 chr2R 20916445 intergenic Rx + chr2R 20916513 intergenic Rx + chr2R 20916581 intergenic Rx + chr2R_6_20915001 chr2R_20915001 RAL-737 893 chr2R 20962910 20962936 chr2R 20963008 20963034 11 98 6.0 10.0 8.0 1.2 124 chr2R 20962910 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963034 intergenic not near genes chr2R_11_20960001 chr2R_20960001 RAL-737 894 chr2R 21075693 21075707 chr2R 21075771 21075779 4 80 6.0 4.5 5.2 0.6 86 chr2R 21075693 intron Treh + chr2R 21075736 intron Treh + chr2R 21075779 intron Treh + chr2R_4_21075001 chr2R_21075001 RAL-737 895 chr2R 21366533 21366544 chr2R 21366637 21366649 4 105 7.5 6.0 6.8 0.5 116 chr2R 21366533 intron cv-2 - chr2R 21366591 intron cv-2 - chr2R 21366649 intron cv-2 - chr2R_4_21365001 chr2R_21365001 RAL-737 896 chr2R 21370517 21370533 chr2R 21370624 21370640 9 107 7.0 5.5 6.2 1.2 123 chr2R 21370517 intron cv-2 - chr2R 21370578 intron cv-2 - chr2R 21370640 intron cv-2 - chr2R_9_21370001 chr2R_21370001 RAL-737 897 chr2R 21408375 21408407 chr2R 21408467 21408499 10 88 9.5 2.5 6.0 1.4 124 chr2R 21408375 intron Sdc - chr2R 21408437 intron Sdc - chr2R 21408499 intron Sdc - chr2R_10_21405001 chr2R_21405001 RAL-737 898 chr2R 21421338 21421352 chr2R 21421417 21421430 4 79 13.0 11.0 12.0 0.3 92 chr2R 21421338 intron Sdc - chr2R 21421384 intron Sdc - chr2R 21421430 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-737 899 chr2R 21467536 21467548 chr2R 21467623 21467635 4 86 26.5 16.5 21.5 0.2 99 chr2R 21467536 intron Sdc - chr2R 21467586 intron Sdc - chr2R 21467635 intron Sdc - chr2R_4_21465001 chr2R_21465001 RAL-737 900 chr2R 21504654 21504678 chr2R 21504741 21504760 4 86 12.5 9.5 11.0 0.3 106 chr2R 21504654 intron MESK2 + chr2R 21504707 intron MESK2 + chr2R 21504760 intron MESK2 + chr2R_4_21500001 chr2R_21500001 RAL-737 901 chr2R 21546044 21546066 chr2R 21546117 21546145 15 75 9.0 7.5 8.2 1.6 101 chr2R 21546044 intron Egfr + chr2R 21546094 intron Egfr + chr2R 21546145 intron Egfr + chr2R_15_21545001 chr2R_21545001 RAL-737 902 chr2R 21726293 21726303 chr2R 21726358 21726386 4 70 8.0 5.5 6.8 0.5 93 chr2R 21726293 intergenic not near genes chr2R 21726340 intergenic not near genes chr2R 21726386 intergenic not near genes chr2R_4_21725001 chr2R_21725001 RAL-737 903 chr2R 21738286 21738308 chr2R 21747446 21747458 roo 4 9156 1.0 2.5 1.8 1.4 9172 chr2R 21738286 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-737 904 chr2R 21753084 21753112 chr2R 21753569 21753579 roo 9 481 6.5 7.0 6.8 1.2 495 chr2R 21753084 intergenic not near genes chr2R 21753332 intergenic not near genes chr2R 21753579 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-737 905 chr2R 21759575 21759590 chr2R 21759646 21759666 4 78 3.0 2.5 2.8 1.1 91 chr2R 21759575 intergenic not near genes chr2R 21759620 intergenic not near genes chr2R 21759666 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-737 906 chr2R 21805828 21805834 chr2R 21805905 21805911 4 77 15.0 5.5 10.2 0.4 83 chr2R 21805828 intergenic not near genes chr2R 21805870 intergenic not near genes chr2R 21805911 intergenic not near genes chr2R_4_21805001 chr2R_21805001 RAL-737 907 chr2R 21805835 21805861 chr2R 21805903 21805931 16 73 6.0 6.0 6.0 2.3 96 chr2R 21805835 intergenic not near genes chr2R 21805883 intergenic not near genes chr2R 21805931 intergenic not near genes chr2R_16_21805001 chr2R_21805001 RAL-737 908 chr2R 21809525 21809555 chr2R 21817765 21817788 roo 9 8237 5.5 5.0 5.2 1.5 8263 chr2R 21809525 intergenic not near genes chr2R 21813656 intergenic not near genes chr2R 21817788 intergenic not near genes chr2R_9_21810001 chr2R_21810001 RAL-737 909 chr2R 21833519 21833550 chr2R 21833598 21833626 8 78 5.0 8.5 6.8 1.0 107 chr2R 21833519 5` UTR CG34040 - chr2R 21833572 intergenic CG34040 - chr2R 21833626 intergenic CG34040 - chr2R_8_21830001 chr2R_21830001 RAL-737 910 chr2R 21857346 21857369 chr2R 21857436 21857460 5 89 5.5 4.0 4.8 0.9 114 chr2R 21857346 intergenic not near genes chr2R 21857403 intergenic not near genes chr2R 21857460 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-737 911 chr2R 21876178 21876193 chr2R 21876285 21876310 4 109 8.5 9.5 9.0 0.4 132 chr2R 21876178 intron Fili + chr2R 21876244 intron Fili + chr2R 21876310 intron Fili + chr2R_4_21875001 chr2R_21875001 RAL-737 912 chr2R 21886129 21886164 chr2R 21886208 21886242 16 77 6.5 5.0 5.8 2.4 113 chr2R 21886129 intron Fili + chr2R 21886186 intron Fili + chr2R 21886242 intron Fili + chr2R_16_21885001 chr2R_21885001 RAL-737 913 chr2R 21906271 21906299 chr2R 21906372 21906380 5 97 5.0 6.5 5.8 0.7 109 chr2R 21906271 intron Fili + chr2R 21906326 intron Fili + chr2R 21906380 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-737 914 chr2R 21907174 21907179 chr2R 21907829 21907832 4 654 8.0 10.5 9.2 0.4 658 chr2R 21907174 intron Fili + chr2R 21907503 intron Fili + chr2R 21907832 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-737 915 chr2R 21946774 21946804 chr2R 21946870 21946900 7 92 5.5 4.0 4.8 1.2 126 chr2R 21946774 intergenic not near genes chr2R 21946837 intergenic not near genes chr2R 21946900 intergenic not near genes chr2R_7_21945001 chr2R_21945001 RAL-737 916 chr2R 21993384 21993395 chr2R 21993469 21993486 4 90 16.0 5.0 10.5 0.3 102 chr2R 21993384 intron CG34370 - chr2R 21993435 intron CG34370 - chr2R 21993486 intron CG34370 - chr2R_4_21990001 chr2R_21990001 RAL-737 917 chr2R 22014211 22014228 chr2R 22014285 22014302 6 74 6.0 7.5 6.8 0.8 91 chr2R 22014211 intron CG34370 - chr2R 22014256 intron CG34370 - chr2R 22014302 intron CG34370 - chr2R_6_22010001 chr2R_22010001 RAL-737 918 chr2R 22029485 22029503 chr2R 22029620 22029641 4 137 2.0 3.5 2.8 1.1 156 chr2R 22029485 intron CG34370 - chr2R 22029563 intron CG34370 - chr2R 22029641 intron CG34370 - chr2R_4_22025001 chr2R_22025001 RAL-737 919 chr2R 22040156 22040187 chr2R 22040237 22040237 6 70 5.0 5.5 5.2 1.0 81 chr2R 22040156 intergenic not near genes chr2R 22040196 intergenic not near genes chr2R 22040237 intergenic not near genes chr2R_6_22040001 chr2R_22040001 RAL-737 920 chr2R 22135440 22135467 chr2R 22135546 22135564 4 100 4.0 6.0 5.0 0.7 124 chr2R 22135440 intergenic not near genes chr2R 22135502 intergenic not near genes chr2R 22135564 intergenic not near genes chr2R_4_22135001 chr2R_22135001 RAL-737 921 chr2R 22185683 22185708 chr2R 22185782 22185807 13 98 2.0 0.0 1.0 6.5 124 chr2R 22185683 3` UTR MED16 + chr2R 22185745 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_13_22185001 chr2R_22185001 RAL-737 922 chr2R 22189447 22189476 chr2R 22189574 22189603 12 124 5.0 4.5 4.8 2.1 156 chr2R 22189447 3` UTR Vps35 + chr2R 22189525 3` UTR Vps35 + chr2R 22189603 3` UTR Vps35 + chr2R_12_22185001 chr2R_22185001 RAL-737 923 chr2R 22349694 22349709 chr2R 22351478 22351493 jockey 5 1784 6.5 6.0 6.2 0.7 1799 chr2R 22349694 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351493 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-737 924 chr2R 22349711 22349726 chr2R 22351476 22351489 jockey 4 1774 4.0 5.5 4.8 0.7 1778 chr2R 22349711 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351489 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-737 925 chr2R 22360399 22360412 chr2R 22360809 22360817 jockey 4 412 6.5 1.0 3.8 0.8 418 chr2R 22360399 intron Liprin-gamma - chr2R 22360608 intron Liprin-gamma - chr2R 22360817 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-737 926 chr2R 22362660 22362685 chr2R 22362739 22362764 13 78 3.0 3.0 3.0 3.2 104 chr2R 22362660 intron Liprin-gamma - chr2R 22362712 intron Liprin-gamma - chr2R 22362764 intron Liprin-gamma - chr2R_13_22360001 chr2R_22360001 RAL-737 927 chr2R 22380366 22380385 chr2R 22380456 22380476 5 91 6.0 0.0 3.0 1.2 110 chr2R 22380366 intron wrapper + chr2R 22380421 intron wrapper + chr2R 22380476 intron wrapper + chr2R_5_22380001 chr2R_22380001 RAL-737 928 chr2R 22465317 22465349 chr2R 22465510 22465528 BS 9 190 0.5 5.5 3.0 2.2 211 chr2R 22465317 intron CG10384 + chr2R 22465422 intron CG10384 + chr2R 22465528 intron CG10384 + chr2R_9_22465001 chr2R_22465001 RAL-737 929 chr2R 22503871 22503886 chr2R 22503963 22503981 7 95 2.5 2.0 2.2 2.2 110 chr2R 22503871 intron px - chr2R 22503926 intron px - chr2R 22503981 intron px - chr2R_7_22500001 chr2R_22500001 RAL-737 930 chr2R 22525763 22525786 chr2R 22529300 22529320 jockey 7 3544 1.0 4.0 2.5 2.0 3557 chr2R 22525763 intron px - chr2R 22527542 intron px - chr2R 22529320 intron px - chr2R_7_22525001 chr2R_22525001 RAL-737 931 chr2R 22531004 22531019 chr2R 22531107 22531122 4 103 6.0 4.5 5.2 0.6 118 chr2R 22531004 intron px - chr2R 22531063 intron px - chr2R 22531122 intron px - chr2R_4_22530001 chr2R_22530001 RAL-737 932 chr2R 22531020 22531031 chr2R 22531101 22531134 5 90 3.5 3.5 3.5 1.1 114 chr2R 22531020 intron px - chr2R 22531077 intron px - chr2R 22531134 intron px - chr2R_5_22530001 chr2R_22530001 RAL-737 933 chr2R 22599597 22599603 chr2R 22599773 22599779 6 176 15.0 2.5 8.8 0.6 182 chr2R 22599597 intron CG4269 + chr2R 22599688 intron CG4269 + chr2R 22599779 intron CG4269 + chr2R_6_22595001 chr2R_22595001 RAL-737 934 chr2R 22599604 22599632 chr2R 22599770 22599807 16 171 6.5 2.0 4.2 3.1 203 chr2R 22599604 intron CG4269 + chr2R 22599706 intron CG4269 + chr2R 22599807 intron CG4269 + chr2R_16_22595001 chr2R_22595001 RAL-737 935 chr2R 22774982 22775002 chr2R 22775378 22775421 jockey 16 408 6.0 4.5 5.2 2.6 439 chr2R 22774982 intron CG42260 - chr2R 22775202 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_16_22775001 chr2R_22775001 RAL-737 936 chr2R 22834642 22834932 chr2R 22837415 22837688 5 2766 7.0 18.5 12.8 0.4 3046 chr2R 22834642 intergenic CG12490 +,CG30265 + chr2R 22836165 exon CG12490 + chr2R 22837688 intron CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-737 937 chr2R 22843026 22843049 chr2R 22844983 22845011 flea 12 1958 8.0 4.0 6.0 1.7 1985 chr2R 22843026 intergenic CG9826 + chr2R 22844018 intergenic not near genes chr2R 22845011 intergenic not near genes chr2R_12_22840001 chr2R_22840001 RAL-737 938 chr2R 22907403 22907436 chr2R 22907496 22907529 12 85 2.0 3.0 2.5 3.4 126 chr2R 22907403 intron nahoda + chr2R 22907466 intron nahoda + chr2R 22907529 intron nahoda + chr2R_12_22905001 chr2R_22905001 RAL-737 939 chr2R 22958363 22958390 chr2R 22958484 22958515 8 122 3.0 4.0 3.5 1.8 152 chr2R 22958363 intergenic not near genes chr2R 22958439 intergenic not near genes chr2R 22958515 intergenic not near genes chr2R_8_22955001 chr2R_22955001 RAL-737 940 chr2R 23115504 23115533 chr2R 23116018 23116046 13 514 4.5 4.5 4.5 2.4 542 chr2R 23115504 intergenic not near genes chr2R 23115775 intergenic not near genes chr2R 23116046 intergenic not near genes chr2R_13_23115001 chr2R_23115001 RAL-737 941 chr2R 23122909 23122941 chr2R 23122989 23123021 8 79 5.0 6.0 5.5 1.2 112 chr2R 23122909 intergenic not near genes chr2R 23122965 intergenic not near genes chr2R 23123021 intergenic not near genes chr2R_8_23120001 chr2R_23120001 RAL-737 942 chr2R 23155716 23155879 chr2R 23155803 23155955 11 83 3.0 4.5 3.8 2.3 239 chr2R 23155716 intron CG9899 + chr2R 23155836 intron CG9899 + chr2R 23155955 intron CG9899 + chr2R_11_23155001 chr2R_23155001 RAL-737 943 chr2R 23311733 23311762 chr2R 23311851 23311864 9 111 3.0 0.5 1.8 3.2 131 chr2R 23311733 intergenic not near genes chr2R 23311798 intergenic not near genes chr2R 23311864 intergenic not near genes chr2R_9_23310001 chr2R_23310001 RAL-737 944 chr2R 23348816 23348838 chr2R 23348884 23348892 7 68 3.0 3.5 3.2 1.7 76 chr2R 23348816 intergenic not near genes chr2R 23348854 intergenic not near genes chr2R 23348892 intergenic not near genes chr2R_7_23345001 chr2R_23345001 RAL-737 945 chr2R 23351919 23351951 chr2R 23352004 23352015 7 79 2.0 9.0 5.5 1.1 96 chr2R 23351919 exon CG34210 + chr2R 23351967 exon CG34210 + chr2R 23352015 3` UTR CG34210 + chr2R_7_23350001 chr2R_23350001 RAL-737 946 chr2R 23402611 23402623 chr2R 23407687 23407695 flea 6 5074 11.0 10.0 10.5 0.5 5084 chr2R 23402611 intergenic CG3520 - chr2R 23405153 intergenic not near genes chr2R 23407695 intergenic not near genes chr2R_6_23405001 chr2R_23405001 RAL-737 947 chr2R 23402629 23402642 chr2R 23407684 23407718 flea 8 5072 6.0 9.0 7.5 0.9 5089 chr2R 23402629 intergenic CG3520 - chr2R 23405174 intergenic not near genes chr2R 23407718 intergenic not near genes chr2R_8_23405001 chr2R_23405001 RAL-737 948 chr2R 23410094 23410123 chr2R 23410569 23410598 13 474 2.5 1.5 2.0 4.3 504 chr2R 23410094 intergenic not near genes chr2R 23410346 intergenic not near genes chr2R 23410598 intergenic not near genes chr2R_13_23410001 chr2R_23410001 RAL-737 949 chr2R 23508918 23508945 chr2R 23509035 23509062 10 116 17.5 15.5 16.5 0.6 144 chr2R 23508918 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509062 intergenic not near genes chr2R_10_23505001 chr2R_23505001 RAL-737 950 chr2R 23570411 23570432 chr2R 23570488 23570509 4 76 18.0 19.5 18.8 0.2 98 chr2R 23570411 intron apt + chr2R 23570460 intron apt + chr2R 23570509 intron apt + chr2R_4_23570001 chr2R_23570001 RAL-737 951 chr2R 23607038 23607193 chr2R 23607119 23607286 24 84 6.0 4.5 5.2 3.9 248 chr2R 23607038 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607286 intron CG17664 - chr2R_24_23605001 chr2R_23605001 RAL-737 952 chr2R 23684135 23684150 chr2R 23684231 23684242 6 95 13.5 10.0 11.8 0.5 107 chr2R 23684135 exon St3 + chr2R 23684188 intron St3 + chr2R 23684242 intron St3 + chr2R_6_23680001 chr2R_23680001 RAL-737 953 chr2R 23726230 23726246 chr2R 23726320 23726330 4 88 9.0 9.5 9.2 0.4 100 chr2R 23726230 intron Sesn + chr2R 23726280 intron Sesn + chr2R 23726330 intron Sesn + chr2R_4_23725001 chr2R_23725001 RAL-737 954 chr2R 23914301 23914329 chr2R 23921925 23921953 412 6 7620 3.5 3.5 3.5 1.3 7652 chr2R 23914301 exon kcc + chr2R 23918127 intron kcc + chr2R 23921953 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-737 955 chr2R 23986513 23986549 chr2R 23986593 23986629 20 76 2.5 3.5 3.0 5.0 116 chr2R 23986513 intron Phm - chr2R 23986571 intron Phm - chr2R 23986629 intron,5` UTR Phm -,CG30178 + chr2R_20_23985001 chr2R_23985001 RAL-737 956 chr2R 24031384 24031397 chr2R 24031468 24031480 10 83 15.5 7.0 11.2 0.8 96 chr2R 24031384 5` UTR CG30172 - chr2R 24031432 intergenic CG30172 -,Chi - chr2R 24031480 intergenic CG30172 -,Chi - chr2R_10_24030001 chr2R_24030001 RAL-737 957 chr2R 24031399 24031414 chr2R 24031467 24031498 7 74 7.0 7.0 7.0 0.9 99 chr2R 24031399 5` UTR CG30172 - chr2R 24031448 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-737 958 chr2R 24147067 24147095 chr2R 24154644 24154673 412 4 7577 2.5 5.0 3.8 0.8 7606 chr2R 24147067 intron Dat + chr2R 24150870 intron Dat + chr2R 24154673 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-737 959 chr2R 24177236 24177267 chr2R 24184721 24184737 412 12 7481 10.0 6.0 8.0 1.3 7501 chr2R 24177236 3` UTR Nop60B + chr2R 24180986 intron Nop60B + chr2R 24184737 3` UTR Nop60B + chr2R_12_24180001 chr2R_24180001 RAL-737 960 chr2R 24290558 24290592 chr2R 24290641 24290675 13 82 8.5 9.5 9.0 1.3 117 chr2R 24290558 3` UTR nvy + chr2R 24290616 3` UTR nvy + chr2R 24290675 3` UTR nvy + chr2R_13_24290001 chr2R_24290001 RAL-737 961 chr2R 24323617 24323652 chr2R 24323710 24323742 11 85 9.0 4.5 6.8 1.4 125 chr2R 24323617 intergenic not near genes chr2R 24323680 intergenic not near genes chr2R 24323742 intergenic not near genes chr2R_11_24320001 chr2R_24320001 RAL-737 962 chr2R 24353433 24353461 chr2R 24361795 24361823 roo 12 8361 1.5 6.5 4.0 2.4 8390 chr2R 24353433 intron,intron bs +,CR44811 - chr2R 24357628 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-737 963 chr2R 24383832 24383852 chr2R 24383908 24383933 5 80 10.0 11.5 10.8 0.4 101 chr2R 24383832 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383933 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-737 964 chr2R 24430807 24430946 chr2R 24430888 24431034 15 84 5.5 1.5 3.5 3.3 227 chr2R 24430807 intergenic CG15873 - chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24431034 intergenic Pgam5-2 -,CG15873 - chr2R_15_24430001 chr2R_24430001 RAL-737 965 chr2R 24636911 24636929 chr2R 24636997 24637015 4 86 10.0 12.0 11.0 0.3 104 chr2R 24636911 intron CG13594 - chr2R 24636963 intron CG13594 - chr2R 24637015 intron CG13594 - chr2R_4_24635001 chr2R_24635001 RAL-737 966 chr2R 24647592 24647616 chr2R 24655146 24655172 412 9 7547 4.5 2.5 3.5 2.0 7580 chr2R 24647592 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_9_24650001 chr2R_24650001 RAL-737 967 chr2R 24704696 24704707 chr2R 24704776 24704787 4 80 8.0 5.5 6.8 0.5 91 chr2R 24704696 intron Mid1 - chr2R 24704742 intron Mid1 - chr2R 24704787 intron Mid1 - chr2R_4_24700001 chr2R_24700001 RAL-737 968 chr2R 24722364 24722396 chr2R 24722446 24722462 10 78 13.5 10.5 12.0 0.8 98 chr2R 24722364 intron Mid1 - chr2R 24722413 intron Mid1 - chr2R 24722462 intron Mid1 - chr2R_10_24720001 chr2R_24720001 RAL-737 969 chr2R 24727883 24727910 chr2R 24735391 24735417 mdg1 6 7503 1.5 0.5 1.0 3.0 7534 chr2R 24727883 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735417 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-737 970 chr2R 24763609 24763644 chr2R 24765584 24765613 G2 10 1970 4.0 2.0 3.0 2.5 2004 chr2R 24763609 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-737 971 chr2R 24768002 24768022 chr2R 24768077 24768088 5 74 5.5 4.0 4.8 0.9 86 chr2R 24768002 5` UTR GstE12 - chr2R 24768045 5` UTR GstE12 - chr2R 24768088 5` UTR GstE12 - chr2R_5_24765001 chr2R_24765001 RAL-737 972 chr2R 24859847 24859865 chr2R 24859932 24859951 5 82 6.0 3.0 4.5 0.9 104 chr2R 24859847 5` UTR CR44829 + chr2R 24859899 5` UTR CR44829 + chr2R 24859951 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-737 973 chr2R 24884051 24884079 chr2R 24884133 24884161 7 79 16.5 14.5 15.5 0.4 110 chr2R 24884051 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884161 intron NKAIN + chr2R_7_24880001 chr2R_24880001 RAL-737 974 chr2R 25022647 25022673 chr2R 25022727 25022747 8 80 16.0 18.0 17.0 0.4 100 chr2R 25022647 intron uzip + chr2R 25022697 intron uzip + chr2R 25022747 intron uzip + chr2R_8_25020001 chr2R_25020001 RAL-737 975 chr2R 25078983 25079020 chr2R 25079111 25079125 16 121 9.5 12.0 10.8 1.4 142 chr2R 25078983 intron gol - chr2R 25079054 intron gol - chr2R 25079125 intron gol - chr2R_16_25075001 chr2R_25075001 RAL-737 976 chr2R 25135272 25135301 chr2R 25135352 25135385 6 84 15.5 13.5 14.5 0.4 113 chr2R 25135272 intron lov - chr2R 25135328 intron lov - chr2R 25135385 intron lov - chr2R_6_25135001 chr2R_25135001 RAL-737 977 chr2R 25141651 25141684 chr2R 25159341 25159374 roo 12 17689 2.5 7.0 4.8 2.1 17723 chr2R 25141651 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_12_25150001 chr2R_25150001 RAL-737 978 chr2R 25167132 25167152 chr2R 25167212 25167232 7 78 1.5 8.0 4.8 1.2 100 chr2R 25167132 intergenic not near genes chr2R 25167182 intergenic CG34038 + chr2R 25167232 intergenic CG34038 + chr2R_7_25165001 chr2R_25165001 RAL-737 979 chr2R 25173556 25173570 chr2R 25173711 25173729 5 157 16.0 7.5 11.8 0.4 173 chr2R 25173556 intergenic PebII - chr2R 25173642 3` UTR PebII - chr2R 25173729 3` UTR PebII - chr2R_5_25170001 chr2R_25170001 RAL-737 980 chr2R 25234765 25234797 chr2R 25234845 25234877 5 80 19.0 17.5 18.2 0.3 112 chr2R 25234765 intron CG9380 - chr2R 25234821 intron CG9380 - chr2R 25234877 intron CG9380 - chr2R_5_25230001 chr2R_25230001 RAL-737 981 chr2R 25248886 25248908 chr2R 25249240 25249248 9 350 7.5 11.0 9.2 0.9 362 chr2R 25248886 intron CG9380 - chr2R 25249067 intron,exon CG9380 -,CG33680 - chr2R 25249248 intron,exon CG9380 -,CG33680 - chr2R_9_25245001 chr2R_25245001 RAL-737 982 chr2R 25253447 25253472 chr2R 25253523 25253548 7 74 16.0 15.0 15.5 0.4 101 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253548 intron,intron CG9380 -,CG30428 + chr2R_7_25250001 chr2R_25250001 RAL-737 983 chr3L 23242 23275 chr3L 23487 23520 12 242 6.5 5.0 5.8 1.8 278 chr3L 23242 5` UTR mthl8 + chr3L 23381 5` UTR mthl8 + chr3L 23520 5` UTR mthl8 + chr3L_12_20001 chr3L_20001 RAL-737 984 chr3L 110210 110240 chr3L 119377 119407 roo 16 9166 5.0 5.0 5.0 2.7 9197 chr3L 110210 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119407 intergenic not near genes chr3L_16_110001 chr3L_110001 RAL-737 985 chr3L 402687 402718 chr3L 409740 409771 297 12 7047 3.0 9.0 6.0 1.7 7084 chr3L 402687 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-737 986 chr3L 416136 416151 chr3L 416224 416239 4 88 7.5 4.0 5.8 0.6 103 chr3L 416136 intergenic not near genes chr3L 416188 intergenic not near genes chr3L 416239 intergenic not near genes chr3L_4_415001 chr3L_415001 RAL-737 987 chr3L 561493 561512 chr3L 561560 561589 8 73 2.5 0.0 1.2 3.6 96 chr3L 561493 intron hipk + chr3L 561541 intron hipk + chr3L 561589 intron hipk + chr3L_8_560001 chr3L_560001 RAL-737 988 chr3L 642467 642498 chr3L 642558 642587 8 86 6.0 4.5 5.2 1.3 120 chr3L 642467 5` UTR CR43334 + chr3L 642527 5` UTR CR43334 + chr3L 642587 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-737 989 chr3L 665869 665883 chr3L 665952 665966 5 83 3.5 7.0 5.2 0.8 97 chr3L 665869 intergenic not near genes chr3L 665918 intergenic not near genes chr3L 665966 intergenic not near genes chr3L_5_665001 chr3L_665001 RAL-737 990 chr3L 705245 705262 chr3L 705321 705336 9 76 4.5 3.5 4.0 1.8 91 chr3L 705245 intergenic CR44514 + chr3L 705290 intergenic CR44514 + chr3L 705336 5` UTR CR44514 + chr3L_9_705001 chr3L_705001 RAL-737 991 chr3L 705899 705917 chr3L 705995 706013 10 96 7.0 4.0 5.5 1.5 114 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705956 3` UTR CG13895 - chr3L 706013 3` UTR CG13895 - chr3L_10_705001 chr3L_705001 RAL-737 992 chr3L 748217 748242 chr3L 748296 748321 4 79 1.0 4.5 2.8 1.1 104 chr3L 748217 intron hng3 - chr3L 748269 intron hng3 - chr3L 748321 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-737 993 chr3L 789914 789943 chr3L 790399 790428 roo 5 485 2.5 3.5 3.0 1.2 514 chr3L 789914 intergenic not near genes chr3L 790171 intergenic not near genes chr3L 790428 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-737 994 chr3L 800699 800728 chr3L 800789 800818 8 90 2.0 5.5 3.8 1.7 119 chr3L 800699 intergenic not near genes chr3L 800758 intergenic not near genes chr3L 800818 intergenic not near genes chr3L_8_800001 chr3L_800001 RAL-737 995 chr3L 925177 925199 chr3L 932603 932625 mdg1 12 7424 7.5 8.5 8.0 1.3 7448 chr3L 925177 intron Glut1 + chr3L 928901 intron Glut1 + chr3L 932625 intron Glut1 + chr3L_12_925001 chr3L_925001 RAL-737 996 chr3L 925200 925208 chr3L 932602 932612 mdg1 7 7408 4.0 8.5 6.2 1.0 7412 chr3L 925200 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932612 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-737 997 chr3L 933914 933944 chr3L 934014 934047 15 102 1.0 6.5 3.8 3.1 133 chr3L 933914 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934047 intron Glut1 + chr3L_15_930001 chr3L_930001 RAL-737 998 chr3L 939770 939801 chr3L 940891 940922 jockey 15 1115 9.0 6.0 7.5 1.8 1152 chr3L 939770 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_15_940001 chr3L_940001 RAL-737 999 chr3L 958318 958348 chr3L 958402 958427 12 81 6.0 6.0 6.0 1.7 109 chr3L 958318 intron Glut1 + chr3L 958372 intron Glut1 + chr3L 958427 intron Glut1 + chr3L_12_955001 chr3L_955001 RAL-737 1000 chr3L 1028826 1028839 chr3L 1028912 1028925 5 86 5.5 8.0 6.8 0.6 99 chr3L 1028826 intron trio - chr3L 1028876 intron trio - chr3L 1028925 intron trio - chr3L_5_1025001 chr3L_1025001 RAL-737 1001 chr3L 1028840 1028849 chr3L 1028898 1028900 6 72 2.5 5.5 4.0 1.2 60 chr3L 1028840 intron trio - chr3L 1028870 intron trio - chr3L 1028900 intron trio - chr3L_6_1025001 chr3L_1025001 RAL-737 1002 chr3L 1031576 1031615 chr3L 1031652 1031658 4 67 1.0 3.0 2.0 1.3 82 chr3L 1031576 intron trio - chr3L 1031617 intron trio - chr3L 1031658 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-737 1003 chr3L 1033329 1033333 chr3L 1033436 1033440 4 107 0.5 0.0 0.2 3.3 111 chr3L 1033329 intron trio - chr3L 1033384 intron trio - chr3L 1033440 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-737 1004 chr3L 1109635 1109667 chr3L 1109723 1109755 10 88 4.5 2.0 3.2 2.4 120 chr3L 1109635 intergenic not near genes chr3L 1109695 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_10_1105001 chr3L_1105001 RAL-737 1005 chr3L 1154133 1154155 chr3L 1163283 1163305 roo 11 9149 2.5 4.0 3.2 2.6 9172 chr3L 1154133 intron bab2 - chr3L 1158719 intron bab2 - chr3L 1163305 intron bab2 - chr3L_11_1155001 chr3L_1155001 RAL-737 1006 chr3L 1154156 1154162 chr3L 1163280 1163304 roo 6 9143 2.5 4.0 3.2 1.4 9148 chr3L 1154156 intron bab2 - chr3L 1158730 intron bab2 - chr3L 1163304 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-737 1007 chr3L 1219596 1219616 chr3L 1227329 1227335 412 5 7730 1.5 6.5 4.0 1.0 7739 chr3L 1219596 intron mwh + chr3L 1223466 intron mwh + chr3L 1227335 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-737 1008 chr3L 1257640 1257655 chr3L 1257720 1257735 6 80 0.5 10.5 5.5 0.9 95 chr3L 1257640 intron CG9134 + chr3L 1257688 intron CG9134 + chr3L 1257735 intron CG9134 + chr3L_6_1255001 chr3L_1255001 RAL-737 1009 chr3L 1374374 1374385 chr3L 1374627 1374639 8 254 5.5 3.5 4.5 1.5 265 chr3L 1374374 intron,intron Ptp61F -,ru + chr3L 1374506 intron,intron Ptp61F -,ru + chr3L 1374639 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-737 1010 chr3L 1385173 1385210 chr3L 1385261 1385298 22 85 6.5 4.0 5.2 3.5 125 chr3L 1385173 intron,intron Ptp61F -,ru + chr3L 1385236 intron,intron Ptp61F -,ru + chr3L 1385298 intron,intron Ptp61F -,ru + chr3L_22_1385001 chr3L_1385001 RAL-737 1011 chr3L 1463419 1463442 chr3L 1463498 1463514 5 77 7.0 9.0 8.0 0.6 95 chr3L 1463419 intron Ptp61F - chr3L 1463466 intron Ptp61F - chr3L 1463514 intron Ptp61F - chr3L_5_1460001 chr3L_1460001 RAL-737 1012 chr3L 1505997 1506031 chr3L 1513594 1513628 17.6 16 7594 4.0 9.5 6.8 2.1 7631 chr3L 1505997 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-737 1013 chr3L 1537065 1537085 chr3L 1537142 1537171 4 84 1.0 5.5 3.2 1.0 106 chr3L 1537065 intergenic CG7852 +,CG12091 - chr3L 1537118 intergenic CG7852 +,CG12091 - chr3L 1537171 5` UTR CG7852 + chr3L_4_1535001 chr3L_1535001 RAL-737 1014 chr3L 1639226 1639237 chr3L 1639403 1639418 6 180 4.0 2.0 3.0 1.5 192 chr3L 1639226 5` UTR metl - chr3L 1639322 intergenic metl -,Bgb + chr3L 1639418 intergenic metl -,Bgb + chr3L_6_1635001 chr3L_1635001 RAL-737 1015 chr3L 1740852 1740885 chr3L 1741097 1741109 pogo 11 243 5.0 2.0 3.5 2.4 257 chr3L 1740852 intron Gk + chr3L 1740980 intron Gk + chr3L 1741109 intron Gk + chr3L_11_1740001 chr3L_1740001 RAL-737 1016 chr3L 1806998 1807011 chr3L 1807081 1807092 6 83 4.0 3.0 3.5 1.3 94 chr3L 1806998 intergenic CR45686 -,CG42676 + chr3L 1807045 intergenic CR45686 -,CG42676 +,CR45687 + chr3L 1807092 intergenic CR45686 -,CG42676 +,CR45687 + chr3L_6_1805001 chr3L_1805001 RAL-737 1017 chr3L 1991122 1991143 chr3L 1991200 1991220 6 77 3.5 3.5 3.5 1.3 98 chr3L 1991122 intergenic not near genes chr3L 1991171 intergenic not near genes chr3L 1991220 intergenic not near genes chr3L_6_1990001 chr3L_1990001 RAL-737 1018 chr3L 2035266 2035293 chr3L 2035340 2035353 15 74 6.0 0.5 3.2 3.6 87 chr3L 2035266 intergenic not near genes chr3L 2035310 intergenic not near genes chr3L 2035353 intergenic not near genes chr3L_15_2035001 chr3L_2035001 RAL-737 1019 chr3L 2108248 2108274 chr3L 2113452 2113473 copia 9 5202 4.5 4.5 4.5 1.6 5225 chr3L 2108248 intron sls - chr3L 2110860 intron sls - chr3L 2113473 intron sls - chr3L_9_2110001 chr3L_2110001 RAL-737 1020 chr3L 2139210 2139233 chr3L 2139286 2139314 7 79 5.0 6.0 5.5 1.1 104 chr3L 2139210 intron zormin - chr3L 2139262 intron zormin - chr3L 2139314 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-737 1021 chr3L 2168775 2168803 chr3L 2168866 2168894 10 91 5.0 5.0 5.0 1.7 119 chr3L 2168775 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168894 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-737 1022 chr3L 2176683 2176714 chr3L 2177092 2177122 8 405 2.5 4.5 3.5 1.8 439 chr3L 2176683 intergenic not near genes chr3L 2176902 intergenic not near genes chr3L 2177122 intergenic not near genes chr3L_8_2175001 chr3L_2175001 RAL-737 1023 chr3L 2308004 2308032 chr3L 2308110 2308138 14 103 3.0 4.0 3.5 3.1 134 chr3L 2308004 intergenic not near genes chr3L 2308071 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_14_2305001 chr3L_2305001 RAL-737 1024 chr3L 2336827 2336848 chr3L 2336905 2336926 12 78 4.5 3.0 3.8 2.5 99 chr3L 2336827 intron MsR1 + chr3L 2336876 intron MsR1 + chr3L 2336926 intron MsR1 + chr3L_12_2335001 chr3L_2335001 RAL-737 1025 chr3L 2447502 2447536 chr3L 2456658 2456665 roo 10 9148 5.5 4.0 4.8 1.7 9163 chr3L 2447502 intron CG45186 + chr3L 2452084 intron CG45186 + chr3L 2456665 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-737 1026 chr3L 2459162 2459168 chr3L 2459315 2459329 4 159 2.5 7.5 5.0 0.7 167 chr3L 2459162 intron CG45186 + chr3L 2459246 intron CG45186 + chr3L 2459329 intron CG45186 + chr3L_4_2455001 chr3L_2455001 RAL-737 1027 chr3L 2483614 2483639 chr3L 2483873 2483879 4 251 1.5 0.0 0.8 2.2 265 chr3L 2483614 intron CG45186 + chr3L 2483746 intron CG45186 + chr3L 2483879 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-737 1028 chr3L 2533655 2533668 chr3L 2533732 2533749 4 80 10.0 4.0 7.0 0.5 94 chr3L 2533655 intron Spn - chr3L 2533702 intron Spn - chr3L 2533749 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-737 1029 chr3L 2554055 2554088 chr3L 2554133 2554143 10 76 3.5 0.0 1.8 3.6 88 chr3L 2554055 intron Spn - chr3L 2554099 5` UTR Spn - chr3L 2554143 5` UTR Spn - chr3L_10_2550001 chr3L_2550001 RAL-737 1030 chr3L 2591711 2591745 chr3L 2591798 2591832 14 85 3.5 3.0 3.2 3.3 121 chr3L 2591711 intron dos + chr3L 2591772 intron dos + chr3L 2591832 intron dos + chr3L_14_2590001 chr3L_2590001 RAL-737 1031 chr3L 2657103 2657128 chr3L 2657181 2657209 12 79 10.0 2.0 6.0 1.7 106 chr3L 2657103 3` UTR Fife - chr3L 2657156 3` UTR Fife - chr3L 2657209 3` UTR Fife - chr3L_12_2655001 chr3L_2655001 RAL-737 1032 chr3L 2667914 2667924 chr3L 2667979 2668000 4 72 3.0 7.0 5.0 0.7 86 chr3L 2667914 intron Fife - chr3L 2667957 intron Fife - chr3L 2668000 intron Fife - chr3L_4_2665001 chr3L_2665001 RAL-737 1033 chr3L 2683942 2683979 chr3L 2684018 2684051 16 73 5.5 5.5 5.5 2.5 109 chr3L 2683942 intron Fife - chr3L 2683996 intron Fife - chr3L 2684051 intron Fife - chr3L_16_2680001 chr3L_2680001 RAL-737 1034 chr3L 2719543 2719558 chr3L 2719640 2719660 5 101 4.0 5.0 4.5 0.9 117 chr3L 2719543 3` UTR Mrtf - chr3L 2719602 3` UTR Mrtf - chr3L 2719660 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-737 1035 chr3L 2725057 2725090 chr3L 2725134 2725167 9 69 3.5 5.0 4.2 1.7 110 chr3L 2725057 intron Mrtf - chr3L 2725112 intron Mrtf - chr3L 2725167 intron Mrtf - chr3L_9_2725001 chr3L_2725001 RAL-737 1036 chr3L 2751455 2751469 chr3L 2755750 2755763 F-element 4 4293 8.5 4.5 6.5 0.5 4308 chr3L 2751455 intron Mrtf - chr3L 2753609 intron Mrtf - chr3L 2755763 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-737 1037 chr3L 2766746 2766765 chr3L 2766833 2766862 7 92 1.0 3.5 2.2 2.2 116 chr3L 2766746 intergenic Non2 +,Mrtf - chr3L 2766804 intergenic Non2 +,Mrtf - chr3L 2766862 intergenic Non2 +,Mrtf - chr3L_7_2765001 chr3L_2765001 RAL-737 1038 chr3L 2863799 2863815 chr3L 2863879 2863895 9 80 3.0 0.0 1.5 3.6 96 chr3L 2863799 intron CG43444 - chr3L 2863847 intron CG43444 - chr3L 2863895 intron CG43444 - chr3L_9_2860001 chr3L_2860001 RAL-737 1039 chr3L 2927837 2927865 chr3L 2936114 2936121 Tirant 8 8271 6.5 7.0 6.8 1.0 8284 chr3L 2927837 intron Shab + chr3L 2931979 intron Shab + chr3L 2936121 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-737 1040 chr3L 2966722 2966731 chr3L 2974146 2974155 mdg1 6 7424 9.0 3.0 6.0 0.9 7433 chr3L 2966722 intergenic not near genes chr3L 2970438 intergenic not near genes chr3L 2974155 intergenic not near genes chr3L_6_2970001 chr3L_2970001 RAL-737 1041 chr3L 2983303 2983313 chr3L 2983385 2983395 4 82 7.0 0.0 3.5 0.9 92 chr3L 2983303 exon CG2107 + chr3L 2983349 3` UTR CG2107 + chr3L 2983395 3` UTR CG2107 + chr3L_4_2980001 chr3L_2980001 RAL-737 1042 chr3L 2983314 2983323 chr3L 2983373 2983398 5 66 4.0 0.0 2.0 1.7 84 chr3L 2983314 3` UTR CG2107 + chr3L 2983356 3` UTR CG2107 + chr3L 2983398 3` UTR CG2107 + chr3L_5_2980001 chr3L_2980001 RAL-737 1043 chr3L 2987714 2987731 chr3L 2987796 2987798 5 79 2.5 3.5 3.0 1.2 84 chr3L 2987714 intergenic not near genes chr3L 2987756 intergenic not near genes chr3L 2987798 intergenic not near genes chr3L_5_2985001 chr3L_2985001 RAL-737 1044 chr3L 3040327 3040350 chr3L 3042116 3042139 S-element 7 1789 2.5 0.5 1.5 2.8 1812 chr3L 3040327 3` UTR CG2162 + chr3L 3041233 intergenic not near genes chr3L 3042139 intergenic Jafrac2 + chr3L_7_3040001 chr3L_3040001 RAL-737 1045 chr3L 3051744 3051755 chr3L 3051986 3051997 pogo 6 242 8.0 2.0 5.0 1.0 253 chr3L 3051744 3` UTR CG32485 + chr3L 3051870 intergenic CG32485 + chr3L 3051997 intergenic CG32485 + chr3L_6_3050001 chr3L_3050001 RAL-737 1046 chr3L 3104864 3104903 chr3L 3104945 3104958 7 77 0.0 3.5 1.8 2.5 94 chr3L 3104864 intron Cht7 - chr3L 3104911 intron Cht7 - chr3L 3104958 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-737 1047 chr3L 3259643 3259651 chr3L 3259713 3259746 5 81 3.5 4.0 3.8 1.0 103 chr3L 3259643 intron ckd + chr3L 3259694 intron ckd + chr3L 3259746 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-737 1048 chr3L 3281443 3281455 chr3L 3281939 3281949 Doc 5 494 5.0 5.0 5.0 0.8 506 chr3L 3281443 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281949 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-737 1049 chr3L 3281462 3281471 chr3L 3281931 3281967 Doc 5 491 3.5 4.0 3.8 1.0 505 chr3L 3281462 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-737 1050 chr3L 3317532 3317558 chr3L 3317611 3317637 10 78 1.0 4.5 2.8 2.6 105 chr3L 3317532 intergenic Drsl5 +,PIG-C - chr3L 3317584 intergenic Drsl5 +,PIG-C - chr3L 3317637 intergenic PIG-C -,Drsl5 + chr3L_10_3315001 chr3L_3315001 RAL-737 1051 chr3L 3341264 3341294 chr3L 3341344 3341374 12 77 4.0 3.5 3.8 2.5 110 chr3L 3341264 intron kst + chr3L 3341319 intron kst + chr3L 3341374 intron kst + chr3L_12_3340001 chr3L_3340001 RAL-737 1052 chr3L 3436288 3436313 chr3L 3436367 3436392 11 79 4.5 4.5 4.5 2.0 104 chr3L 3436288 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436392 intron eIF5B - chr3L_11_3435001 chr3L_3435001 RAL-737 1053 chr3L 3475077 3475111 chr3L 3475521 3475555 jockey 5 432 1.0 2.5 1.8 1.8 478 chr3L 3475077 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_5_3475001 chr3L_3475001 RAL-737 1054 chr3L 3484384 3484404 chr3L 3484553 3484562 15 170 4.5 5.5 5.0 2.5 178 chr3L 3484384 intron,intron CG42324 +,CG43074 - chr3L 3484473 intron,exon CG42324 +,CG43074 - chr3L 3484562 intron,intron CG42324 +,CG43074 - chr3L_15_3480001 chr3L_3480001 RAL-737 1055 chr3L 3539957 3539990 chr3L 3540046 3540078 6 84 0.5 0.0 0.2 5.0 121 chr3L 3539957 intron Eip63E + chr3L 3540018 intron Eip63E + chr3L 3540078 intron Eip63E + chr3L_6_3540001 chr3L_3540001 RAL-737 1056 chr3L 3573168 3573185 chr3L 3573251 3573267 7 82 8.5 4.0 6.2 1.0 99 chr3L 3573168 intron Eip63E + chr3L 3573218 intron Eip63E + chr3L 3573267 intron Eip63E + chr3L_7_3570001 chr3L_3570001 RAL-737 1057 chr3L 3601296 3601330 chr3L 3606607 3606616 copia 13 5303 8.0 2.0 5.0 2.2 5320 chr3L 3601296 intron Eip63E + chr3L 3603956 intron Eip63E + chr3L 3606616 intron Eip63E + chr3L_13_3600001 chr3L_3600001 RAL-737 1058 chr3L 3720970 3720980 chr3L 3721046 3721058 5 80 12.0 3.0 7.5 0.6 88 chr3L 3720970 intron CG32264 - chr3L 3721014 intron CG32264 - chr3L 3721058 intron CG32264 - chr3L_5_3720001 chr3L_3720001 RAL-737 1059 chr3L 3763757 3763764 chr3L 3763838 3763845 7 81 3.5 0.0 1.8 2.5 88 chr3L 3763757 intron CG32264 - chr3L 3763801 intron CG32264 - chr3L 3763845 intron CG32264 - chr3L_7_3760001 chr3L_3760001 RAL-737 1060 chr3L 3766737 3766760 chr3L 3766823 3766825 6 82 2.0 0.0 1.0 3.0 88 chr3L 3766737 intron CG32264 - chr3L 3766781 intron CG32264 - chr3L 3766825 intron CG32264 - chr3L_6_3765001 chr3L_3765001 RAL-737 1061 chr3L 3783279 3783287 chr3L 3783355 3783363 4 76 1.0 3.5 2.2 1.2 84 chr3L 3783279 intron CG32264 - chr3L 3783321 intron CG32264 - chr3L 3783363 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-737 1062 chr3L 3798043 3798072 chr3L 3798123 3798130 5 74 2.5 4.0 3.2 1.2 87 chr3L 3798043 intron CG32264 - chr3L 3798086 intron CG32264 - chr3L 3798130 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-737 1063 chr3L 3815054 3815072 chr3L 3815135 3815153 9 81 9.5 7.5 8.5 0.9 99 chr3L 3815054 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815104 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815153 intron,intron Scsalpha +,CR43932 - chr3L_9_3815001 chr3L_3815001 RAL-737 1064 chr3L 3815075 3815082 chr3L 3815134 3815163 6 73 7.0 7.5 7.2 0.7 88 chr3L 3815075 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815119 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815163 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-737 1065 chr3L 3833748 3833764 chr3L 3833982 3834004 pogo 5 235 3.5 2.5 3.0 1.2 256 chr3L 3833748 intron enc + chr3L 3833876 intron enc + chr3L 3834004 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-737 1066 chr3L 3833765 3833770 chr3L 3833978 3834011 pogo 5 225 3.0 2.5 2.8 1.3 246 chr3L 3833765 intron enc + chr3L 3833888 intron enc + chr3L 3834011 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-737 1067 chr3L 3872285 3872289 chr3L 3872378 3872382 4 93 0.5 7.0 3.8 0.8 97 chr3L 3872285 intergenic not near genes chr3L 3872334 intergenic not near genes chr3L 3872382 intergenic not near genes chr3L_4_3870001 chr3L_3870001 RAL-737 1068 chr3L 3872291 3872299 chr3L 3872358 3872381 6 82 0.5 4.0 2.2 1.9 90 chr3L 3872291 intergenic not near genes chr3L 3872336 intergenic not near genes chr3L 3872381 intergenic not near genes chr3L_6_3870001 chr3L_3870001 RAL-737 1069 chr3L 3873911 3873941 chr3L 3873991 3874022 12 77 4.5 4.0 4.2 2.3 111 chr3L 3873911 intergenic not near genes chr3L 3873966 intergenic not near genes chr3L 3874022 intergenic not near genes chr3L_12_3870001 chr3L_3870001 RAL-737 1070 chr3L 3889134 3889147 chr3L 3889217 3889229 7 81 1.5 2.0 1.8 2.5 95 chr3L 3889134 intergenic not near genes chr3L 3889182 intergenic not near genes chr3L 3889229 intergenic not near genes chr3L_7_3885001 chr3L_3885001 RAL-737 1071 chr3L 3912504 3912517 chr3L 3912580 3912593 4 76 5.0 7.0 6.0 0.6 89 chr3L 3912504 intron Eip63F-1 - chr3L 3912548 intron Eip63F-1 - chr3L 3912593 intron Eip63F-1 - chr3L_4_3910001 chr3L_3910001 RAL-737 1072 chr3L 3914177 3914210 chr3L 3914262 3914295 15 77 6.0 4.0 5.0 2.5 118 chr3L 3914177 intron Eip63F-1 - chr3L 3914236 intron Eip63F-1 - chr3L 3914295 intron Eip63F-1 - chr3L_15_3910001 chr3L_3910001 RAL-737 1073 chr3L 3968046 3968056 chr3L 3968125 3968135 6 79 2.0 4.0 3.0 1.5 89 chr3L 3968046 intergenic not near genes chr3L 3968090 intergenic not near genes chr3L 3968135 intergenic not near genes chr3L_6_3965001 chr3L_3965001 RAL-737 1074 chr3L 3995001 3995009 chr3L 3995095 3995103 7 94 3.5 2.5 3.0 1.8 102 chr3L 3995001 intergenic not near genes chr3L 3995052 intergenic not near genes chr3L 3995103 intergenic not near genes chr3L_7_3995001 chr3L_3995001 RAL-737 1075 chr3L 4015732 4015766 chr3L 4015815 4015849 10 78 3.0 6.0 4.5 1.8 117 chr3L 4015732 intergenic not near genes chr3L 4015790 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_10_4015001 chr3L_4015001 RAL-737 1076 chr3L 4146810 4146839 chr3L 4146892 4146921 10 80 0.0 2.5 1.2 4.5 111 chr3L 4146810 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146921 intergenic not near genes chr3L_10_4145001 chr3L_4145001 RAL-737 1077 chr3L 4170157 4170166 chr3L 4170235 4170244 4 78 0.5 5.5 3.0 1.0 87 chr3L 4170157 intergenic Ero1L + chr3L 4170200 intergenic Ero1L + chr3L 4170244 intergenic Ero1L + chr3L_4_4170001 chr3L_4170001 RAL-737 1078 chr3L 4209831 4209849 chr3L 4209909 4209927 12 77 2.0 4.5 3.2 2.9 96 chr3L 4209831 intron CG43367 + chr3L 4209879 intron CG43367 + chr3L 4209927 intron CG43367 + chr3L_12_4205001 chr3L_4205001 RAL-737 1079 chr3L 4328737 4328764 chr3L 4336235 4336262 412 11 7495 4.0 6.5 5.2 1.8 7525 chr3L 4328737 intron Cip4 - chr3L 4332500 intron Cip4 - chr3L 4336262 intron Cip4 - chr3L_11_4330001 chr3L_4330001 RAL-737 1080 chr3L 4341331 4341335 chr3L 21448026 21448026 4 17106692 18.5 24.5 21.5 0.2 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-737 1081 chr3L 4344889 4345065 chr3L 4344996 4345141 10 99 0.0 0.0 0.0 10.0 252 chr3L 4344889 intron Cip4 - chr3L 4345015 intron Cip4 - chr3L 4345141 intron Cip4 - chr3L_10_4345001 chr3L_4345001 RAL-737 1082 chr3L 4382312 4382338 chr3L 4382414 4382425 9 98 5.5 5.5 5.5 1.4 113 chr3L 4382312 intergenic not near genes chr3L 4382368 intergenic not near genes chr3L 4382425 intergenic not near genes chr3L_9_4380001 chr3L_4380001 RAL-737 1083 chr3L 4477582 4477600 chr3L 4478161 4478176 8 576 27.5 32.5 30.0 0.3 594 chr3L 4477582 intergenic not near genes chr3L 4477879 intergenic not near genes chr3L 4478176 intergenic not near genes chr3L_8_4475001 chr3L_4475001 RAL-737 1084 chr3L 4519420 4519428 chr3L 4519497 4519505 4 76 16.5 1.5 9.0 0.4 85 chr3L 4519420 intron Tie - chr3L 4519462 intron Tie - chr3L 4519505 intron Tie - chr3L_4_4515001 chr3L_4515001 RAL-737 1085 chr3L 4519429 4519452 chr3L 4519492 4519505 13 69 6.0 0.5 3.2 3.1 76 chr3L 4519429 intron Tie - chr3L 4519467 intron Tie - chr3L 4519505 intron Tie - chr3L_13_4515001 chr3L_4515001 RAL-737 1086 chr3L 4607285 4607292 chr3L 4607376 4607383 4 91 0.5 12.5 6.5 0.5 98 chr3L 4607285 intron Src64B - chr3L 4607334 intron Src64B - chr3L 4607383 intron Src64B - chr3L_4_4605001 chr3L_4605001 RAL-737 1087 chr3L 4858304 4858326 chr3L 4858394 4858416 7 88 7.0 5.0 6.0 1.0 112 chr3L 4858304 intergenic not near genes chr3L 4858360 intergenic not near genes chr3L 4858416 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-737 1088 chr3L 4901130 4901146 chr3L 4907320 4907329 diver 6 6188 9.5 4.5 7.0 0.8 6199 chr3L 4901130 intergenic CG13704 + chr3L 4904230 intergenic not near genes chr3L 4907329 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-737 1089 chr3L 4901148 4901157 chr3L 4907314 4907337 diver 4 6182 6.0 4.0 5.0 0.7 6189 chr3L 4901148 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907337 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-737 1090 chr3L 5034157 5034192 chr3L 5043309 5043336 roo 15 9144 2.0 2.5 2.2 4.7 9179 chr3L 5034157 intron Con - chr3L 5038746 intron Con - chr3L 5043336 intron Con - chr3L_15_5035001 chr3L_5035001 RAL-737 1091 chr3L 5045458 5045464 chr3L 5050238 5050245 Doc 6 4780 9.5 5.5 7.5 0.7 4787 chr3L 5045458 intron Con - chr3L 5047852 intron Con - chr3L 5050245 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-737 1092 chr3L 5045467 5045486 chr3L 5050234 5050267 Doc 11 4779 7.5 3.0 5.2 1.8 4800 chr3L 5045467 intron Con - chr3L 5047867 intron Con - chr3L 5050267 intron Con - chr3L_11_5045001 chr3L_5045001 RAL-737 1093 chr3L 5066310 5066325 chr3L 5066401 5066424 5 97 2.0 3.0 2.5 1.4 114 chr3L 5066310 intron Con - chr3L 5066367 intron Con - chr3L 5066424 intron Con - chr3L_5_5065001 chr3L_5065001 RAL-737 1094 chr3L 5101205 5101231 chr3L 5101280 5101311 14 78 2.5 6.0 4.2 2.7 106 chr3L 5101205 intergenic not near genes chr3L 5101258 intergenic not near genes chr3L 5101311 intergenic not near genes chr3L_14_5100001 chr3L_5100001 RAL-737 1095 chr3L 5104484 5104512 chr3L 5124616 5124646 11 20134 4.5 3.5 4.0 2.2 20162 chr3L 5104484 intergenic not near genes chr3L 5114565 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_11_5110001 chr3L_5110001 RAL-737 1096 chr3L 5130929 5130955 chr3L 5131032 5131057 9 103 3.0 3.5 3.2 2.1 128 chr3L 5130929 intergenic not near genes chr3L 5130993 intergenic not near genes chr3L 5131057 intergenic CG15212 + chr3L_9_5130001 chr3L_5130001 RAL-737 1097 chr3L 5164635 5164668 chr3L 5164711 5164744 22 75 4.5 4.0 4.2 4.2 109 chr3L 5164635 intron shep - chr3L 5164690 intron shep - chr3L 5164744 intron shep - chr3L_22_5160001 chr3L_5160001 RAL-737 1098 chr3L 5188798 5188822 chr3L 5189549 5189572 6 750 3.5 6.0 4.8 1.0 774 chr3L 5188798 intron shep - chr3L 5189185 intron shep - chr3L 5189572 intron shep - chr3L_6_5185001 chr3L_5185001 RAL-737 1099 chr3L 5203098 5203116 chr3L 5203201 5203221 11 104 4.0 2.5 3.2 2.6 123 chr3L 5203098 intron shep - chr3L 5203160 intron shep - chr3L 5203221 intron shep - chr3L_11_5200001 chr3L_5200001 RAL-737 1100 chr3L 5261167 5261182 chr3L 5261246 5261261 5 79 5.5 5.5 5.5 0.8 94 chr3L 5261167 intron shep - chr3L 5261214 intron shep - chr3L 5261261 intron shep - chr3L_5_5260001 chr3L_5260001 RAL-737 1101 chr3L 5349372 5349390 chr3L 5349634 5349652 8 264 19.5 23.5 21.5 0.4 280 chr3L 5349372 intron lama - chr3L 5349512 intron lama - chr3L 5349652 intron lama - chr3L_8_5345001 chr3L_5345001 RAL-737 1102 chr3L 5427353 5427371 chr3L 5427957 5427976 9 605 4.5 2.5 3.5 2.0 623 chr3L 5427353 intron CG34391 + chr3L 5427664 intron CG34391 + chr3L 5427976 intron CG34391 + chr3L_9_5425001 chr3L_5425001 RAL-737 1103 chr3L 5427374 5427385 chr3L 5427956 5427990 5 600 3.0 2.0 2.5 1.4 616 chr3L 5427374 intron CG34391 + chr3L 5427682 intron CG34391 + chr3L 5427990 intron CG34391 + chr3L_5_5425001 chr3L_5425001 RAL-737 1104 chr3L 5482946 5483093 chr3L 5483155 5483192 10 149 3.0 6.0 4.5 1.8 246 chr3L 5482946 exon CG4835 + chr3L 5483069 exon CG4835 + chr3L 5483192 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-737 1105 chr3L 5498434 5498434 chr3L 5498484 5498511 4 66 1.5 7.5 4.5 0.7 77 chr3L 5498434 exon blanks - chr3L 5498472 exon blanks - chr3L 5498511 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-737 1106 chr3L 5521495 5521524 chr3L 5521583 5521613 9 88 6.5 8.0 7.2 1.1 118 chr3L 5521495 intron Lkr - chr3L 5521554 intron Lkr - chr3L 5521613 intron Lkr - chr3L_9_5520001 chr3L_5520001 RAL-737 1107 chr3L 5537726 5537755 chr3L 5538068 5538097 jockey 6 341 3.5 7.0 5.2 1.0 371 chr3L 5537726 intergenic not near genes chr3L 5537912 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-737 1108 chr3L 5726863 5726891 chr3L 5726970 5726998 5 107 5.5 4.5 5.0 0.8 135 chr3L 5726863 intron sif + chr3L 5726930 intron sif + chr3L 5726998 intron sif + chr3L_5_5725001 chr3L_5725001 RAL-737 1109 chr3L 5910032 5910058 chr3L 5910273 5910299 pogo 11 238 6.5 5.0 5.8 1.6 267 chr3L 5910032 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910299 intron CG13288 + chr3L_11_5910001 chr3L_5910001 RAL-737 1110 chr3L 5983831 5983840 chr3L 5983952 5983961 5 121 10.5 4.5 7.5 0.6 130 chr3L 5983831 3` UTR CR45439 - chr3L 5983896 intergenic CR45439 -,CR45440 - chr3L 5983961 intergenic CR45439 -,CR45440 - chr3L_5_5980001 chr3L_5980001 RAL-737 1111 chr3L 6001698 6001717 chr3L 6004377 6004393 jockey 4 2689 4.5 1.0 2.8 1.1 2695 chr3L 6001698 intron PVRAP + chr3L 6003046 intron PVRAP + chr3L 6004393 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-737 1112 chr3L 6028382 6028397 chr3L 6028480 6028494 5 94 10.0 10.0 10.0 0.5 112 chr3L 6028382 intergenic not near genes chr3L 6028438 intergenic not near genes chr3L 6028494 intergenic not near genes chr3L_5_6025001 chr3L_6025001 RAL-737 1113 chr3L 6040366 6040391 chr3L 6042722 6042747 Doc 11 2354 6.0 1.5 3.8 2.3 2381 chr3L 6040366 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042747 intergenic not near genes chr3L_11_6040001 chr3L_6040001 RAL-737 1114 chr3L 6142515 6142532 chr3L 6142724 6142742 6 210 7.5 8.5 8.0 0.7 227 chr3L 6142515 intergenic Cpr65Aw - chr3L 6142628 intergenic Cpr65Aw - chr3L 6142742 intergenic Cpr65Aw - chr3L_6_6140001 chr3L_6140001 RAL-737 1115 chr3L 6220913 6220942 chr3L 6230065 6230073 roo 14 9150 8.5 10.5 9.5 1.3 9160 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225493 intergenic not near genes chr3L 6230073 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-737 1116 chr3L 6220944 6220948 chr3L 6230064 6230100 roo 4 9134 5.0 9.0 7.0 0.5 9156 chr3L 6220944 5` UTR pncr008:3L + chr3L 6225522 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-737 1117 chr3L 6233314 6233341 chr3L 6233435 6233462 7 118 3.0 8.0 5.5 1.1 148 chr3L 6233314 5` UTR BG642312 - chr3L 6233388 intergenic BG642312 -,CG42714 - chr3L 6233462 intergenic CG42714 -,BG642312 - chr3L_7_6230001 chr3L_6230001 RAL-737 1118 chr3L 6335017 6335030 chr3L 6335486 6335501 297 6 469 4.5 7.5 6.0 0.9 484 chr3L 6335017 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335501 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-737 1119 chr3L 6405657 6405686 chr3L 6432121 6432150 roo 12 26464 2.5 6.0 4.2 2.3 26493 chr3L 6405657 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432150 intron CG42747 + chr3L_12_6415001 chr3L_6415001 RAL-737 1120 chr3L 6652096 6652108 chr3L 6652160 6652162 8 70 14.0 14.0 14.0 0.5 66 chr3L 6652096 intergenic not near genes chr3L 6652129 intergenic not near genes chr3L 6652162 intergenic not near genes chr3L_8_6650001 chr3L_6650001 RAL-737 1121 chr3L 6667507 6667512 chr3L 6667561 6667591 5 69 20.0 16.5 18.2 0.3 84 chr3L 6667507 exon CG32395 - chr3L 6667549 exon CG32395 - chr3L 6667591 exon CG32395 - chr3L_5_6665001 chr3L_6665001 RAL-737 1122 chr3L 6781126 6781137 chr3L 6783139 6783150 Doc 7 2013 8.5 0.0 4.2 1.3 2024 chr3L 6781126 intergenic not near genes chr3L 6782138 intergenic not near genes chr3L 6783150 intergenic not near genes chr3L_7_6780001 chr3L_6780001 RAL-737 1123 chr3L 6855934 6855952 chr3L 6860718 6860728 Doc 4 4779 2.0 3.5 2.8 1.1 4794 chr3L 6855934 intergenic not near genes chr3L 6858331 intergenic not near genes chr3L 6860728 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-737 1124 chr3L 6887520 6887551 chr3L 6895012 6895043 roo 12 7492 4.5 4.0 4.2 2.3 7523 chr3L 6887520 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_12_6890001 chr3L_6890001 RAL-737 1125 chr3L 6934335 6934361 chr3L 6934446 6934454 5 107 4.0 1.5 2.8 1.3 119 chr3L 6934335 exon CG14820 + chr3L 6934394 intron CG14820 + chr3L 6934454 intron CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-737 1126 chr3L 6955792 6955808 chr3L 6955872 6955882 4 78 13.0 7.5 10.2 0.4 90 chr3L 6955792 5` UTR CG10077 - chr3L 6955837 5` UTR CG10077 - chr3L 6955882 5` UTR CG10077 - chr3L_4_6955001 chr3L_6955001 RAL-737 1127 chr3L 6994886 6994917 chr3L 6995497 6995528 BS 6 611 0.5 5.0 2.8 1.6 642 chr3L 6994886 intergenic bin + chr3L 6995207 intergenic not near genes chr3L 6995528 intergenic not near genes chr3L_6_6995001 chr3L_6995001 RAL-737 1128 chr3L 7033060 7033088 chr3L 7033149 7033152 4 81 3.5 6.0 4.8 0.7 92 chr3L 7033060 intron Mp + chr3L 7033106 intron Mp + chr3L 7033152 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-737 1129 chr3L 7090023 7090055 chr3L 7090104 7090136 12 80 6.0 3.5 4.8 2.1 113 chr3L 7090023 intergenic not near genes chr3L 7090080 intergenic not near genes chr3L 7090136 intergenic not near genes chr3L_12_7090001 chr3L_7090001 RAL-737 1130 chr3L 7100433 7100466 chr3L 7100517 7100548 10 83 4.0 8.0 6.0 1.4 115 chr3L 7100433 intron form3 + chr3L 7100490 intron form3 + chr3L 7100548 intron form3 + chr3L_10_7100001 chr3L_7100001 RAL-737 1131 chr3L 7112596 7112612 chr3L 7112683 7112697 6 86 10.5 16.5 13.5 0.4 101 chr3L 7112596 intron form3 + chr3L 7112646 intron form3 + chr3L 7112697 intron form3 + chr3L_6_7110001 chr3L_7110001 RAL-737 1132 chr3L 7187403 7187421 chr3L 7187485 7187494 4 80 0.5 0.5 0.5 2.7 91 chr3L 7187403 intron Dscam2 - chr3L 7187448 intron Dscam2 - chr3L 7187494 intron Dscam2 - chr3L_4_7185001 chr3L_7185001 RAL-737 1133 chr3L 7244952 7244959 chr3L 7245028 7245048 4 84 13.0 11.0 12.0 0.3 96 chr3L 7244952 exon mei-P22 + chr3L 7245000 exon mei-P22 + chr3L 7245048 exon mei-P22 + chr3L_4_7240001 chr3L_7240001 RAL-737 1134 chr3L 7276209 7276242 chr3L 7276292 7276325 6 82 12.0 16.5 14.2 0.4 116 chr3L 7276209 intron unc-13-4A - chr3L 7276267 intron unc-13-4A - chr3L 7276325 intron unc-13-4A - chr3L_6_7275001 chr3L_7275001 RAL-737 1135 chr3L 7377318 7377341 chr3L 7380423 7380446 297 7 3102 6.5 8.0 7.2 0.9 3128 chr3L 7377318 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380446 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-737 1136 chr3L 7426009 7426045 chr3L 7426391 7426393 13 377 2.5 5.5 4.0 2.6 384 chr3L 7426009 intron CG42458 + chr3L 7426201 intron CG42458 + chr3L 7426393 intron CG42458 + chr3L_13_7425001 chr3L_7425001 RAL-737 1137 chr3L 7450688 7450713 chr3L 7450771 7450796 8 83 4.5 0.0 2.2 2.5 108 chr3L 7450688 intron CG42458 + chr3L 7450742 intron CG42458 + chr3L 7450796 intron CG42458 + chr3L_8_7450001 chr3L_7450001 RAL-737 1138 chr3L 7462965 7462990 chr3L 7463038 7463069 6 76 11.0 9.5 10.2 0.5 104 chr3L 7462965 intergenic not near genes chr3L 7463017 intergenic not near genes chr3L 7463069 intergenic not near genes chr3L_6_7460001 chr3L_7460001 RAL-737 1139 chr3L 7498760 7498765 chr3L 7503536 7503542 F-element 4 4777 9.5 4.0 6.8 0.5 4782 chr3L 7498760 5` UTR CG8539 - chr3L 7501151 intergenic not near genes chr3L 7503542 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-737 1140 chr3L 7498781 7498792 chr3L 7503530 7503569 F-element 4 4763 2.0 3.5 2.8 1.1 4788 chr3L 7498781 5` UTR CG8539 - chr3L 7501175 intergenic not near genes chr3L 7503569 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-737 1141 chr3L 7505432 7505436 chr3L 7505508 7505512 5 76 2.5 8.5 5.5 0.8 80 chr3L 7505432 intergenic CG7548 - chr3L 7505472 intergenic CG7548 - chr3L 7505512 intergenic CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-737 1142 chr3L 7572281 7572303 chr3L 7572366 7572390 4 86 12.0 11.5 11.8 0.3 109 chr3L 7572281 intergenic not near genes chr3L 7572336 intergenic not near genes chr3L 7572390 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-737 1143 chr3L 7695496 7695525 chr3L 7695576 7695582 8 79 6.5 9.0 7.8 0.9 86 chr3L 7695496 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7695539 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7695582 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L_8_7695001 chr3L_7695001 RAL-737 1144 chr3L 7715144 7715166 chr3L 7715285 7715302 6 140 12.0 15.5 13.8 0.4 158 chr3L 7715144 intron,intron CG32373 +,Ank2 - chr3L 7715223 intron,intron CG32373 +,Ank2 - chr3L 7715302 intron,intron CG32373 +,Ank2 - chr3L_6_7715001 chr3L_7715001 RAL-737 1145 chr3L 7740891 7740925 chr3L 7740967 7741000 8 70 22.0 21.5 21.8 0.4 109 chr3L 7740891 intron,intron CG32373 +,Snmp2 - chr3L 7740946 intron,intron CG32373 +,Snmp2 - chr3L 7741000 intron,intron CG32373 +,Snmp2 - chr3L_8_7740001 chr3L_7740001 RAL-737 1146 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 26.5 9.5 18.0 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-737 1147 chr3L 7793711 7793742 chr3L 7800763 7800794 297 17 7050 4.0 3.5 3.8 3.5 7083 chr3L 7793711 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_17_7795001 chr3L_7795001 RAL-737 1148 chr3L 7883759 7883770 chr3L 7883911 7883927 4 156 15.5 11.5 13.5 0.3 168 chr3L 7883759 intron CG32365 + chr3L 7883843 intron CG32365 + chr3L 7883927 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-737 1149 chr3L 7886529 7886539 chr3L 7889047 7889057 Stalker4 7 2518 2.5 6.0 4.2 1.3 2528 chr3L 7886529 intron CG32365 + chr3L 7887793 intron CG32365 + chr3L 7889057 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-737 1150 chr3L 7902435 7902447 chr3L 7902514 7902523 4 80 13.5 9.0 11.2 0.3 88 chr3L 7902435 intron pbl - chr3L 7902479 intron pbl - chr3L 7902523 intron pbl - chr3L_4_7900001 chr3L_7900001 RAL-737 1151 chr3L 7916831 7916853 chr3L 7926001 7926024 roo 11 9169 7.0 5.0 6.0 1.6 9193 chr3L 7916831 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926024 3` UTR syd - chr3L_11_7920001 chr3L_7920001 RAL-737 1152 chr3L 7985367 7985396 chr3L 7987690 7987720 NOF 12 2327 4.5 7.0 5.8 1.8 2353 chr3L 7985367 intron nmo + chr3L 7986544 intron nmo + chr3L 7987720 intron nmo + chr3L_12_7985001 chr3L_7985001 RAL-737 1153 chr3L 8019718 8019735 chr3L 8024119 8024151 NOF 4 4400 3.0 4.0 3.5 0.9 4433 chr3L 8019718 intron nmo + chr3L 8021934 intron nmo + chr3L 8024151 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-737 1154 chr3L 8026614 8026623 chr3L 8026692 8026701 5 77 11.5 7.5 9.5 0.5 87 chr3L 8026614 intron nmo + chr3L 8026658 intron nmo + chr3L 8026701 intron nmo + chr3L_5_8025001 chr3L_8025001 RAL-737 1155 chr3L 8149763 8149794 chr3L 8149869 8149899 5 106 0.0 6.0 3.0 1.2 136 chr3L 8149763 intron CG13676 - chr3L 8149831 intron CG13676 - chr3L 8149899 intron CG13676 - chr3L_5_8145001 chr3L_8145001 RAL-737 1156 chr3L 8295790 8295825 chr3L 8295948 8295954 16 156 2.5 5.0 3.8 3.3 164 chr3L 8295790 intergenic CG7201 - chr3L 8295872 intergenic not near genes chr3L 8295954 intergenic not near genes chr3L_16_8295001 chr3L_8295001 RAL-737 1157 chr3L 8498299 8498329 chr3L 8505763 8505796 blood 6 7465 4.0 2.0 3.0 1.5 7497 chr3L 8498299 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505796 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-737 1158 chr3L 8525880 8525906 chr3L 8525986 8526012 9 101 11.0 8.5 9.8 0.8 132 chr3L 8525880 intron foi + chr3L 8525946 intron foi + chr3L 8526012 intron foi + chr3L_9_8525001 chr3L_8525001 RAL-737 1159 chr3L 8551750 8551759 chr3L 8551833 8551842 5 83 8.0 10.5 9.2 0.5 92 chr3L 8551750 intron rhea + chr3L 8551796 intron rhea + chr3L 8551842 intron rhea + chr3L_5_8550001 chr3L_8550001 RAL-737 1160 chr3L 8643576 8643604 chr3L 8643652 8643659 4 70 5.5 6.0 5.8 0.6 83 chr3L 8643576 3` UTR Cpr66D + chr3L 8643618 intergenic Cpr66D + chr3L 8643659 intergenic Cpr66D + chr3L_4_8640001 chr3L_8640001 RAL-737 1161 chr3L 8791276 8791290 chr3L 8796696 8796710 I-element 5 5420 7.0 0.5 3.8 1.0 5434 chr3L 8791276 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796710 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-737 1162 chr3L 8832407 8832428 chr3L 8832499 8832521 5 89 15.5 15.5 15.5 0.3 114 chr3L 8832407 intron dally + chr3L 8832464 intron dally + chr3L 8832521 intron dally + chr3L_5_8830001 chr3L_8830001 RAL-737 1163 chr3L 8832429 8832435 chr3L 8832498 8832528 7 87 13.0 16.0 14.5 0.5 99 chr3L 8832429 intron dally + chr3L 8832478 intron dally + chr3L 8832528 intron dally + chr3L_7_8830001 chr3L_8830001 RAL-737 1164 chr3L 8861534 8861540 chr3L 8861619 8861631 7 90 3.0 3.5 3.2 1.7 97 chr3L 8861534 intron dally + chr3L 8861582 intron dally + chr3L 8861631 intron dally + chr3L_7_8860001 chr3L_8860001 RAL-737 1165 chr3L 9003953 9003978 chr3L 9004038 9004053 5 82 3.0 6.0 4.5 0.9 100 chr3L 9003953 intergenic not near genes chr3L 9004003 intergenic not near genes chr3L 9004053 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-737 1166 chr3L 9024507 9024531 chr3L 9024587 9024611 6 80 9.0 10.0 9.5 0.6 104 chr3L 9024507 intergenic not near genes chr3L 9024559 intergenic not near genes chr3L 9024611 intergenic not near genes chr3L_6_9020001 chr3L_9020001 RAL-737 1167 chr3L 9024532 9024537 chr3L 9024583 9024617 4 70 8.5 10.0 9.2 0.4 85 chr3L 9024532 intergenic not near genes chr3L 9024574 intergenic not near genes chr3L 9024617 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-737 1168 chr3L 9030428 9030454 chr3L 9030507 9030533 4 79 9.5 9.5 9.5 0.4 105 chr3L 9030428 intergenic not near genes chr3L 9030480 intergenic not near genes chr3L 9030533 intergenic not near genes chr3L_4_9030001 chr3L_9030001 RAL-737 1169 chr3L 9076929 9076959 chr3L 9084489 9084497 412 13 7555 3.5 3.0 3.2 3.1 7568 chr3L 9076929 exon Tequila + chr3L 9080713 intron Tequila + chr3L 9084497 exon Tequila + chr3L_13_9080001 chr3L_9080001 RAL-737 1170 chr3L 9129194 9129224 chr3L 9129274 9129304 8 75 12.5 13.5 13.0 0.6 110 chr3L 9129194 intron bol - chr3L 9129249 intron bol - chr3L 9129304 intron bol - chr3L_8_9125001 chr3L_9125001 RAL-737 1171 chr3L 9130560 9130576 chr3L 9134321 9134331 412 4 3759 5.0 4.0 4.5 0.7 3771 chr3L 9130560 intergenic bol - chr3L 9132446 intergenic not near genes chr3L 9134331 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-737 1172 chr3L 9164695 9164731 chr3L 9166162 9166198 hobo 11 1465 4.5 2.5 3.5 2.4 1503 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_11_9165001 chr3L_9165001 RAL-737 1173 chr3L 9184869 9184894 chr3L 9184942 9184957 4 70 12.0 7.5 9.8 0.4 88 chr3L 9184869 intergenic not near genes chr3L 9184913 intergenic not near genes chr3L 9184957 intergenic not near genes chr3L_4_9180001 chr3L_9180001 RAL-737 1174 chr3L 9313026 9313027 chr3L 11777678 11777678 4 2464652 16.0 9.5 12.8 0.3 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-737 1175 chr3L 9359604 9359624 chr3L 9359695 9359715 4 91 16.0 16.0 16.0 0.2 111 chr3L 9359604 3` UTR CG32039 + chr3L 9359660 3` UTR CG32039 + chr3L 9359715 3` UTR CG32039 + chr3L_4_9355001 chr3L_9355001 RAL-737 1176 chr3L 9443507 9443536 chr3L 9445298 9445327 S-element 7 1787 4.5 4.0 4.2 1.3 1820 chr3L 9443507 intron CG33926 + chr3L 9444417 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-737 1177 chr3L 9501699 9501732 chr3L 9502184 9502218 roo 8 484 2.5 3.5 3.0 2.0 519 chr3L 9501699 intron path - chr3L 9501958 intron path - chr3L 9502218 intron path - chr3L_8_9500001 chr3L_9500001 RAL-737 1178 chr3L 9502616 9502639 chr3L 9502696 9502719 7 80 13.0 9.0 11.0 0.6 103 chr3L 9502616 intron path - chr3L 9502668 intron path - chr3L 9502719 intron path - chr3L_7_9500001 chr3L_9500001 RAL-737 1179 chr3L 9571899 9571937 chr3L 9572247 9572285 jockey 11 345 4.0 2.0 3.0 2.8 386 chr3L 9571899 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572285 intron CG42673 + chr3L_11_9570001 chr3L_9570001 RAL-737 1180 chr3L 9572296 9572334 chr3L 9572375 9572407 6 78 1.5 0.5 1.0 3.0 111 chr3L 9572296 intron CG42673 + chr3L 9572352 intron CG42673 + chr3L 9572407 intron CG42673 + chr3L_6_9570001 chr3L_9570001 RAL-737 1181 chr3L 9575909 9575945 chr3L 9580987 9580996 jockey 8 5074 7.0 4.5 5.8 1.2 5087 chr3L 9575909 intron CG42673 + chr3L 9578452 intron CG42673 + chr3L 9580996 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-737 1182 chr3L 9594231 9594258 chr3L 9594312 9594333 7 78 12.0 8.0 10.0 0.6 102 chr3L 9594231 intron CG42673 + chr3L 9594282 intron CG42673 + chr3L 9594333 intron CG42673 + chr3L_7_9590001 chr3L_9590001 RAL-737 1183 chr3L 9639040 9639057 chr3L 9639113 9639142 4 82 19.5 18.5 19.0 0.2 102 chr3L 9639040 intron fry - chr3L 9639091 intron fry - chr3L 9639142 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-737 1184 chr3L 9807010 9807033 chr3L 9807146 9807165 5 136 5.0 6.5 5.8 0.7 155 chr3L 9807010 intron CG32052 + chr3L 9807088 intron CG32052 + chr3L 9807165 intron CG32052 + chr3L_5_9805001 chr3L_9805001 RAL-737 1185 chr3L 9808105 9808122 chr3L 9808331 9808344 6 224 4.0 14.0 9.0 0.6 239 chr3L 9808105 3` UTR CG32052 + chr3L 9808224 3` UTR CG32052 + chr3L 9808344 3` UTR CG32052 + chr3L_6_9805001 chr3L_9805001 RAL-737 1186 chr3L 9858049 9858075 chr3L 9858126 9858146 11 73 14.0 12.5 13.2 0.8 97 chr3L 9858049 3` UTR CG10809 - chr3L 9858098 intron CG10809 - chr3L 9858146 intron CG10809 - chr3L_11_9855001 chr3L_9855001 RAL-737 1187 chr3L 9929679 9929701 chr3L 9938455 9938475 roo 7 8778 4.0 6.5 5.2 1.1 8796 chr3L 9929679 intron CG34356 + chr3L 9934077 intron CG34356 + chr3L 9938475 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-737 1188 chr3L 10003155 10003181 chr3L 10003252 10003278 6 96 13.0 12.5 12.8 0.4 123 chr3L 10003155 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-737 1189 chr3L 10007190 10007204 chr3L 10007293 10007307 6 103 9.0 11.0 10.0 0.5 117 chr3L 10007190 intron dpr6 + chr3L 10007248 intron dpr6 + chr3L 10007307 intron dpr6 + chr3L_6_10005001 chr3L_10005001 RAL-737 1190 chr3L 10011587 10011621 chr3L 10011669 10011703 7 81 21.0 17.5 19.2 0.3 116 chr3L 10011587 intron dpr6 + chr3L 10011645 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_7_10010001 chr3L_10010001 RAL-737 1191 chr3L 10049557 10049571 chr3L 10049621 10049650 6 76 11.0 8.5 9.8 0.6 93 chr3L 10049557 intron dpr6 + chr3L 10049604 intron dpr6 + chr3L 10049650 intron dpr6 + chr3L_6_10045001 chr3L_10045001 RAL-737 1192 chr3L 10161801 10161832 chr3L 10161932 10161963 11 129 9.5 9.5 9.5 1.0 162 chr3L 10161801 intron dpr10 - chr3L 10161882 intron dpr10 - chr3L 10161963 intron dpr10 - chr3L_11_10160001 chr3L_10160001 RAL-737 1193 chr3L 10214740 10214829 chr3L 10214818 10214917 9 96 1.0 3.0 2.0 3.0 177 chr3L 10214740 intergenic not near genes chr3L 10214828 intergenic not near genes chr3L 10214917 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-737 1194 chr3L 10222745 10222769 chr3L 10222825 10222849 4 80 2.5 7.0 4.8 0.7 104 chr3L 10222745 intron scramb1 - chr3L 10222797 intron scramb1 - chr3L 10222849 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-737 1195 chr3L 10248967 10249135 chr3L 10249045 10249184 11 71 7.0 2.0 4.5 2.0 217 chr3L 10248967 intergenic CR44540 - chr3L 10249076 intergenic CR44540 - chr3L 10249184 intergenic not near genes chr3L_11_10245001 chr3L_10245001 RAL-737 1196 chr3L 10255376 10255398 chr3L 10255474 10255496 5 98 4.0 5.5 4.8 0.9 120 chr3L 10255376 intergenic not near genes chr3L 10255436 intergenic not near genes chr3L 10255496 intergenic not near genes chr3L_5_10255001 chr3L_10255001 RAL-737 1197 chr3L 10272504 10272533 chr3L 10272610 10272617 6 103 7.0 9.0 8.0 0.7 113 chr3L 10272504 intergenic not near genes chr3L 10272560 intergenic not near genes chr3L 10272617 intergenic not near genes chr3L_6_10270001 chr3L_10270001 RAL-737 1198 chr3L 10281721 10281741 chr3L 10281839 10281859 4 116 13.5 12.0 12.8 0.3 138 chr3L 10281721 intergenic not near genes chr3L 10281790 intergenic not near genes chr3L 10281859 intergenic not near genes chr3L_4_10280001 chr3L_10280001 RAL-737 1199 chr3L 10298667 10298702 chr3L 10298754 10298789 18 84 1.0 3.5 2.2 5.6 122 chr3L 10298667 intergenic not near genes chr3L 10298728 intergenic not near genes chr3L 10298789 intergenic not near genes chr3L_18_10295001 chr3L_10295001 RAL-737 1200 chr3L 10300070 10300074 chr3L 10300174 10300178 4 104 2.5 7.0 4.8 0.7 108 chr3L 10300070 intergenic not near genes chr3L 10300124 intergenic not near genes chr3L 10300178 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-737 1201 chr3L 10308745 10308764 chr3L 10308822 10308840 4 77 6.5 4.5 5.5 0.6 95 chr3L 10308745 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308840 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-737 1202 chr3L 10308769 10308775 chr3L 10308820 10308831 8 62 4.5 4.5 4.5 1.5 62 chr3L 10308769 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308831 intergenic not near genes chr3L_8_10305001 chr3L_10305001 RAL-737 1203 chr3L 10328116 10328129 chr3L 10328228 10328241 7 112 6.5 6.0 6.2 1.0 125 chr3L 10328116 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328241 intergenic not near genes chr3L_7_10325001 chr3L_10325001 RAL-737 1204 chr3L 10383213 10383236 chr3L 10383312 10383335 5 98 13.5 11.0 12.2 0.4 122 chr3L 10383213 intergenic not near genes chr3L 10383274 intergenic not near genes chr3L 10383335 intergenic not near genes chr3L_5_10380001 chr3L_10380001 RAL-737 1205 chr3L 10414939 10414978 chr3L 10417311 10417331 Doc 13 2363 2.0 4.5 3.2 3.1 2392 chr3L 10414939 intergenic CG12362 + chr3L 10416135 intergenic not near genes chr3L 10417331 intergenic not near genes chr3L_13_10415001 chr3L_10415001 RAL-737 1206 chr3L 10417575 10417606 chr3L 10417652 10417683 14 75 4.0 4.0 4.0 2.8 108 chr3L 10417575 intergenic not near genes chr3L 10417629 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-737 1207 chr3L 10469931 10469960 chr3L 10470007 10470036 11 76 11.0 8.0 9.5 1.0 105 chr3L 10469931 intergenic not near genes chr3L 10469984 intergenic not near genes chr3L 10470036 intergenic not near genes chr3L_11_10465001 chr3L_10465001 RAL-737 1208 chr3L 10504027 10504046 chr3L 10504117 10504137 9 90 4.5 4.5 4.5 1.6 110 chr3L 10504027 intron A2bp1 + chr3L 10504082 intron A2bp1 + chr3L 10504137 intron A2bp1 + chr3L_9_10500001 chr3L_10500001 RAL-737 1209 chr3L 10520563 10520571 chr3L 10520620 10520649 6 70 4.0 12.0 8.0 0.7 86 chr3L 10520563 intron A2bp1 + chr3L 10520606 intron A2bp1 + chr3L 10520649 intron A2bp1 + chr3L_6_10520001 chr3L_10520001 RAL-737 1210 chr3L 10584279 10584299 chr3L 10584366 10584386 11 87 5.0 3.5 4.2 2.1 107 chr3L 10584279 intron A2bp1 + chr3L 10584332 intron A2bp1 + chr3L 10584386 intron A2bp1 + chr3L_11_10580001 chr3L_10580001 RAL-737 1211 chr3L 10600455 10600473 chr3L 10600537 10600545 7 80 5.5 2.5 4.0 1.4 90 chr3L 10600455 intergenic not near genes chr3L 10600500 intergenic not near genes chr3L 10600545 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-737 1212 chr3L 10614784 10614797 chr3L 10614863 10614876 6 79 0.0 3.5 1.8 2.1 92 chr3L 10614784 intergenic not near genes chr3L 10614830 intergenic not near genes chr3L 10614876 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-737 1213 chr3L 10621846 10621878 chr3L 10621933 10621965 12 85 3.5 2.0 2.8 3.2 119 chr3L 10621846 intergenic not near genes chr3L 10621906 intergenic not near genes chr3L 10621965 intergenic not near genes chr3L_12_10620001 chr3L_10620001 RAL-737 1214 chr3L 10647716 10647744 chr3L 10647816 10647820 5 95 14.0 14.0 14.0 0.3 104 chr3L 10647716 intron CG32066 - chr3L 10647768 intron CG32066 - chr3L 10647820 intron CG32066 - chr3L_5_10645001 chr3L_10645001 RAL-737 1215 chr3L 10658084 10658210 chr3L 10658154 10658337 25 102 4.5 3.5 4.0 5.0 253 chr3L 10658084 intron CG32066 - chr3L 10658210 intron CG32066 - chr3L 10658337 intron CG32066 - chr3L_25_10655001 chr3L_10655001 RAL-737 1216 chr3L 10721995 10722016 chr3L 10722077 10722098 5 82 4.0 1.0 2.5 1.4 103 chr3L 10721995 intergenic not near genes chr3L 10722046 intergenic not near genes chr3L 10722098 intergenic not near genes chr3L_5_10720001 chr3L_10720001 RAL-737 1217 chr3L 10806862 10806894 chr3L 10807230 10807240 4 362 17.0 4.5 10.8 0.3 378 chr3L 10806862 intergenic not near genes chr3L 10807051 intergenic not near genes chr3L 10807240 intergenic not near genes chr3L_4_10805001 chr3L_10805001 RAL-737 1218 chr3L 10887823 10887841 chr3L 10887919 10887937 8 96 8.5 5.5 7.0 1.0 114 chr3L 10887823 intergenic not near genes chr3L 10887880 intergenic not near genes chr3L 10887937 intergenic not near genes chr3L_8_10885001 chr3L_10885001 RAL-737 1219 chr3L 10888824 10888835 chr3L 10888936 10888946 4 112 11.5 6.0 8.8 0.4 122 chr3L 10888824 intergenic not near genes chr3L 10888885 intergenic not near genes chr3L 10888946 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-737 1220 chr3L 10888838 10888847 chr3L 10888934 10888958 4 104 11.0 5.5 8.2 0.4 120 chr3L 10888838 intergenic not near genes chr3L 10888898 intergenic not near genes chr3L 10888958 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-737 1221 chr3L 10957027 10957034 chr3L 10957103 10957109 4 76 12.0 18.0 15.0 0.2 82 chr3L 10957027 intergenic not near genes chr3L 10957068 intergenic not near genes chr3L 10957109 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-737 1222 chr3L 11087060 11087087 chr3L 11088846 11088876 S-element 5 1786 1.0 1.0 1.0 2.5 1816 chr3L 11087060 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088876 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-737 1223 chr3L 11105312 11105322 chr3L 11106999 11107023 X-element 4 1702 11.0 5.0 8.0 0.4 1711 chr3L 11105312 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107023 3` UTR CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-737 1224 chr3L 11107653 11107676 chr3L 11107939 11107962 6 285 10.0 12.5 11.2 0.5 309 chr3L 11107653 intergenic CG32073 - chr3L 11107808 intergenic CG32073 -,CG12522 + chr3L 11107962 intergenic CG12522 +,CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-737 1225 chr3L 11135529 11135806 chr3L 11135759 11135890 9 97 2.5 3.0 2.8 2.4 361 chr3L 11135529 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135890 intergenic CG32082 +,CG14143 + chr3L_9_11135001 chr3L_11135001 RAL-737 1226 chr3L 11145540 11145557 chr3L 11145630 11145647 5 90 0.5 5.0 2.8 1.3 107 chr3L 11145540 intron CG32082 + chr3L 11145594 intron CG32082 + chr3L 11145647 intron CG32082 + chr3L_5_11145001 chr3L_11145001 RAL-737 1227 chr3L 11157830 11157850 chr3L 11157907 11157907 4 72 9.5 12.0 10.8 0.3 77 chr3L 11157830 intron CG32082 + chr3L 11157868 intron CG32082 + chr3L 11157907 intron CG32082 + chr3L_4_11155001 chr3L_11155001 RAL-737 1228 chr3L 11157851 11157857 chr3L 11157905 11157929 4 65 10.0 11.5 10.8 0.3 78 chr3L 11157851 intron CG32082 + chr3L 11157890 intron CG32082 + chr3L 11157929 intron CG32082 + chr3L_4_11155001 chr3L_11155001 RAL-737 1229 chr3L 11217510 11217536 chr3L 11217593 11217619 5 83 11.0 12.5 11.8 0.4 109 chr3L 11217510 intron CG42671 + chr3L 11217564 intron CG42671 + chr3L 11217619 intron CG42671 + chr3L_5_11215001 chr3L_11215001 RAL-737 1230 chr3L 11241783 11241790 chr3L 11241865 11241872 4 82 3.0 2.0 2.5 1.1 89 chr3L 11241783 intergenic not near genes chr3L 11241828 intergenic not near genes chr3L 11241872 intergenic not near genes chr3L_4_11240001 chr3L_11240001 RAL-737 1231 chr3L 11264462 11264499 chr3L 11271414 11271422 17.6 8 6948 3.0 4.5 3.8 1.7 6960 chr3L 11264462 intergenic not near genes chr3L 11267942 intergenic not near genes chr3L 11271422 intergenic not near genes chr3L_8_11265001 chr3L_11265001 RAL-737 1232 chr3L 11271682 11271700 chr3L 11271766 11271783 5 84 7.0 9.5 8.2 0.5 101 chr3L 11271682 intergenic not near genes chr3L 11271732 intergenic not near genes chr3L 11271783 intergenic not near genes chr3L_5_11270001 chr3L_11270001 RAL-737 1233 chr3L 11432910 11432919 chr3L 11432989 11432998 5 79 2.5 3.5 3.0 1.2 88 chr3L 11432910 intergenic not near genes chr3L 11432954 intergenic not near genes chr3L 11432998 intergenic not near genes chr3L_5_11430001 chr3L_11430001 RAL-737 1234 chr3L 11432920 11432938 chr3L 11432986 11432995 8 71 2.0 3.5 2.8 2.1 75 chr3L 11432920 intergenic not near genes chr3L 11432958 intergenic not near genes chr3L 11432995 intergenic not near genes chr3L_8_11430001 chr3L_11430001 RAL-737 1235 chr3L 11435562 11435588 chr3L 11435728 11435756 16 167 4.0 4.5 4.2 3.1 194 chr3L 11435562 intergenic CG6149 -,CR44548 + chr3L 11435659 5` UTR CR44548 + chr3L 11435756 5` UTR CR44548 + chr3L_16_11435001 chr3L_11435001 RAL-737 1236 chr3L 11483797 11483829 chr3L 11483874 11483881 8 71 14.0 14.0 14.0 0.5 84 chr3L 11483797 intergenic not near genes chr3L 11483839 intergenic not near genes chr3L 11483881 intergenic not near genes chr3L_8_11480001 chr3L_11480001 RAL-737 1237 chr3L 11511395 11511417 chr3L 11511472 11511498 6 78 13.5 14.0 13.8 0.4 103 chr3L 11511395 intergenic not near genes chr3L 11511446 intergenic not near genes chr3L 11511498 intergenic not near genes chr3L_6_11510001 chr3L_11510001 RAL-737 1238 chr3L 11564801 11564812 chr3L 11572410 11572413 412 5 7608 2.0 3.5 2.8 1.3 7612 chr3L 11564801 exon CG33267 + chr3L 11568607 intron CG33267 + chr3L 11572413 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-737 1239 chr3L 11600789 11600822 chr3L 11600897 11600930 7 108 11.0 9.5 10.2 0.6 141 chr3L 11600789 intron CG7368 + chr3L 11600860 intron CG7368 + chr3L 11600930 intron CG7368 + chr3L_7_11600001 chr3L_11600001 RAL-737 1240 chr3L 11633538 11633569 chr3L 11633769 11633801 6 232 7.5 2.5 5.0 1.0 263 chr3L 11633538 intron CG32091 + chr3L 11633670 intron CG32091 + chr3L 11633801 intron CG32091 + chr3L_6_11630001 chr3L_11630001 RAL-737 1241 chr3L 11676795 11676831 chr3L 11676877 11676891 9 71 3.0 6.5 4.8 1.6 96 chr3L 11676795 intron CG32085 - chr3L 11676843 intron CG32085 - chr3L 11676891 intron CG32085 - chr3L_9_11675001 chr3L_11675001 RAL-737 1242 chr3L 11723082 11723114 chr3L 11727877 11727909 Doc 9 4794 2.0 5.5 3.8 1.9 4827 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_9_11725001 chr3L_11725001 RAL-737 1243 chr3L 11744011 11744045 chr3L 11744119 11744138 17 104 5.5 1.0 3.2 4.0 127 chr3L 11744011 exon CG6024 - chr3L 11744074 intron CG6024 - chr3L 11744138 intron CG6024 - chr3L_17_11740001 chr3L_11740001 RAL-737 1244 chr3L 11757916 11757928 chr3L 11758013 11758025 6 96 7.5 0.0 3.8 1.2 109 chr3L 11757916 intron CG6024 - chr3L 11757970 intron CG6024 - chr3L 11758025 intron CG6024 - chr3L_6_11755001 chr3L_11755001 RAL-737 1245 chr3L 11811456 11811481 chr3L 11811534 11811553 8 76 6.5 8.5 7.5 0.9 97 chr3L 11811456 intron CG42255 - chr3L 11811504 intron CG42255 - chr3L 11811553 exon CG42255 - chr3L_8_11810001 chr3L_11810001 RAL-737 1246 chr3L 11816794 11816815 chr3L 11816885 11816916 7 92 3.5 1.0 2.2 2.2 122 chr3L 11816794 3` UTR CG5946 - chr3L 11816855 3` UTR CG5946 - chr3L 11816916 3` UTR CG5946 - chr3L_7_11815001 chr3L_11815001 RAL-737 1247 chr3L 11849333 11849356 chr3L 11849433 11849454 12 97 2.0 4.5 3.2 2.9 121 chr3L 11849333 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849454 intergenic not near genes chr3L_12_11845001 chr3L_11845001 RAL-737 1248 chr3L 11943494 11943519 chr3L 11943595 11943620 11 101 3.0 10.0 6.5 1.5 126 chr3L 11943494 intergenic Rpt4R +,CG5883 - chr3L 11943557 intergenic Rpt4R +,CG5883 - chr3L 11943620 intergenic CG5883 -,Rpt4R + chr3L_11_11940001 chr3L_11940001 RAL-737 1249 chr3L 12013911 12013938 chr3L 12014002 12014029 18 88 3.5 1.5 2.5 5.1 118 chr3L 12013911 intron rols - chr3L 12013970 intron rols - chr3L 12014029 intron rols - chr3L_18_12010001 chr3L_12010001 RAL-737 1250 chr3L 12046082 12046097 chr3L 12046160 12046175 5 78 15.0 16.0 15.5 0.3 93 chr3L 12046082 intron rols - chr3L 12046128 intron rols - chr3L 12046175 intron rols - chr3L_5_12045001 chr3L_12045001 RAL-737 1251 chr3L 12046098 12046115 chr3L 12046159 12046193 12 69 12.5 16.0 14.2 0.8 95 chr3L 12046098 intron rols - chr3L 12046146 intron rols - chr3L 12046193 intron rols - chr3L_12_12045001 chr3L_12045001 RAL-737 1252 chr3L 12052730 12052733 chr3L 12052819 12052822 4 89 11.0 14.0 12.5 0.3 92 chr3L 12052730 intron rols - chr3L 12052776 intron rols - chr3L 12052822 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-737 1253 chr3L 12075426 12075459 chr3L 12075515 12075526 8 86 5.0 0.0 2.5 2.3 100 chr3L 12075426 intron Sema-5c - chr3L 12075476 intron Sema-5c - chr3L 12075526 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-737 1254 chr3L 12089082 12089109 chr3L 12089162 12089189 13 79 5.0 5.5 5.2 2.1 107 chr3L 12089082 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089189 3` UTR CG17154 + chr3L_13_12085001 chr3L_12085001 RAL-737 1255 chr3L 12092399 12092421 chr3L 12092476 12092497 5 77 1.0 3.5 2.2 1.6 98 chr3L 12092399 intergenic not near genes chr3L 12092448 intergenic not near genes chr3L 12092497 intergenic not near genes chr3L_5_12090001 chr3L_12090001 RAL-737 1256 chr3L 12119759 12119791 chr3L 12119856 12119888 20 96 4.0 3.5 3.8 4.2 129 chr3L 12119759 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119888 intergenic ssp +,CG11560 + chr3L_20_12115001 chr3L_12115001 RAL-737 1257 chr3L 12286821 12286833 chr3L 12286901 12286913 4 80 4.0 9.0 6.5 0.5 92 chr3L 12286821 intergenic not near genes chr3L 12286867 intergenic not near genes chr3L 12286913 intergenic not near genes chr3L_4_12285001 chr3L_12285001 RAL-737 1258 chr3L 12369544 12369555 chr3L 12369634 12369645 4 90 13.0 12.5 12.8 0.3 101 chr3L 12369544 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369645 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-737 1259 chr3L 12369557 12369569 chr3L 12369627 12369646 6 82 9.5 12.5 11.0 0.5 89 chr3L 12369557 intron Ncc69 - chr3L 12369602 intron Ncc69 - chr3L 12369646 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-737 1260 chr3L 12460091 12460341 chr3L 12460171 12460418 11 77 0.5 1.0 0.8 6.1 327 chr3L 12460091 intergenic not near genes chr3L 12460254 intergenic not near genes chr3L 12460418 intergenic not near genes chr3L_11_12460001 chr3L_12460001 RAL-737 1261 chr3L 12504110 12504138 chr3L 12504193 12504222 4 84 1.0 5.0 3.0 1.0 112 chr3L 12504110 intergenic vih +,CG10646 - chr3L 12504166 intergenic vih +,CG10646 - chr3L 12504222 intergenic vih +,CG10646 - chr3L_4_12500001 chr3L_12500001 RAL-737 1262 chr3L 12578045 12578079 chr3L 12578133 12578143 8 81 1.0 1.5 1.2 3.6 98 chr3L 12578045 intergenic not near genes chr3L 12578094 intergenic not near genes chr3L 12578143 intergenic not near genes chr3L_8_12575001 chr3L_12575001 RAL-737 1263 chr3L 12626154 12626164 chr3L 12626263 12626273 6 109 3.5 4.5 4.0 1.2 119 chr3L 12626154 intergenic not near genes chr3L 12626214 intergenic not near genes chr3L 12626273 intergenic not near genes chr3L_6_12625001 chr3L_12625001 RAL-737 1264 chr3L 12643262 12643291 chr3L 12643429 12643458 6 164 4.0 10.5 7.2 0.7 196 chr3L 12643262 intron CR32111 + chr3L 12643360 intron CR32111 + chr3L 12643458 intron CR32111 + chr3L_6_12640001 chr3L_12640001 RAL-737 1265 chr3L 12647952 12647977 chr3L 12648028 12648043 7 74 1.5 4.5 3.0 1.8 91 chr3L 12647952 5` UTR CR32111 + chr3L 12647998 5` UTR CR32111 + chr3L 12648043 5` UTR CR32111 + chr3L_7_12645001 chr3L_12645001 RAL-737 1266 chr3L 12706643 12706656 chr3L 12706770 12706783 7 127 5.0 4.5 4.8 1.2 140 chr3L 12706643 intron mirr + chr3L 12706713 intron mirr + chr3L 12706783 intron mirr + chr3L_7_12705001 chr3L_12705001 RAL-737 1267 chr3L 12874928 12874962 chr3L 12877220 12877254 jockey 25 2289 2.5 7.0 4.8 4.3 2326 chr3L 12874928 intergenic not near genes chr3L 12876091 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_25_12875001 chr3L_12875001 RAL-737 1268 chr3L 12919295 12919306 chr3L 12924747 12924771 Rt1c 4 5465 8.0 6.5 7.2 0.5 5476 chr3L 12919295 intergenic not near genes chr3L 12922033 intergenic not near genes chr3L 12924771 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-737 1269 chr3L 12957786 12957787 chr3L 12962267 12962269 copia 4 4482 14.0 6.5 10.2 0.4 4483 chr3L 12957786 intergenic not near genes chr3L 12960028 intergenic not near genes chr3L 12962269 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-737 1270 chr3L 12957795 12957820 chr3L 12962266 12962296 copia 14 4480 6.5 6.5 6.5 1.9 4501 chr3L 12957795 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962296 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-737 1271 chr3L 13074037 13074070 chr3L 13074169 13074198 11 132 7.5 7.0 7.2 1.3 161 chr3L 13074037 intergenic not near genes chr3L 13074118 intergenic not near genes chr3L 13074198 intergenic not near genes chr3L_11_13070001 chr3L_13070001 RAL-737 1272 chr3L 13085057 13085080 chr3L 13085136 13085159 6 78 8.5 9.5 9.0 0.6 102 chr3L 13085057 intergenic not near genes chr3L 13085108 intergenic not near genes chr3L 13085159 intergenic not near genes chr3L_6_13085001 chr3L_13085001 RAL-737 1273 chr3L 13182448 13182462 chr3L 13182526 13182540 4 78 10.0 6.0 8.0 0.4 92 chr3L 13182448 intergenic not near genes chr3L 13182494 intergenic not near genes chr3L 13182540 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-737 1274 chr3L 13264793 13264802 chr3L 13264869 13264878 4 76 11.5 5.0 8.2 0.4 85 chr3L 13264793 intron caps + chr3L 13264836 intron caps + chr3L 13264878 intron caps + chr3L_4_13260001 chr3L_13260001 RAL-737 1275 chr3L 13296519 13296541 chr3L 13296610 13296632 4 91 21.0 23.0 22.0 0.2 113 chr3L 13296519 intergenic Sfp70A4 -,CR45253 + chr3L 13296576 3` UTR Sfp70A4 - chr3L 13296632 3` UTR Sfp70A4 - chr3L_4_13295001 chr3L_13295001 RAL-737 1276 chr3L 13301263 13301280 chr3L 13301345 13301349 5 79 4.5 4.5 4.5 0.9 86 chr3L 13301263 intergenic SP + chr3L 13301306 intergenic SP + chr3L 13301349 intergenic SP + chr3L_5_13300001 chr3L_13300001 RAL-737 1277 chr3L 13338634 13338657 chr3L 13338711 13338733 5 77 14.0 14.5 14.2 0.3 99 chr3L 13338634 intergenic not near genes chr3L 13338684 intergenic not near genes chr3L 13338733 intergenic not near genes chr3L_5_13335001 chr3L_13335001 RAL-737 1278 chr3L 13361774 13361984 chr3L 13361859 13362077 6 89 20.0 12.0 16.0 0.4 303 chr3L 13361774 intergenic not near genes chr3L 13361926 intergenic not near genes chr3L 13362077 intergenic not near genes chr3L_6_13360001 chr3L_13360001 RAL-737 1279 chr3L 13477011 13477029 chr3L 13477088 13477106 12 77 1.0 2.0 1.5 4.8 95 chr3L 13477011 intergenic not near genes chr3L 13477058 intergenic stv + chr3L 13477106 intergenic stv + chr3L_12_13475001 chr3L_13475001 RAL-737 1280 chr3L 13525164 13525190 chr3L 13532960 13532986 roo 14 7794 9.0 8.5 8.8 1.4 7822 chr3L 13525164 intergenic not near genes chr3L 13529075 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_14_13525001 chr3L_13525001 RAL-737 1281 chr3L 13626698 13626719 chr3L 13626782 13626792 4 81 4.0 5.0 4.5 0.7 94 chr3L 13626698 intron bru-3 - chr3L 13626745 intron bru-3 - chr3L 13626792 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-737 1282 chr3L 13633414 13633444 chr3L 13633767 13633778 9 347 8.0 10.0 9.0 0.9 364 chr3L 13633414 intron bru-3 - chr3L 13633596 intron bru-3 - chr3L 13633778 intron bru-3 - chr3L_9_13630001 chr3L_13630001 RAL-737 1283 chr3L 13648886 13648922 chr3L 13648976 13649012 7 87 5.0 4.5 4.8 1.2 126 chr3L 13648886 intron bru-3 - chr3L 13648949 intron bru-3 - chr3L 13649012 intron bru-3 - chr3L_7_13645001 chr3L_13645001 RAL-737 1284 chr3L 13677533 13677750 chr3L 13677610 13677906 9 84 9.5 3.5 6.5 1.2 373 chr3L 13677533 intron bru-3 - chr3L 13677720 intron bru-3 - chr3L 13677906 intron bru-3 - chr3L_9_13675001 chr3L_13675001 RAL-737 1285 chr3L 13703435 13703460 chr3L 13703521 13703546 5 86 20.5 20.0 20.2 0.2 111 chr3L 13703435 intron bru-3 - chr3L 13703490 intron bru-3 - chr3L 13703546 intron bru-3 - chr3L_5_13700001 chr3L_13700001 RAL-737 1286 chr3L 13774637 13774669 chr3L 13774723 13774730 5 76 5.5 4.5 5.0 0.8 93 chr3L 13774637 intron bru-3 - chr3L 13774684 intron bru-3 - chr3L 13774730 intron bru-3 - chr3L_5_13770001 chr3L_13770001 RAL-737 1287 chr3L 13804545 13804560 chr3L 13822831 13822845 roo 6 18285 5.0 3.5 4.2 1.2 18300 chr3L 13804545 intergenic not near genes chr3L 13813695 intergenic not near genes chr3L 13822845 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-737 1288 chr3L 13837269 13837293 chr3L 13837346 13837370 10 74 4.0 4.0 4.0 2.0 101 chr3L 13837269 intergenic CG43184 + chr3L 13837320 intergenic CG43184 + chr3L 13837370 intergenic CG43184 + chr3L_10_13835001 chr3L_13835001 RAL-737 1289 chr3L 13838940 13838962 chr3L 13839158 13839180 4 217 4.0 28.5 16.2 0.2 240 chr3L 13838940 intergenic not near genes chr3L 13839060 intergenic not near genes chr3L 13839180 intergenic not near genes chr3L_4_13835001 chr3L_13835001 RAL-737 1290 chr3L 13954150 13954178 chr3L 13954238 13954245 8 82 7.0 0.0 3.5 1.8 95 chr3L 13954150 intron CG32137 + chr3L 13954198 intron CG32137 + chr3L 13954245 intron CG32137 + chr3L_8_13950001 chr3L_13950001 RAL-737 1291 chr3L 14175354 14175381 chr3L 14175502 14175529 13 148 3.0 3.5 3.2 3.1 175 chr3L 14175354 intergenic D - chr3L 14175442 intergenic D - chr3L 14175529 intergenic D - chr3L_13_14175001 chr3L_14175001 RAL-737 1292 chr3L 14185157 14185185 chr3L 14185232 14185261 11 74 3.5 4.5 4.0 2.2 104 chr3L 14185157 intergenic not near genes chr3L 14185209 intergenic not near genes chr3L 14185261 intergenic not near genes chr3L_11_14185001 chr3L_14185001 RAL-737 1293 chr3L 14193166 14193192 chr3L 14193484 14193491 14 315 5.0 3.5 4.2 2.7 325 chr3L 14193166 intron nuf + chr3L 14193328 intron nuf + chr3L 14193491 intron nuf + chr3L_14_14190001 chr3L_14190001 RAL-737 1294 chr3L 14234840 14234855 chr3L 14234937 14234952 4 97 6.0 6.0 6.0 0.6 112 chr3L 14234840 intergenic CG34244 -,CG7924 + chr3L 14234896 intergenic CG34244 -,CG7924 + chr3L 14234952 intergenic CG34244 -,CG7924 + chr3L_4_14230001 chr3L_14230001 RAL-737 1295 chr3L 14245584 14245594 chr3L 14245659 14245688 1360 7 88 3.5 2.5 3.0 1.8 104 chr3L 14245584 3` UTR CR44561 - chr3L 14245636 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-737 1296 chr3L 14282593 14282604 chr3L 14282669 14282684 4 79 5.0 4.0 4.5 0.7 91 chr3L 14282593 intron fz + chr3L 14282638 intron fz + chr3L 14282684 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-737 1297 chr3L 14296009 14296016 chr3L 14296480 14296502 roo 7 481 9.0 8.0 8.5 0.7 493 chr3L 14296009 intron fz + chr3L 14296256 intron fz + chr3L 14296502 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-737 1298 chr3L 14326967 14326997 chr3L 14327103 14327133 9 135 2.0 8.0 5.0 1.5 166 chr3L 14326967 intron fz + chr3L 14327050 intron fz + chr3L 14327133 intron fz + chr3L_9_14325001 chr3L_14325001 RAL-737 1299 chr3L 14338300 14338326 chr3L 14338396 14338400 6 92 2.5 3.5 3.0 1.5 100 chr3L 14338300 intron fz + chr3L 14338350 intron fz + chr3L 14338400 intron fz + chr3L_6_14335001 chr3L_14335001 RAL-737 1300 chr3L 14381784 14381816 chr3L 14381865 14381893 5 76 0.5 0.5 0.5 3.3 109 chr3L 14381784 intergenic CG43120 + chr3L 14381838 intergenic CG43120 + chr3L 14381893 intergenic CG43120 + chr3L_5_14380001 chr3L_14380001 RAL-737 1301 chr3L 14455364 14455398 chr3L 14455445 14455457 9 73 1.5 0.5 1.0 4.5 93 chr3L 14455364 intron bbg - chr3L 14455410 intron bbg - chr3L 14455457 intron bbg - chr3L_9_14455001 chr3L_14455001 RAL-737 1302 chr3L 14462884 14462906 chr3L 14462972 14462994 9 87 1.0 2.5 1.8 3.2 110 chr3L 14462884 intron bbg - chr3L 14462939 intron bbg - chr3L 14462994 intron bbg - chr3L_9_14460001 chr3L_14460001 RAL-737 1303 chr3L 14468446 14468477 chr3L 14473652 14473683 copia 9 5206 2.0 6.5 4.2 1.7 5237 chr3L 14468446 intron bbg - chr3L 14471064 intron bbg - chr3L 14473683 intron bbg - chr3L_9_14470001 chr3L_14470001 RAL-737 1304 chr3L 14486137 14486170 chr3L 14486214 14486247 13 76 0.0 6.5 3.2 3.1 110 chr3L 14486137 intron bbg - chr3L 14486192 intron bbg - chr3L 14486247 intron bbg - chr3L_13_14485001 chr3L_14485001 RAL-737 1305 chr3L 14543642 14543656 chr3L 14543787 14543790 4 142 1.5 3.0 2.2 1.2 148 chr3L 14543642 intron CG9238 - chr3L 14543716 intron CG9238 - chr3L 14543790 intron CG9238 - chr3L_4_14540001 chr3L_14540001 RAL-737 1306 chr3L 14546605 14546818 chr3L 14546686 14546893 12 78 0.0 5.0 2.5 3.4 288 chr3L 14546605 intron CG9238 - chr3L 14546749 intron CG9238 - chr3L 14546893 intron CG9238 - chr3L_12_14545001 chr3L_14545001 RAL-737 1307 chr3L 14549571 14549596 chr3L 14549665 14549690 11 90 4.0 6.5 5.2 1.8 119 chr3L 14549571 intron CG9238 - chr3L 14549630 intron CG9238 - chr3L 14549690 intron CG9238 - chr3L_11_14545001 chr3L_14545001 RAL-737 1308 chr3L 14590344 14590376 chr3L 14590431 14590462 8 84 3.5 3.0 3.2 1.9 118 chr3L 14590344 intron HGTX - chr3L 14590403 intron HGTX - chr3L 14590462 intron HGTX - chr3L_8_14590001 chr3L_14590001 RAL-737 1309 chr3L 14690384 14690397 chr3L 14690791 14690804 6 407 7.5 6.0 6.8 0.8 420 chr3L 14690384 intron ome + chr3L 14690594 intron ome + chr3L 14690804 intron ome + chr3L_6_14690001 chr3L_14690001 RAL-737 1310 chr3L 14690399 14690402 chr3L 14690781 14690809 4 390 6.5 4.5 5.5 0.6 410 chr3L 14690399 intron ome + chr3L 14690604 intron ome + chr3L 14690809 intron ome + chr3L_4_14690001 chr3L_14690001 RAL-737 1311 chr3L 14724814 14724833 chr3L 14724897 14724900 7 81 0.0 4.5 2.2 2.2 86 chr3L 14724814 intron ome + chr3L 14724857 intron ome + chr3L 14724900 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-737 1312 chr3L 14861802 14861826 chr3L 14861882 14861906 14 78 5.0 7.5 6.2 1.9 104 chr3L 14861802 intron CG17839 + chr3L 14861854 intron CG17839 + chr3L 14861906 intron CG17839 + chr3L_14_14860001 chr3L_14860001 RAL-737 1313 chr3L 14867621 14867650 chr3L 14867705 14867734 8 84 1.0 5.5 3.2 1.9 113 chr3L 14867621 intron CG17839 + chr3L 14867678 intron CG17839 + chr3L 14867734 intron CG17839 + chr3L_8_14865001 chr3L_14865001 RAL-737 1314 chr3L 14895033 14895059 chr3L 14895173 14895177 6 135 2.5 2.5 2.5 1.7 144 chr3L 14895033 intergenic not near genes chr3L 14895105 intergenic not near genes chr3L 14895177 intergenic not near genes chr3L_6_14895001 chr3L_14895001 RAL-737 1315 chr3L 14959989 14960016 chr3L 14960073 14960100 9 83 0.0 5.0 2.5 2.6 111 chr3L 14959989 intergenic not near genes chr3L 14960044 intergenic not near genes chr3L 14960100 intergenic not near genes chr3L_9_14960001 chr3L_14960001 RAL-737 1316 chr3L 15085047 15085083 chr3L 15086213 15086248 1360 9 1162 5.0 2.0 3.5 2.0 1201 chr3L 15085047 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086248 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-737 1317 chr3L 15151220 15151235 chr3L 15151404 15151419 5 184 5.5 2.0 3.8 1.0 199 chr3L 15151220 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151419 intron FucTA + chr3L_5_15150001 chr3L_15150001 RAL-737 1318 chr3L 15165038 15165044 chr3L 15165137 15165143 6 99 0.0 0.0 0.0 6.0 105 chr3L 15165038 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165143 intergenic not near genes chr3L_6_15165001 chr3L_15165001 RAL-737 1319 chr3L 15193702 15193723 chr3L 15193868 15193871 5 160 2.5 7.5 5.0 0.8 169 chr3L 15193702 intergenic not near genes chr3L 15193786 intergenic not near genes chr3L 15193871 intergenic not near genes chr3L_5_15190001 chr3L_15190001 RAL-737 1320 chr3L 15261886 15261918 chr3L 15261987 15261994 6 91 4.0 7.5 5.8 0.9 108 chr3L 15261886 intergenic not near genes chr3L 15261940 intergenic not near genes chr3L 15261994 intergenic not near genes chr3L_6_15260001 chr3L_15260001 RAL-737 1321 chr3L 15295768 15295795 chr3L 15298610 15298638 gypsy5 11 2841 5.0 7.5 6.2 1.5 2870 chr3L 15295768 intergenic not near genes chr3L 15297203 intergenic not near genes chr3L 15298638 intergenic Best4 + chr3L_11_15295001 chr3L_15295001 RAL-737 1322 chr3L 15406048 15406049 chr3L 15406106 15406116 4 63 4.5 7.0 5.8 0.6 68 chr3L 15406048 intergenic not near genes chr3L 15406082 intergenic not near genes chr3L 15406116 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-737 1323 chr3L 15423759 15423784 chr3L 15426603 15426628 opus 6 2844 3.5 5.5 4.5 1.1 2869 chr3L 15423759 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-737 1324 chr3L 15444655 15444685 chr3L 15444749 15444756 12 86 4.0 5.5 4.8 2.1 101 chr3L 15444655 intergenic not near genes chr3L 15444706 intergenic not near genes chr3L 15444756 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-737 1325 chr3L 15466038 15466129 chr3L 15466120 15466225 10 89 0.5 0.5 0.5 6.7 187 chr3L 15466038 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466225 intergenic not near genes chr3L_10_15465001 chr3L_15465001 RAL-737 1326 chr3L 15466520 15466552 chr3L 15466604 15466636 7 84 1.5 3.0 2.2 2.2 116 chr3L 15466520 intergenic not near genes chr3L 15466578 intergenic not near genes chr3L 15466636 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-737 1327 chr3L 15482316 15482350 chr3L 15482417 15482430 9 99 4.0 3.5 3.8 1.9 114 chr3L 15482316 intergenic not near genes chr3L 15482373 intergenic not near genes chr3L 15482430 intergenic not near genes chr3L_9_15480001 chr3L_15480001 RAL-737 1328 chr3L 15615926 15615943 chr3L 15616022 15616039 5 96 15.5 6.0 10.8 0.4 113 chr3L 15615926 intron comm3 - chr3L 15615982 intron comm3 - chr3L 15616039 intron comm3 - chr3L_5_15615001 chr3L_15615001 RAL-737 1329 chr3L 15615945 15615961 chr3L 15616019 15616057 12 91 10.0 5.0 7.5 1.4 112 chr3L 15615945 intron comm3 - chr3L 15616001 intron comm3 - chr3L 15616057 intron comm3 - chr3L_12_15615001 chr3L_15615001 RAL-737 1330 chr3L 15691415 15691442 chr3L 15691494 15691524 7 79 6.5 5.5 6.0 1.0 109 chr3L 15691415 intron CG34451 - chr3L 15691470 intron CG34451 - chr3L 15691524 intron CG34451 - chr3L_7_15690001 chr3L_15690001 RAL-737 1331 chr3L 15742960 15742985 chr3L 15743121 15743144 4 156 7.5 3.5 5.5 0.6 184 chr3L 15742960 intergenic not near genes chr3L 15743052 intergenic not near genes chr3L 15743144 intergenic not near genes chr3L_4_15740001 chr3L_15740001 RAL-737 1332 chr3L 15760687 15760711 chr3L 15760772 15760776 4 80 1.5 1.0 1.2 1.8 89 chr3L 15760687 intergenic not near genes chr3L 15760732 intergenic not near genes chr3L 15760776 intergenic not near genes chr3L_4_15760001 chr3L_15760001 RAL-737 1333 chr3L 15769439 15769444 chr3L 15769493 15769509 4 62 2.0 6.0 4.0 0.8 70 chr3L 15769439 intergenic not near genes chr3L 15769474 intergenic not near genes chr3L 15769509 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-737 1334 chr3L 15781683 15781687 chr3L 15781832 15781836 5 149 0.0 0.0 0.0 5.0 153 chr3L 15781683 intergenic not near genes chr3L 15781760 intergenic not near genes chr3L 15781836 intergenic not near genes chr3L_5_15780001 chr3L_15780001 RAL-737 1335 chr3L 15871595 15871617 chr3L 15871679 15871701 10 84 7.0 6.5 6.8 1.3 106 chr3L 15871595 intron pHCl - chr3L 15871648 intron pHCl - chr3L 15871701 intron pHCl - chr3L_10_15870001 chr3L_15870001 RAL-737 1336 chr3L 15910969 15910990 chr3L 15911100 15911121 6 132 5.0 4.0 4.5 1.1 152 chr3L 15910969 intron sff - chr3L 15911045 intron sff - chr3L 15911121 intron sff - chr3L_6_15910001 chr3L_15910001 RAL-737 1337 chr3L 15929197 15929228 chr3L 15938344 15938375 roo 16 9147 4.0 5.0 4.5 2.9 9178 chr3L 15929197 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938375 intron Pka-C3 - chr3L_16_15930001 chr3L_15930001 RAL-737 1338 chr3L 15944058 15944067 chr3L 15944169 15944170 4 109 5.5 6.5 6.0 0.6 112 chr3L 15944058 intron Pka-C3 - chr3L 15944114 intron Pka-C3 - chr3L 15944170 intron Pka-C3 - chr3L_4_15940001 chr3L_15940001 RAL-737 1339 chr3L 15946499 15946511 chr3L 15946585 15946597 4 86 8.0 1.5 4.8 0.7 98 chr3L 15946499 intron Pka-C3 - chr3L 15946548 intron Pka-C3 - chr3L 15946597 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-737 1340 chr3L 15977634 15977661 chr3L 15977727 15977754 18 92 5.0 6.5 5.8 2.6 120 chr3L 15977634 intron,intron brm -,CG17029 + chr3L 15977694 intron,intron brm -,CG17029 + chr3L 15977754 intron,intron brm -,CG17029 + chr3L_18_15975001 chr3L_15975001 RAL-737 1341 chr3L 16158810 16158822 chr3L 16158895 16158907 4 85 11.5 13.0 12.2 0.3 97 chr3L 16158810 intron CG5151 - chr3L 16158858 intron CG5151 - chr3L 16158907 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-737 1342 chr3L 16182068 16182093 chr3L 16182188 16182213 9 119 9.0 8.0 8.5 0.9 145 chr3L 16182068 intergenic not near genes chr3L 16182140 intergenic not near genes chr3L 16182213 intergenic not near genes chr3L_9_16180001 chr3L_16180001 RAL-737 1343 chr3L 16184107 16184141 chr3L 16188926 16188953 X-element 13 4817 2.0 2.5 2.2 4.1 4846 chr3L 16184107 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188953 intergenic not near genes chr3L_13_16185001 chr3L_16185001 RAL-737 1344 chr3L 16198386 16198413 chr3L 16198471 16198497 7 85 5.5 11.0 8.2 0.8 111 chr3L 16198386 intron CG33687 + chr3L 16198442 exon CG33687 + chr3L 16198497 exon CG33687 + chr3L_7_16195001 chr3L_16195001 RAL-737 1345 chr3L 16237912 16237941 chr3L 16237988 16238017 13 74 6.0 8.0 7.0 1.6 105 chr3L 16237912 exon l(3)72Dr + chr3L 16237964 intron l(3)72Dr + chr3L 16238017 intron l(3)72Dr + chr3L_13_16235001 chr3L_16235001 RAL-737 1346 chr3L 16241895 16241907 chr3L 16241978 16241991 5 83 9.0 5.0 7.0 0.6 96 chr3L 16241895 intergenic not near genes chr3L 16241943 intergenic not near genes chr3L 16241991 intergenic not near genes chr3L_5_16240001 chr3L_16240001 RAL-737 1347 chr3L 16241916 16241923 chr3L 16241977 16241981 5 70 7.5 5.0 6.2 0.7 65 chr3L 16241916 intergenic not near genes chr3L 16241948 intergenic not near genes chr3L 16241981 intergenic not near genes chr3L_5_16240001 chr3L_16240001 RAL-737 1348 chr3L 16322823 16322855 chr3L 16322913 16322922 20 84 13.0 9.0 11.0 1.7 99 chr3L 16322823 intergenic not near genes chr3L 16322872 intergenic not near genes chr3L 16322922 intergenic not near genes chr3L_20_16320001 chr3L_16320001 RAL-737 1349 chr3L 16443849 16443875 chr3L 16446189 16446215 Doc 18 2338 2.5 7.5 5.0 3.0 2366 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_18_16445001 chr3L_16445001 RAL-737 1350 chr3L 16493982 16494013 chr3L 16494492 16494529 jockey 20 506 13.5 9.5 11.5 1.6 547 chr3L 16493982 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494256 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_20_16490001 chr3L_16490001 RAL-737 1351 chr3L 16521812 16521838 chr3L 16521905 16521915 10 91 4.0 6.0 5.0 1.7 103 chr3L 16521812 intron CG43373 - chr3L 16521864 intron CG43373 - chr3L 16521915 intron CG43373 - chr3L_10_16520001 chr3L_16520001 RAL-737 1352 chr3L 16532897 16532925 chr3L 16532974 16533002 5 77 19.0 16.0 17.5 0.3 105 chr3L 16532897 intron CG43373 - chr3L 16532950 intron CG43373 - chr3L 16533002 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-737 1353 chr3L 16610693 16610713 chr3L 16610777 16610797 7 81 3.0 5.0 4.0 1.4 104 chr3L 16610693 3` UTR Su(P) - chr3L 16610745 exon Su(P) - chr3L 16610797 exon Su(P) - chr3L_7_16610001 chr3L_16610001 RAL-737 1354 chr3L 16616520 16616530 chr3L 16621847 16621855 297 4 5327 7.5 4.5 6.0 0.6 5335 chr3L 16616520 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621855 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-737 1355 chr3L 16638785 16638799 chr3L 16638865 16638879 9 79 5.0 7.0 6.0 1.3 94 chr3L 16638785 intron Abl - chr3L 16638832 intron Abl - chr3L 16638879 intron Abl - chr3L_9_16635001 chr3L_16635001 RAL-737 1356 chr3L 16652684 16652716 chr3L 16652761 16652795 4 77 23.0 24.0 23.5 0.2 111 chr3L 16652684 intron Baldspot - chr3L 16652740 intron Baldspot - chr3L 16652795 intron Baldspot - chr3L_4_16650001 chr3L_16650001 RAL-737 1357 chr3L 16659103 16659130 chr3L 16659181 16659190 5 69 6.5 6.0 6.2 0.7 87 chr3L 16659103 intron Baldspot - chr3L 16659146 intron Baldspot - chr3L 16659190 intron Baldspot - chr3L_5_16655001 chr3L_16655001 RAL-737 1358 chr3L 16662189 16662224 chr3L 16662555 16662588 14 366 7.5 8.0 7.8 1.6 399 chr3L 16662189 intergenic Galphaf - chr3L 16662388 intergenic Galphaf - chr3L 16662588 3` UTR Galphaf - chr3L_14_16660001 chr3L_16660001 RAL-737 1359 chr3L 16684017 16684050 chr3L 16689238 16689271 copia 9 5221 2.0 3.5 2.8 2.4 5254 chr3L 16684017 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689271 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_9_16685001 chr3L_16685001 RAL-737 1360 chr3L 16707964 16707991 chr3L 16708063 16708090 11 97 12.0 7.0 9.5 1.0 126 chr3L 16707964 intron,intron Lasp -,CG43954 - chr3L 16708027 intron,intron Lasp -,CG43954 - chr3L 16708090 intron,intron Lasp -,CG43954 - chr3L_11_16705001 chr3L_16705001 RAL-737 1361 chr3L 16749231 16749234 chr3L 16749283 16749305 5 69 2.0 3.5 2.8 1.3 74 chr3L 16749231 intergenic not near genes chr3L 16749268 intergenic not near genes chr3L 16749305 intergenic not near genes chr3L_5_16745001 chr3L_16745001 RAL-737 1362 chr3L 16757649 16757667 chr3L 16757739 16757757 8 90 6.5 8.0 7.2 1.0 108 chr3L 16757649 intergenic not near genes chr3L 16757703 intergenic not near genes chr3L 16757757 intergenic not near genes chr3L_8_16755001 chr3L_16755001 RAL-737 1363 chr3L 16808120 16808141 chr3L 16808201 16808222 7 81 6.5 7.0 6.8 0.9 102 chr3L 16808120 intron nudC + chr3L 16808171 intron nudC + chr3L 16808222 intron nudC + chr3L_7_16805001 chr3L_16805001 RAL-737 1364 chr3L 16818746 16818780 chr3L 16818822 16818856 8 76 7.5 10.0 8.8 0.8 110 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818801 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-737 1365 chr3L 16828485 16828516 chr3L 16828579 16828584 14 86 10.0 6.5 8.2 1.5 99 chr3L 16828485 exon CG13024 - chr3L 16828534 5` UTR CG13024 - chr3L 16828584 5` UTR CG13024 - chr3L_14_16825001 chr3L_16825001 RAL-737 1366 chr3L 16867546 16867562 chr3L 16867624 16867640 8 78 5.0 4.5 4.8 1.4 94 chr3L 16867546 intron Lmpt + chr3L 16867593 intron Lmpt + chr3L 16867640 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-737 1367 chr3L 16869575 16869606 chr3L 16869658 16869689 10 81 11.5 12.0 11.8 0.8 114 chr3L 16869575 intron Lmpt + chr3L 16869632 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_10_16865001 chr3L_16865001 RAL-737 1368 chr3L 16873340 16873376 chr3L 16873445 16873449 14 101 5.0 4.0 4.5 2.5 109 chr3L 16873340 intron Lmpt + chr3L 16873394 intron Lmpt + chr3L 16873449 intron Lmpt + chr3L_14_16870001 chr3L_16870001 RAL-737 1369 chr3L 16874541 16874568 chr3L 16874702 16874729 9 159 6.0 5.5 5.8 1.3 188 chr3L 16874541 intron Lmpt + chr3L 16874635 intron Lmpt + chr3L 16874729 intron Lmpt + chr3L_9_16870001 chr3L_16870001 RAL-737 1370 chr3L 16887638 16887665 chr3L 16887715 16887742 10 75 5.0 7.5 6.2 1.4 104 chr3L 16887638 intron Lmpt + chr3L 16887690 intron Lmpt + chr3L 16887742 intron Lmpt + chr3L_10_16885001 chr3L_16885001 RAL-737 1371 chr3L 16945729 16945754 chr3L 16954880 16954890 roo 6 9147 8.5 3.0 5.8 0.9 9161 chr3L 16945729 exon Obp73a + chr3L 16950310 intergenic not near genes chr3L 16954890 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-737 1372 chr3L 17026802 17026819 chr3L 17026883 17026899 4 79 7.5 7.5 7.5 0.5 97 chr3L 17026802 exon Fit2 + chr3L 17026850 3` UTR Fit2 + chr3L 17026899 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-737 1373 chr3L 17027166 17027183 chr3L 17027257 17027275 7 92 1.0 2.0 1.5 2.8 109 chr3L 17027166 intergenic Fit2 +,CG7730 + chr3L 17027220 intergenic Fit2 +,CG7730 + chr3L 17027275 intergenic Fit2 +,CG7730 + chr3L_7_17025001 chr3L_17025001 RAL-737 1374 chr3L 17034937 17034965 chr3L 17035124 17035153 G2 8 188 3.5 3.5 3.5 1.8 216 chr3L 17034937 intergenic not near genes chr3L 17035045 intergenic not near genes chr3L 17035153 intergenic not near genes chr3L_8_17035001 chr3L_17035001 RAL-737 1375 chr3L 17085004 17085034 chr3L 17094153 17094183 roo 7 9148 5.0 9.0 7.0 0.9 9179 chr3L 17085004 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-737 1376 chr3L 17109649 17109683 chr3L 17110135 17110168 13 483 5.5 10.0 7.8 1.5 519 chr3L 17109649 intron Rbp6 - chr3L 17109908 intron Rbp6 - chr3L 17110168 intron Rbp6 - chr3L_13_17105001 chr3L_17105001 RAL-737 1377 chr3L 17120653 17120685 chr3L 17120729 17120761 15 74 1.5 4.0 2.8 3.9 108 chr3L 17120653 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120761 intron Rbp6 - chr3L_15_17120001 chr3L_17120001 RAL-737 1378 chr3L 17202484 17202497 chr3L 17202629 17202659 9 156 9.5 9.0 9.2 0.9 175 chr3L 17202484 intron Rbp6 - chr3L 17202572 intron Rbp6 - chr3L 17202659 intron Rbp6 - chr3L_9_17200001 chr3L_17200001 RAL-737 1379 chr3L 17203627 17203645 chr3L 17203740 17203757 4 112 8.5 8.0 8.2 0.4 130 chr3L 17203627 intron Rbp6 - chr3L 17203692 intron Rbp6 - chr3L 17203757 intron Rbp6 - chr3L_4_17200001 chr3L_17200001 RAL-737 1380 chr3L 17329258 17329285 chr3L 17329338 17329361 7 79 5.0 5.0 5.0 1.2 103 chr3L 17329258 intergenic Or74a - chr3L 17329310 intergenic Or74a - chr3L 17329361 intergenic Or74a - chr3L_7_17325001 chr3L_17325001 RAL-737 1381 chr3L 17510733 17510766 chr3L 17510817 17510825 18 80 4.0 4.0 4.0 3.6 92 chr3L 17510733 exon Oatp74D + chr3L 17510779 intron Oatp74D + chr3L 17510825 intron Oatp74D + chr3L_18_17510001 chr3L_17510001 RAL-737 1382 chr3L 17516983 17517013 chr3L 17524540 17524564 412 4 7556 6.0 10.0 8.0 0.4 7581 chr3L 17516983 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-737 1383 chr3L 17537781 17537799 chr3L 17537854 17537878 4 77 9.5 10.5 10.0 0.4 97 chr3L 17537781 intron Nedd4 + chr3L 17537830 intron Nedd4 + chr3L 17537878 intron Nedd4 + chr3L_4_17535001 chr3L_17535001 RAL-737 1384 chr3L 17592788 17592819 chr3L 17592879 17592910 10 89 10.5 16.0 13.2 0.7 122 chr3L 17592788 intron Eip74EF - chr3L 17592849 intron Eip74EF - chr3L 17592910 intron Eip74EF - chr3L_10_17590001 chr3L_17590001 RAL-737 1385 chr3L 17672560 17672591 chr3L 17672636 17672667 6 73 18.5 17.0 17.8 0.3 107 chr3L 17672560 intron CG34251 + chr3L 17672614 intron CG34251 + chr3L 17672667 intron CG34251 + chr3L_6_17670001 chr3L_17670001 RAL-737 1386 chr3L 17730855 17730882 chr3L 17738180 17738212 mdg1 12 7327 3.5 3.5 3.5 2.7 7357 chr3L 17730855 intron Ccn + chr3L 17734534 intron Ccn + chr3L 17738212 intron Ccn + chr3L_12_17730001 chr3L_17730001 RAL-737 1387 chr3L 17789843 17789873 chr3L 17789919 17789949 12 76 5.5 5.5 5.5 1.8 106 chr3L 17789843 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789949 intergenic not near genes chr3L_12_17785001 chr3L_17785001 RAL-737 1388 chr3L 17799810 17799841 chr3L 17801597 17801628 S-element 9 1786 4.0 2.0 3.0 2.2 1818 chr3L 17799810 intron NUCB1 - chr3L 17800719 intron NUCB1 - chr3L 17801628 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-737 1389 chr3L 17834321 17834355 chr3L 17834485 17834519 10 161 3.0 1.5 2.2 3.1 198 chr3L 17834321 intron Grd + chr3L 17834420 intron Grd + chr3L 17834519 intron Grd + chr3L_10_17830001 chr3L_17830001 RAL-737 1390 chr3L 17836188 17836190 chr3L 17836266 17836267 4 78 2.5 9.0 5.8 0.6 79 chr3L 17836188 intron Grd + chr3L 17836228 intron Grd + chr3L 17836267 intron Grd + chr3L_4_17835001 chr3L_17835001 RAL-737 1391 chr3L 17902308 17902329 chr3L 17902380 17902395 5 71 9.0 15.5 12.2 0.4 87 chr3L 17902308 intron Prestin - chr3L 17902352 intron Prestin - chr3L 17902395 intron Prestin - chr3L_5_17900001 chr3L_17900001 RAL-737 1392 chr3L 17918376 17918404 chr3L 17921178 17921207 opus 6 2800 3.0 2.5 2.8 1.6 2831 chr3L 17918376 intergenic not near genes chr3L 17919792 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-737 1393 chr3L 17980172 17980200 chr3L 17980248 17980262 9 74 9.5 6.0 7.8 1.0 90 chr3L 17980172 intron Eip75B - chr3L 17980217 intron Eip75B - chr3L 17980262 intron Eip75B - chr3L_9_17980001 chr3L_17980001 RAL-737 1394 chr3L 18000672 18000708 chr3L 18000749 18000785 8 72 12.5 13.0 12.8 0.6 113 chr3L 18000672 intron Eip75B - chr3L 18000728 intron Eip75B - chr3L 18000785 intron Eip75B - chr3L_8_18000001 chr3L_18000001 RAL-737 1395 chr3L 18006225 18006254 chr3L 18006344 18006378 7 123 7.5 7.5 7.5 0.8 153 chr3L 18006225 intron Eip75B - chr3L 18006302 intron Eip75B - chr3L 18006378 intron Eip75B - chr3L_7_18005001 chr3L_18005001 RAL-737 1396 chr3L 18013977 18013996 chr3L 18014066 18014085 12 89 2.5 0.0 1.2 5.5 108 chr3L 18013977 intron Eip75B - chr3L 18014031 intron Eip75B - chr3L 18014085 intron Eip75B - chr3L_12_18010001 chr3L_18010001 RAL-737 1397 chr3L 18029963 18029985 chr3L 18030040 18030062 8 77 1.0 0.0 0.5 5.3 99 chr3L 18029963 intron Eip75B - chr3L 18030012 intron Eip75B - chr3L 18030062 intron Eip75B - chr3L_8_18030001 chr3L_18030001 RAL-737 1398 chr3L 18047705 18047740 chr3L 18056762 18056797 roo 12 9055 7.0 8.0 7.5 1.4 9092 chr3L 18047705 intron Eip75B - chr3L 18052251 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_12_18050001 chr3L_18050001 RAL-737 1399 chr3L 18057976 18058010 chr3L 18058077 18058090 4 96 11.0 11.0 11.0 0.3 114 chr3L 18057976 intron Eip75B - chr3L 18058033 intron Eip75B - chr3L 18058090 intron Eip75B - chr3L_4_18055001 chr3L_18055001 RAL-737 1400 chr3L 18073982 18073997 chr3L 18074083 18074098 6 100 24.0 16.5 20.2 0.3 116 chr3L 18073982 intergenic CG44004 - chr3L 18074040 intergenic CG44004 - chr3L 18074098 intergenic CG44004 - chr3L_6_18070001 chr3L_18070001 RAL-737 1401 chr3L 18092134 18092141 chr3L 18092216 18092223 7 80 0.0 0.5 0.2 5.8 89 chr3L 18092134 intron CG13698 - chr3L 18092178 intron CG13698 - chr3L 18092223 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-737 1402 chr3L 18107614 18107643 chr3L 18107707 18107736 5 93 11.5 11.0 11.2 0.4 122 chr3L 18107614 intergenic mRpS26 +,CG5147 - chr3L 18107675 intergenic CG5147 -,mRpS26 + chr3L 18107736 intergenic CG5147 -,mRpS26 + chr3L_5_18105001 chr3L_18105001 RAL-737 1403 chr3L 18122634 18122660 chr3L 18122711 18122737 5 77 14.0 13.0 13.5 0.3 103 chr3L 18122634 intergenic not near genes chr3L 18122686 intergenic not near genes chr3L 18122737 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-737 1404 chr3L 18150321 18150393 chr3L 18150418 18150465 8 92 2.5 4.0 3.2 1.9 144 chr3L 18150321 intron CG7330 + chr3L 18150393 intron CG7330 + chr3L 18150465 intron CG7330 + chr3L_8_18150001 chr3L_18150001 RAL-737 1405 chr3L 18175013 18175024 chr3L 18175183 18175203 4 170 9.5 8.0 8.8 0.4 190 chr3L 18175013 intron W - chr3L 18175108 intron W - chr3L 18175203 intron W - chr3L_4_18175001 chr3L_18175001 RAL-737 1406 chr3L 18198929 18198931 chr3L 24821492 24821494 13 6622563 0.0 10.0 5.0 2.2 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_13_21510001 chr3L_21510001 RAL-737 1407 chr3L 18223166 18223178 chr3L 18223249 18223261 4 83 6.0 1.5 3.8 0.8 95 chr3L 18223166 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223261 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-737 1408 chr3L 18248960 18248978 chr3L 18249058 18249064 4 95 12.5 4.0 8.2 0.4 104 chr3L 18248960 intergenic not near genes chr3L 18249012 intergenic not near genes chr3L 18249064 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-737 1409 chr3L 18253684 18253708 chr3L 18253892 18253911 9 207 7.0 6.0 6.5 1.2 227 chr3L 18253684 intergenic not near genes chr3L 18253798 intergenic not near genes chr3L 18253911 intergenic not near genes chr3L_9_18250001 chr3L_18250001 RAL-737 1410 chr3L 18262479 18262489 chr3L 18262562 18262572 4 83 5.0 5.5 5.2 0.6 93 chr3L 18262479 intergenic not near genes chr3L 18262526 intergenic not near genes chr3L 18262572 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-737 1411 chr3L 18306958 18306984 chr3L 18307042 18307067 6 82 7.5 8.5 8.0 0.7 109 chr3L 18306958 intergenic not near genes chr3L 18307012 intergenic not near genes chr3L 18307067 intergenic not near genes chr3L_6_18305001 chr3L_18305001 RAL-737 1412 chr3L 18359596 18359625 chr3L 18359688 18359717 16 90 7.0 7.0 7.0 2.0 121 chr3L 18359596 intergenic not near genes chr3L 18359656 intergenic not near genes chr3L 18359717 intergenic not near genes chr3L_16_18355001 chr3L_18355001 RAL-737 1413 chr3L 18383113 18383132 chr3L 18383195 18383214 4 82 4.0 8.5 6.2 0.6 101 chr3L 18383113 intergenic not near genes chr3L 18383164 intergenic not near genes chr3L 18383214 intergenic not near genes chr3L_4_18380001 chr3L_18380001 RAL-737 1414 chr3L 18408731 18408761 chr3L 18408817 18408847 7 84 6.5 8.0 7.2 0.9 116 chr3L 18408731 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408847 intergenic not near genes chr3L_7_18405001 chr3L_18405001 RAL-737 1415 chr3L 18436066 18436092 chr3L 18436161 18436190 13 94 1.5 4.0 2.8 3.4 124 chr3L 18436066 intergenic not near genes chr3L 18436128 intergenic not near genes chr3L 18436190 intergenic not near genes chr3L_13_18435001 chr3L_18435001 RAL-737 1416 chr3L 18456276 18456303 chr3L 18456364 18456391 7 87 6.0 3.5 4.8 1.2 115 chr3L 18456276 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-737 1417 chr3L 18464508 18464514 chr3L 18464572 18464580 4 68 5.0 4.5 4.8 0.7 72 chr3L 18464508 intergenic not near genes chr3L 18464544 intergenic not near genes chr3L 18464580 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-737 1418 chr3L 18485688 18485719 chr3L 18485773 18485806 14 84 9.5 7.5 8.5 1.5 118 chr3L 18485688 3` UTR AstC-R2 - chr3L 18485747 3` UTR AstC-R2 - chr3L 18485806 3` UTR AstC-R2 - chr3L_14_18485001 chr3L_18485001 RAL-737 1419 chr3L 18506139 18506163 chr3L 18509595 18509626 F-element 9 3459 2.0 4.5 3.2 2.1 3487 chr3L 18506139 intergenic not near genes chr3L 18507882 intergenic not near genes chr3L 18509626 intergenic not near genes chr3L_9_18505001 chr3L_18505001 RAL-737 1420 chr3L 18528627 18528661 chr3L 18537788 18537822 roo 11 9161 6.0 3.5 4.8 1.9 9195 chr3L 18528627 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537822 intergenic not near genes chr3L_11_18530001 chr3L_18530001 RAL-737 1421 chr3L 18546708 18546734 chr3L 18546797 18546818 5 91 3.0 6.5 4.8 0.9 110 chr3L 18546708 intergenic not near genes chr3L 18546763 intergenic not near genes chr3L 18546818 intergenic not near genes chr3L_5_18545001 chr3L_18545001 RAL-737 1422 chr3L 18585553 18585557 chr3L 18585629 18585633 4 76 11.5 8.5 10.0 0.4 80 chr3L 18585553 intergenic not near genes chr3L 18585593 intergenic not near genes chr3L 18585633 intergenic not near genes chr3L_4_18585001 chr3L_18585001 RAL-737 1423 chr3L 18590274 18590290 chr3L 18590356 18590369 4 81 9.0 13.5 11.2 0.3 95 chr3L 18590274 intergenic CG7271 + chr3L 18590322 intergenic CG7271 + chr3L 18590369 intergenic CG7271 + chr3L_4_18590001 chr3L_18590001 RAL-737 1424 chr3L 18593951 18593980 chr3L 18595931 18595960 Doc 9 1980 4.5 1.5 3.0 2.2 2009 chr3L 18593951 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_9_18590001 chr3L_18590001 RAL-737 1425 chr3L 15651868 15651869 chr3L 18629312 18629312 4 2977443 13.0 5.0 9.0 0.4 2977444 chr3L 15651868 intron Eig71Ec - chr3L 17140590 intron Rbp6 - chr3L 18629312 intron MYPT-75D + chr3L_4_17140001 chr3L_17140001 RAL-737 1426 chr3L 18638575 18638598 chr3L 18638669 18638692 5 92 5.0 1.5 3.2 1.2 117 chr3L 18638575 intron MYPT-75D + chr3L 18638634 intron MYPT-75D + chr3L 18638692 intron MYPT-75D + chr3L_5_18635001 chr3L_18635001 RAL-737 1427 chr3L 18656188 18656217 chr3L 18656273 18656302 4 85 8.0 7.5 7.8 0.5 114 chr3L 18656188 intron MYPT-75D + chr3L 18656245 intron MYPT-75D + chr3L 18656302 intron MYPT-75D + chr3L_4_18655001 chr3L_18655001 RAL-737 1428 chr3L 18701131 18701161 chr3L 18701218 18701249 10 87 2.0 5.0 3.5 2.2 118 chr3L 18701131 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701249 intergenic not near genes chr3L_10_18700001 chr3L_18700001 RAL-737 1429 chr3L 18710760 18710785 chr3L 18718712 18718735 Stalker2 5 7952 3.5 0.0 1.8 1.8 7975 chr3L 18710760 intergenic not near genes chr3L 18714748 intergenic not near genes chr3L 18718735 intergenic not near genes chr3L_5_18710001 chr3L_18710001 RAL-737 1430 chr3L 18721776 18721800 chr3L 18721867 18721891 4 89 2.5 2.5 2.5 1.1 115 chr3L 18721776 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721891 intergenic CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-737 1431 chr3L 18723419 18723437 chr3L 18723489 18723515 7 77 9.0 8.5 8.8 0.7 96 chr3L 18723419 intergenic CG12477 -,CR43985 + chr3L 18723467 intergenic CG12477 -,CR43985 + chr3L 18723515 intergenic CG12477 -,CR43985 + chr3L_7_18720001 chr3L_18720001 RAL-737 1432 chr3L 18730379 18730404 chr3L 18730559 18730563 6 171 11.0 5.5 8.2 0.7 184 chr3L 18730379 intergenic not near genes chr3L 18730471 intergenic not near genes chr3L 18730563 intergenic not near genes chr3L_6_18730001 chr3L_18730001 RAL-737 1433 chr3L 18753548 18753565 chr3L 18753630 18753647 6 82 4.0 4.0 4.0 1.2 99 chr3L 18753548 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753647 intron ftz-f1 - chr3L_6_18750001 chr3L_18750001 RAL-737 1434 chr3L 18772408 18772437 chr3L 18781088 18781118 roo 10 8681 5.0 2.5 3.8 2.1 8710 chr3L 18772408 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-737 1435 chr3L 18795413 18795444 chr3L 18795495 18795525 5 82 6.0 6.5 6.2 0.7 112 chr3L 18795413 intron ftz-f1 - chr3L 18795469 intron ftz-f1 - chr3L 18795525 intron ftz-f1 - chr3L_5_18795001 chr3L_18795001 RAL-737 1436 chr3L 18843867 18843883 chr3L 18843965 18843975 8 95 7.5 4.0 5.8 1.2 108 chr3L 18843867 intron Indy - chr3L 18843921 intron Indy - chr3L 18843975 intron Indy - chr3L_8_18840001 chr3L_18840001 RAL-737 1437 chr3L 18885993 18886013 chr3L 18886069 18886083 6 75 4.0 4.0 4.0 1.2 90 chr3L 18885993 intron CG3961 - chr3L 18886038 intron CG3961 - chr3L 18886083 intron CG3961 - chr3L_6_18885001 chr3L_18885001 RAL-737 1438 chr3L 18887300 18887331 chr3L 18887406 18887437 15 106 5.0 6.0 5.5 2.3 137 chr3L 18887300 intron CG3961 - chr3L 18887368 intron CG3961 - chr3L 18887437 intron CG3961 - chr3L_15_18885001 chr3L_18885001 RAL-737 1439 chr3L 18888265 18888281 chr3L 18888339 18888339 8 76 7.5 5.0 6.2 1.1 74 chr3L 18888265 intron CG3961 - chr3L 18888302 intron CG3961 - chr3L 18888339 intron CG3961 - chr3L_8_18885001 chr3L_18885001 RAL-737 1440 chr3L 18924481 18924507 chr3L 18924557 18924583 7 76 1.5 1.5 1.5 2.8 102 chr3L 18924481 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924583 intron CG32204 - chr3L_7_18920001 chr3L_18920001 RAL-737 1441 chr3L 18933625 18933661 chr3L 18933718 18933754 16 91 4.0 4.0 4.0 3.2 129 chr3L 18933625 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933754 intron CG32204 - chr3L_16_18930001 chr3L_18930001 RAL-737 1442 chr3L 18958602 18958614 chr3L 18958678 18958688 4 75 7.0 5.0 6.0 0.6 86 chr3L 18958602 intergenic not near genes chr3L 18958645 intergenic not near genes chr3L 18958688 intergenic not near genes chr3L_4_18955001 chr3L_18955001 RAL-737 1443 chr3L 18969564 18969629 chr3L 18969640 18969702 11 82 6.0 6.5 6.2 1.5 138 chr3L 18969564 intergenic not near genes chr3L 18969633 intergenic not near genes chr3L 18969702 intergenic not near genes chr3L_11_18965001 chr3L_18965001 RAL-737 1444 chr3L 19008837 19008877 chr3L 19009174 19009183 jockey 7 331 3.5 1.5 2.5 2.0 346 chr3L 19008837 intron nkd - chr3L 19009010 intron nkd - chr3L 19009183 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-737 1445 chr3L 19041508 19041538 chr3L 19041598 19041618 5 81 4.0 10.0 7.0 0.6 110 chr3L 19041508 intron nkd - chr3L 19041563 intron nkd - chr3L 19041618 intron nkd - chr3L_5_19040001 chr3L_19040001 RAL-737 1446 chr3L 19117063 19117076 chr3L 19124488 19124523 mdg1 6 7434 4.0 3.5 3.8 1.2 7460 chr3L 19117063 intron CG14082 - chr3L 19120793 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-737 1447 chr3L 19127367 19127398 chr3L 19127443 19127471 8 73 7.0 6.0 6.5 1.1 104 chr3L 19127367 intron CG14082 - chr3L 19127419 intron CG14082 - chr3L 19127471 intron CG14082 - chr3L_8_19125001 chr3L_19125001 RAL-737 1448 chr3L 19127735 19127755 chr3L 19127821 19127842 5 87 10.5 6.0 8.2 0.5 107 chr3L 19127735 intron CG14082 - chr3L 19127788 intron CG14082 - chr3L 19127842 intron CG14082 - chr3L_5_19125001 chr3L_19125001 RAL-737 1449 chr3L 19138144 19138155 chr3L 19138238 19138248 7 94 2.0 5.5 3.8 1.5 104 chr3L 19138144 intron CG14082 - chr3L 19138196 intron CG14082 - chr3L 19138248 intron CG14082 - chr3L_7_19135001 chr3L_19135001 RAL-737 1450 chr3L 19182386 19182419 chr3L 19182467 19182500 11 81 1.5 3.0 2.2 3.4 114 chr3L 19182386 intron fz2 - chr3L 19182443 intron fz2 - chr3L 19182500 intron fz2 - chr3L_11_19180001 chr3L_19180001 RAL-737 1451 chr3L 19206803 19206829 chr3L 19206883 19206909 7 76 11.5 9.5 10.5 0.6 106 chr3L 19206803 intron fz2 - chr3L 19206856 intron fz2 - chr3L 19206909 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-737 1452 chr3L 19208059 19208088 chr3L 19209432 19209462 Doc 5 1373 4.0 3.0 3.5 1.1 1403 chr3L 19208059 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209462 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-737 1453 chr3L 19210115 19210141 chr3L 19210211 19210237 7 91 1.0 5.0 3.0 1.8 122 chr3L 19210115 intron fz2 - chr3L 19210176 intron fz2 - chr3L 19210237 intron fz2 - chr3L_7_19210001 chr3L_19210001 RAL-737 1454 chr3L 19238724 19238751 chr3L 19238831 19238858 8 107 4.5 3.0 3.8 1.7 134 chr3L 19238724 intergenic not near genes chr3L 19238791 intergenic not near genes chr3L 19238858 intergenic not near genes chr3L_8_19235001 chr3L_19235001 RAL-737 1455 chr3L 19244113 19244135 chr3L 19244190 19244213 4 72 2.5 6.5 4.5 0.7 100 chr3L 19244113 intergenic not near genes chr3L 19244163 intergenic not near genes chr3L 19244213 intergenic not near genes chr3L_4_19240001 chr3L_19240001 RAL-737 1456 chr3L 19269825 19269848 chr3L 19270029 19270048 9 202 4.0 3.0 3.5 2.0 223 chr3L 19269825 intron,exon CG14085 +,CG14088 - chr3L 19269936 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_9_19265001 chr3L_19265001 RAL-737 1457 chr3L 19342762 19342775 chr3L 19342853 19342866 4 91 17.0 18.5 17.8 0.2 104 chr3L 19342762 3` UTR CG32206 - chr3L 19342814 3` UTR CG32206 - chr3L 19342866 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-737 1458 chr3L 19365918 19365923 chr3L 19366015 19366020 4 97 0.0 7.0 3.5 0.9 102 chr3L 19365918 intron CG32206 - chr3L 19365969 intron CG32206 - chr3L 19366020 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-737 1459 chr3L 19365924 19365929 chr3L 19366011 19366026 7 95 0.0 5.5 2.8 1.8 102 chr3L 19365924 intron CG32206 - chr3L 19365975 intron CG32206 - chr3L 19366026 intron CG32206 - chr3L_7_19365001 chr3L_19365001 RAL-737 1460 chr3L 19430402 19430428 chr3L 19430480 19430506 8 78 6.0 6.5 6.2 1.1 104 chr3L 19430402 intergenic not near genes chr3L 19430454 intergenic not near genes chr3L 19430506 intergenic not near genes chr3L_8_19430001 chr3L_19430001 RAL-737 1461 chr3L 19439191 19439288 chr3L 19439269 19439374 8 82 3.0 8.0 5.5 1.2 183 chr3L 19439191 intergenic not near genes chr3L 19439282 intergenic not near genes chr3L 19439374 intergenic not near genes chr3L_8_19435001 chr3L_19435001 RAL-737 1462 chr3L 19544236 19544269 chr3L 19544312 19544345 8 74 3.5 4.5 4.0 1.6 109 chr3L 19544236 intergenic CG9279 -,l(3)76BDr - chr3L 19544290 intergenic l(3)76BDr -,CG9279 - chr3L 19544345 3` UTR l(3)76BDr - chr3L_8_19540001 chr3L_19540001 RAL-737 1463 chr3L 19792359 19792370 chr3L 19792454 19792465 5 95 8.5 10.5 9.5 0.5 106 chr3L 19792359 intron,intron CG42637 -,Gyc76C - chr3L 19792412 intron,intron CG42637 -,Gyc76C - chr3L 19792465 intron,intron CG42637 -,Gyc76C - chr3L_5_19790001 chr3L_19790001 RAL-737 1464 chr3L 19820306 19820315 chr3L 19827855 19827864 412 6 7549 3.0 5.0 4.0 1.2 7558 chr3L 19820306 intron Deaf1 + chr3L 19824085 intron Deaf1 + chr3L 19827864 intron Deaf1 + chr3L_6_19820001 chr3L_19820001 RAL-737 1465 chr3L 19861826 19861851 chr3L 19863614 19863639 S-element 6 1786 1.5 6.5 4.0 1.2 1813 chr3L 19861826 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-737 1466 chr3L 19933537 19933555 chr3L 19934359 19934377 11 821 5.0 2.0 3.5 2.4 840 chr3L 19933537 intergenic CR45678 + chr3L 19933957 5` UTR CR45678 + chr3L 19934377 intergenic CR45678 + chr3L_11_19930001 chr3L_19930001 RAL-737 1467 chr3L 19962950 19962980 chr3L 19963027 19963058 7 76 1.5 3.0 2.2 2.2 108 chr3L 19962950 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963058 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-737 1468 chr3L 19981203 19981227 chr3L 19981283 19981307 15 79 5.5 4.5 5.0 2.5 104 chr3L 19981203 intergenic CG17732 + chr3L 19981255 intergenic CG17732 + chr3L 19981307 intergenic CG17732 + chr3L_15_19980001 chr3L_19980001 RAL-737 1469 chr3L 19992104 19992129 chr3L 19992181 19992181 5 70 20.0 17.5 18.8 0.3 77 chr3L 19992104 intron,intron CG7646 +,Nca + chr3L 19992142 intron,intron CG7646 +,Nca + chr3L 19992181 intron,intron CG7646 +,Nca + chr3L_5_19990001 chr3L_19990001 RAL-737 1470 chr3L 20038822 20038829 chr3L 20038999 20039007 4 176 8.5 3.0 5.8 0.6 185 chr3L 20038822 intergenic not near genes chr3L 20038914 intergenic not near genes chr3L 20039007 intergenic not near genes chr3L_4_20035001 chr3L_20035001 RAL-737 1471 chr3L 20038830 20038851 chr3L 20038996 20039005 5 168 7.5 3.0 5.2 0.8 175 chr3L 20038830 intergenic not near genes chr3L 20038918 intergenic not near genes chr3L 20039005 intergenic not near genes chr3L_5_20035001 chr3L_20035001 RAL-737 1472 chr3L 20057560 20057590 chr3L 20057673 20057703 19 110 6.0 8.5 7.2 2.3 143 chr3L 20057560 intergenic not near genes chr3L 20057632 intergenic not near genes chr3L 20057703 intergenic not near genes chr3L_19_20055001 chr3L_20055001 RAL-737 1473 chr3L 20081749 20081769 chr3L 20081832 20081850 7 80 5.5 11.0 8.2 0.8 101 chr3L 20081749 intron sNPF-R - chr3L 20081800 intron sNPF-R - chr3L 20081850 intron sNPF-R - chr3L_7_20080001 chr3L_20080001 RAL-737 1474 chr3L 20086788 20086814 chr3L 20086865 20086892 8 77 10.5 5.0 7.8 0.9 104 chr3L 20086788 intron sNPF-R - chr3L 20086840 intron sNPF-R - chr3L 20086892 intron sNPF-R - chr3L_8_20085001 chr3L_20085001 RAL-737 1475 chr3L 20113658 20113690 chr3L 20122915 20122947 roo 9 9256 5.0 1.0 3.0 2.2 9289 chr3L 20113658 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122947 intergenic not near genes chr3L_9_20115001 chr3L_20115001 RAL-737 1476 chr3L 20143080 20143114 chr3L 20143160 20143194 10 79 4.5 4.5 4.5 1.8 114 chr3L 20143080 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143194 intergenic not near genes chr3L_10_20140001 chr3L_20140001 RAL-737 1477 chr3L 20148282 20148309 chr3L 20148372 20148399 5 90 7.5 4.5 6.0 0.7 117 chr3L 20148282 intergenic not near genes chr3L 20148340 intergenic not near genes chr3L 20148399 intergenic not near genes chr3L_5_20145001 chr3L_20145001 RAL-737 1478 chr3L 20187465 20187486 chr3L 20187544 20187565 8 79 23.5 31.5 27.5 0.3 100 chr3L 20187465 intron CG42674 - chr3L 20187515 intron CG42674 - chr3L 20187565 intron CG42674 - chr3L_8_20185001 chr3L_20185001 RAL-737 1479 chr3L 20257332 20257362 chr3L 20258452 20258482 pogo 22 1116 1.0 4.0 2.5 6.3 1150 chr3L 20257332 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258482 intron rdgC + chr3L_22_20255001 chr3L_20255001 RAL-737 1480 chr3L 20315650 20315683 chr3L 20315730 20315763 11 78 4.5 7.0 5.8 1.6 113 chr3L 20315650 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315706 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315763 3` UTR,intron alphaSnap +,CR43875 - chr3L_11_20315001 chr3L_20315001 RAL-737 1481 chr3L 20345618 20345640 chr3L 20345699 20345721 4 79 29.5 27.0 28.2 0.1 103 chr3L 20345618 intergenic Rbbp5 - chr3L 20345670 intergenic Rbbp5 - chr3L 20345721 intergenic Rbbp5 - chr3L_4_20345001 chr3L_20345001 RAL-737 1482 chr3L 20405577 20405605 chr3L 20405661 20405679 10 80 9.5 7.0 8.2 1.1 102 chr3L 20405577 intergenic not near genes chr3L 20405628 intergenic not near genes chr3L 20405679 intergenic not near genes chr3L_10_20405001 chr3L_20405001 RAL-737 1483 chr3L 20409883 20409913 chr3L 20409969 20409980 5 81 2.5 4.0 3.2 1.2 97 chr3L 20409883 intron CG13248 - chr3L 20409932 intron CG13248 - chr3L 20409980 intron CG13248 - chr3L_5_20405001 chr3L_20405001 RAL-737 1484 chr3L 20476752 20476786 chr3L 20484351 20484364 springer 15 7597 6.0 5.5 5.8 2.2 7612 chr3L 20476752 3` UTR isoQC + chr3L 20480558 intergenic not near genes chr3L 20484364 3` UTR ZnT77C - chr3L_15_20480001 chr3L_20480001 RAL-737 1485 chr3L 20548363 20548384 chr3L 20548452 20548473 6 88 10.5 4.5 7.5 0.7 110 chr3L 20548363 intergenic not near genes chr3L 20548418 intergenic not near genes chr3L 20548473 intergenic not near genes chr3L_6_20545001 chr3L_20545001 RAL-737 1486 chr3L 20580050 20580059 chr3L 20580130 20580145 5 85 1.5 7.5 4.5 0.9 95 chr3L 20580050 intergenic not near genes chr3L 20580098 intergenic not near genes chr3L 20580145 intergenic not near genes chr3L_5_20580001 chr3L_20580001 RAL-737 1487 chr3L 20710756 20710779 chr3L 20710833 20710856 4 77 16.5 21.0 18.8 0.2 100 chr3L 20710756 intergenic not near genes chr3L 20710806 intergenic not near genes chr3L 20710856 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-737 1488 chr3L 13436144 13436176 chr3L 20815840 20815878 14 7379700 11.0 28.0 19.5 0.7 7379734 chr3L 13436144 intron CG10154 - chr3L 17126011 intron Rbp6 - chr3L 20815878 intron CG3618 - chr3L_14_17125001 chr3L_17125001 RAL-737 1489 chr3L 20849271 20849298 chr3L 20849350 20849377 11 79 5.5 6.0 5.8 1.6 106 chr3L 20849271 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849377 intron CG32432 - chr3L_11_20845001 chr3L_20845001 RAL-737 1490 chr3L 20886826 20886836 chr3L 20886902 20886912 6 76 7.5 0.0 3.8 1.2 86 chr3L 20886826 intergenic CR44686 - chr3L 20886869 intergenic CR44686 - chr3L 20886912 intergenic CR44686 - chr3L_6_20885001 chr3L_20885001 RAL-737 1491 chr3L 20913757 20913772 chr3L 20913839 20913854 4 80 4.0 3.0 3.5 0.9 97 chr3L 20913757 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913854 intergenic CR43930 - chr3L_4_20910001 chr3L_20910001 RAL-737 1492 chr3L 20913775 20913780 chr3L 20913834 20913856 7 68 2.5 2.5 2.5 2.0 81 chr3L 20913775 intergenic CR43930 - chr3L 20913816 intergenic CR43930 - chr3L 20913856 intergenic CR43930 - chr3L_7_20910001 chr3L_20910001 RAL-737 1493 chr3L 21014927 21014934 chr3L 21023408 21023409 Tirant 4 8480 5.0 4.0 4.5 0.7 8482 chr3L 21014927 intron skd - chr3L 21019168 intron skd - chr3L 21023409 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-737 1494 chr3L 21014937 21014947 chr3L 21023403 21023413 Tirant 4 8468 3.5 4.0 3.8 0.8 8476 chr3L 21014937 intron skd - chr3L 21019175 intron skd - chr3L 21023413 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-737 1495 chr3L 21039690 21039704 chr3L 21039776 21039795 5 87 7.0 6.5 6.8 0.6 105 chr3L 21039690 intron siz + chr3L 21039742 intron siz + chr3L 21039795 intron siz + chr3L_5_21035001 chr3L_21035001 RAL-737 1496 chr3L 21082212 21082239 chr3L 21082290 21082317 13 76 2.5 6.5 4.5 2.4 105 chr3L 21082212 intron ko - chr3L 21082264 intron ko - chr3L 21082317 intron ko - chr3L_13_21080001 chr3L_21080001 RAL-737 1497 chr3L 21151867 21151897 chr3L 21156950 21156981 flea 12 5082 5.0 4.5 4.8 2.1 5114 chr3L 21151867 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_12_21150001 chr3L_21150001 RAL-737 1498 chr3L 21158518 21158552 chr3L 21158654 21158670 8 133 8.0 8.0 8.0 0.9 152 chr3L 21158518 intron Ac78C - chr3L 21158594 intron Ac78C - chr3L 21158670 intron Ac78C - chr3L_8_21155001 chr3L_21155001 RAL-737 1499 chr3L 21161431 21161453 chr3L 21161510 21161516 9 77 12.5 10.5 11.5 0.7 85 chr3L 21161431 intron Ac78C - chr3L 21161474 intron Ac78C - chr3L 21161516 intron Ac78C - chr3L_9_21160001 chr3L_21160001 RAL-737 1500 chr3L 21161454 21161458 chr3L 21161509 21161537 5 74 12.5 10.5 11.5 0.4 83 chr3L 21161454 intron Ac78C - chr3L 21161496 intron Ac78C - chr3L 21161537 intron Ac78C - chr3L_5_21160001 chr3L_21160001 RAL-737 1501 chr3L 21243748 21243776 chr3L 21251311 21251311 412 7 7550 3.0 4.0 3.5 1.6 7563 chr3L 21243748 intron Eip78C + chr3L 21247530 intron Eip78C + chr3L 21251311 intron Eip78C + chr3L_7_21245001 chr3L_21245001 RAL-737 1502 chr3L 21306149 21306177 chr3L 21315308 21315336 roo 13 9157 7.0 7.0 7.0 1.6 9187 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315336 3` UTR Pc - chr3L_13_21310001 chr3L_21310001 RAL-737 1503 chr3L 21361736 21361737 chr3L 21362689 21362691 G2 4 954 15.0 7.0 11.0 0.3 955 chr3L 21361736 intergenic not near genes chr3L 21362214 intergenic not near genes chr3L 21362691 intergenic not near genes chr3L_4_21360001 chr3L_21360001 RAL-737 1504 chr3L 21372721 21372752 chr3L 21379229 21379242 McClintock 4 6504 11.0 10.5 10.8 0.3 6521 chr3L 21372721 intergenic not near genes chr3L 21375982 intergenic not near genes chr3L 21379242 intergenic not near genes chr3L_4_21375001 chr3L_21375001 RAL-737 1505 chr3L 21415144 21415165 chr3L 21415225 21415248 9 81 4.0 7.0 5.5 1.4 104 chr3L 21415144 intron rgn + chr3L 21415196 intron rgn + chr3L 21415248 intron rgn + chr3L_9_21415001 chr3L_21415001 RAL-737 1506 chr3L 4341332 4341337 chr3L 21448026 21448026 6 17106692 18.0 24.5 21.2 0.3 17106694 chr3L 4341332 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_6_12890001 chr3L_12890001 RAL-737 1507 chr3L 16736390 16736393 chr3L 21448026 21448026 4 4711634 4.0 24.5 14.2 0.3 4711636 chr3L 16736390 intron CG9701 + chr3L 19092208 intergenic MESR6 + chr3L 21448026 3` UTR Syx7 + chr3L_4_19090001 chr3L_19090001 RAL-737 1508 chr3L 4341332 4341333 chr3L 21448027 21448027 6 17106695 18.5 25.0 21.8 0.3 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_6_12890001 chr3L_12890001 RAL-737 1509 chr3L 21458342 21458353 chr3L 21458437 21458448 INE-1 8 94 11.0 11.0 11.0 0.7 106 chr3L 21458342 intergenic not near genes chr3L 21458395 intergenic not near genes chr3L 21458448 intergenic not near genes chr3L_8_21455001 chr3L_21455001 RAL-737 1510 chr3L 21498842 21498870 chr3L 21500471 21500502 1360 4 1632 4.5 2.5 3.5 0.9 1660 chr3L 21498842 intron Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-737 1511 chr3L 21769062 21769086 chr3L 21769149 21769173 11 87 5.5 9.0 7.2 1.3 111 chr3L 21769062 intron,intron Syn1 -,CG42689 + chr3L 21769118 intron,intron Syn1 -,CG42689 + chr3L 21769173 intron,intron Syn1 -,CG42689 + chr3L_11_21765001 chr3L_21765001 RAL-737 1512 chr3L 21776671 21776698 chr3L 21776758 21776785 7 85 3.5 1.5 2.5 2.0 114 chr3L 21776671 intron,intron CG42689 +,CG42552 + chr3L 21776728 intron,intron CG42689 +,CG42552 + chr3L 21776785 intron,intron CG42689 +,CG42552 + chr3L_7_21775001 chr3L_21775001 RAL-737 1513 chr3L 21836726 21836762 chr3L 21836812 21836848 12 85 2.5 5.5 4.0 2.4 122 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836787 3` UTR P5CDh1 - chr3L 21836848 3` UTR P5CDh1 - chr3L_12_21835001 chr3L_21835001 RAL-737 1514 chr3L 21849505 21849529 chr3L 21849587 21849611 9 82 9.5 9.5 9.5 0.9 106 chr3L 21849505 intron mub + chr3L 21849558 intron mub + chr3L 21849611 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-737 1515 chr3L 21868347 21868366 chr3L 21868669 21868685 INE-1 7 323 15.0 17.0 16.0 0.4 338 chr3L 21868347 intron mub + chr3L 21868516 intron mub + chr3L 21868685 intron mub + chr3L_7_21865001 chr3L_21865001 RAL-737 1516 chr3L 21871559 21871592 chr3L 21871647 21871647 8 80 3.0 3.0 3.0 2.0 88 chr3L 21871559 intron mub + chr3L 21871603 intron mub + chr3L 21871647 intron mub + chr3L_8_21870001 chr3L_21870001 RAL-737 1517 chr3L 21874997 21875027 chr3L 21875154 21875179 14 157 5.0 10.0 7.5 1.6 182 chr3L 21874997 intron mub + chr3L 21875088 intron mub + chr3L 21875179 intron mub + chr3L_14_21875001 chr3L_21875001 RAL-737 1518 chr3L 21901037 21901044 chr3L 21901126 21901129 4 90 5.5 10.0 7.8 0.5 92 chr3L 21901037 intron mub + chr3L 21901083 intron mub + chr3L 21901129 intron mub + chr3L_4_21900001 chr3L_21900001 RAL-737 1519 chr3L 21952450 21952465 chr3L 21953193 21953208 transib1 6 742 10.0 7.5 8.8 0.6 758 chr3L 21952450 intergenic not near genes chr3L 21952829 intergenic not near genes chr3L 21953208 intergenic not near genes chr3L_6_21950001 chr3L_21950001 RAL-737 1520 chr3L 22016382 22016401 chr3L 22016492 22016500 4 109 10.5 4.0 7.2 0.5 118 chr3L 22016382 intergenic not near genes chr3L 22016441 intergenic not near genes chr3L 22016500 intergenic not near genes chr3L_4_22015001 chr3L_22015001 RAL-737 1521 chr3L 22033688 22033715 chr3L 22033766 22033793 10 76 7.0 9.0 8.0 1.1 105 chr3L 22033688 intergenic not near genes chr3L 22033740 intergenic not near genes chr3L 22033793 intergenic not near genes chr3L_10_22030001 chr3L_22030001 RAL-737 1522 chr3L 22046182 22046216 chr3L 22046285 22046311 15 99 12.5 8.0 10.2 1.3 129 chr3L 22046182 intron Oct-TyrR + chr3L 22046246 intron Oct-TyrR + chr3L 22046311 intron Oct-TyrR + chr3L_15_22045001 chr3L_22045001 RAL-737 1523 chr3L 22046488 22046505 chr3L 22048792 22048802 4 2299 34.5 25.0 29.8 0.1 2314 chr3L 22046488 intron Oct-TyrR + chr3L 22047645 intron Oct-TyrR + chr3L 22048802 intron Oct-TyrR + chr3L_4_22045001 chr3L_22045001 RAL-737 1524 chr3L 22099681 22099709 chr3L 22105867 22105895 3S18 16 6185 5.0 7.0 6.0 2.3 6214 chr3L 22099681 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_16_22100001 chr3L_22100001 RAL-737 1525 chr3L 22124809 22124840 chr3L 22124892 22124901 10 79 3.5 4.5 4.0 2.0 92 chr3L 22124809 intergenic not near genes chr3L 22124855 intergenic not near genes chr3L 22124901 intergenic not near genes chr3L_10_22120001 chr3L_22120001 RAL-737 1526 chr3L 22137520 22137552 chr3L 22137597 22137629 11 75 1.5 4.0 2.8 2.9 109 chr3L 22137520 intron olf413 + chr3L 22137574 intron olf413 + chr3L 22137629 intron olf413 + chr3L_11_22135001 chr3L_22135001 RAL-737 1527 chr3L 22166453 22166471 chr3L 22166524 22166542 6 75 5.5 5.5 5.5 0.9 89 chr3L 22166453 intron olf413 + chr3L 22166498 intron olf413 + chr3L 22166542 intron olf413 + chr3L_6_22165001 chr3L_22165001 RAL-737 1528 chr3L 22169458 22169489 chr3L 22169550 22169571 13 87 7.0 7.5 7.2 1.6 113 chr3L 22169458 intron olf413 + chr3L 22169514 intron olf413 + chr3L 22169571 intron olf413 + chr3L_13_22165001 chr3L_22165001 RAL-737 1529 chr3L 22447194 22447234 chr3L 22447285 22447325 16 87 4.5 4.5 4.5 2.9 131 chr3L 22447194 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_16_22445001 chr3L_22445001 RAL-737 1530 chr3L 22543076 22543108 chr3L 22543151 22543185 11 75 3.5 3.5 3.5 2.4 109 chr3L 22543076 intergenic not near genes chr3L 22543130 intergenic not near genes chr3L 22543185 intergenic not near genes chr3L_11_22540001 chr3L_22540001 RAL-737 1531 chr3L 22555782 22555798 chr3L 22563243 22563268 blood 6 7464 3.5 3.5 3.5 1.3 7486 chr3L 22555782 intergenic not near genes chr3L 22559525 intergenic not near genes chr3L 22563268 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-737 1532 chr3L 22570429 22570445 chr3L 22570573 22570583 5 141 18.5 14.5 16.5 0.3 154 chr3L 22570429 intergenic not near genes chr3L 22570506 intergenic not near genes chr3L 22570583 intergenic not near genes chr3L_5_22570001 chr3L_22570001 RAL-737 1533 chr3L 22577632 22577648 chr3L 22582402 22582413 Doc 6 4779 3.5 5.0 4.2 1.2 4781 chr3L 22577632 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582413 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-737 1534 chr3L 22617190 22617206 chr3L 22624642 22624658 blood 4 7452 11.0 4.5 7.8 0.5 7468 chr3L 22617190 intron CG14459 - chr3L 22620924 intron CG14459 - chr3L 22624658 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-737 1535 chr3L 22617210 22617221 chr3L 22624640 22624673 blood 9 7444 6.5 4.5 5.5 1.4 7463 chr3L 22617210 intron CG14459 - chr3L 22620942 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-737 1536 chr3L 22630741 22630747 chr3L 22630820 22630826 4 79 9.5 6.0 7.8 0.5 85 chr3L 22630741 intron CG14459 - chr3L 22630784 intron CG14459 - chr3L 22630826 intron CG14459 - chr3L_4_22630001 chr3L_22630001 RAL-737 1537 chr3L 22630751 22630767 chr3L 22630817 22630817 5 65 8.0 7.0 7.5 0.6 66 chr3L 22630751 intron CG14459 - chr3L 22630784 intron CG14459 - chr3L 22630817 intron CG14459 - chr3L_5_22630001 chr3L_22630001 RAL-737 1538 chr3L 22761389 22761423 chr3L 22766823 22766833 Ivk 17 5432 5.5 8.5 7.0 2.1 5444 chr3L 22761389 intron SPoCk + chr3L 22764111 intron SPoCk + chr3L 22766833 intron SPoCk + chr3L_17_22760001 chr3L_22760001 RAL-737 1539 chr3L 22865988 22866013 chr3L 22867121 22867144 Doc 11 1132 4.0 5.0 4.5 2.0 1156 chr3L 22865988 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_11_22865001 chr3L_22865001 RAL-737 1540 chr3L 20525228 20525230 chr3L 22908066 22908066 7 2382837 6.5 39.5 23.0 0.3 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-737 1541 chr3L 19220633 19220635 chr3L 22908067 22908067 4 3687432 25.0 39.5 32.2 0.1 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-737 1542 chr3L 22980579 22980599 chr3L 22980664 22980684 10 83 7.5 8.5 8.0 1.1 105 chr3L 22980579 intergenic not near genes chr3L 22980632 intergenic not near genes chr3L 22980684 intergenic not near genes chr3L_10_22980001 chr3L_22980001 RAL-737 1543 chr3L 22989866 22989892 chr3L 22996838 22996866 297 7 6974 3.0 4.0 3.5 1.6 7000 chr3L 22989866 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996866 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-737 1544 chr3L 23436988 23437012 chr3L 23437135 23437139 8 140 14.5 14.5 14.5 0.5 151 chr3L 23436988 intergenic not near genes chr3L 23437064 intergenic not near genes chr3L 23437139 intergenic not near genes chr3L_8_23435001 chr3L_23435001 RAL-737 1545 chr3L 23875531 23875558 chr3L 23875612 23875630 4 78 5.0 3.5 4.2 0.8 99 chr3L 23875531 intron CG40470 - chr3L 23875580 intron CG40470 - chr3L 23875630 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-737 1546 chr3L 24012404 24012439 chr3L 24020745 24020780 roo 13 8338 5.0 4.0 4.5 2.4 8376 chr3L 24012404 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020780 intergenic not near genes chr3L_13_24015001 chr3L_24015001 RAL-737 1547 chr3L 24791897 24791920 chr3L 24796676 24796699 Doc 6 4776 2.5 3.5 3.0 1.5 4802 chr3L 24791897 intergenic not near genes chr3L 24794298 intergenic not near genes chr3L 24796699 intergenic not near genes chr3L_6_24790001 chr3L_24790001 RAL-737 1548 chr3L 20525229 20525229 chr3L 24821492 24821492 5 4296263 6.5 10.0 8.2 0.5 4296263 chr3L 20525229 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-737 1549 chr3L 18198931 18198931 chr3L 24821493 24821493 4 6622562 0.0 10.5 5.2 0.6 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-737 1550 chr3L 25513587 25513610 chr3L 25513655 25513661 7 70 5.5 4.0 4.8 1.2 74 chr3L 25513587 intron CG41343 - chr3L 25513624 intron CG41343 - chr3L 25513661 intron CG41343 - chr3L_7_25510001 chr3L_25510001 RAL-737 1551 chr3L 25628492 25628532 chr3L 25633263 25633277 F-element 14 4766 4.0 2.0 3.0 3.5 4785 chr3L 25628492 intron CG41343 - chr3L 25630884 intron CG41343 - chr3L 25633277 intron CG41343 - chr3L_14_25630001 chr3L_25630001 RAL-737 1552 chr3L 26009427 26009453 chr3L 26009518 26009527 7 80 1.5 5.0 3.2 1.7 100 chr3L 26009427 intron CG40178 - chr3L 26009477 intron CG40178 - chr3L 26009527 intron CG40178 - chr3L_7_26005001 chr3L_26005001 RAL-737 1553 chr3L 26694926 26694958 chr3L 26695006 26695038 7 80 9.5 5.0 7.2 0.9 112 chr3L 26694926 intergenic not near genes chr3L 26694982 intergenic not near genes chr3L 26695038 intergenic not near genes chr3L_7_26690001 chr3L_26690001 RAL-737 1554 chr3L 27368888 27368910 chr3L 27369429 27369432 6 536 10.5 10.5 10.5 0.5 544 chr3L 27368888 intron Dbp80 + chr3L 27369160 intron Dbp80 + chr3L 27369432 intron Dbp80 + chr3L_6_27365001 chr3L_27365001 RAL-737 1555 chr3L 27980696 27980729 chr3L 27985494 27985505 Doc 5 4790 5.0 2.5 3.8 1.0 4809 chr3L 27980696 intron CG17514 - chr3L 27983100 intron CG17514 - chr3L 27985505 intron CG17514 - chr3L_5_27980001 chr3L_27980001 RAL-737 1556 chr3R 446065 446092 chr3R 446163 446195 15 100 2.5 0.5 1.5 6.0 130 chr3R 446065 intergenic not near genes chr3R 446130 intergenic not near genes chr3R 446195 intergenic not near genes chr3R_15_445001 chr3R_445001 RAL-737 1557 chr3R 758878 758896 chr3R 758975 758976 4 92 4.5 2.5 3.5 0.9 98 chr3R 758878 intergenic not near genes chr3R 758927 intergenic not near genes chr3R 758976 intergenic not near genes chr3R_4_755001 chr3R_755001 RAL-737 1558 chr3R 1062388 1062410 chr3R 1062546 1062568 4 156 3.0 4.0 3.5 0.9 180 chr3R 1062388 intron CG15831 + chr3R 1062478 intron CG15831 + chr3R 1062568 intron CG15831 + chr3R_4_1060001 chr3R_1060001 RAL-737 1559 chr3R 1443429 1443460 chr3R 1443505 1443510 4 70 1.5 4.0 2.8 1.1 81 chr3R 1443429 intron CG40155 + chr3R 1443470 intron CG40155 + chr3R 1443510 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-737 1560 chr3R 1446691 1446699 chr3R 2999472 2999475 invader2 5 1552780 12.5 14.5 13.5 0.3 1552784 chr3R 1446691 intron CG40155 + chr3R 2223083 intergenic not near genes chr3R 2999475 intron CG42618 - chr3R_5_2220001 chr3R_2220001 RAL-737 1561 chr3R 1939051 1939084 chr3R 1939145 1939173 9 93 5.5 6.5 6.0 1.3 122 chr3R 1939051 intergenic not near genes chr3R 1939112 intergenic not near genes chr3R 1939173 intergenic not near genes chr3R_9_1935001 chr3R_1935001 RAL-737 1562 chr3R 2534134 2534162 chr3R 2541700 2541730 6 7568 17.0 24.0 20.5 0.3 7596 chr3R 2534134 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541730 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-737 1563 chr3R 3019605 3019616 chr3R 3019780 3019786 5 174 6.0 4.5 5.2 0.8 181 chr3R 3019605 intron CG42618 - chr3R 3019696 intron CG42618 - chr3R 3019786 intron CG42618 - chr3R_5_3015001 chr3R_3015001 RAL-737 1564 chr3R 3581013 3581023 chr3R 3581240 3581250 6 226 5.5 3.5 4.5 1.1 237 chr3R 3581013 intron Parp - chr3R 3581132 intron Parp - chr3R 3581250 intron Parp - chr3R_6_3580001 chr3R_3580001 RAL-737 1565 chr3R 4063810 4063829 chr3R 4069090 4069109 6 5280 9.5 25.5 17.5 0.3 5299 chr3R 4063810 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-737 1566 chr3R 4105040 4105058 chr3R 4110244 4110262 copia 7 5203 7.0 3.5 5.2 1.1 5222 chr3R 4105040 intergenic not near genes chr3R 4107651 intergenic not near genes chr3R 4110262 intergenic not near genes chr3R_7_4105001 chr3R_4105001 RAL-737 1567 chr3R 4132904 4132928 chr3R 4133058 4133082 4 152 12.0 12.0 12.0 0.3 178 chr3R 4132904 5` UTR Gfat1 + chr3R 4132993 intron Gfat1 + chr3R 4133082 intron Gfat1 + chr3R_4_4130001 chr3R_4130001 RAL-737 1568 chr3R 4206069 4206102 chr3R 4211644 4211677 mdg3 14 5572 7.0 3.5 5.2 2.3 5608 chr3R 4206069 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_14_4205001 chr3R_4205001 RAL-737 1569 chr3R 4366757 4366763 chr3R 4375140 4375146 roo 4 8382 12.0 7.0 9.5 0.4 8389 chr3R 4366757 3` UTR CG1090 + chr3R 4370952 intergenic not near genes chr3R 4375146 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-737 1570 chr3R 4366766 4366784 chr3R 4375138 4375167 roo 9 8381 6.5 7.0 6.8 1.2 8401 chr3R 4366766 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375167 5` UTR CR44922 + chr3R_9_4370001 chr3R_4370001 RAL-737 1571 chr3R 4408410 4408446 chr3R 4412714 4412724 Juan 13 4302 5.0 6.5 5.8 1.9 4314 chr3R 4408410 intron CG32944 - chr3R 4410567 intron CG32944 - chr3R 4412724 intron CG32944 - chr3R_13_4410001 chr3R_4410001 RAL-737 1572 chr3R 4527584 4527612 chr3R 4528134 4528140 8 546 6.0 7.0 6.5 1.1 556 chr3R 4527584 intron CG34357 - chr3R 4527862 intron CG34357 - chr3R 4528140 intron CG34357 - chr3R_8_4525001 chr3R_4525001 RAL-737 1573 chr3R 4555329 4555364 chr3R 4555448 4555483 12 119 8.5 5.5 7.0 1.5 154 chr3R 4555329 intron CG34357 - chr3R 4555406 intron CG34357 - chr3R 4555483 intron CG34357 - chr3R_12_4555001 chr3R_4555001 RAL-737 1574 chr3R 4609546 4609582 chr3R 4610710 4610746 1360 22 1158 7.5 5.5 6.5 2.9 1200 chr3R 4609546 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610746 intergenic not near genes chr3R_22_4610001 chr3R_4610001 RAL-737 1575 chr3R 4753241 4753273 chr3R 4757544 4757568 F-element 5 4301 7.0 9.0 8.0 0.6 4327 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757568 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-737 1576 chr3R 4769162 4769187 chr3R 4769240 4769265 5 75 2.0 5.0 3.5 1.1 103 chr3R 4769162 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-737 1577 chr3R 4784518 4784522 chr3R 4791393 4791420 6 6880 21.0 24.0 22.5 0.3 6902 chr3R 4784518 exon CG17387 - chr3R 4787969 exon ctrip - chr3R 4791420 exon ctrip - chr3R_6_4785001 chr3R_4785001 RAL-737 1578 chr3R 4829954 4829985 chr3R 4830037 4830068 13 79 6.5 10.5 8.5 1.4 114 chr3R 4829954 3` UTR CG14658 - chr3R 4830011 3` UTR CG14658 - chr3R 4830068 exon CG14658 - chr3R_13_4830001 chr3R_4830001 RAL-737 1579 chr3R 4922342 4922363 chr3R 4922421 4922441 6 78 5.5 8.0 6.8 0.8 99 chr3R 4922342 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922441 intron Cdep + chr3R_6_4920001 chr3R_4920001 RAL-737 1580 chr3R 4966005 4966037 chr3R 4966096 4966129 12 92 6.0 5.5 5.8 1.8 124 chr3R 4966005 intron CG1124 + chr3R 4966067 intron CG1124 + chr3R 4966129 intron CG1124 + chr3R_12_4965001 chr3R_4965001 RAL-737 1581 chr3R 5045845 5045874 chr3R 5052947 5052976 HMS-Beagle 10 7100 8.5 3.5 6.0 1.4 7131 chr3R 5045845 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_10_5045001 chr3R_5045001 RAL-737 1582 chr3R 5067979 5068014 chr3R 5073496 5073531 mdg3 17 5515 9.0 4.5 6.8 2.2 5552 chr3R 5067979 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_17_5070001 chr3R_5070001 RAL-737 1583 chr3R 5131350 5131375 chr3R 5131429 5131454 6 77 6.5 10.0 8.2 0.7 104 chr3R 5131350 intergenic not near genes chr3R 5131402 intergenic not near genes chr3R 5131454 intergenic not near genes chr3R_6_5130001 chr3R_5130001 RAL-737 1584 chr3R 5278096 5278105 chr3R 5278176 5278186 6 81 13.0 13.0 13.0 0.4 90 chr3R 5278096 intron mtd - chr3R 5278141 intron mtd - chr3R 5278186 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-737 1585 chr3R 5278106 5278115 chr3R 5278169 5278196 7 75 9.0 9.0 9.0 0.7 90 chr3R 5278106 intron mtd - chr3R 5278151 intron mtd - chr3R 5278196 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-737 1586 chr3R 5306145 5306155 chr3R 5306215 5306223 6 74 3.5 5.0 4.2 1.2 78 chr3R 5306145 intron mtd - chr3R 5306184 intron mtd - chr3R 5306223 intron mtd - chr3R_6_5305001 chr3R_5305001 RAL-737 1587 chr3R 5338404 5338432 chr3R 5343581 5343605 Rt1c 9 5174 3.5 10.5 7.0 1.1 5201 chr3R 5338404 intron mtd - chr3R 5341004 intron mtd - chr3R 5343605 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-737 1588 chr3R 5445959 5445990 chr3R 5452419 5452450 Burdock 13 6459 4.0 3.0 3.5 2.9 6491 chr3R 5445959 intron CG14669 + chr3R 5449204 intron CG14669 + chr3R 5452450 intron CG14669 + chr3R_13_5445001 chr3R_5445001 RAL-737 1589 chr3R 5453326 5453345 chr3R 5453431 5453458 4 111 2.5 3.5 3.0 1.0 132 chr3R 5453326 intron CG14669 + chr3R 5453392 intron CG14669 + chr3R 5453458 intron CG14669 + chr3R_4_5450001 chr3R_5450001 RAL-737 1590 chr3R 5626464 5626469 chr3R 5626553 5626560 4 89 12.0 3.5 7.8 0.5 96 chr3R 5626464 intergenic not near genes chr3R 5626512 intergenic not near genes chr3R 5626560 intergenic not near genes chr3R_4_5625001 chr3R_5625001 RAL-737 1591 chr3R 5626470 5626495 chr3R 5626549 5626575 11 78 3.5 3.0 3.2 2.6 105 chr3R 5626470 intergenic not near genes chr3R 5626522 intergenic not near genes chr3R 5626575 intergenic not near genes chr3R_11_5625001 chr3R_5625001 RAL-737 1592 chr3R 5627011 5627044 chr3R 5627127 5627160 11 113 5.0 4.0 4.5 2.0 149 chr3R 5627011 intergenic not near genes chr3R 5627086 intergenic not near genes chr3R 5627160 intergenic not near genes chr3R_11_5625001 chr3R_5625001 RAL-737 1593 chr3R 5698112 5698137 chr3R 5698207 5698232 12 91 5.5 3.5 4.5 2.2 120 chr3R 5698112 intron plx + chr3R 5698172 intron plx + chr3R 5698232 intron plx + chr3R_12_5695001 chr3R_5695001 RAL-737 1594 chr3R 5746013 5746045 chr3R 5746254 5746286 pogo 14 237 3.0 1.0 2.0 4.7 273 chr3R 5746013 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_14_5745001 chr3R_5745001 RAL-737 1595 chr3R 5747013 5747049 chr3R 5753204 5753209 diver 12 6188 2.0 5.0 3.5 2.7 6196 chr3R 5747013 intergenic Madm + chr3R 5750111 intergenic not near genes chr3R 5753209 intergenic CG2091 - chr3R_12_5750001 chr3R_5750001 RAL-737 1596 chr3R 5809131 5809145 chr3R 5809371 5809386 pogo 4 241 2.5 14.0 8.2 0.4 255 chr3R 5809131 3` UTR CG11000 + chr3R 5809258 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-737 1597 chr3R 5822377 5822413 chr3R 5823544 5823580 1360 9 1165 6.0 6.5 6.2 1.2 1203 chr3R 5822377 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-737 1598 chr3R 5927562 5927591 chr3R 5927802 5927831 pogo 13 236 4.5 5.0 4.8 2.2 269 chr3R 5927562 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-737 1599 chr3R 6012655 6012678 chr3R 6012733 6012737 13 76 6.0 8.0 7.0 1.6 82 chr3R 6012655 intergenic not near genes chr3R 6012696 intergenic not near genes chr3R 6012737 intergenic not near genes chr3R_13_6010001 chr3R_6010001 RAL-737 1600 chr3R 6015963 6015995 chr3R 6024444 6024446 Tirant 8 8477 2.5 5.0 3.8 1.7 8483 chr3R 6015963 intergenic not near genes chr3R 6020204 intergenic not near genes chr3R 6024446 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-737 1601 chr3R 6080160 6080185 chr3R 6080247 6080276 4 82 3.0 1.5 2.2 1.2 116 chr3R 6080160 intergenic not near genes chr3R 6080218 intergenic not near genes chr3R 6080276 intergenic not near genes chr3R_4_6080001 chr3R_6080001 RAL-737 1602 chr3R 6119123 6119157 chr3R 6119209 6119243 9 86 1.0 1.0 1.0 4.5 120 chr3R 6119123 intergenic not near genes chr3R 6119183 intergenic not near genes chr3R 6119243 intergenic not near genes chr3R_9_6115001 chr3R_6115001 RAL-737 1603 chr3R 6121171 6121189 chr3R 6121381 6121384 BS 7 209 0.0 8.0 4.0 1.4 213 chr3R 6121171 intergenic not near genes chr3R 6121278 intergenic not near genes chr3R 6121384 intergenic not near genes chr3R_7_6120001 chr3R_6120001 RAL-737 1604 chr3R 6158510 6158540 chr3R 6167093 6167116 Tirant 6 8578 6.0 3.0 4.5 1.1 8606 chr3R 6158510 intergenic not near genes chr3R 6162813 intergenic not near genes chr3R 6167116 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-737 1605 chr3R 6175173 6175205 chr3R 6182445 6182477 HMS-Beagle2 13 7269 5.5 6.0 5.8 1.9 7304 chr3R 6175173 intergenic Osi1 + chr3R 6178825 intron CR45194 + chr3R 6182477 intergenic CR45194 + chr3R_13_6175001 chr3R_6175001 RAL-737 1606 chr3R 6191174 6191201 chr3R 6191248 6191281 9 74 3.5 6.5 5.0 1.5 107 chr3R 6191174 intron NPFR + chr3R 6191228 intron NPFR + chr3R 6191281 intron NPFR + chr3R_9_6190001 chr3R_6190001 RAL-737 1607 chr3R 6461576 6461610 chr3R 6461657 6461684 6 77 3.5 3.5 3.5 1.3 108 chr3R 6461576 intergenic not near genes chr3R 6461630 intergenic not near genes chr3R 6461684 intergenic not near genes chr3R_6_6460001 chr3R_6460001 RAL-737 1608 chr3R 6510022 6510053 chr3R 6515103 6515134 jockey 13 5080 5.0 5.0 5.0 2.2 5112 chr3R 6510022 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515134 intergenic not near genes chr3R_13_6510001 chr3R_6510001 RAL-737 1609 chr3R 6578902 6578915 chr3R 6579008 6579035 5 112 4.5 6.0 5.2 0.8 133 chr3R 6578902 intron dpr11 - chr3R 6578968 intron dpr11 - chr3R 6579035 intron dpr11 - chr3R_5_6575001 chr3R_6575001 RAL-737 1610 chr3R 6737498 6737528 chr3R 6739285 6739315 Doc 8 1782 4.0 3.5 3.8 1.7 1817 chr3R 6737498 intron pb - chr3R 6738406 intron pb - chr3R 6739315 intron pb - chr3R_8_6735001 chr3R_6735001 RAL-737 1611 chr3R 6891250 6891271 chr3R 6891320 6891340 5 68 3.0 5.0 4.0 1.0 90 chr3R 6891250 intergenic not near genes chr3R 6891295 intergenic not near genes chr3R 6891340 intergenic not near genes chr3R_5_6890001 chr3R_6890001 RAL-737 1612 chr3R 6978881 6978908 chr3R 6978966 6978992 12 82 7.5 1.5 4.5 2.2 111 chr3R 6978881 intron Antp - chr3R 6978936 intron Antp - chr3R 6978992 intron Antp - chr3R_12_6975001 chr3R_6975001 RAL-737 1613 chr3R 7060253 7060284 chr3R 7060334 7060365 8 80 5.0 1.0 3.0 2.0 112 chr3R 7060253 3` UTR dj + chr3R 7060309 3` UTR dj + chr3R 7060365 3` UTR dj + chr3R_8_7060001 chr3R_7060001 RAL-737 1614 chr3R 7092793 7092798 chr3R 7093357 7093362 4 564 2.5 10.5 6.5 0.5 569 chr3R 7092793 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093362 3` UTR CR43685 - chr3R_4_7090001 chr3R_7090001 RAL-737 1615 chr3R 7092810 7092818 chr3R 7093347 7093382 7 555 1.0 6.0 3.5 1.6 572 chr3R 7092810 3` UTR CR43685 - chr3R 7093096 intron CR43685 - chr3R 7093382 3` UTR CR43685 - chr3R_7_7090001 chr3R_7090001 RAL-737 1616 chr3R 7126503 7126533 chr3R 7126598 7126628 9 95 0.5 4.5 2.5 2.6 125 chr3R 7126503 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126628 3` UTR CG10068 - chr3R_9_7125001 chr3R_7125001 RAL-737 1617 chr3R 7173679 7173710 chr3R 7173759 7173790 11 80 3.5 5.5 4.5 2.0 111 chr3R 7173679 intron sas + chr3R 7173734 intron sas + chr3R 7173790 intron sas + chr3R_11_7170001 chr3R_7170001 RAL-737 1618 chr3R 7410612 7410618 chr3R 7410682 7410687 5 77 0.5 5.0 2.8 1.3 75 chr3R 7410612 intergenic not near genes chr3R 7410650 intergenic not near genes chr3R 7410687 intergenic not near genes chr3R_5_7410001 chr3R_7410001 RAL-737 1619 chr3R 7418056 7418088 chr3R 7418373 7418405 8 316 4.5 3.5 4.0 1.6 349 chr3R 7418056 intergenic not near genes chr3R 7418230 intergenic not near genes chr3R 7418405 intergenic not near genes chr3R_8_7415001 chr3R_7415001 RAL-737 1620 chr3R 7438911 7438945 chr3R 7438989 7439023 13 73 1.5 3.5 2.5 3.7 112 chr3R 7438911 intergenic not near genes chr3R 7438967 intergenic not near genes chr3R 7439023 intergenic not near genes chr3R_13_7435001 chr3R_7435001 RAL-737 1621 chr3R 7447990 7448011 chr3R 7448068 7448089 5 78 5.5 7.5 6.5 0.7 99 chr3R 7447990 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448089 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-737 1622 chr3R 7536723 7536732 chr3R 7536878 7536910 4 170 25.0 27.5 26.2 0.1 187 chr3R 7536723 3` UTR alpha-Est4 - chr3R 7536816 exon alpha-Est4 - chr3R 7536910 exon alpha-Est4 - chr3R_4_7535001 chr3R_7535001 RAL-737 1623 chr3R 7589794 7589828 chr3R 7589914 7589927 8 110 3.5 5.0 4.2 1.5 133 chr3R 7589794 intron CG34127 - chr3R 7589860 intron CG34127 - chr3R 7589927 intron CG34127 - chr3R_8_7585001 chr3R_7585001 RAL-737 1624 chr3R 7619973 7620009 chr3R 7620062 7620098 9 89 2.0 3.0 2.5 2.6 125 chr3R 7619973 intron CG34127 - chr3R 7620036 intron CG34127 - chr3R 7620098 intron CG34127 - chr3R_9_7620001 chr3R_7620001 RAL-737 1625 chr3R 7625299 7625315 chr3R 7625747 7625763 9 448 6.5 2.0 4.2 1.7 464 chr3R 7625299 intron CG34127 - chr3R 7625531 intron CG34127 - chr3R 7625763 intron CG34127 - chr3R_9_7625001 chr3R_7625001 RAL-737 1626 chr3R 7655015 7655037 chr3R 7655086 7655086 11 72 5.0 3.0 4.0 2.2 71 chr3R 7655015 intergenic not near genes chr3R 7655050 intergenic not near genes chr3R 7655086 intergenic not near genes chr3R_11_7655001 chr3R_7655001 RAL-737 1627 chr3R 7677917 7677939 chr3R 7678030 7678047 8 111 4.0 8.0 6.0 1.1 130 chr3R 7677917 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678047 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-737 1628 chr3R 7694575 7694608 chr3R 7713636 7713669 invader3 11 19061 5.0 1.5 3.2 2.6 19094 chr3R 7694575 3` UTR Nlg1 + chr3R 7704122 intergenic not near genes chr3R 7713669 intergenic not near genes chr3R_11_7700001 chr3R_7700001 RAL-737 1629 chr3R 7729464 7729496 chr3R 7737402 7737434 Stalker2 13 7932 4.0 8.5 6.2 1.8 7970 chr3R 7729464 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_13_7730001 chr3R_7730001 RAL-737 1630 chr3R 7857643 7857674 chr3R 7857726 7857744 13 81 1.5 7.0 4.2 2.5 101 chr3R 7857643 3` UTR CG17816 - chr3R 7857694 3` UTR CG17816 - chr3R 7857744 3` UTR CG17816 - chr3R_13_7855001 chr3R_7855001 RAL-737 1631 chr3R 7973314 7973346 chr3R 7974376 7974408 1360 11 1062 5.0 6.0 5.5 1.7 1094 chr3R 7973314 intergenic not near genes chr3R 7973861 intergenic not near genes chr3R 7974408 3` UTR CD98hc - chr3R_11_7970001 chr3R_7970001 RAL-737 1632 chr3R 8090271 8090303 chr3R 8090448 8090480 18 175 3.5 5.5 4.5 3.3 209 chr3R 8090271 5` UTR CR44330 + chr3R 8090376 intergenic CR44330 + chr3R 8090480 intergenic CR44330 + chr3R_18_8090001 chr3R_8090001 RAL-737 1633 chr3R 8094408 8094441 chr3R 8099713 8099746 Transpac 15 5304 5.5 7.5 6.5 2.0 5338 chr3R 8094408 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099746 intron CG7900 + chr3R_15_8095001 chr3R_8095001 RAL-737 1634 chr3R 8101764 8101789 chr3R 8104848 8104873 G2 8 3082 3.0 5.5 4.2 1.5 3109 chr3R 8101764 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104873 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-737 1635 chr3R 8182655 8182688 chr3R 8182749 8182771 8 85 3.0 7.0 5.0 1.3 116 chr3R 8182655 intergenic not near genes chr3R 8182713 intergenic not near genes chr3R 8182771 intergenic not near genes chr3R_8_8180001 chr3R_8180001 RAL-737 1636 chr3R 8188386 8188526 chr3R 8188471 8188612 7 83 6.0 5.0 5.5 1.1 226 chr3R 8188386 intergenic not near genes chr3R 8188499 intergenic not near genes chr3R 8188612 intergenic not near genes chr3R_7_8185001 chr3R_8185001 RAL-737 1637 chr3R 8339247 8339247 chr3R 21907534 21907536 6 13568288 23.0 27.5 25.2 0.2 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-737 1638 chr3R 8376368 8376401 chr3R 8376766 8376798 7 400 40.5 25.0 32.8 0.2 430 chr3R 8376368 intron CG45263 - chr3R 8376583 intron CG45263 - chr3R 8376798 intron CG45263 - chr3R_7_8375001 chr3R_8375001 RAL-737 1639 chr3R 8393586 8393595 chr3R 8393663 8393679 4 82 3.0 5.0 4.0 0.8 93 chr3R 8393586 intron CG45263 - chr3R 8393632 intron CG45263 - chr3R 8393679 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-737 1640 chr3R 8393599 8393605 chr3R 8393655 8393689 4 77 3.0 4.0 3.5 0.9 90 chr3R 8393599 intron CG45263 - chr3R 8393644 intron CG45263 - chr3R 8393689 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-737 1641 chr3R 8403012 8403026 chr3R 8412173 8412190 roo 6 9164 6.5 3.5 5.0 1.0 9178 chr3R 8403012 intron CG45263 - chr3R 8407601 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-737 1642 chr3R 8403027 8403040 chr3R 8412172 8412206 roo 8 9158 3.0 3.5 3.2 1.9 9179 chr3R 8403027 intron CG45263 - chr3R 8407616 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-737 1643 chr3R 8418673 8418699 chr3R 8418777 8418781 4 97 2.5 4.5 3.5 0.9 108 chr3R 8418673 intron CG45263 - chr3R 8418727 intron CG45263 - chr3R 8418781 intron CG45263 - chr3R_4_8415001 chr3R_8415001 RAL-737 1644 chr3R 8541342 8541367 chr3R 8541423 8541448 6 78 1.5 4.5 3.0 1.5 106 chr3R 8541342 intergenic not near genes chr3R 8541395 intergenic not near genes chr3R 8541448 intergenic not near genes chr3R_6_8540001 chr3R_8540001 RAL-737 1645 chr3R 8570477 8570511 chr3R 8575113 8575129 HMS-Beagle 6 4630 7.0 1.5 4.2 1.2 4652 chr3R 8570477 intergenic not near genes chr3R 8572803 intergenic not near genes chr3R 8575129 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-737 1646 chr3R 8579091 8579109 chr3R 8579189 8579207 4 97 2.0 5.0 3.5 0.9 116 chr3R 8579091 intron 5-HT2B + chr3R 8579149 intron 5-HT2B + chr3R 8579207 intron 5-HT2B + chr3R_4_8575001 chr3R_8575001 RAL-737 1647 chr3R 8601776 8601797 chr3R 8610923 8610950 roo 4 9151 4.0 4.5 4.2 0.8 9174 chr3R 8601776 intron 5-HT2B + chr3R 8606363 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-737 1648 chr3R 8636944 8636964 chr3R 8637235 8637267 4 300 2.5 5.5 4.0 0.8 323 chr3R 8636944 intergenic not near genes chr3R 8637106 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_4_8635001 chr3R_8635001 RAL-737 1649 chr3R 8707384 8707388 chr3R 8709799 8709814 jockey 4 2423 2.5 5.0 3.8 0.8 2430 chr3R 8707384 intergenic not near genes chr3R 8708599 intergenic not near genes chr3R 8709814 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-737 1650 chr3R 8745750 8745775 chr3R 8745861 8745881 9 110 3.5 5.5 4.5 1.6 131 chr3R 8745750 intron CG9801 - chr3R 8745816 intron CG9801 - chr3R 8745881 intron CG9801 - chr3R_9_8745001 chr3R_8745001 RAL-737 1651 chr3R 8756287 8756320 chr3R 8756363 8756395 18 73 1.5 3.5 2.5 5.1 108 chr3R 8756287 intron,intron CG11768 -,CG34135 - chr3R 8756341 intron,intron CG11768 -,CG34135 - chr3R 8756395 intron,intron CG11768 -,CG34135 - chr3R_18_8755001 chr3R_8755001 RAL-737 1652 chr3R 8894869 8894898 chr3R 8896025 8896054 1360 12 1152 5.5 5.5 5.5 1.8 1185 chr3R 8894869 intron pyd - chr3R 8895462 intron pyd - chr3R 8896054 intron pyd - chr3R_12_8895001 chr3R_8895001 RAL-737 1653 chr3R 8960575 8960606 chr3R 8960652 8960652 10 72 2.0 3.5 2.8 2.6 77 chr3R 8960575 intron CG11966 - chr3R 8960614 intron CG11966 - chr3R 8960652 intron CG11966 - chr3R_10_8960001 chr3R_8960001 RAL-737 1654 chr3R 8997376 8997395 chr3R 8997466 8997485 8 89 3.0 11.0 7.0 1.0 109 chr3R 8997376 intron CG31100 - chr3R 8997430 intron CG31100 - chr3R 8997485 intron CG31100 - chr3R_8_8995001 chr3R_8995001 RAL-737 1655 chr3R 9036372 9036404 chr3R 9036450 9036476 11 75 6.0 1.5 3.8 2.3 104 chr3R 9036372 intron neur - chr3R 9036424 intron neur - chr3R 9036476 intron neur - chr3R_11_9035001 chr3R_9035001 RAL-737 1656 chr3R 9083141 9083174 chr3R 9083226 9083233 17 79 1.0 4.5 2.8 4.5 92 chr3R 9083141 intron pum - chr3R 9083187 intron pum - chr3R 9083233 intron pum - chr3R_17_9080001 chr3R_9080001 RAL-737 1657 chr3R 9099474 9099482 chr3R 9099557 9099565 6 83 0.0 10.0 5.0 1.0 91 chr3R 9099474 intron pum - chr3R 9099520 intron pum - chr3R 9099565 intron pum - chr3R_6_9095001 chr3R_9095001 RAL-737 1658 chr3R 9101838 9101872 chr3R 9101936 9101970 10 93 3.5 6.5 5.0 1.7 132 chr3R 9101838 intron pum - chr3R 9101904 intron pum - chr3R 9101970 intron pum - chr3R_10_9100001 chr3R_9100001 RAL-737 1659 chr3R 9108864 9108883 chr3R 9108940 9108959 10 76 9.5 3.0 6.2 1.4 95 chr3R 9108864 intron pum - chr3R 9108912 intron pum - chr3R 9108959 intron pum - chr3R_10_9105001 chr3R_9105001 RAL-737 1660 chr3R 9149443 9149478 chr3R 9149523 9149557 9 80 2.0 2.0 2.0 3.0 114 chr3R 9149443 intron pum - chr3R 9149500 intron pum - chr3R 9149557 intron pum - chr3R_9_9145001 chr3R_9145001 RAL-737 1661 chr3R 9278792 9278799 chr3R 9284044 9284047 Rt1a 4 5255 11.0 10.0 10.5 0.3 5255 chr3R 9278792 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284047 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-737 1662 chr3R 9278800 9278807 chr3R 9284039 9284063 Rt1a 4 5248 10.5 8.5 9.5 0.4 5263 chr3R 9278800 intergenic not near genes chr3R 9281432 intergenic not near genes chr3R 9284063 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-737 1663 chr3R 9319573 9319595 chr3R 9320008 9320030 jockey 6 435 12.5 4.0 8.2 0.7 457 chr3R 9319573 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320030 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-737 1664 chr3R 9319596 9319606 chr3R 9320006 9320041 jockey 7 427 9.0 4.0 6.5 0.9 445 chr3R 9319596 intron CG8861 - chr3R 9319818 intron CG8861 - chr3R 9320041 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-737 1665 chr3R 9361819 9361842 chr3R 9362060 9362068 pogo 11 240 4.0 4.5 4.2 2.1 249 chr3R 9361819 3` UTR CG45050 + chr3R 9361944 3` UTR CG45050 + chr3R 9362068 3` UTR CG45050 + chr3R_11_9360001 chr3R_9360001 RAL-737 1666 chr3R 9382820 9382847 chr3R 9382944 9382972 10 122 6.5 6.0 6.2 1.4 152 chr3R 9382820 intron FER - chr3R 9382896 intron FER - chr3R 9382972 intron FER - chr3R_10_9380001 chr3R_9380001 RAL-737 1667 chr3R 9447444 9447460 chr3R 9447548 9447564 5 103 7.5 7.5 7.5 0.6 120 chr3R 9447444 intron ps + chr3R 9447504 intron ps + chr3R 9447564 intron ps + chr3R_5_9445001 chr3R_9445001 RAL-737 1668 chr3R 9611877 9611898 chr3R 9611959 9611980 8 82 6.0 0.5 3.2 1.9 103 chr3R 9611877 intron CG8312 + chr3R 9611928 intron CG8312 + chr3R 9611980 intron CG8312 + chr3R_8_9610001 chr3R_9610001 RAL-737 1669 chr3R 9857812 9857837 chr3R 9858252 9858256 7 434 2.5 6.0 4.2 1.3 444 chr3R 9857812 intron Teh1 - chr3R 9858034 intron Teh1 - chr3R 9858256 intron Teh1 - chr3R_7_9855001 chr3R_9855001 RAL-737 1670 chr3R 9936873 9936905 chr3R 9936949 9936981 9 75 5.5 2.5 4.0 1.8 108 chr3R 9936873 intron Glut4EF + chr3R 9936927 intron Glut4EF + chr3R 9936981 intron Glut4EF + chr3R_9_9935001 chr3R_9935001 RAL-737 1671 chr3R 10231791 10231815 chr3R 10237368 10237392 mdg3 10 5575 7.0 8.5 7.8 1.1 5601 chr3R 10231791 intron CG42795 + chr3R 10234592 intron CG42795 + chr3R 10237392 intron CG42795 + chr3R_10_10230001 chr3R_10230001 RAL-737 1672 chr3R 10306950 10306971 chr3R 10312209 10312243 18 5262 34.5 32.0 33.2 0.5 5293 chr3R 10306950 exon CG43143 + chr3R 10309596 exon CG6293 - chr3R 10312243 3` UTR Bruce - chr3R_18_10305001 chr3R_10305001 RAL-737 1673 chr3R 10394074 10394096 chr3R 10394173 10394186 9 97 7.5 4.5 6.0 1.3 112 chr3R 10394074 intron cwo + chr3R 10394130 intron cwo + chr3R 10394186 intron cwo + chr3R_9_10390001 chr3R_10390001 RAL-737 1674 chr3R 10394097 10394101 chr3R 10394171 10394200 4 90 6.5 4.5 5.5 0.6 103 chr3R 10394097 intron cwo + chr3R 10394148 intron cwo + chr3R 10394200 intron cwo + chr3R_4_10390001 chr3R_10390001 RAL-737 1675 chr3R 10526308 10526314 chr3R 10526571 10526577 4 263 6.0 4.5 5.2 0.6 269 chr3R 10526308 intron hth - chr3R 10526442 intron hth - chr3R 10526577 intron hth - chr3R_4_10525001 chr3R_10525001 RAL-737 1676 chr3R 10651812 10651844 chr3R 10651911 10651943 13 96 3.0 5.0 4.0 2.6 131 chr3R 10651812 intergenic not near genes chr3R 10651878 intergenic not near genes chr3R 10651943 intergenic not near genes chr3R_13_10650001 chr3R_10650001 RAL-737 1677 chr3R 10723767 10723792 chr3R 10723854 10723864 9 83 4.5 1.0 2.8 2.4 97 chr3R 10723767 intergenic not near genes chr3R 10723816 intergenic not near genes chr3R 10723864 intergenic not near genes chr3R_9_10720001 chr3R_10720001 RAL-737 1678 chr3R 10727642 10727667 chr3R 10727722 10727745 5 79 8.5 4.5 6.5 0.7 103 chr3R 10727642 intergenic not near genes chr3R 10727694 intergenic not near genes chr3R 10727745 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-737 1679 chr3R 10732325 10732341 chr3R 10733197 10733213 9 872 8.5 7.0 7.8 1.0 888 chr3R 10732325 intergenic not near genes chr3R 10732769 intergenic not near genes chr3R 10733213 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-737 1680 chr3R 10904909 10904937 chr3R 10905112 10905141 7 203 6.0 7.0 6.5 0.9 232 chr3R 10904909 intergenic not near genes chr3R 10905025 intergenic not near genes chr3R 10905141 intergenic not near genes chr3R_7_10905001 chr3R_10905001 RAL-737 1681 chr3R 10919690 10919716 chr3R 10919768 10919793 5 78 5.5 2.0 3.8 1.0 103 chr3R 10919690 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-737 1682 chr3R 10920043 10920078 chr3R 10920121 10920156 16 77 4.0 4.5 4.2 3.1 113 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_16_10920001 chr3R_10920001 RAL-737 1683 chr3R 10971482 10971515 chr3R 10971573 10971604 10 86 3.5 5.5 4.5 1.8 122 chr3R 10971482 intergenic not near genes chr3R 10971543 intergenic not near genes chr3R 10971604 intergenic not near genes chr3R_10_10970001 chr3R_10970001 RAL-737 1684 chr3R 11043098 11043108 chr3R 11043203 11043214 5 106 4.0 5.5 4.8 0.9 116 chr3R 11043098 intron CG34114 + chr3R 11043156 intron CG34114 + chr3R 11043214 intron CG34114 + chr3R_5_11040001 chr3R_11040001 RAL-737 1685 chr3R 11087437 11087465 chr3R 11087512 11087525 11 68 1.5 3.5 2.5 3.1 88 chr3R 11087437 intergenic not near genes chr3R 11087481 intergenic not near genes chr3R 11087525 intergenic not near genes chr3R_11_11085001 chr3R_11085001 RAL-737 1686 chr3R 11099657 11099689 chr3R 11099789 11099802 8 128 2.5 2.5 2.5 2.3 145 chr3R 11099657 intergenic not near genes chr3R 11099730 intergenic not near genes chr3R 11099802 intergenic not near genes chr3R_8_11095001 chr3R_11095001 RAL-737 1687 chr3R 11102326 11102354 chr3R 11102407 11102408 4 74 8.0 4.5 6.2 0.6 82 chr3R 11102326 intergenic not near genes chr3R 11102367 intergenic not near genes chr3R 11102408 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-737 1688 chr3R 11103171 11103180 chr3R 11103253 11103262 4 82 0.5 0.0 0.2 3.3 91 chr3R 11103171 intergenic not near genes chr3R 11103216 intergenic not near genes chr3R 11103262 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-737 1689 chr3R 11197987 11198018 chr3R 11198081 11198117 9 95 4.0 1.5 2.8 2.4 130 chr3R 11197987 intron cu + chr3R 11198052 intron cu + chr3R 11198117 intron cu + chr3R_9_11195001 chr3R_11195001 RAL-737 1690 chr3R 11220276 11220289 chr3R 11220395 11220408 5 118 10.5 2.5 6.5 0.7 132 chr3R 11220276 3` UTR CG6693 - chr3R 11220342 3` UTR CG6693 - chr3R 11220408 3` UTR CG6693 - chr3R_5_11220001 chr3R_11220001 RAL-737 1691 chr3R 11220290 11220315 chr3R 11220393 11220410 9 105 2.5 2.0 2.2 2.8 120 chr3R 11220290 3` UTR CG6693 - chr3R 11220350 3` UTR CG6693 - chr3R 11220410 3` UTR CG6693 - chr3R_9_11220001 chr3R_11220001 RAL-737 1692 chr3R 11307189 11307221 chr3R 11307276 11307308 5 82 3.5 1.5 2.5 1.4 119 chr3R 11307189 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307308 intergenic not near genes chr3R_5_11305001 chr3R_11305001 RAL-737 1693 chr3R 11342570 11342572 chr3R 11342634 11342648 4 71 4.5 5.0 4.8 0.7 78 chr3R 11342570 intron pros + chr3R 11342609 intron pros + chr3R 11342648 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-737 1694 chr3R 11379235 11379269 chr3R 11388389 11388424 roo 19 9152 6.0 4.0 5.0 3.2 9189 chr3R 11379235 intron pros + chr3R 11383830 intron pros + chr3R 11388424 intron pros + chr3R_19_11380001 chr3R_11380001 RAL-737 1695 chr3R 11404953 11404966 chr3R 11405026 11405041 8 78 8.0 7.0 7.5 0.9 88 chr3R 11404953 3` UTR pros + chr3R 11404997 3` UTR pros + chr3R 11405041 3` UTR pros + chr3R_8_11400001 chr3R_11400001 RAL-737 1696 chr3R 11442343 11442361 chr3R 11442528 11442546 4 183 6.0 2.5 4.2 0.8 203 chr3R 11442343 intron,intron sals -,CG17230 + chr3R 11442444 intron,intron sals -,CG17230 + chr3R 11442546 intron,intron sals -,CG17230 + chr3R_4_11440001 chr3R_11440001 RAL-737 1697 chr3R 11518811 11518838 chr3R 11518902 11518927 14 90 7.5 6.5 7.0 1.8 116 chr3R 11518811 intergenic not near genes chr3R 11518869 intergenic not near genes chr3R 11518927 intergenic not near genes chr3R_14_11515001 chr3R_11515001 RAL-737 1698 chr3R 11664790 11664816 chr3R 11664882 11664908 9 91 2.5 3.5 3.0 2.2 118 chr3R 11664790 intron CG42327 + chr3R 11664849 intron CG42327 + chr3R 11664908 intron CG42327 + chr3R_9_11660001 chr3R_11660001 RAL-737 1699 chr3R 11694726 11694756 chr3R 11694819 11694834 10 91 3.5 5.5 4.5 1.8 108 chr3R 11694726 intergenic Fer3 - chr3R 11694780 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_10_11690001 chr3R_11690001 RAL-737 1700 chr3R 11734166 11734187 chr3R 11734280 11734299 6 113 6.0 4.0 5.0 1.0 133 chr3R 11734166 intergenic not near genes chr3R 11734232 intergenic not near genes chr3R 11734299 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-737 1701 chr3R 11740435 11740467 chr3R 11743542 11743574 32 3112 74.5 68.0 71.2 0.4 3139 chr3R 11740435 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743574 exon CG14722 + chr3R_32_11740001 chr3R_11740001 RAL-737 1702 chr3R 11841060 11841099 chr3R 11846251 11846281 BS 8 5185 2.5 3.5 3.0 2.0 5221 chr3R 11841060 intron CG6959 - chr3R 11843670 intron CG6959 - chr3R 11846281 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-737 1703 chr3R 11853768 11853805 chr3R 11853872 11853886 21 104 7.0 5.5 6.2 2.9 118 chr3R 11853768 intron CG6959 - chr3R 11853827 intron CG6959 - chr3R 11853886 intron CG6959 - chr3R_21_11850001 chr3R_11850001 RAL-737 1704 chr3R 12022887 12022916 chr3R 12025064 12025080 pogo 16 2173 4.5 7.0 5.8 2.4 2193 chr3R 12022887 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025080 intergenic not near genes chr3R_16_12020001 chr3R_12020001 RAL-737 1705 chr3R 12045175 12045200 chr3R 12045251 12045268 10 70 3.5 4.0 3.8 2.1 93 chr3R 12045175 intergenic not near genes chr3R 12045222 intergenic not near genes chr3R 12045268 intergenic not near genes chr3R_10_12045001 chr3R_12045001 RAL-737 1706 chr3R 12081999 12082028 chr3R 12082075 12082104 15 73 2.5 2.5 2.5 4.3 105 chr3R 12081999 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_15_12080001 chr3R_12080001 RAL-737 1707 chr3R 12111905 12111920 chr3R 12111981 12111990 7 75 0.0 6.5 3.2 1.7 85 chr3R 12111905 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12111990 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-737 1708 chr3R 12134962 12134981 chr3R 12135100 12135119 9 135 2.5 1.0 1.8 3.2 157 chr3R 12134962 intergenic not near genes chr3R 12135040 intergenic not near genes chr3R 12135119 intergenic not near genes chr3R_9_12135001 chr3R_12135001 RAL-737 1709 chr3R 12154027 12154028 chr3R 12154485 12154489 6 448 31.0 12.5 21.8 0.3 462 chr3R 12154027 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154489 intron dpr15 - chr3R_6_12150001 chr3R_12150001 RAL-737 1710 chr3R 12202306 12202318 chr3R 12202412 12202427 7 106 0.5 8.5 4.5 1.3 121 chr3R 12202306 intergenic not near genes chr3R 12202366 intergenic not near genes chr3R 12202427 intergenic not near genes chr3R_7_12200001 chr3R_12200001 RAL-737 1711 chr3R 12267854 12267886 chr3R 12267934 12267965 10 80 2.0 4.0 3.0 2.5 111 chr3R 12267854 intron svp + chr3R 12267910 intron svp + chr3R 12267965 intron svp + chr3R_10_12265001 chr3R_12265001 RAL-737 1712 chr3R 12321975 12322003 chr3R 12322054 12322079 6 79 2.5 5.0 3.8 1.2 104 chr3R 12321975 intergenic not near genes chr3R 12322027 intergenic not near genes chr3R 12322079 intergenic not near genes chr3R_6_12320001 chr3R_12320001 RAL-737 1713 chr3R 12398617 12398630 chr3R 12405591 12405604 5 6974 16.0 15.5 15.8 0.3 6987 chr3R 12398617 intron CG34402 + chr3R 12402110 exon CG34402 + chr3R 12405604 intron Cyp9f2 - chr3R_5_12400001 chr3R_12400001 RAL-737 1714 chr3R 12516067 12516088 chr3R 12516162 12516183 8 94 5.0 5.0 5.0 1.3 116 chr3R 12516067 intron Octbeta3R - chr3R 12516125 intron Octbeta3R - chr3R 12516183 intron Octbeta3R - chr3R_8_12515001 chr3R_12515001 RAL-737 1715 chr3R 12599404 12599407 chr3R 12599453 12599490 4 71 3.5 3.0 3.2 1.0 86 chr3R 12599404 intergenic not near genes chr3R 12599447 intergenic not near genes chr3R 12599490 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-737 1716 chr3R 12735805 12735832 chr3R 12735893 12735930 7 96 4.0 3.0 3.5 1.6 125 chr3R 12735805 intergenic not near genes chr3R 12735868 intergenic not near genes chr3R 12735930 intergenic not near genes chr3R_7_12735001 chr3R_12735001 RAL-737 1717 chr3R 12763123 12763155 chr3R 12763200 12763232 11 77 0.0 4.5 2.2 3.4 109 chr3R 12763123 intron beat-Vc - chr3R 12763178 intron beat-Vc - chr3R 12763232 intron beat-Vc - chr3R_11_12760001 chr3R_12760001 RAL-737 1718 chr3R 12819031 12819051 chr3R 12819110 12819134 12 82 5.0 3.0 4.0 2.4 103 chr3R 12819031 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819134 intergenic not near genes chr3R_12_12815001 chr3R_12815001 RAL-737 1719 chr3R 12825838 12825845 chr3R 12825916 12825925 4 80 4.0 5.0 4.5 0.7 87 chr3R 12825838 intergenic not near genes chr3R 12825882 intergenic not near genes chr3R 12825925 intergenic not near genes chr3R_4_12825001 chr3R_12825001 RAL-737 1720 chr3R 12866488 12866511 chr3R 12866639 12866662 9 151 3.5 7.0 5.2 1.5 174 chr3R 12866488 intergenic not near genes chr3R 12866575 intergenic not near genes chr3R 12866662 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-737 1721 chr3R 12885107 12885128 chr3R 12885214 12885229 7 106 7.0 5.0 6.0 1.0 122 chr3R 12885107 intergenic not near genes chr3R 12885168 intergenic not near genes chr3R 12885229 intergenic not near genes chr3R_7_12885001 chr3R_12885001 RAL-737 1722 chr3R 12894593 12894614 chr3R 12894706 12894727 11 113 0.0 1.0 0.5 7.3 134 chr3R 12894593 intergenic not near genes chr3R 12894660 intergenic not near genes chr3R 12894727 intergenic not near genes chr3R_11_12890001 chr3R_12890001 RAL-737 1723 chr3R 12920168 12920184 chr3R 12925354 12925363 copia 5 5189 0.5 4.0 2.2 1.6 5195 chr3R 12920168 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925363 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-737 1724 chr3R 12947288 12947318 chr3R 12947450 12947456 6 157 3.5 3.0 3.2 1.4 168 chr3R 12947288 intergenic not near genes chr3R 12947372 intergenic not near genes chr3R 12947456 intergenic not near genes chr3R_6_12945001 chr3R_12945001 RAL-737 1725 chr3R 12972555 12972584 chr3R 12972694 12972723 9 139 3.0 3.0 3.0 2.2 168 chr3R 12972555 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972723 intron CG7381 - chr3R_9_12970001 chr3R_12970001 RAL-737 1726 chr3R 13064783 13064795 chr3R 13064882 13064894 6 99 5.5 0.0 2.8 1.6 111 chr3R 13064783 intron sim + chr3R 13064838 intron sim + chr3R 13064894 intron sim + chr3R_6_13060001 chr3R_13060001 RAL-737 1727 chr3R 13067854 13067870 chr3R 13067920 13067922 8 69 4.0 3.0 3.5 1.8 68 chr3R 13067854 intron sim + chr3R 13067888 intron sim + chr3R 13067922 intron sim + chr3R_8_13065001 chr3R_13065001 RAL-737 1728 chr3R 13075362 13075386 chr3R 13075443 13075466 12 81 2.0 4.0 3.0 3.0 104 chr3R 13075362 intron sim + chr3R 13075414 intron sim + chr3R 13075466 intron sim + chr3R_12_13075001 chr3R_13075001 RAL-737 1729 chr3R 13135837 13135852 chr3R 13138002 13138006 pogo 4 2158 4.0 5.5 4.8 0.7 2169 chr3R 13135837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136922 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138006 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-737 1730 chr3R 13143044 13143065 chr3R 13148615 13148641 mdg3 6 5575 2.5 8.0 5.2 1.0 5597 chr3R 13143044 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-737 1731 chr3R 7773344 7773344 chr3R 13217322 13217322 4 5443978 20.0 11.5 15.8 0.2 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-737 1732 chr3R 13314119 13314129 chr3R 13318887 13318917 Doc 4 4776 2.0 5.5 3.8 0.8 4798 chr3R 13314119 intergenic not near genes chr3R 13316518 intergenic not near genes chr3R 13318917 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-737 1733 chr3R 13349002 13349034 chr3R 13349078 13349110 9 73 3.5 3.0 3.2 2.1 108 chr3R 13349002 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349110 intergenic not near genes chr3R_9_13345001 chr3R_13345001 RAL-737 1734 chr3R 13364636 13364650 chr3R 13364720 13364733 6 84 2.5 0.0 1.2 2.7 97 chr3R 13364636 intron poly - chr3R 13364684 intron poly - chr3R 13364733 intron poly - chr3R_6_13360001 chr3R_13360001 RAL-737 1735 chr3R 13428882 13428916 chr3R 13428995 13429029 10 120 34.5 42.0 38.2 0.3 147 chr3R 13428882 3` UTR yrt - chr3R 13428956 3` UTR yrt - chr3R 13429029 3` UTR yrt - chr3R_10_13425001 chr3R_13425001 RAL-737 1736 chr3R 13435392 13435416 chr3R 13435562 13435591 9 172 6.5 5.0 5.8 1.3 199 chr3R 13435392 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435591 intergenic not near genes chr3R_9_13435001 chr3R_13435001 RAL-737 1737 chr3R 13603057 13603350 chr3R 13603147 13603442 10 90 5.0 4.0 4.5 1.8 385 chr3R 13603057 intergenic not near genes chr3R 13603250 intergenic not near genes chr3R 13603442 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-737 1738 chr3R 13604059 13604089 chr3R 13604294 13604324 16 234 3.5 3.0 3.2 3.8 265 chr3R 13604059 intergenic not near genes chr3R 13604192 intergenic not near genes chr3R 13604324 intergenic not near genes chr3R_16_13600001 chr3R_13600001 RAL-737 1739 chr3R 13606705 13606736 chr3R 13606851 13606883 7 144 1.0 2.5 1.8 2.5 178 chr3R 13606705 intergenic CG9759 - chr3R 13606794 intergenic CG9759 - chr3R 13606883 intergenic CG9759 - chr3R_7_13605001 chr3R_13605001 RAL-737 1740 chr3R 13625697 13625723 chr3R 13625778 13625803 9 81 2.0 3.0 2.5 2.6 106 chr3R 13625697 intergenic not near genes chr3R 13625750 intergenic not near genes chr3R 13625803 intergenic not near genes chr3R_9_13625001 chr3R_13625001 RAL-737 1741 chr3R 13659723 13659840 chr3R 13659829 13659928 6 100 0.0 0.0 0.0 6.0 205 chr3R 13659723 intron Hrb87F - chr3R 13659826 intron Hrb87F - chr3R 13659928 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-737 1742 chr3R 13672939 13672971 chr3R 13673017 13673049 13 78 7.5 5.5 6.5 1.7 110 chr3R 13672939 intron Task6 - chr3R 13672994 intron Task6 - chr3R 13673049 intron Task6 - chr3R_13_13670001 chr3R_13670001 RAL-737 1743 chr3R 13693028 13693028 chr3R 21907534 21907536 6 8214507 28.0 27.5 27.8 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-737 1744 chr3R 13719951 13719982 chr3R 13720410 13720438 7 456 1.0 4.5 2.8 1.8 487 chr3R 13719951 intron CG34383 + chr3R 13720194 intron CG34383 + chr3R 13720438 intron CG34383 + chr3R_7_13720001 chr3R_13720001 RAL-737 1745 chr3R 11988049 11988060 chr3R 13731610 13731615 5 1743556 18.5 23.5 21.0 0.2 1743566 chr3R 11988049 intron mfas - chr3R 12859832 intergenic not near genes chr3R 13731615 intron CG34383 + chr3R_5_12855001 chr3R_12855001 RAL-737 1746 chr3R 13736058 13736086 chr3R 13736147 13736176 10 82 2.0 3.5 2.8 2.6 118 chr3R 13736058 intron CG34383 + chr3R 13736117 intron CG34383 + chr3R 13736176 intron CG34383 + chr3R_10_13735001 chr3R_13735001 RAL-737 1747 chr3R 13830192 13830201 chr3R 13830281 13830293 7 91 9.0 3.5 6.2 1.0 101 chr3R 13830192 intergenic not near genes chr3R 13830242 intergenic not near genes chr3R 13830293 intergenic not near genes chr3R_7_13830001 chr3R_13830001 RAL-737 1748 chr3R 13896061 13896081 chr3R 13896551 13896570 7 486 2.0 0.0 1.0 3.5 509 chr3R 13896061 intergenic not near genes chr3R 13896316 intergenic not near genes chr3R 13896570 intergenic not near genes chr3R_7_13895001 chr3R_13895001 RAL-737 1749 chr3R 13915686 13915714 chr3R 13916028 13916033 10 337 3.0 6.0 4.5 1.8 347 chr3R 13915686 intergenic not near genes chr3R 13915860 intergenic not near genes chr3R 13916033 intergenic not near genes chr3R_10_13915001 chr3R_13915001 RAL-737 1750 chr3R 13916313 13916341 chr3R 13916396 13916426 11 83 4.0 5.5 4.8 1.9 113 chr3R 13916313 intergenic not near genes chr3R 13916370 intergenic not near genes chr3R 13916426 intergenic not near genes chr3R_11_13915001 chr3R_13915001 RAL-737 1751 chr3R 13926345 13926375 chr3R 13926431 13926461 10 84 1.5 2.5 2.0 3.3 116 chr3R 13926345 intergenic not near genes chr3R 13926403 intergenic not near genes chr3R 13926461 intergenic not near genes chr3R_10_13925001 chr3R_13925001 RAL-737 1752 chr3R 13949251 13949253 chr3R 13949325 13949331 6 77 1.5 7.0 4.2 1.2 80 chr3R 13949251 3` UTR CG31517 + chr3R 13949291 3` UTR CG31517 + chr3R 13949331 intron CG31517 + chr3R_6_13945001 chr3R_13945001 RAL-737 1753 chr3R 13975371 13975404 chr3R 13975451 13975484 17 77 5.0 4.0 4.5 3.1 113 chr3R 13975371 intron rdx - chr3R 13975428 intron rdx - chr3R 13975484 intron rdx - chr3R_17_13975001 chr3R_13975001 RAL-737 1754 chr3R 14014279 14014305 chr3R 14014411 14014437 4 132 1.5 0.0 0.8 2.2 158 chr3R 14014279 intron rdx - chr3R 14014358 intron rdx - chr3R 14014437 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-737 1755 chr3R 14021640 14021650 chr3R 14023465 14023475 S-element 7 1825 7.5 4.0 5.8 1.0 1835 chr3R 14021640 intron rdx - chr3R 14022558 intron rdx - chr3R 14023475 intron rdx - chr3R_7_14020001 chr3R_14020001 RAL-737 1756 chr3R 14035313 14035330 chr3R 14035393 14035402 9 79 4.0 4.5 4.2 1.7 89 chr3R 14035313 intron CG9922 - chr3R 14035358 intron CG9922 - chr3R 14035402 intron CG9922 - chr3R_9_14035001 chr3R_14035001 RAL-737 1757 chr3R 14037153 14037188 chr3R 14043067 14043078 6 5894 35.0 38.5 36.8 0.2 5925 chr3R 14037153 intergenic not near genes chr3R 14040116 intergenic not near genes chr3R 14043078 intergenic not near genes chr3R_6_14040001 chr3R_14040001 RAL-737 1758 chr3R 14058123 14058154 chr3R 14058243 14058274 15 118 2.5 2.0 2.2 4.7 151 chr3R 14058123 intron foxo + chr3R 14058198 intron foxo + chr3R 14058274 intron foxo + chr3R_15_14055001 chr3R_14055001 RAL-737 1759 chr3R 14062165 14062194 chr3R 14062241 14062270 6 75 7.0 2.0 4.5 1.1 105 chr3R 14062165 intron foxo + chr3R 14062218 intron foxo + chr3R 14062270 intron foxo + chr3R_6_14060001 chr3R_14060001 RAL-737 1760 chr3R 14067143 14067156 chr3R 14067222 14067230 6 78 7.0 3.0 5.0 1.0 87 chr3R 14067143 exon foxo + chr3R 14067186 intron foxo + chr3R 14067230 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-737 1761 chr3R 14109093 14109113 chr3R 14109164 14109194 11 79 1.0 1.0 1.0 5.5 101 chr3R 14109093 intergenic CR44237 -,Or88a + chr3R 14109144 intergenic CR44237 -,Or88a + chr3R 14109194 intergenic CR44237 -,Or88a + chr3R_11_14105001 chr3R_14105001 RAL-737 1762 chr3R 14117436 14117473 chr3R 14117512 14117543 14 75 4.5 3.0 3.8 2.9 107 chr3R 14117436 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117543 intron Kif19A - chr3R_14_14115001 chr3R_14115001 RAL-737 1763 chr3R 14169741 14169765 chr3R 14169824 14169828 13 81 1.5 6.0 3.8 2.7 87 chr3R 14169741 3` UTR Dop1R1 - chr3R 14169784 3` UTR Dop1R1 - chr3R 14169828 3` UTR Dop1R1 - chr3R_13_14165001 chr3R_14165001 RAL-737 1764 chr3R 14180811 14180843 chr3R 14185576 14185587 F-element 6 4757 5.0 0.5 2.8 1.6 4776 chr3R 14180811 intron Dop1R1 - chr3R 14183199 intron Dop1R1 - chr3R 14185587 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-737 1765 chr3R 14257349 14257367 chr3R 14257437 14257466 10 92 3.5 3.5 3.5 2.2 117 chr3R 14257349 intron Aats-met - chr3R 14257408 intron Aats-met - chr3R 14257466 intron Aats-met - chr3R_10_14255001 chr3R_14255001 RAL-737 1766 chr3R 14281085 14281117 chr3R 14281162 14281187 13 70 4.5 9.5 7.0 1.6 102 chr3R 14281085 intron trx - chr3R 14281136 intron trx - chr3R 14281187 intron trx - chr3R_13_14280001 chr3R_14280001 RAL-737 1767 chr3R 14313630 14313658 chr3R 14313725 14313754 9 94 2.0 8.0 5.0 1.5 124 chr3R 14313630 intron CG31321 + chr3R 14313692 intron CG31321 + chr3R 14313754 intron CG31321 + chr3R_9_14310001 chr3R_14310001 RAL-737 1768 chr3R 14363726 14363744 chr3R 14363808 14363826 7 80 6.0 4.5 5.2 1.1 100 chr3R 14363726 intron NK7.1 - chr3R 14363776 intron NK7.1 - chr3R 14363826 intron NK7.1 - chr3R_7_14360001 chr3R_14360001 RAL-737 1769 chr3R 14363745 14363756 chr3R 14363805 14363835 9 71 3.5 4.5 4.0 1.8 90 chr3R 14363745 intron NK7.1 - chr3R 14363790 intron NK7.1 - chr3R 14363835 intron NK7.1 - chr3R_9_14360001 chr3R_14360001 RAL-737 1770 chr3R 14526340 14526364 chr3R 14526520 14526544 6 178 9.5 8.0 8.8 0.6 204 chr3R 14526340 intron Pde6 - chr3R 14526442 intron Pde6 - chr3R 14526544 intron Pde6 - chr3R_6_14525001 chr3R_14525001 RAL-737 1771 chr3R 14549039 14549050 chr3R 14549125 14549136 5 87 15.0 9.5 12.2 0.4 97 chr3R 14549039 intron Pde6 - chr3R 14549088 intron Pde6 - chr3R 14549136 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-737 1772 chr3R 14556585 14556611 chr3R 14556676 14556702 12 88 3.0 1.5 2.2 3.8 117 chr3R 14556585 intron Pde6 - chr3R 14556644 intron Pde6 - chr3R 14556702 intron Pde6 - chr3R_12_14555001 chr3R_14555001 RAL-737 1773 chr3R 14560660 14560689 chr3R 14560855 14560884 13 195 6.0 6.0 6.0 1.9 224 chr3R 14560660 intergenic CG14850 + chr3R 14560772 intergenic CG14850 + chr3R 14560884 intergenic CG14850 + chr3R_13_14560001 chr3R_14560001 RAL-737 1774 chr3R 14704382 14704414 chr3R 14704459 14704490 11 74 12.0 14.0 13.0 0.8 108 chr3R 14704382 intron kibra - chr3R 14704436 intron kibra - chr3R 14704490 intron kibra - chr3R_11_14700001 chr3R_14700001 RAL-737 1775 chr3R 14771694 14771709 chr3R 14772245 14772260 4 551 37.0 23.0 30.0 0.1 566 chr3R 14771694 intron jvl + chr3R 14771977 intron jvl + chr3R 14772260 intron jvl + chr3R_4_14770001 chr3R_14770001 RAL-737 1776 chr3R 14851471 14851505 chr3R 14851608 14851642 10 137 11.5 9.0 10.2 0.9 171 chr3R 14851471 intron btsz - chr3R 14851556 intron btsz - chr3R 14851642 intron btsz - chr3R_10_14850001 chr3R_14850001 RAL-737 1777 chr3R 14882527 14882555 chr3R 14882607 14882643 8 86 9.0 10.0 9.5 0.8 116 chr3R 14882527 3` UTR,3` UTR CG3631 +,Rrp6 - chr3R 14882585 3` UTR,3` UTR CG3631 +,Rrp6 - chr3R 14882643 3` UTR Rrp6 - chr3R_8_14880001 chr3R_14880001 RAL-737 1778 chr3R 14954807 14954841 chr3R 14955019 14955053 6 212 6.5 6.0 6.2 0.8 246 chr3R 14954807 intergenic not near genes chr3R 14954930 intergenic not near genes chr3R 14955053 intergenic not near genes chr3R_6_14950001 chr3R_14950001 RAL-737 1779 chr3R 14966346 14966381 chr3R 14966944 14966976 7 594 6.5 7.0 6.8 0.9 630 chr3R 14966346 intergenic not near genes chr3R 14966661 intergenic not near genes chr3R 14966976 intergenic not near genes chr3R_7_14965001 chr3R_14965001 RAL-737 1780 chr3R 15041407 15041419 chr3R 15045190 15045203 Doc 4 3784 0.0 6.0 3.0 1.0 3796 chr3R 15041407 intergenic not near genes chr3R 15043305 intergenic not near genes chr3R 15045203 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-737 1781 chr3R 15052107 15052126 chr3R 15052578 15052598 5 472 6.0 10.0 8.0 0.6 491 chr3R 15052107 intergenic not near genes chr3R 15052352 intergenic not near genes chr3R 15052598 intergenic not near genes chr3R_5_15050001 chr3R_15050001 RAL-737 1782 chr3R 15071187 15071212 chr3R 15071312 15071337 9 125 18.5 17.0 17.8 0.5 150 chr3R 15071187 intron dpr9 - chr3R 15071262 intron dpr9 - chr3R 15071337 intron dpr9 - chr3R_9_15070001 chr3R_15070001 RAL-737 1783 chr3R 15079808 15079829 chr3R 15080049 15080070 pogo 12 241 11.5 11.0 11.2 1.0 262 chr3R 15079808 3` UTR CG6966 - chr3R 15079939 3` UTR CG6966 - chr3R 15080070 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-737 1784 chr3R 15102521 15102527 chr3R 15109776 15109776 412 5 7253 5.0 6.0 5.5 0.8 7255 chr3R 15102521 intron CG42788 - chr3R 15106148 intron CG42788 - chr3R 15109776 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-737 1785 chr3R 15132054 15132069 chr3R 15135114 15135129 Juan 6 3060 9.5 9.5 9.5 0.6 3075 chr3R 15132054 intergenic CG42788 - chr3R 15133592 intergenic not near genes chr3R 15135129 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-737 1786 chr3R 15160566 15160592 chr3R 15160664 15160689 6 97 6.0 12.5 9.2 0.6 123 chr3R 15160566 intron Gyc88E + chr3R 15160628 intron Gyc88E + chr3R 15160689 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-737 1787 chr3R 15162547 15162551 chr3R 15167314 15167318 F-element 6 4767 9.0 2.5 5.8 0.9 4771 chr3R 15162547 intron Gyc88E + chr3R 15164932 intron Gyc88E + chr3R 15167318 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-737 1788 chr3R 15162553 15162558 chr3R 15167312 15167325 F-element 5 4765 7.0 2.5 4.8 0.9 4772 chr3R 15162553 intron Gyc88E + chr3R 15164939 intron Gyc88E + chr3R 15167325 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-737 1789 chr3R 15162569 15162577 chr3R 15167309 15167344 F-element 4 4757 4.0 2.5 3.2 1.0 4775 chr3R 15162569 intron Gyc88E + chr3R 15164956 intron Gyc88E + chr3R 15167344 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-737 1790 chr3R 15184537 15184569 chr3R 15184616 15184650 12 74 2.0 6.5 4.2 2.3 113 chr3R 15184537 intron Gyc88E + chr3R 15184594 intron Gyc88E + chr3R 15184650 intron Gyc88E + chr3R_12_15180001 chr3R_15180001 RAL-737 1791 chr3R 15190648 15190681 chr3R 15190773 15190802 7 124 15.5 14.5 15.0 0.4 154 chr3R 15190648 3` UTR Gyc88E + chr3R 15190725 3` UTR Gyc88E + chr3R 15190802 3` UTR Gyc88E + chr3R_7_15190001 chr3R_15190001 RAL-737 1792 chr3R 15225301 15225326 chr3R 15225381 15225406 4 80 14.0 15.5 14.8 0.3 105 chr3R 15225301 5` UTR CG31344 - chr3R 15225354 intergenic CG31344 -,Caf1 + chr3R 15225406 intergenic CG31344 -,Caf1 + chr3R_4_15225001 chr3R_15225001 RAL-737 1793 chr3R 15320388 15320422 chr3R 15320631 15320655 6 241 10.0 8.0 9.0 0.6 267 chr3R 15320388 5` UTR CG44040 + chr3R 15320522 exon CG44040 + chr3R 15320655 3` UTR CG44040 + chr3R_6_15320001 chr3R_15320001 RAL-737 1794 chr3R 15517597 15517632 chr3R 15517680 15517715 4 78 11.5 7.0 9.2 0.4 118 chr3R 15517597 intergenic not near genes chr3R 15517656 intergenic not near genes chr3R 15517715 intergenic not near genes chr3R_4_15515001 chr3R_15515001 RAL-737 1795 chr3R 15592912 15592918 chr3R 15592991 15593002 4 82 14.0 14.5 14.2 0.3 90 chr3R 15592912 intergenic not near genes chr3R 15592957 intergenic not near genes chr3R 15593002 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-737 1796 chr3R 15594660 15594673 chr3R 15594743 15594756 4 83 0.0 6.0 3.0 1.0 96 chr3R 15594660 intergenic not near genes chr3R 15594708 intergenic not near genes chr3R 15594756 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-737 1797 chr3R 15601166 15601181 chr3R 15608688 15608703 412 8 7521 12.0 7.0 9.5 0.8 7537 chr3R 15601166 intergenic not near genes chr3R 15604934 intergenic not near genes chr3R 15608703 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-737 1798 chr3R 15601183 15601195 chr3R 15608686 15608689 412 11 7511 6.5 6.5 6.5 1.5 7506 chr3R 15601183 intergenic not near genes chr3R 15604936 intergenic not near genes chr3R 15608689 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-737 1799 chr3R 15618733 15618762 chr3R 15626207 15626213 blood 6 7470 1.5 9.5 5.5 0.9 7480 chr3R 15618733 intergenic not near genes chr3R 15622473 intergenic not near genes chr3R 15626213 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-737 1800 chr3R 15642555 15642564 chr3R 15642628 15642642 4 77 10.5 10.0 10.2 0.4 87 chr3R 15642555 intergenic not near genes chr3R 15642598 intergenic not near genes chr3R 15642642 intergenic not near genes chr3R_4_15640001 chr3R_15640001 RAL-737 1801 chr3R 15646790 15646795 chr3R 15646873 15646878 5 83 15.5 21.5 18.5 0.3 88 chr3R 15646790 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646878 intergenic not near genes chr3R_5_15645001 chr3R_15645001 RAL-737 1802 chr3R 15668015 15668038 chr3R 15668104 15668127 7 88 15.0 21.0 18.0 0.4 112 chr3R 15668015 intron,5` UTR pxb +,CR43849 + chr3R 15668071 intron,5` UTR pxb +,CR43849 + chr3R 15668127 intron,5` UTR pxb +,CR43849 + chr3R_7_15665001 chr3R_15665001 RAL-737 1803 chr3R 15691184 15691324 chr3R 15691289 15691411 11 89 0.5 1.0 0.8 6.1 227 chr3R 15691184 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691411 intergenic not near genes chr3R_11_15690001 chr3R_15690001 RAL-737 1804 chr3R 15734191 15734206 chr3R 15734265 15734293 6 82 2.5 4.0 3.2 1.4 102 chr3R 15734191 intergenic not near genes chr3R 15734242 intergenic not near genes chr3R 15734293 intergenic not near genes chr3R_6_15730001 chr3R_15730001 RAL-737 1805 chr3R 15817275 15817280 chr3R 15818255 15818261 4 985 13.0 20.0 16.5 0.2 986 chr3R 15817275 intron alpha-Man-IIb + chr3R 15817768 intron alpha-Man-IIb + chr3R 15818261 intron alpha-Man-IIb + chr3R_4_15815001 chr3R_15815001 RAL-737 1806 chr3R 15885734 15885761 chr3R 15885960 15885964 5 217 14.0 14.5 14.2 0.3 230 chr3R 15885734 intergenic not near genes chr3R 15885849 intergenic not near genes chr3R 15885964 intergenic not near genes chr3R_5_15885001 chr3R_15885001 RAL-737 1807 chr3R 15892661 15892688 chr3R 15892742 15892750 8 78 10.0 13.0 11.5 0.6 89 chr3R 15892661 intron CG14877 - chr3R 15892706 intron CG14877 - chr3R 15892750 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-737 1808 chr3R 16167823 16167830 chr3R 16167918 16167925 4 95 4.0 3.0 3.5 0.9 102 chr3R 16167823 intron CG6006 + chr3R 16167874 intron CG6006 + chr3R 16167925 intron CG6006 + chr3R_4_16165001 chr3R_16165001 RAL-737 1809 chr3R 16189410 16189417 chr3R 16189813 16189820 invader4 4 403 10.0 1.0 5.5 0.6 410 chr3R 16189410 intron sra + chr3R 16189615 intron sra + chr3R 16189820 intron sra + chr3R_4_16185001 chr3R_16185001 RAL-737 1810 chr3R 16189418 16189443 chr3R 16189812 16189846 invader4 9 400 4.0 1.0 2.5 2.6 428 chr3R 16189418 intron sra + chr3R 16189632 intron sra + chr3R 16189846 intron sra + chr3R_9_16185001 chr3R_16185001 RAL-737 1811 chr3R 16225088 16225119 chr3R 16225173 16225204 14 80 2.0 2.0 2.0 4.7 116 chr3R 16225088 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225204 intergenic tara + chr3R_14_16225001 chr3R_16225001 RAL-737 1812 chr3R 16374293 16374327 chr3R 16374410 16374444 11 114 4.0 3.5 3.8 2.3 151 chr3R 16374293 intergenic ss - chr3R 16374368 intergenic ss - chr3R 16374444 3` UTR ss - chr3R_11_16370001 chr3R_16370001 RAL-737 1813 chr3R 16620386 16620398 chr3R 16620526 16620538 8 139 6.5 8.5 7.5 0.9 152 chr3R 16620386 intergenic CG14893 + chr3R 16620462 intergenic CG14893 + chr3R 16620538 intergenic CG14893 + chr3R_8_16620001 chr3R_16620001 RAL-737 1814 chr3R 16731934 16731944 chr3R 16732014 16732022 6 79 3.5 5.0 4.2 1.2 88 chr3R 16731934 intron Ubx - chr3R 16731978 intron Ubx - chr3R 16732022 intron Ubx - chr3R_6_16730001 chr3R_16730001 RAL-737 1815 chr3R 16756321 16756336 chr3R 16762512 16762526 diver 4 6188 4.0 3.5 3.8 0.8 6205 chr3R 16756321 intron bxd - chr3R 16759424 intron bxd - chr3R 16762526 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-737 1816 chr3R 16756341 16756350 chr3R 16762510 16762518 diver 4 6176 3.0 3.5 3.2 1.0 6177 chr3R 16756341 intron bxd - chr3R 16759430 intron bxd - chr3R 16762518 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-737 1817 chr3R 16790128 16790153 chr3R 16790261 16790285 10 135 4.0 8.5 6.2 1.4 157 chr3R 16790128 intergenic Glut3 + chr3R 16790206 intergenic Glut3 + chr3R 16790285 intergenic Glut3 + chr3R_10_16790001 chr3R_16790001 RAL-737 1818 chr3R 16816324 16816343 chr3R 16816496 16816508 5 169 6.5 4.5 5.5 0.8 184 chr3R 16816324 intron abd-A - chr3R 16816416 intron abd-A - chr3R 16816508 intron abd-A - chr3R_5_16815001 chr3R_16815001 RAL-737 1819 chr3R 16820252 16820277 chr3R 16820346 16820371 14 93 5.5 1.0 3.2 3.3 119 chr3R 16820252 intron abd-A - chr3R 16820312 intron abd-A - chr3R 16820371 intron abd-A - chr3R_14_16820001 chr3R_16820001 RAL-737 1820 chr3R 16921831 16921866 chr3R 16921915 16921950 10 81 1.5 4.0 2.8 2.6 119 chr3R 16921831 intron iab-8 - chr3R 16921890 intron iab-8 - chr3R 16921950 intron iab-8 - chr3R_10_16920001 chr3R_16920001 RAL-737 1821 chr3R 17015038 17015070 chr3R 17015156 17015188 14 115 3.0 4.5 3.8 2.9 150 chr3R 17015038 intron Pxd + chr3R 17015113 intron Pxd + chr3R 17015188 intron Pxd + chr3R_14_17015001 chr3R_17015001 RAL-737 1822 chr3R 17027591 17027594 chr3R 17030941 17030968 4 3356 26.0 30.5 28.2 0.1 3377 chr3R 17027591 intron Pxd + chr3R 17029280 exon CG5225 + chr3R 17030968 intergenic CG5225 + chr3R_4_17025001 chr3R_17025001 RAL-737 1823 chr3R 17209699 17209708 chr3R 17209787 17209796 4 88 11.5 9.0 10.2 0.4 97 chr3R 17209699 intergenic not near genes chr3R 17209748 intergenic not near genes chr3R 17209796 intergenic not near genes chr3R_4_17205001 chr3R_17205001 RAL-737 1824 chr3R 17294663 17294692 chr3R 17295091 17295115 BS 9 427 2.0 0.0 1.0 4.5 452 chr3R 17294663 intergenic not near genes chr3R 17294889 intergenic not near genes chr3R 17295115 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-737 1825 chr3R 17346688 17346719 chr3R 17348251 17348282 F-element 17 1562 2.0 7.5 4.8 2.9 1594 chr3R 17346688 intron beat-IIa - chr3R 17347485 intron beat-IIa - chr3R 17348282 intron beat-IIa - chr3R_17_17345001 chr3R_17345001 RAL-737 1826 chr3R 17353460 17353476 chr3R 17353535 17353549 7 75 3.0 5.5 4.2 1.3 89 chr3R 17353460 intron beat-IIa - chr3R 17353504 intron beat-IIa - chr3R 17353549 intron beat-IIa - chr3R_7_17350001 chr3R_17350001 RAL-737 1827 chr3R 17461197 17461231 chr3R 17461279 17461309 14 80 3.0 3.5 3.2 3.3 112 chr3R 17461197 intergenic not near genes chr3R 17461253 intergenic not near genes chr3R 17461309 intergenic not near genes chr3R_14_17460001 chr3R_17460001 RAL-737 1828 chr3R 17634372 17634408 chr3R 17634448 17634478 9 71 2.5 4.0 3.2 2.1 106 chr3R 17634372 intron CG43175 + chr3R 17634425 intron CG43175 + chr3R 17634478 intron CG43175 + chr3R_9_17630001 chr3R_17630001 RAL-737 1829 chr3R 17638315 17638329 chr3R 17638801 17638815 roo 7 486 0.0 0.0 0.0 7.0 500 chr3R 17638315 intron CG43175 + chr3R 17638565 intron CG43175 + chr3R 17638815 intron,intron CG43175 +,CR45222 + chr3R_7_17635001 chr3R_17635001 RAL-737 1830 chr3R 17723270 17723273 chr3R 17723368 17723372 4 98 0.5 6.5 3.5 0.9 102 chr3R 17723270 intergenic Pxt + chr3R 17723321 intergenic Pxt + chr3R 17723372 intergenic Pxt + chr3R_4_17720001 chr3R_17720001 RAL-737 1831 chr3R 17728872 17728903 chr3R 17728964 17728994 5 89 0.5 2.5 1.5 2.0 122 chr3R 17728872 intron Lgr1 + chr3R 17728933 intron Lgr1 + chr3R 17728994 intron Lgr1 + chr3R_5_17725001 chr3R_17725001 RAL-737 1832 chr3R 17823200 17823233 chr3R 17823276 17823310 13 75 8.0 9.5 8.8 1.3 110 chr3R 17823200 intron tinc + chr3R 17823255 intron tinc + chr3R 17823310 intron tinc + chr3R_13_17820001 chr3R_17820001 RAL-737 1833 chr3R 17899101 17899113 chr3R 17899179 17899185 5 77 5.0 5.5 5.2 0.8 84 chr3R 17899101 intron Rim - chr3R 17899143 intron Rim - chr3R 17899185 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-737 1834 chr3R 17925854 17925883 chr3R 17927321 17927350 hobo 11 1463 3.5 4.0 3.8 2.3 1496 chr3R 17925854 intron cpo + chr3R 17926602 intron cpo + chr3R 17927350 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-737 1835 chr3R 17925885 17925887 chr3R 17927319 17927354 hobo 4 1453 3.5 4.0 3.8 0.8 1469 chr3R 17925885 intron cpo + chr3R 17926620 intron cpo + chr3R 17927354 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-737 1836 chr3R 17983211 17983242 chr3R 17983286 17983303 6 73 5.0 1.5 3.2 1.4 92 chr3R 17983211 intron cpo + chr3R 17983257 intron cpo + chr3R 17983303 intron cpo + chr3R_6_17980001 chr3R_17980001 RAL-737 1837 chr3R 18012986 18013000 chr3R 18013061 18013076 4 76 2.5 2.5 2.5 1.1 90 chr3R 18012986 intron cpo + chr3R 18013031 intron cpo + chr3R 18013076 intron cpo + chr3R_4_18010001 chr3R_18010001 RAL-737 1838 chr3R 18025345 18025365 chr3R 18025417 18025436 11 79 1.5 3.0 2.2 3.4 91 chr3R 18025345 3` UTR CG7794 + chr3R 18025390 intergenic CG7794 + chr3R 18025436 intergenic CG7794 + chr3R_11_18025001 chr3R_18025001 RAL-737 1839 chr3R 18078157 18078178 chr3R 18078236 18078256 4 79 6.0 0.0 3.0 1.0 99 chr3R 18078157 intergenic not near genes chr3R 18078206 intergenic not near genes chr3R 18078256 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-737 1840 chr3R 18122898 18122907 chr3R 18122975 18122984 4 77 3.0 4.5 3.8 0.8 86 chr3R 18122898 intron sr + chr3R 18122941 intron sr + chr3R 18122984 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-737 1841 chr3R 18143559 18143589 chr3R 18143648 18143678 6 89 5.5 4.0 4.8 1.0 119 chr3R 18143559 intergenic not near genes chr3R 18143618 intergenic not near genes chr3R 18143678 intergenic not near genes chr3R_6_18140001 chr3R_18140001 RAL-737 1842 chr3R 18352576 18352608 chr3R 18352669 18352701 9 93 3.0 4.0 3.5 2.0 125 chr3R 18352576 intron CG15803 - chr3R 18352638 intron CG15803 - chr3R 18352701 intron CG15803 - chr3R_9_18350001 chr3R_18350001 RAL-737 1843 chr3R 18372401 18372403 chr3R 20220587 20220589 4 1848186 6.5 21.5 14.0 0.3 1848188 chr3R 18372401 intron gl - chr3R 19296495 intergenic not near genes chr3R 20220589 intron Nlg4 + chr3R_4_19295001 chr3R_19295001 RAL-737 1844 chr3R 18379630 18379658 chr3R 18379935 18379964 12 304 6.5 6.0 6.2 1.7 334 chr3R 18379630 intron CG7675 - chr3R 18379797 intron CG7675 - chr3R 18379964 intron CG7675 - chr3R_12_18375001 chr3R_18375001 RAL-737 1845 chr3R 18394471 18394498 chr3R 18394548 18394575 8 74 6.5 3.5 5.0 1.3 104 chr3R 18394471 intron Vha100-2 - chr3R 18394523 intron Vha100-2 - chr3R 18394575 intron Vha100-2 - chr3R_8_18390001 chr3R_18390001 RAL-737 1846 chr3R 18481202 18481210 chr3R 18481286 18481287 4 82 0.0 7.5 3.8 0.8 85 chr3R 18481202 intron fru - chr3R 18481244 intron fru - chr3R 18481287 intron fru - chr3R_4_18480001 chr3R_18480001 RAL-737 1847 chr3R 18501595 18501628 chr3R 18501671 18501689 17 78 4.0 8.5 6.2 2.4 94 chr3R 18501595 intron fru - chr3R 18501642 intron fru - chr3R 18501689 intron fru - chr3R_17_18500001 chr3R_18500001 RAL-737 1848 chr3R 18528367 18528392 chr3R 18528454 18528468 7 83 2.0 3.5 2.8 1.8 101 chr3R 18528367 intron fru - chr3R 18528418 intron fru - chr3R 18528468 intron fru - chr3R_7_18525001 chr3R_18525001 RAL-737 1849 chr3R 18606522 18606532 chr3R 18610734 18610748 F-element 10 4228 3.0 4.5 3.8 2.1 4226 chr3R 18606522 intron,intron qin +,CG14304 - chr3R 18608635 intron,intron qin +,CG14304 - chr3R 18610748 intron,intron qin +,CG14304 - chr3R_10_18605001 chr3R_18605001 RAL-737 1850 chr3R 18617711 18617740 chr3R 18617791 18617820 6 80 3.5 3.0 3.2 1.4 109 chr3R 18617711 intron,intron qin +,CG14304 - chr3R 18617766 intron,intron qin +,CG14304 - chr3R 18617820 intron,intron qin +,CG14304 - chr3R_6_18615001 chr3R_18615001 RAL-737 1851 chr3R 18695764 18695790 chr3R 18695848 18695852 5 80 5.5 0.0 2.8 1.3 88 chr3R 18695764 3` UTR CG34282 + chr3R 18695808 intergenic CG34282 + chr3R 18695852 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-737 1852 chr3R 18766775 18766809 chr3R 18766853 18766887 19 73 5.5 2.5 4.0 3.8 112 chr3R 18766775 intron CG7720 - chr3R 18766831 intron CG7720 - chr3R 18766887 intron CG7720 - chr3R_19_18765001 chr3R_18765001 RAL-737 1853 chr3R 18785868 18785904 chr3R 18785943 18785981 17 72 5.0 6.0 5.5 2.6 113 chr3R 18785868 intron CG7720 - chr3R 18785924 intron CG7720 - chr3R 18785981 intron CG7720 - chr3R_17_18785001 chr3R_18785001 RAL-737 1854 chr3R 18791501 18791520 chr3R 18791580 18791599 4 78 0.5 4.5 2.5 1.1 98 chr3R 18791501 intron CG7720 - chr3R 18791550 intron CG7720 - chr3R 18791599 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-737 1855 chr3R 18812079 18812098 chr3R 18812157 18812171 9 77 5.0 6.5 5.8 1.3 92 chr3R 18812079 intron CG18208 - chr3R 18812125 intron CG18208 - chr3R 18812171 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-737 1856 chr3R 18830061 18830097 chr3R 18830199 18830233 14 138 4.0 4.5 4.2 2.7 172 chr3R 18830061 intron CG18208 - chr3R 18830147 intron CG18208 - chr3R 18830233 intron CG18208 - chr3R_14_18830001 chr3R_18830001 RAL-737 1857 chr3R 18878013 18878035 chr3R 18878140 18878140 7 121 9.5 5.0 7.2 0.9 127 chr3R 18878013 intergenic not near genes chr3R 18878076 intergenic not near genes chr3R 18878140 intergenic not near genes chr3R_7_18875001 chr3R_18875001 RAL-737 1858 chr3R 18891819 18891838 chr3R 18891899 18891921 4 82 8.5 6.5 7.5 0.5 102 chr3R 18891819 intergenic not near genes chr3R 18891870 intergenic not near genes chr3R 18891921 intergenic not near genes chr3R_4_18890001 chr3R_18890001 RAL-737 1859 chr3R 19014095 19014120 chr3R 19014175 19014179 10 77 5.0 7.5 6.2 1.4 84 chr3R 19014095 intron gukh + chr3R 19014137 intron gukh + chr3R 19014179 intron gukh + chr3R_10_19010001 chr3R_19010001 RAL-737 1860 chr3R 19078117 19078131 chr3R 19078209 19078222 7 91 8.0 2.5 5.2 1.1 105 chr3R 19078117 intron cdi - chr3R 19078170 intron cdi - chr3R 19078222 intron cdi - chr3R_7_19075001 chr3R_19075001 RAL-737 1861 chr3R 19106823 19106848 chr3R 19106910 19106914 6 82 10.5 0.0 5.2 1.0 91 chr3R 19106823 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106914 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-737 1862 chr3R 19117063 19117092 chr3R 19117207 19117213 9 137 6.5 0.5 3.5 2.0 150 chr3R 19117063 intron CG6040 + chr3R 19117138 intron CG6040 + chr3R 19117213 intron CG6040 + chr3R_9_19115001 chr3R_19115001 RAL-737 1863 chr3R 19140265 19140298 chr3R 19140712 19140745 5 444 3.0 3.0 3.0 1.2 480 chr3R 19140265 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140745 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-737 1864 chr3R 19198332 19198361 chr3R 19198452 19198483 13 121 6.5 5.0 5.8 1.9 151 chr3R 19198332 intron CG31475 + chr3R 19198408 intron CG31475 + chr3R 19198483 intron CG31475 + chr3R_13_19195001 chr3R_19195001 RAL-737 1865 chr3R 19220972 19221000 chr3R 19221089 19221117 13 115 0.0 5.5 2.8 3.4 145 chr3R 19220972 intron vib - chr3R 19221044 intron vib - chr3R 19221117 intron vib - chr3R_13_19220001 chr3R_19220001 RAL-737 1866 chr3R 19265655 19265679 chr3R 19265737 19265760 8 80 3.0 0.0 1.5 3.2 105 chr3R 19265655 intergenic not near genes chr3R 19265708 intergenic not near genes chr3R 19265760 intergenic not near genes chr3R_8_19265001 chr3R_19265001 RAL-737 1867 chr3R 19340400 19340430 chr3R 19340477 19340507 11 76 3.0 2.5 2.8 2.9 107 chr3R 19340400 intergenic not near genes chr3R 19340454 intergenic not near genes chr3R 19340507 intergenic not near genes chr3R_11_19340001 chr3R_19340001 RAL-737 1868 chr3R 19344665 19344693 chr3R 19344800 19344828 10 135 9.0 2.0 5.5 1.5 163 chr3R 19344665 intergenic not near genes chr3R 19344746 intergenic not near genes chr3R 19344828 intergenic not near genes chr3R_10_19340001 chr3R_19340001 RAL-737 1869 chr3R 19486186 19486210 chr3R 19486352 19486381 8 164 4.5 2.5 3.5 1.8 195 chr3R 19486186 intron Dys + chr3R 19486284 intron Dys + chr3R 19486381 intron Dys + chr3R_8_19485001 chr3R_19485001 RAL-737 1870 chr3R 19602758 19602793 chr3R 19602834 19602871 15 77 3.0 1.5 2.2 4.7 113 chr3R 19602758 intergenic CG7333 + chr3R 19602814 intergenic CG7333 + chr3R 19602871 intergenic CG7333 + chr3R_15_19600001 chr3R_19600001 RAL-737 1871 chr3R 19783184 19783212 chr3R 19783272 19783275 7 84 2.5 4.0 3.2 1.7 91 chr3R 19783184 intergenic CG11407 +,CG11453 + chr3R 19783230 intergenic CG11407 +,CG11453 + chr3R 19783275 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-737 1872 chr3R 19793892 19793927 chr3R 19793985 19794020 13 92 2.5 5.5 4.0 2.6 128 chr3R 19793892 intergenic bnl - chr3R 19793956 intergenic bnl - chr3R 19794020 intergenic bnl - chr3R_13_19790001 chr3R_19790001 RAL-737 1873 chr3R 19839536 19839561 chr3R 19839764 19839788 12 229 5.0 6.5 5.8 1.8 252 chr3R 19839536 intergenic not near genes chr3R 19839662 intergenic not near genes chr3R 19839788 intergenic not near genes chr3R_12_19835001 chr3R_19835001 RAL-737 1874 chr3R 19846960 19846995 chr3R 19847119 19847137 6 156 1.0 2.0 1.5 2.4 177 chr3R 19846960 intergenic CG4662 + chr3R 19847048 intergenic CG4662 + chr3R 19847137 intergenic CG4662 + chr3R_6_19845001 chr3R_19845001 RAL-737 1875 chr3R 19908279 19908300 chr3R 19908363 19908384 5 83 0.0 3.0 1.5 2.0 105 chr3R 19908279 intron RhoGAP92B + chr3R 19908332 intron RhoGAP92B + chr3R 19908384 intron RhoGAP92B + chr3R_5_19905001 chr3R_19905001 RAL-737 1876 chr3R 19914012 19914044 chr3R 19914104 19914137 18 93 4.0 8.0 6.0 2.6 125 chr3R 19914012 3` UTR RhoGAP92B + chr3R 19914074 3` UTR RhoGAP92B + chr3R 19914137 3` UTR RhoGAP92B + chr3R_18_19910001 chr3R_19910001 RAL-737 1877 chr3R 19943879 19943909 chr3R 19943959 19943978 7 78 7.0 0.0 3.5 1.6 99 chr3R 19943879 intron Hs6st - chr3R 19943928 intron Hs6st - chr3R 19943978 intron Hs6st - chr3R_7_19940001 chr3R_19940001 RAL-737 1878 chr3R 20041112 20041148 chr3R 20041214 20041249 8 99 4.0 6.5 5.2 1.3 137 chr3R 20041112 intron CG17193 - chr3R 20041180 intron CG17193 - chr3R 20041249 intron CG17193 - chr3R_8_20040001 chr3R_20040001 RAL-737 1879 chr3R 20109539 20109571 chr3R 20114745 20114777 copia 14 5205 3.0 2.5 2.8 3.7 5238 chr3R 20109539 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_14_20110001 chr3R_20110001 RAL-737 1880 chr3R 20132543 20132544 chr3R 20132943 20132968 4 413 1.5 3.0 2.2 1.2 425 chr3R 20132543 intergenic not near genes chr3R 20132756 intergenic not near genes chr3R 20132968 intergenic not near genes chr3R_4_20130001 chr3R_20130001 RAL-737 1881 chr3R 20146314 20146347 chr3R 20146635 20146668 9 315 2.5 2.0 2.2 2.8 354 chr3R 20146314 intergenic not near genes chr3R 20146491 intergenic not near genes chr3R 20146668 intergenic not near genes chr3R_9_20145001 chr3R_20145001 RAL-737 1882 chr3R 20156695 20156721 chr3R 20165859 20165891 roo 12 9165 5.0 11.0 8.0 1.3 9196 chr3R 20156695 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165891 intergenic not near genes chr3R_12_20160001 chr3R_20160001 RAL-737 1883 chr3R 20205562 20205595 chr3R 20205681 20205717 12 120 3.5 4.5 4.0 2.4 155 chr3R 20205562 intron Nlg4 + chr3R 20205640 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_12_20205001 chr3R_20205001 RAL-737 1884 chr3R 20209800 20209834 chr3R 20209886 20209919 15 84 3.5 6.0 4.8 2.6 119 chr3R 20209800 intron Nlg4 + chr3R 20209860 intron Nlg4 + chr3R 20209919 intron Nlg4 + chr3R_15_20205001 chr3R_20205001 RAL-737 1885 chr3R 20245285 20245305 chr3R 20248888 20248915 F-element 12 3609 3.0 3.0 3.0 3.0 3630 chr3R 20245285 3` UTR Nlg4 + chr3R 20247100 intergenic not near genes chr3R 20248915 intergenic not near genes chr3R_12_20245001 chr3R_20245001 RAL-737 1886 chr3R 20266515 20266548 chr3R 20272986 20273019 Burdock 19 6469 1.5 3.0 2.2 5.9 6504 chr3R 20266515 intron cic + chr3R 20269767 intron cic + chr3R 20273019 intron cic + chr3R_19_20265001 chr3R_20265001 RAL-737 1887 chr3R 20282276 20282279 chr3R 20282352 20282355 4 76 0.5 6.0 3.2 1.0 79 chr3R 20282276 intron cic + chr3R 20282316 intron cic + chr3R 20282355 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-737 1888 chr3R 20282288 20282306 chr3R 20282364 20282382 6 76 0.5 7.5 4.0 1.2 94 chr3R 20282288 intron cic + chr3R 20282335 intron cic + chr3R 20282382 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-737 1889 chr3R 20286154 20286184 chr3R 20286260 20286291 16 104 3.0 1.0 2.0 5.3 137 chr3R 20286154 intron cic + chr3R 20286222 intron cic + chr3R 20286291 intron cic + chr3R_16_20285001 chr3R_20285001 RAL-737 1890 chr3R 20308187 20308219 chr3R 20308275 20308276 6 82 4.0 0.0 2.0 2.0 89 chr3R 20308187 intergenic not near genes chr3R 20308232 intergenic not near genes chr3R 20308276 intergenic not near genes chr3R_6_20305001 chr3R_20305001 RAL-737 1891 chr3R 20312854 20312885 chr3R 20312940 20312971 9 85 4.0 4.0 4.0 1.8 117 chr3R 20312854 intron CG42668 + chr3R 20312912 intron CG42668 + chr3R 20312971 intron CG42668 + chr3R_9_20310001 chr3R_20310001 RAL-737 1892 chr3R 20330997 20331032 chr3R 20331483 20331518 roo 19 486 3.5 4.5 4.0 3.8 521 chr3R 20330997 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331518 intergenic not near genes chr3R_19_20330001 chr3R_20330001 RAL-737 1893 chr3R 20594481 20594504 chr3R 20594571 20594575 6 87 7.0 0.5 3.8 1.2 94 chr3R 20594481 intron bon + chr3R 20594528 intron bon + chr3R 20594575 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-737 1894 chr3R 20596192 20596213 chr3R 20596279 20596299 10 86 6.0 5.5 5.8 1.5 107 chr3R 20596192 intron bon + chr3R 20596246 intron bon + chr3R 20596299 intron bon + chr3R_10_20595001 chr3R_20595001 RAL-737 1895 chr3R 20684212 20684242 chr3R 20684296 20684325 14 82 6.5 7.0 6.8 1.8 113 chr3R 20684212 intergenic not near genes chr3R 20684268 intergenic not near genes chr3R 20684325 intergenic not near genes chr3R_14_20680001 chr3R_20680001 RAL-737 1896 chr3R 20707752 20707764 chr3R 20707967 20707979 6 214 5.0 4.5 4.8 1.0 227 chr3R 20707752 intron Oamb - chr3R 20707866 intron Oamb - chr3R 20707979 intron Oamb - chr3R_6_20705001 chr3R_20705001 RAL-737 1897 chr3R 20735008 20735043 chr3R 20735093 20735099 4 73 3.5 3.5 3.5 0.9 91 chr3R 20735008 intergenic not near genes chr3R 20735054 intergenic not near genes chr3R 20735099 intergenic not near genes chr3R_4_20735001 chr3R_20735001 RAL-737 1898 chr3R 20739579 20739609 chr3R 20739697 20739727 16 118 2.5 7.0 4.8 2.8 148 chr3R 20739579 intergenic CG17267 - chr3R 20739653 intergenic CG42322 + chr3R 20739727 intergenic CG42322 + chr3R_16_20735001 chr3R_20735001 RAL-737 1899 chr3R 20787438 20787453 chr3R 20787528 20787543 6 90 6.5 6.5 6.5 0.8 105 chr3R 20787438 intron Syp + chr3R 20787490 intron Syp + chr3R 20787543 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-737 1900 chr3R 20854497 20854520 chr3R 20859271 20859288 Doc 6 4777 8.0 2.0 5.0 1.0 4791 chr3R 20854497 intron Ir93a - chr3R 20856892 intron Ir93a - chr3R 20859288 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-737 1901 chr3R 20870249 20870284 chr3R 20870334 20870354 12 78 4.0 5.0 4.5 2.2 105 chr3R 20870249 intergenic not near genes chr3R 20870302 intergenic not near genes chr3R 20870354 intergenic not near genes chr3R_12_20870001 chr3R_20870001 RAL-737 1902 chr3R 20878392 20878402 chr3R 20878478 20878488 6 86 5.0 0.0 2.5 1.7 96 chr3R 20878392 intergenic CR44048 -,TotZ + chr3R 20878440 3` UTR CR44048 - chr3R 20878488 3` UTR CR44048 - chr3R_6_20875001 chr3R_20875001 RAL-737 1903 chr3R 20958390 20958415 chr3R 20958489 20958516 9 100 10.0 4.5 7.2 1.1 126 chr3R 20958390 intron Atpalpha + chr3R 20958453 intron Atpalpha + chr3R 20958516 intron Atpalpha + chr3R_9_20955001 chr3R_20955001 RAL-737 1904 chr3R 20966130 20966156 chr3R 20966213 20966239 11 82 1.5 7.0 4.2 2.1 109 chr3R 20966130 intron Atpalpha + chr3R 20966184 intron Atpalpha + chr3R 20966239 intron Atpalpha + chr3R_11_20965001 chr3R_20965001 RAL-737 1905 chr3R 21014015 21014044 chr3R 21014093 21014117 13 77 4.0 10.0 7.0 1.6 102 chr3R 21014015 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014117 3` UTR Calx + chr3R_13_21010001 chr3R_21010001 RAL-737 1906 chr3R 21020398 21020433 chr3R 21020474 21020509 8 76 1.5 1.5 1.5 3.2 111 chr3R 21020398 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020509 3` UTR Rlip + chr3R_8_21020001 chr3R_21020001 RAL-737 1907 chr3R 21048385 21048404 chr3R 21051427 21051447 6 3042 30.5 22.0 26.2 0.2 3062 chr3R 21048385 exon CG7079 - chr3R 21049916 intergenic CG17279 - chr3R 21051447 3` UTR Mvl - chr3R_6_21045001 chr3R_21045001 RAL-737 1908 chr3R 21129823 21130017 chr3R 21129912 21130094 16 82 1.0 0.0 0.5 10.7 271 chr3R 21129823 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129958 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130094 intergenic Ice2 +,Obp93a -,CG5793 + chr3R_16_21125001 chr3R_21125001 RAL-737 1909 chr3R 21141672 21141707 chr3R 21150153 21150180 Tirant 7 8470 4.0 6.0 5.0 1.2 8508 chr3R 21141672 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150180 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-737 1910 chr3R 21154549 21154583 chr3R 21154754 21154798 6 205 5.0 0.0 2.5 1.7 249 chr3R 21154549 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-737 1911 chr3R 21240457 21240479 chr3R 21240536 21240571 12 88 3.5 3.5 3.5 2.7 114 chr3R 21240457 intergenic not near genes chr3R 21240514 intergenic not near genes chr3R 21240571 intergenic not near genes chr3R_12_21240001 chr3R_21240001 RAL-737 1912 chr3R 21343829 21343843 chr3R 21343922 21343931 6 92 7.5 6.5 7.0 0.8 102 chr3R 21343829 intron CG16791 - chr3R 21343880 intron CG16791 - chr3R 21343931 intron CG16791 - chr3R_6_21340001 chr3R_21340001 RAL-737 1913 chr3R 21385957 21385961 chr3R 21386010 21386038 4 70 4.5 2.5 3.5 0.9 81 chr3R 21385957 intergenic not near genes chr3R 21385998 intergenic not near genes chr3R 21386038 intergenic not near genes chr3R_4_21385001 chr3R_21385001 RAL-737 1914 chr3R 21388906 21388935 chr3R 21389000 21389008 6 86 2.5 0.5 1.5 2.4 102 chr3R 21388906 5` UTR bap + chr3R 21388957 5` UTR bap + chr3R 21389008 5` UTR bap + chr3R_6_21385001 chr3R_21385001 RAL-737 1915 chr3R 21472014 21472036 chr3R 21472095 21472095 10 76 1.5 8.0 4.8 1.7 81 chr3R 21472014 intergenic not near genes chr3R 21472054 intergenic not near genes chr3R 21472095 intergenic not near genes chr3R_10_21470001 chr3R_21470001 RAL-737 1916 chr3R 21481387 21481418 chr3R 21481477 21481478 5 83 3.5 0.0 1.8 1.8 91 chr3R 21481387 intergenic not near genes chr3R 21481432 intergenic not near genes chr3R 21481478 intergenic not near genes chr3R_5_21480001 chr3R_21480001 RAL-737 1917 chr3R 21518256 21518269 chr3R 21518340 21518353 6 84 0.0 3.5 1.8 2.1 97 chr3R 21518256 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_6_21515001 chr3R_21515001 RAL-737 1918 chr3R 21519988 21520136 chr3R 21520088 21520230 13 100 4.5 4.0 4.2 2.5 242 chr3R 21519988 intergenic not near genes chr3R 21520109 intergenic not near genes chr3R 21520230 intergenic not near genes chr3R_13_21520001 chr3R_21520001 RAL-737 1919 chr3R 21624104 21624120 chr3R 21624198 21624214 7 94 3.5 4.0 3.8 1.5 110 chr3R 21624104 intron E2f - chr3R 21624159 intron E2f - chr3R 21624214 intron E2f - chr3R_7_21620001 chr3R_21620001 RAL-737 1920 chr3R 21651248 21651269 chr3R 21651326 21651347 5 78 3.0 1.5 2.2 1.6 99 chr3R 21651248 intron E2f - chr3R 21651298 intron E2f - chr3R 21651347 intron E2f - chr3R_5_21650001 chr3R_21650001 RAL-737 1921 chr3R 21761139 21761149 chr3R 21768509 21768537 mdg1 4 7378 5.5 3.5 4.5 0.7 7398 chr3R 21761139 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768537 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-737 1922 chr3R 21784858 21784890 chr3R 21784955 21784980 10 97 5.5 1.0 3.2 2.4 122 chr3R 21784858 3` UTR,3` UTR CASK -,CRG - chr3R 21784919 3` UTR,3` UTR CASK -,CRG - chr3R 21784980 3` UTR,3` UTR CASK -,CRG - chr3R_10_21780001 chr3R_21780001 RAL-737 1923 chr3R 8339246 8339247 chr3R 21907534 21907534 4 13568288 23.0 27.5 25.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-737 1924 chr3R 21907534 21907534 chr3R 28831801 28831802 19 6924268 31.0 19.5 25.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-737 1925 chr3R 21907535 21907535 chr3R 28831801 28831802 22 6924266 32.5 19.5 26.0 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-737 1926 chr3R 21907536 21907536 chr3R 28831801 28831802 19 6924266 32.0 19.5 25.8 0.7 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-737 1927 chr3R 21985230 21985243 chr3R 21985335 21985348 6 103 11.0 5.5 8.2 0.7 118 chr3R 21985230 intron Eip93F + chr3R 21985289 intron Eip93F + chr3R 21985348 intron Eip93F + chr3R_6_21985001 chr3R_21985001 RAL-737 1928 chr3R 21985245 21985261 chr3R 21985332 21985362 7 96 5.0 5.0 5.0 1.2 117 chr3R 21985245 intron Eip93F + chr3R 21985304 intron Eip93F + chr3R 21985362 intron Eip93F + chr3R_7_21985001 chr3R_21985001 RAL-737 1929 chr3R 22161945 22161975 chr3R 22163006 22163036 7 1054 3.0 3.0 3.0 1.8 1091 chr3R 22161945 intron SKIP + chr3R 22162490 intron SKIP + chr3R 22163036 intron SKIP + chr3R_7_22160001 chr3R_22160001 RAL-737 1930 chr3R 22200909 22200938 chr3R 22200991 22201019 11 83 3.5 2.5 3.0 2.8 110 chr3R 22200909 intron,intron SKIP +,CR45224 - chr3R 22200964 intron,intron SKIP +,CR45224 - chr3R 22201019 intron,intron SKIP +,CR45224 - chr3R_11_22200001 chr3R_22200001 RAL-737 1931 chr3R 22234089 22234093 chr3R 22234166 22234170 4 76 3.0 15.0 9.0 0.4 81 chr3R 22234089 intron SKIP + chr3R 22234130 intron SKIP + chr3R 22234170 intron SKIP + chr3R_4_22230001 chr3R_22230001 RAL-737 1932 chr3R 22234701 22234714 chr3R 22236010 22236033 pogo 9 1314 4.0 2.0 3.0 2.2 1332 chr3R 22234701 intron SKIP + chr3R 22235367 intron SKIP + chr3R 22236033 intron SKIP + chr3R_9_22235001 chr3R_22235001 RAL-737 1933 chr3R 22286148 22286162 chr3R 22286225 22286232 4 72 3.5 1.5 2.5 1.1 84 chr3R 22286148 intron SKIP + chr3R 22286190 intron SKIP + chr3R 22286232 intron SKIP + chr3R_4_22285001 chr3R_22285001 RAL-737 1934 chr3R 22347882 22347905 chr3R 22347958 22347983 5 77 3.0 2.0 2.5 1.4 101 chr3R 22347882 intergenic not near genes chr3R 22347932 intergenic not near genes chr3R 22347983 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-737 1935 chr3R 22450552 22450579 chr3R 22453192 22453219 NOF 7 2634 4.5 7.0 5.8 1.0 2667 chr3R 22450552 intron CG34376 + chr3R 22451886 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-737 1936 chr3R 22495214 22495232 chr3R 22495332 22495343 4 117 12.0 10.5 11.2 0.3 129 chr3R 22495214 intergenic not near genes chr3R 22495278 intergenic not near genes chr3R 22495343 intergenic not near genes chr3R_4_22495001 chr3R_22495001 RAL-737 1937 chr3R 22495235 22495244 chr3R 22495330 22495358 8 108 8.0 9.0 8.5 0.8 123 chr3R 22495235 intergenic not near genes chr3R 22495296 intergenic not near genes chr3R 22495358 intergenic not near genes chr3R_8_22495001 chr3R_22495001 RAL-737 1938 chr3R 22580644 22580673 chr3R 22580727 22580733 5 73 3.0 5.5 4.2 1.0 89 chr3R 22580644 intergenic CSN6 +,CG33110 + chr3R 22580688 intergenic CSN6 +,CG33110 + chr3R 22580733 intergenic CSN6 +,CG33110 + chr3R_5_22580001 chr3R_22580001 RAL-737 1939 chr3R 22597376 22597394 chr3R 22597453 22597468 5 74 4.5 0.5 2.5 1.4 92 chr3R 22597376 intron Efa6 + chr3R 22597422 intron Efa6 + chr3R 22597468 intron Efa6 + chr3R_5_22595001 chr3R_22595001 RAL-737 1940 chr3R 22640374 22640385 chr3R 22640456 22640467 5 82 1.5 2.0 1.8 1.8 93 chr3R 22640374 intron wake + chr3R 22640420 intron wake + chr3R 22640467 intron wake + chr3R_5_22640001 chr3R_22640001 RAL-737 1941 chr3R 22640389 22640400 chr3R 22640453 22640475 6 74 0.5 0.5 0.5 4.0 86 chr3R 22640389 intron wake + chr3R 22640432 intron wake + chr3R 22640475 intron wake + chr3R_6_22640001 chr3R_22640001 RAL-737 1942 chr3R 22675186 22675204 chr3R 22675292 22675309 7 106 3.5 4.0 3.8 1.5 123 chr3R 22675186 intron wake + chr3R 22675248 intron wake + chr3R 22675309 intron wake + chr3R_7_22675001 chr3R_22675001 RAL-737 1943 chr3R 22675207 22675211 chr3R 22675289 22675317 5 101 2.0 3.0 2.5 1.4 110 chr3R 22675207 intron wake + chr3R 22675262 intron wake + chr3R 22675317 intron wake + chr3R_5_22675001 chr3R_22675001 RAL-737 1944 chr3R 22684204 22684237 chr3R 22684280 22684310 11 72 7.0 3.5 5.2 1.8 106 chr3R 22684204 intergenic not near genes chr3R 22684257 intergenic not near genes chr3R 22684310 intergenic not near genes chr3R_11_22680001 chr3R_22680001 RAL-737 1945 chr3R 22779487 22779508 chr3R 22779560 22779574 7 73 2.5 9.5 6.0 1.0 87 chr3R 22779487 intron,3` UTR CG7029 +,CR43654 - chr3R 22779530 intron,3` UTR CG7029 +,CR43654 - chr3R 22779574 intron,3` UTR CG7029 +,CR43654 - chr3R_7_22775001 chr3R_22775001 RAL-737 1946 chr3R 22794528 22794542 chr3R 22794604 22794618 6 74 6.5 7.0 6.8 0.8 90 chr3R 22794528 intergenic CG7029 + chr3R 22794573 intergenic not near genes chr3R 22794618 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-737 1947 chr3R 22797762 22797937 chr3R 22797843 22798011 22 87 0.5 0.0 0.2 18.3 249 chr3R 22797762 intergenic not near genes chr3R 22797886 intergenic not near genes chr3R 22798011 intergenic not near genes chr3R_22_22795001 chr3R_22795001 RAL-737 1948 chr3R 22827443 22827448 chr3R 22827499 22827524 4 65 4.5 4.0 4.2 0.8 81 chr3R 22827443 intergenic CR44350 - chr3R 22827484 intergenic CR44350 - chr3R 22827524 intergenic CR44350 - chr3R_4_22825001 chr3R_22825001 RAL-737 1949 chr3R 22840816 22840850 chr3R 22841278 22841312 12 459 5.0 7.0 6.0 1.7 496 chr3R 22840816 intergenic not near genes chr3R 22841064 intergenic not near genes chr3R 22841312 intergenic not near genes chr3R_12_22840001 chr3R_22840001 RAL-737 1950 chr3R 22880937 22880960 chr3R 22881075 22881098 12 138 1.5 6.0 3.8 2.5 161 chr3R 22880937 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881098 intergenic not near genes chr3R_12_22880001 chr3R_22880001 RAL-737 1951 chr3R 22881204 22881219 chr3R 22884910 22884913 Doc 6 3704 2.5 0.0 1.2 2.7 3709 chr3R 22881204 intergenic not near genes chr3R 22883058 intergenic not near genes chr3R 22884913 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-737 1952 chr3R 22900074 22900090 chr3R 22900392 22900409 7 319 0.0 2.5 1.2 3.2 335 chr3R 22900074 intron klg + chr3R 22900242 intron klg + chr3R 22900409 intron klg + chr3R_7_22900001 chr3R_22900001 RAL-737 1953 chr3R 22953827 22953861 chr3R 22954479 22954513 13 649 7.0 0.5 3.8 2.7 686 chr3R 22953827 intron klg + chr3R 22954170 intron klg + chr3R 22954513 intron klg + chr3R_13_22950001 chr3R_22950001 RAL-737 1954 chr3R 23070658 23070663 chr3R 23070738 23070743 4 80 4.5 0.0 2.2 1.2 85 chr3R 23070658 3` UTR CG13830 - chr3R 23070700 3` UTR CG13830 - chr3R 23070743 3` UTR CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-737 1955 chr3R 23073655 23073689 chr3R 23073744 23073757 7 86 2.5 3.0 2.8 1.8 102 chr3R 23073655 intron CG13830 - chr3R 23073706 intron CG13830 - chr3R 23073757 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-737 1956 chr3R 23101391 23101410 chr3R 23101472 23101484 5 85 3.0 2.5 2.8 1.3 93 chr3R 23101391 intron CG13830 - chr3R 23101438 intron CG13830 - chr3R 23101484 intron CG13830 - chr3R_5_23100001 chr3R_23100001 RAL-737 1957 chr3R 23161913 23161940 chr3R 23162010 23162037 14 97 2.5 6.0 4.2 2.7 124 chr3R 23161913 intergenic not near genes chr3R 23161975 intergenic not near genes chr3R 23162037 intergenic not near genes chr3R_14_23160001 chr3R_23160001 RAL-737 1958 chr3R 23260953 23260990 chr3R 23261035 23261066 12 72 3.5 1.5 2.5 3.4 113 chr3R 23260953 3` UTR orb - chr3R 23261010 3` UTR orb - chr3R 23261066 3` UTR orb - chr3R_12_23260001 chr3R_23260001 RAL-737 1959 chr3R 23385587 23385618 chr3R 23385709 23385739 5 122 4.0 3.5 3.8 1.0 152 chr3R 23385587 intergenic not near genes chr3R 23385663 intergenic not near genes chr3R 23385739 intergenic not near genes chr3R_5_23385001 chr3R_23385001 RAL-737 1960 chr3R 23528263 23528284 chr3R 23528350 23528356 6 85 2.0 3.5 2.8 1.6 93 chr3R 23528263 intron CG10175 - chr3R 23528310 intron CG10175 - chr3R 23528356 intron CG10175 - chr3R_6_23525001 chr3R_23525001 RAL-737 1961 chr3R 23536948 23536982 chr3R 23537130 23537145 5 178 3.5 5.0 4.2 1.0 197 chr3R 23536948 intergenic CG10168 -,CG16732 - chr3R 23537046 exon CG10168 - chr3R 23537145 exon CG10168 - chr3R_5_23535001 chr3R_23535001 RAL-737 1962 chr3R 23548076 23548098 chr3R 23548373 23548384 4 298 3.5 3.5 3.5 0.9 308 chr3R 23548076 intergenic not near genes chr3R 23548230 intergenic not near genes chr3R 23548384 intergenic not near genes chr3R_4_23545001 chr3R_23545001 RAL-737 1963 chr3R 23558399 23558420 chr3R 23560180 23560201 Bari1 12 1780 8.0 2.0 5.0 2.0 1802 chr3R 23558399 intron beat-IV + chr3R 23559300 intron beat-IV + chr3R 23560201 intron beat-IV + chr3R_12_23555001 chr3R_23555001 RAL-737 1964 chr3R 23565862 23565868 chr3R 23565949 23565955 4 87 2.5 0.0 1.2 1.8 93 chr3R 23565862 intron beat-IV + chr3R 23565908 intron beat-IV + chr3R 23565955 intron beat-IV + chr3R_4_23565001 chr3R_23565001 RAL-737 1965 chr3R 23598876 23598886 chr3R 23598948 23598964 7 75 0.0 14.0 7.0 0.9 88 chr3R 23598876 exon CG10183 - chr3R 23598920 exon CG10183 - chr3R 23598964 exon CG10183 - chr3R_7_23595001 chr3R_23595001 RAL-737 1966 chr3R 23627550 23627642 chr3R 23627627 23627701 8 68 0.5 0.5 0.5 5.3 151 chr3R 23627550 intron CG31145 - chr3R 23627626 intron CG31145 - chr3R 23627701 intron CG31145 - chr3R_8_23625001 chr3R_23625001 RAL-737 1967 chr3R 23725456 23725486 chr3R 23725537 23725567 11 81 1.0 3.0 2.0 3.7 111 chr3R 23725456 intron CG10365 + chr3R 23725512 intron CG10365 + chr3R 23725567 intron CG10365 + chr3R_11_23725001 chr3R_23725001 RAL-737 1968 chr3R 23783253 23783279 chr3R 23783339 23783343 5 82 8.0 1.5 4.8 0.9 90 chr3R 23783253 intron mbc + chr3R 23783298 intron mbc + chr3R 23783343 intron mbc + chr3R_5_23780001 chr3R_23780001 RAL-737 1969 chr3R 23783638 23783665 chr3R 23783714 23783741 10 74 4.5 3.5 4.0 2.0 103 chr3R 23783638 intron mbc + chr3R 23783690 intron mbc + chr3R 23783741 intron mbc + chr3R_10_23780001 chr3R_23780001 RAL-737 1970 chr3R 23820637 23820669 chr3R 23820721 23820753 7 83 3.0 5.5 4.2 1.3 116 chr3R 23820637 5` UTR CG34355 + chr3R 23820695 5` UTR CG34355 + chr3R 23820753 5` UTR CG34355 + chr3R_7_23820001 chr3R_23820001 RAL-737 1971 chr3R 23831237 23831262 chr3R 23831444 23831453 5 204 3.5 3.0 3.2 1.2 216 chr3R 23831237 intron CG34355 + chr3R 23831345 intron CG34355 + chr3R 23831453 intron CG34355 + chr3R_5_23830001 chr3R_23830001 RAL-737 1972 chr3R 23835403 23835434 chr3R 23844553 23844584 roo 13 9150 4.5 5.5 5.0 2.2 9181 chr3R 23835403 intron CG34355 + chr3R 23839994 intron CG34355 + chr3R 23844584 intron CG34355 + chr3R_13_23835001 chr3R_23835001 RAL-737 1973 chr3R 23868214 23868238 chr3R 23868292 23868304 10 74 9.0 2.0 5.5 1.5 90 chr3R 23868214 intron Pli - chr3R 23868259 intron Pli - chr3R 23868304 intron Pli - chr3R_10_23865001 chr3R_23865001 RAL-737 1974 chr3R 23944911 23944932 chr3R 23944996 23945008 8 82 5.5 4.5 5.0 1.3 97 chr3R 23944911 intron CG12268 - chr3R 23944960 intron CG12268 - chr3R 23945008 intron CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-737 1975 chr3R 23949043 23949070 chr3R 23949120 23949147 11 76 2.5 7.0 4.8 1.9 104 chr3R 23949043 intergenic not near genes chr3R 23949095 intergenic not near genes chr3R 23949147 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-737 1976 chr3R 24011668 24011680 chr3R 24011751 24011763 6 81 0.0 8.0 4.0 1.2 95 chr3R 24011668 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011763 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-737 1977 chr3R 24021629 24021648 chr3R 24021719 24021738 4 90 5.5 4.0 4.8 0.7 109 chr3R 24021629 intron KrT95D - chr3R 24021684 intron KrT95D - chr3R 24021738 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-737 1978 chr3R 24072084 24072122 chr3R 24072522 24072528 jockey 8 432 3.5 7.0 5.2 1.3 444 chr3R 24072084 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072528 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-737 1979 chr3R 24076918 24076939 chr3R 24078385 24078396 hobo 6 1465 9.0 4.0 6.5 0.8 1478 chr3R 24076918 intron 4EHP - chr3R 24077657 intron 4EHP - chr3R 24078396 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-737 1980 chr3R 24116671 24116698 chr3R 24116752 24116778 10 78 4.0 1.5 2.8 2.6 107 chr3R 24116671 intron Rootletin + chr3R 24116724 intron Rootletin + chr3R 24116778 intron Rootletin + chr3R_10_24115001 chr3R_24115001 RAL-737 1981 chr3R 24199738 24199773 chr3R 24199818 24199853 13 80 1.0 3.0 2.0 4.3 115 chr3R 24199738 intron twin - chr3R 24199796 intron twin - chr3R 24199853 intron twin - chr3R_13_24195001 chr3R_24195001 RAL-737 1982 chr3R 24207218 24207246 chr3R 24212294 24212322 flea 7 5076 6.0 7.0 6.5 0.9 5104 chr3R 24207218 intron twin - chr3R 24209770 intron twin - chr3R 24212322 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-737 1983 chr3R 24431602 24431627 chr3R 24431681 24431698 14 77 6.5 3.5 5.0 2.3 96 chr3R 24431602 intron nAChRalpha1 - chr3R 24431650 intron nAChRalpha1 - chr3R 24431698 intron nAChRalpha1 - chr3R_14_24430001 chr3R_24430001 RAL-737 1984 chr3R 24434240 24434271 chr3R 24434318 24434349 13 75 5.5 3.5 4.5 2.4 109 chr3R 24434240 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434349 intron nAChRalpha1 - chr3R_13_24430001 chr3R_24430001 RAL-737 1985 chr3R 24493063 24493085 chr3R 24493149 24493166 10 85 6.0 5.0 5.5 1.5 103 chr3R 24493063 intergenic not near genes chr3R 24493114 intergenic not near genes chr3R 24493166 intergenic not near genes chr3R_10_24490001 chr3R_24490001 RAL-737 1986 chr3R 24493294 24493309 chr3R 24493502 24493539 BS 6 226 10.5 5.5 8.0 0.7 245 chr3R 24493294 intergenic not near genes chr3R 24493416 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-737 1987 chr3R 24527815 24527834 chr3R 24527892 24527925 6 88 3.5 5.0 4.2 1.2 110 chr3R 24527815 intergenic CG6607 +,CG13618 + chr3R 24527870 intergenic CG6607 +,CG13618 + chr3R 24527925 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 RAL-737 1988 chr3R 24667613 24667631 chr3R 24667690 24667708 5 76 2.5 0.5 1.5 2.0 95 chr3R 24667613 intron slo + chr3R 24667660 intron slo + chr3R 24667708 intron slo + chr3R_5_24665001 chr3R_24665001 RAL-737 1989 chr3R 24670055 24670198 chr3R 24670165 24670283 22 101 0.0 0.0 0.0 22.0 228 chr3R 24670055 intron slo + chr3R 24670169 intron slo + chr3R 24670283 intron slo + chr3R_22_24670001 chr3R_24670001 RAL-737 1990 chr3R 24714686 24714695 chr3R 24714762 24714771 4 76 16.0 0.5 8.2 0.4 85 chr3R 24714686 intron CG13627 + chr3R 24714728 intron CG13627 + chr3R 24714771 intron CG13627 + chr3R_4_24710001 chr3R_24710001 RAL-737 1991 chr3R 24730093 24730125 chr3R 24732466 24732483 Doc 8 2369 3.0 0.5 1.8 2.9 2390 chr3R 24730093 intron tok + chr3R 24731288 intron tok + chr3R 24732483 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-737 1992 chr3R 24777250 24777282 chr3R 24777338 24777369 4 86 0.0 5.5 2.8 1.1 119 chr3R 24777250 intron CG42331 + chr3R 24777310 intron CG42331 + chr3R 24777369 intron CG42331 + chr3R_4_24775001 chr3R_24775001 RAL-737 1993 chr3R 24893466 24893487 chr3R 24893546 24893567 6 80 4.0 3.5 3.8 1.2 101 chr3R 24893466 intron CG31121 - chr3R 24893516 intron CG31121 - chr3R 24893567 intron CG31121 - chr3R_6_24890001 chr3R_24890001 RAL-737 1994 chr3R 24912481 24912513 chr3R 24912563 24912595 7 81 2.5 4.0 3.2 1.7 114 chr3R 24912481 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912595 intergenic CR44267 + chr3R_7_24910001 chr3R_24910001 RAL-737 1995 chr3R 24927135 24927152 chr3R 24931914 24931943 Doc 12 4788 6.0 3.0 4.5 2.2 4808 chr3R 24927135 intergenic Trf4-2 + chr3R 24929539 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_12_24925001 chr3R_24925001 RAL-737 1996 chr3R 24974915 24974933 chr3R 24974994 24975012 7 79 6.0 10.5 8.2 0.8 97 chr3R 24974915 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975012 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-737 1997 chr3R 25004900 25004920 chr3R 25004983 25005001 6 83 1.5 4.0 2.8 1.6 101 chr3R 25004900 intron tnc + chr3R 25004950 intron tnc + chr3R 25005001 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-737 1998 chr3R 25018260 25018290 chr3R 25018337 25018366 12 70 4.5 6.0 5.2 1.9 106 chr3R 25018260 exon tnc + chr3R 25018313 exon tnc + chr3R 25018366 exon tnc + chr3R_12_25015001 chr3R_25015001 RAL-737 1999 chr3R 25027538 25027569 chr3R 25027751 25027782 12 209 5.5 5.0 5.2 1.9 244 chr3R 25027538 intron Hr96 + chr3R 25027660 intron Hr96 + chr3R 25027782 intron Hr96 + chr3R_12_25025001 chr3R_25025001 RAL-737 2000 chr3R 25072756 25072794 chr3R 25072848 25072852 25 89 3.5 6.0 4.8 4.3 96 chr3R 25072756 3` UTR CG9996 - chr3R 25072804 3` UTR CG9996 - chr3R 25072852 3` UTR CG9996 - chr3R_25_25070001 chr3R_25070001 RAL-737 2001 chr3R 25159506 25159540 chr3R 25159594 25159613 13 84 3.5 1.0 2.2 4.1 107 chr3R 25159506 intergenic not near genes chr3R 25159560 intergenic not near genes chr3R 25159613 intergenic not near genes chr3R_13_25155001 chr3R_25155001 RAL-737 2002 chr3R 25209598 25209629 chr3R 25209680 25209711 10 82 6.0 8.5 7.2 1.2 113 chr3R 25209598 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209711 intron CG13654 + chr3R_10_25205001 chr3R_25205001 RAL-737 2003 chr3R 25235696 25235719 chr3R 25235786 25235809 8 90 3.5 3.5 3.5 1.8 113 chr3R 25235696 intergenic CG10420 - chr3R 25235752 intergenic CG10420 - chr3R 25235809 intergenic CG10420 - chr3R_8_25235001 chr3R_25235001 RAL-737 2004 chr3R 25267873 25267879 chr3R 25267963 25267984 7 99 0.5 3.5 2.0 2.3 111 chr3R 25267873 intron CR45214 - chr3R 25267928 intron CR45214 - chr3R 25267984 3` UTR CR45214 - chr3R_7_25265001 chr3R_25265001 RAL-737 2005 chr3R 25269251 25269260 chr3R 25269302 25269337 7 66 0.0 2.0 1.0 3.5 86 chr3R 25269251 intron CR45214 - chr3R 25269294 intron CR45214 - chr3R 25269337 intron CR45214 - chr3R_7_25265001 chr3R_25265001 RAL-737 2006 chr3R 25283024 25283056 chr3R 25283227 25283257 14 200 6.5 5.0 5.8 2.1 233 chr3R 25283024 exon CG11892 + chr3R 25283140 3` UTR CG11892 + chr3R 25283257 intergenic CG11892 +,CG31300 + chr3R_14_25280001 chr3R_25280001 RAL-737 2007 chr3R 25368478 25368504 chr3R 25368591 25368622 9 117 3.5 0.0 1.8 3.2 144 chr3R 25368478 intron Fur1 - chr3R 25368550 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_9_25365001 chr3R_25365001 RAL-737 2008 chr3R 25371203 25371229 chr3R 25371278 25371299 7 75 4.5 4.0 4.2 1.3 96 chr3R 25371203 intron Fur1 - chr3R 25371251 intron Fur1 - chr3R 25371299 intron Fur1 - chr3R_7_25370001 chr3R_25370001 RAL-737 2009 chr3R 25374836 25374870 chr3R 25374914 25374948 18 75 4.5 4.5 4.5 3.3 112 chr3R 25374836 intron Fur1 - chr3R 25374892 intron Fur1 - chr3R 25374948 intron Fur1 - chr3R_18_25370001 chr3R_25370001 RAL-737 2010 chr3R 25509472 25509507 chr3R 25509551 25509586 15 77 3.5 2.5 3.0 3.8 114 chr3R 25509472 intergenic not near genes chr3R 25509529 intergenic not near genes chr3R 25509586 intergenic not near genes chr3R_15_25505001 chr3R_25505001 RAL-737 2011 chr3R 25587367 25587397 chr3R 25587468 25587497 15 98 5.0 6.5 5.8 2.2 130 chr3R 25587367 intron msi + chr3R 25587432 intron msi + chr3R 25587497 intron msi + chr3R_15_25585001 chr3R_25585001 RAL-737 2012 chr3R 25668328 25668360 chr3R 25668508 25668540 16 175 4.5 1.5 3.0 4.0 212 chr3R 25668328 intron Lgr3 + chr3R 25668434 intron Lgr3 + chr3R 25668540 intron Lgr3 + chr3R_16_25665001 chr3R_25665001 RAL-737 2013 chr3R 25671249 25671251 chr3R 25671347 25671349 5 98 11.5 0.5 6.0 0.7 100 chr3R 25671249 intron Lgr3 + chr3R 25671299 intron Lgr3 + chr3R 25671349 intron Lgr3 + chr3R_5_25670001 chr3R_25670001 RAL-737 2014 chr3R 25720822 25720831 chr3R 25720898 25720916 4 82 0.5 8.0 4.2 0.8 94 chr3R 25720822 intron LpR2 - chr3R 25720869 intron LpR2 - chr3R 25720916 intron LpR2 - chr3R_4_25720001 chr3R_25720001 RAL-737 2015 chr3R 25725827 25725861 chr3R 25734987 25735021 roo 10 9160 3.5 2.0 2.8 2.6 9194 chr3R 25725827 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735021 intron LpR2 - chr3R_10_25730001 chr3R_25730001 RAL-737 2016 chr3R 25738629 25738650 chr3R 25738717 25738738 5 88 8.5 5.0 6.8 0.6 109 chr3R 25738629 intron LpR2 - chr3R 25738684 intron LpR2 - chr3R 25738738 intron LpR2 - chr3R_5_25735001 chr3R_25735001 RAL-737 2017 chr3R 25738651 25738664 chr3R 25738716 25738720 7 74 4.0 5.0 4.5 1.3 69 chr3R 25738651 intron LpR2 - chr3R 25738686 intron LpR2 - chr3R 25738720 intron LpR2 - chr3R_7_25735001 chr3R_25735001 RAL-737 2018 chr3R 25765882 25765911 chr3R 25765956 25765990 6 75 3.5 3.5 3.5 1.3 108 chr3R 25765882 intergenic not near genes chr3R 25765936 intergenic not near genes chr3R 25765990 intergenic not near genes chr3R_6_25765001 chr3R_25765001 RAL-737 2019 chr3R 25832702 25832724 chr3R 25841878 25841906 roo 5 9173 0.5 8.0 4.2 1.0 9204 chr3R 25832702 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-737 2020 chr3R 25843636 25843665 chr3R 25843766 25843795 9 130 1.5 5.0 3.2 2.1 159 chr3R 25843636 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843795 intergenic CR45653 + chr3R_9_25840001 chr3R_25840001 RAL-737 2021 chr3R 25900385 25900424 chr3R 25900464 25900467 19 72 4.0 7.5 5.8 2.8 82 chr3R 25900385 5` UTR CG31091 + chr3R 25900426 5` UTR CG31091 + chr3R 25900467 5` UTR CG31091 + chr3R_19_25900001 chr3R_25900001 RAL-737 2022 chr3R 25908683 25908695 chr3R 25908765 25908777 7 81 9.0 8.0 8.5 0.7 94 chr3R 25908683 intron CG42235 + chr3R 25908730 intron CG42235 + chr3R 25908777 intron CG42235 + chr3R_7_25905001 chr3R_25905001 RAL-737 2023 chr3R 25908697 25908709 chr3R 25908759 25908771 11 73 5.0 6.5 5.8 1.6 74 chr3R 25908697 intron CG42235 + chr3R 25908734 intron CG42235 + chr3R 25908771 intron CG42235 + chr3R_11_25905001 chr3R_25905001 RAL-737 2024 chr3R 25932744 25932754 chr3R 25933136 25933145 5 392 3.5 4.5 4.0 1.0 401 chr3R 25932744 intron CCAP-R - chr3R 25932944 intron CCAP-R - chr3R 25933145 intron CCAP-R - chr3R_5_25930001 chr3R_25930001 RAL-737 2025 chr3R 26093850 26093866 chr3R 26093928 26093944 6 78 2.5 6.5 4.5 1.1 94 chr3R 26093850 intron dys - chr3R 26093897 intron dys - chr3R 26093944 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-737 2026 chr3R 26093867 26093873 chr3R 26093925 26093951 5 74 1.0 5.5 3.2 1.2 84 chr3R 26093867 intron dys - chr3R 26093909 intron dys - chr3R 26093951 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-737 2027 chr3R 26104063 26104095 chr3R 26105142 26105179 11 1083 38.0 33.0 35.5 0.3 1116 chr3R 26104063 intergenic not near genes chr3R 26104621 intergenic not near genes chr3R 26105179 intergenic not near genes chr3R_11_26100001 chr3R_26100001 RAL-737 2028 chr3R 26121952 26121969 chr3R 26122049 26122066 8 97 1.5 6.5 4.0 1.6 114 chr3R 26121952 intron CG31324 + chr3R 26122009 intron CG31324 + chr3R 26122066 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-737 2029 chr3R 26126275 26126291 chr3R 26126379 26126396 6 105 3.5 2.5 3.0 1.5 121 chr3R 26126275 intron CG31324 + chr3R 26126336 intron CG31324 + chr3R 26126396 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-737 2030 chr3R 26132487 26132517 chr3R 26132747 26132772 13 255 26.5 27.0 26.8 0.5 285 chr3R 26132487 intergenic not near genes chr3R 26132630 intergenic not near genes chr3R 26132772 intergenic CG6142 + chr3R_13_26130001 chr3R_26130001 RAL-737 2031 chr3R 26131190 26131193 chr3R 26135294 26135317 8 4106 26.0 17.5 21.8 0.4 4127 chr3R 26131190 intergenic not near genes chr3R 26133254 5` UTR CG6142 + chr3R 26135317 exon CG6142 + chr3R_8_26130001 chr3R_26130001 RAL-737 2032 chr3R 26148689 26148704 chr3R 26148813 26148828 11 122 6.0 9.5 7.8 1.2 139 chr3R 26148689 intergenic not near genes chr3R 26148758 intergenic not near genes chr3R 26148828 intergenic not near genes chr3R_11_26145001 chr3R_26145001 RAL-737 2033 chr3R 26148705 26148724 chr3R 26148811 26148848 14 121 2.0 9.0 5.5 2.2 143 chr3R 26148705 intergenic not near genes chr3R 26148776 intergenic not near genes chr3R 26148848 intergenic not near genes chr3R_14_26145001 chr3R_26145001 RAL-737 2034 chr3R 26159332 26159338 chr3R 26159387 26159417 4 71 2.0 5.0 3.5 0.9 85 chr3R 26159332 intergenic not near genes chr3R 26159374 intergenic not near genes chr3R 26159417 intergenic not near genes chr3R_4_26155001 chr3R_26155001 RAL-737 2035 chr3R 26241250 26241279 chr3R 26241341 26241370 8 88 3.5 3.5 3.5 1.8 120 chr3R 26241250 intron CR42745 + chr3R 26241310 intron CR42745 + chr3R 26241370 intron CR42745 + chr3R_8_26240001 chr3R_26240001 RAL-737 2036 chr3R 26309240 26309275 chr3R 26309502 26309537 15 261 4.5 5.5 5.0 2.5 297 chr3R 26309240 intergenic not near genes chr3R 26309388 intergenic not near genes chr3R 26309537 intergenic not near genes chr3R_15_26305001 chr3R_26305001 RAL-737 2037 chr3R 26376323 26376358 chr3R 26385482 26385511 roo 14 9155 3.0 2.5 2.8 3.7 9188 chr3R 26376323 intergenic not near genes chr3R 26380917 intergenic not near genes chr3R 26385511 intergenic not near genes chr3R_14_26380001 chr3R_26380001 RAL-737 2038 chr3R 26386706 26386724 chr3R 26386893 26386911 4 187 4.5 2.0 3.2 1.0 205 chr3R 26386706 intergenic not near genes chr3R 26386808 intergenic not near genes chr3R 26386911 intergenic not near genes chr3R_4_26385001 chr3R_26385001 RAL-737 2039 chr3R 26405448 26405466 chr3R 26405578 26405593 10 129 2.0 0.0 1.0 5.0 145 chr3R 26405448 intergenic not near genes chr3R 26405520 intergenic not near genes chr3R 26405593 intergenic not near genes chr3R_10_26405001 chr3R_26405001 RAL-737 2040 chr3R 26510522 26510535 chr3R 26519576 26519577 roo 9 9052 4.5 3.0 3.8 1.9 9055 chr3R 26510522 intron plum - chr3R 26515050 intron plum - chr3R 26519577 intron plum - chr3R_9_26515001 chr3R_26515001 RAL-737 2041 chr3R 26558325 26558358 chr3R 26565637 26565669 Stalker4 12 7306 3.0 3.0 3.0 3.0 7344 chr3R 26558325 intron scrib + chr3R 26561997 intron scrib + chr3R 26565669 intron scrib + chr3R_12_26560001 chr3R_26560001 RAL-737 2042 chr3R 26642730 26642747 chr3R 26643123 26643141 jockey 8 392 12.0 9.0 10.5 0.7 411 chr3R 26642730 intergenic not near genes chr3R 26642936 intergenic not near genes chr3R 26643141 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-737 2043 chr3R 26642757 26642759 chr3R 26643119 26643147 jockey 4 384 8.5 8.5 8.5 0.4 390 chr3R 26642757 intergenic not near genes chr3R 26642952 intergenic not near genes chr3R 26643147 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-737 2044 chr3R 26698839 26698866 chr3R 26698918 26698944 12 74 3.5 5.5 4.5 2.2 105 chr3R 26698839 3` UTR amon - chr3R 26698892 3` UTR amon - chr3R 26698944 3` UTR amon - chr3R_12_26695001 chr3R_26695001 RAL-737 2045 chr3R 26770241 26770274 chr3R 26770318 26770351 19 75 2.5 6.0 4.2 3.7 110 chr3R 26770241 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_19_26770001 chr3R_26770001 RAL-737 2046 chr3R 26789601 26789623 chr3R 26789680 26789702 10 79 0.5 2.0 1.2 4.5 101 chr3R 26789601 intergenic not near genes chr3R 26789652 intergenic not near genes chr3R 26789702 intergenic not near genes chr3R_10_26785001 chr3R_26785001 RAL-737 2047 chr3R 26810551 26810585 chr3R 26811036 26811070 roo 8 485 5.0 5.5 5.2 1.3 519 chr3R 26810551 intron Tl + chr3R 26810810 intron Tl + chr3R 26811070 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-737 2048 chr3R 26908028 26908065 chr3R 26908125 26908162 14 94 3.0 5.0 4.0 2.8 134 chr3R 26908028 intron T48 + chr3R 26908095 intron T48 + chr3R 26908162 intron T48 + chr3R_14_26905001 chr3R_26905001 RAL-737 2049 chr3R 26990888 26990919 chr3R 26990971 26990979 16 79 5.0 7.5 6.2 2.2 91 chr3R 26990888 intergenic not near genes chr3R 26990934 intergenic not near genes chr3R 26990979 intergenic not near genes chr3R_16_26990001 chr3R_26990001 RAL-737 2050 chr3R 27007418 27007422 chr3R 27016552 27016557 roo 4 9134 6.0 6.5 6.2 0.6 9139 chr3R 27007418 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016557 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-737 2051 chr3R 27027690 27027697 chr3R 27027770 27027779 6 82 7.0 2.0 4.5 1.1 89 chr3R 27027690 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027779 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-737 2052 chr3R 27028724 27028756 chr3R 27028802 27028835 6 79 2.0 6.0 4.0 1.2 111 chr3R 27028724 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-737 2053 chr3R 27041815 27041846 chr3R 27041905 27041933 16 87 5.5 7.0 6.2 2.2 118 chr3R 27041815 intron RYa-R + chr3R 27041874 intron RYa-R + chr3R 27041933 intron RYa-R + chr3R_16_27040001 chr3R_27040001 RAL-737 2054 chr3R 27140513 27140548 chr3R 27148123 27148157 412 10 7604 7.0 7.0 7.0 1.2 7644 chr3R 27140513 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_10_27140001 chr3R_27140001 RAL-737 2055 chr3R 27316000 27316011 chr3R 27316075 27316087 5 75 5.0 2.0 3.5 1.1 87 chr3R 27316000 intron CG3339 - chr3R 27316044 intron CG3339 - chr3R 27316087 exon CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-737 2056 chr3R 27329475 27329500 chr3R 27329552 27329577 6 76 4.5 3.5 4.0 1.2 102 chr3R 27329475 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329577 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-737 2057 chr3R 27342791 27342825 chr3R 27351372 27351406 Tirant 23 8578 2.5 6.0 4.2 4.4 8615 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_23_27345001 chr3R_27345001 RAL-737 2058 chr3R 27452587 27452608 chr3R 27452767 27452786 8 180 3.0 5.0 4.0 1.6 199 chr3R 27452587 intergenic not near genes chr3R 27452686 intergenic not near genes chr3R 27452786 intergenic not near genes chr3R_8_27450001 chr3R_27450001 RAL-737 2059 chr3R 27470886 27470905 chr3R 27470999 27471018 6 112 4.5 1.5 3.0 1.5 132 chr3R 27470886 intergenic not near genes chr3R 27470952 intergenic not near genes chr3R 27471018 intergenic not near genes chr3R_6_27470001 chr3R_27470001 RAL-737 2060 chr3R 27470906 27470912 chr3R 27470995 27471001 4 94 2.5 1.5 2.0 1.3 95 chr3R 27470906 intergenic not near genes chr3R 27470954 intergenic not near genes chr3R 27471001 intergenic not near genes chr3R_4_27470001 chr3R_27470001 RAL-737 2061 chr3R 27494322 27494349 chr3R 27494438 27494468 14 117 3.0 7.0 5.0 2.3 146 chr3R 27494322 intergenic not near genes chr3R 27494395 intergenic not near genes chr3R 27494468 intergenic not near genes chr3R_14_27490001 chr3R_27490001 RAL-737 2062 chr3R 27521155 27521189 chr3R 27530364 27530398 roo 10 9209 2.0 6.0 4.0 2.0 9243 chr3R 27521155 intron CG12885 + chr3R 27525776 intron CG12885 + chr3R 27530398 intron CG12885 + chr3R_10_27525001 chr3R_27525001 RAL-737 2063 chr3R 27545682 27545704 chr3R 27545758 27545762 10 74 4.0 5.0 4.5 1.8 80 chr3R 27545682 exon Gr98c + chr3R 27545722 intron Gr98c + chr3R 27545762 exon Gr98c + chr3R_10_27545001 chr3R_27545001 RAL-737 2064 chr3R 27619706 27619730 chr3R 27619821 27619822 7 105 3.5 5.0 4.2 1.3 116 chr3R 27619706 intron Tusp + chr3R 27619764 intron Tusp + chr3R 27619822 intron Tusp + chr3R_7_27615001 chr3R_27615001 RAL-737 2065 chr3R 27627085 27627119 chr3R 27627187 27627198 12 94 3.0 4.0 3.5 2.7 113 chr3R 27627085 intron Tusp + chr3R 27627142 intron Tusp + chr3R 27627198 intron Tusp + chr3R_12_27625001 chr3R_27625001 RAL-737 2066 chr3R 27648607 27648861 chr3R 27648670 27648938 7 72 6.5 0.5 3.5 1.6 331 chr3R 27648607 intron tau - chr3R 27648772 intron tau - chr3R 27648938 intron tau - chr3R_7_27645001 chr3R_27645001 RAL-737 2067 chr3R 27679956 27679971 chr3R 27680061 27680092 5 114 3.0 3.5 3.2 1.2 136 chr3R 27679956 3` UTR CG12883 + chr3R 27680024 3` UTR CG12883 + chr3R 27680092 3` UTR CG12883 + chr3R_5_27680001 chr3R_27680001 RAL-737 2068 chr3R 27705361 27705391 chr3R 27705437 27705470 5 74 1.5 1.5 1.5 2.0 109 chr3R 27705361 exon CG12428 - chr3R 27705416 intron CG12428 - chr3R 27705470 exon CG12428 - chr3R_5_27705001 chr3R_27705001 RAL-737 2069 chr3R 27725565 27725600 chr3R 27731007 27731014 I-element 17 5438 7.0 2.5 4.8 2.9 5449 chr3R 27725565 intergenic not near genes chr3R 27728290 intergenic not near genes chr3R 27731014 intergenic not near genes chr3R_17_27725001 chr3R_27725001 RAL-737 2070 chr3R 27731203 27731230 chr3R 27731279 27731291 10 76 4.0 10.0 7.0 1.2 88 chr3R 27731203 intergenic not near genes chr3R 27731247 intergenic not near genes chr3R 27731291 intergenic not near genes chr3R_10_27730001 chr3R_27730001 RAL-737 2071 chr3R 27737740 27737773 chr3R 27737830 27737843 8 88 10.5 4.0 7.2 1.0 103 chr3R 27737740 intron Ets98B + chr3R 27737792 intron Ets98B + chr3R 27737843 intron Ets98B + chr3R_8_27735001 chr3R_27735001 RAL-737 2072 chr3R 27743555 27743562 chr3R 27743643 27743650 8 88 5.0 2.0 3.5 1.8 95 chr3R 27743555 intron Ets98B + chr3R 27743602 intron Ets98B + chr3R 27743650 intron Ets98B + chr3R_8_27740001 chr3R_27740001 RAL-737 2073 chr3R 27799940 27799961 chr3R 27800022 27800043 11 81 3.5 2.0 2.8 2.9 103 chr3R 27799940 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_11_27795001 chr3R_27795001 RAL-737 2074 chr3R 27856763 27856789 chr3R 27858246 27858252 hopper2 11 1480 7.0 7.5 7.2 1.3 1489 chr3R 27856763 intron CG34353 - chr3R 27857508 intron CG34353 - chr3R 27858252 intron CG34353 - chr3R_11_27855001 chr3R_27855001 RAL-737 2075 chr3R 27862953 27862982 chr3R 27868258 27868270 Transpac 14 5297 4.0 5.0 4.5 2.5 5317 chr3R 27862953 intron CG34353 - chr3R 27865612 intron CG34353 - chr3R 27868270 intron CG34353 - chr3R_14_27865001 chr3R_27865001 RAL-737 2076 chr3R 27875704 27875732 chr3R 27882753 27882784 297 18 7051 3.5 9.0 6.2 2.5 7080 chr3R 27875704 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_18_27875001 chr3R_27875001 RAL-737 2077 chr3R 27886820 27886855 chr3R 27886916 27886933 13 89 3.5 6.0 4.8 2.2 113 chr3R 27886820 intron CG34353 - chr3R 27886876 intron CG34353 - chr3R 27886933 intron CG34353 - chr3R_13_27885001 chr3R_27885001 RAL-737 2078 chr3R 27911247 27911260 chr3R 27911325 27911337 10 78 4.0 6.0 5.0 1.7 90 chr3R 27911247 intergenic not near genes chr3R 27911292 intergenic not near genes chr3R 27911337 intergenic not near genes chr3R_10_27910001 chr3R_27910001 RAL-737 2079 chr3R 27993186 27993216 chr3R 27993263 27993263 13 68 3.0 5.5 4.2 2.5 77 chr3R 27993186 intergenic not near genes chr3R 27993224 intergenic not near genes chr3R 27993263 intergenic not near genes chr3R_13_27990001 chr3R_27990001 RAL-737 2080 chr3R 28054450 28054466 chr3R 28054526 28054542 10 76 4.5 7.5 6.0 1.4 92 chr3R 28054450 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054542 intron CG34362 + chr3R_10_28050001 chr3R_28050001 RAL-737 2081 chr3R 28068494 28068527 chr3R 28073935 28073966 I-element 10 5441 6.5 1.0 3.8 2.1 5472 chr3R 28068494 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073966 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-737 2082 chr3R 28173669 28173704 chr3R 28181099 28181134 mdg1 10 7430 3.5 5.5 4.5 1.8 7465 chr3R 28173669 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_10_28175001 chr3R_28175001 RAL-737 2083 chr3R 28253358 28253369 chr3R 28255843 28255879 jockey 11 2500 2.5 5.0 3.8 2.3 2521 chr3R 28253358 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-737 2084 chr3R 28282987 28283003 chr3R 28283616 28283617 11 628 10.0 8.0 9.0 1.1 630 chr3R 28282987 exon CG34436 + chr3R 28283302 exon CG34436 + chr3R 28283617 intergenic CG34436 +,CG34437 + chr3R_11_28280001 chr3R_28280001 RAL-737 2085 chr3R 28283005 28283008 chr3R 28283615 28283636 4 624 10.0 6.5 8.2 0.4 631 chr3R 28283005 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283636 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-737 2086 chr3R 28283009 28283019 chr3R 28283612 28283624 9 621 6.5 5.0 5.8 1.3 615 chr3R 28283009 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283624 intergenic CG34436 +,CG34437 + chr3R_9_28280001 chr3R_28280001 RAL-737 2087 chr3R 28302101 28302133 chr3R 28302540 28302549 jockey 14 434 6.5 7.0 6.8 1.8 448 chr3R 28302101 intergenic not near genes chr3R 28302325 intergenic not near genes chr3R 28302549 intergenic not near genes chr3R_14_28300001 chr3R_28300001 RAL-737 2088 chr3R 28331510 28331528 chr3R 28331589 28331607 5 79 1.5 4.5 3.0 1.2 97 chr3R 28331510 intron larp - chr3R 28331558 intron larp - chr3R 28331607 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-737 2089 chr3R 28393709 28393727 chr3R 28393798 28393827 10 97 4.5 2.5 3.5 2.2 118 chr3R 28393709 intergenic not near genes chr3R 28393768 intergenic not near genes chr3R 28393827 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-737 2090 chr3R 28407709 28407741 chr3R 28407789 28407804 14 81 3.5 3.0 3.2 3.3 95 chr3R 28407709 intergenic not near genes chr3R 28407756 intergenic not near genes chr3R 28407804 intergenic not near genes chr3R_14_28405001 chr3R_28405001 RAL-737 2091 chr3R 28478495 28478524 chr3R 28478568 28478600 12 73 2.5 8.0 5.2 1.9 105 chr3R 28478495 intergenic not near genes chr3R 28478548 intergenic not near genes chr3R 28478600 intergenic not near genes chr3R_12_28475001 chr3R_28475001 RAL-737 2092 chr3R 28479150 28479167 chr3R 28479248 28479265 8 97 5.5 6.5 6.0 1.1 115 chr3R 28479150 intergenic not near genes chr3R 28479208 intergenic not near genes chr3R 28479265 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-737 2093 chr3R 28702929 28702955 chr3R 28703012 28703033 10 83 6.0 4.0 5.0 1.7 104 chr3R 28702929 intron htt + chr3R 28702981 intron htt + chr3R 28703033 intron htt + chr3R_10_28700001 chr3R_28700001 RAL-737 2094 chr3R 28792874 28792903 chr3R 28797963 28797983 jockey 6 5091 2.0 2.0 2.0 2.0 5109 chr3R 28792874 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797983 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-737 2095 chr3R 28811595 28811603 chr3R 28811741 28811749 4 146 2.0 6.5 4.2 0.8 154 chr3R 28811595 intergenic wdn - chr3R 28811672 intergenic wdn -,CG1646 + chr3R 28811749 intergenic CG1646 +,wdn - chr3R_4_28810001 chr3R_28810001 RAL-737 2096 chr3R 21907534 21907536 chr3R 28831801 28831802 63 6924266 32.0 19.5 25.8 2.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_63_25365001 chr3R_25365001 RAL-737 2097 chr3R 28985073 28985092 chr3R 28985177 28985196 6 103 1.0 4.5 2.8 1.6 123 chr3R 28985073 intergenic not near genes chr3R 28985134 intergenic not near genes chr3R 28985196 intergenic not near genes chr3R_6_28985001 chr3R_28985001 RAL-737 2098 chr3R 28989903 28989934 chr3R 28990078 28990109 10 175 1.5 5.5 3.5 2.2 206 chr3R 28989903 intergenic not near genes chr3R 28990006 intergenic not near genes chr3R 28990109 intergenic not near genes chr3R_10_28990001 chr3R_28990001 RAL-737 2099 chr3R 29004809 29004841 chr3R 29004889 29004921 15 79 1.0 2.5 1.8 5.4 112 chr3R 29004809 intron wat - chr3R 29004865 intron wat - chr3R 29004921 intron wat - chr3R_15_29000001 chr3R_29000001 RAL-737 2100 chr3R 29079379 29079411 chr3R 29080751 29080766 NOF 12 1366 5.5 4.5 5.0 2.0 1387 chr3R 29079379 intron CG11873 + chr3R 29080072 intron CG11873 + chr3R 29080766 intron CG11873 + chr3R_12_29080001 chr3R_29080001 RAL-737 2101 chr3R 29213059 29213091 chr3R 29213142 29213174 18 82 7.5 10.0 8.8 1.8 115 chr3R 29213059 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_18_29210001 chr3R_29210001 RAL-737 2102 chr3R 29237265 29237285 chr3R 29239266 29239289 11 2007 19.5 8.5 14.0 0.7 2024 chr3R 29237265 exon CG11951 - chr3R 29238277 intron CG11951 - chr3R 29239289 exon CG31427 - chr3R_11_29235001 chr3R_29235001 RAL-737 2103 chr3R 29238776 29238788 chr3R 29238890 29238902 5 114 5.0 8.5 6.8 0.6 126 chr3R 29238776 intergenic CG31427 -,CG11951 - chr3R 29238839 3` UTR CG31427 - chr3R 29238902 3` UTR CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-737 2104 chr3R 29240312 29240345 chr3R 29240394 29240429 16 84 3.5 2.5 3.0 4.0 117 chr3R 29240312 5` UTR CG31427 - chr3R 29240370 intergenic CG31427 -,CG31445 - chr3R 29240429 intergenic CG31427 -,CG31445 - chr3R_16_29240001 chr3R_29240001 RAL-737 2105 chr3R 29249907 29249919 chr3R 29249997 29250008 8 90 9.5 6.5 8.0 0.9 101 chr3R 29249907 intron SP1029 - chr3R 29249958 intron SP1029 - chr3R 29250008 intron SP1029 - chr3R_8_29245001 chr3R_29245001 RAL-737 2106 chr3R 29256265 29256293 chr3R 29256345 29256373 7 76 4.0 6.5 5.2 1.1 108 chr3R 29256265 intergenic CG45544 +,stg - chr3R 29256319 intergenic CG45544 + chr3R 29256373 intergenic CG45544 + chr3R_7_29255001 chr3R_29255001 RAL-737 2107 chr3R 29263505 29263521 chr3R 29263584 29263600 5 76 5.5 4.0 4.8 0.9 95 chr3R 29263505 intergenic not near genes chr3R 29263552 intergenic not near genes chr3R 29263600 intergenic not near genes chr3R_5_29260001 chr3R_29260001 RAL-737 2108 chr3R 29282818 29282833 chr3R 29282896 29282913 8 76 7.5 6.5 7.0 1.0 95 chr3R 29282818 intergenic not near genes chr3R 29282866 intergenic not near genes chr3R 29282913 intergenic not near genes chr3R_8_29280001 chr3R_29280001 RAL-737 2109 chr3R 29319827 29319850 chr3R 29320146 29320152 jockey 8 317 4.5 5.5 5.0 1.3 325 chr3R 29319827 intergenic Cnx99A - chr3R 29319990 intergenic Cnx99A - chr3R 29320152 intergenic not near genes chr3R_8_29315001 chr3R_29315001 RAL-737 2110 chr3R 29362855 29362886 chr3R 29362944 29362951 13 85 0.0 2.5 1.2 5.9 96 chr3R 29362855 intergenic not near genes chr3R 29362903 intergenic not near genes chr3R 29362951 intergenic not near genes chr3R_13_29360001 chr3R_29360001 RAL-737 2111 chr3R 29375992 29376230 chr3R 29376078 29376306 8 79 0.0 6.0 3.0 2.0 314 chr3R 29375992 intergenic not near genes chr3R 29376149 intergenic not near genes chr3R 29376306 intergenic not near genes chr3R_8_29375001 chr3R_29375001 RAL-737 2112 chr3R 29402982 29403004 chr3R 29403077 29403099 8 95 0.0 2.0 1.0 4.0 117 chr3R 29402982 intron Ptp99A + chr3R 29403040 intron Ptp99A + chr3R 29403099 intron Ptp99A + chr3R_8_29400001 chr3R_29400001 RAL-737 2113 chr3R 29406612 29406648 chr3R 29407898 29407910 jockey 11 1281 3.5 6.5 5.0 1.8 1298 chr3R 29406612 intron Ptp99A + chr3R 29407261 intron Ptp99A + chr3R 29407910 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-737 2114 chr3R 29429791 29429806 chr3R 29429865 29429872 4 72 3.5 2.0 2.8 1.1 81 chr3R 29429791 intron Ptp99A + chr3R 29429832 intron Ptp99A + chr3R 29429872 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-737 2115 chr3R 29447823 29447850 chr3R 29447928 29447956 5 106 1.0 3.5 2.2 1.6 133 chr3R 29447823 intron Ptp99A + chr3R 29447890 intron Ptp99A + chr3R 29447956 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-737 2116 chr3R 29449355 29449391 chr3R 29449433 29449468 16 76 4.0 3.0 3.5 3.6 113 chr3R 29449355 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449468 intron Ptp99A + chr3R_16_29445001 chr3R_29445001 RAL-737 2117 chr3R 29452158 29452182 chr3R 29452231 29452232 4 63 5.0 5.0 5.0 0.7 74 chr3R 29452158 intron Ptp99A + chr3R 29452195 intron Ptp99A + chr3R 29452232 intron Ptp99A + chr3R_4_29450001 chr3R_29450001 RAL-737 2118 chr3R 29474438 29474448 chr3R 29474515 29474525 7 83 4.5 5.0 4.8 1.2 87 chr3R 29474438 intron Ptp99A + chr3R 29474482 intron Ptp99A + chr3R 29474525 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-737 2119 chr3R 29505896 29505921 chr3R 29505973 29505983 8 71 4.0 1.0 2.5 2.3 87 chr3R 29505896 intergenic not near genes chr3R 29505940 intergenic not near genes chr3R 29505983 intergenic not near genes chr3R_8_29505001 chr3R_29505001 RAL-737 2120 chr3R 29566383 29566410 chr3R 29566460 29566487 18 75 7.0 4.0 5.5 2.8 104 chr3R 29566383 intergenic not near genes chr3R 29566435 intergenic not near genes chr3R 29566487 intergenic not near genes chr3R_18_29565001 chr3R_29565001 RAL-737 2121 chr3R 29575835 29575846 chr3R 29575918 29575929 6 83 3.5 0.0 1.8 2.1 94 chr3R 29575835 intergenic not near genes chr3R 29575882 intergenic not near genes chr3R 29575929 intergenic not near genes chr3R_6_29575001 chr3R_29575001 RAL-737 2122 chr3R 29576736 29576751 chr3R 29576843 29576858 6 107 1.0 0.5 0.8 3.3 122 chr3R 29576736 intergenic not near genes chr3R 29576797 intergenic not near genes chr3R 29576858 intergenic not near genes chr3R_6_29575001 chr3R_29575001 RAL-737 2123 chr3R 29738264 29738298 chr3R 29739731 29739764 hobo 15 1465 4.5 4.0 4.2 2.9 1500 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739764 5` UTR CG1969 + chr3R_15_29735001 chr3R_29735001 RAL-737 2124 chr3R 29758944 29758953 chr3R 29759015 29759031 5 76 8.5 5.0 6.8 0.6 87 chr3R 29758944 3` UTR CR44953 - chr3R 29758988 3` UTR CR44953 - chr3R 29759031 3` UTR CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-737 2125 chr3R 29758954 29758971 chr3R 29759014 29759049 19 72 5.5 5.0 5.2 3.1 95 chr3R 29758954 3` UTR CR44953 - chr3R 29759002 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_19_29755001 chr3R_29755001 RAL-737 2126 chr3R 29760361 29760387 chr3R 29761562 29761588 pogo 14 1200 7.0 6.0 6.5 1.9 1227 chr3R 29760361 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761588 intergenic not near genes chr3R_14_29760001 chr3R_29760001 RAL-737 2127 chr3R 29854829 29854846 chr3R 29854909 29854920 4 78 6.5 4.0 5.2 0.6 91 chr3R 29854829 3` UTR dgt1 - chr3R 29854874 exon dgt1 - chr3R 29854920 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-737 2128 chr3R 29854853 29854859 chr3R 29854907 29854939 4 64 3.0 4.0 3.5 0.9 86 chr3R 29854853 3` UTR dgt1 - chr3R 29854896 exon dgt1 - chr3R 29854939 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-737 2129 chr3R 29882017 29882053 chr3R 29891174 29891210 roo 21 9156 4.5 4.0 4.2 4.0 9193 chr3R 29882017 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_21_29885001 chr3R_29885001 RAL-737 2130 chr3R 29968761 29968784 chr3R 29968945 29968968 10 183 6.0 5.5 5.8 1.5 207 chr3R 29968761 intron TkR99D - chr3R 29968864 intron TkR99D - chr3R 29968968 intron TkR99D - chr3R_10_29965001 chr3R_29965001 RAL-737 2131 chr3R 30032165 30032182 chr3R 30032244 30032248 12 77 5.0 4.0 4.5 2.2 83 chr3R 30032165 intron Axn + chr3R 30032206 intron Axn + chr3R 30032248 intron Axn + chr3R_12_30030001 chr3R_30030001 RAL-737 2132 chr3R 30084847 30084886 chr3R 30086314 30086353 hobo 19 1464 1.0 6.5 3.8 4.0 1506 chr3R 30084847 intron sima + chr3R 30085600 intron sima + chr3R 30086353 intron sima + chr3R_19_30085001 chr3R_30085001 RAL-737 2133 chr3R 30108822 30108858 chr3R 30108922 30108944 5 97 5.0 3.5 4.2 1.0 122 chr3R 30108822 intron sima + chr3R 30108883 intron sima + chr3R 30108944 intron sima + chr3R_5_30105001 chr3R_30105001 RAL-737 2134 chr3R 30112960 30112975 chr3R 30113036 30113051 5 76 4.5 6.0 5.2 0.8 91 chr3R 30112960 intron sima + chr3R 30113006 intron sima + chr3R 30113051 intron sima + chr3R_5_30110001 chr3R_30110001 RAL-737 2135 chr3R 30124965 30124971 chr3R 30125042 30125046 5 76 2.5 7.0 4.8 0.9 81 chr3R 30124965 intergenic CG45073 - chr3R 30125006 intergenic CG45073 - chr3R 30125046 intergenic CG45073 - chr3R_5_30125001 chr3R_30125001 RAL-737 2136 chr3R 30177743 30177774 chr3R 30177860 30177865 5 105 3.0 2.0 2.5 1.4 122 chr3R 30177743 intergenic CG1983 -,CG15530 + chr3R 30177804 intergenic CG15530 +,CG1983 - chr3R 30177865 intergenic CG15530 +,CG1983 - chr3R_5_30175001 chr3R_30175001 RAL-737 2137 chr3R 30179517 30179537 chr3R 30181660 30181682 5 2146 36.5 33.0 34.8 0.1 2165 chr3R 30179517 intron CG15530 + chr3R 30180600 exon Bet5 + chr3R 30181682 intergenic Bet5 + chr3R_5_30180001 chr3R_30180001 RAL-737 2138 chr3R 30238759 30238790 chr3R 30239923 30239954 1360 13 1163 3.0 5.0 4.0 2.6 1195 chr3R 30238759 intergenic not near genes chr3R 30239356 intergenic not near genes chr3R 30239954 intergenic not near genes chr3R_13_30235001 chr3R_30235001 RAL-737 2139 chr3R 30262575 30262611 chr3R 30262672 30262694 15 96 6.5 1.0 3.8 3.1 119 chr3R 30262575 intergenic not near genes chr3R 30262634 intergenic not near genes chr3R 30262694 intergenic not near genes chr3R_15_30260001 chr3R_30260001 RAL-737 2140 chr3R 30264475 30264480 chr3R 30264661 30264666 4 186 18.5 1.0 9.8 0.4 191 chr3R 30264475 intergenic not near genes chr3R 30264570 intergenic not near genes chr3R 30264666 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-737 2141 chr3R 30292769 30292797 chr3R 30292857 30292885 7 87 3.0 4.0 3.5 1.6 116 chr3R 30292769 intron hdc + chr3R 30292827 intron hdc + chr3R 30292885 intron hdc + chr3R_7_30290001 chr3R_30290001 RAL-737 2142 chr3R 30317327 30317358 chr3R 30324919 30324950 roo 6 7581 1.5 5.0 3.2 1.4 7623 chr3R 30317327 intron hdc + chr3R 30321138 intron hdc + chr3R 30324950 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-737 2143 chr3R 30375537 30375570 chr3R 30383162 30383177 412 9 7623 3.0 5.5 4.2 1.7 7640 chr3R 30375537 intergenic not near genes chr3R 30379357 intergenic not near genes chr3R 30383177 intergenic not near genes chr3R_9_30375001 chr3R_30375001 RAL-737 2144 chr3R 30396220 30396246 chr3R 30404486 30404512 roo 12 8264 3.5 6.5 5.0 2.0 8292 chr3R 30396220 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_12_30400001 chr3R_30400001 RAL-737 2145 chr3R 30456395 30456401 chr3R 30456475 30456481 5 80 6.0 7.5 6.8 0.6 86 chr3R 30456395 intergenic CG2224 - chr3R 30456438 intergenic CG2224 - chr3R 30456481 3` UTR CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-737 2146 chr3R 30456405 30456425 chr3R 30456470 30456492 5 74 1.5 6.0 3.8 1.0 87 chr3R 30456405 intergenic CG2224 - chr3R 30456448 3` UTR CG2224 - chr3R 30456492 3` UTR CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-737 2147 chr3R 30458010 30458046 chr3R 30458090 30458117 18 76 5.5 5.5 5.5 2.8 107 chr3R 30458010 intron CG2224 - chr3R 30458064 intron CG2224 - chr3R 30458117 intron CG2224 - chr3R_18_30455001 chr3R_30455001 RAL-737 2148 chr3R 30474582 30474598 chr3R 30474661 30474677 7 79 0.0 3.0 1.5 2.8 95 chr3R 30474582 intron PH4alphaEFB + chr3R 30474630 intron PH4alphaEFB + chr3R 30474677 intron PH4alphaEFB + chr3R_7_30470001 chr3R_30470001 RAL-737 2149 chr3R 30480478 30480510 chr3R 30482942 30482978 jockey 8 2465 1.5 10.5 6.0 1.1 2500 chr3R 30480478 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-737 2150 chr3R 30485039 30485065 chr3R 30485115 30485141 11 76 2.5 5.0 3.8 2.3 102 chr3R 30485039 intron PH4alphaEFB + chr3R 30485090 intron PH4alphaEFB + chr3R 30485141 intron PH4alphaEFB + chr3R_11_30485001 chr3R_30485001 RAL-737 2151 chr3R 30571699 30571730 chr3R 30571779 30571810 12 78 0.0 1.0 0.5 8.0 111 chr3R 30571699 intron tmod + chr3R 30571754 intron tmod + chr3R 30571810 exon tmod + chr3R_12_30570001 chr3R_30570001 RAL-737 2152 chr3R 30627607 30627636 chr3R 30627682 30627716 12 73 4.0 8.0 6.0 1.7 109 chr3R 30627607 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-737 2153 chr3R 30649844 30649875 chr3R 30649924 30649956 8 79 4.0 1.0 2.5 2.3 112 chr3R 30649844 3` UTR CG34432 + chr3R 30649900 intergenic CG34432 +,CG34433 + chr3R 30649956 intergenic CG34433 +,CG34432 + chr3R_8_30645001 chr3R_30645001 RAL-737 2154 chr3R 30664793 30664802 chr3R 30664888 30664897 7 95 4.0 0.0 2.0 2.3 104 chr3R 30664793 5` UTR CR45191 + chr3R 30664845 5` UTR CR45191 + chr3R 30664897 5` UTR CR45191 + chr3R_7_30660001 chr3R_30660001 RAL-737 2155 chr3R 30679519 30679546 chr3R 30686987 30687015 blood 7 7467 3.5 6.0 4.8 1.2 7496 chr3R 30679519 intergenic not near genes chr3R 30683267 intergenic not near genes chr3R 30687015 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-737 2156 chr3R 30690175 30690191 chr3R 30690246 30690275 10 73 3.5 6.0 4.8 1.7 100 chr3R 30690175 intergenic Spn100A + chr3R 30690225 intergenic Spn100A + chr3R 30690275 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-737 2157 chr3R 30700867 30700875 chr3R 30700990 30700998 5 123 5.0 1.5 3.2 1.2 131 chr3R 30700867 intergenic not near genes chr3R 30700932 intergenic not near genes chr3R 30700998 intergenic not near genes chr3R_5_30700001 chr3R_30700001 RAL-737 2158 chr3R 30818810 30818846 chr3R 30820375 30820405 1360 13 1563 4.5 4.5 4.5 2.4 1595 chr3R 30818810 intron cindr + chr3R 30819608 intron cindr + chr3R 30820405 intron cindr + chr3R_13_30815001 chr3R_30815001 RAL-737 2159 chr3R 30859407 30859427 chr3R 30859485 30859488 10 74 5.0 3.5 4.2 1.9 81 chr3R 30859407 intergenic not near genes chr3R 30859448 intergenic not near genes chr3R 30859488 intergenic not near genes chr3R_10_30855001 chr3R_30855001 RAL-737 2160 chr3R 30874392 30874417 chr3R 30874475 30874500 6 83 0.0 2.5 1.2 2.7 108 chr3R 30874392 3` UTR CG15546 - chr3R 30874446 3` UTR CG15546 - chr3R 30874500 3` UTR CG15546 - chr3R_6_30870001 chr3R_30870001 RAL-737 2161 chr3R 30900522 30900550 chr3R 30900602 30900630 12 76 6.0 5.5 5.8 1.8 108 chr3R 30900522 exon Cyp4c3 + chr3R 30900576 3` UTR Cyp4c3 + chr3R 30900630 3` UTR Cyp4c3 + chr3R_12_30900001 chr3R_30900001 RAL-737 2162 chr3R 30948084 30948106 chr3R 30948265 30948265 8 177 0.5 1.5 1.0 4.0 181 chr3R 30948084 intergenic not near genes chr3R 30948174 intergenic not near genes chr3R 30948265 intergenic not near genes chr3R_8_30945001 chr3R_30945001 RAL-737 2163 chr3R 30973133 30973162 chr3R 30973293 30973298 10 158 9.0 4.0 6.5 1.3 165 chr3R 30973133 intron 5-HT7 - chr3R 30973216 intron 5-HT7 - chr3R 30973298 intron 5-HT7 - chr3R_10_30970001 chr3R_30970001 RAL-737 2164 chr3R 31042109 31042144 chr3R 31042196 31042231 20 86 3.5 6.5 5.0 3.3 122 chr3R 31042109 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042231 intron CanA1 + chr3R_20_31040001 chr3R_31040001 RAL-737 2165 chr3R 31069644 31069663 chr3R 31069739 31069758 8 94 4.0 4.0 4.0 1.6 114 chr3R 31069644 intron Sox100B + chr3R 31069701 intron Sox100B + chr3R 31069758 intron Sox100B + chr3R_8_31065001 chr3R_31065001 RAL-737 2166 chr3R 31069665 31069677 chr3R 31069738 31069772 5 91 2.5 4.0 3.2 1.2 107 chr3R 31069665 intron Sox100B + chr3R 31069718 intron Sox100B + chr3R 31069772 intron Sox100B + chr3R_5_31065001 chr3R_31065001 RAL-737 2167 chr3R 31074231 31074262 chr3R 31081829 31081860 springer 6 7598 3.5 5.5 4.5 1.1 7629 chr3R 31074231 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-737 2168 chr3R 31087111 31087132 chr3R 31087615 31087644 5 510 1.5 5.0 3.2 1.2 533 chr3R 31087111 intergenic not near genes chr3R 31087378 intergenic not near genes chr3R 31087644 intergenic not near genes chr3R_5_31085001 chr3R_31085001 RAL-737 2169 chr3R 31090483 31090499 chr3R 31090609 31090615 8 119 7.5 4.0 5.8 1.2 132 chr3R 31090483 intergenic CG11317 - chr3R 31090549 intergenic CG11317 - chr3R 31090615 intergenic CG11317 - chr3R_8_31090001 chr3R_31090001 RAL-737 2170 chr3R 31137154 31137185 chr3R 31137234 31137265 10 76 3.5 3.0 3.2 2.4 111 chr3R 31137154 intron Gycbeta100B + chr3R 31137210 intron Gycbeta100B + chr3R 31137265 intron Gycbeta100B + chr3R_10_31135001 chr3R_31135001 RAL-737 2171 chr3R 31159583 31159590 chr3R 31159716 31159725 4 142 3.0 5.0 4.0 0.8 142 chr3R 31159583 intron,intron Gycbeta100B +,stops - chr3R 31159654 intron,intron Gycbeta100B +,stops - chr3R 31159725 intron,intron Gycbeta100B +,stops - chr3R_4_31155001 chr3R_31155001 RAL-737 2172 chr3R 31253060 31253085 chr3R 31253746 31253771 5 688 37.5 44.0 40.8 0.1 711 chr3R 31253060 exon mRpL32 + chr3R 31253416 exon mRpL32 + chr3R 31253771 exon CG1750 - chr3R_5_31250001 chr3R_31250001 RAL-737 2173 chr3R 31279398 31279407 chr3R 31285568 31285589 diver 6 6176 5.5 6.0 5.8 0.9 6191 chr3R 31279398 intergenic not near genes chr3R 31282494 intergenic not near genes chr3R 31285589 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-737 2174 chr3R 31320163 31320195 chr3R 31320258 31320290 11 95 3.5 3.5 3.5 2.4 127 chr3R 31320163 intron CG34347 + chr3R 31320226 intron CG34347 + chr3R 31320290 intron CG34347 + chr3R_11_31320001 chr3R_31320001 RAL-737 2175 chr3R 31413108 31413117 chr3R 31418288 31418317 copia 9 5190 4.0 2.0 3.0 2.2 5209 chr3R 31413108 intron Gprk2 + chr3R 31415712 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-737 2176 chr3R 31435371 31435381 chr3R 31435518 31435533 5 151 8.5 9.0 8.8 0.5 162 chr3R 31435371 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435533 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-737 2177 chr3R 31604380 31604405 chr3R 31604771 31604796 6 391 3.0 2.0 2.5 1.7 416 chr3R 31604380 intron CycG - chr3R 31604588 intron CycG - chr3R 31604796 intron CycG - chr3R_6_31600001 chr3R_31600001 RAL-737 2178 chr3R 31691535 31691560 chr3R 31696301 31696303 Doc 7 4760 5.0 7.0 6.0 1.0 4768 chr3R 31691535 intergenic not near genes chr3R 31693919 intergenic not near genes chr3R 31696303 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-737 2179 chr3R 31705734 31705740 chr3R 31706191 31706197 4 457 7.5 4.0 5.8 0.6 463 chr3R 31705734 intergenic CR45052 - chr3R 31705966 intergenic CR45052 - chr3R 31706197 intergenic not near genes chr3R_4_31705001 chr3R_31705001 RAL-737 2180 chr3R 31705750 31705765 chr3R 31706187 31706222 10 447 3.5 3.0 3.2 2.4 472 chr3R 31705750 intergenic CR45052 - chr3R 31705986 intergenic CR45052 - chr3R 31706222 intergenic not near genes chr3R_10_31705001 chr3R_31705001 RAL-737 2181 chr3R 31922070 31922076 chr3R 31922138 31922152 4 70 10.5 4.5 7.5 0.5 82 chr3R 31922070 intron heph - chr3R 31922111 intron heph - chr3R 31922152 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-737 2182 chr3R 31922077 31922088 chr3R 31922132 31922164 8 63 7.0 3.5 5.2 1.3 87 chr3R 31922077 intron heph - chr3R 31922120 intron heph - chr3R 31922164 intron heph - chr3R_8_31920001 chr3R_31920001 RAL-737 2183 chr3R 31962081 31962089 chr3R 31962387 31962389 4 304 3.0 3.0 3.0 1.0 308 chr3R 31962081 intron heph - chr3R 31962235 intron heph - chr3R 31962389 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-737 2184 chr3R 31976544 31976570 chr3R 31976825 31976851 11 281 0.0 4.5 2.2 3.4 307 chr3R 31976544 intron heph - chr3R 31976698 intron heph - chr3R 31976851 intron heph - chr3R_11_31975001 chr3R_31975001 RAL-737 2185 chr3R 31997992 31998023 chr3R 32005462 32005493 blood 15 7467 6.0 9.0 7.5 1.8 7501 chr3R 31997992 intron heph - chr3R 32001742 intron heph - chr3R 32005493 intron heph - chr3R_15_32000001 chr3R_32000001 RAL-737 2186 chr4 76492 76511 chr4 81935 81954 I-element 7 5443 10.0 6.0 8.0 0.8 5462 chr4 76492 intron pan + chr4 79223 intron pan + chr4 81954 intron pan + chr4_7_75001 chr4_75001 RAL-737 2187 chr4 264979 265000 chr4 265182 265203 11 203 5.0 2.5 3.8 2.3 224 chr4 264979 3` UTR RhoGAP102A + chr4 265091 3` UTR RhoGAP102A + chr4 265203 3` UTR RhoGAP102A + chr4_11_265001 chr4_265001 RAL-737 2188 chr4 319989 320019 chr4 328165 328195 Stalker2 9 8174 5.5 3.0 4.2 1.7 8206 chr4 319989 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328195 3` UTR,3` UTR CG32850 +,PMCA - chr4_9_320001 chr4_320001 RAL-737 2189 chr4 409217 409249 chr4 409300 409332 7 83 2.0 1.0 1.5 2.8 115 chr4 409217 intergenic not near genes chr4 409274 intergenic not near genes chr4 409332 intergenic not near genes chr4_7_405001 chr4_405001 RAL-737 2190 chr4 662197 662206 chr4 662838 662840 INE-1 4 641 3.5 4.5 4.0 0.8 643 chr4 662197 intron gw - chr4 662518 intron gw - chr4 662840 5` UTR gw - chr4_4_660001 chr4_660001 RAL-737 2191 chr4 671626 671634 chr4 680186 680190 Tirant 7 8572 6.5 8.5 7.5 0.8 8564 chr4 671626 intron CG11360 + chr4 675908 intron CG11360 + chr4 680190 intron CG11360 + chr4_7_675001 chr4_675001 RAL-737 2192 chr4 852896 852927 chr4 853260 853264 6 360 3.5 6.0 4.8 1.0 368 chr4 852896 intergenic not near genes chr4 853080 intergenic not near genes chr4 853264 intergenic CG11148 - chr4_6_850001 chr4_850001 RAL-737 2193 chrX 295862 295878 chrX 303477 303485 412 6 7616 2.0 5.0 3.5 1.3 7623 chrX 295862 intron CG3777 + chrX 299674 intron CG3777 + chrX 303485 intron CG3777 + chrX_6_295001 chrX_295001 RAL-737 2194 chrX 318475 318502 chrX 323561 323588 flea 8 5084 4.0 5.5 4.8 1.4 5113 chrX 318475 intron,intron CG3777 +,CG32816 - chrX 321032 intron,intron CG3777 +,CG32816 - chrX 323588 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-737 2195 chrX 428416 428450 chrX 434601 434635 3S18 14 6184 7.0 6.0 6.5 1.9 6219 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434635 intron CG32816 - chrX_14_430001 chrX_430001 RAL-737 2196 chrX 551423 551453 chrX 558985 559014 412 6 7560 7.5 5.0 6.2 0.8 7591 chrX 551423 intron Appl + chrX 555218 intron Appl + chrX 559014 intron Appl + chrX_6_555001 chrX_555001 RAL-737 2197 chrX 611136 611166 chrX 611226 611256 8 90 2.5 3.0 2.8 2.1 120 chrX 611136 intron CG13366 - chrX 611196 intron CG13366 - chrX 611256 intron CG13366 - chrX_8_610001 chrX_610001 RAL-737 2198 chrX 667652 667682 chrX 667732 667766 13 83 2.0 3.0 2.5 3.7 114 chrX 667652 intergenic not near genes chrX 667709 intergenic not near genes chrX 667766 intergenic not near genes chrX_13_665001 chrX_665001 RAL-737 2199 chrX 670263 670295 chrX 670343 670375 6 73 1.0 0.5 0.8 3.3 112 chrX 670263 intergenic not near genes chrX 670319 intergenic not near genes chrX 670375 intergenic not near genes chrX_6_670001 chrX_670001 RAL-737 2200 chrX 680840 680866 chrX 680922 680943 7 81 2.0 3.0 2.5 2.0 103 chrX 680840 intergenic not near genes chrX 680892 intergenic not near genes chrX 680943 intergenic not near genes chrX_7_680001 chrX_680001 RAL-737 2201 chrX 706824 706829 chrX 707162 707170 4 338 0.0 5.0 2.5 1.1 346 chrX 706824 intron sdk + chrX 706997 intron sdk + chrX 707170 intron sdk + chrX_4_705001 chrX_705001 RAL-737 2202 chrX 778127 778144 chrX 778217 778234 4 90 3.0 2.5 2.8 1.1 107 chrX 778127 intron fz3 + chrX 778180 intron fz3 + chrX 778234 intron fz3 + chrX_4_775001 chrX_775001 RAL-737 2203 chrX 778145 778160 chrX 778215 778250 8 86 1.5 2.5 2.0 2.7 105 chrX 778145 intron fz3 + chrX 778198 intron fz3 + chrX 778250 intron fz3 + chrX_8_775001 chrX_775001 RAL-737 2204 chrX 806789 806818 chrX 806885 806913 6 90 3.5 3.5 3.5 1.3 124 chrX 806789 intron Sec22 + chrX 806851 intron Sec22 + chrX 806913 intron Sec22 + chrX_6_805001 chrX_805001 RAL-737 2205 chrX 812273 812290 chrX 817900 817919 297 8 5627 3.0 4.5 3.8 1.7 5646 chrX 812273 intron CG43867 - chrX 815096 intron CG43867 - chrX 817919 intron CG43867 - chrX_8_815001 chrX_815001 RAL-737 2206 chrX 827604 827616 chrX 835396 835408 roo 5 7792 9.0 0.0 4.5 0.9 7804 chrX 827604 intron CG43867 - chrX 831506 intron CG43867 - chrX 835408 intron CG43867 - chrX_5_830001 chrX_830001 RAL-737 2207 chrX 827619 827623 chrX 835392 835399 roo 5 7783 6.5 0.0 3.2 1.2 7780 chrX 827619 intron CG43867 - chrX 831509 intron CG43867 - chrX 835399 intron CG43867 - chrX_5_830001 chrX_830001 RAL-737 2208 chrX 1051076 1051092 chrX 1051154 1051170 8 78 11.5 10.5 11.0 0.7 94 chrX 1051076 intron CR44779 + chrX 1051123 intron CR44779 + chrX 1051170 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-737 2209 chrX 1053117 1053120 chrX 16983076 16983077 6 15929958 8.0 27.0 17.5 0.3 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-737 2210 chrX 1142716 1142720 chrX 1142808 1142812 4 92 33.0 13.5 23.2 0.2 96 chrX 1142716 intergenic not near genes chrX 1142764 intergenic not near genes chrX 1142812 intergenic not near genes chrX_4_1140001 chrX_1140001 RAL-737 2211 chrX 1357780 1357806 chrX 1367945 1367976 Doc 10 10166 5.5 3.0 4.2 1.9 10196 chrX 1357780 intergenic png - chrX 1362878 intergenic not near genes chrX 1367976 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-737 2212 chrX 1428592 1428626 chrX 1428678 1428697 11 84 3.0 5.0 4.0 2.2 105 chrX 1428592 intron futsch + chrX 1428644 intron futsch + chrX 1428697 intron futsch + chrX_11_1425001 chrX_1425001 RAL-737 2213 chrX 1518048 1518066 chrX 1523440 1523453 jockey 13 5397 5.0 5.0 5.0 2.2 5405 chrX 1518048 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523453 intergenic not near genes chrX_13_1520001 chrX_1520001 RAL-737 2214 chrX 1627978 1628001 chrX 1635446 1635469 gtwin 4 7466 3.0 3.5 3.2 1.0 7491 chrX 1627978 intron,intron Mur2B -,br + chrX 1631724 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-737 2215 chrX 1930535 1930570 chrX 1938106 1938118 opus 13 7565 2.0 2.5 2.2 4.1 7583 chrX 1930535 intergenic CG11596 + chrX 1934326 intergenic not near genes chrX 1938118 3` UTR CG3857 - chrX_13_1930001 chrX_1930001 RAL-737 2216 chrX 1952555 1952580 chrX 1952774 1952800 7 219 4.5 3.0 3.8 1.5 245 chrX 1952555 intron Hr4 + chrX 1952678 intron Hr4 + chrX 1952800 intron Hr4 + chrX_7_1950001 chrX_1950001 RAL-737 2217 chrX 2429650 2429665 chrX 2429731 2429746 5 81 0.0 2.0 1.0 2.5 96 chrX 2429650 intergenic not near genes chrX 2429698 intergenic not near genes chrX 2429746 intergenic not near genes chrX_5_2425001 chrX_2425001 RAL-737 2218 chrX 2440207 2440223 chrX 2440296 2440314 5 93 7.0 8.0 7.5 0.6 107 chrX 2440207 intergenic not near genes chrX 2440260 intergenic not near genes chrX 2440314 intergenic not near genes chrX_5_2440001 chrX_2440001 RAL-737 2219 chrX 2440224 2440230 chrX 2440289 2440325 6 83 4.5 5.0 4.8 1.0 101 chrX 2440224 intergenic not near genes chrX 2440274 intergenic not near genes chrX 2440325 intergenic not near genes chrX_6_2440001 chrX_2440001 RAL-737 2220 chrX 2610387 2610400 chrX 2617504 2617507 HMS-Beagle 4 7114 4.5 3.5 4.0 0.8 7120 chrX 2610387 intergenic CG8636 - chrX 2613947 intergenic not near genes chrX 2617507 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-737 2221 chrX 2664385 2664418 chrX 2665531 2665560 1360 13 1144 6.0 6.5 6.2 1.8 1175 chrX 2664385 intron sgg + chrX 2664972 intron sgg + chrX 2665560 intron sgg + chrX_13_2660001 chrX_2660001 RAL-737 2222 chrX 2684344 2684381 chrX 2684488 2684524 8 137 0.0 0.5 0.2 6.7 180 chrX 2684344 intergenic CR44470 - chrX 2684434 intergenic not near genes chrX 2684524 intergenic not near genes chrX_8_2680001 chrX_2680001 RAL-737 2223 chrX 2801522 2801542 chrX 2801895 2801915 4 369 6.0 4.0 5.0 0.7 393 chrX 2801522 intron kirre + chrX 2801718 intron kirre + chrX 2801915 intron kirre + chrX_4_2800001 chrX_2800001 RAL-737 2224 chrX 2803506 2803528 chrX 2803649 2803658 7 139 1.0 4.5 2.8 1.8 152 chrX 2803506 intron kirre + chrX 2803582 intron kirre + chrX 2803658 intron kirre + chrX_7_2800001 chrX_2800001 RAL-737 2225 chrX 2844901 2844932 chrX 2852311 2852342 mdg1 16 7406 3.5 2.5 3.0 4.0 7441 chrX 2844901 intron kirre + chrX 2848622 intron kirre + chrX 2852342 intron kirre + chrX_16_2845001 chrX_2845001 RAL-737 2226 chrX 3058020 3058049 chrX 3058261 3058265 pogo 4 235 3.5 3.0 3.2 1.0 245 chrX 3058020 intron kirre + chrX 3058142 intron kirre + chrX 3058265 intron kirre + chrX_4_3055001 chrX_3055001 RAL-737 2227 chrX 3109447 3109476 chrX 3109524 3109528 16 74 5.5 5.5 5.5 2.5 81 chrX 3109447 intron kirre + chrX 3109488 intron kirre + chrX 3109528 intron kirre + chrX_16_3105001 chrX_3105001 RAL-737 2228 chrX 3120078 3120087 chrX 3120156 3120165 4 78 0.5 5.5 3.0 1.0 87 chrX 3120078 intron kirre + chrX 3120122 intron kirre + chrX 3120165 intron kirre + chrX_4_3120001 chrX_3120001 RAL-737 2229 chrX 3218509 3218532 chrX 3227658 3227681 roo 7 9149 2.5 4.5 3.5 1.6 9172 chrX 3218509 intron dnc + chrX 3223095 intron dnc + chrX 3227681 intron dnc + chrX_7_3220001 chrX_3220001 RAL-737 2230 chrX 3271406 3271424 chrX 3272019 3272037 4 612 3.5 0.0 1.8 1.4 631 chrX 3271406 intron dnc + chrX 3271722 intron dnc + chrX 3272037 intron dnc + chrX_4_3270001 chrX_3270001 RAL-737 2231 chrX 3306058 3306356 chrX 3306169 3306438 11 100 5.0 4.5 4.8 1.9 380 chrX 3306058 intron dnc + chrX 3306248 intron dnc + chrX 3306438 intron dnc + chrX_11_3305001 chrX_3305001 RAL-737 2232 chrX 3415020 3415047 chrX 3421205 3421232 3S18 8 6183 2.0 5.0 3.5 1.8 6212 chrX 3415020 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421232 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-737 2233 chrX 3493091 3493114 chrX 3502250 3502272 roo 4 9154 5.0 1.5 3.2 1.0 9181 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502272 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-737 2234 chrX 3513784 3513790 chrX 3513847 3513873 7 75 3.5 2.5 3.0 1.8 89 chrX 3513784 intron,intron CR44999 +,CG32791 - chrX 3513828 intron,intron CR44999 +,CG32791 - chrX 3513873 intron,intron CR44999 +,CG32791 - chrX_7_3510001 chrX_3510001 RAL-737 2235 chrX 3535406 3535426 chrX 3535497 3535517 5 91 6.5 3.5 5.0 0.8 111 chrX 3535406 intron CG32791 - chrX 3535462 intron CG32791 - chrX 3535517 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-737 2236 chrX 3597110 3597130 chrX 3597198 3597218 7 88 2.5 3.5 3.0 1.8 108 chrX 3597110 intron AstA-R1 + chrX 3597164 intron AstA-R1 + chrX 3597218 intron AstA-R1 + chrX_7_3595001 chrX_3595001 RAL-737 2237 chrX 3597550 3597581 chrX 3619718 3619749 roo 15 22165 4.0 4.5 4.2 2.9 22199 chrX 3597550 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_15_3605001 chrX_3605001 RAL-737 2238 chrX 3620472 3620490 chrX 3620571 3620589 8 99 3.0 3.5 3.2 1.9 117 chrX 3620472 intron AstA-R1 + chrX 3620530 intron AstA-R1 + chrX 3620589 intron AstA-R1 + chrX_8_3620001 chrX_3620001 RAL-737 2239 chrX 3657418 3657447 chrX 3657495 3657527 8 78 3.5 6.5 5.0 1.3 109 chrX 3657418 intron AstA-R1 + chrX 3657472 intron AstA-R1 + chrX 3657527 intron AstA-R1 + chrX_8_3655001 chrX_3655001 RAL-737 2240 chrX 3662485 3662493 chrX 3662569 3662577 5 84 11.0 4.5 7.8 0.6 92 chrX 3662485 intron AstA-R1 + chrX 3662531 intron AstA-R1 + chrX 3662577 intron AstA-R1 + chrX_5_3660001 chrX_3660001 RAL-737 2241 chrX 3685907 3685935 chrX 3686024 3686052 8 111 6.5 2.0 4.2 1.5 145 chrX 3685907 intron Mnt + chrX 3685980 intron Mnt + chrX 3686052 intron Mnt + chrX_8_3685001 chrX_3685001 RAL-737 2242 chrX 3711070 3711092 chrX 3711141 3711168 7 77 1.0 3.0 2.0 2.3 98 chrX 3711070 intron Rala - chrX 3711119 intron Rala - chrX 3711168 intron Rala - chrX_7_3710001 chrX_3710001 RAL-737 2243 chrX 3866124 3866136 chrX 3866202 3866211 6 77 3.5 4.5 4.0 1.2 87 chrX 3866124 intron yin - chrX 3866168 intron yin - chrX 3866211 intron yin - chrX_6_3865001 chrX_3865001 RAL-737 2244 chrX 3880463 3880484 chrX 3880549 3880570 7 84 2.5 2.0 2.2 2.2 107 chrX 3880463 intergenic VhaAC39-1 + chrX 3880516 intergenic VhaAC39-1 + chrX 3880570 intergenic VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-737 2245 chrX 3881270 3881304 chrX 3881409 3881443 8 137 2.0 2.5 2.2 2.5 173 chrX 3881270 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-737 2246 chrX 3930043 3930070 chrX 3930124 3930151 13 81 4.5 2.0 3.2 3.1 108 chrX 3930043 5` UTR CG42541 - chrX 3930097 5` UTR CG42541 - chrX 3930151 5` UTR CG42541 - chrX_13_3930001 chrX_3930001 RAL-737 2247 chrX 3986864 3986894 chrX 3994496 3994506 412 10 7630 2.0 3.5 2.8 2.6 7642 chrX 3986864 intergenic not near genes chrX 3990685 intergenic not near genes chrX 3994506 intergenic not near genes chrX_10_3990001 chrX_3990001 RAL-737 2248 chrX 4337921 4337934 chrX 4338044 4338047 4 119 6.5 1.5 4.0 0.8 126 chrX 4337921 intron norpA + chrX 4337984 intron norpA + chrX 4338047 intron norpA + chrX_4_4335001 chrX_4335001 RAL-737 2249 chrX 4337939 4337955 chrX 4338042 4338044 8 113 3.5 1.5 2.5 2.3 105 chrX 4337939 intron norpA + chrX 4337992 intron norpA + chrX 4338044 intron norpA + chrX_8_4335001 chrX_4335001 RAL-737 2250 chrX 4343885 4343896 chrX 4343999 4344005 5 113 1.5 4.0 2.8 1.3 120 chrX 4343885 intron norpA + chrX 4343945 intron norpA + chrX 4344005 intron norpA + chrX_5_4340001 chrX_4340001 RAL-737 2251 chrX 4344691 4344702 chrX 4345488 4345520 6 813 1.5 3.0 2.2 1.9 829 chrX 4344691 intron norpA + chrX 4345106 intron norpA + chrX 4345520 intron norpA + chrX_6_4345001 chrX_4345001 RAL-737 2252 chrX 4396979 4397009 chrX 4397064 4397089 10 84 4.5 6.5 5.5 1.5 110 chrX 4396979 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397089 intron CR32773 - chrX_10_4395001 chrX_4395001 RAL-737 2253 chrX 4436473 4436490 chrX 4436533 4436542 4 56 4.0 0.5 2.2 1.2 69 chrX 4436473 intron,intron CR32773 -,bi + chrX 4436508 intron,intron CR32773 -,bi + chrX 4436542 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-737 2254 chrX 4525347 4525361 chrX 4525429 4525434 7 90 2.5 6.0 4.2 1.3 87 chrX 4525347 intron CR32773 - chrX 4525390 intron CR32773 - chrX 4525434 intron CR32773 - chrX_7_4525001 chrX_4525001 RAL-737 2255 chrX 4660819 4660847 chrX 4660918 4660946 9 99 4.0 0.0 2.0 3.0 127 chrX 4660819 intron CG3009 - chrX 4660882 intron CG3009 - chrX 4660946 intron CG3009 - chrX_9_4660001 chrX_4660001 RAL-737 2256 chrX 4700400 4700424 chrX 4700743 4700756 jockey 9 340 2.0 6.5 4.2 1.7 356 chrX 4700400 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700756 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-737 2257 chrX 4731820 4731830 chrX 4736913 4736923 jockey 4 5093 9.0 6.0 7.5 0.5 5103 chrX 4731820 intergenic not near genes chrX 4734372 intergenic not near genes chrX 4736923 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-737 2258 chrX 4763255 4763281 chrX 4763742 4763769 Stalker4 7 486 2.5 1.5 2.0 2.3 514 chrX 4763255 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763769 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-737 2259 chrX 4792382 4792409 chrX 4792815 4792830 jockey 4 430 4.5 8.0 6.2 0.6 448 chrX 4792382 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792830 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-737 2260 chrX 4827970 4827995 chrX 4835339 4835366 Stalker4 10 7363 4.5 7.0 5.8 1.5 7396 chrX 4827970 intergenic not near genes chrX 4831668 intergenic not near genes chrX 4835366 intergenic not near genes chrX_10_4830001 chrX_4830001 RAL-737 2261 chrX 4871208 4871229 chrX 4871308 4871328 9 100 4.5 6.0 5.2 1.5 120 chrX 4871208 intron CG42594 + chrX 4871268 intron CG42594 + chrX 4871328 intron CG42594 + chrX_9_4870001 chrX_4870001 RAL-737 2262 chrX 4893272 4893288 chrX 4893350 4893364 7 85 3.0 4.0 3.5 1.6 92 chrX 4893272 intron CG42594 + chrX 4893318 intron CG42594 + chrX 4893364 intron CG42594 + chrX_7_4890001 chrX_4890001 RAL-737 2263 chrX 4965135 4965144 chrX 4965226 4965236 7 104 0.0 2.0 1.0 3.5 101 chrX 4965135 intron CR44833 - chrX 4965186 intron CR44833 - chrX 4965236 intron CR44833 - chrX_7_4965001 chrX_4965001 RAL-737 2264 chrX 4990042 4990076 chrX 4997256 4997286 roo 12 7212 5.5 6.5 6.0 1.7 7244 chrX 4990042 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997286 intron CR44833 - chrX_12_4990001 chrX_4990001 RAL-737 2265 chrX 5096275 5096301 chrX 5103839 5103866 springer 7 7564 2.5 4.0 3.2 1.7 7591 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100070 intron,intron CG15465 +,rg + chrX 5103866 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-737 2266 chrX 5134798 5134827 chrX 5134899 5134926 15 99 4.5 8.5 6.5 2.0 128 chrX 5134798 intron,intron CG15465 +,rg + chrX 5134862 intron,intron CG15465 +,rg + chrX 5134926 intron,intron CG15465 +,rg + chrX_15_5130001 chrX_5130001 RAL-737 2267 chrX 5264700 5264716 chrX 5264786 5264793 5 84 0.0 1.0 0.5 3.3 93 chrX 5264700 intergenic not near genes chrX 5264746 intergenic not near genes chrX 5264793 intergenic not near genes chrX_5_5260001 chrX_5260001 RAL-737 2268 chrX 5272839 5272850 chrX 5272925 5272934 6 86 2.0 8.5 5.2 1.0 95 chrX 5272839 intergenic not near genes chrX 5272886 intergenic not near genes chrX 5272934 intergenic not near genes chrX_6_5270001 chrX_5270001 RAL-737 2269 chrX 5289778 5289796 chrX 5290390 5290408 4 615 26.0 9.5 17.8 0.2 630 chrX 5289778 intergenic not near genes chrX 5290093 intergenic not near genes chrX 5290408 intergenic not near genes chrX_4_5290001 chrX_5290001 RAL-737 2270 chrX 5291351 5291375 chrX 5291427 5291452 6 75 3.5 6.5 5.0 1.0 101 chrX 5291351 intergenic not near genes chrX 5291402 intergenic not near genes chrX 5291452 intergenic not near genes chrX_6_5290001 chrX_5290001 RAL-737 2271 chrX 5345439 5345471 chrX 5345551 5345568 9 108 3.0 2.0 2.5 2.6 129 chrX 5345439 intron SK + chrX 5345504 intron SK + chrX 5345568 intron SK + chrX_9_5345001 chrX_5345001 RAL-737 2272 chrX 5349274 5349309 chrX 5349351 5349359 12 75 1.5 4.5 3.0 3.0 85 chrX 5349274 intron SK + chrX 5349316 intron SK + chrX 5349359 intron SK + chrX_12_5345001 chrX_5345001 RAL-737 2273 chrX 5473590 5473613 chrX 5473666 5473689 11 76 3.5 3.0 3.2 2.6 99 chrX 5473590 intron SPR + chrX 5473640 intron SPR + chrX 5473689 intron SPR + chrX_11_5470001 chrX_5470001 RAL-737 2274 chrX 5473615 5473618 chrX 5473664 5473677 4 61 2.5 3.0 2.8 1.1 62 chrX 5473615 intron SPR + chrX 5473646 intron SPR + chrX 5473677 intron SPR + chrX_4_5470001 chrX_5470001 RAL-737 2275 chrX 5494275 5494307 chrX 5494355 5494390 10 78 1.5 1.5 1.5 4.0 115 chrX 5494275 exon frma - chrX 5494332 exon frma - chrX 5494390 exon frma - chrX_10_5490001 chrX_5490001 RAL-737 2276 chrX 5501489 5501507 chrX 5501579 5501597 11 89 5.5 1.5 3.5 2.4 108 chrX 5501489 5` UTR CG4151 + chrX 5501543 5` UTR CG4151 + chrX 5501597 5` UTR CG4151 + chrX_11_5500001 chrX_5500001 RAL-737 2277 chrX 5512053 5512071 chrX 5512135 5512138 4 79 5.5 0.0 2.8 1.1 85 chrX 5512053 intergenic not near genes chrX 5512096 intergenic not near genes chrX 5512138 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-737 2278 chrX 5524845 5524870 chrX 5528707 5528733 412 13 3862 4.5 2.5 3.5 2.9 3888 chrX 5524845 intergenic snoRNA:Psi28S-3342 - chrX 5526789 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_13_5525001 chrX_5525001 RAL-737 2279 chrX 5883808 5883841 chrX 5884049 5884082 pogo 9 237 3.5 2.5 3.0 2.2 274 chrX 5883808 intron CR45668 - chrX 5883945 intron CR45668 - chrX 5884082 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-737 2280 chrX 5884170 5884192 chrX 5884408 5884433 pogo 8 240 6.5 3.5 5.0 1.3 263 chrX 5884170 intron CR45668 - chrX 5884302 intron CR45668 - chrX 5884433 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-737 2281 chrX 6003279 6003307 chrX 6003360 6003388 14 81 0.5 1.5 1.0 7.0 109 chrX 6003279 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003388 intron CR44498 + chrX_14_6000001 chrX_6000001 RAL-737 2282 chrX 6171585 6171611 chrX 6179018 6179044 Quasimodo 11 7432 8.0 5.5 6.8 1.4 7459 chrX 6171585 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179044 intron Ca-alpha1T - chrX_11_6175001 chrX_6175001 RAL-737 2283 chrX 6335218 6335227 chrX 6337728 6337737 Tirant 5 2510 0.0 6.5 3.2 1.2 2519 chrX 6335218 intergenic not near genes chrX 6336478 intergenic not near genes chrX 6337737 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-737 2284 chrX 6392870 6392893 chrX 6397633 6397658 Doc 8 4761 5.0 7.5 6.2 1.1 4788 chrX 6392870 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397658 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-737 2285 chrX 6392898 6392904 chrX 6397631 6397666 Doc 6 4754 3.0 7.5 5.2 1.0 4768 chrX 6392898 intergenic not near genes chrX 6395282 intergenic not near genes chrX 6397666 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-737 2286 chrX 6562817 6562850 chrX 6571299 6571308 Tirant 8 8476 5.0 2.5 3.8 1.7 8491 chrX 6562817 intron CG34417 + chrX 6567062 intron CG34417 + chrX 6571308 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-737 2287 chrX 6605479 6605500 chrX 6608501 6608517 Burdock 10 3022 4.0 4.5 4.2 1.9 3038 chrX 6605479 intron pigs + chrX 6606998 intron pigs + chrX 6608517 intron pigs + chrX_10_6605001 chrX_6605001 RAL-737 2288 chrX 6737520 6737544 chrX 6737602 6737603 5 75 6.0 4.0 5.0 0.8 83 chrX 6737520 intron CG3168 - chrX 6737562 intron CG3168 - chrX 6737603 intron CG3168 - chrX_5_6735001 chrX_6735001 RAL-737 2289 chrX 6897575 6897581 chrX 7243771 7243775 4 346196 7.5 1.0 4.2 0.8 346200 chrX 6897575 intergenic not near genes chrX 7070675 exon CG4607 + chrX 7243775 intron CR44357 - chrX_4_7070001 chrX_7070001 RAL-737 2290 chrX 6989502 6989533 chrX 6989588 6989620 6 78 3.5 2.5 3.0 1.5 118 chrX 6989502 intron ogre - chrX 6989561 intron ogre - chrX 6989620 intron ogre - chrX_6_6985001 chrX_6985001 RAL-737 2291 chrX 7023604 7023631 chrX 7030994 7031021 Tabor 8 7388 7.5 5.5 6.5 1.1 7417 chrX 7023604 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031021 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-737 2292 chrX 7048628 7048646 chrX 7048706 7048719 4 76 7.0 1.0 4.0 0.8 91 chrX 7048628 intron CG12541 - chrX 7048674 intron CG12541 - chrX 7048719 intron CG12541 - chrX_4_7045001 chrX_7045001 RAL-737 2293 chrX 7125245 7125279 chrX 7134404 7134438 roo 11 9158 3.0 7.0 5.0 1.8 9193 chrX 7125245 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134438 intergenic not near genes chrX_11_7125001 chrX_7125001 RAL-737 2294 chrX 7189557 7189587 chrX 7189663 7189666 4 94 5.0 1.5 3.2 1.0 109 chrX 7189557 intron,intron CG9650 +,CR44357 - chrX 7189612 intron,intron CG9650 +,CR44357 - chrX 7189666 intron,intron CG9650 +,CR44357 - chrX_4_7185001 chrX_7185001 RAL-737 2295 chrX 7409523 7409547 chrX 7409604 7409615 4 78 3.5 5.0 4.2 0.8 92 chrX 7409523 intergenic not near genes chrX 7409569 intergenic not near genes chrX 7409615 intergenic not near genes chrX_4_7405001 chrX_7405001 RAL-737 2296 chrX 7702900 7702939 chrX 7703339 7703366 jockey 17 434 5.5 7.5 6.5 2.3 466 chrX 7702900 intron CHES-1-like - chrX 7703133 intron CHES-1-like - chrX 7703366 intron CHES-1-like - chrX_17_7700001 chrX_7700001 RAL-737 2297 chrX 7737171 7737179 chrX 7737253 7737261 5 82 3.0 10.5 6.8 0.6 90 chrX 7737171 intron Tom40 + chrX 7737216 intron Tom40 + chrX 7737261 intron Tom40 + chrX_5_7735001 chrX_7735001 RAL-737 2298 chrX 7752928 7752960 chrX 7753005 7753036 11 73 3.5 3.5 3.5 2.4 108 chrX 7752928 intergenic not near genes chrX 7752982 intergenic not near genes chrX 7753036 intergenic not near genes chrX_11_7750001 chrX_7750001 RAL-737 2299 chrX 7780033 7780060 chrX 7780325 7780353 11 292 6.5 0.5 3.5 2.4 320 chrX 7780033 intergenic not near genes chrX 7780193 intergenic not near genes chrX 7780353 intergenic not near genes chrX_11_7780001 chrX_7780001 RAL-737 2300 chrX 7832433 7832465 chrX 7832522 7832554 13 87 3.0 2.0 2.5 3.7 121 chrX 7832433 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832554 intron CG1402 + chrX_13_7830001 chrX_7830001 RAL-737 2301 chrX 7845726 7845753 chrX 7847217 7847228 hopper2 9 1489 4.0 3.5 3.8 1.9 1502 chrX 7845726 intergenic not near genes chrX 7846477 intergenic not near genes chrX 7847228 intergenic not near genes chrX_9_7845001 chrX_7845001 RAL-737 2302 chrX 8031427 8031460 chrX 8035736 8035769 Juan 14 4308 5.0 4.0 4.5 2.5 4342 chrX 8031427 intergenic not near genes chrX 8033598 intergenic not near genes chrX 8035769 3` UTR CG2233 - chrX_14_8030001 chrX_8030001 RAL-737 2303 chrX 8085573 8085603 chrX 8085659 8085680 16 85 5.0 3.0 4.0 3.2 107 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085626 intron,5` UTR CG2256 -,CR45535 + chrX 8085680 intron,5` UTR CG2256 -,CR45535 + chrX_16_8085001 chrX_8085001 RAL-737 2304 chrX 8092287 8092322 chrX 8092372 8092407 13 83 2.5 6.0 4.2 2.5 120 chrX 8092287 intron Ubc-E2H - chrX 8092347 intron Ubc-E2H - chrX 8092407 intron Ubc-E2H - chrX_13_8090001 chrX_8090001 RAL-737 2305 chrX 8364847 8364853 chrX 8365244 8365249 BS 4 396 7.5 0.5 4.0 0.8 402 chrX 8364847 intron nAChRalpha3 - chrX 8365048 intron nAChRalpha3 - chrX 8365249 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-737 2306 chrX 8364854 8364883 chrX 8365235 8365297 BS 7 404 3.5 0.5 2.0 2.3 443 chrX 8364854 intron nAChRalpha3 - chrX 8365076 intron nAChRalpha3 - chrX 8365297 intron nAChRalpha3 - chrX_7_8365001 chrX_8365001 RAL-737 2307 chrX 8421467 8421490 chrX 8421559 8421580 10 91 4.5 6.5 5.5 1.5 113 chrX 8421467 intron Trf2 + chrX 8421524 intron Trf2 + chrX 8421580 intron Trf2 + chrX_10_8420001 chrX_8420001 RAL-737 2308 chrX 8456818 8456832 chrX 8465647 8465661 5 8829 2.0 0.5 1.2 2.3 8843 chrX 8456818 intergenic CG32713 - chrX 8461240 intergenic Es2 +,CG15347 - chrX 8465661 intergenic CG33223 - chrX_5_8460001 chrX_8460001 RAL-737 2309 chrX 8533960 8533988 chrX 8534040 8534042 12 76 5.0 6.0 5.5 1.8 82 chrX 8533960 intron Nrg + chrX 8534001 intron Nrg + chrX 8534042 intron Nrg + chrX_12_8530001 chrX_8530001 RAL-737 2310 chrX 8662370 8662380 chrX 8662586 8662597 5 217 4.0 2.0 3.0 1.2 227 chrX 8662370 intergenic not near genes chrX 8662484 intergenic not near genes chrX 8662597 intergenic not near genes chrX_5_8660001 chrX_8660001 RAL-737 2311 chrX 8730459 8730473 chrX 8730512 8730515 6 56 0.0 2.5 1.2 2.7 56 chrX 8730459 intergenic not near genes chrX 8730487 intergenic not near genes chrX 8730515 intergenic not near genes chrX_6_8730001 chrX_8730001 RAL-737 2312 chrX 8860780 8860797 chrX 8860863 8860864 7 81 0.0 3.5 1.8 2.5 84 chrX 8860780 intron CG12075 + chrX 8860822 intron CG12075 + chrX 8860864 intron CG12075 + chrX_7_8860001 chrX_8860001 RAL-737 2313 chrX 8879765 8879773 chrX 8879846 8879853 6 80 0.0 0.0 0.0 6.0 88 chrX 8879765 intron Moe - chrX 8879809 intron Moe - chrX 8879853 intron Moe - chrX_6_8875001 chrX_8875001 RAL-737 2314 chrX 8922328 8922332 chrX 8922762 8922766 jockey 4 434 10.0 5.5 7.8 0.5 438 chrX 8922328 intron rdgA + chrX 8922547 intron rdgA + chrX 8922766 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-737 2315 chrX 8922334 8922363 chrX 8922759 8922768 jockey 10 419 4.0 5.5 4.8 1.7 434 chrX 8922334 intron rdgA + chrX 8922551 intron rdgA + chrX 8922768 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-737 2316 chrX 8927585 8927617 chrX 8929851 8929887 NOF 7 2267 7.5 4.5 6.0 1.0 2302 chrX 8927585 intron rdgA + chrX 8928736 intron rdgA + chrX 8929887 intron rdgA + chrX_7_8925001 chrX_8925001 RAL-737 2317 chrX 8938524 8938524 chrX 20889085 20889085 4 11950561 12.0 22.0 17.0 0.2 11950561 chrX 8938524 intron rdgA + chrX 14913804 intron,5` UTR Flo2 +,CG12398 - chrX 20889085 intron shakB - chrX_4_14910001 chrX_14910001 RAL-737 2318 chrX 8948762 8948791 chrX 8956272 8956301 roo 4 7510 1.5 3.0 2.2 1.2 7539 chrX 8948762 intron rdgA + chrX 8952532 intron rdgA + chrX 8956301 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-737 2319 chrX 8971883 8971919 chrX 8971962 8971970 7 70 3.5 3.0 3.2 1.7 87 chrX 8971883 intron rdgA + chrX 8971926 intron rdgA + chrX 8971970 intron rdgA + chrX_7_8970001 chrX_8970001 RAL-737 2320 chrX 8979996 8980028 chrX 8980077 8980083 8 78 3.0 0.0 1.5 3.2 87 chrX 8979996 intron,intron rdgA +,CR43836 - chrX 8980040 intron,intron rdgA +,CR43836 - chrX 8980083 intron,intron rdgA +,CR43836 - chrX_8_8980001 chrX_8980001 RAL-737 2321 chrX 9129480 9129513 chrX 9129566 9129571 9 74 2.5 5.5 4.0 1.8 91 chrX 9129480 intron fend - chrX 9129526 intron fend - chrX 9129571 intron fend - chrX_9_9125001 chrX_9125001 RAL-737 2322 chrX 9184339 9184350 chrX 9184507 9184512 5 166 3.0 0.5 1.8 1.8 173 chrX 9184339 3` UTR mei-P26 + chrX 9184426 3` UTR mei-P26 + chrX 9184512 3` UTR mei-P26 + chrX_5_9180001 chrX_9180001 RAL-737 2323 chrX 9224929 9224959 chrX 9225058 9225088 12 129 0.0 4.5 2.2 3.8 159 chrX 9224929 intergenic not near genes chrX 9225008 intergenic CG15370 + chrX 9225088 intergenic CG15370 + chrX_12_9225001 chrX_9225001 RAL-737 2324 chrX 9337959 9337971 chrX 9338036 9338062 5 89 2.0 6.0 4.0 1.0 103 chrX 9337959 intron CG34449 - chrX 9338010 intron CG34449 - chrX 9338062 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-737 2325 chrX 9391571 9391594 chrX 9391717 9391740 10 144 7.0 2.0 4.5 1.8 169 chrX 9391571 intron mgl - chrX 9391656 intron mgl - chrX 9391740 intron mgl - chrX_10_9390001 chrX_9390001 RAL-737 2326 chrX 9414467 9414475 chrX 9414528 9414558 4 70 2.5 3.5 3.0 1.0 91 chrX 9414467 intron mgl - chrX 9414512 intron mgl - chrX 9414558 intron mgl - chrX_4_9410001 chrX_9410001 RAL-737 2327 chrX 9469297 9469318 chrX 9469766 9469787 11 468 5.0 6.0 5.5 1.7 490 chrX 9469297 intron mgl - chrX 9469542 intron mgl - chrX 9469787 intron mgl - chrX_11_9465001 chrX_9465001 RAL-737 2328 chrX 9508140 9508165 chrX 9509658 9509683 jockey 8 1517 4.5 4.5 4.5 1.5 1543 chrX 9508140 intron CG32700 - chrX 9508912 intron CG32700 - chrX 9509683 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-737 2329 chrX 9543405 9543422 chrX 9543484 9543486 5 74 4.5 3.5 4.0 1.0 81 chrX 9543405 intron CG32700 - chrX 9543446 intron CG32700 - chrX 9543486 intron CG32700 - chrX_5_9540001 chrX_9540001 RAL-737 2330 chrX 9575797 9575821 chrX 9576120 9576145 mdg3 11 323 3.0 8.5 5.8 1.6 348 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_11_9575001 chrX_9575001 RAL-737 2331 chrX 9617006 9617019 chrX 9617085 9617090 4 76 5.5 0.0 2.8 1.1 84 chrX 9617006 intron CG42797 + chrX 9617048 intron CG42797 + chrX 9617090 intron CG42797 + chrX_4_9615001 chrX_9615001 RAL-737 2332 chrX 9632039 9632072 chrX 9632209 9632242 6 169 2.0 0.0 1.0 3.0 203 chrX 9632039 intron l(1)G0232 - chrX 9632140 intron l(1)G0232 - chrX 9632242 intron l(1)G0232 - chrX_6_9630001 chrX_9630001 RAL-737 2333 chrX 9668724 9668749 chrX 9668802 9668808 6 74 1.5 4.5 3.0 1.5 84 chrX 9668724 3` UTR nej - chrX 9668766 3` UTR nej - chrX 9668808 3` UTR nej - chrX_6_9665001 chrX_9665001 RAL-737 2334 chrX 9758048 9758067 chrX 9758133 9758152 5 85 1.5 1.0 1.2 2.3 104 chrX 9758048 intergenic not near genes chrX 9758100 intergenic not near genes chrX 9758152 intergenic not near genes chrX_5_9755001 chrX_9755001 RAL-737 2335 chrX 9839369 9839376 chrX 9839451 9839457 5 82 0.5 5.0 2.8 1.3 88 chrX 9839369 intron CG32698 + chrX 9839413 intron CG32698 + chrX 9839457 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-737 2336 chrX 10134005 10134034 chrX 10134089 10134093 6 78 2.0 3.0 2.5 1.7 88 chrX 10134005 exon,intron RhoU +,CR44894 - chrX 10134049 exon,intron RhoU +,CR44894 - chrX 10134093 exon,intron RhoU +,CR44894 - chrX_6_10130001 chrX_10130001 RAL-737 2337 chrX 10138218 10138246 chrX 10145722 10145750 412 6 7502 3.0 4.5 3.8 1.2 7532 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145750 intron,intron RhoU +,CR44894 - chrX_6_10140001 chrX_10140001 RAL-737 2338 chrX 10154285 10154312 chrX 10154361 10154388 8 75 1.0 4.0 2.5 2.3 103 chrX 10154285 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154388 intron,exon CR44894 -,CG12645 + chrX_8_10150001 chrX_10150001 RAL-737 2339 chrX 10196190 10196204 chrX 10196299 10196313 4 107 7.5 2.0 4.8 0.7 123 chrX 10196190 intron CR44894 - chrX 10196252 intron CR44894 - chrX 10196313 intron CR44894 - chrX_4_10195001 chrX_10195001 RAL-737 2340 chrX 10199153 10199167 chrX 10199223 10199246 6 74 1.5 5.0 3.2 1.4 93 chrX 10199153 intron CR44894 - chrX 10199200 intron CR44894 - chrX 10199246 intron CR44894 - chrX_6_10195001 chrX_10195001 RAL-737 2341 chrX 10267300 10267331 chrX 10276450 10276481 roo 5 9148 2.5 0.5 1.5 2.0 9181 chrX 10267300 3` UTR alpha-Man-I - chrX 10271890 intron alpha-Man-I - chrX 10276481 3` UTR alpha-Man-I - chrX_5_10270001 chrX_10270001 RAL-737 2342 chrX 10317557 10317580 chrX 10317635 10317658 13 78 1.0 2.0 1.5 5.2 101 chrX 10317557 intron alpha-Man-I - chrX 10317608 intron alpha-Man-I - chrX 10317658 intron alpha-Man-I - chrX_13_10315001 chrX_10315001 RAL-737 2343 chrX 10367192 10367208 chrX 10367297 10367309 6 107 2.0 3.0 2.5 1.7 117 chrX 10367192 exon CG32679 - chrX 10367250 intron CG32679 - chrX 10367309 intron CG32679 - chrX_6_10365001 chrX_10365001 RAL-737 2344 chrX 10550337 10550365 chrX 10550415 10550443 12 78 4.0 4.0 4.0 2.4 106 chrX 10550337 intron spri - chrX 10550390 intron spri - chrX 10550443 intron spri - chrX_12_10550001 chrX_10550001 RAL-737 2345 chrX 10550855 10550882 chrX 10552317 10552347 hobo 8 1458 2.0 1.5 1.8 2.9 1492 chrX 10550855 intron spri - chrX 10551601 intron spri - chrX 10552347 intron spri - chrX_8_10550001 chrX_10550001 RAL-737 2346 chrX 10609377 10609392 chrX 10609485 10609500 4 108 17.0 26.5 21.8 0.2 123 chrX 10609377 intron CG43347 - chrX 10609438 intron CG43347 - chrX 10609500 intron CG43347 - chrX_4_10605001 chrX_10605001 RAL-737 2347 chrX 10686048 10686082 chrX 10691185 10691219 roo 14 5136 3.0 6.0 4.5 2.5 5171 chrX 10686048 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_14_10685001 chrX_10685001 RAL-737 2348 chrX 10694161 10694177 chrX 10694232 10694237 7 72 6.0 7.5 6.8 0.9 76 chrX 10694161 intron X11Lbeta + chrX 10694199 intron X11Lbeta + chrX 10694237 intron X11Lbeta + chrX_7_10690001 chrX_10690001 RAL-737 2349 chrX 10694178 10694185 chrX 10694230 10694240 8 64 3.5 6.0 4.8 1.4 62 chrX 10694178 intron X11Lbeta + chrX 10694209 intron X11Lbeta + chrX 10694240 intron X11Lbeta + chrX_8_10690001 chrX_10690001 RAL-737 2350 chrX 10719129 10719150 chrX 10719213 10719234 9 82 0.0 5.0 2.5 2.6 105 chrX 10719129 intron CG32676 - chrX 10719182 intron CG32676 - chrX 10719234 intron CG32676 - chrX_9_10715001 chrX_10715001 RAL-737 2351 chrX 10730152 10730166 chrX 10730285 10730309 6 140 3.5 1.5 2.5 1.7 157 chrX 10730152 intron CG32676 - chrX 10730230 intron CG32676 - chrX 10730309 intron CG32676 - chrX_6_10730001 chrX_10730001 RAL-737 2352 chrX 10803040 10803048 chrX 10803119 10803127 4 78 10.0 9.5 9.8 0.4 87 chrX 10803040 intron Imp - chrX 10803084 intron Imp - chrX 10803127 intron Imp - chrX_4_10800001 chrX_10800001 RAL-737 2353 chrX 10920667 10920681 chrX 10920758 10920772 5 91 4.5 0.0 2.2 1.6 105 chrX 10920667 3` UTR CG43901 + chrX 10920720 3` UTR CG43901 + chrX 10920772 3` UTR CG43901 + chrX_5_10920001 chrX_10920001 RAL-737 2354 chrX 11034300 11034323 chrX 11034620 11034653 5 328 1.5 3.0 2.2 1.6 353 chrX 11034300 intron CG42339 - chrX 11034476 intron CG42339 - chrX 11034653 intron CG42339 - chrX_5_11030001 chrX_11030001 RAL-737 2355 chrX 11096000 11096030 chrX 11103102 11103132 HMS-Beagle 9 7096 1.5 3.0 2.2 2.8 7132 chrX 11096000 intergenic not near genes chrX 11099566 intergenic not near genes chrX 11103132 intron CG42249 + chrX_9_11095001 chrX_11095001 RAL-737 2356 chrX 11184251 11184280 chrX 11189326 11189356 flea 6 5072 2.5 3.5 3.0 1.5 5105 chrX 11184251 intergenic not near genes chrX 11186804 intergenic not near genes chrX 11189356 intergenic not near genes chrX_6_11185001 chrX_11185001 RAL-737 2357 chrX 11265343 11265364 chrX 11265770 11265791 6 424 5.0 6.5 5.8 0.9 448 chrX 11265343 intron CG44422 - chrX 11265567 intron CG44422 - chrX 11265791 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-737 2358 chrX 11268564 11268595 chrX 11270053 11270085 hopper2 5 1487 5.5 5.5 5.5 0.8 1521 chrX 11268564 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270085 intron CG44422 - chrX_5_11265001 chrX_11265001 RAL-737 2359 chrX 11379765 11379791 chrX 11379910 11379936 10 143 4.0 7.5 5.8 1.5 171 chrX 11379765 intron dlg1 + chrX 11379850 intron dlg1 + chrX 11379936 intron dlg1 + chrX_10_11375001 chrX_11375001 RAL-737 2360 chrX 11431606 11431628 chrX 11431693 11431715 6 86 0.0 7.0 3.5 1.3 109 chrX 11431606 3` UTR Evi5 - chrX 11431660 3` UTR Evi5 - chrX 11431715 3` UTR Evi5 - chrX_6_11430001 chrX_11430001 RAL-737 2361 chrX 11426636 11426664 chrX 11432801 11432831 12 6167 30.5 35.5 33.0 0.4 6195 chrX 11426636 intron Gs2 + chrX 11429734 3` UTR Gs2 + chrX 11432831 3` UTR Evi5 - chrX_12_11425001 chrX_11425001 RAL-737 2362 chrX 11451255 11451280 chrX 11451608 11451633 9 349 5.5 4.0 4.8 1.6 378 chrX 11451255 intron Evi5 - chrX 11451444 intron Evi5 - chrX 11451633 intron Evi5 - chrX_9_11450001 chrX_11450001 RAL-737 2363 chrX 11633421 11633443 chrX 11640475 11640497 297 15 7054 5.0 8.5 6.8 1.9 7076 chrX 11633421 intron Ptp10D + chrX 11636959 intron Ptp10D + chrX 11640497 intron Ptp10D + chrX_15_11635001 chrX_11635001 RAL-737 2364 chrX 11661793 11661812 chrX 11661901 11661920 6 107 2.0 3.5 2.8 1.6 127 chrX 11661793 intron Ptp10D + chrX 11661856 intron Ptp10D + chrX 11661920 intron Ptp10D + chrX_6_11660001 chrX_11660001 RAL-737 2365 chrX 11799018 11799034 chrX 11799104 11799120 5 86 3.5 4.0 3.8 1.0 102 chrX 11799018 intron CkIIbeta + chrX 11799069 intron CkIIbeta + chrX 11799120 intron CkIIbeta + chrX_5_11795001 chrX_11795001 RAL-737 2366 chrX 11839045 11839052 chrX 11839288 11839296 6 246 2.5 7.5 5.0 1.0 251 chrX 11839045 intergenic not near genes chrX 11839170 intergenic Cyp28c1 + chrX 11839296 intergenic Cyp28c1 + chrX_6_11835001 chrX_11835001 RAL-737 2367 chrX 11839054 11839066 chrX 11839283 11839314 6 238 1.0 5.5 3.2 1.4 260 chrX 11839054 intergenic not near genes chrX 11839184 intergenic Cyp28c1 + chrX 11839314 intergenic Cyp28c1 + chrX_6_11835001 chrX_11835001 RAL-737 2368 chrX 11922363 11922382 chrX 11922496 11922496 7 130 4.0 3.0 3.5 1.6 133 chrX 11922363 exon Sclp - chrX 11922430 intron Sclp - chrX 11922496 intron Sclp - chrX_7_11920001 chrX_11920001 RAL-737 2369 chrX 12168143 12168166 chrX 12173574 12173608 I-element 5 5438 3.0 2.5 2.8 1.3 5465 chrX 12168143 intron Ten-a + chrX 12170876 intron Ten-a + chrX 12173608 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-737 2370 chrX 12198973 12198984 chrX 12199038 12199063 5 74 2.5 9.5 6.0 0.7 90 chrX 12198973 intron Ten-a + chrX 12199018 intron Ten-a + chrX 12199063 intron Ten-a + chrX_5_12195001 chrX_12195001 RAL-737 2371 chrX 12270165 12270197 chrX 12270249 12270281 10 82 4.0 2.5 3.2 2.4 116 chrX 12270165 intron Ten-a + chrX 12270223 intron Ten-a + chrX 12270281 intron Ten-a + chrX_10_12270001 chrX_12270001 RAL-737 2372 chrX 12350775 12350806 chrX 12350854 12350887 7 81 1.5 0.0 0.8 3.9 112 chrX 12350775 intergenic not near genes chrX 12350831 intergenic not near genes chrX 12350887 intergenic not near genes chrX_7_12350001 chrX_12350001 RAL-737 2373 chrX 12430954 12430963 chrX 12431026 12431041 4 76 4.0 4.0 4.0 0.8 87 chrX 12430954 intergenic not near genes chrX 12430998 intergenic not near genes chrX 12431041 intergenic not near genes chrX_4_12430001 chrX_12430001 RAL-737 2374 chrX 12511325 12511346 chrX 12511409 12511430 6 84 0.0 3.0 1.5 2.4 105 chrX 12511325 intron CG2556 + chrX 12511378 intron CG2556 + chrX 12511430 intron CG2556 + chrX_6_12510001 chrX_12510001 RAL-737 2375 chrX 12537289 12537570 chrX 12537386 12537646 8 81 0.0 0.0 0.0 8.0 357 chrX 12537289 intron CG43921 - chrX 12537468 intron CG43921 - chrX 12537646 intron CG43921 - chrX_8_12535001 chrX_12535001 RAL-737 2376 chrX 12785426 12785457 chrX 12785503 12785534 7 77 2.5 5.0 3.8 1.5 108 chrX 12785426 intergenic Pde9 -,CG32647 - chrX 12785480 intergenic Pde9 - chrX 12785534 intergenic Pde9 - chrX_7_12785001 chrX_12785001 RAL-737 2377 chrX 11109417 11109417 chrX 12946233 12946233 4 1836816 13.0 17.0 15.0 0.2 1836816 chrX 11109417 intron Hsp60 + chrX 12027825 exon Usp7 - chrX 12946233 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-737 2378 chrX 11109417 11109417 chrX 12946234 12946234 6 1836817 13.0 17.0 15.0 0.4 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-737 2379 chrX 12946235 12946235 chrX 18572525 18572526 4 5626291 20.0 11.5 15.8 0.2 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-737 2380 chrX 12960764 12960798 chrX 12960845 12960879 12 80 3.5 1.5 2.5 3.4 115 chrX 12960764 3` UTR CG32642 + chrX 12960822 intergenic CG32642 + chrX 12960879 intergenic CG32642 + chrX_12_12960001 chrX_12960001 RAL-737 2381 chrX 13146601 13146630 chrX 13146689 13146718 13 83 3.0 6.5 4.8 2.2 117 chrX 13146601 intron CG32645 + chrX 13146660 intron CG32645 + chrX 13146718 intron CG32645 + chrX_13_13145001 chrX_13145001 RAL-737 2382 chrX 13172357 13172383 chrX 13172433 13172459 16 72 5.0 4.5 4.8 2.8 102 chrX 13172357 exon CG34411 - chrX 13172408 intron CG34411 - chrX 13172459 intron CG34411 - chrX_16_13170001 chrX_13170001 RAL-737 2383 chrX 13236883 13236901 chrX 13236968 13236981 6 83 0.5 7.0 3.8 1.2 98 chrX 13236883 intron mew - chrX 13236932 intron mew - chrX 13236981 intron mew - chrX_6_13235001 chrX_13235001 RAL-737 2384 chrX 13253679 13253680 chrX 13253821 13253834 4 143 24.0 16.5 20.2 0.2 155 chrX 13253679 intron mew - chrX 13253756 intron mew - chrX 13253834 intron mew - chrX_4_13250001 chrX_13250001 RAL-737 2385 chrX 13253674 13253706 chrX 13253837 13253844 5 146 34.0 14.0 24.0 0.2 170 chrX 13253674 intron mew - chrX 13253759 intron mew - chrX 13253844 intron mew - chrX_5_13250001 chrX_13250001 RAL-737 2386 chrX 13278152 13278183 chrX 13278233 13278266 8 80 7.0 0.0 3.5 1.8 114 chrX 13278152 intron HDAC4 - chrX 13278209 intron HDAC4 - chrX 13278266 intron HDAC4 - chrX_8_13275001 chrX_13275001 RAL-737 2387 chrX 13374849 13374866 chrX 13374929 13374946 6 80 4.5 3.0 3.8 1.2 97 chrX 13374849 intron CG1640 + chrX 13374898 intron CG1640 + chrX 13374946 intron CG1640 + chrX_6_13370001 chrX_13370001 RAL-737 2388 chrX 13429461 13429490 chrX 13430610 13430638 jockey 10 1146 9.0 5.5 7.2 1.2 1177 chrX 13429461 intergenic not near genes chrX 13430050 intergenic not near genes chrX 13430638 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-737 2389 chrX 13463644 13463678 chrX 13469220 13469245 mdg3 14 5575 3.5 5.5 4.5 2.5 5601 chrX 13463644 intron Neto + chrX 13466444 intron Neto + chrX 13469245 intron Neto + chrX_14_13465001 chrX_13465001 RAL-737 2390 chrX 13632162 13632187 chrX 13632432 13632457 8 269 2.5 4.5 3.5 1.8 295 chrX 13632162 intron NFAT + chrX 13632310 intron NFAT + chrX 13632457 intron NFAT + chrX_8_13630001 chrX_13630001 RAL-737 2391 chrX 13843389 13843409 chrX 13843542 13843562 5 152 3.5 5.5 4.5 0.9 173 chrX 13843389 intron AMPdeam - chrX 13843476 intron AMPdeam - chrX 13843562 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-737 2392 chrX 13975886 13975900 chrX 13975951 13975959 4 69 0.0 4.0 2.0 1.3 73 chrX 13975886 intron mamo - chrX 13975922 intron mamo - chrX 13975959 intron mamo - chrX_4_13975001 chrX_13975001 RAL-737 2393 chrX 14064148 14064172 chrX 14064244 14064269 4 97 0.0 1.0 0.5 2.7 121 chrX 14064148 intergenic not near genes chrX 14064208 intergenic not near genes chrX 14064269 intergenic not near genes chrX_4_14060001 chrX_14060001 RAL-737 2394 chrX 14131505 14131522 chrX 14131575 14131602 4 72 1.5 3.5 2.5 1.1 97 chrX 14131505 intergenic not near genes chrX 14131554 intergenic not near genes chrX 14131602 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-737 2395 chrX 14157596 14157619 chrX 14163251 14163276 297 11 5656 4.0 1.5 2.8 2.9 5680 chrX 14157596 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163276 intergenic not near genes chrX_11_14160001 chrX_14160001 RAL-737 2396 chrX 14395126 14395134 chrX 14395212 14395227 4 94 1.0 4.5 2.8 1.1 101 chrX 14395126 intron dpr8 + chrX 14395176 intron dpr8 + chrX 14395227 intron dpr8 + chrX_4_14395001 chrX_14395001 RAL-737 2397 chrX 14405018 14405022 chrX 14405096 14405099 4 78 5.0 2.0 3.5 0.9 81 chrX 14405018 intron dpr8 + chrX 14405058 intron dpr8 + chrX 14405099 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-737 2398 chrX 14407267 14407299 chrX 14407349 14407381 5 82 2.5 3.0 2.8 1.3 114 chrX 14407267 intron dpr8 + chrX 14407324 intron dpr8 + chrX 14407381 intron dpr8 + chrX_5_14405001 chrX_14405001 RAL-737 2399 chrX 14416307 14416339 chrX 14421074 14421087 F-element 9 4765 1.5 3.5 2.5 2.6 4780 chrX 14416307 intron dpr8 + chrX 14418697 intron dpr8 + chrX 14421087 intron dpr8 + chrX_9_14415001 chrX_14415001 RAL-737 2400 chrX 14484972 14484984 chrX 14485061 14485073 5 89 0.0 6.0 3.0 1.2 101 chrX 14484972 intergenic not near genes chrX 14485022 intergenic not near genes chrX 14485073 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-737 2401 chrX 14497137 14497154 chrX 14498416 14498434 4 1279 2.5 1.5 2.0 1.3 1297 chrX 14497137 3` UTR CG12540 + chrX 14497786 intergenic not near genes chrX 14498434 intergenic not near genes chrX_4_14495001 chrX_14495001 RAL-737 2402 chrX 14560269 14560298 chrX 14560353 14560381 10 83 2.5 2.5 2.5 2.9 112 chrX 14560269 intergenic not near genes chrX 14560325 intergenic not near genes chrX 14560381 intergenic not near genes chrX_10_14560001 chrX_14560001 RAL-737 2403 chrX 14634744 14634771 chrX 14634832 14634859 6 86 1.5 0.5 1.0 3.0 115 chrX 14634744 intron NetA - chrX 14634802 intron NetA - chrX 14634859 intron NetA - chrX_6_14630001 chrX_14630001 RAL-737 2404 chrX 14636462 14636484 chrX 14641903 14641924 I-element 7 5441 5.5 4.0 4.8 1.2 5462 chrX 14636462 intron NetA - chrX 14639193 intron NetA - chrX 14641924 intron NetA - chrX_7_14635001 chrX_14635001 RAL-737 2405 chrX 14714046 14714062 chrX 14714128 14714143 7 82 5.0 7.0 6.0 1.0 97 chrX 14714046 intron NetB - chrX 14714094 intron NetB - chrX 14714143 intron NetB - chrX_7_14710001 chrX_14710001 RAL-737 2406 chrX 14767957 14767975 chrX 14768037 14768055 6 80 3.0 0.0 1.5 2.4 98 chrX 14767957 intergenic not near genes chrX 14768006 intergenic not near genes chrX 14768055 intergenic not near genes chrX_6_14765001 chrX_14765001 RAL-737 2407 chrX 14778026 14778061 chrX 14782823 14782851 Doc 11 4796 8.0 4.0 6.0 1.6 4825 chrX 14778026 intergenic CG5347 + chrX 14780438 intergenic not near genes chrX 14782851 intergenic Ag5r2 - chrX_11_14780001 chrX_14780001 RAL-737 2408 chrX 14806764 14806790 chrX 14806852 14806878 11 88 1.0 0.0 0.5 7.3 114 chrX 14806764 intron rut - chrX 14806821 intron rut - chrX 14806878 intron rut - chrX_11_14805001 chrX_14805001 RAL-737 2409 chrX 14818762 14818794 chrX 14823966 14823988 copia 8 5200 3.5 3.0 3.2 1.9 5226 chrX 14818762 intron rut - chrX 14821375 intron rut - chrX 14823988 intron rut - chrX_8_14820001 chrX_14820001 RAL-737 2410 chrX 14936857 14936888 chrX 14946114 14946145 roo 11 9257 8.0 4.0 6.0 1.6 9288 chrX 14936857 intron pdgy - chrX 14941501 intron pdgy - chrX 14946145 intron pdgy - chrX_11_14940001 chrX_14940001 RAL-737 2411 chrX 14981730 14981739 chrX 14981809 14981818 4 79 2.0 1.5 1.8 1.4 88 chrX 14981730 intron eag + chrX 14981774 intron eag + chrX 14981818 intron eag + chrX_4_14980001 chrX_14980001 RAL-737 2412 chrX 14991779 14991799 chrX 14991857 14991877 9 78 9.5 7.5 8.5 0.9 98 chrX 14991779 intron eag + chrX 14991828 intron eag + chrX 14991877 intron eag + chrX_9_14990001 chrX_14990001 RAL-737 2413 chrX 14991801 14991806 chrX 14991853 14991856 6 60 5.5 4.0 4.8 1.0 55 chrX 14991801 intron eag + chrX 14991828 intron eag + chrX 14991856 intron eag + chrX_6_14990001 chrX_14990001 RAL-737 2414 chrX 15209276 15209280 chrX 15209366 15209370 5 90 0.0 6.0 3.0 1.2 94 chrX 15209276 intergenic not near genes chrX 15209323 intergenic not near genes chrX 15209370 intergenic not near genes chrX_5_15205001 chrX_15205001 RAL-737 2415 chrX 15248270 15248295 chrX 15248346 15248370 7 76 1.5 3.0 2.2 2.2 100 chrX 15248270 intergenic not near genes chrX 15248320 intergenic not near genes chrX 15248370 intergenic not near genes chrX_7_15245001 chrX_15245001 RAL-737 2416 chrX 15358307 15358342 chrX 15358395 15358429 12 87 3.0 4.0 3.5 2.7 122 chrX 15358307 intron acj6 - chrX 15358368 intron acj6 - chrX 15358429 intron acj6 - chrX_12_15355001 chrX_15355001 RAL-737 2417 chrX 15409667 15409678 chrX 15409746 15409757 9 79 5.0 6.5 5.8 1.3 90 chrX 15409667 intron Cngl - chrX 15409712 intron Cngl - chrX 15409757 intron Cngl - chrX_9_15405001 chrX_15405001 RAL-737 2418 chrX 15413051 15413065 chrX 15417353 15417357 Juan 5 4300 12.0 8.0 10.0 0.5 4306 chrX 15413051 intron Cngl - chrX 15415204 intron Cngl - chrX 15417357 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-737 2419 chrX 15413068 15413081 chrX 15417349 15417360 Juan 6 4288 5.0 6.0 5.5 0.9 4292 chrX 15413068 intron Cngl - chrX 15415214 intron Cngl - chrX 15417360 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-737 2420 chrX 15426185 15426198 chrX 15426281 15426294 4 96 2.5 3.5 3.0 1.0 109 chrX 15426185 intron Cngl - chrX 15426240 intron Cngl - chrX 15426294 intron Cngl - chrX_4_15425001 chrX_15425001 RAL-737 2421 chrX 15429233 15429263 chrX 15429315 15429345 13 79 3.0 2.0 2.5 3.7 112 chrX 15429233 intron Cngl - chrX 15429289 intron Cngl - chrX 15429345 intron Cngl - chrX_13_15425001 chrX_15425001 RAL-737 2422 chrX 15565649 15565663 chrX 15565735 15565749 7 86 5.0 5.0 5.0 1.2 100 chrX 15565649 intergenic not near genes chrX 15565699 intergenic not near genes chrX 15565749 intergenic not near genes chrX_7_15565001 chrX_15565001 RAL-737 2423 chrX 15671200 15671208 chrX 15671287 15671294 6 87 4.0 0.0 2.0 2.0 94 chrX 15671200 intergenic CG15646 - chrX 15671247 intergenic CG15646 - chrX 15671294 intergenic CG15646 - chrX_6_15670001 chrX_15670001 RAL-737 2424 chrX 15681395 15681423 chrX 15681477 15681505 12 80 2.5 4.5 3.5 2.7 110 chrX 15681395 intergenic not near genes chrX 15681450 intergenic not near genes chrX 15681505 intergenic not near genes chrX_12_15680001 chrX_15680001 RAL-737 2425 chrX 15749659 15749684 chrX 15749762 15749764 7 100 2.0 2.5 2.2 2.2 105 chrX 15749659 intron CG8239 + chrX 15749712 intron CG8239 + chrX 15749764 intron CG8239 + chrX_7_15745001 chrX_15745001 RAL-737 2426 chrX 15809343 15809374 chrX 15809434 15809465 9 91 4.0 3.0 3.5 2.0 122 chrX 15809343 intron sd + chrX 15809404 intron sd + chrX 15809465 intron sd + chrX_9_15805001 chrX_15805001 RAL-737 2427 chrX 16176187 16176206 chrX 16176263 16176277 5 74 5.5 4.5 5.0 0.8 90 chrX 16176187 intergenic not near genes chrX 16176232 intergenic not near genes chrX 16176277 intergenic not near genes chrX_5_16175001 chrX_16175001 RAL-737 2428 chrX 16222779 16222810 chrX 16231129 16231157 roo 8 8350 1.5 4.5 3.0 2.0 8378 chrX 16222779 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231157 intergenic not near genes chrX_8_16225001 chrX_16225001 RAL-737 2429 chrX 16295525 16295555 chrX 16295609 16295609 10 81 2.5 0.0 1.2 4.5 84 chrX 16295525 intron CG9911 - chrX 16295567 intron CG9911 - chrX 16295609 intron CG9911 - chrX_10_16295001 chrX_16295001 RAL-737 2430 chrX 16404353 16404380 chrX 16404449 16404476 5 96 4.5 2.5 3.5 1.1 123 chrX 16404353 intron CG9981 - chrX 16404414 intron CG9981 - chrX 16404476 intron CG9981 - chrX_5_16400001 chrX_16400001 RAL-737 2431 chrX 16492644 16492679 chrX 16498221 16498256 mdg3 20 5577 5.0 3.0 4.0 4.0 5612 chrX 16492644 intron para - chrX 16495450 intron para - chrX 16498256 intron para - chrX_20_16495001 chrX_16495001 RAL-737 2432 chrX 16689627 16689656 chrX 16689713 16689726 11 78 2.0 4.5 3.2 2.6 99 chrX 16689627 intron Sep4 - chrX 16689676 intron Sep4 - chrX 16689726 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-737 2433 chrX 16833205 16833220 chrX 16833290 16833305 5 84 2.0 0.5 1.2 2.3 100 chrX 16833205 intron CG13004 - chrX 16833255 intron CG13004 - chrX 16833305 intron CG13004 - chrX_5_16830001 chrX_16830001 RAL-737 2434 chrX 16936001 16936030 chrX 16936419 16936443 jockey 7 416 0.0 2.0 1.0 3.5 442 chrX 16936001 intron CG4928 + chrX 16936222 intron CG4928 + chrX 16936443 intron CG4928 + chrX_7_16935001 chrX_16935001 RAL-737 2435 chrX 17043314 17043343 chrX 17043864 17043893 11 549 4.0 4.0 4.0 2.2 579 chrX 17043314 intron CG45002 - chrX 17043604 intron CG45002 - chrX 17043893 intron CG45002 - chrX_11_17040001 chrX_17040001 RAL-737 2436 chrX 17057937 17057964 chrX 17058178 17058205 pogo 5 241 1.5 0.0 0.8 2.8 268 chrX 17057937 intron CG45002 - chrX 17058071 intron CG45002 - chrX 17058205 intron CG45002 - chrX_5_17055001 chrX_17055001 RAL-737 2437 chrX 17058504 17058535 chrX 17058652 17058664 8 137 3.5 4.5 4.0 1.6 160 chrX 17058504 intron CG45002 - chrX 17058584 intron CG45002 - chrX 17058664 intron CG45002 - chrX_8_17055001 chrX_17055001 RAL-737 2438 chrX 17063177 17063206 chrX 17063264 17063293 8 86 2.0 2.5 2.2 2.5 116 chrX 17063177 intron CG45002 - chrX 17063235 intron CG45002 - chrX 17063293 intron CG45002 - chrX_8_17060001 chrX_17060001 RAL-737 2439 chrX 17089599 17089631 chrX 17089725 17089757 4 124 4.0 7.0 5.5 0.6 158 chrX 17089599 intergenic not near genes chrX 17089678 intergenic not near genes chrX 17089757 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-737 2440 chrX 17111230 17111259 chrX 17111352 17111379 10 121 3.0 1.0 2.0 3.3 149 chrX 17111230 intron CG5004 + chrX 17111304 intron CG5004 + chrX 17111379 intron CG5004 + chrX_10_17110001 chrX_17110001 RAL-737 2441 chrX 17195211 17195224 chrX 17200296 17200309 flea 7 5084 6.5 4.0 5.2 1.1 5098 chrX 17195211 3` UTR baz + chrX 17197760 3` UTR baz + chrX 17200309 3` UTR baz + chrX_7_17195001 chrX_17195001 RAL-737 2442 chrX 17234259 17234293 chrX 17234353 17234369 4 83 4.5 0.0 2.2 1.2 110 chrX 17234259 intron f + chrX 17234314 intron f + chrX 17234369 intron f + chrX_4_17230001 chrX_17230001 RAL-737 2443 chrX 17262174 17262187 chrX 17262260 17262273 5 86 9.0 5.5 7.2 0.6 99 chrX 17262174 intron f + chrX 17262224 intron f + chrX 17262273 intron f + chrX_5_17260001 chrX_17260001 RAL-737 2444 chrX 17290067 17290096 chrX 17290143 17290171 8 76 2.5 2.0 2.2 2.5 104 chrX 17290067 intron,intron CG5445 +,Fim - chrX 17290119 intron,intron CG5445 +,Fim - chrX 17290171 intron,intron CG5445 +,Fim - chrX_8_17290001 chrX_17290001 RAL-737 2445 chrX 17332505 17332511 chrX 17332582 17332588 4 77 0.0 1.0 0.5 2.7 83 chrX 17332505 intergenic not near genes chrX 17332546 intergenic not near genes chrX 17332588 intergenic not near genes chrX_4_17330001 chrX_17330001 RAL-737 2446 chrX 17352590 17352624 chrX 17352693 17352727 16 102 0.5 6.0 3.2 3.8 137 chrX 17352590 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352727 intergenic not near genes chrX_16_17350001 chrX_17350001 RAL-737 2447 chrX 17680892 17680923 chrX 17680965 17680990 10 72 3.0 4.5 3.8 2.1 98 chrX 17680892 intron chas - chrX 17680941 intron chas - chrX 17680990 intron chas - chrX_10_17680001 chrX_17680001 RAL-737 2448 chrX 17911851 17911876 chrX 17911938 17911957 13 86 1.0 3.0 2.0 4.3 106 chrX 17911851 intron CG6847 + chrX 17911904 intron CG6847 + chrX 17911957 intron CG6847 + chrX_13_17910001 chrX_17910001 RAL-737 2449 chrX 17968894 17968929 chrX 17969012 17969047 14 118 1.5 5.0 3.2 3.3 153 chrX 17968894 intron Sh - chrX 17968970 intron Sh - chrX 17969047 intron Sh - chrX_14_17965001 chrX_17965001 RAL-737 2450 chrX 18126603 18126828 chrX 18126724 18126905 17 106 4.5 5.5 5.0 2.8 302 chrX 18126603 intron CG32553 - chrX 18126754 intron CG32553 - chrX 18126905 intron CG32553 - chrX_17_18125001 chrX_18125001 RAL-737 2451 chrX 18194068 18194102 chrX 18194603 18194637 BS 9 530 3.5 3.0 3.2 2.1 569 chrX 18194068 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194637 intron Frq2 + chrX_9_18190001 chrX_18190001 RAL-737 2452 chrX 18247624 18247649 chrX 18247697 18247727 12 74 4.0 6.5 5.2 1.9 103 chrX 18247624 intergenic not near genes chrX 18247676 intergenic not near genes chrX 18247727 intergenic not near genes chrX_12_18245001 chrX_18245001 RAL-737 2453 chrX 18297555 18297569 chrX 18297634 18297648 4 79 4.5 4.0 4.2 0.8 93 chrX 18297555 intergenic not near genes chrX 18297602 intergenic not near genes chrX 18297648 intergenic not near genes chrX_4_18295001 chrX_18295001 RAL-737 2454 chrX 18429492 18429519 chrX 18434803 18434830 Transpac 6 5310 5.5 6.5 6.0 0.9 5338 chrX 18429492 intergenic not near genes chrX 18432161 intergenic not near genes chrX 18434830 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-737 2455 chrX 18558798 18558806 chrX 18558859 18558888 6 74 1.0 4.0 2.5 1.7 90 chrX 18558798 intron Bx + chrX 18558843 intron Bx + chrX 18558888 intron Bx + chrX_6_18555001 chrX_18555001 RAL-737 2456 chrX 18645017 18645042 chrX 18645115 18645117 6 91 4.0 5.0 4.5 1.1 100 chrX 18645017 intron Rip11 - chrX 18645067 intron Rip11 - chrX 18645117 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-737 2457 chrX 18645043 18645046 chrX 18645113 18645144 4 91 3.0 5.0 4.0 0.8 101 chrX 18645043 intron Rip11 - chrX 18645094 intron Rip11 - chrX 18645144 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-737 2458 chrX 18698849 18698877 chrX 18698966 18698994 6 116 2.0 5.5 3.8 1.2 145 chrX 18698849 intergenic not near genes chrX 18698922 intergenic not near genes chrX 18698994 intergenic not near genes chrX_6_18695001 chrX_18695001 RAL-737 2459 chrX 18774452 18774472 chrX 18774536 18774556 5 82 4.5 2.5 3.5 1.1 104 chrX 18774452 intergenic CCKLR-17D3 - chrX 18774504 intergenic CCKLR-17D3 - chrX 18774556 intergenic not near genes chrX_5_18770001 chrX_18770001 RAL-737 2460 chrX 19060407 19060439 chrX 19065191 19065222 Doc 14 4781 4.5 4.0 4.2 2.7 4815 chrX 19060407 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065222 intron CG14190 + chrX_14_19060001 chrX_19060001 RAL-737 2461 chrX 19065403 19065414 chrX 19068593 19068625 11 3196 34.0 25.5 29.8 0.4 3222 chrX 19065403 5` UTR CG14190 + chrX 19067014 exon CG14190 + chrX 19068625 exon CG34330 - chrX_11_19065001 chrX_19065001 RAL-737 2462 chrX 19084099 19084122 chrX 19084219 19084242 5 120 0.0 2.0 1.0 2.5 143 chrX 19084099 intergenic CR45503 + chrX 19084170 intergenic CR45503 + chrX 19084242 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-737 2463 chrX 19098764 19098783 chrX 19098842 19098847 11 76 2.0 5.0 3.5 2.4 83 chrX 19098764 intergenic not near genes chrX 19098806 intergenic not near genes chrX 19098847 intergenic not near genes chrX_11_19095001 chrX_19095001 RAL-737 2464 chrX 19109116 19109136 chrX 19109292 19109297 5 174 0.0 2.5 1.2 2.3 181 chrX 19109116 intergenic not near genes chrX 19109206 intergenic not near genes chrX 19109297 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-737 2465 chrX 19119699 19119715 chrX 19119785 19119790 5 83 2.0 1.5 1.8 1.8 91 chrX 19119699 intergenic not near genes chrX 19119744 intergenic not near genes chrX 19119790 intergenic not near genes chrX_5_19115001 chrX_19115001 RAL-737 2466 chrX 19124952 19124966 chrX 19125045 19125059 8 93 4.0 2.0 3.0 2.0 107 chrX 19124952 intergenic tgy - chrX 19125006 3` UTR tgy - chrX 19125059 3` UTR tgy - chrX_8_19125001 chrX_19125001 RAL-737 2467 chrX 19136554 19136584 chrX 19143474 19143503 412 11 6916 3.5 6.0 4.8 1.9 6949 chrX 19136554 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_11_19140001 chrX_19140001 RAL-737 2468 chrX 19191507 19191522 chrX 19191681 19191701 9 178 4.0 0.0 2.0 3.0 194 chrX 19191507 intergenic HP1D3csd + chrX 19191604 intergenic not near genes chrX 19191701 intergenic not near genes chrX_9_19190001 chrX_19190001 RAL-737 2469 chrX 13057298 13057300 chrX 19242812 19242814 24 6185514 14.0 12.0 13.0 1.7 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_24_16150001 chrX_16150001 RAL-737 2470 chrX 19320226 19320248 chrX 19320314 19320336 10 87 4.5 5.5 5.0 1.7 110 chrX 19320226 intron out - chrX 19320281 intron out - chrX 19320336 intron out - chrX_10_19320001 chrX_19320001 RAL-737 2471 chrX 19339742 19339767 chrX 19339818 19339843 7 75 2.0 1.0 1.5 2.8 101 chrX 19339742 intron nAChRalpha7 - chrX 19339792 intron nAChRalpha7 - chrX 19339843 intron nAChRalpha7 - chrX_7_19335001 chrX_19335001 RAL-737 2472 chrX 19352467 19352489 chrX 19370476 19370497 7 18009 20.5 3.5 12.0 0.5 18030 chrX 19352467 intergenic not near genes chrX 19361482 intron kek5 + chrX 19370497 intron kek5 + chrX_7_19360001 chrX_19360001 RAL-737 2473 chrX 19356989 19357019 chrX 19358429 19358458 NOF 10 1441 3.5 0.5 2.0 3.3 1469 chrX 19356989 intron kek5 + chrX 19357724 intron kek5 + chrX 19358458 intron kek5 + chrX_10_19355001 chrX_19355001 RAL-737 2474 chrX 19380166 19380185 chrX 19380402 19380426 pogo 10 239 5.0 5.0 5.0 1.7 260 chrX 19380166 intron kek5 + chrX 19380296 intron kek5 + chrX 19380426 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-737 2475 chrX 16983076 16983076 chrX 19404964 19404965 4 2421888 20.5 9.0 14.8 0.3 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-737 2476 chrX 19461146 19461168 chrX 19461242 19461264 5 94 6.5 2.0 4.2 1.0 118 chrX 19461146 intron kek5 + chrX 19461205 intron kek5 + chrX 19461264 intron kek5 + chrX_5_19460001 chrX_19460001 RAL-737 2477 chrX 19472119 19472159 chrX 19472689 19472714 jockey 12 560 6.5 6.0 6.2 1.7 595 chrX 19472119 intergenic kek5 + chrX 19472416 intergenic not near genes chrX 19472714 intergenic not near genes chrX_12_19470001 chrX_19470001 RAL-737 2478 chrX 19710077 19710100 chrX 19711863 19711868 S-element 6 1781 1.0 8.5 4.8 1.0 1791 chrX 19710077 intron meso18E - chrX 19710972 intron meso18E - chrX 19711868 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-737 2479 chrX 19740441 19740460 chrX 19740554 19740554 5 109 3.5 7.0 5.2 0.8 113 chrX 19740441 3` UTR CG14234 + chrX 19740498 intergenic CoVIb -,CG14234 + chrX 19740554 3` UTR CoVIb - chrX_5_19740001 chrX_19740001 RAL-737 2480 chrX 19880386 19880394 chrX 19880505 19880513 4 119 2.0 4.5 3.2 1.0 127 chrX 19880386 intron Hers + chrX 19880450 intron Hers + chrX 19880513 intron Hers + chrX_4_19880001 chrX_19880001 RAL-737 2481 chrX 19881458 19881485 chrX 19881539 19881555 11 79 3.5 3.0 3.2 2.6 97 chrX 19881458 intron Hers + chrX 19881506 intron Hers + chrX 19881555 intron Hers + chrX_11_19880001 chrX_19880001 RAL-737 2482 chrX 19983866 19983896 chrX 19983946 19983956 4 75 2.0 3.0 2.5 1.1 90 chrX 19983866 intergenic not near genes chrX 19983911 intergenic not near genes chrX 19983956 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-737 2483 chrX 20041532 20041565 chrX 20041612 20041645 14 78 4.0 6.0 5.0 2.3 113 chrX 20041532 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041645 intron Dop2R - chrX_14_20040001 chrX_20040001 RAL-737 2484 chrX 20124087 20124109 chrX 20124226 20124248 7 139 2.5 2.0 2.2 2.2 161 chrX 20124087 intron CG34331 + chrX 20124168 intron CG34331 + chrX 20124248 intron CG34331 + chrX_7_20120001 chrX_20120001 RAL-737 2485 chrX 20369322 20369343 chrX 20369406 20369427 4 84 1.5 6.5 4.0 0.8 105 chrX 20369322 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369427 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-737 2486 chrX 20374106 20374116 chrX 20374181 20374185 6 74 0.0 7.0 3.5 1.3 79 chrX 20374106 intergenic not near genes chrX 20374146 intergenic not near genes chrX 20374185 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-737 2487 chrX 20374118 20374125 chrX 20374171 20374201 4 70 0.0 6.5 3.2 1.0 83 chrX 20374118 intergenic not near genes chrX 20374160 intergenic not near genes chrX 20374201 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-737 2488 chrX 20386820 20386852 chrX 20386906 20386938 11 84 3.5 5.5 4.5 2.0 118 chrX 20386820 intergenic not near genes chrX 20386879 intergenic not near genes chrX 20386938 intergenic not near genes chrX_11_20385001 chrX_20385001 RAL-737 2489 chrX 20484388 20484406 chrX 20484493 20484502 4 103 1.5 7.0 4.2 0.8 114 chrX 20484388 intron RhoGAP19D - chrX 20484445 intron RhoGAP19D - chrX 20484502 intron RhoGAP19D - chrX_4_20480001 chrX_20480001 RAL-737 2490 chrX 20493917 20493929 chrX 20494078 20494089 5 161 0.0 5.0 2.5 1.4 172 chrX 20493917 intron RhoGAP19D - chrX 20494003 intron RhoGAP19D - chrX 20494089 intron RhoGAP19D - chrX_5_20490001 chrX_20490001 RAL-737 2491 chrX 20635434 20635447 chrX 20635600 20635613 4 166 1.5 4.0 2.8 1.1 179 chrX 20635434 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635613 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-737 2492 chrX 20662319 20662334 chrX 20662402 20662413 5 81 5.0 1.0 3.0 1.2 94 chrX 20662319 intron CG1835 + chrX 20662366 intron CG1835 + chrX 20662413 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-737 2493 chrX 20710411 20710438 chrX 20710488 20710515 11 77 0.0 3.5 1.8 3.9 104 chrX 20710411 intergenic not near genes chrX 20710463 intergenic not near genes chrX 20710515 intergenic not near genes chrX_11_20710001 chrX_20710001 RAL-737 2494 chrX 20741591 20741612 chrX 20741667 20741688 8 74 3.0 0.0 1.5 3.2 97 chrX 20741591 intergenic not near genes chrX 20741640 intergenic not near genes chrX 20741688 intergenic not near genes chrX_8_20740001 chrX_20740001 RAL-737 2495 chrX 20810726 20810745 chrX 20810804 20810811 5 76 7.0 5.5 6.2 0.7 85 chrX 20810726 intron shakB - chrX 20810768 intron shakB - chrX 20810811 intron shakB - chrX_5_20810001 chrX_20810001 RAL-737 2496 chrX 20836726 20836759 chrX 20844328 20844355 roo 11 7599 5.0 3.5 4.2 2.1 7629 chrX 20836726 intron shakB - chrX 20840540 intron shakB - chrX 20844355 intron shakB - chrX_11_20840001 chrX_20840001 RAL-737 2497 chrX 20897941 20897969 chrX 20898029 20898034 4 76 5.0 1.0 3.0 1.0 93 chrX 20897941 intron shakB - chrX 20897988 intron shakB - chrX 20898034 intron shakB - chrX_4_20895001 chrX_20895001 RAL-737 2498 chrX 20915043 20915074 chrX 20915214 20915245 14 167 3.0 2.5 2.8 3.7 202 chrX 20915043 intron shakB - chrX 20915144 intron shakB - chrX 20915245 intron shakB - chrX_14_20915001 chrX_20915001 RAL-737 2499 chrX 20940718 20940749 chrX 20942187 20942218 hobo 6 1468 8.5 2.5 5.5 0.9 1500 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942218 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-737 2500 chrX 21008661 21008691 chrX 21008748 21008778 6 87 3.0 3.5 3.2 1.4 117 chrX 21008661 intergenic not near genes chrX 21008720 intergenic not near genes chrX 21008778 intergenic not near genes chrX_6_21005001 chrX_21005001 RAL-737 2501 chrX 21009823 21009844 chrX 21009931 21009952 11 108 1.0 2.0 1.5 4.4 129 chrX 21009823 intergenic not near genes chrX 21009888 intergenic not near genes chrX 21009952 intergenic not near genes chrX_11_21005001 chrX_21005001 RAL-737 2502 chrX 21022256 21022272 chrX 21022338 21022354 5 82 17.0 12.0 14.5 0.3 98 chrX 21022256 intergenic not near genes chrX 21022305 intergenic not near genes chrX 21022354 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-737 2503 chrX 21022254 21022279 chrX 21022355 21022373 7 92 17.0 10.0 13.5 0.5 119 chrX 21022254 intergenic not near genes chrX 21022314 intergenic not near genes chrX 21022373 intergenic not near genes chrX_7_21020001 chrX_21020001 RAL-737 2504 chrX 21055689 21055721 chrX 21055765 21055797 9 76 4.5 1.5 3.0 2.2 108 chrX 21055689 intron bves + chrX 21055743 intron bves + chrX 21055797 intron bves + chrX_9_21055001 chrX_21055001 RAL-737 2505 chrX 21076336 21076358 chrX 21076410 21076413 7 75 1.5 4.0 2.8 1.8 77 chrX 21076336 intron bves + chrX 21076374 intron bves + chrX 21076413 intron bves + chrX_7_21075001 chrX_21075001 RAL-737 2506 chrX 21077614 21077631 chrX 21077687 21077695 4 70 2.5 2.5 2.5 1.1 81 chrX 21077614 intron bves + chrX 21077654 intron bves + chrX 21077695 intron bves + chrX_4_21075001 chrX_21075001 RAL-737 2507 chrX 21086132 21086141 chrX 21087161 21087169 jockey 4 1029 10.0 4.5 7.2 0.5 1037 chrX 21086132 intergenic not near genes chrX 21086650 intergenic not near genes chrX 21087169 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-737 2508 chrX 21086157 21086165 chrX 21087157 21087194 jockey 7 1020 5.0 3.5 4.2 1.3 1037 chrX 21086157 intergenic not near genes chrX 21086676 intergenic not near genes chrX 21087194 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-737 2509 chrX 21088040 21088073 chrX 21088172 21088194 6 126 5.0 1.5 3.2 1.4 154 chrX 21088040 intergenic not near genes chrX 21088117 intergenic not near genes chrX 21088194 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-737 2510 chrX 21188847 21188865 chrX 21188935 21188953 5 88 6.0 5.5 5.8 0.7 106 chrX 21188847 intergenic CR45506 + chrX 21188900 intergenic CR45506 + chrX 21188953 intergenic CR45506 + chrX_5_21185001 chrX_21185001 RAL-737 2511 chrX 21188867 21188868 chrX 21188926 21188956 4 68 5.0 2.5 3.8 0.8 89 chrX 21188867 intergenic CR45506 + chrX 21188912 intergenic CR45506 + chrX 21188956 intergenic CR45506 + chrX_4_21185001 chrX_21185001 RAL-737 2512 chrX 21268078 21268087 chrX 21268159 21268168 5 81 5.0 4.0 4.5 0.9 90 chrX 21268078 intron CG32521 - chrX 21268123 intron CG32521 - chrX 21268168 intron CG32521 - chrX_5_21265001 chrX_21265001 RAL-737 2513 chrX 21328117 21328140 chrX 21328228 21328247 8 110 2.0 4.0 3.0 2.0 130 chrX 21328117 3` UTR CG1486 + chrX 21328182 intergenic CG1486 +,tty - chrX 21328247 intergenic CG1486 +,tty - chrX_8_21325001 chrX_21325001 RAL-737 2514 chrX 21410643 21410667 chrX 21410722 21410746 11 79 3.5 2.5 3.0 2.8 103 chrX 21410643 intergenic CR45003 - chrX 21410694 intergenic CR45003 - chrX 21410746 intergenic CR45003 - chrX_11_21410001 chrX_21410001 RAL-737 2515 chrX 21419208 21419243 chrX 21419293 21419328 16 84 2.0 2.0 2.0 5.3 120 chrX 21419208 intergenic not near genes chrX 21419268 intergenic not near genes chrX 21419328 intergenic not near genes chrX_16_21415001 chrX_21415001 RAL-737 2516 chrX 21458693 21458729 chrX 21464129 21464165 Ivk 12 5436 0.5 4.5 2.5 3.4 5472 chrX 21458693 intergenic not near genes chrX 21461429 intergenic not near genes chrX 21464165 intergenic not near genes chrX_12_21460001 chrX_21460001 RAL-737 2517 chrX 21571876 21571883 chrX 21572009 21572016 4 133 0.0 4.5 2.2 1.2 140 chrX 21571876 intergenic not near genes chrX 21571946 intergenic not near genes chrX 21572016 intergenic not near genes chrX_4_21570001 chrX_21570001 RAL-737 2518 chrX 21668255 21668289 chrX 21668340 21668369 6 80 30.5 25.5 28.0 0.2 114 chrX 21668255 intergenic not near genes chrX 21668312 intergenic not near genes chrX 21668369 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-737 2519 chrX 22478883 22478898 chrX 22479016 22479031 6 133 1.0 5.0 3.0 1.5 148 chrX 22478883 intron CG12576 - chrX 22478957 intron CG12576 - chrX 22479031 intron CG12576 - chrX_6_22475001 chrX_22475001 RAL-737 2520 chrX 22522637 22522659 chrX 22525457 22525479 NOF 13 2820 2.5 0.5 1.5 5.2 2842 chrX 22522637 intron CG17600 + chrX 22524058 intron CG17600 + chrX 22525479 intron CG17600 + chrX_13_22520001 chrX_22520001 RAL-737 2521 chrX 22642585 22642600 chrX 22642669 22642684 7 83 1.5 4.5 3.0 1.8 99 chrX 22642585 intergenic not near genes chrX 22642634 intergenic not near genes chrX 22642684 intergenic not near genes chrX_7_22640001 chrX_22640001 RAL-737 2522 chrX 22660577 22660591 chrX 22660651 22660675 5 77 8.0 0.5 4.2 1.0 98 chrX 22660577 intron CR44997 + chrX 22660626 intron CR44997 + chrX 22660675 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-737 2523 chrX 22665792 22665823 chrX 22665871 22665901 10 74 2.0 2.0 2.0 3.3 109 chrX 22665792 intron CR44997 + chrX 22665846 intron CR44997 + chrX 22665901 intron CR44997 + chrX_10_22665001 chrX_22665001 RAL-737 2524 chrX 22697493 22697523 chrX 22701790 22701820 Juan 11 4295 3.5 7.0 5.2 1.8 4327 chrX 22697493 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701820 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-737 2525 chrX 22764379 22764400 chrX 22764475 22764496 5 96 3.5 5.5 4.5 0.9 117 chrX 22764379 intron CR44997 + chrX 22764438 intron CR44997 + chrX 22764496 intron CR44997 + chrX_5_22760001 chrX_22760001 RAL-737 2526 chrX 22771516 22771534 chrX 22774807 22774817 297 7 3289 6.0 5.0 5.5 1.1 3301 chrX 22771516 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774817 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-737 2527 chrX 22824233 22824245 chrX 22824359 22824370 5 126 0.5 3.5 2.0 1.7 137 chrX 22824233 intergenic fog - chrX 22824302 intergenic fog - chrX 22824370 3` UTR fog - chrX_5_22820001 chrX_22820001 RAL-737 2528 chrX 22824246 22824443 chrX 22824358 22824576 12 131 0.5 3.5 2.0 4.0 330 chrX 22824246 intergenic fog - chrX 22824411 3` UTR fog - chrX 22824576 3` UTR fog - chrX_12_22820001 chrX_22820001 RAL-737 2529 chrX 22898863 22898869 chrX 22899260 22899266 4 397 1.5 0.0 0.8 2.2 403 chrX 22898863 intergenic not near genes chrX 22899064 intergenic not near genes chrX 22899266 intergenic not near genes chrX_4_22895001 chrX_22895001 RAL-737 2530 chrX 22967391 22967524 chrX 23154542 23154689 diver 6 187151 3.0 8.0 5.5 0.9 187298 chrX 22967391 intergenic not near genes chrX 23061040 intergenic not near genes chrX 23154689 intergenic not near genes chrX_6_23060001 chrX_23060001 RAL-737 2531 chrX 22987104 22987127 chrX 22989762 22989783 Burdock 6 2653 3.0 2.5 2.8 1.6 2679 chrX 22987104 intron,intron stnA -,stnB - chrX 22988444 intron,intron stnA -,stnB - chrX 22989783 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-737 2532 chrX 22996312 22996341 chrX 23003546 23003546 roo 8 7229 3.0 7.5 5.2 1.3 7234 chrX 22996312 intron,intron stnA -,stnB - chrX 22999929 intron,intron stnA -,stnB - chrX 23003546 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-737 2533 chrY 975812 975817 chrY 975885 975972 4 129 119.5 153.0 136.2 0.0 160 chrY 975812 intergenic not near genes chrY 975892 intergenic not near genes chrY 975972 intergenic not near genes chrY_4_975001 chrY_975001 RAL-737 2534 chrY 1419903 1419928 chrY 1420157 1420182 6 250 14.5 10.5 12.5 0.4 279 chrY 1419903 intergenic not near genes chrY 1420042 intergenic not near genes chrY 1420182 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-737 2535 chrY 3664997 3665013 chrY 3665101 3665116 5 104 0.5 0.5 0.5 3.3 119 chrY 3664997 intergenic CG40948 + chrY 3665056 intergenic not near genes chrY 3665116 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-737