SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47485 chr2L 52564 52590 jockey 8 5105 1.5 6.0 3.8 1.7 5131 chr2L 47459 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52590 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-732 2 chr2L 313472 313496 chr2L 313570 313595 11 98 0.0 2.5 1.2 5.0 123 chr2L 313472 intron Plc21C + chr2L 313534 intron Plc21C + chr2L 313595 intron Plc21C + chr2L_11_310001 chr2L_310001 RAL-732 3 chr2L 325126 325155 chr2L 325203 325227 7 76 4.0 3.5 3.8 1.5 101 chr2L 325126 intron Plc21C + chr2L 325176 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-732 4 chr2L 347886 347918 chr2L 355385 355418 blood 4 7500 3.5 1.5 2.5 1.1 7532 chr2L 347886 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355418 3` UTR Plc21C + chr2L_4_350001 chr2L_350001 RAL-732 5 chr2L 407947 407972 chr2L 408028 408053 6 81 1.5 0.5 1.0 3.0 106 chr2L 407947 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408053 3` UTR AP-2alpha - chr2L_6_405001 chr2L_405001 RAL-732 6 chr2L 458889 458909 chr2L 458966 458986 5 77 1.5 1.5 1.5 2.0 97 chr2L 458889 3` UTR CG4297 - chr2L 458938 3` UTR CG4297 - chr2L 458986 3` UTR CG4297 - chr2L_5_455001 chr2L_455001 RAL-732 7 chr2L 533920 533949 chr2L 534009 534038 9 88 4.5 3.0 3.8 1.9 118 chr2L 533920 intron ush + chr2L 533979 intron ush + chr2L 534038 intron ush + chr2L_9_530001 chr2L_530001 RAL-732 8 chr2L 630309 630331 chr2L 630401 630423 7 92 2.0 0.0 1.0 3.5 114 chr2L 630309 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630423 intergenic not near genes chr2L_7_630001 chr2L_630001 RAL-732 9 chr2L 686916 686950 chr2L 695956 695990 roo 12 9039 3.5 1.0 2.2 3.8 9074 chr2L 686916 intron ds - chr2L 691453 intron ds - chr2L 695990 intron ds - chr2L_12_690001 chr2L_690001 RAL-732 10 chr2L 764568 764588 chr2L 764649 764669 6 81 2.0 2.5 2.2 1.9 101 chr2L 764568 intergenic not near genes chr2L 764618 intergenic not near genes chr2L 764669 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-732 11 chr2L 770464 770488 chr2L 772245 772267 Bari1 12 1780 4.0 3.5 3.8 2.5 1803 chr2L 770464 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772267 intergenic CR44614 + chr2L_12_770001 chr2L_770001 RAL-732 12 chr2L 775765 775787 chr2L 775842 775863 8 77 4.5 2.0 3.2 1.9 98 chr2L 775765 intergenic not near genes chr2L 775814 intergenic not near genes chr2L 775863 intergenic not near genes chr2L_8_775001 chr2L_775001 RAL-732 13 chr2L 877840 877862 chr2L 877921 877943 9 81 8.5 1.0 4.8 1.6 103 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-732 14 chr2L 976878 976911 chr2L 984514 984546 roo 8 7636 2.0 1.5 1.8 2.9 7668 chr2L 976878 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-732 15 chr2L 1035559 1035581 chr2L 1035636 1035658 7 77 8.0 1.0 4.5 1.3 99 chr2L 1035559 intron IA-2 - chr2L 1035608 intron IA-2 - chr2L 1035658 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-732 16 chr2L 1083698 1083715 chr2L 1083774 1083791 4 76 2.0 2.0 2.0 1.3 93 chr2L 1083698 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083744 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083791 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_4_1080001 chr2L_1080001 RAL-732 17 chr2L 1126678 1126704 chr2L 1126747 1126779 9 75 2.5 4.0 3.2 2.1 101 chr2L 1126678 intron Pino - chr2L 1126728 intron Pino - chr2L 1126779 intron Pino - chr2L_9_1125001 chr2L_1125001 RAL-732 18 chr2L 1218408 1218427 chr2L 1218498 1218516 4 90 2.0 0.0 1.0 2.0 108 chr2L 1218408 intergenic not near genes chr2L 1218462 intergenic not near genes chr2L 1218516 intergenic not near genes chr2L_4_1215001 chr2L_1215001 RAL-732 19 chr2L 1220133 1220149 chr2L 1227599 1227615 blood 4 7466 7.5 0.5 4.0 0.8 7482 chr2L 1220133 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227615 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-732 20 chr2L 1261134 1261260 chr2L 1261216 1261341 11 81 0.5 0.5 0.5 7.3 207 chr2L 1261134 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261341 intron robo3 + chr2L_11_1260001 chr2L_1260001 RAL-732 21 chr2L 1570702 1570718 chr2L 1573574 1573590 F-element 7 2872 1.5 4.0 2.8 1.8 2888 chr2L 1570702 intron haf + chr2L 1572146 intron haf + chr2L 1573590 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-732 22 chr2L 1590956 1590988 chr2L 1591032 1591064 7 76 5.5 1.5 3.5 1.6 108 chr2L 1590956 intron haf + chr2L 1591010 intron haf + chr2L 1591064 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-732 23 chr2L 1635397 1635429 chr2L 1635533 1635565 11 135 0.0 3.5 1.8 3.9 168 chr2L 1635397 intergenic not near genes chr2L 1635481 intergenic not near genes chr2L 1635565 intergenic not near genes chr2L_11_1635001 chr2L_1635001 RAL-732 24 chr2L 1642825 1642841 chr2L 1642901 1642917 5 76 0.0 3.0 1.5 2.0 92 chr2L 1642825 intergenic not near genes chr2L 1642871 intergenic not near genes chr2L 1642917 intergenic not near genes chr2L_5_1640001 chr2L_1640001 RAL-732 25 chr2L 1643447 1643470 chr2L 1643524 1643547 4 77 0.0 1.0 0.5 2.7 100 chr2L 1643447 intergenic not near genes chr2L 1643497 intergenic not near genes chr2L 1643547 intergenic not near genes chr2L_4_1640001 chr2L_1640001 RAL-732 26 chr2L 1655339 1655367 chr2L 1655429 1655457 8 90 1.5 1.5 1.5 3.2 118 chr2L 1655339 intron chinmo + chr2L 1655398 intron chinmo + chr2L 1655457 intron chinmo + chr2L_8_1655001 chr2L_1655001 RAL-732 27 chr2L 1679003 1679008 chr2L 1686468 1686473 blood 4 7465 0.5 6.0 3.2 1.0 7470 chr2L 1679003 intron chinmo + chr2L 1682738 intron chinmo + chr2L 1686473 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-732 28 chr2L 1711360 1711387 chr2L 1711684 1711710 mdg3 7 323 2.0 5.0 3.5 1.6 350 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711710 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-732 29 chr2L 1721827 1721833 chr2L 1721910 1721916 5 84 0.0 2.5 1.2 2.3 89 chr2L 1721827 intron Rim2 - chr2L 1721872 intron Rim2 - chr2L 1721916 intron Rim2 - chr2L_5_1720001 chr2L_1720001 RAL-732 30 chr2L 1781121 1781134 chr2L 1781273 1781286 5 152 8.5 3.0 5.8 0.7 165 chr2L 1781121 intergenic not near genes chr2L 1781204 intergenic not near genes chr2L 1781286 intergenic not near genes chr2L_5_1780001 chr2L_1780001 RAL-732 31 chr2L 1837817 1837834 chr2L 1838047 1838064 6 230 1.0 4.5 2.8 1.6 247 chr2L 1837817 intron wry + chr2L 1837940 intron wry + chr2L 1838064 intron wry + chr2L_6_1835001 chr2L_1835001 RAL-732 32 chr2L 1914529 1914531 chr2L 16217660 16217660 4 14303130 11.5 12.5 12.0 0.3 14303131 chr2L 1914529 intron CG7337 + chr2L 9066094 exon CG31708 - chr2L 16217660 intergenic not near genes chr2L_4_9065001 chr2L_9065001 RAL-732 33 chr2L 1946731 1946755 chr2L 1946807 1946831 5 76 3.0 0.0 1.5 2.0 100 chr2L 1946731 intergenic CG33673 - chr2L 1946781 intergenic CG33673 - chr2L 1946831 intergenic CG33673 - chr2L_5_1945001 chr2L_1945001 RAL-732 34 chr2L 2001784 2001817 chr2L 2001861 2001895 9 78 2.0 2.0 2.0 3.0 111 chr2L 2001784 intron,5` UTR CG33543 -,CR43464 + chr2L 2001840 intron,5` UTR CG33543 -,CR43464 + chr2L 2001895 intron,5` UTR CG33543 -,CR43464 + chr2L_9_2000001 chr2L_2000001 RAL-732 35 chr2L 2049225 2049239 chr2L 2049309 2049323 5 84 0.0 4.5 2.2 1.6 98 chr2L 2049225 intergenic not near genes chr2L 2049274 intergenic not near genes chr2L 2049323 intergenic not near genes chr2L_5_2045001 chr2L_2045001 RAL-732 36 chr2L 2097290 2097310 chr2L 2097455 2097478 7 168 1.5 1.0 1.2 3.2 188 chr2L 2097290 intron dpr3 - chr2L 2097384 intron dpr3 - chr2L 2097478 intron dpr3 - chr2L_7_2095001 chr2L_2095001 RAL-732 37 chr2L 2100375 2100400 chr2L 2109526 2109550 roo 6 9150 4.5 1.0 2.8 1.6 9175 chr2L 2100375 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109550 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-732 38 chr2L 2112121 2112141 chr2L 2119783 2119803 opus 4 7661 4.0 5.0 4.5 0.7 7682 chr2L 2112121 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119803 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-732 39 chr2L 2262309 2262326 chr2L 2262386 2262399 4 76 5.5 0.0 2.8 1.1 90 chr2L 2262309 intergenic not near genes chr2L 2262354 intergenic not near genes chr2L 2262399 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-732 40 chr2L 2294049 2294073 chr2L 2299250 2299278 copia 7 5204 3.0 3.5 3.2 1.7 5229 chr2L 2294049 intergenic not near genes chr2L 2296664 intergenic not near genes chr2L 2299278 intergenic not near genes chr2L_7_2295001 chr2L_2295001 RAL-732 41 chr2L 2310804 2310834 chr2L 2311074 2311104 7 270 2.0 2.5 2.2 2.2 300 chr2L 2310804 5` UTR CG9967 - chr2L 2310954 intron CG9967 - chr2L 2311104 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-732 42 chr2L 2317595 2317627 chr2L 2317672 2317704 6 77 7.0 6.0 6.5 0.8 109 chr2L 2317595 intron,intron CG9967 -,eys + chr2L 2317650 intron,intron CG9967 -,eys + chr2L 2317704 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-732 43 chr2L 2427381 2427401 chr2L 2427466 2427487 4 86 2.0 1.0 1.5 1.6 106 chr2L 2427381 3` UTR CR44912 - chr2L 2427434 3` UTR CR44912 - chr2L 2427487 3` UTR CR44912 - chr2L_4_2425001 chr2L_2425001 RAL-732 44 chr2L 2481976 2481997 chr2L 2482056 2482077 4 80 5.0 3.0 4.0 0.8 101 chr2L 2481976 intergenic not near genes chr2L 2482026 intergenic not near genes chr2L 2482077 intergenic not near genes chr2L_4_2480001 chr2L_2480001 RAL-732 45 chr2L 2565554 2565562 chr2L 2571627 2571635 297 4 6073 1.5 4.0 2.8 1.1 6081 chr2L 2565554 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571635 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-732 46 chr2L 2587814 2587846 chr2L 2587893 2587923 10 78 3.5 2.5 3.0 2.5 109 chr2L 2587814 intergenic not near genes chr2L 2587868 intergenic not near genes chr2L 2587923 intergenic not near genes chr2L_10_2585001 chr2L_2585001 RAL-732 47 chr2L 2667623 2667657 chr2L 2667702 2667736 10 78 3.5 1.5 2.5 2.9 113 chr2L 2667623 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667736 intergenic not near genes chr2L_10_2665001 chr2L_2665001 RAL-732 48 chr2L 2713512 2713549 chr2L 2713611 2713648 15 99 3.0 5.0 4.0 3.0 136 chr2L 2713512 intron CG31690 + chr2L 2713580 intron CG31690 + chr2L 2713648 intron CG31690 + chr2L_15_2710001 chr2L_2710001 RAL-732 49 chr2L 2793941 2793976 chr2L 2794021 2794056 13 80 2.0 2.0 2.0 4.3 115 chr2L 2793941 intron Syt1 - chr2L 2793998 intron Syt1 - chr2L 2794056 intron Syt1 - chr2L_13_2790001 chr2L_2790001 RAL-732 50 chr2L 2885373 2885397 chr2L 2885450 2885474 6 77 0.5 3.0 1.8 2.1 101 chr2L 2885373 intron NTPase - chr2L 2885424 intron NTPase - chr2L 2885474 intron NTPase - chr2L_6_2885001 chr2L_2885001 RAL-732 51 chr2L 2894347 2894360 chr2L 2895034 2895047 9 687 9.5 5.0 7.2 1.1 700 chr2L 2894347 intron lilli + chr2L 2894697 intron lilli + chr2L 2895047 intron lilli + chr2L_9_2890001 chr2L_2890001 RAL-732 52 chr2L 2933307 2933325 chr2L 2935484 2935502 pogo 7 2177 2.5 4.5 3.5 1.6 2195 chr2L 2933307 intron lilli + chr2L 2934404 intron lilli + chr2L 2935502 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-732 53 chr2L 2937416 2937453 chr2L 2937494 2937530 5 77 0.0 3.5 1.8 1.8 114 chr2L 2937416 intron lilli + chr2L 2937473 intron lilli + chr2L 2937530 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-732 54 chr2L 3026215 3026250 chr2L 3026871 3026906 17 656 40.0 22.0 31.0 0.5 691 chr2L 3026215 3` UTR CG3542 + chr2L 3026560 3` UTR CG3605 - chr2L 3026906 exon CG3605 - chr2L_17_3025001 chr2L_3025001 RAL-732 55 chr2L 3073040 3073052 chr2L 3078243 3078255 copia 6 5203 3.5 3.0 3.2 1.4 5215 chr2L 3073040 intron toc - chr2L 3075648 intron toc - chr2L 3078255 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-732 56 chr2L 3108865 3108899 chr2L 3108942 3108976 15 77 1.0 0.0 0.5 10.0 111 chr2L 3108865 intron toc - chr2L 3108920 intron toc - chr2L 3108976 intron toc - chr2L_15_3105001 chr2L_3105001 RAL-732 57 chr2L 3114436 3114453 chr2L 3114540 3114558 6 104 3.5 5.0 4.2 1.2 122 chr2L 3114436 intron toc - chr2L 3114497 intron toc - chr2L 3114558 intron toc - chr2L_6_3110001 chr2L_3110001 RAL-732 58 chr2L 3192208 3192241 chr2L 3192319 3192352 6 111 0.0 2.0 1.0 3.0 144 chr2L 3192208 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-732 59 chr2L 3202736 3202763 chr2L 3210165 3210192 mdg1 4 7429 0.0 1.0 0.5 2.7 7456 chr2L 3202736 intergenic not near genes chr2L 3206464 intergenic not near genes chr2L 3210192 intergenic CR45336 + chr2L_4_3205001 chr2L_3205001 RAL-732 60 chr2L 3251497 3251522 chr2L 3259062 3259087 springer 5 7565 2.0 3.5 2.8 1.3 7590 chr2L 3251497 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259087 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-732 61 chr2L 3291240 3291270 chr2L 3291320 3291350 10 80 0.5 1.5 1.0 5.0 110 chr2L 3291240 intergenic CG9664 - chr2L 3291295 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_10_3290001 chr2L_3290001 RAL-732 62 chr2L 3312085 3312115 chr2L 3312190 3312220 6 105 0.0 0.5 0.2 5.0 135 chr2L 3312085 intron CG3277 + chr2L 3312152 intron CG3277 + chr2L 3312220 intron CG3277 + chr2L_6_3310001 chr2L_3310001 RAL-732 63 chr2L 3323260 3323283 chr2L 3323365 3323390 12 107 1.5 3.5 2.5 3.4 130 chr2L 3323260 intergenic CG8837 + chr2L 3323325 intergenic CG8837 + chr2L 3323390 intergenic CG8837 + chr2L_12_3320001 chr2L_3320001 RAL-732 64 chr2L 3388604 3388623 chr2L 3388845 3388862 pogo 5 240 1.5 1.5 1.5 2.0 258 chr2L 3388604 intergenic CG42460 - chr2L 3388733 intergenic CG42460 - chr2L 3388862 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 RAL-732 65 chr2L 3393288 3393315 chr2L 3393386 3393413 7 98 1.0 3.5 2.2 2.2 125 chr2L 3393288 intergenic not near genes chr2L 3393350 intergenic not near genes chr2L 3393413 intergenic not near genes chr2L_7_3390001 chr2L_3390001 RAL-732 66 chr2L 3437151 3437167 chr2L 3437687 3437703 4 536 3.5 3.5 3.5 0.9 552 chr2L 3437151 intergenic not near genes chr2L 3437427 intergenic not near genes chr2L 3437703 intergenic not near genes chr2L_4_3435001 chr2L_3435001 RAL-732 67 chr2L 3490390 3490405 chr2L 3490635 3490650 4 246 1.5 2.0 1.8 1.4 260 chr2L 3490390 intron CG15414 - chr2L 3490520 intron CG15414 - chr2L 3490650 intron CG15414 - chr2L_4_3490001 chr2L_3490001 RAL-732 68 chr2L 3582881 3582912 chr2L 3582956 3582989 7 76 2.0 2.0 2.0 2.3 108 chr2L 3582881 intergenic not near genes chr2L 3582935 intergenic not near genes chr2L 3582989 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-732 69 chr2L 3634103 3634130 chr2L 3634185 3634212 10 82 3.5 3.0 3.2 2.4 109 chr2L 3634103 intron for - chr2L 3634158 intron for - chr2L 3634212 intron for - chr2L_10_3630001 chr2L_3630001 RAL-732 70 chr2L 3649787 3649798 chr2L 3654988 3655000 copia 4 5202 2.0 2.5 2.2 1.2 5213 chr2L 3649787 intron for - chr2L 3652394 intron for - chr2L 3655000 intron for - chr2L_4_3650001 chr2L_3650001 RAL-732 71 chr2L 3906036 3906057 chr2L 3906182 3906203 8 145 4.0 1.5 2.8 2.1 167 chr2L 3906036 intron fred - chr2L 3906120 intron fred - chr2L 3906203 intron fred - chr2L_8_3905001 chr2L_3905001 RAL-732 72 chr2L 3992442 3992476 chr2L 3992563 3992597 9 121 2.0 3.0 2.5 2.6 155 chr2L 3992442 intergenic not near genes chr2L 3992520 intergenic not near genes chr2L 3992597 intergenic not near genes chr2L_9_3990001 chr2L_3990001 RAL-732 73 chr2L 4066036 4066064 chr2L 4068861 4068889 Juan 5 2825 1.5 1.5 1.5 2.0 2853 chr2L 4066036 intron ed + chr2L 4067462 intron ed + chr2L 4068889 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-732 74 chr2L 4125247 4125277 chr2L 4125352 4125382 5 105 2.0 1.0 1.5 2.0 135 chr2L 4125247 intergenic not near genes chr2L 4125314 intergenic not near genes chr2L 4125382 intergenic not near genes chr2L_5_4125001 chr2L_4125001 RAL-732 75 chr2L 4152251 4152252 chr2L 16217660 16217660 4 12065408 4.0 12.5 8.2 0.4 12065409 chr2L 4152251 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_4_10180001 chr2L_10180001 RAL-732 76 chr2L 4166375 4166408 chr2L 4166458 4166491 13 83 2.5 1.5 2.0 4.3 116 chr2L 4166375 intergenic Or24a - chr2L 4166433 intergenic Or24a - chr2L 4166491 intergenic Or24a - chr2L_13_4165001 chr2L_4165001 RAL-732 77 chr2L 4179455 4179460 chr2L 4179569 4179574 5 114 0.0 4.0 2.0 1.7 119 chr2L 4179455 intergenic not near genes chr2L 4179514 intergenic not near genes chr2L 4179574 intergenic not near genes chr2L_5_4175001 chr2L_4175001 RAL-732 78 chr2L 4184496 4184508 chr2L 4184818 4184830 6 322 0.5 3.5 2.0 2.0 334 chr2L 4184496 intergenic not near genes chr2L 4184663 intergenic not near genes chr2L 4184830 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-732 79 chr2L 4309790 4309815 chr2L 4309874 4309899 7 84 1.5 2.5 2.0 2.3 109 chr2L 4309790 intron tutl + chr2L 4309844 intron tutl + chr2L 4309899 intron tutl + chr2L_7_4305001 chr2L_4305001 RAL-732 80 chr2L 4434521 4434546 chr2L 4434638 4434663 5 117 0.5 1.5 1.0 2.5 142 chr2L 4434521 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L 4434592 intron,intron,intron CG15431 -,CG34177 +,CG34178 + chr2L 4434663 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L_5_4430001 chr2L_4430001 RAL-732 81 chr2L 4601702 4601737 chr2L 4609143 4609178 mdg1 12 7441 4.0 1.5 2.8 3.2 7476 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-732 82 chr2L 4729868 4729893 chr2L 4729944 4729969 8 76 3.5 5.0 4.2 1.5 101 chr2L 4729868 intergenic not near genes chr2L 4729918 intergenic not near genes chr2L 4729969 intergenic not near genes chr2L_8_4725001 chr2L_4725001 RAL-732 83 chr2L 4819502 4819518 chr2L 4819625 4819641 7 123 1.5 2.0 1.8 2.5 139 chr2L 4819502 intergenic not near genes chr2L 4819572 intergenic not near genes chr2L 4819641 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-732 84 chr2L 4869474 4869498 chr2L 4869553 4869578 7 80 1.5 3.0 2.2 2.2 104 chr2L 4869474 intron pog + chr2L 4869526 intron pog + chr2L 4869578 intron pog + chr2L_7_4865001 chr2L_4865001 RAL-732 85 chr2L 4918172 4918197 chr2L 4923244 4923270 jockey 8 5073 3.0 3.0 3.0 2.0 5098 chr2L 4918172 intron hoe1 - chr2L 4920721 intron hoe1 - chr2L 4923270 intron hoe1 - chr2L_8_4920001 chr2L_4920001 RAL-732 86 chr2L 5021718 5021731 chr2L 5021794 5021807 5 76 4.0 0.5 2.2 1.6 89 chr2L 5021718 intron vkg - chr2L 5021762 intron vkg - chr2L 5021807 intron vkg - chr2L_5_5020001 chr2L_5020001 RAL-732 87 chr2L 5117301 5117314 chr2L 5117382 5117396 4 82 4.0 1.5 2.8 1.1 95 chr2L 5117301 intron Msp300 + chr2L 5117348 intron Msp300 + chr2L 5117396 intron Msp300 + chr2L_4_5115001 chr2L_5115001 RAL-732 88 chr2L 5120989 5121004 chr2L 5121083 5121096 4 94 5.0 5.5 5.2 0.6 107 chr2L 5120989 intron Msp300 + chr2L 5121042 intron Msp300 + chr2L 5121096 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-732 89 chr2L 5242936 5242936 chr2L 16217660 16217660 8 10974724 13.0 12.5 12.8 0.6 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_8_10730001 chr2L_10730001 RAL-732 90 chr2L 5418226 5418245 chr2L 5418397 5418413 5 170 1.0 3.0 2.0 1.7 187 chr2L 5418226 intergenic not near genes chr2L 5418320 intergenic not near genes chr2L 5418413 intergenic not near genes chr2L_5_5415001 chr2L_5415001 RAL-732 91 chr2L 5508533 5508559 chr2L 5508609 5508635 5 76 1.0 2.5 1.8 1.8 102 chr2L 5508533 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508635 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-732 92 chr2L 5511336 5511357 chr2L 5511419 5511440 5 83 1.0 2.0 1.5 2.0 104 chr2L 5511336 intergenic not near genes chr2L 5511388 intergenic not near genes chr2L 5511440 intergenic not near genes chr2L_5_5510001 chr2L_5510001 RAL-732 93 chr2L 5649702 5649716 chr2L 5649779 5649793 4 77 0.0 3.5 1.8 1.4 91 chr2L 5649702 intron CG31646 - chr2L 5649748 intron CG31646 - chr2L 5649793 intron CG31646 - chr2L_4_5645001 chr2L_5645001 RAL-732 94 chr2L 5695867 5695891 chr2L 5695959 5695982 5 92 2.0 2.0 2.0 1.7 115 chr2L 5695867 intergenic not near genes chr2L 5695924 intergenic not near genes chr2L 5695982 intergenic not near genes chr2L_5_5695001 chr2L_5695001 RAL-732 95 chr2L 5720266 5720284 chr2L 5720350 5720371 7 87 2.5 2.0 2.2 2.2 105 chr2L 5720266 intron CG11149 - chr2L 5720318 intron CG11149 - chr2L 5720371 intron CG11149 - chr2L_7_5720001 chr2L_5720001 RAL-732 96 chr2L 5765596 5765627 chr2L 5765676 5765708 11 81 0.5 2.5 1.5 4.4 112 chr2L 5765596 intron obst-E - chr2L 5765652 intron obst-E - chr2L 5765708 intron obst-E - chr2L_11_5765001 chr2L_5765001 RAL-732 97 chr2L 5814690 5814713 chr2L 5814773 5814795 4 83 3.0 1.5 2.2 1.2 105 chr2L 5814690 intergenic not near genes chr2L 5814742 intergenic not near genes chr2L 5814795 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-732 98 chr2L 5872699 5872728 chr2L 5872781 5872807 10 81 3.0 8.0 5.5 1.5 108 chr2L 5872699 intron rau - chr2L 5872753 intron rau - chr2L 5872807 intron rau - chr2L_10_5870001 chr2L_5870001 RAL-732 99 chr2L 5897597 5897628 chr2L 5897680 5897710 17 83 3.0 7.0 5.0 2.8 113 chr2L 5897597 intergenic not near genes chr2L 5897654 intergenic not near genes chr2L 5897710 intergenic not near genes chr2L_17_5895001 chr2L_5895001 RAL-732 100 chr2L 5904467 5904473 chr2L 5904547 5904552 4 80 1.5 0.0 0.8 2.2 85 chr2L 5904467 intron CG9021 - chr2L 5904510 intron CG9021 - chr2L 5904552 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-732 101 chr2L 6002436 6002470 chr2L 6002522 6002556 6 86 1.0 1.5 1.2 2.7 120 chr2L 6002436 3` UTR Tsp26A + chr2L 6002496 3` UTR Tsp26A + chr2L 6002556 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-732 102 chr2L 6020209 6020241 chr2L 6020293 6020323 11 83 1.5 3.5 2.5 3.1 114 chr2L 6020209 intergenic not near genes chr2L 6020266 intergenic not near genes chr2L 6020323 intergenic not near genes chr2L_11_6020001 chr2L_6020001 RAL-732 103 chr2L 6227982 6228011 chr2L 6228081 6228109 13 99 7.0 2.0 4.5 2.4 127 chr2L 6227982 intergenic not near genes chr2L 6228046 intergenic not near genes chr2L 6228109 intergenic not near genes chr2L_13_6225001 chr2L_6225001 RAL-732 104 chr2L 6283955 6283979 chr2L 6284066 6284090 8 111 2.0 4.0 3.0 2.0 135 chr2L 6283955 intron Ddr + chr2L 6284022 intron Ddr + chr2L 6284090 intron Ddr + chr2L_8_6280001 chr2L_6280001 RAL-732 105 chr2L 6363157 6363179 chr2L 6366078 6366100 Burdock 9 2921 1.5 2.5 2.0 3.0 2943 chr2L 6363157 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_9_6360001 chr2L_6360001 RAL-732 106 chr2L 6426859 6426888 chr2L 6445119 6445148 roo 9 18260 3.0 8.0 5.5 1.4 18289 chr2L 6426859 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-732 107 chr2L 6564845 6564878 chr2L 6564937 6564971 4 92 2.0 2.0 2.0 1.3 126 chr2L 6564845 3` UTR CG13766 - chr2L 6564908 3` UTR CG13766 - chr2L 6564971 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-732 108 chr2L 6626888 6626915 chr2L 6626973 6627000 11 85 3.5 2.5 3.0 2.8 112 chr2L 6626888 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627000 intron Oatp26F - chr2L_11_6625001 chr2L_6625001 RAL-732 109 chr2L 6740747 6740758 chr2L 6740834 6740845 4 87 0.0 9.0 4.5 0.7 98 chr2L 6740747 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740845 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-732 110 chr2L 6771997 6772015 chr2L 6772084 6772102 6 86 3.0 2.5 2.8 1.6 105 chr2L 6771997 intron CG11321 - chr2L 6772050 intron CG11321 - chr2L 6772102 intron CG11321 - chr2L_6_6770001 chr2L_6770001 RAL-732 111 chr2L 6799540 6799563 chr2L 6799628 6799651 7 88 4.0 1.0 2.5 2.0 111 chr2L 6799540 5` UTR CR43610 + chr2L 6799596 5` UTR CR43610 + chr2L 6799651 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-732 112 chr2L 6876779 6876803 chr2L 6882969 6882994 diver 5 6189 2.5 1.0 1.8 1.8 6215 chr2L 6876779 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882994 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-732 113 chr2L 6891450 6891469 chr2L 6891548 6891567 5 98 2.5 1.5 2.0 1.7 117 chr2L 6891450 intron Nlg2 + chr2L 6891508 intron Nlg2 + chr2L 6891567 intron Nlg2 + chr2L_5_6890001 chr2L_6890001 RAL-732 114 chr2L 6950179 6950190 chr2L 6950384 6950395 4 205 4.0 4.5 4.2 0.8 216 chr2L 6950179 5` UTR Gas41 - chr2L 6950287 intergenic Gas41 -,SA + chr2L 6950395 intergenic SA +,Gas41 - chr2L_4_6950001 chr2L_6950001 RAL-732 115 chr2L 7126859 7126869 chr2L 7126938 7126948 4 79 1.5 0.0 0.8 2.2 89 chr2L 7126859 intron Pvf3 - chr2L 7126904 intron Pvf3 - chr2L 7126948 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-732 116 chr2L 7198005 7198016 chr2L 7198084 7198094 4 78 4.5 2.5 3.5 0.9 89 chr2L 7198005 intron CG4502 - chr2L 7198050 intron CG4502 - chr2L 7198094 intron CG4502 - chr2L_4_7195001 chr2L_7195001 RAL-732 117 chr2L 7258902 7258916 chr2L 7258982 7258998 6 81 1.5 0.5 1.0 3.0 96 chr2L 7258902 intron Wnt4 - chr2L 7258950 intron Wnt4 - chr2L 7258998 intron Wnt4 - chr2L_6_7255001 chr2L_7255001 RAL-732 118 chr2L 7260410 7260436 chr2L 7260511 7260537 4 101 1.0 4.0 2.5 1.1 127 chr2L 7260410 intron Wnt4 - chr2L 7260474 intron Wnt4 - chr2L 7260537 intron Wnt4 - chr2L_4_7260001 chr2L_7260001 RAL-732 119 chr2L 7343325 7343358 chr2L 7350441 7350474 roo 8 7116 2.0 1.0 1.5 3.2 7149 chr2L 7343325 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-732 120 chr2L 7399311 7399335 chr2L 7399684 7399708 6 373 2.0 2.5 2.2 1.9 397 chr2L 7399311 intergenic not near genes chr2L 7399510 intergenic not near genes chr2L 7399708 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-732 121 chr2L 7555223 7555229 chr2L 7555300 7555305 5 77 0.0 3.0 1.5 2.0 82 chr2L 7555223 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555305 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-732 122 chr2L 7867571 7867597 chr2L 7867665 7867690 5 94 2.0 0.0 1.0 2.5 119 chr2L 7867571 intron Proc - chr2L 7867630 intron Proc - chr2L 7867690 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-732 123 chr2L 7915190 7915226 chr2L 7915268 7915302 8 78 1.5 2.0 1.8 2.9 112 chr2L 7915190 intron Snoo - chr2L 7915246 intron Snoo - chr2L 7915302 intron Snoo - chr2L_8_7915001 chr2L_7915001 RAL-732 124 chr2L 7959044 7959064 chr2L 7960455 7960474 pogo 7 1411 3.0 0.0 1.5 2.8 1430 chr2L 7959044 intron Snoo - chr2L 7959759 intron Snoo - chr2L 7960474 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-732 125 chr2L 7977090 7977109 chr2L 7984065 7984084 297 6 6975 2.5 2.5 2.5 1.7 6994 chr2L 7977090 intron Snoo - chr2L 7980587 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-732 126 chr2L 8003037 8003063 chr2L 8003119 8003145 6 82 1.0 2.0 1.5 2.4 108 chr2L 8003037 intron Wwox - chr2L 8003091 intron Wwox - chr2L 8003145 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-732 127 chr2L 8013615 8013634 chr2L 8018819 8018838 copia 4 5204 2.0 0.0 1.0 2.0 5223 chr2L 8013615 intron Tg + chr2L 8016226 intron Tg + chr2L 8018838 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-732 128 chr2L 8018823 8018837 chr2L 8023607 8023621 Doc 4 4784 0.0 1.0 0.5 2.7 4798 chr2L 8018823 intron Tg + chr2L 8021222 intron Tg + chr2L 8023621 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-732 129 chr2L 8044101 8044131 chr2L 8044178 8044210 8 78 2.0 3.5 2.8 2.1 109 chr2L 8044101 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044210 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-732 130 chr2L 8164581 8164616 chr2L 8164663 8164696 9 82 3.0 3.0 3.0 2.2 115 chr2L 8164581 intron Piezo + chr2L 8164638 intron Piezo + chr2L 8164696 intron Piezo + chr2L_9_8160001 chr2L_8160001 RAL-732 131 chr2L 8171274 8171289 chr2L 8171355 8171370 4 81 0.0 3.5 1.8 1.4 96 chr2L 8171274 intron Piezo + chr2L 8171322 intron Piezo + chr2L 8171370 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-732 132 chr2L 8184919 8184950 chr2L 8185009 8185041 7 91 1.0 4.5 2.8 1.8 122 chr2L 8184919 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185041 intron Piezo + chr2L_7_8180001 chr2L_8180001 RAL-732 133 chr2L 8452418 8452453 chr2L 8461589 8461624 roo 8 9171 1.5 4.0 2.8 2.1 9206 chr2L 8452418 intron fu12 - chr2L 8457021 intron fu12 - chr2L 8461624 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-732 134 chr2L 8507439 8507466 chr2L 8507521 8507548 7 82 3.0 3.0 3.0 1.8 109 chr2L 8507439 intergenic not near genes chr2L 8507494 intergenic not near genes chr2L 8507548 intergenic not near genes chr2L_7_8505001 chr2L_8505001 RAL-732 135 chr2L 8629008 8629030 chr2L 8629092 8629114 4 84 1.5 2.5 2.0 1.3 106 chr2L 8629008 intron Sema-1a + chr2L 8629061 intron Sema-1a + chr2L 8629114 intron Sema-1a + chr2L_4_8625001 chr2L_8625001 RAL-732 136 chr2L 8635857 8635867 chr2L 8635938 8635948 5 81 2.0 4.0 3.0 1.2 91 chr2L 8635857 intron Sema-1a + chr2L 8635902 intron Sema-1a + chr2L 8635948 intron Sema-1a + chr2L_5_8635001 chr2L_8635001 RAL-732 137 chr2L 8666531 8666555 chr2L 8666614 8666637 10 82 3.0 0.0 1.5 4.0 106 chr2L 8666531 3` UTR Sema-1a + chr2L 8666584 3` UTR Sema-1a + chr2L 8666637 3` UTR Sema-1a + chr2L_10_8665001 chr2L_8665001 RAL-732 138 chr2L 8689700 8689732 chr2L 8689797 8689829 15 97 1.5 2.0 1.8 5.4 129 chr2L 8689700 intron Hnf4 - chr2L 8689764 intron Hnf4 - chr2L 8689829 exon Hnf4 - chr2L_15_8685001 chr2L_8685001 RAL-732 139 chr2L 8723115 8723148 chr2L 8731492 8731525 Tirant 13 8377 2.0 3.0 2.5 3.7 8410 chr2L 8723115 intron raw - chr2L 8727320 intron raw - chr2L 8731525 intron raw - chr2L_13_8725001 chr2L_8725001 RAL-732 140 chr2L 8799801 8799831 chr2L 8799916 8799947 6 116 1.5 1.5 1.5 2.4 146 chr2L 8799801 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799947 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-732 141 chr2L 8815748 8815777 chr2L 8815825 8815857 7 80 2.5 3.0 2.8 1.8 109 chr2L 8815748 intergenic not near genes chr2L 8815802 intergenic not near genes chr2L 8815857 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-732 142 chr2L 9000290 9000312 chr2L 9007800 9007822 roo 9 7510 2.5 1.0 1.8 3.2 7532 chr2L 9000290 intergenic Try29F + chr2L 9004056 intergenic not near genes chr2L 9007822 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-732 143 chr2L 9084336 9084340 chr2L 16217660 16217661 16 7133321 10.0 12.5 11.2 1.3 7133325 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_16_12650001 chr2L_12650001 RAL-732 144 chr2L 9264344 9264377 chr2L 9264444 9264477 12 100 1.5 1.0 1.2 5.5 133 chr2L 9264344 intron Ggamma30A + chr2L 9264410 intron Ggamma30A + chr2L 9264477 intron Ggamma30A + chr2L_12_9260001 chr2L_9260001 RAL-732 145 chr2L 9277164 9277185 chr2L 9277254 9277277 6 92 3.0 4.0 3.5 1.3 113 chr2L 9277164 intron Ggamma30A + chr2L 9277220 intron Ggamma30A + chr2L 9277277 intron Ggamma30A + chr2L_6_9275001 chr2L_9275001 RAL-732 146 chr2L 9297378 9297400 chr2L 9297455 9297477 7 77 2.5 3.5 3.0 1.8 99 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297477 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-732 147 chr2L 9337460 9337490 chr2L 9337541 9337571 10 81 2.0 2.0 2.0 3.3 111 chr2L 9337460 intron Eaat1 + chr2L 9337516 intron Eaat1 + chr2L 9337571 intron Eaat1 + chr2L_10_9335001 chr2L_9335001 RAL-732 148 chr2L 9362146 9362153 chr2L 9362224 9362231 4 78 4.0 1.5 2.8 1.1 85 chr2L 9362146 intergenic not near genes chr2L 9362188 intergenic not near genes chr2L 9362231 intergenic not near genes chr2L_4_9360001 chr2L_9360001 RAL-732 149 chr2L 9393503 9393530 chr2L 9396470 9396497 jockey 8 2967 3.5 1.5 2.5 2.3 2994 chr2L 9393503 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396497 intron Shawl - chr2L_8_9395001 chr2L_9395001 RAL-732 150 chr2L 9441322 9441353 chr2L 9441426 9441457 10 104 3.0 1.0 2.0 3.3 135 chr2L 9441322 intron numb + chr2L 9441390 intron numb + chr2L 9441457 intron numb + chr2L_10_9440001 chr2L_9440001 RAL-732 151 chr2L 9456931 9456955 chr2L 9457012 9457035 9 81 2.0 3.0 2.5 2.6 104 chr2L 9456931 intron numb + chr2L 9456983 intron numb + chr2L 9457035 intron numb + chr2L_9_9455001 chr2L_9455001 RAL-732 152 chr2L 9490522 9490551 chr2L 9490602 9490631 7 80 2.0 1.5 1.8 2.5 109 chr2L 9490522 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490631 intergenic not near genes chr2L_7_9490001 chr2L_9490001 RAL-732 153 chr2L 9533864 9533884 chr2L 9533952 9533972 6 87 3.0 3.0 3.0 1.5 108 chr2L 9533864 intron Oatp30B + chr2L 9533918 intron Oatp30B + chr2L 9533972 intron Oatp30B + chr2L_6_9530001 chr2L_9530001 RAL-732 154 chr2L 9716447 9716479 chr2L 9716535 9716567 11 88 2.0 5.0 3.5 2.4 120 chr2L 9716447 3` UTR Nckx30C - chr2L 9716507 3` UTR Nckx30C - chr2L 9716567 3` UTR Nckx30C - chr2L_11_9715001 chr2L_9715001 RAL-732 155 chr2L 9730974 9730997 chr2L 9731057 9731080 5 83 3.5 2.5 3.0 1.2 106 chr2L 9730974 intron Nckx30C - chr2L 9731027 intron Nckx30C - chr2L 9731080 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-732 156 chr2L 9843202 9843230 chr2L 9843283 9843310 9 81 0.0 0.0 0.0 9.0 108 chr2L 9843202 intron nAChRalpha6 - chr2L 9843256 intron nAChRalpha6 - chr2L 9843310 intron nAChRalpha6 - chr2L_9_9840001 chr2L_9840001 RAL-732 157 chr2L 9861617 9861632 chr2L 9861804 9861819 5 186 1.0 3.0 2.0 1.7 202 chr2L 9861617 intron nAChRalpha6 - chr2L 9861718 intron nAChRalpha6 - chr2L 9861819 intron nAChRalpha6 - chr2L_5_9860001 chr2L_9860001 RAL-732 158 chr2L 9881013 9881025 chr2L 9881091 9881103 6 78 5.0 1.5 3.2 1.4 90 chr2L 9881013 intron nAChRalpha6 - chr2L 9881058 intron nAChRalpha6 - chr2L 9881103 intron nAChRalpha6 - chr2L_6_9880001 chr2L_9880001 RAL-732 159 chr2L 9973725 9973754 chr2L 9980844 9980873 HMS-Beagle 13 7118 4.5 3.0 3.8 2.7 7148 chr2L 9973725 intergenic not near genes chr2L 9977299 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_13_9975001 chr2L_9975001 RAL-732 160 chr2L 9986354 9986381 chr2L 9986449 9986475 8 95 1.0 3.5 2.2 2.5 121 chr2L 9986354 intron bib + chr2L 9986414 intron bib + chr2L 9986475 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-732 161 chr2L 9994721 9994756 chr2L 9994827 9994862 14 105 3.0 4.5 3.8 2.9 141 chr2L 9994721 exon bib + chr2L 9994792 3` UTR bib + chr2L 9994862 3` UTR bib + chr2L_14_9990001 chr2L_9990001 RAL-732 162 chr2L 10051724 10051753 chr2L 10051809 10051834 13 84 4.5 3.5 4.0 2.6 110 chr2L 10051724 5` UTR CR44874 + chr2L 10051779 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_13_10050001 chr2L_10050001 RAL-732 163 chr2L 10095634 10095652 chr2L 10095714 10095732 4 80 3.0 2.0 2.5 1.1 98 chr2L 10095634 intron CG44153 - chr2L 10095683 intron CG44153 - chr2L 10095732 intron CG44153 - chr2L_4_10095001 chr2L_10095001 RAL-732 164 chr2L 10103372 10103398 chr2L 10103472 10103497 7 100 4.0 0.0 2.0 2.3 125 chr2L 10103372 intron,intron CG44153 -,CG34109 + chr2L 10103434 intron,intron CG44153 -,CG34109 + chr2L 10103497 intron,intron CG44153 -,CG34109 + chr2L_7_10100001 chr2L_10100001 RAL-732 165 chr2L 10105280 10105299 chr2L 10105356 10105375 5 76 2.0 1.0 1.5 2.0 95 chr2L 10105280 intron,intron CG44153 -,CG34109 + chr2L 10105328 intron,intron CG44153 -,CG34109 + chr2L 10105375 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-732 166 chr2L 10156322 10156343 chr2L 10163792 10163813 blood 4 7470 2.5 2.5 2.5 1.1 7491 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163813 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-732 167 chr2L 10176023 10176025 chr2L 16071769 16071771 4 5895747 11.5 13.0 12.2 0.3 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-732 168 chr2L 10336053 10336087 chr2L 10336151 10336185 7 97 3.5 1.5 2.5 2.0 132 chr2L 10336053 exon GATAd + chr2L 10336119 exon GATAd + chr2L 10336185 exon GATAd + chr2L_7_10335001 chr2L_10335001 RAL-732 169 chr2L 10592860 10592871 chr2L 10600522 10600533 opus 4 7662 1.5 3.0 2.2 1.2 7673 chr2L 10592860 intron Trim9 + chr2L 10596696 intron Trim9 + chr2L 10600533 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-732 170 chr2L 10640643 10640672 chr2L 10640732 10640760 10 89 4.5 1.0 2.8 2.6 117 chr2L 10640643 exon CG31872 + chr2L 10640702 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_10_10640001 chr2L_10640001 RAL-732 171 chr2L 10647599 10647624 chr2L 10647724 10647749 8 125 3.5 4.0 3.8 1.7 150 chr2L 10647599 exon CG17097 + chr2L 10647674 exon CG17097 + chr2L 10647749 exon CG17097 + chr2L_8_10645001 chr2L_10645001 RAL-732 172 chr2L 10650025 10650041 chr2L 10650105 10650121 5 80 2.5 1.5 2.0 1.7 96 chr2L 10650025 exon CG17097 + chr2L 10650073 3` UTR CG17097 + chr2L 10650121 3` UTR CG17097 + chr2L_5_10650001 chr2L_10650001 RAL-732 173 chr2L 10702660 10702692 chr2L 10703418 10703450 9 758 8.0 10.0 9.0 0.9 790 chr2L 10702660 exon Lip2 - chr2L 10703055 intron Lip2 - chr2L 10703450 intron Lip2 - chr2L_9_10700001 chr2L_10700001 RAL-732 174 chr2L 10705940 10705957 chr2L 10706016 10706033 4 76 2.5 5.0 3.8 0.8 93 chr2L 10705940 intron Lip2 - chr2L 10705986 intron Lip2 - chr2L 10706033 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-732 175 chr2L 10791858 10791890 chr2L 10791938 10791969 10 80 5.0 2.5 3.8 2.1 111 chr2L 10791858 intron CG31869 - chr2L 10791914 intron CG31869 - chr2L 10791969 intron CG31869 - chr2L_10_10790001 chr2L_10790001 RAL-732 176 chr2L 10813025 10813041 chr2L 10813112 10813128 4 87 2.0 2.5 2.2 1.2 103 chr2L 10813025 intron Nos - chr2L 10813076 intron Nos - chr2L 10813128 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-732 177 chr2L 10836330 10836367 chr2L 10836410 10836448 12 81 3.0 0.0 1.5 4.8 118 chr2L 10836330 intron Nos - chr2L 10836389 intron Nos - chr2L 10836448 intron Nos - chr2L_12_10835001 chr2L_10835001 RAL-732 178 chr2L 10862844 10862870 chr2L 10864458 10864484 Rt1c 13 1614 4.0 3.0 3.5 2.9 1640 chr2L 10862844 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864484 3` UTR CR43807 - chr2L_13_10860001 chr2L_10860001 RAL-732 179 chr2L 10891453 10891480 chr2L 10891647 10891673 5 194 1.0 2.0 1.5 2.0 220 chr2L 10891453 intergenic not near genes chr2L 10891563 intergenic not near genes chr2L 10891673 intergenic not near genes chr2L_5_10890001 chr2L_10890001 RAL-732 180 chr2L 10927511 10927522 chr2L 10927592 10927603 5 81 7.0 4.5 5.8 0.7 92 chr2L 10927511 intron dpr2 - chr2L 10927557 intron dpr2 - chr2L 10927603 intron dpr2 - chr2L_5_10925001 chr2L_10925001 RAL-732 181 chr2L 10946951 10946969 chr2L 10956166 10956183 roo 7 9214 6.5 5.0 5.8 1.0 9232 chr2L 10946951 intron dpr2 - chr2L 10951567 intron dpr2 - chr2L 10956183 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-732 182 chr2L 11130491 11130528 chr2L 11130581 11130618 8 90 1.5 2.0 1.8 2.9 127 chr2L 11130491 5` UTR RfC38 - chr2L 11130554 5` UTR RfC38 - chr2L 11130618 5` UTR RfC38 - chr2L_8_11130001 chr2L_11130001 RAL-732 183 chr2L 11147799 11147829 chr2L 11148046 11148075 6 247 0.5 1.0 0.8 3.3 276 chr2L 11147799 intron Gyc32E - chr2L 11147937 intron Gyc32E - chr2L 11148075 intron Gyc32E - chr2L_6_11145001 chr2L_11145001 RAL-732 184 chr2L 11174574 11174660 chr2L 11174650 11174733 9 75 0.0 0.0 0.0 9.0 159 chr2L 11174574 intron Ca-beta - chr2L 11174654 intron Ca-beta - chr2L 11174733 intron Ca-beta - chr2L_9_11170001 chr2L_11170001 RAL-732 185 chr2L 11183791 11183809 chr2L 11183887 11183905 7 96 1.5 2.0 1.8 2.5 114 chr2L 11183791 intron Ca-beta - chr2L 11183848 intron Ca-beta - chr2L 11183905 intron Ca-beta - chr2L_7_11180001 chr2L_11180001 RAL-732 186 chr2L 11292374 11292408 chr2L 11292456 11292490 9 82 3.0 4.0 3.5 2.0 116 chr2L 11292374 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_9_11290001 chr2L_11290001 RAL-732 187 chr2L 11309009 11309039 chr2L 11309117 11309147 4 108 1.0 0.0 0.5 2.7 138 chr2L 11309009 intergenic not near genes chr2L 11309078 intergenic not near genes chr2L 11309147 intergenic not near genes chr2L_4_11305001 chr2L_11305001 RAL-732 188 chr2L 11311023 11311056 chr2L 11311130 11311162 12 106 4.0 5.5 4.8 2.1 139 chr2L 11311023 intergenic not near genes chr2L 11311092 intergenic not near genes chr2L 11311162 intergenic not near genes chr2L_12_11310001 chr2L_11310001 RAL-732 189 chr2L 11404785 11404812 chr2L 11404861 11404887 5 76 1.0 2.5 1.8 1.8 102 chr2L 11404785 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404887 intergenic not near genes chr2L_5_11400001 chr2L_11400001 RAL-732 190 chr2L 11418658 11418684 chr2L 11418737 11418761 8 78 0.0 4.0 2.0 2.7 103 chr2L 11418658 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418761 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-732 191 chr2L 11444258 11444283 chr2L 11444338 11444363 7 80 1.5 3.0 2.2 2.2 105 chr2L 11444258 intron salm - chr2L 11444310 intron salm - chr2L 11444363 intron salm - chr2L_7_11440001 chr2L_11440001 RAL-732 192 chr2L 11450124 11450154 chr2L 11450210 11450236 9 82 0.0 0.5 0.2 7.5 112 chr2L 11450124 intergenic not near genes chr2L 11450180 intergenic not near genes chr2L 11450236 intergenic not near genes chr2L_9_11450001 chr2L_11450001 RAL-732 193 chr2L 11491127 11491157 chr2L 11491208 11491238 5 81 1.0 2.5 1.8 1.8 111 chr2L 11491127 intergenic not near genes chr2L 11491182 intergenic not near genes chr2L 11491238 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-732 194 chr2L 11540581 11540603 chr2L 11547983 11548005 Tabor 4 7402 3.5 0.5 2.0 1.3 7424 chr2L 11540581 intergenic not near genes chr2L 11544293 intergenic not near genes chr2L 11548005 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-732 195 chr2L 11563636 11563666 chr2L 11568840 11568870 copia 7 5204 3.5 3.0 3.2 1.7 5234 chr2L 11563636 intergenic not near genes chr2L 11566253 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-732 196 chr2L 11614055 11614081 chr2L 11615549 11615576 hopper2 5 1494 1.5 2.5 2.0 1.7 1521 chr2L 11614055 intron kek2 + chr2L 11614816 intron kek2 + chr2L 11615576 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-732 197 chr2L 11625467 11625495 chr2L 11625576 11625604 9 109 3.0 1.0 2.0 3.0 137 chr2L 11625467 3` UTR kek2 + chr2L 11625536 3` UTR kek2 + chr2L 11625604 3` UTR kek2 + chr2L_9_11625001 chr2L_11625001 RAL-732 198 chr2L 11672152 11672165 chr2L 11672259 11672272 4 107 0.5 4.5 2.5 1.1 120 chr2L 11672152 intergenic not near genes chr2L 11672212 intergenic not near genes chr2L 11672272 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-732 199 chr2L 11713505 11713540 chr2L 11720973 11721008 blood 7 7468 1.5 2.5 2.0 2.3 7503 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-732 200 chr2L 11752868 11752889 chr2L 11753156 11753179 9 290 1.5 1.5 1.5 3.6 311 chr2L 11752868 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753179 3` UTR CG42470 - chr2L_9_11750001 chr2L_11750001 RAL-732 201 chr2L 11770604 11770617 chr2L 11770691 11770702 5 86 5.5 1.5 3.5 1.1 98 chr2L 11770604 intergenic not near genes chr2L 11770653 intergenic not near genes chr2L 11770702 intergenic not near genes chr2L_5_11770001 chr2L_11770001 RAL-732 202 chr2L 11773185 11773221 chr2L 11774245 11774278 11 1057 20.0 14.5 17.2 0.6 1093 chr2L 11773185 intergenic not near genes chr2L 11773732 intergenic not near genes chr2L 11774278 intergenic not near genes chr2L_11_11770001 chr2L_11770001 RAL-732 203 chr2L 11786902 11786937 chr2L 11787082 11787117 8 180 2.0 2.0 2.0 2.7 215 chr2L 11786902 intergenic not near genes chr2L 11787010 intergenic not near genes chr2L 11787117 intergenic not near genes chr2L_8_11785001 chr2L_11785001 RAL-732 204 chr2L 11962157 11962184 chr2L 11962239 11962266 5 82 2.0 2.0 2.0 1.7 109 chr2L 11962157 intron CR43314 - chr2L 11962212 intron CR43314 - chr2L 11962266 intron CR43314 - chr2L_5_11960001 chr2L_11960001 RAL-732 205 chr2L 12031389 12031409 chr2L 12031470 12031490 8 81 2.0 1.0 1.5 3.2 101 chr2L 12031389 intron dmGlut + chr2L 12031440 intron dmGlut + chr2L 12031490 intron dmGlut + chr2L_8_12030001 chr2L_12030001 RAL-732 206 chr2L 12067333 12067361 chr2L 12074384 12074409 297 6 7051 1.5 3.0 2.2 1.9 7076 chr2L 12067333 intergenic not near genes chr2L 12070871 intergenic not near genes chr2L 12074409 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-732 207 chr2L 12203393 12203408 chr2L 12203504 12203519 4 111 0.5 2.0 1.2 1.8 126 chr2L 12203393 intron aret + chr2L 12203456 intron aret + chr2L 12203519 intron aret + chr2L_4_12200001 chr2L_12200001 RAL-732 208 chr2L 12272172 12272197 chr2L 12272247 12272273 8 76 0.5 3.0 1.8 2.9 101 chr2L 12272172 intron aret + chr2L 12272222 intron aret + chr2L 12272273 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-732 209 chr2L 12481381 12481401 chr2L 12481463 12481483 6 82 1.0 2.5 1.8 2.1 102 chr2L 12481381 intron bun - chr2L 12481432 intron bun - chr2L 12481483 intron bun - chr2L_6_12480001 chr2L_12480001 RAL-732 210 chr2L 12487883 12487917 chr2L 12487964 12487998 9 81 3.5 4.5 4.0 1.8 115 chr2L 12487883 intron bun - chr2L 12487940 intron bun - chr2L 12487998 intron bun - chr2L_9_12485001 chr2L_12485001 RAL-732 211 chr2L 12490085 12490105 chr2L 12490224 12490244 4 139 0.5 1.5 1.0 2.0 159 chr2L 12490085 intron bun - chr2L 12490164 intron bun - chr2L 12490244 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-732 212 chr2L 12491498 12491510 chr2L 12491599 12491611 4 101 0.5 1.5 1.0 2.0 113 chr2L 12491498 intron bun - chr2L 12491554 intron bun - chr2L 12491611 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-732 213 chr2L 12529249 12529433 chr2L 12529382 12529509 8 104 0.5 0.5 0.5 5.3 260 chr2L 12529249 intron bun - chr2L 12529379 intron bun - chr2L 12529509 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-732 214 chr2L 12548087 12548116 chr2L 12548167 12548196 5 79 1.0 1.0 1.0 2.5 109 chr2L 12548087 intergenic not near genes chr2L 12548142 intergenic not near genes chr2L 12548196 intergenic not near genes chr2L_5_12545001 chr2L_12545001 RAL-732 215 chr2L 12699845 12699871 chr2L 12699922 12699941 6 75 3.5 3.5 3.5 1.3 96 chr2L 12699845 exon CG17036 - chr2L 12699893 exon CG17036 - chr2L 12699941 exon CG17036 - chr2L_6_12695001 chr2L_12695001 RAL-732 216 chr2L 12728917 12728946 chr2L 12729161 12729190 pogo 6 244 2.0 3.5 2.8 1.6 273 chr2L 12728917 intron MRP + chr2L 12729054 intron MRP + chr2L 12729190 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-732 217 chr2L 12731054 12731092 chr2L 12735821 12735859 F-element 5 4767 2.5 0.5 1.5 2.0 4805 chr2L 12731054 intron MRP + chr2L 12733456 intron MRP + chr2L 12735859 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-732 218 chr2L 12739174 12739193 chr2L 12743955 12743974 Doc 7 4781 3.0 4.5 3.8 1.5 4800 chr2L 12739174 exon MRP + chr2L 12741574 intron MRP + chr2L 12743974 intron MRP + chr2L_7_12740001 chr2L_12740001 RAL-732 219 chr2L 12759208 12759234 chr2L 12759303 12759329 11 95 2.0 2.5 2.2 3.4 121 chr2L 12759208 intergenic not near genes chr2L 12759268 intergenic not near genes chr2L 12759329 intergenic not near genes chr2L_11_12755001 chr2L_12755001 RAL-732 220 chr2L 12763172 12763191 chr2L 12763263 12763282 6 91 2.5 2.5 2.5 1.7 110 chr2L 12763172 intergenic not near genes chr2L 12763227 intergenic not near genes chr2L 12763282 intergenic not near genes chr2L_6_12760001 chr2L_12760001 RAL-732 221 chr2L 12791602 12791633 chr2L 12795277 12795308 F-element 7 3675 3.0 3.0 3.0 1.8 3706 chr2L 12791602 intergenic not near genes chr2L 12793455 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-732 222 chr2L 12861693 12861731 chr2L 12863160 12863198 hobo 10 1466 2.0 4.0 3.0 2.5 1505 chr2L 12861693 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-732 223 chr2L 12894016 12894046 chr2L 12895482 12895511 hobo 6 1465 1.0 2.5 1.8 2.1 1495 chr2L 12894016 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895511 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-732 224 chr2L 12933849 12933883 chr2L 12941316 12941350 blood 9 7467 4.5 1.5 3.0 2.2 7501 chr2L 12933849 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_9_12935001 chr2L_12935001 RAL-732 225 chr2L 12990021 12990042 chr2L 12990920 12990941 10 899 3.5 2.5 3.0 2.5 920 chr2L 12990021 intergenic not near genes chr2L 12990481 intergenic not near genes chr2L 12990941 intergenic not near genes chr2L_10_12990001 chr2L_12990001 RAL-732 226 chr2L 13036245 13036275 chr2L 13036487 13036516 X-element 6 242 2.0 1.5 1.8 2.1 271 chr2L 13036245 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036516 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-732 227 chr2L 13204317 13204334 chr2L 13204415 13204429 6 98 6.0 2.5 4.2 1.2 112 chr2L 13204317 intron Pect + chr2L 13204373 intron Pect + chr2L 13204429 intron Pect + chr2L_6_13200001 chr2L_13200001 RAL-732 228 chr2L 13215392 13215413 chr2L 13215667 13215688 6 275 2.0 1.5 1.8 2.1 296 chr2L 13215392 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215540 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215688 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_6_13215001 chr2L_13215001 RAL-732 229 chr2L 13231884 13231913 chr2L 13231995 13232024 12 111 3.5 4.0 3.8 2.5 140 chr2L 13231884 intergenic Prosalpha6T + chr2L 13231954 intergenic Prosalpha6T + chr2L 13232024 intergenic Prosalpha6T + chr2L_12_13230001 chr2L_13230001 RAL-732 230 chr2L 13346042 13346051 chr2L 13346125 13346134 4 83 5.5 2.0 3.8 0.8 92 chr2L 13346042 intergenic not near genes chr2L 13346088 intergenic not near genes chr2L 13346134 intergenic not near genes chr2L_4_13345001 chr2L_13345001 RAL-732 231 chr2L 13405646 13405676 chr2L 13410443 13410473 Doc 15 4797 2.0 4.0 3.0 3.8 4827 chr2L 13405646 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-732 232 chr2L 13449460 13449496 chr2L 13456896 13456931 Quasimodo 4 7436 0.0 1.0 0.5 2.7 7471 chr2L 13449460 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456931 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-732 233 chr2L 13481450 13481472 chr2L 13482057 13482079 jockey 8 607 2.0 4.5 3.2 1.9 629 chr2L 13481450 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-732 234 chr2L 13761287 13761317 chr2L 13761370 13761400 14 83 0.5 1.5 1.0 7.0 113 chr2L 13761287 intron TM9SF4 + chr2L 13761344 intron TM9SF4 + chr2L 13761400 intron TM9SF4 + chr2L_14_13760001 chr2L_13760001 RAL-732 235 chr2L 13761809 13761832 chr2L 13762918 13762943 Doc 5 1110 3.5 1.5 2.5 1.4 1134 chr2L 13761809 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762943 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-732 236 chr2L 13800179 13800198 chr2L 13800283 13800302 5 104 0.5 0.5 0.5 3.3 123 chr2L 13800179 intergenic not near genes chr2L 13800240 intergenic not near genes chr2L 13800302 intergenic not near genes chr2L_5_13800001 chr2L_13800001 RAL-732 237 chr2L 13804701 13804727 chr2L 13804782 13804810 7 85 4.0 0.5 2.2 2.2 109 chr2L 13804701 intron CAH1 + chr2L 13804756 intron CAH1 + chr2L 13804810 intron CAH1 + chr2L_7_13800001 chr2L_13800001 RAL-732 238 chr2L 13853089 13853117 chr2L 13862239 13862267 roo 9 9150 4.5 2.0 3.2 2.1 9178 chr2L 13853089 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-732 239 chr2L 13904578 13904610 chr2L 13904659 13904691 13 81 3.5 0.0 1.8 4.6 113 chr2L 13904578 intergenic Smg5 - chr2L 13904634 intergenic Smg5 - chr2L 13904691 intergenic Smg5 - chr2L_13_13900001 chr2L_13900001 RAL-732 240 chr2L 13981519 13981550 chr2L 13981610 13981641 11 91 2.5 1.0 1.8 3.9 122 chr2L 13981519 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981641 intron NimC2 + chr2L_11_13980001 chr2L_13980001 RAL-732 241 chr2L 14033250 14033274 chr2L 14033383 14033409 5 134 0.5 3.0 1.8 1.8 159 chr2L 14033250 3` UTR CR45284 - chr2L 14033330 3` UTR CR45284 - chr2L 14033409 3` UTR CR45284 - chr2L_5_14030001 chr2L_14030001 RAL-732 242 chr2L 14222314 14222331 chr2L 14222398 14222418 7 86 1.0 2.5 1.8 2.5 104 chr2L 14222314 intron Dyrk2 - chr2L 14222366 intron Dyrk2 - chr2L 14222418 intron Dyrk2 - chr2L_7_14220001 chr2L_14220001 RAL-732 243 chr2L 14236240 14236250 chr2L 14236337 14236347 4 97 4.0 0.0 2.0 1.3 107 chr2L 14236240 5` UTR CR44728 + chr2L 14236294 5` UTR CR44728 + chr2L 14236347 intergenic CR44728 + chr2L_4_14235001 chr2L_14235001 RAL-732 244 chr2L 14246294 14246311 chr2L 14246370 14246389 4 78 0.0 0.0 0.0 4.0 95 chr2L 14246294 intergenic not near genes chr2L 14246342 intergenic not near genes chr2L 14246389 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-732 245 chr2L 14502357 14502380 chr2L 14502446 14502469 8 88 1.0 5.0 3.0 2.0 112 chr2L 14502357 intergenic not near genes chr2L 14502413 intergenic not near genes chr2L 14502469 intergenic not near genes chr2L_8_14500001 chr2L_14500001 RAL-732 246 chr2L 14564203 14564231 chr2L 14564279 14564307 7 75 1.0 3.5 2.2 2.2 104 chr2L 14564203 intergenic CG3473 - chr2L 14564255 intergenic not near genes chr2L 14564307 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-732 247 chr2L 14588392 14588420 chr2L 14588546 14588574 9 154 2.0 1.5 1.8 3.2 182 chr2L 14588392 intergenic CG42680 - chr2L 14588483 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_9_14585001 chr2L_14585001 RAL-732 248 chr2L 14601980 14601991 chr2L 14602064 14602075 6 84 3.5 2.5 3.0 1.5 95 chr2L 14601980 exon osp - chr2L 14602028 intron osp - chr2L 14602075 intron osp - chr2L_6_14600001 chr2L_14600001 RAL-732 249 chr2L 14629560 14629575 chr2L 14629816 14629832 7 257 1.5 1.5 1.5 2.8 272 chr2L 14629560 intron osp - chr2L 14629696 intron osp - chr2L 14629832 intron osp - chr2L_7_14625001 chr2L_14625001 RAL-732 250 chr2L 14658681 14658718 chr2L 14658762 14658797 4 80 1.0 1.0 1.0 2.0 116 chr2L 14658681 intron osp - chr2L 14658739 intron osp - chr2L 14658797 intron osp - chr2L_4_14655001 chr2L_14655001 RAL-732 251 chr2L 14678353 14678384 chr2L 14678461 14678492 13 108 4.0 3.0 3.5 2.9 139 chr2L 14678353 intron osp - chr2L 14678422 intron osp - chr2L 14678492 intron osp - chr2L_13_14675001 chr2L_14675001 RAL-732 252 chr2L 14682403 14682412 chr2L 14682499 14682508 7 96 3.0 0.0 1.5 2.8 105 chr2L 14682403 intron osp - chr2L 14682456 intron osp - chr2L 14682508 intron osp - chr2L_7_14680001 chr2L_14680001 RAL-732 253 chr2L 14707206 14707233 chr2L 14707325 14707352 8 119 5.5 0.5 3.0 2.0 146 chr2L 14707206 intergenic not near genes chr2L 14707279 intergenic not near genes chr2L 14707352 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-732 254 chr2L 14716604 14716637 chr2L 14716681 14716715 4 78 0.5 0.5 0.5 2.7 111 chr2L 14716604 intergenic not near genes chr2L 14716660 intergenic not near genes chr2L 14716715 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-732 255 chr2L 14747768 14747780 chr2L 14747859 14747871 7 91 0.0 5.0 2.5 2.0 103 chr2L 14747768 intergenic not near genes chr2L 14747820 intergenic not near genes chr2L 14747871 intergenic not near genes chr2L_7_14745001 chr2L_14745001 RAL-732 256 chr2L 14768934 14768957 chr2L 14769012 14769035 5 78 0.5 0.5 0.5 3.3 101 chr2L 14768934 intergenic not near genes chr2L 14768984 intergenic not near genes chr2L 14769035 intergenic not near genes chr2L_5_14765001 chr2L_14765001 RAL-732 257 chr2L 14769370 14769383 chr2L 14769527 14769542 4 158 3.5 1.5 2.5 1.1 172 chr2L 14769370 intergenic not near genes chr2L 14769456 intergenic not near genes chr2L 14769542 intergenic not near genes chr2L_4_14765001 chr2L_14765001 RAL-732 258 chr2L 14803889 14803913 chr2L 14809092 14809116 copia 7 5203 2.0 3.5 2.8 1.8 5227 chr2L 14803889 intergenic not near genes chr2L 14806502 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-732 259 chr2L 14833794 14833826 chr2L 14833898 14833930 5 103 1.0 0.0 0.5 3.3 136 chr2L 14833794 intergenic not near genes chr2L 14833862 intergenic not near genes chr2L 14833930 intergenic not near genes chr2L_5_14830001 chr2L_14830001 RAL-732 260 chr2L 14840977 14841010 chr2L 14841064 14841097 10 87 0.5 2.5 1.5 4.0 120 chr2L 14840977 3` UTR CR43805 - chr2L 14841037 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_10_14840001 chr2L_14840001 RAL-732 261 chr2L 14889953 14889983 chr2L 14890377 14890407 jockey 8 424 3.5 3.0 3.2 1.9 454 chr2L 14889953 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890407 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-732 262 chr2L 14984386 14984392 chr2L 14991987 14991994 opus 4 7602 2.5 2.5 2.5 1.1 7608 chr2L 14984386 intron mol - chr2L 14988190 intron mol - chr2L 14991994 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-732 263 chr2L 15078068 15078101 chr2L 15078156 15078189 8 88 1.0 1.5 1.2 3.6 121 chr2L 15078068 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-732 264 chr2L 15103854 15103873 chr2L 15103951 15103970 4 97 3.5 0.5 2.0 1.3 116 chr2L 15103854 intergenic not near genes chr2L 15103912 intergenic not near genes chr2L 15103970 intergenic not near genes chr2L_4_15100001 chr2L_15100001 RAL-732 265 chr2L 15226373 15226390 chr2L 15226449 15226466 5 76 2.5 4.0 3.2 1.2 93 chr2L 15226373 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226466 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-732 266 chr2L 15506143 15506171 chr2L 15506227 15506255 12 83 3.5 5.5 4.5 2.2 112 chr2L 15506143 intergenic not near genes chr2L 15506199 intergenic not near genes chr2L 15506255 intergenic not near genes chr2L_12_15505001 chr2L_15505001 RAL-732 267 chr2L 15510937 15510956 chr2L 15511031 15511050 5 94 2.5 2.5 2.5 1.4 113 chr2L 15510937 intergenic not near genes chr2L 15510994 intergenic not near genes chr2L 15511050 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-732 268 chr2L 15535887 15535912 chr2L 15535977 15536002 4 90 1.5 1.5 1.5 1.6 115 chr2L 15535887 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536002 intergenic not near genes chr2L_4_15535001 chr2L_15535001 RAL-732 269 chr2L 15576262 15576280 chr2L 15576345 15576363 7 83 3.5 1.0 2.2 2.2 101 chr2L 15576262 intron kek3 + chr2L 15576312 intron kek3 + chr2L 15576363 intron kek3 + chr2L_7_15575001 chr2L_15575001 RAL-732 270 chr2L 15586411 15586440 chr2L 15593463 15593492 297 7 7052 2.0 0.0 1.0 3.5 7081 chr2L 15586411 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_7_15585001 chr2L_15585001 RAL-732 271 chr2L 15624937 15624966 chr2L 15625033 15625062 6 96 3.0 0.5 1.8 2.1 125 chr2L 15624937 intergenic not near genes chr2L 15625000 intergenic not near genes chr2L 15625062 intergenic not near genes chr2L_6_15620001 chr2L_15620001 RAL-732 272 chr2L 15636675 15636682 chr2L 15636751 15636758 4 76 3.0 0.0 1.5 1.6 83 chr2L 15636675 intergenic not near genes chr2L 15636716 intergenic not near genes chr2L 15636758 intergenic not near genes chr2L_4_15635001 chr2L_15635001 RAL-732 273 chr2L 15740676 15740710 chr2L 15740764 15740798 7 88 0.0 0.5 0.2 5.8 122 chr2L 15740676 intron CycE - chr2L 15740737 intron CycE - chr2L 15740798 5` UTR CycE - chr2L_7_15740001 chr2L_15740001 RAL-732 274 chr2L 15810368 15810388 chr2L 15810517 15810537 5 149 0.0 2.5 1.2 2.3 169 chr2L 15810368 intergenic CR44602 -,CG42876 - chr2L 15810452 intergenic CG42876 -,CR44602 - chr2L 15810537 intergenic CG42876 -,CR44602 - chr2L_5_15810001 chr2L_15810001 RAL-732 275 chr2L 15823352 15823364 chr2L 15823428 15823439 5 76 2.5 1.0 1.8 1.8 87 chr2L 15823352 intergenic CR44601 - chr2L 15823396 intergenic CR44601 - chr2L 15823439 intergenic CR44601 - chr2L_5_15820001 chr2L_15820001 RAL-732 276 chr2L 15871297 15871313 chr2L 15871380 15871396 5 83 3.5 1.5 2.5 1.4 99 chr2L 15871297 intergenic not near genes chr2L 15871346 intergenic not near genes chr2L 15871396 intergenic not near genes chr2L_5_15870001 chr2L_15870001 RAL-732 277 chr2L 15933219 15933229 chr2L 15936124 15936134 4 2905 14.5 10.0 12.2 0.3 2915 chr2L 15933219 intron beat-Ib - chr2L 15934676 intron beat-Ib - chr2L 15936134 intron beat-Ib - chr2L_4_15930001 chr2L_15930001 RAL-732 278 chr2L 15956025 15956054 chr2L 15957491 15957521 hobo 11 1467 6.5 2.5 4.5 2.0 1496 chr2L 15956025 intron beat-Ib - chr2L 15956773 intron beat-Ib - chr2L 15957521 intron beat-Ib - chr2L_11_15955001 chr2L_15955001 RAL-732 279 chr2L 16017648 16017675 chr2L 16017724 16017751 7 76 1.0 1.0 1.0 3.5 103 chr2L 16017648 intron beat-Ic + chr2L 16017700 intron beat-Ic + chr2L 16017751 intron beat-Ic + chr2L_7_16015001 chr2L_16015001 RAL-732 280 chr2L 16027393 16027429 chr2L 16027469 16027505 8 76 0.5 1.0 0.8 4.4 112 chr2L 16027393 intron beat-Ic + chr2L 16027449 intron beat-Ic + chr2L 16027505 intron beat-Ic + chr2L_8_16025001 chr2L_16025001 RAL-732 281 chr2L 16026145 16026172 chr2L 16027905 16027933 8 1760 17.5 11.5 14.5 0.5 1788 chr2L 16026145 intron beat-Ic + chr2L 16027039 intron beat-Ic + chr2L 16027933 intron beat-Ic + chr2L_8_16025001 chr2L_16025001 RAL-732 282 chr2L 16058131 16058149 chr2L 16058272 16058290 6 141 1.0 2.0 1.5 2.4 159 chr2L 16058131 intron beat-Ia + chr2L 16058210 intron beat-Ia + chr2L 16058290 intron beat-Ia + chr2L_6_16055001 chr2L_16055001 RAL-732 283 chr2L 16071771 16071771 chr2L 16217660 16217664 copia 24 145889 13.0 12.5 12.8 1.7 145893 chr2L 16071771 intron beat-Ia + chr2L 16144718 intergenic not near genes chr2L 16217664 intergenic not near genes chr2L_24_16140001 chr2L_16140001 RAL-732 284 chr2L 16098930 16098944 chr2L 16099018 16099032 4 88 1.5 2.5 2.0 1.3 102 chr2L 16098930 intergenic not near genes chr2L 16098981 intergenic not near genes chr2L 16099032 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-732 285 chr2L 16115529 16115546 chr2L 16115605 16115622 5 76 3.0 3.0 3.0 1.2 93 chr2L 16115529 intergenic not near genes chr2L 16115576 intergenic not near genes chr2L 16115622 intergenic not near genes chr2L_5_16115001 chr2L_16115001 RAL-732 286 chr2L 16197118 16197153 chr2L 16197794 16197829 9 676 1.5 0.5 1.0 4.5 711 chr2L 16197118 intergenic not near genes chr2L 16197474 intergenic not near genes chr2L 16197829 intergenic not near genes chr2L_9_16195001 chr2L_16195001 RAL-732 287 chr2L 9084338 9084340 chr2L 16217660 16217660 9 7133321 10.0 12.5 11.2 0.7 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-732 288 chr2L 15557166 15557166 chr2L 16217660 16217660 4 660494 10.0 12.5 11.2 0.3 660494 chr2L 15557166 intron kek3 + chr2L 15887413 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_15885001 chr2L_15885001 RAL-732 289 chr2L 16071768 16071771 chr2L 16217660 16217660 copia 9 145889 13.0 12.5 12.8 0.7 145892 chr2L 16071768 intron beat-Ia + chr2L 16144714 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-732 290 chr2L 16217660 16217660 chr2L 18622718 18622719 12 2405059 14.0 20.5 17.2 0.7 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_12_17420001 chr2L_17420001 RAL-732 291 chr2L 16217660 16217660 chr2L 19313783 19313783 6 3096123 14.0 10.0 12.0 0.5 3096123 chr2L 16217660 intergenic not near genes chr2L 17765722 intron CadN - chr2L 19313783 intergenic not near genes chr2L_6_17765001 chr2L_17765001 RAL-732 292 chr2L 16243697 16243843 chr2L 16243780 16243938 4 92 3.0 0.5 1.8 1.4 241 chr2L 16243697 exon CG42818 + chr2L 16243818 exon CG42818 + chr2L 16243938 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-732 293 chr2L 16263988 16264018 chr2L 16264079 16264109 10 91 4.0 1.0 2.5 2.9 121 chr2L 16263988 3` UTR crp - chr2L 16264048 3` UTR crp - chr2L 16264109 3` UTR crp - chr2L_10_16260001 chr2L_16260001 RAL-732 294 chr2L 16280253 16280280 chr2L 16281423 16281450 1360 9 1171 5.0 3.0 4.0 1.8 1197 chr2L 16280253 intron crp - chr2L 16280852 intron crp - chr2L 16281450 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-732 295 chr2L 16544118 16544139 chr2L 16544197 16544218 7 79 6.0 2.5 4.2 1.3 100 chr2L 16544118 intergenic not near genes chr2L 16544168 intergenic not near genes chr2L 16544218 intergenic not near genes chr2L_7_16540001 chr2L_16540001 RAL-732 296 chr2L 16583094 16583121 chr2L 16583181 16583209 7 88 1.0 1.0 1.0 3.5 115 chr2L 16583094 intron CG42389 + chr2L 16583152 intron CG42389 + chr2L 16583209 intron CG42389 + chr2L_7_16580001 chr2L_16580001 RAL-732 297 chr2L 16583553 16583582 chr2L 16583687 16583716 4 134 1.5 2.0 1.8 1.4 163 chr2L 16583553 intron CG42389 + chr2L 16583634 intron CG42389 + chr2L 16583716 intron CG42389 + chr2L_4_16580001 chr2L_16580001 RAL-732 298 chr2L 16594027 16594140 chr2L 16594103 16594230 5 79 0.0 0.0 0.0 5.0 203 chr2L 16594027 intron CG42389 + chr2L 16594128 intron CG42389 + chr2L 16594230 intron CG42389 + chr2L_5_16590001 chr2L_16590001 RAL-732 299 chr2L 16654707 16654731 chr2L 16654798 16654824 4 92 1.0 1.5 1.2 1.8 117 chr2L 16654707 intron CG42389 + chr2L 16654766 intron CG42389 + chr2L 16654824 intron CG42389 + chr2L_4_16650001 chr2L_16650001 RAL-732 300 chr2L 16670429 16670449 chr2L 16670506 16670523 5 76 1.0 2.0 1.5 2.0 94 chr2L 16670429 intron Trpgamma - chr2L 16670476 intron Trpgamma - chr2L 16670523 intron Trpgamma - chr2L_5_16670001 chr2L_16670001 RAL-732 301 chr2L 16841014 16841044 chr2L 16841091 16841121 6 77 1.0 1.5 1.2 2.7 107 chr2L 16841014 intron,intron SclA +,SclB + chr2L 16841068 intron,intron SclA +,SclB + chr2L 16841121 intron,intron SclA +,SclB + chr2L_6_16840001 chr2L_16840001 RAL-732 302 chr2L 16848130 16848137 chr2L 16848435 16848442 5 305 8.5 7.0 7.8 0.6 312 chr2L 16848130 intron CG13284 - chr2L 16848286 intron CG13284 - chr2L 16848442 intron CG13284 - chr2L_5_16845001 chr2L_16845001 RAL-732 303 chr2L 16873267 16873287 chr2L 16873351 16873369 4 83 0.5 0.0 0.2 3.3 102 chr2L 16873267 intron CR31781 + chr2L 16873318 intron CR31781 + chr2L 16873369 intron CR31781 + chr2L_4_16870001 chr2L_16870001 RAL-732 304 chr2L 16944211 16944232 chr2L 16944298 16944318 4 87 0.5 2.0 1.2 1.8 107 chr2L 16944211 intergenic not near genes chr2L 16944264 intergenic CR43053 - chr2L 16944318 intergenic CR43053 - chr2L_4_16940001 chr2L_16940001 RAL-732 305 chr2L 16958102 16958120 chr2L 16962889 16962908 Doc 4 4788 2.5 1.5 2.0 1.3 4806 chr2L 16958102 intergenic not near genes chr2L 16960505 intergenic not near genes chr2L 16962908 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-732 306 chr2L 17000117 17000151 chr2L 17000239 17000273 7 122 1.5 1.5 1.5 2.8 156 chr2L 17000117 intergenic not near genes chr2L 17000195 intergenic not near genes chr2L 17000273 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-732 307 chr2L 17018704 17018719 chr2L 17018780 17018795 7 76 3.0 0.0 1.5 2.8 91 chr2L 17018704 intergenic not near genes chr2L 17018750 intergenic not near genes chr2L 17018795 intergenic not near genes chr2L_7_17015001 chr2L_17015001 RAL-732 308 chr2L 17101900 17101914 chr2L 17101977 17101991 6 77 4.0 2.5 3.2 1.4 91 chr2L 17101900 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_6_17100001 chr2L_17100001 RAL-732 309 chr2L 17158724 17158743 chr2L 17158827 17158846 4 103 3.0 1.5 2.2 1.2 122 chr2L 17158724 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158785 intron,intron CG34106 +,beat-IIIa + chr2L 17158846 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-732 310 chr2L 17181452 17181472 chr2L 17181536 17181556 5 84 1.0 2.5 1.8 1.8 104 chr2L 17181452 intron Gr36c + chr2L 17181504 exon Gr36c + chr2L 17181556 exon Gr36c + chr2L_5_17180001 chr2L_17180001 RAL-732 311 chr2L 17199159 17199193 chr2L 17200626 17200660 hobo 7 1467 2.5 2.0 2.2 2.2 1501 chr2L 17199159 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200660 intron beat-IIIc - chr2L_7_17195001 chr2L_17195001 RAL-732 312 chr2L 17226736 17226762 chr2L 17226818 17226844 8 82 0.5 1.0 0.8 4.4 108 chr2L 17226736 intron beat-IIIc - chr2L 17226790 intron beat-IIIc - chr2L 17226844 intron beat-IIIc - chr2L_8_17225001 chr2L_17225001 RAL-732 313 chr2L 17264743 17264778 chr2L 17264823 17264858 13 80 1.5 3.5 2.5 3.7 115 chr2L 17264743 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264858 intergenic not near genes chr2L_13_17260001 chr2L_17260001 RAL-732 314 chr2L 17273197 17273222 chr2L 17277980 17278005 F-element 4 4783 4.5 1.5 3.0 1.0 4808 chr2L 17273197 intergenic not near genes chr2L 17275601 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-732 315 chr2L 17432023 17432049 chr2L 17432130 17432156 1360 5 107 0.0 0.5 0.2 4.2 133 chr2L 17432023 intron Dif - chr2L 17432090 intron Dif - chr2L 17432156 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-732 316 chr2L 17533436 17533443 chr2L 17533523 17533530 5 87 1.5 1.0 1.2 2.3 94 chr2L 17533436 intergenic not near genes chr2L 17533483 intergenic not near genes chr2L 17533530 intergenic not near genes chr2L_5_17530001 chr2L_17530001 RAL-732 317 chr2L 17571156 17571161 chr2L 17571239 17571244 5 83 0.0 2.0 1.0 2.5 88 chr2L 17571156 intergenic not near genes chr2L 17571200 intergenic not near genes chr2L 17571244 intergenic not near genes chr2L_5_17570001 chr2L_17570001 RAL-732 318 chr2L 17727544 17727566 chr2L 17727628 17727652 6 86 0.0 1.0 0.5 4.0 108 chr2L 17727544 intron CadN - chr2L 17727598 intron CadN - chr2L 17727652 intron CadN - chr2L_6_17725001 chr2L_17725001 RAL-732 319 chr2L 17784655 17784679 chr2L 17784753 17784777 5 98 0.0 3.0 1.5 2.0 122 chr2L 17784655 intergenic not near genes chr2L 17784716 intergenic not near genes chr2L 17784777 intergenic not near genes chr2L_5_17780001 chr2L_17780001 RAL-732 320 chr2L 17819926 17819956 chr2L 17825129 17825159 copia 6 5203 0.0 2.5 1.2 2.7 5233 chr2L 17819926 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825159 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-732 321 chr2L 17880002 17880017 chr2L 17880089 17880104 6 87 5.5 2.0 3.8 1.2 102 chr2L 17880002 intergenic not near genes chr2L 17880053 intergenic not near genes chr2L 17880104 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-732 322 chr2L 17944417 17944442 chr2L 17944580 17944605 7 163 2.0 3.0 2.5 2.0 188 chr2L 17944417 intergenic not near genes chr2L 17944511 intergenic not near genes chr2L 17944605 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-732 323 chr2L 17951946 17951978 chr2L 17953413 17953445 hobo 6 1467 2.0 4.0 3.0 1.5 1499 chr2L 17951946 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-732 324 chr2L 18051884 18051907 chr2L 18061031 18061054 roo 7 9147 1.5 3.5 2.5 2.0 9170 chr2L 18051884 intron rdo + chr2L 18056469 intron rdo + chr2L 18061054 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-732 325 chr2L 18087622 18087642 chr2L 18087806 18087826 4 184 2.0 2.5 2.2 1.2 204 chr2L 18087622 intergenic not near genes chr2L 18087724 intergenic not near genes chr2L 18087826 intergenic not near genes chr2L_4_18085001 chr2L_18085001 RAL-732 326 chr2L 18111246 18111263 chr2L 18111337 18111354 11 91 2.0 3.5 2.8 2.9 108 chr2L 18111246 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_11_18110001 chr2L_18110001 RAL-732 327 chr2L 18143470 18143499 chr2L 18143549 18143578 14 79 3.0 3.5 3.2 3.3 108 chr2L 18143470 intron Socs36E - chr2L 18143524 intron Socs36E - chr2L 18143578 intron Socs36E - chr2L_14_18140001 chr2L_18140001 RAL-732 328 chr2L 18254811 18254838 chr2L 18254911 18254938 7 100 2.5 0.5 1.5 2.8 127 chr2L 18254811 intron CG42750 - chr2L 18254874 intron CG42750 - chr2L 18254938 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-732 329 chr2L 18264066 18264094 chr2L 18264143 18264171 5 77 1.5 2.5 2.0 1.7 105 chr2L 18264066 intron CG42750 - chr2L 18264118 intron CG42750 - chr2L 18264171 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-732 330 chr2L 18274043 18274072 chr2L 18274129 18274158 5 86 3.0 0.5 1.8 1.8 115 chr2L 18274043 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274158 intron CG42750 - chr2L_5_18270001 chr2L_18270001 RAL-732 331 chr2L 18303981 18304003 chr2L 18304072 18304092 6 91 3.0 1.0 2.0 2.0 111 chr2L 18303981 intergenic not near genes chr2L 18304036 intergenic not near genes chr2L 18304092 intergenic not near genes chr2L_6_18300001 chr2L_18300001 RAL-732 332 chr2L 18334617 18334644 chr2L 18334702 18334728 5 85 1.5 1.5 1.5 2.0 111 chr2L 18334617 intron Fas3 + chr2L 18334672 intron Fas3 + chr2L 18334728 intron Fas3 + chr2L_5_18330001 chr2L_18330001 RAL-732 333 chr2L 18408028 18408048 chr2L 18412812 18412832 Doc 6 4784 1.0 0.0 0.5 4.0 4804 chr2L 18408028 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412832 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-732 334 chr2L 18449385 18449416 chr2L 18449486 18449517 4 101 1.5 1.5 1.5 1.6 132 chr2L 18449385 intergenic bsf -,ncm - chr2L 18449451 intergenic bsf -,ncm - chr2L 18449517 3` UTR bsf - chr2L_4_18445001 chr2L_18445001 RAL-732 335 chr2L 16217660 16217660 chr2L 18622718 18622719 7 2405059 14.0 20.5 17.2 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_7_17420001 chr2L_17420001 RAL-732 336 chr2L 18875642 18875666 chr2L 18875719 18875744 9 78 1.5 1.5 1.5 3.6 102 chr2L 18875642 intron tup - chr2L 18875693 intron tup - chr2L 18875744 intron tup - chr2L_9_18875001 chr2L_18875001 RAL-732 337 chr2L 18876866 18876873 chr2L 18876944 18876951 4 78 2.5 1.5 2.0 1.3 85 chr2L 18876866 intron tup - chr2L 18876908 intron tup - chr2L 18876951 intron tup - chr2L_4_18875001 chr2L_18875001 RAL-732 338 chr2L 18883857 18883886 chr2L 18883939 18883968 5 82 2.5 2.0 2.2 1.6 111 chr2L 18883857 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883968 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-732 339 chr2L 18898401 18898421 chr2L 18898483 18898503 10 82 3.5 1.0 2.2 3.1 102 chr2L 18898401 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898503 intergenic not near genes chr2L_10_18895001 chr2L_18895001 RAL-732 340 chr2L 18926579 18926591 chr2L 18926686 18926696 7 107 2.0 0.5 1.2 3.2 117 chr2L 18926579 intron ssp3 - chr2L 18926638 intron ssp3 - chr2L 18926696 intron ssp3 - chr2L_7_18925001 chr2L_18925001 RAL-732 341 chr2L 19024096 19024096 chr2L 21768291 21768294 5 2744197 18.5 13.0 15.8 0.3 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-732 342 chr2L 19024097 19024097 chr2L 21768291 21768294 4 2744195 19.0 13.0 16.0 0.2 2744197 chr2L 19024097 3` UTR CR43700 - chr2L 20396196 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-732 343 chr2L 19070270 19070300 chr2L 19070362 19070393 12 93 4.0 0.5 2.2 3.8 123 chr2L 19070270 intergenic CG10702 - chr2L 19070332 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_12_19070001 chr2L_19070001 RAL-732 344 chr2L 19147376 19147400 chr2L 19154411 19154435 297 6 7035 2.0 2.0 2.0 2.0 7059 chr2L 19147376 intron brat + chr2L 19150906 intron brat + chr2L 19154435 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-732 345 chr2L 19163533 19163552 chr2L 19163616 19163636 5 83 3.0 2.0 2.5 1.4 103 chr2L 19163533 intron brat + chr2L 19163584 intron brat + chr2L 19163636 intron brat + chr2L_5_19160001 chr2L_19160001 RAL-732 346 chr2L 19232590 19232619 chr2L 19232809 19232836 5 219 3.0 2.0 2.5 1.4 246 chr2L 19232590 intergenic not near genes chr2L 19232713 intergenic not near genes chr2L 19232836 intergenic not near genes chr2L_5_19230001 chr2L_19230001 RAL-732 347 chr2L 19345014 19345047 chr2L 19357222 19357256 blood 7 12209 1.0 2.5 1.8 2.5 12242 chr2L 19345014 intron dnt - chr2L 19351135 intron dnt - chr2L 19357256 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-732 348 chr2L 19357547 19357564 chr2L 19357637 19357653 5 90 5.0 1.5 3.2 1.2 106 chr2L 19357547 intron dnt - chr2L 19357600 intron dnt - chr2L 19357653 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-732 349 chr2L 19361881 19361910 chr2L 19361968 19361997 10 87 3.5 6.0 4.8 1.7 116 chr2L 19361881 intron dnt - chr2L 19361939 intron dnt - chr2L 19361997 intron dnt - chr2L_10_19360001 chr2L_19360001 RAL-732 350 chr2L 19374492 19374512 chr2L 19374601 19374621 4 109 3.5 0.0 1.8 1.4 129 chr2L 19374492 intergenic not near genes chr2L 19374556 intergenic not near genes chr2L 19374621 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-732 351 chr2L 19405621 19405632 chr2L 19405711 19405722 5 90 3.0 0.5 1.8 1.8 101 chr2L 19405621 intron Pax - chr2L 19405672 intron Pax - chr2L 19405722 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-732 352 chr2L 19544589 19544624 chr2L 19544666 19544700 8 76 4.0 4.5 4.2 1.5 111 chr2L 19544589 exon ref(2)P + chr2L 19544644 exon ref(2)P + chr2L 19544700 exon ref(2)P + chr2L_8_19540001 chr2L_19540001 RAL-732 353 chr2L 19558516 19558541 chr2L 19558620 19558644 5 104 1.5 0.0 0.8 2.8 128 chr2L 19558516 intron Tep5 + chr2L 19558580 intron Tep5 + chr2L 19558644 intron Tep5 + chr2L_5_19555001 chr2L_19555001 RAL-732 354 chr2L 19560007 19560038 chr2L 19560260 19560290 10 252 2.0 4.0 3.0 2.5 283 chr2L 19560007 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-732 355 chr2L 19560835 19560856 chr2L 19560914 19560936 7 80 2.5 0.0 1.2 3.2 101 chr2L 19560835 intron Tep5 + chr2L 19560886 exon Tep5 + chr2L 19560936 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-732 356 chr2L 19561359 19561368 chr2L 19561500 19561506 4 140 1.0 5.5 3.2 1.0 147 chr2L 19561359 exon Tep5 + chr2L 19561432 exon Tep5 + chr2L 19561506 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-732 357 chr2L 19601572 19601585 chr2L 19601649 19601662 4 77 3.0 1.0 2.0 1.3 90 chr2L 19601572 intron,intron Lar +,CR44978 - chr2L 19601617 intron,intron Lar +,CR44978 - chr2L 19601662 intron,intron Lar +,CR44978 - chr2L_4_19600001 chr2L_19600001 RAL-732 358 chr2L 19620093 19620122 chr2L 19621082 19621111 jockey 13 989 4.5 5.5 5.0 2.2 1018 chr2L 19620093 intron Lar + chr2L 19620602 intron Lar + chr2L 19621111 intron Lar + chr2L_13_19620001 chr2L_19620001 RAL-732 359 chr2L 19652576 19652597 chr2L 19674010 19674031 opus 6 21434 6.0 2.0 4.0 1.2 21455 chr2L 19652576 intron Lar + chr2L 19663304 intron Lar + chr2L 19674031 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-732 360 chr2L 19690345 19690355 chr2L 19690423 19690433 5 77 1.0 4.0 2.5 1.4 88 chr2L 19690345 intron Lar + chr2L 19690389 intron Lar + chr2L 19690433 intron Lar + chr2L_5_19690001 chr2L_19690001 RAL-732 361 chr2L 19703536 19703566 chr2L 19712672 19712702 roo 9 9136 2.5 3.0 2.8 2.4 9166 chr2L 19703536 intron Lar + chr2L 19708119 intron Lar + chr2L 19712702 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-732 362 chr2L 19762815 19762838 chr2L 19763057 19763080 pogo 5 242 2.5 2.0 2.2 1.6 265 chr2L 19762815 intron fbp - chr2L 19762948 intron fbp - chr2L 19763080 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-732 363 chr2L 19837279 19837308 chr2L 19837359 19837387 12 80 2.0 2.5 2.2 3.8 108 chr2L 19837279 intron sick + chr2L 19837333 intron sick + chr2L 19837387 intron sick + chr2L_12_19835001 chr2L_19835001 RAL-732 364 chr2L 19846249 19846275 chr2L 19846330 19846356 9 81 0.0 5.0 2.5 2.6 107 chr2L 19846249 intron sick + chr2L 19846302 intron sick + chr2L 19846356 intron sick + chr2L_9_19845001 chr2L_19845001 RAL-732 365 chr2L 19911296 19911325 chr2L 19911384 19911413 10 88 2.5 3.0 2.8 2.6 117 chr2L 19911296 intron,3` UTR sick +,CR43097 - chr2L 19911354 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-732 366 chr2L 19935246 19935261 chr2L 19935320 19935338 4 76 0.5 3.5 2.0 1.3 92 chr2L 19935246 intron sick + chr2L 19935292 intron sick + chr2L 19935338 intron sick + chr2L_4_19935001 chr2L_19935001 RAL-732 367 chr2L 20005889 20005900 chr2L 20010964 20010976 flea 5 5076 2.5 5.5 4.0 1.0 5087 chr2L 20005889 intron CG43861 - chr2L 20008432 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-732 368 chr2L 20022093 20022099 chr2L 20022206 20022212 4 112 2.0 1.5 1.8 1.4 119 chr2L 20022093 intergenic not near genes chr2L 20022152 intergenic not near genes chr2L 20022212 intergenic not near genes chr2L_4_20020001 chr2L_20020001 RAL-732 369 chr2L 20272118 20272137 chr2L 20282829 20282848 copia 6 10711 4.0 4.5 4.2 1.2 10730 chr2L 20272118 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282848 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-732 370 chr2L 20296517 20296539 chr2L 20296598 20296619 6 81 0.0 1.5 0.8 3.3 102 chr2L 20296517 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296619 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-732 371 chr2L 20303161 20303188 chr2L 20310628 20310655 blood 4 7468 0.0 1.0 0.5 2.7 7494 chr2L 20303161 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310655 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-732 372 chr2L 20310889 20310918 chr2L 20310968 20310997 7 79 0.0 2.0 1.0 3.5 108 chr2L 20310889 intergenic spir + chr2L 20310943 intergenic spir + chr2L 20310997 intergenic spir + chr2L_7_20310001 chr2L_20310001 RAL-732 373 chr2L 20367553 20367581 chr2L 20367690 20367717 12 137 2.0 3.0 2.5 3.4 164 chr2L 20367553 intergenic not near genes chr2L 20367635 intergenic not near genes chr2L 20367717 intergenic not near genes chr2L_12_20365001 chr2L_20365001 RAL-732 374 chr2L 20372848 20372876 chr2L 20372927 20372955 14 79 1.5 1.5 1.5 5.6 107 chr2L 20372848 exon Ugt37a1 - chr2L 20372902 exon Ugt37a1 - chr2L 20372955 exon Ugt37a1 - chr2L_14_20370001 chr2L_20370001 RAL-732 375 chr2L 20498695 20498708 chr2L 20498794 20498807 4 99 1.5 4.0 2.8 1.1 112 chr2L 20498695 intergenic not near genes chr2L 20498751 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-732 376 chr2L 20576217 20576247 chr2L 20583685 20583715 blood 11 7468 3.0 2.0 2.5 3.1 7498 chr2L 20576217 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_11_20575001 chr2L_20575001 RAL-732 377 chr2L 20611236 20611266 chr2L 20611325 20611355 11 89 0.0 4.5 2.2 3.4 119 chr2L 20611236 intron CR44909 - chr2L 20611296 intron CR44909 - chr2L 20611355 intron CR44909 - chr2L_11_20610001 chr2L_20610001 RAL-732 378 chr2L 20615041 20615069 chr2L 20616084 20616113 9 1043 1.0 0.0 0.5 6.0 1072 chr2L 20615041 intron,exon CR44909 -,CG15475 + chr2L 20615577 intron CR44909 - chr2L 20616113 intron CR44909 - chr2L_9_20615001 chr2L_20615001 RAL-732 379 chr2L 20835814 20835836 chr2L 20836531 20836553 Quasimodo 7 717 3.0 2.0 2.5 2.0 739 chr2L 20835814 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836553 intergenic Spn38F - chr2L_7_20835001 chr2L_20835001 RAL-732 380 chr2L 20901485 20901487 chr2L 20902649 20902651 1360 4 1164 0.0 6.0 3.0 1.0 1166 chr2L 20901485 intron,intron CG43739 -,sky - chr2L 20902068 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-732 381 chr2L 20946947 20946962 chr2L 20947033 20947048 5 86 3.5 5.0 4.2 1.0 101 chr2L 20946947 intergenic CR44606 - chr2L 20946998 intergenic CR44606 - chr2L 20947048 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-732 382 chr2L 20967083 20967103 chr2L 20967169 20967189 5 86 1.5 3.0 2.2 1.6 106 chr2L 20967083 3` UTR CG42238 - chr2L 20967136 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_5_20965001 chr2L_20965001 RAL-732 383 chr2L 20976660 20976670 chr2L 20981475 20981485 X-element 4 4815 4.0 4.5 4.2 0.8 4825 chr2L 20976660 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981485 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-732 384 chr2L 20984737 20984770 chr2L 20984829 20984862 10 92 1.0 2.5 1.8 3.6 125 chr2L 20984737 intron CG42238 - chr2L 20984800 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_10_20980001 chr2L_20980001 RAL-732 385 chr2L 20986905 20986934 chr2L 20987242 20987271 12 337 3.0 2.5 2.8 3.2 366 chr2L 20986905 intron CG42238 - chr2L 20987088 intron CG42238 - chr2L 20987271 intron CG42238 - chr2L_12_20985001 chr2L_20985001 RAL-732 386 chr2L 20991037 20991065 chr2L 20991113 20991143 6 78 2.5 2.0 2.2 1.9 106 chr2L 20991037 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991143 intron CG42238 - chr2L_6_20990001 chr2L_20990001 RAL-732 387 chr2L 21020273 21020308 chr2L 21023950 21023985 NOF 6 3677 3.0 2.0 2.5 1.7 3712 chr2L 21020273 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-732 388 chr2L 21041136 21041168 chr2L 21049396 21049429 Tirant 7 8261 4.0 2.5 3.2 1.7 8293 chr2L 21041136 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-732 389 chr2L 21093454 21093482 chr2L 21093553 21093581 4 99 1.5 5.0 3.2 1.0 127 chr2L 21093454 intron CG14397 + chr2L 21093518 intron CG14397 + chr2L 21093581 intron CG14397 + chr2L_4_21090001 chr2L_21090001 RAL-732 390 chr2L 21113688 21113718 chr2L 21113781 21113811 9 92 3.0 4.0 3.5 2.0 123 chr2L 21113688 intron Nhe2 + chr2L 21113750 intron Nhe2 + chr2L 21113811 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-732 391 chr2L 21286604 21286634 chr2L 21286682 21286712 7 78 1.0 1.5 1.2 3.2 108 chr2L 21286604 exon Mio - chr2L 21286658 intron Mio - chr2L 21286712 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-732 392 chr2L 21597029 21597059 chr2L 21604773 21604803 roo 4 7744 1.5 1.0 1.2 1.8 7774 chr2L 21597029 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604803 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-732 393 chr2L 21653193 21653225 chr2L 21656497 21656529 invader4 5 3304 0.5 1.0 0.8 2.8 3336 chr2L 21653193 intergenic not near genes chr2L 21654861 intergenic not near genes chr2L 21656529 intergenic not near genes chr2L_5_21650001 chr2L_21650001 RAL-732 394 chr2L 21754676 21754688 chr2L 21754756 21754769 4 80 0.5 1.5 1.0 2.0 93 chr2L 21754676 intron step - chr2L 21754722 intron step - chr2L 21754769 intron step - chr2L_4_21750001 chr2L_21750001 RAL-732 395 chr2L 21755494 21755521 chr2L 21755618 21755645 8 124 2.0 2.0 2.0 2.7 151 chr2L 21755494 intron step - chr2L 21755570 intron step - chr2L 21755645 intron step - chr2L_8_21755001 chr2L_21755001 RAL-732 396 chr2L 21981693 21981714 chr2L 21990858 21990879 roo 9 9165 1.0 1.0 1.0 4.5 9186 chr2L 21981693 exon CG2528 - chr2L 21986286 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-732 397 chr2L 22215906 22215934 chr2L 22215992 22216020 5 86 1.5 3.0 2.2 1.6 114 chr2L 22215906 intergenic not near genes chr2L 22215963 intergenic not near genes chr2L 22216020 intergenic not near genes chr2L_5_22215001 chr2L_22215001 RAL-732 398 chr2L 22239426 22239459 chr2L 22239506 22239540 8 81 2.0 2.5 2.2 2.5 114 chr2L 22239426 3` UTR CR43765 - chr2L 22239483 3` UTR CR43765 - chr2L 22239540 3` UTR CR43765 - chr2L_8_22235001 chr2L_22235001 RAL-732 399 chr2L 22258612 22258628 chr2L 22260735 22260752 G6 6 2124 6.5 2.5 4.5 1.1 2140 chr2L 22258612 intergenic Tif-IA + chr2L 22259682 intergenic not near genes chr2L 22260752 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-732 400 chr2L 22312403 22312431 chr2L 22312490 22312518 11 87 2.5 0.5 1.5 4.4 115 chr2L 22312403 intron CG17018 + chr2L 22312460 intron CG17018 + chr2L 22312518 intron CG17018 + chr2L_11_22310001 chr2L_22310001 RAL-732 401 chr2L 22545978 22546010 chr2L 22546074 22546106 15 96 4.0 5.0 4.5 2.7 128 chr2L 22545978 intron CG17490 + chr2L 22546042 intron CG17490 + chr2L 22546106 intron CG17490 + chr2L_15_22545001 chr2L_22545001 RAL-732 402 chr2L 22548921 22548941 chr2L 22550146 22550166 1360 6 1225 0.0 2.5 1.2 2.7 1245 chr2L 22548921 intergenic CG17490 + chr2L 22549544 intergenic not near genes chr2L 22550166 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-732 403 chr2L 22581973 22581997 chr2L 22583762 22583786 S-element 4 1789 1.5 0.5 1.0 2.0 1813 chr2L 22581973 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583786 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-732 404 chr2L 22674071 22674096 chr2L 22674148 22674173 5 77 1.5 1.0 1.2 2.3 102 chr2L 22674071 intron CG40006 - chr2L 22674122 intron CG40006 - chr2L 22674173 intron CG40006 - chr2L_5_22670001 chr2L_22670001 RAL-732 405 chr2L 22679803 22679828 chr2L 22684574 22684600 F-element 5 4772 1.0 2.5 1.8 1.8 4797 chr2L 22679803 intron CG40006 - chr2L 22682202 intron CG40006 - chr2L 22684600 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-732 406 chr2L 22693923 22693951 chr2L 22694010 22694038 9 87 1.0 4.0 2.5 2.6 115 chr2L 22693923 intron CG40006 - chr2L 22693980 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_9_22690001 chr2L_22690001 RAL-732 407 chr2R 529325 529354 chr2R 537950 537979 Max-element 10 8625 1.5 2.5 2.0 3.3 8654 chr2R 529325 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_10_530001 chr2R_530001 RAL-732 408 chr2R 552754 552783 chr2R 553970 554000 1360 7 1218 1.0 2.0 1.5 2.8 1246 chr2R 552754 intron CG40378 + chr2R 553377 intron CG40378 + chr2R 554000 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-732 409 chr2R 1090276 1090293 chr2R 1090369 1090386 5 93 2.5 0.0 1.2 2.3 110 chr2R 1090276 intron rl + chr2R 1090331 intron rl + chr2R 1090386 intron rl + chr2R_5_1090001 chr2R_1090001 RAL-732 410 chr2R 1317839 1317865 chr2R 1318148 1318174 9 308 24.5 16.0 20.2 0.4 335 chr2R 1317839 intergenic not near genes chr2R 1318006 intergenic not near genes chr2R 1318174 intergenic not near genes chr2R_9_1315001 chr2R_1315001 RAL-732 411 chr2R 1365866 1365895 chr2R 1365978 1366007 10 112 2.0 3.5 2.8 2.6 141 chr2R 1365866 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366007 intron l(2)41Ab + chr2R_10_1365001 chr2R_1365001 RAL-732 412 chr2R 2015139 2015151 chr2R 2015216 2015228 5 77 1.5 1.0 1.2 2.3 89 chr2R 2015139 intron CG17684 - chr2R 2015184 intron CG17684 - chr2R 2015228 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-732 413 chr2R 2374757 2374765 chr2R 2374848 2374856 4 91 1.0 0.0 0.5 2.7 99 chr2R 2374757 intergenic not near genes chr2R 2374806 intergenic not near genes chr2R 2374856 intergenic not near genes chr2R_4_2370001 chr2R_2370001 RAL-732 414 chr2R 2498989 2499012 chr2R 2508136 2508159 roo 4 9147 2.0 3.5 2.8 1.1 9170 chr2R 2498989 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508159 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-732 415 chr2R 2508311 2508340 chr2R 2508447 2508478 7 137 1.0 1.0 1.0 3.5 167 chr2R 2508311 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508478 intron MFS17 - chr2R_7_2505001 chr2R_2505001 RAL-732 416 chr2R 3144095 3144106 chr2R 3393373 3393384 Doc 4 249278 12.0 3.0 7.5 0.5 249289 chr2R 3144095 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393384 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-732 417 chr2R 3291953 3292099 chr2R 3915122 3915260 4 623163 7.0 9.5 8.2 0.4 623307 chr2R 3291953 intergenic not near genes chr2R 3603606 intergenic not near genes chr2R 3915260 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-732 418 chr2R 3818932 3818941 chr2R 3819048 3819057 7 116 10.5 3.5 7.0 0.9 125 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819057 intergenic not near genes chr2R_7_3815001 chr2R_3815001 RAL-732 419 chr2R 4312951 4312985 chr2R 4313035 4313069 10 84 2.0 1.0 1.5 4.0 118 chr2R 4312951 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313069 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-732 420 chr2R 4603341 4603371 chr2R 4603424 4603454 12 83 2.5 4.0 3.2 2.9 113 chr2R 4603341 intron p120ctn + chr2R 4603398 intron p120ctn + chr2R 4603454 intron p120ctn + chr2R_12_4600001 chr2R_4600001 RAL-732 421 chr2R 4622951 4622987 chr2R 4624110 4624146 1360 10 1158 2.5 1.5 2.0 3.3 1195 chr2R 4622951 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-732 422 chr2R 4750342 4750377 chr2R 4751499 4751534 1360 4 1156 0.5 1.0 0.8 2.2 1192 chr2R 4750342 intron conu + chr2R 4750938 intron conu + chr2R 4751534 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-732 423 chr2R 4819841 4819871 chr2R 4819930 4819959 11 89 1.5 0.5 1.0 5.5 118 chr2R 4819841 exon CG17528 - chr2R 4819900 exon CG17528 - chr2R 4819959 intron CG17528 - chr2R_11_4815001 chr2R_4815001 RAL-732 424 chr2R 4940959 4940980 chr2R 4943409 4943429 6 2450 19.0 12.0 15.5 0.4 2470 chr2R 4940959 intron Ir41a + chr2R 4942194 intron Ir41a + chr2R 4943429 intron Ir41a + chr2R_6_4940001 chr2R_4940001 RAL-732 425 chr2R 5038527 5038534 chr2R 5039324 5039331 6 797 7.5 1.5 4.5 1.1 804 chr2R 5038527 intergenic not near genes chr2R 5038929 intergenic not near genes chr2R 5039331 intergenic not near genes chr2R_6_5035001 chr2R_5035001 RAL-732 426 chr2R 5075229 5075246 chr2R 5075357 5075374 8 128 4.0 0.0 2.0 2.7 145 chr2R 5075229 intergenic not near genes chr2R 5075302 intergenic not near genes chr2R 5075374 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-732 427 chr2R 5075363 5075369 chr2R 5075778 5075785 4 416 0.0 6.0 3.0 1.0 422 chr2R 5075363 intergenic not near genes chr2R 5075574 intergenic not near genes chr2R 5075785 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-732 428 chr2R 5209786 5209814 chr2R 5210319 5210347 9 533 3.0 3.5 3.2 2.1 561 chr2R 5209786 intron Nipped-A - chr2R 5210066 intron Nipped-A - chr2R 5210347 intron Nipped-A - chr2R_9_5210001 chr2R_5210001 RAL-732 429 chr2R 5303490 5303509 chr2R 5303578 5303596 4 88 16.5 12.5 14.5 0.3 106 chr2R 5303490 intergenic not near genes chr2R 5303543 intergenic not near genes chr2R 5303596 intergenic not near genes chr2R_4_5300001 chr2R_5300001 RAL-732 430 chr2R 5342832 5342854 chr2R 5342929 5342951 5 97 1.0 2.0 1.5 2.0 119 chr2R 5342832 intergenic not near genes chr2R 5342892 intergenic not near genes chr2R 5342951 intergenic not near genes chr2R_5_5340001 chr2R_5340001 RAL-732 431 chr2R 5417998 5418026 chr2R 5420630 5420658 Burdock 5 2632 2.0 2.0 2.0 1.7 2660 chr2R 5417998 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420658 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-732 432 chr2R 5455774 5455804 chr2R 5455851 5455882 10 78 1.5 2.5 2.0 3.3 108 chr2R 5455774 3` UTR laccase2 + chr2R 5455828 3` UTR laccase2 + chr2R 5455882 3` UTR laccase2 + chr2R_10_5455001 chr2R_5455001 RAL-732 433 chr2R 5463254 5463273 chr2R 5468701 5468720 6 5448 13.0 8.0 10.5 0.5 5466 chr2R 5463254 intergenic not near genes chr2R 5465987 intergenic not near genes chr2R 5468720 intron CG30440 - chr2R_6_5465001 chr2R_5465001 RAL-732 434 chr2R 5472367 5472386 chr2R 5472462 5472481 4 95 4.0 2.5 3.2 1.0 114 chr2R 5472367 intron CG30440 - chr2R 5472424 intron CG30440 - chr2R 5472481 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-732 435 chr2R 5491712 5491747 chr2R 5491852 5491888 7 141 2.5 2.0 2.2 2.2 176 chr2R 5491712 intron CG30440 - chr2R 5491800 intron CG30440 - chr2R 5491888 intron CG30440 - chr2R_7_5490001 chr2R_5490001 RAL-732 436 chr2R 5509520 5509543 chr2R 5509616 5509639 4 96 2.0 1.0 1.5 1.6 119 chr2R 5509520 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509639 intron CG30438 + chr2R_4_5505001 chr2R_5505001 RAL-732 437 chr2R 5543199 5543223 chr2R 5547283 5547307 invader1 4 4084 0.0 2.0 1.0 2.0 4108 chr2R 5543199 intron CG30438 + chr2R 5545253 intron CG30438 + chr2R 5547307 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-732 438 chr2R 5581401 5581423 chr2R 5627610 5627632 7 46209 0.5 5.5 3.0 1.8 46231 chr2R 5581401 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627632 intergenic not near genes chr2R_7_5600001 chr2R_5600001 RAL-732 439 chr2R 5861287 5861308 chr2R 5861408 5861429 7 121 1.5 2.5 2.0 2.3 142 chr2R 5861287 intergenic dpr12 + chr2R 5861358 intergenic not near genes chr2R 5861429 intergenic not near genes chr2R_7_5860001 chr2R_5860001 RAL-732 440 chr2R 5869276 5869306 chr2R 5874352 5874382 flea 4 5076 1.5 3.5 2.5 1.1 5106 chr2R 5869276 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874382 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-732 441 chr2R 5878923 5878956 chr2R 5879003 5879036 9 80 2.5 1.0 1.8 3.2 113 chr2R 5878923 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879036 intergenic CG44438 - chr2R_9_5875001 chr2R_5875001 RAL-732 442 chr2R 5886679 5886685 chr2R 5886799 5886806 5 121 3.5 1.0 2.2 1.6 127 chr2R 5886679 intergenic CR44125 + chr2R 5886742 intergenic CR44125 + chr2R 5886806 intergenic CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-732 443 chr2R 6088371 6088388 chr2R 6088463 6088480 8 93 2.5 3.0 2.8 2.1 109 chr2R 6088371 intergenic not near genes chr2R 6088426 intergenic not near genes chr2R 6088480 intergenic not near genes chr2R_8_6085001 chr2R_6085001 RAL-732 444 chr2R 6096726 6096751 chr2R 6101924 6101942 BS 11 5197 3.0 3.0 3.0 2.8 5216 chr2R 6096726 intron EcR - chr2R 6099334 intron EcR - chr2R 6101942 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-732 445 chr2R 6108678 6108707 chr2R 6108786 6108815 9 108 3.5 3.5 3.5 2.0 137 chr2R 6108678 intron EcR - chr2R 6108746 intron EcR - chr2R 6108815 intron EcR - chr2R_9_6105001 chr2R_6105001 RAL-732 446 chr2R 6129328 6129347 chr2R 6129406 6129425 4 78 3.0 1.5 2.2 1.2 97 chr2R 6129328 intron EcR - chr2R 6129376 intron EcR - chr2R 6129425 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-732 447 chr2R 6132482 6132511 chr2R 6132576 6132605 4 94 2.5 1.5 2.0 1.3 123 chr2R 6132482 intron EcR - chr2R 6132544 intron EcR - chr2R 6132605 intron EcR - chr2R_4_6130001 chr2R_6130001 RAL-732 448 chr2R 6546717 6546750 chr2R 6546818 6546851 5 101 1.0 3.5 2.2 1.6 134 chr2R 6546717 intron jing + chr2R 6546784 intron jing + chr2R 6546851 intron jing + chr2R_5_6545001 chr2R_6545001 RAL-732 449 chr2R 6579782 6579801 chr2R 6584867 6584887 flea 5 5086 3.0 4.0 3.5 1.1 5105 chr2R 6579782 intron jing + chr2R 6582334 intron jing + chr2R 6584887 intron jing + chr2R_5_6580001 chr2R_6580001 RAL-732 450 chr2R 6624055 6624083 chr2R 6624148 6624176 9 93 2.0 3.5 2.8 2.4 121 chr2R 6624055 intron CG33919 - chr2R 6624116 exon CG33919 - chr2R 6624176 exon CG33919 - chr2R_9_6620001 chr2R_6620001 RAL-732 451 chr2R 6624432 6624463 chr2R 6624516 6624547 13 84 1.5 2.5 2.0 4.3 115 chr2R 6624432 exon CG33919 - chr2R 6624490 intron CG33919 - chr2R 6624547 exon CG33919 - chr2R_13_6620001 chr2R_6620001 RAL-732 452 chr2R 6633204 6633232 chr2R 6633281 6633309 8 77 1.5 3.0 2.2 2.5 105 chr2R 6633204 intergenic Vha16-1 -,Trap1 - chr2R 6633256 intergenic Vha16-1 -,Trap1 - chr2R 6633309 intergenic Vha16-1 -,Trap1 - chr2R_8_6630001 chr2R_6630001 RAL-732 453 chr2R 6699605 6699621 chr2R 6699689 6699706 5 85 2.0 1.0 1.5 2.0 101 chr2R 6699605 intergenic Rab2 + chr2R 6699656 intergenic Rab2 + chr2R 6699706 intergenic Rab2 + chr2R_5_6695001 chr2R_6695001 RAL-732 454 chr2R 6825359 6825381 chr2R 6825443 6825467 10 86 5.5 2.5 4.0 2.0 108 chr2R 6825359 intergenic not near genes chr2R 6825413 intergenic not near genes chr2R 6825467 intergenic not near genes chr2R_10_6825001 chr2R_6825001 RAL-732 455 chr2R 6843875 6843889 chr2R 6843954 6843968 4 79 3.5 5.0 4.2 0.8 93 chr2R 6843875 intergenic not near genes chr2R 6843922 intergenic not near genes chr2R 6843968 intergenic not near genes chr2R_4_6840001 chr2R_6840001 RAL-732 456 chr2R 6896212 6896237 chr2R 6896289 6896314 7 77 2.5 1.0 1.8 2.5 102 chr2R 6896212 intron CG30158 + chr2R 6896263 intron CG30158 + chr2R 6896314 intron CG30158 + chr2R_7_6895001 chr2R_6895001 RAL-732 457 chr2R 6948087 6948108 chr2R 6948163 6948184 4 76 0.0 1.5 0.8 2.2 97 chr2R 6948087 intron,intron mim -,CheB42c - chr2R 6948136 intron,intron mim -,CheB42c - chr2R 6948184 intron,intron mim -,CheB42c - chr2R_4_6945001 chr2R_6945001 RAL-732 458 chr2R 6975687 6975710 chr2R 6975770 6975793 5 83 1.5 2.0 1.8 1.8 106 chr2R 6975687 3` UTR vimar - chr2R 6975740 3` UTR vimar - chr2R 6975793 3` UTR vimar - chr2R_5_6975001 chr2R_6975001 RAL-732 459 chr2R 6978807 6978840 chr2R 6978949 6978982 10 142 2.0 2.0 2.0 3.3 175 chr2R 6978807 intron vimar - chr2R 6978894 intron vimar - chr2R 6978982 intron vimar - chr2R_10_6975001 chr2R_6975001 RAL-732 460 chr2R 7067968 7067992 chr2R 7068052 7068076 8 83 2.5 3.5 3.0 2.0 108 chr2R 7067968 intergenic CG12836 + chr2R 7068022 intergenic CG12836 + chr2R 7068076 intergenic CG12836 + chr2R_8_7065001 chr2R_7065001 RAL-732 461 chr2R 7160569 7160577 chr2R 7160647 7160655 4 78 2.5 3.0 2.8 1.1 86 chr2R 7160569 intron pk + chr2R 7160612 intron pk + chr2R 7160655 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-732 462 chr2R 7235818 7235850 chr2R 7240910 7240942 jockey 11 5092 4.0 2.5 3.2 2.6 5124 chr2R 7235818 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_11_7235001 chr2R_7235001 RAL-732 463 chr2R 7269834 7269863 chr2R 7273942 7273972 20 4109 48.5 45.0 46.8 0.4 4138 chr2R 7269834 intergenic not near genes chr2R 7271903 intergenic Br140 - chr2R 7273972 exon Br140 - chr2R_20_7270001 chr2R_7270001 RAL-732 464 chr2R 7328128 7328152 chr2R 7328239 7328261 5 110 0.5 1.0 0.8 2.8 133 chr2R 7328128 intron,intron Dscam1 -,CR45129 + chr2R 7328194 intron,intron Dscam1 -,CR45129 + chr2R 7328261 intron,intron Dscam1 -,CR45129 + chr2R_5_7325001 chr2R_7325001 RAL-732 465 chr2R 7417909 7418167 chr2R 7417995 7418246 11 81 2.5 5.5 4.0 2.2 337 chr2R 7417909 intergenic not near genes chr2R 7418078 intergenic not near genes chr2R 7418246 intergenic not near genes chr2R_11_7415001 chr2R_7415001 RAL-732 466 chr2R 7434891 7434904 chr2R 7439192 7439205 Juan 5 4301 3.5 2.5 3.0 1.2 4314 chr2R 7434891 intergenic so + chr2R 7437048 intergenic not near genes chr2R 7439205 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-732 467 chr2R 7478584 7478612 chr2R 7478668 7478696 7 84 2.0 4.0 3.0 1.8 112 chr2R 7478584 intergenic wech - chr2R 7478640 intergenic wech - chr2R 7478696 intergenic wech - chr2R_7_7475001 chr2R_7475001 RAL-732 468 chr2R 7608408 7608435 chr2R 7613611 7613638 I-element 8 5203 3.5 0.0 1.8 2.9 5230 chr2R 7608408 intron CG1358 - chr2R 7611023 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_8_7610001 chr2R_7610001 RAL-732 469 chr2R 7623812 7623844 chr2R 7623999 7624031 11 187 3.0 4.0 3.5 2.4 219 chr2R 7623812 intron CG43340 + chr2R 7623922 intron CG43340 + chr2R 7624031 intron CG43340 + chr2R_11_7620001 chr2R_7620001 RAL-732 470 chr2R 7812243 7812268 chr2R 7812319 7812344 4 76 1.0 2.5 1.8 1.4 101 chr2R 7812243 intergenic CG1550 -,CG1882 + chr2R 7812294 intergenic CG1882 +,CG1550 - chr2R 7812344 intergenic CG1882 +,CG1550 - chr2R_4_7810001 chr2R_7810001 RAL-732 471 chr2R 7815675 7815695 chr2R 7822144 7822163 Burdock 6 6469 3.5 1.0 2.2 1.9 6488 chr2R 7815675 intergenic CG1882 + chr2R 7818919 intergenic not near genes chr2R 7822163 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-732 472 chr2R 7869194 7869221 chr2R 7873980 7874005 Doc 7 4786 3.5 1.5 2.5 2.0 4811 chr2R 7869194 intron Dgk - chr2R 7871600 intron Dgk - chr2R 7874005 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-732 473 chr2R 7884378 7884396 chr2R 7884486 7884504 9 108 5.0 2.0 3.5 2.0 126 chr2R 7884378 intron Dgk - chr2R 7884441 intron Dgk - chr2R 7884504 intron Dgk - chr2R_9_7880001 chr2R_7880001 RAL-732 474 chr2R 7897142 7897154 chr2R 7897230 7897243 4 89 0.0 6.5 3.2 1.0 101 chr2R 7897142 intron CG30377 + chr2R 7897192 intron CG30377 + chr2R 7897243 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-732 475 chr2R 7919978 7920004 chr2R 7924495 7924528 5 4520 15.5 31.0 23.2 0.2 4550 chr2R 7919978 intron Cul1 + chr2R 7922253 exon Or43b - chr2R 7924528 exon Kdm4A - chr2R_5_7920001 chr2R_7920001 RAL-732 476 chr2R 7952179 7952306 chr2R 7952281 7952394 8 95 0.0 0.0 0.0 8.0 215 chr2R 7952179 intron CG14764 - chr2R 7952286 intron CG14764 - chr2R 7952394 intron CG14764 - chr2R_8_7950001 chr2R_7950001 RAL-732 477 chr2R 8015649 8015679 chr2R 8017672 8017702 5 2023 1.0 5.0 3.0 1.2 2053 chr2R 8015649 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-732 478 chr2R 8151700 8151714 chr2R 8151778 8151792 4 78 1.5 2.0 1.8 1.4 92 chr2R 8151700 intron,intron Lpin -,kermit - chr2R 8151746 intron,intron Lpin -,kermit - chr2R 8151792 intron,intron Lpin -,kermit - chr2R_4_8150001 chr2R_8150001 RAL-732 479 chr2R 8209604 8209616 chr2R 8209681 8209690 5 76 6.5 4.0 5.2 0.8 86 chr2R 8209604 exon LRP1 + chr2R 8209647 intron LRP1 + chr2R 8209690 intron LRP1 + chr2R_5_8205001 chr2R_8205001 RAL-732 480 chr2R 8277636 8277667 chr2R 8277731 8277762 12 94 2.5 3.5 3.0 3.0 126 chr2R 8277636 5` UTR CR44280 + chr2R 8277699 5` UTR CR44280 + chr2R 8277762 5` UTR CR44280 + chr2R_12_8275001 chr2R_8275001 RAL-732 481 chr2R 8297429 8297439 chr2R 8297507 8297518 4 79 3.5 4.0 3.8 0.8 89 chr2R 8297429 intergenic not near genes chr2R 8297474 intergenic not near genes chr2R 8297518 intergenic not near genes chr2R_4_8295001 chr2R_8295001 RAL-732 482 chr2R 8330862 8330894 chr2R 8331348 8331380 roo 7 486 2.5 2.0 2.2 2.2 518 chr2R 8330862 intron pdm3 + chr2R 8331121 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-732 483 chr2R 8339199 8339224 chr2R 8339297 8339322 4 97 2.5 6.0 4.2 0.8 123 chr2R 8339199 intron pdm3 + chr2R 8339260 intron pdm3 + chr2R 8339322 intron pdm3 + chr2R_4_8335001 chr2R_8335001 RAL-732 484 chr2R 8387428 8387463 chr2R 8387506 8387541 10 78 1.5 1.0 1.2 4.5 113 chr2R 8387428 intron pdm3 + chr2R 8387484 intron pdm3 + chr2R 8387541 intron pdm3 + chr2R_10_8385001 chr2R_8385001 RAL-732 485 chr2R 8398221 8398241 chr2R 8403002 8403022 Doc 8 4780 1.0 1.0 1.0 4.0 4801 chr2R 8398221 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-732 486 chr2R 8406075 8406108 chr2R 8406152 8406185 4 77 3.0 1.5 2.2 1.2 110 chr2R 8406075 intron CG2121 - chr2R 8406130 intron CG2121 - chr2R 8406185 intron CG2121 - chr2R_4_8405001 chr2R_8405001 RAL-732 487 chr2R 8454940 8454958 chr2R 8455883 8455901 5 944 30.5 16.5 23.5 0.2 961 chr2R 8454940 exon Mal-A2 + chr2R 8455420 exon Mal-A2 + chr2R 8455901 intergenic Mal-A3 -,Mal-A2 + chr2R_5_8455001 chr2R_8455001 RAL-732 488 chr2R 8480942 8480963 chr2R 8481066 8481087 5 124 1.5 1.5 1.5 2.0 145 chr2R 8480942 intron mtt - chr2R 8481014 intron mtt - chr2R 8481087 intron mtt - chr2R_5_8480001 chr2R_8480001 RAL-732 489 chr2R 8483967 8483983 chr2R 8484043 8484059 4 76 1.0 3.0 2.0 1.3 92 chr2R 8483967 intron mtt - chr2R 8484013 intron mtt - chr2R 8484059 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-732 490 chr2R 8508760 8508779 chr2R 8508843 8508862 4 83 1.5 2.5 2.0 1.3 102 chr2R 8508760 intron mtt - chr2R 8508811 intron mtt - chr2R 8508862 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-732 491 chr2R 8615773 8615807 chr2R 8615885 8615919 10 113 3.0 3.5 3.2 2.4 146 chr2R 8615773 intron Cirl + chr2R 8615846 intron Cirl + chr2R 8615919 5` UTR Cirl + chr2R_10_8615001 chr2R_8615001 RAL-732 492 chr2R 8721212 8721239 chr2R 8721292 8721321 9 82 3.0 1.5 2.2 2.8 109 chr2R 8721212 intron,exon CG14767 -,CG30357 - chr2R 8721266 intron,exon CG14767 -,CG30357 - chr2R 8721321 intron,exon CG14767 -,CG30357 - chr2R_9_8720001 chr2R_8720001 RAL-732 493 chr2R 8722780 8722791 chr2R 8723020 8723031 pogo 4 240 0.5 2.5 1.5 1.6 251 chr2R 8722780 intron CG14767 - chr2R 8722906 intron CG14767 - chr2R 8723031 intron CG14767 - chr2R_4_8720001 chr2R_8720001 RAL-732 494 chr2R 8777939 8777943 chr2R 8784143 8784147 diver 4 6204 0.0 5.0 2.5 1.1 6208 chr2R 8777939 intergenic not near genes chr2R 8781043 intergenic not near genes chr2R 8784147 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-732 495 chr2R 8801319 8801356 chr2R 8801409 8801446 13 90 4.0 2.0 3.0 3.2 127 chr2R 8801319 intron sns + chr2R 8801382 intron sns + chr2R 8801446 intron sns + chr2R_13_8800001 chr2R_8800001 RAL-732 496 chr2R 8827757 8827791 chr2R 8827833 8827867 13 76 5.0 4.5 4.8 2.2 110 chr2R 8827757 intron sns + chr2R 8827812 intron sns + chr2R 8827867 intron sns + chr2R_13_8825001 chr2R_8825001 RAL-732 497 chr2R 8914440 8914472 chr2R 8914517 8914550 7 78 1.5 2.0 1.8 2.5 110 chr2R 8914440 intergenic lin +,Pgi - chr2R 8914495 intergenic lin +,Pgi - chr2R 8914550 5` UTR lin + chr2R_7_8910001 chr2R_8910001 RAL-732 498 chr2R 9032527 9032543 chr2R 9032620 9032636 6 92 5.0 0.0 2.5 1.7 109 chr2R 9032527 intergenic not near genes chr2R 9032582 intergenic not near genes chr2R 9032636 intergenic not near genes chr2R_6_9030001 chr2R_9030001 RAL-732 499 chr2R 9055791 9055822 chr2R 9055871 9055902 10 80 3.0 2.5 2.8 2.6 111 chr2R 9055791 intron CG13743 - chr2R 9055846 intron CG13743 - chr2R 9055902 intron CG13743 - chr2R_10_9055001 chr2R_9055001 RAL-732 500 chr2R 9065916 9065944 chr2R 9065998 9066026 10 82 3.5 3.0 3.2 2.4 110 chr2R 9065916 intron ana + chr2R 9065971 intron ana + chr2R 9066026 intron ana + chr2R_10_9065001 chr2R_9065001 RAL-732 501 chr2R 9079403 9079433 chr2R 9079509 9079539 10 106 2.5 2.0 2.2 3.1 136 chr2R 9079403 intron CG8083 + chr2R 9079471 intron CG8083 + chr2R 9079539 intron CG8083 + chr2R_10_9075001 chr2R_9075001 RAL-732 502 chr2R 9093111 9093140 chr2R 9093190 9093219 7 78 3.0 2.0 2.5 2.0 108 chr2R 9093111 3` UTR CG13741 - chr2R 9093165 3` UTR CG13741 - chr2R 9093219 exon CG13741 - chr2R_7_9090001 chr2R_9090001 RAL-732 503 chr2R 9151301 9151333 chr2R 9157771 9157803 Burdock 5 6470 3.5 0.5 2.0 1.7 6502 chr2R 9151301 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157803 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-732 504 chr2R 9368130 9368149 chr2R 9368206 9368225 8 76 1.5 0.0 0.8 4.4 95 chr2R 9368130 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368225 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-732 505 chr2R 9378110 9378143 chr2R 9378192 9378225 19 82 6.0 2.0 4.0 3.8 115 chr2R 9378110 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378225 intron CG13954 - chr2R_19_9375001 chr2R_9375001 RAL-732 506 chr2R 9408236 9408249 chr2R 9408319 9408332 5 83 2.5 2.5 2.5 1.4 96 chr2R 9408236 intron wun - chr2R 9408284 intron wun - chr2R 9408332 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-732 507 chr2R 9480075 9480096 chr2R 9490606 9490627 roo 5 10531 0.5 1.0 0.8 2.8 10552 chr2R 9480075 intergenic not near genes chr2R 9485351 intergenic not near genes chr2R 9490627 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-732 508 chr2R 9509443 9509455 chr2R 9509527 9509539 7 83 2.5 5.5 4.0 1.4 96 chr2R 9509443 intron brp + chr2R 9509491 intron brp + chr2R 9509539 intron brp + chr2R_7_9505001 chr2R_9505001 RAL-732 509 chr2R 9616638 9616646 chr2R 9616743 9616751 4 105 3.5 1.0 2.2 1.2 113 chr2R 9616638 intron Mmp2 - chr2R 9616694 intron Mmp2 - chr2R 9616751 intron Mmp2 - chr2R_4_9615001 chr2R_9615001 RAL-732 510 chr2R 9650940 9650964 chr2R 9651030 9651056 9 92 2.0 3.0 2.5 2.6 116 chr2R 9650940 intron Mmp2 - chr2R 9650998 intron Mmp2 - chr2R 9651056 intron Mmp2 - chr2R_9_9650001 chr2R_9650001 RAL-732 511 chr2R 9782444 9782473 chr2R 9782533 9782562 8 89 1.5 1.5 1.5 3.2 118 chr2R 9782444 intron CG1688 - chr2R 9782503 intron CG1688 - chr2R 9782562 intron CG1688 - chr2R_8_9780001 chr2R_9780001 RAL-732 512 chr2R 10017649 10017673 chr2R 10017728 10017752 4 79 3.5 3.5 3.5 0.9 103 chr2R 10017649 intron Pka-R2 - chr2R 10017700 intron Pka-R2 - chr2R 10017752 intron Pka-R2 - chr2R_4_10015001 chr2R_10015001 RAL-732 513 chr2R 10147643 10147673 chr2R 10147726 10147756 5 83 1.5 0.5 1.0 2.5 113 chr2R 10147643 intron KCNQ - chr2R 10147700 intron KCNQ - chr2R 10147756 intron KCNQ - chr2R_5_10145001 chr2R_10145001 RAL-732 514 chr2R 10176877 10176897 chr2R 10186044 10186064 roo 5 9167 2.0 0.5 1.2 2.3 9187 chr2R 10176877 intron KCNQ - chr2R 10181470 intron KCNQ - chr2R 10186064 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-732 515 chr2R 10270566 10270600 chr2R 10270655 10270689 10 89 0.0 1.0 0.5 6.7 123 chr2R 10270566 intron CAP + chr2R 10270628 intron CAP + chr2R 10270689 intron CAP + chr2R_10_10270001 chr2R_10270001 RAL-732 516 chr2R 10290114 10290138 chr2R 10290195 10290219 5 81 3.0 1.0 2.0 1.7 105 chr2R 10290114 intron CAP + chr2R 10290166 intron CAP + chr2R 10290219 intron CAP + chr2R_5_10290001 chr2R_10290001 RAL-732 517 chr2R 10469021 10469054 chr2R 10469147 10469180 7 126 2.5 4.0 3.2 1.7 159 chr2R 10469021 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-732 518 chr2R 10546558 10546594 chr2R 10546649 10546685 6 91 0.0 1.0 0.5 4.0 127 chr2R 10546558 intergenic not near genes chr2R 10546622 intergenic not near genes chr2R 10546685 intergenic not near genes chr2R_6_10545001 chr2R_10545001 RAL-732 519 chr2R 10572011 10572043 chr2R 10572202 10572234 10 192 0.5 1.0 0.8 5.6 223 chr2R 10572011 intron psq + chr2R 10572122 intron psq + chr2R 10572234 intron psq + chr2R_10_10570001 chr2R_10570001 RAL-732 520 chr2R 10577973 10577993 chr2R 10578119 10578147 4 150 2.5 0.0 1.2 1.8 174 chr2R 10577973 intron psq + chr2R 10578060 intron psq + chr2R 10578147 intron psq + chr2R_4_10575001 chr2R_10575001 RAL-732 521 chr2R 10585573 10585590 chr2R 10594154 10594173 Tirant 5 8583 1.5 2.5 2.0 1.7 8600 chr2R 10585573 intron psq + chr2R 10589873 intron psq + chr2R 10594173 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-732 522 chr2R 10758794 10758825 chr2R 10758892 10758924 12 99 2.5 3.0 2.8 3.2 130 chr2R 10758794 intron CG33144 - chr2R 10758859 intron CG33144 - chr2R 10758924 intron CG33144 - chr2R_12_10755001 chr2R_10755001 RAL-732 523 chr2R 10761555 10761584 chr2R 10761709 10761738 13 154 2.0 2.0 2.0 4.3 183 chr2R 10761555 intron,5` UTR CG33144 -,CR43605 + chr2R 10761646 intron,5` UTR CG33144 -,CR43605 + chr2R 10761738 intron CG33144 - chr2R_13_10760001 chr2R_10760001 RAL-732 524 chr2R 10768147 10768185 chr2R 10768228 10768266 7 81 2.0 2.0 2.0 2.3 119 chr2R 10768147 intron CG33144 - chr2R 10768206 intron CG33144 - chr2R 10768266 intron CG33144 - chr2R_7_10765001 chr2R_10765001 RAL-732 525 chr2R 10790140 10790174 chr2R 10790228 10790262 9 88 2.5 2.0 2.2 2.8 122 chr2R 10790140 intron CG33144 - chr2R 10790201 intron CG33144 - chr2R 10790262 intron CG33144 - chr2R_9_10790001 chr2R_10790001 RAL-732 526 chr2R 10794913 10794938 chr2R 10794991 10795016 5 78 0.5 3.0 1.8 1.8 103 chr2R 10794913 intron CG33144 - chr2R 10794964 intron CG33144 - chr2R 10795016 intron CG33144 - chr2R_5_10790001 chr2R_10790001 RAL-732 527 chr2R 10830663 10830695 chr2R 10830740 10830771 10 76 1.0 0.5 0.8 5.6 108 chr2R 10830663 intron CG12344 - chr2R 10830717 intron CG12344 - chr2R 10830771 intron CG12344 - chr2R_10_10830001 chr2R_10830001 RAL-732 528 chr2R 10867704 10867719 chr2R 10867784 10867798 9 80 1.0 1.0 1.0 4.5 94 chr2R 10867704 intron CG30015 - chr2R 10867751 intron CG30015 - chr2R 10867798 intron CG30015 - chr2R_9_10865001 chr2R_10865001 RAL-732 529 chr2R 10922779 10922788 chr2R 10922865 10922874 4 86 0.0 2.0 1.0 2.0 95 chr2R 10922779 intergenic not near genes chr2R 10922826 intergenic not near genes chr2R 10922874 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-732 530 chr2R 10948025 10948047 chr2R 10955576 10955596 17.6 5 7550 0.0 0.5 0.2 4.2 7571 chr2R 10948025 intergenic not near genes chr2R 10951810 intergenic not near genes chr2R 10955596 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-732 531 chr2R 10959091 10959102 chr2R 10959169 10959180 5 78 0.0 3.0 1.5 2.0 89 chr2R 10959091 intergenic not near genes chr2R 10959136 intergenic not near genes chr2R 10959180 intergenic not near genes chr2R_5_10955001 chr2R_10955001 RAL-732 532 chr2R 10979656 10979687 chr2R 10980126 10980157 297 7 470 1.5 2.0 1.8 2.5 501 chr2R 10979656 intergenic not near genes chr2R 10979906 intergenic not near genes chr2R 10980157 intergenic not near genes chr2R_7_10975001 chr2R_10975001 RAL-732 533 chr2R 10989477 10989486 chr2R 10989556 10989564 6 79 0.0 11.5 5.8 0.9 87 chr2R 10989477 intron luna - chr2R 10989520 intron luna - chr2R 10989564 intron luna - chr2R_6_10985001 chr2R_10985001 RAL-732 534 chr2R 11009812 11009848 chr2R 11018986 11019022 roo 4 9174 1.0 1.5 1.2 1.8 9210 chr2R 11009812 intron luna - chr2R 11014417 intron luna - chr2R 11019022 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-732 535 chr2R 11019881 11019904 chr2R 11024947 11024970 jockey 4 5066 3.0 1.5 2.2 1.2 5089 chr2R 11019881 intron luna - chr2R 11022426 intron luna - chr2R 11024970 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-732 536 chr2R 11032647 11032659 chr2R 11032741 11032752 6 94 2.0 1.0 1.5 2.4 105 chr2R 11032647 intron luna - chr2R 11032700 intron luna - chr2R 11032752 intron luna - chr2R_6_11030001 chr2R_11030001 RAL-732 537 chr2R 11044598 11044625 chr2R 11044674 11044700 12 76 1.0 1.5 1.2 5.5 102 chr2R 11044598 intron luna - chr2R 11044649 intron luna - chr2R 11044700 intron luna - chr2R_12_11040001 chr2R_11040001 RAL-732 538 chr2R 11071002 11071005 chr2R 11071077 11071084 4 78 6.0 2.5 4.2 0.8 82 chr2R 11071002 intron luna - chr2R 11071043 intron luna - chr2R 11071084 intron luna - chr2R_4_11070001 chr2R_11070001 RAL-732 539 chr2R 11144286 11144306 chr2R 11144387 11144407 8 101 1.0 0.0 0.5 5.3 121 chr2R 11144286 intron CG13229 - chr2R 11144346 intron CG13229 - chr2R 11144407 intron CG13229 - chr2R_8_11140001 chr2R_11140001 RAL-732 540 chr2R 11150188 11150196 chr2R 11150263 11150272 5 76 4.5 2.5 3.5 1.1 84 chr2R 11150188 intron CG13229 - chr2R 11150230 intron CG13229 - chr2R 11150272 intron CG13229 - chr2R_5_11150001 chr2R_11150001 RAL-732 541 chr2R 11207822 11207837 chr2R 11208015 11208028 BS 6 193 3.5 1.5 2.5 1.7 206 chr2R 11207822 intron shn + chr2R 11207925 intron shn + chr2R 11208028 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-732 542 chr2R 11284288 11284320 chr2R 11284381 11284413 9 93 1.5 3.0 2.2 2.8 125 chr2R 11284288 5` UTR CG13220 + chr2R 11284350 5` UTR CG13220 + chr2R 11284413 5` UTR CG13220 + chr2R_9_11280001 chr2R_11280001 RAL-732 543 chr2R 11366164 11366176 chr2R 11366243 11366255 5 79 7.0 1.5 4.2 1.0 91 chr2R 11366164 intergenic not near genes chr2R 11366210 intergenic CG13204 + chr2R 11366255 intergenic CG13204 + chr2R_5_11365001 chr2R_11365001 RAL-732 544 chr2R 11415523 11415550 chr2R 11418672 11418699 opus 6 3149 3.5 4.5 4.0 1.2 3176 chr2R 11415523 intron Drip - chr2R 11417111 intron Drip - chr2R 11418699 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-732 545 chr2R 11472647 11472679 chr2R 11473844 11473876 pogo 13 1197 6.0 2.0 4.0 2.6 1229 chr2R 11472647 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_13_11470001 chr2R_11470001 RAL-732 546 chr2R 11928691 11928707 chr2R 11928769 11928785 6 78 1.0 2.5 1.8 2.1 94 chr2R 11928691 intergenic not near genes chr2R 11928738 intergenic not near genes chr2R 11928785 intergenic CR44312 - chr2R_6_11925001 chr2R_11925001 RAL-732 547 chr2R 11951345 11951372 chr2R 11951422 11951449 6 77 1.0 1.0 1.0 3.0 104 chr2R 11951345 intron CG13188 + chr2R 11951397 intron CG13188 + chr2R 11951449 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-732 548 chr2R 12096842 12096854 chr2R 12097294 12097306 4 452 1.5 3.0 2.2 1.2 464 chr2R 12096842 intron jeb - chr2R 12097074 intron jeb - chr2R 12097306 intron jeb - chr2R_4_12095001 chr2R_12095001 RAL-732 549 chr2R 12139302 12139316 chr2R 12139394 12139408 5 92 7.0 10.0 8.5 0.5 106 chr2R 12139302 3` UTR,3` UTR CG18343 +,skpB - chr2R 12139355 3` UTR skpB - chr2R 12139408 3` UTR skpB - chr2R_5_12135001 chr2R_12135001 RAL-732 550 chr2R 12186002 12186036 chr2R 12186097 12186131 7 95 0.5 2.5 1.5 2.8 129 chr2R 12186002 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_7_12185001 chr2R_12185001 RAL-732 551 chr2R 12187471 12187508 chr2R 12190087 12190124 51 2617 126.0 75.5 100.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_51_12185001 chr2R_12185001 RAL-732 552 chr2R 12217579 12217592 chr2R 12217660 12217673 4 81 1.0 3.0 2.0 1.3 94 chr2R 12217579 intergenic not near genes chr2R 12217626 intergenic not near genes chr2R 12217673 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-732 553 chr2R 12481143 12481169 chr2R 12482947 12482972 roo 10 1803 2.5 5.0 3.8 2.1 1829 chr2R 12481143 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482972 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-732 554 chr2R 12565565 12565574 chr2R 12565943 12565952 5 378 0.5 1.0 0.8 2.8 387 chr2R 12565565 intergenic not near genes chr2R 12565758 intergenic Cyp301a1 + chr2R 12565952 intergenic Cyp301a1 + chr2R_5_12565001 chr2R_12565001 RAL-732 555 chr2R 12643787 12643818 chr2R 12643863 12643895 4 76 0.0 1.5 0.8 2.2 108 chr2R 12643787 intron CG8785 - chr2R 12643841 intron CG8785 - chr2R 12643895 exon CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-732 556 chr2R 12674848 12674889 chr2R 12674948 12674989 6 100 2.5 6.5 4.5 1.1 141 chr2R 12674848 intron CG42708 - chr2R 12674918 intron CG42708 - chr2R 12674989 intron CG42708 - chr2R_6_12670001 chr2R_12670001 RAL-732 557 chr2R 12707527 12707538 chr2R 12715893 12715904 roo 4 8366 0.0 1.5 0.8 2.2 8377 chr2R 12707527 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715904 intron CG42663 + chr2R_4_12710001 chr2R_12710001 RAL-732 558 chr2R 12774247 12774258 chr2R 12774332 12774343 6 85 3.5 0.0 1.8 2.1 96 chr2R 12774247 intergenic not near genes chr2R 12774295 intergenic not near genes chr2R 12774343 intergenic not near genes chr2R_6_12770001 chr2R_12770001 RAL-732 559 chr2R 12789299 12789326 chr2R 12797662 12797689 roo 7 8363 2.0 2.5 2.2 2.2 8390 chr2R 12789299 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797689 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-732 560 chr2R 12830886 12830913 chr2R 12830962 12830986 5 75 0.5 5.0 2.8 1.3 100 chr2R 12830886 intergenic not near genes chr2R 12830936 intergenic not near genes chr2R 12830986 intergenic not near genes chr2R_5_12830001 chr2R_12830001 RAL-732 561 chr2R 12897462 12897486 chr2R 12897553 12897577 6 91 2.0 0.0 1.0 3.0 115 chr2R 12897462 intron vg + chr2R 12897520 intron vg + chr2R 12897577 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-732 562 chr2R 13129195 13129227 chr2R 13129273 13129305 7 78 0.5 1.0 0.8 3.9 110 chr2R 13129195 intergenic CG3955 -,CG13326 - chr2R 13129250 intergenic CG3955 -,CG13326 - chr2R 13129305 intergenic CG13326 -,CG3955 - chr2R_7_13125001 chr2R_13125001 RAL-732 563 chr2R 13136845 13136868 chr2R 13141643 13141665 Doc 11 4798 5.5 5.0 5.2 1.8 4820 chr2R 13136845 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_11_13135001 chr2R_13135001 RAL-732 564 chr2R 13167435 13167457 chr2R 13167529 13167551 4 94 1.5 0.0 0.8 2.2 116 chr2R 13167435 intron GLaz - chr2R 13167493 intron GLaz - chr2R 13167551 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-732 565 chr2R 13220541 13220548 chr2R 13220639 13220647 5 99 0.0 6.0 3.0 1.2 106 chr2R 13220541 intron CG17059 + chr2R 13220594 intron CG17059 + chr2R 13220647 intron CG17059 + chr2R_5_13220001 chr2R_13220001 RAL-732 566 chr2R 13348991 13349008 chr2R 13349072 13349089 4 81 0.5 0.0 0.2 3.3 98 chr2R 13348991 intron CR44206 - chr2R 13349040 intron CR44206 - chr2R 13349089 intron CR44206 - chr2R_4_13345001 chr2R_13345001 RAL-732 567 chr2R 13372183 13372211 chr2R 13372262 13372289 7 79 4.0 5.5 4.8 1.2 106 chr2R 13372183 intergenic not near genes chr2R 13372236 intergenic not near genes chr2R 13372289 intergenic not near genes chr2R_7_13370001 chr2R_13370001 RAL-732 568 chr2R 13431488 13431516 chr2R 13431567 13431595 8 79 1.5 1.0 1.2 3.6 107 chr2R 13431488 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431595 intron CG42321 - chr2R_8_13430001 chr2R_13430001 RAL-732 569 chr2R 13438860 13438893 chr2R 13440178 13440212 9 1318 5.5 30.5 18.0 0.5 1352 chr2R 13438860 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440212 exon cnn - chr2R_9_13435001 chr2R_13435001 RAL-732 570 chr2R 13498737 13498765 chr2R 13498823 13498850 11 85 3.0 2.5 2.8 2.9 113 chr2R 13498737 intron drk - chr2R 13498794 intron drk - chr2R 13498850 intron drk - chr2R_11_13495001 chr2R_13495001 RAL-732 571 chr2R 13532518 13532546 chr2R 13532634 13532662 5 116 0.5 0.0 0.2 4.2 144 chr2R 13532518 intron Vmat - chr2R 13532590 intron Vmat - chr2R 13532662 intron Vmat - chr2R_5_13530001 chr2R_13530001 RAL-732 572 chr2R 13533470 13533491 chr2R 13533654 13533675 4 184 1.5 0.5 1.0 2.0 205 chr2R 13533470 intron Vmat - chr2R 13533572 intron Vmat - chr2R 13533675 intron Vmat - chr2R_4_13530001 chr2R_13530001 RAL-732 573 chr2R 13547083 13547109 chr2R 13547278 13547304 5 195 2.0 2.0 2.0 1.7 221 chr2R 13547083 intron CG6145 - chr2R 13547194 intron CG6145 - chr2R 13547304 intron CG6145 - chr2R_5_13545001 chr2R_13545001 RAL-732 574 chr2R 13554766 13554772 chr2R 13554851 13554857 6 85 0.0 3.5 1.8 2.1 91 chr2R 13554766 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554857 intron Roe1 + chr2R_6_13550001 chr2R_13550001 RAL-732 575 chr2R 13580497 13580532 chr2R 13580847 13580881 jockey 10 350 0.5 2.0 1.2 4.5 384 chr2R 13580497 3` UTR CG6191 - chr2R 13580689 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_10_13580001 chr2R_13580001 RAL-732 576 chr2R 13632304 13632312 chr2R 13632392 13632400 5 88 8.0 2.0 5.0 0.8 96 chr2R 13632304 intron fas + chr2R 13632352 intron fas + chr2R 13632400 intron fas + chr2R_5_13630001 chr2R_13630001 RAL-732 577 chr2R 13680379 13680389 chr2R 13680537 13680546 5 157 1.0 1.5 1.2 2.3 167 chr2R 13680379 intron fas + chr2R 13680462 intron fas + chr2R 13680546 intron fas + chr2R_5_13680001 chr2R_13680001 RAL-732 578 chr2R 13692319 13692343 chr2R 13692403 13692427 6 84 2.5 0.5 1.5 2.4 108 chr2R 13692319 intron,intron fas +,CG6220 - chr2R 13692373 intron,intron fas +,CG6220 - chr2R 13692427 intron,intron fas +,CG6220 - chr2R_6_13690001 chr2R_13690001 RAL-732 579 chr2R 13768985 13769010 chr2R 13769084 13769106 6 98 1.0 3.5 2.2 1.9 121 chr2R 13768985 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769106 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-732 580 chr2R 13888761 13888783 chr2R 13888837 13888859 5 77 2.5 0.0 1.2 2.3 98 chr2R 13888761 intron shot - chr2R 13888810 intron shot - chr2R 13888859 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-732 581 chr2R 13905627 13905633 chr2R 13907608 13907615 Rt1a 4 1982 0.0 4.0 2.0 1.3 1988 chr2R 13905627 intron shot - chr2R 13906621 intron shot - chr2R 13907615 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-732 582 chr2R 13925847 13925873 chr2R 13926023 13926049 13 176 2.0 3.0 2.5 3.7 202 chr2R 13925847 intron shot - chr2R 13925948 intron shot - chr2R 13926049 intron shot - chr2R_13_13925001 chr2R_13925001 RAL-732 583 chr2R 14000234 14000261 chr2R 14000462 14000489 6 228 2.5 0.0 1.2 2.7 255 chr2R 14000234 intron mam + chr2R 14000362 intron mam + chr2R 14000489 intron mam + chr2R_6_14000001 chr2R_14000001 RAL-732 584 chr2R 14175985 14175998 chr2R 14176294 14176308 6 310 1.0 1.5 1.2 2.7 323 chr2R 14175985 intron cg + chr2R 14176146 intron cg + chr2R 14176308 intron cg + chr2R_6_14175001 chr2R_14175001 RAL-732 585 chr2R 14294838 14294859 chr2R 14294918 14294939 8 80 2.5 4.5 3.5 1.8 101 chr2R 14294838 intron Ih + chr2R 14294888 intron Ih + chr2R 14294939 intron Ih + chr2R_8_14290001 chr2R_14290001 RAL-732 586 chr2R 14324626 14324647 chr2R 14324842 14324861 5 216 0.0 3.0 1.5 2.0 235 chr2R 14324626 intron Shroom + chr2R 14324744 intron Shroom + chr2R 14324861 intron Shroom + chr2R_5_14320001 chr2R_14320001 RAL-732 587 chr2R 14394231 14394247 chr2R 14399020 14399036 Doc 5 4789 4.5 1.0 2.8 1.3 4805 chr2R 14394231 intergenic not near genes chr2R 14396634 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-732 588 chr2R 14400526 14400553 chr2R 14400605 14400631 8 79 1.5 1.5 1.5 3.2 105 chr2R 14400526 intergenic not near genes chr2R 14400578 intergenic not near genes chr2R 14400631 intergenic not near genes chr2R_8_14400001 chr2R_14400001 RAL-732 589 chr2R 14449848 14449880 chr2R 14449931 14449959 7 81 4.5 1.5 3.0 1.8 111 chr2R 14449848 intron Oaz + chr2R 14449904 intron Oaz + chr2R 14449959 intron Oaz + chr2R_7_14445001 chr2R_14445001 RAL-732 590 chr2R 14467302 14467323 chr2R 14476454 14476475 roo 13 9152 2.5 7.5 5.0 2.2 9173 chr2R 14467302 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476475 5` UTR CR44462 + chr2R_13_14470001 chr2R_14470001 RAL-732 591 chr2R 14497387 14497422 chr2R 14498553 14498588 1360 7 1166 0.5 2.5 1.5 2.8 1201 chr2R 14497387 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498588 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-732 592 chr2R 14536241 14536251 chr2R 14536371 14536381 6 130 2.0 3.0 2.5 1.7 140 chr2R 14536241 intron ttv + chr2R 14536311 intron ttv + chr2R 14536381 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-732 593 chr2R 14643918 14643947 chr2R 14644043 14644072 7 125 1.5 4.5 3.0 1.8 154 chr2R 14643918 intergenic not near genes chr2R 14643995 intergenic not near genes chr2R 14644072 intergenic not near genes chr2R_7_14640001 chr2R_14640001 RAL-732 594 chr2R 14653907 14653928 chr2R 14654007 14654028 10 100 2.0 5.5 3.8 2.1 121 chr2R 14653907 intergenic not near genes chr2R 14653968 intergenic not near genes chr2R 14654028 intergenic not near genes chr2R_10_14650001 chr2R_14650001 RAL-732 595 chr2R 14728220 14728245 chr2R 14728303 14728328 7 83 0.0 2.0 1.0 3.5 108 chr2R 14728220 intergenic not near genes chr2R 14728274 intergenic not near genes chr2R 14728328 intergenic not near genes chr2R_7_14725001 chr2R_14725001 RAL-732 596 chr2R 14780435 14780453 chr2R 14780571 14780589 10 136 3.0 3.0 3.0 2.5 154 chr2R 14780435 intron kn - chr2R 14780512 intron kn - chr2R 14780589 intron kn - chr2R_10_14780001 chr2R_14780001 RAL-732 597 chr2R 14889207 14889239 chr2R 14897815 14897844 Max-element 5 8607 3.0 0.0 1.5 2.0 8637 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-732 598 chr2R 14911708 14911728 chr2R 14911831 14911851 6 123 1.0 2.0 1.5 2.4 143 chr2R 14911708 intron CG10249 - chr2R 14911780 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-732 599 chr2R 15004731 15004752 chr2R 15005060 15005080 jockey 9 329 5.5 2.0 3.8 1.9 349 chr2R 15004731 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005080 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-732 600 chr2R 15015457 15015487 chr2R 15022881 15022911 mdg1 13 7424 3.0 3.0 3.0 3.2 7454 chr2R 15015457 intron hbs + chr2R 15019184 intron hbs + chr2R 15022911 intron hbs + chr2R_13_15015001 chr2R_15015001 RAL-732 601 chr2R 15072912 15072939 chr2R 15072989 15073016 4 77 2.5 1.5 2.0 1.3 104 chr2R 15072912 intergenic not near genes chr2R 15072964 intergenic not near genes chr2R 15073016 intergenic not near genes chr2R_4_15070001 chr2R_15070001 RAL-732 602 chr2R 15084982 15085006 chr2R 15092030 15092055 297 7 7049 2.5 2.5 2.5 2.0 7073 chr2R 15084982 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-732 603 chr2R 15094882 15094915 chr2R 15094959 15094992 12 77 2.0 2.0 2.0 4.0 110 chr2R 15094882 intergenic not near genes chr2R 15094937 intergenic not near genes chr2R 15094992 intergenic not near genes chr2R_12_15090001 chr2R_15090001 RAL-732 604 chr2R 15119317 15119350 chr2R 15127798 15127831 Tirant 8 8480 2.0 3.0 2.5 2.3 8514 chr2R 15119317 intron chn + chr2R 15123574 intron chn + chr2R 15127831 intron chn + chr2R_8_15120001 chr2R_15120001 RAL-732 605 chr2R 15197184 15197219 chr2R 15197264 15197299 5 80 2.0 4.5 3.2 1.2 115 chr2R 15197184 intergenic not near genes chr2R 15197242 intergenic not near genes chr2R 15197299 intergenic not near genes chr2R_5_15195001 chr2R_15195001 RAL-732 606 chr2R 15295712 15295733 chr2R 15295837 15295858 7 125 3.5 2.0 2.8 1.8 146 chr2R 15295712 intron Trpm - chr2R 15295785 intron Trpm - chr2R 15295858 intron Trpm - chr2R_7_15295001 chr2R_15295001 RAL-732 607 chr2R 15296162 15296173 chr2R 15296244 15296256 7 82 3.0 2.0 2.5 2.0 94 chr2R 15296162 intron Trpm - chr2R 15296209 intron Trpm - chr2R 15296256 intron Trpm - chr2R_7_15295001 chr2R_15295001 RAL-732 608 chr2R 15685508 15685538 chr2R 15685716 15685746 8 208 1.0 4.0 2.5 2.3 238 chr2R 15685508 intron,intron Ranbp11 +,CG30082 - chr2R 15685627 intron,exon Ranbp11 +,CG30082 - chr2R 15685746 intron,intron Ranbp11 +,CG30082 - chr2R_8_15685001 chr2R_15685001 RAL-732 609 chr2R 15697892 15697925 chr2R 15697973 15698006 7 81 1.0 0.0 0.5 4.7 114 chr2R 15697892 exon CG33462 + chr2R 15697949 3` UTR CG33462 + chr2R 15698006 3` UTR CG33462 + chr2R_7_15695001 chr2R_15695001 RAL-732 610 chr2R 15783606 15783626 chr2R 15783741 15783761 5 135 3.5 3.5 3.5 1.1 155 chr2R 15783606 intron Zasp52 - chr2R 15783684 intron Zasp52 - chr2R 15783761 intron Zasp52 - chr2R_5_15780001 chr2R_15780001 RAL-732 611 chr2R 15869273 15869286 chr2R 15869357 15869370 6 84 2.0 0.0 1.0 3.0 97 chr2R 15869273 intergenic Rif1 -,sli - chr2R 15869322 intergenic sli -,Rif1 - chr2R 15869370 intergenic sli -,Rif1 - chr2R_6_15865001 chr2R_15865001 RAL-732 612 chr2R 16245630 16245662 chr2R 16245718 16245750 8 88 3.0 4.5 3.8 1.7 120 chr2R 16245630 intron CngA - chr2R 16245690 intron CngA - chr2R 16245750 intron CngA - chr2R_8_16245001 chr2R_16245001 RAL-732 613 chr2R 16279397 16279403 chr2R 16279482 16279488 4 85 0.0 2.5 1.2 1.8 91 chr2R 16279397 intergenic not near genes chr2R 16279442 intergenic not near genes chr2R 16279488 intergenic not near genes chr2R_4_16275001 chr2R_16275001 RAL-732 614 chr2R 16387509 16387543 chr2R 16387989 16388024 9 481 2.0 1.0 1.5 3.6 515 chr2R 16387509 intron Sema-2b + chr2R 16387766 intron Sema-2b + chr2R 16388024 intron Sema-2b + chr2R_9_16385001 chr2R_16385001 RAL-732 615 chr2R 16449323 16449333 chr2R 16449569 16449580 5 247 2.0 0.5 1.2 2.3 257 chr2R 16449323 intergenic not near genes chr2R 16449452 intergenic not near genes chr2R 16449580 intergenic not near genes chr2R_5_16445001 chr2R_16445001 RAL-732 616 chr2R 16503871 16503902 chr2R 16503961 16503992 14 90 2.0 2.0 2.0 4.7 121 chr2R 16503871 intron Sema-2a + chr2R 16503932 intron Sema-2a + chr2R 16503992 intron Sema-2a + chr2R_14_16500001 chr2R_16500001 RAL-732 617 chr2R 16518044 16518066 chr2R 16518120 16518142 6 76 1.5 1.5 1.5 2.4 98 chr2R 16518044 intron Sema-2a + chr2R 16518093 intron Sema-2a + chr2R 16518142 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-732 618 chr2R 16571883 16571897 chr2R 16571975 16571992 5 94 1.5 2.5 2.0 1.7 109 chr2R 16571883 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571992 intergenic CG4927 + chr2R_5_16570001 chr2R_16570001 RAL-732 619 chr2R 16617064 16617085 chr2R 16617143 16617164 7 79 1.0 5.0 3.0 1.8 100 chr2R 16617064 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617164 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-732 620 chr2R 16737138 16737166 chr2R 16737238 16737264 7 99 3.0 2.5 2.8 1.8 126 chr2R 16737138 3` UTR CG43104 - chr2R 16737201 3` UTR CG43104 - chr2R 16737264 exon CG43104 - chr2R_7_16735001 chr2R_16735001 RAL-732 621 chr2R 16740891 16740921 chr2R 16740985 16741013 17 93 2.5 9.0 5.8 2.5 122 chr2R 16740891 intergenic not near genes chr2R 16740952 intergenic not near genes chr2R 16741013 intergenic not near genes chr2R_17_16740001 chr2R_16740001 RAL-732 622 chr2R 16775649 16775675 chr2R 16775913 16775939 9 264 1.5 3.5 2.5 2.6 290 chr2R 16775649 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775939 intergenic Arp53D + chr2R_9_16775001 chr2R_16775001 RAL-732 623 chr2R 16852849 16852874 chr2R 16855706 16855733 6 2858 20.5 10.5 15.5 0.4 2884 chr2R 16852849 exon IntS8 + chr2R 16854291 exon Fen1 - chr2R 16855733 intergenic Fen1 -,Dek + chr2R_6_16850001 chr2R_16850001 RAL-732 624 chr2R 17073059 17073090 chr2R 17073138 17073169 5 79 1.0 1.5 1.2 2.3 110 chr2R 17073059 intron CG30460 - chr2R 17073114 intron CG30460 - chr2R 17073169 intron CG30460 - chr2R_5_17070001 chr2R_17070001 RAL-732 625 chr2R 17147242 17147270 chr2R 17152273 17152301 jockey 12 5031 0.5 6.0 3.2 2.9 5059 chr2R 17147242 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_12_17145001 chr2R_17145001 RAL-732 626 chr2R 17161173 17161197 chr2R 17161258 17161282 7 85 1.5 2.0 1.8 2.5 109 chr2R 17161173 intergenic CG30457 - chr2R 17161228 intergenic CG30457 - chr2R 17161282 intergenic CG30457 - chr2R_7_17160001 chr2R_17160001 RAL-732 627 chr2R 17166620 17166624 chr2R 17166697 17166701 4 77 5.5 2.0 3.8 0.8 81 chr2R 17166620 5` UTR CG10953 - chr2R 17166660 intergenic CG10953 - chr2R 17166701 intergenic CG10953 - chr2R_4_17165001 chr2R_17165001 RAL-732 628 chr2R 17170403 17170433 chr2R 17170495 17170526 12 92 0.5 3.5 2.0 4.0 123 chr2R 17170403 intergenic not near genes chr2R 17170464 intergenic not near genes chr2R 17170526 intergenic not near genes chr2R_12_17170001 chr2R_17170001 RAL-732 629 chr2R 17176352 17176389 chr2R 17182542 17182579 diver 10 6190 1.5 2.0 1.8 3.6 6227 chr2R 17176352 intergenic not near genes chr2R 17179466 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_10_17175001 chr2R_17175001 RAL-732 630 chr2R 17236507 17236532 chr2R 17241710 17241736 copia 5 5204 2.0 3.5 2.8 1.3 5229 chr2R 17236507 intron mbl + chr2R 17239122 intron mbl + chr2R 17241736 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-732 631 chr2R 17255872 17255895 chr2R 17256043 17256066 4 171 0.0 3.0 1.5 1.6 194 chr2R 17255872 intron mbl + chr2R 17255969 intron mbl + chr2R 17256066 intron mbl + chr2R_4_17255001 chr2R_17255001 RAL-732 632 chr2R 17277238 17277243 chr2R 17277646 17277651 jockey 4 408 2.5 4.5 3.5 0.9 413 chr2R 17277238 intron mbl + chr2R 17277444 intron mbl + chr2R 17277651 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-732 633 chr2R 17451012 17451039 chr2R 17451092 17451119 7 80 3.0 2.0 2.5 2.0 107 chr2R 17451012 exon mthl3 - chr2R 17451066 intron mthl3 - chr2R 17451119 intron mthl3 - chr2R_7_17450001 chr2R_17450001 RAL-732 634 chr2R 17459005 17459029 chr2R 17459090 17459114 10 85 3.5 2.0 2.8 2.6 109 chr2R 17459005 intron CG14478 + chr2R 17459060 intron CG14478 + chr2R 17459114 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-732 635 chr2R 17640114 17640135 chr2R 17640346 17640368 4 232 2.0 2.0 2.0 1.3 254 chr2R 17640114 intergenic not near genes chr2R 17640241 intergenic not near genes chr2R 17640368 intergenic not near genes chr2R_4_17640001 chr2R_17640001 RAL-732 636 chr2R 17709980 17710013 chr2R 17710071 17710103 4 91 0.0 1.5 0.8 2.2 123 chr2R 17709980 intron CG6424 - chr2R 17710042 intron CG6424 - chr2R 17710103 intron CG6424 - chr2R_4_17710001 chr2R_17710001 RAL-732 637 chr2R 17784024 17784055 chr2R 17784265 17784296 pogo 9 241 4.5 5.5 5.0 1.5 272 chr2R 17784024 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-732 638 chr2R 17801277 17801310 chr2R 17801360 17801394 10 84 4.0 1.0 2.5 2.9 117 chr2R 17801277 3` UTR,intron CR45270 -,grh + chr2R 17801336 3` UTR,intron CR45270 -,grh + chr2R 17801394 3` UTR,intron CR45270 -,grh + chr2R_10_17800001 chr2R_17800001 RAL-732 639 chr2R 17843237 17843240 chr2R 17843325 17843328 4 88 0.0 1.5 0.8 2.2 91 chr2R 17843237 intergenic olf186-F + chr2R 17843282 intergenic olf186-F + chr2R 17843328 intergenic olf186-F + chr2R_4_17840001 chr2R_17840001 RAL-732 640 chr2R 17896118 17896136 chr2R 17896421 17896439 5 303 1.5 2.5 2.0 1.7 321 chr2R 17896118 intron Elk + chr2R 17896278 intron Elk + chr2R 17896439 intron Elk + chr2R_5_17895001 chr2R_17895001 RAL-732 641 chr2R 17928300 17928331 chr2R 17928791 17928822 6 491 2.0 2.5 2.2 1.9 522 chr2R 17928300 intergenic not near genes chr2R 17928561 intergenic not near genes chr2R 17928822 intergenic not near genes chr2R_6_17925001 chr2R_17925001 RAL-732 642 chr2R 18032093 18032114 chr2R 18032222 18032243 7 129 1.5 5.0 3.2 1.7 150 chr2R 18032093 intergenic not near genes chr2R 18032168 intergenic not near genes chr2R 18032243 intergenic not near genes chr2R_7_18030001 chr2R_18030001 RAL-732 643 chr2R 18045667 18045702 chr2R 18046019 18046054 jockey 7 352 2.0 2.5 2.2 2.2 387 chr2R 18045667 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046054 intergenic CG5767 - chr2R_7_18045001 chr2R_18045001 RAL-732 644 chr2R 18289441 18289462 chr2R 18289542 18289564 8 102 0.5 5.5 3.0 2.0 123 chr2R 18289441 intron,intron sbb -,CG14502 + chr2R 18289502 intron,intron sbb -,CG14502 + chr2R 18289564 exon,intron sbb -,CG14502 + chr2R_8_18285001 chr2R_18285001 RAL-732 645 chr2R 18358403 18358420 chr2R 18372615 18372632 roo 7 14212 0.5 3.0 1.8 2.5 14229 chr2R 18358403 intergenic not near genes chr2R 18365518 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-732 646 chr2R 18408281 18408313 chr2R 18408402 18408433 17 121 3.0 5.0 4.0 3.4 152 chr2R 18408281 exon GstE8 + chr2R 18408357 exon GstE8 + chr2R 18408433 exon GstE8 + chr2R_17_18405001 chr2R_18405001 RAL-732 647 chr2R 18477741 18477763 chr2R 18477820 18477846 8 82 0.0 3.0 1.5 3.2 105 chr2R 18477741 intron CG30116 - chr2R 18477794 intron CG30116 - chr2R 18477846 intron CG30116 - chr2R_8_18475001 chr2R_18475001 RAL-732 648 chr2R 18528197 18528218 chr2R 18528282 18528303 7 85 3.0 2.5 2.8 1.8 106 chr2R 18528197 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528303 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-732 649 chr2R 18573154 18573180 chr2R 18573232 18573258 10 78 3.5 1.0 2.2 3.1 104 chr2R 18573154 intron GEFmeso - chr2R 18573206 intron GEFmeso - chr2R 18573258 intron GEFmeso - chr2R_10_18570001 chr2R_18570001 RAL-732 650 chr2R 18575803 18575827 chr2R 18581991 18582015 3S18 4 6188 1.5 4.0 2.8 1.1 6212 chr2R 18575803 intron GEFmeso - chr2R 18578909 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-732 651 chr2R 18590869 18590897 chr2R 18600021 18600049 roo 8 9152 3.0 3.5 3.2 1.9 9180 chr2R 18590869 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600049 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-732 652 chr2R 18645629 18645650 chr2R 18645720 18645741 8 91 2.5 5.0 3.8 1.7 112 chr2R 18645629 intron SP2637 - chr2R 18645685 intron SP2637 - chr2R 18645741 intron SP2637 - chr2R_8_18645001 chr2R_18645001 RAL-732 653 chr2R 18768933 18768960 chr2R 18769055 18769082 16 122 6.0 10.5 8.2 1.7 149 chr2R 18768933 intron Mctp + chr2R 18769008 intron Mctp + chr2R 18769082 intron Mctp + chr2R_16_18765001 chr2R_18765001 RAL-732 654 chr2R 18808070 18808085 chr2R 18808159 18808174 5 88 0.0 0.0 0.0 5.0 104 chr2R 18808070 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808174 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-732 655 chr2R 18827718 18827723 chr2R 18827798 18827803 4 80 0.0 2.0 1.0 2.0 85 chr2R 18827718 intron CG15097 - chr2R 18827760 intron CG15097 - chr2R 18827803 intron CG15097 - chr2R_4_18825001 chr2R_18825001 RAL-732 656 chr2R 18943617 18943636 chr2R 18943733 18943752 7 116 2.0 3.0 2.5 2.0 135 chr2R 18943617 intron sano + chr2R 18943684 intron sano + chr2R 18943752 intron sano + chr2R_7_18940001 chr2R_18940001 RAL-732 657 chr2R 18953172 18953189 chr2R 18953259 18953275 4 86 2.5 2.5 2.5 1.1 103 chr2R 18953172 intron sano + chr2R 18953224 intron sano + chr2R 18953275 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-732 658 chr2R 18992027 18992050 chr2R 18992168 18992191 6 141 2.5 3.0 2.8 1.6 164 chr2R 18992027 intron tn + chr2R 18992109 intron tn + chr2R 18992191 intron tn + chr2R_6_18990001 chr2R_18990001 RAL-732 659 chr2R 19067728 19067751 chr2R 19067804 19067827 5 76 1.5 0.5 1.0 2.5 99 chr2R 19067728 intron 5-HT1A + chr2R 19067778 intron 5-HT1A + chr2R 19067827 intron 5-HT1A + chr2R_5_19065001 chr2R_19065001 RAL-732 660 chr2R 19104886 19104900 chr2R 19104991 19105005 4 105 2.0 1.0 1.5 1.6 119 chr2R 19104886 intron 5-HT1A + chr2R 19104946 intron 5-HT1A + chr2R 19105005 intron 5-HT1A + chr2R_4_19100001 chr2R_19100001 RAL-732 661 chr2R 19300970 19300988 chr2R 19301052 19301071 7 83 2.5 5.5 4.0 1.4 101 chr2R 19300970 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301071 intron Tab2 + chr2R_7_19300001 chr2R_19300001 RAL-732 662 chr2R 19537142 19537168 chr2R 19537231 19537257 5 89 2.0 2.0 2.0 1.7 115 chr2R 19537142 intron sm - chr2R 19537200 intron sm - chr2R 19537257 intron sm - chr2R_5_19535001 chr2R_19535001 RAL-732 663 chr2R 19572190 19572211 chr2R 19572273 19572293 5 83 1.0 7.5 4.2 1.0 103 chr2R 19572190 intron sm - chr2R 19572242 intron sm - chr2R 19572293 intron sm - chr2R_5_19570001 chr2R_19570001 RAL-732 664 chr2R 19601265 19601298 chr2R 19601355 19601388 4 90 1.0 0.5 0.8 2.2 123 chr2R 19601265 intron sm - chr2R 19601326 intron sm - chr2R 19601388 intron sm - chr2R_4_19600001 chr2R_19600001 RAL-732 665 chr2R 19651121 19651140 chr2R 19651334 19651352 12 214 2.0 3.5 2.8 3.2 231 chr2R 19651121 intergenic not near genes chr2R 19651236 intergenic not near genes chr2R 19651352 intergenic not near genes chr2R_12_19650001 chr2R_19650001 RAL-732 666 chr2R 19714705 19714721 chr2R 19714781 19714797 5 76 0.0 1.0 0.5 3.3 92 chr2R 19714705 3` UTR CG8517 + chr2R 19714751 3` UTR CG8517 + chr2R 19714797 3` UTR CG8517 + chr2R_5_19710001 chr2R_19710001 RAL-732 667 chr2R 19715835 19715853 chr2R 19723324 19723341 blood 7 7488 1.5 2.5 2.0 2.3 7506 chr2R 19715835 intergenic not near genes chr2R 19719588 intergenic not near genes chr2R 19723341 intergenic not near genes chr2R_7_19715001 chr2R_19715001 RAL-732 668 chr2R 19776602 19776630 chr2R 19779921 19779953 jockey 5 3322 3.0 4.5 3.8 1.0 3351 chr2R 19776602 intergenic not near genes chr2R 19778278 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-732 669 chr2R 19914844 19914866 chr2R 19922256 19922278 mdg1 6 7412 4.5 1.5 3.0 1.5 7434 chr2R 19914844 intergenic not near genes chr2R 19918561 intergenic not near genes chr2R 19922278 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-732 670 chr2R 19926022 19926029 chr2R 19926105 19926112 4 83 2.0 6.5 4.2 0.8 90 chr2R 19926022 intergenic CR44626 - chr2R 19926067 intergenic CR44626 - chr2R 19926112 intergenic CR44626 - chr2R_4_19925001 chr2R_19925001 RAL-732 671 chr2R 19957430 19957451 chr2R 19962632 19962653 copia 4 5202 2.0 0.5 1.2 1.8 5223 chr2R 19957430 intergenic CG44623 + chr2R 19960042 intergenic not near genes chr2R 19962653 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-732 672 chr2R 20031907 20031936 chr2R 20032003 20032032 13 96 3.5 4.5 4.0 2.6 125 chr2R 20031907 intergenic not near genes chr2R 20031970 intergenic not near genes chr2R 20032032 intergenic not near genes chr2R_13_20030001 chr2R_20030001 RAL-732 673 chr2R 20057962 20057968 chr2R 20058040 20058046 4 78 1.0 0.0 0.5 2.7 84 chr2R 20057962 intergenic CR44631 + chr2R 20058004 intergenic CR44631 + chr2R 20058046 intergenic CR44631 + chr2R_4_20055001 chr2R_20055001 RAL-732 674 chr2R 20118879 20118905 chr2R 20118967 20118991 8 88 1.5 0.5 1.0 4.0 112 chr2R 20118879 intergenic not near genes chr2R 20118935 intergenic not near genes chr2R 20118991 intergenic not near genes chr2R_8_20115001 chr2R_20115001 RAL-732 675 chr2R 20338767 20338787 chr2R 20338847 20338867 4 80 1.0 2.5 1.8 1.4 100 chr2R 20338767 intergenic not near genes chr2R 20338817 intergenic not near genes chr2R 20338867 intergenic not near genes chr2R_4_20335001 chr2R_20335001 RAL-732 676 chr2R 20384027 20384056 chr2R 20384135 20384164 11 108 2.5 2.5 2.5 3.1 137 chr2R 20384027 intergenic not near genes chr2R 20384096 intergenic not near genes chr2R 20384164 intergenic not near genes chr2R_11_20380001 chr2R_20380001 RAL-732 677 chr2R 20523037 20523071 chr2R 20523148 20523181 14 110 1.0 3.5 2.2 4.4 144 chr2R 20523037 intergenic not near genes chr2R 20523109 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_14_20520001 chr2R_20520001 RAL-732 678 chr2R 20601719 20601748 chr2R 20601804 20601833 12 85 0.5 1.5 1.0 6.0 114 chr2R 20601719 intron bl + chr2R 20601776 intron bl + chr2R 20601833 intron bl + chr2R_12_20600001 chr2R_20600001 RAL-732 679 chr2R 20667761 20667786 chr2R 20667872 20667897 9 111 0.5 5.5 3.0 2.2 136 chr2R 20667761 3` UTR exu - chr2R 20667829 3` UTR exu - chr2R 20667897 3` UTR exu - chr2R_9_20665001 chr2R_20665001 RAL-732 680 chr2R 20715324 20715355 chr2R 20715413 20715444 13 89 7.5 2.0 4.8 2.2 120 chr2R 20715324 intron dpr + chr2R 20715384 intron dpr + chr2R 20715444 intron dpr + chr2R_13_20715001 chr2R_20715001 RAL-732 681 chr2R 20739446 20739476 chr2R 20744214 20744244 F-element 11 4768 3.5 5.5 4.5 2.0 4798 chr2R 20739446 intron dpr + chr2R 20741845 intron dpr + chr2R 20744244 intron dpr + chr2R_11_20740001 chr2R_20740001 RAL-732 682 chr2R 20830534 20830570 chr2R 20830614 20830647 17 80 2.0 2.0 2.0 5.7 113 chr2R 20830534 intron,intron insc -,sktl - chr2R 20830590 intron,intron insc -,sktl - chr2R 20830647 intron,intron insc -,sktl - chr2R_17_20830001 chr2R_20830001 RAL-732 683 chr2R 20842902 20842917 chr2R 20842985 20843000 4 83 4.0 2.5 3.2 1.0 98 chr2R 20842902 intergenic not near genes chr2R 20842951 intergenic not near genes chr2R 20843000 intergenic not near genes chr2R_4_20840001 chr2R_20840001 RAL-732 684 chr2R 20858303 20858325 chr2R 20858499 20858521 9 196 1.0 1.0 1.0 4.5 218 chr2R 20858303 intergenic not near genes chr2R 20858412 intergenic not near genes chr2R 20858521 intergenic not near genes chr2R_9_20855001 chr2R_20855001 RAL-732 685 chr2R 20861548 20861560 chr2R 20861833 20861845 5 284 0.0 5.5 2.8 1.3 297 chr2R 20861548 intergenic not near genes chr2R 20861696 intergenic not near genes chr2R 20861845 intergenic not near genes chr2R_5_20860001 chr2R_20860001 RAL-732 686 chr2R 21151118 21151146 chr2R 21153751 21153779 opus 6 2633 1.0 4.0 2.5 1.7 2661 chr2R 21151118 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_6_21150001 chr2R_21150001 RAL-732 687 chr2R 21366535 21366545 chr2R 21366640 21366650 4 105 1.5 6.0 3.8 0.8 115 chr2R 21366535 intron cv-2 - chr2R 21366592 intron cv-2 - chr2R 21366650 intron cv-2 - chr2R_4_21365001 chr2R_21365001 RAL-732 688 chr2R 21435346 21435367 chr2R 21435438 21435459 8 92 1.5 1.5 1.5 3.2 113 chr2R 21435346 intron Sdc - chr2R 21435402 intron Sdc - chr2R 21435459 intron Sdc - chr2R_8_21435001 chr2R_21435001 RAL-732 689 chr2R 21469949 21469974 chr2R 21470036 21470061 8 87 0.0 2.5 1.2 3.6 112 chr2R 21469949 intron Sdc - chr2R 21470005 intron Sdc - chr2R 21470061 intron Sdc - chr2R_8_21470001 chr2R_21470001 RAL-732 690 chr2R 21546785 21546813 chr2R 21546866 21546894 9 80 1.5 2.0 1.8 3.2 109 chr2R 21546785 intron Egfr + chr2R 21546840 intron Egfr + chr2R 21546894 intron Egfr + chr2R_9_21545001 chr2R_21545001 RAL-732 691 chr2R 21592848 21592856 chr2R 21592931 21592937 4 82 5.0 10.5 7.8 0.5 89 chr2R 21592848 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592937 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-732 692 chr2R 21753090 21753108 chr2R 21753573 21753593 roo 6 485 2.0 3.5 2.8 1.6 503 chr2R 21753090 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753593 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-732 693 chr2R 21795938 21795945 chr2R 21796026 21796033 5 88 2.0 2.0 2.0 1.7 95 chr2R 21795938 intergenic CG34204 + chr2R 21795986 intergenic CG34204 + chr2R 21796033 intergenic CG34204 + chr2R_5_21795001 chr2R_21795001 RAL-732 694 chr2R 21804905 21804922 chr2R 21805006 21805023 4 100 1.5 3.0 2.2 1.2 118 chr2R 21804905 intergenic not near genes chr2R 21804964 intergenic not near genes chr2R 21805023 intergenic not near genes chr2R_4_21800001 chr2R_21800001 RAL-732 695 chr2R 21906270 21906282 chr2R 21906371 21906383 6 101 5.0 1.5 3.2 1.4 113 chr2R 21906270 intron Fili + chr2R 21906326 intron Fili + chr2R 21906383 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-732 696 chr2R 21922592 21922624 chr2R 21922669 21922700 6 77 1.0 1.0 1.0 3.0 108 chr2R 21922592 intron Fili + chr2R 21922646 intron Fili + chr2R 21922700 intron Fili + chr2R_6_21920001 chr2R_21920001 RAL-732 697 chr2R 22004298 22004317 chr2R 22004392 22004411 4 94 2.0 0.0 1.0 2.0 113 chr2R 22004298 intron CG34370 - chr2R 22004354 intron CG34370 - chr2R 22004411 intron CG34370 - chr2R_4_22000001 chr2R_22000001 RAL-732 698 chr2R 22009786 22009808 chr2R 22009862 22009884 5 76 0.5 3.5 2.0 1.7 98 chr2R 22009786 intron CG34370 - chr2R 22009835 intron CG34370 - chr2R 22009884 intron CG34370 - chr2R_5_22005001 chr2R_22005001 RAL-732 699 chr2R 22012987 22013006 chr2R 22013080 22013097 7 93 2.5 0.0 1.2 3.2 110 chr2R 22012987 intron CG34370 - chr2R 22013042 intron CG34370 - chr2R 22013097 intron CG34370 - chr2R_7_22010001 chr2R_22010001 RAL-732 700 chr2R 22040155 22040186 chr2R 22040235 22040264 6 80 1.5 2.0 1.8 2.1 109 chr2R 22040155 intergenic not near genes chr2R 22040210 intergenic not near genes chr2R 22040264 intergenic not near genes chr2R_6_22040001 chr2R_22040001 RAL-732 701 chr2R 22072683 22072709 chr2R 22072767 22072794 4 85 0.5 5.5 3.0 1.0 111 chr2R 22072683 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072794 intron CG11474 - chr2R_4_22070001 chr2R_22070001 RAL-732 702 chr2R 22090047 22090055 chr2R 22090129 22090137 5 82 3.0 0.5 1.8 1.8 90 chr2R 22090047 3` UTR CG43393 - chr2R 22090092 3` UTR CG43393 - chr2R 22090137 3` UTR CG43393 - chr2R_5_22090001 chr2R_22090001 RAL-732 703 chr2R 22248848 22248874 chr2R 22248925 22248951 5 76 0.5 6.0 3.2 1.2 103 chr2R 22248848 intron dve + chr2R 22248900 intron dve + chr2R 22248951 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-732 704 chr2R 22292073 22292104 chr2R 22292158 22292191 12 87 0.5 4.0 2.2 3.8 118 chr2R 22292073 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292191 5` UTR CR43422 + chr2R_12_22290001 chr2R_22290001 RAL-732 705 chr2R 22312778 22312802 chr2R 22312900 22312927 4 124 1.0 1.5 1.2 1.8 149 chr2R 22312778 intergenic CR44758 + chr2R 22312852 intergenic CR44758 + chr2R 22312927 5` UTR CR44758 + chr2R_4_22310001 chr2R_22310001 RAL-732 706 chr2R 22349693 22349719 chr2R 22351477 22351503 jockey 6 1784 4.0 2.5 3.2 1.4 1810 chr2R 22349693 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-732 707 chr2R 22360383 22360397 chr2R 22360816 22360829 jockey 7 433 4.0 2.5 3.2 1.7 446 chr2R 22360383 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-732 708 chr2R 22362969 22362994 chr2R 22363115 22363140 6 146 1.5 1.5 1.5 2.4 171 chr2R 22362969 intron Liprin-gamma - chr2R 22363054 intron Liprin-gamma - chr2R 22363140 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-732 709 chr2R 22525751 22525785 chr2R 22529306 22529340 jockey 8 3555 1.0 4.0 2.5 2.3 3589 chr2R 22525751 intron px - chr2R 22527546 intron px - chr2R 22529340 intron px - chr2R_8_22525001 chr2R_22525001 RAL-732 710 chr2R 22623453 22623482 chr2R 22623593 22623622 13 139 2.5 2.0 2.2 4.1 169 chr2R 22623453 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623622 intron CG33143 + chr2R_13_22620001 chr2R_22620001 RAL-732 711 chr2R 22662266 22662274 chr2R 22662366 22662375 7 101 4.0 4.0 4.0 1.4 109 chr2R 22662266 intron CG42566 + chr2R 22662320 intron CG42566 + chr2R 22662375 intron CG42566 + chr2R_7_22660001 chr2R_22660001 RAL-732 712 chr2R 22774961 22775000 chr2R 22775380 22775419 jockey 12 419 2.5 1.5 2.0 4.0 458 chr2R 22774961 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-732 713 chr2R 22839233 22839264 chr2R 22839322 22839351 4 88 2.5 1.5 2.0 1.3 118 chr2R 22839233 exon CG9825 + chr2R 22839292 intergenic CG9825 + chr2R 22839351 intergenic CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-732 714 chr2R 22846931 22846944 chr2R 22847007 22847019 5 75 0.0 0.0 0.0 5.0 88 chr2R 22846931 exon CG3649 + chr2R 22846975 exon CG3649 + chr2R 22847019 exon CG3649 + chr2R_5_22845001 chr2R_22845001 RAL-732 715 chr2R 22871023 22871032 chr2R 22871118 22871126 7 94 2.5 3.0 2.8 1.8 103 chr2R 22871023 intergenic CG13532 +,fd59A + chr2R 22871074 intergenic CG13532 +,fd59A + chr2R 22871126 intergenic CG13532 +,fd59A + chr2R_7_22870001 chr2R_22870001 RAL-732 716 chr2R 22971496 22971532 chr2R 22971575 22971611 12 79 1.0 1.0 1.0 6.0 115 chr2R 22971496 intergenic not near genes chr2R 22971554 intergenic not near genes chr2R 22971611 intergenic not near genes chr2R_12_22970001 chr2R_22970001 RAL-732 717 chr2R 23052657 23052688 chr2R 23052732 23052764 7 76 1.0 3.0 2.0 2.3 107 chr2R 23052657 intergenic not near genes chr2R 23052710 intergenic not near genes chr2R 23052764 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-732 718 chr2R 23070409 23070444 chr2R 23070505 23070540 7 96 2.5 4.5 3.5 1.6 131 chr2R 23070409 intron l(2)k09913 + chr2R 23070474 intron l(2)k09913 + chr2R 23070540 intron l(2)k09913 + chr2R_7_23070001 chr2R_23070001 RAL-732 719 chr2R 23156959 23156992 chr2R 23157039 23157073 8 80 4.5 1.5 3.0 2.0 114 chr2R 23156959 intron CG9899 + chr2R 23157016 intron CG9899 + chr2R 23157073 intron CG9899 + chr2R_8_23155001 chr2R_23155001 RAL-732 720 chr2R 23157396 23157437 chr2R 23157492 23157533 8 96 1.0 4.0 2.5 2.3 137 chr2R 23157396 intron CG9899 + chr2R 23157464 intron CG9899 + chr2R 23157533 intron CG9899 + chr2R_8_23155001 chr2R_23155001 RAL-732 721 chr2R 23188554 23188586 chr2R 23188632 23188664 9 78 1.0 1.0 1.0 4.5 110 chr2R 23188554 intron CG34371 - chr2R 23188609 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_9_23185001 chr2R_23185001 RAL-732 722 chr2R 23257505 23257624 chr2R 23257588 23257764 11 131 0.0 0.0 0.0 11.0 259 chr2R 23257505 intergenic not near genes chr2R 23257634 intergenic not near genes chr2R 23257764 intergenic not near genes chr2R_11_23255001 chr2R_23255001 RAL-732 723 chr2R 23275661 23275672 chr2R 23275753 23275764 5 92 2.0 2.5 2.2 1.6 103 chr2R 23275661 intergenic ord - chr2R 23275712 intergenic ord - chr2R 23275764 intergenic ord - chr2R_5_23275001 chr2R_23275001 RAL-732 724 chr2R 23356273 23356304 chr2R 23356362 23356393 16 89 1.5 0.5 1.0 8.0 120 chr2R 23356273 3` UTR Rpi + chr2R 23356333 3` UTR Rpi + chr2R 23356393 3` UTR,3` UTR Rpi +,CG3500 - chr2R_16_23355001 chr2R_23355001 RAL-732 725 chr2R 23402614 23402640 chr2R 23407690 23407716 flea 8 5076 0.5 1.0 0.8 4.4 5102 chr2R 23402614 intergenic CG3520 - chr2R 23405165 intergenic not near genes chr2R 23407716 intergenic not near genes chr2R_8_23405001 chr2R_23405001 RAL-732 726 chr2R 23433026 23433055 chr2R 23433104 23433133 7 78 2.5 6.0 4.2 1.3 107 chr2R 23433026 intron CG9815 - chr2R 23433080 intron CG9815 - chr2R 23433133 intron CG9815 - chr2R_7_23430001 chr2R_23430001 RAL-732 727 chr2R 23447342 23447364 chr2R 23447480 23447506 5 141 2.0 1.0 1.5 2.0 164 chr2R 23447342 intron CG43795 + chr2R 23447424 intron CG43795 + chr2R 23447506 intron CG43795 + chr2R_5_23445001 chr2R_23445001 RAL-732 728 chr2R 23529575 23529607 chr2R 23537151 23537183 412 10 7576 1.5 3.5 2.5 2.9 7608 chr2R 23529575 intron bw - chr2R 23533379 intron bw - chr2R 23537183 exon bw - chr2R_10_23530001 chr2R_23530001 RAL-732 729 chr2R 23594842 23594862 chr2R 23595059 23595079 7 217 2.5 3.0 2.8 1.8 237 chr2R 23594842 intron apt + chr2R 23594960 intron apt + chr2R 23595079 intron apt + chr2R_7_23590001 chr2R_23590001 RAL-732 730 chr2R 23607047 23607189 chr2R 23607128 23607281 10 87 2.0 3.5 2.8 2.6 234 chr2R 23607047 intron CG17664 - chr2R 23607164 intron CG17664 - chr2R 23607281 intron CG17664 - chr2R_10_23605001 chr2R_23605001 RAL-732 731 chr2R 23632133 23632163 chr2R 23632218 23632248 10 85 1.5 2.0 1.8 3.6 115 chr2R 23632133 intergenic retn + chr2R 23632190 intergenic retn + chr2R 23632248 intergenic retn + chr2R_10_23630001 chr2R_23630001 RAL-732 732 chr2R 23653970 23653997 chr2R 23654047 23654074 5 77 7.0 1.0 4.0 1.0 104 chr2R 23653970 3` UTR retn + chr2R 23654022 3` UTR retn + chr2R 23654074 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-732 733 chr2R 23705625 23705654 chr2R 23710903 23710932 9 5278 38.0 34.0 36.0 0.2 5307 chr2R 23705625 exon l(2)not - chr2R 23708278 intron,exon l(2)not -,l(2)tid + chr2R 23710932 intergenic not near genes chr2R_9_23705001 chr2R_23705001 RAL-732 734 chr2R 23718286 23718317 chr2R 23718427 23718458 8 142 29.5 34.0 31.8 0.2 172 chr2R 23718286 intron Sesn + chr2R 23718372 intron Sesn + chr2R 23718458 intron Sesn + chr2R_8_23715001 chr2R_23715001 RAL-732 735 chr2R 23914310 23914331 chr2R 23921934 23921953 412 4 7623 2.0 6.0 4.0 0.8 7643 chr2R 23914310 exon kcc + chr2R 23918132 intron kcc + chr2R 23921953 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-732 736 chr2R 23926837 23926865 chr2R 23926918 23926945 6 82 1.0 1.5 1.2 2.7 108 chr2R 23926837 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926891 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926945 3` UTR Ca-P60A - chr2R_6_23925001 chr2R_23925001 RAL-732 737 chr2R 23986514 23986544 chr2R 23986594 23986624 9 80 2.0 1.5 1.8 3.2 110 chr2R 23986514 intron Phm - chr2R 23986569 intron Phm - chr2R 23986624 intron,5` UTR Phm -,CG30178 + chr2R_9_23985001 chr2R_23985001 RAL-732 738 chr2R 24031380 24031408 chr2R 24031464 24031492 14 84 2.0 3.0 2.5 4.0 112 chr2R 24031380 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031492 intergenic Chi -,CG30172 - chr2R_14_24030001 chr2R_24030001 RAL-732 739 chr2R 24138316 24138337 chr2R 24138475 24138496 5 159 4.0 4.5 4.2 1.0 180 chr2R 24138316 intergenic CG4065 -,CR44826 + chr2R 24138406 intergenic CR44826 +,CG4065 - chr2R 24138496 intergenic CR44826 +,CG4065 - chr2R_5_24135001 chr2R_24135001 RAL-732 740 chr2R 24147068 24147090 chr2R 24154646 24154668 412 6 7578 5.0 5.0 5.0 1.0 7600 chr2R 24147068 intron Dat + chr2R 24150868 intron Dat + chr2R 24154668 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-732 741 chr2R 24177234 24177268 chr2R 24184719 24184753 412 9 7485 4.0 2.0 3.0 2.2 7519 chr2R 24177234 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_9_24180001 chr2R_24180001 RAL-732 742 chr2R 24210401 24210419 chr2R 24210572 24210589 4 171 0.0 2.0 1.0 2.0 188 chr2R 24210401 intergenic not near genes chr2R 24210495 intergenic not near genes chr2R 24210589 intergenic not near genes chr2R_4_24210001 chr2R_24210001 RAL-732 743 chr2R 24243742 24243770 chr2R 24243843 24243872 8 101 3.0 2.5 2.8 2.1 130 chr2R 24243742 intron nord + chr2R 24243807 intron nord + chr2R 24243872 intron nord + chr2R_8_24240001 chr2R_24240001 RAL-732 744 chr2R 24287131 24287166 chr2R 24287208 24287243 9 77 2.5 2.0 2.2 2.8 112 chr2R 24287131 intron nvy + chr2R 24287187 intron nvy + chr2R 24287243 intron nvy + chr2R_9_24285001 chr2R_24285001 RAL-732 745 chr2R 24303891 24303919 chr2R 24303975 24304002 9 84 2.0 0.0 1.0 4.5 111 chr2R 24303891 intergenic not near genes chr2R 24303946 intergenic not near genes chr2R 24304002 intergenic not near genes chr2R_9_24300001 chr2R_24300001 RAL-732 746 chr2R 24351429 24351439 chr2R 24351510 24351520 6 81 1.0 2.5 1.8 2.1 91 chr2R 24351429 intron bs + chr2R 24351474 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_6_24350001 chr2R_24350001 RAL-732 747 chr2R 24353426 24353462 chr2R 24361788 24361824 roo 10 8362 0.5 3.0 1.8 3.6 8398 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357625 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_10_24355001 chr2R_24355001 RAL-732 748 chr2R 24383831 24383856 chr2R 24383912 24383937 9 81 1.0 5.5 3.2 2.1 106 chr2R 24383831 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383937 exon mAChR-A - chr2R_9_24380001 chr2R_24380001 RAL-732 749 chr2R 24386442 24386452 chr2R 24386646 24386655 5 204 5.0 5.5 5.2 0.8 213 chr2R 24386442 intron mAChR-A - chr2R 24386548 intron mAChR-A - chr2R 24386655 intron mAChR-A - chr2R_5_24385001 chr2R_24385001 RAL-732 750 chr2R 24430920 24430950 chr2R 24431008 24431038 11 88 0.0 3.5 1.8 3.9 118 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430979 intergenic CG15873 -,Pgam5-2 - chr2R 24431038 intergenic Pgam5-2 -,CG15873 - chr2R_11_24430001 chr2R_24430001 RAL-732 751 chr2R 24647587 24647617 chr2R 24655144 24655174 412 7 7557 1.0 4.5 2.8 1.8 7587 chr2R 24647587 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-732 752 chr2R 24722365 24722396 chr2R 24722447 24722478 9 82 1.0 3.0 2.0 3.0 113 chr2R 24722365 intron Mid1 - chr2R 24722422 intron Mid1 - chr2R 24722478 intron Mid1 - chr2R_9_24720001 chr2R_24720001 RAL-732 753 chr2R 24727884 24727915 chr2R 24735392 24735423 mdg1 9 7508 4.0 5.0 4.5 1.6 7539 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-732 754 chr2R 24737146 24737175 chr2R 24737266 24737295 10 120 1.0 4.0 2.5 2.9 149 chr2R 24737146 intergenic Mid1 - chr2R 24737220 intergenic not near genes chr2R 24737295 intergenic not near genes chr2R_10_24735001 chr2R_24735001 RAL-732 755 chr2R 24739645 24739674 chr2R 24739721 24739750 4 76 1.5 1.5 1.5 1.6 105 chr2R 24739645 intergenic CR44828 - chr2R 24739698 intergenic CR44828 - chr2R 24739750 intergenic CR44828 - chr2R_4_24735001 chr2R_24735001 RAL-732 756 chr2R 24745541 24745572 chr2R 24745620 24745651 8 79 3.5 2.5 3.0 2.0 110 chr2R 24745541 intron CG30421 + chr2R 24745596 intron CG30421 + chr2R 24745651 intron CG30421 + chr2R_8_24745001 chr2R_24745001 RAL-732 757 chr2R 24763609 24763642 chr2R 24765585 24765618 G2 23 1975 5.0 4.0 4.5 4.2 2009 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_23_24760001 chr2R_24760001 RAL-732 758 chr2R 24880756 24880782 chr2R 24880837 24880863 11 81 1.0 4.5 2.8 2.9 107 chr2R 24880756 3` UTR CG44247 + chr2R 24880810 3` UTR CG44247 + chr2R 24880863 3` UTR CG44247 + chr2R_11_24880001 chr2R_24880001 RAL-732 759 chr2R 24927849 24927873 chr2R 24927932 24927956 6 83 1.0 1.0 1.0 3.0 107 chr2R 24927849 intron pain - chr2R 24927902 intron pain - chr2R 24927956 intron pain - chr2R_6_24925001 chr2R_24925001 RAL-732 760 chr2R 25004902 25004920 chr2R 25004980 25004998 8 78 2.5 2.5 2.5 2.3 96 chr2R 25004902 intron zip - chr2R 25004950 intron zip - chr2R 25004998 intron zip - chr2R_8_25000001 chr2R_25000001 RAL-732 761 chr2R 25014542 25014574 chr2R 25014618 25014650 8 76 1.0 1.5 1.2 3.6 108 chr2R 25014542 intron uzip + chr2R 25014596 intron uzip + chr2R 25014650 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-732 762 chr2R 25018340 25018371 chr2R 25018441 25018472 6 101 2.0 4.0 3.0 1.5 132 chr2R 25018340 intron uzip + chr2R 25018406 intron uzip + chr2R 25018472 intron uzip + chr2R_6_25015001 chr2R_25015001 RAL-732 763 chr2R 25022641 25022670 chr2R 25022725 25022754 10 84 1.0 1.0 1.0 5.0 113 chr2R 25022641 intron uzip + chr2R 25022698 intron uzip + chr2R 25022754 intron uzip + chr2R_10_25020001 chr2R_25020001 RAL-732 764 chr2R 25036258 25036278 chr2R 25036345 25036365 5 87 2.0 4.5 3.2 1.2 107 chr2R 25036258 intron Nplp1 + chr2R 25036312 intron Nplp1 + chr2R 25036365 intron Nplp1 + chr2R_5_25035001 chr2R_25035001 RAL-732 765 chr2R 25061342 25061369 chr2R 25061423 25061452 5 83 2.5 2.5 2.5 1.4 110 chr2R 25061342 intergenic not near genes chr2R 25061397 intergenic not near genes chr2R 25061452 intergenic not near genes chr2R_5_25060001 chr2R_25060001 RAL-732 766 chr2R 25081604 25081630 chr2R 25082700 25082725 10 1095 4.0 2.0 3.0 2.5 1121 chr2R 25081604 intron gol - chr2R 25082164 intron gol - chr2R 25082725 intron gol - chr2R_10_25080001 chr2R_25080001 RAL-732 767 chr2R 25101275 25101307 chr2R 25101377 25101409 7 102 2.5 2.0 2.2 2.2 134 chr2R 25101275 intron lov - chr2R 25101342 intron lov - chr2R 25101409 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-732 768 chr2R 25104304 25104328 chr2R 25104397 25104421 5 93 1.5 1.5 1.5 2.0 117 chr2R 25104304 intron lov - chr2R 25104362 intron lov - chr2R 25104421 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-732 769 chr2R 25141651 25141684 chr2R 25159341 25159374 roo 10 17690 4.0 1.0 2.5 2.9 17723 chr2R 25141651 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_10_25150001 chr2R_25150001 RAL-732 770 chr3L 92861 92889 chr3L 93537 93565 5 676 14.0 11.5 12.8 0.4 704 chr3L 92861 intergenic not near genes chr3L 93213 intergenic not near genes chr3L 93565 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-732 771 chr3L 106256 106284 chr3L 106866 106894 7 610 25.0 23.5 24.2 0.3 638 chr3L 106256 intergenic not near genes chr3L 106575 intergenic not near genes chr3L 106894 intergenic not near genes chr3L_7_105001 chr3L_105001 RAL-732 772 chr3L 110219 110243 chr3L 119385 119410 roo 7 9167 1.5 2.5 2.0 2.3 9191 chr3L 110219 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-732 773 chr3L 160227 160264 chr3L 160329 160366 13 102 4.0 2.5 3.2 3.1 139 chr3L 160227 intron p130CAS + chr3L 160296 intron p130CAS + chr3L 160366 intron p130CAS + chr3L_13_160001 chr3L_160001 RAL-732 774 chr3L 170787 170817 chr3L 170999 171029 10 212 1.5 2.0 1.8 3.6 242 chr3L 170787 intron p130CAS + chr3L 170908 intron p130CAS + chr3L 171029 intron p130CAS + chr3L_10_170001 chr3L_170001 RAL-732 775 chr3L 365525 365554 chr3L 365611 365640 8 86 3.5 1.5 2.5 2.3 115 chr3L 365525 3` UTR CG1233 + chr3L 365582 3` UTR CG1233 + chr3L 365640 3` UTR CG1233 + chr3L_8_365001 chr3L_365001 RAL-732 776 chr3L 376046 376058 chr3L 376126 376138 6 80 1.5 3.0 2.2 1.9 92 chr3L 376046 intron trh - chr3L 376092 intron trh - chr3L 376138 intron trh - chr3L_6_375001 chr3L_375001 RAL-732 777 chr3L 402688 402718 chr3L 409741 409770 297 14 7053 4.0 4.5 4.2 2.7 7082 chr3L 402688 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_14_405001 chr3L_405001 RAL-732 778 chr3L 606892 606901 chr3L 606968 606977 4 76 3.5 0.0 1.8 1.4 85 chr3L 606892 intergenic Reg-2 - chr3L 606934 intergenic Reg-2 - chr3L 606977 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-732 779 chr3L 732822 732841 chr3L 733044 733061 6 221 1.0 1.5 1.2 2.7 239 chr3L 732822 intergenic not near genes chr3L 732942 intergenic not near genes chr3L 733061 intergenic not near genes chr3L_6_730001 chr3L_730001 RAL-732 780 chr3L 748215 748241 chr3L 748294 748319 4 79 1.0 1.5 1.2 1.8 104 chr3L 748215 intron hng3 - chr3L 748267 intron hng3 - chr3L 748319 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-732 781 chr3L 858014 858026 chr3L 866494 866507 Tirant 5 8480 3.0 4.5 3.8 1.0 8493 chr3L 858014 intergenic not near genes chr3L 862260 intergenic not near genes chr3L 866507 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-732 782 chr3L 922169 922180 chr3L 922246 922257 5 77 3.0 2.5 2.8 1.3 88 chr3L 922169 intron Glut1 + chr3L 922213 intron Glut1 + chr3L 922257 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-732 783 chr3L 925176 925210 chr3L 932602 932636 mdg1 10 7426 2.5 3.0 2.8 2.6 7460 chr3L 925176 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-732 784 chr3L 933909 933940 chr3L 934012 934043 6 103 1.5 3.5 2.5 1.7 134 chr3L 933909 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934043 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-732 785 chr3L 939771 939802 chr3L 940892 940923 jockey 10 1121 5.0 2.5 3.8 2.1 1152 chr3L 939771 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-732 786 chr3L 945052 945055 chr3L 945133 945135 4 81 0.0 7.0 3.5 0.9 83 chr3L 945052 intron Glut1 + chr3L 945094 intron Glut1 + chr3L 945135 intron Glut1 + chr3L_4_945001 chr3L_945001 RAL-732 787 chr3L 952058 952083 chr3L 952137 952162 7 79 3.0 3.5 3.2 1.7 104 chr3L 952058 intron Glut1 + chr3L 952110 intron Glut1 + chr3L 952162 intron Glut1 + chr3L_7_950001 chr3L_950001 RAL-732 788 chr3L 986325 986363 chr3L 986428 986467 6 104 1.5 1.0 1.2 2.7 142 chr3L 986325 intergenic not near genes chr3L 986396 intergenic not near genes chr3L 986467 intergenic not near genes chr3L_6_985001 chr3L_985001 RAL-732 789 chr3L 1040550 1040581 chr3L 1040634 1040665 11 84 1.5 3.0 2.2 3.4 115 chr3L 1040550 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040665 intron bab1 - chr3L_11_1040001 chr3L_1040001 RAL-732 790 chr3L 1047359 1047384 chr3L 1055171 1055196 412 4 7812 0.5 3.0 1.8 1.4 7837 chr3L 1047359 intron bab1 - chr3L 1051278 intron bab1 - chr3L 1055196 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-732 791 chr3L 1154131 1154158 chr3L 1163280 1163307 roo 5 9150 4.0 2.0 3.0 1.2 9176 chr3L 1154131 intron bab2 - chr3L 1158719 intron bab2 - chr3L 1163307 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-732 792 chr3L 1181024 1181053 chr3L 1181110 1181139 10 85 2.5 2.0 2.2 3.1 115 chr3L 1181024 intergenic not near genes chr3L 1181082 intergenic not near genes chr3L 1181139 intergenic not near genes chr3L_10_1180001 chr3L_1180001 RAL-732 793 chr3L 1219598 1219616 chr3L 1227331 1227349 412 7 7733 3.0 4.5 3.8 1.5 7751 chr3L 1219598 intron mwh + chr3L 1223474 intron mwh + chr3L 1227349 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-732 794 chr3L 1268151 1268177 chr3L 1268338 1268364 7 187 2.5 0.0 1.2 3.2 213 chr3L 1268151 intron CG9134 + chr3L 1268258 intron CG9134 + chr3L 1268364 intron CG9134 + chr3L_7_1265001 chr3L_1265001 RAL-732 795 chr3L 1347157 1347192 chr3L 1347242 1347277 12 84 2.0 5.0 3.5 2.7 120 chr3L 1347157 intron Ptp61F - chr3L 1347217 intron Ptp61F - chr3L 1347277 intron Ptp61F - chr3L_12_1345001 chr3L_1345001 RAL-732 796 chr3L 1361294 1361324 chr3L 1361370 1361399 8 76 0.5 8.0 4.2 1.5 105 chr3L 1361294 intron Ptp61F - chr3L 1361346 intron Ptp61F - chr3L 1361399 intron Ptp61F - chr3L_8_1360001 chr3L_1360001 RAL-732 797 chr3L 1396739 1396757 chr3L 1396823 1396840 6 84 2.0 1.0 1.5 2.4 101 chr3L 1396739 intron Ptp61F - chr3L 1396790 intron Ptp61F - chr3L 1396840 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-732 798 chr3L 1415779 1415808 chr3L 1415861 1415889 14 82 7.5 5.5 6.5 1.9 110 chr3L 1415779 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_14_1415001 chr3L_1415001 RAL-732 799 chr3L 1480995 1481027 chr3L 1481075 1481107 7 80 0.5 5.5 3.0 1.8 112 chr3L 1480995 intron stet - chr3L 1481051 intron stet - chr3L 1481107 intron stet - chr3L_7_1480001 chr3L_1480001 RAL-732 800 chr3L 1571244 1571482 chr3L 1571325 1571567 5 83 1.5 1.0 1.2 2.3 323 chr3L 1571244 intron CG12004 + chr3L 1571406 intron CG12004 + chr3L 1571567 intron CG12004 + chr3L_5_1570001 chr3L_1570001 RAL-732 801 chr3L 1726979 1727001 chr3L 1727114 1727136 7 135 0.0 2.0 1.0 3.5 157 chr3L 1726979 intron drpr - chr3L 1727058 intron drpr - chr3L 1727136 intron drpr - chr3L_7_1725001 chr3L_1725001 RAL-732 802 chr3L 1740852 1740882 chr3L 1741097 1741127 pogo 8 245 4.0 1.0 2.5 2.3 275 chr3L 1740852 intron Gk + chr3L 1740990 intron Gk + chr3L 1741127 intron Gk + chr3L_8_1740001 chr3L_1740001 RAL-732 803 chr3L 1815481 1815507 chr3L 1815594 1815620 7 113 2.5 6.5 4.5 1.3 139 chr3L 1815481 intron GV1 + chr3L 1815550 intron GV1 + chr3L 1815620 intron GV1 + chr3L_7_1815001 chr3L_1815001 RAL-732 804 chr3L 2039372 2039391 chr3L 2039463 2039482 5 91 2.0 3.0 2.5 1.4 110 chr3L 2039372 intergenic sls - chr3L 2039427 intergenic sls - chr3L 2039482 intergenic sls - chr3L_5_2035001 chr3L_2035001 RAL-732 805 chr3L 2139205 2139223 chr3L 2139286 2139304 4 81 2.0 1.0 1.5 1.6 99 chr3L 2139205 intron zormin - chr3L 2139254 intron zormin - chr3L 2139304 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-732 806 chr3L 2168773 2168806 chr3L 2168863 2168897 5 91 1.5 3.0 2.2 1.6 124 chr3L 2168773 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-732 807 chr3L 2282860 2282881 chr3L 2283861 2283882 4 1001 14.5 17.5 16.0 0.2 1022 chr3L 2282860 intergenic MsR2 + chr3L 2283371 intron MsR2 + chr3L 2283882 intron MsR2 + chr3L_4_2280001 chr3L_2280001 RAL-732 808 chr3L 2293393 2293424 chr3L 2293473 2293504 10 80 4.0 2.5 3.2 2.4 111 chr3L 2293393 intron MsR2 + chr3L 2293448 intron MsR2 + chr3L 2293504 intron MsR2 + chr3L_10_2290001 chr3L_2290001 RAL-732 809 chr3L 2293850 2293867 chr3L 2293928 2293945 4 78 2.0 0.0 1.0 2.0 95 chr3L 2293850 intron MsR2 + chr3L 2293898 intron MsR2 + chr3L 2293945 intron MsR2 + chr3L_4_2290001 chr3L_2290001 RAL-732 810 chr3L 2317568 2317597 chr3L 2319382 2319411 9 1814 3.0 3.5 3.2 2.1 1843 chr3L 2317568 3` UTR CR45427 - chr3L 2318490 intergenic not near genes chr3L 2319411 3` UTR CR45426 - chr3L_9_2315001 chr3L_2315001 RAL-732 811 chr3L 2332979 2333010 chr3L 2333249 2333279 8 270 1.5 2.5 2.0 2.7 300 chr3L 2332979 intron MsR1 + chr3L 2333129 intron MsR1 + chr3L 2333279 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-732 812 chr3L 2447502 2447535 chr3L 2456658 2456691 roo 8 9156 3.5 2.0 2.8 2.1 9189 chr3L 2447502 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-732 813 chr3L 2459142 2459164 chr3L 2459303 2459325 6 161 2.0 1.5 1.8 2.1 183 chr3L 2459142 intron CG45186 + chr3L 2459234 intron CG45186 + chr3L 2459325 intron CG45186 + chr3L_6_2455001 chr3L_2455001 RAL-732 814 chr3L 2518252 2518259 chr3L 2518331 2518338 4 79 4.5 2.0 3.2 1.0 86 chr3L 2518252 intron,intron Spn -,CR45170 + chr3L 2518295 intron,intron Spn -,CR45170 + chr3L 2518338 intron,5` UTR Spn -,CR45170 + chr3L_4_2515001 chr3L_2515001 RAL-732 815 chr3L 2523510 2523518 chr3L 2523590 2523598 4 80 2.5 1.5 2.0 1.3 88 chr3L 2523510 intron Spn - chr3L 2523554 intron Spn - chr3L 2523598 intron Spn - chr3L_4_2520001 chr3L_2520001 RAL-732 816 chr3L 2533658 2533677 chr3L 2533739 2533759 10 82 6.0 9.0 7.5 1.2 101 chr3L 2533658 intron Spn - chr3L 2533708 intron Spn - chr3L 2533759 intron Spn - chr3L_10_2530001 chr3L_2530001 RAL-732 817 chr3L 2548253 2548286 chr3L 2548342 2548374 6 89 1.5 3.0 2.2 1.9 121 chr3L 2548253 intron Spn - chr3L 2548314 intron Spn - chr3L 2548374 intron Spn - chr3L_6_2545001 chr3L_2545001 RAL-732 818 chr3L 2558524 2558526 chr3L 22908066 22908067 4 20349542 3.0 15.0 9.0 0.4 20349543 chr3L 2558524 intron msn - chr3L 12733296 intergenic SmD1 - chr3L 22908067 intergenic not near genes chr3L_4_12730001 chr3L_12730001 RAL-732 819 chr3L 2683942 2683968 chr3L 2684018 2684044 8 76 1.5 2.5 2.0 2.7 102 chr3L 2683942 intron Fife - chr3L 2683993 intron Fife - chr3L 2684044 intron Fife - chr3L_8_2680001 chr3L_2680001 RAL-732 820 chr3L 2719537 2719558 chr3L 2719639 2719660 7 102 1.0 1.5 1.2 3.2 123 chr3L 2719537 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719660 3` UTR Mrtf - chr3L_7_2715001 chr3L_2715001 RAL-732 821 chr3L 2747394 2747396 chr3L 22908066 22908067 5 20160671 7.5 15.0 11.2 0.4 20160673 chr3L 2747394 intron Mrtf - chr3L 12827730 intron CG10960 - chr3L 22908067 intergenic not near genes chr3L_5_12825001 chr3L_12825001 RAL-732 822 chr3L 2766738 2766753 chr3L 2766835 2766847 6 96 0.5 2.0 1.2 2.7 109 chr3L 2766738 intergenic Mrtf -,Non2 + chr3L 2766792 intergenic Non2 +,Mrtf - chr3L 2766847 intergenic Non2 +,Mrtf - chr3L_6_2765001 chr3L_2765001 RAL-732 823 chr3L 2854486 2854500 chr3L 2854563 2854577 6 77 4.5 1.5 3.0 1.5 91 chr3L 2854486 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854577 intron CG43444 - chr3L_6_2850001 chr3L_2850001 RAL-732 824 chr3L 2927843 2927864 chr3L 2936119 2936139 Tirant 8 8277 1.0 2.0 1.5 3.2 8296 chr3L 2927843 intron Shab + chr3L 2931991 intron Shab + chr3L 2936139 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-732 825 chr3L 3028345 3028369 chr3L 3028424 3028448 6 79 4.5 4.0 4.2 1.2 103 chr3L 3028345 intergenic not near genes chr3L 3028396 intergenic not near genes chr3L 3028448 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-732 826 chr3L 3051745 3051752 chr3L 3051987 3051994 pogo 5 242 3.0 0.0 1.5 2.0 249 chr3L 3051745 3` UTR CG32485 + chr3L 3051870 intergenic CG32485 + chr3L 3051994 intergenic CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-732 827 chr3L 3061283 3061308 chr3L 3069866 3069890 Tirant 5 8583 2.5 2.0 2.2 1.6 8607 chr3L 3061283 intron CG32486 - chr3L 3065586 intron CG32486 - chr3L 3069890 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-732 828 chr3L 3102827 3102848 chr3L 3102913 3102934 8 86 2.5 5.0 3.8 1.7 107 chr3L 3102827 intron Cht7 - chr3L 3102880 intron Cht7 - chr3L 3102934 intron Cht7 - chr3L_8_3100001 chr3L_3100001 RAL-732 829 chr3L 3257089 3257100 chr3L 3257266 3257277 4 177 4.0 3.5 3.8 0.8 188 chr3L 3257089 intergenic not near genes chr3L 3257183 intergenic not near genes chr3L 3257277 intergenic not near genes chr3L_4_3255001 chr3L_3255001 RAL-732 830 chr3L 3281442 3281472 chr3L 3281938 3281968 Doc 15 496 3.5 6.0 4.8 2.6 526 chr3L 3281442 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_15_3280001 chr3L_3280001 RAL-732 831 chr3L 3310295 3310322 chr3L 3310374 3310401 9 79 1.0 2.0 1.5 3.6 106 chr3L 3310295 intron ZnT63C + chr3L 3310348 intron ZnT63C + chr3L 3310401 intron ZnT63C + chr3L_9_3310001 chr3L_3310001 RAL-732 832 chr3L 3475076 3475104 chr3L 3475520 3475548 jockey 8 444 4.0 1.0 2.5 2.3 472 chr3L 3475076 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475548 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-732 833 chr3L 3512959 3512977 chr3L 3513039 3513057 4 80 3.5 1.5 2.5 1.1 98 chr3L 3512959 intergenic ImpE2 - chr3L 3513008 intergenic ImpE2 - chr3L 3513057 intergenic ImpE2 - chr3L_4_3510001 chr3L_3510001 RAL-732 834 chr3L 3577738 3577759 chr3L 3577815 3577837 6 78 2.5 3.0 2.8 1.6 99 chr3L 3577738 intron Eip63E + chr3L 3577788 intron Eip63E + chr3L 3577837 intron Eip63E + chr3L_6_3575001 chr3L_3575001 RAL-732 835 chr3L 3601298 3601320 chr3L 3606609 3606630 copia 6 5310 5.5 2.5 4.0 1.2 5332 chr3L 3601298 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606630 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-732 836 chr3L 3766743 3766757 chr3L 3766829 3766843 6 86 1.0 0.0 0.5 4.0 100 chr3L 3766743 intron CG32264 - chr3L 3766793 intron CG32264 - chr3L 3766843 intron CG32264 - chr3L_6_3765001 chr3L_3765001 RAL-732 837 chr3L 3777066 3777067 chr3L 22908066 22908066 6 19131000 3.0 15.0 9.0 0.6 19131000 chr3L 3777066 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_13340001 chr3L_13340001 RAL-732 838 chr3L 3890979 3890984 chr3L 3891060 3891065 4 81 2.0 0.0 1.0 2.0 86 chr3L 3890979 intergenic not near genes chr3L 3891022 intergenic not near genes chr3L 3891065 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-732 839 chr3L 3926007 3926042 chr3L 3926098 3926135 4 92 2.0 0.0 1.0 2.0 128 chr3L 3926007 intron Eip63F-1 - chr3L 3926071 intron Eip63F-1 - chr3L 3926135 intron Eip63F-1 - chr3L_4_3925001 chr3L_3925001 RAL-732 840 chr3L 4005114 4005142 chr3L 4005207 4005236 8 93 3.5 3.0 3.2 1.9 122 chr3L 4005114 3` UTR CG14985 + chr3L 4005175 3` UTR CG14985 + chr3L 4005236 3` UTR CG14985 + chr3L_8_4005001 chr3L_4005001 RAL-732 841 chr3L 4170089 4170110 chr3L 4170257 4170279 6 169 0.5 2.0 1.2 2.7 190 chr3L 4170089 intergenic Ero1L + chr3L 4170184 intergenic Ero1L + chr3L 4170279 intergenic Ero1L + chr3L_6_4170001 chr3L_4170001 RAL-732 842 chr3L 4187330 4187336 chr3L 4187493 4187499 4 163 4.0 2.0 3.0 1.0 169 chr3L 4187330 intron,intron CG18675 +,Teh2 - chr3L 4187414 intron,intron CG18675 +,Teh2 - chr3L 4187499 intron,intron CG18675 +,Teh2 - chr3L_4_4185001 chr3L_4185001 RAL-732 843 chr3L 4209832 4209849 chr3L 4209910 4209927 6 78 2.5 3.5 3.0 1.5 95 chr3L 4209832 intron CG43367 + chr3L 4209880 intron CG43367 + chr3L 4209927 intron CG43367 + chr3L_6_4205001 chr3L_4205001 RAL-732 844 chr3L 4337573 4337589 chr3L 4337682 4337696 4 108 3.0 4.0 3.5 0.9 123 chr3L 4337573 intron Cip4 - chr3L 4337634 intron Cip4 - chr3L 4337696 intron Cip4 - chr3L_4_4335001 chr3L_4335001 RAL-732 845 chr3L 4384891 4384927 chr3L 4384984 4385020 7 93 1.0 2.0 1.5 2.8 129 chr3L 4384891 intron slow + chr3L 4384956 intron slow + chr3L 4385020 intron slow + chr3L_7_4380001 chr3L_4380001 RAL-732 846 chr3L 4604865 4604894 chr3L 4604976 4605005 13 111 2.0 1.5 1.8 4.6 140 chr3L 4604865 intron Src64B - chr3L 4604935 intron Src64B - chr3L 4605005 intron Src64B - chr3L_13_4600001 chr3L_4600001 RAL-732 847 chr3L 4668396 4668402 chr3L 4668769 4668775 4 372 0.0 0.0 0.0 4.0 379 chr3L 4668396 intron axo - chr3L 4668586 intron axo - chr3L 4668775 intron axo - chr3L_4_4665001 chr3L_4665001 RAL-732 848 chr3L 4726430 4726448 chr3L 4726511 4726529 7 81 5.5 2.5 4.0 1.4 99 chr3L 4726430 intron RhoGEF64C + chr3L 4726480 intron RhoGEF64C + chr3L 4726529 intron RhoGEF64C + chr3L_7_4725001 chr3L_4725001 RAL-732 849 chr3L 4748709 4748732 chr3L 4748800 4748823 5 91 3.0 5.0 4.0 1.0 114 chr3L 4748709 intron RhoGEF64C + chr3L 4748766 intron RhoGEF64C + chr3L 4748823 intron RhoGEF64C + chr3L_5_4745001 chr3L_4745001 RAL-732 850 chr3L 4858305 4858335 chr3L 4858395 4858425 22 90 3.5 2.5 3.0 5.5 120 chr3L 4858305 intergenic not near genes chr3L 4858365 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_22_4855001 chr3L_4855001 RAL-732 851 chr3L 4885579 4885589 chr3L 4885656 4885666 6 77 4.0 3.0 3.5 1.3 87 chr3L 4885579 intron CG17150 + chr3L 4885622 intron CG17150 + chr3L 4885666 intron CG17150 + chr3L_6_4885001 chr3L_4885001 RAL-732 852 chr3L 4901136 4901156 chr3L 4907326 4907346 diver 8 6190 4.5 0.5 2.5 2.3 6210 chr3L 4901136 intergenic CG13704 + chr3L 4904241 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-732 853 chr3L 4907977 4907989 chr3L 4908053 4908065 4 76 0.0 2.5 1.2 1.8 88 chr3L 4907977 intergenic not near genes chr3L 4908021 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-732 854 chr3L 5034160 5034190 chr3L 5043312 5043342 roo 7 9152 3.0 0.5 1.8 2.5 9182 chr3L 5034160 intron Con - chr3L 5038751 intron Con - chr3L 5043342 intron Con - chr3L_7_5035001 chr3L_5035001 RAL-732 855 chr3L 5104490 5104512 chr3L 5124624 5124646 5 20134 0.0 0.5 0.2 4.2 20156 chr3L 5104490 intergenic not near genes chr3L 5114568 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-732 856 chr3L 5130932 5130954 chr3L 5131035 5131057 7 103 3.5 1.0 2.2 2.2 125 chr3L 5130932 intergenic not near genes chr3L 5130994 intergenic not near genes chr3L 5131057 intergenic CG15212 + chr3L_7_5130001 chr3L_5130001 RAL-732 857 chr3L 5164638 5164668 chr3L 5164714 5164744 10 76 2.0 1.0 1.5 4.0 106 chr3L 5164638 intron shep - chr3L 5164691 intron shep - chr3L 5164744 intron shep - chr3L_10_5160001 chr3L_5160001 RAL-732 858 chr3L 5257629 5257660 chr3L 5257917 5257948 7 288 4.0 2.5 3.2 1.7 319 chr3L 5257629 intron shep - chr3L 5257788 intron shep - chr3L 5257948 intron shep - chr3L_7_5255001 chr3L_5255001 RAL-732 859 chr3L 5261165 5261182 chr3L 5261244 5261261 5 79 2.0 1.5 1.8 1.8 96 chr3L 5261165 intron shep - chr3L 5261213 intron shep - chr3L 5261261 intron shep - chr3L_5_5260001 chr3L_5260001 RAL-732 860 chr3L 5299155 5299181 chr3L 5306591 5306617 Quasimodo 5 7436 0.5 0.5 0.5 3.3 7462 chr3L 5299155 intergenic not near genes chr3L 5302886 intergenic not near genes chr3L 5306617 intergenic not near genes chr3L_5_5300001 chr3L_5300001 RAL-732 861 chr3L 5339826 5339852 chr3L 5340070 5340096 5 244 2.5 2.0 2.2 1.6 270 chr3L 5339826 intergenic not near genes chr3L 5339961 intergenic not near genes chr3L 5340096 intergenic not near genes chr3L_5_5335001 chr3L_5335001 RAL-732 862 chr3L 5388201 5388230 chr3L 5388525 5388554 6 324 3.0 3.0 3.0 1.5 353 chr3L 5388201 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388554 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-732 863 chr3L 5516407 5516441 chr3L 5516502 5516536 4 95 1.0 2.5 1.8 1.4 129 chr3L 5516407 intron Lkr - chr3L 5516472 intron Lkr - chr3L 5516536 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-732 864 chr3L 5526971 5527198 chr3L 5527057 5527303 6 102 2.5 0.0 1.2 2.7 332 chr3L 5526971 intron Lkr - chr3L 5527137 intron Lkr - chr3L 5527303 intron Lkr - chr3L_6_5525001 chr3L_5525001 RAL-732 865 chr3L 5537725 5537750 chr3L 5538067 5538092 jockey 4 342 1.0 4.0 2.5 1.1 367 chr3L 5537725 intergenic not near genes chr3L 5537908 intergenic not near genes chr3L 5538092 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-732 866 chr3L 5615063 5615077 chr3L 5615157 5615171 5 94 3.0 1.0 2.0 1.7 108 chr3L 5615063 intergenic not near genes chr3L 5615117 intergenic not near genes chr3L 5615171 intergenic not near genes chr3L_5_5615001 chr3L_5615001 RAL-732 867 chr3L 5855570 5855571 chr3L 22908066 22908067 7 17052496 3.0 15.0 9.0 0.7 17052497 chr3L 5855570 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_7_14380001 chr3L_14380001 RAL-732 868 chr3L 5910044 5910062 chr3L 5910285 5910303 pogo 5 241 1.0 6.5 3.8 1.0 259 chr3L 5910044 intron CG13288 + chr3L 5910174 intron CG13288 + chr3L 5910303 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-732 869 chr3L 5926316 5926343 chr3L 5926506 5926533 BS 7 190 3.5 3.0 3.2 1.7 217 chr3L 5926316 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926533 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-732 870 chr3L 5983831 5983838 chr3L 5983952 5983959 4 121 8.5 0.0 4.2 0.8 128 chr3L 5983831 3` UTR CR45439 - chr3L 5983895 intergenic CR45439 -,CR45440 - chr3L 5983959 intergenic CR45439 -,CR45440 - chr3L_4_5980001 chr3L_5980001 RAL-732 871 chr3L 5996407 5996427 chr3L 5996690 5996711 6 284 0.5 2.0 1.2 2.7 304 chr3L 5996407 intergenic not near genes chr3L 5996559 intergenic not near genes chr3L 5996711 intergenic PVRAP + chr3L_6_5995001 chr3L_5995001 RAL-732 872 chr3L 6001680 6001709 chr3L 6004380 6004409 jockey 7 2700 2.0 1.0 1.5 2.8 2729 chr3L 6001680 intron PVRAP + chr3L 6003044 intron PVRAP + chr3L 6004409 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-732 873 chr3L 6040368 6040394 chr3L 6042721 6042750 Doc 8 2356 1.0 2.0 1.5 3.2 2382 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041559 intergenic not near genes chr3L 6042750 intergenic not near genes chr3L_8_6040001 chr3L_6040001 RAL-732 874 chr3L 6052649 6052666 chr3L 6052734 6052751 13 85 5.0 13.0 9.0 1.3 102 chr3L 6052649 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052751 exon Jon65Aii + chr3L_13_6050001 chr3L_6050001 RAL-732 875 chr3L 6063942 6063959 chr3L 6064026 6064043 4 84 1.5 2.0 1.8 1.4 101 chr3L 6063942 intergenic not near genes chr3L 6063992 intergenic not near genes chr3L 6064043 intergenic not near genes chr3L_4_6060001 chr3L_6060001 RAL-732 876 chr3L 6159867 6159891 chr3L 6159957 6159980 8 90 5.0 2.5 3.8 1.7 113 chr3L 6159867 intergenic not near genes chr3L 6159924 intergenic not near genes chr3L 6159980 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-732 877 chr3L 6220915 6220946 chr3L 6230067 6230098 roo 8 9152 5.5 1.5 3.5 1.8 9183 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_8_6225001 chr3L_6225001 RAL-732 878 chr3L 6335011 6335030 chr3L 6335482 6335501 297 7 471 2.5 3.5 3.0 1.8 490 chr3L 6335011 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335501 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-732 879 chr3L 6405665 6405690 chr3L 6432129 6432154 roo 8 26464 3.5 0.5 2.0 2.7 26489 chr3L 6405665 intron CG42747 + chr3L 6418910 intron CG42747 + chr3L 6432154 intron CG42747 + chr3L_8_6415001 chr3L_6415001 RAL-732 880 chr3L 6463223 6463238 chr3L 6463387 6463402 4 164 1.5 2.0 1.8 1.4 179 chr3L 6463223 intron CG42747 + chr3L 6463312 intron CG42747 + chr3L 6463402 intron CG42747 + chr3L_4_6460001 chr3L_6460001 RAL-732 881 chr3L 6575545 6575565 chr3L 6575704 6575724 4 159 1.5 2.0 1.8 1.4 179 chr3L 6575545 intron,intron CG18769 +,jv - chr3L 6575634 intron,intron CG18769 +,jv - chr3L 6575724 intron,intron CG18769 +,jv - chr3L_4_6575001 chr3L_6575001 RAL-732 882 chr3L 6619265 6619299 chr3L 6619428 6619462 9 163 2.0 2.5 2.2 2.8 197 chr3L 6619265 intergenic CG8398 + chr3L 6619364 intergenic CG8398 + chr3L 6619462 intergenic CG8398 + chr3L_9_6615001 chr3L_6615001 RAL-732 883 chr3L 6627147 6627168 chr3L 6627234 6627255 5 87 2.0 2.5 2.2 1.6 108 chr3L 6627147 intron GluRIA + chr3L 6627201 intron GluRIA + chr3L 6627255 intron GluRIA + chr3L_5_6625001 chr3L_6625001 RAL-732 884 chr3L 6642870 6642890 chr3L 6642950 6642970 4 80 0.5 0.0 0.2 3.3 100 chr3L 6642870 intergenic CR45239 + chr3L 6642920 intergenic CR45239 + chr3L 6642970 intergenic CR45239 + chr3L_4_6640001 chr3L_6640001 RAL-732 885 chr3L 6652083 6652110 chr3L 6652161 6652188 9 78 2.5 2.5 2.5 2.6 105 chr3L 6652083 intergenic not near genes chr3L 6652136 intergenic not near genes chr3L 6652188 intergenic not near genes chr3L_9_6650001 chr3L_6650001 RAL-732 886 chr3L 6654185 6654207 chr3L 6654324 6654349 6 141 3.0 5.5 4.2 1.2 164 chr3L 6654185 intergenic not near genes chr3L 6654267 intergenic not near genes chr3L 6654349 intergenic not near genes chr3L_6_6650001 chr3L_6650001 RAL-732 887 chr3L 6680038 6680059 chr3L 6680271 6680292 13 233 3.5 3.0 3.2 3.1 254 chr3L 6680038 intergenic not near genes chr3L 6680165 intergenic not near genes chr3L 6680292 intergenic not near genes chr3L_13_6680001 chr3L_6680001 RAL-732 888 chr3L 6855920 6855954 chr3L 6860703 6860738 Doc 4 4783 2.0 1.5 1.8 1.4 4818 chr3L 6855920 intergenic not near genes chr3L 6858329 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-732 889 chr3L 6868731 6868740 chr3L 6868809 6868818 4 78 0.5 1.5 1.0 2.0 87 chr3L 6868731 intergenic not near genes chr3L 6868774 intergenic not near genes chr3L 6868818 intergenic not near genes chr3L_4_6865001 chr3L_6865001 RAL-732 890 chr3L 6887520 6887547 chr3L 6895012 6895039 roo 5 7492 2.0 1.0 1.5 2.0 7519 chr3L 6887520 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895039 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-732 891 chr3L 6990719 6990747 chr3L 6990799 6990827 4 80 1.0 2.5 1.8 1.4 108 chr3L 6990719 5` UTR bin + chr3L 6990773 5` UTR bin + chr3L 6990827 5` UTR bin + chr3L_4_6990001 chr3L_6990001 RAL-732 892 chr3L 7057742 7057761 chr3L 7058546 7058563 4 803 2.0 4.0 3.0 1.0 821 chr3L 7057742 intergenic not near genes chr3L 7058152 intergenic not near genes chr3L 7058563 intergenic CG8641 - chr3L_4_7055001 chr3L_7055001 RAL-732 893 chr3L 7090923 7090943 chr3L 7091006 7091027 5 83 0.0 2.5 1.2 2.3 104 chr3L 7090923 intergenic not near genes chr3L 7090975 intergenic not near genes chr3L 7091027 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-732 894 chr3L 7173927 7173958 chr3L 7174020 7174054 7 95 1.0 1.5 1.2 3.2 127 chr3L 7173927 intron Dscam2 - chr3L 7173990 intron Dscam2 - chr3L 7174054 intron Dscam2 - chr3L_7_7170001 chr3L_7170001 RAL-732 895 chr3L 7244932 7244957 chr3L 7245024 7245049 7 92 5.0 3.0 4.0 1.4 117 chr3L 7244932 exon mei-P22 + chr3L 7244990 exon mei-P22 + chr3L 7245049 exon mei-P22 + chr3L_7_7240001 chr3L_7240001 RAL-732 896 chr3L 7287739 7287751 chr3L 7288114 7288127 4 375 2.0 2.5 2.2 1.2 388 chr3L 7287739 intron unc-13-4A - chr3L 7287933 intron unc-13-4A - chr3L 7288127 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-732 897 chr3L 7358296 7358319 chr3L 7359581 7359602 9 1284 23.5 21.0 22.2 0.4 1306 chr3L 7358296 exon pst - chr3L 7358949 exon pst - chr3L 7359602 exon pst - chr3L_9_7355001 chr3L_7355001 RAL-732 898 chr3L 7377315 7377348 chr3L 7380420 7380453 297 6 3105 0.5 1.0 0.8 3.3 3138 chr3L 7377315 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380453 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-732 899 chr3L 7444024 7444046 chr3L 7444122 7444145 5 99 1.5 0.0 0.8 2.8 121 chr3L 7444024 intron CG42458 + chr3L 7444084 intron CG42458 + chr3L 7444145 intron CG42458 + chr3L_5_7440001 chr3L_7440001 RAL-732 900 chr3L 7449445 7449455 chr3L 7449523 7449533 4 78 0.0 7.0 3.5 0.9 88 chr3L 7449445 intron CG42458 + chr3L 7449489 intron CG42458 + chr3L 7449533 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-732 901 chr3L 7462960 7462988 chr3L 7463036 7463067 9 77 1.0 1.0 1.0 4.5 107 chr3L 7462960 intergenic not near genes chr3L 7463014 intergenic not near genes chr3L 7463067 intergenic not near genes chr3L_9_7460001 chr3L_7460001 RAL-732 902 chr3L 7498758 7498791 chr3L 7503535 7503568 F-element 7 4777 2.5 1.0 1.8 2.5 4810 chr3L 7498758 5` UTR CG8539 - chr3L 7501163 intergenic not near genes chr3L 7503568 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-732 903 chr3L 7505786 7505798 chr3L 7505873 7505887 6 88 17.5 13.5 15.5 0.4 101 chr3L 7505786 exon CG7548 - chr3L 7505836 exon CG7548 - chr3L 7505887 exon CG7548 - chr3L_6_7505001 chr3L_7505001 RAL-732 904 chr3L 7508678 7508706 chr3L 7508762 7508790 5 84 0.0 1.5 0.8 2.8 112 chr3L 7508678 intergenic not near genes chr3L 7508734 intergenic not near genes chr3L 7508790 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-732 905 chr3L 7572282 7572312 chr3L 7572369 7572398 7 87 0.5 2.5 1.5 2.8 116 chr3L 7572282 intergenic not near genes chr3L 7572340 intergenic not near genes chr3L 7572398 intergenic not near genes chr3L_7_7570001 chr3L_7570001 RAL-732 906 chr3L 7574212 7574230 chr3L 7574292 7574310 6 80 3.0 2.5 2.8 1.6 98 chr3L 7574212 intergenic not near genes chr3L 7574261 intergenic not near genes chr3L 7574310 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-732 907 chr3L 7591144 7591182 chr3L 7591235 7591273 6 90 1.0 1.5 1.2 2.7 129 chr3L 7591144 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591273 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-732 908 chr3L 7633702 7633719 chr3L 7633855 7633873 6 153 1.0 3.0 2.0 2.0 171 chr3L 7633702 intron CG33275 + chr3L 7633788 intron CG33275 + chr3L 7633873 intron CG33275 + chr3L_6_7630001 chr3L_7630001 RAL-732 909 chr3L 7711834 7711841 chr3L 7711909 7711917 4 76 1.0 2.5 1.8 1.4 83 chr3L 7711834 intron,intron CG32373 +,Ank2 - chr3L 7711876 intron,intron CG32373 +,Ank2 - chr3L 7711917 intron,intron CG32373 +,Ank2 - chr3L_4_7710001 chr3L_7710001 RAL-732 910 chr3L 7749470 7749471 chr3L 11777678 11777678 7 4028207 8.5 13.5 11.0 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_9760001 chr3L_9760001 RAL-732 911 chr3L 7760084 7760107 chr3L 7760160 7760183 4 76 1.0 2.5 1.8 1.4 99 chr3L 7760084 intergenic Hn + chr3L 7760134 intergenic Hn + chr3L 7760183 intergenic Hn + chr3L_4_7760001 chr3L_7760001 RAL-732 912 chr3L 7793711 7793738 chr3L 7800763 7800790 297 7 7052 1.5 2.5 2.0 2.3 7079 chr3L 7793711 intron CG32369 - chr3L 7797250 intron CG32369 - chr3L 7800790 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-732 913 chr3L 7835415 7835449 chr3L 7835493 7835525 9 77 2.0 3.5 2.8 2.4 110 chr3L 7835415 intron Pdp1 - chr3L 7835470 intron Pdp1 - chr3L 7835525 intron Pdp1 - chr3L_9_7835001 chr3L_7835001 RAL-732 914 chr3L 7875039 7875053 chr3L 7876869 7876883 5 1830 5.0 9.5 7.2 0.6 1844 chr3L 7875039 intron CG32365 + chr3L 7875961 intron CG32365 + chr3L 7876883 intron CG32365 + chr3L_5_7875001 chr3L_7875001 RAL-732 915 chr3L 7886441 7886466 chr3L 7886519 7886547 6 81 2.5 0.0 1.2 2.7 106 chr3L 7886441 intron CG32365 + chr3L 7886494 intron CG32365 + chr3L 7886547 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-732 916 chr3L 7886526 7886546 chr3L 7889044 7889064 Stalker4 9 2518 0.0 4.5 2.2 2.8 2538 chr3L 7886526 intron CG32365 + chr3L 7887795 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-732 917 chr3L 7942042 7942047 chr3L 7942145 7942150 4 103 0.0 1.5 0.8 2.2 108 chr3L 7942042 intergenic not near genes chr3L 7942096 intergenic not near genes chr3L 7942150 intergenic not near genes chr3L_4_7940001 chr3L_7940001 RAL-732 918 chr3L 7985365 7985393 chr3L 7987693 7987721 NOF 7 2328 2.0 1.0 1.5 2.8 2356 chr3L 7985365 intron nmo + chr3L 7986543 intron nmo + chr3L 7987721 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-732 919 chr3L 7995347 7995367 chr3L 7995510 7995531 4 163 0.0 2.0 1.0 2.0 184 chr3L 7995347 intron nmo + chr3L 7995439 intron nmo + chr3L 7995531 intron nmo + chr3L_4_7995001 chr3L_7995001 RAL-732 920 chr3L 8243451 8243469 chr3L 8243538 8243556 5 87 5.0 2.5 3.8 1.0 105 chr3L 8243451 intron Dscam4 + chr3L 8243504 intron Dscam4 + chr3L 8243556 intron Dscam4 + chr3L_5_8240001 chr3L_8240001 RAL-732 921 chr3L 8243816 8243848 chr3L 8243899 8243931 13 83 1.5 1.0 1.2 5.9 115 chr3L 8243816 intron Dscam4 + chr3L 8243874 intron Dscam4 + chr3L 8243931 intron Dscam4 + chr3L_13_8240001 chr3L_8240001 RAL-732 922 chr3L 8317593 8317596 chr3L 22908066 22908067 16 14590470 0.5 15.0 7.8 1.8 14590474 chr3L 8317593 intergenic not near genes chr3L 15612830 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_16_15610001 chr3L_15610001 RAL-732 923 chr3L 8456474 8456485 chr3L 8456568 8456580 8 94 6.0 7.0 6.5 1.1 106 chr3L 8456474 intron Gug + chr3L 8456527 intron Gug + chr3L 8456580 intron Gug + chr3L_8_8455001 chr3L_8455001 RAL-732 924 chr3L 8481782 8481804 chr3L 8490940 8490962 roo 5 9158 2.0 1.5 1.8 1.8 9180 chr3L 8481782 intron CG43163 - chr3L 8486372 intron CG43163 - chr3L 8490962 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-732 925 chr3L 8692992 8693021 chr3L 8693098 8693127 9 106 4.0 1.0 2.5 2.6 135 chr3L 8692992 5` UTR CR44526 + chr3L 8693060 5` UTR CR44526 + chr3L 8693127 5` UTR CR44526 + chr3L_9_8690001 chr3L_8690001 RAL-732 926 chr3L 8791280 8791304 chr3L 8796700 8796724 I-element 8 5420 6.0 3.5 4.8 1.4 5444 chr3L 8791280 exon Fhos + chr3L 8794002 intron Fhos + chr3L 8796724 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-732 927 chr3L 8876615 8876634 chr3L 8876914 8876933 4 299 0.0 6.5 3.2 1.0 318 chr3L 8876615 intron dally + chr3L 8876774 intron dally + chr3L 8876933 intron dally + chr3L_4_8875001 chr3L_8875001 RAL-732 928 chr3L 9003949 9003977 chr3L 9004034 9004062 7 85 1.0 3.0 2.0 2.3 113 chr3L 9003949 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-732 929 chr3L 9008642 9008675 chr3L 9008725 9008758 10 83 2.5 4.0 3.2 2.4 116 chr3L 9008642 3` UTR CG5194 - chr3L 9008700 3` UTR CG5194 - chr3L 9008758 exon CG5194 - chr3L_10_9005001 chr3L_9005001 RAL-732 930 chr3L 9010653 9010684 chr3L 9010728 9010760 14 76 1.5 3.0 2.2 4.4 107 chr3L 9010653 intergenic not near genes chr3L 9010706 intergenic not near genes chr3L 9010760 intergenic not near genes chr3L_14_9010001 chr3L_9010001 RAL-732 931 chr3L 9028056 9028087 chr3L 9028155 9028189 9 102 1.5 2.0 1.8 3.2 133 chr3L 9028056 intergenic not near genes chr3L 9028122 intergenic not near genes chr3L 9028189 intergenic not near genes chr3L_9_9025001 chr3L_9025001 RAL-732 932 chr3L 9076932 9076960 chr3L 9084492 9084520 412 11 7560 3.5 4.5 4.0 2.2 7588 chr3L 9076932 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084520 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-732 933 chr3L 9130560 9130581 chr3L 9134320 9134342 412 6 3761 3.5 2.0 2.8 1.6 3782 chr3L 9130560 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-732 934 chr3L 9164697 9164725 chr3L 9166164 9166192 hobo 10 1467 1.5 0.0 0.8 5.6 1495 chr3L 9164697 intron Rdl - chr3L 9165444 intron Rdl - chr3L 9166192 intron Rdl - chr3L_10_9165001 chr3L_9165001 RAL-732 935 chr3L 9219242 9219275 chr3L 9219914 9219947 jockey 8 672 3.0 2.0 2.5 2.3 705 chr3L 9219242 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219947 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-732 936 chr3L 9290056 9290077 chr3L 9290132 9290153 7 76 0.0 0.0 0.0 7.0 97 chr3L 9290056 intergenic not near genes chr3L 9290104 intergenic not near genes chr3L 9290153 intergenic not near genes chr3L_7_9290001 chr3L_9290001 RAL-732 937 chr3L 9344206 9344216 chr3L 9344284 9344294 6 78 0.0 1.5 0.8 3.3 88 chr3L 9344206 intron PGRP-LC + chr3L 9344250 intron PGRP-LC + chr3L 9344294 intron PGRP-LC + chr3L_6_9340001 chr3L_9340001 RAL-732 938 chr3L 9526488 9526508 chr3L 9528168 9528188 Doc 4 1680 1.5 2.0 1.8 1.4 1700 chr3L 9526488 intergenic not near genes chr3L 9527338 intergenic not near genes chr3L 9528188 intergenic not near genes chr3L_4_9525001 chr3L_9525001 RAL-732 939 chr3L 9533764 9533780 chr3L 9541322 9541340 412 4 7560 3.0 6.5 4.8 0.7 7576 chr3L 9533764 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541340 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-732 940 chr3L 9575920 9575932 chr3L 9580998 9581010 jockey 7 5077 3.5 4.0 3.8 1.5 5090 chr3L 9575920 intron CG42673 + chr3L 9578465 intron CG42673 + chr3L 9581010 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-732 941 chr3L 9637854 9637882 chr3L 9637936 9637964 9 82 3.0 2.0 2.5 2.6 110 chr3L 9637854 intron fry - chr3L 9637909 intron fry - chr3L 9637964 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-732 942 chr3L 9639035 9639062 chr3L 9639120 9639146 8 85 0.0 4.5 2.2 2.5 111 chr3L 9639035 intron fry - chr3L 9639090 intron fry - chr3L 9639146 intron fry - chr3L_8_9635001 chr3L_9635001 RAL-732 943 chr3L 9732420 9732444 chr3L 9732498 9732522 7 78 2.0 0.5 1.2 3.2 102 chr3L 9732420 exon CG6749 - chr3L 9732471 intron CG6749 - chr3L 9732522 intron CG6749 - chr3L_7_9730001 chr3L_9730001 RAL-732 944 chr3L 9871196 9871216 chr3L 9871290 9871312 9 96 3.5 3.0 3.2 2.1 116 chr3L 9871196 intergenic not near genes chr3L 9871254 intergenic not near genes chr3L 9871312 intergenic not near genes chr3L_9_9870001 chr3L_9870001 RAL-732 945 chr3L 9929677 9929698 chr3L 9938457 9938479 roo 5 8781 1.5 2.5 2.0 1.7 8802 chr3L 9929677 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-732 946 chr3L 10014289 10014302 chr3L 10014437 10014450 4 148 3.0 2.5 2.8 1.1 161 chr3L 10014289 intron dpr6 + chr3L 10014370 intron dpr6 + chr3L 10014450 intron dpr6 + chr3L_4_10010001 chr3L_10010001 RAL-732 947 chr3L 10161438 10161458 chr3L 10161517 10161537 7 79 0.0 1.0 0.5 4.7 99 chr3L 10161438 intron dpr10 - chr3L 10161488 intron dpr10 - chr3L 10161537 intron dpr10 - chr3L_7_10160001 chr3L_10160001 RAL-732 948 chr3L 10308741 10308771 chr3L 10308818 10308848 9 77 1.5 3.0 2.2 2.8 107 chr3L 10308741 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_9_10305001 chr3L_10305001 RAL-732 949 chr3L 10399532 10399547 chr3L 10399631 10399646 4 99 1.5 0.5 1.0 2.0 114 chr3L 10399532 intergenic not near genes chr3L 10399589 intergenic not near genes chr3L 10399646 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-732 950 chr3L 10414943 10414975 chr3L 10417315 10417347 Doc 5 2371 0.5 3.0 1.8 1.8 2404 chr3L 10414943 intergenic CG12362 + chr3L 10416145 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-732 951 chr3L 10417569 10417598 chr3L 10417646 10417675 7 77 3.5 1.5 2.5 2.0 106 chr3L 10417569 intergenic not near genes chr3L 10417622 intergenic not near genes chr3L 10417675 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-732 952 chr3L 10423058 10423085 chr3L 10423183 10423210 5 125 0.5 1.5 1.0 2.5 152 chr3L 10423058 intergenic not near genes chr3L 10423134 intergenic not near genes chr3L 10423210 intergenic not near genes chr3L_5_10420001 chr3L_10420001 RAL-732 953 chr3L 10600457 10600467 chr3L 10600539 10600549 5 82 3.0 2.0 2.5 1.4 92 chr3L 10600457 intergenic not near genes chr3L 10600503 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-732 954 chr3L 10658078 10658210 chr3L 10658155 10658337 14 105 1.0 1.0 1.0 7.0 259 chr3L 10658078 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658337 intron CG32066 - chr3L_14_10655001 chr3L_10655001 RAL-732 955 chr3L 10721990 10722009 chr3L 10722072 10722091 4 82 1.0 0.0 0.5 2.7 101 chr3L 10721990 intergenic not near genes chr3L 10722040 intergenic not near genes chr3L 10722091 intergenic not near genes chr3L_4_10720001 chr3L_10720001 RAL-732 956 chr3L 10745538 10745560 chr3L 10745618 10745640 5 79 3.0 1.0 2.0 1.7 102 chr3L 10745538 intergenic not near genes chr3L 10745589 intergenic not near genes chr3L 10745640 intergenic not near genes chr3L_5_10745001 chr3L_10745001 RAL-732 957 chr3L 10887361 10887377 chr3L 10887440 10887456 7 79 0.0 2.5 1.2 3.2 95 chr3L 10887361 intergenic not near genes chr3L 10887408 intergenic not near genes chr3L 10887456 intergenic not near genes chr3L_7_10885001 chr3L_10885001 RAL-732 958 chr3L 11042118 11042141 chr3L 11042257 11042280 6 139 2.5 0.0 1.2 2.7 162 chr3L 11042118 intron CG43693 - chr3L 11042199 intron CG43693 - chr3L 11042280 intron CG43693 - chr3L_6_11040001 chr3L_11040001 RAL-732 959 chr3L 11083502 11083535 chr3L 11083600 11083632 9 98 2.0 1.5 1.8 3.2 130 chr3L 11083502 intron JIL-1 - chr3L 11083567 intron JIL-1 - chr3L 11083632 intron JIL-1 - chr3L_9_11080001 chr3L_11080001 RAL-732 960 chr3L 11085686 11085695 chr3L 11085769 11085778 7 83 3.0 3.0 3.0 1.8 92 chr3L 11085686 exon JIL-1 - chr3L 11085732 intron JIL-1 - chr3L 11085778 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-732 961 chr3L 11087068 11087085 chr3L 11088857 11088874 S-element 5 1789 0.0 5.0 2.5 1.4 1806 chr3L 11087068 intron JIL-1 - chr3L 11087971 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-732 962 chr3L 11105293 11105319 chr3L 11107004 11107030 X-element 6 1711 3.0 2.5 2.8 1.6 1737 chr3L 11105293 intergenic not near genes chr3L 11106162 intergenic not near genes chr3L 11107030 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-732 963 chr3L 11305797 11305808 chr3L 22908066 22908066 10 11602261 6.5 15.0 10.8 0.8 11602269 chr3L 11305797 intergenic not near genes chr3L 17106932 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_10_17105001 chr3L_17105001 RAL-732 964 chr3L 11324277 11324285 chr3L 11324374 11324381 4 97 0.0 3.5 1.8 1.4 104 chr3L 11324277 intergenic CR44723 -,CR44721 -,CR44722 + chr3L 11324329 3` UTR CR44723 - chr3L 11324381 3` UTR CR44723 - chr3L_4_11320001 chr3L_11320001 RAL-732 965 chr3L 11329690 11329717 chr3L 11332895 11332922 jockey 4 3203 3.5 2.0 2.8 1.1 3232 chr3L 11329690 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332922 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-732 966 chr3L 11456698 11456733 chr3L 11456782 11456816 16 84 2.0 4.5 3.2 3.8 118 chr3L 11456698 intergenic CG12289 - chr3L 11456757 intergenic CG12289 - chr3L 11456816 intergenic CG12289 - chr3L_16_11455001 chr3L_11455001 RAL-732 967 chr3L 11493163 11493188 chr3L 11493245 11493267 4 81 0.5 1.5 1.0 2.0 104 chr3L 11493163 intron chrb + chr3L 11493215 intron chrb + chr3L 11493267 intron chrb + chr3L_4_11490001 chr3L_11490001 RAL-732 968 chr3L 11564790 11564810 chr3L 11572415 11572435 412 8 7625 2.0 5.5 3.8 1.7 7645 chr3L 11564790 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572435 exon CG33267 + chr3L_8_11565001 chr3L_11565001 RAL-732 969 chr3L 11676794 11676829 chr3L 11676876 11676911 15 82 4.5 3.0 3.8 3.1 117 chr3L 11676794 intron CG32085 - chr3L 11676852 intron CG32085 - chr3L 11676911 intron CG32085 - chr3L_15_11675001 chr3L_11675001 RAL-732 970 chr3L 11723086 11723113 chr3L 11727881 11727908 Doc 10 4795 2.0 4.0 3.0 2.5 4822 chr3L 11723086 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_10_11725001 chr3L_11725001 RAL-732 971 chr3L 11744011 11744041 chr3L 11744119 11744149 9 108 3.0 0.0 1.5 3.6 138 chr3L 11744011 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-732 972 chr3L 11850141 11850165 chr3L 11850236 11850260 10 95 4.0 0.0 2.0 3.3 119 chr3L 11850141 intergenic not near genes chr3L 11850200 intergenic CG44837 - chr3L 11850260 intergenic CG44837 - chr3L_10_11850001 chr3L_11850001 RAL-732 973 chr3L 11861277 11861306 chr3L 11861366 11861395 6 89 1.5 3.0 2.2 1.9 118 chr3L 11861277 intron CG44837 - chr3L 11861336 intron CG44837 - chr3L 11861395 intron CG44837 - chr3L_6_11860001 chr3L_11860001 RAL-732 974 chr3L 11864566 11864585 chr3L 11865860 11865880 pogo 6 1295 0.5 3.0 1.8 2.1 1314 chr3L 11864566 intron CG44837 - chr3L 11865223 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-732 975 chr3L 11943508 11943515 chr3L 11943609 11943616 4 101 0.0 3.5 1.8 1.4 108 chr3L 11943508 intergenic Rpt4R +,CG5883 - chr3L 11943562 intergenic Rpt4R +,CG5883 - chr3L 11943616 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-732 976 chr3L 11984568 11984582 chr3L 11984659 11984673 7 90 7.0 0.0 3.5 1.6 105 chr3L 11984568 intergenic CG6938 + chr3L 11984620 intergenic CG6938 + chr3L 11984673 intergenic CG6938 + chr3L_7_11980001 chr3L_11980001 RAL-732 977 chr3L 12013914 12013938 chr3L 12014005 12014029 8 91 1.0 4.0 2.5 2.3 115 chr3L 12013914 intron rols - chr3L 12013972 intron rols - chr3L 12014029 intron rols - chr3L_8_12010001 chr3L_12010001 RAL-732 978 chr3L 12075430 12075447 chr3L 12075519 12075536 4 89 3.0 0.0 1.5 1.6 106 chr3L 12075430 intron Sema-5c - chr3L 12075483 intron Sema-5c - chr3L 12075536 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-732 979 chr3L 12089081 12089111 chr3L 12089161 12089191 13 80 1.5 2.0 1.8 4.6 110 chr3L 12089081 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089191 3` UTR CG17154 + chr3L_13_12085001 chr3L_12085001 RAL-732 980 chr3L 12170811 12170816 chr3L 12170893 12170898 4 82 0.0 3.0 1.5 1.6 87 chr3L 12170811 intron Rh7 - chr3L 12170854 intron Rh7 - chr3L 12170898 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-732 981 chr3L 12231373 12231399 chr3L 12231672 12231698 6 299 16.5 19.5 18.0 0.3 325 chr3L 12231373 intron app - chr3L 12231536 intron app - chr3L 12231698 intron app - chr3L_6_12230001 chr3L_12230001 RAL-732 982 chr3L 12240769 12240788 chr3L 12240880 12240897 4 110 2.5 3.5 3.0 1.0 128 chr3L 12240769 intron app - chr3L 12240833 intron app - chr3L 12240897 intron app - chr3L_4_12240001 chr3L_12240001 RAL-732 983 chr3L 12304092 12304118 chr3L 12304167 12304194 8 76 2.0 2.5 2.2 2.5 102 chr3L 12304092 intergenic not near genes chr3L 12304143 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-732 984 chr3L 12335388 12335404 chr3L 12335467 12335483 6 79 6.0 4.0 5.0 1.0 95 chr3L 12335388 exon CG32105 + chr3L 12335436 3` UTR CG32105 + chr3L 12335483 3` UTR CG32105 + chr3L_6_12335001 chr3L_12335001 RAL-732 985 chr3L 12343754 12343782 chr3L 12344966 12344994 7 1212 3.5 1.5 2.5 2.0 1240 chr3L 12343754 intron CrzR - chr3L 12344374 intron CrzR - chr3L 12344994 intron CrzR - chr3L_7_12340001 chr3L_12340001 RAL-732 986 chr3L 12369538 12369567 chr3L 12369628 12369657 8 90 1.0 0.0 0.5 5.3 119 chr3L 12369538 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369657 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-732 987 chr3L 12394529 12394533 chr3L 22908066 22908067 5 10513535 10.5 15.0 12.8 0.4 10513538 chr3L 12394529 intron CG32104 - chr3L 17651298 intron,intron Ndfip -,Krn - chr3L 22908067 intergenic not near genes chr3L_5_17650001 chr3L_17650001 RAL-732 988 chr3L 12482841 12482844 chr3L 12482917 12482920 4 76 2.5 0.0 1.2 1.8 79 chr3L 12482841 intron,intron CG10663 -,CG33725 + chr3L 12482880 intron,intron CG10663 -,CG33725 + chr3L 12482920 intron,intron CG10663 -,CG33725 + chr3L_4_12480001 chr3L_12480001 RAL-732 989 chr3L 12491704 12491730 chr3L 12491785 12491813 5 83 1.5 2.0 1.8 1.8 109 chr3L 12491704 intergenic CG10657 -,CR45682 + chr3L 12491758 intergenic CG10657 -,CR45682 + chr3L 12491813 intergenic CG10657 -,CR45682 + chr3L_5_12490001 chr3L_12490001 RAL-732 990 chr3L 12594943 12594956 chr3L 12595017 12595027 8 74 6.0 4.0 5.0 1.3 84 chr3L 12594943 exon ara + chr3L 12594985 exon ara + chr3L 12595027 exon ara + chr3L_8_12590001 chr3L_12590001 RAL-732 991 chr3L 11777678 11777678 chr3L 12638619 12638625 9 860944 14.0 14.5 14.2 0.6 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_9_12205001 chr3L_12205001 RAL-732 992 chr3L 12647950 12647974 chr3L 12648024 12648050 6 76 3.5 1.0 2.2 1.9 100 chr3L 12647950 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648050 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-732 993 chr3L 12868029 12868058 chr3L 12868115 12868144 9 85 2.5 1.0 1.8 3.2 115 chr3L 12868029 intergenic not near genes chr3L 12868086 intergenic not near genes chr3L 12868144 intergenic not near genes chr3L_9_12865001 chr3L_12865001 RAL-732 994 chr3L 12874925 12874961 chr3L 12877217 12877253 jockey 6 2292 2.5 1.0 1.8 2.1 2328 chr3L 12874925 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-732 995 chr3L 12919278 12919305 chr3L 12924749 12924778 Rt1c 8 5472 4.5 1.5 3.0 2.0 5500 chr3L 12919278 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-732 996 chr3L 12955128 12955158 chr3L 12955204 12955234 11 76 2.0 1.5 1.8 3.9 106 chr3L 12955128 intergenic CG10752 - chr3L 12955181 intergenic not near genes chr3L 12955234 intergenic not near genes chr3L_11_12955001 chr3L_12955001 RAL-732 997 chr3L 12955429 12955456 chr3L 12955520 12955547 8 91 1.0 2.0 1.5 3.2 118 chr3L 12955429 intergenic not near genes chr3L 12955488 intergenic not near genes chr3L 12955547 intergenic not near genes chr3L_8_12955001 chr3L_12955001 RAL-732 998 chr3L 12957790 12957814 chr3L 12962272 12962296 copia 4 4482 2.0 5.0 3.5 0.9 4506 chr3L 12957790 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962296 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-732 999 chr3L 13007692 13007726 chr3L 13007771 13007805 8 79 1.0 1.0 1.0 4.0 113 chr3L 13007692 exon CG11263 + chr3L 13007748 3` UTR CG11263 + chr3L 13007805 3` UTR CG11263 + chr3L_8_13005001 chr3L_13005001 RAL-732 1000 chr3L 13009862 13009862 chr3L 22908066 22908067 4 9898204 4.5 15.0 9.8 0.4 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_4_17955001 chr3L_17955001 RAL-732 1001 chr3L 13074035 13074072 chr3L 13074168 13074205 12 133 1.0 2.5 1.8 4.3 170 chr3L 13074035 intergenic not near genes chr3L 13074120 intergenic not near genes chr3L 13074205 intergenic not near genes chr3L_12_13070001 chr3L_13070001 RAL-732 1002 chr3L 13137652 13137675 chr3L 13137737 13137763 8 88 3.5 3.5 3.5 1.8 111 chr3L 13137652 intergenic not near genes chr3L 13137708 intergenic not near genes chr3L 13137763 intergenic not near genes chr3L_8_13135001 chr3L_13135001 RAL-732 1003 chr3L 13296524 13296549 chr3L 13296615 13296640 7 91 3.0 2.0 2.5 2.0 116 chr3L 13296524 intergenic Sfp70A4 -,CR45253 + chr3L 13296582 3` UTR Sfp70A4 - chr3L 13296640 3` UTR Sfp70A4 - chr3L_7_13295001 chr3L_13295001 RAL-732 1004 chr3L 13311797 13311817 chr3L 13311874 13311895 4 78 1.5 4.0 2.8 1.1 98 chr3L 13311797 intergenic not near genes chr3L 13311846 intergenic not near genes chr3L 13311895 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-732 1005 chr3L 13317791 13317821 chr3L 13317878 13317911 6 90 2.0 2.0 2.0 2.0 120 chr3L 13317791 intergenic not near genes chr3L 13317851 intergenic not near genes chr3L 13317911 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-732 1006 chr3L 13338633 13338655 chr3L 13338710 13338732 7 77 1.5 2.0 1.8 2.5 99 chr3L 13338633 intergenic not near genes chr3L 13338682 intergenic not near genes chr3L 13338732 intergenic not near genes chr3L_7_13335001 chr3L_13335001 RAL-732 1007 chr3L 13400528 13400546 chr3L 13400604 13400622 8 76 2.5 1.5 2.0 2.7 94 chr3L 13400528 intron sens - chr3L 13400575 intron sens - chr3L 13400622 intron sens - chr3L_8_13400001 chr3L_13400001 RAL-732 1008 chr3L 13406270 13406295 chr3L 13406353 13406378 5 83 2.5 2.0 2.2 1.6 108 chr3L 13406270 intergenic not near genes chr3L 13406324 intergenic not near genes chr3L 13406378 intergenic not near genes chr3L_5_13405001 chr3L_13405001 RAL-732 1009 chr3L 13408260 13408269 chr3L 13408357 13408366 5 97 1.0 0.5 0.8 2.8 106 chr3L 13408260 intergenic not near genes chr3L 13408313 intergenic not near genes chr3L 13408366 intergenic not near genes chr3L_5_13405001 chr3L_13405001 RAL-732 1010 chr3L 13525154 13525185 chr3L 13532950 13532981 roo 9 7796 4.0 3.0 3.5 2.0 7827 chr3L 13525154 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-732 1011 chr3L 13596036 13596052 chr3L 13596151 13596167 6 115 5.5 0.0 2.8 1.6 131 chr3L 13596036 intron bru-3 - chr3L 13596102 intron bru-3 - chr3L 13596167 intron bru-3 - chr3L_6_13595001 chr3L_13595001 RAL-732 1012 chr3L 13626694 13626717 chr3L 13626778 13626800 9 84 2.0 2.5 2.2 2.8 106 chr3L 13626694 intron bru-3 - chr3L 13626747 intron bru-3 - chr3L 13626800 intron bru-3 - chr3L_9_13625001 chr3L_13625001 RAL-732 1013 chr3L 13633417 13633440 chr3L 13633771 13633794 8 354 1.5 2.0 1.8 2.9 377 chr3L 13633417 intron bru-3 - chr3L 13633606 intron bru-3 - chr3L 13633794 intron bru-3 - chr3L_8_13630001 chr3L_13630001 RAL-732 1014 chr3L 13648888 13648922 chr3L 13648977 13649012 13 90 2.5 4.0 3.2 3.1 124 chr3L 13648888 intron bru-3 - chr3L 13648950 intron bru-3 - chr3L 13649012 intron bru-3 - chr3L_13_13645001 chr3L_13645001 RAL-732 1015 chr3L 13677545 13677562 chr3L 13677622 13677637 6 77 2.0 2.5 2.2 1.9 92 chr3L 13677545 intron bru-3 - chr3L 13677591 intron bru-3 - chr3L 13677637 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-732 1016 chr3L 13736741 13736762 chr3L 13737189 13737209 5 448 3.5 3.5 3.5 1.1 468 chr3L 13736741 intron bru-3 - chr3L 13736975 intron bru-3 - chr3L 13737209 intron bru-3 - chr3L_5_13735001 chr3L_13735001 RAL-732 1017 chr3L 13804546 13804574 chr3L 13822832 13822859 roo 9 18286 2.5 5.0 3.8 1.9 18313 chr3L 13804546 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822859 intergenic not near genes chr3L_9_13810001 chr3L_13810001 RAL-732 1018 chr3L 13833974 13834008 chr3L 13834086 13834122 9 112 1.0 1.5 1.2 4.1 148 chr3L 13833974 intergenic not near genes chr3L 13834048 intergenic not near genes chr3L 13834122 intergenic not near genes chr3L_9_13830001 chr3L_13830001 RAL-732 1019 chr3L 13862415 13862434 chr3L 13862778 13862798 9 363 3.5 3.5 3.5 2.0 383 chr3L 13862415 intron CG8745 - chr3L 13862606 intron CG8745 - chr3L 13862798 intron CG8745 - chr3L_9_13860001 chr3L_13860001 RAL-732 1020 chr3L 14107264 14107295 chr3L 14107341 14107372 5 77 4.0 2.0 3.0 1.2 108 chr3L 14107264 intron Sox21a - chr3L 14107318 intron Sox21a - chr3L 14107372 intron Sox21a - chr3L_5_14105001 chr3L_14105001 RAL-732 1021 chr3L 14194725 14194742 chr3L 14194801 14194818 5 76 1.5 1.5 1.5 2.0 93 chr3L 14194725 intron nuf + chr3L 14194772 intron nuf + chr3L 14194818 intron nuf + chr3L_5_14190001 chr3L_14190001 RAL-732 1022 chr3L 14196418 14196441 chr3L 14196503 14196526 4 85 2.0 4.0 3.0 1.0 108 chr3L 14196418 intron nuf + chr3L 14196472 intron nuf + chr3L 14196526 intron nuf + chr3L_4_14195001 chr3L_14195001 RAL-732 1023 chr3L 14267384 14267391 chr3L 14271819 14271831 F-element 6 4439 2.5 4.0 3.2 1.4 4447 chr3L 14267384 intergenic not near genes chr3L 14269608 intergenic not near genes chr3L 14271831 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-732 1024 chr3L 14282600 14282606 chr3L 14282676 14282686 4 79 0.0 8.5 4.2 0.8 86 chr3L 14282600 intron fz + chr3L 14282643 intron fz + chr3L 14282686 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-732 1025 chr3L 14286660 14286671 chr3L 14286737 14286749 4 78 1.5 1.5 1.5 1.6 89 chr3L 14286660 intron fz + chr3L 14286704 intron fz + chr3L 14286749 intron fz + chr3L_4_14285001 chr3L_14285001 RAL-732 1026 chr3L 14295989 14296007 chr3L 14296475 14296493 roo 5 486 3.0 4.0 3.5 1.1 504 chr3L 14295989 intron fz + chr3L 14296241 intron fz + chr3L 14296493 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-732 1027 chr3L 14312025 14312049 chr3L 14316838 14316863 X-element 5 4814 1.0 2.0 1.5 2.0 4838 chr3L 14312025 exon fz + chr3L 14314444 intron fz + chr3L 14316863 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-732 1028 chr3L 14318784 14318792 chr3L 14318862 14318870 4 78 0.5 1.0 0.8 2.2 86 chr3L 14318784 intron fz + chr3L 14318827 intron fz + chr3L 14318870 intron fz + chr3L_4_14315001 chr3L_14315001 RAL-732 1029 chr3L 14320632 14320660 chr3L 14320770 14320798 6 138 1.5 0.5 1.0 3.0 166 chr3L 14320632 intron fz + chr3L 14320715 intron fz + chr3L 14320798 intron fz + chr3L_6_14320001 chr3L_14320001 RAL-732 1030 chr3L 14348906 14348933 chr3L 14348992 14349018 10 86 0.0 2.0 1.0 5.0 112 chr3L 14348906 intron fz + chr3L 14348962 intron fz + chr3L 14349018 intron fz + chr3L_10_14345001 chr3L_14345001 RAL-732 1031 chr3L 14467128 14467154 chr3L 14467216 14467242 4 88 2.5 3.0 2.8 1.1 114 chr3L 14467128 intron bbg - chr3L 14467185 intron bbg - chr3L 14467242 intron bbg - chr3L_4_14465001 chr3L_14465001 RAL-732 1032 chr3L 14468466 14468475 chr3L 14473671 14473681 copia 4 5206 2.5 3.5 3.0 1.0 5215 chr3L 14468466 intron bbg - chr3L 14471074 intron bbg - chr3L 14473681 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-732 1033 chr3L 14532626 14532650 chr3L 14533048 14533072 10 422 2.5 3.5 3.0 2.5 446 chr3L 14532626 intron bbg - chr3L 14532849 intron bbg - chr3L 14533072 intron bbg - chr3L_10_14530001 chr3L_14530001 RAL-732 1034 chr3L 14662175 14662194 chr3L 14662265 14662286 7 92 1.0 3.0 2.0 2.3 111 chr3L 14662175 intron dlp + chr3L 14662230 intron dlp + chr3L 14662286 intron dlp + chr3L_7_14660001 chr3L_14660001 RAL-732 1035 chr3L 14721182 14721209 chr3L 14723025 14723052 Rt1c 8 1842 3.5 2.5 3.0 2.0 1870 chr3L 14721182 intron ome + chr3L 14722117 intron ome + chr3L 14723052 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-732 1036 chr3L 14725599 14725625 chr3L 14728593 14728619 Doc 5 2994 1.0 2.0 1.5 2.0 3020 chr3L 14725599 intron ome + chr3L 14727109 intron ome + chr3L 14728619 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-732 1037 chr3L 14918776 14918801 chr3L 14918856 14918881 11 80 5.0 2.0 3.5 2.4 105 chr3L 14918776 intron DCX-EMAP + chr3L 14918828 intron DCX-EMAP + chr3L 14918881 intron DCX-EMAP + chr3L_11_14915001 chr3L_14915001 RAL-732 1038 chr3L 14922107 14922128 chr3L 14922215 14922236 8 108 1.5 1.0 1.2 3.6 129 chr3L 14922107 intron DCX-EMAP + chr3L 14922172 intron DCX-EMAP + chr3L 14922236 intron DCX-EMAP + chr3L_8_14920001 chr3L_14920001 RAL-732 1039 chr3L 15037423 15037443 chr3L 15037508 15037529 7 85 2.5 0.0 1.2 3.2 106 chr3L 15037423 intron Sytbeta - chr3L 15037476 intron Sytbeta - chr3L 15037529 intron Sytbeta - chr3L_7_15035001 chr3L_15035001 RAL-732 1040 chr3L 15063700 15063703 chr3L 22908066 22908067 6 7844365 9.5 15.0 12.2 0.5 7844367 chr3L 15063700 intron Sytbeta - chr3L 18985884 intergenic CG11619 -,CG14075 + chr3L 22908067 intergenic not near genes chr3L_6_18985001 chr3L_18985001 RAL-732 1041 chr3L 15069791 15069805 chr3L 15069941 15069952 7 149 11.5 6.0 8.8 0.7 161 chr3L 15069791 exon cp309 - chr3L 15069872 intron cp309 - chr3L 15069952 exon cp309 - chr3L_7_15065001 chr3L_15065001 RAL-732 1042 chr3L 15085064 15085082 chr3L 15086230 15086248 1360 5 1166 2.0 3.0 2.5 1.4 1184 chr3L 15085064 intron cp309 - chr3L 15085656 intron cp309 - chr3L 15086248 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-732 1043 chr3L 15231389 15231414 chr3L 15231481 15231507 8 92 2.0 0.5 1.2 3.6 118 chr3L 15231389 intergenic not near genes chr3L 15231448 intergenic not near genes chr3L 15231507 intergenic not near genes chr3L_8_15230001 chr3L_15230001 RAL-732 1044 chr3L 15261719 15261722 chr3L 22908066 22908067 5 7646345 3.5 15.0 9.2 0.5 7646348 chr3L 15261719 intergenic not near genes chr3L 19084893 intron Mkp3 - chr3L 22908067 intergenic not near genes chr3L_5_19080001 chr3L_19080001 RAL-732 1045 chr3L 15265775 15265794 chr3L 15265855 15265873 6 80 1.5 1.5 1.5 2.4 98 chr3L 15265775 intergenic not near genes chr3L 15265824 intergenic not near genes chr3L 15265873 intergenic not near genes chr3L_6_15265001 chr3L_15265001 RAL-732 1046 chr3L 15295773 15295801 chr3L 15298614 15298644 gypsy5 5 2843 2.0 1.0 1.5 2.0 2871 chr3L 15295773 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298644 intergenic Best4 + chr3L_5_15295001 chr3L_15295001 RAL-732 1047 chr3L 15320880 15320903 chr3L 15320955 15320979 5 75 2.0 2.5 2.2 1.6 99 chr3L 15320880 intergenic not near genes chr3L 15320930 intergenic not near genes chr3L 15320979 intergenic not near genes chr3L_5_15320001 chr3L_15320001 RAL-732 1048 chr3L 15381158 15381182 chr3L 15381471 15381495 6 313 0.0 0.5 0.2 5.0 337 chr3L 15381158 intergenic not near genes chr3L 15381326 intergenic not near genes chr3L 15381495 intergenic not near genes chr3L_6_15380001 chr3L_15380001 RAL-732 1049 chr3L 15406020 15406056 chr3L 15406103 15406139 5 83 2.0 1.5 1.8 1.8 119 chr3L 15406020 intergenic not near genes chr3L 15406080 intergenic not near genes chr3L 15406139 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-732 1050 chr3L 15466043 15466136 chr3L 15466125 15466232 9 93 0.0 0.0 0.0 9.0 189 chr3L 15466043 intergenic not near genes chr3L 15466138 intergenic not near genes chr3L 15466232 intergenic not near genes chr3L_9_15465001 chr3L_15465001 RAL-732 1051 chr3L 15482417 15482444 chr3L 15482509 15482536 6 92 2.0 0.0 1.0 3.0 119 chr3L 15482417 intergenic not near genes chr3L 15482476 intergenic not near genes chr3L 15482536 intergenic not near genes chr3L_6_15480001 chr3L_15480001 RAL-732 1052 chr3L 15501509 15501547 chr3L 15501630 15501668 11 120 2.0 2.0 2.0 3.7 159 chr3L 15501509 intron CG7272 + chr3L 15501588 intron CG7272 + chr3L 15501668 intron CG7272 + chr3L_11_15500001 chr3L_15500001 RAL-732 1053 chr3L 15541627 15541650 chr3L 15541718 15541741 4 91 2.5 2.0 2.2 1.2 114 chr3L 15541627 intron CrebA + chr3L 15541684 intron CrebA + chr3L 15541741 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-732 1054 chr3L 15604014 15604040 chr3L 15604300 15604327 8 287 2.5 1.0 1.8 2.9 313 chr3L 15604014 intron RhoGAP71E + chr3L 15604170 intron RhoGAP71E + chr3L 15604327 intron RhoGAP71E + chr3L_8_15600001 chr3L_15600001 RAL-732 1055 chr3L 15604360 15604391 chr3L 15604438 15604469 5 78 1.0 2.5 1.8 1.8 109 chr3L 15604360 intron RhoGAP71E + chr3L 15604414 intron RhoGAP71E + chr3L 15604469 intron RhoGAP71E + chr3L_5_15600001 chr3L_15600001 RAL-732 1056 chr3L 15633186 15633215 chr3L 15633266 15633295 4 80 0.0 0.0 0.0 4.0 109 chr3L 15633186 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633295 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-732 1057 chr3L 15641245 15641268 chr3L 15641325 15641348 8 80 0.0 1.0 0.5 5.3 103 chr3L 15641245 intron comm3 - chr3L 15641296 intron comm3 - chr3L 15641348 intron comm3 - chr3L_8_15640001 chr3L_15640001 RAL-732 1058 chr3L 15679176 15679199 chr3L 15679508 15679531 6 332 3.5 2.0 2.8 1.6 355 chr3L 15679176 intergenic not near genes chr3L 15679354 intergenic CG7304 + chr3L 15679531 intergenic CG7304 + chr3L_6_15675001 chr3L_15675001 RAL-732 1059 chr3L 15899221 15899263 chr3L 15899788 15899828 jockey 6 566 1.0 1.5 1.2 2.7 607 chr3L 15899221 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899828 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-732 1060 chr3L 15939851 15939879 chr3L 15939927 15939955 6 76 2.0 2.0 2.0 2.0 104 chr3L 15939851 intron Pka-C3 - chr3L 15939903 intron Pka-C3 - chr3L 15939955 intron Pka-C3 - chr3L_6_15935001 chr3L_15935001 RAL-732 1061 chr3L 15942017 15942040 chr3L 15942294 15942318 7 278 0.5 1.0 0.8 3.9 301 chr3L 15942017 intron Pka-C3 - chr3L 15942168 intron Pka-C3 - chr3L 15942318 intron Pka-C3 - chr3L_7_15940001 chr3L_15940001 RAL-732 1062 chr3L 16158812 16158835 chr3L 16158897 16158920 5 85 0.0 1.0 0.5 3.3 108 chr3L 16158812 intron CG5151 - chr3L 16158866 intron CG5151 - chr3L 16158920 intron CG5151 - chr3L_5_16155001 chr3L_16155001 RAL-732 1063 chr3L 16184103 16184141 chr3L 16188922 16188960 X-element 9 4819 1.0 3.0 2.0 3.0 4857 chr3L 16184103 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188960 intergenic not near genes chr3L_9_16185001 chr3L_16185001 RAL-732 1064 chr3L 16194336 16194363 chr3L 16194423 16194453 5 89 0.5 4.0 2.2 1.6 117 chr3L 16194336 intergenic not near genes chr3L 16194394 intergenic not near genes chr3L 16194453 intergenic not near genes chr3L_5_16190001 chr3L_16190001 RAL-732 1065 chr3L 16322822 16322860 chr3L 16322912 16322949 10 90 0.5 4.0 2.2 3.1 127 chr3L 16322822 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322949 intergenic not near genes chr3L_10_16320001 chr3L_16320001 RAL-732 1066 chr3L 16340274 16340288 chr3L 16340398 16340412 8 124 4.0 4.0 4.0 1.6 138 chr3L 16340274 intron CG4998 + chr3L 16340343 intron CG4998 + chr3L 16340412 intron CG4998 + chr3L_8_16340001 chr3L_16340001 RAL-732 1067 chr3L 16443847 16443878 chr3L 16446187 16446218 Doc 8 2340 2.5 2.0 2.2 2.5 2371 chr3L 16443847 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446218 intron,intron CG33158 +,dsx-c73A - chr3L_8_16445001 chr3L_16445001 RAL-732 1068 chr3L 16457528 16457542 chr3L 16457623 16457637 4 95 1.0 1.0 1.0 2.0 109 chr3L 16457528 intron CG33158 + chr3L 16457582 intron CG33158 + chr3L 16457637 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-732 1069 chr3L 16493976 16494010 chr3L 16494493 16494527 jockey 11 517 3.0 2.5 2.8 2.9 551 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-732 1070 chr3L 16540052 16540087 chr3L 16540140 16540174 11 88 2.0 2.5 2.2 3.4 122 chr3L 16540052 intron CG43373 - chr3L 16540113 intron CG43373 - chr3L 16540174 intron CG43373 - chr3L_11_16540001 chr3L_16540001 RAL-732 1071 chr3L 16563236 16563258 chr3L 16563317 16563338 6 81 0.0 0.0 0.0 6.0 102 chr3L 16563236 intergenic Mipp1 - chr3L 16563287 intergenic Mipp1 - chr3L 16563338 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-732 1072 chr3L 16616521 16616543 chr3L 16621849 16621871 297 4 5328 1.0 3.0 2.0 1.3 5350 chr3L 16616521 3` UTR Abl - chr3L 16619196 3` UTR Abl - chr3L 16621871 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-732 1073 chr3L 16757645 16757669 chr3L 16757735 16757759 6 89 0.5 4.5 2.5 1.7 114 chr3L 16757645 intergenic not near genes chr3L 16757702 intergenic not near genes chr3L 16757759 intergenic not near genes chr3L_6_16755001 chr3L_16755001 RAL-732 1074 chr3L 16772492 16772513 chr3L 16772582 16772603 9 90 5.0 1.5 3.2 2.1 111 chr3L 16772492 intron Nrt + chr3L 16772548 intron Nrt + chr3L 16772603 intron Nrt + chr3L_9_16770001 chr3L_16770001 RAL-732 1075 chr3L 16808042 16808069 chr3L 16808118 16808145 7 76 1.5 0.0 0.8 3.9 103 chr3L 16808042 intron nudC + chr3L 16808094 intron nudC + chr3L 16808145 intron nudC + chr3L_7_16805001 chr3L_16805001 RAL-732 1076 chr3L 16817876 16817898 chr3L 16818016 16818035 4 139 3.5 3.0 3.2 1.0 159 chr3L 16817876 intron,intron nudC +,CG13024 - chr3L 16817956 intron,intron nudC +,CG13024 - chr3L 16818035 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-732 1077 chr3L 16839003 16839018 chr3L 16839211 16839227 5 209 3.0 1.5 2.2 1.6 224 chr3L 16839003 intergenic not near genes chr3L 16839115 intergenic not near genes chr3L 16839227 intergenic not near genes chr3L_5_16835001 chr3L_16835001 RAL-732 1078 chr3L 16945728 16945758 chr3L 16954880 16954911 roo 12 9153 4.0 3.5 3.8 2.5 9183 chr3L 16945728 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954911 5` UTR Nc73EF + chr3L_12_16950001 chr3L_16950001 RAL-732 1079 chr3L 17026791 17026824 chr3L 17026872 17026905 12 81 3.0 2.0 2.5 3.4 114 chr3L 17026791 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026905 3` UTR Fit2 + chr3L_12_17025001 chr3L_17025001 RAL-732 1080 chr3L 17034932 17034950 chr3L 17035120 17035138 G2 4 188 1.5 1.0 1.2 1.8 206 chr3L 17034932 intergenic not near genes chr3L 17035035 intergenic not near genes chr3L 17035138 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-732 1081 chr3L 17085005 17085036 chr3L 17094154 17094185 roo 9 9149 3.0 4.0 3.5 2.0 9180 chr3L 17085005 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-732 1082 chr3L 17120664 17120685 chr3L 17120740 17120761 8 76 0.5 3.0 1.8 2.9 97 chr3L 17120664 intron Rbp6 - chr3L 17120712 intron Rbp6 - chr3L 17120761 intron Rbp6 - chr3L_8_17120001 chr3L_17120001 RAL-732 1083 chr3L 17148403 17148438 chr3L 17148514 17148549 12 111 2.0 1.5 1.8 4.3 146 chr3L 17148403 intron Rbp6 - chr3L 17148476 intron Rbp6 - chr3L 17148549 intron Rbp6 - chr3L_12_17145001 chr3L_17145001 RAL-732 1084 chr3L 17149168 17149182 chr3L 17149249 17149263 6 81 3.0 0.0 1.5 2.4 95 chr3L 17149168 intron Rbp6 - chr3L 17149216 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-732 1085 chr3L 17164379 17164398 chr3L 17164520 17164539 7 141 1.0 0.0 0.5 4.7 160 chr3L 17164379 intron Rbp6 - chr3L 17164459 intron Rbp6 - chr3L 17164539 intron Rbp6 - chr3L_7_17160001 chr3L_17160001 RAL-732 1086 chr3L 17272242 17272265 chr3L 17272375 17272398 6 133 2.5 2.5 2.5 1.7 156 chr3L 17272242 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272398 intergenic not near genes chr3L_6_17270001 chr3L_17270001 RAL-732 1087 chr3L 17316456 17316479 chr3L 17316566 17316591 7 111 2.5 2.0 2.2 2.2 135 chr3L 17316456 intergenic not near genes chr3L 17316524 intergenic not near genes chr3L 17316591 intergenic not near genes chr3L_7_17315001 chr3L_17315001 RAL-732 1088 chr3L 17388137 17388162 chr3L 17388219 17388244 9 82 2.5 2.0 2.2 2.8 107 chr3L 17388137 intron CG13731 - chr3L 17388190 intron CG13731 - chr3L 17388244 intron CG13731 - chr3L_9_17385001 chr3L_17385001 RAL-732 1089 chr3L 17510735 17510764 chr3L 17510819 17510848 8 84 4.5 4.0 4.2 1.5 113 chr3L 17510735 exon Oatp74D + chr3L 17510792 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_8_17510001 chr3L_17510001 RAL-732 1090 chr3L 17516978 17517004 chr3L 17524536 17524562 412 7 7557 1.0 1.5 1.2 3.2 7584 chr3L 17516978 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524562 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-732 1091 chr3L 17730858 17730880 chr3L 17738188 17738210 mdg1 6 7330 1.5 2.5 2.0 2.0 7352 chr3L 17730858 intron Ccn + chr3L 17734534 intron Ccn + chr3L 17738210 intron Ccn + chr3L_6_17730001 chr3L_17730001 RAL-732 1092 chr3L 17748490 17748517 chr3L 17748570 17748598 7 81 8.0 5.0 6.5 0.9 108 chr3L 17748490 3` UTR Ccn + chr3L 17748544 3` UTR Ccn + chr3L 17748598 3` UTR Ccn + chr3L_7_17745001 chr3L_17745001 RAL-732 1093 chr3L 17790216 17790483 chr3L 17790328 17790624 9 125 3.0 7.5 5.2 1.5 408 chr3L 17790216 intergenic not near genes chr3L 17790420 intergenic not near genes chr3L 17790624 intergenic CG42815 - chr3L_9_17790001 chr3L_17790001 RAL-732 1094 chr3L 17790604 17790632 chr3L 17790868 17790897 4 265 0.5 1.0 0.8 2.2 293 chr3L 17790604 intergenic CG42815 - chr3L 17790750 intergenic CG42815 - chr3L 17790897 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-732 1095 chr3L 18047714 18047740 chr3L 18056771 18056797 roo 5 9057 2.0 2.0 2.0 1.7 9083 chr3L 18047714 intron Eip75B - chr3L 18052256 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_5_18050001 chr3L_18050001 RAL-732 1096 chr3L 18092782 18092804 chr3L 18092897 18092919 7 115 2.0 0.0 1.0 3.5 137 chr3L 18092782 intron CG13698 - chr3L 18092850 intron CG13698 - chr3L 18092919 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-732 1097 chr3L 18118216 18118241 chr3L 18118294 18118318 8 78 0.0 2.5 1.2 3.6 102 chr3L 18118216 3` UTR,intron CG32195 +,CG7341 + chr3L 18118267 3` UTR,intron CG32195 +,CG7341 + chr3L 18118318 3` UTR,intron CG32195 +,CG7341 + chr3L_8_18115001 chr3L_18115001 RAL-732 1098 chr3L 18150320 18150343 chr3L 18150416 18150440 5 97 2.5 4.0 3.2 1.2 120 chr3L 18150320 intron CG7330 + chr3L 18150380 intron CG7330 + chr3L 18150440 intron CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-732 1099 chr3L 18258860 18258875 chr3L 18258986 18259001 5 126 4.5 6.5 5.5 0.8 141 chr3L 18258860 intergenic not near genes chr3L 18258930 intergenic not near genes chr3L 18259001 intergenic not near genes chr3L_5_18255001 chr3L_18255001 RAL-732 1100 chr3L 18267519 18267538 chr3L 18267762 18267780 4 242 5.5 6.5 6.0 0.6 261 chr3L 18267519 intergenic not near genes chr3L 18267650 intergenic not near genes chr3L 18267780 intergenic not near genes chr3L_4_18265001 chr3L_18265001 RAL-732 1101 chr3L 18267842 18267870 chr3L 18267918 18267947 9 77 1.0 1.5 1.2 4.1 105 chr3L 18267842 intergenic not near genes chr3L 18267894 intergenic not near genes chr3L 18267947 intergenic not near genes chr3L_9_18265001 chr3L_18265001 RAL-732 1102 chr3L 18383456 18383460 chr3L 18383543 18383547 4 87 9.0 9.0 9.0 0.4 91 chr3L 18383456 intergenic not near genes chr3L 18383502 intergenic not near genes chr3L 18383547 intergenic not near genes chr3L_4_18380001 chr3L_18380001 RAL-732 1103 chr3L 18408736 18408756 chr3L 18408821 18408842 5 86 3.5 1.0 2.2 1.6 106 chr3L 18408736 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408842 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-732 1104 chr3L 9013689 9013694 chr3L 18417066 18417066 4 9403374 21.5 13.5 17.5 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-732 1105 chr3L 18506138 18506160 chr3L 18509600 18509623 F-element 7 3463 3.0 2.0 2.5 2.0 3485 chr3L 18506138 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509623 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-732 1106 chr3L 18528644 18528657 chr3L 18537805 18537818 roo 8 9161 2.0 2.5 2.2 2.5 9174 chr3L 18528644 intergenic not near genes chr3L 18533231 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_8_18530001 chr3L_18530001 RAL-732 1107 chr3L 18567026 18567047 chr3L 18567112 18567133 4 86 3.5 5.0 4.2 0.8 107 chr3L 18567026 intron AstC-R1 + chr3L 18567080 intron AstC-R1 + chr3L 18567133 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-732 1108 chr3L 18579565 18579584 chr3L 18579692 18579712 4 128 4.0 4.5 4.2 0.8 147 chr3L 18579565 intergenic not near genes chr3L 18579638 intergenic not near genes chr3L 18579712 intergenic not near genes chr3L_4_18575001 chr3L_18575001 RAL-732 1109 chr3L 18593946 18593971 chr3L 18595926 18595951 Doc 7 1980 3.5 0.0 1.8 2.5 2005 chr3L 18593946 intergenic term - chr3L 18594948 intergenic not near genes chr3L 18595951 intergenic CR45389 + chr3L_7_18590001 chr3L_18590001 RAL-732 1110 chr3L 18606747 18606773 chr3L 18606945 18606971 6 197 11.0 5.5 8.2 0.7 224 chr3L 18606747 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606859 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606971 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_6_18605001 chr3L_18605001 RAL-732 1111 chr3L 18638578 18638605 chr3L 18638672 18638699 7 94 1.5 0.5 1.0 3.5 121 chr3L 18638578 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638699 intron MYPT-75D + chr3L_7_18635001 chr3L_18635001 RAL-732 1112 chr3L 18656182 18656190 chr3L 18656267 18656275 5 85 5.5 5.5 5.5 0.8 93 chr3L 18656182 intron MYPT-75D + chr3L 18656228 intron MYPT-75D + chr3L 18656275 intron MYPT-75D + chr3L_5_18655001 chr3L_18655001 RAL-732 1113 chr3L 18725280 18725294 chr3L 18725586 18725600 4 306 2.0 5.0 3.5 0.9 320 chr3L 18725280 intergenic not near genes chr3L 18725440 intergenic not near genes chr3L 18725600 intergenic not near genes chr3L_4_18725001 chr3L_18725001 RAL-732 1114 chr3L 18833783 18833814 chr3L 18834947 18834978 1360 5 1164 3.0 3.0 3.0 1.2 1195 chr3L 18833783 intron Indy - chr3L 18834380 intron Indy - chr3L 18834978 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-732 1115 chr3L 18839736 18839765 chr3L 18839819 18839847 7 83 0.5 4.0 2.2 2.2 111 chr3L 18839736 intron Indy - chr3L 18839792 intron Indy - chr3L 18839847 intron Indy - chr3L_7_18835001 chr3L_18835001 RAL-732 1116 chr3L 18843865 18843883 chr3L 18843963 18843981 4 98 4.5 2.0 3.2 1.0 116 chr3L 18843865 intron Indy - chr3L 18843923 intron Indy - chr3L 18843981 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-732 1117 chr3L 18933629 18933660 chr3L 18933723 18933753 4 94 2.5 2.0 2.2 1.2 124 chr3L 18933629 intron CG32204 - chr3L 18933691 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-732 1118 chr3L 18969551 18969631 chr3L 18969627 18969727 5 80 4.0 3.5 3.8 1.0 176 chr3L 18969551 intergenic not near genes chr3L 18969639 intergenic not near genes chr3L 18969727 intergenic not near genes chr3L_5_18965001 chr3L_18965001 RAL-732 1119 chr3L 19008840 19008871 chr3L 19009177 19009209 jockey 8 338 1.5 2.0 1.8 2.9 369 chr3L 19008840 intron nkd - chr3L 19009024 intron nkd - chr3L 19009209 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-732 1120 chr3L 19025932 19025965 chr3L 19026016 19026049 6 84 11.5 7.5 9.5 0.6 117 chr3L 19025932 intron nkd - chr3L 19025990 intron nkd - chr3L 19026049 intron nkd - chr3L_6_19025001 chr3L_19025001 RAL-732 1121 chr3L 19082036 19082064 chr3L 19082138 19082166 4 102 6.5 8.0 7.2 0.5 130 chr3L 19082036 intron Mkp3 - chr3L 19082101 intron Mkp3 - chr3L 19082166 intron Mkp3 - chr3L_4_19080001 chr3L_19080001 RAL-732 1122 chr3L 19089878 19089901 chr3L 19089969 19089992 5 90 8.5 7.5 8.0 0.6 114 chr3L 19089878 intergenic not near genes chr3L 19089935 intergenic not near genes chr3L 19089992 intergenic not near genes chr3L_5_19085001 chr3L_19085001 RAL-732 1123 chr3L 19097560 19097575 chr3L 19098103 19098119 6 544 14.5 11.5 13.0 0.4 559 chr3L 19097560 exon CG10424 - chr3L 19097840 intergenic CG10424 -,CG14079 + chr3L 19098119 5` UTR CG14079 + chr3L_6_19095001 chr3L_19095001 RAL-732 1124 chr3L 19115640 19115671 chr3L 19115820 19115851 BS 6 180 1.5 2.0 1.8 2.1 211 chr3L 19115640 intron CG14082 - chr3L 19115746 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-732 1125 chr3L 19117044 19117076 chr3L 19124491 19124523 mdg1 7 7447 2.5 1.0 1.8 2.5 7479 chr3L 19117044 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-732 1126 chr3L 19133675 19133687 chr3L 19133759 19133771 5 84 3.5 5.0 4.2 1.0 96 chr3L 19133675 intron CG14082 - chr3L 19133723 intron CG14082 - chr3L 19133771 intron CG14082 - chr3L_5_19130001 chr3L_19130001 RAL-732 1127 chr3L 19182384 19182412 chr3L 19182465 19182493 6 81 4.0 4.0 4.0 1.2 109 chr3L 19182384 intron fz2 - chr3L 19182438 intron fz2 - chr3L 19182493 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-732 1128 chr3L 19208059 19208083 chr3L 19209433 19209457 Doc 7 1373 3.5 1.5 2.5 2.0 1398 chr3L 19208059 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209457 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-732 1129 chr3L 19220633 19220634 chr3L 22908066 22908067 5 3687433 10.0 15.0 12.5 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-732 1130 chr3L 19269817 19269849 chr3L 19270021 19270053 8 204 10.5 9.5 10.0 0.7 236 chr3L 19269817 intron,exon CG14085 +,CG14088 - chr3L 19269935 intron,exon CG14085 +,CG14088 - chr3L 19270053 intron,exon CG14085 +,CG14088 - chr3L_8_19265001 chr3L_19265001 RAL-732 1131 chr3L 19335752 19335767 chr3L 19335839 19335854 4 87 6.0 9.5 7.8 0.5 102 chr3L 19335752 intron pip - chr3L 19335803 intron pip - chr3L 19335854 intron pip - chr3L_4_19335001 chr3L_19335001 RAL-732 1132 chr3L 19426751 19426782 chr3L 19426829 19426860 12 78 2.5 3.5 3.0 3.0 109 chr3L 19426751 intergenic not near genes chr3L 19426806 intergenic not near genes chr3L 19426860 intergenic not near genes chr3L_12_19425001 chr3L_19425001 RAL-732 1133 chr3L 19435645 19435675 chr3L 19435733 19435765 9 90 3.0 5.0 4.0 1.8 120 chr3L 19435645 intergenic not near genes chr3L 19435705 intergenic not near genes chr3L 19435765 intergenic not near genes chr3L_9_19435001 chr3L_19435001 RAL-732 1134 chr3L 19676086 19676098 chr3L 19676165 19676177 6 79 5.5 4.0 4.8 1.0 91 chr3L 19676086 intergenic not near genes chr3L 19676132 intergenic not near genes chr3L 19676177 intergenic not near genes chr3L_6_19675001 chr3L_19675001 RAL-732 1135 chr3L 19846613 19846629 chr3L 19846711 19846726 4 98 4.0 4.5 4.2 0.8 113 chr3L 19846613 intron Papss + chr3L 19846670 intron Papss + chr3L 19846726 intron Papss + chr3L_4_19845001 chr3L_19845001 RAL-732 1136 chr3L 19848502 19848533 chr3L 19857692 19857723 roo 6 9190 4.0 1.0 2.5 1.7 9221 chr3L 19848502 intron Papss + chr3L 19853112 intron Papss + chr3L 19857723 intron Papss + chr3L_6_19850001 chr3L_19850001 RAL-732 1137 chr3L 19929205 19929207 chr3L 22908066 22908067 6 2978861 9.0 15.0 12.0 0.5 2978862 chr3L 19929205 intron RhoGDI + chr3L 21418636 intron rgn + chr3L 22908067 intergenic not near genes chr3L_6_21415001 chr3L_21415001 RAL-732 1138 chr3L 20113665 20113691 chr3L 20122922 20122948 roo 8 9257 1.5 2.5 2.0 2.7 9283 chr3L 20113665 intergenic not near genes chr3L 20118306 intergenic not near genes chr3L 20122948 intergenic not near genes chr3L_8_20115001 chr3L_20115001 RAL-732 1139 chr3L 20127899 20127917 chr3L 20127975 20127993 5 76 12.0 8.5 10.2 0.4 94 chr3L 20127899 intergenic not near genes chr3L 20127946 intergenic not near genes chr3L 20127993 intergenic not near genes chr3L_5_20125001 chr3L_20125001 RAL-732 1140 chr3L 20148282 20148305 chr3L 20148372 20148395 7 89 13.0 9.5 11.2 0.6 113 chr3L 20148282 intergenic not near genes chr3L 20148338 intergenic not near genes chr3L 20148395 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-732 1141 chr3L 20257347 20257358 chr3L 20258467 20258478 pogo 6 1120 0.5 6.5 3.5 1.3 1131 chr3L 20257347 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258478 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-732 1142 chr3L 20394519 20394531 chr3L 20394603 20394615 4 84 12.0 11.5 11.8 0.3 96 chr3L 20394519 intergenic not near genes chr3L 20394567 intergenic not near genes chr3L 20394615 intergenic not near genes chr3L_4_20390001 chr3L_20390001 RAL-732 1143 chr3L 20421469 20421487 chr3L 20422226 20422245 5 758 14.5 15.5 15.0 0.3 776 chr3L 20421469 exon zye + chr3L 20421857 exon zye + chr3L 20422245 exon zye + chr3L_5_20420001 chr3L_20420001 RAL-732 1144 chr3L 20443890 20444136 chr3L 20444013 20444223 5 94 2.0 6.5 4.2 1.0 333 chr3L 20443890 intron CG5910 + chr3L 20444056 intron CG5910 + chr3L 20444223 intron CG5910 + chr3L_5_20440001 chr3L_20440001 RAL-732 1145 chr3L 20476753 20476779 chr3L 20484351 20484378 springer 8 7599 1.5 0.0 0.8 4.4 7625 chr3L 20476753 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484378 3` UTR ZnT77C - chr3L_8_20480001 chr3L_20480001 RAL-732 1146 chr3L 20563801 20563817 chr3L 20563886 20563902 4 85 2.5 4.0 3.2 1.0 101 chr3L 20563801 intergenic not near genes chr3L 20563852 intergenic not near genes chr3L 20563902 intergenic not near genes chr3L_4_20560001 chr3L_20560001 RAL-732 1147 chr3L 20590074 20590096 chr3L 20590612 20590634 412 7 538 0.5 2.0 1.2 3.2 560 chr3L 20590074 intergenic not near genes chr3L 20590354 intergenic not near genes chr3L 20590634 intergenic not near genes chr3L_7_20590001 chr3L_20590001 RAL-732 1148 chr3L 20603427 20603455 chr3L 20603518 20603546 6 91 3.5 3.5 3.5 1.3 119 chr3L 20603427 intron knrl - chr3L 20603486 intron knrl - chr3L 20603546 intron knrl - chr3L_6_20600001 chr3L_20600001 RAL-732 1149 chr3L 20624611 20624628 chr3L 20624697 20624714 4 86 9.0 5.5 7.2 0.5 103 chr3L 20624611 intergenic CR44684 - chr3L 20624662 intergenic CR44684 - chr3L 20624714 intergenic CR44684 - chr3L_4_20620001 chr3L_20620001 RAL-732 1150 chr3L 20668456 20668472 chr3L 20668531 20668549 4 76 7.0 8.5 7.8 0.5 93 chr3L 20668456 intergenic not near genes chr3L 20668502 intergenic not near genes chr3L 20668549 intergenic not near genes chr3L_4_20665001 chr3L_20665001 RAL-732 1151 chr3L 20710763 20710793 chr3L 20710840 20710870 5 77 1.0 1.5 1.2 2.3 107 chr3L 20710763 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710870 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-732 1152 chr3L 20733813 20733835 chr3L 20733899 20733921 6 86 3.5 2.0 2.8 1.6 108 chr3L 20733813 intron CG13252 + chr3L 20733867 intron CG13252 + chr3L 20733921 intron CG13252 + chr3L_6_20730001 chr3L_20730001 RAL-732 1153 chr3L 20771563 20771567 chr3L 22908066 22908067 6 2136502 15.5 15.0 15.2 0.4 2136504 chr3L 20771563 5` UTR Pitslre + chr3L 21839815 5` UTR P5CDh1 - chr3L 22908067 intergenic not near genes chr3L_6_21835001 chr3L_21835001 RAL-732 1154 chr3L 20821290 20821308 chr3L 20824901 20824916 NOF 5 3610 3.0 6.0 4.5 0.9 3626 chr3L 20821290 intron Pka-R1 + chr3L 20823103 intron Pka-R1 + chr3L 20824916 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-732 1155 chr3L 20849280 20849296 chr3L 20849359 20849375 4 79 1.0 3.0 2.0 1.3 95 chr3L 20849280 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849375 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-732 1156 chr3L 20864644 20864673 chr3L 20864724 20864754 6 80 5.0 2.5 3.8 1.2 110 chr3L 20864644 intron CG32432 - chr3L 20864699 intron CG32432 - chr3L 20864754 intron CG32432 - chr3L_6_20860001 chr3L_20860001 RAL-732 1157 chr3L 20890912 20890945 chr3L 20891017 20891050 6 105 6.5 9.5 8.0 0.7 138 chr3L 20890912 intergenic not near genes chr3L 20890981 intergenic not near genes chr3L 20891050 intergenic not near genes chr3L_6_20890001 chr3L_20890001 RAL-732 1158 chr3L 20913748 20913781 chr3L 20913830 20913863 9 82 2.5 2.5 2.5 2.6 115 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913863 intergenic CR43930 - chr3L_9_20910001 chr3L_20910001 RAL-732 1159 chr3L 20917101 20917114 chr3L 20917178 20917191 4 77 9.0 5.5 7.2 0.5 90 chr3L 20917101 intergenic not near genes chr3L 20917146 intergenic not near genes chr3L 20917191 intergenic not near genes chr3L_4_20915001 chr3L_20915001 RAL-732 1160 chr3L 20948675 20948695 chr3L 20948766 20948786 6 91 2.5 4.5 3.5 1.3 111 chr3L 20948675 intron fng - chr3L 20948730 intron fng - chr3L 20948786 intron fng - chr3L_6_20945001 chr3L_20945001 RAL-732 1161 chr3L 21014913 21014944 chr3L 21023394 21023423 Tirant 10 8480 3.5 3.0 3.2 2.4 8510 chr3L 21014913 intron skd - chr3L 21019168 intron skd - chr3L 21023423 intron skd - chr3L_10_21015001 chr3L_21015001 RAL-732 1162 chr3L 21082211 21082230 chr3L 21082289 21082308 5 78 2.5 5.5 4.0 1.0 97 chr3L 21082211 intron ko - chr3L 21082260 intron ko - chr3L 21082308 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-732 1163 chr3L 21085590 21085606 chr3L 21085978 21085994 7 388 3.0 5.5 4.2 1.3 404 chr3L 21085590 intron ko - chr3L 21085792 intron ko - chr3L 21085994 intron ko - chr3L_7_21085001 chr3L_21085001 RAL-732 1164 chr3L 21093782 21093813 chr3L 21093894 21093920 6 112 13.5 14.0 13.8 0.4 138 chr3L 21093782 intron ko - chr3L 21093851 intron ko - chr3L 21093920 intron ko - chr3L_6_21090001 chr3L_21090001 RAL-732 1165 chr3L 21125848 21125877 chr3L 21125931 21125960 4 83 4.5 4.0 4.2 0.8 112 chr3L 21125848 intron ko - chr3L 21125904 intron ko - chr3L 21125960 intron ko - chr3L_4_21125001 chr3L_21125001 RAL-732 1166 chr3L 21151867 21151889 chr3L 21156951 21156973 flea 7 5084 2.0 2.5 2.2 2.2 5106 chr3L 21151867 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156973 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-732 1167 chr3L 21301734 21301764 chr3L 21301820 21301850 6 86 10.0 8.5 9.2 0.6 116 chr3L 21301734 5` UTR CR45432 + chr3L 21301792 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301850 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_6_21300001 chr3L_21300001 RAL-732 1168 chr3L 21319541 21319557 chr3L 21319630 21319647 6 89 4.5 5.0 4.8 1.0 106 chr3L 21319541 5` UTR Rab26 + chr3L 21319594 5` UTR Rab26 + chr3L 21319647 5` UTR Rab26 + chr3L_6_21315001 chr3L_21315001 RAL-732 1169 chr3L 21492395 21492409 chr3L 21492479 21492510 7 99 4.0 3.0 3.5 1.6 115 chr3L 21492395 intron CG7202 - chr3L 21492452 intron CG7202 - chr3L 21492510 intron CG7202 - chr3L_7_21490001 chr3L_21490001 RAL-732 1170 chr3L 21498839 21498869 chr3L 21500477 21500507 1360 9 1638 2.0 3.0 2.5 2.6 1668 chr3L 21498839 intron Glg1 - chr3L 21499673 intron Glg1 - chr3L 21500507 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-732 1171 chr3L 21637334 21637358 chr3L 21637421 21637445 5 87 8.5 11.5 10.0 0.5 111 chr3L 21637334 intron CG32444 + chr3L 21637390 intron CG32444 + chr3L 21637445 intron CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-732 1172 chr3L 21650930 21650945 chr3L 21651104 21651118 4 175 4.5 12.0 8.2 0.4 188 chr3L 21650930 intron CG43980 + chr3L 21651024 intron CG43980 + chr3L 21651118 intron CG43980 + chr3L_4_21650001 chr3L_21650001 RAL-732 1173 chr3L 21710324 21710352 chr3L 21710539 21710567 8 215 15.0 16.5 15.8 0.5 243 chr3L 21710324 intergenic not near genes chr3L 21710446 intergenic not near genes chr3L 21710567 intergenic not near genes chr3L_8_21710001 chr3L_21710001 RAL-732 1174 chr3L 21720987 21721007 chr3L 21721074 21721094 7 87 9.0 6.0 7.5 0.8 107 chr3L 21720987 intergenic not near genes chr3L 21721040 intergenic not near genes chr3L 21721094 intergenic not near genes chr3L_7_21720001 chr3L_21720001 RAL-732 1175 chr3L 21735174 21735192 chr3L 21735256 21735274 6 82 5.0 8.0 6.5 0.8 100 chr3L 21735174 intergenic CG14573 + chr3L 21735224 intergenic CG14573 + chr3L 21735274 intergenic CG14573 + chr3L_6_21735001 chr3L_21735001 RAL-732 1176 chr3L 21749324 21749339 chr3L 21754484 21754498 Doc 6 5159 2.5 4.0 3.2 1.4 5174 chr3L 21749324 intron Syn1 - chr3L 21751911 intron Syn1 - chr3L 21754498 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-732 1177 chr3L 21761930 21761952 chr3L 21762021 21762043 6 90 8.0 5.0 6.5 0.8 113 chr3L 21761930 intron Syn1 - chr3L 21761986 intron Syn1 - chr3L 21762043 intron Syn1 - chr3L_6_21760001 chr3L_21760001 RAL-732 1178 chr3L 21784588 21784606 chr3L 21784735 21784753 4 147 0.0 1.0 0.5 2.7 165 chr3L 21784588 intergenic not near genes chr3L 21784670 intergenic not near genes chr3L 21784753 intergenic not near genes chr3L_4_21780001 chr3L_21780001 RAL-732 1179 chr3L 21836728 21836754 chr3L 21836814 21836840 9 85 4.0 1.5 2.8 2.4 112 chr3L 21836728 3` UTR P5CDh1 - chr3L 21836784 3` UTR P5CDh1 - chr3L 21836840 3` UTR P5CDh1 - chr3L_9_21835001 chr3L_21835001 RAL-732 1180 chr3L 21866091 21866092 chr3L 21866177 21866181 4 88 8.5 11.0 9.8 0.4 90 chr3L 21866091 intron mub + chr3L 21866136 intron mub + chr3L 21866181 intron mub + chr3L_4_21865001 chr3L_21865001 RAL-732 1181 chr3L 21868577 21868593 chr3L 21868667 21868683 6 89 5.5 6.0 5.8 0.9 106 chr3L 21868577 intron mub + chr3L 21868630 intron mub + chr3L 21868683 intron mub + chr3L_6_21865001 chr3L_21865001 RAL-732 1182 chr3L 21901029 21901040 chr3L 21901122 21901133 5 93 7.0 7.5 7.2 0.6 104 chr3L 21901029 intron mub + chr3L 21901081 intron mub + chr3L 21901133 intron mub + chr3L_5_21900001 chr3L_21900001 RAL-732 1183 chr3L 21950335 21950353 chr3L 21950412 21950430 8 77 17.5 17.5 17.5 0.4 95 chr3L 21950335 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950430 intron CG7448 + chr3L_8_21950001 chr3L_21950001 RAL-732 1184 chr3L 22006756 22006775 chr3L 22006880 22006899 4 124 6.0 5.0 5.5 0.6 143 chr3L 22006756 intergenic not near genes chr3L 22006828 intergenic not near genes chr3L 22006899 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-732 1185 chr3L 22122172 22122186 chr3L 22122516 22122530 4 344 6.5 3.0 4.8 0.7 358 chr3L 22122172 5` UTR CR45236 + chr3L 22122351 intergenic CR45236 +,CR45235 + chr3L 22122530 intergenic CR45235 +,CR45236 + chr3L_4_22120001 chr3L_22120001 RAL-732 1186 chr3L 22130506 22130517 chr3L 22130652 22130663 4 146 2.5 2.5 2.5 1.1 157 chr3L 22130506 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130663 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-732 1187 chr3L 22137528 22137546 chr3L 22137605 22137623 7 77 1.5 1.5 1.5 2.8 95 chr3L 22137528 intron olf413 + chr3L 22137576 intron olf413 + chr3L 22137623 intron olf413 + chr3L_7_22135001 chr3L_22135001 RAL-732 1188 chr3L 22241294 22241319 chr3L 22241376 22241401 9 81 0.5 3.5 2.0 3.0 107 chr3L 22241294 intron olf413 + chr3L 22241348 intron olf413 + chr3L 22241401 intron olf413 + chr3L_9_22240001 chr3L_22240001 RAL-732 1189 chr3L 22328075 22328084 chr3L 22328174 22328182 4 99 11.0 12.0 11.5 0.3 107 chr3L 22328075 intron Ten-m - chr3L 22328128 intron Ten-m - chr3L 22328182 intron Ten-m - chr3L_4_22325001 chr3L_22325001 RAL-732 1190 chr3L 22333039 22333072 chr3L 22333120 22333142 6 79 8.0 9.0 8.5 0.6 103 chr3L 22333039 intron Ten-m - chr3L 22333090 intron Ten-m - chr3L 22333142 intron Ten-m - chr3L_6_22330001 chr3L_22330001 RAL-732 1191 chr3L 22333437 22333464 chr3L 22333575 22333602 4 138 9.5 10.5 10.0 0.4 165 chr3L 22333437 intron Ten-m - chr3L 22333520 intron Ten-m - chr3L 22333602 intron Ten-m - chr3L_4_22330001 chr3L_22330001 RAL-732 1192 chr3L 22447196 22447228 chr3L 22447287 22447319 7 91 7.5 5.5 6.5 0.9 123 chr3L 22447196 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447319 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-732 1193 chr3L 22488885 22488916 chr3L 22488970 22489001 10 85 6.0 7.5 6.8 1.3 116 chr3L 22488885 intergenic not near genes chr3L 22488943 intergenic not near genes chr3L 22489001 intergenic not near genes chr3L_10_22485001 chr3L_22485001 RAL-732 1194 chr3L 22522700 22522727 chr3L 22522777 22522804 8 77 1.0 4.5 2.8 2.1 104 chr3L 22522700 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522804 intergenic not near genes chr3L_8_22520001 chr3L_22520001 RAL-732 1195 chr3L 22555769 22555803 chr3L 22563239 22563273 blood 7 7470 1.5 0.0 0.8 3.9 7504 chr3L 22555769 intergenic not near genes chr3L 22559521 intergenic not near genes chr3L 22563273 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-732 1196 chr3L 22577628 22577649 chr3L 22582416 22582437 Doc 5 4788 3.5 5.0 4.2 1.0 4809 chr3L 22577628 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-732 1197 chr3L 22617188 22617222 chr3L 22624640 22624674 blood 11 7452 2.5 2.0 2.2 3.4 7486 chr3L 22617188 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_11_22620001 chr3L_22620001 RAL-732 1198 chr3L 22678081 22678102 chr3L 22678174 22678194 5 91 16.5 17.0 16.8 0.3 113 chr3L 22678081 intron CG14457 + chr3L 22678138 intron CG14457 + chr3L 22678194 intron CG14457 + chr3L_5_22675001 chr3L_22675001 RAL-732 1199 chr3L 22726230 22726455 chr3L 22726314 22726540 12 85 4.5 6.5 5.5 1.8 310 chr3L 22726230 3` UTR mael + chr3L 22726385 3` UTR CG14450 - chr3L 22726540 3` UTR CG14450 - chr3L_12_22725001 chr3L_22725001 RAL-732 1200 chr3L 22756402 22756431 chr3L 22756479 22756508 5 77 6.5 5.0 5.8 0.7 106 chr3L 22756402 intron SPoCk + chr3L 22756455 intron SPoCk + chr3L 22756508 intron SPoCk + chr3L_5_22755001 chr3L_22755001 RAL-732 1201 chr3L 22761386 22761414 chr3L 22766820 22766848 Ivk 8 5433 4.0 3.0 3.5 1.8 5462 chr3L 22761386 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_8_22760001 chr3L_22760001 RAL-732 1202 chr3L 22853466 22853723 chr3L 22853553 22853809 8 86 7.5 7.5 7.5 0.9 343 chr3L 22853466 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853638 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_8_22850001 chr3L_22850001 RAL-732 1203 chr3L 22889619 22889649 chr3L 22889696 22889726 8 77 6.5 9.5 8.0 0.9 107 chr3L 22889619 intron slif + chr3L 22889672 intron slif + chr3L 22889726 intron slif + chr3L_8_22885001 chr3L_22885001 RAL-732 1204 chr3L 19220632 19220638 chr3L 22908066 22908066 11 3687432 11.0 15.0 13.0 0.8 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_11_21060001 chr3L_21060001 RAL-732 1205 chr3L 19220633 19220637 chr3L 22908067 22908067 7 3687432 10.0 15.5 12.8 0.5 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-732 1206 chr3L 22989871 22989886 chr3L 22996845 22996859 297 5 6974 0.5 2.5 1.5 2.0 6988 chr3L 22989871 intergenic not near genes chr3L 22993365 intergenic not near genes chr3L 22996859 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-732 1207 chr3L 23042227 23042253 chr3L 23048980 23049006 gypsy6 5 6753 4.5 2.5 3.5 1.1 6779 chr3L 23042227 intergenic not near genes chr3L 23045616 intergenic not near genes chr3L 23049006 intergenic not near genes chr3L_5_23045001 chr3L_23045001 RAL-732 1208 chr3L 23088287 23088317 chr3L 23088369 23088399 4 82 0.5 2.0 1.2 1.8 112 chr3L 23088287 intergenic not near genes chr3L 23088343 intergenic not near genes chr3L 23088399 intergenic not near genes chr3L_4_23085001 chr3L_23085001 RAL-732 1209 chr3L 23182276 23182295 chr3L 23182390 23182409 5 114 5.5 8.0 6.8 0.6 133 chr3L 23182276 intron CG34031 + chr3L 23182342 intron CG34031 + chr3L 23182409 intron CG34031 + chr3L_5_23180001 chr3L_23180001 RAL-732 1210 chr3L 23325253 23325277 chr3L 23325373 23325397 7 120 6.5 4.5 5.5 1.1 144 chr3L 23325253 intron alpha-Cat - chr3L 23325325 intron alpha-Cat - chr3L 23325397 intron alpha-Cat - chr3L_7_23325001 chr3L_23325001 RAL-732 1211 chr3L 23868803 23868811 chr3L 23869154 23869162 4 351 14.0 16.0 15.0 0.2 359 chr3L 23868803 intron CG40470 - chr3L 23868982 intron CG40470 - chr3L 23869162 intron CG40470 - chr3L_4_23865001 chr3L_23865001 RAL-732 1212 chr3L 23881464 23881496 chr3L 23881543 23881576 6 80 5.5 4.0 4.8 1.0 112 chr3L 23881464 intron CG40470 - chr3L 23881520 intron CG40470 - chr3L 23881576 intron CG40470 - chr3L_6_23880001 chr3L_23880001 RAL-732 1213 chr3L 24168786 24168822 chr3L 24176114 24176146 ZAM 10 7327 4.0 3.0 3.5 2.2 7360 chr3L 24168786 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176146 intron Snap25 + chr3L_10_24170001 chr3L_24170001 RAL-732 1214 chr3L 24289937 24289950 chr3L 24290014 24290027 4 76 8.0 9.5 8.8 0.4 90 chr3L 24289937 intron Snap25 + chr3L 24289982 intron Snap25 + chr3L 24290027 intron Snap25 + chr3L_4_24285001 chr3L_24285001 RAL-732 1215 chr3L 24791896 24791922 chr3L 24796675 24796701 Doc 5 4779 0.5 1.5 1.0 2.5 4805 chr3L 24791896 intergenic not near genes chr3L 24794298 intergenic not near genes chr3L 24796701 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-732 1216 chr3L 25331635 25331653 chr3L 25331726 25331744 6 90 2.5 2.0 2.2 1.9 109 chr3L 25331635 intergenic not near genes chr3L 25331690 intergenic not near genes chr3L 25331744 intergenic not near genes chr3L_6_25330001 chr3L_25330001 RAL-732 1217 chr3L 25995917 25995945 chr3L 25995998 25996026 4 81 5.5 4.5 5.0 0.7 109 chr3L 25995917 intron CG40178 - chr3L 25995972 intron CG40178 - chr3L 25996026 intron CG40178 - chr3L_4_25995001 chr3L_25995001 RAL-732 1218 chr3L 26009428 26009454 chr3L 26009519 26009545 4 90 0.5 3.0 1.8 1.4 117 chr3L 26009428 intron CG40178 - chr3L 26009486 intron CG40178 - chr3L 26009545 intron CG40178 - chr3L_4_26005001 chr3L_26005001 RAL-732 1219 chr3L 27167953 27167978 chr3L 27168071 27168098 7 120 6.5 5.0 5.8 1.0 145 chr3L 27167953 intergenic not near genes chr3L 27168026 intergenic not near genes chr3L 27168098 intergenic not near genes chr3L_7_27165001 chr3L_27165001 RAL-732 1220 chr3L 27368879 27368909 chr3L 27369423 27369454 5 545 3.0 1.0 2.0 1.7 575 chr3L 27368879 intron Dbp80 + chr3L 27369166 intron Dbp80 + chr3L 27369454 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-732 1221 chr3L 27390689 27390711 chr3L 27390767 27390790 5 79 28.0 31.0 29.5 0.2 101 chr3L 27390689 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390790 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-732 1222 chr3L 22908066 22908067 chr3L 27698695 27698695 micropia 7 4790628 18.0 2.5 10.2 0.6 4790629 chr3L 22908066 intergenic not near genes chr3L 25303380 intron CG40467 - chr3L 27698695 intergenic not near genes chr3L_7_25300001 chr3L_25300001 RAL-732 1223 chr3R 892054 892065 chr3R 892286 892298 4 233 1.5 2.0 1.8 1.4 244 chr3R 892054 intron CG42621 + chr3R 892176 intron CG42621 + chr3R 892298 intron CG42621 + chr3R_4_890001 chr3R_890001 RAL-732 1224 chr3R 1443430 1443451 chr3R 1443506 1443527 7 76 0.0 0.0 0.0 7.0 97 chr3R 1443430 intron CG40155 + chr3R 1443478 intron CG40155 + chr3R 1443527 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-732 1225 chr3R 2534136 2534163 chr3R 2541702 2541732 12 7568 13.5 12.5 13.0 0.9 7596 chr3R 2534136 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_12_2535001 chr3R_2535001 RAL-732 1226 chr3R 4150555 4150573 chr3R 4150637 4150655 4 82 11.5 7.0 9.2 0.4 100 chr3R 4150555 intergenic not near genes chr3R 4150605 intergenic not near genes chr3R 4150655 intergenic not near genes chr3R_4_4150001 chr3R_4150001 RAL-732 1227 chr3R 4214790 4214814 chr3R 4215049 4215073 5 259 4.5 8.0 6.2 0.7 283 chr3R 4214790 intron,intron CG14636 -,aux + chr3R 4214932 intron,intron CG14636 -,aux + chr3R 4215073 intron,intron CG14636 -,aux + chr3R_5_4210001 chr3R_4210001 RAL-732 1228 chr3R 4366756 4366770 chr3R 4375139 4375153 roo 4 8383 6.5 0.5 3.5 0.9 8397 chr3R 4366756 3` UTR CG1090 + chr3R 4370954 intergenic not near genes chr3R 4375153 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-732 1229 chr3R 4408419 4408430 chr3R 4412722 4412734 Juan 4 4304 3.0 1.5 2.2 1.2 4315 chr3R 4408419 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412734 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-732 1230 chr3R 4599311 4599329 chr3R 4599395 4599413 5 84 7.0 4.5 5.8 0.7 102 chr3R 4599311 intron CR44317 - chr3R 4599362 intron CR44317 - chr3R 4599413 intron CR44317 - chr3R_5_4595001 chr3R_4595001 RAL-732 1231 chr3R 4653697 4653722 chr3R 4656373 4656398 4 2676 25.5 20.5 23.0 0.2 2701 chr3R 4653697 exon Karybeta3 + chr3R 4655048 5` UTR spartin + chr3R 4656398 exon spartin + chr3R_4_4655001 chr3R_4655001 RAL-732 1232 chr3R 4759723 4759745 chr3R 4761220 4761242 hopper2 6 1497 10.5 10.5 10.5 0.5 1519 chr3R 4759723 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761242 intron,intron atms +,CG44098 - chr3R_6_4760001 chr3R_4760001 RAL-732 1233 chr3R 4769164 4769182 chr3R 4769242 4769260 5 78 1.5 3.0 2.2 1.6 96 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769260 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-732 1234 chr3R 4856757 4856778 chr3R 4856843 4856865 5 87 5.5 2.5 4.0 1.0 108 chr3R 4856757 intron opa + chr3R 4856811 intron opa + chr3R 4856865 intron opa + chr3R_5_4855001 chr3R_4855001 RAL-732 1235 chr3R 4861565 4861595 chr3R 4861646 4861675 8 81 2.0 3.5 2.8 2.1 110 chr3R 4861565 intron opa + chr3R 4861620 intron opa + chr3R 4861675 intron opa + chr3R_8_4860001 chr3R_4860001 RAL-732 1236 chr3R 4885393 4885416 chr3R 4885484 4885507 4 90 3.5 4.0 3.8 0.8 114 chr3R 4885393 intergenic not near genes chr3R 4885450 intergenic not near genes chr3R 4885507 intergenic not near genes chr3R_4_4885001 chr3R_4885001 RAL-732 1237 chr3R 4887489 4887509 chr3R 4894866 4894883 rover 6 7376 2.0 5.0 3.5 1.3 7394 chr3R 4887489 intergenic not near genes chr3R 4891186 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-732 1238 chr3R 4918103 4918133 chr3R 4918301 4918329 9 197 6.5 10.5 8.5 0.9 226 chr3R 4918103 exon Cdep + chr3R 4918216 intron Cdep + chr3R 4918329 intron Cdep + chr3R_9_4915001 chr3R_4915001 RAL-732 1239 chr3R 5045845 5045873 chr3R 5052947 5052975 HMS-Beagle 6 7102 3.5 1.0 2.2 1.9 7130 chr3R 5045845 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052975 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-732 1240 chr3R 5067984 5067998 chr3R 5073501 5073515 mdg3 4 5517 2.0 3.5 2.8 1.1 5531 chr3R 5067984 intergenic not near genes chr3R 5070750 intergenic not near genes chr3R 5073515 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-732 1241 chr3R 5098877 5098891 chr3R 5098994 5099008 4 117 2.0 5.5 3.8 0.8 131 chr3R 5098877 intergenic not near genes chr3R 5098942 intergenic not near genes chr3R 5099008 intergenic not near genes chr3R_4_5095001 chr3R_5095001 RAL-732 1242 chr3R 5162939 5162961 chr3R 5163091 5163113 5 152 2.0 3.5 2.8 1.3 174 chr3R 5162939 intron dpr16 + chr3R 5163026 intron dpr16 + chr3R 5163113 intron dpr16 + chr3R_5_5160001 chr3R_5160001 RAL-732 1243 chr3R 5236223 5236243 chr3R 5236351 5236371 5 128 2.5 7.0 4.8 0.9 148 chr3R 5236223 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236297 3` UTR rtp - chr3R 5236371 3` UTR rtp - chr3R_5_5235001 chr3R_5235001 RAL-732 1244 chr3R 5278095 5278119 chr3R 5278176 5278200 9 81 2.5 2.5 2.5 2.6 105 chr3R 5278095 intron mtd - chr3R 5278148 intron mtd - chr3R 5278200 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-732 1245 chr3R 5335165 5335185 chr3R 5335243 5335264 4 79 3.0 4.0 3.5 0.9 99 chr3R 5335165 intron mtd - chr3R 5335214 intron mtd - chr3R 5335264 intron mtd - chr3R_4_5335001 chr3R_5335001 RAL-732 1246 chr3R 5445973 5445991 chr3R 5452433 5452451 Burdock 7 6460 1.5 6.5 4.0 1.4 6478 chr3R 5445973 intron CG14669 + chr3R 5449212 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-732 1247 chr3R 5453316 5453343 chr3R 5453429 5453456 4 113 0.5 3.5 2.0 1.3 140 chr3R 5453316 intron CG14669 + chr3R 5453386 intron CG14669 + chr3R 5453456 intron CG14669 + chr3R_4_5450001 chr3R_5450001 RAL-732 1248 chr3R 5626464 5626486 chr3R 5626555 5626577 7 91 12.0 7.0 9.5 0.7 113 chr3R 5626464 intergenic not near genes chr3R 5626520 intergenic not near genes chr3R 5626577 intergenic not near genes chr3R_7_5625001 chr3R_5625001 RAL-732 1249 chr3R 5627012 5627030 chr3R 5627128 5627146 4 116 5.0 4.5 4.8 0.7 134 chr3R 5627012 intergenic not near genes chr3R 5627079 intergenic not near genes chr3R 5627146 intergenic not near genes chr3R_4_5625001 chr3R_5625001 RAL-732 1250 chr3R 5698111 5698144 chr3R 5698205 5698239 8 94 4.0 6.5 5.2 1.3 128 chr3R 5698111 intron plx + chr3R 5698175 intron plx + chr3R 5698239 intron plx + chr3R_8_5695001 chr3R_5695001 RAL-732 1251 chr3R 5712081 5712106 chr3R 5712169 5712194 5 88 7.0 8.5 7.8 0.6 113 chr3R 5712081 3` UTR plx + chr3R 5712138 3` UTR plx + chr3R 5712194 3` UTR plx + chr3R_5_5710001 chr3R_5710001 RAL-732 1252 chr3R 5746021 5746039 chr3R 5746262 5746278 pogo 6 240 3.5 3.0 3.2 1.4 257 chr3R 5746021 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746278 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-732 1253 chr3R 5747024 5747045 chr3R 5753215 5753236 diver 4 6191 0.5 2.5 1.5 1.6 6212 chr3R 5747024 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-732 1254 chr3R 5774965 5774992 chr3R 5775054 5775081 8 89 9.5 11.0 10.2 0.7 116 chr3R 5774965 intron CG2082 - chr3R 5775023 intron CG2082 - chr3R 5775081 intron CG2082 - chr3R_8_5775001 chr3R_5775001 RAL-732 1255 chr3R 5800661 5800690 chr3R 5801287 5801316 4 626 14.0 4.0 9.0 0.4 655 chr3R 5800661 intergenic not near genes chr3R 5800988 intergenic not near genes chr3R 5801316 intergenic not near genes chr3R_4_5800001 chr3R_5800001 RAL-732 1256 chr3R 5822384 5822409 chr3R 5823551 5823575 1360 9 1167 3.5 7.5 5.5 1.4 1191 chr3R 5822384 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-732 1257 chr3R 5927559 5927588 chr3R 5927799 5927826 pogo 13 240 2.5 3.0 2.8 3.4 267 chr3R 5927559 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927826 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-732 1258 chr3R 5968180 5968197 chr3R 5968257 5968277 4 79 9.0 6.5 7.8 0.5 97 chr3R 5968180 intergenic not near genes chr3R 5968228 intergenic not near genes chr3R 5968277 intergenic not near genes chr3R_4_5965001 chr3R_5965001 RAL-732 1259 chr3R 5988948 5988980 chr3R 5989029 5989062 6 82 3.0 2.5 2.8 1.6 114 chr3R 5988948 intergenic CR44927 + chr3R 5989005 intergenic CR44927 + chr3R 5989062 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-732 1260 chr3R 6009500 6009529 chr3R 6009623 6009652 5 123 4.5 2.0 3.2 1.2 152 chr3R 6009500 intergenic not near genes chr3R 6009576 intergenic not near genes chr3R 6009652 intergenic not near genes chr3R_5_6005001 chr3R_6005001 RAL-732 1261 chr3R 6015961 6015995 chr3R 6024442 6024473 Tirant 6 8480 0.0 2.0 1.0 3.0 8512 chr3R 6015961 intergenic not near genes chr3R 6020217 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-732 1262 chr3R 6035143 6035181 chr3R 6035223 6035261 7 80 9.0 7.5 8.2 0.8 118 chr3R 6035143 intergenic not near genes chr3R 6035202 intergenic not near genes chr3R 6035261 intergenic not near genes chr3R_7_6035001 chr3R_6035001 RAL-732 1263 chr3R 6141915 6141952 chr3R 6141991 6142029 5 77 9.5 12.5 11.0 0.4 114 chr3R 6141915 intergenic not near genes chr3R 6141972 intergenic not near genes chr3R 6142029 intergenic not near genes chr3R_5_6140001 chr3R_6140001 RAL-732 1264 chr3R 6158510 6158535 chr3R 6167093 6167117 Tirant 8 8582 3.5 4.5 4.0 1.6 8607 chr3R 6158510 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167117 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-732 1265 chr3R 6175172 6175199 chr3R 6182444 6182470 HMS-Beagle2 10 7272 2.0 0.0 1.0 5.0 7298 chr3R 6175172 intergenic Osi1 + chr3R 6178821 intron CR45194 + chr3R 6182470 intergenic CR45194 + chr3R_10_6175001 chr3R_6175001 RAL-732 1266 chr3R 6192635 6192659 chr3R 6192720 6192744 10 85 8.5 12.5 10.5 0.9 109 chr3R 6192635 exon NPFR + chr3R 6192690 intron NPFR + chr3R 6192744 intron NPFR + chr3R_10_6190001 chr3R_6190001 RAL-732 1267 chr3R 6206287 6206320 chr3R 6206504 6206537 BS 13 217 5.0 5.0 5.0 2.2 250 chr3R 6206287 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206537 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-732 1268 chr3R 6316795 6316812 chr3R 6316888 6316905 10 92 1.0 4.0 2.5 2.9 110 chr3R 6316795 intron Osi17 + chr3R 6316850 intron Osi17 + chr3R 6316905 intron Osi17 + chr3R_10_6315001 chr3R_6315001 RAL-732 1269 chr3R 6412912 6412939 chr3R 6412989 6413016 6 76 5.0 4.0 4.5 1.1 104 chr3R 6412912 intron gpp + chr3R 6412964 intron gpp + chr3R 6413016 intron gpp + chr3R_6_6410001 chr3R_6410001 RAL-732 1270 chr3R 6491678 6491699 chr3R 6491774 6491795 5 97 6.0 13.0 9.5 0.5 117 chr3R 6491678 intron CG15186 + chr3R 6491736 intron CG15186 + chr3R 6491795 intron CG15186 + chr3R_5_6490001 chr3R_6490001 RAL-732 1271 chr3R 6510027 6510055 chr3R 6515108 6515136 jockey 8 5081 1.0 1.0 1.0 4.0 5109 chr3R 6510027 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515136 intergenic not near genes chr3R_8_6510001 chr3R_6510001 RAL-732 1272 chr3R 6557825 6557833 chr3R 6557903 6557911 4 78 12.5 12.0 12.2 0.3 86 chr3R 6557825 intron dpr11 - chr3R 6557868 intron dpr11 - chr3R 6557911 intron dpr11 - chr3R_4_6555001 chr3R_6555001 RAL-732 1273 chr3R 6624263 6624283 chr3R 6624345 6624365 8 82 2.0 1.0 1.5 3.2 102 chr3R 6624263 intergenic not near genes chr3R 6624314 intergenic not near genes chr3R 6624365 intergenic not near genes chr3R_8_6620001 chr3R_6620001 RAL-732 1274 chr3R 6639912 6639927 chr3R 6639990 6640003 4 78 3.5 1.0 2.2 1.2 91 chr3R 6639912 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640003 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-732 1275 chr3R 6661852 6661861 chr3R 6661933 6661942 4 81 8.0 3.5 5.8 0.6 90 chr3R 6661852 3` UTR lab - chr3R 6661897 3` UTR lab - chr3R 6661942 3` UTR lab - chr3R_4_6660001 chr3R_6660001 RAL-732 1276 chr3R 6727555 6727577 chr3R 6727641 6727663 7 86 3.0 5.5 4.2 1.3 108 chr3R 6727555 intron pb - chr3R 6727609 intron pb - chr3R 6727663 intron pb - chr3R_7_6725001 chr3R_6725001 RAL-732 1277 chr3R 6737501 6737524 chr3R 6739288 6739311 Doc 11 1787 4.0 1.5 2.8 2.9 1810 chr3R 6737501 intron pb - chr3R 6738406 intron pb - chr3R 6739311 intron pb - chr3R_11_6735001 chr3R_6735001 RAL-732 1278 chr3R 6856386 6856399 chr3R 6856503 6856516 4 117 2.5 1.5 2.0 1.3 130 chr3R 6856386 intergenic not near genes chr3R 6856451 intergenic not near genes chr3R 6856516 intergenic not near genes chr3R_4_6855001 chr3R_6855001 RAL-732 1279 chr3R 6862229 6862253 chr3R 6862316 6862340 7 87 3.0 1.5 2.2 2.2 111 chr3R 6862229 intergenic not near genes chr3R 6862284 intergenic not near genes chr3R 6862340 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-732 1280 chr3R 6918175 6918206 chr3R 6918290 6918321 7 114 2.0 2.5 2.2 2.2 146 chr3R 6918175 intron Antp - chr3R 6918248 intron Antp - chr3R 6918321 intron Antp - chr3R_7_6915001 chr3R_6915001 RAL-732 1281 chr3R 7103292 7103317 chr3R 7103366 7103390 5 75 4.0 5.0 4.5 0.9 98 chr3R 7103292 intron Alh - chr3R 7103341 intron Alh - chr3R 7103390 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-732 1282 chr3R 7210610 7210616 chr3R 7210696 7210702 4 86 0.0 5.0 2.5 1.1 92 chr3R 7210610 intergenic not near genes chr3R 7210656 intergenic not near genes chr3R 7210702 intergenic not near genes chr3R_4_7210001 chr3R_7210001 RAL-732 1283 chr3R 7320429 7320450 chr3R 7320517 7320538 6 88 2.0 4.0 3.0 1.5 109 chr3R 7320429 intergenic not near genes chr3R 7320484 intergenic not near genes chr3R 7320538 intergenic not near genes chr3R_6_7320001 chr3R_7320001 RAL-732 1284 chr3R 7373001 7373019 chr3R 7373078 7373098 5 76 2.0 5.0 3.5 1.1 97 chr3R 7373001 intergenic not near genes chr3R 7373050 intergenic not near genes chr3R 7373098 intergenic not near genes chr3R_5_7370001 chr3R_7370001 RAL-732 1285 chr3R 7565999 7566030 chr3R 7566080 7566111 6 80 9.0 7.0 8.0 0.7 112 chr3R 7565999 intergenic not near genes chr3R 7566055 intergenic not near genes chr3R 7566111 intergenic not near genes chr3R_6_7565001 chr3R_7565001 RAL-732 1286 chr3R 7677915 7677945 chr3R 7678028 7678058 7 113 1.0 1.5 1.2 3.2 143 chr3R 7677915 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-732 1287 chr3R 7694591 7694606 chr3R 7713652 7713667 invader3 4 19061 0.5 3.0 1.8 1.4 19076 chr3R 7694591 3` UTR Nlg1 + chr3R 7704129 intergenic not near genes chr3R 7713667 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-732 1288 chr3R 7729469 7729497 chr3R 7737406 7737434 Stalker2 4 7938 2.5 2.5 2.5 1.1 7965 chr3R 7729469 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-732 1289 chr3R 7760256 7760286 chr3R 7760765 7760795 6 509 8.0 5.0 6.5 0.8 539 chr3R 7760256 intron Sp7 + chr3R 7760526 intron Sp7 + chr3R 7760795 5` UTR Sp7 + chr3R_6_7760001 chr3R_7760001 RAL-732 1290 chr3R 7857643 7857671 chr3R 7857726 7857754 4 83 5.0 6.0 5.5 0.6 111 chr3R 7857643 3` UTR CG17816 - chr3R 7857698 3` UTR CG17816 - chr3R 7857754 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-732 1291 chr3R 7965315 7965338 chr3R 7965402 7965426 5 87 1.5 1.5 1.5 2.0 111 chr3R 7965315 intron dsx - chr3R 7965370 intron dsx - chr3R 7965426 intron dsx - chr3R_5_7965001 chr3R_7965001 RAL-732 1292 chr3R 7973314 7973348 chr3R 7974376 7974412 1360 4 1063 1.0 1.5 1.2 1.8 1098 chr3R 7973314 intergenic not near genes chr3R 7973863 intergenic not near genes chr3R 7974412 3` UTR CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-732 1293 chr3R 7998851 7998880 chr3R 7998935 7998964 4 84 9.0 12.0 10.5 0.3 113 chr3R 7998851 intergenic not near genes chr3R 7998908 intergenic not near genes chr3R 7998964 intergenic not near genes chr3R_4_7995001 chr3R_7995001 RAL-732 1294 chr3R 8094428 8094440 chr3R 8099733 8099745 Transpac 5 5305 1.5 3.5 2.5 1.4 5317 chr3R 8094428 intron CG7900 + chr3R 8097086 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-732 1295 chr3R 8144767 8144786 chr3R 8144851 8144869 6 84 4.0 6.5 5.2 1.0 102 chr3R 8144767 intergenic not near genes chr3R 8144818 intergenic not near genes chr3R 8144869 intergenic not near genes chr3R_6_8140001 chr3R_8140001 RAL-732 1296 chr3R 8207556 8207587 chr3R 8208401 8208432 F-element 7 845 0.5 1.5 1.0 3.5 876 chr3R 8207556 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208432 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-732 1297 chr3R 8339241 8339247 chr3R 21907534 21907536 27 13568290 14.0 16.5 15.2 1.7 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_27_15120001 chr3R_15120001 RAL-732 1298 chr3R 8403021 8403038 chr3R 8412187 8412203 roo 6 9166 5.0 8.0 6.5 0.8 9182 chr3R 8403021 intron CG45263 - chr3R 8407612 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-732 1299 chr3R 8478092 8478110 chr3R 8478168 8478190 5 79 7.0 6.5 6.8 0.6 98 chr3R 8478092 intergenic CG45263 - chr3R 8478141 intergenic not near genes chr3R 8478190 intergenic not near genes chr3R_5_8475001 chr3R_8475001 RAL-732 1300 chr3R 8570479 8570504 chr3R 8575115 8575140 HMS-Beagle 9 4636 1.0 2.0 1.5 3.6 4661 chr3R 8570479 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575140 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-732 1301 chr3R 8575926 8575956 chr3R 8576009 8576038 7 83 8.0 6.0 7.0 0.9 112 chr3R 8575926 intergenic not near genes chr3R 8575982 intergenic not near genes chr3R 8576038 intergenic not near genes chr3R_7_8575001 chr3R_8575001 RAL-732 1302 chr3R 8589855 8589887 chr3R 8590403 8590435 5 547 10.0 10.0 10.0 0.5 580 chr3R 8589855 intron 5-HT2B + chr3R 8590145 intron 5-HT2B + chr3R 8590435 intron 5-HT2B + chr3R_5_8590001 chr3R_8590001 RAL-732 1303 chr3R 8601772 8601800 chr3R 8610925 8610953 roo 5 9152 2.0 1.0 1.5 2.0 9181 chr3R 8601772 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-732 1304 chr3R 8621539 8621556 chr3R 8621616 8621633 4 76 7.0 8.5 7.8 0.5 94 chr3R 8621539 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621633 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-732 1305 chr3R 8707354 8707380 chr3R 8709795 8709820 jockey 5 2441 2.0 1.0 1.5 2.0 2466 chr3R 8707354 intergenic not near genes chr3R 8708587 intergenic not near genes chr3R 8709820 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-732 1306 chr3R 8743184 8743204 chr3R 8743266 8743286 5 82 17.5 15.5 16.5 0.3 102 chr3R 8743184 intron CG9801 - chr3R 8743235 intron CG9801 - chr3R 8743286 intron CG9801 - chr3R_5_8740001 chr3R_8740001 RAL-732 1307 chr3R 8745758 8745765 chr3R 8745869 8745876 4 111 4.5 10.5 7.5 0.5 118 chr3R 8745758 intron CG9801 - chr3R 8745817 intron CG9801 - chr3R 8745876 intron CG9801 - chr3R_4_8745001 chr3R_8745001 RAL-732 1308 chr3R 8757345 8757364 chr3R 8757425 8757445 6 81 2.5 2.0 2.2 1.9 100 chr3R 8757345 intron,intron CG11768 -,CG34135 - chr3R 8757395 intron,intron CG11768 -,CG34135 - chr3R 8757445 intron,intron CG11768 -,CG34135 - chr3R_6_8755001 chr3R_8755001 RAL-732 1309 chr3R 8856367 8856391 chr3R 8856444 8856466 6 77 3.0 3.5 3.2 1.4 99 chr3R 8856367 intron pyd - chr3R 8856416 intron pyd - chr3R 8856466 intron pyd - chr3R_6_8855001 chr3R_8855001 RAL-732 1310 chr3R 8894871 8894895 chr3R 8896027 8896051 1360 4 1156 6.0 9.0 7.5 0.5 1180 chr3R 8894871 intron pyd - chr3R 8895461 intron pyd - chr3R 8896051 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-732 1311 chr3R 8940132 8940152 chr3R 8940222 8940242 4 90 4.0 4.0 4.0 0.8 110 chr3R 8940132 intron skap + chr3R 8940187 intron skap + chr3R 8940242 intron skap + chr3R_4_8940001 chr3R_8940001 RAL-732 1312 chr3R 9083142 9083160 chr3R 9083227 9083245 5 85 1.5 7.0 4.2 1.0 103 chr3R 9083142 intron pum - chr3R 9083194 intron pum - chr3R 9083245 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-732 1313 chr3R 9135839 9135861 chr3R 9136171 9136193 6 332 3.5 4.5 4.0 1.2 354 chr3R 9135839 intron pum - chr3R 9136016 intron pum - chr3R 9136193 intron pum - chr3R_6_9135001 chr3R_9135001 RAL-732 1314 chr3R 9278780 9278808 chr3R 9284040 9284068 Rt1a 8 5260 1.5 2.5 2.0 2.7 5288 chr3R 9278780 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-732 1315 chr3R 9347850 9347869 chr3R 9347933 9347952 4 83 4.0 5.5 4.8 0.7 102 chr3R 9347850 intron CG45050 + chr3R 9347901 intron CG45050 + chr3R 9347952 intron CG45050 + chr3R_4_9345001 chr3R_9345001 RAL-732 1316 chr3R 9382817 9382845 chr3R 9382942 9382970 4 125 2.5 3.0 2.8 1.1 153 chr3R 9382817 intron FER - chr3R 9382894 intron FER - chr3R 9382970 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-732 1317 chr3R 9440348 9440365 chr3R 9440434 9440449 4 85 4.0 10.0 7.0 0.5 101 chr3R 9440348 intron ps + chr3R 9440398 intron ps + chr3R 9440449 intron ps + chr3R_4_9440001 chr3R_9440001 RAL-732 1318 chr3R 9449609 9449632 chr3R 9449702 9449727 4 94 2.0 2.5 2.2 1.2 118 chr3R 9449609 3` UTR ps + chr3R 9449668 3` UTR ps + chr3R 9449727 3` UTR ps + chr3R_4_9445001 chr3R_9445001 RAL-732 1319 chr3R 9453541 9453565 chr3R 9453613 9453642 6 76 4.0 4.5 4.2 1.2 101 chr3R 9453541 3` UTR ps + chr3R 9453592 3` UTR ps + chr3R 9453642 3` UTR ps + chr3R_6_9450001 chr3R_9450001 RAL-732 1320 chr3R 9810598 9810600 chr3R 9810672 9810677 4 76 14.0 11.5 12.8 0.3 79 chr3R 9810598 3` UTR CR44035 - chr3R 9810638 3` UTR CR44035 - chr3R 9810677 3` UTR CR44035 - chr3R_4_9810001 chr3R_9810001 RAL-732 1321 chr3R 9889553 9889568 chr3R 9889645 9889660 4 92 17.0 14.0 15.5 0.2 107 chr3R 9889553 intron Glut4EF + chr3R 9889606 intron Glut4EF + chr3R 9889660 intron Glut4EF + chr3R_4_9885001 chr3R_9885001 RAL-732 1322 chr3R 10066909 10066937 chr3R 10068000 10068028 7 1091 3.5 5.5 4.5 1.3 1119 chr3R 10066909 exon CG33783 + chr3R 10067468 exon CG33783 + chr3R 10068028 exon CG33784 + chr3R_7_10065001 chr3R_10065001 RAL-732 1323 chr3R 10073770 10073798 chr3R 10073879 10073907 6 109 4.5 4.0 4.2 1.2 137 chr3R 10073770 intergenic nerfin-2 +,CG5361 - chr3R 10073838 3` UTR CG5361 - chr3R 10073907 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-732 1324 chr3R 10106542 10106563 chr3R 10106620 10106641 4 78 7.5 5.0 6.2 0.6 99 chr3R 10106542 intron Fmr1 - chr3R 10106592 intron Fmr1 - chr3R 10106641 intron Fmr1 - chr3R_4_10105001 chr3R_10105001 RAL-732 1325 chr3R 10146699 10146717 chr3R 10146804 10146823 4 106 8.0 8.0 8.0 0.4 124 chr3R 10146699 intron Invadolysin + chr3R 10146761 intron Invadolysin + chr3R 10146823 intron Invadolysin + chr3R_4_10145001 chr3R_10145001 RAL-732 1326 chr3R 10174120 10174157 chr3R 10174202 10174238 9 82 3.0 4.0 3.5 2.0 118 chr3R 10174120 intron CG12814 - chr3R 10174179 intron CG12814 - chr3R 10174238 intron CG12814 - chr3R_9_10170001 chr3R_10170001 RAL-732 1327 chr3R 10470879 10470901 chr3R 10470968 10470990 4 89 6.0 8.0 7.0 0.5 111 chr3R 10470879 intergenic not near genes chr3R 10470934 intergenic not near genes chr3R 10470990 intergenic not near genes chr3R_4_10470001 chr3R_10470001 RAL-732 1328 chr3R 10531872 10531885 chr3R 10531953 10531966 5 81 5.0 2.5 3.8 1.0 94 chr3R 10531872 intron hth - chr3R 10531919 intron hth - chr3R 10531966 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-732 1329 chr3R 10727643 10727670 chr3R 10727723 10727749 6 80 5.5 7.0 6.2 0.8 106 chr3R 10727643 intergenic not near genes chr3R 10727696 intergenic not near genes chr3R 10727749 intergenic not near genes chr3R_6_10725001 chr3R_10725001 RAL-732 1330 chr3R 10906834 10906848 chr3R 10906907 10906923 5 75 5.0 7.0 6.0 0.7 89 chr3R 10906834 intergenic not near genes chr3R 10906878 intergenic not near genes chr3R 10906923 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-732 1331 chr3R 10919683 10919718 chr3R 10919761 10919794 8 78 3.5 2.5 3.0 2.0 111 chr3R 10919683 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_8_10915001 chr3R_10915001 RAL-732 1332 chr3R 10920043 10920079 chr3R 10920121 10920157 10 78 1.5 4.5 3.0 2.5 114 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_10_10920001 chr3R_10920001 RAL-732 1333 chr3R 10942222 10942250 chr3R 10942304 10942331 4 82 6.0 4.5 5.2 0.6 109 chr3R 10942222 intergenic not near genes chr3R 10942276 intergenic not near genes chr3R 10942331 intergenic not near genes chr3R_4_10940001 chr3R_10940001 RAL-732 1334 chr3R 10957864 10957884 chr3R 10963253 10963269 Rt1c 9 5387 6.5 5.5 6.0 1.3 5405 chr3R 10957864 intergenic not near genes chr3R 10960566 intergenic not near genes chr3R 10963269 intergenic not near genes chr3R_9_10960001 chr3R_10960001 RAL-732 1335 chr3R 10971483 10971502 chr3R 10971574 10971593 4 90 6.5 4.5 5.5 0.6 110 chr3R 10971483 intergenic not near genes chr3R 10971538 intergenic not near genes chr3R 10971593 intergenic not near genes chr3R_4_10970001 chr3R_10970001 RAL-732 1336 chr3R 11039450 11039464 chr3R 11039527 11039542 4 78 9.0 8.0 8.5 0.4 92 chr3R 11039450 intron CG34114 + chr3R 11039496 intron CG34114 + chr3R 11039542 intron CG34114 + chr3R_4_11035001 chr3R_11035001 RAL-732 1337 chr3R 11087441 11087467 chr3R 11087517 11087543 6 75 7.5 5.5 6.5 0.8 102 chr3R 11087441 intergenic not near genes chr3R 11087492 intergenic not near genes chr3R 11087543 intergenic not near genes chr3R_6_11085001 chr3R_11085001 RAL-732 1338 chr3R 11102324 11102350 chr3R 11102405 11102431 10 81 3.5 3.0 3.2 2.4 107 chr3R 11102324 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102431 intergenic not near genes chr3R_10_11100001 chr3R_11100001 RAL-732 1339 chr3R 11174606 11174614 chr3R 11175320 11175328 4 714 12.0 16.5 14.2 0.3 722 chr3R 11174606 exon Ugt86Dj - chr3R 11174967 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-732 1340 chr3R 11197992 11198018 chr3R 11198090 11198117 6 99 4.0 6.0 5.0 1.0 125 chr3R 11197992 intron cu + chr3R 11198054 intron cu + chr3R 11198117 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-732 1341 chr3R 11266205 11266233 chr3R 11266290 11266318 7 84 8.0 8.0 8.0 0.8 113 chr3R 11266205 intergenic not near genes chr3R 11266262 intergenic not near genes chr3R 11266318 intergenic not near genes chr3R_7_11265001 chr3R_11265001 RAL-732 1342 chr3R 11268080 11268103 chr3R 11268159 11268182 5 79 9.5 8.0 8.8 0.5 102 chr3R 11268080 intergenic not near genes chr3R 11268131 intergenic not near genes chr3R 11268182 intergenic not near genes chr3R_5_11265001 chr3R_11265001 RAL-732 1343 chr3R 11272377 11272402 chr3R 11272458 11272483 7 81 3.0 2.5 2.8 1.8 106 chr3R 11272377 intron CR31386 - chr3R 11272430 intron CR31386 - chr3R 11272483 intron CR31386 - chr3R_7_11270001 chr3R_11270001 RAL-732 1344 chr3R 11333522 11333554 chr3R 11333610 11333642 5 88 11.5 9.5 10.5 0.4 120 chr3R 11333522 intron pros + chr3R 11333582 intron pros + chr3R 11333642 intron pros + chr3R_5_11330001 chr3R_11330001 RAL-732 1345 chr3R 11379238 11379262 chr3R 11388393 11388417 roo 5 9155 1.5 3.5 2.5 1.4 9179 chr3R 11379238 intron pros + chr3R 11383828 intron pros + chr3R 11388417 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-732 1346 chr3R 11452078 11452096 chr3R 11452164 11452183 6 87 5.0 6.5 5.8 0.9 105 chr3R 11452078 intron CG17230 + chr3R 11452130 intron CG17230 + chr3R 11452183 intron CG17230 + chr3R_6_11450001 chr3R_11450001 RAL-732 1347 chr3R 11485556 11485580 chr3R 11485643 11485667 5 87 6.0 4.5 5.2 0.8 111 chr3R 11485556 intergenic not near genes chr3R 11485612 intergenic not near genes chr3R 11485667 intergenic not near genes chr3R_5_11485001 chr3R_11485001 RAL-732 1348 chr3R 11513847 11513876 chr3R 11513930 11513959 5 83 4.0 2.0 3.0 1.2 112 chr3R 11513847 intergenic not near genes chr3R 11513903 intergenic not near genes chr3R 11513959 intergenic not near genes chr3R_5_11510001 chr3R_11510001 RAL-732 1349 chr3R 11518817 11518847 chr3R 11518908 11518938 9 91 2.0 2.0 2.0 3.0 121 chr3R 11518817 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518938 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-732 1350 chr3R 11694738 11694753 chr3R 11694831 11694846 5 93 2.5 4.0 3.2 1.2 108 chr3R 11694738 intergenic Fer3 - chr3R 11694792 intergenic Fer3 - chr3R 11694846 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-732 1351 chr3R 11841073 11841080 chr3R 11846264 11846271 BS 7 5190 4.5 4.0 4.2 1.3 5198 chr3R 11841073 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846271 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-732 1352 chr3R 11850318 11850334 chr3R 11850397 11850413 4 79 7.0 5.5 6.2 0.6 95 chr3R 11850318 intron CG6959 - chr3R 11850366 intron CG6959 - chr3R 11850413 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-732 1353 chr3R 11853436 11853469 chr3R 11853585 11853616 7 147 4.5 5.5 5.0 1.2 180 chr3R 11853436 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853616 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-732 1354 chr3R 11853767 11853788 chr3R 11853872 11853893 6 105 4.5 3.5 4.0 1.2 126 chr3R 11853767 intron CG6959 - chr3R 11853830 intron CG6959 - chr3R 11853893 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-732 1355 chr3R 11914371 11914398 chr3R 11914456 11914483 6 85 6.0 5.5 5.8 0.9 112 chr3R 11914371 intron Cad87A - chr3R 11914427 intron Cad87A - chr3R 11914483 intron Cad87A - chr3R_6_11910001 chr3R_11910001 RAL-732 1356 chr3R 11919314 11919337 chr3R 11919400 11919425 4 88 16.0 12.0 14.0 0.3 111 chr3R 11919314 intron Cad87A - chr3R 11919370 intron Cad87A - chr3R 11919425 intron Cad87A - chr3R_4_11915001 chr3R_11915001 RAL-732 1357 chr3R 12022883 12022908 chr3R 12025060 12025085 pogo 9 2177 1.5 2.0 1.8 3.2 2202 chr3R 12022883 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025085 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-732 1358 chr3R 12082003 12082025 chr3R 12082079 12082100 8 76 3.5 6.5 5.0 1.3 97 chr3R 12082003 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082100 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-732 1359 chr3R 12328162 12328183 chr3R 12328273 12328294 4 111 4.0 2.5 3.2 1.0 132 chr3R 12328162 intergenic CR45584 + chr3R 12328228 intergenic CR45584 + chr3R 12328294 intergenic CR45584 + chr3R_4_12325001 chr3R_12325001 RAL-732 1360 chr3R 12333816 12333834 chr3R 12333912 12333930 6 96 6.0 10.5 8.2 0.7 114 chr3R 12333816 intergenic not near genes chr3R 12333873 intergenic not near genes chr3R 12333930 intergenic not near genes chr3R_6_12330001 chr3R_12330001 RAL-732 1361 chr3R 12369210 12369225 chr3R 12369334 12369348 4 124 6.5 1.0 3.8 0.8 138 chr3R 12369210 5` UTR GstD1 - chr3R 12369279 intergenic GstD1 - chr3R 12369348 intergenic GstD1 - chr3R_4_12365001 chr3R_12365001 RAL-732 1362 chr3R 12441067 12441092 chr3R 12441148 12441173 5 81 8.0 10.0 9.0 0.5 106 chr3R 12441067 intron Desat1 + chr3R 12441120 intron Desat1 + chr3R 12441173 intron Desat1 + chr3R_5_12440001 chr3R_12440001 RAL-732 1363 chr3R 12522356 12522381 chr3R 12522442 12522467 7 85 9.5 9.0 9.2 0.7 111 chr3R 12522356 5` UTR Octbeta3R - chr3R 12522412 5` UTR Octbeta3R - chr3R 12522467 5` UTR Octbeta3R - chr3R_7_12520001 chr3R_12520001 RAL-732 1364 chr3R 12568446 12568467 chr3R 12568522 12568540 5 75 6.5 6.0 6.2 0.7 94 chr3R 12568446 intron Octbeta2R - chr3R 12568493 intron Octbeta2R - chr3R 12568540 intron Octbeta2R - chr3R_5_12565001 chr3R_12565001 RAL-732 1365 chr3R 12720728 12720761 chr3R 12720898 12720931 7 170 3.5 2.0 2.8 1.8 203 chr3R 12720728 intron Men - chr3R 12720830 intron Men - chr3R 12720931 intron Men - chr3R_7_12720001 chr3R_12720001 RAL-732 1366 chr3R 12725947 12725962 chr3R 12726052 12726066 4 104 3.0 1.0 2.0 1.3 119 chr3R 12725947 intergenic not near genes chr3R 12726006 intergenic not near genes chr3R 12726066 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-732 1367 chr3R 12735800 12735828 chr3R 12735897 12735926 4 98 2.5 1.5 2.0 1.3 126 chr3R 12735800 intergenic not near genes chr3R 12735863 intergenic not near genes chr3R 12735926 intergenic not near genes chr3R_4_12735001 chr3R_12735001 RAL-732 1368 chr3R 12766426 12766435 chr3R 12766510 12766519 4 84 2.5 3.0 2.8 1.1 93 chr3R 12766426 intron beat-Vc - chr3R 12766472 intron beat-Vc - chr3R 12766519 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-732 1369 chr3R 12825838 12825853 chr3R 12825918 12825933 6 80 11.5 9.5 10.5 0.5 95 chr3R 12825838 intergenic not near genes chr3R 12825886 intergenic not near genes chr3R 12825933 intergenic not near genes chr3R_6_12825001 chr3R_12825001 RAL-732 1370 chr3R 12866487 12866510 chr3R 12866638 12866661 4 151 2.0 4.5 3.2 1.0 174 chr3R 12866487 intergenic not near genes chr3R 12866574 intergenic not near genes chr3R 12866661 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-732 1371 chr3R 12885109 12885123 chr3R 12885216 12885230 4 106 3.5 0.5 2.0 1.3 121 chr3R 12885109 intergenic not near genes chr3R 12885170 intergenic not near genes chr3R 12885230 intergenic not near genes chr3R_4_12885001 chr3R_12885001 RAL-732 1372 chr3R 12920158 12920183 chr3R 12925361 12925382 copia 5 5202 4.0 3.0 3.5 1.1 5224 chr3R 12920158 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925382 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-732 1373 chr3R 12947294 12947549 chr3R 12947454 12947627 4 120 14.5 2.0 8.2 0.4 333 chr3R 12947294 intergenic not near genes chr3R 12947460 intergenic not near genes chr3R 12947627 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-732 1374 chr3R 12972560 12972583 chr3R 12972699 12972722 5 139 2.0 2.0 2.0 1.7 162 chr3R 12972560 intron CG7381 - chr3R 12972641 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-732 1375 chr3R 13013216 13013240 chr3R 13013295 13013322 4 81 6.0 7.5 6.8 0.5 106 chr3R 13013216 intron CtBP + chr3R 13013269 intron CtBP + chr3R 13013322 intron CtBP + chr3R_4_13010001 chr3R_13010001 RAL-732 1376 chr3R 13015752 13015775 chr3R 13015839 13015862 5 87 10.0 11.5 10.8 0.4 110 chr3R 13015752 intron CtBP + chr3R 13015807 intron CtBP + chr3R 13015862 intron CtBP + chr3R_5_13015001 chr3R_13015001 RAL-732 1377 chr3R 13042984 13043003 chr3R 13043218 13043237 4 234 10.5 7.0 8.8 0.4 253 chr3R 13042984 exon CG11670 + chr3R 13043110 intron CG11670 + chr3R 13043237 intron CG11670 + chr3R_4_13040001 chr3R_13040001 RAL-732 1378 chr3R 13067838 13067856 chr3R 13067918 13067936 5 80 11.0 6.0 8.5 0.5 98 chr3R 13067838 intron sim + chr3R 13067887 intron sim + chr3R 13067936 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-732 1379 chr3R 13075362 13075390 chr3R 13075443 13075471 8 81 2.5 2.0 2.2 2.5 109 chr3R 13075362 intron sim + chr3R 13075416 intron sim + chr3R 13075471 intron sim + chr3R_8_13075001 chr3R_13075001 RAL-732 1380 chr3R 13104419 13104421 chr3R 21907534 21907535 13 8803115 10.0 16.5 13.2 0.9 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_13_17505001 chr3R_17505001 RAL-732 1381 chr3R 13138323 13138350 chr3R 13138411 13138436 8 87 3.0 5.5 4.2 1.5 113 chr3R 13138323 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138380 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138436 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13135001 chr3R_13135001 RAL-732 1382 chr3R 13143040 13143065 chr3R 13148615 13148641 mdg3 12 5575 2.0 3.0 2.5 3.4 5601 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_12_13145001 chr3R_13145001 RAL-732 1383 chr3R 13349004 13349032 chr3R 13349080 13349108 7 76 5.5 7.0 6.2 1.0 104 chr3R 13349004 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349108 intergenic not near genes chr3R_7_13345001 chr3R_13345001 RAL-732 1384 chr3R 13380722 13380751 chr3R 13380810 13380838 5 88 4.5 4.5 4.5 0.9 116 chr3R 13380722 exon CG8870 + chr3R 13380780 exon CG8870 + chr3R 13380838 intron CG8870 + chr3R_5_13380001 chr3R_13380001 RAL-732 1385 chr3R 13418673 13418683 chr3R 13418749 13418759 6 76 1.0 1.0 1.0 3.0 86 chr3R 13418673 intergenic not near genes chr3R 13418716 intergenic not near genes chr3R 13418759 intergenic not near genes chr3R_6_13415001 chr3R_13415001 RAL-732 1386 chr3R 13603063 13603077 chr3R 13603154 13603168 5 91 6.5 2.0 4.2 1.0 105 chr3R 13603063 intergenic not near genes chr3R 13603116 intergenic not near genes chr3R 13603168 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-732 1387 chr3R 13672945 13672962 chr3R 13673023 13673040 5 78 8.5 7.0 7.8 0.6 95 chr3R 13672945 intron Task6 - chr3R 13672992 intron Task6 - chr3R 13673040 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-732 1388 chr3R 13693028 13693029 chr3R 21907534 21907534 31 8214507 13.5 16.5 15.0 1.9 8214506 chr3R 13693028 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_31_17800001 chr3R_17800001 RAL-732 1389 chr3R 13741217 13741243 chr3R 13741293 13741322 7 78 6.0 8.0 7.0 0.9 105 chr3R 13741217 intron CG34383 + chr3R 13741270 intron CG34383 + chr3R 13741322 intron CG34383 + chr3R_7_13740001 chr3R_13740001 RAL-732 1390 chr3R 13863691 13863712 chr3R 13863775 13863800 4 87 4.5 5.0 4.8 0.7 109 chr3R 13863691 intergenic not near genes chr3R 13863746 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-732 1391 chr3R 14037584 14037589 chr3R 14037665 14037669 4 80 3.0 2.5 2.8 1.1 85 chr3R 14037584 intergenic not near genes chr3R 14037626 intergenic not near genes chr3R 14037669 intergenic not near genes chr3R_4_14035001 chr3R_14035001 RAL-732 1392 chr3R 14049022 14049035 chr3R 14049102 14049114 4 80 4.5 4.5 4.5 0.7 92 chr3R 14049022 intergenic not near genes chr3R 14049068 intergenic not near genes chr3R 14049114 intergenic not near genes chr3R_4_14045001 chr3R_14045001 RAL-732 1393 chr3R 14117440 14117473 chr3R 14117514 14117549 9 76 1.5 2.5 2.0 3.0 109 chr3R 14117440 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117549 intron Kif19A - chr3R_9_14115001 chr3R_14115001 RAL-732 1394 chr3R 14118021 14118042 chr3R 14118174 14118195 6 152 3.5 4.5 4.0 1.2 174 chr3R 14118021 intron Kif19A - chr3R 14118108 intron Kif19A - chr3R 14118195 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-732 1395 chr3R 14246405 14246413 chr3R 14247901 14247908 jockey 4 1495 5.0 2.5 3.8 0.8 1503 chr3R 14246405 intergenic not near genes chr3R 14247156 intergenic not near genes chr3R 14247908 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-732 1396 chr3R 14331759 14331791 chr3R 14331849 14331881 7 90 5.0 4.5 4.8 1.2 122 chr3R 14331759 intron NK7.1 - chr3R 14331820 intron NK7.1 - chr3R 14331881 intron NK7.1 - chr3R_7_14330001 chr3R_14330001 RAL-732 1397 chr3R 14426062 14426077 chr3R 14426166 14426181 4 104 5.5 7.5 6.5 0.5 119 chr3R 14426062 intron cv-c - chr3R 14426122 intron cv-c - chr3R 14426181 intron cv-c - chr3R_4_14425001 chr3R_14425001 RAL-732 1398 chr3R 14440726 14440755 chr3R 14440802 14440831 7 76 1.0 3.5 2.2 2.2 105 chr3R 14440726 intron cv-c - chr3R 14440778 intron cv-c - chr3R 14440831 intron cv-c - chr3R_7_14440001 chr3R_14440001 RAL-732 1399 chr3R 14458897 14458914 chr3R 14458978 14458995 5 81 4.0 6.0 5.0 0.8 98 chr3R 14458897 intron cv-c - chr3R 14458946 intron cv-c - chr3R 14458995 intron cv-c - chr3R_5_14455001 chr3R_14455001 RAL-732 1400 chr3R 14497204 14497223 chr3R 14497310 14497328 4 105 4.0 5.5 4.8 0.7 124 chr3R 14497204 intron CR44177 + chr3R 14497266 intron CR44177 + chr3R 14497328 intron CR44177 + chr3R_4_14495001 chr3R_14495001 RAL-732 1401 chr3R 14616277 14616305 chr3R 14616353 14616380 5 75 2.5 5.0 3.8 1.0 103 chr3R 14616277 intron CG14853 + chr3R 14616328 intron CG14853 + chr3R 14616380 intron CG14853 + chr3R_5_14615001 chr3R_14615001 RAL-732 1402 chr3R 14704387 14704416 chr3R 14704464 14704493 4 76 2.5 4.0 3.2 1.0 106 chr3R 14704387 intron kibra - chr3R 14704440 intron kibra - chr3R 14704493 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-732 1403 chr3R 14779070 14779094 chr3R 14779150 14779174 7 80 2.0 4.0 3.0 1.8 104 chr3R 14779070 intron jvl + chr3R 14779122 intron jvl + chr3R 14779174 intron jvl + chr3R_7_14775001 chr3R_14775001 RAL-732 1404 chr3R 14806716 14806748 chr3R 14806825 14806856 6 109 6.0 6.0 6.0 0.9 140 chr3R 14806716 3` UTR btsz - chr3R 14806786 3` UTR btsz - chr3R 14806856 3` UTR btsz - chr3R_6_14805001 chr3R_14805001 RAL-732 1405 chr3R 15078341 15078367 chr3R 15078421 15078447 5 80 3.5 6.0 4.8 0.9 106 chr3R 15078341 intergenic CG6974 - chr3R 15078394 intergenic CG6974 - chr3R 15078447 intergenic CG6974 - chr3R_5_15075001 chr3R_15075001 RAL-732 1406 chr3R 15114914 15114944 chr3R 15114991 15115021 5 77 2.5 1.0 1.8 1.8 107 chr3R 15114914 intron CG42788 - chr3R 15114968 intron CG42788 - chr3R 15115021 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-732 1407 chr3R 15132056 15132085 chr3R 15135116 15135145 Juan 4 3060 5.0 3.5 4.2 0.8 3089 chr3R 15132056 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135145 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-732 1408 chr3R 15162540 15162576 chr3R 15167308 15167343 F-element 11 4767 3.5 1.0 2.2 3.4 4803 chr3R 15162540 intron Gyc88E + chr3R 15164942 intron Gyc88E + chr3R 15167343 intron Gyc88E + chr3R_11_15160001 chr3R_15160001 RAL-732 1409 chr3R 15190655 15190681 chr3R 15190780 15190806 6 125 2.0 4.0 3.0 1.5 151 chr3R 15190655 3` UTR Gyc88E + chr3R 15190730 3` UTR Gyc88E + chr3R 15190806 3` UTR Gyc88E + chr3R_6_15190001 chr3R_15190001 RAL-732 1410 chr3R 15286987 15286988 chr3R 21907534 21907536 8 6620548 13.5 16.5 15.0 0.5 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 RAL-732 1411 chr3R 15416253 15416284 chr3R 15416329 15416364 5 79 6.0 6.0 6.0 0.7 111 chr3R 15416253 3` UTR Atx2 + chr3R 15416308 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-732 1412 chr3R 15528382 15528408 chr3R 15528483 15528507 11 100 7.5 9.5 8.5 1.2 125 chr3R 15528382 intergenic not near genes chr3R 15528444 intergenic not near genes chr3R 15528507 intergenic not near genes chr3R_11_15525001 chr3R_15525001 RAL-732 1413 chr3R 15601163 15601196 chr3R 15608685 15608718 412 12 7522 3.5 2.5 3.0 3.0 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-732 1414 chr3R 15608790 15608820 chr3R 15609017 15609049 4 228 6.0 2.0 4.0 0.8 259 chr3R 15608790 intergenic not near genes chr3R 15608920 intergenic not near genes chr3R 15609049 intergenic not near genes chr3R_4_15605001 chr3R_15605001 RAL-732 1415 chr3R 15618750 15618764 chr3R 15626224 15626238 blood 4 7474 0.0 2.5 1.2 1.8 7488 chr3R 15618750 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-732 1416 chr3R 15790263 15790380 chr3R 15790380 15790585 4 139 7.5 7.5 7.5 0.5 322 chr3R 15790263 exon c(3)G - chr3R 15790424 exon c(3)G - chr3R 15790585 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-732 1417 chr3R 15790843 15790872 chr3R 15790959 15790988 4 116 11.0 14.0 12.5 0.3 145 chr3R 15790843 exon c(3)G - chr3R 15790916 intron c(3)G - chr3R 15790988 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-732 1418 chr3R 15808542 15808555 chr3R 15808637 15808651 5 96 7.0 3.0 5.0 0.8 109 chr3R 15808542 intron alpha-Man-IIb + chr3R 15808596 intron alpha-Man-IIb + chr3R 15808651 intron alpha-Man-IIb + chr3R_5_15805001 chr3R_15805001 RAL-732 1419 chr3R 16024485 16024516 chr3R 16024561 16024592 9 76 9.5 7.0 8.2 1.0 107 chr3R 16024485 intergenic not near genes chr3R 16024538 intergenic not near genes chr3R 16024592 intergenic not near genes chr3R_9_16020001 chr3R_16020001 RAL-732 1420 chr3R 16189411 16189437 chr3R 16189812 16189840 invader4 6 403 1.5 0.0 0.8 3.3 429 chr3R 16189411 intron sra + chr3R 16189626 intron sra + chr3R 16189840 intron sra + chr3R_6_16185001 chr3R_16185001 RAL-732 1421 chr3R 16286636 16286649 chr3R 16286756 16286769 4 120 4.5 5.0 4.8 0.7 133 chr3R 16286636 intron gish + chr3R 16286702 intron gish + chr3R 16286769 intron gish + chr3R_4_16285001 chr3R_16285001 RAL-732 1422 chr3R 16320131 16320155 chr3R 16320279 16320303 8 149 5.5 6.5 6.0 1.1 172 chr3R 16320131 intron Sulf1 - chr3R 16320217 intron Sulf1 - chr3R 16320303 intron Sulf1 - chr3R_8_16320001 chr3R_16320001 RAL-732 1423 chr3R 16567549 16567559 chr3R 16567631 16567641 5 82 4.0 4.5 4.2 1.0 92 chr3R 16567549 intron CG42342 + chr3R 16567595 intron CG42342 + chr3R 16567641 intron CG42342 + chr3R_5_16565001 chr3R_16565001 RAL-732 1424 chr3R 16582907 16582915 chr3R 16582986 16582994 4 79 4.5 5.5 5.0 0.7 87 chr3R 16582907 intron Scp2 - chr3R 16582950 intron Scp2 - chr3R 16582994 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-732 1425 chr3R 16594752 16594769 chr3R 16594830 16594847 4 78 5.0 4.5 4.8 0.7 95 chr3R 16594752 5` UTR CG14892 + chr3R 16594800 5` UTR CG14892 + chr3R 16594847 5` UTR CG14892 + chr3R_4_16590001 chr3R_16590001 RAL-732 1426 chr3R 16669725 16669736 chr3R 16669815 16669826 4 90 7.0 10.0 8.5 0.4 101 chr3R 16669725 intron Ubx - chr3R 16669776 intron Ubx - chr3R 16669826 intron Ubx - chr3R_4_16665001 chr3R_16665001 RAL-732 1427 chr3R 16756328 16756345 chr3R 16762519 16762536 diver 9 6190 1.5 2.5 2.0 3.0 6208 chr3R 16756328 intron bxd - chr3R 16759432 intron bxd - chr3R 16762536 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-732 1428 chr3R 16865227 16865243 chr3R 16868734 16868750 6 3507 14.5 17.0 15.8 0.4 3523 chr3R 16865227 intron iab-8 - chr3R 16866988 intron iab-8 - chr3R 16868750 intron iab-8 - chr3R_6_16865001 chr3R_16865001 RAL-732 1429 chr3R 17121524 17121556 chr3R 17121719 17121751 4 195 5.0 3.0 4.0 0.8 227 chr3R 17121524 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_4_17120001 chr3R_17120001 RAL-732 1430 chr3R 17194412 17194427 chr3R 17194491 17194506 6 79 7.5 7.0 7.2 0.7 94 chr3R 17194412 intron Mur89F - chr3R 17194459 intron Mur89F - chr3R 17194506 intron Mur89F - chr3R_6_17190001 chr3R_17190001 RAL-732 1431 chr3R 17268676 17268702 chr3R 17268798 17268824 6 122 2.0 1.5 1.8 2.1 148 chr3R 17268676 intergenic not near genes chr3R 17268750 intergenic not near genes chr3R 17268824 intergenic not near genes chr3R_6_17265001 chr3R_17265001 RAL-732 1432 chr3R 17335163 17335180 chr3R 17335236 17335253 5 75 6.5 4.5 5.5 0.8 90 chr3R 17335163 intron beat-IIa - chr3R 17335208 intron beat-IIa - chr3R 17335253 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-732 1433 chr3R 17389054 17389054 chr3R 21907534 21907535 5 4518481 8.5 16.5 12.5 0.4 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-732 1434 chr3R 17461203 17461232 chr3R 17461285 17461313 6 82 0.5 3.0 1.8 2.1 110 chr3R 17461203 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461313 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-732 1435 chr3R 17521572 17521587 chr3R 17521732 17521747 5 160 3.0 8.5 5.8 0.7 175 chr3R 17521572 intergenic not near genes chr3R 17521660 intergenic not near genes chr3R 17521747 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-732 1436 chr3R 17638316 17638344 chr3R 17638802 17638830 roo 5 486 0.5 1.0 0.8 2.8 514 chr3R 17638316 intron CG43175 + chr3R 17638573 intron CG43175 + chr3R 17638830 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-732 1437 chr3R 17702346 17702371 chr3R 17702423 17702451 4 79 6.0 7.5 6.8 0.5 105 chr3R 17702346 intron osa - chr3R 17702398 intron osa - chr3R 17702451 intron osa - chr3R_4_17700001 chr3R_17700001 RAL-732 1438 chr3R 17743220 17743243 chr3R 17743301 17743324 5 81 3.5 3.5 3.5 1.1 104 chr3R 17743220 intron TyrRII + chr3R 17743272 intron TyrRII + chr3R 17743324 intron TyrRII + chr3R_5_17740001 chr3R_17740001 RAL-732 1439 chr3R 17748375 17748402 chr3R 17748487 17748514 6 111 7.5 2.5 5.0 1.0 139 chr3R 17748375 intergenic not near genes chr3R 17748444 intergenic not near genes chr3R 17748514 intergenic not near genes chr3R_6_17745001 chr3R_17745001 RAL-732 1440 chr3R 17818899 17818902 chr3R 17818977 17818981 4 78 8.5 5.5 7.0 0.5 82 chr3R 17818899 intron tinc + chr3R 17818940 intron tinc + chr3R 17818981 intron tinc + chr3R_4_17815001 chr3R_17815001 RAL-732 1441 chr3R 17823211 17823233 chr3R 17823296 17823318 5 85 3.5 3.5 3.5 1.1 107 chr3R 17823211 intron tinc + chr3R 17823264 intron tinc + chr3R 17823318 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-732 1442 chr3R 17925850 17925889 chr3R 17927317 17927356 hobo 10 1467 2.0 5.5 3.8 2.1 1506 chr3R 17925850 intron cpo + chr3R 17926603 intron cpo + chr3R 17927356 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-732 1443 chr3R 17964230 17964260 chr3R 17964335 17964366 5 105 4.0 6.5 5.2 0.8 136 chr3R 17964230 intron cpo + chr3R 17964298 intron cpo + chr3R 17964366 intron cpo + chr3R_5_17960001 chr3R_17960001 RAL-732 1444 chr3R 18061588 18061613 chr3R 18063156 18063181 F-element 4 1568 1.5 3.0 2.2 1.2 1593 chr3R 18061588 intergenic not near genes chr3R 18062384 intergenic not near genes chr3R 18063181 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-732 1445 chr3R 18281400 18281435 chr3R 18281476 18281511 6 76 3.5 3.5 3.5 1.3 111 chr3R 18281400 intron eIF-1A + chr3R 18281456 intron eIF-1A + chr3R 18281511 intron eIF-1A + chr3R_6_18280001 chr3R_18280001 RAL-732 1446 chr3R 18462979 18462995 chr3R 18463059 18463074 5 80 3.5 2.0 2.8 1.3 95 chr3R 18462979 intron fru - chr3R 18463026 intron fru - chr3R 18463074 intron fru - chr3R_5_18460001 chr3R_18460001 RAL-732 1447 chr3R 18501596 18501623 chr3R 18501677 18501704 4 81 5.5 8.0 6.8 0.5 108 chr3R 18501596 intron fru - chr3R 18501650 intron fru - chr3R 18501704 intron fru - chr3R_4_18500001 chr3R_18500001 RAL-732 1448 chr3R 18606502 18606527 chr3R 18610733 18610749 F-element 5 4230 3.5 1.5 2.5 1.4 4247 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608626 intron,intron qin +,CG14304 - chr3R 18610749 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-732 1449 chr3R 18730024 18730033 chr3R 18730100 18730109 6 76 4.5 8.0 6.2 0.8 85 chr3R 18730024 intron Cha + chr3R 18730066 intron Cha + chr3R 18730109 exon Cha + chr3R_6_18730001 chr3R_18730001 RAL-732 1450 chr3R 18766777 18766807 chr3R 18766855 18766884 8 78 10.0 8.5 9.2 0.8 107 chr3R 18766777 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_8_18765001 chr3R_18765001 RAL-732 1451 chr3R 18781691 18781721 chr3R 18781767 18781796 5 76 1.5 2.0 1.8 1.8 105 chr3R 18781691 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781796 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-732 1452 chr3R 18788904 18788932 chr3R 18788985 18789013 11 81 8.5 8.0 8.2 1.2 109 chr3R 18788904 intron CG7720 - chr3R 18788958 intron CG7720 - chr3R 18789013 intron CG7720 - chr3R_11_18785001 chr3R_18785001 RAL-732 1453 chr3R 18808488 18808507 chr3R 18808565 18808584 5 77 5.0 7.0 6.0 0.7 96 chr3R 18808488 intron CG18208 - chr3R 18808536 intron CG18208 - chr3R 18808584 intron CG18208 - chr3R_5_18805001 chr3R_18805001 RAL-732 1454 chr3R 18812080 18812101 chr3R 18812155 18812179 9 77 1.5 3.5 2.5 2.6 99 chr3R 18812080 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812179 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-732 1455 chr3R 18916204 18916228 chr3R 18916458 18916483 5 255 2.0 1.0 1.5 2.0 279 chr3R 18916204 intron Xrp1 + chr3R 18916344 intron Xrp1 + chr3R 18916483 intron Xrp1 + chr3R_5_18915001 chr3R_18915001 RAL-732 1456 chr3R 19109228 19109244 chr3R 19109340 19109356 4 112 2.5 6.5 4.5 0.7 128 chr3R 19109228 intron CG6040 + chr3R 19109292 intron CG6040 + chr3R 19109356 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-732 1457 chr3R 19117064 19117072 chr3R 19117208 19117216 4 144 3.5 2.0 2.8 1.1 152 chr3R 19117064 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117216 intron CG6040 + chr3R_4_19115001 chr3R_19115001 RAL-732 1458 chr3R 19226705 19226739 chr3R 19230877 19230910 5 4172 6.0 18.5 12.2 0.4 4205 chr3R 19226705 intergenic vib -,CG11703 - chr3R 19228808 exon CG5250 - chr3R 19230910 exon unc79 - chr3R_5_19225001 chr3R_19225001 RAL-732 1459 chr3R 19294688 19294713 chr3R 19294889 19294917 4 203 4.5 2.0 3.2 1.0 229 chr3R 19294688 intergenic not near genes chr3R 19294802 intergenic not near genes chr3R 19294917 intergenic not near genes chr3R_4_19290001 chr3R_19290001 RAL-732 1460 chr3R 19340405 19340427 chr3R 19340482 19340504 4 77 7.0 6.5 6.8 0.5 99 chr3R 19340405 intergenic not near genes chr3R 19340454 intergenic not near genes chr3R 19340504 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-732 1461 chr3R 19474874 19474897 chr3R 19475009 19475032 5 135 9.0 8.5 8.8 0.5 158 chr3R 19474874 intron Dys + chr3R 19474953 intron Dys + chr3R 19475032 intron Dys + chr3R_5_19470001 chr3R_19470001 RAL-732 1462 chr3R 19604678 19604705 chr3R 19604811 19604838 4 133 3.0 5.5 4.2 0.8 160 chr3R 19604678 exon CG7342 + chr3R 19604758 intron CG7342 + chr3R 19604838 intron CG7342 + chr3R_4_19600001 chr3R_19600001 RAL-732 1463 chr3R 19668643 19668681 chr3R 19668720 19668758 13 76 5.5 5.0 5.2 2.1 115 chr3R 19668643 exon CG7432 + chr3R 19668700 exon CG7432 + chr3R 19668758 exon CG7432 + chr3R_13_19665001 chr3R_19665001 RAL-732 1464 chr3R 19703200 19703234 chr3R 19703360 19703387 6 158 9.0 12.5 10.8 0.5 187 chr3R 19703200 intergenic not near genes chr3R 19703294 intergenic not near genes chr3R 19703387 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-732 1465 chr3R 19716221 19716245 chr3R 19716298 19716322 5 77 2.5 2.0 2.2 1.6 101 chr3R 19716221 intergenic CG34286 - chr3R 19716272 intergenic CG34286 - chr3R 19716322 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-732 1466 chr3R 20020151 20020180 chr3R 20020293 20020320 6 142 7.0 7.5 7.2 0.7 169 chr3R 20020151 intron CG4433 - chr3R 20020236 intron CG4433 - chr3R 20020320 intron CG4433 - chr3R_6_20020001 chr3R_20020001 RAL-732 1467 chr3R 20059208 20059500 chr3R 20059288 20059577 9 79 2.5 3.0 2.8 2.4 369 chr3R 20059208 intron,3` UTR CG4390 -,mdlc + chr3R 20059392 intron CG4390 - chr3R 20059577 exon CG4390 - chr3R_9_20055001 chr3R_20055001 RAL-732 1468 chr3R 20060630 20060643 chr3R 20060713 20060726 7 83 6.5 5.5 6.0 1.0 96 chr3R 20060630 intergenic not near genes chr3R 20060678 intergenic not near genes chr3R 20060726 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-732 1469 chr3R 20109560 20109570 chr3R 20114766 20114776 copia 4 5206 1.0 3.5 2.2 1.2 5216 chr3R 20109560 intergenic not near genes chr3R 20112168 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-732 1470 chr3R 20124571 20124598 chr3R 20124658 20124685 5 87 6.5 7.5 7.0 0.6 114 chr3R 20124571 intergenic not near genes chr3R 20124628 intergenic not near genes chr3R 20124685 intergenic not near genes chr3R_5_20120001 chr3R_20120001 RAL-732 1471 chr3R 20184589 20184602 chr3R 20184678 20184691 4 89 7.5 7.0 7.2 0.5 102 chr3R 20184589 intergenic not near genes chr3R 20184640 intergenic not near genes chr3R 20184691 intergenic not near genes chr3R_4_20180001 chr3R_20180001 RAL-732 1472 chr3R 20197123 20197150 chr3R 20197200 20197227 4 77 2.5 0.5 1.5 1.6 104 chr3R 20197123 intergenic not near genes chr3R 20197175 intergenic not near genes chr3R 20197227 intergenic not near genes chr3R_4_20195001 chr3R_20195001 RAL-732 1473 chr3R 20205568 20205592 chr3R 20205690 20205714 8 122 2.0 1.0 1.5 3.2 146 chr3R 20205568 intron Nlg4 + chr3R 20205641 intron Nlg4 + chr3R 20205714 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-732 1474 chr3R 20331004 20331027 chr3R 20331490 20331513 roo 4 486 3.0 1.5 2.2 1.2 509 chr3R 20331004 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331513 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-732 1475 chr3R 20467085 20467114 chr3R 20467157 20467190 4 75 11.5 11.5 11.5 0.3 105 chr3R 20467085 intron Gfrl - chr3R 20467138 intron Gfrl - chr3R 20467190 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-732 1476 chr3R 20512352 20512369 chr3R 20512435 20512452 4 83 2.0 3.0 2.5 1.1 100 chr3R 20512352 5` UTR CG4288 - chr3R 20512402 5` UTR CG4288 - chr3R 20512452 5` UTR CG4288 - chr3R_4_20510001 chr3R_20510001 RAL-732 1477 chr3R 20707744 20707767 chr3R 20707959 20707982 6 215 1.0 4.0 2.5 1.7 238 chr3R 20707744 intron Oamb - chr3R 20707863 intron Oamb - chr3R 20707982 intron Oamb - chr3R_6_20705001 chr3R_20705001 RAL-732 1478 chr3R 20728800 20728813 chr3R 20729382 20729395 7 582 2.0 8.0 5.0 1.2 595 chr3R 20728800 intergenic not near genes chr3R 20729098 intergenic not near genes chr3R 20729395 intergenic not near genes chr3R_7_20725001 chr3R_20725001 RAL-732 1479 chr3R 20787438 20787458 chr3R 20787529 20787549 6 91 1.5 3.5 2.5 1.7 111 chr3R 20787438 intron Syp + chr3R 20787494 intron Syp + chr3R 20787549 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-732 1480 chr3R 20869176 20869198 chr3R 20869255 20869277 7 79 4.0 4.5 4.2 1.3 101 chr3R 20869176 intergenic not near genes chr3R 20869226 intergenic not near genes chr3R 20869277 intergenic not near genes chr3R_7_20865001 chr3R_20865001 RAL-732 1481 chr3R 20942821 20942843 chr3R 20942897 20942918 6 76 3.0 3.0 3.0 1.5 97 chr3R 20942821 intron CG31191 - chr3R 20942870 intron CG31191 - chr3R 20942918 intron CG31191 - chr3R_6_20940001 chr3R_20940001 RAL-732 1482 chr3R 21108039 21108065 chr3R 21108300 21108325 6 260 1.0 1.0 1.0 3.0 286 chr3R 21108039 intergenic Sec15 -,rtet + chr3R 21108182 intergenic Sec15 -,rtet + chr3R 21108325 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-732 1483 chr3R 21141675 21141701 chr3R 21150154 21150182 Tirant 6 8480 1.5 4.5 3.0 1.5 8507 chr3R 21141675 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150182 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-732 1484 chr3R 21159113 21159123 chr3R 21159216 21159226 6 103 1.0 0.0 0.5 4.0 113 chr3R 21159113 intron SNF4Agamma + chr3R 21159170 intron SNF4Agamma + chr3R 21159226 intron SNF4Agamma + chr3R_6_21155001 chr3R_21155001 RAL-732 1485 chr3R 21163260 21163278 chr3R 21163338 21163356 6 78 2.0 2.0 2.0 2.0 96 chr3R 21163260 intron SNF4Agamma + chr3R 21163308 intron SNF4Agamma + chr3R 21163356 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-732 1486 chr3R 21176805 21176836 chr3R 21176888 21176918 6 83 2.5 4.0 3.2 1.4 113 chr3R 21176805 intron SNF4Agamma + chr3R 21176862 intron SNF4Agamma + chr3R 21176918 intron SNF4Agamma + chr3R_6_21175001 chr3R_21175001 RAL-732 1487 chr3R 21240456 21240479 chr3R 21240548 21240571 9 92 0.5 2.0 1.2 4.1 115 chr3R 21240456 intergenic not near genes chr3R 21240514 intergenic not near genes chr3R 21240571 intergenic not near genes chr3R_9_21240001 chr3R_21240001 RAL-732 1488 chr3R 21274381 21274615 chr3R 21274475 21274697 4 88 8.5 3.5 6.0 0.6 316 chr3R 21274381 3` UTR CG3301 - chr3R 21274539 3` UTR CG3301 - chr3R 21274697 intron CG3301 - chr3R_4_21270001 chr3R_21270001 RAL-732 1489 chr3R 21322975 21322992 chr3R 21323054 21323071 5 79 3.0 1.5 2.2 1.6 96 chr3R 21322975 intron CG16791 - chr3R 21323023 intron CG16791 - chr3R 21323071 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-732 1490 chr3R 21408857 21408879 chr3R 21408936 21408958 6 79 3.0 6.0 4.5 1.1 101 chr3R 21408857 intergenic CheB93b + chr3R 21408908 intergenic CheB93b + chr3R 21408958 intergenic CheB93b + chr3R_6_21405001 chr3R_21405001 RAL-732 1491 chr3R 21472016 21472028 chr3R 21472097 21472109 4 81 4.5 4.0 4.2 0.8 93 chr3R 21472016 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472109 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-732 1492 chr3R 21496382 21496414 chr3R 21496457 21496491 5 76 12.5 10.5 11.5 0.4 109 chr3R 21496382 intergenic not near genes chr3R 21496436 intergenic not near genes chr3R 21496491 intergenic not near genes chr3R_5_21495001 chr3R_21495001 RAL-732 1493 chr3R 21518253 21518270 chr3R 21518337 21518353 5 84 0.0 3.0 1.5 2.0 100 chr3R 21518253 intergenic not near genes chr3R 21518303 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-732 1494 chr3R 21520008 21520138 chr3R 21520109 21520232 5 95 0.5 0.5 0.5 3.3 224 chr3R 21520008 intergenic not near genes chr3R 21520120 intergenic not near genes chr3R 21520232 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-732 1495 chr3R 21586426 21586453 chr3R 21586509 21586537 5 83 6.0 8.0 7.0 0.6 111 chr3R 21586426 intron InR - chr3R 21586482 intron InR - chr3R 21586537 intron InR - chr3R_5_21585001 chr3R_21585001 RAL-732 1496 chr3R 21609007 21609040 chr3R 21611640 21611674 NOF 6 2634 1.5 6.0 3.8 1.2 2667 chr3R 21609007 intron InR - chr3R 21610340 intron InR - chr3R 21611674 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-732 1497 chr3R 21628002 21628033 chr3R 21628127 21628158 9 124 3.5 4.0 3.8 1.9 156 chr3R 21628002 intron E2f - chr3R 21628080 intron E2f - chr3R 21628158 intron E2f - chr3R_9_21625001 chr3R_21625001 RAL-732 1498 chr3R 21761125 21761154 chr3R 21768513 21768546 mdg1 6 7391 4.5 3.5 4.0 1.2 7421 chr3R 21761125 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-732 1499 chr3R 21784859 21784887 chr3R 21784956 21784983 4 96 5.5 5.0 5.2 0.6 124 chr3R 21784859 3` UTR,3` UTR CASK -,CRG - chr3R 21784921 3` UTR,3` UTR CASK -,CRG - chr3R 21784983 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-732 1500 chr3R 21800493 21800512 chr3R 21800578 21800596 4 85 5.5 5.5 5.5 0.6 103 chr3R 21800493 intron CASK - chr3R 21800544 intron CASK - chr3R 21800596 intron CASK - chr3R_4_21800001 chr3R_21800001 RAL-732 1501 chr3R 8339246 8339247 chr3R 21907534 21907534 7 13568288 14.0 16.5 15.2 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-732 1502 chr3R 9620954 9620959 chr3R 21907534 21907534 7 12286578 12.0 16.5 14.2 0.5 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-732 1503 chr3R 13104419 13104420 chr3R 21907534 21907534 6 8803114 9.5 16.5 13.0 0.4 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_6_17505001 chr3R_17505001 RAL-732 1504 chr3R 17389054 17389054 chr3R 21907534 21907534 10 4518480 8.5 16.5 12.5 0.7 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_10_19645001 chr3R_19645001 RAL-732 1505 chr3R 21337429 21337429 chr3R 21907534 21907534 6 570105 9.0 16.5 12.8 0.4 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-732 1506 chr3R 21907534 21907534 chr3R 24389465 24389465 6 2481931 16.5 2.0 9.2 0.6 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-732 1507 chr3R 21907534 21907534 chr3R 26659332 26659337 4 4751800 16.5 13.5 15.0 0.2 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-732 1508 chr3R 21907534 21907534 chr3R 28831801 28831803 39 6924268 16.5 14.5 15.5 2.4 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-732 1509 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 14.0 16.5 15.2 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-732 1510 chr3R 9620954 9620956 chr3R 21907535 21907535 6 12286580 12.5 16.5 14.5 0.4 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-732 1511 chr3R 13104419 13104420 chr3R 21907535 21907535 5 8803115 9.5 16.5 13.0 0.4 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-732 1512 chr3R 17389054 17389054 chr3R 21907535 21907535 6 4518481 8.5 16.5 12.5 0.4 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-732 1513 chr3R 19457915 19457919 chr3R 21907535 21907535 5 2449619 6.0 16.5 11.2 0.4 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-732 1514 chr3R 20177845 20177845 chr3R 21907535 21907535 5 1729690 8.0 16.5 12.2 0.4 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_5_21040001 chr3R_21040001 RAL-732 1515 chr3R 21907535 21907535 chr3R 24389465 24389465 4 2481930 16.5 2.0 9.2 0.4 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-732 1516 chr3R 21907535 21907535 chr3R 28831797 28831804 78 6924266 16.5 14.0 15.2 4.8 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_78_25365001 chr3R_25365001 RAL-732 1517 chr3R 20177845 20177845 chr3R 21907536 21907536 4 1729691 8.0 16.5 12.2 0.3 1729691 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907536 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-732 1518 chr3R 21907536 21907536 chr3R 28831801 28831803 71 6924266 16.5 14.5 15.5 4.3 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_71_25365001 chr3R_25365001 RAL-732 1519 chr3R 21907536 21907536 chr3R 29013339 29013340 7 7105804 16.5 16.0 16.2 0.4 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-732 1520 chr3R 21924010 21924040 chr3R 21924099 21924127 4 89 4.0 3.0 3.5 0.9 117 chr3R 21924010 intergenic not near genes chr3R 21924068 intergenic not near genes chr3R 21924127 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-732 1521 chr3R 21928973 21929002 chr3R 21929063 21929093 5 91 2.5 7.0 4.8 0.9 120 chr3R 21928973 intergenic not near genes chr3R 21929033 intergenic not near genes chr3R 21929093 intergenic not near genes chr3R_5_21925001 chr3R_21925001 RAL-732 1522 chr3R 22179087 22179125 chr3R 22179164 22179202 10 76 4.5 8.0 6.2 1.4 115 chr3R 22179087 intron SKIP + chr3R 22179144 intron SKIP + chr3R 22179202 intron SKIP + chr3R_10_22175001 chr3R_22175001 RAL-732 1523 chr3R 22234682 22234714 chr3R 22236001 22236033 pogo 5 1319 4.5 4.0 4.2 1.0 1351 chr3R 22234682 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236033 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-732 1524 chr3R 22239491 22239523 chr3R 22248551 22248583 roo 4 9060 2.5 2.0 2.2 1.2 9092 chr3R 22239491 intron SKIP + chr3R 22244037 intron SKIP + chr3R 22248583 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-732 1525 chr3R 22272350 22272371 chr3R 22272432 22272453 7 81 2.0 2.0 2.0 2.3 103 chr3R 22272350 intron SKIP + chr3R 22272402 intron SKIP + chr3R 22272453 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-732 1526 chr3R 22346177 22346190 chr3R 22346263 22346276 4 86 5.5 2.0 3.8 0.8 99 chr3R 22346177 intergenic not near genes chr3R 22346226 intergenic not near genes chr3R 22346276 intergenic not near genes chr3R_4_22345001 chr3R_22345001 RAL-732 1527 chr3R 22360228 22360257 chr3R 22360355 22360384 8 127 3.0 4.5 3.8 1.7 156 chr3R 22360228 3` UTR Sar1 + chr3R 22360306 3` UTR Sar1 + chr3R 22360384 3` UTR Sar1 + chr3R_8_22360001 chr3R_22360001 RAL-732 1528 chr3R 22450541 22450576 chr3R 22453181 22453216 NOF 11 2640 2.0 2.5 2.2 3.4 2675 chr3R 22450541 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_11_22450001 chr3R_22450001 RAL-732 1529 chr3R 22516408 22516425 chr3R 22516501 22516516 5 92 4.5 10.0 7.2 0.6 108 chr3R 22516408 intron Octbeta1R + chr3R 22516462 intron Octbeta1R + chr3R 22516516 intron Octbeta1R + chr3R_5_22515001 chr3R_22515001 RAL-732 1530 chr3R 22526299 22526332 chr3R 22526380 22526412 5 81 9.5 8.0 8.8 0.5 113 chr3R 22526299 intron CG5346 - chr3R 22526356 intron CG5346 - chr3R 22526412 intron CG5346 - chr3R_5_22525001 chr3R_22525001 RAL-732 1531 chr3R 22648328 22648351 chr3R 22648407 22648430 6 79 3.5 0.0 1.8 2.1 102 chr3R 22648328 intron wake + chr3R 22648379 intron wake + chr3R 22648430 intron wake + chr3R_6_22645001 chr3R_22645001 RAL-732 1532 chr3R 22769089 22769122 chr3R 22769166 22769199 4 77 4.0 4.0 4.0 0.8 110 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_4_22765001 chr3R_22765001 RAL-732 1533 chr3R 22846791 22846822 chr3R 22847011 22847043 7 220 5.0 9.0 7.0 0.9 252 chr3R 22846791 intergenic CG4704 - chr3R 22846917 intergenic not near genes chr3R 22847043 intergenic not near genes chr3R_7_22845001 chr3R_22845001 RAL-732 1534 chr3R 22889012 22889048 chr3R 22889089 22889124 12 77 6.5 5.5 6.0 1.7 112 chr3R 22889012 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889124 intergenic not near genes chr3R_12_22885001 chr3R_22885001 RAL-732 1535 chr3R 23075417 23075429 chr3R 23075500 23075512 4 83 7.0 8.5 7.8 0.5 95 chr3R 23075417 intron CG13830 - chr3R 23075464 intron CG13830 - chr3R 23075512 intron CG13830 - chr3R_4_23075001 chr3R_23075001 RAL-732 1536 chr3R 23090403 23090437 chr3R 23090486 23090520 9 83 7.5 7.0 7.2 1.1 117 chr3R 23090403 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090520 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-732 1537 chr3R 23246005 23246022 chr3R 23246087 23246103 4 82 1.0 4.0 2.5 1.1 98 chr3R 23246005 intron CG4467 - chr3R 23246054 intron CG4467 - chr3R 23246103 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-732 1538 chr3R 23335434 23335465 chr3R 23335512 23335543 4 78 4.0 5.0 4.5 0.7 109 chr3R 23335434 intron pnt - chr3R 23335488 intron pnt - chr3R 23335543 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-732 1539 chr3R 23421974 23422010 chr3R 23422059 23422095 7 85 4.0 2.0 3.0 1.8 121 chr3R 23421974 intron CG4374 - chr3R 23422034 intron CG4374 - chr3R 23422095 intron CG4374 - chr3R_7_23420001 chr3R_23420001 RAL-732 1540 chr3R 23446287 23446300 chr3R 23446365 23446378 4 78 11.0 9.5 10.2 0.4 91 chr3R 23446287 intron CG4374 - chr3R 23446332 intron CG4374 - chr3R 23446378 intron CG4374 - chr3R_4_23445001 chr3R_23445001 RAL-732 1541 chr3R 23564441 23564470 chr3R 23564585 23564614 8 144 4.5 6.0 5.2 1.3 173 chr3R 23564441 intron beat-IV + chr3R 23564528 intron beat-IV + chr3R 23564614 intron beat-IV + chr3R_8_23560001 chr3R_23560001 RAL-732 1542 chr3R 23650248 23650276 chr3R 23650372 23650400 6 124 4.0 0.0 2.0 2.0 152 chr3R 23650248 intron CG31145 - chr3R 23650324 intron CG31145 - chr3R 23650400 intron CG31145 - chr3R_6_23650001 chr3R_23650001 RAL-732 1543 chr3R 23684695 23684722 chr3R 23685181 23685207 roo 8 486 4.0 4.5 4.2 1.5 512 chr3R 23684695 exon CG18754 + chr3R 23684951 intron CG18754 + chr3R 23685207 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-732 1544 chr3R 23764110 23764127 chr3R 23764187 23764205 7 76 13.0 7.5 10.2 0.6 95 chr3R 23764110 5` UTR Lsd-1 + chr3R 23764158 5` UTR Lsd-1 + chr3R 23764205 5` UTR Lsd-1 + chr3R_7_23760001 chr3R_23760001 RAL-732 1545 chr3R 23783995 23784015 chr3R 23784105 23784125 4 110 8.5 7.0 7.8 0.5 130 chr3R 23783995 intron mbc + chr3R 23784060 intron mbc + chr3R 23784125 intron mbc + chr3R_4_23780001 chr3R_23780001 RAL-732 1546 chr3R 23835406 23835435 chr3R 23844556 23844584 roo 6 9150 1.5 1.5 1.5 2.4 9178 chr3R 23835406 intron CG34355 + chr3R 23839995 intron CG34355 + chr3R 23844584 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-732 1547 chr3R 23888087 23888106 chr3R 23888171 23888192 5 86 4.5 6.0 5.2 0.8 105 chr3R 23888087 intron Pli - chr3R 23888140 intron Pli - chr3R 23888192 intron Pli - chr3R_5_23885001 chr3R_23885001 RAL-732 1548 chr3R 23907798 23907822 chr3R 23907886 23907910 5 88 2.0 3.0 2.5 1.4 112 chr3R 23907798 intron sba - chr3R 23907854 intron sba - chr3R 23907910 intron sba - chr3R_5_23905001 chr3R_23905001 RAL-732 1549 chr3R 23944910 23944936 chr3R 23944995 23945021 14 85 3.5 1.5 2.5 4.0 111 chr3R 23944910 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_14_23940001 chr3R_23940001 RAL-732 1550 chr3R 24072083 24072117 chr3R 24072521 24072555 jockey 11 437 5.5 3.5 4.5 2.0 472 chr3R 24072083 intron 4EHP - chr3R 24072319 intron 4EHP - chr3R 24072555 intron 4EHP - chr3R_11_24070001 chr3R_24070001 RAL-732 1551 chr3R 24076913 24076949 chr3R 24078380 24078416 hobo 5 1467 2.5 1.5 2.0 1.7 1503 chr3R 24076913 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-732 1552 chr3R 24171219 24171250 chr3R 24171317 24171348 4 98 1.0 0.0 0.5 2.7 129 chr3R 24171219 intergenic not near genes chr3R 24171284 intergenic not near genes chr3R 24171348 intergenic not near genes chr3R_4_24170001 chr3R_24170001 RAL-732 1553 chr3R 24199741 24199773 chr3R 24199820 24199853 7 80 4.0 5.5 4.8 1.2 112 chr3R 24199741 intron twin - chr3R 24199797 intron twin - chr3R 24199853 intron twin - chr3R_7_24195001 chr3R_24195001 RAL-732 1554 chr3R 24351736 24351763 chr3R 24351813 24351840 5 77 16.0 14.5 15.2 0.3 104 chr3R 24351736 intron CG6454 + chr3R 24351788 intron CG6454 + chr3R 24351840 intron CG6454 + chr3R_5_24350001 chr3R_24350001 RAL-732 1555 chr3R 21907534 21907535 chr3R 24389465 24389465 6 2481930 16.5 2.0 9.2 0.6 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-732 1556 chr3R 24433476 24433499 chr3R 24433555 24433578 7 79 9.0 9.0 9.0 0.7 102 chr3R 24433476 intron nAChRalpha1 - chr3R 24433527 intron nAChRalpha1 - chr3R 24433578 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-732 1557 chr3R 24467872 24467888 chr3R 24467952 24467968 5 79 5.0 8.5 6.8 0.6 96 chr3R 24467872 intergenic not near genes chr3R 24467920 intergenic not near genes chr3R 24467968 intergenic not near genes chr3R_5_24465001 chr3R_24465001 RAL-732 1558 chr3R 24483535 24483568 chr3R 24483612 24483645 10 78 3.0 4.0 3.5 2.2 110 chr3R 24483535 intergenic not near genes chr3R 24483590 intergenic not near genes chr3R 24483645 intergenic not near genes chr3R_10_24480001 chr3R_24480001 RAL-732 1559 chr3R 24624386 24624394 chr3R 24624475 24624483 5 89 3.5 6.0 4.8 0.9 97 chr3R 24624386 intron Syx18 - chr3R 24624434 intron Syx18 - chr3R 24624483 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-732 1560 chr3R 24670068 24670181 chr3R 24670178 24670265 5 94 0.5 0.5 0.5 3.3 197 chr3R 24670068 intron slo + chr3R 24670166 intron slo + chr3R 24670265 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-732 1561 chr3R 24730090 24730111 chr3R 24732468 24732489 Doc 4 2378 4.5 1.0 2.8 1.1 2399 chr3R 24730090 intron tok + chr3R 24731290 intron tok + chr3R 24732489 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-732 1562 chr3R 24735976 24736234 chr3R 24736052 24736348 5 83 3.0 6.5 4.8 0.9 372 chr3R 24735976 intron tok + chr3R 24736162 intron tok + chr3R 24736348 intron tok + chr3R_5_24735001 chr3R_24735001 RAL-732 1563 chr3R 24893468 24893482 chr3R 24893548 24893562 5 80 4.0 4.0 4.0 1.0 94 chr3R 24893468 intron CG31121 - chr3R 24893515 intron CG31121 - chr3R 24893562 intron CG31121 - chr3R_5_24890001 chr3R_24890001 RAL-732 1564 chr3R 24927126 24927148 chr3R 24931916 24931937 Doc 5 4790 7.5 3.5 5.5 0.8 4811 chr3R 24927126 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931937 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-732 1565 chr3R 25004905 25004914 chr3R 25004988 25004997 5 83 0.0 5.0 2.5 1.4 92 chr3R 25004905 intron tnc + chr3R 25004951 intron tnc + chr3R 25004997 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-732 1566 chr3R 25018260 25018290 chr3R 25018337 25018367 8 77 8.0 8.5 8.2 0.9 107 chr3R 25018260 exon tnc + chr3R 25018314 exon tnc + chr3R 25018367 exon tnc + chr3R_8_25015001 chr3R_25015001 RAL-732 1567 chr3R 25027539 25027570 chr3R 25027752 25027783 5 213 4.0 4.5 4.2 1.0 244 chr3R 25027539 intron Hr96 + chr3R 25027661 intron Hr96 + chr3R 25027783 intron Hr96 + chr3R_5_25025001 chr3R_25025001 RAL-732 1568 chr3R 25072761 25072793 chr3R 25072853 25072884 9 92 2.5 3.5 3.0 2.2 123 chr3R 25072761 3` UTR CG9996 - chr3R 25072822 3` UTR CG9996 - chr3R 25072884 3` UTR CG9996 - chr3R_9_25070001 chr3R_25070001 RAL-732 1569 chr3R 25159507 25159536 chr3R 25159595 25159624 6 88 2.5 4.5 3.5 1.3 117 chr3R 25159507 intergenic not near genes chr3R 25159566 intergenic not near genes chr3R 25159624 intergenic not near genes chr3R_6_25155001 chr3R_25155001 RAL-732 1570 chr3R 25236190 25236211 chr3R 25236329 25236350 5 139 4.5 7.5 6.0 0.7 160 chr3R 25236190 intergenic not near genes chr3R 25236270 intergenic not near genes chr3R 25236350 intergenic not near genes chr3R_5_25235001 chr3R_25235001 RAL-732 1571 chr3R 25239233 25239248 chr3R 25239344 25239359 8 111 5.5 6.5 6.0 1.1 126 chr3R 25239233 intergenic CG11852 + chr3R 25239296 intergenic CG11852 + chr3R 25239359 intergenic CG11852 + chr3R_8_25235001 chr3R_25235001 RAL-732 1572 chr3R 25267734 25267753 chr3R 25267847 25267869 6 116 2.5 3.0 2.8 1.6 135 chr3R 25267734 3` UTR,intron RIOK2 +,CR45214 - chr3R 25267802 intron CR45214 - chr3R 25267869 intron CR45214 - chr3R_6_25265001 chr3R_25265001 RAL-732 1573 chr3R 25272044 25272067 chr3R 25272403 25272426 4 359 3.0 10.5 6.8 0.5 382 chr3R 25272044 3` UTR,exon CG11889 +,CG11891 + chr3R 25272235 3` UTR,exon CG11889 +,CG11891 + chr3R 25272426 3` UTR,exon CG11889 +,CG11891 + chr3R_4_25270001 chr3R_25270001 RAL-732 1574 chr3R 25368483 25368499 chr3R 25368601 25368617 4 118 1.5 0.0 0.8 2.2 134 chr3R 25368483 intron Fur1 - chr3R 25368550 intron Fur1 - chr3R 25368617 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-732 1575 chr3R 25440806 25440983 chr3R 25440894 25441060 4 82 4.0 3.5 3.8 0.8 254 chr3R 25440806 intron Fur1 - chr3R 25440933 intron Fur1 - chr3R 25441060 intron Fur1 - chr3R_4_25440001 chr3R_25440001 RAL-732 1576 chr3R 25512391 25512420 chr3R 25512470 25512499 9 79 5.5 7.5 6.5 1.2 108 chr3R 25512391 intergenic not near genes chr3R 25512445 intergenic not near genes chr3R 25512499 intergenic not near genes chr3R_9_25510001 chr3R_25510001 RAL-732 1577 chr3R 25612842 25612924 chr3R 25612949 25613001 7 98 3.0 3.0 3.0 1.8 159 chr3R 25612842 intron Npl4 - chr3R 25612922 intron Npl4 - chr3R 25613001 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-732 1578 chr3R 25651036 25651068 chr3R 25651115 25651147 5 79 12.5 13.0 12.8 0.4 111 chr3R 25651036 intergenic mir-92b + chr3R 25651092 intergenic mir-92b + chr3R 25651147 intergenic mir-92b + chr3R_5_25650001 chr3R_25650001 RAL-732 1579 chr3R 25689128 25689163 chr3R 25689236 25689271 9 108 5.0 4.0 4.5 1.6 143 chr3R 25689128 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_9_25685001 chr3R_25685001 RAL-732 1580 chr3R 25709949 25709960 chr3R 25710029 25710042 5 81 15.5 17.0 16.2 0.3 93 chr3R 25709949 intron LpR2 - chr3R 25709996 intron LpR2 - chr3R 25710042 exon LpR2 - chr3R_5_25705001 chr3R_25705001 RAL-732 1581 chr3R 25709781 25709789 chr3R 25715770 25715778 4 5989 25.0 14.5 19.8 0.2 5997 chr3R 25709781 intron LpR2 - chr3R 25712780 intron LpR2 - chr3R 25715778 intron LpR2 - chr3R_4_25710001 chr3R_25710001 RAL-732 1582 chr3R 25832688 25832718 chr3R 25841870 25841900 roo 9 9182 4.5 3.5 4.0 1.8 9212 chr3R 25832688 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-732 1583 chr3R 25847692 25847715 chr3R 25847856 25847879 5 164 4.0 5.0 4.5 0.9 187 chr3R 25847692 intergenic CR45656 -,CR45657 + chr3R 25847786 intergenic CR45656 -,CR45657 + chr3R 25847879 intergenic CR45657 +,CR45656 - chr3R_5_25845001 chr3R_25845001 RAL-732 1584 chr3R 25936413 25936445 chr3R 25936513 25936545 10 100 6.0 7.5 6.8 1.3 132 chr3R 25936413 intron CCAP-R - chr3R 25936479 intron CCAP-R - chr3R 25936545 intron CCAP-R - chr3R_10_25935001 chr3R_25935001 RAL-732 1585 chr3R 25962064 25962082 chr3R 25962160 25962178 6 96 4.5 7.5 6.0 0.9 114 chr3R 25962064 intron boss + chr3R 25962121 intron boss + chr3R 25962178 intron boss + chr3R_6_25960001 chr3R_25960001 RAL-732 1586 chr3R 25983695 25983715 chr3R 25983793 25983809 4 97 7.5 6.5 7.0 0.5 114 chr3R 25983695 exon Nf1 + chr3R 25983752 intron Nf1 + chr3R 25983809 intron Nf1 + chr3R_4_25980001 chr3R_25980001 RAL-732 1587 chr3R 26093844 26093874 chr3R 26093921 26093952 8 78 10.0 12.5 11.2 0.7 108 chr3R 26093844 intron dys - chr3R 26093898 intron dys - chr3R 26093952 intron dys - chr3R_8_26090001 chr3R_26090001 RAL-732 1588 chr3R 26108829 26108843 chr3R 26117412 26117426 Tirant 4 8583 1.0 0.0 0.5 2.7 8597 chr3R 26108829 5` UTR CG31324 + chr3R 26113128 intron CG31324 + chr3R 26117426 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-732 1589 chr3R 26126273 26126481 chr3R 26126378 26126635 6 113 8.0 4.5 6.2 0.8 362 chr3R 26126273 intron CG31324 + chr3R 26126454 intron CG31324 + chr3R 26126635 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-732 1590 chr3R 26235493 26235517 chr3R 26235575 26235599 7 81 3.5 11.0 7.2 0.9 106 chr3R 26235493 5` UTR CR42745 + chr3R 26235546 5` UTR CR42745 + chr3R 26235599 5` UTR CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-732 1591 chr3R 26334572 26334605 chr3R 26334696 26334729 8 125 9.5 9.5 9.5 0.8 157 chr3R 26334572 intron CG33970 + chr3R 26334650 intron CG33970 + chr3R 26334729 intron CG33970 + chr3R_8_26330001 chr3R_26330001 RAL-732 1592 chr3R 26376322 26376358 chr3R 26385482 26385518 roo 12 9160 1.5 0.5 1.0 6.0 9196 chr3R 26376322 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385518 intergenic not near genes chr3R_12_26380001 chr3R_26380001 RAL-732 1593 chr3R 26453246 26453266 chr3R 26453329 26453349 6 83 9.0 8.5 8.8 0.6 103 chr3R 26453246 intron CG5447 + chr3R 26453298 intron CG5447 + chr3R 26453349 intron CG5447 + chr3R_6_26450001 chr3R_26450001 RAL-732 1594 chr3R 26558348 26558358 chr3R 26565660 26565670 Stalker4 6 7312 3.0 6.5 4.8 1.0 7322 chr3R 26558348 intron scrib + chr3R 26562009 intron scrib + chr3R 26565670 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-732 1595 chr3R 26607745 26607774 chr3R 26607821 26607850 6 76 1.5 3.5 2.5 1.7 105 chr3R 26607745 5` UTR CR44951 + chr3R 26607798 5` UTR CR44951 + chr3R 26607850 5` UTR CR44951 + chr3R_6_26605001 chr3R_26605001 RAL-732 1596 chr3R 26641637 26641661 chr3R 26641724 26641748 6 85 4.0 3.0 3.5 1.3 111 chr3R 26641637 intergenic not near genes chr3R 26641692 intergenic not near genes chr3R 26641748 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-732 1597 chr3R 26642748 26642759 chr3R 26643142 26643153 jockey 6 394 2.0 6.0 4.0 1.2 405 chr3R 26642748 intergenic not near genes chr3R 26642950 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-732 1598 chr3R 21907534 21907535 chr3R 26659332 26659335 5 4751799 16.5 13.5 15.0 0.3 4751801 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-732 1599 chr3R 21907534 21907536 chr3R 26659336 26659337 5 4751801 16.5 13.5 15.0 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-732 1600 chr3R 26770246 26770266 chr3R 26770323 26770343 10 77 0.5 3.0 1.8 3.6 97 chr3R 26770246 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770343 intergenic not near genes chr3R_10_26770001 chr3R_26770001 RAL-732 1601 chr3R 26810555 26810586 chr3R 26811040 26811071 roo 5 485 2.5 3.0 2.8 1.3 516 chr3R 26810555 intron Tl + chr3R 26810813 intron Tl + chr3R 26811071 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-732 1602 chr3R 26847880 26847912 chr3R 26847954 26847988 4 75 2.5 2.5 2.5 1.1 108 chr3R 26847880 intron Lerp - chr3R 26847934 intron Lerp - chr3R 26847988 intron Lerp - chr3R_4_26845001 chr3R_26845001 RAL-732 1603 chr3R 27028729 27028748 chr3R 27028808 27028827 7 79 2.0 0.5 1.2 3.2 98 chr3R 27028729 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028827 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-732 1604 chr3R 27140514 27140543 chr3R 27148124 27148152 412 10 7610 5.5 3.0 4.2 1.9 7638 chr3R 27140514 intron CG6051 - chr3R 27144333 intron CG6051 - chr3R 27148152 intron CG6051 - chr3R_10_27140001 chr3R_27140001 RAL-732 1605 chr3R 27195576 27195612 chr3R 27195662 27195697 4 86 6.0 11.5 8.8 0.4 121 chr3R 27195576 intergenic not near genes chr3R 27195636 intergenic not near genes chr3R 27195697 intergenic not near genes chr3R_4_27195001 chr3R_27195001 RAL-732 1606 chr3R 27301271 27301303 chr3R 27301358 27301390 6 87 5.5 4.5 5.0 1.0 119 chr3R 27301271 intron CG3339 - chr3R 27301330 intron CG3339 - chr3R 27301390 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-732 1607 chr3R 27377393 27377501 chr3R 27377478 27377589 6 87 1.0 1.5 1.2 2.7 196 chr3R 27377393 3` UTR side - chr3R 27377491 3` UTR side - chr3R 27377589 3` UTR side - chr3R_6_27375001 chr3R_27375001 RAL-732 1608 chr3R 27492381 27492405 chr3R 27492468 27492492 4 87 4.0 2.5 3.2 1.0 111 chr3R 27492381 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492492 intergenic not near genes chr3R_4_27490001 chr3R_27490001 RAL-732 1609 chr3R 27511249 27511283 chr3R 27511336 27511370 8 87 6.5 6.0 6.2 1.1 121 chr3R 27511249 intergenic not near genes chr3R 27511310 intergenic not near genes chr3R 27511370 intergenic not near genes chr3R_8_27510001 chr3R_27510001 RAL-732 1610 chr3R 27521172 27521187 chr3R 27530381 27530396 roo 6 9209 1.0 0.5 0.8 3.3 9224 chr3R 27521172 intron CG12885 + chr3R 27525784 intron CG12885 + chr3R 27530396 intron CG12885 + chr3R_6_27525001 chr3R_27525001 RAL-732 1611 chr3R 27595068 27595087 chr3R 27595151 27595169 6 83 1.0 3.5 2.2 1.9 101 chr3R 27595068 intron CG5639 - chr3R 27595118 intron CG5639 - chr3R 27595169 intron CG5639 - chr3R_6_27595001 chr3R_27595001 RAL-732 1612 chr3R 27644253 27644279 chr3R 27644345 27644371 11 92 7.5 8.5 8.0 1.2 118 chr3R 27644253 intron tau - chr3R 27644312 intron tau - chr3R 27644371 intron tau - chr3R_11_27640001 chr3R_27640001 RAL-732 1613 chr3R 27685768 27685790 chr3R 27685847 27685869 6 78 4.0 6.0 5.0 1.0 101 chr3R 27685768 3` UTR CG31055 - chr3R 27685818 3` UTR CG31055 - chr3R 27685869 3` UTR CG31055 - chr3R_6_27685001 chr3R_27685001 RAL-732 1614 chr3R 27705359 27705391 chr3R 27705439 27705471 9 80 4.5 7.5 6.0 1.3 112 chr3R 27705359 exon CG12428 - chr3R 27705415 intron CG12428 - chr3R 27705471 exon CG12428 - chr3R_9_27705001 chr3R_27705001 RAL-732 1615 chr3R 27706776 27706809 chr3R 27706852 27706886 5 77 7.0 6.5 6.8 0.6 110 chr3R 27706776 intergenic CG12428 -,CG12877 + chr3R 27706831 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-732 1616 chr3R 27779275 27779286 chr3R 27779354 27779366 5 78 2.0 8.5 5.2 0.8 91 chr3R 27779275 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-732 1617 chr3R 27799939 27799962 chr3R 27800021 27800044 6 82 3.5 1.5 2.5 1.7 105 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-732 1618 chr3R 27862963 27862984 chr3R 27868265 27868288 Transpac 6 5304 0.0 1.5 0.8 3.3 5325 chr3R 27862963 intron CG34353 - chr3R 27865626 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-732 1619 chr3R 27875699 27875728 chr3R 27882754 27882782 297 14 7055 2.5 4.5 3.5 3.1 7083 chr3R 27875699 intron CG34353 - chr3R 27879240 intron CG34353 - chr3R 27882782 intron CG34353 - chr3R_14_27875001 chr3R_27875001 RAL-732 1620 chr3R 27997931 27997951 chr3R 27998014 27998034 4 83 7.5 6.0 6.8 0.5 103 chr3R 27997931 intergenic not near genes chr3R 27997982 intergenic not near genes chr3R 27998034 intergenic not near genes chr3R_4_27995001 chr3R_27995001 RAL-732 1621 chr3R 28068494 28068525 chr3R 28073936 28073967 I-element 6 5442 1.0 2.0 1.5 2.4 5473 chr3R 28068494 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-732 1622 chr3R 28156012 28156048 chr3R 28156350 28156386 6 338 4.5 6.0 5.2 1.0 374 chr3R 28156012 intron CG34354 + chr3R 28156199 intron CG34354 + chr3R 28156386 intron CG34354 + chr3R_6_28155001 chr3R_28155001 RAL-732 1623 chr3R 28173672 28173702 chr3R 28181102 28181132 mdg1 5 7430 3.5 2.0 2.8 1.3 7460 chr3R 28173672 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181132 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-732 1624 chr3R 28227637 28227649 chr3R 28227746 28227757 4 108 5.5 5.5 5.5 0.6 120 chr3R 28227637 intron CG34354 + chr3R 28227697 intron CG34354 + chr3R 28227757 intron CG34354 + chr3R_4_28225001 chr3R_28225001 RAL-732 1625 chr3R 28253338 28253370 chr3R 28255848 28255880 jockey 9 2510 2.5 3.0 2.8 2.4 2542 chr3R 28253338 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-732 1626 chr3R 28286319 28286348 chr3R 28286407 28286434 6 88 12.5 14.5 13.5 0.4 115 chr3R 28286319 intergenic not near genes chr3R 28286376 intergenic not near genes chr3R 28286434 intergenic not near genes chr3R_6_28285001 chr3R_28285001 RAL-732 1627 chr3R 28302103 28302132 chr3R 28302542 28302571 jockey 5 439 2.0 2.5 2.2 1.6 468 chr3R 28302103 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302571 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-732 1628 chr3R 28308072 28308083 chr3R 28308149 28308160 6 76 12.0 15.0 13.5 0.4 88 chr3R 28308072 intergenic not near genes chr3R 28308116 intergenic not near genes chr3R 28308160 intergenic not near genes chr3R_6_28305001 chr3R_28305001 RAL-732 1629 chr3R 28337695 28337715 chr3R 28337781 28337802 5 87 9.0 9.0 9.0 0.5 107 chr3R 28337695 intron Gfat2 - chr3R 28337748 intron Gfat2 - chr3R 28337802 intron Gfat2 - chr3R_5_28335001 chr3R_28335001 RAL-732 1630 chr3R 28352375 28352542 chr3R 28352757 28352882 9 345 2.0 2.5 2.2 2.8 507 chr3R 28352375 exon Or98b + chr3R 28352628 exon Or98b + chr3R 28352882 exon Or98b + chr3R_9_28350001 chr3R_28350001 RAL-732 1631 chr3R 28371975 28371997 chr3R 28372620 28372642 5 645 4.0 4.5 4.2 1.0 667 chr3R 28371975 intergenic not near genes chr3R 28372308 intergenic not near genes chr3R 28372642 intergenic not near genes chr3R_5_28370001 chr3R_28370001 RAL-732 1632 chr3R 28376101 28376130 chr3R 28376626 28376654 5 525 6.5 7.0 6.8 0.6 553 chr3R 28376101 intergenic not near genes chr3R 28376378 intergenic not near genes chr3R 28376654 intergenic not near genes chr3R_5_28375001 chr3R_28375001 RAL-732 1633 chr3R 28380789 28380824 chr3R 28381023 28381057 9 233 6.5 4.0 5.2 1.5 268 chr3R 28380789 intergenic not near genes chr3R 28380923 intergenic not near genes chr3R 28381057 intergenic not near genes chr3R_9_28380001 chr3R_28380001 RAL-732 1634 chr3R 28425189 28425209 chr3R 28425266 28425288 4 78 8.0 6.0 7.0 0.5 99 chr3R 28425189 intron beat-VI + chr3R 28425238 intron beat-VI + chr3R 28425288 intron beat-VI + chr3R_4_28425001 chr3R_28425001 RAL-732 1635 chr3R 28597492 28597510 chr3R 28597569 28597587 6 77 17.5 18.5 18.0 0.3 95 chr3R 28597492 intergenic not near genes chr3R 28597540 intergenic not near genes chr3R 28597587 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-732 1636 chr3R 28599378 28599401 chr3R 28599524 28599548 5 146 4.0 5.0 4.5 0.9 170 chr3R 28599378 intergenic Noa36 - chr3R 28599463 intergenic Noa36 - chr3R 28599548 intergenic Noa36 - chr3R_5_28595001 chr3R_28595001 RAL-732 1637 chr3R 28626192 28626212 chr3R 28626292 28626312 6 100 6.5 3.0 4.8 1.0 120 chr3R 28626192 intron CG10011 - chr3R 28626252 intron CG10011 - chr3R 28626312 intron CG10011 - chr3R_6_28625001 chr3R_28625001 RAL-732 1638 chr3R 28711750 28711764 chr3R 28711839 28711853 4 89 2.5 7.0 4.8 0.7 103 chr3R 28711750 intron htt + chr3R 28711802 intron htt + chr3R 28711853 intron htt + chr3R_4_28710001 chr3R_28710001 RAL-732 1639 chr3R 21907534 21907536 chr3R 28831798 28831801 76 6924266 16.5 14.5 15.5 4.6 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_76_25365001 chr3R_25365001 RAL-732 1640 chr3R 21907534 21907534 chr3R 28831802 28831804 60 6924267 16.5 14.0 15.2 3.7 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_60_25365001 chr3R_25365001 RAL-732 1641 chr3R 28913450 28913475 chr3R 28913526 28913550 4 76 15.5 13.0 14.2 0.3 100 chr3R 28913450 intron Doa + chr3R 28913500 intron Doa + chr3R 28913550 intron Doa + chr3R_4_28910001 chr3R_28910001 RAL-732 1642 chr3R 21907534 21907536 chr3R 29013340 29013340 27 7105805 16.5 16.5 16.5 1.5 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_27_25460001 chr3R_25460001 RAL-732 1643 chr3R 29017427 29017449 chr3R 29017509 29017531 5 81 7.0 8.5 7.8 0.6 104 chr3R 29017427 intron wat - chr3R 29017479 intron wat - chr3R 29017531 intron wat - chr3R_5_29015001 chr3R_29015001 RAL-732 1644 chr3R 29032746 29032777 chr3R 29032820 29032854 8 77 2.5 0.0 1.2 3.6 108 chr3R 29032746 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032800 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032854 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_8_29030001 chr3R_29030001 RAL-732 1645 chr3R 29053737 29053758 chr3R 29054247 29054267 7 510 4.0 0.5 2.2 2.2 530 chr3R 29053737 exon CG11842 + chr3R 29054002 intergenic CG11842 +,CG11843 + chr3R 29054267 intergenic CG11843 +,CG11842 + chr3R_7_29050001 chr3R_29050001 RAL-732 1646 chr3R 29140053 29140075 chr3R 29140275 29140296 6 221 2.0 3.0 2.5 1.7 243 chr3R 29140053 intron CG14516 + chr3R 29140174 intron CG14516 + chr3R 29140296 intron CG14516 + chr3R_6_29140001 chr3R_29140001 RAL-732 1647 chr3R 29237247 29237326 chr3R 29239268 29239347 8 2021 11.0 2.5 6.8 1.0 2100 chr3R 29237247 exon CG11951 - chr3R 29238297 intron CG11951 - chr3R 29239347 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-732 1648 chr3R 29239200 29239245 chr3R 29245486 29245536 6 6290 2.5 29.0 15.8 0.4 6336 chr3R 29239200 exon CG31427 - chr3R 29242368 exon CG31445 - chr3R 29245536 exon SP1029 - chr3R_6_29240001 chr3R_29240001 RAL-732 1649 chr3R 29375981 29376226 chr3R 29376067 29376301 4 81 3.0 7.5 5.2 0.6 320 chr3R 29375981 intergenic not near genes chr3R 29376141 intergenic not near genes chr3R 29376301 intergenic not near genes chr3R_4_29375001 chr3R_29375001 RAL-732 1650 chr3R 29406610 29406646 chr3R 29407896 29407932 jockey 8 1286 4.0 3.0 3.5 1.8 1322 chr3R 29406610 intron Ptp99A + chr3R 29407271 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-732 1651 chr3R 29415612 29415638 chr3R 29415775 29415805 14 164 20.5 18.5 19.5 0.7 193 chr3R 29415612 intron Ptp99A + chr3R 29415708 intron Ptp99A + chr3R 29415805 intron Ptp99A + chr3R_14_29415001 chr3R_29415001 RAL-732 1652 chr3R 29449358 29449385 chr3R 29449436 29449463 10 78 1.0 2.0 1.5 4.0 105 chr3R 29449358 intron Ptp99A + chr3R 29449410 intron Ptp99A + chr3R 29449463 intron Ptp99A + chr3R_10_29445001 chr3R_29445001 RAL-732 1653 chr3R 29505896 29505917 chr3R 29505973 29505994 7 77 1.5 2.0 1.8 2.5 98 chr3R 29505896 intergenic not near genes chr3R 29505945 intergenic not near genes chr3R 29505994 intergenic not near genes chr3R_7_29505001 chr3R_29505001 RAL-732 1654 chr3R 29526233 29526243 chr3R 29526320 29526330 4 87 1.5 0.5 1.0 2.0 97 chr3R 29526233 intergenic not near genes chr3R 29526282 intergenic not near genes chr3R 29526330 intergenic not near genes chr3R_4_29525001 chr3R_29525001 RAL-732 1655 chr3R 29543144 29543179 chr3R 29543236 29543271 7 92 10.0 13.0 11.5 0.6 127 chr3R 29543144 intergenic not near genes chr3R 29543208 intergenic not near genes chr3R 29543271 intergenic not near genes chr3R_7_29540001 chr3R_29540001 RAL-732 1656 chr3R 29621057 29621279 chr3R 29621143 29621356 5 82 7.0 10.0 8.5 0.5 299 chr3R 29621057 intergenic CG1907 + chr3R 29621206 intergenic CG1907 + chr3R 29621356 intergenic not near genes chr3R_5_29620001 chr3R_29620001 RAL-732 1657 chr3R 29626791 29626802 chr3R 29627020 29627031 4 229 10.5 11.0 10.8 0.3 240 chr3R 29626791 intergenic not near genes chr3R 29626911 intergenic not near genes chr3R 29627031 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-732 1658 chr3R 29645829 29645854 chr3R 29645909 29645935 9 81 11.0 7.5 9.2 0.9 106 chr3R 29645829 intron Dop1R2 - chr3R 29645882 intron Dop1R2 - chr3R 29645935 intron Dop1R2 - chr3R_9_29645001 chr3R_29645001 RAL-732 1659 chr3R 29738267 29738297 chr3R 29739733 29739763 hobo 12 1467 1.5 0.0 0.8 6.7 1496 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739015 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_12_29735001 chr3R_29735001 RAL-732 1660 chr3R 29882018 29882044 chr3R 29891175 29891201 roo 8 9157 2.5 3.5 3.0 2.0 9183 chr3R 29882018 intron CG31038 + chr3R 29886610 intron CG31038 + chr3R 29891201 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-732 1661 chr3R 29950575 29950594 chr3R 29950652 29950671 7 76 4.0 3.5 3.8 1.5 96 chr3R 29950575 intergenic TkR99D - chr3R 29950623 intergenic TkR99D - chr3R 29950671 intergenic TkR99D - chr3R_7_29950001 chr3R_29950001 RAL-732 1662 chr3R 29975696 29975728 chr3R 29975778 29975810 4 82 3.0 2.5 2.8 1.1 114 chr3R 29975696 intergenic not near genes chr3R 29975753 intergenic not near genes chr3R 29975810 intergenic not near genes chr3R_4_29975001 chr3R_29975001 RAL-732 1663 chr3R 30062938 30062964 chr3R 30063026 30063051 7 87 9.0 10.0 9.5 0.7 113 chr3R 30062938 intron sima + chr3R 30062994 intron sima + chr3R 30063051 intron sima + chr3R_7_30060001 chr3R_30060001 RAL-732 1664 chr3R 30238771 30238791 chr3R 30239927 30239955 1360 6 1162 0.5 4.0 2.2 1.9 1184 chr3R 30238771 intergenic not near genes chr3R 30239363 intergenic not near genes chr3R 30239955 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-732 1665 chr3R 30252274 30252292 chr3R 30252402 30252420 4 126 19.5 2.0 10.8 0.3 146 chr3R 30252274 exon CG9682 + chr3R 30252347 exon CG9682 + chr3R 30252420 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-732 1666 chr3R 30396215 30396246 chr3R 30404481 30404512 roo 5 8266 1.0 2.5 1.8 1.8 8297 chr3R 30396215 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-732 1667 chr3R 30452153 30452178 chr3R 30452273 30452297 11 120 6.5 6.5 6.5 1.5 144 chr3R 30452153 intron aralar1 - chr3R 30452225 intron aralar1 - chr3R 30452297 intron aralar1 - chr3R_11_30450001 chr3R_30450001 RAL-732 1668 chr3R 30473689 30473704 chr3R 30473804 30473820 5 116 2.0 5.0 3.5 1.1 131 chr3R 30473689 intron PH4alphaEFB + chr3R 30473754 intron PH4alphaEFB + chr3R 30473820 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-732 1669 chr3R 30480472 30480510 chr3R 30482940 30482978 jockey 14 2468 1.5 2.5 2.0 4.7 2506 chr3R 30480472 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_14_30480001 chr3R_30480001 RAL-732 1670 chr3R 30560362 30560373 chr3R 30560441 30560450 5 79 9.0 11.5 10.2 0.4 88 chr3R 30560362 intron tmod + chr3R 30560406 intron tmod + chr3R 30560450 intron tmod + chr3R_5_30560001 chr3R_30560001 RAL-732 1671 chr3R 30600796 30600823 chr3R 30600890 30600919 5 96 4.5 2.5 3.5 1.1 123 chr3R 30600796 intron CG2246 - chr3R 30600858 intron CG2246 - chr3R 30600919 intron CG2246 - chr3R_5_30600001 chr3R_30600001 RAL-732 1672 chr3R 30627609 30627636 chr3R 30627685 30627716 9 79 2.5 4.0 3.2 2.1 107 chr3R 30627609 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-732 1673 chr3R 30634996 30635010 chr3R 30635081 30635094 6 85 3.5 4.0 3.8 1.2 98 chr3R 30634996 intergenic not near genes chr3R 30635045 intergenic not near genes chr3R 30635094 intergenic not near genes chr3R_6_30635001 chr3R_30635001 RAL-732 1674 chr3R 30679518 30679552 chr3R 30686987 30687020 blood 6 7469 3.0 5.0 4.0 1.2 7502 chr3R 30679518 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-732 1675 chr3R 30690169 30690182 chr3R 30690253 30690266 5 84 15.0 12.5 13.8 0.3 97 chr3R 30690169 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690266 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-732 1676 chr3R 30818821 30818846 chr3R 30820386 30820411 1360 6 1565 2.0 1.0 1.5 2.4 1590 chr3R 30818821 intron cindr + chr3R 30819616 intron cindr + chr3R 30820411 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-732 1677 chr3R 30830565 30830595 chr3R 30830647 30830678 5 83 9.5 9.5 9.5 0.5 113 chr3R 30830565 intron CG15544 + chr3R 30830622 intron CG15544 + chr3R 30830678 intron CG15544 + chr3R_5_30830001 chr3R_30830001 RAL-732 1678 chr3R 30948085 30948109 chr3R 30948276 30948300 8 191 7.0 7.0 7.0 1.0 215 chr3R 30948085 intergenic not near genes chr3R 30948192 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_8_30945001 chr3R_30945001 RAL-732 1679 chr3R 30956857 30956888 chr3R 30956964 30956995 5 107 8.0 11.0 9.5 0.5 138 chr3R 30956857 intergenic not near genes chr3R 30956926 intergenic not near genes chr3R 30956995 intergenic not near genes chr3R_5_30955001 chr3R_30955001 RAL-732 1680 chr3R 30978913 30978938 chr3R 30978995 30979019 7 82 6.5 4.5 5.5 1.1 106 chr3R 30978913 intron 5-HT7 - chr3R 30978966 intron 5-HT7 - chr3R 30979019 intron 5-HT7 - chr3R_7_30975001 chr3R_30975001 RAL-732 1681 chr3R 30985689 30985706 chr3R 30985774 30985791 4 85 2.5 1.5 2.0 1.3 102 chr3R 30985689 intron 5-HT7 - chr3R 30985740 intron 5-HT7 - chr3R 30985791 intron 5-HT7 - chr3R_4_30985001 chr3R_30985001 RAL-732 1682 chr3R 31074234 31074258 chr3R 31081832 31081856 springer 7 7598 2.0 0.5 1.2 3.2 7622 chr3R 31074234 intron Sox100B + chr3R 31078045 intron Sox100B + chr3R 31081856 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-732 1683 chr3R 31086825 31086836 chr3R 31086916 31086922 4 89 6.0 3.5 4.8 0.7 97 chr3R 31086825 intergenic not near genes chr3R 31086874 intergenic not near genes chr3R 31086922 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-732 1684 chr3R 31115087 31115094 chr3R 31115174 31115178 4 86 4.5 2.0 3.2 1.0 91 chr3R 31115087 intergenic not near genes chr3R 31115132 intergenic not near genes chr3R 31115178 intergenic not near genes chr3R_4_31115001 chr3R_31115001 RAL-732 1685 chr3R 31279373 31279403 chr3R 31285564 31285594 diver 5 6191 1.5 4.5 3.0 1.2 6221 chr3R 31279373 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-732 1686 chr3R 31413088 31413122 chr3R 31418288 31418322 copia 12 5200 2.5 1.5 2.0 4.0 5234 chr3R 31413088 intron Gprk2 + chr3R 31415705 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-732 1687 chr3R 31426886 31426901 chr3R 31426978 31426993 6 92 3.0 1.0 2.0 2.0 107 chr3R 31426886 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31426993 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-732 1688 chr3R 31435362 31435390 chr3R 31435514 31435542 13 152 3.5 4.5 4.0 2.6 180 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435542 intron Gprk2 + chr3R_13_31435001 chr3R_31435001 RAL-732 1689 chr3R 31442273 31442296 chr3R 31442358 31442379 5 84 3.5 6.5 5.0 0.8 106 chr3R 31442273 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442379 intron Gprk2 + chr3R_5_31440001 chr3R_31440001 RAL-732 1690 chr3R 31482371 31482400 chr3R 31482450 31482467 7 76 4.5 6.0 5.2 1.1 96 chr3R 31482371 intergenic not near genes chr3R 31482419 intergenic not near genes chr3R 31482467 intergenic not near genes chr3R_7_31480001 chr3R_31480001 RAL-732 1691 chr3R 31530815 31530848 chr3R 31531142 31531175 10 326 2.0 1.5 1.8 3.6 360 chr3R 31530815 intergenic not near genes chr3R 31530995 intergenic not near genes chr3R 31531175 intergenic not near genes chr3R_10_31530001 chr3R_31530001 RAL-732 1692 chr3R 31538489 31538517 chr3R 31538567 31538595 7 78 3.5 2.5 3.0 1.8 106 chr3R 31538489 intergenic not near genes chr3R 31538542 intergenic not near genes chr3R 31538595 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-732 1693 chr3R 31610120 31610145 chr3R 31610205 31610231 7 85 1.0 1.0 1.0 3.5 111 chr3R 31610120 intron CycG - chr3R 31610176 intron CycG - chr3R 31610231 intron CycG - chr3R_7_31610001 chr3R_31610001 RAL-732 1694 chr3R 31691533 31691555 chr3R 31696299 31696319 Doc 8 4765 3.5 6.5 5.0 1.3 4786 chr3R 31691533 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696319 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-732 1695 chr3R 31699722 31699751 chr3R 31699801 31699833 10 81 2.0 5.5 3.8 2.1 111 chr3R 31699722 intergenic not near genes chr3R 31699778 intergenic not near genes chr3R 31699833 intergenic not near genes chr3R_10_31695001 chr3R_31695001 RAL-732 1696 chr3R 31831536 31831565 chr3R 31831615 31831644 11 79 3.5 5.5 4.5 2.0 108 chr3R 31831536 intron RhoGAP100F + chr3R 31831590 intron RhoGAP100F + chr3R 31831644 intron RhoGAP100F + chr3R_11_31830001 chr3R_31830001 RAL-732 1697 chr3R 31911677 31911713 chr3R 31911762 31911798 6 85 1.0 1.5 1.2 2.7 121 chr3R 31911677 intron heph - chr3R 31911738 intron heph - chr3R 31911798 intron heph - chr3R_6_31910001 chr3R_31910001 RAL-732 1698 chr3R 31931196 31931216 chr3R 31931279 31931299 5 83 2.0 1.5 1.8 1.8 103 chr3R 31931196 intron heph - chr3R 31931248 intron heph - chr3R 31931299 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-732 1699 chr3R 31977470 31977492 chr3R 31977561 31977583 5 90 8.0 7.5 7.8 0.6 113 chr3R 31977470 intron heph - chr3R 31977526 intron heph - chr3R 31977583 intron heph - chr3R_5_31975001 chr3R_31975001 RAL-732 1700 chr3R 31995451 31995464 chr3R 31995549 31995561 5 98 5.0 5.0 5.0 0.8 110 chr3R 31995451 intron heph - chr3R 31995506 intron heph - chr3R 31995561 intron heph - chr3R_5_31995001 chr3R_31995001 RAL-732 1701 chr3R 32022326 32022356 chr3R 32022427 32022458 9 102 5.5 4.0 4.8 1.6 132 chr3R 32022326 5` UTR CR45557 + chr3R 32022392 5` UTR CR45557 + chr3R 32022458 5` UTR CR45557 + chr3R_9_32020001 chr3R_32020001 RAL-732 1702 chr3R 32045569 32045597 chr3R 32045650 32045678 7 81 5.5 4.0 4.8 1.2 109 chr3R 32045569 3` UTR krz - chr3R 32045624 3` UTR krz - chr3R 32045678 3` UTR krz - chr3R_7_32045001 chr3R_32045001 RAL-732 1703 chr4 257412 257430 chr4 257582 257600 4 170 2.0 2.0 2.0 1.3 188 chr4 257412 intron RhoGAP102A + chr4 257506 intron RhoGAP102A + chr4 257600 intron RhoGAP102A + chr4_4_255001 chr4_255001 RAL-732 1704 chr4 280804 280836 chr4 281434 281466 4 630 1.5 2.5 2.0 1.3 662 chr4 280804 intron Syt7 - chr4 281135 intron Syt7 - chr4 281466 intron Syt7 - chr4_4_280001 chr4_280001 RAL-732 1705 chr4 293875 293899 chr4 294120 294144 5 245 0.5 0.5 0.5 3.3 269 chr4 293875 intron Syt7 - chr4 294010 intron Syt7 - chr4 294144 intron Syt7 - chr4_5_290001 chr4_290001 RAL-732 1706 chr4 418234 418260 chr4 418328 418354 6 94 0.5 1.5 1.0 3.0 120 chr4 418234 intergenic not near genes chr4 418294 intergenic not near genes chr4 418354 intergenic not near genes chr4_6_415001 chr4_415001 RAL-732 1707 chr4 654366 654395 chr4 654449 654478 4 83 1.5 2.0 1.8 1.4 112 chr4 654366 intron gw - chr4 654422 intron gw - chr4 654478 intron gw - chr4_4_650001 chr4_650001 RAL-732 1708 chr4 671608 671636 chr4 680191 680219 Tirant 6 8583 3.0 2.5 2.8 1.6 8611 chr4 671608 intron CG11360 + chr4 675914 intron CG11360 + chr4 680219 intron CG11360 + chr4_6_675001 chr4_675001 RAL-732 1709 chr4 896785 896793 chr4 896862 896869 4 77 4.0 0.0 2.0 1.3 84 chr4 896785 intron unc-13 - chr4 896827 intron unc-13 - chr4 896869 intron unc-13 - chr4_4_895001 chr4_895001 RAL-732 1710 chr4 905569 905596 chr4 905651 905678 8 82 2.5 1.5 2.0 2.7 109 chr4 905569 5` UTR unc-13 - chr4 905624 5` UTR unc-13 - chr4 905678 5` UTR unc-13 - chr4_8_905001 chr4_905001 RAL-732 1711 chrX 318470 318499 chrX 323556 323585 flea 7 5086 1.5 4.0 2.8 1.8 5115 chrX 318470 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323585 intron,intron CG3777 +,CG32816 - chrX_7_320001 chrX_320001 RAL-732 1712 chrX 428418 428452 chrX 434602 434637 3S18 10 6185 3.0 0.5 1.8 3.6 6219 chrX 428418 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_10_430001 chrX_430001 RAL-732 1713 chrX 440997 441025 chrX 441073 441103 12 78 0.5 0.0 0.2 10.0 106 chrX 440997 intron CG32816 - chrX 441050 intron CG32816 - chrX 441103 intron CG32816 - chrX_12_440001 chrX_440001 RAL-732 1714 chrX 494602 494637 chrX 494694 494729 6 92 2.0 4.0 3.0 1.5 127 chrX 494602 intergenic CG17778 + chrX 494666 5` UTR CG17778 + chrX 494729 intron CG17778 + chrX_6_490001 chrX_490001 RAL-732 1715 chrX 547637 547658 chrX 547881 547902 7 244 3.0 4.0 3.5 1.6 265 chrX 547637 intron Appl + chrX 547770 intron Appl + chrX 547902 intron Appl + chrX_7_545001 chrX_545001 RAL-732 1716 chrX 551428 551449 chrX 558990 559011 412 5 7562 3.5 3.0 3.2 1.2 7583 chrX 551428 intron Appl + chrX 555220 intron Appl + chrX 559011 intron Appl + chrX_5_555001 chrX_555001 RAL-732 1717 chrX 561572 561582 chrX 561668 561678 4 96 4.0 2.5 3.2 1.0 106 chrX 561572 intron Appl + chrX 561625 intron Appl + chrX 561678 intron Appl + chrX_4_560001 chrX_560001 RAL-732 1718 chrX 667655 667679 chrX 667738 667763 6 84 2.5 1.5 2.0 2.0 108 chrX 667655 intergenic not near genes chrX 667709 intergenic not near genes chrX 667763 intergenic not near genes chrX_6_665001 chrX_665001 RAL-732 1719 chrX 670268 670293 chrX 670348 670373 6 80 0.0 1.0 0.5 4.0 105 chrX 670268 intergenic not near genes chrX 670320 intergenic not near genes chrX 670373 intergenic not near genes chrX_6_670001 chrX_670001 RAL-732 1720 chrX 680844 680868 chrX 680927 680950 8 82 1.5 3.0 2.2 2.5 106 chrX 680844 intergenic not near genes chrX 680897 intergenic not near genes chrX 680950 intergenic not near genes chrX_8_680001 chrX_680001 RAL-732 1721 chrX 706802 706825 chrX 707166 707189 8 364 0.0 1.0 0.5 5.3 387 chrX 706802 intron sdk + chrX 706996 intron sdk + chrX 707189 intron sdk + chrX_8_705001 chrX_705001 RAL-732 1722 chrX 718331 718353 chrX 718410 718433 5 80 1.0 1.5 1.2 2.3 102 chrX 718331 intron sdk + chrX 718382 intron sdk + chrX 718433 intron sdk + chrX_5_715001 chrX_715001 RAL-732 1723 chrX 778126 778160 chrX 778215 778250 8 90 2.0 0.5 1.2 3.6 124 chrX 778126 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_8_775001 chrX_775001 RAL-732 1724 chrX 827599 827634 chrX 835391 835420 roo 6 7791 2.5 0.0 1.2 2.7 7821 chrX 827599 intron CG43867 - chrX 831510 intron CG43867 - chrX 835420 intron CG43867 - chrX_6_830001 chrX_830001 RAL-732 1725 chrX 868495 868509 chrX 868571 868585 4 76 2.5 4.0 3.2 1.0 90 chrX 868495 intron CG43867 - chrX 868540 intron CG43867 - chrX 868585 intron CG43867 - chrX_4_865001 chrX_865001 RAL-732 1726 chrX 882234 882270 chrX 882320 882357 7 87 2.0 0.5 1.2 3.2 123 chrX 882234 intron CG43867 - chrX 882296 intron CG43867 - chrX 882357 intron CG43867 - chrX_7_880001 chrX_880001 RAL-732 1727 chrX 906703 906733 chrX 908492 908522 S-element 8 1788 5.0 3.0 4.0 1.6 1819 chrX 906703 intron CG43867 - chrX 907612 intron CG43867 - chrX 908522 intron CG43867 - chrX_8_905001 chrX_905001 RAL-732 1728 chrX 1053117 1053123 chrX 16983076 16983076 6 15929957 7.5 4.0 5.8 0.9 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-732 1729 chrX 1072815 1072825 chrX 1072990 1073000 4 175 1.0 1.5 1.2 1.8 185 chrX 1072815 intron CR44779 + chrX 1072908 intron CR44779 + chrX 1073000 intron CR44779 + chrX_4_1070001 chrX_1070001 RAL-732 1730 chrX 1253729 1253758 chrX 1253811 1253840 8 82 3.0 1.5 2.2 2.5 111 chrX 1253729 intron Atf3 - chrX 1253784 intron Atf3 - chrX 1253840 intron Atf3 - chrX_8_1250001 chrX_1250001 RAL-732 1731 chrX 1357779 1357804 chrX 1367949 1367974 Doc 8 10170 3.0 3.0 3.0 2.0 10195 chrX 1357779 intergenic png - chrX 1362876 intergenic not near genes chrX 1367974 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-732 1732 chrX 1518037 1518073 chrX 1523439 1523475 jockey 10 5402 0.5 3.0 1.8 3.6 5438 chrX 1518037 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523475 intergenic not near genes chrX_10_1520001 chrX_1520001 RAL-732 1733 chrX 1627973 1628000 chrX 1635441 1635468 gtwin 10 7468 2.0 1.5 1.8 3.6 7495 chrX 1627973 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635468 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-732 1734 chrX 1930547 1930570 chrX 1938117 1938141 opus 4 7571 0.0 1.5 0.8 2.2 7594 chrX 1930547 intergenic CG11596 + chrX 1934344 intergenic not near genes chrX 1938141 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-732 1735 chrX 1954892 1954917 chrX 1962832 1962857 Stalker2 4 7940 1.5 2.5 2.0 1.3 7965 chrX 1954892 intron Hr4 + chrX 1958874 intron Hr4 + chrX 1962857 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-732 1736 chrX 2146653 2146687 chrX 2146745 2146780 4 92 1.5 4.5 3.0 1.0 127 chrX 2146653 intron Pgd + chrX 2146716 intron Pgd + chrX 2146780 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-732 1737 chrX 2164375 2164407 chrX 2164462 2164494 6 86 1.0 2.0 1.5 2.4 119 chrX 2164375 intron CG3630 + chrX 2164434 intron CG3630 + chrX 2164494 intron CG3630 + chrX_6_2160001 chrX_2160001 RAL-732 1738 chrX 2385738 2385757 chrX 2385815 2385835 4 78 5.0 1.0 3.0 1.0 97 chrX 2385738 intron PsGEF - chrX 2385786 intron PsGEF - chrX 2385835 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-732 1739 chrX 2399508 2399539 chrX 2399587 2399623 4 82 0.5 1.5 1.0 2.0 115 chrX 2399508 intergenic not near genes chrX 2399566 intergenic not near genes chrX 2399623 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-732 1740 chrX 2399835 2399863 chrX 2408188 2408214 roo 12 8352 6.5 0.5 3.5 2.7 8379 chrX 2399835 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408214 intergenic not near genes chrX_12_2400001 chrX_2400001 RAL-732 1741 chrX 2415114 2415124 chrX 2415193 2415204 4 80 2.5 2.5 2.5 1.1 90 chrX 2415114 intergenic not near genes chrX 2415159 intergenic not near genes chrX 2415204 intergenic not near genes chrX_4_2415001 chrX_2415001 RAL-732 1742 chrX 2559359 2559391 chrX 2559446 2559479 9 88 0.5 3.0 1.8 3.2 120 chrX 2559359 intron Pdfr + chrX 2559419 intron Pdfr + chrX 2559479 intron Pdfr + chrX_9_2555001 chrX_2555001 RAL-732 1743 chrX 2578807 2578846 chrX 2578899 2578938 9 92 3.0 1.5 2.2 2.8 131 chrX 2578807 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-732 1744 chrX 2635372 2635402 chrX 2635481 2635511 11 109 1.5 2.0 1.8 3.9 139 chrX 2635372 intron sgg + chrX 2635442 intron sgg + chrX 2635511 intron sgg + chrX_11_2635001 chrX_2635001 RAL-732 1745 chrX 2664382 2664418 chrX 2665528 2665564 1360 7 1145 0.0 3.5 1.8 2.5 1182 chrX 2664382 intron sgg + chrX 2664973 intron sgg + chrX 2665564 intron sgg + chrX_7_2660001 chrX_2660001 RAL-732 1746 chrX 2718465 2718489 chrX 2722738 2722764 11 4274 21.0 31.5 26.2 0.4 4299 chrX 2718465 exon CG2701 - chrX 2720614 exon fs(1)Yb + chrX 2722764 exon fs(1)Yb + chrX_11_2720001 chrX_2720001 RAL-732 1747 chrX 2870663 2870685 chrX 2870747 2870771 6 86 1.5 3.5 2.5 1.7 108 chrX 2870663 intron kirre + chrX 2870717 intron kirre + chrX 2870771 intron kirre + chrX_6_2870001 chrX_2870001 RAL-732 1748 chrX 3056909 3056933 chrX 3057287 3057311 4 378 2.0 2.0 2.0 1.3 402 chrX 3056909 intron kirre + chrX 3057110 intron kirre + chrX 3057311 intron kirre + chrX_4_3055001 chrX_3055001 RAL-732 1749 chrX 3058025 3058038 chrX 3058266 3058279 pogo 4 241 0.0 0.0 0.0 4.0 254 chrX 3058025 intron kirre + chrX 3058152 intron kirre + chrX 3058279 intron kirre + chrX_4_3055001 chrX_3055001 RAL-732 1750 chrX 3075648 3075664 chrX 3080953 3080970 Transpac 4 5306 1.5 4.0 2.8 1.1 5322 chrX 3075648 intron kirre + chrX 3078309 intron kirre + chrX 3080970 intron kirre + chrX_4_3075001 chrX_3075001 RAL-732 1751 chrX 3109444 3109470 chrX 3109521 3109547 4 77 0.5 1.5 1.0 2.0 103 chrX 3109444 intron kirre + chrX 3109496 intron kirre + chrX 3109547 intron kirre + chrX_4_3105001 chrX_3105001 RAL-732 1752 chrX 3408986 3409017 chrX 3409063 3409094 10 77 0.0 1.5 0.8 5.6 108 chrX 3408986 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_10_3405001 chrX_3405001 RAL-732 1753 chrX 3415025 3415042 chrX 3421210 3421227 3S18 5 6185 2.0 4.5 3.2 1.2 6202 chrX 3415025 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-732 1754 chrX 3513768 3513787 chrX 3513851 3513870 4 83 0.0 1.5 0.8 2.2 102 chrX 3513768 intron,intron CR44999 +,CG32791 - chrX 3513819 intron,intron CR44999 +,CG32791 - chrX 3513870 intron,intron CR44999 +,CG32791 - chrX_4_3510001 chrX_3510001 RAL-732 1755 chrX 3535422 3535433 chrX 3535513 3535524 5 91 3.0 5.0 4.0 1.0 102 chrX 3535422 intron CG32791 - chrX 3535473 intron CG32791 - chrX 3535524 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-732 1756 chrX 3597562 3597580 chrX 3619730 3619748 roo 6 22168 2.0 1.0 1.5 2.4 22186 chrX 3597562 intron AstA-R1 + chrX 3608655 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-732 1757 chrX 3818741 3818761 chrX 3818977 3818996 4 235 15.0 10.5 12.8 0.3 255 chrX 3818741 intron ec + chrX 3818868 intron ec + chrX 3818996 intron ec + chrX_4_3815001 chrX_3815001 RAL-732 1758 chrX 3842326 3842352 chrX 3842567 3842593 pogo 5 241 1.5 4.0 2.8 1.3 267 chrX 3842326 intron ec + chrX 3842460 intron ec + chrX 3842593 intron ec + chrX_5_3840001 chrX_3840001 RAL-732 1759 chrX 3866105 3866132 chrX 3866183 3866210 6 78 3.0 0.5 1.8 2.1 105 chrX 3866105 intron yin - chrX 3866158 intron yin - chrX 3866210 intron yin - chrX_6_3865001 chrX_3865001 RAL-732 1760 chrX 3986863 3986896 chrX 3994496 3994529 412 4 7633 1.5 1.0 1.2 1.8 7666 chrX 3986863 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994529 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-732 1761 chrX 4029529 4029554 chrX 4029719 4029743 6 190 2.0 3.0 2.5 1.7 214 chrX 4029529 intergenic not near genes chrX 4029636 intergenic not near genes chrX 4029743 intergenic not near genes chrX_6_4025001 chrX_4025001 RAL-732 1762 chrX 4048507 4048528 chrX 4048575 4048604 6 75 2.0 2.0 2.0 2.0 97 chrX 4048507 3` UTR CR45482 - chrX 4048556 3` UTR CR45482 - chrX 4048604 3` UTR CR45482 - chrX_6_4045001 chrX_4045001 RAL-732 1763 chrX 4157896 4157919 chrX 4164949 4164971 297 8 7053 2.0 0.0 1.0 4.0 7075 chrX 4157896 intron Fas2 - chrX 4161434 intron Fas2 - chrX 4164971 intron Fas2 - chrX_8_4160001 chrX_4160001 RAL-732 1764 chrX 4247672 4247699 chrX 4247766 4247794 6 95 2.0 3.5 2.8 1.6 122 chrX 4247672 3` UTR CG43134 + chrX 4247733 3` UTR CG43134 + chrX 4247794 intergenic CG43134 + chrX_6_4245001 chrX_4245001 RAL-732 1765 chrX 4262758 4262785 chrX 4262857 4262883 6 98 2.0 4.5 3.2 1.4 125 chrX 4262758 intergenic not near genes chrX 4262820 intergenic not near genes chrX 4262883 intergenic not near genes chrX_6_4260001 chrX_4260001 RAL-732 1766 chrX 4267315 4267341 chrX 4267395 4267421 6 80 1.5 2.0 1.8 2.1 106 chrX 4267315 intergenic not near genes chrX 4267368 intergenic not near genes chrX 4267421 intergenic not near genes chrX_6_4265001 chrX_4265001 RAL-732 1767 chrX 4276475 4276506 chrX 4276554 4276585 6 79 0.5 1.0 0.8 3.3 110 chrX 4276475 intergenic CG15577 - chrX 4276530 3` UTR CG15577 - chrX 4276585 3` UTR CG15577 - chrX_6_4275001 chrX_4275001 RAL-732 1768 chrX 4396978 4397009 chrX 4397060 4397094 7 84 1.5 1.5 1.5 2.8 116 chrX 4396978 intron CR32773 - chrX 4397036 intron CR32773 - chrX 4397094 intron CR32773 - chrX_7_4395001 chrX_4395001 RAL-732 1769 chrX 4525754 4525768 chrX 4525846 4525860 6 92 3.0 0.5 1.8 2.1 106 chrX 4525754 intron CR32773 - chrX 4525807 intron CR32773 - chrX 4525860 intron CR32773 - chrX_6_4525001 chrX_4525001 RAL-732 1770 chrX 4574903 4574930 chrX 4574993 4575021 4 90 0.0 3.5 1.8 1.4 118 chrX 4574903 intron CR32773 - chrX 4574962 intron CR32773 - chrX 4575021 intron CR32773 - chrX_4_4570001 chrX_4570001 RAL-732 1771 chrX 4575615 4575637 chrX 4575704 4575726 6 89 1.5 1.5 1.5 2.4 111 chrX 4575615 intron CR32773 - chrX 4575670 intron CR32773 - chrX 4575726 intron CR32773 - chrX_6_4575001 chrX_4575001 RAL-732 1772 chrX 4660820 4660834 chrX 4660919 4660933 5 99 4.0 0.0 2.0 1.7 113 chrX 4660820 intron CG3009 - chrX 4660876 intron CG3009 - chrX 4660933 intron CG3009 - chrX_5_4660001 chrX_4660001 RAL-732 1773 chrX 4700391 4700426 chrX 4700734 4700769 jockey 4 343 1.5 2.5 2.0 1.3 378 chrX 4700391 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-732 1774 chrX 4723577 4723585 chrX 4723655 4723665 5 79 5.0 4.5 4.8 0.9 88 chrX 4723577 intron Proc-R + chrX 4723621 intron Proc-R + chrX 4723665 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-732 1775 chrX 4731815 4731831 chrX 4736908 4736924 jockey 4 5093 7.0 4.0 5.5 0.6 5109 chrX 4731815 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736924 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-732 1776 chrX 4763251 4763285 chrX 4763739 4763773 Stalker4 6 488 3.5 2.0 2.8 1.6 522 chrX 4763251 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763773 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-732 1777 chrX 4792382 4792409 chrX 4792815 4792842 jockey 4 433 0.5 3.0 1.8 1.4 460 chrX 4792382 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792842 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-732 1778 chrX 4827970 4827999 chrX 4835341 4835370 Stalker4 6 7370 2.0 3.0 2.5 1.7 7400 chrX 4827970 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835370 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-732 1779 chrX 4871204 4871230 chrX 4871304 4871330 6 100 0.0 0.0 0.0 6.0 126 chrX 4871204 intron CG42594 + chrX 4871267 intron CG42594 + chrX 4871330 intron CG42594 + chrX_6_4870001 chrX_4870001 RAL-732 1780 chrX 4990045 4990076 chrX 4997259 4997290 roo 7 7214 2.0 1.5 1.8 2.5 7245 chrX 4990045 intron CR44833 - chrX 4993668 intron CR44833 - chrX 4997290 intron CR44833 - chrX_7_4990001 chrX_4990001 RAL-732 1781 chrX 5096275 5096303 chrX 5103838 5103868 springer 9 7565 1.5 1.0 1.2 4.1 7593 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_9_5100001 chrX_5100001 RAL-732 1782 chrX 5338727 5338736 chrX 5339980 5339988 jockey 4 1252 2.0 1.5 1.8 1.4 1261 chrX 5338727 intergenic not near genes chrX 5339358 intergenic not near genes chrX 5339988 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-732 1783 chrX 5349275 5349292 chrX 5349352 5349369 9 77 4.0 1.0 2.5 2.6 94 chrX 5349275 intron SK + chrX 5349322 intron SK + chrX 5349369 intron SK + chrX_9_5345001 chrX_5345001 RAL-732 1784 chrX 5350303 5350313 chrX 5350411 5350422 6 108 5.5 4.0 4.8 1.0 119 chrX 5350303 intron SK + chrX 5350362 intron SK + chrX 5350422 intron SK + chrX_6_5350001 chrX_5350001 RAL-732 1785 chrX 5524843 5524871 chrX 5528705 5528734 412 7 3862 2.0 0.5 1.2 3.2 3891 chrX 5524843 intergenic snoRNA:Psi28S-3342 - chrX 5526788 intergenic not near genes chrX 5528734 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-732 1786 chrX 5603646 5603670 chrX 5603727 5603751 6 81 1.5 3.0 2.2 1.9 105 chrX 5603646 intron Vsx1 + chrX 5603698 intron Vsx1 + chrX 5603751 intron Vsx1 + chrX_6_5600001 chrX_5600001 RAL-732 1787 chrX 5819169 5819198 chrX 5819260 5819289 8 91 2.5 5.0 3.8 1.7 120 chrX 5819169 exon CG15765 + chrX 5819229 intron CG15765 + chrX 5819289 intron CG15765 + chrX_8_5815001 chrX_5815001 RAL-732 1788 chrX 5883825 5883828 chrX 5884066 5884069 pogo 4 241 3.0 2.0 2.5 1.1 244 chrX 5883825 intron CR45668 - chrX 5883947 intron CR45668 - chrX 5884069 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-732 1789 chrX 5884160 5884192 chrX 5884401 5884433 pogo 7 241 1.5 1.5 1.5 2.8 273 chrX 5884160 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884433 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-732 1790 chrX 5974005 5974029 chrX 5974095 5974119 7 90 1.5 1.5 1.5 2.8 114 chrX 5974005 intron Grip + chrX 5974062 intron Grip + chrX 5974119 intron Grip + chrX_7_5970001 chrX_5970001 RAL-732 1791 chrX 6003280 6003306 chrX 6003361 6003387 11 81 0.0 2.0 1.0 5.5 107 chrX 6003280 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003387 intron CR44498 + chrX_11_6000001 chrX_6000001 RAL-732 1792 chrX 6171587 6171608 chrX 6179019 6179041 Quasimodo 6 7433 2.0 1.5 1.8 2.1 7454 chrX 6171587 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179041 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-732 1793 chrX 6335230 6335240 chrX 6337737 6337750 Tirant 4 2508 0.0 4.5 2.2 1.2 2520 chrX 6335230 intergenic not near genes chrX 6336490 intergenic not near genes chrX 6337750 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-732 1794 chrX 6392868 6392904 chrX 6397633 6397668 Doc 9 4765 2.5 0.5 1.5 3.6 4800 chrX 6392868 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397668 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-732 1795 chrX 6562817 6562850 chrX 6571299 6571332 Tirant 20 8482 6.0 7.5 6.8 2.6 8515 chrX 6562817 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571332 intron CG34417 + chrX_20_6565001 chrX_6565001 RAL-732 1796 chrX 6737522 6737542 chrX 6737603 6737621 5 81 0.0 1.0 0.5 3.3 99 chrX 6737522 intron CG3168 - chrX 6737572 intron CG3168 - chrX 6737621 intron CG3168 - chrX_5_6735001 chrX_6735001 RAL-732 1797 chrX 6859562 6859575 chrX 6859975 6859988 4 412 0.5 0.0 0.2 3.3 426 chrX 6859562 intron CG14434 - chrX 6859775 intron CG14434 - chrX 6859988 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-732 1798 chrX 6865792 6865796 chrX 6865873 6865877 4 81 1.5 7.5 4.5 0.7 85 chrX 6865792 intron CG14434 - chrX 6865834 intron CG14434 - chrX 6865877 intron CG14434 - chrX_4_6865001 chrX_6865001 RAL-732 1799 chrX 7023599 7023633 chrX 7030989 7031023 Tabor 11 7390 3.5 1.5 2.5 3.1 7424 chrX 7023599 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031023 intron CG12541 - chrX_11_7025001 chrX_7025001 RAL-732 1800 chrX 7048628 7048654 chrX 7048706 7048731 13 78 3.0 2.5 2.8 3.4 103 chrX 7048628 intron CG12541 - chrX 7048680 intron CG12541 - chrX 7048731 intron CG12541 - chrX_13_7045001 chrX_7045001 RAL-732 1801 chrX 7125247 7125275 chrX 7134406 7134434 roo 7 9159 1.5 3.5 2.5 2.0 9187 chrX 7125247 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134434 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-732 1802 chrX 7189558 7189585 chrX 7189667 7189694 4 108 2.0 1.5 1.8 1.4 136 chrX 7189558 intron,intron CG9650 +,CR44357 - chrX 7189626 intron,intron CG9650 +,CR44357 - chrX 7189694 intron,intron CG9650 +,CR44357 - chrX_4_7185001 chrX_7185001 RAL-732 1803 chrX 7409513 7409531 chrX 7409593 7409612 7 81 3.0 1.5 2.2 2.2 99 chrX 7409513 intergenic not near genes chrX 7409562 intergenic not near genes chrX 7409612 intergenic not near genes chrX_7_7405001 chrX_7405001 RAL-732 1804 chrX 7702903 7702931 chrX 7703342 7703370 jockey 9 438 3.0 3.0 3.0 2.2 467 chrX 7702903 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-732 1805 chrX 7737174 7737185 chrX 7737256 7737267 7 82 1.0 1.5 1.2 3.2 93 chrX 7737174 intron Tom40 + chrX 7737220 intron Tom40 + chrX 7737267 intron Tom40 + chrX_7_7735001 chrX_7735001 RAL-732 1806 chrX 7752931 7752959 chrX 7753008 7753036 9 77 2.5 3.5 3.0 2.2 105 chrX 7752931 intergenic not near genes chrX 7752984 intergenic not near genes chrX 7753036 intergenic not near genes chrX_9_7750001 chrX_7750001 RAL-732 1807 chrX 7780035 7780060 chrX 7780328 7780353 4 293 3.0 0.5 1.8 1.4 318 chrX 7780035 intergenic not near genes chrX 7780194 intergenic not near genes chrX 7780353 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-732 1808 chrX 7832434 7832465 chrX 7832523 7832554 4 89 3.5 1.5 2.5 1.1 120 chrX 7832434 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832554 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-732 1809 chrX 7845725 7845757 chrX 7847214 7847248 hopper2 7 1491 1.5 0.5 1.0 3.5 1523 chrX 7845725 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847248 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-732 1810 chrX 8031429 8031462 chrX 8035738 8035771 Juan 10 4309 2.5 4.0 3.2 2.4 4342 chrX 8031429 intergenic not near genes chrX 8033600 intergenic not near genes chrX 8035771 3` UTR CG2233 - chrX_10_8030001 chrX_8030001 RAL-732 1811 chrX 8085577 8085597 chrX 8085663 8085683 11 86 2.5 1.5 2.0 3.7 106 chrX 8085577 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085683 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-732 1812 chrX 8421464 8421494 chrX 8421556 8421586 7 92 1.5 4.0 2.8 1.8 122 chrX 8421464 intron Trf2 + chrX 8421525 intron Trf2 + chrX 8421586 intron Trf2 + chrX_7_8420001 chrX_8420001 RAL-732 1813 chrX 8533962 8533991 chrX 8534042 8534071 13 80 1.0 2.5 1.8 4.6 109 chrX 8533962 intron Nrg + chrX 8534016 intron Nrg + chrX 8534071 intron Nrg + chrX_13_8530001 chrX_8530001 RAL-732 1814 chrX 8922330 8922363 chrX 8922764 8922796 jockey 10 434 0.5 4.0 2.2 3.1 466 chrX 8922330 intron rdgA + chrX 8922563 intron rdgA + chrX 8922796 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-732 1815 chrX 8927589 8927613 chrX 8929858 8929881 NOF 4 2269 2.5 4.0 3.2 1.0 2292 chrX 8927589 intron rdgA + chrX 8928735 intron rdgA + chrX 8929881 intron rdgA + chrX_4_8925001 chrX_8925001 RAL-732 1816 chrX 8979997 8980003 chrX 8980078 8980083 4 81 3.5 0.0 1.8 1.4 86 chrX 8979997 intron,intron rdgA +,CR43836 - chrX 8980040 intron,intron rdgA +,CR43836 - chrX 8980083 intron,intron rdgA +,CR43836 - chrX_4_8980001 chrX_8980001 RAL-732 1817 chrX 9129478 9129507 chrX 9129564 9129592 9 86 3.5 1.5 2.5 2.6 114 chrX 9129478 intron fend - chrX 9129535 intron fend - chrX 9129592 intron fend - chrX_9_9125001 chrX_9125001 RAL-732 1818 chrX 9210851 9210858 chrX 9210927 9210934 4 76 6.5 0.5 3.5 0.9 83 chrX 9210851 5` UTR CG12119 - chrX 9210892 intergenic CG12119 - chrX 9210934 intergenic CG12119 - chrX_4_9210001 chrX_9210001 RAL-732 1819 chrX 9337946 9337968 chrX 9338037 9338060 5 92 1.0 2.5 1.8 1.8 114 chrX 9337946 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338060 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-732 1820 chrX 9473852 9473884 chrX 9474087 9474119 9 234 0.5 0.5 0.5 6.0 267 chrX 9473852 intron mgl - chrX 9473986 intron mgl - chrX 9474119 intron mgl - chrX_9_9470001 chrX_9470001 RAL-732 1821 chrX 9508133 9508155 chrX 9509651 9509672 jockey 8 1518 1.5 2.0 1.8 2.9 1539 chrX 9508133 intron CG32700 - chrX 9508902 intron CG32700 - chrX 9509672 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-732 1822 chrX 9575792 9575823 chrX 9576114 9576147 mdg3 10 323 1.5 2.0 1.8 3.6 355 chrX 9575792 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-732 1823 chrX 9738141 9738174 chrX 9738554 9738586 6 413 2.0 0.5 1.2 2.7 445 chrX 9738141 intron Sp1 + chrX 9738364 intron Sp1 + chrX 9738586 intron Sp1 + chrX_6_9735001 chrX_9735001 RAL-732 1824 chrX 9845361 9845361 chrX 14544906 14544908 5 4699547 11.5 10.5 11.0 0.4 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_5_12195001 chrX_12195001 RAL-732 1825 chrX 9859432 9859445 chrX 9859706 9859722 4 276 3.0 3.5 3.2 1.0 290 chrX 9859432 intergenic not near genes chrX 9859577 intergenic not near genes chrX 9859722 intergenic not near genes chrX_4_9855001 chrX_9855001 RAL-732 1826 chrX 10401395 10401414 chrX 10401476 10401495 5 81 3.0 2.5 2.8 1.3 100 chrX 10401395 intron flw + chrX 10401445 intron flw + chrX 10401495 intron flw + chrX_5_10400001 chrX_10400001 RAL-732 1827 chrX 10428950 10428970 chrX 10429138 10429157 5 188 2.0 2.5 2.2 1.6 207 chrX 10428950 intron CG32683 - chrX 10429054 intron CG32683 - chrX 10429157 intron CG32683 - chrX_5_10425001 chrX_10425001 RAL-732 1828 chrX 10453073 10453087 chrX 10453264 10453278 6 191 0.5 0.5 0.5 4.0 205 chrX 10453073 intron CG32683 - chrX 10453176 intron CG32683 - chrX 10453278 intron CG32683 - chrX_6_10450001 chrX_10450001 RAL-732 1829 chrX 10686049 10686077 chrX 10691186 10691214 roo 4 5137 2.5 1.0 1.8 1.4 5165 chrX 10686049 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691214 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-732 1830 chrX 10987461 10987488 chrX 10987555 10987582 8 94 1.5 1.5 1.5 3.2 121 chrX 10987461 intron CG42339 - chrX 10987522 intron CG42339 - chrX 10987582 intron CG42339 - chrX_8_10985001 chrX_10985001 RAL-732 1831 chrX 11233883 11233911 chrX 11233969 11233997 5 86 1.0 3.0 2.0 1.7 114 chrX 11233883 intron CG44422 - chrX 11233940 intron CG44422 - chrX 11233997 intron CG44422 - chrX_5_11230001 chrX_11230001 RAL-732 1832 chrX 11268562 11268594 chrX 11270054 11270087 hopper2 8 1493 1.5 1.5 1.5 3.2 1525 chrX 11268562 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270087 intron CG44422 - chrX_8_11265001 chrX_11265001 RAL-732 1833 chrX 11312059 11312094 chrX 11319412 11319441 Stalker2 6 7352 0.5 2.0 1.2 2.7 7382 chrX 11312059 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319441 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-732 1834 chrX 11351505 11351535 chrX 11351603 11351634 10 98 2.5 2.0 2.2 3.1 129 chrX 11351505 intron CG1737 + chrX 11351570 intron CG1737 + chrX 11351634 intron CG1737 + chrX_10_11350001 chrX_11350001 RAL-732 1835 chrX 11379768 11379792 chrX 11379913 11379937 5 145 2.0 2.5 2.2 1.6 169 chrX 11379768 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379937 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-732 1836 chrX 11627834 11627852 chrX 11627925 11627943 4 91 2.0 1.5 1.8 1.4 109 chrX 11627834 intron Ptp10D + chrX 11627888 intron Ptp10D + chrX 11627943 intron Ptp10D + chrX_4_11625001 chrX_11625001 RAL-732 1837 chrX 11633417 11633438 chrX 11640471 11640492 297 4 7054 1.5 2.5 2.0 1.3 7075 chrX 11633417 intron Ptp10D + chrX 11636954 intron Ptp10D + chrX 11640492 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-732 1838 chrX 11936574 11936586 chrX 11936673 11936684 6 99 0.0 2.5 1.2 2.7 110 chrX 11936574 intron cac - chrX 11936629 intron cac - chrX 11936684 intron cac - chrX_6_11935001 chrX_11935001 RAL-732 1839 chrX 12053529 12053563 chrX 12054057 12054091 6 528 1.5 1.5 1.5 2.4 562 chrX 12053529 intron,intron CR43960 +,Ten-a + chrX 12053810 intron,intron CR43960 +,Ten-a + chrX 12054091 intron,intron CR43960 +,Ten-a + chrX_6_12050001 chrX_12050001 RAL-732 1840 chrX 12094033 12094064 chrX 12094125 12094155 5 92 0.5 2.0 1.2 2.3 122 chrX 12094033 intron,intron CR43960 +,Ten-a + chrX 12094094 intron,intron CR43960 +,Ten-a + chrX 12094155 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-732 1841 chrX 12176738 12176763 chrX 12176813 12176839 7 76 1.5 4.0 2.8 1.8 101 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-732 1842 chrX 12350775 12350799 chrX 12350856 12350880 6 81 1.5 0.0 0.8 3.3 105 chrX 12350775 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350880 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-732 1843 chrX 12356857 12356880 chrX 12356967 12356992 9 112 1.0 5.5 3.2 2.1 135 chrX 12356857 intergenic not near genes chrX 12356924 intergenic not near genes chrX 12356992 intergenic not near genes chrX_9_12355001 chrX_12355001 RAL-732 1844 chrX 12430947 12430963 chrX 12431025 12431041 6 78 0.5 1.5 1.0 3.0 94 chrX 12430947 intergenic not near genes chrX 12430994 intergenic not near genes chrX 12431041 intergenic not near genes chrX_6_12430001 chrX_12430001 RAL-732 1845 chrX 12737604 12737630 chrX 12737680 12737706 7 76 2.5 1.5 2.0 2.3 102 chrX 12737604 intron Smr - chrX 12737655 intron Smr - chrX 12737706 intron Smr - chrX_7_12735001 chrX_12735001 RAL-732 1846 chrX 12960766 12960793 chrX 12960847 12960874 4 81 2.0 1.0 1.5 1.6 108 chrX 12960766 3` UTR CG32642 + chrX 12960820 intergenic CG32642 + chrX 12960874 intergenic CG32642 + chrX_4_12960001 chrX_12960001 RAL-732 1847 chrX 12971690 12971708 chrX 12971767 12971785 6 77 4.5 1.5 3.0 1.5 95 chrX 12971690 intron,exon CR43636 -,CG15721 + chrX 12971738 intron,exon CR43636 -,CG15721 + chrX 12971785 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-732 1848 chrX 13146600 13146627 chrX 13146688 13146715 5 88 0.0 0.5 0.2 4.2 115 chrX 13146600 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146715 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-732 1849 chrX 13236883 13236899 chrX 13236968 13236984 4 85 0.0 1.5 0.8 2.2 101 chrX 13236883 intron mew - chrX 13236934 intron mew - chrX 13236984 intron mew - chrX_4_13235001 chrX_13235001 RAL-732 1850 chrX 13269206 13269211 chrX 13269282 13269287 4 76 0.0 0.0 0.0 4.0 81 chrX 13269206 intron HDAC4 - chrX 13269246 intron HDAC4 - chrX 13269287 intron HDAC4 - chrX_4_13265001 chrX_13265001 RAL-732 1851 chrX 13374848 13374863 chrX 13374928 13374943 5 80 1.0 0.5 0.8 2.8 95 chrX 13374848 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374943 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-732 1852 chrX 13401488 13401517 chrX 13401840 13401869 jockey 5 352 1.0 0.0 0.5 3.3 381 chrX 13401488 intergenic CG1673 +,CG12725 - chrX 13401678 intergenic CG12725 -,CG1673 + chrX 13401869 3` UTR CG12725 - chrX_5_13400001 chrX_13400001 RAL-732 1853 chrX 13442148 13442168 chrX 13442239 13442259 6 91 2.5 2.0 2.2 1.9 111 chrX 13442148 intergenic not near genes chrX 13442204 intergenic not near genes chrX 13442259 intergenic not near genes chrX_6_13440001 chrX_13440001 RAL-732 1854 chrX 13843389 13843408 chrX 13843542 13843561 4 153 1.5 2.0 1.8 1.4 172 chrX 13843389 intron AMPdeam - chrX 13843475 intron AMPdeam - chrX 13843561 intron AMPdeam - chrX_4_13840001 chrX_13840001 RAL-732 1855 chrX 13935516 13935527 chrX 13935599 13935610 5 83 6.0 5.0 5.5 0.8 94 chrX 13935516 intron mamo - chrX 13935563 intron mamo - chrX 13935610 intron mamo - chrX_5_13935001 chrX_13935001 RAL-732 1856 chrX 13937980 13938007 chrX 13941251 13941278 I-element 5 3271 0.5 2.0 1.2 2.3 3298 chrX 13937980 intron mamo - chrX 13939629 intron mamo - chrX 13941278 intron mamo - chrX_5_13935001 chrX_13935001 RAL-732 1857 chrX 13943273 13943303 chrX 13943364 13943394 8 91 0.0 2.5 1.2 3.6 121 chrX 13943273 intron mamo - chrX 13943334 intron mamo - chrX 13943394 intron mamo - chrX_8_13940001 chrX_13940001 RAL-732 1858 chrX 14105021 14105045 chrX 14114172 14114196 roo 7 9151 4.5 0.5 2.5 2.0 9175 chrX 14105021 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114196 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-732 1859 chrX 14131487 14131523 chrX 14131568 14131604 9 81 0.5 4.0 2.2 2.8 117 chrX 14131487 intergenic not near genes chrX 14131546 intergenic not near genes chrX 14131604 intergenic not near genes chrX_9_14130001 chrX_14130001 RAL-732 1860 chrX 14312781 14312794 chrX 14312862 14312875 4 81 0.0 0.0 0.0 4.0 94 chrX 14312781 intergenic not near genes chrX 14312828 intergenic not near genes chrX 14312875 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-732 1861 chrX 8378774 8378777 chrX 14492115 14492118 4 6113342 6.0 8.5 7.2 0.5 6113344 chrX 8378774 intergenic not near genes chrX 11435446 exon Evi5 - chrX 14492118 intergenic not near genes chrX_4_11435001 chrX_11435001 RAL-732 1862 chrX 14531368 14531382 chrX 14531457 14531471 4 89 2.5 2.0 2.2 1.2 103 chrX 14531368 intergenic not near genes chrX 14531420 intergenic not near genes chrX 14531471 intergenic not near genes chrX_4_14530001 chrX_14530001 RAL-732 1863 chrX 14589693 14589706 chrX 14589934 14589947 pogo 4 241 0.5 0.5 0.5 2.7 254 chrX 14589693 intron CG9413 - chrX 14589820 intron CG9413 - chrX 14589947 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-732 1864 chrX 14806762 14806789 chrX 14806850 14806876 6 88 0.0 0.0 0.0 6.0 114 chrX 14806762 intron rut - chrX 14806819 intron rut - chrX 14806876 intron rut - chrX_6_14805001 chrX_14805001 RAL-732 1865 chrX 14816829 14816841 chrX 14816907 14816919 5 78 0.5 0.5 0.5 3.3 90 chrX 14816829 intron rut - chrX 14816874 intron rut - chrX 14816919 intron rut - chrX_5_14815001 chrX_14815001 RAL-732 1866 chrX 14818767 14818791 chrX 14823971 14823990 copia 4 5203 3.5 1.0 2.2 1.2 5223 chrX 14818767 intron rut - chrX 14821378 intron rut - chrX 14823990 intron rut - chrX_4_14820001 chrX_14820001 RAL-732 1867 chrX 14888951 14888964 chrX 14889037 14889050 4 86 3.5 2.0 2.8 1.1 99 chrX 14888951 intron,intron Flo2 +,CG9514 - chrX 14889000 intron,intron Flo2 +,CG9514 - chrX 14889050 intron,intron Flo2 +,CG9514 - chrX_4_14885001 chrX_14885001 RAL-732 1868 chrX 14897817 14897852 chrX 14897901 14897936 12 84 0.0 2.5 1.2 5.5 119 chrX 14897817 intron Flo2 + chrX 14897876 intron Flo2 + chrX 14897936 intron Flo2 + chrX_12_14895001 chrX_14895001 RAL-732 1869 chrX 15081342 15081371 chrX 15081427 15081456 9 85 1.0 5.5 3.2 2.1 114 chrX 15081342 intergenic CG33177 +,CR44662 - chrX 15081399 5` UTR CG33177 + chrX 15081456 5` UTR CG33177 + chrX_9_15080001 chrX_15080001 RAL-732 1870 chrX 15228496 15228527 chrX 15228742 15228773 6 246 0.5 0.5 0.5 4.0 277 chrX 15228496 intergenic CG9101 - chrX 15228634 intergenic CG9101 - chrX 15228773 3` UTR CG9101 - chrX_6_15225001 chrX_15225001 RAL-732 1871 chrX 15259288 15259306 chrX 15259376 15259393 6 88 2.5 3.0 2.8 1.6 105 chrX 15259288 intergenic not near genes chrX 15259340 intergenic not near genes chrX 15259393 intergenic not near genes chrX_6_15255001 chrX_15255001 RAL-732 1872 chrX 15413049 15413083 chrX 15417351 15417385 Juan 13 4302 3.0 2.5 2.8 3.4 4336 chrX 15413049 intron Cngl - chrX 15415217 intron Cngl - chrX 15417385 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-732 1873 chrX 15435689 15435704 chrX 15436122 15436137 rover 6 433 1.5 5.5 3.5 1.3 448 chrX 15435689 intron Cngl - chrX 15435913 intron Cngl - chrX 15436137 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-732 1874 chrX 15536702 15536706 chrX 15536777 15536781 4 76 7.0 9.5 8.2 0.4 79 chrX 15536702 intron Ac13E - chrX 15536742 intron Ac13E - chrX 15536781 intron Ac13E - chrX_4_15535001 chrX_15535001 RAL-732 1875 chrX 15543266 15543292 chrX 15543347 15543371 4 81 1.5 1.0 1.2 1.8 105 chrX 15543266 intron Ac13E - chrX 15543318 intron Ac13E - chrX 15543371 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-732 1876 chrX 15589457 15589460 chrX 15589636 15589639 4 179 2.5 6.5 4.5 0.7 182 chrX 15589457 intron CG9220 - chrX 15589548 intron CG9220 - chrX 15589639 exon CG9220 - chrX_4_15585001 chrX_15585001 RAL-732 1877 chrX 15666216 15666227 chrX 15666293 15666304 4 77 3.5 3.5 3.5 0.9 88 chrX 15666216 intergenic not near genes chrX 15666260 intergenic not near genes chrX 15666304 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-732 1878 chrX 15671200 15671210 chrX 15671287 15671297 5 87 2.0 0.0 1.0 2.5 97 chrX 15671200 intergenic CG15646 - chrX 15671248 intergenic CG15646 - chrX 15671297 intergenic CG15646 - chrX_5_15670001 chrX_15670001 RAL-732 1879 chrX 15678057 15678068 chrX 15678134 15678143 5 76 1.0 3.5 2.2 1.6 86 chrX 15678057 intergenic CG12708 + chrX 15678100 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-732 1880 chrX 16492652 16492668 chrX 16498229 16498245 mdg3 6 5577 1.0 3.0 2.0 2.0 5593 chrX 16492652 intron para - chrX 16495448 intron para - chrX 16498245 intron para - chrX_6_16495001 chrX_16495001 RAL-732 1881 chrX 16529428 16529436 chrX 16529536 16529547 4 110 0.0 2.0 1.0 2.0 119 chrX 16529428 intron para - chrX 16529488 intron para - chrX 16529547 intron para - chrX_4_16525001 chrX_16525001 RAL-732 1882 chrX 16841405 16841424 chrX 16841482 16841502 6 77 2.0 0.5 1.2 2.7 97 chrX 16841405 exon RSG7 - chrX 16841454 intron RSG7 - chrX 16841502 intron RSG7 - chrX_6_16840001 chrX_16840001 RAL-732 1883 chrX 16914367 16914388 chrX 16914445 16914466 4 78 1.0 2.0 1.5 1.6 99 chrX 16914367 intron CG4928 + chrX 16914416 intron CG4928 + chrX 16914466 intron CG4928 + chrX_4_16910001 chrX_16910001 RAL-732 1884 chrX 17011968 17012000 chrX 17012051 17012081 4 82 4.0 2.0 3.0 1.0 113 chrX 17011968 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012081 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-732 1885 chrX 17047009 17047042 chrX 17047129 17047162 9 120 1.5 3.5 2.5 2.6 153 chrX 17047009 intron CG45002 - chrX 17047086 intron CG45002 - chrX 17047162 intron CG45002 - chrX_9_17045001 chrX_17045001 RAL-732 1886 chrX 17061585 17061599 chrX 17061708 17061722 4 123 0.5 6.5 3.5 0.9 137 chrX 17061585 intron CG45002 - chrX 17061654 intron CG45002 - chrX 17061722 intron CG45002 - chrX_4_17060001 chrX_17060001 RAL-732 1887 chrX 17221835 17221851 chrX 17221921 17221937 4 86 1.5 3.0 2.2 1.2 102 chrX 17221835 intron CG5172 + chrX 17221886 intron CG5172 + chrX 17221937 intron CG5172 + chrX_4_17220001 chrX_17220001 RAL-732 1888 chrX 17282874 17282902 chrX 17282952 17282980 9 78 2.0 0.0 1.0 4.5 106 chrX 17282874 intron CG5445 + chrX 17282927 5` UTR CG5445 + chrX 17282980 intron CG5445 + chrX_9_17280001 chrX_17280001 RAL-732 1889 chrX 17352591 17352620 chrX 17352694 17352723 5 103 0.0 1.5 0.8 2.8 132 chrX 17352591 intergenic not near genes chrX 17352657 intergenic not near genes chrX 17352723 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-732 1890 chrX 17680899 17680925 chrX 17680976 17681002 9 77 1.0 2.0 1.5 3.6 103 chrX 17680899 intron chas - chrX 17680950 intron chas - chrX 17681002 intron chas - chrX_9_17680001 chrX_17680001 RAL-732 1891 chrX 17731118 17731129 chrX 17731194 17731205 4 76 0.5 3.0 1.8 1.4 87 chrX 17731118 intron CG42684 + chrX 17731162 intron CG42684 + chrX 17731205 intron CG42684 + chrX_4_17730001 chrX_17730001 RAL-732 1892 chrX 17740376 17740398 chrX 17740451 17740475 6 76 1.0 3.5 2.2 1.9 99 chrX 17740376 intron CG42684 + chrX 17740426 intron CG42684 + chrX 17740475 intron CG42684 + chrX_6_17740001 chrX_17740001 RAL-732 1893 chrX 17908672 17908702 chrX 17908756 17908786 11 84 2.5 4.0 3.2 2.6 114 chrX 17908672 exon Vps4 + chrX 17908729 intron Vps4 + chrX 17908786 intron Vps4 + chrX_11_17905001 chrX_17905001 RAL-732 1894 chrX 18126601 18126823 chrX 18126724 18126900 8 112 2.0 1.5 1.8 2.9 299 chrX 18126601 intron CG32553 - chrX 18126750 intron CG32553 - chrX 18126900 intron CG32553 - chrX_8_18125001 chrX_18125001 RAL-732 1895 chrX 18281548 18281580 chrX 18281630 18281662 6 82 1.0 1.0 1.0 3.0 114 chrX 18281548 intron upd3 + chrX 18281605 intron upd3 + chrX 18281662 intron upd3 + chrX_6_18280001 chrX_18280001 RAL-732 1896 chrX 18429497 18429519 chrX 18434808 18434830 Transpac 4 5311 2.5 2.5 2.5 1.1 5333 chrX 18429497 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434830 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-732 1897 chrX 18645013 18645029 chrX 18645111 18645127 5 98 3.0 1.5 2.2 1.6 114 chrX 18645013 intron Rip11 - chrX 18645070 intron Rip11 - chrX 18645127 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-732 1898 chrX 18688257 18688272 chrX 18688376 18688395 6 122 3.0 0.5 1.8 2.1 138 chrX 18688257 3` UTR phm + chrX 18688326 3` UTR phm + chrX 18688395 3` UTR phm + chrX_6_18685001 chrX_18685001 RAL-732 1899 chrX 18888664 18888679 chrX 18888749 18888764 4 85 0.0 2.0 1.0 2.0 100 chrX 18888664 3` UTR CG7332 + chrX 18888714 3` UTR CG7332 + chrX 18888764 3` UTR CG7332 + chrX_4_18885001 chrX_18885001 RAL-732 1900 chrX 19014367 19014383 chrX 19014446 19014459 5 78 2.5 5.5 4.0 1.0 92 chrX 19014367 intron CG43759 + chrX 19014413 intron CG43759 + chrX 19014459 intron CG43759 + chrX_5_19010001 chrX_19010001 RAL-732 1901 chrX 19098757 19098779 chrX 19098835 19098857 5 78 2.5 1.0 1.8 1.8 100 chrX 19098757 intergenic not near genes chrX 19098807 intergenic not near genes chrX 19098857 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-732 1902 chrX 13057298 13057300 chrX 19242812 19242814 13 6185514 8.0 8.0 8.0 1.4 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_13_16150001 chrX_16150001 RAL-732 1903 chrX 19339744 19339769 chrX 19339820 19339845 5 76 0.5 2.0 1.2 2.3 101 chrX 19339744 intron nAChRalpha7 - chrX 19339794 intron nAChRalpha7 - chrX 19339845 intron nAChRalpha7 - chrX_5_19335001 chrX_19335001 RAL-732 1904 chrX 19365700 19365720 chrX 19366007 19366029 8 308 16.5 16.5 16.5 0.5 329 chrX 19365700 intron kek5 + chrX 19365864 intron kek5 + chrX 19366029 intron kek5 + chrX_8_19365001 chrX_19365001 RAL-732 1905 chrX 19380163 19380187 chrX 19380404 19380428 pogo 6 241 2.0 1.5 1.8 2.1 265 chrX 19380163 intron kek5 + chrX 19380296 intron kek5 + chrX 19380428 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-732 1906 chrX 19447089 19447092 chrX 19447348 19447351 4 259 3.5 2.0 2.8 1.1 262 chrX 19447089 intron kek5 + chrX 19447220 intron kek5 + chrX 19447351 intron kek5 + chrX_4_19445001 chrX_19445001 RAL-732 1907 chrX 19472121 19472150 chrX 19472691 19472719 jockey 4 570 1.5 1.5 1.5 1.6 598 chrX 19472121 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472719 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-732 1908 chrX 19710073 19710101 chrX 19711857 19711887 S-element 11 1785 2.0 2.5 2.2 3.4 1814 chrX 19710073 intron meso18E - chrX 19710980 intron meso18E - chrX 19711887 intron meso18E - chrX_11_19710001 chrX_19710001 RAL-732 1909 chrX 19744638 19744660 chrX 19744764 19744786 4 126 15.5 20.0 17.8 0.2 148 chrX 19744638 5` UTR,exon CG33932 +,Rpp20 + chrX 19744712 intron,intron CG33932 +,Rpp20 + chrX 19744786 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-732 1910 chrX 19881467 19881483 chrX 19881546 19881564 5 81 0.5 3.0 1.8 1.8 97 chrX 19881467 intron Hers + chrX 19881516 intron Hers + chrX 19881564 intron Hers + chrX_5_19880001 chrX_19880001 RAL-732 1911 chrX 19992418 19992435 chrX 19992491 19992508 6 75 1.5 6.5 4.0 1.2 90 chrX 19992418 intergenic not near genes chrX 19992463 intergenic not near genes chrX 19992508 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-732 1912 chrX 20052785 20052814 chrX 20052869 20052898 6 84 2.5 0.0 1.2 2.7 113 chrX 20052785 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052898 intron Dop2R - chrX_6_20050001 chrX_20050001 RAL-732 1913 chrX 20124087 20124103 chrX 20124226 20124242 4 139 1.0 0.0 0.5 2.7 155 chrX 20124087 intron CG34331 + chrX 20124164 intron CG34331 + chrX 20124242 intron CG34331 + chrX_4_20120001 chrX_20120001 RAL-732 1914 chrX 20150384 20150394 chrX 20150473 20150483 5 89 0.0 5.5 2.8 1.3 99 chrX 20150384 intron CG9572 + chrX 20150434 intron CG9572 + chrX 20150483 intron CG9572 + chrX_5_20150001 chrX_20150001 RAL-732 1915 chrX 20312883 20312902 chrX 20312961 20312980 7 77 1.5 1.0 1.2 3.2 97 chrX 20312883 intron CG1504 - chrX 20312932 intron CG1504 - chrX 20312980 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-732 1916 chrX 20321769 20321779 chrX 20321867 20321871 4 96 3.5 0.5 2.0 1.3 102 chrX 20321769 intron CG1504 - chrX 20321820 intron CG1504 - chrX 20321871 intron CG1504 - chrX_4_20320001 chrX_20320001 RAL-732 1917 chrX 20362872 20362878 chrX 20362949 20362955 5 77 4.0 0.0 2.0 1.7 83 chrX 20362872 intergenic not near genes chrX 20362914 intergenic not near genes chrX 20362955 intergenic not near genes chrX_5_20360001 chrX_20360001 RAL-732 1918 chrX 20377326 20377349 chrX 20378793 20378816 hobo 10 1467 0.5 3.0 1.8 3.6 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-732 1919 chrX 20426179 20426212 chrX 20428374 20428406 9 2196 25.0 23.0 24.0 0.4 2227 chrX 20426179 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_9_20425001 chrX_20425001 RAL-732 1920 chrX 20468014 20468033 chrX 20468103 20468120 4 88 0.5 0.0 0.2 3.3 106 chrX 20468014 intron GstT3 + chrX 20468067 intron GstT3 + chrX 20468120 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-732 1921 chrX 20504128 20504158 chrX 20505649 20505679 transib2 8 1521 2.5 1.0 1.8 2.9 1551 chrX 20504128 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505679 intron RhoGAP19D - chrX_8_20500001 chrX_20500001 RAL-732 1922 chrX 20517248 20517255 chrX 20517334 20517341 4 86 4.5 0.0 2.2 1.2 93 chrX 20517248 intron Tak1 - chrX 20517294 intron Tak1 - chrX 20517341 intron Tak1 - chrX_4_20515001 chrX_20515001 RAL-732 1923 chrX 20528603 20528627 chrX 20528951 20528975 5 348 3.5 2.0 2.8 1.3 372 chrX 20528603 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20528975 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-732 1924 chrX 20534431 20534452 chrX 20534576 20534597 5 145 0.5 2.5 1.5 2.0 166 chrX 20534431 intergenic not near genes chrX 20534514 intergenic not near genes chrX 20534597 intergenic not near genes chrX_5_20530001 chrX_20530001 RAL-732 1925 chrX 20583732 20583753 chrX 20583898 20583923 9 170 2.0 0.0 1.0 4.5 191 chrX 20583732 intergenic not near genes chrX 20583828 intergenic not near genes chrX 20583923 intergenic not near genes chrX_9_20580001 chrX_20580001 RAL-732 1926 chrX 20622843 20622865 chrX 20622942 20622964 4 99 2.0 1.0 1.5 1.6 121 chrX 20622843 intron RunxA - chrX 20622904 intron RunxA - chrX 20622964 intron RunxA - chrX_4_20620001 chrX_20620001 RAL-732 1927 chrX 20741579 20741608 chrX 20741655 20741684 4 76 0.5 0.0 0.2 3.3 105 chrX 20741579 intergenic not near genes chrX 20741632 intergenic not near genes chrX 20741684 intergenic not near genes chrX_4_20740001 chrX_20740001 RAL-732 1928 chrX 20791559 20791566 chrX 20791657 20791666 4 100 2.5 1.0 1.8 1.4 107 chrX 20791559 intron shakB - chrX 20791612 intron shakB - chrX 20791666 intron shakB - chrX_4_20790001 chrX_20790001 RAL-732 1929 chrX 20824091 20824100 chrX 20824195 20824204 4 104 1.5 2.5 2.0 1.3 113 chrX 20824091 intron,intron shakB -,CG15450 + chrX 20824148 intron,intron shakB -,CG15450 + chrX 20824204 intron,intron shakB -,CG15450 + chrX_4_20820001 chrX_20820001 RAL-732 1930 chrX 20940718 20940756 chrX 20942187 20942225 hobo 9 1469 1.0 1.0 1.0 4.5 1507 chrX 20940718 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-732 1931 chrX 20948104 20948117 chrX 20948207 20948220 4 103 1.5 2.0 1.8 1.4 116 chrX 20948104 intergenic not near genes chrX 20948162 intergenic not near genes chrX 20948220 intergenic not near genes chrX_4_20945001 chrX_20945001 RAL-732 1932 chrX 21061870 21061894 chrX 21062355 21062378 roo 5 485 0.5 1.0 0.8 2.8 508 chrX 21061870 intron bves + chrX 21062124 intron bves + chrX 21062378 intron,3` UTR bves +,CG32512 - chrX_5_21060001 chrX_21060001 RAL-732 1933 chrX 21077595 21077607 chrX 21077684 21077696 4 89 2.0 1.5 1.8 1.4 101 chrX 21077595 intron bves + chrX 21077646 intron bves + chrX 21077696 intron bves + chrX_4_21075001 chrX_21075001 RAL-732 1934 chrX 21086132 21086158 chrX 21087161 21087187 jockey 4 1029 1.0 0.5 0.8 2.2 1055 chrX 21086132 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087187 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-732 1935 chrX 21088047 21088075 chrX 21088179 21088206 4 132 1.5 0.5 1.0 2.0 159 chrX 21088047 intergenic not near genes chrX 21088126 intergenic not near genes chrX 21088206 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-732 1936 chrX 21264733 21264764 chrX 21264809 21264840 10 76 1.0 4.0 2.5 2.9 107 chrX 21264733 intron CG32521 - chrX 21264786 intron CG32521 - chrX 21264840 intron CG32521 - chrX_10_21260001 chrX_21260001 RAL-732 1937 chrX 21330813 21330834 chrX 21330889 21330910 6 76 5.0 2.0 3.5 1.3 97 chrX 21330813 3` UTR tty - chrX 21330862 3` UTR tty - chrX 21330910 3` UTR tty - chrX_6_21330001 chrX_21330001 RAL-732 1938 chrX 21458691 21458707 chrX 21464127 21464143 Ivk 4 5436 3.5 2.0 2.8 1.1 5452 chrX 21458691 intergenic not near genes chrX 21461417 intergenic not near genes chrX 21464143 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-732 1939 chrX 21474409 21474435 chrX 21474775 21474801 1731 5 366 2.5 1.0 1.8 1.8 392 chrX 21474409 intergenic not near genes chrX 21474605 intergenic not near genes chrX 21474801 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-732 1940 chrX 21517000 21517020 chrX 21517078 21517097 4 78 2.5 3.5 3.0 1.0 97 chrX 21517000 intron CR45082 - chrX 21517048 intron CR45082 - chrX 21517097 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-732 1941 chrX 21668263 21668288 chrX 21668348 21668373 6 85 1.5 1.0 1.2 2.7 110 chrX 21668263 intergenic not near genes chrX 21668318 intergenic not near genes chrX 21668373 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-732 1942 chrX 22448269 22448284 chrX 22448408 22448423 4 139 2.0 0.5 1.2 1.8 154 chrX 22448269 intron CG14615 - chrX 22448346 intron CG14615 - chrX 22448423 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-732 1943 chrX 22509449 22509456 chrX 22509527 22509534 4 78 2.0 1.5 1.8 1.4 85 chrX 22509449 intergenic not near genes chrX 22509492 intergenic not near genes chrX 22509534 intergenic not near genes chrX_4_22505001 chrX_22505001 RAL-732 1944 chrX 22522626 22522647 chrX 22525446 22525467 NOF 5 2820 2.5 2.0 2.2 1.6 2841 chrX 22522626 intron CG17600 + chrX 22524046 intron CG17600 + chrX 22525467 intron CG17600 + chrX_5_22520001 chrX_22520001 RAL-732 1945 chrX 22602611 22602636 chrX 22602841 22602866 4 230 0.0 1.5 0.8 2.2 255 chrX 22602611 intron Cda4 - chrX 22602738 intron Cda4 - chrX 22602866 intron Cda4 - chrX_4_22600001 chrX_22600001 RAL-732 1946 chrX 22660568 22660584 chrX 22660652 22660666 5 83 5.5 0.0 2.8 1.3 98 chrX 22660568 intron CR44997 + chrX 22660617 intron CR44997 + chrX 22660666 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-732 1947 chrX 22665804 22665828 chrX 22665883 22665907 6 79 1.0 2.0 1.5 2.4 103 chrX 22665804 intron CR44997 + chrX 22665856 intron CR44997 + chrX 22665907 intron CR44997 + chrX_6_22665001 chrX_22665001 RAL-732 1948 chrX 22677295 22677317 chrX 22677504 22677526 7 209 1.5 0.5 1.0 3.5 231 chrX 22677295 intron CR44997 + chrX 22677410 intron CR44997 + chrX 22677526 intron CR44997 + chrX_7_22675001 chrX_22675001 RAL-732 1949 chrX 22697495 22697524 chrX 22701792 22701821 Juan 4 4297 3.0 3.0 3.0 1.0 4326 chrX 22697495 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701821 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-732 1950 chrX 22867977 22868007 chrX 22868091 22868121 5 114 1.5 0.0 0.8 2.8 144 chrX 22867977 exon CG42346 + chrX 22868049 intron CG42346 + chrX 22868121 intron CG42346 + chrX_5_22865001 chrX_22865001 RAL-732 1951 chrX 22996317 22996338 chrX 23003551 23003572 roo 4 7234 2.0 4.5 3.2 1.0 7255 chrX 22996317 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-732 1952 chrY 311344 311346 chrY 311461 311463 4 117 0.5 1.5 1.0 2.0 119 chrY 311344 intergenic not near genes chrY 311404 intergenic not near genes chrY 311463 intergenic not near genes chrY_4_310001 chrY_310001 RAL-732 1953 chrY 975801 975823 chrY 975881 975929 5 90 126.0 145.0 135.5 0.0 128 chrY 975801 intergenic not near genes chrY 975865 intergenic not near genes chrY 975929 intergenic not near genes chrY_5_975001 chrY_975001 RAL-732 1954 chrY 1431370 1431373 chrY 1447406 1447409 Doc 4 16036 2.5 6.0 4.2 0.8 16039 chrY 1431370 intergenic not near genes chrY 1439390 intergenic not near genes chrY 1447409 intergenic not near genes chrY_4_1435001 chrY_1435001 RAL-732