SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47459	47485	chr2L	52564	52590	jockey	8	5105	1.5	6.0	3.8	1.7	5131	chr2L	47459	intron	Cda5 -	chr2L	50024	intron	Cda5 -	chr2L	52590	intron	Cda5 -	chr2L_8_50001	chr2L_50001	RAL-732
4	chr2L	347886	347918	chr2L	355385	355418	blood	4	7500	3.5	1.5	2.5	1.1	7532	chr2L	347886	3` UTR	Plc21C +	chr2L	351652	intron	Plc21C +	chr2L	355418	3` UTR	Plc21C +	chr2L_4_350001	chr2L_350001	RAL-732
9	chr2L	686916	686950	chr2L	695956	695990	roo	12	9039	3.5	1.0	2.2	3.8	9074	chr2L	686916	intron	ds -	chr2L	691453	intron	ds -	chr2L	695990	intron	ds -	chr2L_12_690001	chr2L_690001	RAL-732
11	chr2L	770464	770488	chr2L	772245	772267	Bari1	12	1780	4.0	3.5	3.8	2.5	1803	chr2L	770464	intergenic	not near genes	chr2L	771366	intergenic	not near genes	chr2L	772267	intergenic	CR44614 +	chr2L_12_770001	chr2L_770001	RAL-732
14	chr2L	976878	976911	chr2L	984514	984546	roo	8	7636	2.0	1.5	1.8	2.9	7668	chr2L	976878	intergenic	not near genes	chr2L	980712	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_8_980001	chr2L_980001	RAL-732
19	chr2L	1220133	1220149	chr2L	1227599	1227615	blood	4	7466	7.5	0.5	4.0	0.8	7482	chr2L	1220133	intron	CG42329 +	chr2L	1223874	intron	CG42329 +	chr2L	1227615	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-732
21	chr2L	1570702	1570718	chr2L	1573574	1573590	F-element	7	2872	1.5	4.0	2.8	1.8	2888	chr2L	1570702	intron	haf +	chr2L	1572146	intron	haf +	chr2L	1573590	intron	haf +	chr2L_7_1570001	chr2L_1570001	RAL-732
27	chr2L	1679003	1679008	chr2L	1686468	1686473	blood	4	7465	0.5	6.0	3.2	1.0	7470	chr2L	1679003	intron	chinmo +	chr2L	1682738	intron	chinmo +	chr2L	1686473	intron	chinmo +	chr2L_4_1680001	chr2L_1680001	RAL-732
28	chr2L	1711360	1711387	chr2L	1711684	1711710	mdg3	7	323	2.0	5.0	3.5	1.6	350	chr2L	1711360	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711710	3` UTR	frtz -	chr2L_7_1710001	chr2L_1710001	RAL-732
37	chr2L	2100375	2100400	chr2L	2109526	2109550	roo	6	9150	4.5	1.0	2.8	1.6	9175	chr2L	2100375	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109550	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-732
38	chr2L	2112121	2112141	chr2L	2119783	2119803	opus	4	7661	4.0	5.0	4.5	0.7	7682	chr2L	2112121	intergenic	not near genes	chr2L	2115962	intergenic	not near genes	chr2L	2119803	intergenic	not near genes	chr2L_4_2115001	chr2L_2115001	RAL-732
40	chr2L	2294049	2294073	chr2L	2299250	2299278	copia	7	5204	3.0	3.5	3.2	1.7	5229	chr2L	2294049	intergenic	not near genes	chr2L	2296664	intergenic	not near genes	chr2L	2299278	intergenic	not near genes	chr2L_7_2295001	chr2L_2295001	RAL-732
45	chr2L	2565554	2565562	chr2L	2571627	2571635	297	4	6073	1.5	4.0	2.8	1.1	6081	chr2L	2565554	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571635	intron	Cyp309a2 -	chr2L_4_2565001	chr2L_2565001	RAL-732
52	chr2L	2933307	2933325	chr2L	2935484	2935502	pogo	7	2177	2.5	4.5	3.5	1.6	2195	chr2L	2933307	intron	lilli +	chr2L	2934404	intron	lilli +	chr2L	2935502	intron	lilli +	chr2L_7_2930001	chr2L_2930001	RAL-732
55	chr2L	3073040	3073052	chr2L	3078243	3078255	copia	6	5203	3.5	3.0	3.2	1.4	5215	chr2L	3073040	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078255	intron	toc -	chr2L_6_3075001	chr2L_3075001	RAL-732
59	chr2L	3202736	3202763	chr2L	3210165	3210192	mdg1	4	7429	0.0	1.0	0.5	2.7	7456	chr2L	3202736	intergenic	not near genes	chr2L	3206464	intergenic	not near genes	chr2L	3210192	intergenic	CR45336 +	chr2L_4_3205001	chr2L_3205001	RAL-732
60	chr2L	3251497	3251522	chr2L	3259062	3259087	springer	5	7565	2.0	3.5	2.8	1.3	7590	chr2L	3251497	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259087	intergenic	not near genes	chr2L_5_3255001	chr2L_3255001	RAL-732
64	chr2L	3388604	3388623	chr2L	3388845	3388862	pogo	5	240	1.5	1.5	1.5	2.0	258	chr2L	3388604	intergenic	CG42460 -	chr2L	3388733	intergenic	CG42460 -	chr2L	3388862	intergenic	CG42460 -,CR44791 +	chr2L_5_3385001	chr2L_3385001	RAL-732
70	chr2L	3649787	3649798	chr2L	3654988	3655000	copia	4	5202	2.0	2.5	2.2	1.2	5213	chr2L	3649787	intron	for -	chr2L	3652394	intron	for -	chr2L	3655000	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-732
73	chr2L	4066036	4066064	chr2L	4068861	4068889	Juan	5	2825	1.5	1.5	1.5	2.0	2853	chr2L	4066036	intron	ed +	chr2L	4067462	intron	ed +	chr2L	4068889	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-732
81	chr2L	4601702	4601737	chr2L	4609143	4609178	mdg1	12	7441	4.0	1.5	2.8	3.2	7476	chr2L	4601702	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609178	intron	dp -	chr2L_12_4605001	chr2L_4605001	RAL-732
85	chr2L	4918172	4918197	chr2L	4923244	4923270	jockey	8	5073	3.0	3.0	3.0	2.0	5098	chr2L	4918172	intron	hoe1 -	chr2L	4920721	intron	hoe1 -	chr2L	4923270	intron	hoe1 -	chr2L_8_4920001	chr2L_4920001	RAL-732
105	chr2L	6363157	6363179	chr2L	6366078	6366100	Burdock	9	2921	1.5	2.5	2.0	3.0	2943	chr2L	6363157	intergenic	not near genes	chr2L	6364628	intergenic	not near genes	chr2L	6366100	intergenic	not near genes	chr2L_9_6360001	chr2L_6360001	RAL-732
106	chr2L	6426859	6426888	chr2L	6445119	6445148	roo	9	18260	3.0	8.0	5.5	1.4	18289	chr2L	6426859	3` UTR	CG9527 -	chr2L	6436004	intron	CG9527 -	chr2L	6445148	exon	CG9527 -	chr2L_9_6435001	chr2L_6435001	RAL-732
112	chr2L	6876779	6876803	chr2L	6882969	6882994	diver	5	6189	2.5	1.0	1.8	1.8	6215	chr2L	6876779	intron	Nlg2 +	chr2L	6879886	intron	Nlg2 +	chr2L	6882994	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-732
119	chr2L	7343325	7343358	chr2L	7350441	7350474	roo	8	7116	2.0	1.0	1.5	3.2	7149	chr2L	7343325	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_8_7345001	chr2L_7345001	RAL-732
124	chr2L	7959044	7959064	chr2L	7960455	7960474	pogo	7	1411	3.0	0.0	1.5	2.8	1430	chr2L	7959044	intron	Snoo -	chr2L	7959759	intron	Snoo -	chr2L	7960474	intron	Snoo -	chr2L_7_7955001	chr2L_7955001	RAL-732
125	chr2L	7977090	7977109	chr2L	7984065	7984084	297	6	6975	2.5	2.5	2.5	1.7	6994	chr2L	7977090	intron	Snoo -	chr2L	7980587	intron	Snoo -	chr2L	7984084	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-732
127	chr2L	8013615	8013634	chr2L	8018819	8018838	copia	4	5204	2.0	0.0	1.0	2.0	5223	chr2L	8013615	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-732
128	chr2L	8018823	8018837	chr2L	8023607	8023621	Doc	4	4784	0.0	1.0	0.5	2.7	4798	chr2L	8018823	intron	Tg +	chr2L	8021222	intron	Tg +	chr2L	8023621	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-732
133	chr2L	8452418	8452453	chr2L	8461589	8461624	roo	8	9171	1.5	4.0	2.8	2.1	9206	chr2L	8452418	intron	fu12 -	chr2L	8457021	intron	fu12 -	chr2L	8461624	intron	fu12 -	chr2L_8_8455001	chr2L_8455001	RAL-732
139	chr2L	8723115	8723148	chr2L	8731492	8731525	Tirant	13	8377	2.0	3.0	2.5	3.7	8410	chr2L	8723115	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731525	intron	raw -	chr2L_13_8725001	chr2L_8725001	RAL-732
142	chr2L	9000290	9000312	chr2L	9007800	9007822	roo	9	7510	2.5	1.0	1.8	3.2	7532	chr2L	9000290	intergenic	Try29F +	chr2L	9004056	intergenic	not near genes	chr2L	9007822	intergenic	not near genes	chr2L_9_9000001	chr2L_9000001	RAL-732
149	chr2L	9393503	9393530	chr2L	9396470	9396497	jockey	8	2967	3.5	1.5	2.5	2.3	2994	chr2L	9393503	intron	Shawl -	chr2L	9395000	intron	Shawl -	chr2L	9396497	intron	Shawl -	chr2L_8_9395001	chr2L_9395001	RAL-732
159	chr2L	9973725	9973754	chr2L	9980844	9980873	HMS-Beagle	13	7118	4.5	3.0	3.8	2.7	7148	chr2L	9973725	intergenic	not near genes	chr2L	9977299	intergenic	not near genes	chr2L	9980873	intergenic	not near genes	chr2L_13_9975001	chr2L_9975001	RAL-732
166	chr2L	10156322	10156343	chr2L	10163792	10163813	blood	4	7470	2.5	2.5	2.5	1.1	7491	chr2L	10156322	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160068	intron	CG44153 -	chr2L	10163813	intron	CG44153 -	chr2L_4_10160001	chr2L_10160001	RAL-732
169	chr2L	10592860	10592871	chr2L	10600522	10600533	opus	4	7662	1.5	3.0	2.2	1.2	7673	chr2L	10592860	intron	Trim9 +	chr2L	10596696	intron	Trim9 +	chr2L	10600533	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-732
178	chr2L	10862844	10862870	chr2L	10864458	10864484	Rt1c	13	1614	4.0	3.0	3.5	2.9	1640	chr2L	10862844	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864484	3` UTR	CR43807 -	chr2L_13_10860001	chr2L_10860001	RAL-732
181	chr2L	10946951	10946969	chr2L	10956166	10956183	roo	7	9214	6.5	5.0	5.8	1.0	9232	chr2L	10946951	intron	dpr2 -	chr2L	10951567	intron	dpr2 -	chr2L	10956183	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-732
194	chr2L	11540581	11540603	chr2L	11547983	11548005	Tabor	4	7402	3.5	0.5	2.0	1.3	7424	chr2L	11540581	intergenic	not near genes	chr2L	11544293	intergenic	not near genes	chr2L	11548005	intergenic	not near genes	chr2L_4_11540001	chr2L_11540001	RAL-732
195	chr2L	11563636	11563666	chr2L	11568840	11568870	copia	7	5204	3.5	3.0	3.2	1.7	5234	chr2L	11563636	intergenic	not near genes	chr2L	11566253	intergenic	not near genes	chr2L	11568870	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-732
196	chr2L	11614055	11614081	chr2L	11615549	11615576	hopper2	5	1494	1.5	2.5	2.0	1.7	1521	chr2L	11614055	intron	kek2 +	chr2L	11614816	intron	kek2 +	chr2L	11615576	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-732
199	chr2L	11713505	11713540	chr2L	11720973	11721008	blood	7	7468	1.5	2.5	2.0	2.3	7503	chr2L	11713505	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-732
206	chr2L	12067333	12067361	chr2L	12074384	12074409	297	6	7051	1.5	3.0	2.2	1.9	7076	chr2L	12067333	intergenic	not near genes	chr2L	12070871	intergenic	not near genes	chr2L	12074409	intergenic	not near genes	chr2L_6_12070001	chr2L_12070001	RAL-732
216	chr2L	12728917	12728946	chr2L	12729161	12729190	pogo	6	244	2.0	3.5	2.8	1.6	273	chr2L	12728917	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729190	exon	MRP +	chr2L_6_12725001	chr2L_12725001	RAL-732
217	chr2L	12731054	12731092	chr2L	12735821	12735859	F-element	5	4767	2.5	0.5	1.5	2.0	4805	chr2L	12731054	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735859	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-732
218	chr2L	12739174	12739193	chr2L	12743955	12743974	Doc	7	4781	3.0	4.5	3.8	1.5	4800	chr2L	12739174	exon	MRP +	chr2L	12741574	intron	MRP +	chr2L	12743974	intron	MRP +	chr2L_7_12740001	chr2L_12740001	RAL-732
221	chr2L	12791602	12791633	chr2L	12795277	12795308	F-element	7	3675	3.0	3.0	3.0	1.8	3706	chr2L	12791602	intergenic	not near genes	chr2L	12793455	intergenic	not near genes	chr2L	12795308	intergenic	not near genes	chr2L_7_12790001	chr2L_12790001	RAL-732
222	chr2L	12861693	12861731	chr2L	12863160	12863198	hobo	10	1466	2.0	4.0	3.0	2.5	1505	chr2L	12861693	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863198	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-732
223	chr2L	12894016	12894046	chr2L	12895482	12895511	hobo	6	1465	1.0	2.5	1.8	2.1	1495	chr2L	12894016	intergenic	not near genes	chr2L	12894764	intergenic	not near genes	chr2L	12895511	intergenic	not near genes	chr2L_6_12890001	chr2L_12890001	RAL-732
224	chr2L	12933849	12933883	chr2L	12941316	12941350	blood	9	7467	4.5	1.5	3.0	2.2	7501	chr2L	12933849	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_9_12935001	chr2L_12935001	RAL-732
226	chr2L	13036245	13036275	chr2L	13036487	13036516	X-element	6	242	2.0	1.5	1.8	2.1	271	chr2L	13036245	intron	CG9932 -	chr2L	13036380	intron	CG9932 -	chr2L	13036516	intron	CG9932 -	chr2L_6_13035001	chr2L_13035001	RAL-732
231	chr2L	13405646	13405676	chr2L	13410443	13410473	Doc	15	4797	2.0	4.0	3.0	3.8	4827	chr2L	13405646	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410473	intron	CG7110 +	chr2L_15_13405001	chr2L_13405001	RAL-732
232	chr2L	13449460	13449496	chr2L	13456896	13456931	Quasimodo	4	7436	0.0	1.0	0.5	2.7	7471	chr2L	13449460	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456931	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	RAL-732
233	chr2L	13481450	13481472	chr2L	13482057	13482079	jockey	8	607	2.0	4.5	3.2	1.9	629	chr2L	13481450	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482079	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-732
235	chr2L	13761809	13761832	chr2L	13762918	13762943	Doc	5	1110	3.5	1.5	2.5	1.4	1134	chr2L	13761809	intron	TM9SF4 +	chr2L	13762376	intron	TM9SF4 +	chr2L	13762943	intron	TM9SF4 +	chr2L_5_13760001	chr2L_13760001	RAL-732
238	chr2L	13853089	13853117	chr2L	13862239	13862267	roo	9	9150	4.5	2.0	3.2	2.1	9178	chr2L	13853089	intron	CenG1A +	chr2L	13857678	intron	CenG1A +	chr2L	13862267	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-732
258	chr2L	14803889	14803913	chr2L	14809092	14809116	copia	7	5203	2.0	3.5	2.8	1.8	5227	chr2L	14803889	intergenic	not near genes	chr2L	14806502	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_7_14805001	chr2L_14805001	RAL-732
261	chr2L	14889953	14889983	chr2L	14890377	14890407	jockey	8	424	3.5	3.0	3.2	1.9	454	chr2L	14889953	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890407	intergenic	not near genes	chr2L_8_14890001	chr2L_14890001	RAL-732
262	chr2L	14984386	14984392	chr2L	14991987	14991994	opus	4	7602	2.5	2.5	2.5	1.1	7608	chr2L	14984386	intron	mol -	chr2L	14988190	intron	mol -	chr2L	14991994	intron	mol -	chr2L_4_14985001	chr2L_14985001	RAL-732
270	chr2L	15586411	15586440	chr2L	15593463	15593492	297	7	7052	2.0	0.0	1.0	3.5	7081	chr2L	15586411	intergenic	not near genes	chr2L	15589952	intergenic	not near genes	chr2L	15593492	intergenic	not near genes	chr2L_7_15585001	chr2L_15585001	RAL-732
278	chr2L	15956025	15956054	chr2L	15957491	15957521	hobo	11	1467	6.5	2.5	4.5	2.0	1496	chr2L	15956025	intron	beat-Ib -	chr2L	15956773	intron	beat-Ib -	chr2L	15957521	intron	beat-Ib -	chr2L_11_15955001	chr2L_15955001	RAL-732
283	chr2L	16071771	16071771	chr2L	16217660	16217664	copia	24	145889	13.0	12.5	12.8	1.7	145893	chr2L	16071771	intron	beat-Ia +	chr2L	16144718	intergenic	not near genes	chr2L	16217664	intergenic	not near genes	chr2L_24_16140001	chr2L_16140001	RAL-732
289	chr2L	16071768	16071771	chr2L	16217660	16217660	copia	9	145889	13.0	12.5	12.8	0.7	145892	chr2L	16071768	intron	beat-Ia +	chr2L	16144714	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_9_16140001	chr2L_16140001	RAL-732
294	chr2L	16280253	16280280	chr2L	16281423	16281450	1360	9	1171	5.0	3.0	4.0	1.8	1197	chr2L	16280253	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281450	intron	crp -	chr2L_9_16280001	chr2L_16280001	RAL-732
305	chr2L	16958102	16958120	chr2L	16962889	16962908	Doc	4	4788	2.5	1.5	2.0	1.3	4806	chr2L	16958102	intergenic	not near genes	chr2L	16960505	intergenic	not near genes	chr2L	16962908	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	RAL-732
311	chr2L	17199159	17199193	chr2L	17200626	17200660	hobo	7	1467	2.5	2.0	2.2	2.2	1501	chr2L	17199159	intron	beat-IIIc -	chr2L	17199910	intron	beat-IIIc -	chr2L	17200660	intron	beat-IIIc -	chr2L_7_17195001	chr2L_17195001	RAL-732
314	chr2L	17273197	17273222	chr2L	17277980	17278005	F-element	4	4783	4.5	1.5	3.0	1.0	4808	chr2L	17273197	intergenic	not near genes	chr2L	17275601	intergenic	not near genes	chr2L	17278005	intergenic	not near genes	chr2L_4_17275001	chr2L_17275001	RAL-732
315	chr2L	17432023	17432049	chr2L	17432130	17432156	1360	5	107	0.0	0.5	0.2	4.2	133	chr2L	17432023	intron	Dif -	chr2L	17432090	intron	Dif -	chr2L	17432156	intron	Dif -	chr2L_5_17430001	chr2L_17430001	RAL-732
320	chr2L	17819926	17819956	chr2L	17825129	17825159	copia	6	5203	0.0	2.5	1.2	2.7	5233	chr2L	17819926	intron	CadN2 -	chr2L	17822542	intron	CadN2 -	chr2L	17825159	intron	CadN2 -	chr2L_6_17820001	chr2L_17820001	RAL-732
323	chr2L	17951946	17951978	chr2L	17953413	17953445	hobo	6	1467	2.0	4.0	3.0	1.5	1499	chr2L	17951946	intergenic	CR44398 -,CR44397 -	chr2L	17952696	intergenic	not near genes	chr2L	17953445	intergenic	not near genes	chr2L_6_17950001	chr2L_17950001	RAL-732
324	chr2L	18051884	18051907	chr2L	18061031	18061054	roo	7	9147	1.5	3.5	2.5	2.0	9170	chr2L	18051884	intron	rdo +	chr2L	18056469	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-732
333	chr2L	18408028	18408048	chr2L	18412812	18412832	Doc	6	4784	1.0	0.0	0.5	4.0	4804	chr2L	18408028	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412832	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-732
344	chr2L	19147376	19147400	chr2L	19154411	19154435	297	6	7035	2.0	2.0	2.0	2.0	7059	chr2L	19147376	intron	brat +	chr2L	19150906	intron	brat +	chr2L	19154435	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-732
347	chr2L	19345014	19345047	chr2L	19357222	19357256	blood	7	12209	1.0	2.5	1.8	2.5	12242	chr2L	19345014	intron	dnt -	chr2L	19351135	intron	dnt -	chr2L	19357256	intron	dnt -	chr2L_7_19350001	chr2L_19350001	RAL-732
358	chr2L	19620093	19620122	chr2L	19621082	19621111	jockey	13	989	4.5	5.5	5.0	2.2	1018	chr2L	19620093	intron	Lar +	chr2L	19620602	intron	Lar +	chr2L	19621111	intron	Lar +	chr2L_13_19620001	chr2L_19620001	RAL-732
359	chr2L	19652576	19652597	chr2L	19674010	19674031	opus	6	21434	6.0	2.0	4.0	1.2	21455	chr2L	19652576	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674031	intron	Lar +	chr2L_6_19660001	chr2L_19660001	RAL-732
361	chr2L	19703536	19703566	chr2L	19712672	19712702	roo	9	9136	2.5	3.0	2.8	2.4	9166	chr2L	19703536	intron	Lar +	chr2L	19708119	intron	Lar +	chr2L	19712702	intron	Lar +	chr2L_9_19705001	chr2L_19705001	RAL-732
362	chr2L	19762815	19762838	chr2L	19763057	19763080	pogo	5	242	2.5	2.0	2.2	1.6	265	chr2L	19762815	intron	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763080	intron	fbp -	chr2L_5_19760001	chr2L_19760001	RAL-732
367	chr2L	20005889	20005900	chr2L	20010964	20010976	flea	5	5076	2.5	5.5	4.0	1.0	5087	chr2L	20005889	intron	CG43861 -	chr2L	20008432	intron	CG43861 -	chr2L	20010976	intron	CG43861 -	chr2L_5_20005001	chr2L_20005001	RAL-732
369	chr2L	20272118	20272137	chr2L	20282829	20282848	copia	6	10711	4.0	4.5	4.2	1.2	10730	chr2L	20272118	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282848	intergenic	not near genes	chr2L_6_20275001	chr2L_20275001	RAL-732
371	chr2L	20303161	20303188	chr2L	20310628	20310655	blood	4	7468	0.0	1.0	0.5	2.7	7494	chr2L	20303161	intergenic	not near genes	chr2L	20306908	intergenic	not near genes	chr2L	20310655	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-732
376	chr2L	20576217	20576247	chr2L	20583685	20583715	blood	11	7468	3.0	2.0	2.5	3.1	7498	chr2L	20576217	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583715	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RAL-732
379	chr2L	20835814	20835836	chr2L	20836531	20836553	Quasimodo	7	717	3.0	2.0	2.5	2.0	739	chr2L	20835814	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836553	intergenic	Spn38F -	chr2L_7_20835001	chr2L_20835001	RAL-732
380	chr2L	20901485	20901487	chr2L	20902649	20902651	1360	4	1164	0.0	6.0	3.0	1.0	1166	chr2L	20901485	intron,intron	CG43739 -,sky -	chr2L	20902068	intron,intron	CG43739 -,sky -	chr2L	20902651	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-732
383	chr2L	20976660	20976670	chr2L	20981475	20981485	X-element	4	4815	4.0	4.5	4.2	0.8	4825	chr2L	20976660	intron	CG42238 -	chr2L	20979072	intron	CG42238 -	chr2L	20981485	intron	CG42238 -	chr2L_4_20975001	chr2L_20975001	RAL-732
387	chr2L	21020273	21020308	chr2L	21023950	21023985	NOF	6	3677	3.0	2.0	2.5	1.7	3712	chr2L	21020273	intron	CG42238 -	chr2L	21022129	intron	CG42238 -	chr2L	21023985	intron	CG42238 -	chr2L_6_21020001	chr2L_21020001	RAL-732
388	chr2L	21041136	21041168	chr2L	21049396	21049429	Tirant	7	8261	4.0	2.5	3.2	1.7	8293	chr2L	21041136	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049429	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	RAL-732
392	chr2L	21597029	21597059	chr2L	21604773	21604803	roo	4	7744	1.5	1.0	1.2	1.8	7774	chr2L	21597029	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604803	intergenic	not near genes	chr2L_4_21600001	chr2L_21600001	RAL-732
393	chr2L	21653193	21653225	chr2L	21656497	21656529	invader4	5	3304	0.5	1.0	0.8	2.8	3336	chr2L	21653193	intergenic	not near genes	chr2L	21654861	intergenic	not near genes	chr2L	21656529	intergenic	not near genes	chr2L_5_21650001	chr2L_21650001	RAL-732
396	chr2L	21981693	21981714	chr2L	21990858	21990879	roo	9	9165	1.0	1.0	1.0	4.5	9186	chr2L	21981693	exon	CG2528 -	chr2L	21986286	intron	CG2528 -	chr2L	21990879	exon	CG2528 -	chr2L_9_21985001	chr2L_21985001	RAL-732
399	chr2L	22258612	22258628	chr2L	22260735	22260752	G6	6	2124	6.5	2.5	4.5	1.1	2140	chr2L	22258612	intergenic	Tif-IA +	chr2L	22259682	intergenic	not near genes	chr2L	22260752	intergenic	not near genes	chr2L_6_22255001	chr2L_22255001	RAL-732
402	chr2L	22548921	22548941	chr2L	22550146	22550166	1360	6	1225	0.0	2.5	1.2	2.7	1245	chr2L	22548921	intergenic	CG17490 +	chr2L	22549544	intergenic	not near genes	chr2L	22550166	intergenic	CG17493 +	chr2L_6_22545001	chr2L_22545001	RAL-732
403	chr2L	22581973	22581997	chr2L	22583762	22583786	S-element	4	1789	1.5	0.5	1.0	2.0	1813	chr2L	22581973	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583786	intron	CG17494 +	chr2L_4_22580001	chr2L_22580001	RAL-732
405	chr2L	22679803	22679828	chr2L	22684574	22684600	F-element	5	4772	1.0	2.5	1.8	1.8	4797	chr2L	22679803	intron	CG40006 -	chr2L	22682202	intron	CG40006 -	chr2L	22684600	intron	CG40006 -	chr2L_5_22680001	chr2L_22680001	RAL-732
407	chr2R	529325	529354	chr2R	537950	537979	Max-element	10	8625	1.5	2.5	2.0	3.3	8654	chr2R	529325	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537979	intron	CG40378 +	chr2R_10_530001	chr2R_530001	RAL-732
408	chr2R	552754	552783	chr2R	553970	554000	1360	7	1218	1.0	2.0	1.5	2.8	1246	chr2R	552754	intron	CG40378 +	chr2R	553377	intron	CG40378 +	chr2R	554000	intron	CG40378 +	chr2R_7_550001	chr2R_550001	RAL-732
414	chr2R	2498989	2499012	chr2R	2508136	2508159	roo	4	9147	2.0	3.5	2.8	1.1	9170	chr2R	2498989	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508159	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	RAL-732
416	chr2R	3144095	3144106	chr2R	3393373	3393384	Doc	4	249278	12.0	3.0	7.5	0.5	249289	chr2R	3144095	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393384	intergenic	not near genes	chr2R_4_3265001	chr2R_3265001	RAL-732
421	chr2R	4622951	4622987	chr2R	4624110	4624146	1360	10	1158	2.5	1.5	2.0	3.3	1195	chr2R	4622951	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624146	intergenic	not near genes	chr2R_10_4620001	chr2R_4620001	RAL-732
422	chr2R	4750342	4750377	chr2R	4751499	4751534	1360	4	1156	0.5	1.0	0.8	2.2	1192	chr2R	4750342	intron	conu +	chr2R	4750938	intron	conu +	chr2R	4751534	intron	conu +	chr2R_4_4750001	chr2R_4750001	RAL-732
431	chr2R	5417998	5418026	chr2R	5420630	5420658	Burdock	5	2632	2.0	2.0	2.0	1.7	2660	chr2R	5417998	intron	laccase2 +	chr2R	5419328	intron	laccase2 +	chr2R	5420658	intron	laccase2 +	chr2R_5_5415001	chr2R_5415001	RAL-732
437	chr2R	5543199	5543223	chr2R	5547283	5547307	invader1	4	4084	0.0	2.0	1.0	2.0	4108	chr2R	5543199	intron	CG30438 +	chr2R	5545253	intron	CG30438 +	chr2R	5547307	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	RAL-732
440	chr2R	5869276	5869306	chr2R	5874352	5874382	flea	4	5076	1.5	3.5	2.5	1.1	5106	chr2R	5869276	intergenic	not near genes	chr2R	5871829	intergenic	not near genes	chr2R	5874382	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-732
444	chr2R	6096726	6096751	chr2R	6101924	6101942	BS	11	5197	3.0	3.0	3.0	2.8	5216	chr2R	6096726	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101942	intron	EcR -	chr2R_11_6095001	chr2R_6095001	RAL-732
449	chr2R	6579782	6579801	chr2R	6584867	6584887	flea	5	5086	3.0	4.0	3.5	1.1	5105	chr2R	6579782	intron	jing +	chr2R	6582334	intron	jing +	chr2R	6584887	intron	jing +	chr2R_5_6580001	chr2R_6580001	RAL-732
462	chr2R	7235818	7235850	chr2R	7240910	7240942	jockey	11	5092	4.0	2.5	3.2	2.6	5124	chr2R	7235818	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240942	intergenic	not near genes	chr2R_11_7235001	chr2R_7235001	RAL-732
466	chr2R	7434891	7434904	chr2R	7439192	7439205	Juan	5	4301	3.5	2.5	3.0	1.2	4314	chr2R	7434891	intergenic	so +	chr2R	7437048	intergenic	not near genes	chr2R	7439205	intergenic	not near genes	chr2R_5_7435001	chr2R_7435001	RAL-732
468	chr2R	7608408	7608435	chr2R	7613611	7613638	I-element	8	5203	3.5	0.0	1.8	2.9	5230	chr2R	7608408	intron	CG1358 -	chr2R	7611023	intron	CG1358 -	chr2R	7613638	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-732
471	chr2R	7815675	7815695	chr2R	7822144	7822163	Burdock	6	6469	3.5	1.0	2.2	1.9	6488	chr2R	7815675	intergenic	CG1882 +	chr2R	7818919	intergenic	not near genes	chr2R	7822163	3` UTR	cathD -	chr2R_6_7815001	chr2R_7815001	RAL-732
472	chr2R	7869194	7869221	chr2R	7873980	7874005	Doc	7	4786	3.5	1.5	2.5	2.0	4811	chr2R	7869194	intron	Dgk -	chr2R	7871600	intron	Dgk -	chr2R	7874005	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	RAL-732
482	chr2R	8330862	8330894	chr2R	8331348	8331380	roo	7	486	2.5	2.0	2.2	2.2	518	chr2R	8330862	intron	pdm3 +	chr2R	8331121	intron	pdm3 +	chr2R	8331380	intron	pdm3 +	chr2R_7_8330001	chr2R_8330001	RAL-732
485	chr2R	8398221	8398241	chr2R	8403002	8403022	Doc	8	4780	1.0	1.0	1.0	4.0	4801	chr2R	8398221	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403022	intron	CG2121 -	chr2R_8_8400001	chr2R_8400001	RAL-732
493	chr2R	8722780	8722791	chr2R	8723020	8723031	pogo	4	240	0.5	2.5	1.5	1.6	251	chr2R	8722780	intron	CG14767 -	chr2R	8722906	intron	CG14767 -	chr2R	8723031	intron	CG14767 -	chr2R_4_8720001	chr2R_8720001	RAL-732
494	chr2R	8777939	8777943	chr2R	8784143	8784147	diver	4	6204	0.0	5.0	2.5	1.1	6208	chr2R	8777939	intergenic	not near genes	chr2R	8781043	intergenic	not near genes	chr2R	8784147	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-732
503	chr2R	9151301	9151333	chr2R	9157771	9157803	Burdock	5	6470	3.5	0.5	2.0	1.7	6502	chr2R	9151301	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157803	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	RAL-732
507	chr2R	9480075	9480096	chr2R	9490606	9490627	roo	5	10531	0.5	1.0	0.8	2.8	10552	chr2R	9480075	intergenic	not near genes	chr2R	9485351	intergenic	not near genes	chr2R	9490627	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-732
514	chr2R	10176877	10176897	chr2R	10186044	10186064	roo	5	9167	2.0	0.5	1.2	2.3	9187	chr2R	10176877	intron	KCNQ -	chr2R	10181470	intron	KCNQ -	chr2R	10186064	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-732
521	chr2R	10585573	10585590	chr2R	10594154	10594173	Tirant	5	8583	1.5	2.5	2.0	1.7	8600	chr2R	10585573	intron	psq +	chr2R	10589873	intron	psq +	chr2R	10594173	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-732
530	chr2R	10948025	10948047	chr2R	10955576	10955596	17.6	5	7550	0.0	0.5	0.2	4.2	7571	chr2R	10948025	intergenic	not near genes	chr2R	10951810	intergenic	not near genes	chr2R	10955596	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	RAL-732
532	chr2R	10979656	10979687	chr2R	10980126	10980157	297	7	470	1.5	2.0	1.8	2.5	501	chr2R	10979656	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980157	intergenic	not near genes	chr2R_7_10975001	chr2R_10975001	RAL-732
534	chr2R	11009812	11009848	chr2R	11018986	11019022	roo	4	9174	1.0	1.5	1.2	1.8	9210	chr2R	11009812	intron	luna -	chr2R	11014417	intron	luna -	chr2R	11019022	intron	luna -	chr2R_4_11010001	chr2R_11010001	RAL-732
535	chr2R	11019881	11019904	chr2R	11024947	11024970	jockey	4	5066	3.0	1.5	2.2	1.2	5089	chr2R	11019881	intron	luna -	chr2R	11022426	intron	luna -	chr2R	11024970	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-732
541	chr2R	11207822	11207837	chr2R	11208015	11208028	BS	6	193	3.5	1.5	2.5	1.7	206	chr2R	11207822	intron	shn +	chr2R	11207925	intron	shn +	chr2R	11208028	intron	shn +	chr2R_6_11205001	chr2R_11205001	RAL-732
544	chr2R	11415523	11415550	chr2R	11418672	11418699	opus	6	3149	3.5	4.5	4.0	1.2	3176	chr2R	11415523	intron	Drip -	chr2R	11417111	intron	Drip -	chr2R	11418699	intron	Drip -	chr2R_6_11415001	chr2R_11415001	RAL-732
545	chr2R	11472647	11472679	chr2R	11473844	11473876	pogo	13	1197	6.0	2.0	4.0	2.6	1229	chr2R	11472647	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473876	intergenic	not near genes	chr2R_13_11470001	chr2R_11470001	RAL-732
553	chr2R	12481143	12481169	chr2R	12482947	12482972	roo	10	1803	2.5	5.0	3.8	2.1	1829	chr2R	12481143	exon	Dh44-R2 +	chr2R	12482058	intron	Dh44-R2 +	chr2R	12482972	intron	Dh44-R2 +	chr2R_10_12480001	chr2R_12480001	RAL-732
557	chr2R	12707527	12707538	chr2R	12715893	12715904	roo	4	8366	0.0	1.5	0.8	2.2	8377	chr2R	12707527	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715904	intron	CG42663 +	chr2R_4_12710001	chr2R_12710001	RAL-732
559	chr2R	12789299	12789326	chr2R	12797662	12797689	roo	7	8363	2.0	2.5	2.2	2.2	8390	chr2R	12789299	intron,3` UTR	sca +,CR45137 -	chr2R	12793494	intron,intron	sca +,CR45137 -	chr2R	12797689	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	RAL-732
563	chr2R	13136845	13136868	chr2R	13141643	13141665	Doc	11	4798	5.5	5.0	5.2	1.8	4820	chr2R	13136845	exon	Cap-G +	chr2R	13139255	intron	Cap-G +	chr2R	13141665	intron	Cap-G +	chr2R_11_13135001	chr2R_13135001	RAL-732
575	chr2R	13580497	13580532	chr2R	13580847	13580881	jockey	10	350	0.5	2.0	1.2	4.5	384	chr2R	13580497	3` UTR	CG6191 -	chr2R	13580689	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580881	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_10_13580001	chr2R_13580001	RAL-732
581	chr2R	13905627	13905633	chr2R	13907608	13907615	Rt1a	4	1982	0.0	4.0	2.0	1.3	1988	chr2R	13905627	intron	shot -	chr2R	13906621	intron	shot -	chr2R	13907615	intron	shot -	chr2R_4_13905001	chr2R_13905001	RAL-732
587	chr2R	14394231	14394247	chr2R	14399020	14399036	Doc	5	4789	4.5	1.0	2.8	1.3	4805	chr2R	14394231	intergenic	not near genes	chr2R	14396634	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-732
590	chr2R	14467302	14467323	chr2R	14476454	14476475	roo	13	9152	2.5	7.5	5.0	2.2	9173	chr2R	14467302	intergenic	not near genes	chr2R	14471888	intergenic	not near genes	chr2R	14476475	5` UTR	CR44462 +	chr2R_13_14470001	chr2R_14470001	RAL-732
591	chr2R	14497387	14497422	chr2R	14498553	14498588	1360	7	1166	0.5	2.5	1.5	2.8	1201	chr2R	14497387	3` UTR	Cpsf160 -	chr2R	14497988	intron	Cpsf160 -	chr2R	14498588	3` UTR	Cpsf160 -	chr2R_7_14495001	chr2R_14495001	RAL-732
597	chr2R	14889207	14889239	chr2R	14897815	14897844	Max-element	5	8607	3.0	0.0	1.5	2.0	8637	chr2R	14889207	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-732
599	chr2R	15004731	15004752	chr2R	15005060	15005080	jockey	9	329	5.5	2.0	3.8	1.9	349	chr2R	15004731	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005080	intergenic	not near genes	chr2R_9_15000001	chr2R_15000001	RAL-732
600	chr2R	15015457	15015487	chr2R	15022881	15022911	mdg1	13	7424	3.0	3.0	3.0	3.2	7454	chr2R	15015457	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022911	intron	hbs +	chr2R_13_15015001	chr2R_15015001	RAL-732
602	chr2R	15084982	15085006	chr2R	15092030	15092055	297	7	7049	2.5	2.5	2.5	2.0	7073	chr2R	15084982	intergenic	not near genes	chr2R	15088518	intergenic	not near genes	chr2R	15092055	5` UTR	CR44457 +	chr2R_7_15085001	chr2R_15085001	RAL-732
604	chr2R	15119317	15119350	chr2R	15127798	15127831	Tirant	8	8480	2.0	3.0	2.5	2.3	8514	chr2R	15119317	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127831	intron	chn +	chr2R_8_15120001	chr2R_15120001	RAL-732
625	chr2R	17147242	17147270	chr2R	17152273	17152301	jockey	12	5031	0.5	6.0	3.2	2.9	5059	chr2R	17147242	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152301	intergenic	not near genes	chr2R_12_17145001	chr2R_17145001	RAL-732
629	chr2R	17176352	17176389	chr2R	17182542	17182579	diver	10	6190	1.5	2.0	1.8	3.6	6227	chr2R	17176352	intergenic	not near genes	chr2R	17179466	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_10_17175001	chr2R_17175001	RAL-732
630	chr2R	17236507	17236532	chr2R	17241710	17241736	copia	5	5204	2.0	3.5	2.8	1.3	5229	chr2R	17236507	intron	mbl +	chr2R	17239122	intron	mbl +	chr2R	17241736	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-732
632	chr2R	17277238	17277243	chr2R	17277646	17277651	jockey	4	408	2.5	4.5	3.5	0.9	413	chr2R	17277238	intron	mbl +	chr2R	17277444	intron	mbl +	chr2R	17277651	intron	mbl +	chr2R_4_17275001	chr2R_17275001	RAL-732
637	chr2R	17784024	17784055	chr2R	17784265	17784296	pogo	9	241	4.5	5.5	5.0	1.5	272	chr2R	17784024	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784296	intergenic	mir-31a -	chr2R_9_17780001	chr2R_17780001	RAL-732
643	chr2R	18045667	18045702	chr2R	18046019	18046054	jockey	7	352	2.0	2.5	2.2	2.2	387	chr2R	18045667	intergenic	not near genes	chr2R	18045860	intergenic	not near genes	chr2R	18046054	intergenic	CG5767 -	chr2R_7_18045001	chr2R_18045001	RAL-732
645	chr2R	18358403	18358420	chr2R	18372615	18372632	roo	7	14212	0.5	3.0	1.8	2.5	14229	chr2R	18358403	intergenic	not near genes	chr2R	18365518	intergenic	not near genes	chr2R	18372632	intergenic	not near genes	chr2R_7_18365001	chr2R_18365001	RAL-732
650	chr2R	18575803	18575827	chr2R	18581991	18582015	3S18	4	6188	1.5	4.0	2.8	1.1	6212	chr2R	18575803	intron	GEFmeso -	chr2R	18578909	intron	GEFmeso -	chr2R	18582015	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-732
651	chr2R	18590869	18590897	chr2R	18600021	18600049	roo	8	9152	3.0	3.5	3.2	1.9	9180	chr2R	18590869	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600049	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-732
667	chr2R	19715835	19715853	chr2R	19723324	19723341	blood	7	7488	1.5	2.5	2.0	2.3	7506	chr2R	19715835	intergenic	not near genes	chr2R	19719588	intergenic	not near genes	chr2R	19723341	intergenic	not near genes	chr2R_7_19715001	chr2R_19715001	RAL-732
668	chr2R	19776602	19776630	chr2R	19779921	19779953	jockey	5	3322	3.0	4.5	3.8	1.0	3351	chr2R	19776602	intergenic	not near genes	chr2R	19778278	intergenic	not near genes	chr2R	19779953	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-732
669	chr2R	19914844	19914866	chr2R	19922256	19922278	mdg1	6	7412	4.5	1.5	3.0	1.5	7434	chr2R	19914844	intergenic	not near genes	chr2R	19918561	intergenic	not near genes	chr2R	19922278	intergenic	not near genes	chr2R_6_19915001	chr2R_19915001	RAL-732
671	chr2R	19957430	19957451	chr2R	19962632	19962653	copia	4	5202	2.0	0.5	1.2	1.8	5223	chr2R	19957430	intergenic	CG44623 +	chr2R	19960042	intergenic	not near genes	chr2R	19962653	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-732
681	chr2R	20739446	20739476	chr2R	20744214	20744244	F-element	11	4768	3.5	5.5	4.5	2.0	4798	chr2R	20739446	intron	dpr +	chr2R	20741845	intron	dpr +	chr2R	20744244	intron	dpr +	chr2R_11_20740001	chr2R_20740001	RAL-732
686	chr2R	21151118	21151146	chr2R	21153751	21153779	opus	6	2633	1.0	4.0	2.5	1.7	2661	chr2R	21151118	intron	CG30389 -	chr2R	21152448	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_6_21150001	chr2R_21150001	RAL-732
692	chr2R	21753090	21753108	chr2R	21753573	21753593	roo	6	485	2.0	3.5	2.8	1.6	503	chr2R	21753090	intergenic	not near genes	chr2R	21753342	intergenic	not near genes	chr2R	21753593	intergenic	not near genes	chr2R_6_21750001	chr2R_21750001	RAL-732
706	chr2R	22349693	22349719	chr2R	22351477	22351503	jockey	6	1784	4.0	2.5	3.2	1.4	1810	chr2R	22349693	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351503	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-732
707	chr2R	22360383	22360397	chr2R	22360816	22360829	jockey	7	433	4.0	2.5	3.2	1.7	446	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360829	intron	Liprin-gamma -	chr2R_7_22360001	chr2R_22360001	RAL-732
709	chr2R	22525751	22525785	chr2R	22529306	22529340	jockey	8	3555	1.0	4.0	2.5	2.3	3589	chr2R	22525751	intron	px -	chr2R	22527546	intron	px -	chr2R	22529340	intron	px -	chr2R_8_22525001	chr2R_22525001	RAL-732
712	chr2R	22774961	22775000	chr2R	22775380	22775419	jockey	12	419	2.5	1.5	2.0	4.0	458	chr2R	22774961	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775419	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-732
725	chr2R	23402614	23402640	chr2R	23407690	23407716	flea	8	5076	0.5	1.0	0.8	4.4	5102	chr2R	23402614	intergenic	CG3520 -	chr2R	23405165	intergenic	not near genes	chr2R	23407716	intergenic	not near genes	chr2R_8_23405001	chr2R_23405001	RAL-732
728	chr2R	23529575	23529607	chr2R	23537151	23537183	412	10	7576	1.5	3.5	2.5	2.9	7608	chr2R	23529575	intron	bw -	chr2R	23533379	intron	bw -	chr2R	23537183	exon	bw -	chr2R_10_23530001	chr2R_23530001	RAL-732
735	chr2R	23914310	23914331	chr2R	23921934	23921953	412	4	7623	2.0	6.0	4.0	0.8	7643	chr2R	23914310	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921953	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-732
740	chr2R	24147068	24147090	chr2R	24154646	24154668	412	6	7578	5.0	5.0	5.0	1.0	7600	chr2R	24147068	intron	Dat +	chr2R	24150868	intron	Dat +	chr2R	24154668	intron	Dat +	chr2R_6_24150001	chr2R_24150001	RAL-732
741	chr2R	24177234	24177268	chr2R	24184719	24184753	412	9	7485	4.0	2.0	3.0	2.2	7519	chr2R	24177234	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184753	3` UTR	Nop60B +	chr2R_9_24180001	chr2R_24180001	RAL-732
747	chr2R	24353426	24353462	chr2R	24361788	24361824	roo	10	8362	0.5	3.0	1.8	3.6	8398	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357625	intron,intron	bs +,CR44811 -	chr2R	24361824	intron,intron	bs +,CR44811 -	chr2R_10_24355001	chr2R_24355001	RAL-732
751	chr2R	24647587	24647617	chr2R	24655144	24655174	412	7	7557	1.0	4.5	2.8	1.8	7587	chr2R	24647587	intergenic	not near genes	chr2R	24651380	intergenic	not near genes	chr2R	24655174	intergenic	not near genes	chr2R_7_24650001	chr2R_24650001	RAL-732
753	chr2R	24727884	24727915	chr2R	24735392	24735423	mdg1	9	7508	4.0	5.0	4.5	1.6	7539	chr2R	24727884	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735423	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	RAL-732
757	chr2R	24763609	24763642	chr2R	24765585	24765618	G2	23	1975	5.0	4.0	4.5	4.2	2009	chr2R	24763609	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765618	exon	CG3894 +	chr2R_23_24760001	chr2R_24760001	RAL-732
769	chr2R	25141651	25141684	chr2R	25159341	25159374	roo	10	17690	4.0	1.0	2.5	2.9	17723	chr2R	25141651	intergenic	not near genes	chr2R	25150512	intergenic	not near genes	chr2R	25159374	intergenic	not near genes	chr2R_10_25150001	chr2R_25150001	RAL-732
772	chr3L	110219	110243	chr3L	119385	119410	roo	7	9167	1.5	2.5	2.0	2.3	9191	chr3L	110219	intergenic	not near genes	chr3L	114814	intergenic	not near genes	chr3L	119410	intergenic	not near genes	chr3L_7_110001	chr3L_110001	RAL-732
777	chr3L	402688	402718	chr3L	409741	409770	297	14	7053	4.0	4.5	4.2	2.7	7082	chr3L	402688	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409770	intergenic	not near genes	chr3L_14_405001	chr3L_405001	RAL-732
781	chr3L	858014	858026	chr3L	866494	866507	Tirant	5	8480	3.0	4.5	3.8	1.0	8493	chr3L	858014	intergenic	not near genes	chr3L	862260	intergenic	not near genes	chr3L	866507	5` UTR	CG12502 +	chr3L_5_860001	chr3L_860001	RAL-732
783	chr3L	925176	925210	chr3L	932602	932636	mdg1	10	7426	2.5	3.0	2.8	2.6	7460	chr3L	925176	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_10_925001	chr3L_925001	RAL-732
785	chr3L	939771	939802	chr3L	940892	940923	jockey	10	1121	5.0	2.5	3.8	2.1	1152	chr3L	939771	intron	Glut1 +	chr3L	940347	intron	Glut1 +	chr3L	940923	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-732
790	chr3L	1047359	1047384	chr3L	1055171	1055196	412	4	7812	0.5	3.0	1.8	1.4	7837	chr3L	1047359	intron	bab1 -	chr3L	1051278	intron	bab1 -	chr3L	1055196	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-732
791	chr3L	1154131	1154158	chr3L	1163280	1163307	roo	5	9150	4.0	2.0	3.0	1.2	9176	chr3L	1154131	intron	bab2 -	chr3L	1158719	intron	bab2 -	chr3L	1163307	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-732
793	chr3L	1219598	1219616	chr3L	1227331	1227349	412	7	7733	3.0	4.5	3.8	1.5	7751	chr3L	1219598	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227349	intron	mwh +	chr3L_7_1220001	chr3L_1220001	RAL-732
802	chr3L	1740852	1740882	chr3L	1741097	1741127	pogo	8	245	4.0	1.0	2.5	2.3	275	chr3L	1740852	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741127	intron	Gk +	chr3L_8_1740001	chr3L_1740001	RAL-732
812	chr3L	2447502	2447535	chr3L	2456658	2456691	roo	8	9156	3.5	2.0	2.8	2.1	9189	chr3L	2447502	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456691	intron	CG45186 +	chr3L_8_2450001	chr3L_2450001	RAL-732
824	chr3L	2927843	2927864	chr3L	2936119	2936139	Tirant	8	8277	1.0	2.0	1.5	3.2	8296	chr3L	2927843	intron	Shab +	chr3L	2931991	intron	Shab +	chr3L	2936139	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-732
826	chr3L	3051745	3051752	chr3L	3051987	3051994	pogo	5	242	3.0	0.0	1.5	2.0	249	chr3L	3051745	3` UTR	CG32485 +	chr3L	3051870	intergenic	CG32485 +	chr3L	3051994	intergenic	CG32485 +	chr3L_5_3050001	chr3L_3050001	RAL-732
827	chr3L	3061283	3061308	chr3L	3069866	3069890	Tirant	5	8583	2.5	2.0	2.2	1.6	8607	chr3L	3061283	intron	CG32486 -	chr3L	3065586	intron	CG32486 -	chr3L	3069890	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	RAL-732
830	chr3L	3281442	3281472	chr3L	3281938	3281968	Doc	15	496	3.5	6.0	4.8	2.6	526	chr3L	3281442	intron	CG12017 +	chr3L	3281705	intron	CG12017 +	chr3L	3281968	intron	CG12017 +	chr3L_15_3280001	chr3L_3280001	RAL-732
832	chr3L	3475076	3475104	chr3L	3475520	3475548	jockey	8	444	4.0	1.0	2.5	2.3	472	chr3L	3475076	intron	CG42324 +	chr3L	3475312	intron	CG42324 +	chr3L	3475548	intron	CG42324 +	chr3L_8_3475001	chr3L_3475001	RAL-732
835	chr3L	3601298	3601320	chr3L	3606609	3606630	copia	6	5310	5.5	2.5	4.0	1.2	5332	chr3L	3601298	intron	Eip63E +	chr3L	3603964	intron	Eip63E +	chr3L	3606630	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-732
852	chr3L	4901136	4901156	chr3L	4907326	4907346	diver	8	6190	4.5	0.5	2.5	2.3	6210	chr3L	4901136	intergenic	CG13704 +	chr3L	4904241	intergenic	not near genes	chr3L	4907346	intergenic	not near genes	chr3L_8_4900001	chr3L_4900001	RAL-732
854	chr3L	5034160	5034190	chr3L	5043312	5043342	roo	7	9152	3.0	0.5	1.8	2.5	9182	chr3L	5034160	intron	Con -	chr3L	5038751	intron	Con -	chr3L	5043342	intron	Con -	chr3L_7_5035001	chr3L_5035001	RAL-732
860	chr3L	5299155	5299181	chr3L	5306591	5306617	Quasimodo	5	7436	0.5	0.5	0.5	3.3	7462	chr3L	5299155	intergenic	not near genes	chr3L	5302886	intergenic	not near genes	chr3L	5306617	intergenic	not near genes	chr3L_5_5300001	chr3L_5300001	RAL-732
865	chr3L	5537725	5537750	chr3L	5538067	5538092	jockey	4	342	1.0	4.0	2.5	1.1	367	chr3L	5537725	intergenic	not near genes	chr3L	5537908	intergenic	not near genes	chr3L	5538092	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-732
868	chr3L	5910044	5910062	chr3L	5910285	5910303	pogo	5	241	1.0	6.5	3.8	1.0	259	chr3L	5910044	intron	CG13288 +	chr3L	5910174	intron	CG13288 +	chr3L	5910303	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-732
869	chr3L	5926316	5926343	chr3L	5926506	5926533	BS	7	190	3.5	3.0	3.2	1.7	217	chr3L	5926316	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926533	intron	Vap-33B +	chr3L_7_5925001	chr3L_5925001	RAL-732
872	chr3L	6001680	6001709	chr3L	6004380	6004409	jockey	7	2700	2.0	1.0	1.5	2.8	2729	chr3L	6001680	intron	PVRAP +	chr3L	6003044	intron	PVRAP +	chr3L	6004409	intron	PVRAP +	chr3L_7_6000001	chr3L_6000001	RAL-732
873	chr3L	6040368	6040394	chr3L	6042721	6042750	Doc	8	2356	1.0	2.0	1.5	3.2	2382	chr3L	6040368	intergenic	Jon65Aiv +	chr3L	6041559	intergenic	not near genes	chr3L	6042750	intergenic	not near genes	chr3L_8_6040001	chr3L_6040001	RAL-732
877	chr3L	6220915	6220946	chr3L	6230067	6230098	roo	8	9152	5.5	1.5	3.5	1.8	9183	chr3L	6220915	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230098	intergenic	not near genes	chr3L_8_6225001	chr3L_6225001	RAL-732
878	chr3L	6335011	6335030	chr3L	6335482	6335501	297	7	471	2.5	3.5	3.0	1.8	490	chr3L	6335011	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335501	intron	CG13300 -	chr3L_7_6335001	chr3L_6335001	RAL-732
879	chr3L	6405665	6405690	chr3L	6432129	6432154	roo	8	26464	3.5	0.5	2.0	2.7	26489	chr3L	6405665	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432154	intron	CG42747 +	chr3L_8_6415001	chr3L_6415001	RAL-732
888	chr3L	6855920	6855954	chr3L	6860703	6860738	Doc	4	4783	2.0	1.5	1.8	1.4	4818	chr3L	6855920	intergenic	not near genes	chr3L	6858329	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	RAL-732
890	chr3L	6887520	6887547	chr3L	6895012	6895039	roo	5	7492	2.0	1.0	1.5	2.0	7519	chr3L	6887520	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895039	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-732
898	chr3L	7377315	7377348	chr3L	7380420	7380453	297	6	3105	0.5	1.0	0.8	3.3	3138	chr3L	7377315	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380453	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	RAL-732
902	chr3L	7498758	7498791	chr3L	7503535	7503568	F-element	7	4777	2.5	1.0	1.8	2.5	4810	chr3L	7498758	5` UTR	CG8539 -	chr3L	7501163	intergenic	not near genes	chr3L	7503568	intergenic	not near genes	chr3L_7_7500001	chr3L_7500001	RAL-732
912	chr3L	7793711	7793738	chr3L	7800763	7800790	297	7	7052	1.5	2.5	2.0	2.3	7079	chr3L	7793711	intron	CG32369 -	chr3L	7797250	intron	CG32369 -	chr3L	7800790	intron	CG32369 -	chr3L_7_7795001	chr3L_7795001	RAL-732
916	chr3L	7886526	7886546	chr3L	7889044	7889064	Stalker4	9	2518	0.0	4.5	2.2	2.8	2538	chr3L	7886526	intron	CG32365 +	chr3L	7887795	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_9_7885001	chr3L_7885001	RAL-732
918	chr3L	7985365	7985393	chr3L	7987693	7987721	NOF	7	2328	2.0	1.0	1.5	2.8	2356	chr3L	7985365	intron	nmo +	chr3L	7986543	intron	nmo +	chr3L	7987721	intron	nmo +	chr3L_7_7985001	chr3L_7985001	RAL-732
924	chr3L	8481782	8481804	chr3L	8490940	8490962	roo	5	9158	2.0	1.5	1.8	1.8	9180	chr3L	8481782	intron	CG43163 -	chr3L	8486372	intron	CG43163 -	chr3L	8490962	intron	CG43163 -	chr3L_5_8485001	chr3L_8485001	RAL-732
926	chr3L	8791280	8791304	chr3L	8796700	8796724	I-element	8	5420	6.0	3.5	4.8	1.4	5444	chr3L	8791280	exon	Fhos +	chr3L	8794002	intron	Fhos +	chr3L	8796724	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	RAL-732
932	chr3L	9076932	9076960	chr3L	9084492	9084520	412	11	7560	3.5	4.5	4.0	2.2	7588	chr3L	9076932	exon	Tequila +	chr3L	9080726	intron	Tequila +	chr3L	9084520	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-732
933	chr3L	9130560	9130581	chr3L	9134320	9134342	412	6	3761	3.5	2.0	2.8	1.6	3782	chr3L	9130560	intergenic	bol -	chr3L	9132451	intergenic	not near genes	chr3L	9134342	intergenic	Dhpr +	chr3L_6_9130001	chr3L_9130001	RAL-732
934	chr3L	9164697	9164725	chr3L	9166164	9166192	hobo	10	1467	1.5	0.0	0.8	5.6	1495	chr3L	9164697	intron	Rdl -	chr3L	9165444	intron	Rdl -	chr3L	9166192	intron	Rdl -	chr3L_10_9165001	chr3L_9165001	RAL-732
935	chr3L	9219242	9219275	chr3L	9219914	9219947	jockey	8	672	3.0	2.0	2.5	2.3	705	chr3L	9219242	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219947	intergenic	not near genes	chr3L_8_9215001	chr3L_9215001	RAL-732
938	chr3L	9526488	9526508	chr3L	9528168	9528188	Doc	4	1680	1.5	2.0	1.8	1.4	1700	chr3L	9526488	intergenic	not near genes	chr3L	9527338	intergenic	not near genes	chr3L	9528188	intergenic	not near genes	chr3L_4_9525001	chr3L_9525001	RAL-732
939	chr3L	9533764	9533780	chr3L	9541322	9541340	412	4	7560	3.0	6.5	4.8	0.7	7576	chr3L	9533764	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541340	intergenic	not near genes	chr3L_4_9535001	chr3L_9535001	RAL-732
940	chr3L	9575920	9575932	chr3L	9580998	9581010	jockey	7	5077	3.5	4.0	3.8	1.5	5090	chr3L	9575920	intron	CG42673 +	chr3L	9578465	intron	CG42673 +	chr3L	9581010	intron	CG42673 +	chr3L_7_9575001	chr3L_9575001	RAL-732
945	chr3L	9929677	9929698	chr3L	9938457	9938479	roo	5	8781	1.5	2.5	2.0	1.7	8802	chr3L	9929677	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	RAL-732
950	chr3L	10414943	10414975	chr3L	10417315	10417347	Doc	5	2371	0.5	3.0	1.8	1.8	2404	chr3L	10414943	intergenic	CG12362 +	chr3L	10416145	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-732
961	chr3L	11087068	11087085	chr3L	11088857	11088874	S-element	5	1789	0.0	5.0	2.5	1.4	1806	chr3L	11087068	intron	JIL-1 -	chr3L	11087971	intron	JIL-1 -	chr3L	11088874	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-732
962	chr3L	11105293	11105319	chr3L	11107004	11107030	X-element	6	1711	3.0	2.5	2.8	1.6	1737	chr3L	11105293	intergenic	not near genes	chr3L	11106162	intergenic	not near genes	chr3L	11107030	exon	CG32073 -	chr3L_6_11105001	chr3L_11105001	RAL-732
965	chr3L	11329690	11329717	chr3L	11332895	11332922	jockey	4	3203	3.5	2.0	2.8	1.1	3232	chr3L	11329690	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332922	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-732
968	chr3L	11564790	11564810	chr3L	11572415	11572435	412	8	7625	2.0	5.5	3.8	1.7	7645	chr3L	11564790	exon	CG33267 +	chr3L	11568612	intron	CG33267 +	chr3L	11572435	exon	CG33267 +	chr3L_8_11565001	chr3L_11565001	RAL-732
970	chr3L	11723086	11723113	chr3L	11727881	11727908	Doc	10	4795	2.0	4.0	3.0	2.5	4822	chr3L	11723086	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727908	3` UTR	Bmcp +	chr3L_10_11725001	chr3L_11725001	RAL-732
974	chr3L	11864566	11864585	chr3L	11865860	11865880	pogo	6	1295	0.5	3.0	1.8	2.1	1314	chr3L	11864566	intron	CG44837 -	chr3L	11865223	intron	CG44837 -	chr3L	11865880	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-732
994	chr3L	12874925	12874961	chr3L	12877217	12877253	jockey	6	2292	2.5	1.0	1.8	2.1	2328	chr3L	12874925	intergenic	not near genes	chr3L	12876089	intergenic	not near genes	chr3L	12877253	intergenic	not near genes	chr3L_6_12875001	chr3L_12875001	RAL-732
995	chr3L	12919278	12919305	chr3L	12924749	12924778	Rt1c	8	5472	4.5	1.5	3.0	2.0	5500	chr3L	12919278	intergenic	not near genes	chr3L	12922028	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_8_12920001	chr3L_12920001	RAL-732
998	chr3L	12957790	12957814	chr3L	12962272	12962296	copia	4	4482	2.0	5.0	3.5	0.9	4506	chr3L	12957790	intergenic	not near genes	chr3L	12960043	intergenic	not near genes	chr3L	12962296	intergenic	not near genes	chr3L_4_12960001	chr3L_12960001	RAL-732
1010	chr3L	13525154	13525185	chr3L	13532950	13532981	roo	9	7796	4.0	3.0	3.5	2.0	7827	chr3L	13525154	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532981	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	RAL-732
1017	chr3L	13804546	13804574	chr3L	13822832	13822859	roo	9	18286	2.5	5.0	3.8	1.9	18313	chr3L	13804546	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822859	intergenic	not near genes	chr3L_9_13810001	chr3L_13810001	RAL-732
1023	chr3L	14267384	14267391	chr3L	14271819	14271831	F-element	6	4439	2.5	4.0	3.2	1.4	4447	chr3L	14267384	intergenic	not near genes	chr3L	14269608	intergenic	not near genes	chr3L	14271831	intergenic	not near genes	chr3L_6_14265001	chr3L_14265001	RAL-732
1026	chr3L	14295989	14296007	chr3L	14296475	14296493	roo	5	486	3.0	4.0	3.5	1.1	504	chr3L	14295989	intron	fz +	chr3L	14296241	intron	fz +	chr3L	14296493	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-732
1027	chr3L	14312025	14312049	chr3L	14316838	14316863	X-element	5	4814	1.0	2.0	1.5	2.0	4838	chr3L	14312025	exon	fz +	chr3L	14314444	intron	fz +	chr3L	14316863	intron	fz +	chr3L_5_14310001	chr3L_14310001	RAL-732
1032	chr3L	14468466	14468475	chr3L	14473671	14473681	copia	4	5206	2.5	3.5	3.0	1.0	5215	chr3L	14468466	intron	bbg -	chr3L	14471074	intron	bbg -	chr3L	14473681	intron	bbg -	chr3L_4_14470001	chr3L_14470001	RAL-732
1035	chr3L	14721182	14721209	chr3L	14723025	14723052	Rt1c	8	1842	3.5	2.5	3.0	2.0	1870	chr3L	14721182	intron	ome +	chr3L	14722117	intron	ome +	chr3L	14723052	intron	ome +	chr3L_8_14720001	chr3L_14720001	RAL-732
1036	chr3L	14725599	14725625	chr3L	14728593	14728619	Doc	5	2994	1.0	2.0	1.5	2.0	3020	chr3L	14725599	intron	ome +	chr3L	14727109	intron	ome +	chr3L	14728619	intron	ome +	chr3L_5_14725001	chr3L_14725001	RAL-732
1042	chr3L	15085064	15085082	chr3L	15086230	15086248	1360	5	1166	2.0	3.0	2.5	1.4	1184	chr3L	15085064	intron	cp309 -	chr3L	15085656	intron	cp309 -	chr3L	15086248	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-732
1046	chr3L	15295773	15295801	chr3L	15298614	15298644	gypsy5	5	2843	2.0	1.0	1.5	2.0	2871	chr3L	15295773	intergenic	not near genes	chr3L	15297208	intergenic	not near genes	chr3L	15298644	intergenic	Best4 +	chr3L_5_15295001	chr3L_15295001	RAL-732
1059	chr3L	15899221	15899263	chr3L	15899788	15899828	jockey	6	566	1.0	1.5	1.2	2.7	607	chr3L	15899221	intergenic	pHCl -	chr3L	15899524	intergenic	pHCl -	chr3L	15899828	intergenic	sff -	chr3L_6_15895001	chr3L_15895001	RAL-732
1063	chr3L	16184103	16184141	chr3L	16188922	16188960	X-element	9	4819	1.0	3.0	2.0	3.0	4857	chr3L	16184103	intergenic	not near genes	chr3L	16186532	intergenic	not near genes	chr3L	16188960	intergenic	not near genes	chr3L_9_16185001	chr3L_16185001	RAL-732
1067	chr3L	16443847	16443878	chr3L	16446187	16446218	Doc	8	2340	2.5	2.0	2.2	2.5	2371	chr3L	16443847	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446218	intron,intron	CG33158 +,dsx-c73A -	chr3L_8_16445001	chr3L_16445001	RAL-732
1069	chr3L	16493976	16494010	chr3L	16494493	16494527	jockey	11	517	3.0	2.5	2.8	2.9	551	chr3L	16493976	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494527	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_11_16490001	chr3L_16490001	RAL-732
1072	chr3L	16616521	16616543	chr3L	16621849	16621871	297	4	5328	1.0	3.0	2.0	1.3	5350	chr3L	16616521	3` UTR	Abl -	chr3L	16619196	3` UTR	Abl -	chr3L	16621871	3` UTR	Abl -	chr3L_4_16615001	chr3L_16615001	RAL-732
1078	chr3L	16945728	16945758	chr3L	16954880	16954911	roo	12	9153	4.0	3.5	3.8	2.5	9183	chr3L	16945728	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954911	5` UTR	Nc73EF +	chr3L_12_16950001	chr3L_16950001	RAL-732
1080	chr3L	17034932	17034950	chr3L	17035120	17035138	G2	4	188	1.5	1.0	1.2	1.8	206	chr3L	17034932	intergenic	not near genes	chr3L	17035035	intergenic	not near genes	chr3L	17035138	intergenic	not near genes	chr3L_4_17035001	chr3L_17035001	RAL-732
1081	chr3L	17085005	17085036	chr3L	17094154	17094185	roo	9	9149	3.0	4.0	3.5	2.0	9180	chr3L	17085005	intron	Rbp6 -	chr3L	17089595	intron	Rbp6 -	chr3L	17094185	intron	Rbp6 -	chr3L_9_17085001	chr3L_17085001	RAL-732
1090	chr3L	17516978	17517004	chr3L	17524536	17524562	412	7	7557	1.0	1.5	1.2	3.2	7584	chr3L	17516978	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524562	3` UTR	CG7564 +	chr3L_7_17520001	chr3L_17520001	RAL-732
1091	chr3L	17730858	17730880	chr3L	17738188	17738210	mdg1	6	7330	1.5	2.5	2.0	2.0	7352	chr3L	17730858	intron	Ccn +	chr3L	17734534	intron	Ccn +	chr3L	17738210	intron	Ccn +	chr3L_6_17730001	chr3L_17730001	RAL-732
1095	chr3L	18047714	18047740	chr3L	18056771	18056797	roo	5	9057	2.0	2.0	2.0	1.7	9083	chr3L	18047714	intron	Eip75B -	chr3L	18052256	intron	Eip75B -	chr3L	18056797	intron	Eip75B -	chr3L_5_18050001	chr3L_18050001	RAL-732
1105	chr3L	18506138	18506160	chr3L	18509600	18509623	F-element	7	3463	3.0	2.0	2.5	2.0	3485	chr3L	18506138	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509623	intergenic	not near genes	chr3L_7_18505001	chr3L_18505001	RAL-732
1106	chr3L	18528644	18528657	chr3L	18537805	18537818	roo	8	9161	2.0	2.5	2.2	2.5	9174	chr3L	18528644	intergenic	not near genes	chr3L	18533231	intergenic	not near genes	chr3L	18537818	intergenic	not near genes	chr3L_8_18530001	chr3L_18530001	RAL-732
1109	chr3L	18593946	18593971	chr3L	18595926	18595951	Doc	7	1980	3.5	0.0	1.8	2.5	2005	chr3L	18593946	intergenic	term -	chr3L	18594948	intergenic	not near genes	chr3L	18595951	intergenic	CR45389 +	chr3L_7_18590001	chr3L_18590001	RAL-732
1114	chr3L	18833783	18833814	chr3L	18834947	18834978	1360	5	1164	3.0	3.0	3.0	1.2	1195	chr3L	18833783	intron	Indy -	chr3L	18834380	intron	Indy -	chr3L	18834978	intron	Indy -	chr3L_5_18830001	chr3L_18830001	RAL-732
1119	chr3L	19008840	19008871	chr3L	19009177	19009209	jockey	8	338	1.5	2.0	1.8	2.9	369	chr3L	19008840	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009209	intron	nkd -	chr3L_8_19005001	chr3L_19005001	RAL-732
1124	chr3L	19115640	19115671	chr3L	19115820	19115851	BS	6	180	1.5	2.0	1.8	2.1	211	chr3L	19115640	intron	CG14082 -	chr3L	19115746	intron	CG14082 -	chr3L	19115851	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-732
1125	chr3L	19117044	19117076	chr3L	19124491	19124523	mdg1	7	7447	2.5	1.0	1.8	2.5	7479	chr3L	19117044	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124523	intron	CG14082 -	chr3L_7_19120001	chr3L_19120001	RAL-732
1128	chr3L	19208059	19208083	chr3L	19209433	19209457	Doc	7	1373	3.5	1.5	2.5	2.0	1398	chr3L	19208059	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209457	intron	fz2 -	chr3L_7_19205001	chr3L_19205001	RAL-732
1136	chr3L	19848502	19848533	chr3L	19857692	19857723	roo	6	9190	4.0	1.0	2.5	1.7	9221	chr3L	19848502	intron	Papss +	chr3L	19853112	intron	Papss +	chr3L	19857723	intron	Papss +	chr3L_6_19850001	chr3L_19850001	RAL-732
1138	chr3L	20113665	20113691	chr3L	20122922	20122948	roo	8	9257	1.5	2.5	2.0	2.7	9283	chr3L	20113665	intergenic	not near genes	chr3L	20118306	intergenic	not near genes	chr3L	20122948	intergenic	not near genes	chr3L_8_20115001	chr3L_20115001	RAL-732
1141	chr3L	20257347	20257358	chr3L	20258467	20258478	pogo	6	1120	0.5	6.5	3.5	1.3	1131	chr3L	20257347	intron	rdgC +	chr3L	20257912	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-732
1145	chr3L	20476753	20476779	chr3L	20484351	20484378	springer	8	7599	1.5	0.0	0.8	4.4	7625	chr3L	20476753	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484378	3` UTR	ZnT77C -	chr3L_8_20480001	chr3L_20480001	RAL-732
1147	chr3L	20590074	20590096	chr3L	20590612	20590634	412	7	538	0.5	2.0	1.2	3.2	560	chr3L	20590074	intergenic	not near genes	chr3L	20590354	intergenic	not near genes	chr3L	20590634	intergenic	not near genes	chr3L_7_20590001	chr3L_20590001	RAL-732
1154	chr3L	20821290	20821308	chr3L	20824901	20824916	NOF	5	3610	3.0	6.0	4.5	0.9	3626	chr3L	20821290	intron	Pka-R1 +	chr3L	20823103	intron	Pka-R1 +	chr3L	20824916	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	RAL-732
1161	chr3L	21014913	21014944	chr3L	21023394	21023423	Tirant	10	8480	3.5	3.0	3.2	2.4	8510	chr3L	21014913	intron	skd -	chr3L	21019168	intron	skd -	chr3L	21023423	intron	skd -	chr3L_10_21015001	chr3L_21015001	RAL-732
1166	chr3L	21151867	21151889	chr3L	21156951	21156973	flea	7	5084	2.0	2.5	2.2	2.2	5106	chr3L	21151867	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156973	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-732
1170	chr3L	21498839	21498869	chr3L	21500477	21500507	1360	9	1638	2.0	3.0	2.5	2.6	1668	chr3L	21498839	intron	Glg1 -	chr3L	21499673	intron	Glg1 -	chr3L	21500507	intron	Glg1 -	chr3L_9_21495001	chr3L_21495001	RAL-732
1176	chr3L	21749324	21749339	chr3L	21754484	21754498	Doc	6	5159	2.5	4.0	3.2	1.4	5174	chr3L	21749324	intron	Syn1 -	chr3L	21751911	intron	Syn1 -	chr3L	21754498	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-732
1195	chr3L	22555769	22555803	chr3L	22563239	22563273	blood	7	7470	1.5	0.0	0.8	3.9	7504	chr3L	22555769	intergenic	not near genes	chr3L	22559521	intergenic	not near genes	chr3L	22563273	intergenic	not near genes	chr3L_7_22555001	chr3L_22555001	RAL-732
1196	chr3L	22577628	22577649	chr3L	22582416	22582437	Doc	5	4788	3.5	5.0	4.2	1.0	4809	chr3L	22577628	intergenic	not near genes	chr3L	22580032	intergenic	not near genes	chr3L	22582437	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-732
1197	chr3L	22617188	22617222	chr3L	22624640	22624674	blood	11	7452	2.5	2.0	2.2	3.4	7486	chr3L	22617188	intron	CG14459 -	chr3L	22620931	intron	CG14459 -	chr3L	22624674	intron	CG14459 -	chr3L_11_22620001	chr3L_22620001	RAL-732
1201	chr3L	22761386	22761414	chr3L	22766820	22766848	Ivk	8	5433	4.0	3.0	3.5	1.8	5462	chr3L	22761386	intron	SPoCk +	chr3L	22764117	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_8_22760001	chr3L_22760001	RAL-732
1206	chr3L	22989871	22989886	chr3L	22996845	22996859	297	5	6974	0.5	2.5	1.5	2.0	6988	chr3L	22989871	intergenic	not near genes	chr3L	22993365	intergenic	not near genes	chr3L	22996859	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	RAL-732
1207	chr3L	23042227	23042253	chr3L	23048980	23049006	gypsy6	5	6753	4.5	2.5	3.5	1.1	6779	chr3L	23042227	intergenic	not near genes	chr3L	23045616	intergenic	not near genes	chr3L	23049006	intergenic	not near genes	chr3L_5_23045001	chr3L_23045001	RAL-732
1213	chr3L	24168786	24168822	chr3L	24176114	24176146	ZAM	10	7327	4.0	3.0	3.5	2.2	7360	chr3L	24168786	intron	Snap25 +	chr3L	24172466	intron	Snap25 +	chr3L	24176146	intron	Snap25 +	chr3L_10_24170001	chr3L_24170001	RAL-732
1215	chr3L	24791896	24791922	chr3L	24796675	24796701	Doc	5	4779	0.5	1.5	1.0	2.5	4805	chr3L	24791896	intergenic	not near genes	chr3L	24794298	intergenic	not near genes	chr3L	24796701	intergenic	not near genes	chr3L_5_24790001	chr3L_24790001	RAL-732
1222	chr3L	22908066	22908067	chr3L	27698695	27698695	micropia	7	4790628	18.0	2.5	10.2	0.6	4790629	chr3L	22908066	intergenic	not near genes	chr3L	25303380	intron	CG40467 -	chr3L	27698695	intergenic	not near genes	chr3L_7_25300001	chr3L_25300001	RAL-732
1228	chr3R	4366756	4366770	chr3R	4375139	4375153	roo	4	8383	6.5	0.5	3.5	0.9	8397	chr3R	4366756	3` UTR	CG1090 +	chr3R	4370954	intergenic	not near genes	chr3R	4375153	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	RAL-732
1229	chr3R	4408419	4408430	chr3R	4412722	4412734	Juan	4	4304	3.0	1.5	2.2	1.2	4315	chr3R	4408419	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412734	intron	CG32944 -	chr3R_4_4410001	chr3R_4410001	RAL-732
1232	chr3R	4759723	4759745	chr3R	4761220	4761242	hopper2	6	1497	10.5	10.5	10.5	0.5	1519	chr3R	4759723	intron,intron	atms +,CG44098 -	chr3R	4760482	intron,intron	atms +,CG44098 -	chr3R	4761242	intron,intron	atms +,CG44098 -	chr3R_6_4760001	chr3R_4760001	RAL-732
1237	chr3R	4887489	4887509	chr3R	4894866	4894883	rover	6	7376	2.0	5.0	3.5	1.3	7394	chr3R	4887489	intergenic	not near genes	chr3R	4891186	intergenic	not near genes	chr3R	4894883	intergenic	not near genes	chr3R_6_4890001	chr3R_4890001	RAL-732
1239	chr3R	5045845	5045873	chr3R	5052947	5052975	HMS-Beagle	6	7102	3.5	1.0	2.2	1.9	7130	chr3R	5045845	intron	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5052975	intergenic	CR45588 -	chr3R_6_5045001	chr3R_5045001	RAL-732
1240	chr3R	5067984	5067998	chr3R	5073501	5073515	mdg3	4	5517	2.0	3.5	2.8	1.1	5531	chr3R	5067984	intergenic	not near genes	chr3R	5070750	intergenic	not near genes	chr3R	5073515	intergenic	not near genes	chr3R_4_5070001	chr3R_5070001	RAL-732
1246	chr3R	5445973	5445991	chr3R	5452433	5452451	Burdock	7	6460	1.5	6.5	4.0	1.4	6478	chr3R	5445973	intron	CG14669 +	chr3R	5449212	intron	CG14669 +	chr3R	5452451	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-732
1252	chr3R	5746021	5746039	chr3R	5746262	5746278	pogo	6	240	3.5	3.0	3.2	1.4	257	chr3R	5746021	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746278	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-732
1253	chr3R	5747024	5747045	chr3R	5753215	5753236	diver	4	6191	0.5	2.5	1.5	1.6	6212	chr3R	5747024	intergenic	Madm +	chr3R	5750130	intergenic	not near genes	chr3R	5753236	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-732
1256	chr3R	5822384	5822409	chr3R	5823551	5823575	1360	9	1167	3.5	7.5	5.5	1.4	1191	chr3R	5822384	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823575	3` UTR	CG2023 -	chr3R_9_5820001	chr3R_5820001	RAL-732
1257	chr3R	5927559	5927588	chr3R	5927799	5927826	pogo	13	240	2.5	3.0	2.8	3.4	267	chr3R	5927559	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927826	intron	CG34113 -	chr3R_13_5925001	chr3R_5925001	RAL-732
1261	chr3R	6015961	6015995	chr3R	6024442	6024473	Tirant	6	8480	0.0	2.0	1.0	3.0	8512	chr3R	6015961	intergenic	not near genes	chr3R	6020217	intergenic	not near genes	chr3R	6024473	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	RAL-732
1264	chr3R	6158510	6158535	chr3R	6167093	6167117	Tirant	8	8582	3.5	4.5	4.0	1.6	8607	chr3R	6158510	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	RAL-732
1265	chr3R	6175172	6175199	chr3R	6182444	6182470	HMS-Beagle2	10	7272	2.0	0.0	1.0	5.0	7298	chr3R	6175172	intergenic	Osi1 +	chr3R	6178821	intron	CR45194 +	chr3R	6182470	intergenic	CR45194 +	chr3R_10_6175001	chr3R_6175001	RAL-732
1267	chr3R	6206287	6206320	chr3R	6206504	6206537	BS	13	217	5.0	5.0	5.0	2.2	250	chr3R	6206287	exon	Osi24 +	chr3R	6206412	intron	Osi24 +	chr3R	6206537	intron	Osi24 +	chr3R_13_6205001	chr3R_6205001	RAL-732
1271	chr3R	6510027	6510055	chr3R	6515108	6515136	jockey	8	5081	1.0	1.0	1.0	4.0	5109	chr3R	6510027	intergenic	not near genes	chr3R	6512582	intergenic	not near genes	chr3R	6515136	intergenic	not near genes	chr3R_8_6510001	chr3R_6510001	RAL-732
1277	chr3R	6737501	6737524	chr3R	6739288	6739311	Doc	11	1787	4.0	1.5	2.8	2.9	1810	chr3R	6737501	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739311	intron	pb -	chr3R_11_6735001	chr3R_6735001	RAL-732
1287	chr3R	7694591	7694606	chr3R	7713652	7713667	invader3	4	19061	0.5	3.0	1.8	1.4	19076	chr3R	7694591	3` UTR	Nlg1 +	chr3R	7704129	intergenic	not near genes	chr3R	7713667	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-732
1288	chr3R	7729469	7729497	chr3R	7737406	7737434	Stalker2	4	7938	2.5	2.5	2.5	1.1	7965	chr3R	7729469	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737434	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-732
1292	chr3R	7973314	7973348	chr3R	7974376	7974412	1360	4	1063	1.0	1.5	1.2	1.8	1098	chr3R	7973314	intergenic	not near genes	chr3R	7973863	intergenic	not near genes	chr3R	7974412	3` UTR	CD98hc -	chr3R_4_7970001	chr3R_7970001	RAL-732
1294	chr3R	8094428	8094440	chr3R	8099733	8099745	Transpac	5	5305	1.5	3.5	2.5	1.4	5317	chr3R	8094428	intron	CG7900 +	chr3R	8097086	intron	CG7900 +	chr3R	8099745	intron	CG7900 +	chr3R_5_8095001	chr3R_8095001	RAL-732
1296	chr3R	8207556	8207587	chr3R	8208401	8208432	F-element	7	845	0.5	1.5	1.0	3.5	876	chr3R	8207556	intergenic	not near genes	chr3R	8207994	intergenic	not near genes	chr3R	8208432	intergenic	not near genes	chr3R_7_8205001	chr3R_8205001	RAL-732
1298	chr3R	8403021	8403038	chr3R	8412187	8412203	roo	6	9166	5.0	8.0	6.5	0.8	9182	chr3R	8403021	intron	CG45263 -	chr3R	8407612	intron	CG45263 -	chr3R	8412203	intron	CG45263 -	chr3R_6_8405001	chr3R_8405001	RAL-732
1300	chr3R	8570479	8570504	chr3R	8575115	8575140	HMS-Beagle	9	4636	1.0	2.0	1.5	3.6	4661	chr3R	8570479	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575140	intergenic	not near genes	chr3R_9_8570001	chr3R_8570001	RAL-732
1303	chr3R	8601772	8601800	chr3R	8610925	8610953	roo	5	9152	2.0	1.0	1.5	2.0	9181	chr3R	8601772	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610953	intron	5-HT2B +	chr3R_5_8605001	chr3R_8605001	RAL-732
1305	chr3R	8707354	8707380	chr3R	8709795	8709820	jockey	5	2441	2.0	1.0	1.5	2.0	2466	chr3R	8707354	intergenic	not near genes	chr3R	8708587	intergenic	not near genes	chr3R	8709820	intergenic	not near genes	chr3R_5_8705001	chr3R_8705001	RAL-732
1310	chr3R	8894871	8894895	chr3R	8896027	8896051	1360	4	1156	6.0	9.0	7.5	0.5	1180	chr3R	8894871	intron	pyd -	chr3R	8895461	intron	pyd -	chr3R	8896051	intron	pyd -	chr3R_4_8895001	chr3R_8895001	RAL-732
1314	chr3R	9278780	9278808	chr3R	9284040	9284068	Rt1a	8	5260	1.5	2.5	2.0	2.7	5288	chr3R	9278780	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284068	intergenic	not near genes	chr3R_8_9280001	chr3R_9280001	RAL-732
1334	chr3R	10957864	10957884	chr3R	10963253	10963269	Rt1c	9	5387	6.5	5.5	6.0	1.3	5405	chr3R	10957864	intergenic	not near genes	chr3R	10960566	intergenic	not near genes	chr3R	10963269	intergenic	not near genes	chr3R_9_10960001	chr3R_10960001	RAL-732
1345	chr3R	11379238	11379262	chr3R	11388393	11388417	roo	5	9155	1.5	3.5	2.5	1.4	9179	chr3R	11379238	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388417	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-732
1351	chr3R	11841073	11841080	chr3R	11846264	11846271	BS	7	5190	4.5	4.0	4.2	1.3	5198	chr3R	11841073	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846271	intron	CG6959 -	chr3R_7_11840001	chr3R_11840001	RAL-732
1357	chr3R	12022883	12022908	chr3R	12025060	12025085	pogo	9	2177	1.5	2.0	1.8	3.2	2202	chr3R	12022883	intergenic	not near genes	chr3R	12023984	intergenic	not near genes	chr3R	12025085	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	RAL-732
1372	chr3R	12920158	12920183	chr3R	12925361	12925382	copia	5	5202	4.0	3.0	3.5	1.1	5224	chr3R	12920158	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925382	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-732
1382	chr3R	13143040	13143065	chr3R	13148615	13148641	mdg3	12	5575	2.0	3.0	2.5	3.4	5601	chr3R	13143040	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145840	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_12_13145001	chr3R_13145001	RAL-732
1395	chr3R	14246405	14246413	chr3R	14247901	14247908	jockey	4	1495	5.0	2.5	3.8	0.8	1503	chr3R	14246405	intergenic	not near genes	chr3R	14247156	intergenic	not near genes	chr3R	14247908	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-732
1407	chr3R	15132056	15132085	chr3R	15135116	15135145	Juan	4	3060	5.0	3.5	4.2	0.8	3089	chr3R	15132056	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135145	3` UTR	CG6912 -	chr3R_4_15130001	chr3R_15130001	RAL-732
1408	chr3R	15162540	15162576	chr3R	15167308	15167343	F-element	11	4767	3.5	1.0	2.2	3.4	4803	chr3R	15162540	intron	Gyc88E +	chr3R	15164942	intron	Gyc88E +	chr3R	15167343	intron	Gyc88E +	chr3R_11_15160001	chr3R_15160001	RAL-732
1413	chr3R	15601163	15601196	chr3R	15608685	15608718	412	12	7522	3.5	2.5	3.0	3.0	7555	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_12_15600001	chr3R_15600001	RAL-732
1415	chr3R	15618750	15618764	chr3R	15626224	15626238	blood	4	7474	0.0	2.5	1.2	1.8	7488	chr3R	15618750	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-732
1420	chr3R	16189411	16189437	chr3R	16189812	16189840	invader4	6	403	1.5	0.0	0.8	3.3	429	chr3R	16189411	intron	sra +	chr3R	16189626	intron	sra +	chr3R	16189840	intron	sra +	chr3R_6_16185001	chr3R_16185001	RAL-732
1427	chr3R	16756328	16756345	chr3R	16762519	16762536	diver	9	6190	1.5	2.5	2.0	3.0	6208	chr3R	16756328	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762536	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-732
1436	chr3R	17638316	17638344	chr3R	17638802	17638830	roo	5	486	0.5	1.0	0.8	2.8	514	chr3R	17638316	intron	CG43175 +	chr3R	17638573	intron	CG43175 +	chr3R	17638830	intron,intron	CG43175 +,CR45222 +	chr3R_5_17635001	chr3R_17635001	RAL-732
1442	chr3R	17925850	17925889	chr3R	17927317	17927356	hobo	10	1467	2.0	5.5	3.8	2.1	1506	chr3R	17925850	intron	cpo +	chr3R	17926603	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_10_17925001	chr3R_17925001	RAL-732
1444	chr3R	18061588	18061613	chr3R	18063156	18063181	F-element	4	1568	1.5	3.0	2.2	1.2	1593	chr3R	18061588	intergenic	not near genes	chr3R	18062384	intergenic	not near genes	chr3R	18063181	intergenic	not near genes	chr3R_4_18060001	chr3R_18060001	RAL-732
1448	chr3R	18606502	18606527	chr3R	18610733	18610749	F-element	5	4230	3.5	1.5	2.5	1.4	4247	chr3R	18606502	intron,intron	qin +,CG14304 -	chr3R	18608626	intron,intron	qin +,CG14304 -	chr3R	18610749	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-732
1469	chr3R	20109560	20109570	chr3R	20114766	20114776	copia	4	5206	1.0	3.5	2.2	1.2	5216	chr3R	20109560	intergenic	not near genes	chr3R	20112168	intergenic	not near genes	chr3R	20114776	intergenic	CG10887 +	chr3R_4_20110001	chr3R_20110001	RAL-732
1474	chr3R	20331004	20331027	chr3R	20331490	20331513	roo	4	486	3.0	1.5	2.2	1.2	509	chr3R	20331004	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331513	intergenic	not near genes	chr3R_4_20330001	chr3R_20330001	RAL-732
1483	chr3R	21141675	21141701	chr3R	21150154	21150182	Tirant	6	8480	1.5	4.5	3.0	1.5	8507	chr3R	21141675	intron	SNF4Agamma +	chr3R	21145928	intron	SNF4Agamma +	chr3R	21150182	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-732
1496	chr3R	21609007	21609040	chr3R	21611640	21611674	NOF	6	2634	1.5	6.0	3.8	1.2	2667	chr3R	21609007	intron	InR -	chr3R	21610340	intron	InR -	chr3R	21611674	intron	InR -	chr3R_6_21610001	chr3R_21610001	RAL-732
1498	chr3R	21761125	21761154	chr3R	21768513	21768546	mdg1	6	7391	4.5	3.5	4.0	1.2	7421	chr3R	21761125	exon	CG42335 +	chr3R	21764836	intron	CG42335 +	chr3R	21768546	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-732
1523	chr3R	22234682	22234714	chr3R	22236001	22236033	pogo	5	1319	4.5	4.0	4.2	1.0	1351	chr3R	22234682	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236033	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-732
1524	chr3R	22239491	22239523	chr3R	22248551	22248583	roo	4	9060	2.5	2.0	2.2	1.2	9092	chr3R	22239491	intron	SKIP +	chr3R	22244037	intron	SKIP +	chr3R	22248583	intron	SKIP +	chr3R_4_22240001	chr3R_22240001	RAL-732
1528	chr3R	22450541	22450576	chr3R	22453181	22453216	NOF	11	2640	2.0	2.5	2.2	3.4	2675	chr3R	22450541	intron	CG34376 +	chr3R	22451878	intron	CG34376 +	chr3R	22453216	intron	CG34376 +	chr3R_11_22450001	chr3R_22450001	RAL-732
1543	chr3R	23684695	23684722	chr3R	23685181	23685207	roo	8	486	4.0	4.5	4.2	1.5	512	chr3R	23684695	exon	CG18754 +	chr3R	23684951	intron	CG18754 +	chr3R	23685207	exon	CG18754 +	chr3R_8_23680001	chr3R_23680001	RAL-732
1546	chr3R	23835406	23835435	chr3R	23844556	23844584	roo	6	9150	1.5	1.5	1.5	2.4	9178	chr3R	23835406	intron	CG34355 +	chr3R	23839995	intron	CG34355 +	chr3R	23844584	intron	CG34355 +	chr3R_6_23835001	chr3R_23835001	RAL-732
1550	chr3R	24072083	24072117	chr3R	24072521	24072555	jockey	11	437	5.5	3.5	4.5	2.0	472	chr3R	24072083	intron	4EHP -	chr3R	24072319	intron	4EHP -	chr3R	24072555	intron	4EHP -	chr3R_11_24070001	chr3R_24070001	RAL-732
1551	chr3R	24076913	24076949	chr3R	24078380	24078416	hobo	5	1467	2.5	1.5	2.0	1.7	1503	chr3R	24076913	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078416	intron	4EHP -	chr3R_5_24075001	chr3R_24075001	RAL-732
1561	chr3R	24730090	24730111	chr3R	24732468	24732489	Doc	4	2378	4.5	1.0	2.8	1.1	2399	chr3R	24730090	intron	tok +	chr3R	24731290	intron	tok +	chr3R	24732489	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-732
1564	chr3R	24927126	24927148	chr3R	24931916	24931937	Doc	5	4790	7.5	3.5	5.5	0.8	4811	chr3R	24927126	intergenic	Trf4-2 +	chr3R	24929532	intergenic	not near genes	chr3R	24931937	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	RAL-732
1582	chr3R	25832688	25832718	chr3R	25841870	25841900	roo	9	9182	4.5	3.5	4.0	1.8	9212	chr3R	25832688	exon	alpha4GT2 +	chr3R	25837294	intron	alpha4GT2 +	chr3R	25841900	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-732
1588	chr3R	26108829	26108843	chr3R	26117412	26117426	Tirant	4	8583	1.0	0.0	0.5	2.7	8597	chr3R	26108829	5` UTR	CG31324 +	chr3R	26113128	intron	CG31324 +	chr3R	26117426	intron	CG31324 +	chr3R_4_26110001	chr3R_26110001	RAL-732
1592	chr3R	26376322	26376358	chr3R	26385482	26385518	roo	12	9160	1.5	0.5	1.0	6.0	9196	chr3R	26376322	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385518	intergenic	not near genes	chr3R_12_26380001	chr3R_26380001	RAL-732
1594	chr3R	26558348	26558358	chr3R	26565660	26565670	Stalker4	6	7312	3.0	6.5	4.8	1.0	7322	chr3R	26558348	intron	scrib +	chr3R	26562009	intron	scrib +	chr3R	26565670	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-732
1597	chr3R	26642748	26642759	chr3R	26643142	26643153	jockey	6	394	2.0	6.0	4.0	1.2	405	chr3R	26642748	intergenic	not near genes	chr3R	26642950	intergenic	not near genes	chr3R	26643153	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RAL-732
1601	chr3R	26810555	26810586	chr3R	26811040	26811071	roo	5	485	2.5	3.0	2.8	1.3	516	chr3R	26810555	intron	Tl +	chr3R	26810813	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_5_26810001	chr3R_26810001	RAL-732
1604	chr3R	27140514	27140543	chr3R	27148124	27148152	412	10	7610	5.5	3.0	4.2	1.9	7638	chr3R	27140514	intron	CG6051 -	chr3R	27144333	intron	CG6051 -	chr3R	27148152	intron	CG6051 -	chr3R_10_27140001	chr3R_27140001	RAL-732
1610	chr3R	27521172	27521187	chr3R	27530381	27530396	roo	6	9209	1.0	0.5	0.8	3.3	9224	chr3R	27521172	intron	CG12885 +	chr3R	27525784	intron	CG12885 +	chr3R	27530396	intron	CG12885 +	chr3R_6_27525001	chr3R_27525001	RAL-732
1618	chr3R	27862963	27862984	chr3R	27868265	27868288	Transpac	6	5304	0.0	1.5	0.8	3.3	5325	chr3R	27862963	intron	CG34353 -	chr3R	27865626	intron	CG34353 -	chr3R	27868288	intron	CG34353 -	chr3R_6_27865001	chr3R_27865001	RAL-732
1619	chr3R	27875699	27875728	chr3R	27882754	27882782	297	14	7055	2.5	4.5	3.5	3.1	7083	chr3R	27875699	intron	CG34353 -	chr3R	27879240	intron	CG34353 -	chr3R	27882782	intron	CG34353 -	chr3R_14_27875001	chr3R_27875001	RAL-732
1621	chr3R	28068494	28068525	chr3R	28073936	28073967	I-element	6	5442	1.0	2.0	1.5	2.4	5473	chr3R	28068494	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-732
1623	chr3R	28173672	28173702	chr3R	28181102	28181132	mdg1	5	7430	3.5	2.0	2.8	1.3	7460	chr3R	28173672	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181132	intron	CG34354 +	chr3R_5_28175001	chr3R_28175001	RAL-732
1625	chr3R	28253338	28253370	chr3R	28255848	28255880	jockey	9	2510	2.5	3.0	2.8	2.4	2542	chr3R	28253338	intergenic	not near genes	chr3R	28254609	intergenic	not near genes	chr3R	28255880	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	RAL-732
1627	chr3R	28302103	28302132	chr3R	28302542	28302571	jockey	5	439	2.0	2.5	2.2	1.6	468	chr3R	28302103	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302571	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-732
1650	chr3R	29406610	29406646	chr3R	29407896	29407932	jockey	8	1286	4.0	3.0	3.5	1.8	1322	chr3R	29406610	intron	Ptp99A +	chr3R	29407271	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-732
1659	chr3R	29738267	29738297	chr3R	29739733	29739763	hobo	12	1467	1.5	0.0	0.8	6.7	1496	chr3R	29738267	intergenic	CG1969 +,CG7598 +	chr3R	29739015	intron	CG1969 +	chr3R	29739763	5` UTR	CG1969 +	chr3R_12_29735001	chr3R_29735001	RAL-732
1660	chr3R	29882018	29882044	chr3R	29891175	29891201	roo	8	9157	2.5	3.5	3.0	2.0	9183	chr3R	29882018	intron	CG31038 +	chr3R	29886610	intron	CG31038 +	chr3R	29891201	intron	CG31038 +	chr3R_8_29885001	chr3R_29885001	RAL-732
1664	chr3R	30238771	30238791	chr3R	30239927	30239955	1360	6	1162	0.5	4.0	2.2	1.9	1184	chr3R	30238771	intergenic	not near genes	chr3R	30239363	intergenic	not near genes	chr3R	30239955	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-732
1666	chr3R	30396215	30396246	chr3R	30404481	30404512	roo	5	8266	1.0	2.5	1.8	1.8	8297	chr3R	30396215	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_5_30400001	chr3R_30400001	RAL-732
1669	chr3R	30480472	30480510	chr3R	30482940	30482978	jockey	14	2468	1.5	2.5	2.0	4.7	2506	chr3R	30480472	intron	PH4alphaEFB +	chr3R	30481725	intron	PH4alphaEFB +	chr3R	30482978	intron	PH4alphaEFB +	chr3R_14_30480001	chr3R_30480001	RAL-732
1674	chr3R	30679518	30679552	chr3R	30686987	30687020	blood	6	7469	3.0	5.0	4.0	1.2	7502	chr3R	30679518	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687020	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	RAL-732
1676	chr3R	30818821	30818846	chr3R	30820386	30820411	1360	6	1565	2.0	1.0	1.5	2.4	1590	chr3R	30818821	intron	cindr +	chr3R	30819616	intron	cindr +	chr3R	30820411	intron	cindr +	chr3R_6_30815001	chr3R_30815001	RAL-732
1682	chr3R	31074234	31074258	chr3R	31081832	31081856	springer	7	7598	2.0	0.5	1.2	3.2	7622	chr3R	31074234	intron	Sox100B +	chr3R	31078045	intron	Sox100B +	chr3R	31081856	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	RAL-732
1685	chr3R	31279373	31279403	chr3R	31285564	31285594	diver	5	6191	1.5	4.5	3.0	1.2	6221	chr3R	31279373	intergenic	not near genes	chr3R	31282484	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-732
1686	chr3R	31413088	31413122	chr3R	31418288	31418322	copia	12	5200	2.5	1.5	2.0	4.0	5234	chr3R	31413088	intron	Gprk2 +	chr3R	31415705	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_12_31415001	chr3R_31415001	RAL-732
1694	chr3R	31691533	31691555	chr3R	31696299	31696319	Doc	8	4765	3.5	6.5	5.0	1.3	4786	chr3R	31691533	intergenic	not near genes	chr3R	31693926	intergenic	not near genes	chr3R	31696319	intergenic	not near genes	chr3R_8_31690001	chr3R_31690001	RAL-732
1708	chr4	671608	671636	chr4	680191	680219	Tirant	6	8583	3.0	2.5	2.8	1.6	8611	chr4	671608	intron	CG11360 +	chr4	675914	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_6_675001	chr4_675001	RAL-732
1711	chrX	318470	318499	chrX	323556	323585	flea	7	5086	1.5	4.0	2.8	1.8	5115	chrX	318470	intron,intron	CG3777 +,CG32816 -	chrX	321028	intron,intron	CG3777 +,CG32816 -	chrX	323585	intron,intron	CG3777 +,CG32816 -	chrX_7_320001	chrX_320001	RAL-732
1712	chrX	428418	428452	chrX	434602	434637	3S18	10	6185	3.0	0.5	1.8	3.6	6219	chrX	428418	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434637	intron	CG32816 -	chrX_10_430001	chrX_430001	RAL-732
1716	chrX	551428	551449	chrX	558990	559011	412	5	7562	3.5	3.0	3.2	1.2	7583	chrX	551428	intron	Appl +	chrX	555220	intron	Appl +	chrX	559011	intron	Appl +	chrX_5_555001	chrX_555001	RAL-732
1724	chrX	827599	827634	chrX	835391	835420	roo	6	7791	2.5	0.0	1.2	2.7	7821	chrX	827599	intron	CG43867 -	chrX	831510	intron	CG43867 -	chrX	835420	intron	CG43867 -	chrX_6_830001	chrX_830001	RAL-732
1727	chrX	906703	906733	chrX	908492	908522	S-element	8	1788	5.0	3.0	4.0	1.6	1819	chrX	906703	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-732
1731	chrX	1357779	1357804	chrX	1367949	1367974	Doc	8	10170	3.0	3.0	3.0	2.0	10195	chrX	1357779	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367974	intergenic	not near genes	chrX_8_1360001	chrX_1360001	RAL-732
1732	chrX	1518037	1518073	chrX	1523439	1523475	jockey	10	5402	0.5	3.0	1.8	3.6	5438	chrX	1518037	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523475	intergenic	not near genes	chrX_10_1520001	chrX_1520001	RAL-732
1733	chrX	1627973	1628000	chrX	1635441	1635468	gtwin	10	7468	2.0	1.5	1.8	3.6	7495	chrX	1627973	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635468	intron,intron	Mur2B -,br +	chrX_10_1630001	chrX_1630001	RAL-732
1734	chrX	1930547	1930570	chrX	1938117	1938141	opus	4	7571	0.0	1.5	0.8	2.2	7594	chrX	1930547	intergenic	CG11596 +	chrX	1934344	intergenic	not near genes	chrX	1938141	3` UTR	CG3857 -	chrX_4_1930001	chrX_1930001	RAL-732
1735	chrX	1954892	1954917	chrX	1962832	1962857	Stalker2	4	7940	1.5	2.5	2.0	1.3	7965	chrX	1954892	intron	Hr4 +	chrX	1958874	intron	Hr4 +	chrX	1962857	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-732
1740	chrX	2399835	2399863	chrX	2408188	2408214	roo	12	8352	6.5	0.5	3.5	2.7	8379	chrX	2399835	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408214	intergenic	not near genes	chrX_12_2400001	chrX_2400001	RAL-732
1745	chrX	2664382	2664418	chrX	2665528	2665564	1360	7	1145	0.0	3.5	1.8	2.5	1182	chrX	2664382	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665564	intron	sgg +	chrX_7_2660001	chrX_2660001	RAL-732
1749	chrX	3058025	3058038	chrX	3058266	3058279	pogo	4	241	0.0	0.0	0.0	4.0	254	chrX	3058025	intron	kirre +	chrX	3058152	intron	kirre +	chrX	3058279	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-732
1750	chrX	3075648	3075664	chrX	3080953	3080970	Transpac	4	5306	1.5	4.0	2.8	1.1	5322	chrX	3075648	intron	kirre +	chrX	3078309	intron	kirre +	chrX	3080970	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-732
1753	chrX	3415025	3415042	chrX	3421210	3421227	3S18	5	6185	2.0	4.5	3.2	1.2	6202	chrX	3415025	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421227	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-732
1756	chrX	3597562	3597580	chrX	3619730	3619748	roo	6	22168	2.0	1.0	1.5	2.4	22186	chrX	3597562	intron	AstA-R1 +	chrX	3608655	intron	AstA-R1 +	chrX	3619748	intron	AstA-R1 +	chrX_6_3605001	chrX_3605001	RAL-732
1758	chrX	3842326	3842352	chrX	3842567	3842593	pogo	5	241	1.5	4.0	2.8	1.3	267	chrX	3842326	intron	ec +	chrX	3842460	intron	ec +	chrX	3842593	intron	ec +	chrX_5_3840001	chrX_3840001	RAL-732
1760	chrX	3986863	3986896	chrX	3994496	3994529	412	4	7633	1.5	1.0	1.2	1.8	7666	chrX	3986863	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994529	intergenic	not near genes	chrX_4_3990001	chrX_3990001	RAL-732
1763	chrX	4157896	4157919	chrX	4164949	4164971	297	8	7053	2.0	0.0	1.0	4.0	7075	chrX	4157896	intron	Fas2 -	chrX	4161434	intron	Fas2 -	chrX	4164971	intron	Fas2 -	chrX_8_4160001	chrX_4160001	RAL-732
1773	chrX	4700391	4700426	chrX	4700734	4700769	jockey	4	343	1.5	2.5	2.0	1.3	378	chrX	4700391	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700769	3` UTR	ctp +	chrX_4_4700001	chrX_4700001	RAL-732
1775	chrX	4731815	4731831	chrX	4736908	4736924	jockey	4	5093	7.0	4.0	5.5	0.6	5109	chrX	4731815	intergenic	not near genes	chrX	4734370	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-732
1776	chrX	4763251	4763285	chrX	4763739	4763773	Stalker4	6	488	3.5	2.0	2.8	1.6	522	chrX	4763251	intergenic	not near genes	chrX	4763512	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_6_4760001	chrX_4760001	RAL-732
1777	chrX	4792382	4792409	chrX	4792815	4792842	jockey	4	433	0.5	3.0	1.8	1.4	460	chrX	4792382	intergenic	not near genes	chrX	4792612	intergenic	not near genes	chrX	4792842	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-732
1778	chrX	4827970	4827999	chrX	4835341	4835370	Stalker4	6	7370	2.0	3.0	2.5	1.7	7400	chrX	4827970	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835370	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-732
1780	chrX	4990045	4990076	chrX	4997259	4997290	roo	7	7214	2.0	1.5	1.8	2.5	7245	chrX	4990045	intron	CR44833 -	chrX	4993668	intron	CR44833 -	chrX	4997290	intron	CR44833 -	chrX_7_4990001	chrX_4990001	RAL-732
1781	chrX	5096275	5096303	chrX	5103838	5103868	springer	9	7565	1.5	1.0	1.2	4.1	7593	chrX	5096275	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103868	intron,intron	CG15465 +,rg +	chrX_9_5100001	chrX_5100001	RAL-732
1782	chrX	5338727	5338736	chrX	5339980	5339988	jockey	4	1252	2.0	1.5	1.8	1.4	1261	chrX	5338727	intergenic	not near genes	chrX	5339358	intergenic	not near genes	chrX	5339988	intergenic	SK +	chrX_4_5335001	chrX_5335001	RAL-732
1785	chrX	5524843	5524871	chrX	5528705	5528734	412	7	3862	2.0	0.5	1.2	3.2	3891	chrX	5524843	intergenic	snoRNA:Psi28S-3342 -	chrX	5526788	intergenic	not near genes	chrX	5528734	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	RAL-732
1788	chrX	5883825	5883828	chrX	5884066	5884069	pogo	4	241	3.0	2.0	2.5	1.1	244	chrX	5883825	intron	CR45668 -	chrX	5883947	intron	CR45668 -	chrX	5884069	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-732
1789	chrX	5884160	5884192	chrX	5884401	5884433	pogo	7	241	1.5	1.5	1.5	2.8	273	chrX	5884160	intron	CR45668 -	chrX	5884296	intron	CR45668 -	chrX	5884433	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-732
1792	chrX	6171587	6171608	chrX	6179019	6179041	Quasimodo	6	7433	2.0	1.5	1.8	2.1	7454	chrX	6171587	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179041	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-732
1793	chrX	6335230	6335240	chrX	6337737	6337750	Tirant	4	2508	0.0	4.5	2.2	1.2	2520	chrX	6335230	intergenic	not near genes	chrX	6336490	intergenic	not near genes	chrX	6337750	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-732
1794	chrX	6392868	6392904	chrX	6397633	6397668	Doc	9	4765	2.5	0.5	1.5	3.6	4800	chrX	6392868	intergenic	not near genes	chrX	6395268	intergenic	not near genes	chrX	6397668	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-732
1795	chrX	6562817	6562850	chrX	6571299	6571332	Tirant	20	8482	6.0	7.5	6.8	2.6	8515	chrX	6562817	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571332	intron	CG34417 +	chrX_20_6565001	chrX_6565001	RAL-732
1799	chrX	7023599	7023633	chrX	7030989	7031023	Tabor	11	7390	3.5	1.5	2.5	3.1	7424	chrX	7023599	intron	CG12541 -	chrX	7027311	intron	CG12541 -	chrX	7031023	intron	CG12541 -	chrX_11_7025001	chrX_7025001	RAL-732
1801	chrX	7125247	7125275	chrX	7134406	7134434	roo	7	9159	1.5	3.5	2.5	2.0	9187	chrX	7125247	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134434	intergenic	not near genes	chrX_7_7125001	chrX_7125001	RAL-732
1804	chrX	7702903	7702931	chrX	7703342	7703370	jockey	9	438	3.0	3.0	3.0	2.2	467	chrX	7702903	intron	CHES-1-like -	chrX	7703136	intron	CHES-1-like -	chrX	7703370	intron	CHES-1-like -	chrX_9_7700001	chrX_7700001	RAL-732
1809	chrX	7845725	7845757	chrX	7847214	7847248	hopper2	7	1491	1.5	0.5	1.0	3.5	1523	chrX	7845725	intergenic	not near genes	chrX	7846486	intergenic	not near genes	chrX	7847248	intergenic	not near genes	chrX_7_7845001	chrX_7845001	RAL-732
1810	chrX	8031429	8031462	chrX	8035738	8035771	Juan	10	4309	2.5	4.0	3.2	2.4	4342	chrX	8031429	intergenic	not near genes	chrX	8033600	intergenic	not near genes	chrX	8035771	3` UTR	CG2233 -	chrX_10_8030001	chrX_8030001	RAL-732
1814	chrX	8922330	8922363	chrX	8922764	8922796	jockey	10	434	0.5	4.0	2.2	3.1	466	chrX	8922330	intron	rdgA +	chrX	8922563	intron	rdgA +	chrX	8922796	intron	rdgA +	chrX_10_8920001	chrX_8920001	RAL-732
1815	chrX	8927589	8927613	chrX	8929858	8929881	NOF	4	2269	2.5	4.0	3.2	1.0	2292	chrX	8927589	intron	rdgA +	chrX	8928735	intron	rdgA +	chrX	8929881	intron	rdgA +	chrX_4_8925001	chrX_8925001	RAL-732
1821	chrX	9508133	9508155	chrX	9509651	9509672	jockey	8	1518	1.5	2.0	1.8	2.9	1539	chrX	9508133	intron	CG32700 -	chrX	9508902	intron	CG32700 -	chrX	9509672	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-732
1822	chrX	9575792	9575823	chrX	9576114	9576147	mdg3	10	323	1.5	2.0	1.8	3.6	355	chrX	9575792	intron,exon	CG32699 -,CG42395 -	chrX	9575970	intron,intron	CG32699 -,CG42395 -	chrX	9576147	intron,5` UTR	CG32699 -,CG42395 -	chrX_10_9575001	chrX_9575001	RAL-732
1829	chrX	10686049	10686077	chrX	10691186	10691214	roo	4	5137	2.5	1.0	1.8	1.4	5165	chrX	10686049	intron	X11Lbeta +	chrX	10688632	intron	X11Lbeta +	chrX	10691214	intron	X11Lbeta +	chrX_4_10685001	chrX_10685001	RAL-732
1832	chrX	11268562	11268594	chrX	11270054	11270087	hopper2	8	1493	1.5	1.5	1.5	3.2	1525	chrX	11268562	intron	CG44422 -	chrX	11269324	intron	CG44422 -	chrX	11270087	intron	CG44422 -	chrX_8_11265001	chrX_11265001	RAL-732
1833	chrX	11312059	11312094	chrX	11319412	11319441	Stalker2	6	7352	0.5	2.0	1.2	2.7	7382	chrX	11312059	intergenic	not near genes	chrX	11315750	intergenic	not near genes	chrX	11319441	intergenic	not near genes	chrX_6_11315001	chrX_11315001	RAL-732
1837	chrX	11633417	11633438	chrX	11640471	11640492	297	4	7054	1.5	2.5	2.0	1.3	7075	chrX	11633417	intron	Ptp10D +	chrX	11636954	intron	Ptp10D +	chrX	11640492	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-732
1852	chrX	13401488	13401517	chrX	13401840	13401869	jockey	5	352	1.0	0.0	0.5	3.3	381	chrX	13401488	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401869	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-732
1856	chrX	13937980	13938007	chrX	13941251	13941278	I-element	5	3271	0.5	2.0	1.2	2.3	3298	chrX	13937980	intron	mamo -	chrX	13939629	intron	mamo -	chrX	13941278	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-732
1858	chrX	14105021	14105045	chrX	14114172	14114196	roo	7	9151	4.5	0.5	2.5	2.0	9175	chrX	14105021	intergenic	not near genes	chrX	14109608	intergenic	not near genes	chrX	14114196	5` UTR	CR44657 +	chrX_7_14105001	chrX_14105001	RAL-732
1863	chrX	14589693	14589706	chrX	14589934	14589947	pogo	4	241	0.5	0.5	0.5	2.7	254	chrX	14589693	intron	CG9413 -	chrX	14589820	intron	CG9413 -	chrX	14589947	intron	CG9413 -	chrX_4_14585001	chrX_14585001	RAL-732
1866	chrX	14818767	14818791	chrX	14823971	14823990	copia	4	5203	3.5	1.0	2.2	1.2	5223	chrX	14818767	intron	rut -	chrX	14821378	intron	rut -	chrX	14823990	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-732
1872	chrX	15413049	15413083	chrX	15417351	15417385	Juan	13	4302	3.0	2.5	2.8	3.4	4336	chrX	15413049	intron	Cngl -	chrX	15415217	intron	Cngl -	chrX	15417385	intron	Cngl -	chrX_13_15415001	chrX_15415001	RAL-732
1873	chrX	15435689	15435704	chrX	15436122	15436137	rover	6	433	1.5	5.5	3.5	1.3	448	chrX	15435689	intron	Cngl -	chrX	15435913	intron	Cngl -	chrX	15436137	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-732
1880	chrX	16492652	16492668	chrX	16498229	16498245	mdg3	6	5577	1.0	3.0	2.0	2.0	5593	chrX	16492652	intron	para -	chrX	16495448	intron	para -	chrX	16498245	intron	para -	chrX_6_16495001	chrX_16495001	RAL-732
1896	chrX	18429497	18429519	chrX	18434808	18434830	Transpac	4	5311	2.5	2.5	2.5	1.1	5333	chrX	18429497	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434830	intergenic	not near genes	chrX_4_18430001	chrX_18430001	RAL-732
1905	chrX	19380163	19380187	chrX	19380404	19380428	pogo	6	241	2.0	1.5	1.8	2.1	265	chrX	19380163	intron	kek5 +	chrX	19380296	intron	kek5 +	chrX	19380428	intron	kek5 +	chrX_6_19380001	chrX_19380001	RAL-732
1907	chrX	19472121	19472150	chrX	19472691	19472719	jockey	4	570	1.5	1.5	1.5	1.6	598	chrX	19472121	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472719	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-732
1908	chrX	19710073	19710101	chrX	19711857	19711887	S-element	11	1785	2.0	2.5	2.2	3.4	1814	chrX	19710073	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711887	intron	meso18E -	chrX_11_19710001	chrX_19710001	RAL-732
1918	chrX	20377326	20377349	chrX	20378793	20378816	hobo	10	1467	0.5	3.0	1.8	3.6	1490	chrX	20377326	intergenic	not near genes	chrX	20378071	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_10_20375001	chrX_20375001	RAL-732
1921	chrX	20504128	20504158	chrX	20505649	20505679	transib2	8	1521	2.5	1.0	1.8	2.9	1551	chrX	20504128	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505679	intron	RhoGAP19D -	chrX_8_20500001	chrX_20500001	RAL-732
1930	chrX	20940718	20940756	chrX	20942187	20942225	hobo	9	1469	1.0	1.0	1.0	4.5	1507	chrX	20940718	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_9_20940001	chrX_20940001	RAL-732
1932	chrX	21061870	21061894	chrX	21062355	21062378	roo	5	485	0.5	1.0	0.8	2.8	508	chrX	21061870	intron	bves +	chrX	21062124	intron	bves +	chrX	21062378	intron,3` UTR	bves +,CG32512 -	chrX_5_21060001	chrX_21060001	RAL-732
1934	chrX	21086132	21086158	chrX	21087161	21087187	jockey	4	1029	1.0	0.5	0.8	2.2	1055	chrX	21086132	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087187	intergenic	not near genes	chrX_4_21085001	chrX_21085001	RAL-732
1938	chrX	21458691	21458707	chrX	21464127	21464143	Ivk	4	5436	3.5	2.0	2.8	1.1	5452	chrX	21458691	intergenic	not near genes	chrX	21461417	intergenic	not near genes	chrX	21464143	intergenic	not near genes	chrX_4_21460001	chrX_21460001	RAL-732
1939	chrX	21474409	21474435	chrX	21474775	21474801	1731	5	366	2.5	1.0	1.8	1.8	392	chrX	21474409	intergenic	not near genes	chrX	21474605	intergenic	not near genes	chrX	21474801	intergenic	not near genes	chrX_5_21470001	chrX_21470001	RAL-732
1944	chrX	22522626	22522647	chrX	22525446	22525467	NOF	5	2820	2.5	2.0	2.2	1.6	2841	chrX	22522626	intron	CG17600 +	chrX	22524046	intron	CG17600 +	chrX	22525467	intron	CG17600 +	chrX_5_22520001	chrX_22520001	RAL-732
1949	chrX	22697495	22697524	chrX	22701792	22701821	Juan	4	4297	3.0	3.0	3.0	1.0	4326	chrX	22697495	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701821	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-732
1951	chrX	22996317	22996338	chrX	23003551	23003572	roo	4	7234	2.0	4.5	3.2	1.0	7255	chrX	22996317	intron,intron	stnA -,stnB -	chrX	22999944	intron,intron	stnA -,stnB -	chrX	23003572	intron,intron	stnA -,stnB -	chrX_4_22995001	chrX_22995001	RAL-732
1954	chrY	1431370	1431373	chrY	1447406	1447409	Doc	4	16036	2.5	6.0	4.2	0.8	16039	chrY	1431370	intergenic	not near genes	chrY	1439390	intergenic	not near genes	chrY	1447409	intergenic	not near genes	chrY_4_1435001	chrY_1435001	RAL-732