SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47461	47489	chr2L	52566	52594	jockey	24	5102	6.5	11.0	8.8	2.4	5133	chr2L	47461	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52594	intron	Cda5 -	chr2L_24_50001	chr2L_50001	RAL-727
12	chr2L	347884	347918	chr2L	355384	355418	blood	17	7497	6.5	6.5	6.5	2.3	7534	chr2L	347884	3` UTR	Plc21C +	chr2L	351651	intron	Plc21C +	chr2L	355418	3` UTR	Plc21C +	chr2L_17_350001	chr2L_350001	RAL-727
17	chr2L	686924	686942	chr2L	695960	695982	roo	4	9037	3.0	2.5	2.8	1.1	9058	chr2L	686924	intron	ds -	chr2L	691453	intron	ds -	chr2L	695982	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-727
20	chr2L	770463	770491	chr2L	772244	772260	Bari1	8	1772	7.5	3.5	5.5	1.2	1797	chr2L	770463	intergenic	not near genes	chr2L	771362	intergenic	not near genes	chr2L	772260	intergenic	CR44614 +	chr2L_8_770001	chr2L_770001	RAL-727
33	chr2L	1220129	1220161	chr2L	1227594	1227627	blood	21	7465	6.0	4.0	5.0	3.5	7498	chr2L	1220129	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_21_1220001	chr2L_1220001	RAL-727
43	chr2L	1570690	1570718	chr2L	1573562	1573590	F-element	8	2872	3.0	7.0	5.0	1.3	2900	chr2L	1570690	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573590	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-727
48	chr2L	1678976	1679009	chr2L	1686441	1686474	blood	15	7463	3.0	4.5	3.8	3.1	7498	chr2L	1678976	intron	chinmo +	chr2L	1682725	intron	chinmo +	chr2L	1686474	intron	chinmo +	chr2L_15_1680001	chr2L_1680001	RAL-727
50	chr2L	1711358	1711387	chr2L	1711682	1711711	mdg3	10	322	2.5	6.0	4.2	1.9	353	chr2L	1711358	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711534	3` UTR	frtz -	chr2L	1711711	3` UTR	frtz -	chr2L_10_1710001	chr2L_1710001	RAL-727
59	chr2L	2100379	2100396	chr2L	2109530	2109547	roo	9	9149	5.0	7.5	6.2	1.2	9168	chr2L	2100379	intron	dpr3 -	chr2L	2104963	intron	dpr3 -	chr2L	2109547	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-727
60	chr2L	2100398	2100408	chr2L	2109529	2109558	roo	4	9139	4.5	7.0	5.8	0.6	9160	chr2L	2100398	intron	dpr3 -	chr2L	2104978	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-727
61	chr2L	2112124	2112144	chr2L	2119775	2119793	opus	13	7652	2.5	2.0	2.2	4.1	7669	chr2L	2112124	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119793	intergenic	not near genes	chr2L_13_2115001	chr2L_2115001	RAL-727
79	chr2L	2772614	2772628	chr2L	2779194	2779210	297	6	6581	2.5	5.5	4.0	1.2	6596	chr2L	2772614	3` UTR	Syt1 -	chr2L	2775912	intron	Syt1 -	chr2L	2779210	3` UTR	Syt1 -	chr2L_6_2775001	chr2L_2775001	RAL-727
82	chr2L	2933303	2933311	chr2L	2935480	2935485	pogo	5	2177	4.5	5.5	5.0	0.8	2182	chr2L	2933303	intron	lilli +	chr2L	2934394	intron	lilli +	chr2L	2935485	intron	lilli +	chr2L_5_2930001	chr2L_2930001	RAL-727
84	chr2L	3073031	3073064	chr2L	3078234	3078266	copia	15	5203	3.0	6.0	4.5	2.7	5235	chr2L	3073031	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078266	intron	toc -	chr2L_15_3075001	chr2L_3075001	RAL-727
89	chr2L	3251494	3251527	chr2L	3259059	3259092	springer	15	7565	5.5	2.5	4.0	3.0	7598	chr2L	3251494	intergenic	not near genes	chr2L	3255293	intergenic	not near genes	chr2L	3259092	intergenic	not near genes	chr2L_15_3255001	chr2L_3255001	RAL-727
93	chr2L	3388598	3388623	chr2L	3388839	3388858	pogo	5	240	4.5	3.5	4.0	1.0	260	chr2L	3388598	intergenic	CG42460 -	chr2L	3388728	intergenic	CG42460 -	chr2L	3388858	intergenic	CG42460 -,CR44791 +	chr2L_5_3385001	chr2L_3385001	RAL-727
98	chr2L	3649788	3649805	chr2L	3654990	3655005	copia	7	5202	9.5	9.0	9.2	0.7	5217	chr2L	3649788	intron	for -	chr2L	3652396	intron	for -	chr2L	3655005	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-727
104	chr2L	4066056	4066064	chr2L	4068869	4068889	Juan	4	2822	3.0	5.0	4.0	0.8	2833	chr2L	4066056	intron	ed +	chr2L	4067472	intron	ed +	chr2L	4068889	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-727
118	chr2L	4601703	4601735	chr2L	4609144	4609176	mdg1	16	7439	4.5	5.5	5.0	2.7	7473	chr2L	4601703	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609176	intron	dp -	chr2L_16_4605001	chr2L_4605001	RAL-727
119	chr2L	4918169	4918198	chr2L	4923242	4923271	jockey	8	5073	4.5	8.0	6.2	1.1	5102	chr2L	4918169	intron	hoe1 -	chr2L	4920720	intron	hoe1 -	chr2L	4923271	intron	hoe1 -	chr2L_8_4920001	chr2L_4920001	RAL-727
120	chr2L	4953512	4953533	chr2L	4953753	4953774	pogo	11	241	6.5	0.0	3.2	2.6	262	chr2L	4953512	intergenic	Jon25Bii -	chr2L	4953643	intergenic	not near genes	chr2L	4953774	intergenic	not near genes	chr2L_11_4950001	chr2L_4950001	RAL-727
129	chr2L	5342767	5342803	chr2L	5345147	5345182	Doc	13	2380	5.5	4.0	4.8	2.2	2415	chr2L	5342767	intergenic	not near genes	chr2L	5343974	intergenic	not near genes	chr2L	5345182	intergenic	not near genes	chr2L_13_5340001	chr2L_5340001	RAL-727
140	chr2L	5827712	5827740	chr2L	5836720	5836737	roo	15	9005	8.0	8.0	8.0	1.7	9025	chr2L	5827712	intron	TrissinR +	chr2L	5832224	intron	TrissinR +	chr2L	5836737	intron	TrissinR +	chr2L_15_5830001	chr2L_5830001	RAL-727
155	chr2L	6279641	6279648	chr2L	6279720	6279727	INE-1	4	79	7.5	3.5	5.5	0.6	86	chr2L	6279641	intron	Ddr +	chr2L	6279684	intron	Ddr +	chr2L	6279727	intron	Ddr +	chr2L_4_6275001	chr2L_6275001	RAL-727
156	chr2L	6363156	6363163	chr2L	6366071	6366084	Burdock	5	2918	8.5	3.0	5.8	0.7	2928	chr2L	6363156	intergenic	not near genes	chr2L	6364620	intergenic	not near genes	chr2L	6366084	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	RAL-727
159	chr2L	6426854	6426888	chr2L	6445114	6445148	roo	22	18259	6.0	6.0	6.0	3.1	18294	chr2L	6426854	3` UTR	CG9527 -	chr2L	6436001	intron	CG9527 -	chr2L	6445148	exon	CG9527 -	chr2L_22_6435001	chr2L_6435001	RAL-727
163	chr2L	6876775	6876807	chr2L	6882963	6882968	diver	6	6183	4.5	3.5	4.0	1.2	6193	chr2L	6876775	intron	Nlg2 +	chr2L	6879872	intron	Nlg2 +	chr2L	6882968	intron	Nlg2 +	chr2L_6_6875001	chr2L_6875001	RAL-727
175	chr2L	7343342	7343358	chr2L	7350440	7350474	roo	6	7113	3.0	3.5	3.2	1.4	7132	chr2L	7343342	intron	Wnt6 +	chr2L	7346908	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_6_7345001	chr2L_7345001	RAL-727
181	chr2L	7579191	7579203	chr2L	7579382	7579393	BS	6	190	3.0	0.0	1.5	2.4	202	chr2L	7579191	intergenic	RapGAP1 -	chr2L	7579292	intergenic	RapGAP1 -	chr2L	7579393	intergenic	RapGAP1 -	chr2L_6_7575001	chr2L_7575001	RAL-727
185	chr2L	7959040	7959060	chr2L	7960451	7960460	pogo	10	1410	8.5	0.0	4.2	1.9	1420	chr2L	7959040	intron	Snoo -	chr2L	7959750	intron	Snoo -	chr2L	7960460	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	RAL-727
186	chr2L	7965665	7965677	chr2L	7965869	7965879	roo	4	204	1.0	3.5	2.2	1.2	214	chr2L	7965665	intron	Snoo -	chr2L	7965772	intron	Snoo -	chr2L	7965879	intron	Snoo -	chr2L_4_7965001	chr2L_7965001	RAL-727
187	chr2L	7977090	7977112	chr2L	7984066	7984088	297	14	6975	3.5	2.0	2.8	3.7	6998	chr2L	7977090	intron	Snoo -	chr2L	7980589	intron	Snoo -	chr2L	7984088	intron,5` UTR	Snoo -,CG7231 +	chr2L_14_7980001	chr2L_7980001	RAL-727
189	chr2L	8013617	8013640	chr2L	8018820	8018825	copia	12	5202	9.0	0.0	4.5	2.2	5208	chr2L	8013617	intron	Tg +	chr2L	8016221	intron	Tg +	chr2L	8018825	intron	Tg +	chr2L_12_8015001	chr2L_8015001	RAL-727
190	chr2L	8018818	8018830	chr2L	8023595	8023614	Doc	6	4783	0.0	9.0	4.5	1.1	4796	chr2L	8018818	intron	Tg +	chr2L	8021216	intron	Tg +	chr2L	8023614	intron	Tg +	chr2L_6_8020001	chr2L_8020001	RAL-727
199	chr2L	8452420	8452432	chr2L	8461590	8461603	roo	4	9171	10.5	7.5	9.0	0.4	9183	chr2L	8452420	intron	fu12 -	chr2L	8457012	intron	fu12 -	chr2L	8461603	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-727
200	chr2L	8452433	8452452	chr2L	8461589	8461623	roo	12	9168	5.5	6.5	6.0	1.7	9190	chr2L	8452433	intron	fu12 -	chr2L	8457028	intron	fu12 -	chr2L	8461623	intron	fu12 -	chr2L_12_8455001	chr2L_8455001	RAL-727
203	chr2L	8594463	8594497	chr2L	8601517	8601550	297	9	7052	5.5	3.5	4.5	1.6	7087	chr2L	8594463	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598006	intron	Sema-1a +	chr2L	8601550	intron	Sema-1a +	chr2L_9_8595001	chr2L_8595001	RAL-727
206	chr2L	8723115	8723148	chr2L	8731492	8731525	Tirant	18	8377	2.5	3.0	2.8	4.7	8410	chr2L	8723115	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731525	intron	raw -	chr2L_18_8725001	chr2L_8725001	RAL-727
211	chr2L	9000277	9000283	chr2L	9007787	9007792	roo	5	7510	14.5	0.0	7.2	0.6	7515	chr2L	9000277	intergenic	Try29F +	chr2L	9004034	intergenic	not near genes	chr2L	9007792	intergenic	not near genes	chr2L_5_9000001	chr2L_9000001	RAL-727
213	chr2L	9217968	9218004	chr2L	9222755	9222789	Doc	20	4785	4.5	6.5	5.5	3.1	4821	chr2L	9217968	intron	tai +	chr2L	9220378	intron	tai +	chr2L	9222789	intron	tai +	chr2L_20_9220001	chr2L_9220001	RAL-727
221	chr2L	9393496	9393531	chr2L	9396463	9396498	jockey	28	2966	5.5	11.5	8.5	2.9	3002	chr2L	9393496	intron	Shawl -	chr2L	9394997	intron	Shawl -	chr2L	9396498	intron	Shawl -	chr2L_28_9390001	chr2L_9390001	RAL-727
236	chr2L	9973740	9973750	chr2L	9980849	9980869	HMS-Beagle	6	7116	7.0	7.5	7.2	0.7	7129	chr2L	9973740	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980869	intergenic	not near genes	chr2L_6_9975001	chr2L_9975001	RAL-727
242	chr2L	10138189	10138194	chr2L	10143435	10143439	Rt1c	4	5246	3.5	13.5	8.5	0.4	5250	chr2L	10138189	intron	CG44153 -	chr2L	10140814	intron	CG44153 -	chr2L	10143439	intron	CG44153 -	chr2L_4_10140001	chr2L_10140001	RAL-727
243	chr2L	10156331	10156355	chr2L	10163791	10163808	blood	8	7464	8.0	3.5	5.8	1.2	7477	chr2L	10156331	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163808	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-727
250	chr2L	10592858	10592871	chr2L	10600515	10600531	opus	7	7661	2.5	9.5	6.0	1.0	7673	chr2L	10592858	intron	Trim9 +	chr2L	10596694	intron	Trim9 +	chr2L	10600531	intron	Trim9 +	chr2L_7_10595001	chr2L_10595001	RAL-727
262	chr2L	10862856	10862882	chr2L	10864452	10864491	Rt1c	9	1608	2.5	3.5	3.0	2.2	1635	chr2L	10862856	3` UTR	CR43807 -	chr2L	10863674	intron	CR43807 -	chr2L	10864491	3` UTR	CR43807 -	chr2L_9_10860001	chr2L_10860001	RAL-727
267	chr2L	10946949	10946974	chr2L	10956164	10956189	roo	9	9212	4.0	3.5	3.8	1.9	9240	chr2L	10946949	intron	dpr2 -	chr2L	10951569	intron	dpr2 -	chr2L	10956189	intron	dpr2 -	chr2L_9_10950001	chr2L_10950001	RAL-727
281	chr2L	11540581	11540613	chr2L	11547983	11548015	Tabor	12	7402	3.5	5.0	4.2	2.3	7434	chr2L	11540581	intergenic	not near genes	chr2L	11544298	intergenic	not near genes	chr2L	11548015	intergenic	not near genes	chr2L_12_11540001	chr2L_11540001	RAL-727
282	chr2L	11563635	11563667	chr2L	11568839	11568871	copia	20	5203	3.0	5.5	4.2	3.8	5236	chr2L	11563635	intergenic	not near genes	chr2L	11566253	intergenic	not near genes	chr2L	11568871	intergenic	not near genes	chr2L_20_11565001	chr2L_11565001	RAL-727
287	chr2L	11713511	11713538	chr2L	11720979	11721001	blood	12	7467	4.5	8.5	6.5	1.6	7490	chr2L	11713511	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721001	intergenic	CR44143 +	chr2L_12_11715001	chr2L_11715001	RAL-727
295	chr2L	12067328	12067361	chr2L	12074380	12074413	297	16	7051	6.5	3.5	5.0	2.7	7085	chr2L	12067328	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074413	intergenic	not near genes	chr2L_16_12070001	chr2L_12070001	RAL-727
311	chr2L	12558323	12558339	chr2L	12565452	12565462	HMS-Beagle	6	7128	6.5	3.0	4.8	1.0	7139	chr2L	12558323	intergenic	not near genes	chr2L	12561892	intergenic	not near genes	chr2L	12565462	intergenic	not near genes	chr2L_6_12560001	chr2L_12560001	RAL-727
312	chr2L	12558343	12558349	chr2L	12565447	12565465	HMS-Beagle	8	7122	5.5	1.5	3.5	1.8	7122	chr2L	12558343	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565465	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	RAL-727
313	chr2L	12728917	12728947	chr2L	12729161	12729191	pogo	20	244	4.0	6.0	5.0	3.3	274	chr2L	12728917	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729191	exon	MRP +	chr2L_20_12725001	chr2L_12725001	RAL-727
314	chr2L	12731062	12731082	chr2L	12735828	12735829	F-element	4	4762	5.5	3.5	4.5	0.7	4767	chr2L	12731062	intron	MRP +	chr2L	12733446	intron	MRP +	chr2L	12735829	intron	MRP +	chr2L_4_12730001	chr2L_12730001	RAL-727
315	chr2L	12739175	12739205	chr2L	12743954	12743986	Doc	11	4781	2.0	2.5	2.2	3.4	4811	chr2L	12739175	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743986	exon	MRP +	chr2L_11_12740001	chr2L_12740001	RAL-727
318	chr2L	12763866	12763872	chr2L	12764066	12764072	BS	5	200	0.0	6.0	3.0	1.2	206	chr2L	12763866	intergenic	not near genes	chr2L	12763969	intergenic	not near genes	chr2L	12764072	intergenic	not near genes	chr2L_5_12760001	chr2L_12760001	RAL-727
320	chr2L	12781798	12781813	chr2L	12789247	12789253	Quasimodo	6	7448	6.0	7.0	6.5	0.8	7455	chr2L	12781798	intergenic	not near genes	chr2L	12785526	intergenic	not near genes	chr2L	12789253	intergenic	not near genes	chr2L_6_12785001	chr2L_12785001	RAL-727
321	chr2L	12791605	12791633	chr2L	12795280	12795308	F-element	10	3673	6.0	7.0	6.5	1.3	3703	chr2L	12791605	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795308	intergenic	not near genes	chr2L_10_12790001	chr2L_12790001	RAL-727
323	chr2L	12861694	12861729	chr2L	12863161	12863196	hobo	10	1466	2.0	3.0	2.5	2.9	1502	chr2L	12861694	intergenic	not near genes	chr2L	12862445	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-727
324	chr2L	12933851	12933883	chr2L	12941318	12941336	blood	11	7466	4.0	5.0	4.5	2.0	7485	chr2L	12933851	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941336	intergenic	not near genes	chr2L_11_12935001	chr2L_12935001	RAL-727
326	chr2L	13036243	13036275	chr2L	13036485	13036517	X-element	14	241	2.5	10.0	6.2	1.9	274	chr2L	13036243	intron	CG9932 -	chr2L	13036380	intron	CG9932 -	chr2L	13036517	intron	CG9932 -	chr2L_14_13035001	chr2L_13035001	RAL-727
334	chr2L	13405647	13405668	chr2L	13410444	13410465	Doc	15	4795	8.5	4.0	6.2	2.1	4818	chr2L	13405647	exon	CG7110 +	chr2L	13408056	intron	CG7110 +	chr2L	13410465	intron	CG7110 +	chr2L_15_13405001	chr2L_13405001	RAL-727
335	chr2L	13405669	13405677	chr2L	13410443	13410474	Doc	5	4789	8.0	4.0	6.0	0.7	4805	chr2L	13405669	exon	CG7110 +	chr2L	13408072	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_5_13405001	chr2L_13405001	RAL-727
336	chr2L	13481449	13481476	chr2L	13482056	13482083	jockey	14	607	6.0	8.0	7.0	1.8	634	chr2L	13481449	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482083	intron	CG42784 +	chr2L_14_13480001	chr2L_13480001	RAL-727
341	chr2L	13761804	13761817	chr2L	13762915	13762928	Doc	4	1111	17.5	6.5	12.0	0.3	1124	chr2L	13761804	intron	TM9SF4 +	chr2L	13762366	intron	TM9SF4 +	chr2L	13762928	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-727
342	chr2L	13761819	13761833	chr2L	13762913	13762943	Doc	7	1108	12.0	5.5	8.8	0.7	1124	chr2L	13761819	intron	TM9SF4 +	chr2L	13762381	intron	TM9SF4 +	chr2L	13762943	intron	TM9SF4 +	chr2L_7_13760001	chr2L_13760001	RAL-727
344	chr2L	13853084	13853116	chr2L	13862234	13862266	roo	19	9148	7.5	7.0	7.2	2.3	9182	chr2L	13853084	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	RAL-727
363	chr2L	14642569	14642597	chr2L	14651731	14651760	roo	10	9161	2.5	3.5	3.0	2.5	9191	chr2L	14642569	intron	osp -	chr2L	14647164	intron	osp -	chr2L	14651760	intron	osp -	chr2L_10_14645001	chr2L_14645001	RAL-727
368	chr2L	14803878	14803888	chr2L	14809081	14809091	copia	9	5202	13.0	11.5	12.2	0.7	5213	chr2L	14803878	intergenic	not near genes	chr2L	14806484	intergenic	not near genes	chr2L	14809091	intergenic	not near genes	chr2L_9_14805001	chr2L_14805001	RAL-727
369	chr2L	14803889	14803911	chr2L	14809080	14809114	copia	7	5198	9.0	11.0	10.0	0.6	5225	chr2L	14803889	intergenic	not near genes	chr2L	14806502	intergenic	not near genes	chr2L	14809114	intergenic	not near genes	chr2L_7_14805001	chr2L_14805001	RAL-727
375	chr2L	14984382	14984398	chr2L	14991984	14992000	opus	7	7602	10.0	9.0	9.5	0.7	7618	chr2L	14984382	intron	mol -	chr2L	14988191	intron	mol -	chr2L	14992000	intron	mol -	chr2L_7_14985001	chr2L_14985001	RAL-727
392	chr2L	15446052	15446074	chr2L	15453521	15453543	blood	9	7469	7.0	4.0	5.5	1.4	7491	chr2L	15446052	intergenic	not near genes	chr2L	15449798	intergenic	not near genes	chr2L	15453543	intergenic	not near genes	chr2L_9_15445001	chr2L_15445001	RAL-727
395	chr2L	15586409	15586435	chr2L	15593461	15593487	297	12	7052	8.0	4.0	6.0	1.7	7078	chr2L	15586409	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593487	intergenic	not near genes	chr2L_12_15585001	chr2L_15585001	RAL-727
400	chr2L	15956023	15956059	chr2L	15957490	15957519	hobo	21	1465	7.5	3.5	5.5	3.2	1496	chr2L	15956023	intron	beat-Ib -	chr2L	15956771	intron	beat-Ib -	chr2L	15957519	intron	beat-Ib -	chr2L_21_15955001	chr2L_15955001	RAL-727
402	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	15.0	32.0	23.5	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-727
404	chr2L	16141148	16141191	chr2L	16146369	16146398	copia	10	5207	0.0	3.0	1.5	4.0	5250	chr2L	16141148	intergenic	not near genes	chr2L	16143773	intergenic	not near genes	chr2L	16146398	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-727
405	chr2L	16153743	16153749	chr2L	16160811	16160817	297	7	7068	5.0	8.0	6.5	0.9	7074	chr2L	16153743	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160817	intergenic	not near genes	chr2L_7_16155001	chr2L_16155001	RAL-727
409	chr2L	16280256	16280286	chr2L	16281427	16281452	1360	12	1169	4.0	5.5	4.8	2.1	1196	chr2L	16280256	intron	crp -	chr2L	16280854	intron	crp -	chr2L	16281452	intron	crp -	chr2L_12_16280001	chr2L_16280001	RAL-727
410	chr2L	16511989	16511995	chr2L	16519116	16519122	HMS-Beagle	5	7127	3.0	5.0	4.0	1.0	7133	chr2L	16511989	intron	CG5953 -	chr2L	16515556	intron	CG5953 -	chr2L	16519122	intron	CG5953 -	chr2L_5_16515001	chr2L_16515001	RAL-727
423	chr2L	16958102	16958136	chr2L	16962890	16962924	Doc	10	4788	3.0	8.0	5.5	1.5	4822	chr2L	16958102	intergenic	not near genes	chr2L	16960513	intergenic	not near genes	chr2L	16962924	intergenic	not near genes	chr2L_10_16960001	chr2L_16960001	RAL-727
431	chr2L	17167564	17167593	chr2L	17167805	17167810	pogo	10	237	3.5	3.5	3.5	2.2	246	chr2L	17167564	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167687	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167810	intron,intron	CG34106 +,beat-IIIa +	chr2L_10_17165001	chr2L_17165001	RAL-727
433	chr2L	17199161	17199192	chr2L	17200628	17200659	hobo	7	1467	4.0	4.5	4.2	1.3	1498	chr2L	17199161	intron	beat-IIIc -	chr2L	17199910	intron	beat-IIIc -	chr2L	17200659	intron	beat-IIIc -	chr2L_7_17195001	chr2L_17195001	RAL-727
436	chr2L	17273192	17273219	chr2L	17277974	17277995	F-element	10	4779	6.0	8.0	7.0	1.2	4803	chr2L	17273192	intergenic	not near genes	chr2L	17275594	intergenic	not near genes	chr2L	17277995	intergenic	not near genes	chr2L_10_17275001	chr2L_17275001	RAL-727
437	chr2L	17273220	17273228	chr2L	17277972	17277991	F-element	5	4771	4.0	7.5	5.8	0.7	4771	chr2L	17273220	intergenic	not near genes	chr2L	17275606	intergenic	not near genes	chr2L	17277991	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-727
442	chr2L	17432013	17432048	chr2L	17432120	17432142	1360	11	105	0.0	4.0	2.0	3.7	129	chr2L	17432013	intron	Dif -	chr2L	17432078	intron	Dif -	chr2L	17432142	intron	Dif -	chr2L_11_17430001	chr2L_17430001	RAL-727
450	chr2L	17727869	17727880	chr2L	17729335	17729344	hobo	5	1466	4.5	8.5	6.5	0.7	1475	chr2L	17727869	intron	CadN -	chr2L	17728606	intron	CadN -	chr2L	17729344	intron	CadN -	chr2L_5_17725001	chr2L_17725001	RAL-727
452	chr2L	17819920	17819953	chr2L	17825123	17825156	copia	13	5203	4.5	5.5	5.0	2.2	5236	chr2L	17819920	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825156	intron	CadN2 -	chr2L_13_17820001	chr2L_17820001	RAL-727
456	chr2L	17911968	17911983	chr2L	17914146	17914161	pogo	5	2177	8.0	4.5	6.2	0.7	2193	chr2L	17911968	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914161	intergenic	CG43271 -	chr2L_5_17910001	chr2L_17910001	RAL-727
458	chr2L	17951957	17951977	chr2L	17953424	17953444	hobo	8	1467	2.5	5.5	4.0	1.6	1487	chr2L	17951957	intergenic	CR44398 -,CR44397 -	chr2L	17952700	intergenic	not near genes	chr2L	17953444	intergenic	not near genes	chr2L_8_17950001	chr2L_17950001	RAL-727
462	chr2L	18051875	18051909	chr2L	18061022	18061056	roo	12	9145	6.5	4.0	5.2	1.9	9181	chr2L	18051875	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061056	intron	rdo +	chr2L_12_18055001	chr2L_18055001	RAL-727
470	chr2L	18408023	18408055	chr2L	18412807	18412839	Doc	13	4783	8.0	0.0	4.0	2.6	4816	chr2L	18408023	intergenic	not near genes	chr2L	18410431	intergenic	not near genes	chr2L	18412839	intergenic	not near genes	chr2L_13_18410001	chr2L_18410001	RAL-727
485	chr2L	19147376	19147402	chr2L	19154406	19154437	297	16	7033	7.5	6.0	6.8	2.1	7061	chr2L	19147376	intron	brat +	chr2L	19150906	intron	brat +	chr2L	19154437	intron	brat +	chr2L_16_19150001	chr2L_19150001	RAL-727
491	chr2L	19345012	19345044	chr2L	19357221	19357253	blood	11	12206	3.5	3.0	3.2	2.6	12241	chr2L	19345012	intron	dnt -	chr2L	19351132	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_11_19350001	chr2L_19350001	RAL-727
507	chr2L	19620095	19620131	chr2L	19621083	19621117	jockey	9	987	3.5	2.0	2.8	2.4	1022	chr2L	19620095	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621117	intron	Lar +	chr2L_9_19620001	chr2L_19620001	RAL-727
508	chr2L	19652572	19652600	chr2L	19674006	19674034	opus	14	21434	8.0	6.0	7.0	1.8	21462	chr2L	19652572	intron	Lar +	chr2L	19663303	intron	Lar +	chr2L	19674034	intron	Lar +	chr2L_14_19660001	chr2L_19660001	RAL-727
509	chr2L	19703535	19703569	chr2L	19712671	19712705	roo	16	9135	6.0	5.5	5.8	2.4	9170	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_16_19705001	chr2L_19705001	RAL-727
512	chr2L	19762813	19762840	chr2L	19763053	19763082	pogo	12	241	4.0	4.5	4.2	2.3	269	chr2L	19762813	5` UTR	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763082	intron	fbp -	chr2L_12_19760001	chr2L_19760001	RAL-727
522	chr2L	20005870	20005904	chr2L	20010946	20010980	flea	12	5076	3.5	4.0	3.8	2.5	5110	chr2L	20005870	intron	CG43861 -	chr2L	20008425	intron	CG43861 -	chr2L	20010980	intron	CG43861 -	chr2L_12_20005001	chr2L_20005001	RAL-727
526	chr2L	20272112	20272142	chr2L	20282823	20282853	copia	15	10710	9.0	6.5	7.8	1.7	10741	chr2L	20272112	intergenic	not near genes	chr2L	20277482	intergenic	not near genes	chr2L	20282853	intergenic	not near genes	chr2L_15_20275001	chr2L_20275001	RAL-727
528	chr2L	20303159	20303189	chr2L	20310627	20310657	blood	14	7468	0.0	4.0	2.0	4.7	7498	chr2L	20303159	intergenic	not near genes	chr2L	20306908	intergenic	not near genes	chr2L	20310657	intergenic	not near genes	chr2L_14_20305001	chr2L_20305001	RAL-727
531	chr2L	20372219	20372255	chr2L	20372469	20372496	pogo	4	246	0.5	4.0	2.2	1.2	277	chr2L	20372219	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372496	exon	Ugt37a1 -	chr2L_4_20370001	chr2L_20370001	RAL-727
536	chr2L	20568670	20568684	chr2L	20569060	20569074	X-element	7	390	3.5	4.5	4.0	1.4	404	chr2L	20568670	intron	CR45347 +	chr2L	20568872	intron	CR45347 +	chr2L	20569074	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RAL-727
537	chr2L	20576217	20576252	chr2L	20583685	20583719	blood	11	7466	7.5	5.0	6.2	1.5	7502	chr2L	20576217	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RAL-727
541	chr2L	20740279	20740281	chr2L	20748149	20748154	Tirant	4	7873	12.5	14.0	13.2	0.3	7875	chr2L	20740279	3` UTR	Fs(2)Ket +	chr2L	20744216	intron	Fs(2)Ket +	chr2L	20748154	3` UTR	Fs(2)Ket +	chr2L_4_20740001	chr2L_20740001	RAL-727
543	chr2L	20835806	20835840	chr2L	20836523	20836557	Quasimodo	12	717	5.0	2.5	3.8	2.5	751	chr2L	20835806	5` UTR	Oseg5 -	chr2L	20836182	intergenic	Oseg5 -,Spn38F -	chr2L	20836557	intergenic	Spn38F -	chr2L_12_20835001	chr2L_20835001	RAL-727
545	chr2L	20891535	20891544	chr2L	20896636	20896645	jockey	4	5101	3.5	6.5	5.0	0.7	5110	chr2L	20891535	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896645	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	RAL-727
546	chr2L	20901473	20901491	chr2L	20902630	20902655	1360	5	1162	1.5	2.5	2.0	1.7	1182	chr2L	20901473	intron,intron	CG43739 -,sky -	chr2L	20902064	intron,intron	CG43739 -,sky -	chr2L	20902655	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-727
548	chr2L	20976639	20976679	chr2L	20981454	20981494	X-element	18	4814	4.0	4.5	4.2	3.5	4855	chr2L	20976639	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981494	intron	CG42238 -	chr2L_18_20975001	chr2L_20975001	RAL-727
550	chr2L	21020271	21020309	chr2L	21023948	21023962	NOF	18	3673	1.5	3.0	2.2	5.6	3691	chr2L	21020271	intron	CG42238 -	chr2L	21022116	intron	CG42238 -	chr2L	21023962	intron	CG42238 -	chr2L_18_21020001	chr2L_21020001	RAL-727
551	chr2L	21041134	21041166	chr2L	21049394	21049427	Tirant	14	8258	7.5	5.5	6.5	1.9	8293	chr2L	21041134	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_14_21045001	chr2L_21045001	RAL-727
559	chr2L	21347549	21347583	chr2L	21355021	21355055	blood	14	7471	5.0	3.0	4.0	2.8	7506	chr2L	21347549	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355055	intron	Tsp39D +	chr2L_14_21350001	chr2L_21350001	RAL-727
562	chr2L	21597027	21597063	chr2L	21604771	21604807	roo	20	7743	3.0	6.0	4.5	3.6	7780	chr2L	21597027	intergenic	not near genes	chr2L	21600917	intergenic	not near genes	chr2L	21604807	intergenic	not near genes	chr2L_20_21600001	chr2L_21600001	RAL-727
565	chr2L	21691832	21691859	chr2L	21698297	21698329	Burdock	6	6469	4.5	1.0	2.8	1.6	6497	chr2L	21691832	intron	CG31619 +	chr2L	21695080	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-727
574	chr2L	21981681	21981713	chr2L	21990846	21990869	roo	16	9162	4.0	7.5	5.8	2.4	9188	chr2L	21981681	exon	CG2528 -	chr2L	21986275	intron	CG2528 -	chr2L	21990869	exon	CG2528 -	chr2L_16_21985001	chr2L_21985001	RAL-727
579	chr2L	22490511	22490529	chr2L	22497636	22497643	springer	4	7127	0.0	0.0	0.0	4.0	7132	chr2L	22490511	intergenic	not near genes	chr2L	22494077	intergenic	not near genes	chr2L	22497643	intergenic	not near genes	chr2L_4_22490001	chr2L_22490001	RAL-727
582	chr2L	22548923	22548942	chr2L	22550143	22550167	1360	12	1224	1.0	9.5	5.2	1.9	1244	chr2L	22548923	intergenic	CG17490 +	chr2L	22549545	intergenic	not near genes	chr2L	22550167	intergenic	CG17493 +	chr2L_12_22545001	chr2L_22545001	RAL-727
585	chr2L	22679803	22679822	chr2L	22684567	22684594	F-element	15	4768	9.5	7.5	8.5	1.6	4791	chr2L	22679803	intron	CG40006 -	chr2L	22682198	intron	CG40006 -	chr2L	22684594	intron	CG40006 -	chr2L_15_22680001	chr2L_22680001	RAL-727
586	chr2L	22679825	22679830	chr2L	22684565	22684598	F-element	6	4766	7.5	7.0	7.2	0.7	4773	chr2L	22679825	intron	CG40006 -	chr2L	22682212	intron	CG40006 -	chr2L	22684598	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-727
590	chr2L	22776421	22776448	chr2L	22778210	22778237	S-element	16	1789	3.0	4.0	3.5	3.6	1816	chr2L	22776421	intergenic	not near genes	chr2L	22777329	intergenic	not near genes	chr2L	22778237	intergenic	not near genes	chr2L_16_22775001	chr2L_22775001	RAL-727
593	chr2R	529324	529357	chr2R	537946	537982	Max-element	12	8621	5.0	4.5	4.8	2.1	8658	chr2R	529324	intron	CG40378 +	chr2R	533653	intron	CG40378 +	chr2R	537982	intron	CG40378 +	chr2R_12_530001	chr2R_530001	RAL-727
594	chr2R	1082368	1082385	chr2R	1087129	1087161	Doc	14	4770	10.5	6.5	8.5	1.5	4793	chr2R	1082368	intron	rl +	chr2R	1084764	intron	rl +	chr2R	1087161	intron	rl +	chr2R_14_1080001	chr2R_1080001	RAL-727
595	chr2R	1320201	1320201	chr2R	11463556	11463556	invader1	4	10143355	26.5	19.0	22.8	0.2	10143355	chr2R	1320201	intergenic	not near genes	chr2R	6391878	intergenic	not near genes	chr2R	11463556	3` UTR	E(Pc) +	chr2R_4_6390001	chr2R_6390001	RAL-727
599	chr2R	2498991	2499018	chr2R	2508132	2508165	roo	12	9144	2.5	7.0	4.8	2.1	9174	chr2R	2498991	intron	MFS17 -	chr2R	2503578	intron	MFS17 -	chr2R	2508165	intron	MFS17 -	chr2R_12_2500001	chr2R_2500001	RAL-727
601	chr2R	2591545	2591550	chr2R	2594221	2594226	roo	4	2676	50.0	22.0	36.0	0.1	2681	chr2R	2591545	intergenic	not near genes	chr2R	2592886	intergenic	not near genes	chr2R	2594226	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	RAL-727
602	chr2R	2591554	2591567	chr2R	2594214	2594235	roo	4	2670	51.0	21.0	36.0	0.1	2681	chr2R	2591554	intergenic	not near genes	chr2R	2592894	intergenic	not near genes	chr2R	2594235	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	RAL-727
603	chr2R	3144097	3144108	chr2R	3393369	3393386	Doc	6	249277	21.0	8.5	14.8	0.4	249289	chr2R	3144097	intron	CG42596 +	chr2R	3268742	intergenic	not near genes	chr2R	3393386	intergenic	not near genes	chr2R_6_3265001	chr2R_3265001	RAL-727
606	chr2R	3532615	3532643	chr2R	3536054	3536060	Doc	6	3438	3.0	1.5	2.2	1.9	3445	chr2R	3532615	intergenic	not near genes	chr2R	3534338	intergenic	not near genes	chr2R	3536060	intergenic	not near genes	chr2R_6_3530001	chr2R_3530001	RAL-727
614	chr2R	4750339	4750375	chr2R	4751496	4751539	1360	14	1154	3.0	4.5	3.8	2.9	1200	chr2R	4750339	intron	conu +	chr2R	4750939	intron	conu +	chr2R	4751539	intron	conu +	chr2R_14_4750001	chr2R_4750001	RAL-727
623	chr2R	5141633	5141638	chr2R	5143494	5143499	1360	4	1861	9.5	9.5	9.5	0.4	1866	chr2R	5141633	intergenic	not near genes	chr2R	5142566	intergenic	not near genes	chr2R	5143499	intergenic	not near genes	chr2R_4_5140001	chr2R_5140001	RAL-727
630	chr2R	5417995	5418003	chr2R	5420627	5420634	Burdock	4	2632	7.0	2.0	4.5	0.7	2639	chr2R	5417995	intron	laccase2 +	chr2R	5419314	intron	laccase2 +	chr2R	5420634	intron	laccase2 +	chr2R_4_5415001	chr2R_5415001	RAL-727
631	chr2R	5418005	5418027	chr2R	5420626	5420659	Burdock	10	2631	2.0	2.0	2.0	3.3	2654	chr2R	5418005	intron	laccase2 +	chr2R	5419332	intron	laccase2 +	chr2R	5420659	intron	laccase2 +	chr2R_10_5415001	chr2R_5415001	RAL-727
634	chr2R	5543206	5543222	chr2R	5547290	5547306	invader1	11	4083	0.0	8.5	4.2	2.1	4100	chr2R	5543206	intron	CG30438 +	chr2R	5545256	intron	CG30438 +	chr2R	5547306	intron	CG30438 +	chr2R_11_5545001	chr2R_5545001	RAL-727
641	chr2R	5869283	5869308	chr2R	5874359	5874384	flea	15	5075	4.0	7.5	5.8	2.2	5101	chr2R	5869283	intergenic	not near genes	chr2R	5871834	intergenic	not near genes	chr2R	5874384	intergenic	not near genes	chr2R_15_5870001	chr2R_5870001	RAL-727
645	chr2R	5902160	5902173	chr2R	5909719	5909732	17.6	7	7559	5.5	2.0	3.8	1.5	7572	chr2R	5902160	intron	CG43366 +	chr2R	5905946	intron	CG43366 +	chr2R	5909732	intron	CG43366 +	chr2R_7_5905001	chr2R_5905001	RAL-727
646	chr2R	5902176	5902192	chr2R	5909713	5909746	17.6	5	7554	2.0	2.0	2.0	1.7	7570	chr2R	5902176	intron	CG43366 +	chr2R	5905961	intron	CG43366 +	chr2R	5909746	intron	CG43366 +	chr2R_5_5905001	chr2R_5905001	RAL-727
648	chr2R	6096711	6096748	chr2R	6101909	6101917	BS	7	5187	11.0	4.5	7.8	0.8	5206	chr2R	6096711	intron	EcR -	chr2R	6099314	intron	EcR -	chr2R	6101917	intron	EcR -	chr2R_7_6095001	chr2R_6095001	RAL-727
653	chr2R	6494529	6494537	chr2R	6499291	6499299	F-element	6	4762	5.5	5.0	5.2	1.0	4770	chr2R	6494529	intergenic	not near genes	chr2R	6496914	intergenic	not near genes	chr2R	6499299	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-727
654	chr2R	6494546	6494554	chr2R	6499289	6499310	F-element	4	4756	2.0	5.0	3.5	0.9	4764	chr2R	6494546	intergenic	not near genes	chr2R	6496928	intergenic	not near genes	chr2R	6499310	intergenic	not near genes	chr2R_4_6495001	chr2R_6495001	RAL-727
656	chr2R	6579775	6579801	chr2R	6584861	6584887	flea	8	5085	3.0	3.5	3.2	1.9	5112	chr2R	6579775	intron	jing +	chr2R	6582331	intron	jing +	chr2R	6584887	intron	jing +	chr2R_8_6580001	chr2R_6580001	RAL-727
664	chr2R	6952164	6952183	chr2R	6959744	6959763	opus	8	7579	4.0	6.0	5.0	1.3	7599	chr2R	6952164	intron,intron	mim -,CheB42c -	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959763	intron,intron	mim -,CheB42c -	chr2R_8_6955001	chr2R_6955001	RAL-727
669	chr2R	7196565	7196595	chr2R	7201340	7201370	F-element	15	4775	8.0	4.0	6.0	2.1	4805	chr2R	7196565	intron	pk +	chr2R	7198968	intron	pk +	chr2R	7201370	intron	pk +	chr2R_15_7195001	chr2R_7195001	RAL-727
670	chr2R	7235832	7235851	chr2R	7240910	7240943	jockey	8	5085	8.5	3.0	5.8	1.2	5111	chr2R	7235832	intergenic	not near genes	chr2R	7238388	intergenic	not near genes	chr2R	7240943	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-727
678	chr2R	7434898	7434922	chr2R	7439199	7439221	Juan	9	4300	4.0	9.0	6.5	1.2	4323	chr2R	7434898	intergenic	so +	chr2R	7437060	intergenic	not near genes	chr2R	7439221	intergenic	not near genes	chr2R_9_7435001	chr2R_7435001	RAL-727
679	chr2R	7608406	7608436	chr2R	7613609	7613635	I-element	8	5201	6.0	5.0	5.5	1.2	5229	chr2R	7608406	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613635	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-727
681	chr2R	7815670	7815702	chr2R	7822139	7822171	Burdock	18	6466	9.5	4.5	7.0	2.2	6501	chr2R	7815670	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822171	3` UTR	cathD -	chr2R_18_7815001	chr2R_7815001	RAL-727
683	chr2R	7869189	7869221	chr2R	7873975	7874002	Doc	15	4785	6.0	5.0	5.5	2.3	4813	chr2R	7869189	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_15_7870001	chr2R_7870001	RAL-727
695	chr2R	8330863	8330890	chr2R	8331349	8331376	roo	13	485	6.0	8.0	7.0	1.6	513	chr2R	8330863	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331376	intron	pdm3 +	chr2R_13_8330001	chr2R_8330001	RAL-727
704	chr2R	8722764	8722776	chr2R	8723005	8723017	pogo	7	240	11.0	4.0	7.5	0.8	253	chr2R	8722764	intron	CG14767 -	chr2R	8722890	intron	CG14767 -	chr2R	8723017	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	RAL-727
705	chr2R	8722777	8722795	chr2R	8723003	8723036	pogo	6	234	6.5	4.0	5.2	1.0	259	chr2R	8722777	intron	CG14767 -	chr2R	8722906	intron	CG14767 -	chr2R	8723036	intron	CG14767 -	chr2R_6_8720001	chr2R_8720001	RAL-727
708	chr2R	8777926	8777946	chr2R	8784130	8784150	diver	11	6203	2.5	4.5	3.5	2.4	6224	chr2R	8777926	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784150	intergenic	not near genes	chr2R_11_8780001	chr2R_8780001	RAL-727
714	chr2R	9151303	9151335	chr2R	9157773	9157805	Burdock	18	6469	4.5	4.5	4.5	3.3	6502	chr2R	9151303	exon	CG30345 +	chr2R	9154554	intergenic	not near genes	chr2R	9157805	intergenic	CG8008 -	chr2R_18_9150001	chr2R_9150001	RAL-727
716	chr2R	9212696	9212721	chr2R	9213182	9213207	roo	7	486	3.0	7.0	5.0	1.2	511	chr2R	9212696	intergenic	CR45309 +	chr2R	9212952	intergenic	CR45309 +	chr2R	9213207	5` UTR	CR45309 +	chr2R_7_9210001	chr2R_9210001	RAL-727
723	chr2R	9480076	9480106	chr2R	9490607	9490634	roo	13	10529	2.0	5.5	3.8	2.7	10558	chr2R	9480076	intergenic	not near genes	chr2R	9485355	intergenic	not near genes	chr2R	9490634	intergenic	not near genes	chr2R_13_9485001	chr2R_9485001	RAL-727
725	chr2R	9726612	9726646	chr2R	9734163	9734197	17.6	8	7551	3.0	5.5	4.2	1.5	7585	chr2R	9726612	intron	sqa -	chr2R	9730404	intron	sqa -	chr2R	9734197	intron	sqa -	chr2R_8_9730001	chr2R_9730001	RAL-727
727	chr2R	9871051	9871070	chr2R	9871537	9871541	roo	8	483	6.5	11.5	9.0	0.8	490	chr2R	9871051	intron	cbx -	chr2R	9871296	intron	cbx -	chr2R	9871541	intron,5` UTR	cbx -,CG18446 +	chr2R_8_9870001	chr2R_9870001	RAL-727
731	chr2R	9945449	9945451	chr2R	9945629	9945643	BS	4	188	10.5	3.0	6.8	0.5	194	chr2R	9945449	intron	Mef2 -	chr2R	9945546	intron	Mef2 -	chr2R	9945643	intron	Mef2 -	chr2R_4_9945001	chr2R_9945001	RAL-727
732	chr2R	9945454	9945470	chr2R	9945627	9945652	BS	7	183	8.0	3.0	5.5	1.1	198	chr2R	9945454	intron	Mef2 -	chr2R	9945553	intron	Mef2 -	chr2R	9945652	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-727
734	chr2R	10005854	10005864	chr2R	10007018	10007029	1360	5	1165	5.5	2.5	4.0	1.0	1175	chr2R	10005854	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007029	intron	Pka-R2 -	chr2R_5_10005001	chr2R_10005001	RAL-727
735	chr2R	10005868	10005879	chr2R	10007016	10007034	1360	5	1154	2.0	2.5	2.2	1.6	1166	chr2R	10005868	intron	Pka-R2 -	chr2R	10006451	intron	Pka-R2 -	chr2R	10007034	intron	Pka-R2 -	chr2R_5_10005001	chr2R_10005001	RAL-727
742	chr2R	10176877	10176913	chr2R	10186044	10186080	roo	14	9167	4.0	4.0	4.0	2.8	9203	chr2R	10176877	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186080	intron	KCNQ -	chr2R_14_10180001	chr2R_10180001	RAL-727
759	chr2R	10585573	10585589	chr2R	10594146	10594162	Tirant	18	8577	4.0	6.5	5.2	2.9	8589	chr2R	10585573	intron	psq +	chr2R	10589868	intron	psq +	chr2R	10594162	intron	psq +	chr2R_18_10585001	chr2R_10585001	RAL-727
761	chr2R	10622352	10622381	chr2R	10637117	10637146	mdg1	8	14765	4.0	8.0	6.0	1.1	14794	chr2R	10622352	intron	CG11883 +	chr2R	10629749	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_8_10625001	chr2R_10625001	RAL-727
768	chr2R	10948034	10948060	chr2R	10955582	10955608	17.6	9	7545	1.5	5.0	3.2	2.1	7574	chr2R	10948034	intergenic	not near genes	chr2R	10951821	intergenic	not near genes	chr2R	10955608	intergenic	not near genes	chr2R_9_10950001	chr2R_10950001	RAL-727
770	chr2R	10979656	10979685	chr2R	10980126	10980149	297	9	466	3.0	4.0	3.5	2.0	493	chr2R	10979656	intergenic	not near genes	chr2R	10979902	intergenic	not near genes	chr2R	10980149	intergenic	not near genes	chr2R_9_10975001	chr2R_10975001	RAL-727
771	chr2R	11009812	11009843	chr2R	11018986	11019016	roo	13	9172	4.5	5.0	4.8	2.2	9204	chr2R	11009812	intron	luna -	chr2R	11014414	intron	luna -	chr2R	11019016	intron	luna -	chr2R_13_11010001	chr2R_11010001	RAL-727
772	chr2R	11019882	11019900	chr2R	11024948	11024951	jockey	6	5062	1.5	4.5	3.0	1.5	5069	chr2R	11019882	intron	luna -	chr2R	11022416	intron	luna -	chr2R	11024951	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-727
775	chr2R	11207817	11207850	chr2R	11208005	11208041	BS	18	189	6.0	5.0	5.5	2.8	224	chr2R	11207817	intron	shn +	chr2R	11207929	intron	shn +	chr2R	11208041	intron	shn +	chr2R_18_11205001	chr2R_11205001	RAL-727
782	chr2R	11297621	11297650	chr2R	11301937	11301971	flea	16	4320	9.5	6.0	7.8	1.8	4350	chr2R	11297621	intergenic	CG42336 -	chr2R	11299796	intergenic	not near genes	chr2R	11301971	5` UTR	CG7741 +	chr2R_16_11295001	chr2R_11295001	RAL-727
784	chr2R	11415527	11415549	chr2R	11418676	11418687	opus	5	3147	3.0	13.5	8.2	0.5	3160	chr2R	11415527	intron	Drip -	chr2R	11417107	intron	Drip -	chr2R	11418687	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-727
785	chr2R	11415550	11415551	chr2R	11418669	11418692	opus	5	3135	1.5	11.5	6.5	0.7	3142	chr2R	11415550	intron	Drip -	chr2R	11417121	intron	Drip -	chr2R	11418692	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-727
786	chr2R	11472655	11472675	chr2R	11473850	11473872	pogo	9	1195	8.5	4.0	6.2	1.2	1217	chr2R	11472655	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473872	intergenic	not near genes	chr2R_9_11470001	chr2R_11470001	RAL-727
812	chr2R	12707519	12707549	chr2R	12715885	12715915	roo	12	8366	0.0	4.0	2.0	4.0	8396	chr2R	12707519	intron	CG42663 +	chr2R	12711717	intron	CG42663 +	chr2R	12715915	intron	CG42663 +	chr2R_12_12710001	chr2R_12710001	RAL-727
816	chr2R	12819457	12819473	chr2R	12824526	12824542	jockey	9	5068	2.5	11.5	7.0	1.1	5085	chr2R	12819457	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824542	intergenic	not near genes	chr2R_9_12820001	chr2R_12820001	RAL-727
821	chr2R	13136848	13136864	chr2R	13141646	13141662	Doc	4	4798	7.0	5.0	6.0	0.6	4814	chr2R	13136848	exon	Cap-G +	chr2R	13139255	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-727
830	chr2R	13580497	13580530	chr2R	13580847	13580880	jockey	12	346	1.5	9.5	5.5	1.8	383	chr2R	13580497	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580880	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_12_13580001	chr2R_13580001	RAL-727
833	chr2R	13728141	13728159	chr2R	13735798	13735816	opus	10	7657	5.0	5.5	5.2	1.6	7675	chr2R	13728141	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735816	intron	fas +	chr2R_10_13730001	chr2R_13730001	RAL-727
837	chr2R	13905603	13905630	chr2R	13907583	13907606	Rt1a	8	1980	3.0	2.5	2.8	2.1	2003	chr2R	13905603	intron	shot -	chr2R	13906604	intron	shot -	chr2R	13907606	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-727
845	chr2R	14394231	14394248	chr2R	14399020	14399037	Doc	8	4789	8.5	4.5	6.5	1.1	4806	chr2R	14394231	intergenic	not near genes	chr2R	14396634	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_8_14395001	chr2R_14395001	RAL-727
846	chr2R	14467293	14467299	chr2R	14476445	14476451	roo	5	9152	8.0	12.0	10.0	0.5	9158	chr2R	14467293	intergenic	not near genes	chr2R	14471872	intergenic	not near genes	chr2R	14476451	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	RAL-727
847	chr2R	14467302	14467326	chr2R	14476443	14476478	roo	17	9144	4.0	12.0	8.0	1.9	9176	chr2R	14467302	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476478	5` UTR	CR44462 +	chr2R_17_14470001	chr2R_14470001	RAL-727
848	chr2R	14497387	14497422	chr2R	14498550	14498588	1360	5	1165	0.0	3.5	1.8	1.8	1201	chr2R	14497387	3` UTR	Cpsf160 -	chr2R	14497988	intron	Cpsf160 -	chr2R	14498588	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	RAL-727
861	chr2R	14889206	14889237	chr2R	14897814	14897845	Max-element	22	8607	10.5	0.0	5.2	3.5	8639	chr2R	14889206	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_22_14890001	chr2R_14890001	RAL-727
866	chr2R	15004726	15004763	chr2R	15005055	15005092	jockey	17	327	3.5	0.5	2.0	5.7	366	chr2R	15004726	intergenic	not near genes	chr2R	15004909	intergenic	not near genes	chr2R	15005092	intergenic	not near genes	chr2R_17_15000001	chr2R_15000001	RAL-727
867	chr2R	15015455	15015489	chr2R	15022879	15022913	mdg1	19	7423	3.5	5.5	4.5	3.5	7458	chr2R	15015455	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022913	intron	hbs +	chr2R_19_15015001	chr2R_15015001	RAL-727
868	chr2R	15084995	15085007	chr2R	15092044	15092056	297	7	7048	4.0	8.0	6.0	1.0	7061	chr2R	15084995	intergenic	not near genes	chr2R	15088526	intergenic	not near genes	chr2R	15092056	5` UTR	CR44457 +	chr2R_7_15085001	chr2R_15085001	RAL-727
872	chr2R	15119317	15119346	chr2R	15127798	15127827	Tirant	11	8477	6.0	4.5	5.2	1.8	8510	chr2R	15119317	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127827	intron	chn +	chr2R_11_15120001	chr2R_15120001	RAL-727
895	chr2R	17147243	17147263	chr2R	17152274	17152294	jockey	9	5031	8.5	7.0	7.8	1.0	5051	chr2R	17147243	intergenic	not near genes	chr2R	17149768	intergenic	not near genes	chr2R	17152294	intergenic	not near genes	chr2R_9_17145001	chr2R_17145001	RAL-727
897	chr2R	17176352	17176388	chr2R	17182542	17182578	diver	15	6189	4.5	3.5	4.0	3.0	6226	chr2R	17176352	intergenic	not near genes	chr2R	17179465	intergenic	not near genes	chr2R	17182578	intergenic	not near genes	chr2R_15_17175001	chr2R_17175001	RAL-727
899	chr2R	17236507	17236539	chr2R	17241711	17241743	copia	8	5204	2.5	4.0	3.2	1.9	5236	chr2R	17236507	intron	mbl +	chr2R	17239125	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_8_17235001	chr2R_17235001	RAL-727
904	chr2R	17782361	17782389	chr2R	17783564	17783592	pogo	8	1203	3.5	4.0	3.8	1.7	1231	chr2R	17782361	intergenic	CG33981 -,fab1 -	chr2R	17782976	intergenic	not near genes	chr2R	17783592	intergenic	mir-31a -	chr2R_8_17780001	chr2R_17780001	RAL-727
905	chr2R	17784024	17784057	chr2R	17784265	17784298	pogo	18	240	4.5	3.0	3.8	3.8	274	chr2R	17784024	intergenic	mir-31a -	chr2R	17784161	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_18_17780001	chr2R_17780001	RAL-727
915	chr2R	18045669	18045703	chr2R	18046021	18046055	jockey	4	352	0.5	3.5	2.0	1.3	386	chr2R	18045669	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046055	intergenic	CG5767 -	chr2R_4_18045001	chr2R_18045001	RAL-727
917	chr2R	18111686	18111714	chr2R	18115554	18115582	F-element	11	3868	6.0	5.5	5.8	1.6	3896	chr2R	18111686	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115582	intergenic	not near genes	chr2R_11_18110001	chr2R_18110001	RAL-727
922	chr2R	18358387	18358422	chr2R	18372599	18372634	roo	24	14211	9.0	6.5	7.8	2.7	14247	chr2R	18358387	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_24_18365001	chr2R_18365001	RAL-727
928	chr2R	18575802	18575828	chr2R	18581986	18582015	3S18	11	6185	5.5	7.0	6.2	1.5	6213	chr2R	18575802	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582015	intron	GEFmeso -	chr2R_11_18575001	chr2R_18575001	RAL-727
929	chr2R	18590867	18590901	chr2R	18600019	18600053	roo	7	9152	1.0	4.5	2.8	1.8	9186	chr2R	18590867	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_7_18595001	chr2R_18595001	RAL-727
948	chr2R	19776597	19776628	chr2R	19779916	19779950	jockey	18	3321	3.5	7.5	5.5	2.8	3353	chr2R	19776597	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779950	intergenic	not near genes	chr2R_18_19775001	chr2R_19775001	RAL-727
952	chr2R	19914848	19914878	chr2R	19922255	19922290	mdg1	10	7409	6.0	2.5	4.2	1.9	7442	chr2R	19914848	intergenic	not near genes	chr2R	19918569	intergenic	not near genes	chr2R	19922290	intergenic	not near genes	chr2R_10_19915001	chr2R_19915001	RAL-727
970	chr2R	20739444	20739477	chr2R	20744212	20744237	F-element	10	4766	4.5	2.0	3.2	2.4	4793	chr2R	20739444	intron	dpr +	chr2R	20741840	intron	dpr +	chr2R	20744237	intron	dpr +	chr2R_10_20740001	chr2R_20740001	RAL-727
971	chr2R	20783313	20783333	chr2R	20788085	20788105	F-element	4	4772	3.0	7.5	5.2	0.6	4792	chr2R	20783313	intergenic	not near genes	chr2R	20785709	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-727
988	chr2R	21738278	21738308	chr2R	21747438	21747467	roo	7	9156	1.0	2.5	1.8	2.5	9189	chr2R	21738278	intergenic	not near genes	chr2R	21742872	intergenic	not near genes	chr2R	21747467	intergenic	not near genes	chr2R_7_21740001	chr2R_21740001	RAL-727
989	chr2R	21753089	21753098	chr2R	21753574	21753583	roo	9	484	10.0	8.0	9.0	0.9	494	chr2R	21753089	intergenic	not near genes	chr2R	21753336	intergenic	not near genes	chr2R	21753583	intergenic	not near genes	chr2R_9_21750001	chr2R_21750001	RAL-727
990	chr2R	21753102	21753115	chr2R	21753568	21753600	roo	15	484	7.0	6.5	6.8	1.9	498	chr2R	21753102	intergenic	not near genes	chr2R	21753351	intergenic	not near genes	chr2R	21753600	intergenic	not near genes	chr2R_15_21750001	chr2R_21750001	RAL-727
995	chr2R	21809524	21809558	chr2R	21817762	21817798	roo	23	8240	4.5	5.5	5.0	3.8	8274	chr2R	21809524	intergenic	not near genes	chr2R	21813661	intergenic	not near genes	chr2R	21817798	intergenic	not near genes	chr2R_23_21810001	chr2R_21810001	RAL-727
1007	chr2R	22349690	22349724	chr2R	22351474	22351505	jockey	13	1783	5.0	7.0	6.0	1.9	1815	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351505	intron	Liprin-gamma -	chr2R_13_22350001	chr2R_22350001	RAL-727
1008	chr2R	22360380	22360413	chr2R	22360813	22360813	jockey	12	424	4.5	4.5	4.5	2.2	433	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360596	intron	Liprin-gamma -	chr2R	22360813	intron	Liprin-gamma -	chr2R_12_22360001	chr2R_22360001	RAL-727
1012	chr2R	22525763	22525771	chr2R	22529322	22529330	jockey	5	3559	3.0	4.0	3.5	1.1	3567	chr2R	22525763	intron	px -	chr2R	22527546	intron	px -	chr2R	22529330	intron	px -	chr2R_5_22525001	chr2R_22525001	RAL-727
1016	chr2R	22774960	22774998	chr2R	22775379	22775417	jockey	25	418	7.0	3.0	5.0	4.2	457	chr2R	22774960	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775417	intron	CG42260 -	chr2R_25_22775001	chr2R_22775001	RAL-727
1039	chr2R	24147090	24147095	chr2R	24154644	24154662	412	6	7567	2.0	3.0	2.5	1.7	7572	chr2R	24147090	intron	Dat +	chr2R	24150876	intron	Dat +	chr2R	24154662	intron	Dat +	chr2R_6_24150001	chr2R_24150001	RAL-727
1040	chr2R	24177234	24177263	chr2R	24184719	24184748	412	13	7485	12.0	2.5	7.2	1.6	7514	chr2R	24177234	3` UTR	Nop60B +	chr2R	24180991	intron	Nop60B +	chr2R	24184748	3` UTR	Nop60B +	chr2R_13_24180001	chr2R_24180001	RAL-727
1045	chr2R	24353426	24353462	chr2R	24361788	24361818	roo	18	8361	3.0	5.0	4.0	3.6	8392	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357622	intron,intron	bs +,CR44811 -	chr2R	24361818	intron,intron	bs +,CR44811 -	chr2R_18_24355001	chr2R_24355001	RAL-727
1051	chr2R	24647595	24647609	chr2R	24655152	24655165	412	6	7556	11.5	3.5	7.5	0.7	7570	chr2R	24647595	intergenic	not near genes	chr2R	24651380	intergenic	not near genes	chr2R	24655165	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-727
1052	chr2R	24727884	24727918	chr2R	24735392	24735397	mdg1	13	7505	2.5	5.5	4.0	2.6	7513	chr2R	24727884	intron	Mid1 -	chr2R	24731640	intron	Mid1 -	chr2R	24735397	intron	Mid1 -	chr2R_13_24730001	chr2R_24730001	RAL-727
1055	chr2R	24763612	24763643	chr2R	24765587	24765602	G2	7	1967	7.0	5.5	6.2	1.0	1990	chr2R	24763612	exon	CG3894 +	chr2R	24764607	intron	CG3894 +	chr2R	24765602	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	RAL-727
1066	chr2R	25141650	25141684	chr2R	25159340	25159374	roo	16	17690	4.5	5.0	4.8	2.8	17724	chr2R	25141650	intergenic	not near genes	chr2R	25150512	intergenic	not near genes	chr2R	25159374	intergenic	not near genes	chr2R_16_25150001	chr2R_25150001	RAL-727
1068	chr3L	110210	110244	chr3L	119377	119411	roo	13	9166	6.0	2.5	4.2	2.5	9201	chr3L	110210	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119411	intergenic	not near genes	chr3L_13_110001	chr3L_110001	RAL-727
1071	chr3L	402696	402718	chr3L	409740	409771	297	14	7047	5.0	7.5	6.2	1.9	7075	chr3L	402696	intergenic	not near genes	chr3L	406234	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_14_405001	chr3L_405001	RAL-727
1079	chr3L	789913	789947	chr3L	790398	790432	roo	17	485	3.0	6.5	4.8	2.9	519	chr3L	789913	intergenic	not near genes	chr3L	790172	intergenic	not near genes	chr3L	790432	intergenic	not near genes	chr3L_17_790001	chr3L_790001	RAL-727
1080	chr3L	858005	858032	chr3L	866486	866512	Tirant	8	8480	3.5	5.0	4.2	1.5	8507	chr3L	858005	intergenic	not near genes	chr3L	862258	intergenic	not near genes	chr3L	866512	5` UTR	CG12502 +	chr3L_8_860001	chr3L_860001	RAL-727
1082	chr3L	925179	925209	chr3L	932605	932635	mdg1	25	7425	6.5	4.0	5.2	4.0	7456	chr3L	925179	intron	Glut1 +	chr3L	928907	intron	Glut1 +	chr3L	932635	intron	Glut1 +	chr3L_25_925001	chr3L_925001	RAL-727
1084	chr3L	939772	939800	chr3L	940893	940921	jockey	10	1120	2.5	5.0	3.8	2.1	1149	chr3L	939772	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-727
1091	chr3L	1154131	1154162	chr3L	1163280	1163312	roo	11	9149	4.0	2.5	3.2	2.6	9181	chr3L	1154131	intron	bab2 -	chr3L	1158722	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_11_1155001	chr3L_1155001	RAL-727
1092	chr3L	1219596	1219623	chr3L	1227329	1227356	412	9	7730	1.5	4.0	2.8	2.4	7760	chr3L	1219596	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227356	intron	mwh +	chr3L_9_1220001	chr3L_1220001	RAL-727
1098	chr3L	1505996	1506031	chr3L	1513593	1513628	17.6	16	7596	8.5	8.5	8.5	1.7	7632	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513628	intron,intron	Psa +,cue -	chr3L_16_1505001	chr3L_1505001	RAL-727
1111	chr3L	2447508	2447536	chr3L	2456660	2456692	roo	8	9155	7.5	4.0	5.8	1.2	9184	chr3L	2447508	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_8_2450001	chr3L_2450001	RAL-727
1125	chr3L	2927837	2927872	chr3L	2936114	2936149	Tirant	11	8275	2.5	5.0	3.8	2.3	8312	chr3L	2927837	intron	Shab +	chr3L	2931993	intron	Shab +	chr3L	2936149	intron	Shab +	chr3L_11_2930001	chr3L_2930001	RAL-727
1128	chr3L	3040325	3040353	chr3L	3042114	3042142	S-element	11	1789	9.0	7.0	8.0	1.2	1817	chr3L	3040325	3` UTR	CG2162 +	chr3L	3041234	intergenic	not near genes	chr3L	3042142	intergenic	Jafrac2 +	chr3L_11_3040001	chr3L_3040001	RAL-727
1129	chr3L	3051743	3051757	chr3L	3051985	3051999	pogo	8	241	14.5	8.0	11.2	0.7	256	chr3L	3051743	3` UTR	CG32485 +	chr3L	3051871	intergenic	CG32485 +	chr3L	3051999	intergenic	CG32485 +	chr3L_8_3050001	chr3L_3050001	RAL-727
1131	chr3L	3281440	3281467	chr3L	3281936	3281963	Doc	18	491	3.5	11.0	7.2	2.2	523	chr3L	3281440	intron	CG12017 +	chr3L	3281702	intron	CG12017 +	chr3L	3281963	intron	CG12017 +	chr3L_18_3280001	chr3L_3280001	RAL-727
1132	chr3L	3281468	3281474	chr3L	3281934	3281970	Doc	5	490	2.0	11.0	6.5	0.7	502	chr3L	3281468	intron	CG12017 +	chr3L	3281719	intron	CG12017 +	chr3L	3281970	intron	CG12017 +	chr3L_5_3280001	chr3L_3280001	RAL-727
1137	chr3L	3475077	3475100	chr3L	3475521	3475543	jockey	7	442	2.5	5.5	4.0	1.4	466	chr3L	3475077	intron	CG42324 +	chr3L	3475310	intron	CG42324 +	chr3L	3475543	intron	CG42324 +	chr3L_7_3475001	chr3L_3475001	RAL-727
1141	chr3L	3601296	3601331	chr3L	3606607	3606639	copia	21	5308	3.0	5.0	4.0	4.2	5343	chr3L	3601296	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_21_3600001	chr3L_3600001	RAL-727
1157	chr3L	4328738	4328765	chr3L	4336236	4336260	412	21	7497	6.5	11.0	8.8	2.1	7522	chr3L	4328738	intron	Cip4 -	chr3L	4332499	intron	Cip4 -	chr3L	4336260	intron	Cip4 -	chr3L_21_4330001	chr3L_4330001	RAL-727
1167	chr3L	4901126	4901148	chr3L	4907316	4907324	diver	7	6187	5.0	1.0	3.0	1.8	6198	chr3L	4901126	intergenic	CG13704 +	chr3L	4904225	intergenic	not near genes	chr3L	4907324	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	RAL-727
1172	chr3L	5034166	5034190	chr3L	5043313	5043342	roo	6	9151	3.5	1.5	2.5	1.7	9176	chr3L	5034166	intron	Con -	chr3L	5038754	intron	Con -	chr3L	5043342	intron	Con -	chr3L_6_5035001	chr3L_5035001	RAL-727
1173	chr3L	5045455	5045483	chr3L	5050236	5050264	Doc	13	4781	9.0	5.5	7.2	1.6	4809	chr3L	5045455	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050264	intron	Con -	chr3L_13_5045001	chr3L_5045001	RAL-727
1191	chr3L	5537722	5537752	chr3L	5538064	5538094	jockey	5	339	4.5	7.5	6.0	0.7	372	chr3L	5537722	intergenic	not near genes	chr3L	5537908	intergenic	not near genes	chr3L	5538094	intergenic	CG10625 -	chr3L_5_5535001	chr3L_5535001	RAL-727
1197	chr3L	5910040	5910064	chr3L	5910281	5910305	pogo	12	241	4.5	12.0	8.2	1.3	265	chr3L	5910040	intron	CG13288 +	chr3L	5910172	intron	CG13288 +	chr3L	5910305	intron	CG13288 +	chr3L_12_5910001	chr3L_5910001	RAL-727
1198	chr3L	5926316	5926338	chr3L	5926506	5926517	BS	10	185	9.5	8.0	8.8	1.0	201	chr3L	5926316	intron	Vap-33B +	chr3L	5926416	intron	Vap-33B +	chr3L	5926517	intron	Vap-33B +	chr3L_10_5925001	chr3L_5925001	RAL-727
1199	chr3L	5926342	5926351	chr3L	5926505	5926514	BS	8	175	5.5	7.5	6.5	1.1	172	chr3L	5926342	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926514	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	RAL-727
1203	chr3L	6001679	6001717	chr3L	6004378	6004417	jockey	19	2698	4.0	2.0	3.0	4.8	2738	chr3L	6001679	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004417	intron	PVRAP +	chr3L_19_6000001	chr3L_6000001	RAL-727
1204	chr3L	6040368	6040384	chr3L	6042724	6042740	Doc	5	2356	7.0	4.0	5.5	0.8	2372	chr3L	6040368	intergenic	Jon65Aiv +	chr3L	6041554	intergenic	not near genes	chr3L	6042740	intergenic	not near genes	chr3L_5_6040001	chr3L_6040001	RAL-727
1208	chr3L	6220921	6220947	chr3L	6230064	6230067	roo	19	9148	10.5	6.5	8.5	2.0	9146	chr3L	6220921	5` UTR	pncr008:3L +	chr3L	6225494	intergenic	not near genes	chr3L	6230067	intergenic	not near genes	chr3L_19_6225001	chr3L_6225001	RAL-727
1214	chr3L	6335016	6335037	chr3L	6335485	6335506	297	4	470	4.0	7.5	5.8	0.6	490	chr3L	6335016	intron	CG13300 -	chr3L	6335261	intron	CG13300 -	chr3L	6335506	intron	CG13300 -	chr3L_4_6335001	chr3L_6335001	RAL-727
1217	chr3L	6405658	6405691	chr3L	6432122	6432155	roo	7	26464	3.0	5.5	4.2	1.3	26497	chr3L	6405658	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432155	intron	CG42747 +	chr3L_7_6415001	chr3L_6415001	RAL-727
1225	chr3L	6781126	6781143	chr3L	6783139	6783156	Doc	5	2013	4.5	0.0	2.2	1.6	2030	chr3L	6781126	intergenic	not near genes	chr3L	6782141	intergenic	not near genes	chr3L	6783156	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	RAL-727
1227	chr3L	6887518	6887548	chr3L	6895010	6895040	roo	8	7492	7.0	3.5	5.2	1.3	7522	chr3L	6887518	intergenic	not near genes	chr3L	6891279	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_8_6890001	chr3L_6890001	RAL-727
1240	chr3L	7498735	7498746	chr3L	7503526	7503537	F-element	4	4791	3.5	0.5	2.0	1.3	4802	chr3L	7498735	5` UTR	CG8539 -	chr3L	7501136	intergenic	not near genes	chr3L	7503537	intergenic	not near genes	chr3L_4_7500001	chr3L_7500001	RAL-727
1245	chr3L	7793716	7793745	chr3L	7800768	7800797	297	17	7051	8.0	8.0	8.0	1.9	7081	chr3L	7793716	intron	CG32369 -	chr3L	7797256	intron	CG32369 -	chr3L	7800797	intron	CG32369 -	chr3L_17_7795001	chr3L_7795001	RAL-727
1247	chr3L	7886518	7886546	chr3L	7889036	7889064	Stalker4	12	2518	0.5	4.5	2.5	3.4	2546	chr3L	7886518	intron	CG32365 +	chr3L	7887791	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_12_7885001	chr3L_7885001	RAL-727
1248	chr3L	7916831	7916861	chr3L	7926002	7926032	roo	7	9171	5.5	3.0	4.2	1.3	9201	chr3L	7916831	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926032	3` UTR	syd -	chr3L_7_7920001	chr3L_7920001	RAL-727
1250	chr3L	7985377	7985400	chr3L	7987706	7987727	NOF	10	2329	7.0	8.0	7.5	1.2	2350	chr3L	7985377	intron	nmo +	chr3L	7986552	intron	nmo +	chr3L	7987727	intron	nmo +	chr3L_10_7985001	chr3L_7985001	RAL-727
1251	chr3L	8019701	8019734	chr3L	8024113	8024147	NOF	7	4412	5.0	3.5	4.2	1.3	4446	chr3L	8019701	intron	nmo +	chr3L	8021924	intron	nmo +	chr3L	8024147	intron	nmo +	chr3L_7_8020001	chr3L_8020001	RAL-727
1260	chr3L	8498300	8498327	chr3L	8505767	8505794	blood	7	7466	9.5	7.5	8.5	0.7	7494	chr3L	8498300	intron	CG43163 -	chr3L	8502047	intron	CG43163 -	chr3L	8505794	intron	CG43163 -	chr3L_7_8500001	chr3L_8500001	RAL-727
1267	chr3L	8791275	8791292	chr3L	8796694	8796711	I-element	5	5420	11.0	0.0	5.5	0.8	5436	chr3L	8791275	exon	Fhos +	chr3L	8793993	intron	Fhos +	chr3L	8796711	intron	Fhos +	chr3L_5_8790001	chr3L_8790001	RAL-727
1270	chr3L	9076929	9076960	chr3L	9084489	9084520	412	15	7559	8.0	6.0	7.0	1.9	7591	chr3L	9076929	exon	Tequila +	chr3L	9080724	intron	Tequila +	chr3L	9084520	exon	Tequila +	chr3L_15_9080001	chr3L_9080001	RAL-727
1272	chr3L	9130558	9130579	chr3L	9134319	9134340	412	8	3760	7.0	4.5	5.8	1.2	3782	chr3L	9130558	intergenic	bol -	chr3L	9132449	intergenic	not near genes	chr3L	9134340	intergenic	Dhpr +	chr3L_8_9130001	chr3L_9130001	RAL-727
1273	chr3L	9164701	9164732	chr3L	9166161	9166199	hobo	11	1464	4.5	2.0	3.2	2.6	1498	chr3L	9164701	intron	Rdl -	chr3L	9165450	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_11_9165001	chr3L_9165001	RAL-727
1275	chr3L	9219244	9219281	chr3L	9219913	9219916	jockey	16	667	6.5	3.5	5.0	2.7	672	chr3L	9219244	intergenic	not near genes	chr3L	9219580	intergenic	not near genes	chr3L	9219916	intergenic	not near genes	chr3L_16_9215001	chr3L_9215001	RAL-727
1276	chr3L	9270616	9270651	chr3L	9278371	9278406	roo	7	7754	3.0	3.0	3.0	1.8	7790	chr3L	9270616	intron	GluRIB +	chr3L	9274511	intron	GluRIB +	chr3L	9278406	exon	GluRIB +	chr3L_7_9270001	chr3L_9270001	RAL-727
1277	chr3L	9443518	9443531	chr3L	9445309	9445322	S-element	5	1791	8.5	9.0	8.8	0.5	1804	chr3L	9443518	intron	CG33926 +	chr3L	9444420	intron	CG33926 +	chr3L	9445322	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-727
1278	chr3L	9501704	9501734	chr3L	9502187	9502217	roo	9	482	2.0	3.5	2.8	2.4	513	chr3L	9501704	intron	path -	chr3L	9501960	intron	path -	chr3L	9502217	intron	path -	chr3L_9_9500001	chr3L_9500001	RAL-727
1282	chr3L	9571901	9571934	chr3L	9572249	9572282	jockey	12	348	6.5	8.0	7.2	1.5	381	chr3L	9571901	intron	CG42673 +	chr3L	9572092	intron	CG42673 +	chr3L	9572282	intron	CG42673 +	chr3L_12_9570001	chr3L_9570001	RAL-727
1283	chr3L	9575906	9575944	chr3L	9580984	9580990	jockey	14	5074	4.5	3.5	4.0	2.8	5084	chr3L	9575906	intron	CG42673 +	chr3L	9578448	intron	CG42673 +	chr3L	9580990	intron	CG42673 +	chr3L_14_9575001	chr3L_9575001	RAL-727
1291	chr3L	9929678	9929700	chr3L	9938458	9938479	roo	13	8778	6.5	8.0	7.2	1.6	8801	chr3L	9929678	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_13_9930001	chr3L_9930001	RAL-727
1304	chr3L	10414949	10414978	chr3L	10417314	10417350	Doc	18	2370	3.5	3.0	3.2	4.3	2401	chr3L	10414949	intergenic	CG12362 +	chr3L	10416150	intergenic	not near genes	chr3L	10417350	intergenic	not near genes	chr3L_18_10415001	chr3L_10415001	RAL-727
1315	chr3L	11087058	11087087	chr3L	11088846	11088876	S-element	5	1787	4.5	2.5	3.5	1.1	1818	chr3L	11087058	intron	JIL-1 -	chr3L	11087967	intron	JIL-1 -	chr3L	11088876	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-727
1316	chr3L	11105296	11105327	chr3L	11107007	11107038	X-element	10	1710	3.5	4.0	3.8	2.1	1742	chr3L	11105296	intergenic	not near genes	chr3L	11106167	intergenic	not near genes	chr3L	11107038	exon	CG32073 -	chr3L_10_11105001	chr3L_11105001	RAL-727
1322	chr3L	11264471	11264497	chr3L	11271423	11271449	17.6	12	6952	6.0	5.5	5.8	1.8	6978	chr3L	11264471	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271449	intergenic	not near genes	chr3L_12_11265001	chr3L_11265001	RAL-727
1324	chr3L	11329689	11329724	chr3L	11332894	11332929	jockey	5	3204	6.5	3.0	4.8	0.9	3240	chr3L	11329689	intergenic	not near genes	chr3L	11331309	intergenic	not near genes	chr3L	11332929	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-727
1329	chr3L	11564789	11564813	chr3L	11572404	11572412	412	4	7609	2.0	1.0	1.5	1.6	7623	chr3L	11564789	exon	CG33267 +	chr3L	11568600	intron	CG33267 +	chr3L	11572412	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-727
1331	chr3L	11723081	11723111	chr3L	11727876	11727906	Doc	9	4795	4.5	2.0	3.2	2.1	4825	chr3L	11723081	3` UTR	Bmcp +	chr3L	11725494	intron	Bmcp +	chr3L	11727906	3` UTR	Bmcp +	chr3L_9_11725001	chr3L_11725001	RAL-727
1337	chr3L	11864553	11864566	chr3L	11865848	11865854	pogo	5	1294	12.5	8.0	10.2	0.4	1301	chr3L	11864553	intron	CG44837 -	chr3L	11865204	intron	CG44837 -	chr3L	11865854	intron	CG44837 -	chr3L_5_11865001	chr3L_11865001	RAL-727
1338	chr3L	11864572	11864585	chr3L	11865847	11865880	pogo	16	1290	6.0	7.5	6.8	2.1	1308	chr3L	11864572	intron	CG44837 -	chr3L	11865226	intron	CG44837 -	chr3L	11865880	intron	CG44837 -	chr3L_16_11865001	chr3L_11865001	RAL-727
1366	chr3L	12874937	12874958	chr3L	12877229	12877250	jockey	16	2292	6.0	7.0	6.5	2.1	2313	chr3L	12874937	intergenic	not near genes	chr3L	12876094	intergenic	not near genes	chr3L	12877250	intergenic	not near genes	chr3L_16_12875001	chr3L_12875001	RAL-727
1367	chr3L	12919290	12919311	chr3L	12924741	12924746	Rt1c	13	5459	8.0	7.5	7.8	1.5	5456	chr3L	12919290	intergenic	not near genes	chr3L	12922018	intergenic	not near genes	chr3L	12924746	intergenic	not near genes	chr3L_13_12920001	chr3L_12920001	RAL-727
1369	chr3L	12957789	12957820	chr3L	12962266	12962287	copia	17	4480	4.5	6.5	5.5	2.6	4498	chr3L	12957789	intergenic	not near genes	chr3L	12960038	intergenic	not near genes	chr3L	12962287	intergenic	not near genes	chr3L_17_12960001	chr3L_12960001	RAL-727
1387	chr3L	13525160	13525190	chr3L	13532951	13532974	roo	19	7792	10.0	7.0	8.5	2.0	7814	chr3L	13525160	intergenic	not near genes	chr3L	13529067	intergenic	not near genes	chr3L	13532974	intergenic	not near genes	chr3L_19_13525001	chr3L_13525001	RAL-727
1395	chr3L	13804545	13804578	chr3L	13822831	13822857	roo	9	18285	4.5	6.5	5.5	1.4	18312	chr3L	13804545	intergenic	not near genes	chr3L	13813701	intergenic	not near genes	chr3L	13822857	intergenic	not near genes	chr3L_9_13810001	chr3L_13810001	RAL-727
1403	chr3L	14267375	14267392	chr3L	14271810	14271832	F-element	8	4439	6.0	4.5	5.2	1.3	4457	chr3L	14267375	intergenic	not near genes	chr3L	14269604	intergenic	not near genes	chr3L	14271832	intergenic	not near genes	chr3L_8_14265001	chr3L_14265001	RAL-727
1404	chr3L	14267394	14267403	chr3L	14271808	14271809	F-element	6	4425	4.0	4.5	4.2	1.2	4415	chr3L	14267394	intergenic	not near genes	chr3L	14269602	intergenic	not near genes	chr3L	14271809	intergenic	not near genes	chr3L_6_14265001	chr3L_14265001	RAL-727
1406	chr3L	14295985	14296016	chr3L	14296466	14296502	roo	13	481	1.0	5.5	3.2	3.1	517	chr3L	14295985	intron	fz +	chr3L	14296244	intron	fz +	chr3L	14296502	intron	fz +	chr3L_13_14295001	chr3L_14295001	RAL-727
1407	chr3L	14312023	14312058	chr3L	14316834	14316841	X-element	12	4807	0.5	1.0	0.8	6.7	4818	chr3L	14312023	exon	fz +	chr3L	14314432	intron	fz +	chr3L	14316841	intron	fz +	chr3L_12_14310001	chr3L_14310001	RAL-727
1416	chr3L	14468444	14468473	chr3L	14473650	14473679	copia	13	5206	5.0	7.0	6.0	1.9	5235	chr3L	14468444	intron	bbg -	chr3L	14471062	intron	bbg -	chr3L	14473679	intron	bbg -	chr3L_13_14470001	chr3L_14470001	RAL-727
1424	chr3L	14721184	14721208	chr3L	14723027	14723051	Rt1c	7	1839	3.0	2.5	2.8	1.8	1867	chr3L	14721184	intron	ome +	chr3L	14722118	intron	ome +	chr3L	14723051	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-727
1425	chr3L	14725604	14725628	chr3L	14728598	14728622	Doc	5	2994	8.0	11.5	9.8	0.5	3018	chr3L	14725604	intron	ome +	chr3L	14727113	intron	ome +	chr3L	14728622	intron	ome +	chr3L_5_14725001	chr3L_14725001	RAL-727
1431	chr3L	14970756	14970762	chr3L	14971066	14971072	F-element	5	310	3.5	3.0	3.2	1.2	316	chr3L	14970756	intergenic	Tom +	chr3L	14970914	intergenic	not near genes	chr3L	14971072	intergenic	not near genes	chr3L_5_14970001	chr3L_14970001	RAL-727
1433	chr3L	15085047	15085083	chr3L	15086213	15086244	1360	10	1161	4.0	2.0	3.0	2.5	1197	chr3L	15085047	intron	cp309 -	chr3L	15085646	intron	cp309 -	chr3L	15086244	intron	cp309 -	chr3L_10_15085001	chr3L_15085001	RAL-727
1441	chr3L	15295772	15295801	chr3L	15298615	15298644	gypsy5	9	2843	5.0	4.5	4.8	1.6	2872	chr3L	15295772	intergenic	not near genes	chr3L	15297208	intergenic	not near genes	chr3L	15298644	intergenic	Best4 +	chr3L_9_15295001	chr3L_15295001	RAL-727
1443	chr3L	15423760	15423784	chr3L	15426604	15426628	opus	9	2844	3.0	2.0	2.5	2.6	2868	chr3L	15423760	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426628	intergenic	not near genes	chr3L_9_15425001	chr3L_15425001	RAL-727
1456	chr3L	15899229	15899262	chr3L	15899795	15899808	jockey	5	553	3.0	5.5	4.2	1.0	579	chr3L	15899229	intergenic	pHCl -	chr3L	15899518	intergenic	pHCl -	chr3L	15899808	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	RAL-727
1457	chr3L	15929196	15929227	chr3L	15938343	15938373	roo	14	9147	8.0	3.5	5.8	2.1	9177	chr3L	15929196	intron	Pka-C3 -	chr3L	15933784	intron	Pka-C3 -	chr3L	15938373	intron	Pka-C3 -	chr3L_14_15930001	chr3L_15930001	RAL-727
1464	chr3L	16184104	16184122	chr3L	16188923	16188941	X-element	6	4819	9.0	4.5	6.8	0.8	4837	chr3L	16184104	intergenic	not near genes	chr3L	16186522	intergenic	not near genes	chr3L	16188941	intergenic	not near genes	chr3L_6_16185001	chr3L_16185001	RAL-727
1465	chr3L	16184124	16184140	chr3L	16188921	16188959	X-element	8	4813	3.0	4.5	3.8	1.7	4835	chr3L	16184124	intergenic	not near genes	chr3L	16186542	intergenic	not near genes	chr3L	16188959	intergenic	not near genes	chr3L_8_16185001	chr3L_16185001	RAL-727
1471	chr3L	16443850	16443879	chr3L	16446190	16446219	Doc	15	2338	5.5	7.5	6.5	2.0	2369	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446219	intron,intron	CG33158 +,dsx-c73A -	chr3L_15_16445001	chr3L_16445001	RAL-727
1473	chr3L	16493976	16494012	chr3L	16494493	16494493	jockey	23	510	10.0	3.5	6.8	2.9	517	chr3L	16493976	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494234	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494493	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_23_16490001	chr3L_16490001	RAL-727
1477	chr3L	16616515	16616537	chr3L	16621843	16621865	297	9	5327	5.5	8.0	6.8	1.2	5350	chr3L	16616515	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621865	3` UTR	Abl -	chr3L_9_16615001	chr3L_16615001	RAL-727
1488	chr3L	16945725	16945757	chr3L	16954878	16954891	roo	23	9148	9.5	2.5	6.0	3.3	9166	chr3L	16945725	exon	Obp73a +	chr3L	16950308	intergenic	not near genes	chr3L	16954891	5` UTR	Nc73EF +	chr3L_23_16950001	chr3L_16950001	RAL-727
1491	chr3L	17034935	17034939	chr3L	17035123	17035127	G2	4	188	2.0	2.5	2.2	1.2	192	chr3L	17034935	intergenic	not near genes	chr3L	17035031	intergenic	not near genes	chr3L	17035127	intergenic	not near genes	chr3L_4_17035001	chr3L_17035001	RAL-727
1492	chr3L	17085002	17085031	chr3L	17094151	17094171	roo	18	9148	9.0	6.0	7.5	2.1	9169	chr3L	17085002	intron	Rbp6 -	chr3L	17089586	intron	Rbp6 -	chr3L	17094171	intron	Rbp6 -	chr3L_18_17085001	chr3L_17085001	RAL-727
1503	chr3L	17516987	17516997	chr3L	17524540	17524554	412	5	7556	9.5	11.0	10.2	0.4	7567	chr3L	17516987	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524554	3` UTR	CG7564 +	chr3L_5_17520001	chr3L_17520001	RAL-727
1504	chr3L	17516998	17517010	chr3L	17524536	17524568	412	6	7548	7.5	8.0	7.8	0.7	7570	chr3L	17516998	intron	CG7564 +	chr3L	17520783	intron	CG7564 +	chr3L	17524568	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-727
1507	chr3L	17730855	17730883	chr3L	17738185	17738208	mdg1	10	7330	3.0	5.0	4.0	2.0	7353	chr3L	17730855	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738208	intron	Ccn +	chr3L_10_17730001	chr3L_17730001	RAL-727
1509	chr3L	17799811	17799840	chr3L	17801598	17801605	S-element	8	1784	2.0	4.0	3.0	2.0	1794	chr3L	17799811	intron	NUCB1 -	chr3L	17800708	intron	NUCB1 -	chr3L	17801605	intron	NUCB1 -	chr3L_8_17800001	chr3L_17800001	RAL-727
1515	chr3L	17918384	17918397	chr3L	17921187	17921200	opus	5	2803	3.0	6.5	4.8	0.9	2816	chr3L	17918384	intergenic	not near genes	chr3L	17919792	intergenic	not near genes	chr3L	17921200	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	RAL-727
1524	chr3L	18047705	18047741	chr3L	18056762	18056798	roo	19	9057	3.5	3.5	3.5	4.2	9093	chr3L	18047705	intron	Eip75B -	chr3L	18052252	intron	Eip75B -	chr3L	18056798	intron	Eip75B -	chr3L_19_18050001	chr3L_18050001	RAL-727
1539	chr3L	18506134	18506150	chr3L	18509597	18509613	F-element	10	3462	5.0	4.5	4.8	1.7	3479	chr3L	18506134	intergenic	not near genes	chr3L	18507874	intergenic	not near genes	chr3L	18509613	intergenic	not near genes	chr3L_10_18505001	chr3L_18505001	RAL-727
1540	chr3L	18506151	18506161	chr3L	18509596	18509624	F-element	4	3458	3.0	4.0	3.5	0.9	3473	chr3L	18506151	intergenic	not near genes	chr3L	18507888	intergenic	not near genes	chr3L	18509624	intergenic	not near genes	chr3L_4_18505001	chr3L_18505001	RAL-727
1541	chr3L	18528630	18528660	chr3L	18537791	18537819	roo	17	9160	4.0	7.0	5.5	2.6	9189	chr3L	18528630	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537819	intergenic	not near genes	chr3L_17_18530001	chr3L_18530001	RAL-727
1549	chr3L	18710757	18710790	chr3L	18718709	18718742	Stalker2	13	7950	4.5	2.0	3.2	3.1	7985	chr3L	18710757	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718742	intergenic	not near genes	chr3L_13_18710001	chr3L_18710001	RAL-727
1550	chr3L	18772407	18772438	chr3L	18781088	18781102	roo	18	8680	8.0	9.0	8.5	1.9	8695	chr3L	18772407	intron	ftz-f1 -	chr3L	18776754	intron	ftz-f1 -	chr3L	18781102	intron	ftz-f1 -	chr3L_18_18775001	chr3L_18775001	RAL-727
1551	chr3L	18833788	18833812	chr3L	18834944	18834976	1360	11	1161	7.0	5.5	6.2	1.5	1188	chr3L	18833788	intron	Indy -	chr3L	18834382	intron	Indy -	chr3L	18834976	intron	Indy -	chr3L_11_18830001	chr3L_18830001	RAL-727
1558	chr3L	19008834	19008872	chr3L	19009175	19009198	jockey	12	333	3.0	6.5	4.8	2.1	364	chr3L	19008834	intron	nkd -	chr3L	19009016	intron	nkd -	chr3L	19009198	intron	nkd -	chr3L_12_19005001	chr3L_19005001	RAL-727
1560	chr3L	19115641	19115671	chr3L	19115819	19115839	BS	14	178	8.0	2.5	5.2	2.3	198	chr3L	19115641	intron	CG14082 -	chr3L	19115740	intron	CG14082 -	chr3L	19115839	intron	CG14082 -	chr3L_14_19115001	chr3L_19115001	RAL-727
1561	chr3L	19117040	19117073	chr3L	19124487	19124520	mdg1	14	7446	10.0	8.0	9.0	1.4	7480	chr3L	19117040	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124520	intron	CG14082 -	chr3L_14_19120001	chr3L_19120001	RAL-727
1565	chr3L	19208061	19208090	chr3L	19209433	19209464	Doc	13	1372	4.0	4.0	4.0	2.6	1403	chr3L	19208061	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209464	intron	fz2 -	chr3L_13_19205001	chr3L_19205001	RAL-727
1585	chr3L	19820298	19820315	chr3L	19827847	19827864	412	5	7549	5.5	1.5	3.5	1.1	7566	chr3L	19820298	intron	Deaf1 +	chr3L	19824081	intron	Deaf1 +	chr3L	19827864	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	RAL-727
1586	chr3L	19848503	19848528	chr3L	19857692	19857719	roo	5	9190	5.0	2.0	3.5	1.1	9216	chr3L	19848503	intron	Papss +	chr3L	19853111	intron	Papss +	chr3L	19857719	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-727
1587	chr3L	19861824	19861851	chr3L	19863612	19863639	S-element	10	1787	5.0	3.0	4.0	2.0	1815	chr3L	19861824	5` UTR	CR45433 +	chr3L	19862732	intergenic	not near genes	chr3L	19863639	intergenic	not near genes	chr3L_10_19860001	chr3L_19860001	RAL-727
1595	chr3L	20113656	20113690	chr3L	20122913	20122947	roo	15	9257	6.5	4.5	5.5	2.3	9291	chr3L	20113656	intergenic	not near genes	chr3L	20118302	intergenic	not near genes	chr3L	20122947	intergenic	not near genes	chr3L_15_20115001	chr3L_20115001	RAL-727
1596	chr3L	20257346	20257361	chr3L	20258454	20258481	pogo	13	1119	3.0	5.5	4.2	2.5	1135	chr3L	20257346	intron	rdgC +	chr3L	20257914	intron	rdgC +	chr3L	20258481	intron	rdgC +	chr3L_13_20255001	chr3L_20255001	RAL-727
1604	chr3L	20476754	20476784	chr3L	20484353	20484383	springer	15	7599	8.0	8.5	8.2	1.6	7629	chr3L	20476754	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484383	3` UTR	ZnT77C -	chr3L_15_20480001	chr3L_20480001	RAL-727
1605	chr3L	20487661	20487672	chr3L	20488112	20488123	INE-1	7	451	15.5	2.5	9.0	0.7	462	chr3L	20487661	intron	ZnT77C -	chr3L	20487892	intron	ZnT77C -	chr3L	20488123	intron	ZnT77C -	chr3L_7_20485001	chr3L_20485001	RAL-727
1608	chr3L	20590068	20590074	chr3L	20590605	20590606	412	4	536	9.0	2.5	5.8	0.6	538	chr3L	20590068	intergenic	not near genes	chr3L	20590337	intergenic	not near genes	chr3L	20590606	intergenic	not near genes	chr3L_4_20590001	chr3L_20590001	RAL-727
1614	chr3L	21014922	21014947	chr3L	21023396	21023404	Tirant	9	8473	7.5	2.5	5.0	1.5	8482	chr3L	21014922	intron	skd -	chr3L	21019163	intron	skd -	chr3L	21023404	intron	skd -	chr3L_9_21015001	chr3L_21015001	RAL-727
1618	chr3L	21151863	21151897	chr3L	21156947	21156981	flea	14	5084	2.0	1.0	1.5	5.6	5118	chr3L	21151863	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156981	intron	Ac78C -	chr3L_14_21150001	chr3L_21150001	RAL-727
1619	chr3L	21243754	21243771	chr3L	21251312	21251314	412	5	7558	2.0	4.5	3.2	1.2	7560	chr3L	21243754	intron	Eip78C +	chr3L	21247534	intron	Eip78C +	chr3L	21251314	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	RAL-727
1622	chr3L	21306145	21306180	chr3L	21315304	21315339	roo	16	9159	5.0	4.0	4.5	2.9	9194	chr3L	21306145	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310742	intron	Pc -	chr3L	21315339	3` UTR	Pc -	chr3L_16_21310001	chr3L_21310001	RAL-727
1623	chr3L	21361735	21361749	chr3L	21362679	21362703	G2	9	951	4.0	3.5	3.8	1.9	968	chr3L	21361735	intergenic	not near genes	chr3L	21362219	intergenic	not near genes	chr3L	21362703	intergenic	not near genes	chr3L_9_21360001	chr3L_21360001	RAL-727
1624	chr3L	21372721	21372753	chr3L	21379229	21379261	McClintock	12	6508	3.5	3.5	3.5	2.7	6540	chr3L	21372721	intergenic	not near genes	chr3L	21375991	intergenic	not near genes	chr3L	21379261	intergenic	not near genes	chr3L_12_21375001	chr3L_21375001	RAL-727
1628	chr3L	21498836	21498869	chr3L	21500472	21500494	1360	9	1630	2.5	7.5	5.0	1.5	1658	chr3L	21498836	intron	Glg1 -	chr3L	21499665	intron	Glg1 -	chr3L	21500494	intron	Glg1 -	chr3L_9_21495001	chr3L_21495001	RAL-727
1630	chr3L	21749325	21749351	chr3L	21754473	21754501	Doc	4	5152	4.5	7.0	5.8	0.6	5176	chr3L	21749325	intron	Syn1 -	chr3L	21751913	intron	Syn1 -	chr3L	21754501	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-727
1638	chr3L	22099683	22099704	chr3L	22105869	22105890	3S18	9	6186	7.5	4.5	6.0	1.3	6207	chr3L	22099683	intergenic	not near genes	chr3L	22102786	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_9_22100001	chr3L_22100001	RAL-727
1643	chr3L	22555772	22555793	chr3L	22563242	22563242	blood	5	7465	2.5	1.0	1.8	1.8	7470	chr3L	22555772	intergenic	not near genes	chr3L	22559507	intergenic	not near genes	chr3L	22563242	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-727
1644	chr3L	22577618	22577647	chr3L	22582404	22582435	Doc	8	4786	1.5	3.0	2.2	2.5	4817	chr3L	22577618	intergenic	not near genes	chr3L	22580026	intergenic	not near genes	chr3L	22582435	3` UTR	CG14459 -	chr3L_8_22580001	chr3L_22580001	RAL-727
1646	chr3L	22617190	22617222	chr3L	22624642	22624674	blood	15	7451	3.5	3.0	3.2	3.6	7484	chr3L	22617190	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624674	intron	CG14459 -	chr3L_15_22620001	chr3L_22620001	RAL-727
1648	chr3L	22761387	22761405	chr3L	22766821	22766839	Ivk	14	5434	9.5	3.0	6.2	1.9	5452	chr3L	22761387	intron	SPoCk +	chr3L	22764113	intron	SPoCk +	chr3L	22766839	intron	SPoCk +	chr3L_14_22760001	chr3L_22760001	RAL-727
1649	chr3L	22761415	22761419	chr3L	22766820	22766853	Ivk	6	5428	5.5	3.0	4.2	1.2	5438	chr3L	22761415	intron	SPoCk +	chr3L	22764134	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_6_22760001	chr3L_22760001	RAL-727
1652	chr3L	22865983	22866012	chr3L	22867113	22867145	Doc	13	1130	8.0	6.5	7.2	1.6	1162	chr3L	22865983	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867145	intron	CG33170 +	chr3L_13_22865001	chr3L_22865001	RAL-727
1655	chr3L	22989869	22989888	chr3L	22996835	22996862	297	16	6971	6.0	4.0	5.0	2.7	6993	chr3L	22989869	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996862	intergenic	not near genes	chr3L_16_22990001	chr3L_22990001	RAL-727
1658	chr3L	24168793	24168821	chr3L	24176121	24176148	ZAM	5	7323	1.0	6.5	3.8	1.0	7355	chr3L	24168793	intron	Snap25 +	chr3L	24172470	intron	Snap25 +	chr3L	24176148	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-727
1660	chr3L	24791903	24791925	chr3L	24796682	24796704	Doc	17	4779	2.5	3.0	2.8	4.5	4801	chr3L	24791903	intergenic	not near genes	chr3L	24794304	intergenic	not near genes	chr3L	24796704	intergenic	not near genes	chr3L_17_24790001	chr3L_24790001	RAL-727
1667	chr3L	26029453	26029465	chr3L	26030171	26030183	G3	8	716	0.0	2.5	1.2	3.6	730	chr3L	26029453	intergenic	not near genes	chr3L	26029818	intergenic	not near genes	chr3L	26030183	intergenic	not near genes	chr3L_8_26025001	chr3L_26025001	RAL-727
1669	chr3R	1867175	1867175	chr3R	1954887	1954915	Doc3-element	4	87722	6.5	0.5	3.5	0.9	87740	chr3R	1867175	intron	CG42623 +	chr3R	1911045	intron	CG42623 +	chr3R	1954915	intergenic	not near genes	chr3R_4_1910001	chr3R_1910001	RAL-727
1673	chr3R	4105039	4105069	chr3R	4110243	4110273	copia	10	5204	2.0	2.5	2.2	3.1	5234	chr3R	4105039	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110273	intergenic	not near genes	chr3R_10_4105001	chr3R_4105001	RAL-727
1675	chr3R	4206072	4206104	chr3R	4211647	4211679	mdg3	18	5575	3.0	5.5	4.2	3.5	5607	chr3R	4206072	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_18_4205001	chr3R_4205001	RAL-727
1676	chr3R	4366756	4366791	chr3R	4375138	4375174	roo	10	8381	7.0	3.0	5.0	1.7	8418	chr3R	4366756	3` UTR	CG1090 +	chr3R	4370965	intergenic	not near genes	chr3R	4375174	5` UTR	CR44922 +	chr3R_10_4370001	chr3R_4370001	RAL-727
1677	chr3R	4408408	4408428	chr3R	4412712	4412731	Juan	18	4303	12.5	4.5	8.5	1.9	4323	chr3R	4408408	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412731	intron	CG32944 -	chr3R_18_4410001	chr3R_4410001	RAL-727
1678	chr3R	4408430	4408442	chr3R	4412708	4412746	Juan	8	4299	6.5	4.5	5.5	1.2	4316	chr3R	4408430	intron	CG32944 -	chr3R	4410588	intron	CG32944 -	chr3R	4412746	intron	CG32944 -	chr3R_8_4410001	chr3R_4410001	RAL-727
1679	chr3R	4609546	4609582	chr3R	4610710	4610744	1360	23	1163	6.0	6.5	6.2	3.2	1198	chr3R	4609546	intergenic	not near genes	chr3R	4610145	intergenic	not near genes	chr3R	4610744	intergenic	not near genes	chr3R_23_4610001	chr3R_4610001	RAL-727
1681	chr3R	4683179	4683207	chr3R	4684938	4684956	S-element	9	1758	7.5	2.0	4.8	1.6	1777	chr3R	4683179	intron	CG43427 +	chr3R	4684068	intron	CG43427 +	chr3R	4684956	intron	CG43427 +	chr3R_9_4680001	chr3R_4680001	RAL-727
1682	chr3R	4753240	4753278	chr3R	4757543	4757581	F-element	9	4297	2.0	5.0	3.5	2.0	4341	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755410	intron,intron	atms +,CG44098 -	chr3R	4757581	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-727
1683	chr3R	4759716	4759753	chr3R	4761213	4761240	hopper2	21	1495	5.0	14.0	9.5	2.0	1524	chr3R	4759716	intron,intron	atms +,CG44098 -	chr3R	4760478	intron,intron	atms +,CG44098 -	chr3R	4761240	intron,intron	atms +,CG44098 -	chr3R_21_4760001	chr3R_4760001	RAL-727
1686	chr3R	4887478	4887508	chr3R	4894855	4894863	rover	9	7374	3.5	1.5	2.5	2.6	7385	chr3R	4887478	intergenic	not near genes	chr3R	4891170	intergenic	not near genes	chr3R	4894863	intergenic	not near genes	chr3R_9_4890001	chr3R_4890001	RAL-727
1693	chr3R	5045856	5045874	chr3R	5052958	5052976	HMS-Beagle	7	7102	2.0	5.0	3.5	1.6	7120	chr3R	5045856	intron	CR43635 -	chr3R	5049416	intergenic	not near genes	chr3R	5052976	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-727
1694	chr3R	5067980	5068013	chr3R	5073497	5073530	mdg3	24	5516	5.5	5.5	5.5	3.7	5550	chr3R	5067980	intergenic	not near genes	chr3R	5070755	intergenic	not near genes	chr3R	5073530	intergenic	not near genes	chr3R_24_5070001	chr3R_5070001	RAL-727
1700	chr3R	5338400	5338415	chr3R	5343577	5343592	Rt1c	6	5177	7.5	10.0	8.8	0.6	5192	chr3R	5338400	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343592	intron	mtd -	chr3R_6_5340001	chr3R_5340001	RAL-727
1701	chr3R	5338417	5338429	chr3R	5343567	5343606	Rt1c	7	5172	6.0	5.0	5.5	1.1	5189	chr3R	5338417	intron	mtd -	chr3R	5341012	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-727
1703	chr3R	5445959	5445994	chr3R	5452419	5452454	Burdock	21	6459	3.0	2.5	2.8	5.5	6495	chr3R	5445959	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452454	intron	CG14669 +	chr3R_21_5445001	chr3R_5445001	RAL-727
1707	chr3R	5746020	5746044	chr3R	5746261	5746262	pogo	6	236	5.5	6.0	5.8	0.9	242	chr3R	5746020	3` UTR	Madm +	chr3R	5746141	3` UTR	Madm +	chr3R	5746262	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-727
1708	chr3R	5747013	5747049	chr3R	5753204	5753240	diver	19	6190	4.0	4.5	4.2	3.7	6227	chr3R	5747013	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753240	intergenic	CG2091 -	chr3R_19_5750001	chr3R_5750001	RAL-727
1710	chr3R	5809115	5809140	chr3R	5809365	5809389	pogo	6	249	4.0	4.5	4.2	1.2	274	chr3R	5809115	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809389	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	RAL-727
1711	chr3R	5822381	5822404	chr3R	5823548	5823571	1360	13	1167	5.0	7.0	6.0	1.9	1190	chr3R	5822381	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_13_5820001	chr3R_5820001	RAL-727
1712	chr3R	5927563	5927582	chr3R	5927801	5927820	pogo	13	237	3.0	7.5	5.2	2.1	257	chr3R	5927563	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927820	intron	CG34113 -	chr3R_13_5925001	chr3R_5925001	RAL-727
1714	chr3R	6015960	6015995	chr3R	6024441	6024476	Tirant	11	8476	2.5	3.5	3.0	2.8	8516	chr3R	6015960	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_11_6020001	chr3R_6020001	RAL-727
1716	chr3R	6121168	6121185	chr3R	6121381	6121403	BS	9	217	0.0	4.5	2.2	2.8	235	chr3R	6121168	intergenic	not near genes	chr3R	6121286	intergenic	not near genes	chr3R	6121403	intergenic	not near genes	chr3R_9_6120001	chr3R_6120001	RAL-727
1718	chr3R	6158510	6158533	chr3R	6167092	6167098	Tirant	4	8578	4.5	4.5	4.5	0.7	8588	chr3R	6158510	intergenic	not near genes	chr3R	6162804	intergenic	not near genes	chr3R	6167098	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	RAL-727
1720	chr3R	6175172	6175207	chr3R	6182444	6182463	HMS-Beagle2	14	7270	3.0	4.0	3.5	3.1	7291	chr3R	6175172	intergenic	Osi1 +	chr3R	6178818	intron	CR45194 +	chr3R	6182463	intergenic	CR45194 +	chr3R_14_6175001	chr3R_6175001	RAL-727
1722	chr3R	6206296	6206320	chr3R	6206497	6206497	BS	10	207	3.0	6.5	4.8	1.7	201	chr3R	6206296	exon	Osi24 +	chr3R	6206396	intron	Osi24 +	chr3R	6206497	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	RAL-727
1728	chr3R	6510022	6510053	chr3R	6515103	6515134	jockey	9	5080	4.0	4.0	4.0	1.8	5112	chr3R	6510022	intergenic	not near genes	chr3R	6512578	intergenic	not near genes	chr3R	6515134	intergenic	not near genes	chr3R_9_6510001	chr3R_6510001	RAL-727
1735	chr3R	6737501	6737532	chr3R	6739288	6739302	Doc	13	1785	3.0	3.5	3.2	3.1	1801	chr3R	6737501	intron	pb -	chr3R	6738402	intron	pb -	chr3R	6739302	intron	pb -	chr3R_13_6735001	chr3R_6735001	RAL-727
1761	chr3R	7694575	7694610	chr3R	7713636	7713671	invader3	9	19061	2.0	6.0	4.0	1.8	19096	chr3R	7694575	3` UTR	Nlg1 +	chr3R	7704123	intergenic	not near genes	chr3R	7713671	intergenic	not near genes	chr3R_9_7700001	chr3R_7700001	RAL-727
1763	chr3R	7729464	7729492	chr3R	7737402	7737430	Stalker2	11	7937	3.0	5.5	4.2	2.1	7966	chr3R	7729464	intergenic	not near genes	chr3R	7733447	intergenic	not near genes	chr3R	7737430	intergenic	not near genes	chr3R_11_7730001	chr3R_7730001	RAL-727
1765	chr3R	7849642	7849678	chr3R	7850809	7850835	1360	23	1166	2.0	7.5	4.8	4.0	1193	chr3R	7849642	intron	CG34384 +	chr3R	7850238	intron	CG34384 +	chr3R	7850835	intron	CG34384 +	chr3R_23_7850001	chr3R_7850001	RAL-727
1766	chr3R	7973315	7973342	chr3R	7974377	7974404	1360	7	1062	5.5	4.5	5.0	1.2	1089	chr3R	7973315	intergenic	not near genes	chr3R	7973860	intergenic	not near genes	chr3R	7974404	intergenic	CD98hc -	chr3R_7_7970001	chr3R_7970001	RAL-727
1769	chr3R	8094415	8094441	chr3R	8099715	8099746	Transpac	9	5304	8.5	5.5	7.0	1.1	5331	chr3R	8094415	intron	CG7900 +	chr3R	8097080	intron	CG7900 +	chr3R	8099746	intron	CG7900 +	chr3R_9_8095001	chr3R_8095001	RAL-727
1770	chr3R	8101765	8101793	chr3R	8104849	8104876	G2	7	3081	1.0	5.0	3.0	1.8	3111	chr3R	8101765	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104876	3` UTR	CG7900 +	chr3R_7_8100001	chr3R_8100001	RAL-727
1772	chr3R	8207555	8207574	chr3R	8208399	8208410	F-element	4	842	7.5	4.5	6.0	0.6	855	chr3R	8207555	intergenic	not near genes	chr3R	8207982	intergenic	not near genes	chr3R	8208410	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RAL-727
1775	chr3R	8403023	8403038	chr3R	8412180	8412204	roo	7	9163	7.0	3.5	5.2	1.1	9181	chr3R	8403023	intron	CG45263 -	chr3R	8407614	intron	CG45263 -	chr3R	8412204	intron	CG45263 -	chr3R_7_8405001	chr3R_8405001	RAL-727
1778	chr3R	8570477	8570508	chr3R	8575113	8575129	HMS-Beagle	17	4634	6.0	5.5	5.8	2.5	4652	chr3R	8570477	intergenic	not near genes	chr3R	8572803	intergenic	not near genes	chr3R	8575129	intergenic	not near genes	chr3R_17_8570001	chr3R_8570001	RAL-727
1779	chr3R	8601772	8601797	chr3R	8610918	8610944	roo	8	9149	9.0	1.5	5.2	1.3	9172	chr3R	8601772	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610944	intron	5-HT2B +	chr3R_8_8605001	chr3R_8605001	RAL-727
1784	chr3R	8707363	8707383	chr3R	8709804	8709821	jockey	14	2440	5.5	3.5	4.5	2.5	2458	chr3R	8707363	intergenic	not near genes	chr3R	8708592	intergenic	not near genes	chr3R	8709821	intergenic	not near genes	chr3R_14_8705001	chr3R_8705001	RAL-727
1787	chr3R	8894870	8894905	chr3R	8896026	8896060	1360	15	1154	1.5	5.0	3.2	3.6	1190	chr3R	8894870	intron	pyd -	chr3R	8895465	intron	pyd -	chr3R	8896060	intron	pyd -	chr3R_15_8895001	chr3R_8895001	RAL-727
1793	chr3R	9278783	9278808	chr3R	9284043	9284067	Rt1a	12	5259	5.0	9.5	7.2	1.5	5284	chr3R	9278783	intergenic	not near genes	chr3R	9281425	intergenic	not near genes	chr3R	9284067	intergenic	not near genes	chr3R_12_9280001	chr3R_9280001	RAL-727
1794	chr3R	9304538	9304550	chr3R	9311815	9311826	Stalker4	5	7278	14.0	4.5	9.2	0.5	7288	chr3R	9304538	intron	CG8861 -	chr3R	9308182	intron	CG8861 -	chr3R	9311826	intron	CG8861 -	chr3R_5_9305001	chr3R_9305001	RAL-727
1795	chr3R	9319582	9319609	chr3R	9320017	9320044	jockey	20	434	4.5	10.0	7.2	2.4	462	chr3R	9319582	intron	CG8861 -	chr3R	9319813	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_20_9315001	chr3R_9315001	RAL-727
1798	chr3R	9361821	9361843	chr3R	9362062	9362084	pogo	11	241	3.0	7.0	5.0	1.8	263	chr3R	9361821	3` UTR	CG45050 +	chr3R	9361952	3` UTR	CG45050 +	chr3R	9362084	3` UTR	CG45050 +	chr3R_11_9360001	chr3R_9360001	RAL-727
1809	chr3R	10231782	10231815	chr3R	10237359	10237392	mdg3	11	5574	3.0	5.5	4.2	2.1	5610	chr3R	10231782	intron	CG42795 +	chr3R	10234587	intron	CG42795 +	chr3R	10237392	intron	CG42795 +	chr3R_11_10230001	chr3R_10230001	RAL-727
1810	chr3R	10255374	10255386	chr3R	10260813	10260826	I-element	10	5438	7.5	4.0	5.8	1.5	5452	chr3R	10255374	3` UTR	Sirt6 -	chr3R	10258100	intron	Sirt6 -	chr3R	10260826	exon	Sirt6 -	chr3R_10_10255001	chr3R_10255001	RAL-727
1830	chr3R	11065587	11065611	chr3R	11071241	11071265	297	5	5653	2.5	2.5	2.5	1.4	5678	chr3R	11065587	intergenic	not near genes	chr3R	11068426	intergenic	not near genes	chr3R	11071265	intergenic	not near genes	chr3R_5_11065001	chr3R_11065001	RAL-727
1837	chr3R	11379243	11379269	chr3R	11388398	11388418	roo	14	9154	5.0	1.5	3.2	3.3	9175	chr3R	11379243	intron	pros +	chr3R	11383830	intron	pros +	chr3R	11388418	intron	pros +	chr3R_14_11380001	chr3R_11380001	RAL-727
1847	chr3R	11841061	11841092	chr3R	11846252	11846273	BS	8	5186	3.5	4.5	4.0	1.6	5212	chr3R	11841061	intron	CG6959 -	chr3R	11843667	intron	CG6959 -	chr3R	11846273	intron	CG6959 -	chr3R_8_11840001	chr3R_11840001	RAL-727
1851	chr3R	12022885	12022910	chr3R	12025062	12025087	pogo	19	2176	5.0	9.5	7.2	2.3	2202	chr3R	12022885	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025087	intergenic	not near genes	chr3R_19_12020001	chr3R_12020001	RAL-727
1866	chr3R	12864562	12864578	chr3R	12865047	12865063	roo	4	482	1.5	0.5	1.0	2.0	501	chr3R	12864562	intergenic	not near genes	chr3R	12864812	intergenic	not near genes	chr3R	12865063	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-727
1874	chr3R	13143035	13143066	chr3R	13148610	13148613	mdg3	9	5573	2.5	4.0	3.2	2.1	5578	chr3R	13143035	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145824	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148613	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RAL-727
1906	chr3R	14021648	14021680	chr3R	14023464	14023497	S-element	21	1815	5.5	5.0	5.2	3.4	1849	chr3R	14021648	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023497	intron	rdx -	chr3R_21_14020001	chr3R_14020001	RAL-727
1913	chr3R	14180831	14180836	chr3R	14185575	14185601	F-element	4	4760	2.5	5.0	3.8	0.8	4770	chr3R	14180831	intron	Dop1R1 -	chr3R	14183216	intron	Dop1R1 -	chr3R	14185601	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	RAL-727
1924	chr3R	15041424	15041460	chr3R	15045192	15045228	Doc	15	3768	4.0	2.5	3.2	3.6	3804	chr3R	15041424	intergenic	not near genes	chr3R	15043326	intergenic	not near genes	chr3R	15045228	intergenic	not near genes	chr3R_15_15040001	chr3R_15040001	RAL-727
1926	chr3R	15079806	15079837	chr3R	15080047	15080078	pogo	18	241	3.5	1.0	2.2	5.6	272	chr3R	15079806	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080078	3` UTR	CG6966 -	chr3R_18_15075001	chr3R_15075001	RAL-727
1927	chr3R	15132062	15132081	chr3R	15135116	15135141	Juan	12	3059	6.0	8.5	7.2	1.5	3079	chr3R	15132062	intergenic	CG42788 -	chr3R	15133602	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_12_15130001	chr3R_15130001	RAL-727
1929	chr3R	15162548	15162553	chr3R	15167316	15167320	F-element	4	4768	11.0	1.0	6.0	0.6	4772	chr3R	15162548	intron	Gyc88E +	chr3R	15164934	intron	Gyc88E +	chr3R	15167320	intron	Gyc88E +	chr3R_4_15160001	chr3R_15160001	RAL-727
1930	chr3R	15162554	15162563	chr3R	15167308	15167329	F-element	8	4764	7.0	0.0	3.5	1.8	4775	chr3R	15162554	intron	Gyc88E +	chr3R	15164942	intron	Gyc88E +	chr3R	15167329	intron	Gyc88E +	chr3R_8_15160001	chr3R_15160001	RAL-727
1936	chr3R	15601163	15601196	chr3R	15608685	15608718	412	29	7518	6.0	6.5	6.2	4.0	7555	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_29_15600001	chr3R_15600001	RAL-727
1937	chr3R	15618729	15618756	chr3R	15626203	15626230	blood	14	7473	6.0	3.0	4.5	2.5	7501	chr3R	15618729	intergenic	not near genes	chr3R	15622480	intergenic	not near genes	chr3R	15626230	intergenic	not near genes	chr3R_14_15620001	chr3R_15620001	RAL-727
1944	chr3R	16189408	16189442	chr3R	16189811	16189845	invader4	20	403	2.5	0.5	1.5	8.0	437	chr3R	16189408	intron	sra +	chr3R	16189626	intron	sra +	chr3R	16189845	intron	sra +	chr3R_20_16185001	chr3R_16185001	RAL-727
1954	chr3R	16756318	16756344	chr3R	16762508	16762522	diver	9	6189	3.5	1.5	2.5	2.6	6204	chr3R	16756318	intron	bxd -	chr3R	16759420	intron	bxd -	chr3R	16762522	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-727
1974	chr3R	17591286	17591322	chr3R	17591720	17591735	F-element	7	431	7.0	4.0	5.5	1.1	449	chr3R	17591286	intergenic	not near genes	chr3R	17591510	intergenic	not near genes	chr3R	17591735	intergenic	not near genes	chr3R_7_17590001	chr3R_17590001	RAL-727
1976	chr3R	17638316	17638349	chr3R	17638802	17638835	roo	21	485	6.0	6.0	6.0	3.0	519	chr3R	17638316	intron	CG43175 +	chr3R	17638576	intron	CG43175 +	chr3R	17638835	intron,intron	CG43175 +,CR45222 +	chr3R_21_17635001	chr3R_17635001	RAL-727
1978	chr3R	17657653	17657659	chr3R	17657804	17657810	INE-1	4	151	1.0	6.0	3.5	0.9	157	chr3R	17657653	intron	CG14322 +	chr3R	17657732	intron	CG14322 +	chr3R	17657810	intron	CG14322 +	chr3R_4_17655001	chr3R_17655001	RAL-727
1984	chr3R	17925868	17925877	chr3R	17927325	17927344	hobo	4	1461	7.0	11.5	9.2	0.4	1476	chr3R	17925868	intron	cpo +	chr3R	17926606	intron	cpo +	chr3R	17927344	intron	cpo +	chr3R_4_17925001	chr3R_17925001	RAL-727
1985	chr3R	17925880	17925888	chr3R	17927320	17927355	hobo	4	1460	6.0	9.5	7.8	0.5	1475	chr3R	17925880	intron	cpo +	chr3R	17926618	intron	cpo +	chr3R	17927355	intron	cpo +	chr3R_4_17925001	chr3R_17925001	RAL-727
1986	chr3R	18032796	18032806	chr3R	18040466	18040476	opus	6	7670	0.0	1.0	0.5	4.0	7680	chr3R	18032796	intergenic	not near genes	chr3R	18036636	intergenic	not near genes	chr3R	18040476	intergenic	not near genes	chr3R_6_18035001	chr3R_18035001	RAL-727
1988	chr3R	18061581	18061612	chr3R	18063149	18063180	F-element	14	1568	4.5	3.0	3.8	2.9	1599	chr3R	18061581	intergenic	not near genes	chr3R	18062380	intergenic	not near genes	chr3R	18063180	intergenic	not near genes	chr3R_14_18060001	chr3R_18060001	RAL-727
1996	chr3R	18331782	18331792	chr3R	18333275	18333280	hopper2	6	1493	5.5	5.0	5.2	1.0	1498	chr3R	18331782	3` UTR	CG15803 -	chr3R	18332531	intron	CG15803 -	chr3R	18333280	3` UTR	CG15803 -	chr3R_6_18330001	chr3R_18330001	RAL-727
2000	chr3R	18606502	18606520	chr3R	18610734	18610752	F-element	6	4232	7.5	7.5	7.5	0.7	4250	chr3R	18606502	intron,intron	qin +,CG14304 -	chr3R	18608627	intron,intron	qin +,CG14304 -	chr3R	18610752	intron,intron	qin +,CG14304 -	chr3R_6_18605001	chr3R_18605001	RAL-727
2037	chr3R	20109539	20109571	chr3R	20114745	20114777	copia	16	5206	1.0	4.0	2.5	4.6	5238	chr3R	20109539	intergenic	not near genes	chr3R	20112158	intergenic	not near genes	chr3R	20114777	intergenic	CG10887 +	chr3R_16_20110001	chr3R_20110001	RAL-727
2038	chr3R	20156704	20156723	chr3R	20165858	20165893	roo	17	9167	6.5	7.0	6.8	2.2	9189	chr3R	20156704	intergenic	not near genes	chr3R	20161298	intergenic	not near genes	chr3R	20165893	intergenic	not near genes	chr3R_17_20160001	chr3R_20160001	RAL-727
2043	chr3R	20245275	20245301	chr3R	20248886	20248912	F-element	7	3611	0.5	1.5	1.0	3.5	3637	chr3R	20245275	3` UTR	Nlg4 +	chr3R	20247094	intergenic	not near genes	chr3R	20248912	intergenic	not near genes	chr3R_7_20245001	chr3R_20245001	RAL-727
2046	chr3R	20266525	20266549	chr3R	20272986	20273020	Burdock	14	6468	4.5	5.5	5.0	2.3	6495	chr3R	20266525	intron	cic +	chr3R	20269772	intron	cic +	chr3R	20273020	intron	cic +	chr3R_14_20265001	chr3R_20265001	RAL-727
2048	chr3R	20330999	20331032	chr3R	20331485	20331518	roo	15	485	4.0	3.5	3.8	3.1	519	chr3R	20330999	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331518	intergenic	not near genes	chr3R_15_20330001	chr3R_20330001	RAL-727
2054	chr3R	20513009	20513035	chr3R	20515712	20515738	opus	6	2703	5.5	4.5	5.0	1.0	2729	chr3R	20513009	intergenic	not near genes	chr3R	20514374	intergenic	not near genes	chr3R	20515738	intergenic	not near genes	chr3R_6_20510001	chr3R_20510001	RAL-727
2073	chr3R	21141679	21141704	chr3R	21150160	21150169	Tirant	11	8473	4.5	8.0	6.2	1.5	8490	chr3R	21141679	intron	SNF4Agamma +	chr3R	21145924	intron	SNF4Agamma +	chr3R	21150169	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	RAL-727
2085	chr3R	21761120	21761151	chr3R	21768511	21768534	mdg1	9	7389	4.0	4.0	4.0	1.8	7414	chr3R	21761120	exon	CG42335 +	chr3R	21764827	intron	CG42335 +	chr3R	21768534	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RAL-727
2098	chr3R	22234685	22234715	chr3R	22236004	22236034	pogo	23	1317	2.5	4.5	3.5	5.1	1349	chr3R	22234685	intron	SKIP +	chr3R	22235360	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_23_22235001	chr3R_22235001	RAL-727
2099	chr3R	22239490	22239524	chr3R	22248549	22248584	roo	13	9059	6.0	4.0	5.0	2.2	9094	chr3R	22239490	intron	SKIP +	chr3R	22244037	intron	SKIP +	chr3R	22248584	intron	SKIP +	chr3R_13_22240001	chr3R_22240001	RAL-727
2101	chr3R	22450541	22450570	chr3R	22453181	22453210	NOF	14	2636	4.5	6.0	5.2	2.3	2669	chr3R	22450541	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453210	intron	CG34376 +	chr3R_14_22450001	chr3R_22450001	RAL-727
2112	chr3R	22881190	22881230	chr3R	22884896	22884925	Doc	5	3702	1.0	0.5	0.8	2.8	3735	chr3R	22881190	intergenic	not near genes	chr3R	22883058	intergenic	not near genes	chr3R	22884925	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	RAL-727
2125	chr3R	23558398	23558428	chr3R	23560179	23560209	Bari1	7	1781	1.0	4.5	2.8	1.8	1811	chr3R	23558398	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560209	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-727
2127	chr3R	23684709	23684730	chr3R	23685181	23685195	roo	8	474	1.5	5.0	3.2	1.9	486	chr3R	23684709	intron	CG18754 +	chr3R	23684952	intron	CG18754 +	chr3R	23685195	exon	CG18754 +	chr3R_8_23680001	chr3R_23680001	RAL-727
2130	chr3R	23835408	23835436	chr3R	23844557	23844586	roo	18	9150	6.0	11.0	8.5	1.9	9178	chr3R	23835408	intron	CG34355 +	chr3R	23839997	intron	CG34355 +	chr3R	23844586	intron	CG34355 +	chr3R_18_23835001	chr3R_23835001	RAL-727
2135	chr3R	24072085	24072118	chr3R	24072523	24072527	jockey	13	432	7.5	0.0	3.8	2.7	442	chr3R	24072085	intron	4EHP -	chr3R	24072306	intron	4EHP -	chr3R	24072527	intron	4EHP -	chr3R_13_24070001	chr3R_24070001	RAL-727
2136	chr3R	24076919	24076948	chr3R	24078386	24078412	hobo	4	1466	4.0	5.0	4.5	0.7	1493	chr3R	24076919	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078412	intron	4EHP -	chr3R_4_24075001	chr3R_24075001	RAL-727
2138	chr3R	24207223	24207246	chr3R	24212299	24212322	flea	12	5075	5.5	12.5	9.0	1.2	5099	chr3R	24207223	intron	twin -	chr3R	24209772	intron	twin -	chr3R	24212322	intron	twin -	chr3R_12_24205001	chr3R_24205001	RAL-727
2142	chr3R	24493272	24493310	chr3R	24493501	24493539	BS	16	228	4.5	7.5	6.0	2.3	267	chr3R	24493272	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493539	intergenic	not near genes	chr3R_16_24490001	chr3R_24490001	RAL-727
2145	chr3R	24729879	24729907	chr3R	24732677	24732708	Doc	16	2800	4.0	4.0	4.0	3.2	2829	chr3R	24729879	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732708	intron	tok +	chr3R_16_24730001	chr3R_24730001	RAL-727
2170	chr3R	25725829	25725857	chr3R	25734989	25735017	roo	6	9160	2.5	4.0	3.2	1.4	9188	chr3R	25725829	intron	LpR2 -	chr3R	25730423	intron	LpR2 -	chr3R	25735017	intron	LpR2 -	chr3R_6_25730001	chr3R_25730001	RAL-727
2172	chr3R	25832695	25832722	chr3R	25841871	25841904	roo	9	9179	3.0	5.5	4.2	1.7	9209	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841904	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-727
2186	chr3R	26376327	26376358	chr3R	26385487	26385496	roo	5	9149	2.5	3.5	3.0	1.2	9169	chr3R	26376327	intergenic	not near genes	chr3R	26380912	intergenic	not near genes	chr3R	26385496	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-727
2190	chr3R	26558326	26558359	chr3R	26565639	26565646	Stalker4	9	7308	4.5	4.5	4.5	1.6	7320	chr3R	26558326	intron	scrib +	chr3R	26561986	intron	scrib +	chr3R	26565646	intron	scrib +	chr3R_9_26560001	chr3R_26560001	RAL-727
2195	chr3R	26642730	26642759	chr3R	26643123	26643152	jockey	15	393	8.0	4.0	6.0	2.1	422	chr3R	26642730	intergenic	not near genes	chr3R	26642941	intergenic	not near genes	chr3R	26643152	intergenic	not near genes	chr3R_15_26640001	chr3R_26640001	RAL-727
2200	chr3R	26810553	26810586	chr3R	26811038	26811071	roo	16	484	5.0	8.0	6.5	2.1	518	chr3R	26810553	intron	Tl +	chr3R	26810812	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_16_26810001	chr3R_26810001	RAL-727
2203	chr3R	27007408	27007431	chr3R	27016543	27016566	roo	11	9135	7.5	4.0	5.8	1.6	9158	chr3R	27007408	intron	RYa-R +	chr3R	27011987	intron	RYa-R +	chr3R	27016566	intron	RYa-R +	chr3R_11_27010001	chr3R_27010001	RAL-727
2211	chr3R	27140518	27140548	chr3R	27148125	27148158	412	24	7608	8.5	5.5	7.0	3.0	7640	chr3R	27140518	intron	CG6051 -	chr3R	27144338	intron	CG6051 -	chr3R	27148158	intron	CG6051 -	chr3R_24_27140001	chr3R_27140001	RAL-727
2215	chr3R	27342792	27342825	chr3R	27351373	27351384	Tirant	17	8579	3.5	6.5	5.0	2.8	8592	chr3R	27342792	intron	CG42534 +	chr3R	27347088	intron	CG42534 +	chr3R	27351384	intron	CG42534 +	chr3R_17_27345001	chr3R_27345001	RAL-727
2223	chr3R	27521158	27521187	chr3R	27530367	27530396	roo	8	9207	1.5	3.0	2.2	2.5	9238	chr3R	27521158	intron	CG12885 +	chr3R	27525777	intron	CG12885 +	chr3R	27530396	intron	CG12885 +	chr3R_8_27525001	chr3R_27525001	RAL-727
2226	chr3R	27725574	27725593	chr3R	27731015	27731035	I-element	7	5442	2.0	6.0	4.0	1.4	5461	chr3R	27725574	intergenic	not near genes	chr3R	27728304	intergenic	not near genes	chr3R	27731035	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-727
2229	chr3R	27856761	27856791	chr3R	27858243	27858257	hopper2	15	1479	7.5	6.0	6.8	1.9	1496	chr3R	27856761	intron	CG34353 -	chr3R	27857509	intron	CG34353 -	chr3R	27858257	intron	CG34353 -	chr3R_15_27855001	chr3R_27855001	RAL-727
2231	chr3R	27862955	27862984	chr3R	27868259	27868284	Transpac	11	5302	5.0	6.0	5.5	1.7	5329	chr3R	27862955	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868284	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	RAL-727
2232	chr3R	27875699	27875733	chr3R	27882753	27882779	297	20	7054	3.0	7.0	5.0	3.3	7080	chr3R	27875699	intron	CG34353 -	chr3R	27879239	intron	CG34353 -	chr3R	27882779	intron	CG34353 -	chr3R_20_27875001	chr3R_27875001	RAL-727
2233	chr3R	28068495	28068520	chr3R	28073937	28073962	I-element	7	5440	5.0	4.5	4.8	1.2	5467	chr3R	28068495	intron	CG34362 +	chr3R	28071228	intron	CG34362 +	chr3R	28073962	intron	CG34362 +	chr3R_7_28070001	chr3R_28070001	RAL-727
2234	chr3R	28173676	28173704	chr3R	28181106	28181134	mdg1	13	7430	4.0	5.5	4.8	2.2	7458	chr3R	28173676	intron	CG34354 +	chr3R	28177405	intron	CG34354 +	chr3R	28181134	intron	CG34354 +	chr3R_13_28175001	chr3R_28175001	RAL-727
2237	chr3R	28253345	28253373	chr3R	28255847	28255862	jockey	14	2504	3.0	5.0	4.0	2.8	2517	chr3R	28253345	intergenic	not near genes	chr3R	28254604	intergenic	not near genes	chr3R	28255862	intergenic	not near genes	chr3R_14_28250001	chr3R_28250001	RAL-727
2248	chr3R	28758283	28758304	chr3R	28763900	28763921	roo	11	5615	7.5	0.0	3.8	2.3	5638	chr3R	28758283	intergenic	aqrs -	chr3R	28761102	intergenic	not near genes	chr3R	28763921	intergenic	not near genes	chr3R_11_28760001	chr3R_28760001	RAL-727
2249	chr3R	28792880	28792899	chr3R	28797962	28797994	jockey	7	5090	0.5	4.5	2.5	2.0	5114	chr3R	28792880	intergenic	not near genes	chr3R	28795437	intergenic	not near genes	chr3R	28797994	intergenic	not near genes	chr3R_7_28795001	chr3R_28795001	RAL-727
2260	chr3R	29079398	29079409	chr3R	29080770	29080781	NOF	10	1372	1.0	3.5	2.2	3.1	1383	chr3R	29079398	intron	CG11873 +	chr3R	29080090	intron	CG11873 +	chr3R	29080781	intron	CG11873 +	chr3R_10_29080001	chr3R_29080001	RAL-727
2265	chr3R	29319822	29319856	chr3R	29320141	29320175	jockey	10	318	3.0	6.0	4.5	1.8	353	chr3R	29319822	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320175	intergenic	not near genes	chr3R_10_29315001	chr3R_29315001	RAL-727
2267	chr3R	29406622	29406640	chr3R	29407900	29407926	jockey	5	1284	6.0	1.5	3.8	1.0	1304	chr3R	29406622	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407926	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-727
2275	chr3R	29738273	29738296	chr3R	29739730	29739746	hobo	15	1463	4.5	2.0	3.2	3.6	1473	chr3R	29738273	intergenic	CG1969 +,CG7598 +	chr3R	29739010	intron	CG1969 +	chr3R	29739746	5` UTR	CG1969 +	chr3R_15_29735001	chr3R_29735001	RAL-727
2278	chr3R	29760373	29760392	chr3R	29761567	29761593	pogo	13	1199	3.0	9.5	6.2	1.8	1220	chr3R	29760373	intergenic	not near genes	chr3R	29760983	intergenic	not near genes	chr3R	29761593	intergenic	not near genes	chr3R_13_29760001	chr3R_29760001	RAL-727
2282	chr3R	29882017	29882052	chr3R	29891174	29891209	roo	17	9156	6.5	6.0	6.2	2.4	9192	chr3R	29882017	intron	CG31038 +	chr3R	29886613	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_17_29885001	chr3R_29885001	RAL-727
2286	chr3R	30084849	30084884	chr3R	30086316	30086351	hobo	18	1465	1.5	5.0	3.2	4.3	1502	chr3R	30084849	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086351	intron	sima +	chr3R_18_30085001	chr3R_30085001	RAL-727
2291	chr3R	30238760	30238796	chr3R	30239924	30239960	1360	6	1164	3.0	0.0	1.5	2.4	1200	chr3R	30238760	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239960	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-727
2295	chr3R	30317326	30317355	chr3R	30324918	30324943	roo	11	7589	2.5	6.5	4.5	2.0	7617	chr3R	30317326	intron	hdc +	chr3R	30321134	intron	hdc +	chr3R	30324943	intron	hdc +	chr3R_11_30320001	chr3R_30320001	RAL-727
2299	chr3R	30375554	30375570	chr3R	30383177	30383193	412	7	7623	2.5	5.0	3.8	1.5	7639	chr3R	30375554	intergenic	not near genes	chr3R	30379374	intergenic	not near genes	chr3R	30383193	intergenic	not near genes	chr3R_7_30375001	chr3R_30375001	RAL-727
2300	chr3R	30396216	30396247	chr3R	30404482	30404513	roo	16	8266	5.5	6.0	5.8	2.4	8297	chr3R	30396216	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404513	5` UTR	CR45570 +	chr3R_16_30400001	chr3R_30400001	RAL-727
2304	chr3R	30480481	30480507	chr3R	30482949	30482975	jockey	7	2464	4.0	5.5	4.8	1.2	2494	chr3R	30480481	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482975	intron	PH4alphaEFB +	chr3R_7_30480001	chr3R_30480001	RAL-727
2311	chr3R	30679517	30679549	chr3R	30686986	30687018	blood	11	7468	1.5	3.5	2.5	3.1	7501	chr3R	30679517	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687018	intergenic	not near genes	chr3R_11_30680001	chr3R_30680001	RAL-727
2314	chr3R	30818811	30818845	chr3R	30820376	30820410	1360	15	1564	2.0	9.0	5.5	2.3	1599	chr3R	30818811	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820410	intron	cindr +	chr3R_15_30815001	chr3R_30815001	RAL-727
2321	chr3R	31074229	31074260	chr3R	31081827	31081857	springer	13	7597	5.0	3.5	4.2	2.5	7628	chr3R	31074229	intron	Sox100B +	chr3R	31078043	intron	Sox100B +	chr3R	31081857	intron	Sox100B +	chr3R_13_31075001	chr3R_31075001	RAL-727
2324	chr3R	31279387	31279402	chr3R	31285565	31285593	diver	11	6185	7.0	3.5	5.2	1.8	6206	chr3R	31279387	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285593	intergenic	not near genes	chr3R_11_31280001	chr3R_31280001	RAL-727
2328	chr3R	31413087	31413119	chr3R	31418287	31418314	copia	20	5198	3.5	0.5	2.0	6.7	5227	chr3R	31413087	intron	Gprk2 +	chr3R	31415700	intron	Gprk2 +	chr3R	31418314	intron	Gprk2 +	chr3R_20_31415001	chr3R_31415001	RAL-727
2329	chr3R	31412145	31412154	chr3R	31419856	31419865	copia	4	7711	12.0	13.5	12.8	0.3	7720	chr3R	31412145	intron	Gprk2 +	chr3R	31416005	intron	Gprk2 +	chr3R	31419865	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-727
2335	chr3R	31691530	31691561	chr3R	31696296	31696327	Doc	13	4762	5.5	7.5	6.5	1.7	4797	chr3R	31691530	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696327	intergenic	not near genes	chr3R_13_31690001	chr3R_31690001	RAL-727
2341	chr3R	31997990	31998025	chr3R	32005460	32005495	blood	17	7469	5.0	5.0	5.0	2.8	7505	chr3R	31997990	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005495	intron	heph -	chr3R_17_32000001	chr3R_32000001	RAL-727
2342	chr4	319987	320006	chr4	328163	328182	Stalker2	7	8176	7.5	5.0	6.2	1.0	8195	chr4	319987	3` UTR	CG32850 +	chr4	324084	intron	CG32850 +	chr4	328182	3` UTR	CG32850 +	chr4_7_320001	chr4_320001	RAL-727
2343	chr4	671604	671636	chr4	680187	680219	Tirant	26	8580	8.0	7.5	7.8	3.0	8615	chr4	671604	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_26_675001	chr4_675001	RAL-727
2346	chrX	295859	295882	chrX	303479	303502	412	7	7619	3.5	6.5	5.0	1.2	7643	chrX	295859	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303502	intron	CG3777 +	chrX_7_295001	chrX_295001	RAL-727
2347	chrX	318471	318501	chrX	323557	323587	flea	11	5083	3.0	2.0	2.5	3.1	5116	chrX	318471	intron,intron	CG3777 +,CG32816 -	chrX	321029	intron,intron	CG3777 +,CG32816 -	chrX	323587	intron,intron	CG3777 +,CG32816 -	chrX_11_320001	chrX_320001	RAL-727
2348	chrX	428416	428450	chrX	434601	434631	3S18	15	6183	11.5	3.5	7.5	1.8	6215	chrX	428416	intron	CG32816 -	chrX	431524	intron	CG32816 -	chrX	434631	intron	CG32816 -	chrX_15_430001	chrX_430001	RAL-727
2353	chrX	551424	551453	chrX	558986	558989	412	6	7557	3.5	2.0	2.8	1.6	7565	chrX	551424	intron	Appl +	chrX	555206	intron	Appl +	chrX	558989	intron	Appl +	chrX_6_555001	chrX_555001	RAL-727
2364	chrX	812266	812300	chrX	817897	817928	297	11	5628	5.5	2.5	4.0	2.2	5662	chrX	812266	intron	CG43867 -	chrX	815097	intron	CG43867 -	chrX	817928	intron	CG43867 -	chrX_11_815001	chrX_815001	RAL-727
2365	chrX	827600	827631	chrX	835392	835423	roo	10	7792	6.0	7.5	6.8	1.3	7823	chrX	827600	intron	CG43867 -	chrX	831512	intron	CG43867 -	chrX	835423	intron	CG43867 -	chrX_10_830001	chrX_830001	RAL-727
2370	chrX	1357777	1357787	chrX	1367945	1367957	Doc	4	10170	10.0	6.5	8.2	0.4	10180	chrX	1357777	intergenic	png -	chrX	1362867	intergenic	not near genes	chrX	1367957	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-727
2371	chrX	1357789	1357805	chrX	1367941	1367975	Doc	8	10167	4.5	6.0	5.2	1.3	10186	chrX	1357789	intergenic	png -	chrX	1362882	intergenic	not near genes	chrX	1367975	intergenic	not near genes	chrX_8_1360001	chrX_1360001	RAL-727
2372	chrX	1518045	1518074	chrX	1523438	1523476	jockey	15	5396	5.0	10.0	7.5	1.8	5431	chrX	1518045	intergenic	inc +	chrX	1520760	intergenic	not near genes	chrX	1523476	intergenic	not near genes	chrX_15_1520001	chrX_1520001	RAL-727
2373	chrX	1627972	1627999	chrX	1635440	1635452	gtwin	7	7464	2.5	3.0	2.8	1.8	7480	chrX	1627972	intron,intron	Mur2B -,br +	chrX	1631712	intron,intron	Mur2B -,br +	chrX	1635452	intron,intron	Mur2B -,br +	chrX_7_1630001	chrX_1630001	RAL-727
2375	chrX	1930535	1930570	chrX	1938106	1938141	opus	14	7568	1.5	4.5	3.0	3.5	7606	chrX	1930535	intergenic	CG11596 +	chrX	1934338	intergenic	not near genes	chrX	1938141	3` UTR	CG3857 -	chrX_14_1930001	chrX_1930001	RAL-727
2377	chrX	2399837	2399868	chrX	2408188	2408216	roo	7	8351	3.0	4.5	3.8	1.5	8379	chrX	2399837	intergenic	not near genes	chrX	2404026	intergenic	not near genes	chrX	2408216	intergenic	not near genes	chrX_7_2400001	chrX_2400001	RAL-727
2379	chrX	2610388	2610390	chrX	2617505	2617507	HMS-Beagle	4	7117	4.0	1.5	2.8	1.1	7119	chrX	2610388	intergenic	CG8636 -	chrX	2613948	intergenic	not near genes	chrX	2617507	intergenic	Tsp3A -	chrX_4_2610001	chrX_2610001	RAL-727
2380	chrX	2664384	2664416	chrX	2665530	2665562	1360	17	1143	6.5	4.0	5.2	2.7	1178	chrX	2664384	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665562	intron	sgg +	chrX_17_2660001	chrX_2660001	RAL-727
2381	chrX	2844910	2844931	chrX	2852320	2852341	mdg1	5	7410	3.5	5.5	4.5	0.9	7431	chrX	2844910	intron	kirre +	chrX	2848626	intron	kirre +	chrX	2852341	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-727
2385	chrX	3058020	3058049	chrX	3058261	3058290	pogo	8	241	4.5	4.0	4.2	1.5	270	chrX	3058020	intron	kirre +	chrX	3058155	intron	kirre +	chrX	3058290	intron	kirre +	chrX_8_3055001	chrX_3055001	RAL-727
2386	chrX	3075636	3075667	chrX	3080942	3080973	Transpac	7	5305	2.0	7.5	4.8	1.2	5337	chrX	3075636	intron	kirre +	chrX	3078304	intron	kirre +	chrX	3080973	intron	kirre +	chrX_7_3075001	chrX_3075001	RAL-727
2389	chrX	3218507	3218539	chrX	3227656	3227688	roo	4	9149	0.5	1.5	1.0	2.0	9181	chrX	3218507	intron	dnc +	chrX	3223098	intron	dnc +	chrX	3227688	intron	dnc +	chrX_4_3220001	chrX_3220001	RAL-727
2393	chrX	3415025	3415049	chrX	3421201	3421230	3S18	6	6182	3.0	2.5	2.8	1.6	6205	chrX	3415025	intron,intron	CR44999 +,CG12535 -	chrX	3418128	intron,intron	CR44999 +,CG12535 -	chrX	3421230	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-727
2394	chrX	3493089	3493120	chrX	3502248	3502279	roo	4	9159	3.0	0.5	1.8	1.4	9190	chrX	3493089	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502279	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-727
2396	chrX	3597549	3597584	chrX	3619717	3619752	roo	12	22167	5.0	2.0	3.5	2.7	22203	chrX	3597549	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619752	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	RAL-727
2399	chrX	3726764	3726797	chrX	3730160	3730194	NOF	13	3393	3.0	6.5	4.8	2.2	3430	chrX	3726764	intron	tlk +	chrX	3728479	intron	tlk +	chrX	3730194	intron	tlk +	chrX_13_3725001	chrX_3725001	RAL-727
2400	chrX	3842325	3842352	chrX	3842566	3842593	pogo	14	240	1.5	3.0	2.2	4.4	268	chrX	3842325	intron	ec +	chrX	3842459	intron	ec +	chrX	3842593	intron	ec +	chrX_14_3840001	chrX_3840001	RAL-727
2402	chrX	3986862	3986894	chrX	3994495	3994500	412	20	7631	7.5	0.0	3.8	4.2	7638	chrX	3986862	intergenic	not near genes	chrX	3990681	intergenic	not near genes	chrX	3994500	intergenic	not near genes	chrX_20_3990001	chrX_3990001	RAL-727
2407	chrX	4157894	4157925	chrX	4164928	4164960	297	10	7033	4.5	8.5	6.5	1.3	7066	chrX	4157894	intron	Fas2 -	chrX	4161427	intron	Fas2 -	chrX	4164960	intron	Fas2 -	chrX_10_4160001	chrX_4160001	RAL-727
2416	chrX	4700391	4700426	chrX	4700734	4700769	jockey	9	342	2.5	4.0	3.2	2.1	378	chrX	4700391	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700769	3` UTR	ctp +	chrX_9_4700001	chrX_4700001	RAL-727
2417	chrX	4731811	4731848	chrX	4736904	4736920	jockey	10	5088	6.0	3.0	4.5	1.8	5109	chrX	4731811	intergenic	not near genes	chrX	4734366	intergenic	not near genes	chrX	4736920	intergenic	not near genes	chrX_10_4730001	chrX_4730001	RAL-727
2418	chrX	4763256	4763285	chrX	4763744	4763773	Stalker4	9	485	5.5	5.0	5.2	1.5	517	chrX	4763256	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_9_4760001	chrX_4760001	RAL-727
2419	chrX	4792379	4792412	chrX	4792811	4792826	jockey	10	427	3.0	4.0	3.5	2.2	447	chrX	4792379	intergenic	not near genes	chrX	4792602	intergenic	not near genes	chrX	4792826	intergenic	not near genes	chrX_10_4790001	chrX_4790001	RAL-727
2421	chrX	4827974	4828000	chrX	4835345	4835370	Stalker4	7	7369	3.0	1.5	2.2	2.2	7396	chrX	4827974	intergenic	not near genes	chrX	4831672	intergenic	not near genes	chrX	4835370	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-727
2423	chrX	4990042	4990074	chrX	4997256	4997288	roo	17	7214	3.5	7.5	5.5	2.6	7246	chrX	4990042	intron	CR44833 -	chrX	4993665	intron	CR44833 -	chrX	4997288	intron	CR44833 -	chrX_17_4990001	chrX_4990001	RAL-727
2425	chrX	5096277	5096305	chrX	5103842	5103870	springer	6	7561	1.5	2.5	2.0	2.0	7593	chrX	5096277	intron,intron	CG15465 +,rg +	chrX	5100074	intron,intron	CG15465 +,rg +	chrX	5103870	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-727
2432	chrX	5524851	5524872	chrX	5528711	5528735	412	12	3863	1.5	3.0	2.2	3.8	3884	chrX	5524851	intergenic	snoRNA:Psi28S-3342 -	chrX	5526793	intergenic	not near genes	chrX	5528735	intergenic	Vsx2 -	chrX_12_5525001	chrX_5525001	RAL-727
2438	chrX	5883809	5883841	chrX	5884050	5884082	pogo	14	240	3.5	7.5	5.5	2.2	273	chrX	5883809	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884082	intron	CR45668 -	chrX_14_5880001	chrX_5880001	RAL-727
2439	chrX	5884160	5884190	chrX	5884401	5884431	pogo	16	239	7.5	4.5	6.0	2.3	271	chrX	5884160	intron	CR45668 -	chrX	5884296	intron	CR45668 -	chrX	5884431	intron	CR45668 -	chrX_16_5880001	chrX_5880001	RAL-727
2444	chrX	6171587	6171615	chrX	6179014	6179048	Quasimodo	6	7432	2.5	3.5	3.0	1.5	7461	chrX	6171587	intron	Ca-alpha1T -	chrX	6175318	intron	Ca-alpha1T -	chrX	6179048	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-727
2446	chrX	6335217	6335238	chrX	6337726	6337747	Tirant	7	2509	0.5	2.5	1.5	2.8	2530	chrX	6335217	intergenic	not near genes	chrX	6336482	intergenic	not near genes	chrX	6337747	intergenic	CG3842 +	chrX_7_6335001	chrX_6335001	RAL-727
2448	chrX	6392877	6392900	chrX	6397642	6397652	Doc	12	4763	3.0	10.5	6.8	1.5	4775	chrX	6392877	intergenic	not near genes	chrX	6395264	intergenic	not near genes	chrX	6397652	intergenic	not near genes	chrX_12_6395001	chrX_6395001	RAL-727
2450	chrX	6562821	6562851	chrX	6571303	6571332	Tirant	11	8479	3.5	3.0	3.2	2.6	8511	chrX	6562821	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571332	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-727
2451	chrX	6605480	6605487	chrX	6608502	6608509	Burdock	5	3022	5.0	8.0	6.5	0.7	3029	chrX	6605480	intron	pigs +	chrX	6606994	intron	pigs +	chrX	6608509	intron	pigs +	chrX_5_6605001	chrX_6605001	RAL-727
2452	chrX	6605489	6605507	chrX	6608498	6608529	Burdock	9	3021	0.5	5.5	3.0	2.2	3040	chrX	6605489	intron	pigs +	chrX	6607009	intron	pigs +	chrX	6608529	intron	pigs +	chrX_9_6605001	chrX_6605001	RAL-727
2460	chrX	7023600	7023626	chrX	7030990	7031012	Tabor	10	7388	6.5	4.5	5.5	1.5	7412	chrX	7023600	intron	CG12541 -	chrX	7027306	intron	CG12541 -	chrX	7031012	intron	CG12541 -	chrX_10_7025001	chrX_7025001	RAL-727
2461	chrX	7125245	7125273	chrX	7134404	7134417	roo	5	9156	5.5	5.5	5.5	0.8	9172	chrX	7125245	intergenic	not near genes	chrX	7129831	intergenic	not near genes	chrX	7134417	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-727
2467	chrX	7702896	7702937	chrX	7703335	7703359	jockey	31	437	11.0	4.0	7.5	3.6	463	chrX	7702896	intron	CHES-1-like -	chrX	7703128	intron	CHES-1-like -	chrX	7703359	intron	CHES-1-like -	chrX_31_7700001	chrX_7700001	RAL-727
2469	chrX	7784237	7784241	chrX	7784539	7784543	jockey	5	302	11.0	5.5	8.2	0.5	306	chrX	7784237	intergenic	not near genes	chrX	7784390	intergenic	not near genes	chrX	7784543	intergenic	not near genes	chrX_5_7780001	chrX_7780001	RAL-727
2472	chrX	8031430	8031457	chrX	8035739	8035766	Juan	12	4309	4.5	4.5	4.5	2.2	4336	chrX	8031430	intergenic	not near genes	chrX	8033598	intergenic	not near genes	chrX	8035766	3` UTR	CG2233 -	chrX_12_8030001	chrX_8030001	RAL-727
2484	chrX	8922337	8922357	chrX	8922762	8922791	jockey	10	426	6.0	3.5	4.8	1.7	454	chrX	8922337	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922791	intron	rdgA +	chrX_10_8920001	chrX_8920001	RAL-727
2485	chrX	8927581	8927610	chrX	8929850	8929880	NOF	12	2268	9.0	4.0	6.5	1.6	2299	chrX	8927581	intron	rdgA +	chrX	8928730	intron	rdgA +	chrX	8929880	intron	rdgA +	chrX_12_8925001	chrX_8925001	RAL-727
2486	chrX	8948759	8948792	chrX	8956269	8956302	roo	10	7509	1.0	3.0	2.0	3.3	7543	chrX	8948759	intron	rdgA +	chrX	8952530	intron	rdgA +	chrX	8956302	intron	rdgA +	chrX_10_8950001	chrX_8950001	RAL-727
2492	chrX	9508135	9508168	chrX	9509653	9509685	jockey	8	1518	2.0	3.5	2.8	2.1	1550	chrX	9508135	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-727
2493	chrX	9575791	9575824	chrX	9576113	9576143	mdg3	15	319	5.0	5.5	5.2	2.4	352	chrX	9575791	intron,exon	CG32699 -,CG42395 -	chrX	9575967	intron,intron	CG32699 -,CG42395 -	chrX	9576143	intron,5` UTR	CG32699 -,CG42395 -	chrX_15_9575001	chrX_9575001	RAL-727
2498	chrX	10138218	10138248	chrX	10145722	10145747	412	15	7502	6.5	5.0	5.8	2.2	7529	chrX	10138218	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145747	intron,intron	RhoU +,CR44894 -	chrX_15_10140001	chrX_10140001	RAL-727
2501	chrX	10267305	10267328	chrX	10276455	10276478	roo	4	9150	0.5	3.5	2.0	1.3	9173	chrX	10267305	3` UTR	alpha-Man-I -	chrX	10271892	intron	alpha-Man-I -	chrX	10276478	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	RAL-727
2504	chrX	10348801	10348828	chrX	10356365	10356387	springer	6	7562	4.0	3.5	3.8	1.2	7586	chrX	10348801	intergenic	snoRNA:U3:9B +	chrX	10352594	intergenic	not near genes	chrX	10356387	intergenic	l(1)G0289 -	chrX_6_10350001	chrX_10350001	RAL-727
2506	chrX	10550859	10550889	chrX	10552326	10552344	hobo	9	1464	4.0	1.5	2.8	2.4	1485	chrX	10550859	intron	spri -	chrX	10551602	intron	spri -	chrX	10552344	intron	spri -	chrX_9_10550001	chrX_10550001	RAL-727
2507	chrX	10686054	10686083	chrX	10691191	10691220	roo	10	5137	6.0	3.5	4.8	1.7	5166	chrX	10686054	intron	X11Lbeta +	chrX	10688637	intron	X11Lbeta +	chrX	10691220	intron	X11Lbeta +	chrX_10_10685001	chrX_10685001	RAL-727
2509	chrX	10772683	10772690	chrX	10772765	10772773	Tirant	4	82	4.0	4.0	4.0	0.8	90	chrX	10772683	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772773	intron	CG15211 +	chrX_4_10770001	chrX_10770001	RAL-727
2512	chrX	11095998	11096030	chrX	11103100	11103132	HMS-Beagle	6	7101	3.5	2.5	3.0	1.5	7134	chrX	11095998	intergenic	not near genes	chrX	11099565	intergenic	not near genes	chrX	11103132	intron	CG42249 +	chrX_6_11095001	chrX_11095001	RAL-727
2515	chrX	11312056	11312094	chrX	11319409	11319427	Stalker2	8	7343	1.5	2.5	2.0	2.7	7371	chrX	11312056	intergenic	not near genes	chrX	11315742	intergenic	not near genes	chrX	11319427	intergenic	not near genes	chrX_8_11315001	chrX_11315001	RAL-727
2517	chrX	11571461	11571484	chrX	11571698	11571721	pogo	12	237	4.5	8.0	6.2	1.7	260	chrX	11571461	3` UTR	Kmn1 -	chrX	11571591	3` UTR	Kmn1 -	chrX	11571721	3` UTR	Kmn1 -	chrX_12_11570001	chrX_11570001	RAL-727
2518	chrX	11633416	11633428	chrX	11640470	11640482	297	5	7054	9.0	2.5	5.8	0.7	7066	chrX	11633416	intron	Ptp10D +	chrX	11636949	intron	Ptp10D +	chrX	11640482	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-727
2519	chrX	11633431	11633449	chrX	11640469	11640503	297	8	7052	4.0	2.5	3.2	1.9	7072	chrX	11633431	intron	Ptp10D +	chrX	11636967	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_8_11635001	chrX_11635001	RAL-727
2527	chrX	12168133	12168157	chrX	12173575	12173598	I-element	4	5440	3.5	2.0	2.8	1.1	5465	chrX	12168133	intron	Ten-a +	chrX	12170866	intron	Ten-a +	chrX	12173598	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-727
2536	chrX	12930597	12930608	chrX	12937713	12937717	HMS-Beagle	6	7115	5.5	10.5	8.0	0.7	7120	chrX	12930597	intron	fne +	chrX	12934157	intron	fne +	chrX	12937717	intron	fne +	chrX_6_12930001	chrX_12930001	RAL-727
2546	chrX	13429469	13429496	chrX	13430617	13430625	jockey	11	1147	0.0	7.5	3.8	2.3	1156	chrX	13429469	intergenic	not near genes	chrX	13430047	intergenic	not near genes	chrX	13430625	intergenic	not near genes	chrX_11_13430001	chrX_13430001	RAL-727
2548	chrX	13463666	13463675	chrX	13469220	13469252	mdg3	6	5570	5.5	2.0	3.8	1.2	5586	chrX	13463666	intron	Neto +	chrX	13466459	intron	Neto +	chrX	13469252	intron	Neto +	chrX_6_13465001	chrX_13465001	RAL-727
2558	chrX	14105028	14105048	chrX	14114174	14114198	roo	6	9149	6.5	5.5	6.0	0.9	9170	chrX	14105028	intergenic	not near genes	chrX	14109613	intergenic	not near genes	chrX	14114198	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-727
2560	chrX	14157592	14157621	chrX	14163249	14163277	297	13	5656	3.5	2.5	3.0	3.2	5685	chrX	14157592	intergenic	not near genes	chrX	14160434	intergenic	not near genes	chrX	14163277	intergenic	not near genes	chrX_13_14160001	chrX_14160001	RAL-727
2563	chrX	14416307	14416340	chrX	14421074	14421107	F-element	10	4767	1.5	4.5	3.0	2.5	4800	chrX	14416307	intron	dpr8 +	chrX	14418707	intron	dpr8 +	chrX	14421107	intron	dpr8 +	chrX_10_14415001	chrX_14415001	RAL-727
2566	chrX	14589685	14589692	chrX	14589922	14589928	pogo	4	237	7.0	4.5	5.8	0.6	243	chrX	14589685	intron	CG9413 -	chrX	14589806	intron	CG9413 -	chrX	14589928	intron	CG9413 -	chrX_4_14585001	chrX_14585001	RAL-727
2567	chrX	14589693	14589708	chrX	14589919	14589945	pogo	10	234	2.5	3.5	3.0	2.5	252	chrX	14589693	intron	CG9413 -	chrX	14589819	intron	CG9413 -	chrX	14589945	intron	CG9413 -	chrX_10_14585001	chrX_14585001	RAL-727
2568	chrX	14636460	14636479	chrX	14641901	14641907	I-element	4	5438	9.5	7.0	8.2	0.4	5447	chrX	14636460	intron	NetA -	chrX	14639184	intron	NetA -	chrX	14641907	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-727
2571	chrX	14778027	14778058	chrX	14782824	14782855	Doc	7	4797	3.5	6.0	4.8	1.2	4828	chrX	14778027	intergenic	CG5347 +	chrX	14780441	intergenic	not near genes	chrX	14782855	intergenic	Ag5r2 -	chrX_7_14780001	chrX_14780001	RAL-727
2572	chrX	14818763	14818794	chrX	14823967	14823980	copia	7	5199	1.5	4.5	3.0	1.8	5217	chrX	14818763	intron	rut -	chrX	14821372	intron	rut -	chrX	14823980	intron	rut -	chrX_7_14820001	chrX_14820001	RAL-727
2574	chrX	14936858	14936890	chrX	14946115	14946147	roo	16	9257	5.0	4.5	4.8	2.8	9289	chrX	14936858	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946147	intron	pdgy -	chrX_16_14940001	chrX_14940001	RAL-727
2578	chrX	15273712	15273734	chrX	15274879	15274901	1360	5	1165	2.5	2.5	2.5	1.4	1189	chrX	15273712	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274901	intergenic	not near genes	chrX_5_15270001	chrX_15270001	RAL-727
2581	chrX	15413048	15413079	chrX	15417350	15417359	Juan	16	4298	7.0	5.0	6.0	2.3	4311	chrX	15413048	intron	Cngl -	chrX	15415204	intron	Cngl -	chrX	15417359	intron	Cngl -	chrX_16_15415001	chrX_15415001	RAL-727
2582	chrX	15435687	15435703	chrX	15436120	15436136	rover	9	433	0.0	12.0	6.0	1.3	449	chrX	15435687	intron	Cngl -	chrX	15435912	intron	Cngl -	chrX	15436136	intron	Cngl -	chrX_9_15435001	chrX_15435001	RAL-727
2594	chrX	16222775	16222805	chrX	16231125	16231155	roo	7	8350	3.5	2.5	3.0	1.8	8380	chrX	16222775	intergenic	not near genes	chrX	16226965	intergenic	not near genes	chrX	16231155	intergenic	not near genes	chrX_7_16225001	chrX_16225001	RAL-727
2597	chrX	16340675	16340701	chrX	16349832	16349858	roo	6	9157	2.0	5.5	3.8	1.2	9183	chrX	16340675	intergenic	Dsp1 +	chrX	16345266	intergenic	not near genes	chrX	16349858	intergenic	sl +	chrX_6_16345001	chrX_16345001	RAL-727
2601	chrX	16492649	16492679	chrX	16498226	16498256	mdg3	16	5577	6.5	5.5	6.0	2.3	5607	chrX	16492649	intron	para -	chrX	16495452	intron	para -	chrX	16498256	intron	para -	chrX_16_16495001	chrX_16495001	RAL-727
2608	chrX	17057935	17057963	chrX	17058176	17058204	pogo	9	241	1.0	5.5	3.2	2.1	269	chrX	17057935	intron	CG45002 -	chrX	17058070	intron	CG45002 -	chrX	17058204	intron	CG45002 -	chrX_9_17055001	chrX_17055001	RAL-727
2611	chrX	17195210	17195235	chrX	17200295	17200319	flea	5	5085	3.0	5.5	4.2	1.0	5109	chrX	17195210	3` UTR	baz +	chrX	17197764	3` UTR	baz +	chrX	17200319	3` UTR	baz +	chrX_5_17195001	chrX_17195001	RAL-727
2618	chrX	17431390	17431393	chrX	17431711	17431719	jockey	4	328	2.0	6.0	4.0	0.8	329	chrX	17431390	intron	CG12994 -	chrX	17431554	intron	CG12994 -	chrX	17431719	intron	CG12994 -	chrX_4_17430001	chrX_17430001	RAL-727
2621	chrX	17556947	17556961	chrX	17557443	17557454	mdg1	4	496	3.5	5.0	4.2	0.8	507	chrX	17556947	intron	CG43658 -	chrX	17557200	intron	CG43658 -	chrX	17557454	intron	CG43658 -	chrX_4_17555001	chrX_17555001	RAL-727
2623	chrX	17792957	17792983	chrX	17796248	17796280	flea	5	3296	2.0	2.0	2.0	1.7	3323	chrX	17792957	intron	OdsH +	chrX	17794618	intron	OdsH +	chrX	17796280	intron	OdsH +	chrX_5_17790001	chrX_17790001	RAL-727
2628	chrX	18429495	18429527	chrX	18434806	18434838	Transpac	10	5311	4.0	4.5	4.2	1.9	5343	chrX	18429495	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_10_18430001	chrX_18430001	RAL-727
2637	chrX	18957068	18957103	chrX	18965731	18965740	roo	12	8658	1.5	1.5	1.5	4.8	8672	chrX	18957068	intron	CG43759 +	chrX	18961404	intron	CG43759 +	chrX	18965740	intron	CG43759 +	chrX_12_18960001	chrX_18960001	RAL-727
2640	chrX	19060415	19060437	chrX	19065199	19065221	Doc	6	4784	6.5	5.0	5.8	0.9	4806	chrX	19060415	intron	CG14190 +	chrX	19062818	intron	CG14190 +	chrX	19065221	intron	CG14190 +	chrX_6_19060001	chrX_19060001	RAL-727
2642	chrX	19136552	19136585	chrX	19143472	19143504	412	8	6918	4.0	4.0	4.0	1.6	6952	chrX	19136552	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143504	3` UTR	RhoGAP18B -	chrX_8_19140001	chrX_19140001	RAL-727
2647	chrX	19356986	19357017	chrX	19358427	19358458	NOF	20	1441	7.5	1.0	4.2	3.8	1472	chrX	19356986	intron	kek5 +	chrX	19357722	intron	kek5 +	chrX	19358458	intron	kek5 +	chrX_20_19355001	chrX_19355001	RAL-727
2648	chrX	19380158	19380187	chrX	19380399	19380428	pogo	13	241	10.0	8.0	9.0	1.3	270	chrX	19380158	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380428	intron	kek5 +	chrX_13_19380001	chrX_19380001	RAL-727
2650	chrX	19472134	19472149	chrX	19472701	19472719	jockey	7	568	5.0	8.5	6.8	0.9	585	chrX	19472134	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472719	intergenic	not near genes	chrX_7_19470001	chrX_19470001	RAL-727
2659	chrX	19710077	19710089	chrX	19711863	19711870	S-element	8	1785	11.0	4.0	7.5	0.9	1793	chrX	19710077	intron	meso18E -	chrX	19710974	intron	meso18E -	chrX	19711870	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-727
2660	chrX	19710090	19710101	chrX	19711862	19711887	S-element	5	1780	6.5	4.0	5.2	0.8	1797	chrX	19710090	intron	meso18E -	chrX	19710988	intron	meso18E -	chrX	19711887	intron	meso18E -	chrX_5_19710001	chrX_19710001	RAL-727
2674	chrX	20377329	20377349	chrX	20378796	20378816	hobo	7	1467	1.5	8.0	4.8	1.2	1487	chrX	20377329	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_7_20375001	chrX_20375001	RAL-727
2679	chrX	20504138	20504158	chrX	20505651	20505679	transib2	5	1519	5.5	8.0	6.8	0.6	1541	chrX	20504138	intron	RhoGAP19D -	chrX	20504908	intron	RhoGAP19D -	chrX	20505679	intron	RhoGAP19D -	chrX_5_20500001	chrX_20500001	RAL-727
2687	chrX	20836728	20836758	chrX	20844330	20844360	roo	13	7600	1.5	4.5	3.0	3.2	7632	chrX	20836728	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844360	intron	shakB -	chrX_13_20840001	chrX_20840001	RAL-727
2689	chrX	20940717	20940753	chrX	20942186	20942222	hobo	15	1468	3.5	6.5	5.0	2.5	1505	chrX	20940717	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942222	intergenic	not near genes	chrX_15_20940001	chrX_20940001	RAL-727
2690	chrX	20956987	20957013	chrX	20962429	20962455	I-element	10	5442	5.0	5.0	5.0	1.7	5468	chrX	20956987	intergenic	not near genes	chrX	20959721	intergenic	not near genes	chrX	20962455	intergenic	Ser6 -	chrX_10_20955001	chrX_20955001	RAL-727
2697	chrX	21061865	21061886	chrX	21062350	21062371	roo	11	485	2.5	3.5	3.0	2.8	506	chrX	21061865	intron	bves +	chrX	21062118	intron	bves +	chrX	21062371	intron,3` UTR	bves +,CG32512 -	chrX_11_21060001	chrX_21060001	RAL-727
2698	chrX	21086129	21086164	chrX	21087157	21087192	jockey	14	1028	3.0	3.0	3.0	3.5	1063	chrX	21086129	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087192	intergenic	not near genes	chrX_14_21085001	chrX_21085001	RAL-727
2707	chrX	21458694	21458727	chrX	21464130	21464163	Ivk	18	5435	4.0	8.5	6.2	2.5	5469	chrX	21458694	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464163	intergenic	not near genes	chrX_18_21460001	chrX_21460001	RAL-727
2708	chrX	21474403	21474432	chrX	21474769	21474797	1731	13	364	4.0	2.5	3.2	3.1	394	chrX	21474403	intergenic	not near genes	chrX	21474600	intergenic	not near genes	chrX	21474797	intergenic	not near genes	chrX_13_21470001	chrX_21470001	RAL-727
2717	chrX	22564557	22564576	chrX	22575131	22575148	jockey	9	10572	20.0	9.5	14.8	0.6	10591	chrX	22564557	intergenic	not near genes	chrX	22569852	intergenic	not near genes	chrX	22575148	intergenic	not near genes	chrX_9_22565001	chrX_22565001	RAL-727
2721	chrX	22697496	22697505	chrX	22701791	22701802	Juan	4	4296	4.0	5.5	4.8	0.7	4306	chrX	22697496	intron	CR44997 +	chrX	22699649	intron	CR44997 +	chrX	22701802	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-727
2722	chrX	22697507	22697516	chrX	22701788	22701813	Juan	4	4292	5.5	4.5	5.0	0.7	4306	chrX	22697507	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701813	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-727
2724	chrX	22771505	22771537	chrX	22774796	22774825	297	13	3290	3.0	4.0	3.5	2.9	3320	chrX	22771505	intron	CR44997 +	chrX	22773165	intron	CR44997 +	chrX	22774825	intron	CR44997 +	chrX_13_22770001	chrX_22770001	RAL-727
2729	chrX	22967392	22967513	chrX	23154543	23154690	diver	5	187161	7.0	10.5	8.8	0.5	187298	chrX	22967392	intergenic	not near genes	chrX	23061041	intergenic	not near genes	chrX	23154690	intergenic	not near genes	chrX_5_23060001	chrX_23060001	RAL-727
2730	chrX	22987119	22987133	chrX	22989763	22989792	Burdock	6	2656	3.5	3.5	3.5	1.3	2673	chrX	22987119	intron,intron	stnA -,stnB -	chrX	22988456	intron,intron	stnA -,stnB -	chrX	22989792	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	RAL-727
2731	chrX	22996309	22996337	chrX	23003542	23003571	roo	13	7234	2.0	3.5	2.8	3.4	7262	chrX	22996309	intron,intron	stnA -,stnB -	chrX	22999940	intron,intron	stnA -,stnB -	chrX	23003571	intron,intron	stnA -,stnB -	chrX_13_22995001	chrX_22995001	RAL-727
2734	chrY	1419913	1419932	chrY	1420167	1420186	invader2	4	254	7.0	10.5	8.8	0.4	273	chrY	1419913	intergenic	not near genes	chrY	1420050	intergenic	not near genes	chrY	1420186	intergenic	not near genes	chrY_4_1420001	chrY_1420001	RAL-727