SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46354 46385 chr2L 46432 46460 10 77 4.5 2.5 3.5 2.2 106 chr2L 46354 intron Cda5 - chr2L 46407 intron Cda5 - chr2L 46460 intron Cda5 - chr2L_10_45001 chr2L_45001 RAL-727 2 chr2L 47461 47489 chr2L 52566 52594 jockey 24 5102 6.5 11.0 8.8 2.4 5133 chr2L 47461 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52594 intron Cda5 - chr2L_24_50001 chr2L_50001 RAL-727 3 chr2L 62025 62053 chr2L 62282 62311 15 260 54.5 51.0 52.8 0.3 286 chr2L 62025 intron Cda5 - chr2L 62168 intron Cda5 - chr2L 62311 intron Cda5 - chr2L_15_60001 chr2L_60001 RAL-727 4 chr2L 79835 79859 chr2L 80179 80203 9 341 6.5 9.5 8.0 1.0 368 chr2L 79835 intergenic not near genes chr2L 80019 intergenic not near genes chr2L 80203 intergenic not near genes chr2L_9_80001 chr2L_80001 RAL-727 5 chr2L 89713 89736 chr2L 89790 89813 9 73 12.0 3.5 7.8 1.0 100 chr2L 89713 intergenic not near genes chr2L 89763 intergenic not near genes chr2L 89813 intergenic not near genes chr2L_9_85001 chr2L_85001 RAL-727 6 chr2L 89740 89748 chr2L 89789 89824 4 70 7.5 3.0 5.2 0.6 84 chr2L 89740 intergenic not near genes chr2L 89782 intergenic not near genes chr2L 89824 intergenic not near genes chr2L_4_85001 chr2L_85001 RAL-727 7 chr2L 134863 134878 chr2L 134951 134955 6 84 13.5 5.0 9.2 0.6 92 chr2L 134863 intron CG11455 + chr2L 134909 intron CG11455 + chr2L 134955 intron CG11455 + chr2L_6_130001 chr2L_130001 RAL-727 8 chr2L 172056 172092 chr2L 172137 172170 10 81 2.0 2.0 2.0 3.3 114 chr2L 172056 intron spen + chr2L 172113 intron spen + chr2L 172170 intron spen + chr2L_10_170001 chr2L_170001 RAL-727 9 chr2L 263301 263318 chr2L 263446 263464 16 145 5.5 4.5 5.0 2.7 163 chr2L 263301 intron,3` UTR CG3645 -,CG17075 - chr2L 263382 intron,3` UTR CG3645 -,CG17075 - chr2L 263464 intron,3` UTR CG3645 -,CG17075 - chr2L_16_260001 chr2L_260001 RAL-727 10 chr2L 276545 276559 chr2L 276624 276641 9 82 5.5 6.0 5.8 1.3 96 chr2L 276545 intron CG17078 - chr2L 276593 intron CG17078 - chr2L 276641 intron CG17078 - chr2L_9_275001 chr2L_275001 RAL-727 11 chr2L 297685 297716 chr2L 297785 297800 7 97 4.0 4.0 4.0 1.4 115 chr2L 297685 intergenic Pi3K21B +,Hop + chr2L 297742 intergenic Pi3K21B +,Hop + chr2L 297800 intergenic Pi3K21B +,Hop + chr2L_7_295001 chr2L_295001 RAL-727 12 chr2L 347884 347918 chr2L 355384 355418 blood 17 7497 6.5 6.5 6.5 2.3 7534 chr2L 347884 3` UTR Plc21C + chr2L 351651 intron Plc21C + chr2L 355418 3` UTR Plc21C + chr2L_17_350001 chr2L_350001 RAL-727 13 chr2L 407947 407970 chr2L 408028 408051 14 81 6.0 6.0 6.0 2.0 104 chr2L 407947 3` UTR RpI135 + chr2L 407999 intergenic RpI135 +,AP-2alpha - chr2L 408051 3` UTR AP-2alpha - chr2L_14_405001 chr2L_405001 RAL-727 14 chr2L 504319 504349 chr2L 504395 504425 16 76 8.0 4.5 6.2 2.2 106 chr2L 504319 intron ush + chr2L 504372 intron ush + chr2L 504425 intron ush + chr2L_16_500001 chr2L_500001 RAL-727 15 chr2L 602273 602277 chr2L 602386 602390 4 113 2.5 5.5 4.0 0.8 117 chr2L 602273 intergenic not near genes chr2L 602332 intergenic CG13689 + chr2L 602390 intergenic CG13689 + chr2L_4_600001 chr2L_600001 RAL-727 16 chr2L 666280 666309 chr2L 666354 666385 6 73 0.5 0.5 0.5 4.0 105 chr2L 666280 intron ds - chr2L 666332 intron ds - chr2L 666385 intron ds - chr2L_6_665001 chr2L_665001 RAL-727 17 chr2L 686924 686942 chr2L 695960 695982 roo 4 9037 3.0 2.5 2.8 1.1 9058 chr2L 686924 intron ds - chr2L 691453 intron ds - chr2L 695982 intron ds - chr2L_4_690001 chr2L_690001 RAL-727 18 chr2L 726878 726907 chr2L 727147 727177 9 269 2.5 3.0 2.8 2.4 299 chr2L 726878 intergenic not near genes chr2L 727028 intergenic not near genes chr2L 727177 intergenic not near genes chr2L_9_725001 chr2L_725001 RAL-727 19 chr2L 764553 764575 chr2L 764653 764675 8 100 3.5 2.5 3.0 2.0 122 chr2L 764553 intergenic not near genes chr2L 764614 intergenic not near genes chr2L 764675 intergenic not near genes chr2L_8_760001 chr2L_760001 RAL-727 20 chr2L 770463 770491 chr2L 772244 772260 Bari1 8 1772 7.5 3.5 5.5 1.2 1797 chr2L 770463 intergenic not near genes chr2L 771362 intergenic not near genes chr2L 772260 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-727 21 chr2L 804364 804379 chr2L 804454 804476 5 100 0.5 2.5 1.5 2.0 112 chr2L 804364 intergenic not near genes chr2L 804420 intergenic not near genes chr2L 804476 intergenic not near genes chr2L_5_800001 chr2L_800001 RAL-727 22 chr2L 833213 833245 chr2L 833389 833420 19 173 4.5 2.0 3.2 4.5 207 chr2L 833213 3` UTR dock + chr2L 833316 intergenic dock +,drongo - chr2L 833420 intergenic drongo -,dock + chr2L_19_830001 chr2L_830001 RAL-727 23 chr2L 877842 877862 chr2L 877923 877942 4 80 5.0 3.0 4.0 0.8 100 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-727 24 chr2L 922463 922490 chr2L 922544 922571 13 81 3.5 4.0 3.8 2.7 108 chr2L 922463 intergenic CG4341 + chr2L 922517 intergenic CG4341 + chr2L 922571 intergenic CG4341 + chr2L_13_920001 chr2L_920001 RAL-727 25 chr2L 937048 937064 chr2L 937124 937140 6 76 1.0 1.0 1.0 3.0 92 chr2L 937048 intron CG4341 + chr2L 937094 intron CG4341 + chr2L 937140 intron CG4341 + chr2L_6_935001 chr2L_935001 RAL-727 26 chr2L 964555 964572 chr2L 964639 964654 7 83 4.5 4.0 4.2 1.3 99 chr2L 964555 intergenic not near genes chr2L 964604 intergenic not near genes chr2L 964654 intergenic not near genes chr2L_7_960001 chr2L_960001 RAL-727 27 chr2L 971914 971933 chr2L 972005 972024 4 91 4.0 1.5 2.8 1.1 110 chr2L 971914 intergenic not near genes chr2L 971969 intergenic not near genes chr2L 972024 intergenic not near genes chr2L_4_970001 chr2L_970001 RAL-727 28 chr2L 1035560 1035593 chr2L 1035637 1035667 15 76 3.0 7.5 5.2 2.4 107 chr2L 1035560 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_15_1035001 chr2L_1035001 RAL-727 29 chr2L 1066095 1066126 chr2L 1066173 1066207 14 80 4.0 6.0 5.0 2.3 112 chr2L 1066095 intron S - chr2L 1066151 intron S - chr2L 1066207 intron S - chr2L_14_1065001 chr2L_1065001 RAL-727 30 chr2L 1094236 1094265 chr2L 1094311 1094341 8 76 4.5 2.0 3.2 1.9 105 chr2L 1094236 intron CG4629 - chr2L 1094288 intron CG4629 - chr2L 1094341 intron CG4629 - chr2L_8_1090001 chr2L_1090001 RAL-727 31 chr2L 1137657 1137685 chr2L 1137837 1137864 18 180 5.0 9.0 7.0 2.2 207 chr2L 1137657 intron CG4577 + chr2L 1137760 intron CG4577 + chr2L 1137864 intron CG4577 + chr2L_18_1135001 chr2L_1135001 RAL-727 32 chr2L 1156859 1156894 chr2L 1156964 1156999 6 99 4.0 2.0 3.0 1.5 140 chr2L 1156859 intron capt - chr2L 1156929 intron capt - chr2L 1156999 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-727 33 chr2L 1220129 1220161 chr2L 1227594 1227627 blood 21 7465 6.0 4.0 5.0 3.5 7498 chr2L 1220129 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_21_1220001 chr2L_1220001 RAL-727 34 chr2L 1312875 1312900 chr2L 1312959 1312987 5 86 0.5 6.5 3.5 1.1 112 chr2L 1312875 intergenic not near genes chr2L 1312931 intergenic not near genes chr2L 1312987 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-727 35 chr2L 1327181 1327209 chr2L 1327577 1327609 11 396 2.0 3.0 2.5 3.1 428 chr2L 1327181 intergenic not near genes chr2L 1327395 intergenic not near genes chr2L 1327609 intergenic not near genes chr2L_11_1325001 chr2L_1325001 RAL-727 36 chr2L 1418411 1418438 chr2L 1418492 1418520 7 82 5.5 3.5 4.5 1.3 109 chr2L 1418411 intron lea - chr2L 1418466 intron lea - chr2L 1418520 intron lea - chr2L_7_1415001 chr2L_1415001 RAL-727 37 chr2L 1464163 1464167 chr2L 1464392 1464399 4 231 10.0 6.0 8.0 0.4 236 chr2L 1464163 intergenic not near genes chr2L 1464281 intergenic not near genes chr2L 1464399 intergenic not near genes chr2L_4_1460001 chr2L_1460001 RAL-727 38 chr2L 1464168 1464180 chr2L 1464391 1464406 4 228 6.0 5.5 5.8 0.6 238 chr2L 1464168 intergenic not near genes chr2L 1464287 intergenic not near genes chr2L 1464406 intergenic not near genes chr2L_4_1460001 chr2L_1460001 RAL-727 39 chr2L 1529065 1529078 chr2L 1529155 1529164 4 90 5.0 0.0 2.5 1.1 99 chr2L 1529065 intergenic not near genes chr2L 1529114 intergenic not near genes chr2L 1529164 intergenic not near genes chr2L_4_1525001 chr2L_1525001 RAL-727 40 chr2L 1549027 1549036 chr2L 1550097 1550107 4 1071 7.5 3.0 5.2 0.6 1080 chr2L 1549027 intergenic not near genes chr2L 1549567 intergenic not near genes chr2L 1550107 intergenic not near genes chr2L_4_1545001 chr2L_1545001 RAL-727 41 chr2L 1564466 1564477 chr2L 1564553 1564564 7 86 9.0 5.0 7.0 0.9 98 chr2L 1564466 intron haf + chr2L 1564515 intron haf + chr2L 1564564 intron haf + chr2L_7_1560001 chr2L_1560001 RAL-727 42 chr2L 1564478 1564494 chr2L 1564551 1564580 13 83 3.0 5.0 4.0 2.6 102 chr2L 1564478 intron haf + chr2L 1564529 intron haf + chr2L 1564580 intron haf + chr2L_13_1560001 chr2L_1560001 RAL-727 43 chr2L 1570690 1570718 chr2L 1573562 1573590 F-element 8 2872 3.0 7.0 5.0 1.3 2900 chr2L 1570690 intron haf + chr2L 1572140 intron haf + chr2L 1573590 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-727 44 chr2L 1580313 1580339 chr2L 1580521 1580547 7 208 1.5 3.5 2.5 2.0 234 chr2L 1580313 intron haf + chr2L 1580430 intron haf + chr2L 1580547 intron haf + chr2L_7_1580001 chr2L_1580001 RAL-727 45 chr2L 1590956 1590989 chr2L 1591032 1591065 22 73 9.0 6.5 7.8 2.5 109 chr2L 1590956 intron haf + chr2L 1591010 intron haf + chr2L 1591065 intron haf + chr2L_22_1590001 chr2L_1590001 RAL-727 46 chr2L 1635397 1635428 chr2L 1635533 1635564 15 136 0.0 4.0 2.0 5.0 167 chr2L 1635397 intergenic not near genes chr2L 1635480 intergenic not near genes chr2L 1635564 intergenic not near genes chr2L_15_1635001 chr2L_1635001 RAL-727 47 chr2L 1669143 1669160 chr2L 1669357 1669374 8 214 0.0 4.0 2.0 2.7 231 chr2L 1669143 intron chinmo + chr2L 1669258 intron chinmo + chr2L 1669374 intron chinmo + chr2L_8_1665001 chr2L_1665001 RAL-727 48 chr2L 1678976 1679009 chr2L 1686441 1686474 blood 15 7463 3.0 4.5 3.8 3.1 7498 chr2L 1678976 intron chinmo + chr2L 1682725 intron chinmo + chr2L 1686474 intron chinmo + chr2L_15_1680001 chr2L_1680001 RAL-727 49 chr2L 1687026 1687061 chr2L 1687104 1687105 15 69 1.0 3.0 2.0 5.0 79 chr2L 1687026 intron chinmo + chr2L 1687066 intron chinmo + chr2L 1687105 intron chinmo + chr2L_15_1685001 chr2L_1685001 RAL-727 50 chr2L 1711358 1711387 chr2L 1711682 1711711 mdg3 10 322 2.5 6.0 4.2 1.9 353 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_10_1710001 chr2L_1710001 RAL-727 51 chr2L 1721826 1721853 chr2L 1721910 1721937 12 84 0.5 4.5 2.5 3.4 111 chr2L 1721826 intron Rim2 - chr2L 1721882 intron Rim2 - chr2L 1721937 intron Rim2 - chr2L_12_1720001 chr2L_1720001 RAL-727 52 chr2L 1724810 1724838 chr2L 1724887 1724918 18 81 4.0 3.5 3.8 3.8 108 chr2L 1724810 3` UTR Eno - chr2L 1724864 3` UTR Eno - chr2L 1724918 3` UTR Eno - chr2L_18_1720001 chr2L_1720001 RAL-727 53 chr2L 1789141 1789169 chr2L 1789689 1789715 7 546 5.5 5.0 5.2 1.1 574 chr2L 1789141 exon Gr22d - chr2L 1789428 exon Gr22d - chr2L 1789715 exon Gr22d - chr2L_7_1785001 chr2L_1785001 RAL-727 54 chr2L 1820121 1820129 chr2L 1820201 1820214 7 84 2.5 5.0 3.8 1.5 93 chr2L 1820121 intergenic not near genes chr2L 1820168 intergenic not near genes chr2L 1820214 intergenic not near genes chr2L_7_1820001 chr2L_1820001 RAL-727 55 chr2L 1825248 1825274 chr2L 1825410 1825437 5 163 7.5 4.0 5.8 0.7 189 chr2L 1825248 exon CG31664 - chr2L 1825342 exon CG31664 - chr2L 1825437 exon CG31664 - chr2L_5_1825001 chr2L_1825001 RAL-727 56 chr2L 1995685 1995704 chr2L 1995771 1995797 5 83 5.5 3.5 4.5 0.9 112 chr2L 1995685 intergenic not near genes chr2L 1995741 intergenic not near genes chr2L 1995797 intergenic not near genes chr2L_5_1995001 chr2L_1995001 RAL-727 57 chr2L 2043466 2043491 chr2L 2043556 2043581 14 90 11.0 3.5 7.2 1.7 115 chr2L 2043466 3` UTR Su(dx) + chr2L 2043524 3` UTR Su(dx) + chr2L 2043581 3` UTR Su(dx) + chr2L_14_2040001 chr2L_2040001 RAL-727 58 chr2L 2074846 2074878 chr2L 2074937 2074969 10 90 6.0 5.0 5.5 1.5 123 chr2L 2074846 intron dpr3 - chr2L 2074908 intron dpr3 - chr2L 2074969 intron dpr3 - chr2L_10_2070001 chr2L_2070001 RAL-727 59 chr2L 2100379 2100396 chr2L 2109530 2109547 roo 9 9149 5.0 7.5 6.2 1.2 9168 chr2L 2100379 intron dpr3 - chr2L 2104963 intron dpr3 - chr2L 2109547 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-727 60 chr2L 2100398 2100408 chr2L 2109529 2109558 roo 4 9139 4.5 7.0 5.8 0.6 9160 chr2L 2100398 intron dpr3 - chr2L 2104978 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-727 61 chr2L 2112124 2112144 chr2L 2119775 2119793 opus 13 7652 2.5 2.0 2.2 4.1 7669 chr2L 2112124 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119793 intergenic not near genes chr2L_13_2115001 chr2L_2115001 RAL-727 62 chr2L 2126371 2126394 chr2L 2126503 2126536 7 140 3.5 5.0 4.2 1.3 165 chr2L 2126371 intergenic not near genes chr2L 2126454 intergenic not near genes chr2L 2126536 intergenic not near genes chr2L_7_2125001 chr2L_2125001 RAL-727 63 chr2L 2145746 2145775 chr2L 2145832 2145860 13 85 9.5 6.0 7.8 1.5 114 chr2L 2145746 3` UTR CG11723 - chr2L 2145803 3` UTR CG11723 - chr2L 2145860 3` UTR CG11723 - chr2L_13_2145001 chr2L_2145001 RAL-727 64 chr2L 2260803 2260831 chr2L 2260889 2260909 10 84 5.5 1.0 3.2 2.4 106 chr2L 2260803 intergenic not near genes chr2L 2260856 intergenic not near genes chr2L 2260909 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-727 65 chr2L 2262310 2262325 chr2L 2262387 2262402 9 77 7.5 0.0 3.8 1.9 92 chr2L 2262310 intergenic not near genes chr2L 2262356 intergenic not near genes chr2L 2262402 intergenic not near genes chr2L_9_2260001 chr2L_2260001 RAL-727 66 chr2L 2282993 2283015 chr2L 2283145 2283175 9 157 3.0 7.5 5.2 1.5 182 chr2L 2282993 intergenic not near genes chr2L 2283084 intergenic not near genes chr2L 2283175 intergenic not near genes chr2L_9_2280001 chr2L_2280001 RAL-727 67 chr2L 2290599 2290618 chr2L 2290675 2290694 4 76 1.5 5.0 3.2 1.0 95 chr2L 2290599 exon robl22E - chr2L 2290646 intron robl22E - chr2L 2290694 intron robl22E - chr2L_4_2290001 chr2L_2290001 RAL-727 68 chr2L 2357192 2357214 chr2L 2357309 2357332 12 113 5.0 14.5 9.8 1.1 140 chr2L 2357192 5` UTR,intron CG9967 -,eys + chr2L 2357262 5` UTR,intron CG9967 -,eys + chr2L 2357332 5` UTR,intron CG9967 -,eys + chr2L_12_2355001 chr2L_2355001 RAL-727 69 chr2L 2372363 2372403 chr2L 2372449 2372483 9 84 0.0 3.0 1.5 3.6 120 chr2L 2372363 intergenic CG3609 - chr2L 2372423 intergenic CG3609 - chr2L 2372483 3` UTR CG3609 - chr2L_9_2370001 chr2L_2370001 RAL-727 70 chr2L 2392161 2392185 chr2L 2392271 2392295 5 110 3.5 6.0 4.8 0.9 134 chr2L 2392161 intron VGlut + chr2L 2392228 intron VGlut + chr2L 2392295 intron VGlut + chr2L_5_2390001 chr2L_2390001 RAL-727 71 chr2L 2427377 2427398 chr2L 2427463 2427484 9 86 6.5 7.0 6.8 1.2 107 chr2L 2427377 3` UTR CR44912 - chr2L 2427430 3` UTR CR44912 - chr2L 2427484 3` UTR CR44912 - chr2L_9_2425001 chr2L_2425001 RAL-727 72 chr2L 2439275 2439279 chr2L 2439347 2439354 4 74 11.0 5.5 8.2 0.4 79 chr2L 2439275 intron dpp + chr2L 2439314 intron dpp + chr2L 2439354 intron dpp + chr2L_4_2435001 chr2L_2435001 RAL-727 73 chr2L 2587815 2587842 chr2L 2587893 2587921 11 77 4.0 6.0 5.0 1.8 106 chr2L 2587815 intergenic not near genes chr2L 2587868 intergenic not near genes chr2L 2587921 intergenic not near genes chr2L_11_2585001 chr2L_2585001 RAL-727 74 chr2L 2618036 2618068 chr2L 2618115 2618147 11 75 2.5 2.0 2.2 3.4 111 chr2L 2618036 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618147 intergenic not near genes chr2L_11_2615001 chr2L_2615001 RAL-727 75 chr2L 2667623 2667655 chr2L 2667702 2667732 14 78 5.0 4.0 4.5 2.5 109 chr2L 2667623 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667732 intergenic not near genes chr2L_14_2665001 chr2L_2665001 RAL-727 76 chr2L 2698882 2698894 chr2L 2698965 2698981 6 86 2.0 3.5 2.8 1.6 99 chr2L 2698882 intron CG31690 + chr2L 2698932 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-727 77 chr2L 2713514 2713527 chr2L 2713613 2713622 7 98 7.0 8.5 7.8 0.8 108 chr2L 2713514 intron CG31690 + chr2L 2713568 intron CG31690 + chr2L 2713622 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-727 78 chr2L 2713541 2713551 chr2L 2713609 2713650 6 84 1.5 8.0 4.8 1.0 109 chr2L 2713541 intron CG31690 + chr2L 2713596 intron CG31690 + chr2L 2713650 intron CG31690 + chr2L_6_2710001 chr2L_2710001 RAL-727 79 chr2L 2772614 2772628 chr2L 2779194 2779210 297 6 6581 2.5 5.5 4.0 1.2 6596 chr2L 2772614 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779210 3` UTR Syt1 - chr2L_6_2775001 chr2L_2775001 RAL-727 80 chr2L 2826542 2826576 chr2L 2826632 2826652 7 79 0.0 0.0 0.0 7.0 110 chr2L 2826542 intron Duox - chr2L 2826597 intron Duox - chr2L 2826652 intron Duox - chr2L_7_2825001 chr2L_2825001 RAL-727 81 chr2L 2885374 2885397 chr2L 2885451 2885465 10 76 2.5 4.0 3.2 2.4 91 chr2L 2885374 intron NTPase - chr2L 2885420 intron NTPase - chr2L 2885465 intron NTPase - chr2L_10_2885001 chr2L_2885001 RAL-727 82 chr2L 2933303 2933311 chr2L 2935480 2935485 pogo 5 2177 4.5 5.5 5.0 0.8 2182 chr2L 2933303 intron lilli + chr2L 2934394 intron lilli + chr2L 2935485 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-727 83 chr2L 3008896 3008920 chr2L 3008992 3008995 8 93 2.5 4.5 3.5 1.8 99 chr2L 3008896 intron CG17265 + chr2L 3008946 intron CG17265 + chr2L 3008995 intron CG17265 + chr2L_8_3005001 chr2L_3005001 RAL-727 84 chr2L 3073031 3073064 chr2L 3078234 3078266 copia 15 5203 3.0 6.0 4.5 2.7 5235 chr2L 3073031 intron toc - chr2L 3075648 intron toc - chr2L 3078266 intron toc - chr2L_15_3075001 chr2L_3075001 RAL-727 85 chr2L 3078508 3078523 chr2L 3078796 3078810 4 288 7.5 5.0 6.2 0.6 302 chr2L 3078508 intron toc - chr2L 3078659 intron toc - chr2L 3078810 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-727 86 chr2L 3147282 3147308 chr2L 3147352 3147383 15 73 3.0 2.5 2.8 3.9 101 chr2L 3147282 3` UTR Mad - chr2L 3147332 3` UTR Mad - chr2L 3147383 3` UTR Mad - chr2L_15_3145001 chr2L_3145001 RAL-727 87 chr2L 3191511 3191542 chr2L 3191592 3191623 14 80 3.5 4.0 3.8 2.9 112 chr2L 3191511 intron CG34393 - chr2L 3191567 intron CG34393 - chr2L 3191623 intron CG34393 - chr2L_14_3190001 chr2L_3190001 RAL-727 88 chr2L 3192207 3192240 chr2L 3192318 3192351 14 110 3.0 4.0 3.5 3.1 144 chr2L 3192207 exon CG34393 - chr2L 3192279 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_14_3190001 chr2L_3190001 RAL-727 89 chr2L 3251494 3251527 chr2L 3259059 3259092 springer 15 7565 5.5 2.5 4.0 3.0 7598 chr2L 3251494 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_15_3255001 chr2L_3255001 RAL-727 90 chr2L 3291238 3291269 chr2L 3291318 3291348 12 77 3.5 5.0 4.2 2.3 110 chr2L 3291238 intergenic CG9664 - chr2L 3291293 3` UTR CG9664 - chr2L 3291348 3` UTR CG9664 - chr2L_12_3290001 chr2L_3290001 RAL-727 91 chr2L 3323260 3323283 chr2L 3323364 3323390 19 105 7.5 7.0 7.2 2.3 130 chr2L 3323260 intergenic CG8837 + chr2L 3323325 intergenic CG8837 + chr2L 3323390 intergenic CG8837 + chr2L_19_3320001 chr2L_3320001 RAL-727 92 chr2L 3386246 3386259 chr2L 3386354 3386366 5 106 4.5 8.0 6.2 0.7 120 chr2L 3386246 intergenic not near genes chr2L 3386306 intergenic not near genes chr2L 3386366 intergenic CR45301 - chr2L_5_3385001 chr2L_3385001 RAL-727 93 chr2L 3388598 3388623 chr2L 3388839 3388858 pogo 5 240 4.5 3.5 4.0 1.0 260 chr2L 3388598 intergenic CG42460 - chr2L 3388728 intergenic CG42460 - chr2L 3388858 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 RAL-727 94 chr2L 3401863 3401898 chr2L 3401955 3401990 10 92 3.5 3.0 3.2 2.4 127 chr2L 3401863 intergenic not near genes chr2L 3401926 intergenic not near genes chr2L 3401990 intergenic not near genes chr2L_10_3400001 chr2L_3400001 RAL-727 95 chr2L 3508353 3508373 chr2L 3508431 3508451 10 78 0.0 8.5 4.2 1.9 98 chr2L 3508353 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508451 intergenic CR45299 +,tim - chr2L_10_3505001 chr2L_3505001 RAL-727 96 chr2L 3547391 3547422 chr2L 3547498 3547529 14 106 9.5 2.5 6.0 2.0 138 chr2L 3547391 3` UTR drm + chr2L 3547460 3` UTR drm + chr2L 3547529 3` UTR drm + chr2L_14_3545001 chr2L_3545001 RAL-727 97 chr2L 3601086 3601118 chr2L 3601171 3601198 11 84 3.0 0.0 1.5 4.4 112 chr2L 3601086 intergenic not near genes chr2L 3601142 intergenic not near genes chr2L 3601198 intergenic not near genes chr2L_11_3600001 chr2L_3600001 RAL-727 98 chr2L 3649788 3649805 chr2L 3654990 3655005 copia 7 5202 9.5 9.0 9.2 0.7 5217 chr2L 3649788 intron for - chr2L 3652396 intron for - chr2L 3655005 intron for - chr2L_7_3650001 chr2L_3650001 RAL-727 99 chr2L 3663307 3663338 chr2L 3663386 3663417 15 78 6.5 6.0 6.2 2.1 110 chr2L 3663307 intron CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663417 intron CG34340 + chr2L_15_3660001 chr2L_3660001 RAL-727 100 chr2L 3844346 3844354 chr2L 3844458 3844466 7 111 3.0 2.5 2.8 1.8 120 chr2L 3844346 intergenic not near genes chr2L 3844406 intergenic not near genes chr2L 3844466 intergenic not near genes chr2L_7_3840001 chr2L_3840001 RAL-727 101 chr2L 3950086 3950107 chr2L 3950162 3950182 16 76 2.5 3.0 2.8 4.2 96 chr2L 3950086 intron fred - chr2L 3950134 intron fred - chr2L 3950182 intron fred - chr2L_16_3950001 chr2L_3950001 RAL-727 102 chr2L 3997570 3997580 chr2L 3997658 3997668 5 87 0.0 5.5 2.8 1.3 98 chr2L 3997570 intergenic not near genes chr2L 3997619 intergenic not near genes chr2L 3997668 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-727 103 chr2L 4037800 4037808 chr2L 4037887 4037895 5 87 4.5 5.5 5.0 0.8 95 chr2L 4037800 intron ed + chr2L 4037848 intron ed + chr2L 4037895 intron ed + chr2L_5_4035001 chr2L_4035001 RAL-727 104 chr2L 4066056 4066064 chr2L 4068869 4068889 Juan 4 2822 3.0 5.0 4.0 0.8 2833 chr2L 4066056 intron ed + chr2L 4067472 intron ed + chr2L 4068889 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-727 105 chr2L 4110781 4110811 chr2L 4110963 4110993 19 182 8.0 8.5 8.2 2.1 212 chr2L 4110781 intron ed + chr2L 4110887 intron ed + chr2L 4110993 intron ed + chr2L_19_4110001 chr2L_4110001 RAL-727 106 chr2L 4150631 4150651 chr2L 4150701 4150731 10 72 2.5 5.0 3.8 2.1 100 chr2L 4150631 exon CG2955 + chr2L 4150681 exon CG2955 + chr2L 4150731 exon CG2955 + chr2L_10_4150001 chr2L_4150001 RAL-727 107 chr2L 4160508 4160532 chr2L 4160912 4160943 8 409 1.5 2.5 2.0 2.7 435 chr2L 4160508 intergenic not near genes chr2L 4160726 intergenic not near genes chr2L 4160943 intergenic not near genes chr2L_8_4160001 chr2L_4160001 RAL-727 108 chr2L 4184497 4184509 chr2L 4184816 4184828 6 319 0.5 10.0 5.2 1.0 331 chr2L 4184497 intergenic not near genes chr2L 4184662 intergenic not near genes chr2L 4184828 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-727 109 chr2L 4256571 4256576 chr2L 4256650 4256656 6 80 0.0 5.5 2.8 1.6 85 chr2L 4256571 intergenic CR45295 -,CR45296 -,CR45294 - chr2L 4256614 intergenic CR45295 -,CR45296 - chr2L 4256656 intergenic CR45295 -,CR45296 - chr2L_6_4255001 chr2L_4255001 RAL-727 110 chr2L 4300262 4300292 chr2L 4300337 4300342 8 72 6.5 0.5 3.5 1.8 80 chr2L 4300262 intron tutl + chr2L 4300302 intron tutl + chr2L 4300342 intron tutl + chr2L_8_4300001 chr2L_4300001 RAL-727 111 chr2L 4309455 4309480 chr2L 4309540 4309565 12 84 4.0 3.0 3.5 2.7 110 chr2L 4309455 intron tutl + chr2L 4309510 intron tutl + chr2L 4309565 intron tutl + chr2L_12_4305001 chr2L_4305001 RAL-727 112 chr2L 4336068 4336083 chr2L 4337934 4337948 8 1866 50.5 34.5 42.5 0.2 1880 chr2L 4336068 intron Atet + chr2L 4337008 intron Atet + chr2L 4337948 intron Atet + chr2L_8_4335001 chr2L_4335001 RAL-727 113 chr2L 4351482 4351488 chr2L 4351558 4351564 7 76 7.5 7.5 7.5 0.8 82 chr2L 4351482 intergenic CR44700 + chr2L 4351523 intergenic CR44700 + chr2L 4351564 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-727 114 chr2L 4351493 4351501 chr2L 4351555 4351577 10 72 4.5 7.0 5.8 1.5 84 chr2L 4351493 intergenic CR44700 + chr2L 4351535 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_10_4350001 chr2L_4350001 RAL-727 115 chr2L 4388842 4388873 chr2L 4388929 4388957 4 86 1.5 1.5 1.5 1.6 115 chr2L 4388842 exon Tps1 + chr2L 4388900 intron Tps1 + chr2L 4388957 intron Tps1 + chr2L_4_4385001 chr2L_4385001 RAL-727 116 chr2L 4424513 4424544 chr2L 4424624 4424655 19 110 9.0 5.5 7.2 2.3 142 chr2L 4424513 intron CG15431 - chr2L 4424584 intron CG15431 - chr2L 4424655 intron CG15431 - chr2L_19_4420001 chr2L_4420001 RAL-727 117 chr2L 4434520 4434549 chr2L 4434637 4434666 11 114 3.5 4.5 4.0 2.2 146 chr2L 4434520 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L 4434593 intron,intron,intron CG15431 -,CG34177 +,CG34178 + chr2L 4434666 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L_11_4430001 chr2L_4430001 RAL-727 118 chr2L 4601703 4601735 chr2L 4609144 4609176 mdg1 16 7439 4.5 5.5 5.0 2.7 7473 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-727 119 chr2L 4918169 4918198 chr2L 4923242 4923271 jockey 8 5073 4.5 8.0 6.2 1.1 5102 chr2L 4918169 intron hoe1 - chr2L 4920720 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_8_4920001 chr2L_4920001 RAL-727 120 chr2L 4953512 4953533 chr2L 4953753 4953774 pogo 11 241 6.5 0.0 3.2 2.6 262 chr2L 4953512 intergenic Jon25Bii - chr2L 4953643 intergenic not near genes chr2L 4953774 intergenic not near genes chr2L_11_4950001 chr2L_4950001 RAL-727 121 chr2L 5025134 5025149 chr2L 5025209 5025225 14 76 5.5 0.0 2.8 3.7 91 chr2L 5025134 intron vkg - chr2L 5025180 intron vkg - chr2L 5025225 intron vkg - chr2L_14_5025001 chr2L_5025001 RAL-727 122 chr2L 5027971 5027985 chr2L 5028050 5028069 12 82 4.0 12.5 8.2 1.3 98 chr2L 5027971 intron vkg - chr2L 5028020 intron vkg - chr2L 5028069 intron vkg - chr2L_12_5025001 chr2L_5025001 RAL-727 123 chr2L 5092414 5092440 chr2L 5092501 5092527 10 87 5.5 6.0 5.8 1.5 113 chr2L 5092414 intron pgant5 - chr2L 5092470 intron pgant5 - chr2L 5092527 intron pgant5 - chr2L_10_5090001 chr2L_5090001 RAL-727 124 chr2L 5093757 5093792 chr2L 5093865 5093900 4 108 1.5 1.5 1.5 1.6 143 chr2L 5093757 intergenic pgant5 -,CG5828 + chr2L 5093828 intergenic CG5828 +,pgant5 - chr2L 5093900 intergenic CG5828 +,pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-727 125 chr2L 5120974 5120977 chr2L 5121068 5121071 4 94 18.5 5.0 11.8 0.3 97 chr2L 5120974 intron Msp300 + chr2L 5121022 intron Msp300 + chr2L 5121071 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-727 126 chr2L 5120986 5121006 chr2L 5121067 5121100 10 91 9.5 5.0 7.2 1.2 114 chr2L 5120986 intron Msp300 + chr2L 5121043 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_10_5120001 chr2L_5120001 RAL-727 127 chr2L 5265301 5265306 chr2L 5267771 5267786 4 2473 40.5 36.0 38.2 0.1 2485 chr2L 5265301 intron,exon tkv -,Cyp4ac1 + chr2L 5266544 intron,exon tkv -,Cyp4ac2 + chr2L 5267786 intron,exon tkv -,Cyp4ac2 + chr2L_4_5265001 chr2L_5265001 RAL-727 128 chr2L 5285598 5285634 chr2L 5285714 5285750 24 112 4.0 2.5 3.2 5.7 152 chr2L 5285598 intergenic not near genes chr2L 5285674 intergenic not near genes chr2L 5285750 intergenic not near genes chr2L_24_5285001 chr2L_5285001 RAL-727 129 chr2L 5342767 5342803 chr2L 5345147 5345182 Doc 13 2380 5.5 4.0 4.8 2.2 2415 chr2L 5342767 intergenic not near genes chr2L 5343974 intergenic not near genes chr2L 5345182 intergenic not near genes chr2L_13_5340001 chr2L_5340001 RAL-727 130 chr2L 5378429 5378451 chr2L 5378508 5378530 12 79 3.5 2.0 2.8 3.2 101 chr2L 5378429 intergenic not near genes chr2L 5378480 intergenic not near genes chr2L 5378530 intergenic not near genes chr2L_12_5375001 chr2L_5375001 RAL-727 131 chr2L 5448013 5448023 chr2L 5448097 5448107 4 84 0.0 3.0 1.5 1.6 94 chr2L 5448013 intergenic not near genes chr2L 5448060 intergenic not near genes chr2L 5448107 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-727 132 chr2L 5455416 5455449 chr2L 5455498 5455530 12 82 1.5 2.5 2.0 4.0 114 chr2L 5455416 intergenic not near genes chr2L 5455473 intergenic not near genes chr2L 5455530 intergenic not near genes chr2L_12_5455001 chr2L_5455001 RAL-727 133 chr2L 5475158 5475162 chr2L 5475261 5475267 4 104 3.5 4.0 3.8 0.8 109 chr2L 5475158 intergenic not near genes chr2L 5475212 intergenic not near genes chr2L 5475267 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-727 134 chr2L 5488016 5488035 chr2L 5488096 5488115 7 80 5.0 1.0 3.0 1.8 99 chr2L 5488016 intergenic not near genes chr2L 5488066 intergenic not near genes chr2L 5488115 intergenic not near genes chr2L_7_5485001 chr2L_5485001 RAL-727 135 chr2L 5508536 5508552 chr2L 5508608 5508628 4 75 4.0 3.0 3.5 0.9 92 chr2L 5508536 intergenic not near genes chr2L 5508582 intergenic not near genes chr2L 5508628 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-727 136 chr2L 5516657 5516682 chr2L 5516736 5516761 11 79 5.5 8.5 7.0 1.4 104 chr2L 5516657 intergenic not near genes chr2L 5516709 intergenic not near genes chr2L 5516761 intergenic not near genes chr2L_11_5515001 chr2L_5515001 RAL-727 137 chr2L 5691833 5691856 chr2L 5691935 5691958 5 102 0.0 3.0 1.5 2.0 125 chr2L 5691833 intergenic CR44819 +,CR44820 - chr2L 5691896 intergenic CR44819 +,CR44820 - chr2L 5691958 intergenic CR44819 + chr2L_5_5690001 chr2L_5690001 RAL-727 138 chr2L 5720259 5720295 chr2L 5720344 5720382 23 84 5.5 4.0 4.8 4.0 123 chr2L 5720259 intron CG11149 - chr2L 5720320 intron CG11149 - chr2L 5720382 intron CG11149 - chr2L_23_5720001 chr2L_5720001 RAL-727 139 chr2L 5816185 5816217 chr2L 5816256 5816293 15 73 2.5 8.0 5.2 2.4 108 chr2L 5816185 intergenic not near genes chr2L 5816239 intergenic not near genes chr2L 5816293 intergenic not near genes chr2L_15_5815001 chr2L_5815001 RAL-727 140 chr2L 5827712 5827740 chr2L 5836720 5836737 roo 15 9005 8.0 8.0 8.0 1.7 9025 chr2L 5827712 intron TrissinR + chr2L 5832224 intron TrissinR + chr2L 5836737 intron TrissinR + chr2L_15_5830001 chr2L_5830001 RAL-727 141 chr2L 5887601 5887633 chr2L 5887682 5887714 15 80 4.0 7.0 5.5 2.3 113 chr2L 5887601 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887714 3` UTR CR44577 - chr2L_15_5885001 chr2L_5885001 RAL-727 142 chr2L 5897595 5897627 chr2L 5897678 5897708 29 80 7.5 7.5 7.5 3.4 113 chr2L 5897595 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897708 intergenic not near genes chr2L_29_5895001 chr2L_5895001 RAL-727 143 chr2L 5904461 5904473 chr2L 5904541 5904553 7 80 4.0 1.0 2.5 2.0 92 chr2L 5904461 intron CG9021 - chr2L 5904507 intron CG9021 - chr2L 5904553 intron CG9021 - chr2L_7_5900001 chr2L_5900001 RAL-727 144 chr2L 5931316 5931327 chr2L 5931428 5931439 5 112 4.5 11.0 7.8 0.6 123 chr2L 5931316 intron dsf + chr2L 5931378 intron dsf + chr2L 5931439 intron dsf + chr2L_5_5930001 chr2L_5930001 RAL-727 145 chr2L 5944552 5944575 chr2L 5948994 5949017 9 4443 23.5 34.0 28.8 0.3 4465 chr2L 5944552 intron Gpdh + chr2L 5946784 intron Gpdh + chr2L 5949017 intergenic Gpdh +,CG9044 + chr2L_9_5945001 chr2L_5945001 RAL-727 146 chr2L 5962267 5962302 chr2L 5962343 5962378 13 75 3.5 1.5 2.5 3.7 111 chr2L 5962267 intergenic not near genes chr2L 5962322 intergenic not near genes chr2L 5962378 intergenic not near genes chr2L_13_5960001 chr2L_5960001 RAL-727 147 chr2L 6002437 6002471 chr2L 6002523 6002555 12 85 3.5 3.0 3.2 2.9 118 chr2L 6002437 3` UTR Tsp26A + chr2L 6002496 3` UTR Tsp26A + chr2L 6002555 3` UTR Tsp26A + chr2L_12_6000001 chr2L_6000001 RAL-727 148 chr2L 6050445 6050460 chr2L 6050549 6050564 5 104 4.5 3.0 3.8 1.0 119 chr2L 6050445 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050564 intergenic CG12393 +,CG9135 + chr2L_5_6050001 chr2L_6050001 RAL-727 149 chr2L 6078166 6078189 chr2L 6078249 6078261 15 81 8.0 6.5 7.2 1.8 95 chr2L 6078166 intergenic CR9162 + chr2L 6078214 intergenic CR9162 + chr2L 6078261 intergenic CR9162 + chr2L_15_6075001 chr2L_6075001 RAL-727 150 chr2L 6117559 6117574 chr2L 6117656 6117671 4 97 6.0 4.5 5.2 0.6 112 chr2L 6117559 intron stai + chr2L 6117615 intron stai + chr2L 6117671 intron stai + chr2L_4_6115001 chr2L_6115001 RAL-727 151 chr2L 6130770 6130782 chr2L 6130855 6130867 4 85 7.0 1.0 4.0 0.8 97 chr2L 6130770 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130818 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130867 intergenic CG9222 +,CG42730 -,tectonic - chr2L_4_6130001 chr2L_6130001 RAL-727 152 chr2L 6133580 6133609 chr2L 6133669 6133698 8 84 5.0 5.0 5.0 1.3 118 chr2L 6133580 3` UTR CR45719 - chr2L 6133639 3` UTR CR45719 - chr2L 6133698 intergenic CR45719 - chr2L_8_6130001 chr2L_6130001 RAL-727 153 chr2L 6185442 6185471 chr2L 6185520 6185549 10 71 2.0 4.5 3.2 2.4 107 chr2L 6185442 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_10_6185001 chr2L_6185001 RAL-727 154 chr2L 6268526 6268546 chr2L 6268611 6268632 5 86 4.5 1.5 3.0 1.2 106 chr2L 6268526 intron Ddr + chr2L 6268579 intron Ddr + chr2L 6268632 intron Ddr + chr2L_5_6265001 chr2L_6265001 RAL-727 155 chr2L 6279641 6279648 chr2L 6279720 6279727 INE-1 4 79 7.5 3.5 5.5 0.6 86 chr2L 6279641 intron Ddr + chr2L 6279684 intron Ddr + chr2L 6279727 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-727 156 chr2L 6363156 6363163 chr2L 6366071 6366084 Burdock 5 2918 8.5 3.0 5.8 0.7 2928 chr2L 6363156 intergenic not near genes chr2L 6364620 intergenic not near genes chr2L 6366084 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-727 157 chr2L 6377947 6377953 chr2L 6378023 6378025 5 74 2.0 6.0 4.0 1.0 78 chr2L 6377947 3` UTR CG42368 - chr2L 6377986 3` UTR CG42368 - chr2L 6378025 3` UTR CG42368 - chr2L_5_6375001 chr2L_6375001 RAL-727 158 chr2L 6380066 6380094 chr2L 6380147 6380174 13 79 4.0 9.0 6.5 1.7 108 chr2L 6380066 intron CG42368 - chr2L 6380120 intron CG42368 - chr2L 6380174 intron CG42368 - chr2L_13_6380001 chr2L_6380001 RAL-727 159 chr2L 6426854 6426888 chr2L 6445114 6445148 roo 22 18259 6.0 6.0 6.0 3.1 18294 chr2L 6426854 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_22_6435001 chr2L_6435001 RAL-727 160 chr2L 6544373 6544394 chr2L 6544465 6544486 8 92 7.0 5.0 6.0 1.1 113 chr2L 6544373 intron eya - chr2L 6544430 intron eya - chr2L 6544486 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-727 161 chr2L 6640905 6640936 chr2L 6641000 6641031 12 93 9.5 3.0 6.2 1.7 126 chr2L 6640905 exon CG31635 - chr2L 6640968 intron CG31635 - chr2L 6641031 intron CG31635 - chr2L_12_6640001 chr2L_6640001 RAL-727 162 chr2L 6655525 6655546 chr2L 6655887 6655908 9 359 3.5 4.0 3.8 1.9 383 chr2L 6655525 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655908 exon CG31633 - chr2L_9_6655001 chr2L_6655001 RAL-727 163 chr2L 6876775 6876807 chr2L 6882963 6882968 diver 6 6183 4.5 3.5 4.0 1.2 6193 chr2L 6876775 intron Nlg2 + chr2L 6879872 intron Nlg2 + chr2L 6882968 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-727 164 chr2L 7007412 7007431 chr2L 7007515 7007534 9 103 8.0 6.0 7.0 1.1 122 chr2L 7007412 intron uif - chr2L 7007473 intron uif - chr2L 7007534 intron uif - chr2L_9_7005001 chr2L_7005001 RAL-727 165 chr2L 7025922 7025935 chr2L 7026007 7026020 6 84 3.5 3.5 3.5 1.3 98 chr2L 7025922 intron CG31908 - chr2L 7025971 intron CG31908 - chr2L 7026020 intron CG31908 - chr2L_6_7025001 chr2L_7025001 RAL-727 166 chr2L 7030078 7030110 chr2L 7030159 7030191 8 80 1.5 4.0 2.8 2.1 113 chr2L 7030078 intergenic Rab30 - chr2L 7030134 intergenic Rab30 - chr2L 7030191 intergenic Rab30 - chr2L_8_7030001 chr2L_7030001 RAL-727 167 chr2L 7043511 7043518 chr2L 7043598 7043604 7 87 9.5 0.0 4.8 1.2 93 chr2L 7043511 intron milt + chr2L 7043558 intron milt + chr2L 7043604 intron milt + chr2L_7_7040001 chr2L_7040001 RAL-727 168 chr2L 7125797 7125807 chr2L 7125905 7125923 4 114 2.0 4.0 3.0 1.0 126 chr2L 7125797 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125923 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-727 169 chr2L 7126859 7126877 chr2L 7126938 7126956 5 79 5.5 1.0 3.2 1.2 97 chr2L 7126859 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126956 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-727 170 chr2L 7143203 7143234 chr2L 7143799 7143830 17 593 6.5 7.0 6.8 2.2 627 chr2L 7143203 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143516 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143830 intron,5` UTR Pvf3 -,CR44612 + chr2L_17_7140001 chr2L_7140001 RAL-727 171 chr2L 7246554 7246580 chr2L 7247413 7247439 4 859 0.0 6.5 3.2 1.0 885 chr2L 7246554 intron Ndae1 - chr2L 7246996 intron Ndae1 - chr2L 7247439 intron Ndae1 - chr2L_4_7245001 chr2L_7245001 RAL-727 172 chr2L 7254532 7254547 chr2L 7254610 7254625 4 78 0.0 3.0 1.5 1.6 93 chr2L 7254532 intergenic not near genes chr2L 7254578 intergenic not near genes chr2L 7254625 intergenic not near genes chr2L_4_7250001 chr2L_7250001 RAL-727 173 chr2L 7335201 7335230 chr2L 7335298 7335327 11 97 6.0 1.5 3.8 2.3 126 chr2L 7335201 intron Wnt6 + chr2L 7335264 intron Wnt6 + chr2L 7335327 intron Wnt6 + chr2L_11_7335001 chr2L_7335001 RAL-727 174 chr2L 7337002 7337027 chr2L 7337079 7337104 14 75 3.0 4.0 3.5 3.1 102 chr2L 7337002 intron Wnt6 + chr2L 7337053 intron Wnt6 + chr2L 7337104 intron Wnt6 + chr2L_14_7335001 chr2L_7335001 RAL-727 175 chr2L 7343342 7343358 chr2L 7350440 7350474 roo 6 7113 3.0 3.5 3.2 1.4 7132 chr2L 7343342 intron Wnt6 + chr2L 7346908 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-727 176 chr2L 7399307 7399334 chr2L 7399680 7399707 13 373 2.5 14.0 8.2 1.4 400 chr2L 7399307 intergenic not near genes chr2L 7399507 intergenic not near genes chr2L 7399707 intergenic not near genes chr2L_13_7395001 chr2L_7395001 RAL-727 177 chr2L 7405780 7405808 chr2L 7405860 7405872 7 75 5.0 4.5 4.8 1.2 92 chr2L 7405780 intron CG5177 + chr2L 7405826 intron CG5177 + chr2L 7405872 intron CG5177 + chr2L_7_7405001 chr2L_7405001 RAL-727 178 chr2L 7406955 7406960 chr2L 7407062 7407067 7 107 0.0 0.0 0.0 7.0 112 chr2L 7406955 intron CG5177 + chr2L 7407011 intron CG5177 + chr2L 7407067 intron CG5177 + chr2L_7_7405001 chr2L_7405001 RAL-727 179 chr2L 7502740 7502750 chr2L 7502816 7502826 7 74 10.5 8.0 9.2 0.7 86 chr2L 7502740 intron RapGAP1 - chr2L 7502783 intron RapGAP1 - chr2L 7502826 intron RapGAP1 - chr2L_7_7500001 chr2L_7500001 RAL-727 180 chr2L 7502751 7502765 chr2L 7502814 7502838 9 73 7.5 7.0 7.2 1.1 87 chr2L 7502751 intron RapGAP1 - chr2L 7502794 intron RapGAP1 - chr2L 7502838 intron RapGAP1 - chr2L_9_7500001 chr2L_7500001 RAL-727 181 chr2L 7579191 7579203 chr2L 7579382 7579393 BS 6 190 3.0 0.0 1.5 2.4 202 chr2L 7579191 intergenic RapGAP1 - chr2L 7579292 intergenic RapGAP1 - chr2L 7579393 intergenic RapGAP1 - chr2L_6_7575001 chr2L_7575001 RAL-727 182 chr2L 7638557 7638587 chr2L 7638633 7638663 6 74 2.0 2.0 2.0 2.0 106 chr2L 7638557 intergenic not near genes chr2L 7638610 intergenic not near genes chr2L 7638663 intergenic not near genes chr2L_6_7635001 chr2L_7635001 RAL-727 183 chr2L 7664619 7664649 chr2L 7664968 7664998 20 346 3.0 8.5 5.8 2.9 379 chr2L 7664619 intron Slob - chr2L 7664808 intron Slob - chr2L 7664998 intron Slob - chr2L_20_7660001 chr2L_7660001 RAL-727 184 chr2L 7867565 7867599 chr2L 7867659 7867693 19 94 5.0 4.5 4.8 3.3 128 chr2L 7867565 intron Proc - chr2L 7867629 intron Proc - chr2L 7867693 intron Proc - chr2L_19_7865001 chr2L_7865001 RAL-727 185 chr2L 7959040 7959060 chr2L 7960451 7960460 pogo 10 1410 8.5 0.0 4.2 1.9 1420 chr2L 7959040 intron Snoo - chr2L 7959750 intron Snoo - chr2L 7960460 intron Snoo - chr2L_10_7955001 chr2L_7955001 RAL-727 186 chr2L 7965665 7965677 chr2L 7965869 7965879 roo 4 204 1.0 3.5 2.2 1.2 214 chr2L 7965665 intron Snoo - chr2L 7965772 intron Snoo - chr2L 7965879 intron Snoo - chr2L_4_7965001 chr2L_7965001 RAL-727 187 chr2L 7977090 7977112 chr2L 7984066 7984088 297 14 6975 3.5 2.0 2.8 3.7 6998 chr2L 7977090 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_14_7980001 chr2L_7980001 RAL-727 188 chr2L 8003036 8003069 chr2L 8003118 8003151 14 82 1.5 6.0 3.8 2.9 115 chr2L 8003036 intron Wwox - chr2L 8003094 intron Wwox - chr2L 8003151 intron Wwox - chr2L_14_8000001 chr2L_8000001 RAL-727 189 chr2L 8013617 8013640 chr2L 8018820 8018825 copia 12 5202 9.0 0.0 4.5 2.2 5208 chr2L 8013617 intron Tg + chr2L 8016221 intron Tg + chr2L 8018825 intron Tg + chr2L_12_8015001 chr2L_8015001 RAL-727 190 chr2L 8018818 8018830 chr2L 8023595 8023614 Doc 6 4783 0.0 9.0 4.5 1.1 4796 chr2L 8018818 intron Tg + chr2L 8021216 intron Tg + chr2L 8023614 intron Tg + chr2L_6_8020001 chr2L_8020001 RAL-727 191 chr2L 8044105 8044131 chr2L 8044175 8044186 18 73 4.5 4.5 4.5 3.3 81 chr2L 8044105 intron CG7466 + chr2L 8044146 intron CG7466 + chr2L 8044186 intron CG7466 + chr2L_18_8040001 chr2L_8040001 RAL-727 192 chr2L 8167156 8167180 chr2L 8167234 8167268 5 85 4.5 2.0 3.2 1.2 112 chr2L 8167156 intron Piezo + chr2L 8167212 intron Piezo + chr2L 8167268 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-727 193 chr2L 8171275 8171301 chr2L 8171349 8171379 17 80 0.0 3.5 1.8 6.1 104 chr2L 8171275 intron Piezo + chr2L 8171327 intron Piezo + chr2L 8171379 intron Piezo + chr2L_17_8170001 chr2L_8170001 RAL-727 194 chr2L 8184920 8184954 chr2L 8185010 8185045 16 90 5.5 3.0 4.2 3.1 125 chr2L 8184920 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185045 intron Piezo + chr2L_16_8180001 chr2L_8180001 RAL-727 195 chr2L 8232020 8232023 chr2L 8232098 8232101 4 78 0.0 8.5 4.2 0.8 81 chr2L 8232020 intron Pvr - chr2L 8232060 intron Pvr - chr2L 8232101 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-727 196 chr2L 8244732 8244748 chr2L 8244854 8244870 8 120 0.5 2.5 1.5 3.2 138 chr2L 8244732 intron CG8086 - chr2L 8244801 intron CG8086 - chr2L 8244870 intron CG8086 - chr2L_8_8240001 chr2L_8240001 RAL-727 197 chr2L 8286295 8286315 chr2L 8286381 8286397 7 86 3.5 8.5 6.0 1.0 102 chr2L 8286295 intron Btk29A - chr2L 8286346 intron Btk29A - chr2L 8286397 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-727 198 chr2L 8336937 8336960 chr2L 8337016 8337039 5 78 0.0 5.5 2.8 1.3 102 chr2L 8336937 intergenic not near genes chr2L 8336988 intergenic not near genes chr2L 8337039 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-727 199 chr2L 8452420 8452432 chr2L 8461590 8461603 roo 4 9171 10.5 7.5 9.0 0.4 9183 chr2L 8452420 intron fu12 - chr2L 8457012 intron fu12 - chr2L 8461603 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-727 200 chr2L 8452433 8452452 chr2L 8461589 8461623 roo 12 9168 5.5 6.5 6.0 1.7 9190 chr2L 8452433 intron fu12 - chr2L 8457028 intron fu12 - chr2L 8461623 intron fu12 - chr2L_12_8455001 chr2L_8455001 RAL-727 201 chr2L 8498207 8498238 chr2L 8498288 8498316 14 80 6.0 4.0 5.0 2.3 109 chr2L 8498207 intron Dh31 - chr2L 8498262 intron Dh31 - chr2L 8498316 intron Dh31 - chr2L_14_8495001 chr2L_8495001 RAL-727 202 chr2L 8508989 8509003 chr2L 8509091 8509105 5 102 0.0 4.5 2.2 1.6 116 chr2L 8508989 intergenic CG13096 - chr2L 8509047 intergenic CG13096 - chr2L 8509105 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-727 203 chr2L 8594463 8594497 chr2L 8601517 8601550 297 9 7052 5.5 3.5 4.5 1.6 7087 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598006 intron Sema-1a + chr2L 8601550 intron Sema-1a + chr2L_9_8595001 chr2L_8595001 RAL-727 204 chr2L 8704833 8704843 chr2L 8705095 8705105 8 262 11.5 5.0 8.2 0.9 272 chr2L 8704833 intron,5` UTR Hnf4 -,CR44992 + chr2L 8704969 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705105 intron,5` UTR Hnf4 -,CR44992 + chr2L_8_8700001 chr2L_8700001 RAL-727 205 chr2L 8704846 8704861 chr2L 8705094 8705123 8 258 5.5 5.0 5.2 1.3 277 chr2L 8704846 intron,5` UTR Hnf4 -,CR44992 + chr2L 8704984 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705123 intron,5` UTR Hnf4 -,CR44992 + chr2L_8_8700001 chr2L_8700001 RAL-727 206 chr2L 8723115 8723148 chr2L 8731492 8731525 Tirant 18 8377 2.5 3.0 2.8 4.7 8410 chr2L 8723115 intron raw - chr2L 8727320 intron raw - chr2L 8731525 intron raw - chr2L_18_8725001 chr2L_8725001 RAL-727 207 chr2L 8799799 8799829 chr2L 8799915 8799945 15 114 5.0 4.0 4.5 2.7 146 chr2L 8799799 intergenic not near genes chr2L 8799872 intergenic not near genes chr2L 8799945 intergenic not near genes chr2L_15_8795001 chr2L_8795001 RAL-727 208 chr2L 8815743 8815773 chr2L 8815824 8815836 8 77 4.0 7.0 5.5 1.2 93 chr2L 8815743 intergenic not near genes chr2L 8815790 intergenic not near genes chr2L 8815836 intergenic not near genes chr2L_8_8815001 chr2L_8815001 RAL-727 209 chr2L 8939664 8939701 chr2L 8939744 8939781 11 80 4.5 6.0 5.2 1.8 117 chr2L 8939664 3` UTR Tsp29Fb + chr2L 8939722 3` UTR Tsp29Fb + chr2L 8939781 intergenic CG9510 -,Tsp29Fb + chr2L_11_8935001 chr2L_8935001 RAL-727 210 chr2L 8956231 8956241 chr2L 8956308 8956318 5 77 1.0 0.5 0.8 2.8 87 chr2L 8956231 intron CG31886 - chr2L 8956274 intron CG31886 - chr2L 8956318 intron CG31886 - chr2L_5_8955001 chr2L_8955001 RAL-727 211 chr2L 9000277 9000283 chr2L 9007787 9007792 roo 5 7510 14.5 0.0 7.2 0.6 7515 chr2L 9000277 intergenic Try29F + chr2L 9004034 intergenic not near genes chr2L 9007792 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-727 212 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 18.0 32.0 25.0 0.3 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-727 213 chr2L 9217968 9218004 chr2L 9222755 9222789 Doc 20 4785 4.5 6.5 5.5 3.1 4821 chr2L 9217968 intron tai + chr2L 9220378 intron tai + chr2L 9222789 intron tai + chr2L_20_9220001 chr2L_9220001 RAL-727 214 chr2L 9225850 9225880 chr2L 9225940 9225970 9 90 3.5 2.5 3.0 2.2 120 chr2L 9225850 intron tai + chr2L 9225910 intron tai + chr2L 9225970 intron tai + chr2L_9_9225001 chr2L_9225001 RAL-727 215 chr2L 9251146 9251179 chr2L 9251243 9251271 15 92 7.0 10.0 8.5 1.6 125 chr2L 9251146 intergenic aust -,borr - chr2L 9251208 intergenic aust -,borr - chr2L 9251271 intergenic borr -,aust - chr2L_15_9250001 chr2L_9250001 RAL-727 216 chr2L 9280009 9280022 chr2L 9280103 9280116 7 94 0.0 8.0 4.0 1.4 107 chr2L 9280009 intron Ggamma30A + chr2L 9280062 intron Ggamma30A + chr2L 9280116 intron Ggamma30A + chr2L_7_9280001 chr2L_9280001 RAL-727 217 chr2L 9287324 9287356 chr2L 9287421 9287453 18 93 4.0 4.0 4.0 3.6 129 chr2L 9287324 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287453 intron Ggamma30A + chr2L_18_9285001 chr2L_9285001 RAL-727 218 chr2L 9303516 9303529 chr2L 9303596 9303609 7 80 9.0 8.5 8.8 0.7 93 chr2L 9303516 intergenic not near genes chr2L 9303562 intergenic not near genes chr2L 9303609 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-727 219 chr2L 9303530 9303540 chr2L 9303594 9303598 4 70 8.0 8.0 8.0 0.4 68 chr2L 9303530 intergenic not near genes chr2L 9303564 intergenic not near genes chr2L 9303598 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-727 220 chr2L 9304510 9304516 chr2L 9304588 9304595 5 79 2.5 7.5 5.0 0.8 85 chr2L 9304510 3` UTR CR42844 - chr2L 9304552 3` UTR CR42844 - chr2L 9304595 3` UTR CR42844 - chr2L_5_9300001 chr2L_9300001 RAL-727 221 chr2L 9393496 9393531 chr2L 9396463 9396498 jockey 28 2966 5.5 11.5 8.5 2.9 3002 chr2L 9393496 intron Shawl - chr2L 9394997 intron Shawl - chr2L 9396498 intron Shawl - chr2L_28_9390001 chr2L_9390001 RAL-727 222 chr2L 9441322 9441352 chr2L 9441426 9441456 10 104 2.5 5.5 4.0 2.0 134 chr2L 9441322 intron numb + chr2L 9441389 intron numb + chr2L 9441456 intron numb + chr2L_10_9440001 chr2L_9440001 RAL-727 223 chr2L 9451060 9451068 chr2L 9451154 9451162 5 94 0.0 5.0 2.5 1.4 102 chr2L 9451060 intron numb + chr2L 9451111 intron numb + chr2L 9451162 intron numb + chr2L_5_9450001 chr2L_9450001 RAL-727 224 chr2L 9454976 9455003 chr2L 9455078 9455105 6 101 4.5 5.0 4.8 1.0 129 chr2L 9454976 intron numb + chr2L 9455040 intron numb + chr2L 9455105 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-727 225 chr2L 9456933 9456956 chr2L 9457014 9457032 11 78 6.0 10.5 8.2 1.2 99 chr2L 9456933 intron numb + chr2L 9456982 intron numb + chr2L 9457032 intron numb + chr2L_11_9455001 chr2L_9455001 RAL-727 226 chr2L 9474795 9474810 chr2L 9474889 9474904 8 94 0.5 7.0 3.8 1.7 109 chr2L 9474795 intergenic not near genes chr2L 9474850 intergenic not near genes chr2L 9474904 intergenic not near genes chr2L_8_9470001 chr2L_9470001 RAL-727 227 chr2L 9490528 9490552 chr2L 9490608 9490629 11 77 3.5 11.5 7.5 1.3 101 chr2L 9490528 intergenic not near genes chr2L 9490578 intergenic not near genes chr2L 9490629 intergenic not near genes chr2L_11_9490001 chr2L_9490001 RAL-727 228 chr2L 9506363 9506368 chr2L 9506445 9506450 5 82 1.0 1.0 1.0 2.5 87 chr2L 9506363 intron CG33298 + chr2L 9506406 intron CG33298 + chr2L 9506450 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-727 229 chr2L 9619498 9619519 chr2L 9619835 9619856 13 337 3.5 5.0 4.2 2.5 358 chr2L 9619498 intron GlcAT-S + chr2L 9619677 intron GlcAT-S + chr2L 9619856 intron GlcAT-S + chr2L_13_9615001 chr2L_9615001 RAL-727 230 chr2L 9716449 9716485 chr2L 9716537 9716573 18 86 7.5 6.5 7.0 2.2 124 chr2L 9716449 3` UTR Nckx30C - chr2L 9716511 3` UTR Nckx30C - chr2L 9716573 3` UTR Nckx30C - chr2L_18_9715001 chr2L_9715001 RAL-727 231 chr2L 9730975 9731006 chr2L 9731058 9731089 14 82 6.0 9.5 7.8 1.6 114 chr2L 9730975 intron Nckx30C - chr2L 9731032 intron Nckx30C - chr2L 9731089 intron Nckx30C - chr2L_14_9730001 chr2L_9730001 RAL-727 232 chr2L 9837433 9837447 chr2L 9837511 9837525 7 78 3.0 4.0 3.5 1.6 92 chr2L 9837433 intron nAChRalpha6 - chr2L 9837479 intron nAChRalpha6 - chr2L 9837525 intron nAChRalpha6 - chr2L_7_9835001 chr2L_9835001 RAL-727 233 chr2L 9843203 9843233 chr2L 9843284 9843299 18 78 0.0 0.0 0.0 18.0 96 chr2L 9843203 intron nAChRalpha6 - chr2L 9843251 intron nAChRalpha6 - chr2L 9843299 intron nAChRalpha6 - chr2L_18_9840001 chr2L_9840001 RAL-727 234 chr2L 9861616 9861645 chr2L 9861803 9861832 6 186 6.0 5.0 5.5 0.9 216 chr2L 9861616 intron nAChRalpha6 - chr2L 9861724 intron nAChRalpha6 - chr2L 9861832 intron nAChRalpha6 - chr2L_6_9860001 chr2L_9860001 RAL-727 235 chr2L 9881005 9881038 chr2L 9881083 9881116 21 78 7.0 5.0 6.0 3.0 111 chr2L 9881005 intron nAChRalpha6 - chr2L 9881060 intron nAChRalpha6 - chr2L 9881116 intron nAChRalpha6 - chr2L_21_9880001 chr2L_9880001 RAL-727 236 chr2L 9973740 9973750 chr2L 9980849 9980869 HMS-Beagle 6 7116 7.0 7.5 7.2 0.7 7129 chr2L 9973740 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980869 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-727 237 chr2L 9986356 9986366 chr2L 9986451 9986454 4 91 4.0 4.5 4.2 0.8 98 chr2L 9986356 intron bib + chr2L 9986405 intron bib + chr2L 9986454 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-727 238 chr2L 9994725 9994734 chr2L 9994831 9994840 6 105 2.5 4.0 3.2 1.4 115 chr2L 9994725 exon bib + chr2L 9994782 3` UTR bib + chr2L 9994840 3` UTR bib + chr2L_6_9990001 chr2L_9990001 RAL-727 239 chr2L 9994739 9994752 chr2L 9994830 9994858 10 102 0.5 3.0 1.8 3.6 119 chr2L 9994739 exon bib + chr2L 9994798 3` UTR bib + chr2L 9994858 3` UTR bib + chr2L_10_9990001 chr2L_9990001 RAL-727 240 chr2L 10095629 10095662 chr2L 10095709 10095742 16 79 2.0 4.5 3.2 3.8 113 chr2L 10095629 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095742 intron CG44153 - chr2L_16_10095001 chr2L_10095001 RAL-727 241 chr2L 10103378 10103404 chr2L 10103477 10103504 5 97 6.0 1.5 3.8 1.0 126 chr2L 10103378 intron,intron CG44153 -,CG34109 + chr2L 10103441 intron,intron CG44153 -,CG34109 + chr2L 10103504 intron,intron CG44153 -,CG34109 + chr2L_5_10100001 chr2L_10100001 RAL-727 242 chr2L 10138189 10138194 chr2L 10143435 10143439 Rt1c 4 5246 3.5 13.5 8.5 0.4 5250 chr2L 10138189 intron CG44153 - chr2L 10140814 intron CG44153 - chr2L 10143439 intron CG44153 - chr2L_4_10140001 chr2L_10140001 RAL-727 243 chr2L 10156331 10156355 chr2L 10163791 10163808 blood 8 7464 8.0 3.5 5.8 1.2 7477 chr2L 10156331 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163808 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-727 244 chr2L 10204502 10204530 chr2L 10204585 10204613 7 83 1.5 2.5 2.0 2.3 111 chr2L 10204502 intergenic CG34159 -,CG5734 - chr2L 10204558 intergenic CG5734 -,CG34159 - chr2L 10204613 intergenic CG5734 -,CG34159 - chr2L_7_10200001 chr2L_10200001 RAL-727 245 chr2L 10209848 10209858 chr2L 10209925 10209935 6 77 4.0 0.0 2.0 2.0 87 chr2L 10209848 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209892 3` UTR CG5727 - chr2L 10209935 3` UTR CG5727 - chr2L_6_10205001 chr2L_10205001 RAL-727 246 chr2L 10336052 10336088 chr2L 10336150 10336186 22 94 3.0 6.5 4.8 3.8 134 chr2L 10336052 exon GATAd + chr2L 10336119 exon GATAd + chr2L 10336186 exon GATAd + chr2L_22_10335001 chr2L_10335001 RAL-727 247 chr2L 10348396 10348409 chr2L 10348479 10348492 10 83 0.0 0.5 0.2 8.3 96 chr2L 10348396 intron CG34367 - chr2L 10348444 intron CG34367 - chr2L 10348492 intron CG34367 - chr2L_10_10345001 chr2L_10345001 RAL-727 248 chr2L 10519518 10519525 chr2L 10519766 10519774 6 249 2.0 0.5 1.2 2.7 256 chr2L 10519518 intergenic Lrr47 + chr2L 10519646 intergenic Lrr47 + chr2L 10519774 intergenic not near genes chr2L_6_10515001 chr2L_10515001 RAL-727 249 chr2L 10563915 10563942 chr2L 10564004 10564021 5 80 4.5 3.0 3.8 1.0 106 chr2L 10563915 intron Trim9 + chr2L 10563968 intron Trim9 + chr2L 10564021 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-727 250 chr2L 10592858 10592871 chr2L 10600515 10600531 opus 7 7661 2.5 9.5 6.0 1.0 7673 chr2L 10592858 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600531 intron Trim9 + chr2L_7_10595001 chr2L_10595001 RAL-727 251 chr2L 10640643 10640671 chr2L 10640732 10640760 22 86 5.0 7.0 6.0 3.1 117 chr2L 10640643 exon CG31872 + chr2L 10640702 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_22_10640001 chr2L_10640001 RAL-727 252 chr2L 10647598 10647632 chr2L 10647723 10647757 10 125 8.0 12.5 10.2 0.9 159 chr2L 10647598 exon CG17097 + chr2L 10647678 exon CG17097 + chr2L 10647757 exon CG17097 + chr2L_10_10645001 chr2L_10645001 RAL-727 253 chr2L 10650026 10650032 chr2L 10650106 10650112 4 80 4.5 4.5 4.5 0.7 86 chr2L 10650026 exon CG17097 + chr2L 10650069 3` UTR CG17097 + chr2L 10650112 3` UTR CG17097 + chr2L_4_10650001 chr2L_10650001 RAL-727 254 chr2L 10688540 10688574 chr2L 10688616 10688650 10 76 0.5 2.0 1.2 4.5 110 chr2L 10688540 intergenic CG7294 - chr2L 10688595 intergenic CG7294 - chr2L 10688650 intergenic CG7294 - chr2L_10_10685001 chr2L_10685001 RAL-727 255 chr2L 10702660 10702695 chr2L 10703418 10703453 17 757 34.5 29.0 31.8 0.5 793 chr2L 10702660 exon Lip2 - chr2L 10703056 intron Lip2 - chr2L 10703453 intron Lip2 - chr2L_17_10700001 chr2L_10700001 RAL-727 256 chr2L 10705933 10705953 chr2L 10706009 10706029 6 74 5.0 5.0 5.0 1.0 96 chr2L 10705933 intron Lip2 - chr2L 10705981 intron Lip2 - chr2L 10706029 intron Lip2 - chr2L_6_10705001 chr2L_10705001 RAL-727 257 chr2L 10787998 10788029 chr2L 10788074 10788105 7 71 0.0 5.0 2.5 2.0 107 chr2L 10787998 intron CG31869 - chr2L 10788052 intron CG31869 - chr2L 10788105 intron CG31869 - chr2L_7_10785001 chr2L_10785001 RAL-727 258 chr2L 10791867 10791890 chr2L 10791947 10791970 8 78 3.5 8.0 5.8 1.2 103 chr2L 10791867 intron CG31869 - chr2L 10791918 intron CG31869 - chr2L 10791970 intron CG31869 - chr2L_8_10790001 chr2L_10790001 RAL-727 259 chr2L 10813016 10813051 chr2L 10813103 10813138 14 87 2.0 5.5 3.8 2.9 122 chr2L 10813016 intron Nos - chr2L 10813077 intron Nos - chr2L 10813138 intron Nos - chr2L_14_10810001 chr2L_10810001 RAL-727 260 chr2L 10836335 10836361 chr2L 10836416 10836442 10 81 2.0 6.0 4.0 2.0 107 chr2L 10836335 intron Nos - chr2L 10836388 intron Nos - chr2L 10836442 intron Nos - chr2L_10_10835001 chr2L_10835001 RAL-727 261 chr2L 10852174 10852181 chr2L 10852263 10852270 5 89 8.5 10.5 9.5 0.5 96 chr2L 10852174 intron CG43129 + chr2L 10852222 intron CG43129 + chr2L 10852270 intron CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-727 262 chr2L 10862856 10862882 chr2L 10864452 10864491 Rt1c 9 1608 2.5 3.5 3.0 2.2 1635 chr2L 10862856 3` UTR CR43807 - chr2L 10863674 intron CR43807 - chr2L 10864491 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-727 263 chr2L 10891454 10891488 chr2L 10891648 10891682 18 192 3.0 4.0 3.5 4.0 228 chr2L 10891454 intergenic not near genes chr2L 10891568 intergenic not near genes chr2L 10891682 intergenic not near genes chr2L_18_10890001 chr2L_10890001 RAL-727 264 chr2L 10905616 10905630 chr2L 10905703 10905717 6 87 0.0 6.0 3.0 1.5 101 chr2L 10905616 intergenic not near genes chr2L 10905666 intergenic not near genes chr2L 10905717 intergenic not near genes chr2L_6_10905001 chr2L_10905001 RAL-727 265 chr2L 10927516 10927533 chr2L 10927596 10927604 5 79 10.5 6.5 8.5 0.5 88 chr2L 10927516 intron dpr2 - chr2L 10927560 intron dpr2 - chr2L 10927604 intron dpr2 - chr2L_5_10925001 chr2L_10925001 RAL-727 266 chr2L 10936505 10936538 chr2L 10936639 10936673 10 131 4.0 2.0 3.0 2.5 168 chr2L 10936505 intron dpr2 - chr2L 10936589 intron dpr2 - chr2L 10936673 intron,5` UTR dpr2 -,CG14072 + chr2L_10_10935001 chr2L_10935001 RAL-727 267 chr2L 10946949 10946974 chr2L 10956164 10956189 roo 9 9212 4.0 3.5 3.8 1.9 9240 chr2L 10946949 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956189 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-727 268 chr2L 11130507 11130529 chr2L 11130597 11130619 11 90 2.5 4.0 3.2 2.6 112 chr2L 11130507 5` UTR RfC38 - chr2L 11130563 5` UTR RfC38 - chr2L 11130619 5` UTR RfC38 - chr2L_11_11130001 chr2L_11130001 RAL-727 269 chr2L 11147805 11147829 chr2L 11148046 11148063 7 242 4.0 1.0 2.5 2.0 258 chr2L 11147805 intron Gyc32E - chr2L 11147934 intron Gyc32E - chr2L 11148063 intron Gyc32E - chr2L_7_11145001 chr2L_11145001 RAL-727 270 chr2L 11174581 11174659 chr2L 11174649 11174736 6 70 0.0 0.5 0.2 5.0 155 chr2L 11174581 intron Ca-beta - chr2L 11174658 intron Ca-beta - chr2L 11174736 intron Ca-beta - chr2L_6_11170001 chr2L_11170001 RAL-727 271 chr2L 11183785 11183809 chr2L 11183881 11183905 13 96 3.5 7.0 5.2 2.1 120 chr2L 11183785 intron Ca-beta - chr2L 11183845 intron Ca-beta - chr2L 11183905 intron Ca-beta - chr2L_13_11180001 chr2L_11180001 RAL-727 272 chr2L 11224057 11224091 chr2L 11224168 11224202 17 110 5.0 1.0 3.0 4.2 145 chr2L 11224057 intron ab + chr2L 11224130 intron ab + chr2L 11224202 intron ab + chr2L_17_11220001 chr2L_11220001 RAL-727 273 chr2L 11292388 11292399 chr2L 11292470 11292481 5 82 6.5 9.5 8.0 0.6 93 chr2L 11292388 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292481 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-727 274 chr2L 11292402 11292408 chr2L 11292458 11292490 5 77 3.5 5.0 4.2 1.0 88 chr2L 11292402 intergenic not near genes chr2L 11292446 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-727 275 chr2L 11309004 11309021 chr2L 11309112 11309129 15 107 7.5 1.0 4.2 2.9 125 chr2L 11309004 intergenic not near genes chr2L 11309066 intergenic not near genes chr2L 11309129 intergenic not near genes chr2L_15_11305001 chr2L_11305001 RAL-727 276 chr2L 11380614 11380630 chr2L 11380688 11380707 5 76 3.0 4.5 3.8 1.0 93 chr2L 11380614 intergenic not near genes chr2L 11380660 intergenic not near genes chr2L 11380707 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-727 277 chr2L 11404782 11404811 chr2L 11404858 11404887 16 75 1.0 1.0 1.0 8.0 105 chr2L 11404782 intergenic not near genes chr2L 11404834 intergenic not near genes chr2L 11404887 intergenic not near genes chr2L_16_11400001 chr2L_11400001 RAL-727 278 chr2L 11418661 11418686 chr2L 11418740 11418754 14 78 2.0 4.0 3.0 3.5 93 chr2L 11418661 intergenic not near genes chr2L 11418708 intergenic not near genes chr2L 11418754 intergenic not near genes chr2L_14_11415001 chr2L_11415001 RAL-727 279 chr2L 11444271 11444285 chr2L 11444351 11444365 10 80 1.0 3.0 2.0 3.3 94 chr2L 11444271 intron salm - chr2L 11444318 intron salm - chr2L 11444365 intron salm - chr2L_10_11440001 chr2L_11440001 RAL-727 280 chr2L 11450123 11450156 chr2L 11450209 11450228 9 77 0.0 4.5 2.2 2.8 105 chr2L 11450123 intergenic not near genes chr2L 11450176 intergenic not near genes chr2L 11450228 intergenic not near genes chr2L_9_11450001 chr2L_11450001 RAL-727 281 chr2L 11540581 11540613 chr2L 11547983 11548015 Tabor 12 7402 3.5 5.0 4.2 2.3 7434 chr2L 11540581 intergenic not near genes chr2L 11544298 intergenic not near genes chr2L 11548015 intergenic not near genes chr2L_12_11540001 chr2L_11540001 RAL-727 282 chr2L 11563635 11563667 chr2L 11568839 11568871 copia 20 5203 3.0 5.5 4.2 3.8 5236 chr2L 11563635 intergenic not near genes chr2L 11566253 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_20_11565001 chr2L_11565001 RAL-727 283 chr2L 11590935 11590959 chr2L 11591023 11591047 7 88 3.0 1.0 2.0 2.3 112 chr2L 11590935 intron kek2 + chr2L 11590991 intron kek2 + chr2L 11591047 intron kek2 + chr2L_7_11590001 chr2L_11590001 RAL-727 284 chr2L 11610546 11610572 chr2L 11610625 11610649 6 76 6.5 3.0 4.8 1.0 103 chr2L 11610546 intron,3` UTR kek2 +,spag4 - chr2L 11610598 intron,3` UTR kek2 +,spag4 - chr2L 11610649 intron,3` UTR kek2 +,spag4 - chr2L_6_11610001 chr2L_11610001 RAL-727 285 chr2L 11625465 11625502 chr2L 11625575 11625605 4 104 2.5 3.0 2.8 1.1 140 chr2L 11625465 3` UTR kek2 + chr2L 11625535 3` UTR kek2 + chr2L 11625605 3` UTR kek2 + chr2L_4_11625001 chr2L_11625001 RAL-727 286 chr2L 11672141 11672167 chr2L 11672248 11672274 7 107 3.0 1.0 2.0 2.3 133 chr2L 11672141 intergenic not near genes chr2L 11672208 intergenic not near genes chr2L 11672274 intergenic not near genes chr2L_7_11670001 chr2L_11670001 RAL-727 287 chr2L 11713511 11713538 chr2L 11720979 11721001 blood 12 7467 4.5 8.5 6.5 1.6 7490 chr2L 11713511 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721001 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-727 288 chr2L 11752865 11752893 chr2L 11753155 11753183 12 288 2.5 8.0 5.2 1.9 318 chr2L 11752865 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753183 3` UTR CG42470 - chr2L_12_11750001 chr2L_11750001 RAL-727 289 chr2L 11770599 11770622 chr2L 11770685 11770709 10 85 9.5 4.0 6.8 1.3 110 chr2L 11770599 intergenic not near genes chr2L 11770654 intergenic not near genes chr2L 11770709 intergenic not near genes chr2L_10_11770001 chr2L_11770001 RAL-727 290 chr2L 11786907 11786942 chr2L 11787086 11787106 18 177 3.5 1.5 2.5 5.1 199 chr2L 11786907 intergenic not near genes chr2L 11787006 intergenic not near genes chr2L 11787106 intergenic not near genes chr2L_18_11785001 chr2L_11785001 RAL-727 291 chr2L 11825706 11825712 chr2L 11825785 11825790 4 79 5.5 0.0 2.8 1.1 84 chr2L 11825706 intron Pde1c - chr2L 11825748 intron Pde1c - chr2L 11825790 intron Pde1c - chr2L_4_11825001 chr2L_11825001 RAL-727 292 chr2L 11841351 11841366 chr2L 11841448 11841463 8 97 2.5 0.0 1.2 3.6 112 chr2L 11841351 intron Pde1c - chr2L 11841407 intron Pde1c - chr2L 11841463 intron Pde1c - chr2L_8_11840001 chr2L_11840001 RAL-727 293 chr2L 11962144 11962184 chr2L 11962226 11962266 21 81 4.5 4.5 4.5 3.8 122 chr2L 11962144 intron CR43314 - chr2L 11962205 intron CR43314 - chr2L 11962266 intron CR43314 - chr2L_21_11960001 chr2L_11960001 RAL-727 294 chr2L 12031392 12031418 chr2L 12031473 12031499 15 81 3.0 5.5 4.2 2.9 107 chr2L 12031392 intron dmGlut + chr2L 12031446 intron dmGlut + chr2L 12031499 intron dmGlut + chr2L_15_12030001 chr2L_12030001 RAL-727 295 chr2L 12067328 12067361 chr2L 12074380 12074413 297 16 7051 6.5 3.5 5.0 2.7 7085 chr2L 12067328 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074413 intergenic not near genes chr2L_16_12070001 chr2L_12070001 RAL-727 296 chr2L 12132733 12132748 chr2L 12132819 12132834 4 86 2.0 6.0 4.0 0.8 101 chr2L 12132733 intron rho-6 - chr2L 12132784 intron rho-6 - chr2L 12132834 intron rho-6 - chr2L_4_12130001 chr2L_12130001 RAL-727 297 chr2L 12203391 12203408 chr2L 12203502 12203519 9 111 5.5 4.5 5.0 1.5 128 chr2L 12203391 intron aret + chr2L 12203455 intron aret + chr2L 12203519 intron aret + chr2L_9_12200001 chr2L_12200001 RAL-727 298 chr2L 12254028 12254049 chr2L 12254120 12254135 9 91 3.0 0.0 1.5 3.6 107 chr2L 12254028 intron aret + chr2L 12254082 intron aret + chr2L 12254135 intron aret + chr2L_9_12250001 chr2L_12250001 RAL-727 299 chr2L 12272165 12272190 chr2L 12272238 12272266 9 75 1.0 3.0 2.0 3.0 101 chr2L 12272165 intron aret + chr2L 12272216 intron aret + chr2L 12272266 intron aret + chr2L_9_12270001 chr2L_12270001 RAL-727 300 chr2L 12363189 12363198 chr2L 12363276 12363286 5 88 0.0 7.5 3.8 1.0 97 chr2L 12363189 intron bru-2 + chr2L 12363238 intron bru-2 + chr2L 12363286 intron bru-2 + chr2L_5_12360001 chr2L_12360001 RAL-727 301 chr2L 12366863 12366891 chr2L 12366949 12366977 13 86 5.0 3.5 4.2 2.5 114 chr2L 12366863 intron bru-2 + chr2L 12366920 intron bru-2 + chr2L 12366977 intron bru-2 + chr2L_13_12365001 chr2L_12365001 RAL-727 302 chr2L 12374994 12374994 chr2L 13098602 13098623 4 723624 16.5 19.0 17.8 0.2 723629 chr2L 12374994 intron bru-2 + chr2L 12736808 intron MRP + chr2L 13098623 intergenic not near genes chr2L_4_12735001 chr2L_12735001 RAL-727 303 chr2L 12481381 12481406 chr2L 12481463 12481488 9 82 5.5 4.5 5.0 1.5 107 chr2L 12481381 intron bun - chr2L 12481434 intron bun - chr2L 12481488 intron bun - chr2L_9_12480001 chr2L_12480001 RAL-727 304 chr2L 12487886 12487917 chr2L 12487967 12487998 21 80 7.0 11.0 9.0 2.1 112 chr2L 12487886 intron bun - chr2L 12487942 intron bun - chr2L 12487998 intron bun - chr2L_21_12485001 chr2L_12485001 RAL-727 305 chr2L 12490085 12490111 chr2L 12490224 12490250 10 139 1.5 3.5 2.5 2.9 165 chr2L 12490085 intron bun - chr2L 12490168 intron bun - chr2L 12490250 intron bun - chr2L_10_12490001 chr2L_12490001 RAL-727 306 chr2L 12491498 12491508 chr2L 12491599 12491609 4 101 3.5 1.5 2.5 1.1 111 chr2L 12491498 intron bun - chr2L 12491554 intron bun - chr2L 12491609 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-727 307 chr2L 12496052 12496066 chr2L 12496412 12496426 4 360 10.0 2.5 6.2 0.6 374 chr2L 12496052 intron bun - chr2L 12496239 intron bun - chr2L 12496426 intron bun - chr2L_4_12495001 chr2L_12495001 RAL-727 308 chr2L 12507283 12507287 chr2L 12507372 12507376 4 89 6.5 0.0 3.2 1.0 93 chr2L 12507283 intron bun - chr2L 12507330 intron bun - chr2L 12507376 intron bun - chr2L_4_12505001 chr2L_12505001 RAL-727 309 chr2L 12522304 12522340 chr2L 12522380 12522416 17 74 4.5 3.5 4.0 3.4 112 chr2L 12522304 intron bun - chr2L 12522360 intron bun - chr2L 12522416 intron bun - chr2L_17_12520001 chr2L_12520001 RAL-727 310 chr2L 12529242 12529445 chr2L 12529375 12529521 28 97 3.5 2.5 3.0 7.0 279 chr2L 12529242 intron bun - chr2L 12529382 intron bun - chr2L 12529521 intron bun - chr2L_28_12525001 chr2L_12525001 RAL-727 311 chr2L 12558323 12558339 chr2L 12565452 12565462 HMS-Beagle 6 7128 6.5 3.0 4.8 1.0 7139 chr2L 12558323 intergenic not near genes chr2L 12561892 intergenic not near genes chr2L 12565462 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-727 312 chr2L 12558343 12558349 chr2L 12565447 12565465 HMS-Beagle 8 7122 5.5 1.5 3.5 1.8 7122 chr2L 12558343 intergenic not near genes chr2L 12561904 intergenic not near genes chr2L 12565465 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-727 313 chr2L 12728917 12728947 chr2L 12729161 12729191 pogo 20 244 4.0 6.0 5.0 3.3 274 chr2L 12728917 intron MRP + chr2L 12729054 intron MRP + chr2L 12729191 exon MRP + chr2L_20_12725001 chr2L_12725001 RAL-727 314 chr2L 12731062 12731082 chr2L 12735828 12735829 F-element 4 4762 5.5 3.5 4.5 0.7 4767 chr2L 12731062 intron MRP + chr2L 12733446 intron MRP + chr2L 12735829 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-727 315 chr2L 12739175 12739205 chr2L 12743954 12743986 Doc 11 4781 2.0 2.5 2.2 3.4 4811 chr2L 12739175 exon MRP + chr2L 12741580 intron MRP + chr2L 12743986 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-727 316 chr2L 12759207 12759237 chr2L 12759302 12759332 19 93 3.0 8.5 5.8 2.8 125 chr2L 12759207 intergenic not near genes chr2L 12759270 intergenic not near genes chr2L 12759332 intergenic not near genes chr2L_19_12755001 chr2L_12755001 RAL-727 317 chr2L 12763165 12763200 chr2L 12763256 12763291 14 88 2.5 5.5 4.0 2.8 126 chr2L 12763165 intergenic not near genes chr2L 12763228 intergenic not near genes chr2L 12763291 intergenic not near genes chr2L_14_12760001 chr2L_12760001 RAL-727 318 chr2L 12763866 12763872 chr2L 12764066 12764072 BS 5 200 0.0 6.0 3.0 1.2 206 chr2L 12763866 intergenic not near genes chr2L 12763969 intergenic not near genes chr2L 12764072 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-727 319 chr2L 12766760 12766777 chr2L 12766838 12766855 11 78 4.0 3.0 3.5 2.4 95 chr2L 12766760 intergenic not near genes chr2L 12766808 intergenic not near genes chr2L 12766855 intergenic not near genes chr2L_11_12765001 chr2L_12765001 RAL-727 320 chr2L 12781798 12781813 chr2L 12789247 12789253 Quasimodo 6 7448 6.0 7.0 6.5 0.8 7455 chr2L 12781798 intergenic not near genes chr2L 12785526 intergenic not near genes chr2L 12789253 intergenic not near genes chr2L_6_12785001 chr2L_12785001 RAL-727 321 chr2L 12791605 12791633 chr2L 12795280 12795308 F-element 10 3673 6.0 7.0 6.5 1.3 3703 chr2L 12791605 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_10_12790001 chr2L_12790001 RAL-727 322 chr2L 12835559 12835581 chr2L 12835662 12835690 6 107 2.0 3.0 2.5 1.7 131 chr2L 12835559 intergenic not near genes chr2L 12835624 intergenic not near genes chr2L 12835690 intergenic not near genes chr2L_6_12835001 chr2L_12835001 RAL-727 323 chr2L 12861694 12861729 chr2L 12863161 12863196 hobo 10 1466 2.0 3.0 2.5 2.9 1502 chr2L 12861694 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-727 324 chr2L 12933851 12933883 chr2L 12941318 12941336 blood 11 7466 4.0 5.0 4.5 2.0 7485 chr2L 12933851 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941336 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-727 325 chr2L 12990022 12990043 chr2L 12990921 12990924 6 894 3.5 5.0 4.2 1.2 902 chr2L 12990022 intergenic not near genes chr2L 12990473 intergenic not near genes chr2L 12990924 intergenic not near genes chr2L_6_12990001 chr2L_12990001 RAL-727 326 chr2L 13036243 13036275 chr2L 13036485 13036517 X-element 14 241 2.5 10.0 6.2 1.9 274 chr2L 13036243 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_14_13035001 chr2L_13035001 RAL-727 327 chr2L 13093854 13093865 chr2L 13093932 13093943 5 78 3.0 4.5 3.8 1.0 89 chr2L 13093854 intergenic not near genes chr2L 13093898 intergenic not near genes chr2L 13093943 intergenic not near genes chr2L_5_13090001 chr2L_13090001 RAL-727 328 chr2L 13122405 13122425 chr2L 13122517 13122535 6 106 14.0 7.0 10.5 0.5 130 chr2L 13122405 intergenic not near genes chr2L 13122470 intergenic not near genes chr2L 13122535 intergenic not near genes chr2L_6_13120001 chr2L_13120001 RAL-727 329 chr2L 13154111 13154123 chr2L 13154189 13154197 7 77 6.5 4.0 5.2 1.1 86 chr2L 13154111 intergenic not near genes chr2L 13154154 intergenic not near genes chr2L 13154197 intergenic not near genes chr2L_7_13150001 chr2L_13150001 RAL-727 330 chr2L 13204315 13204341 chr2L 13204414 13204415 7 95 5.0 2.5 3.8 1.5 100 chr2L 13204315 intron Pect + chr2L 13204365 intron Pect + chr2L 13204415 intron Pect + chr2L_7_13200001 chr2L_13200001 RAL-727 331 chr2L 13215380 13215413 chr2L 13215655 13215688 21 275 6.0 3.0 4.5 3.8 308 chr2L 13215380 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215534 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215688 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_21_13215001 chr2L_13215001 RAL-727 332 chr2L 13231886 13231909 chr2L 13231996 13232020 7 111 7.5 7.5 7.5 0.8 134 chr2L 13231886 intergenic Prosalpha6T + chr2L 13231953 intergenic Prosalpha6T + chr2L 13232020 intergenic Prosalpha6T + chr2L_7_13230001 chr2L_13230001 RAL-727 333 chr2L 13346037 13346074 chr2L 13346120 13346158 12 83 6.0 6.0 6.0 1.7 121 chr2L 13346037 intergenic not near genes chr2L 13346098 intergenic not near genes chr2L 13346158 intergenic not near genes chr2L_12_13345001 chr2L_13345001 RAL-727 334 chr2L 13405647 13405668 chr2L 13410444 13410465 Doc 15 4795 8.5 4.0 6.2 2.1 4818 chr2L 13405647 exon CG7110 + chr2L 13408056 intron CG7110 + chr2L 13410465 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-727 335 chr2L 13405669 13405677 chr2L 13410443 13410474 Doc 5 4789 8.0 4.0 6.0 0.7 4805 chr2L 13405669 exon CG7110 + chr2L 13408072 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-727 336 chr2L 13481449 13481476 chr2L 13482056 13482083 jockey 14 607 6.0 8.0 7.0 1.8 634 chr2L 13481449 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482083 intron CG42784 + chr2L_14_13480001 chr2L_13480001 RAL-727 337 chr2L 13493331 13493363 chr2L 13493614 13493644 10 282 4.0 5.5 4.8 1.7 313 chr2L 13493331 intron CG42784 + chr2L 13493488 intron CG42784 + chr2L 13493644 intron CG42784 + chr2L_10_13490001 chr2L_13490001 RAL-727 338 chr2L 13692158 13692188 chr2L 13692234 13692264 6 76 6.0 2.5 4.2 1.2 106 chr2L 13692158 intron CG31814 - chr2L 13692211 intron CG31814 - chr2L 13692264 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-727 339 chr2L 13761287 13761302 chr2L 13761370 13761384 11 82 5.0 7.5 6.2 1.5 97 chr2L 13761287 intron TM9SF4 + chr2L 13761336 intron TM9SF4 + chr2L 13761384 intron TM9SF4 + chr2L_11_13760001 chr2L_13760001 RAL-727 340 chr2L 13761306 13761317 chr2L 13761368 13761400 8 75 3.5 6.0 4.8 1.4 94 chr2L 13761306 intron TM9SF4 + chr2L 13761353 intron TM9SF4 + chr2L 13761400 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-727 341 chr2L 13761804 13761817 chr2L 13762915 13762928 Doc 4 1111 17.5 6.5 12.0 0.3 1124 chr2L 13761804 intron TM9SF4 + chr2L 13762366 intron TM9SF4 + chr2L 13762928 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-727 342 chr2L 13761819 13761833 chr2L 13762913 13762943 Doc 7 1108 12.0 5.5 8.8 0.7 1124 chr2L 13761819 intron TM9SF4 + chr2L 13762381 intron TM9SF4 + chr2L 13762943 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-727 343 chr2L 13800175 13800207 chr2L 13800277 13800311 20 102 3.0 6.5 4.8 3.4 136 chr2L 13800175 intergenic not near genes chr2L 13800243 intergenic not near genes chr2L 13800311 intergenic not near genes chr2L_20_13800001 chr2L_13800001 RAL-727 344 chr2L 13853084 13853116 chr2L 13862234 13862266 roo 19 9148 7.5 7.0 7.2 2.3 9182 chr2L 13853084 intron CenG1A + chr2L 13857675 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_19_13855001 chr2L_13855001 RAL-727 345 chr2L 13904577 13904612 chr2L 13904657 13904687 25 78 3.5 3.0 3.2 6.0 110 chr2L 13904577 intergenic Smg5 - chr2L 13904632 intergenic Smg5 - chr2L 13904687 intergenic Smg5 - chr2L_25_13900001 chr2L_13900001 RAL-727 346 chr2L 13944411 13944435 chr2L 13944531 13944554 8 120 0.0 4.5 2.2 2.5 143 chr2L 13944411 intron Ance-3 + chr2L 13944482 intron Ance-3 + chr2L 13944554 intron Ance-3 + chr2L_8_13940001 chr2L_13940001 RAL-727 347 chr2L 14032596 14032617 chr2L 14033047 14033067 12 450 6.0 5.5 5.8 1.8 471 chr2L 14032596 3` UTR CR45284 - chr2L 14032832 3` UTR CR45284 - chr2L 14033067 3` UTR CR45284 - chr2L_12_14030001 chr2L_14030001 RAL-727 348 chr2L 14068616 14068629 chr2L 14068696 14068709 4 78 3.5 0.5 2.0 1.3 93 chr2L 14068616 intron nAChRalpha5 + chr2L 14068662 intron nAChRalpha5 + chr2L 14068709 intron nAChRalpha5 + chr2L_4_14065001 chr2L_14065001 RAL-727 349 chr2L 14102848 14102854 chr2L 14102929 14102935 5 81 0.0 0.0 0.0 5.0 87 chr2L 14102848 intergenic not near genes chr2L 14102892 intergenic not near genes chr2L 14102935 intergenic not near genes chr2L_5_14100001 chr2L_14100001 RAL-727 350 chr2L 14123712 14123744 chr2L 14123799 14123831 11 86 4.0 5.5 4.8 1.9 119 chr2L 14123712 intergenic not near genes chr2L 14123772 intergenic not near genes chr2L 14123831 intergenic not near genes chr2L_11_14120001 chr2L_14120001 RAL-727 351 chr2L 14151602 14151609 chr2L 14151680 14151687 5 78 4.0 6.0 5.0 0.8 85 chr2L 14151602 intron CG17341 + chr2L 14151644 intron CG17341 + chr2L 14151687 intron CG17341 + chr2L_5_14150001 chr2L_14150001 RAL-727 352 chr2L 14151613 14151619 chr2L 14151674 14151697 4 74 2.5 5.0 3.8 0.8 84 chr2L 14151613 intron CG17341 + chr2L 14151655 intron CG17341 + chr2L 14151697 intron CG17341 + chr2L_4_14150001 chr2L_14150001 RAL-727 353 chr2L 14160688 14160719 chr2L 14160774 14160797 18 85 1.0 8.5 4.8 3.1 109 chr2L 14160688 intergenic CG17341 +,CG43332 - chr2L 14160742 intergenic CG17341 +,CG43332 - chr2L 14160797 intergenic CG17341 +,CG43332 - chr2L_18_14160001 chr2L_14160001 RAL-727 354 chr2L 14337062 14337093 chr2L 14337149 14337180 14 85 5.5 6.5 6.0 2.0 118 chr2L 14337062 intron CG33090 + chr2L 14337121 intron CG33090 + chr2L 14337180 intron CG33090 + chr2L_14_14335001 chr2L_14335001 RAL-727 355 chr2L 14367861 14367890 chr2L 14367937 14367970 13 79 5.0 5.0 5.0 2.2 109 chr2L 14367861 intergenic not near genes chr2L 14367916 intergenic not near genes chr2L 14367970 intergenic not near genes chr2L_13_14365001 chr2L_14365001 RAL-727 356 chr2L 14411273 14411302 chr2L 14411357 14411386 15 83 3.0 7.0 5.0 2.5 113 chr2L 14411273 intergenic not near genes chr2L 14411330 intergenic not near genes chr2L 14411386 intergenic not near genes chr2L_15_14410001 chr2L_14410001 RAL-727 357 chr2L 14427502 14427525 chr2L 14427603 14427626 12 100 0.0 2.5 1.2 5.5 124 chr2L 14427502 intergenic not near genes chr2L 14427564 intergenic not near genes chr2L 14427626 intergenic not near genes chr2L_12_14425001 chr2L_14425001 RAL-727 358 chr2L 14549157 14549178 chr2L 14549233 14549253 10 76 4.0 4.5 4.2 1.9 96 chr2L 14549157 intergenic CG4218 - chr2L 14549205 intergenic CG4218 - chr2L 14549253 intergenic CG4218 - chr2L_10_14545001 chr2L_14545001 RAL-727 359 chr2L 14555147 14555159 chr2L 14555226 14555238 8 79 3.0 3.0 3.0 2.0 91 chr2L 14555147 intergenic not near genes chr2L 14555192 intergenic not near genes chr2L 14555238 intergenic not near genes chr2L_8_14555001 chr2L_14555001 RAL-727 360 chr2L 14588381 14588420 chr2L 14588535 14588567 26 152 8.0 3.5 5.8 3.8 186 chr2L 14588381 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588567 intergenic CG42680 - chr2L_26_14585001 chr2L_14585001 RAL-727 361 chr2L 14601975 14602003 chr2L 14602059 14602087 12 84 4.5 6.5 5.5 1.8 112 chr2L 14601975 exon osp - chr2L 14602031 intron osp - chr2L 14602087 intron osp - chr2L_12_14600001 chr2L_14600001 RAL-727 362 chr2L 14639182 14639193 chr2L 14639363 14639374 6 181 0.5 1.5 1.0 3.0 192 chr2L 14639182 intron osp - chr2L 14639278 intron osp - chr2L 14639374 intron osp - chr2L_6_14635001 chr2L_14635001 RAL-727 363 chr2L 14642569 14642597 chr2L 14651731 14651760 roo 10 9161 2.5 3.5 3.0 2.5 9191 chr2L 14642569 intron osp - chr2L 14647164 intron osp - chr2L 14651760 intron osp - chr2L_10_14645001 chr2L_14645001 RAL-727 364 chr2L 14707206 14707237 chr2L 14707325 14707356 27 117 14.0 9.0 11.5 2.2 150 chr2L 14707206 intergenic not near genes chr2L 14707281 intergenic not near genes chr2L 14707356 intergenic not near genes chr2L_27_14705001 chr2L_14705001 RAL-727 365 chr2L 14707585 14707618 chr2L 14708590 14708623 9 1005 12.0 19.5 15.8 0.5 1038 chr2L 14707585 intergenic not near genes chr2L 14708104 intergenic not near genes chr2L 14708623 intergenic not near genes chr2L_9_14705001 chr2L_14705001 RAL-727 366 chr2L 14706727 14706758 chr2L 14708989 14709020 11 2263 28.5 32.5 30.5 0.3 2293 chr2L 14706727 intergenic not near genes chr2L 14707874 intergenic not near genes chr2L 14709020 intergenic not near genes chr2L_11_14705001 chr2L_14705001 RAL-727 367 chr2L 14747533 14747565 chr2L 14747620 14747637 12 85 4.5 7.5 6.0 1.7 104 chr2L 14747533 intergenic not near genes chr2L 14747585 intergenic not near genes chr2L 14747637 intergenic not near genes chr2L_12_14745001 chr2L_14745001 RAL-727 368 chr2L 14803878 14803888 chr2L 14809081 14809091 copia 9 5202 13.0 11.5 12.2 0.7 5213 chr2L 14803878 intergenic not near genes chr2L 14806484 intergenic not near genes chr2L 14809091 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-727 369 chr2L 14803889 14803911 chr2L 14809080 14809114 copia 7 5198 9.0 11.0 10.0 0.6 5225 chr2L 14803889 intergenic not near genes chr2L 14806502 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-727 370 chr2L 14821684 14821700 chr2L 14821853 14821869 6 169 24.5 30.0 27.2 0.2 185 chr2L 14821684 intergenic not near genes chr2L 14821776 intergenic not near genes chr2L 14821869 intergenic not near genes chr2L_6_14820001 chr2L_14820001 RAL-727 371 chr2L 14833792 14833824 chr2L 14833895 14833928 10 104 3.5 2.0 2.8 2.6 136 chr2L 14833792 intergenic not near genes chr2L 14833860 intergenic not near genes chr2L 14833928 intergenic not near genes chr2L_10_14830001 chr2L_14830001 RAL-727 372 chr2L 14840975 14841007 chr2L 14841062 14841087 6 86 1.5 1.0 1.2 2.7 112 chr2L 14840975 3` UTR CR43805 - chr2L 14841031 3` UTR CR43805 - chr2L 14841087 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-727 373 chr2L 14847229 14847263 chr2L 14847307 14847316 11 76 3.0 4.0 3.5 2.4 87 chr2L 14847229 intron CG15279 - chr2L 14847272 intron CG15279 - chr2L 14847316 intron CG15279 - chr2L_11_14845001 chr2L_14845001 RAL-727 374 chr2L 14933377 14933385 chr2L 14933455 14933463 4 78 7.0 4.0 5.5 0.6 86 chr2L 14933377 intron CG42313 - chr2L 14933420 intron CG42313 - chr2L 14933463 intron CG42313 - chr2L_4_14930001 chr2L_14930001 RAL-727 375 chr2L 14984382 14984398 chr2L 14991984 14992000 opus 7 7602 10.0 9.0 9.5 0.7 7618 chr2L 14984382 intron mol - chr2L 14988191 intron mol - chr2L 14992000 intron mol - chr2L_7_14985001 chr2L_14985001 RAL-727 376 chr2L 15013149 15013178 chr2L 15013258 15013287 10 109 4.0 2.0 3.0 2.5 138 chr2L 15013149 intergenic CR43856 - chr2L 15013218 intergenic not near genes chr2L 15013287 intergenic not near genes chr2L_10_15010001 chr2L_15010001 RAL-727 377 chr2L 15044708 15044741 chr2L 15044783 15044817 12 76 2.0 0.0 1.0 6.0 109 chr2L 15044708 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044817 intergenic ck - chr2L_12_15040001 chr2L_15040001 RAL-727 378 chr2L 15078073 15078088 chr2L 15078161 15078175 11 88 6.0 4.0 5.0 1.8 102 chr2L 15078073 intron CG15270 + chr2L 15078124 intron CG15270 + chr2L 15078175 intron CG15270 + chr2L_11_15075001 chr2L_15075001 RAL-727 379 chr2L 15078090 15078101 chr2L 15078156 15078189 8 84 2.5 3.0 2.8 2.1 99 chr2L 15078090 intron CG15270 + chr2L 15078140 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-727 380 chr2L 15080900 15080934 chr2L 15080993 15081030 5 94 4.0 0.5 2.2 1.6 130 chr2L 15080900 intron CG15270 + chr2L 15080965 intron CG15270 + chr2L 15081030 intron CG15270 + chr2L_5_15080001 chr2L_15080001 RAL-727 381 chr2L 15122606 15122809 chr2L 15122690 15122889 20 80 5.0 16.5 10.8 1.7 283 chr2L 15122606 intergenic not near genes chr2L 15122748 intergenic not near genes chr2L 15122889 intergenic not near genes chr2L_20_15120001 chr2L_15120001 RAL-727 382 chr2L 15226374 15226389 chr2L 15226450 15226465 4 76 5.5 3.0 4.2 0.8 91 chr2L 15226374 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226465 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-727 383 chr2L 15226393 15226395 chr2L 15226448 15226467 4 70 4.5 3.0 3.8 0.8 74 chr2L 15226393 intergenic not near genes chr2L 15226430 intergenic not near genes chr2L 15226467 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-727 384 chr2L 15283893 15283900 chr2L 15284176 15284189 4 289 2.5 3.5 3.0 1.0 296 chr2L 15283893 intergenic not near genes chr2L 15284041 intergenic not near genes chr2L 15284189 intergenic not near genes chr2L_4_15280001 chr2L_15280001 RAL-727 385 chr2L 15295488 15295523 chr2L 15295575 15295610 16 84 1.5 1.5 1.5 6.4 122 chr2L 15295488 intergenic CR43764 - chr2L 15295549 intergenic CR43764 - chr2L 15295610 intergenic CR43764 - chr2L_16_15295001 chr2L_15295001 RAL-727 386 chr2L 15303212 15303241 chr2L 15303376 15303405 16 164 1.0 1.0 1.0 8.0 193 chr2L 15303212 intergenic not near genes chr2L 15303308 intergenic not near genes chr2L 15303405 intergenic not near genes chr2L_16_15300001 chr2L_15300001 RAL-727 387 chr2L 15309352 15309383 chr2L 15309455 15309486 9 102 2.5 2.0 2.2 2.8 134 chr2L 15309352 intergenic not near genes chr2L 15309419 intergenic not near genes chr2L 15309486 intergenic not near genes chr2L_9_15305001 chr2L_15305001 RAL-727 388 chr2L 15341791 15341816 chr2L 15341913 15341920 12 120 4.5 4.0 4.2 2.3 129 chr2L 15341791 intergenic not near genes chr2L 15341856 intergenic not near genes chr2L 15341920 intergenic not near genes chr2L_12_15340001 chr2L_15340001 RAL-727 389 chr2L 15343538 15343565 chr2L 15343623 15343650 17 85 3.0 0.0 1.5 6.8 112 chr2L 15343538 intergenic not near genes chr2L 15343594 intergenic not near genes chr2L 15343650 intergenic not near genes chr2L_17_15340001 chr2L_15340001 RAL-727 390 chr2L 15426702 15426712 chr2L 15426821 15426831 4 119 10.5 1.5 6.0 0.6 129 chr2L 15426702 intergenic not near genes chr2L 15426766 intergenic not near genes chr2L 15426831 intergenic not near genes chr2L_4_15425001 chr2L_15425001 RAL-727 391 chr2L 15426718 15426728 chr2L 15426820 15426839 6 111 4.5 1.0 2.8 1.6 121 chr2L 15426718 intergenic not near genes chr2L 15426778 intergenic not near genes chr2L 15426839 intergenic not near genes chr2L_6_15425001 chr2L_15425001 RAL-727 392 chr2L 15446052 15446074 chr2L 15453521 15453543 blood 9 7469 7.0 4.0 5.5 1.4 7491 chr2L 15446052 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453543 intergenic not near genes chr2L_9_15445001 chr2L_15445001 RAL-727 393 chr2L 15482578 15482588 chr2L 15482714 15482724 6 136 8.5 0.0 4.2 1.2 146 chr2L 15482578 intergenic not near genes chr2L 15482651 intergenic not near genes chr2L 15482724 intergenic not near genes chr2L_6_15480001 chr2L_15480001 RAL-727 394 chr2L 15514319 15514332 chr2L 15514403 15514415 7 83 4.5 7.5 6.0 1.0 96 chr2L 15514319 intergenic not near genes chr2L 15514367 intergenic not near genes chr2L 15514415 intergenic not near genes chr2L_7_15510001 chr2L_15510001 RAL-727 395 chr2L 15586409 15586435 chr2L 15593461 15593487 297 12 7052 8.0 4.0 6.0 1.7 7078 chr2L 15586409 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593487 intergenic not near genes chr2L_12_15585001 chr2L_15585001 RAL-727 396 chr2L 15814973 15814984 chr2L 15815045 15815072 5 85 3.0 2.0 2.5 1.4 99 chr2L 15814973 intergenic not near genes chr2L 15815022 intergenic not near genes chr2L 15815072 intergenic not near genes chr2L_5_15815001 chr2L_15815001 RAL-727 397 chr2L 15814985 15814989 chr2L 15815044 15815077 6 82 2.0 2.0 2.0 2.0 92 chr2L 15814985 intergenic not near genes chr2L 15815031 intergenic not near genes chr2L 15815077 intergenic not near genes chr2L_6_15815001 chr2L_15815001 RAL-727 398 chr2L 15821059 15821077 chr2L 15821159 15821177 6 100 0.0 2.0 1.0 3.0 118 chr2L 15821059 intergenic not near genes chr2L 15821118 intergenic not near genes chr2L 15821177 intergenic not near genes chr2L_6_15820001 chr2L_15820001 RAL-727 399 chr2L 15915651 15915684 chr2L 15915729 15915762 18 76 4.5 5.5 5.0 3.0 111 chr2L 15915651 intron beat-Ib - chr2L 15915706 intron beat-Ib - chr2L 15915762 intron beat-Ib - chr2L_18_15915001 chr2L_15915001 RAL-727 400 chr2L 15956023 15956059 chr2L 15957490 15957519 hobo 21 1465 7.5 3.5 5.5 3.2 1496 chr2L 15956023 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_21_15955001 chr2L_15955001 RAL-727 401 chr2L 16058124 16058152 chr2L 16058265 16058293 17 141 3.0 1.0 2.0 5.7 169 chr2L 16058124 intron beat-Ia + chr2L 16058208 intron beat-Ia + chr2L 16058293 intron beat-Ia + chr2L_17_16055001 chr2L_16055001 RAL-727 402 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 15.0 32.0 23.5 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-727 403 chr2L 16115530 16115551 chr2L 16115606 16115627 8 76 7.5 5.0 6.2 1.1 97 chr2L 16115530 intergenic not near genes chr2L 16115578 intergenic not near genes chr2L 16115627 intergenic not near genes chr2L_8_16115001 chr2L_16115001 RAL-727 404 chr2L 16141148 16141191 chr2L 16146369 16146398 copia 10 5207 0.0 3.0 1.5 4.0 5250 chr2L 16141148 intergenic not near genes chr2L 16143773 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-727 405 chr2L 16153743 16153749 chr2L 16160811 16160817 297 7 7068 5.0 8.0 6.5 0.9 7074 chr2L 16153743 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160817 intergenic not near genes chr2L_7_16155001 chr2L_16155001 RAL-727 406 chr2L 16195504 16195533 chr2L 16195991 16196020 18 487 3.5 7.0 5.2 2.9 516 chr2L 16195504 intergenic CR44734 -,CR44735 - chr2L 16195762 intergenic CR44735 -,CR44734 - chr2L 16196020 3` UTR CR44735 - chr2L_18_16195001 chr2L_16195001 RAL-727 407 chr2L 9084337 9084340 chr2L 16217660 16217660 5 7133321 18.0 32.0 25.0 0.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-727 408 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405059 33.0 23.0 28.0 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-727 409 chr2L 16280256 16280286 chr2L 16281427 16281452 1360 12 1169 4.0 5.5 4.8 2.1 1196 chr2L 16280256 intron crp - chr2L 16280854 intron crp - chr2L 16281452 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-727 410 chr2L 16511989 16511995 chr2L 16519116 16519122 HMS-Beagle 5 7127 3.0 5.0 4.0 1.0 7133 chr2L 16511989 intron CG5953 - chr2L 16515556 intron CG5953 - chr2L 16519122 intron CG5953 - chr2L_5_16515001 chr2L_16515001 RAL-727 411 chr2L 16538066 16538090 chr2L 16538147 16538156 11 78 8.0 1.5 4.8 1.9 90 chr2L 16538066 intergenic not near genes chr2L 16538111 intergenic not near genes chr2L 16538156 intergenic not near genes chr2L_11_16535001 chr2L_16535001 RAL-727 412 chr2L 16544119 16544137 chr2L 16544198 16544216 6 79 6.5 7.0 6.8 0.8 97 chr2L 16544119 intergenic not near genes chr2L 16544168 intergenic not near genes chr2L 16544216 intergenic not near genes chr2L_6_16540001 chr2L_16540001 RAL-727 413 chr2L 16589820 16589829 chr2L 16589910 16589919 5 90 7.5 11.0 9.2 0.5 99 chr2L 16589820 intron CG42389 + chr2L 16589870 intron CG42389 + chr2L 16589919 intron CG42389 + chr2L_5_16585001 chr2L_16585001 RAL-727 414 chr2L 16660926 16660937 chr2L 16661003 16661014 6 75 5.0 1.5 3.2 1.4 88 chr2L 16660926 exon CG42389 + chr2L 16660970 exon CG42389 + chr2L 16661014 exon CG42389 + chr2L_6_16660001 chr2L_16660001 RAL-727 415 chr2L 16670430 16670447 chr2L 16670507 16670524 8 77 1.5 6.0 3.8 1.7 94 chr2L 16670430 intron Trpgamma - chr2L 16670477 intron Trpgamma - chr2L 16670524 intron Trpgamma - chr2L_8_16670001 chr2L_16670001 RAL-727 416 chr2L 16679782 16679808 chr2L 16679935 16679961 6 153 5.0 5.0 5.0 1.0 179 chr2L 16679782 intergenic her +,grp +,squ + chr2L 16679872 intergenic her +,grp +,squ + chr2L 16679961 intergenic grp +,squ +,her + chr2L_6_16675001 chr2L_16675001 RAL-727 417 chr2L 16693919 16693943 chr2L 16693999 16694024 12 80 5.0 6.0 5.5 1.8 105 chr2L 16693919 intron grp + chr2L 16693972 intron grp + chr2L 16694024 intron grp + chr2L_12_16690001 chr2L_16690001 RAL-727 418 chr2L 16697070 16697086 chr2L 16697263 16697277 6 193 2.5 2.5 2.5 1.7 207 chr2L 16697070 intron grp + chr2L 16697174 intron grp + chr2L 16697277 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-727 419 chr2L 16709089 16709104 chr2L 16709173 16709188 11 83 2.5 15.0 8.8 1.1 99 chr2L 16709089 intron CG31808 - chr2L 16709138 intron CG31808 - chr2L 16709188 intron CG31808 - chr2L_11_16705001 chr2L_16705001 RAL-727 420 chr2L 16721438 16721468 chr2L 16721530 16721560 13 91 3.5 4.5 4.0 2.6 122 chr2L 16721438 intron Cyt-c-p + chr2L 16721499 intron Cyt-c-p + chr2L 16721560 intron Cyt-c-p + chr2L_13_16720001 chr2L_16720001 RAL-727 421 chr2L 16796078 16796094 chr2L 16796179 16796195 4 101 1.0 1.5 1.2 1.8 117 chr2L 16796078 intergenic Ugt36Ba + chr2L 16796136 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796195 intergenic Ugt36Ba +,Ugt36Bb + chr2L_4_16795001 chr2L_16795001 RAL-727 422 chr2L 16796096 16796109 chr2L 16796178 16796210 5 97 1.0 1.5 1.2 2.3 114 chr2L 16796096 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796153 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796210 intergenic Ugt36Ba +,Ugt36Bb + chr2L_5_16795001 chr2L_16795001 RAL-727 423 chr2L 16958102 16958136 chr2L 16962890 16962924 Doc 10 4788 3.0 8.0 5.5 1.5 4822 chr2L 16958102 intergenic not near genes chr2L 16960513 intergenic not near genes chr2L 16962924 intergenic not near genes chr2L_10_16960001 chr2L_16960001 RAL-727 424 chr2L 17032503 17032522 chr2L 17032588 17032607 10 85 2.5 6.0 4.2 1.9 104 chr2L 17032503 intergenic not near genes chr2L 17032555 intergenic not near genes chr2L 17032607 intergenic not near genes chr2L_10_17030001 chr2L_17030001 RAL-727 425 chr2L 17033916 17033949 chr2L 17034001 17034034 9 85 2.5 5.0 3.8 1.9 118 chr2L 17033916 intergenic not near genes chr2L 17033975 intergenic not near genes chr2L 17034034 intergenic not near genes chr2L_9_17030001 chr2L_17030001 RAL-727 426 chr2L 17050024 17050049 chr2L 17050106 17050130 7 85 1.0 4.5 2.8 1.8 106 chr2L 17050024 intergenic not near genes chr2L 17050077 intergenic not near genes chr2L 17050130 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-727 427 chr2L 17052412 17052440 chr2L 17052524 17052552 5 112 3.5 2.5 3.0 1.2 140 chr2L 17052412 intergenic not near genes chr2L 17052482 intergenic not near genes chr2L 17052552 intergenic not near genes chr2L_5_17050001 chr2L_17050001 RAL-727 428 chr2L 17053281 17053311 chr2L 17053690 17053721 12 408 1.0 6.5 3.8 2.5 440 chr2L 17053281 intergenic not near genes chr2L 17053501 intergenic not near genes chr2L 17053721 intergenic not near genes chr2L_12_17050001 chr2L_17050001 RAL-727 429 chr2L 17098034 17098058 chr2L 17098110 17098134 15 75 4.0 3.0 3.5 3.3 100 chr2L 17098034 intergenic not near genes chr2L 17098084 intergenic not near genes chr2L 17098134 intergenic not near genes chr2L_15_17095001 chr2L_17095001 RAL-727 430 chr2L 17164549 17164577 chr2L 17165712 17165714 11 1159 6.0 6.0 6.0 1.6 1165 chr2L 17164549 intron,intron CG34106 +,beat-IIIa + chr2L 17165132 intron,intron CG34106 +,beat-IIIa + chr2L 17165714 intron,intron CG34106 +,beat-IIIa + chr2L_11_17165001 chr2L_17165001 RAL-727 431 chr2L 17167564 17167593 chr2L 17167805 17167810 pogo 10 237 3.5 3.5 3.5 2.2 246 chr2L 17167564 intron,intron CG34106 +,beat-IIIa + chr2L 17167687 intron,intron CG34106 +,beat-IIIa + chr2L 17167810 intron,intron CG34106 +,beat-IIIa + chr2L_10_17165001 chr2L_17165001 RAL-727 432 chr2L 17170464 17170474 chr2L 17170555 17170565 4 91 2.0 4.0 3.0 1.0 101 chr2L 17170464 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170514 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170565 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L_4_17170001 chr2L_17170001 RAL-727 433 chr2L 17199161 17199192 chr2L 17200628 17200659 hobo 7 1467 4.0 4.5 4.2 1.3 1498 chr2L 17199161 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200659 intron beat-IIIc - chr2L_7_17195001 chr2L_17195001 RAL-727 434 chr2L 17238830 17238863 chr2L 17238915 17238945 10 84 2.5 2.0 2.2 3.1 115 chr2L 17238830 intron beat-IIIc - chr2L 17238888 intron beat-IIIc - chr2L 17238945 intron beat-IIIc - chr2L_10_17235001 chr2L_17235001 RAL-727 435 chr2L 17243929 17243941 chr2L 17244137 17244147 4 208 6.5 2.5 4.5 0.7 218 chr2L 17243929 intron beat-IIIc - chr2L 17244038 intron beat-IIIc - chr2L 17244147 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 RAL-727 436 chr2L 17273192 17273219 chr2L 17277974 17277995 F-element 10 4779 6.0 8.0 7.0 1.2 4803 chr2L 17273192 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17277995 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-727 437 chr2L 17273220 17273228 chr2L 17277972 17277991 F-element 5 4771 4.0 7.5 5.8 0.7 4771 chr2L 17273220 intergenic not near genes chr2L 17275606 intergenic not near genes chr2L 17277991 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-727 438 chr2L 17327909 17327926 chr2L 17327995 17328008 12 84 12.0 6.5 9.2 1.2 99 chr2L 17327909 intergenic not near genes chr2L 17327958 intergenic not near genes chr2L 17328008 intergenic not near genes chr2L_12_17325001 chr2L_17325001 RAL-727 439 chr2L 17360023 17360049 chr2L 17360201 17360227 11 178 1.0 0.0 0.5 7.3 204 chr2L 17360023 intergenic not near genes chr2L 17360125 intergenic not near genes chr2L 17360227 intergenic not near genes chr2L_11_17360001 chr2L_17360001 RAL-727 440 chr2L 17419300 17419310 chr2L 17419376 17419386 6 76 4.5 3.5 4.0 1.2 86 chr2L 17419300 intron Dif - chr2L 17419343 intron Dif - chr2L 17419386 intron Dif - chr2L_6_17415001 chr2L_17415001 RAL-727 441 chr2L 17425770 17425792 chr2L 17425897 17425919 10 127 4.5 5.5 5.0 1.7 149 chr2L 17425770 intron Dif - chr2L 17425844 intron Dif - chr2L 17425919 intron Dif - chr2L_10_17425001 chr2L_17425001 RAL-727 442 chr2L 17432013 17432048 chr2L 17432120 17432142 1360 11 105 0.0 4.0 2.0 3.7 129 chr2L 17432013 intron Dif - chr2L 17432078 intron Dif - chr2L 17432142 intron Dif - chr2L_11_17430001 chr2L_17430001 RAL-727 443 chr2L 17466961 17466989 chr2L 17467382 17467410 12 418 1.5 2.5 2.0 4.0 449 chr2L 17466961 intron BicD - chr2L 17467186 intron BicD - chr2L 17467410 intron BicD - chr2L_12_17465001 chr2L_17465001 RAL-727 444 chr2L 17565381 17565410 chr2L 17565472 17565501 10 91 3.5 0.0 1.8 3.6 120 chr2L 17565381 intergenic not near genes chr2L 17565441 intergenic not near genes chr2L 17565501 intergenic not near genes chr2L_10_17565001 chr2L_17565001 RAL-727 445 chr2L 17584096 17584124 chr2L 17584884 17584911 4 780 16.5 4.0 10.2 0.4 815 chr2L 17584096 5` UTR CR45111 + chr2L 17584504 intergenic CR45111 +,CR45112 - chr2L 17584911 3` UTR CR45112 - chr2L_4_17580001 chr2L_17580001 RAL-727 446 chr2L 17607473 17607483 chr2L 17607571 17607581 5 98 10.0 3.5 6.8 0.6 108 chr2L 17607473 intergenic CR44412 - chr2L 17607527 intergenic CR44412 - chr2L 17607581 intergenic CR44412 - chr2L_5_17605001 chr2L_17605001 RAL-727 447 chr2L 17641951 17641983 chr2L 17642042 17642074 8 91 2.5 5.5 4.0 1.6 123 chr2L 17641951 intergenic not near genes chr2L 17642012 intergenic not near genes chr2L 17642074 intergenic not near genes chr2L_8_17640001 chr2L_17640001 RAL-727 448 chr2L 17680999 17681024 chr2L 17681073 17681100 17 74 3.0 1.0 2.0 5.7 101 chr2L 17680999 intron CadN - chr2L 17681050 intron CadN - chr2L 17681100 intron CadN - chr2L_17_17680001 chr2L_17680001 RAL-727 449 chr2L 17723792 17723801 chr2L 17723885 17723893 5 93 5.5 4.0 4.8 0.9 101 chr2L 17723792 intron CadN - chr2L 17723842 intron CadN - chr2L 17723893 intron CadN - chr2L_5_17720001 chr2L_17720001 RAL-727 450 chr2L 17727869 17727880 chr2L 17729335 17729344 hobo 5 1466 4.5 8.5 6.5 0.7 1475 chr2L 17727869 intron CadN - chr2L 17728606 intron CadN - chr2L 17729344 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-727 451 chr2L 17747995 17748028 chr2L 17748072 17748105 7 75 3.0 6.0 4.5 1.3 110 chr2L 17747995 intron CadN - chr2L 17748050 intron CadN - chr2L 17748105 intron CadN - chr2L_7_17745001 chr2L_17745001 RAL-727 452 chr2L 17819920 17819953 chr2L 17825123 17825156 copia 13 5203 4.5 5.5 5.0 2.2 5236 chr2L 17819920 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825156 intron CadN2 - chr2L_13_17820001 chr2L_17820001 RAL-727 453 chr2L 17842624 17842657 chr2L 17842708 17842742 14 85 3.0 4.0 3.5 3.1 118 chr2L 17842624 intron CadN2 - chr2L 17842683 intron CadN2 - chr2L 17842742 intron CadN2 - chr2L_14_17840001 chr2L_17840001 RAL-727 454 chr2L 17855496 17855524 chr2L 17855574 17855601 18 76 5.5 3.5 4.5 3.3 105 chr2L 17855496 intron CadN2 - chr2L 17855548 intron CadN2 - chr2L 17855601 intron CadN2 - chr2L_18_17855001 chr2L_17855001 RAL-727 455 chr2L 17879997 17880030 chr2L 17880084 17880117 13 86 5.0 3.5 4.2 2.5 120 chr2L 17879997 intergenic not near genes chr2L 17880057 intergenic not near genes chr2L 17880117 intergenic not near genes chr2L_13_17880001 chr2L_17880001 RAL-727 456 chr2L 17911968 17911983 chr2L 17914146 17914161 pogo 5 2177 8.0 4.5 6.2 0.7 2193 chr2L 17911968 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914161 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-727 457 chr2L 17944418 17944451 chr2L 17944581 17944612 18 161 3.5 5.5 4.5 3.3 194 chr2L 17944418 intergenic not near genes chr2L 17944515 intergenic not near genes chr2L 17944612 intergenic not near genes chr2L_18_17940001 chr2L_17940001 RAL-727 458 chr2L 17951957 17951977 chr2L 17953424 17953444 hobo 8 1467 2.5 5.5 4.0 1.6 1487 chr2L 17951957 intergenic CR44398 -,CR44397 - chr2L 17952700 intergenic not near genes chr2L 17953444 intergenic not near genes chr2L_8_17950001 chr2L_17950001 RAL-727 459 chr2L 18020741 18020773 chr2L 18020828 18020860 12 86 3.5 4.5 4.0 2.4 119 chr2L 18020741 intron rdo + chr2L 18020800 intron rdo + chr2L 18020860 intron rdo + chr2L_12_18020001 chr2L_18020001 RAL-727 460 chr2L 18026993 18027002 chr2L 18027323 18027342 5 337 4.0 3.5 3.8 1.0 349 chr2L 18026993 5` UTR rdo + chr2L 18027168 intron rdo + chr2L 18027342 intron rdo + chr2L_5_18025001 chr2L_18025001 RAL-727 461 chr2L 18027003 18027012 chr2L 18027320 18027352 4 334 2.0 3.5 2.8 1.1 349 chr2L 18027003 intron rdo + chr2L 18027178 intron rdo + chr2L 18027352 intron rdo + chr2L_4_18025001 chr2L_18025001 RAL-727 462 chr2L 18051875 18051909 chr2L 18061022 18061056 roo 12 9145 6.5 4.0 5.2 1.9 9181 chr2L 18051875 intron rdo + chr2L 18056466 intron rdo + chr2L 18061056 intron rdo + chr2L_12_18055001 chr2L_18055001 RAL-727 463 chr2L 18111242 18111267 chr2L 18111333 18111352 17 87 6.5 7.0 6.8 2.2 110 chr2L 18111242 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111352 intergenic not near genes chr2L_17_18110001 chr2L_18110001 RAL-727 464 chr2L 18244869 18244896 chr2L 18244948 18244975 8 79 0.5 2.5 1.5 3.2 106 chr2L 18244869 intron CG42750 - chr2L 18244922 intron CG42750 - chr2L 18244975 intron CG42750 - chr2L_8_18240001 chr2L_18240001 RAL-727 465 chr2L 18254816 18254840 chr2L 18254916 18254940 12 100 5.0 5.0 5.0 2.0 124 chr2L 18254816 intron CG42750 - chr2L 18254878 intron CG42750 - chr2L 18254940 intron CG42750 - chr2L_12_18250001 chr2L_18250001 RAL-727 466 chr2L 18264062 18264090 chr2L 18264139 18264167 12 76 2.5 5.5 4.0 2.4 105 chr2L 18264062 intron CG42750 - chr2L 18264114 intron CG42750 - chr2L 18264167 intron CG42750 - chr2L_12_18260001 chr2L_18260001 RAL-727 467 chr2L 18274040 18274069 chr2L 18274126 18274155 7 83 4.5 1.5 3.0 1.8 115 chr2L 18274040 intron CG42750 - chr2L 18274098 intron CG42750 - chr2L 18274155 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-727 468 chr2L 18303976 18304004 chr2L 18304066 18304095 14 87 2.5 3.5 3.0 3.5 119 chr2L 18303976 intergenic not near genes chr2L 18304036 intergenic not near genes chr2L 18304095 intergenic not near genes chr2L_14_18300001 chr2L_18300001 RAL-727 469 chr2L 18334623 18334646 chr2L 18334708 18334725 12 84 6.5 7.0 6.8 1.5 102 chr2L 18334623 intron Fas3 + chr2L 18334674 intron Fas3 + chr2L 18334725 intron Fas3 + chr2L_12_18330001 chr2L_18330001 RAL-727 470 chr2L 18408023 18408055 chr2L 18412807 18412839 Doc 13 4783 8.0 0.0 4.0 2.6 4816 chr2L 18408023 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_13_18410001 chr2L_18410001 RAL-727 471 chr2L 18439076 18439108 chr2L 18439162 18439194 13 86 4.5 3.0 3.8 2.7 118 chr2L 18439076 intergenic not near genes chr2L 18439135 intergenic not near genes chr2L 18439194 intergenic not near genes chr2L_13_18435001 chr2L_18435001 RAL-727 472 chr2L 18442356 18442370 chr2L 18442431 18442448 8 74 0.0 5.5 2.8 2.1 92 chr2L 18442356 3` UTR RpS26 - chr2L 18442402 3` UTR RpS26 - chr2L 18442448 3` UTR RpS26 - chr2L_8_18440001 chr2L_18440001 RAL-727 473 chr2L 18538567 18538584 chr2L 18538649 18538664 5 81 1.0 1.5 1.2 2.3 97 chr2L 18538567 intron Pde11 - chr2L 18538616 intron Pde11 - chr2L 18538664 intron Pde11 - chr2L_5_18535001 chr2L_18535001 RAL-727 474 chr2L 18538586 18538599 chr2L 18538648 18538680 8 76 1.0 1.5 1.2 3.6 94 chr2L 18538586 intron Pde11 - chr2L 18538633 intron Pde11 - chr2L 18538680 intron Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-727 475 chr2L 18565573 18565604 chr2L 18566007 18566038 13 429 9.0 4.0 6.5 1.7 465 chr2L 18565573 intron Pde11 - chr2L 18565806 intron Pde11 - chr2L 18566038 intron Pde11 - chr2L_13_18565001 chr2L_18565001 RAL-727 476 chr2L 18612432 18612441 chr2L 18612580 18612589 6 148 0.0 0.0 0.0 6.0 157 chr2L 18612432 intergenic Atac2 - chr2L 18612510 intergenic Atac2 - chr2L 18612589 intergenic Atac2 - chr2L_6_18610001 chr2L_18610001 RAL-727 477 chr2L 16217660 16217660 chr2L 18622718 18622719 5 2405058 33.0 23.0 28.0 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_5_17420001 chr2L_17420001 RAL-727 478 chr2L 18811406 18811436 chr2L 18811488 18811518 6 82 4.0 0.0 2.0 2.0 112 chr2L 18811406 intergenic CG10570 -,CG42502 - chr2L 18811462 intergenic CG10570 -,CG42502 - chr2L 18811518 intergenic not near genes chr2L_6_18810001 chr2L_18810001 RAL-727 479 chr2L 18811671 18811687 chr2L 18811880 18811886 10 206 1.0 2.0 1.5 4.0 215 chr2L 18811671 intergenic not near genes chr2L 18811778 intergenic not near genes chr2L 18811886 intergenic not near genes chr2L_10_18810001 chr2L_18810001 RAL-727 480 chr2L 18812556 18812590 chr2L 18812819 18812853 21 262 5.5 4.0 4.8 3.6 297 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_21_18810001 chr2L_18810001 RAL-727 481 chr2L 18847912 18847929 chr2L 18848318 18848330 6 408 2.5 8.0 5.2 1.0 418 chr2L 18847912 intron CG17321 + chr2L 18848121 intron CG17321 + chr2L 18848330 intron CG17321 + chr2L_6_18845001 chr2L_18845001 RAL-727 482 chr2L 18898396 18898425 chr2L 18898477 18898507 9 81 2.5 3.5 3.0 2.2 111 chr2L 18898396 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898507 intergenic not near genes chr2L_9_18895001 chr2L_18895001 RAL-727 483 chr2L 18926580 18926592 chr2L 18926687 18926699 4 106 5.0 2.5 3.8 0.8 119 chr2L 18926580 intron ssp3 - chr2L 18926640 intron ssp3 - chr2L 18926699 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-727 484 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744194 17.5 24.5 21.0 0.2 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-727 485 chr2L 19147376 19147402 chr2L 19154406 19154437 297 16 7033 7.5 6.0 6.8 2.1 7061 chr2L 19147376 intron brat + chr2L 19150906 intron brat + chr2L 19154437 intron brat + chr2L_16_19150001 chr2L_19150001 RAL-727 486 chr2L 19174726 19174762 chr2L 19174835 19174871 12 105 5.5 6.0 5.8 1.8 145 chr2L 19174726 intron brat + chr2L 19174798 intron brat + chr2L 19174871 intron brat + chr2L_12_19170001 chr2L_19170001 RAL-727 487 chr2L 19246826 19246852 chr2L 19246907 19246933 20 81 3.5 2.5 3.0 5.0 107 chr2L 19246826 intergenic not near genes chr2L 19246880 intergenic not near genes chr2L 19246933 intergenic not near genes chr2L_20_19245001 chr2L_19245001 RAL-727 488 chr2L 19255054 19255081 chr2L 19255139 19255166 12 84 0.5 5.0 2.8 3.2 112 chr2L 19255054 intergenic not near genes chr2L 19255110 intergenic not near genes chr2L 19255166 intergenic not near genes chr2L_12_19255001 chr2L_19255001 RAL-727 489 chr2L 19264084 19264108 chr2L 19264204 19264228 11 120 4.5 2.0 3.2 2.6 144 chr2L 19264084 intergenic not near genes chr2L 19264156 intergenic not near genes chr2L 19264228 intergenic not near genes chr2L_11_19260001 chr2L_19260001 RAL-727 490 chr2L 19324092 19324113 chr2L 19324188 19324196 9 94 10.0 4.5 7.2 1.1 104 chr2L 19324092 5` UTR CR45700 + chr2L 19324144 5` UTR CR45700 + chr2L 19324196 5` UTR CR45700 + chr2L_9_19320001 chr2L_19320001 RAL-727 491 chr2L 19345012 19345044 chr2L 19357221 19357253 blood 11 12206 3.5 3.0 3.2 2.6 12241 chr2L 19345012 intron dnt - chr2L 19351132 intron dnt - chr2L 19357253 intron dnt - chr2L_11_19350001 chr2L_19350001 RAL-727 492 chr2L 19357548 19357569 chr2L 19357635 19357659 14 89 7.5 6.5 7.0 1.8 111 chr2L 19357548 intron dnt - chr2L 19357604 intron dnt - chr2L 19357659 intron dnt - chr2L_14_19355001 chr2L_19355001 RAL-727 493 chr2L 19365560 19365566 chr2L 19365635 19365642 4 74 0.0 8.0 4.0 0.8 82 chr2L 19365560 intergenic CG13086 + chr2L 19365601 intergenic CG13086 + chr2L 19365642 intergenic CG13086 + chr2L_4_19365001 chr2L_19365001 RAL-727 494 chr2L 19371525 19371559 chr2L 19371613 19371647 14 86 4.5 4.0 4.2 2.7 122 chr2L 19371525 intron CG17349 + chr2L 19371586 intron CG17349 + chr2L 19371647 intron CG17349 + chr2L_14_19370001 chr2L_19370001 RAL-727 495 chr2L 19374500 19374518 chr2L 19374609 19374627 13 109 4.0 3.5 3.8 2.7 127 chr2L 19374500 intergenic not near genes chr2L 19374564 intergenic not near genes chr2L 19374627 intergenic not near genes chr2L_13_19370001 chr2L_19370001 RAL-727 496 chr2L 19378337 19378367 chr2L 19378420 19378426 11 81 4.5 5.0 4.8 1.9 89 chr2L 19378337 intergenic not near genes chr2L 19378382 intergenic not near genes chr2L 19378426 intergenic not near genes chr2L_11_19375001 chr2L_19375001 RAL-727 497 chr2L 19380508 19380529 chr2L 19380588 19380609 10 80 1.0 1.0 1.0 5.0 101 chr2L 19380508 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_10_19380001 chr2L_19380001 RAL-727 498 chr2L 19405620 19405638 chr2L 19405710 19405728 13 90 2.5 2.5 2.5 3.7 108 chr2L 19405620 intron Pax - chr2L 19405674 intron Pax - chr2L 19405728 intron Pax - chr2L_13_19405001 chr2L_19405001 RAL-727 499 chr2L 19407721 19407740 chr2L 19407918 19407937 13 196 7.5 7.5 7.5 1.5 216 chr2L 19407721 intron Pax - chr2L 19407829 intron Pax - chr2L 19407937 intron Pax - chr2L_13_19405001 chr2L_19405001 RAL-727 500 chr2L 19422083 19422088 chr2L 19422173 19422176 4 88 23.5 0.5 12.0 0.3 93 chr2L 19422083 intron Pax - chr2L 19422130 intron Pax - chr2L 19422176 intron Pax - chr2L_4_19420001 chr2L_19420001 RAL-727 501 chr2L 19437525 19437532 chr2L 19437617 19437624 4 92 3.0 3.0 3.0 1.0 99 chr2L 19437525 intron CG10237 - chr2L 19437574 intron CG10237 - chr2L 19437624 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-727 502 chr2L 19438510 19438522 chr2L 19438595 19438607 11 84 14.5 13.5 14.0 0.7 97 chr2L 19438510 intron CG10237 - chr2L 19438558 intron CG10237 - chr2L 19438607 intron CG10237 - chr2L_11_19435001 chr2L_19435001 RAL-727 503 chr2L 19438525 19438541 chr2L 19438592 19438593 4 61 8.5 13.0 10.8 0.3 68 chr2L 19438525 intron CG10237 - chr2L 19438559 intron CG10237 - chr2L 19438593 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-727 504 chr2L 19562544 19562562 chr2L 19562624 19562642 11 79 0.0 4.5 2.2 3.4 98 chr2L 19562544 intron Tep5 + chr2L 19562593 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-727 505 chr2L 19595878 19595898 chr2L 19595957 19595963 8 75 2.0 6.0 4.0 1.6 85 chr2L 19595878 intron Lar + chr2L 19595920 intron Lar + chr2L 19595963 intron Lar + chr2L_8_19595001 chr2L_19595001 RAL-727 506 chr2L 19597293 19597306 chr2L 19597507 19597539 12 228 4.0 8.0 6.0 1.7 246 chr2L 19597293 intron Lar + chr2L 19597416 intron Lar + chr2L 19597539 intron Lar + chr2L_12_19595001 chr2L_19595001 RAL-727 507 chr2L 19620095 19620131 chr2L 19621083 19621117 jockey 9 987 3.5 2.0 2.8 2.4 1022 chr2L 19620095 intron Lar + chr2L 19620606 intron Lar + chr2L 19621117 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-727 508 chr2L 19652572 19652600 chr2L 19674006 19674034 opus 14 21434 8.0 6.0 7.0 1.8 21462 chr2L 19652572 intron Lar + chr2L 19663303 intron Lar + chr2L 19674034 intron Lar + chr2L_14_19660001 chr2L_19660001 RAL-727 509 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 16 9135 6.0 5.5 5.8 2.4 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_16_19705001 chr2L_19705001 RAL-727 510 chr2L 19722766 19722777 chr2L 19723354 19723365 6 588 8.0 6.0 7.0 0.8 599 chr2L 19722766 intron Lar + chr2L 19723066 intron Lar + chr2L 19723365 intron Lar + chr2L_6_19720001 chr2L_19720001 RAL-727 511 chr2L 19742082 19742099 chr2L 19742165 19742182 12 82 14.0 11.0 12.5 0.9 100 chr2L 19742082 intergenic not near genes chr2L 19742132 intergenic not near genes chr2L 19742182 intergenic not near genes chr2L_12_19740001 chr2L_19740001 RAL-727 512 chr2L 19762813 19762840 chr2L 19763053 19763082 pogo 12 241 4.0 4.5 4.2 2.3 269 chr2L 19762813 5` UTR fbp - chr2L 19762948 intron fbp - chr2L 19763082 intron fbp - chr2L_12_19760001 chr2L_19760001 RAL-727 513 chr2L 19791164 19791171 chr2L 19791239 19791241 8 84 13.0 10.5 11.8 0.6 77 chr2L 19791164 intron CdGAPr - chr2L 19791202 intron CdGAPr - chr2L 19791241 intron CdGAPr - chr2L_8_19790001 chr2L_19790001 RAL-727 514 chr2L 19791173 19791176 chr2L 19791236 19791262 6 76 9.5 10.0 9.8 0.6 89 chr2L 19791173 intron CdGAPr - chr2L 19791218 intron CdGAPr - chr2L 19791262 intron CdGAPr - chr2L_6_19790001 chr2L_19790001 RAL-727 515 chr2L 19794014 19794047 chr2L 19794098 19794131 24 81 1.5 6.5 4.0 4.8 117 chr2L 19794014 intron fs(2)ltoPP43 - chr2L 19794072 intron fs(2)ltoPP43 - chr2L 19794131 intron fs(2)ltoPP43 - chr2L_24_19790001 chr2L_19790001 RAL-727 516 chr2L 19821792 19821821 chr2L 19821869 19821898 17 77 6.0 2.5 4.2 3.3 106 chr2L 19821792 intron sick + chr2L 19821845 intron sick + chr2L 19821898 intron sick + chr2L_17_19820001 chr2L_19820001 RAL-727 517 chr2L 19856397 19856425 chr2L 19856641 19856670 10 240 8.0 9.0 8.5 1.1 273 chr2L 19856397 intron sick + chr2L 19856534 intron sick + chr2L 19856670 intron sick + chr2L_10_19855001 chr2L_19855001 RAL-727 518 chr2L 19871549 19871574 chr2L 19871636 19871661 6 83 2.5 8.0 5.2 1.0 112 chr2L 19871549 intron sick + chr2L 19871605 intron sick + chr2L 19871661 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-727 519 chr2L 19941519 19941524 chr2L 19941608 19941613 5 89 6.0 8.5 7.2 0.6 94 chr2L 19941519 intron sick + chr2L 19941566 intron sick + chr2L 19941613 intron sick + chr2L_5_19940001 chr2L_19940001 RAL-727 520 chr2L 19994673 19994683 chr2L 19994730 19994743 4 61 2.5 2.0 2.2 1.2 70 chr2L 19994673 intron CG43861 - chr2L 19994708 intron CG43861 - chr2L 19994743 intron CG43861 - chr2L_4_19990001 chr2L_19990001 RAL-727 521 chr2L 20000047 20000072 chr2L 20000136 20000148 4 81 1.5 4.5 3.0 1.0 101 chr2L 20000047 intron CG43861 - chr2L 20000098 intron CG43861 - chr2L 20000148 intron,3` UTR CG43861 -,CR44908 - chr2L_4_20000001 chr2L_20000001 RAL-727 522 chr2L 20005870 20005904 chr2L 20010946 20010980 flea 12 5076 3.5 4.0 3.8 2.5 5110 chr2L 20005870 intron CG43861 - chr2L 20008425 intron CG43861 - chr2L 20010980 intron CG43861 - chr2L_12_20005001 chr2L_20005001 RAL-727 523 chr2L 20022089 20022124 chr2L 20022202 20022236 12 113 1.5 3.5 2.5 3.4 147 chr2L 20022089 intergenic not near genes chr2L 20022162 intergenic not near genes chr2L 20022236 intergenic not near genes chr2L_12_20020001 chr2L_20020001 RAL-727 524 chr2L 20057051 20057077 chr2L 20057127 20057153 9 73 2.5 4.0 3.2 2.1 102 chr2L 20057051 intergenic not near genes chr2L 20057102 intergenic not near genes chr2L 20057153 intergenic not near genes chr2L_9_20055001 chr2L_20055001 RAL-727 525 chr2L 20124329 20124361 chr2L 20124407 20124439 6 78 5.0 4.0 4.5 1.1 110 chr2L 20124329 intergenic not near genes chr2L 20124384 intergenic not near genes chr2L 20124439 intergenic not near genes chr2L_6_20120001 chr2L_20120001 RAL-727 526 chr2L 20272112 20272142 chr2L 20282823 20282853 copia 15 10710 9.0 6.5 7.8 1.7 10741 chr2L 20272112 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_15_20275001 chr2L_20275001 RAL-727 527 chr2L 20296506 20296541 chr2L 20296587 20296622 11 80 2.0 5.0 3.5 2.4 116 chr2L 20296506 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_11_20295001 chr2L_20295001 RAL-727 528 chr2L 20303159 20303189 chr2L 20310627 20310657 blood 14 7468 0.0 4.0 2.0 4.7 7498 chr2L 20303159 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310657 intergenic not near genes chr2L_14_20305001 chr2L_20305001 RAL-727 529 chr2L 20310882 20310918 chr2L 20310961 20310996 13 78 0.0 4.5 2.2 4.1 114 chr2L 20310882 intergenic spir + chr2L 20310939 intergenic spir + chr2L 20310996 intergenic spir + chr2L_13_20310001 chr2L_20310001 RAL-727 530 chr2L 20367557 20367581 chr2L 20367693 20367709 12 134 6.0 6.0 6.0 1.7 152 chr2L 20367557 intergenic not near genes chr2L 20367633 intergenic not near genes chr2L 20367709 intergenic not near genes chr2L_12_20365001 chr2L_20365001 RAL-727 531 chr2L 20372219 20372255 chr2L 20372469 20372496 pogo 4 246 0.5 4.0 2.2 1.2 277 chr2L 20372219 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372496 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-727 532 chr2L 20372849 20372877 chr2L 20372928 20372940 7 76 3.5 3.0 3.2 1.7 91 chr2L 20372849 exon Ugt37a1 - chr2L 20372894 exon Ugt37a1 - chr2L 20372940 exon Ugt37a1 - chr2L_7_20370001 chr2L_20370001 RAL-727 533 chr2L 20383277 20383291 chr2L 20383359 20383362 4 77 8.5 5.0 6.8 0.5 85 chr2L 20383277 intergenic not near genes chr2L 20383320 intergenic not near genes chr2L 20383362 intergenic not near genes chr2L_4_20380001 chr2L_20380001 RAL-727 534 chr2L 20498698 20498708 chr2L 20498797 20498807 8 99 6.0 9.5 7.8 0.9 109 chr2L 20498698 intergenic not near genes chr2L 20498752 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-727 535 chr2L 20500415 20500441 chr2L 20500495 20500521 12 80 4.5 4.5 4.5 2.2 106 chr2L 20500415 intergenic not near genes chr2L 20500468 intergenic not near genes chr2L 20500521 intergenic not near genes chr2L_12_20500001 chr2L_20500001 RAL-727 536 chr2L 20568670 20568684 chr2L 20569060 20569074 X-element 7 390 3.5 4.5 4.0 1.4 404 chr2L 20568670 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569074 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-727 537 chr2L 20576217 20576252 chr2L 20583685 20583719 blood 11 7466 7.5 5.0 6.2 1.5 7502 chr2L 20576217 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_11_20575001 chr2L_20575001 RAL-727 538 chr2L 20601794 20601816 chr2L 20601871 20601894 11 78 5.0 4.0 4.5 2.0 100 chr2L 20601794 intron CR44909 - chr2L 20601844 intron CR44909 - chr2L 20601894 intron CR44909 - chr2L_11_20600001 chr2L_20600001 RAL-727 539 chr2L 20602716 20602747 chr2L 20602804 20602835 12 88 2.0 1.5 1.8 4.3 119 chr2L 20602716 intron CR44909 - chr2L 20602776 intron CR44909 - chr2L 20602835 intron CR44909 - chr2L_12_20600001 chr2L_20600001 RAL-727 540 chr2L 20674829 20674835 chr2L 20674914 20674920 5 85 6.5 0.0 3.2 1.2 91 chr2L 20674829 intron CG31678 - chr2L 20674874 intron CG31678 - chr2L 20674920 intron CG31678 - chr2L_5_20670001 chr2L_20670001 RAL-727 541 chr2L 20740279 20740281 chr2L 20748149 20748154 Tirant 4 7873 12.5 14.0 13.2 0.3 7875 chr2L 20740279 3` UTR Fs(2)Ket + chr2L 20744216 intron Fs(2)Ket + chr2L 20748154 3` UTR Fs(2)Ket + chr2L_4_20740001 chr2L_20740001 RAL-727 542 chr2L 20804703 20804734 chr2L 20804788 20804819 13 83 9.5 6.5 8.0 1.4 116 chr2L 20804703 intron CG9328 + chr2L 20804761 intron CG9328 + chr2L 20804819 intron CG9328 + chr2L_13_20800001 chr2L_20800001 RAL-727 543 chr2L 20835806 20835840 chr2L 20836523 20836557 Quasimodo 12 717 5.0 2.5 3.8 2.5 751 chr2L 20835806 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836557 intergenic Spn38F - chr2L_12_20835001 chr2L_20835001 RAL-727 544 chr2L 20862581 20862591 chr2L 20862678 20862688 5 96 0.0 12.0 6.0 0.7 107 chr2L 20862581 intergenic not near genes chr2L 20862634 intergenic not near genes chr2L 20862688 intergenic not near genes chr2L_5_20860001 chr2L_20860001 RAL-727 545 chr2L 20891535 20891544 chr2L 20896636 20896645 jockey 4 5101 3.5 6.5 5.0 0.7 5110 chr2L 20891535 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896645 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 RAL-727 546 chr2L 20901473 20901491 chr2L 20902630 20902655 1360 5 1162 1.5 2.5 2.0 1.7 1182 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902064 intron,intron CG43739 -,sky - chr2L 20902655 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-727 547 chr2L 20967930 20967960 chr2L 20968021 20968033 21 90 3.5 8.5 6.0 3.0 103 chr2L 20967930 intron CG42238 - chr2L 20967982 intron CG42238 - chr2L 20968033 intron CG42238 - chr2L_21_20965001 chr2L_20965001 RAL-727 548 chr2L 20976639 20976679 chr2L 20981454 20981494 X-element 18 4814 4.0 4.5 4.2 3.5 4855 chr2L 20976639 intron CG42238 - chr2L 20979066 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_18_20975001 chr2L_20975001 RAL-727 549 chr2L 20984606 20984640 chr2L 20984683 20984721 15 80 1.0 3.5 2.2 4.7 115 chr2L 20984606 intron CG42238 - chr2L 20984664 intron CG42238 - chr2L 20984721 intron CG42238 - chr2L_15_20980001 chr2L_20980001 RAL-727 550 chr2L 21020271 21020309 chr2L 21023948 21023962 NOF 18 3673 1.5 3.0 2.2 5.6 3691 chr2L 21020271 intron CG42238 - chr2L 21022116 intron CG42238 - chr2L 21023962 intron CG42238 - chr2L_18_21020001 chr2L_21020001 RAL-727 551 chr2L 21041134 21041166 chr2L 21049394 21049427 Tirant 14 8258 7.5 5.5 6.5 1.9 8293 chr2L 21041134 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_14_21045001 chr2L_21045001 RAL-727 552 chr2L 21119286 21119290 chr2L 21119367 21119374 6 83 11.5 3.5 7.5 0.7 88 chr2L 21119286 intron Nhe2 + chr2L 21119330 intron Nhe2 + chr2L 21119374 intron Nhe2 + chr2L_6_21115001 chr2L_21115001 RAL-727 553 chr2L 21119291 21119318 chr2L 21119366 21119375 13 81 4.5 3.0 3.8 2.7 84 chr2L 21119291 intron Nhe2 + chr2L 21119333 intron Nhe2 + chr2L 21119375 intron Nhe2 + chr2L_13_21115001 chr2L_21115001 RAL-727 554 chr2L 21196181 21196188 chr2L 21196303 21196312 7 123 1.5 3.5 2.5 2.0 131 chr2L 21196181 intron Ret - chr2L 21196246 intron Ret - chr2L 21196312 intron Ret - chr2L_7_21195001 chr2L_21195001 RAL-727 555 chr2L 21284054 21284082 chr2L 21284526 21284555 21 471 5.5 3.5 4.5 3.8 501 chr2L 21284054 intergenic not near genes chr2L 21284304 intergenic not near genes chr2L 21284555 intergenic not near genes chr2L_21_21280001 chr2L_21280001 RAL-727 556 chr2L 21285635 21285669 chr2L 21285733 21285766 16 96 7.0 8.5 7.8 1.8 131 chr2L 21285635 intergenic Mio - chr2L 21285700 intergenic Mio - chr2L 21285766 intergenic Mio - chr2L_16_21285001 chr2L_21285001 RAL-727 557 chr2L 21286605 21286635 chr2L 21286683 21286713 20 77 5.5 5.5 5.5 3.1 108 chr2L 21286605 exon Mio - chr2L 21286659 intron Mio - chr2L 21286713 intron Mio - chr2L_20_21285001 chr2L_21285001 RAL-727 558 chr2L 21307470 21307497 chr2L 21307552 21307577 13 82 4.5 2.0 3.2 3.1 107 chr2L 21307470 intron Mio - chr2L 21307524 intron Mio - chr2L 21307577 intron Mio - chr2L_13_21305001 chr2L_21305001 RAL-727 559 chr2L 21347549 21347583 chr2L 21355021 21355055 blood 14 7471 5.0 3.0 4.0 2.8 7506 chr2L 21347549 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355055 intron Tsp39D + chr2L_14_21350001 chr2L_21350001 RAL-727 560 chr2L 21381197 21381225 chr2L 21381300 21381317 5 100 6.0 3.0 4.5 0.9 120 chr2L 21381197 intron nrv3 + chr2L 21381257 intron nrv3 + chr2L 21381317 intron nrv3 + chr2L_5_21380001 chr2L_21380001 RAL-727 561 chr2L 21396598 21396622 chr2L 21396833 21396857 11 235 5.5 6.5 6.0 1.6 259 chr2L 21396598 intergenic not near genes chr2L 21396728 intergenic not near genes chr2L 21396857 intergenic not near genes chr2L_11_21395001 chr2L_21395001 RAL-727 562 chr2L 21597027 21597063 chr2L 21604771 21604807 roo 20 7743 3.0 6.0 4.5 3.6 7780 chr2L 21597027 intergenic not near genes chr2L 21600917 intergenic not near genes chr2L 21604807 intergenic not near genes chr2L_20_21600001 chr2L_21600001 RAL-727 563 chr2L 21605041 21605068 chr2L 21606704 21606731 10 1661 5.0 6.0 5.5 1.5 1690 chr2L 21605041 intergenic not near genes chr2L 21605886 intergenic not near genes chr2L 21606731 intergenic not near genes chr2L_10_21605001 chr2L_21605001 RAL-727 564 chr2L 21634062 21634084 chr2L 21634224 21634248 9 163 1.5 6.5 4.0 1.8 186 chr2L 21634062 intron Ac3 + chr2L 21634155 intron Ac3 + chr2L 21634248 intron Ac3 + chr2L_9_21630001 chr2L_21630001 RAL-727 565 chr2L 21691832 21691859 chr2L 21698297 21698329 Burdock 6 6469 4.5 1.0 2.8 1.6 6497 chr2L 21691832 intron CG31619 + chr2L 21695080 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-727 566 chr2L 21743753 21743793 chr2L 21743830 21743870 15 77 4.5 4.0 4.2 2.9 117 chr2L 21743753 intron step - chr2L 21743812 intron step - chr2L 21743870 exon step - chr2L_15_21740001 chr2L_21740001 RAL-727 567 chr2L 21744689 21744717 chr2L 21744775 21744804 13 87 3.5 3.5 3.5 2.9 115 chr2L 21744689 intron step - chr2L 21744746 intron step - chr2L 21744804 intron step - chr2L_13_21740001 chr2L_21740001 RAL-727 568 chr2L 21745252 21745257 chr2L 21745341 21745344 5 89 2.5 2.5 2.5 1.4 92 chr2L 21745252 intron step - chr2L 21745298 intron step - chr2L 21745344 intron step - chr2L_5_21745001 chr2L_21745001 RAL-727 569 chr2L 21745261 21745280 chr2L 21745337 21745370 4 86 1.0 2.5 1.8 1.4 109 chr2L 21745261 intron step - chr2L 21745316 intron step - chr2L 21745370 intron step - chr2L_4_21745001 chr2L_21745001 RAL-727 570 chr2L 21750101 21750135 chr2L 21750421 21750458 10 323 2.0 5.0 3.5 2.2 357 chr2L 21750101 intron step - chr2L 21750280 intron step - chr2L 21750458 intron step - chr2L_10_21750001 chr2L_21750001 RAL-727 571 chr2L 21766646 21766677 chr2L 21766733 21766764 12 86 2.0 4.0 3.0 3.0 118 chr2L 21766646 intron CG31612 - chr2L 21766705 intron CG31612 - chr2L 21766764 intron CG31612 - chr2L_12_21765001 chr2L_21765001 RAL-727 572 chr2L 21819340 21819354 chr2L 21819417 21819441 9 84 3.5 8.0 5.8 1.3 101 chr2L 21819340 intergenic CR44786 + chr2L 21819390 intergenic CR44786 + chr2L 21819441 intergenic CR44786 + chr2L_9_21815001 chr2L_21815001 RAL-727 573 chr2L 21963777 21963807 chr2L 21963855 21963885 13 78 5.5 4.0 4.8 2.2 108 chr2L 21963777 intergenic not near genes chr2L 21963831 intergenic not near genes chr2L 21963885 intergenic not near genes chr2L_13_21960001 chr2L_21960001 RAL-727 574 chr2L 21981681 21981713 chr2L 21990846 21990869 roo 16 9162 4.0 7.5 5.8 2.4 9188 chr2L 21981681 exon CG2528 - chr2L 21986275 intron CG2528 - chr2L 21990869 exon CG2528 - chr2L_16_21985001 chr2L_21985001 RAL-727 575 chr2L 22011918 22011945 chr2L 22011999 22012026 14 80 4.0 5.0 4.5 2.5 108 chr2L 22011918 intergenic not near genes chr2L 22011972 intergenic not near genes chr2L 22012026 intergenic not near genes chr2L_14_22010001 chr2L_22010001 RAL-727 576 chr2L 22192023 22192059 chr2L 22192112 22192148 10 89 1.5 2.5 2.0 3.3 125 chr2L 22192023 intron Ir40a - chr2L 22192086 intron Ir40a - chr2L 22192148 intron Ir40a - chr2L_10_22190001 chr2L_22190001 RAL-727 577 chr2L 22192215 22192248 chr2L 22192609 22192609 12 389 5.5 6.0 5.8 1.8 394 chr2L 22192215 intron Ir40a - chr2L 22192412 intron Ir40a - chr2L 22192609 intron Ir40a - chr2L_12_22190001 chr2L_22190001 RAL-727 578 chr2L 22294355 22294380 chr2L 22294443 22294468 10 88 0.0 4.0 2.0 3.3 113 chr2L 22294355 intergenic not near genes chr2L 22294412 intergenic not near genes chr2L 22294468 intergenic not near genes chr2L_10_22290001 chr2L_22290001 RAL-727 579 chr2L 22490511 22490529 chr2L 22497636 22497643 springer 4 7127 0.0 0.0 0.0 4.0 7132 chr2L 22490511 intergenic not near genes chr2L 22494077 intergenic not near genes chr2L 22497643 intergenic not near genes chr2L_4_22490001 chr2L_22490001 RAL-727 580 chr2L 22545982 22545986 chr2L 22546075 22546082 6 95 16.5 1.5 9.0 0.6 100 chr2L 22545982 intron CG17490 + chr2L 22546032 intron CG17490 + chr2L 22546082 intron CG17490 + chr2L_6_22545001 chr2L_22545001 RAL-727 581 chr2L 22545991 22546009 chr2L 22546073 22546105 8 94 7.0 1.5 4.2 1.5 114 chr2L 22545991 intron CG17490 + chr2L 22546048 intron CG17490 + chr2L 22546105 intron CG17490 + chr2L_8_22545001 chr2L_22545001 RAL-727 582 chr2L 22548923 22548942 chr2L 22550143 22550167 1360 12 1224 1.0 9.5 5.2 1.9 1244 chr2L 22548923 intergenic CG17490 + chr2L 22549545 intergenic not near genes chr2L 22550167 intergenic CG17493 + chr2L_12_22545001 chr2L_22545001 RAL-727 583 chr2L 22674075 22674095 chr2L 22674146 22674172 10 76 5.5 6.5 6.0 1.4 97 chr2L 22674075 intron CG40006 - chr2L 22674124 intron CG40006 - chr2L 22674172 intron CG40006 - chr2L_10_22670001 chr2L_22670001 RAL-727 584 chr2L 22676129 22676155 chr2L 22676367 22676393 14 238 2.0 2.5 2.2 4.4 264 chr2L 22676129 intron CG40006 - chr2L 22676261 intron CG40006 - chr2L 22676393 intron CG40006 - chr2L_14_22675001 chr2L_22675001 RAL-727 585 chr2L 22679803 22679822 chr2L 22684567 22684594 F-element 15 4768 9.5 7.5 8.5 1.6 4791 chr2L 22679803 intron CG40006 - chr2L 22682198 intron CG40006 - chr2L 22684594 intron CG40006 - chr2L_15_22680001 chr2L_22680001 RAL-727 586 chr2L 22679825 22679830 chr2L 22684565 22684598 F-element 6 4766 7.5 7.0 7.2 0.7 4773 chr2L 22679825 intron CG40006 - chr2L 22682212 intron CG40006 - chr2L 22684598 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-727 587 chr2L 22693938 22693951 chr2L 22694005 22694036 7 83 2.0 5.5 3.8 1.5 98 chr2L 22693938 intron CG40006 - chr2L 22693987 intron CG40006 - chr2L 22694036 intron CG40006 - chr2L_7_22690001 chr2L_22690001 RAL-727 588 chr2L 22727603 22727635 chr2L 22727723 22727769 4 130 2.5 0.0 1.2 1.8 166 chr2L 22727603 intron CG40006 - chr2L 22727686 intron CG40006 - chr2L 22727769 intron CG40006 - chr2L_4_22725001 chr2L_22725001 RAL-727 589 chr2L 22737944 22737949 chr2L 22738066 22738070 4 122 7.5 5.0 6.2 0.6 126 chr2L 22737944 intron CG40006 - chr2L 22738007 intron CG40006 - chr2L 22738070 intron CG40006 - chr2L_4_22735001 chr2L_22735001 RAL-727 590 chr2L 22776421 22776448 chr2L 22778210 22778237 S-element 16 1789 3.0 4.0 3.5 3.6 1816 chr2L 22776421 intergenic not near genes chr2L 22777329 intergenic not near genes chr2L 22778237 intergenic not near genes chr2L_16_22775001 chr2L_22775001 RAL-727 591 chr2L 22983957 22983970 chr2L 22984017 22984044 5 72 4.0 5.0 4.5 0.9 87 chr2L 22983957 intron cta + chr2L 22984000 intron cta + chr2L 22984044 intron cta + chr2L_5_22980001 chr2L_22980001 RAL-727 592 chr2L 23168857 23168881 chr2L 23168933 23168938 5 65 9.0 4.0 6.5 0.7 81 chr2L 23168857 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168898 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168938 intron CG12567 - chr2L_5_23165001 chr2L_23165001 RAL-727 593 chr2R 529324 529357 chr2R 537946 537982 Max-element 12 8621 5.0 4.5 4.8 2.1 8658 chr2R 529324 intron CG40378 + chr2R 533653 intron CG40378 + chr2R 537982 intron CG40378 + chr2R_12_530001 chr2R_530001 RAL-727 594 chr2R 1082368 1082385 chr2R 1087129 1087161 Doc 14 4770 10.5 6.5 8.5 1.5 4793 chr2R 1082368 intron rl + chr2R 1084764 intron rl + chr2R 1087161 intron rl + chr2R_14_1080001 chr2R_1080001 RAL-727 595 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 4 10143355 26.5 19.0 22.8 0.2 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_4_6390001 chr2R_6390001 RAL-727 596 chr2R 1365864 1365896 chr2R 1365975 1366008 16 110 6.0 6.0 6.0 2.3 144 chr2R 1365864 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366008 intron l(2)41Ab + chr2R_16_1365001 chr2R_1365001 RAL-727 597 chr2R 1410880 1410911 chr2R 1410967 1410999 15 87 5.5 7.5 6.5 2.0 119 chr2R 1410880 intron l(2)41Ab + chr2R 1410940 intron l(2)41Ab + chr2R 1410999 intron l(2)41Ab + chr2R_15_1410001 chr2R_1410001 RAL-727 598 chr2R 2015130 2015165 chr2R 2015207 2015242 15 76 4.5 4.5 4.5 2.7 112 chr2R 2015130 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_15_2015001 chr2R_2015001 RAL-727 599 chr2R 2498991 2499018 chr2R 2508132 2508165 roo 12 9144 2.5 7.0 4.8 2.1 9174 chr2R 2498991 intron MFS17 - chr2R 2503578 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_12_2500001 chr2R_2500001 RAL-727 600 chr2R 2508309 2508339 chr2R 2508447 2508477 13 138 5.0 8.5 6.8 1.7 168 chr2R 2508309 intron MFS17 - chr2R 2508393 intron MFS17 - chr2R 2508477 intron MFS17 - chr2R_13_2505001 chr2R_2505001 RAL-727 601 chr2R 2591545 2591550 chr2R 2594221 2594226 roo 4 2676 50.0 22.0 36.0 0.1 2681 chr2R 2591545 intergenic not near genes chr2R 2592886 intergenic not near genes chr2R 2594226 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-727 602 chr2R 2591554 2591567 chr2R 2594214 2594235 roo 4 2670 51.0 21.0 36.0 0.1 2681 chr2R 2591554 intergenic not near genes chr2R 2592894 intergenic not near genes chr2R 2594235 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-727 603 chr2R 3144097 3144108 chr2R 3393369 3393386 Doc 6 249277 21.0 8.5 14.8 0.4 249289 chr2R 3144097 intron CG42596 + chr2R 3268742 intergenic not near genes chr2R 3393386 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-727 604 chr2R 3291929 3292100 chr2R 3915097 3915261 5 623164 7.5 40.0 23.8 0.2 623332 chr2R 3291929 intergenic not near genes chr2R 3603595 intergenic not near genes chr2R 3915261 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-727 605 chr2R 3515283 3515313 chr2R 3515371 3515401 7 88 11.5 11.5 11.5 0.6 118 chr2R 3515283 intergenic not near genes chr2R 3515342 intergenic not near genes chr2R 3515401 intergenic not near genes chr2R_7_3515001 chr2R_3515001 RAL-727 606 chr2R 3532615 3532643 chr2R 3536054 3536060 Doc 6 3438 3.0 1.5 2.2 1.9 3445 chr2R 3532615 intergenic not near genes chr2R 3534338 intergenic not near genes chr2R 3536060 intergenic not near genes chr2R_6_3530001 chr2R_3530001 RAL-727 607 chr2R 3818931 3818942 chr2R 3819047 3819058 12 116 14.5 7.0 10.8 1.0 127 chr2R 3818931 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819058 intergenic not near genes chr2R_12_3815001 chr2R_3815001 RAL-727 608 chr2R 4312951 4312983 chr2R 4313034 4313067 15 84 7.0 4.5 5.8 2.2 116 chr2R 4312951 intergenic not near genes chr2R 4313009 intergenic not near genes chr2R 4313067 intergenic not near genes chr2R_15_4310001 chr2R_4310001 RAL-727 609 chr2R 4603338 4603371 chr2R 4603421 4603422 4 72 4.0 4.5 4.2 0.8 84 chr2R 4603338 intron p120ctn + chr2R 4603380 intron p120ctn + chr2R 4603422 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-727 610 chr2R 4624362 4624368 chr2R 4624482 4624483 4 118 13.0 9.0 11.0 0.3 121 chr2R 4624362 intergenic not near genes chr2R 4624422 intergenic not near genes chr2R 4624483 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-727 611 chr2R 4624369 4624379 chr2R 4624481 4624499 10 117 7.5 8.5 8.0 1.1 130 chr2R 4624369 intergenic not near genes chr2R 4624434 intergenic not near genes chr2R 4624499 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-727 612 chr2R 4634157 4634184 chr2R 4634235 4634251 13 71 3.5 8.5 6.0 1.9 94 chr2R 4634157 intergenic not near genes chr2R 4634204 intergenic not near genes chr2R 4634251 intergenic not near genes chr2R_13_4630001 chr2R_4630001 RAL-727 613 chr2R 4702498 4702506 chr2R 4702636 4702644 7 138 2.5 16.0 9.2 0.7 146 chr2R 4702498 intron Nipped-B - chr2R 4702571 intron Nipped-B - chr2R 4702644 intron Nipped-B - chr2R_7_4700001 chr2R_4700001 RAL-727 614 chr2R 4750339 4750375 chr2R 4751496 4751539 1360 14 1154 3.0 4.5 3.8 2.9 1200 chr2R 4750339 intron conu + chr2R 4750939 intron conu + chr2R 4751539 intron conu + chr2R_14_4750001 chr2R_4750001 RAL-727 615 chr2R 4933367 4933392 chr2R 4933923 4933946 6 553 0.5 4.0 2.2 1.9 579 chr2R 4933367 intron Ir41a + chr2R 4933656 intron Ir41a + chr2R 4933946 intron Ir41a + chr2R_6_4930001 chr2R_4930001 RAL-727 616 chr2R 4940960 4940979 chr2R 4943409 4943429 7 2450 31.5 20.0 25.8 0.3 2469 chr2R 4940960 intron Ir41a + chr2R 4942194 intron Ir41a + chr2R 4943429 intron Ir41a + chr2R_7_4940001 chr2R_4940001 RAL-727 617 chr2R 5019277 5019310 chr2R 5019363 5019396 10 84 4.0 8.0 6.0 1.4 119 chr2R 5019277 intron Ir41a + chr2R 5019336 intron Ir41a + chr2R 5019396 intron Ir41a + chr2R_10_5015001 chr2R_5015001 RAL-727 618 chr2R 5040749 5040765 chr2R 5041239 5041252 7 488 1.5 3.0 2.2 2.2 503 chr2R 5040749 intergenic not near genes chr2R 5041000 intergenic not near genes chr2R 5041252 intergenic not near genes chr2R_7_5040001 chr2R_5040001 RAL-727 619 chr2R 5075927 5075961 chr2R 5076089 5076123 6 162 31.5 32.5 32.0 0.2 196 chr2R 5075927 intergenic not near genes chr2R 5076025 intergenic not near genes chr2R 5076123 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-727 620 chr2R 5080792 5080819 chr2R 5080883 5080906 15 87 1.5 7.5 4.5 2.7 114 chr2R 5080792 intergenic not near genes chr2R 5080849 intergenic not near genes chr2R 5080906 intergenic not near genes chr2R_15_5080001 chr2R_5080001 RAL-727 621 chr2R 5087177 5087184 chr2R 5087280 5087280 4 101 22.0 9.0 15.5 0.2 103 chr2R 5087177 intergenic not near genes chr2R 5087228 intergenic not near genes chr2R 5087280 intergenic not near genes chr2R_4_5085001 chr2R_5085001 RAL-727 622 chr2R 5087185 5087212 chr2R 5087279 5087300 16 98 6.0 9.0 7.5 1.9 115 chr2R 5087185 intergenic not near genes chr2R 5087242 intergenic not near genes chr2R 5087300 intergenic not near genes chr2R_16_5085001 chr2R_5085001 RAL-727 623 chr2R 5141633 5141638 chr2R 5143494 5143499 1360 4 1861 9.5 9.5 9.5 0.4 1866 chr2R 5141633 intergenic not near genes chr2R 5142566 intergenic not near genes chr2R 5143499 intergenic not near genes chr2R_4_5140001 chr2R_5140001 RAL-727 624 chr2R 5240228 5240240 chr2R 5240304 5240311 9 75 10.0 8.0 9.0 0.9 83 chr2R 5240228 intron Nipped-A - chr2R 5240270 intron Nipped-A - chr2R 5240311 intron Nipped-A - chr2R_9_5240001 chr2R_5240001 RAL-727 625 chr2R 5266119 5266153 chr2R 5266202 5266213 16 78 5.5 4.0 4.8 2.8 94 chr2R 5266119 intron d4 + chr2R 5266166 intron d4 + chr2R 5266213 intron d4 + chr2R_16_5265001 chr2R_5265001 RAL-727 626 chr2R 5303492 5303522 chr2R 5303576 5303610 21 87 4.5 3.5 4.0 4.2 118 chr2R 5303492 intergenic not near genes chr2R 5303551 intergenic not near genes chr2R 5303610 intergenic not near genes chr2R_21_5300001 chr2R_5300001 RAL-727 627 chr2R 5341358 5341380 chr2R 5341561 5341565 5 194 3.0 0.0 1.5 2.0 207 chr2R 5341358 intergenic CG10465 - chr2R 5341462 intergenic CG10465 - chr2R 5341565 intergenic not near genes chr2R_5_5340001 chr2R_5340001 RAL-727 628 chr2R 5363487 5363516 chr2R 5363565 5363594 5 77 5.0 4.5 4.8 0.9 107 chr2R 5363487 5` UTR CR42646 + chr2R 5363540 intron CR42646 + chr2R 5363594 intron CR42646 + chr2R_5_5360001 chr2R_5360001 RAL-727 629 chr2R 5396258 5396290 chr2R 5396496 5396528 13 236 40.5 50.0 45.2 0.3 270 chr2R 5396258 intergenic not near genes chr2R 5396393 intergenic not near genes chr2R 5396528 intergenic not near genes chr2R_13_5395001 chr2R_5395001 RAL-727 630 chr2R 5417995 5418003 chr2R 5420627 5420634 Burdock 4 2632 7.0 2.0 4.5 0.7 2639 chr2R 5417995 intron laccase2 + chr2R 5419314 intron laccase2 + chr2R 5420634 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-727 631 chr2R 5418005 5418027 chr2R 5420626 5420659 Burdock 10 2631 2.0 2.0 2.0 3.3 2654 chr2R 5418005 intron laccase2 + chr2R 5419332 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_10_5415001 chr2R_5415001 RAL-727 632 chr2R 5472367 5472393 chr2R 5472461 5472487 8 93 5.0 5.5 5.2 1.3 120 chr2R 5472367 intron CG30440 - chr2R 5472427 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_8_5470001 chr2R_5470001 RAL-727 633 chr2R 5473366 5473399 chr2R 5473461 5473494 14 95 5.5 3.0 4.2 2.7 128 chr2R 5473366 intron CG30440 - chr2R 5473430 intron CG30440 - chr2R 5473494 intron CG30440 - chr2R_14_5470001 chr2R_5470001 RAL-727 634 chr2R 5543206 5543222 chr2R 5547290 5547306 invader1 11 4083 0.0 8.5 4.2 2.1 4100 chr2R 5543206 intron CG30438 + chr2R 5545256 intron CG30438 + chr2R 5547306 intron CG30438 + chr2R_11_5545001 chr2R_5545001 RAL-727 635 chr2R 5581397 5581404 chr2R 5627606 5627613 4 46209 0.5 19.0 9.8 0.4 46216 chr2R 5581397 intergenic not near genes chr2R 5604505 exon Fis1 - chr2R 5627613 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-727 636 chr2R 5581406 5581408 chr2R 5627605 5627617 4 46206 0.5 16.5 8.5 0.4 46211 chr2R 5581406 intergenic not near genes chr2R 5604512 exon Fis1 - chr2R 5627617 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-727 637 chr2R 5581410 5581425 chr2R 5627603 5627633 4 46204 0.5 15.5 8.0 0.4 46223 chr2R 5581410 intergenic not near genes chr2R 5604522 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-727 638 chr2R 5640025 5640046 chr2R 5640094 5640100 11 72 7.5 9.5 8.5 1.2 75 chr2R 5640025 intergenic not near genes chr2R 5640062 intergenic not near genes chr2R 5640100 intergenic not near genes chr2R_11_5640001 chr2R_5640001 RAL-727 639 chr2R 5774293 5774305 chr2R 5774547 5774559 10 254 3.0 7.5 5.2 1.6 266 chr2R 5774293 3` UTR Gp210 + chr2R 5774426 intergenic Gp210 +,ZnT41F - chr2R 5774559 intergenic ZnT41F -,Gp210 + chr2R_10_5770001 chr2R_5770001 RAL-727 640 chr2R 5790462 5790495 chr2R 5790547 5790580 13 85 3.5 2.5 3.0 3.2 118 chr2R 5790462 intergenic not near genes chr2R 5790521 intergenic not near genes chr2R 5790580 intergenic not near genes chr2R_13_5790001 chr2R_5790001 RAL-727 641 chr2R 5869283 5869308 chr2R 5874359 5874384 flea 15 5075 4.0 7.5 5.8 2.2 5101 chr2R 5869283 intergenic not near genes chr2R 5871834 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_15_5870001 chr2R_5870001 RAL-727 642 chr2R 5878935 5878946 chr2R 5879015 5879026 6 80 3.0 8.5 5.8 0.9 91 chr2R 5878935 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879026 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-727 643 chr2R 5878953 5878959 chr2R 5879006 5879039 6 74 2.0 4.5 3.2 1.4 86 chr2R 5878953 intergenic CG44438 - chr2R 5878996 intergenic CG44438 - chr2R 5879039 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-727 644 chr2R 5879359 5879381 chr2R 5879540 5879572 12 188 4.0 5.5 4.8 2.1 213 chr2R 5879359 3` UTR CG44438 - chr2R 5879466 3` UTR CG44438 - chr2R 5879572 exon CG44438 - chr2R_12_5875001 chr2R_5875001 RAL-727 645 chr2R 5902160 5902173 chr2R 5909719 5909732 17.6 7 7559 5.5 2.0 3.8 1.5 7572 chr2R 5902160 intron CG43366 + chr2R 5905946 intron CG43366 + chr2R 5909732 intron CG43366 + chr2R_7_5905001 chr2R_5905001 RAL-727 646 chr2R 5902176 5902192 chr2R 5909713 5909746 17.6 5 7554 2.0 2.0 2.0 1.7 7570 chr2R 5902176 intron CG43366 + chr2R 5905961 intron CG43366 + chr2R 5909746 intron CG43366 + chr2R_5_5905001 chr2R_5905001 RAL-727 647 chr2R 6033440 6033465 chr2R 6033525 6033549 4 84 5.5 2.5 4.0 0.8 109 chr2R 6033440 intron SCAP - chr2R 6033494 intron SCAP - chr2R 6033549 intron SCAP - chr2R_4_6030001 chr2R_6030001 RAL-727 648 chr2R 6096711 6096748 chr2R 6101909 6101917 BS 7 5187 11.0 4.5 7.8 0.8 5206 chr2R 6096711 intron EcR - chr2R 6099314 intron EcR - chr2R 6101917 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-727 649 chr2R 6129326 6129358 chr2R 6129404 6129436 15 77 4.5 4.0 4.2 2.9 110 chr2R 6129326 intron EcR - chr2R 6129381 intron EcR - chr2R 6129436 intron EcR - chr2R_15_6125001 chr2R_6125001 RAL-727 650 chr2R 6175594 6175621 chr2R 6175681 6175708 16 87 2.5 2.0 2.2 5.0 114 chr2R 6175594 3` UTR Cyp6w1 + chr2R 6175651 3` UTR Cyp6w1 + chr2R 6175708 3` UTR Cyp6w1 + chr2R_16_6175001 chr2R_6175001 RAL-727 651 chr2R 6178678 6178711 chr2R 6178765 6178798 17 87 4.0 7.0 5.5 2.6 120 chr2R 6178678 intergenic not near genes chr2R 6178738 intergenic not near genes chr2R 6178798 intergenic not near genes chr2R_17_6175001 chr2R_6175001 RAL-727 652 chr2R 6194687 6194704 chr2R 6194769 6194787 8 82 10.0 9.5 9.8 0.7 100 chr2R 6194687 intron Ptr - chr2R 6194737 intron Ptr - chr2R 6194787 intron Ptr - chr2R_8_6190001 chr2R_6190001 RAL-727 653 chr2R 6494529 6494537 chr2R 6499291 6499299 F-element 6 4762 5.5 5.0 5.2 1.0 4770 chr2R 6494529 intergenic not near genes chr2R 6496914 intergenic not near genes chr2R 6499299 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-727 654 chr2R 6494546 6494554 chr2R 6499289 6499310 F-element 4 4756 2.0 5.0 3.5 0.9 4764 chr2R 6494546 intergenic not near genes chr2R 6496928 intergenic not near genes chr2R 6499310 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-727 655 chr2R 6518073 6518108 chr2R 6518158 6518191 11 84 2.5 4.0 3.2 2.6 118 chr2R 6518073 intron jing + chr2R 6518132 intron jing + chr2R 6518191 intron jing + chr2R_11_6515001 chr2R_6515001 RAL-727 656 chr2R 6579775 6579801 chr2R 6584861 6584887 flea 8 5085 3.0 3.5 3.2 1.9 5112 chr2R 6579775 intron jing + chr2R 6582331 intron jing + chr2R 6584887 intron jing + chr2R_8_6580001 chr2R_6580001 RAL-727 657 chr2R 6594049 6594056 chr2R 6594185 6594192 6 136 0.0 11.0 5.5 0.9 143 chr2R 6594049 intron jing + chr2R 6594120 intron jing + chr2R 6594192 intron jing + chr2R_6_6590001 chr2R_6590001 RAL-727 658 chr2R 6597874 6597899 chr2R 6597962 6597987 13 87 5.0 8.5 6.8 1.7 113 chr2R 6597874 intron jing + chr2R 6597930 intron jing + chr2R 6597987 intron jing + chr2R_13_6595001 chr2R_6595001 RAL-727 659 chr2R 6607928 6607956 chr2R 6608030 6608058 13 101 5.0 7.0 6.0 1.9 130 chr2R 6607928 intron jing + chr2R 6607993 intron jing + chr2R 6608058 intron jing + chr2R_13_6605001 chr2R_6605001 RAL-727 660 chr2R 6796067 6796095 chr2R 6796158 6796186 14 91 3.0 6.0 4.5 2.5 119 chr2R 6796067 intron Epac - chr2R 6796126 intron Epac - chr2R 6796186 intron Epac - chr2R_14_6795001 chr2R_6795001 RAL-727 661 chr2R 6796352 6796370 chr2R 6796596 6796613 5 244 8.0 5.5 6.8 0.6 261 chr2R 6796352 intron Epac - chr2R 6796482 intron Epac - chr2R 6796613 intron Epac - chr2R_5_6795001 chr2R_6795001 RAL-727 662 chr2R 6846312 6846329 chr2R 6846389 6846405 7 77 2.5 7.5 5.0 1.2 93 chr2R 6846312 intergenic not near genes chr2R 6846358 intergenic not near genes chr2R 6846405 intergenic not near genes chr2R_7_6845001 chr2R_6845001 RAL-727 663 chr2R 6876232 6876251 chr2R 6876304 6876326 12 80 6.0 10.5 8.2 1.3 94 chr2R 6876232 intron,intron CR44169 +,Spn42Da - chr2R 6876279 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876326 5` UTR,intron CR44169 +,Spn42Da - chr2R_12_6875001 chr2R_6875001 RAL-727 664 chr2R 6952164 6952183 chr2R 6959744 6959763 opus 8 7579 4.0 6.0 5.0 1.3 7599 chr2R 6952164 intron,intron mim -,CheB42c - chr2R 6955964 intron,intron mim -,CheB42c - chr2R 6959763 intron,intron mim -,CheB42c - chr2R_8_6955001 chr2R_6955001 RAL-727 665 chr2R 6964146 6964317 chr2R 6964234 6964394 31 83 4.0 5.0 4.5 5.6 248 chr2R 6964146 intron,intron mim -,CheB42c - chr2R 6964270 intron,intron mim -,CheB42c - chr2R 6964394 intron,intron mim -,CheB42c - chr2R_31_6960001 chr2R_6960001 RAL-727 666 chr2R 7103379 7103415 chr2R 7103455 7103459 5 58 2.5 2.5 2.5 1.4 80 chr2R 7103379 intron esn + chr2R 7103419 intron esn + chr2R 7103459 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-727 667 chr2R 7160569 7160581 chr2R 7160647 7160659 8 78 4.0 6.5 5.2 1.3 90 chr2R 7160569 intron pk + chr2R 7160614 intron pk + chr2R 7160659 intron pk + chr2R_8_7160001 chr2R_7160001 RAL-727 668 chr2R 7189852 7189869 chr2R 7190323 7190340 7 471 2.5 6.5 4.5 1.3 488 chr2R 7189852 intron pk + chr2R 7190096 intron pk + chr2R 7190340 intron pk + chr2R_7_7190001 chr2R_7190001 RAL-727 669 chr2R 7196565 7196595 chr2R 7201340 7201370 F-element 15 4775 8.0 4.0 6.0 2.1 4805 chr2R 7196565 intron pk + chr2R 7198968 intron pk + chr2R 7201370 intron pk + chr2R_15_7195001 chr2R_7195001 RAL-727 670 chr2R 7235832 7235851 chr2R 7240910 7240943 jockey 8 5085 8.5 3.0 5.8 1.2 5111 chr2R 7235832 intergenic not near genes chr2R 7238388 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-727 671 chr2R 7243076 7243081 chr2R 7243178 7243182 4 101 0.0 4.5 2.2 1.2 106 chr2R 7243076 3` UTR Ady43A - chr2R 7243129 3` UTR Ady43A - chr2R 7243182 3` UTR Ady43A - chr2R_4_7240001 chr2R_7240001 RAL-727 672 chr2R 7243083 7243101 chr2R 7243177 7243203 11 99 0.0 4.5 2.2 3.4 120 chr2R 7243083 3` UTR Ady43A - chr2R 7243143 3` UTR Ady43A - chr2R 7243203 3` UTR Ady43A - chr2R_11_7240001 chr2R_7240001 RAL-727 673 chr2R 7290190 7290221 chr2R 7290292 7290323 14 102 4.0 4.5 4.2 2.7 133 chr2R 7290190 intron pwn + chr2R 7290256 intron pwn + chr2R 7290323 intron pwn + chr2R_14_7290001 chr2R_7290001 RAL-727 674 chr2R 7310762 7310796 chr2R 7310844 7310868 7 79 3.0 3.5 3.2 1.7 106 chr2R 7310762 intergenic not near genes chr2R 7310815 intergenic not near genes chr2R 7310868 intergenic not near genes chr2R_7_7310001 chr2R_7310001 RAL-727 675 chr2R 7328128 7328151 chr2R 7328239 7328262 10 108 2.0 4.5 3.2 2.4 134 chr2R 7328128 intron,intron Dscam1 -,CR45129 + chr2R 7328195 intron,intron Dscam1 -,CR45129 + chr2R 7328262 intron,intron Dscam1 -,CR45129 + chr2R_10_7325001 chr2R_7325001 RAL-727 676 chr2R 7353392 7353410 chr2R 7353498 7353516 7 106 7.0 6.0 6.5 0.9 124 chr2R 7353392 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353516 intron Dscam1 - chr2R_7_7350001 chr2R_7350001 RAL-727 677 chr2R 7420420 7420424 chr2R 7420530 7420539 5 114 0.0 9.5 4.8 0.9 119 chr2R 7420420 intron so + chr2R 7420480 intron so + chr2R 7420539 intron so + chr2R_5_7420001 chr2R_7420001 RAL-727 678 chr2R 7434898 7434922 chr2R 7439199 7439221 Juan 9 4300 4.0 9.0 6.5 1.2 4323 chr2R 7434898 intergenic so + chr2R 7437060 intergenic not near genes chr2R 7439221 intergenic not near genes chr2R_9_7435001 chr2R_7435001 RAL-727 679 chr2R 7608406 7608436 chr2R 7613609 7613635 I-element 8 5201 6.0 5.0 5.5 1.2 5229 chr2R 7608406 intron CG1358 - chr2R 7611020 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_8_7610001 chr2R_7610001 RAL-727 680 chr2R 7642868 7642892 chr2R 7642948 7642972 18 79 5.5 6.5 6.0 2.6 104 chr2R 7642868 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_18_7640001 chr2R_7640001 RAL-727 681 chr2R 7815670 7815702 chr2R 7822139 7822171 Burdock 18 6466 9.5 4.5 7.0 2.2 6501 chr2R 7815670 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_18_7815001 chr2R_7815001 RAL-727 682 chr2R 7851258 7851291 chr2R 7851344 7851372 10 84 2.5 4.0 3.2 2.4 114 chr2R 7851258 intron Dgk - chr2R 7851315 intron Dgk - chr2R 7851372 intron Dgk - chr2R_10_7850001 chr2R_7850001 RAL-727 683 chr2R 7869189 7869221 chr2R 7873975 7874002 Doc 15 4785 6.0 5.0 5.5 2.3 4813 chr2R 7869189 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874002 intron Dgk - chr2R_15_7870001 chr2R_7870001 RAL-727 684 chr2R 7897142 7897156 chr2R 7897231 7897245 6 88 0.0 11.5 5.8 0.9 103 chr2R 7897142 intron CG30377 + chr2R 7897194 intron CG30377 + chr2R 7897245 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-727 685 chr2R 7915716 7915745 chr2R 7915808 7915833 13 92 2.5 6.5 4.5 2.4 117 chr2R 7915716 intron CG12159 - chr2R 7915774 intron CG12159 - chr2R 7915833 intron CG12159 - chr2R_13_7915001 chr2R_7915001 RAL-727 686 chr2R 7997015 7997040 chr2R 7997103 7997110 4 81 2.0 8.0 5.0 0.7 95 chr2R 7997015 intron Hey - chr2R 7997062 intron Hey - chr2R 7997110 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-727 687 chr2R 8015670 8015682 chr2R 8017672 8017688 5 2013 0.5 8.5 4.5 0.9 2018 chr2R 8015670 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017688 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-727 688 chr2R 8026810 8026833 chr2R 8026886 8026909 9 76 4.0 2.5 3.2 2.1 99 chr2R 8026810 intergenic CR45267 + chr2R 8026860 intergenic CR45267 + chr2R 8026909 intergenic CR45267 + chr2R_9_8025001 chr2R_8025001 RAL-727 689 chr2R 8076678 8076709 chr2R 8076757 8076789 26 78 8.5 5.5 7.0 3.2 111 chr2R 8076678 intron lig + chr2R 8076734 intron lig + chr2R 8076789 intron lig + chr2R_26_8075001 chr2R_8075001 RAL-727 690 chr2R 8209053 8209087 chr2R 8209137 8209161 15 81 3.5 1.5 2.5 4.3 108 chr2R 8209053 intron LRP1 + chr2R 8209107 intron LRP1 + chr2R 8209161 intron LRP1 + chr2R_15_8205001 chr2R_8205001 RAL-727 691 chr2R 8231698 8231732 chr2R 8231777 8231811 17 79 4.0 4.5 4.2 3.3 113 chr2R 8231698 intron dpn - chr2R 8231754 intron dpn - chr2R 8231811 intron dpn - chr2R_17_8230001 chr2R_8230001 RAL-727 692 chr2R 8236036 8236064 chr2R 8236117 8236143 5 81 3.0 2.5 2.8 1.3 107 chr2R 8236036 intergenic not near genes chr2R 8236090 intergenic not near genes chr2R 8236143 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-727 693 chr2R 8249560 8249594 chr2R 8249642 8249676 21 80 6.0 1.0 3.5 4.7 116 chr2R 8249560 5` UTR CG44439 - chr2R 8249618 intergenic CG44439 - chr2R 8249676 intergenic CG44439 - chr2R_21_8245001 chr2R_8245001 RAL-727 694 chr2R 8297429 8297454 chr2R 8297508 8297532 17 79 3.5 4.0 3.8 3.5 103 chr2R 8297429 intergenic not near genes chr2R 8297480 intergenic not near genes chr2R 8297532 intergenic not near genes chr2R_17_8295001 chr2R_8295001 RAL-727 695 chr2R 8330863 8330890 chr2R 8331349 8331376 roo 13 485 6.0 8.0 7.0 1.6 513 chr2R 8330863 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-727 696 chr2R 8454932 8454954 chr2R 8455875 8455897 16 943 48.0 55.5 51.8 0.3 965 chr2R 8454932 exon Mal-A2 + chr2R 8455414 exon Mal-A2 + chr2R 8455897 intergenic Mal-A3 -,Mal-A2 + chr2R_16_8455001 chr2R_8455001 RAL-727 697 chr2R 8483963 8483985 chr2R 8484039 8484060 9 74 3.5 6.0 4.8 1.6 97 chr2R 8483963 intron mtt - chr2R 8484012 intron mtt - chr2R 8484060 intron mtt - chr2R_9_8480001 chr2R_8480001 RAL-727 698 chr2R 8483986 8483988 chr2R 8484038 8484051 6 62 3.0 5.5 4.2 1.2 65 chr2R 8483986 intron mtt - chr2R 8484018 intron mtt - chr2R 8484051 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-727 699 chr2R 8489422 8489454 chr2R 8496429 8496462 10 7011 26.0 55.0 40.5 0.2 7040 chr2R 8489422 intron mtt - chr2R 8492942 intron mtt - chr2R 8496462 intron mtt - chr2R_10_8490001 chr2R_8490001 RAL-727 700 chr2R 8536199 8536231 chr2R 8536431 8536461 7 231 4.5 2.0 3.2 1.7 262 chr2R 8536199 intergenic not near genes chr2R 8536330 intergenic not near genes chr2R 8536461 intergenic not near genes chr2R_7_8535001 chr2R_8535001 RAL-727 701 chr2R 8612579 8612604 chr2R 8612656 8612681 7 77 4.5 2.0 3.2 1.7 102 chr2R 8612579 intron CG8642 - chr2R 8612630 intron CG8642 - chr2R 8612681 intron CG8642 - chr2R_7_8610001 chr2R_8610001 RAL-727 702 chr2R 8635909 8635933 chr2R 8635987 8636011 5 74 0.0 5.5 2.8 1.3 102 chr2R 8635909 intergenic not near genes chr2R 8635960 intergenic not near genes chr2R 8636011 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-727 703 chr2R 8668428 8668455 chr2R 8668516 8668543 12 86 7.5 4.5 6.0 1.7 115 chr2R 8668428 intron Acsl + chr2R 8668486 intron Acsl + chr2R 8668543 intron Acsl + chr2R_12_8665001 chr2R_8665001 RAL-727 704 chr2R 8722764 8722776 chr2R 8723005 8723017 pogo 7 240 11.0 4.0 7.5 0.8 253 chr2R 8722764 intron CG14767 - chr2R 8722890 intron CG14767 - chr2R 8723017 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-727 705 chr2R 8722777 8722795 chr2R 8723003 8723036 pogo 6 234 6.5 4.0 5.2 1.0 259 chr2R 8722777 intron CG14767 - chr2R 8722906 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-727 706 chr2R 8747997 8748029 chr2R 8748076 8748108 19 78 5.0 8.0 6.5 2.5 111 chr2R 8747997 intron CG8740 + chr2R 8748052 intron CG8740 + chr2R 8748108 intron CG8740 + chr2R_19_8745001 chr2R_8745001 RAL-727 707 chr2R 8759761 8759791 chr2R 8759840 8759870 12 78 2.0 2.0 2.0 4.0 109 chr2R 8759761 intergenic CG8740 + chr2R 8759816 intergenic CG8740 + chr2R 8759870 intergenic CG8740 + chr2R_12_8755001 chr2R_8755001 RAL-727 708 chr2R 8777926 8777946 chr2R 8784130 8784150 diver 11 6203 2.5 4.5 3.5 2.4 6224 chr2R 8777926 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784150 intergenic not near genes chr2R_11_8780001 chr2R_8780001 RAL-727 709 chr2R 8967421 8967686 chr2R 8967568 8967802 28 145 13.5 4.5 9.0 2.8 381 chr2R 8967421 intron CG8216 - chr2R 8967612 intron CG8216 - chr2R 8967802 intron CG8216 - chr2R_28_8965001 chr2R_8965001 RAL-727 710 chr2R 8976628 8976639 chr2R 8976688 8976712 4 70 2.5 4.0 3.2 1.0 84 chr2R 8976628 intron CG8213 - chr2R 8976670 intron CG8213 - chr2R 8976712 intron CG8213 - chr2R_4_8975001 chr2R_8975001 RAL-727 711 chr2R 8983667 8983691 chr2R 8983748 8983772 12 81 8.5 5.5 7.0 1.5 105 chr2R 8983667 intron CG8213 - chr2R 8983720 intron CG8213 - chr2R 8983772 intron CG8213 - chr2R_12_8980001 chr2R_8980001 RAL-727 712 chr2R 9047425 9047437 chr2R 9047520 9047532 4 95 3.0 3.0 3.0 1.0 107 chr2R 9047425 intron CG13743 - chr2R 9047478 intron CG13743 - chr2R 9047532 intron CG13743 - chr2R_4_9045001 chr2R_9045001 RAL-727 713 chr2R 9132101 9132137 chr2R 9132178 9132214 17 76 3.0 7.0 5.0 2.8 113 chr2R 9132101 intergenic CG18659 -,Hydr1 + chr2R 9132158 intergenic CG18659 -,Hydr1 + chr2R 9132214 intergenic CG18659 -,Hydr1 + chr2R_17_9130001 chr2R_9130001 RAL-727 714 chr2R 9151303 9151335 chr2R 9157773 9157805 Burdock 18 6469 4.5 4.5 4.5 3.3 6502 chr2R 9151303 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_18_9150001 chr2R_9150001 RAL-727 715 chr2R 9210967 9210970 chr2R 9211059 9211062 4 92 5.5 0.0 2.8 1.1 95 chr2R 9210967 intergenic not near genes chr2R 9211014 intergenic not near genes chr2R 9211062 intergenic not near genes chr2R_4_9210001 chr2R_9210001 RAL-727 716 chr2R 9212696 9212721 chr2R 9213182 9213207 roo 7 486 3.0 7.0 5.0 1.2 511 chr2R 9212696 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-727 717 chr2R 9213621 9213646 chr2R 9213705 9213730 7 84 0.0 4.0 2.0 2.3 109 chr2R 9213621 5` UTR CR45309 + chr2R 9213676 5` UTR CR45309 + chr2R 9213730 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-727 718 chr2R 9230224 9230232 chr2R 9230304 9230310 4 79 6.0 4.5 5.2 0.6 86 chr2R 9230224 intron hig - chr2R 9230267 intron hig - chr2R 9230310 intron hig - chr2R_4_9230001 chr2R_9230001 RAL-727 719 chr2R 9236605 9236626 chr2R 9236692 9236711 8 86 5.5 6.5 6.0 1.1 106 chr2R 9236605 intron hig - chr2R 9236658 intron hig - chr2R 9236711 intron hig - chr2R_8_9235001 chr2R_9235001 RAL-727 720 chr2R 9248022 9248030 chr2R 9248082 9248083 4 69 0.0 5.5 2.8 1.1 61 chr2R 9248022 intergenic not near genes chr2R 9248052 intergenic not near genes chr2R 9248083 intergenic not near genes chr2R_4_9245001 chr2R_9245001 RAL-727 721 chr2R 9281518 9281544 chr2R 9281594 9281620 20 75 2.5 2.5 2.5 5.7 102 chr2R 9281518 intron Pkn - chr2R 9281569 intron Pkn - chr2R 9281620 intron Pkn - chr2R_20_9280001 chr2R_9280001 RAL-727 722 chr2R 9368131 9368153 chr2R 9368207 9368228 7 73 2.0 1.5 1.8 2.5 97 chr2R 9368131 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368228 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-727 723 chr2R 9480076 9480106 chr2R 9490607 9490634 roo 13 10529 2.0 5.5 3.8 2.7 10558 chr2R 9480076 intergenic not near genes chr2R 9485355 intergenic not near genes chr2R 9490634 intergenic not near genes chr2R_13_9485001 chr2R_9485001 RAL-727 724 chr2R 9541623 9541651 chr2R 9541700 9541728 12 77 0.0 3.0 1.5 4.8 105 chr2R 9541623 intergenic brp +,CG1888 - chr2R 9541676 intergenic brp +,CG1888 - chr2R 9541728 intergenic brp +,CG1888 - chr2R_12_9540001 chr2R_9540001 RAL-727 725 chr2R 9726612 9726646 chr2R 9734163 9734197 17.6 8 7551 3.0 5.5 4.2 1.5 7585 chr2R 9726612 intron sqa - chr2R 9730404 intron sqa - chr2R 9734197 intron sqa - chr2R_8_9730001 chr2R_9730001 RAL-727 726 chr2R 9774457 9774486 chr2R 9775006 9775035 12 549 4.5 6.0 5.2 1.9 578 chr2R 9774457 intron CG1688 - chr2R 9774746 intron CG1688 - chr2R 9775035 intron CG1688 - chr2R_12_9770001 chr2R_9770001 RAL-727 727 chr2R 9871051 9871070 chr2R 9871537 9871541 roo 8 483 6.5 11.5 9.0 0.8 490 chr2R 9871051 intron cbx - chr2R 9871296 intron cbx - chr2R 9871541 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-727 728 chr2R 9923862 9923888 chr2R 9923935 9923967 11 78 6.0 11.5 8.8 1.1 105 chr2R 9923862 intron Mef2 - chr2R 9923914 intron Mef2 - chr2R 9923967 intron Mef2 - chr2R_11_9920001 chr2R_9920001 RAL-727 729 chr2R 9933262 9933279 chr2R 9933346 9933363 13 84 9.0 9.0 9.0 1.3 101 chr2R 9933262 intron Mef2 - chr2R 9933312 intron Mef2 - chr2R 9933363 intron Mef2 - chr2R_13_9930001 chr2R_9930001 RAL-727 730 chr2R 9940746 9940782 chr2R 9940828 9940864 16 78 5.5 5.0 5.2 2.6 118 chr2R 9940746 5` UTR Mef2 - chr2R 9940805 5` UTR Mef2 - chr2R 9940864 5` UTR Mef2 - chr2R_16_9940001 chr2R_9940001 RAL-727 731 chr2R 9945449 9945451 chr2R 9945629 9945643 BS 4 188 10.5 3.0 6.8 0.5 194 chr2R 9945449 intron Mef2 - chr2R 9945546 intron Mef2 - chr2R 9945643 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-727 732 chr2R 9945454 9945470 chr2R 9945627 9945652 BS 7 183 8.0 3.0 5.5 1.1 198 chr2R 9945454 intron Mef2 - chr2R 9945553 intron Mef2 - chr2R 9945652 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-727 733 chr2R 10005559 10005585 chr2R 10005656 10005682 20 96 4.5 2.5 3.5 4.4 123 chr2R 10005559 intron Pka-R2 - chr2R 10005620 intron Pka-R2 - chr2R 10005682 intron Pka-R2 - chr2R_20_10005001 chr2R_10005001 RAL-727 734 chr2R 10005854 10005864 chr2R 10007018 10007029 1360 5 1165 5.5 2.5 4.0 1.0 1175 chr2R 10005854 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007029 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-727 735 chr2R 10005868 10005879 chr2R 10007016 10007034 1360 5 1154 2.0 2.5 2.2 1.6 1166 chr2R 10005868 intron Pka-R2 - chr2R 10006451 intron Pka-R2 - chr2R 10007034 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-727 736 chr2R 10047812 10047843 chr2R 10047895 10047926 11 83 6.5 6.5 6.5 1.5 114 chr2R 10047812 intron oys - chr2R 10047869 intron oys - chr2R 10047926 intron oys - chr2R_11_10045001 chr2R_10045001 RAL-727 737 chr2R 10053523 10053548 chr2R 10053626 10053651 10 103 5.0 3.0 4.0 2.0 128 chr2R 10053523 intron magu + chr2R 10053587 intron magu + chr2R 10053651 intron magu + chr2R_10_10050001 chr2R_10050001 RAL-727 738 chr2R 10132212 10132217 chr2R 10132293 10132298 7 81 4.0 8.0 6.0 1.0 86 chr2R 10132212 intron gem + chr2R 10132255 intron gem + chr2R 10132298 intron gem + chr2R_7_10130001 chr2R_10130001 RAL-727 739 chr2R 10147642 10147677 chr2R 10147724 10147760 23 82 6.5 4.5 5.5 3.5 118 chr2R 10147642 intron KCNQ - chr2R 10147701 intron KCNQ - chr2R 10147760 intron KCNQ - chr2R_23_10145001 chr2R_10145001 RAL-727 740 chr2R 10171111 10171146 chr2R 10171195 10171230 14 84 2.0 3.0 2.5 4.0 119 chr2R 10171111 intron KCNQ - chr2R 10171170 intron KCNQ - chr2R 10171230 intron KCNQ - chr2R_14_10170001 chr2R_10170001 RAL-727 741 chr2R 10176124 10176138 chr2R 10176202 10176205 9 77 7.5 5.0 6.2 1.2 81 chr2R 10176124 intron KCNQ - chr2R 10176164 intron KCNQ - chr2R 10176205 intron KCNQ - chr2R_9_10175001 chr2R_10175001 RAL-727 742 chr2R 10176877 10176913 chr2R 10186044 10186080 roo 14 9167 4.0 4.0 4.0 2.8 9203 chr2R 10176877 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186080 intron KCNQ - chr2R_14_10180001 chr2R_10180001 RAL-727 743 chr2R 10189996 10190011 chr2R 10190072 10190084 4 73 6.0 5.5 5.8 0.6 88 chr2R 10189996 intron KCNQ - chr2R 10190040 intron KCNQ - chr2R 10190084 intron KCNQ - chr2R_4_10190001 chr2R_10190001 RAL-727 744 chr2R 10190014 10190022 chr2R 10190071 10190097 7 69 1.5 5.5 3.5 1.6 83 chr2R 10190014 intron KCNQ - chr2R 10190056 intron KCNQ - chr2R 10190097 intron KCNQ - chr2R_7_10190001 chr2R_10190001 RAL-727 745 chr2R 10234981 10234996 chr2R 10235070 10235085 7 89 4.5 0.0 2.2 2.2 104 chr2R 10234981 intron Hr46 - chr2R 10235033 intron Hr46 - chr2R 10235085 intron Hr46 - chr2R_7_10235001 chr2R_10235001 RAL-727 746 chr2R 10290115 10290140 chr2R 10290196 10290221 12 80 2.0 3.5 2.8 3.2 106 chr2R 10290115 intron CAP + chr2R 10290168 intron CAP + chr2R 10290221 intron CAP + chr2R_12_10290001 chr2R_10290001 RAL-727 747 chr2R 10313315 10313354 chr2R 10313403 10313442 20 88 2.5 4.0 3.2 4.8 127 chr2R 10313315 intergenic not near genes chr2R 10313378 intergenic not near genes chr2R 10313442 intergenic Ndg + chr2R_20_10310001 chr2R_10310001 RAL-727 748 chr2R 10318514 10318544 chr2R 10318600 10318630 9 86 3.5 2.5 3.0 2.2 116 chr2R 10318514 intron Ndg + chr2R 10318572 intron Ndg + chr2R 10318630 intron Ndg + chr2R_9_10315001 chr2R_10315001 RAL-727 749 chr2R 10352681 10352698 chr2R 10352751 10352766 11 72 5.0 4.5 4.8 1.9 85 chr2R 10352681 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352724 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352766 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-727 750 chr2R 10354271 10354293 chr2R 10354350 10354372 6 78 3.0 5.0 4.0 1.2 101 chr2R 10354271 intron,3` UTR CG42732 -,CG12907 + chr2R 10354322 intron,3` UTR CG42732 -,CG12907 + chr2R 10354372 intron,3` UTR CG42732 -,CG12907 + chr2R_6_10350001 chr2R_10350001 RAL-727 751 chr2R 10363862 10363898 chr2R 10363941 10363977 17 79 3.5 5.0 4.2 3.3 115 chr2R 10363862 intron CG42732 - chr2R 10363920 intron CG42732 - chr2R 10363977 intron CG42732 - chr2R_17_10360001 chr2R_10360001 RAL-727 752 chr2R 10385235 10385257 chr2R 10385340 10385354 8 107 2.5 5.5 4.0 1.6 119 chr2R 10385235 intron CG42732 - chr2R 10385294 intron CG42732 - chr2R 10385354 intron CG42732 - chr2R_8_10385001 chr2R_10385001 RAL-727 753 chr2R 10387987 10387996 chr2R 10388072 10388093 4 92 0.0 3.5 1.8 1.4 106 chr2R 10387987 intron CG42732 - chr2R 10388040 intron CG42732 - chr2R 10388093 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-727 754 chr2R 10417403 10417432 chr2R 10417546 10417556 5 135 28.5 21.5 25.0 0.2 153 chr2R 10417403 intergenic CG42732 - chr2R 10417480 intergenic CG42732 - chr2R 10417556 intergenic not near genes chr2R_5_10415001 chr2R_10415001 RAL-727 755 chr2R 10469020 10469056 chr2R 10469146 10469182 23 124 2.0 4.0 3.0 5.8 162 chr2R 10469020 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_23_10465001 chr2R_10465001 RAL-727 756 chr2R 10551100 10551112 chr2R 10551185 10551197 11 85 0.5 8.5 4.5 2.0 97 chr2R 10551100 intergenic not near genes chr2R 10551148 intergenic not near genes chr2R 10551197 intergenic not near genes chr2R_11_10550001 chr2R_10550001 RAL-727 757 chr2R 10563552 10563582 chr2R 10563632 10563662 7 78 4.0 13.0 8.5 0.7 110 chr2R 10563552 intron psq + chr2R 10563607 intron psq + chr2R 10563662 intron psq + chr2R_7_10560001 chr2R_10560001 RAL-727 758 chr2R 10574626 10574637 chr2R 10574708 10574719 5 82 8.5 8.0 8.2 0.5 93 chr2R 10574626 intron psq + chr2R 10574672 intron psq + chr2R 10574719 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-727 759 chr2R 10585573 10585589 chr2R 10594146 10594162 Tirant 18 8577 4.0 6.5 5.2 2.9 8589 chr2R 10585573 intron psq + chr2R 10589868 intron psq + chr2R 10594162 intron psq + chr2R_18_10585001 chr2R_10585001 RAL-727 760 chr2R 10595784 10595790 chr2R 10595872 10595878 5 88 8.5 0.0 4.2 1.0 94 chr2R 10595784 intron psq + chr2R 10595831 intron psq + chr2R 10595878 intron psq + chr2R_5_10595001 chr2R_10595001 RAL-727 761 chr2R 10622352 10622381 chr2R 10637117 10637146 mdg1 8 14765 4.0 8.0 6.0 1.1 14794 chr2R 10622352 intron CG11883 + chr2R 10629749 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_8_10625001 chr2R_10625001 RAL-727 762 chr2R 10653205 10653235 chr2R 10653282 10653314 6 74 4.5 5.0 4.8 1.0 109 chr2R 10653205 intergenic not near genes chr2R 10653260 intergenic not near genes chr2R 10653314 intergenic not near genes chr2R_6_10650001 chr2R_10650001 RAL-727 763 chr2R 10728585 10728614 chr2R 10728674 10728703 13 87 6.5 4.0 5.2 2.1 118 chr2R 10728585 intron Rab3 - chr2R 10728644 5` UTR Rab3 - chr2R 10728703 5` UTR Rab3 - chr2R_13_10725001 chr2R_10725001 RAL-727 764 chr2R 10781405 10781423 chr2R 10781757 10781782 16 359 3.5 2.0 2.8 4.2 377 chr2R 10781405 intron CG33144 - chr2R 10781594 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_16_10780001 chr2R_10780001 RAL-727 765 chr2R 10790141 10790177 chr2R 10790229 10790262 20 87 5.5 11.5 8.5 2.1 121 chr2R 10790141 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790262 intron CG33144 - chr2R_20_10790001 chr2R_10790001 RAL-727 766 chr2R 10922778 10922790 chr2R 10922864 10922876 4 86 0.0 5.5 2.8 1.1 98 chr2R 10922778 intergenic not near genes chr2R 10922827 intergenic not near genes chr2R 10922876 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-727 767 chr2R 10937810 10937832 chr2R 10937935 10937970 10 137 0.5 3.5 2.0 3.3 160 chr2R 10937810 intergenic not near genes chr2R 10937890 intergenic not near genes chr2R 10937970 intergenic Spn47C - chr2R_10_10935001 chr2R_10935001 RAL-727 768 chr2R 10948034 10948060 chr2R 10955582 10955608 17.6 9 7545 1.5 5.0 3.2 2.1 7574 chr2R 10948034 intergenic not near genes chr2R 10951821 intergenic not near genes chr2R 10955608 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-727 769 chr2R 10959090 10959106 chr2R 10959169 10959185 6 79 4.5 1.5 3.0 1.5 95 chr2R 10959090 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959185 intergenic not near genes chr2R_6_10955001 chr2R_10955001 RAL-727 770 chr2R 10979656 10979685 chr2R 10980126 10980149 297 9 466 3.0 4.0 3.5 2.0 493 chr2R 10979656 intergenic not near genes chr2R 10979902 intergenic not near genes chr2R 10980149 intergenic not near genes chr2R_9_10975001 chr2R_10975001 RAL-727 771 chr2R 11009812 11009843 chr2R 11018986 11019016 roo 13 9172 4.5 5.0 4.8 2.2 9204 chr2R 11009812 intron luna - chr2R 11014414 intron luna - chr2R 11019016 intron luna - chr2R_13_11010001 chr2R_11010001 RAL-727 772 chr2R 11019882 11019900 chr2R 11024948 11024951 jockey 6 5062 1.5 4.5 3.0 1.5 5069 chr2R 11019882 intron luna - chr2R 11022416 intron luna - chr2R 11024951 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-727 773 chr2R 11091991 11092000 chr2R 11092069 11092078 7 77 4.5 5.0 4.8 1.2 87 chr2R 11091991 intron luna - chr2R 11092034 intron luna - chr2R 11092078 intron luna - chr2R_7_11090001 chr2R_11090001 RAL-727 774 chr2R 11102868 11102894 chr2R 11102950 11102976 17 81 3.5 0.5 2.0 5.7 108 chr2R 11102868 intron luna - chr2R 11102922 intron luna - chr2R 11102976 intron luna - chr2R_17_11100001 chr2R_11100001 RAL-727 775 chr2R 11207817 11207850 chr2R 11208005 11208041 BS 18 189 6.0 5.0 5.5 2.8 224 chr2R 11207817 intron shn + chr2R 11207929 intron shn + chr2R 11208041 intron shn + chr2R_18_11205001 chr2R_11205001 RAL-727 776 chr2R 11218737 11218765 chr2R 11218820 11218848 16 80 3.5 6.0 4.8 2.8 111 chr2R 11218737 intron CG9084 - chr2R 11218792 intron CG9084 - chr2R 11218848 intron CG9084 - chr2R_16_11215001 chr2R_11215001 RAL-727 777 chr2R 11262861 11262875 chr2R 11262948 11262962 5 83 2.0 3.0 2.5 1.4 101 chr2R 11262861 intergenic not near genes chr2R 11262912 intergenic not near genes chr2R 11262962 intergenic not near genes chr2R_5_11260001 chr2R_11260001 RAL-727 778 chr2R 11275839 11275866 chr2R 11275939 11275966 14 98 2.5 5.0 3.8 2.9 127 chr2R 11275839 intergenic not near genes chr2R 11275902 intergenic not near genes chr2R 11275966 intergenic not near genes chr2R_14_11275001 chr2R_11275001 RAL-727 779 chr2R 11276803 11276819 chr2R 11276971 11276985 6 168 5.5 4.5 5.0 1.0 182 chr2R 11276803 intergenic not near genes chr2R 11276894 intergenic not near genes chr2R 11276985 intergenic not near genes chr2R_6_11275001 chr2R_11275001 RAL-727 780 chr2R 11292978 11292981 chr2R 11293057 11293057 5 78 6.5 0.0 3.2 1.2 79 chr2R 11292978 exon,3` UTR dare -,CG30033 + chr2R 11293018 5` UTR,3` UTR dare -,CG30033 + chr2R 11293057 5` UTR,3` UTR dare -,CG30033 + chr2R_5_11290001 chr2R_11290001 RAL-727 781 chr2R 11292984 11292990 chr2R 11293049 11293068 4 71 4.0 0.0 2.0 1.3 84 chr2R 11292984 exon,3` UTR dare -,CG30033 + chr2R 11293026 5` UTR,3` UTR dare -,CG30033 + chr2R 11293068 5` UTR,3` UTR dare -,CG30033 + chr2R_4_11290001 chr2R_11290001 RAL-727 782 chr2R 11297621 11297650 chr2R 11301937 11301971 flea 16 4320 9.5 6.0 7.8 1.8 4350 chr2R 11297621 intergenic CG42336 - chr2R 11299796 intergenic not near genes chr2R 11301971 5` UTR CG7741 + chr2R_16_11295001 chr2R_11295001 RAL-727 783 chr2R 11344149 11344156 chr2R 11344245 11344252 6 96 0.0 6.0 3.0 1.5 103 chr2R 11344149 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344252 intergenic alphaTry - chr2R_6_11340001 chr2R_11340001 RAL-727 784 chr2R 11415527 11415549 chr2R 11418676 11418687 opus 5 3147 3.0 13.5 8.2 0.5 3160 chr2R 11415527 intron Drip - chr2R 11417107 intron Drip - chr2R 11418687 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-727 785 chr2R 11415550 11415551 chr2R 11418669 11418692 opus 5 3135 1.5 11.5 6.5 0.7 3142 chr2R 11415550 intron Drip - chr2R 11417121 intron Drip - chr2R 11418692 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-727 786 chr2R 11472655 11472675 chr2R 11473850 11473872 pogo 9 1195 8.5 4.0 6.2 1.2 1217 chr2R 11472655 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473872 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-727 787 chr2R 11540748 11540772 chr2R 11540833 11540859 8 87 6.5 8.5 7.5 0.9 111 chr2R 11540748 intergenic not near genes chr2R 11540804 intergenic not near genes chr2R 11540859 intergenic not near genes chr2R_8_11540001 chr2R_11540001 RAL-727 788 chr2R 11555399 11555402 chr2R 11555732 11555737 4 334 8.0 1.0 4.5 0.7 338 chr2R 11555399 intergenic not near genes chr2R 11555568 intergenic not near genes chr2R 11555737 intergenic not near genes chr2R_4_11555001 chr2R_11555001 RAL-727 789 chr2R 11614622 11614799 chr2R 11614710 11614887 16 88 7.0 4.0 5.5 2.5 265 chr2R 11614622 intron tou - chr2R 11614754 intron tou - chr2R 11614887 intron tou - chr2R_16_11610001 chr2R_11610001 RAL-727 790 chr2R 11662034 11662066 chr2R 11662110 11662137 22 70 9.5 8.0 8.8 2.2 103 chr2R 11662034 intron Roc2 - chr2R 11662086 intron Roc2 - chr2R 11662137 intron Roc2 - chr2R_22_11660001 chr2R_11660001 RAL-727 791 chr2R 11667382 11667402 chr2R 11667474 11667496 6 93 3.0 3.0 3.0 1.5 114 chr2R 11667382 intron,intron Roc2 -,Tret1-1 + chr2R 11667439 intron,intron Roc2 -,Tret1-1 + chr2R 11667496 intron,intron Roc2 -,Tret1-1 + chr2R_6_11665001 chr2R_11665001 RAL-727 792 chr2R 11673832 11673855 chr2R 11677363 11677373 5 3528 2.5 14.5 8.5 0.5 3541 chr2R 11673832 intron,intron Roc2 -,Tret1-1 + chr2R 11675602 intron Roc2 - chr2R 11677373 intron,exon Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-727 793 chr2R 11724174 11724190 chr2R 11724256 11724273 7 83 1.5 8.0 4.8 1.2 99 chr2R 11724174 intron pyr + chr2R 11724224 intron pyr + chr2R 11724273 intron pyr + chr2R_7_11720001 chr2R_11720001 RAL-727 794 chr2R 11822984 11823001 chr2R 11823061 11823078 8 77 3.5 3.0 3.2 1.9 94 chr2R 11822984 intergenic not near genes chr2R 11823031 intergenic not near genes chr2R 11823078 intergenic not near genes chr2R_8_11820001 chr2R_11820001 RAL-727 795 chr2R 11977527 11977558 chr2R 11977638 11977668 20 94 28.0 26.0 27.0 0.7 141 chr2R 11977527 3` UTR CG8290 + chr2R 11977598 3` UTR,3` UTR CG8290 +,CG30036 - chr2R 11977668 3` UTR,3` UTR CG8290 +,CG30036 - chr2R_20_11975001 chr2R_11975001 RAL-727 796 chr2R 12022049 12022080 chr2R 12024933 12024963 6 2885 15.5 35.5 25.5 0.2 2914 chr2R 12022049 intergenic not near genes chr2R 12023506 exon CG8964 - chr2R 12024963 5` UTR CG8964 - chr2R_6_12020001 chr2R_12020001 RAL-727 797 chr2R 12124838 12124860 chr2R 12124922 12124944 9 84 3.0 6.0 4.5 1.6 106 chr2R 12124838 intergenic not near genes chr2R 12124891 intergenic not near genes chr2R 12124944 intergenic not near genes chr2R_9_12120001 chr2R_12120001 RAL-727 798 chr2R 12178922 12178942 chr2R 12179002 12179011 9 79 4.0 2.0 3.0 2.2 89 chr2R 12178922 intergenic CR45264 +,EndoG - chr2R 12178966 intergenic CR45264 +,EndoG - chr2R 12179011 intergenic CR45264 +,EndoG -,CG8860 - chr2R_9_12175001 chr2R_12175001 RAL-727 799 chr2R 12186000 12186035 chr2R 12186095 12186130 35 94 6.5 7.0 6.8 4.5 130 chr2R 12186000 intron Cyp6g1 + chr2R 12186065 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_35_12185001 chr2R_12185001 RAL-727 800 chr2R 12187472 12187485 chr2R 12190095 12190101 7 2617 105.0 86.5 95.8 0.1 2629 chr2R 12187472 exon Cyp6g1 + chr2R 12188786 exon Cyp6g2 - chr2R 12190101 exon Cyp6g2 - chr2R_7_12185001 chr2R_12185001 RAL-727 801 chr2R 12187471 12187490 chr2R 12190102 12190124 28 2626 115.0 79.5 97.2 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_28_12185001 chr2R_12185001 RAL-727 802 chr2R 12217576 12217600 chr2R 12217657 12217681 9 79 2.5 5.5 4.0 1.8 105 chr2R 12217576 intergenic not near genes chr2R 12217628 intergenic not near genes chr2R 12217681 intergenic not near genes chr2R_9_12215001 chr2R_12215001 RAL-727 803 chr2R 12240762 12240780 chr2R 12240838 12240856 4 76 2.5 0.0 1.2 1.8 94 chr2R 12240762 3` UTR CG13170 + chr2R 12240809 3` UTR CG13170 + chr2R 12240856 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-727 804 chr2R 12320725 12320736 chr2R 12320985 12320996 7 259 2.5 4.0 3.2 1.7 271 chr2R 12320725 3` UTR CR44316 - chr2R 12320860 intron CR44316 - chr2R 12320996 intergenic CR44316 -,CG13163 + chr2R_7_12320001 chr2R_12320001 RAL-727 805 chr2R 12334886 12334905 chr2R 12334964 12334983 5 78 3.5 2.5 3.0 1.2 97 chr2R 12334886 intergenic CG8490 + chr2R 12334934 intergenic CG8490 + chr2R 12334983 intergenic CG8490 + chr2R_5_12330001 chr2R_12330001 RAL-727 806 chr2R 12363379 12363416 chr2R 12363811 12363848 27 432 7.5 4.5 6.0 3.9 469 chr2R 12363379 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_27_12360001 chr2R_12360001 RAL-727 807 chr2R 12476189 12476224 chr2R 12476275 12476310 21 85 32.5 38.0 35.2 0.6 121 chr2R 12476189 intron Dh44-R2 + chr2R 12476250 intron Dh44-R2 + chr2R 12476310 intron Dh44-R2 + chr2R_21_12475001 chr2R_12475001 RAL-727 808 chr2R 12510740 12510770 chr2R 12510821 12510851 7 81 4.0 3.5 3.8 1.5 111 chr2R 12510740 intergenic vis - chr2R 12510796 intergenic vis - chr2R 12510851 intergenic vis - chr2R_7_12510001 chr2R_12510001 RAL-727 809 chr2R 12548530 12548554 chr2R 12548607 12548630 8 76 0.0 9.0 4.5 1.5 100 chr2R 12548530 intron fra + chr2R 12548580 intron fra + chr2R 12548630 intron fra + chr2R_8_12545001 chr2R_12545001 RAL-727 810 chr2R 12628691 12628720 chr2R 12628787 12628813 16 94 2.0 6.0 4.0 3.2 122 chr2R 12628691 intergenic muskelin -,CG17760 + chr2R 12628752 3` UTR muskelin - chr2R 12628813 3` UTR muskelin - chr2R_16_12625001 chr2R_12625001 RAL-727 811 chr2R 12643789 12643818 chr2R 12643864 12643895 10 75 2.0 3.0 2.5 2.9 106 chr2R 12643789 intron CG8785 - chr2R 12643842 intron CG8785 - chr2R 12643895 exon CG8785 - chr2R_10_12640001 chr2R_12640001 RAL-727 812 chr2R 12707519 12707549 chr2R 12715885 12715915 roo 12 8366 0.0 4.0 2.0 4.0 8396 chr2R 12707519 intron CG42663 + chr2R 12711717 intron CG42663 + chr2R 12715915 intron CG42663 + chr2R_12_12710001 chr2R_12710001 RAL-727 813 chr2R 12774247 12774248 chr2R 12774332 12774333 4 85 10.5 0.0 5.2 0.6 86 chr2R 12774247 intergenic not near genes chr2R 12774290 intergenic not near genes chr2R 12774333 intergenic not near genes chr2R_4_12770001 chr2R_12770001 RAL-727 814 chr2R 12774253 12774259 chr2R 12774330 12774344 4 83 7.0 0.0 3.5 0.9 91 chr2R 12774253 intergenic not near genes chr2R 12774298 intergenic not near genes chr2R 12774344 intergenic not near genes chr2R_4_12770001 chr2R_12770001 RAL-727 815 chr2R 12808318 12808347 chr2R 12808413 12808437 21 92 5.0 5.0 5.0 3.5 119 chr2R 12808318 intergenic not near genes chr2R 12808378 intergenic not near genes chr2R 12808437 intergenic not near genes chr2R_21_12805001 chr2R_12805001 RAL-727 816 chr2R 12819457 12819473 chr2R 12824526 12824542 jockey 9 5068 2.5 11.5 7.0 1.1 5085 chr2R 12819457 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824542 intergenic not near genes chr2R_9_12820001 chr2R_12820001 RAL-727 817 chr2R 12836387 12836419 chr2R 12836474 12836506 9 87 1.0 6.5 3.8 1.9 119 chr2R 12836387 intergenic not near genes chr2R 12836446 intergenic not near genes chr2R 12836506 intergenic not near genes chr2R_9_12835001 chr2R_12835001 RAL-727 818 chr2R 13034675 13034692 chr2R 13034784 13034801 11 108 0.0 3.0 1.5 4.4 126 chr2R 13034675 intergenic not near genes chr2R 13034738 intergenic not near genes chr2R 13034801 intergenic not near genes chr2R_11_13030001 chr2R_13030001 RAL-727 819 chr2R 13043049 13043064 chr2R 13043146 13043161 8 97 7.5 0.5 4.0 1.6 112 chr2R 13043049 intergenic not near genes chr2R 13043105 intergenic not near genes chr2R 13043161 intergenic not near genes chr2R_8_13040001 chr2R_13040001 RAL-727 820 chr2R 13054138 13054167 chr2R 13054220 13054250 11 82 5.5 0.5 3.0 2.8 112 chr2R 13054138 intergenic not near genes chr2R 13054194 intergenic not near genes chr2R 13054250 intergenic not near genes chr2R_11_13050001 chr2R_13050001 RAL-727 821 chr2R 13136848 13136864 chr2R 13141646 13141662 Doc 4 4798 7.0 5.0 6.0 0.6 4814 chr2R 13136848 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-727 822 chr2R 13309660 13309678 chr2R 13309778 13309796 10 118 3.0 0.0 1.5 4.0 136 chr2R 13309660 intergenic not near genes chr2R 13309728 intergenic not near genes chr2R 13309796 intergenic not near genes chr2R_10_13305001 chr2R_13305001 RAL-727 823 chr2R 13403924 13403939 chr2R 13404009 13404024 5 85 2.5 9.0 5.8 0.7 100 chr2R 13403924 intergenic not near genes chr2R 13403974 intergenic not near genes chr2R 13404024 intergenic not near genes chr2R_5_13400001 chr2R_13400001 RAL-727 824 chr2R 13532517 13532544 chr2R 13532633 13532659 11 116 1.5 6.0 3.8 2.3 142 chr2R 13532517 intron Vmat - chr2R 13532588 intron Vmat - chr2R 13532659 intron Vmat - chr2R_11_13530001 chr2R_13530001 RAL-727 825 chr2R 13544582 13544593 chr2R 13544649 13544669 7 74 0.0 8.0 4.0 1.4 87 chr2R 13544582 intron CG6145 - chr2R 13544626 intron CG6145 - chr2R 13544669 intron CG6145 - chr2R_7_13540001 chr2R_13540001 RAL-727 826 chr2R 13547086 13547109 chr2R 13547276 13547304 9 194 5.5 3.5 4.5 1.6 218 chr2R 13547086 intron CG6145 - chr2R 13547195 intron CG6145 - chr2R 13547304 intron CG6145 - chr2R_9_13545001 chr2R_13545001 RAL-727 827 chr2R 13552241 13552263 chr2R 13552377 13552399 8 135 5.0 4.0 4.5 1.5 158 chr2R 13552241 intron CG33156 - chr2R 13552320 intron CG33156 - chr2R 13552399 intron CG33156 - chr2R_8_13550001 chr2R_13550001 RAL-727 828 chr2R 13554768 13554772 chr2R 13554853 13554857 4 85 0.0 8.0 4.0 0.8 89 chr2R 13554768 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554857 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-727 829 chr2R 13566265 13566291 chr2R 13566345 13566371 15 80 4.5 2.5 3.5 3.3 106 chr2R 13566265 intergenic not near genes chr2R 13566318 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_15_13565001 chr2R_13565001 RAL-727 830 chr2R 13580497 13580530 chr2R 13580847 13580880 jockey 12 346 1.5 9.5 5.5 1.8 383 chr2R 13580497 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580880 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_12_13580001 chr2R_13580001 RAL-727 831 chr2R 13584464 13584472 chr2R 13584553 13584561 4 89 5.5 8.0 6.8 0.5 97 chr2R 13584464 intron,intron CG6191 -,CG45088 - chr2R 13584512 intron,intron CG6191 -,CG45088 - chr2R 13584561 intron,intron CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-727 832 chr2R 13584478 13584496 chr2R 13584550 13584585 16 82 2.5 7.5 5.0 2.7 107 chr2R 13584478 intron,intron CG6191 -,CG45088 - chr2R 13584532 intron,intron CG6191 -,CG45088 - chr2R 13584585 intron,intron CG6191 -,CG45088 - chr2R_16_13580001 chr2R_13580001 RAL-727 833 chr2R 13728141 13728159 chr2R 13735798 13735816 opus 10 7657 5.0 5.5 5.2 1.6 7675 chr2R 13728141 intron fas + chr2R 13731978 intron fas + chr2R 13735816 intron fas + chr2R_10_13730001 chr2R_13730001 RAL-727 834 chr2R 13768981 13769009 chr2R 13769080 13769108 13 98 2.5 4.5 3.5 2.9 127 chr2R 13768981 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_13_13765001 chr2R_13765001 RAL-727 835 chr2R 13793150 13793161 chr2R 13793226 13793227 6 74 7.0 4.0 5.5 0.9 77 chr2R 13793150 intergenic not near genes chr2R 13793188 intergenic not near genes chr2R 13793227 intergenic not near genes chr2R_6_13790001 chr2R_13790001 RAL-727 836 chr2R 13861408 13861439 chr2R 13861498 13861529 13 90 4.0 3.5 3.8 2.7 121 chr2R 13861408 intron CG16935 - chr2R 13861468 intron CG16935 - chr2R 13861529 intron CG16935 - chr2R_13_13860001 chr2R_13860001 RAL-727 837 chr2R 13905603 13905630 chr2R 13907583 13907606 Rt1a 8 1980 3.0 2.5 2.8 2.1 2003 chr2R 13905603 intron shot - chr2R 13906604 intron shot - chr2R 13907606 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-727 838 chr2R 14018157 14018194 chr2R 14018241 14018278 14 83 4.0 4.5 4.2 2.7 121 chr2R 14018157 intron mam + chr2R 14018218 intron mam + chr2R 14018278 intron mam + chr2R_14_14015001 chr2R_14015001 RAL-727 839 chr2R 14037270 14037297 chr2R 14037353 14037380 4 83 0.0 4.5 2.2 1.2 110 chr2R 14037270 intron mam + chr2R 14037325 intron mam + chr2R 14037380 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-727 840 chr2R 14078074 14078102 chr2R 14078155 14078183 6 79 0.0 4.0 2.0 2.0 109 chr2R 14078074 intron Prosap - chr2R 14078128 intron Prosap - chr2R 14078183 intron Prosap - chr2R_6_14075001 chr2R_14075001 RAL-727 841 chr2R 14168369 14168397 chr2R 14168458 14168482 8 88 3.5 4.0 3.8 1.7 113 chr2R 14168369 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168426 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168482 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_8_14165001 chr2R_14165001 RAL-727 842 chr2R 14182881 14182898 chr2R 14182966 14182984 8 86 2.5 7.0 4.8 1.4 103 chr2R 14182881 intergenic cg + chr2R 14182932 intergenic cg + chr2R 14182984 intergenic cg + chr2R_8_14180001 chr2R_14180001 RAL-727 843 chr2R 14357555 14357577 chr2R 14357645 14357667 7 90 8.5 5.0 6.8 0.9 112 chr2R 14357555 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357667 intergenic Arc1 -,CG8617 - chr2R_7_14355001 chr2R_14355001 RAL-727 844 chr2R 14393872 14393898 chr2R 14393954 14393983 18 84 10.5 5.0 7.8 2.0 111 chr2R 14393872 intergenic not near genes chr2R 14393928 intergenic not near genes chr2R 14393983 intergenic not near genes chr2R_18_14390001 chr2R_14390001 RAL-727 845 chr2R 14394231 14394248 chr2R 14399020 14399037 Doc 8 4789 8.5 4.5 6.5 1.1 4806 chr2R 14394231 intergenic not near genes chr2R 14396634 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_8_14395001 chr2R_14395001 RAL-727 846 chr2R 14467293 14467299 chr2R 14476445 14476451 roo 5 9152 8.0 12.0 10.0 0.5 9158 chr2R 14467293 intergenic not near genes chr2R 14471872 intergenic not near genes chr2R 14476451 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-727 847 chr2R 14467302 14467326 chr2R 14476443 14476478 roo 17 9144 4.0 12.0 8.0 1.9 9176 chr2R 14467302 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476478 5` UTR CR44462 + chr2R_17_14470001 chr2R_14470001 RAL-727 848 chr2R 14497387 14497422 chr2R 14498550 14498588 1360 5 1165 0.0 3.5 1.8 1.8 1201 chr2R 14497387 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498588 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-727 849 chr2R 14514487 14514499 chr2R 14514580 14514592 4 97 7.5 4.0 5.8 0.6 105 chr2R 14514487 intron,intron Cpr51A -,CG30197 + chr2R 14514540 intron,intron Cpr51A -,CG30197 + chr2R 14514592 intron,intron Cpr51A -,CG30197 + chr2R_4_14510001 chr2R_14510001 RAL-727 850 chr2R 14533778 14533786 chr2R 14533860 14533862 4 78 1.5 3.5 2.5 1.1 84 chr2R 14533778 intron ttv + chr2R 14533820 intron ttv + chr2R 14533862 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-727 851 chr2R 14556161 14556194 chr2R 14556240 14556273 27 78 7.0 8.0 7.5 3.2 112 chr2R 14556161 intron ttv + chr2R 14556217 intron ttv + chr2R 14556273 intron ttv + chr2R_27_14555001 chr2R_14555001 RAL-727 852 chr2R 14565556 14565589 chr2R 14565633 14565666 10 77 6.0 4.0 5.0 1.7 110 chr2R 14565556 intron ttv + chr2R 14565611 intron ttv + chr2R 14565666 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-727 853 chr2R 14566453 14566478 chr2R 14566534 14566565 10 86 0.5 2.5 1.5 4.0 112 chr2R 14566453 intron ttv + chr2R 14566509 intron ttv + chr2R 14566565 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-727 854 chr2R 14659328 14659333 chr2R 14659406 14659406 4 76 17.5 5.0 11.2 0.3 78 chr2R 14659328 intergenic not near genes chr2R 14659367 intergenic not near genes chr2R 14659406 intergenic not near genes chr2R_4_14655001 chr2R_14655001 RAL-727 855 chr2R 14733859 14733865 chr2R 14733921 14733956 6 82 2.5 4.0 3.2 1.4 97 chr2R 14733859 intergenic not near genes chr2R 14733908 intergenic not near genes chr2R 14733956 intergenic not near genes chr2R_6_14730001 chr2R_14730001 RAL-727 856 chr2R 14786048 14786059 chr2R 14786132 14786152 4 91 0.0 5.0 2.5 1.1 104 chr2R 14786048 intron kn - chr2R 14786100 intron kn - chr2R 14786152 intron kn - chr2R_4_14785001 chr2R_14785001 RAL-727 857 chr2R 14796546 14796553 chr2R 14796627 14796634 4 80 0.0 5.0 2.5 1.1 88 chr2R 14796546 intron kn - chr2R 14796590 intron kn - chr2R 14796634 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-727 858 chr2R 14799865 14799895 chr2R 14799941 14799971 17 76 2.5 10.5 6.5 2.3 106 chr2R 14799865 intron kn - chr2R 14799918 intron kn - chr2R 14799971 intron kn - chr2R_17_14795001 chr2R_14795001 RAL-727 859 chr2R 14850056 14850089 chr2R 14850162 14850194 19 101 43.5 43.5 43.5 0.4 138 chr2R 14850056 exon SMC2 - chr2R 14850125 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_19_14850001 chr2R_14850001 RAL-727 860 chr2R 14855036 14855063 chr2R 14855122 14855133 13 85 1.5 2.5 2.0 4.3 97 chr2R 14855036 5` UTR Ciao1 - chr2R 14855084 intergenic Ciao1 -,HPS1 + chr2R 14855133 intergenic Ciao1 -,HPS1 + chr2R_13_14855001 chr2R_14855001 RAL-727 861 chr2R 14889206 14889237 chr2R 14897814 14897845 Max-element 22 8607 10.5 0.0 5.2 3.5 8639 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_22_14890001 chr2R_14890001 RAL-727 862 chr2R 14911700 14911728 chr2R 14911823 14911851 14 123 5.5 7.0 6.2 1.9 151 chr2R 14911700 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_14_14910001 chr2R_14910001 RAL-727 863 chr2R 14913667 14913689 chr2R 14913777 14913799 5 110 1.0 3.5 2.2 1.6 132 chr2R 14913667 intron CG10249 - chr2R 14913733 intron CG10249 - chr2R 14913799 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-727 864 chr2R 14914328 14914340 chr2R 14914442 14914457 5 116 3.0 0.0 1.5 2.0 129 chr2R 14914328 intron CG10249 - chr2R 14914392 intron CG10249 - chr2R 14914457 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-727 865 chr2R 14922141 14922174 chr2R 14922217 14922250 21 74 7.5 4.0 5.8 3.1 109 chr2R 14922141 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_21_14920001 chr2R_14920001 RAL-727 866 chr2R 15004726 15004763 chr2R 15005055 15005092 jockey 17 327 3.5 0.5 2.0 5.7 366 chr2R 15004726 intergenic not near genes chr2R 15004909 intergenic not near genes chr2R 15005092 intergenic not near genes chr2R_17_15000001 chr2R_15000001 RAL-727 867 chr2R 15015455 15015489 chr2R 15022879 15022913 mdg1 19 7423 3.5 5.5 4.5 3.5 7458 chr2R 15015455 intron hbs + chr2R 15019184 intron hbs + chr2R 15022913 intron hbs + chr2R_19_15015001 chr2R_15015001 RAL-727 868 chr2R 15084995 15085007 chr2R 15092044 15092056 297 7 7048 4.0 8.0 6.0 1.0 7061 chr2R 15084995 intergenic not near genes chr2R 15088526 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-727 869 chr2R 15101282 15101306 chr2R 15101364 15101388 8 82 5.5 0.5 3.0 2.0 106 chr2R 15101282 intergenic not near genes chr2R 15101335 intergenic not near genes chr2R 15101388 intergenic not near genes chr2R_8_15100001 chr2R_15100001 RAL-727 870 chr2R 15109338 15109354 chr2R 15109430 15109446 9 88 8.5 9.5 9.0 0.9 108 chr2R 15109338 intergenic not near genes chr2R 15109392 intergenic not near genes chr2R 15109446 intergenic not near genes chr2R_9_15105001 chr2R_15105001 RAL-727 871 chr2R 15109357 15109368 chr2R 15109427 15109436 7 79 4.0 7.5 5.8 1.0 79 chr2R 15109357 intergenic not near genes chr2R 15109396 intergenic not near genes chr2R 15109436 intergenic not near genes chr2R_7_15105001 chr2R_15105001 RAL-727 872 chr2R 15119317 15119346 chr2R 15127798 15127827 Tirant 11 8477 6.0 4.5 5.2 1.8 8510 chr2R 15119317 intron chn + chr2R 15123572 intron chn + chr2R 15127827 intron chn + chr2R_11_15120001 chr2R_15120001 RAL-727 873 chr2R 15137971 15137982 chr2R 15138050 15138062 5 80 8.0 0.5 4.2 1.0 91 chr2R 15137971 intron chn + chr2R 15138016 intron chn + chr2R 15138062 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-727 874 chr2R 15137985 15138004 chr2R 15138048 15138086 6 78 2.5 0.5 1.5 2.4 101 chr2R 15137985 intron chn + chr2R 15138036 intron chn + chr2R 15138086 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-727 875 chr2R 15259060 15259094 chr2R 15259144 15259178 10 84 4.0 4.5 4.2 1.9 118 chr2R 15259060 intron ItgalphaPS4 + chr2R 15259119 intron ItgalphaPS4 + chr2R 15259178 intron ItgalphaPS4 + chr2R_10_15255001 chr2R_15255001 RAL-727 876 chr2R 15296162 15296167 chr2R 15296245 15296250 6 82 6.5 6.5 6.5 0.8 88 chr2R 15296162 intron Trpm - chr2R 15296206 intron Trpm - chr2R 15296250 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-727 877 chr2R 15296168 15296173 chr2R 15296242 15296256 6 80 4.5 6.0 5.2 1.0 88 chr2R 15296168 intron Trpm - chr2R 15296212 intron Trpm - chr2R 15296256 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-727 878 chr2R 15645689 15645704 chr2R 15645779 15645800 4 93 3.0 0.5 1.8 1.4 111 chr2R 15645689 intron CG42524 + chr2R 15645744 intron CG42524 + chr2R 15645800 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-727 879 chr2R 15720791 15720798 chr2R 15720886 15720894 4 96 2.5 7.5 5.0 0.7 103 chr2R 15720791 intergenic not near genes chr2R 15720842 intergenic not near genes chr2R 15720894 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-727 880 chr2R 15755220 15755253 chr2R 15755303 15755325 5 77 4.0 3.0 3.5 1.1 105 chr2R 15755220 intron CG30089 + chr2R 15755272 intron CG30089 + chr2R 15755325 intron CG30089 + chr2R_5_15755001 chr2R_15755001 RAL-727 881 chr2R 16245635 16245662 chr2R 16245720 16245750 15 88 5.0 3.5 4.2 2.9 115 chr2R 16245635 intron CngA - chr2R 16245692 intron CngA - chr2R 16245750 intron CngA - chr2R_15_16245001 chr2R_16245001 RAL-727 882 chr2R 16357858 16357867 chr2R 16357928 16357945 4 75 7.5 2.0 4.8 0.7 87 chr2R 16357858 5` UTR CR43416 + chr2R 16357902 5` UTR CR43416 + chr2R 16357945 5` UTR CR43416 + chr2R_4_16355001 chr2R_16355001 RAL-727 883 chr2R 16562086 16562116 chr2R 16562400 16562434 12 317 4.0 1.5 2.8 3.2 348 chr2R 16562086 intron DAT - chr2R 16562260 intron DAT - chr2R 16562434 intron DAT - chr2R_12_16560001 chr2R_16560001 RAL-727 884 chr2R 16571871 16571906 chr2R 16571966 16572001 9 95 6.5 4.5 5.5 1.4 130 chr2R 16571871 intergenic CG4927 + chr2R 16571936 intergenic CG4927 + chr2R 16572001 intergenic CG4927 + chr2R_9_16570001 chr2R_16570001 RAL-727 885 chr2R 16594717 16594755 chr2R 16594795 16594831 20 77 2.0 2.0 2.0 6.7 114 chr2R 16594717 intergenic CG8306 -,CG8303 - chr2R 16594774 intergenic CG8306 -,CG8303 - chr2R 16594831 intergenic CG8306 -,CG8303 - chr2R_20_16590001 chr2R_16590001 RAL-727 886 chr2R 16617062 16617090 chr2R 16617141 16617169 14 79 4.0 5.5 4.8 2.4 107 chr2R 16617062 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_14_16615001 chr2R_16615001 RAL-727 887 chr2R 16661087 16661106 chr2R 16661240 16661260 13 153 4.0 13.5 8.8 1.3 173 chr2R 16661087 intron Picot - chr2R 16661174 intron Picot - chr2R 16661260 intron Picot - chr2R_13_16660001 chr2R_16660001 RAL-727 888 chr2R 16721065 16721087 chr2R 16721142 16721165 6 78 5.5 5.5 5.5 0.9 100 chr2R 16721065 intron CG30463 - chr2R 16721115 intron CG30463 - chr2R 16721165 intron CG30463 - chr2R_6_16720001 chr2R_16720001 RAL-727 889 chr2R 16723922 16723951 chr2R 16724002 16724030 14 79 6.5 2.0 4.2 2.7 108 chr2R 16723922 intron CG30463 - chr2R 16723976 intron CG30463 - chr2R 16724030 intron CG30463 - chr2R_14_16720001 chr2R_16720001 RAL-727 890 chr2R 16732865 16732882 chr2R 16733035 16733052 12 169 7.5 2.0 4.8 2.1 187 chr2R 16732865 5` UTR CG30463 - chr2R 16732958 intergenic CG30463 - chr2R 16733052 intergenic CG30463 - chr2R_12_16730001 chr2R_16730001 RAL-727 891 chr2R 16775657 16775673 chr2R 16775924 16775940 7 266 4.5 9.5 7.0 0.9 283 chr2R 16775657 3` UTR Arp53D + chr2R 16775798 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_7_16775001 chr2R_16775001 RAL-727 892 chr2R 16893775 16893803 chr2R 16893858 16893876 8 82 2.5 4.0 3.2 1.9 101 chr2R 16893775 intron CG8910 - chr2R 16893826 intron CG8910 - chr2R 16893876 intron CG8910 - chr2R_8_16890001 chr2R_16890001 RAL-727 893 chr2R 16975203 16975217 chr2R 16975280 16975294 6 77 5.0 5.0 5.0 1.0 91 chr2R 16975203 intron Cbp53E + chr2R 16975248 intron Cbp53E + chr2R 16975294 intron Cbp53E + chr2R_6_16975001 chr2R_16975001 RAL-727 894 chr2R 17048620 17048652 chr2R 17048698 17048731 6 79 2.5 2.0 2.2 1.9 111 chr2R 17048620 3` UTR CG9642 + chr2R 17048676 3` UTR CG9642 + chr2R 17048731 3` UTR CG9642 + chr2R_6_17045001 chr2R_17045001 RAL-727 895 chr2R 17147243 17147263 chr2R 17152274 17152294 jockey 9 5031 8.5 7.0 7.8 1.0 5051 chr2R 17147243 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152294 intergenic not near genes chr2R_9_17145001 chr2R_17145001 RAL-727 896 chr2R 17161354 17161363 chr2R 17161561 17161564 10 206 2.5 0.0 1.2 4.5 210 chr2R 17161354 intergenic not near genes chr2R 17161459 intergenic not near genes chr2R 17161564 intergenic not near genes chr2R_10_17160001 chr2R_17160001 RAL-727 897 chr2R 17176352 17176388 chr2R 17182542 17182578 diver 15 6189 4.5 3.5 4.0 3.0 6226 chr2R 17176352 intergenic not near genes chr2R 17179465 intergenic not near genes chr2R 17182578 intergenic not near genes chr2R_15_17175001 chr2R_17175001 RAL-727 898 chr2R 17183449 17183458 chr2R 17183527 17183536 9 78 5.0 0.0 2.5 2.6 87 chr2R 17183449 intergenic not near genes chr2R 17183492 intergenic not near genes chr2R 17183536 intergenic not near genes chr2R_9_17180001 chr2R_17180001 RAL-727 899 chr2R 17236507 17236539 chr2R 17241711 17241743 copia 8 5204 2.5 4.0 3.2 1.9 5236 chr2R 17236507 intron mbl + chr2R 17239125 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-727 900 chr2R 17389270 17389299 chr2R 17389360 17389390 8 88 2.0 4.0 3.0 2.0 120 chr2R 17389270 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389390 intergenic CR44344 - chr2R_8_17385001 chr2R_17385001 RAL-727 901 chr2R 17459005 17459039 chr2R 17459090 17459124 17 85 5.5 4.0 4.8 2.9 119 chr2R 17459005 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_17_17455001 chr2R_17455001 RAL-727 902 chr2R 17461287 17461318 chr2R 17461445 17461476 14 156 4.0 10.0 7.0 1.8 189 chr2R 17461287 intron CG14478 + chr2R 17461382 intron CG14478 + chr2R 17461476 intron CG14478 + chr2R_14_17460001 chr2R_17460001 RAL-727 903 chr2R 17478831 17478865 chr2R 17478909 17478943 15 74 4.0 3.5 3.8 3.1 112 chr2R 17478831 3` UTR,intron CG43110 -,veil + chr2R 17478887 3` UTR,intron CG43110 -,veil + chr2R 17478943 3` UTR,intron CG43110 -,veil + chr2R_15_17475001 chr2R_17475001 RAL-727 904 chr2R 17782361 17782389 chr2R 17783564 17783592 pogo 8 1203 3.5 4.0 3.8 1.7 1231 chr2R 17782361 intergenic CG33981 -,fab1 - chr2R 17782976 intergenic not near genes chr2R 17783592 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-727 905 chr2R 17784024 17784057 chr2R 17784265 17784298 pogo 18 240 4.5 3.0 3.8 3.8 274 chr2R 17784024 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_18_17780001 chr2R_17780001 RAL-727 906 chr2R 17843228 17843239 chr2R 17843316 17843327 5 88 0.0 4.0 2.0 1.7 99 chr2R 17843228 intergenic olf186-F + chr2R 17843278 intergenic olf186-F + chr2R 17843327 intergenic olf186-F + chr2R_5_17840001 chr2R_17840001 RAL-727 907 chr2R 17872915 17872939 chr2R 17873273 17873296 14 358 9.5 12.5 11.0 1.2 381 chr2R 17872915 intergenic not near genes chr2R 17873106 intergenic not near genes chr2R 17873296 intergenic not near genes chr2R_14_17870001 chr2R_17870001 RAL-727 908 chr2R 17883552 17883586 chr2R 17883630 17883663 17 78 2.0 6.0 4.0 3.4 111 chr2R 17883552 intron Elk + chr2R 17883608 intron Elk + chr2R 17883663 intron Elk + chr2R_17_17880001 chr2R_17880001 RAL-727 909 chr2R 17885108 17885136 chr2R 17885203 17885231 9 95 2.0 4.5 3.2 2.1 123 chr2R 17885108 intron Elk + chr2R 17885170 intron Elk + chr2R 17885231 intron Elk + chr2R_9_17885001 chr2R_17885001 RAL-727 910 chr2R 17918172 17918192 chr2R 17918245 17918269 7 74 6.5 3.0 4.8 1.2 97 chr2R 17918172 intron Elk + chr2R 17918220 intron Elk + chr2R 17918269 intron Elk + chr2R_7_17915001 chr2R_17915001 RAL-727 911 chr2R 17926890 17926927 chr2R 17926974 17927011 17 84 2.0 4.5 3.2 4.0 121 chr2R 17926890 intergenic Elk + chr2R 17926950 intergenic Elk + chr2R 17927011 intergenic Elk + chr2R_17_17925001 chr2R_17925001 RAL-727 912 chr2R 17944113 17944147 chr2R 17944216 17944250 34 102 6.5 4.5 5.5 5.2 137 chr2R 17944113 intergenic not near genes chr2R 17944182 intergenic not near genes chr2R 17944250 intergenic not near genes chr2R_34_17940001 chr2R_17940001 RAL-727 913 chr2R 17982924 17982948 chr2R 17983009 17983022 16 84 5.5 3.5 4.5 2.9 98 chr2R 17982924 intron dpr13 - chr2R 17982973 intron dpr13 - chr2R 17983022 intron dpr13 - chr2R_16_17980001 chr2R_17980001 RAL-727 914 chr2R 17991312 17991345 chr2R 17991397 17991431 19 82 8.0 5.5 6.8 2.4 119 chr2R 17991312 intron dpr13 - chr2R 17991372 intron dpr13 - chr2R 17991431 intron dpr13 - chr2R_19_17990001 chr2R_17990001 RAL-727 915 chr2R 18045669 18045703 chr2R 18046021 18046055 jockey 4 352 0.5 3.5 2.0 1.3 386 chr2R 18045669 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046055 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 RAL-727 916 chr2R 18089221 18089229 chr2R 18089331 18089339 4 110 0.0 8.5 4.2 0.8 118 chr2R 18089221 intron CG34386 + chr2R 18089280 intron CG34386 + chr2R 18089339 intron CG34386 + chr2R_4_18085001 chr2R_18085001 RAL-727 917 chr2R 18111686 18111714 chr2R 18115554 18115582 F-element 11 3868 6.0 5.5 5.8 1.6 3896 chr2R 18111686 intergenic not near genes chr2R 18113634 intergenic not near genes chr2R 18115582 intergenic not near genes chr2R_11_18110001 chr2R_18110001 RAL-727 918 chr2R 18124338 18124371 chr2R 18124415 18124447 20 76 6.0 6.0 6.0 2.9 109 chr2R 18124338 intron stau - chr2R 18124392 intron stau - chr2R 18124447 intron stau - chr2R_20_18120001 chr2R_18120001 RAL-727 919 chr2R 18173191 18173215 chr2R 18173282 18173307 8 86 10.5 3.5 7.0 1.0 116 chr2R 18173191 intergenic CG10916 + chr2R 18173249 intergenic CG10916 + chr2R 18173307 intergenic CG10916 + chr2R_8_18170001 chr2R_18170001 RAL-727 920 chr2R 18289440 18289455 chr2R 18289542 18289557 6 102 5.0 3.0 4.0 1.2 117 chr2R 18289440 intron,intron sbb -,CG14502 + chr2R 18289498 intron,intron sbb -,CG14502 + chr2R 18289557 exon,intron sbb -,CG14502 + chr2R_6_18285001 chr2R_18285001 RAL-727 921 chr2R 18308283 18308314 chr2R 18308389 18308420 13 106 7.5 3.5 5.5 2.0 137 chr2R 18308283 intron sbb - chr2R 18308352 intron sbb - chr2R 18308420 intron sbb - chr2R_13_18305001 chr2R_18305001 RAL-727 922 chr2R 18358387 18358422 chr2R 18372599 18372634 roo 24 14211 9.0 6.5 7.8 2.7 14247 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_24_18365001 chr2R_18365001 RAL-727 923 chr2R 18376724 18376763 chr2R 18376814 18376853 22 88 4.0 5.5 4.8 3.8 129 chr2R 18376724 intergenic not near genes chr2R 18376788 intergenic not near genes chr2R 18376853 intergenic not near genes chr2R_22_18375001 chr2R_18375001 RAL-727 924 chr2R 18390888 18390907 chr2R 18390975 18390994 5 87 0.0 5.5 2.8 1.3 106 chr2R 18390888 intergenic CG15068 - chr2R 18390941 intergenic CG15068 - chr2R 18390994 intergenic CG15068 - chr2R_5_18390001 chr2R_18390001 RAL-727 925 chr2R 18408282 18408312 chr2R 18408403 18408433 23 118 4.5 3.5 4.0 4.6 151 chr2R 18408282 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408433 exon GstE8 + chr2R_23_18405001 chr2R_18405001 RAL-727 926 chr2R 18477748 18477760 chr2R 18477823 18477843 4 81 0.5 4.0 2.2 1.2 95 chr2R 18477748 intron CG30116 - chr2R 18477796 intron CG30116 - chr2R 18477843 intron CG30116 - chr2R_4_18475001 chr2R_18475001 RAL-727 927 chr2R 18486845 18486880 chr2R 18487107 18487141 13 260 3.5 2.5 3.0 3.2 296 chr2R 18486845 intron CG30116 - chr2R 18486993 intron CG30116 - chr2R 18487141 intron CG30116 - chr2R_13_18485001 chr2R_18485001 RAL-727 928 chr2R 18575802 18575828 chr2R 18581986 18582015 3S18 11 6185 5.5 7.0 6.2 1.5 6213 chr2R 18575802 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_11_18575001 chr2R_18575001 RAL-727 929 chr2R 18590867 18590901 chr2R 18600019 18600053 roo 7 9152 1.0 4.5 2.8 1.8 9186 chr2R 18590867 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-727 930 chr2R 18646411 18646430 chr2R 18646555 18646575 11 145 4.5 4.0 4.2 2.1 164 chr2R 18646411 intron SP2637 - chr2R 18646493 intron SP2637 - chr2R 18646575 intron SP2637 - chr2R_11_18645001 chr2R_18645001 RAL-727 931 chr2R 18732349 18732380 chr2R 18732483 18732514 9 134 3.5 3.5 3.5 2.0 165 chr2R 18732349 intron Hs3st-A + chr2R 18732432 intron Hs3st-A + chr2R 18732514 intron Hs3st-A + chr2R_9_18730001 chr2R_18730001 RAL-727 932 chr2R 18738213 18738232 chr2R 18738289 18738308 9 76 6.0 5.0 5.5 1.4 95 chr2R 18738213 intron Hs3st-A + chr2R 18738260 intron Hs3st-A + chr2R 18738308 intron Hs3st-A + chr2R_9_18735001 chr2R_18735001 RAL-727 933 chr2R 18785913 18785949 chr2R 18785992 18786028 13 74 3.5 2.5 3.0 3.2 115 chr2R 18785913 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786028 intron CG15080 + chr2R_13_18785001 chr2R_18785001 RAL-727 934 chr2R 18817451 18817477 chr2R 18817562 18817570 6 109 3.5 5.0 4.2 1.2 119 chr2R 18817451 intergenic not near genes chr2R 18817510 intergenic not near genes chr2R 18817570 intergenic not near genes chr2R_6_18815001 chr2R_18815001 RAL-727 935 chr2R 18949444 18949479 chr2R 18949643 18949678 16 196 5.0 5.5 5.2 2.6 234 chr2R 18949444 intron sano + chr2R 18949561 intron sano + chr2R 18949678 intron sano + chr2R_16_18945001 chr2R_18945001 RAL-727 936 chr2R 18953165 18953192 chr2R 18953252 18953279 11 87 4.5 8.5 6.5 1.5 114 chr2R 18953165 intron sano + chr2R 18953222 intron sano + chr2R 18953279 intron sano + chr2R_11_18950001 chr2R_18950001 RAL-727 937 chr2R 19065810 19065828 chr2R 19065892 19065911 4 82 6.0 5.0 5.5 0.6 101 chr2R 19065810 intergenic not near genes chr2R 19065860 intergenic not near genes chr2R 19065911 intergenic not near genes chr2R_4_19065001 chr2R_19065001 RAL-727 938 chr2R 19181333 19181357 chr2R 19181421 19181445 18 87 0.0 10.5 5.2 2.9 112 chr2R 19181333 intron hppy + chr2R 19181389 intron hppy + chr2R 19181445 intron hppy + chr2R_18_19180001 chr2R_19180001 RAL-727 939 chr2R 19231231 19231259 chr2R 19231468 19231492 11 234 8.0 11.0 9.5 1.0 261 chr2R 19231231 intron cora + chr2R 19231362 intron cora + chr2R 19231492 intron cora + chr2R_11_19230001 chr2R_19230001 RAL-727 940 chr2R 19234836 19234863 chr2R 19234918 19234945 11 82 1.0 5.0 3.0 2.8 109 chr2R 19234836 intron cora + chr2R 19234890 intron cora + chr2R 19234945 intron cora + chr2R_11_19230001 chr2R_19230001 RAL-727 941 chr2R 19274939 19274969 chr2R 19275009 19275045 11 73 5.0 5.5 5.2 1.8 106 chr2R 19274939 intron rib + chr2R 19274992 intron rib + chr2R 19275045 intron rib + chr2R_11_19270001 chr2R_19270001 RAL-727 942 chr2R 19331502 19331530 chr2R 19331703 19331731 13 200 3.5 5.0 4.2 2.5 229 chr2R 19331502 intron,intron Rgk1 -,CG34045 + chr2R 19331616 intron,intron Rgk1 -,CG34045 + chr2R 19331731 intron,intron Rgk1 -,CG34045 + chr2R_13_19330001 chr2R_19330001 RAL-727 943 chr2R 19373682 19373712 chr2R 19373863 19373893 17 178 12.5 7.0 9.8 1.6 211 chr2R 19373682 5` UTR CG9416 - chr2R 19373788 intergenic CG9416 - chr2R 19373893 intergenic CG9416 - chr2R_17_19370001 chr2R_19370001 RAL-727 944 chr2R 19536469 19536500 chr2R 19536551 19536582 16 81 2.5 2.5 2.5 4.6 113 chr2R 19536469 intron sm - chr2R 19536526 intron sm - chr2R 19536582 intron sm - chr2R_16_19535001 chr2R_19535001 RAL-727 945 chr2R 19559173 19559208 chr2R 19559298 19559332 21 123 10.0 5.5 7.8 2.4 159 chr2R 19559173 intron sm - chr2R 19559252 intron sm - chr2R 19559332 intron sm - chr2R_21_19555001 chr2R_19555001 RAL-727 946 chr2R 19588754 19588766 chr2R 19588832 19588844 6 78 6.0 7.5 6.8 0.8 90 chr2R 19588754 intron sm - chr2R 19588799 intron sm - chr2R 19588844 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-727 947 chr2R 19588770 19588781 chr2R 19588829 19588859 5 74 3.0 6.5 4.8 0.9 89 chr2R 19588770 intron sm - chr2R 19588814 intron sm - chr2R 19588859 intron sm - chr2R_5_19585001 chr2R_19585001 RAL-727 948 chr2R 19776597 19776628 chr2R 19779916 19779950 jockey 18 3321 3.5 7.5 5.5 2.8 3353 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_18_19775001 chr2R_19775001 RAL-727 949 chr2R 19807672 19807703 chr2R 19807754 19807785 14 82 4.5 4.0 4.2 2.7 113 chr2R 19807672 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807785 intergenic not near genes chr2R_14_19805001 chr2R_19805001 RAL-727 950 chr2R 19845083 19845100 chr2R 19845164 19845181 14 80 13.5 5.5 9.5 1.3 98 chr2R 19845083 intergenic not near genes chr2R 19845132 intergenic not near genes chr2R 19845181 intergenic not near genes chr2R_14_19845001 chr2R_19845001 RAL-727 951 chr2R 19845101 19845114 chr2R 19845162 19845193 9 74 9.5 5.5 7.5 1.1 92 chr2R 19845101 intergenic not near genes chr2R 19845147 intergenic not near genes chr2R 19845193 intergenic not near genes chr2R_9_19845001 chr2R_19845001 RAL-727 952 chr2R 19914848 19914878 chr2R 19922255 19922290 mdg1 10 7409 6.0 2.5 4.2 1.9 7442 chr2R 19914848 intergenic not near genes chr2R 19918569 intergenic not near genes chr2R 19922290 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-727 953 chr2R 20025990 20025999 chr2R 20026080 20026092 7 93 4.5 6.0 5.2 1.1 102 chr2R 20025990 intergenic not near genes chr2R 20026041 intergenic not near genes chr2R 20026092 intergenic not near genes chr2R_7_20025001 chr2R_20025001 RAL-727 954 chr2R 20031907 20031930 chr2R 20032002 20032026 19 95 5.0 4.5 4.8 3.3 119 chr2R 20031907 intergenic not near genes chr2R 20031966 intergenic not near genes chr2R 20032026 intergenic not near genes chr2R_19_20030001 chr2R_20030001 RAL-727 955 chr2R 20080609 20080624 chr2R 20080686 20080701 7 77 0.0 7.0 3.5 1.6 92 chr2R 20080609 intergenic not near genes chr2R 20080655 intergenic not near genes chr2R 20080701 intergenic not near genes chr2R_7_20080001 chr2R_20080001 RAL-727 956 chr2R 20106136 20106156 chr2R 20106236 20106256 10 98 8.5 7.0 7.8 1.1 120 chr2R 20106136 intergenic not near genes chr2R 20106196 intergenic not near genes chr2R 20106256 intergenic not near genes chr2R_10_20105001 chr2R_20105001 RAL-727 957 chr2R 20106158 20106163 chr2R 20106232 20106262 4 91 7.0 5.0 6.0 0.6 104 chr2R 20106158 intergenic not near genes chr2R 20106210 intergenic not near genes chr2R 20106262 intergenic not near genes chr2R_4_20105001 chr2R_20105001 RAL-727 958 chr2R 20118879 20118894 chr2R 20118964 20118982 7 87 4.0 4.0 4.0 1.4 103 chr2R 20118879 intergenic not near genes chr2R 20118930 intergenic not near genes chr2R 20118982 intergenic not near genes chr2R_7_20115001 chr2R_20115001 RAL-727 959 chr2R 20125735 20125749 chr2R 20125811 20125825 6 76 3.5 9.0 6.2 0.8 90 chr2R 20125735 intergenic not near genes chr2R 20125780 intergenic not near genes chr2R 20125825 intergenic not near genes chr2R_6_20125001 chr2R_20125001 RAL-727 960 chr2R 20169023 20169060 chr2R 20169113 20169143 6 84 3.0 8.5 5.8 0.9 120 chr2R 20169023 intergenic not near genes chr2R 20169083 intergenic not near genes chr2R 20169143 intergenic not near genes chr2R_6_20165001 chr2R_20165001 RAL-727 961 chr2R 20218766 20218792 chr2R 20218849 20218875 10 83 3.0 4.0 3.5 2.2 109 chr2R 20218766 intergenic not near genes chr2R 20218820 intergenic not near genes chr2R 20218875 intergenic not near genes chr2R_10_20215001 chr2R_20215001 RAL-727 962 chr2R 20223954 20223976 chr2R 20224039 20224061 18 85 9.0 1.0 5.0 3.0 107 chr2R 20223954 intergenic not near genes chr2R 20224008 intergenic not near genes chr2R 20224061 intergenic not near genes chr2R_18_20220001 chr2R_20220001 RAL-727 963 chr2R 20265461 20265494 chr2R 20276771 20276803 14 11310 33.0 28.5 30.8 0.4 11342 chr2R 20265461 exon CG8908 + chr2R 20271132 intergenic CG8908 + chr2R 20276803 exon CG9143 - chr2R_14_20270001 chr2R_20270001 RAL-727 964 chr2R 20408620 20408653 chr2R 20408697 20408725 11 73 3.0 6.5 4.8 1.9 105 chr2R 20408620 intergenic not near genes chr2R 20408672 intergenic not near genes chr2R 20408725 intergenic not near genes chr2R_11_20405001 chr2R_20405001 RAL-727 965 chr2R 20439063 20439087 chr2R 20439146 20439170 6 82 1.5 1.5 1.5 2.4 107 chr2R 20439063 intron CG12484 + chr2R 20439116 intron CG12484 + chr2R 20439170 intron CG12484 + chr2R_6_20435001 chr2R_20435001 RAL-727 966 chr2R 20479638 20479660 chr2R 20479837 20479858 4 198 2.0 7.5 4.8 0.7 220 chr2R 20479638 intergenic not near genes chr2R 20479748 intergenic not near genes chr2R 20479858 intergenic not near genes chr2R_4_20475001 chr2R_20475001 RAL-727 967 chr2R 20523043 20523066 chr2R 20523154 20523177 6 104 3.5 4.0 3.8 1.2 134 chr2R 20523043 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523177 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-727 968 chr2R 20661420 20661450 chr2R 20662213 20662243 10 788 4.5 3.5 4.0 2.0 823 chr2R 20661420 intergenic CG13437 +,Lrt + chr2R 20661832 exon CG13437 + chr2R 20662243 exon CG13437 + chr2R_10_20660001 chr2R_20660001 RAL-727 969 chr2R 20700045 20700080 chr2R 20700129 20700162 10 82 2.0 3.0 2.5 2.9 117 chr2R 20700045 intron dpr + chr2R 20700104 intron dpr + chr2R 20700162 intron dpr + chr2R_10_20700001 chr2R_20700001 RAL-727 970 chr2R 20739444 20739477 chr2R 20744212 20744237 F-element 10 4766 4.5 2.0 3.2 2.4 4793 chr2R 20739444 intron dpr + chr2R 20741840 intron dpr + chr2R 20744237 intron dpr + chr2R_10_20740001 chr2R_20740001 RAL-727 971 chr2R 20783313 20783333 chr2R 20788085 20788105 F-element 4 4772 3.0 7.5 5.2 0.6 4792 chr2R 20783313 intergenic not near genes chr2R 20785709 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-727 972 chr2R 20848929 20848962 chr2R 20849014 20849048 16 86 1.0 4.0 2.5 4.6 119 chr2R 20848929 exon CG17999 - chr2R 20848988 intron CG17999 - chr2R 20849048 intron CG17999 - chr2R_16_20845001 chr2R_20845001 RAL-727 973 chr2R 20938907 20938929 chr2R 20938992 20939015 8 84 0.0 2.0 1.0 4.0 108 chr2R 20938907 intergenic not near genes chr2R 20938961 intergenic not near genes chr2R 20939015 intergenic not near genes chr2R_8_20935001 chr2R_20935001 RAL-727 974 chr2R 20967026 20967057 chr2R 20967103 20967113 8 74 3.5 0.0 1.8 2.9 87 chr2R 20967026 intergenic not near genes chr2R 20967070 intergenic not near genes chr2R 20967113 intergenic not near genes chr2R_8_20965001 chr2R_20965001 RAL-727 975 chr2R 20980104 20980108 chr2R 20980201 20980207 4 98 6.5 4.0 5.2 0.6 103 chr2R 20980104 intron CG9313 + chr2R 20980156 intron CG9313 + chr2R 20980207 intron CG9313 + chr2R_4_20980001 chr2R_20980001 RAL-727 976 chr2R 20980110 20980125 chr2R 20980197 20980214 9 95 3.5 4.0 3.8 1.9 104 chr2R 20980110 intron CG9313 + chr2R 20980162 intron CG9313 + chr2R 20980214 intron CG9313 + chr2R_9_20980001 chr2R_20980001 RAL-727 977 chr2R 21158896 21158910 chr2R 21159020 21159034 6 124 3.5 6.5 5.0 1.0 138 chr2R 21158896 intron CG30389 - chr2R 21158965 intron CG30389 - chr2R 21159034 intron CG30389 - chr2R_6_21155001 chr2R_21155001 RAL-727 978 chr2R 21188222 21188234 chr2R 21188303 21188315 9 81 8.5 5.0 6.8 1.2 93 chr2R 21188222 exon tud + chr2R 21188268 intron tud + chr2R 21188315 intron tud + chr2R_9_21185001 chr2R_21185001 RAL-727 979 chr2R 21217326 21217334 chr2R 21217413 21217421 4 87 0.0 0.0 0.0 4.0 95 chr2R 21217326 exon CG15661 - chr2R 21217374 5` UTR CG15661 - chr2R 21217421 5` UTR CG15661 - chr2R_4_21215001 chr2R_21215001 RAL-727 980 chr2R 21467533 21467555 chr2R 21467618 21467626 16 85 8.0 0.5 4.2 3.1 93 chr2R 21467533 intron Sdc - chr2R 21467580 intron Sdc - chr2R 21467626 intron Sdc - chr2R_16_21465001 chr2R_21465001 RAL-727 981 chr2R 21469507 21469540 chr2R 21469782 21469813 20 274 3.0 8.5 5.8 2.9 306 chr2R 21469507 intron Sdc - chr2R 21469660 intron Sdc - chr2R 21469813 intron Sdc - chr2R_20_21465001 chr2R_21465001 RAL-727 982 chr2R 21469947 21469971 chr2R 21470029 21470058 5 85 0.5 6.0 3.2 1.2 111 chr2R 21469947 intron Sdc - chr2R 21470002 intron Sdc - chr2R 21470058 intron Sdc - chr2R_5_21470001 chr2R_21470001 RAL-727 983 chr2R 21481212 21481242 chr2R 21481363 21481393 8 150 4.0 3.0 3.5 1.8 181 chr2R 21481212 intergenic Sdc - chr2R 21481302 intergenic Sdc - chr2R 21481393 intergenic Sdc - chr2R_8_21480001 chr2R_21480001 RAL-727 984 chr2R 21546787 21546821 chr2R 21546866 21546869 5 66 0.0 1.0 0.5 3.3 82 chr2R 21546787 intron Egfr + chr2R 21546828 intron Egfr + chr2R 21546869 intron Egfr + chr2R_5_21545001 chr2R_21545001 RAL-727 985 chr2R 21605922 21605944 chr2R 21606006 21606011 8 81 2.0 2.5 2.2 2.5 89 chr2R 21605922 3` UTR CG10433 - chr2R 21605966 3` UTR CG10433 - chr2R 21606011 3` UTR CG10433 - chr2R_8_21605001 chr2R_21605001 RAL-727 986 chr2R 21641999 21642030 chr2R 21642080 21642097 12 75 5.5 2.5 4.0 2.4 98 chr2R 21641999 intergenic not near genes chr2R 21642048 intergenic not near genes chr2R 21642097 intergenic not near genes chr2R_12_21640001 chr2R_21640001 RAL-727 987 chr2R 21700174 21700180 chr2R 21700246 21700258 8 81 1.0 6.0 3.5 1.8 84 chr2R 21700174 intron HmgZ - chr2R 21700216 intron HmgZ - chr2R 21700258 intron HmgZ - chr2R_8_21700001 chr2R_21700001 RAL-727 988 chr2R 21738278 21738308 chr2R 21747438 21747467 roo 7 9156 1.0 2.5 1.8 2.5 9189 chr2R 21738278 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-727 989 chr2R 21753089 21753098 chr2R 21753574 21753583 roo 9 484 10.0 8.0 9.0 0.9 494 chr2R 21753089 intergenic not near genes chr2R 21753336 intergenic not near genes chr2R 21753583 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-727 990 chr2R 21753102 21753115 chr2R 21753568 21753600 roo 15 484 7.0 6.5 6.8 1.9 498 chr2R 21753102 intergenic not near genes chr2R 21753351 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_15_21750001 chr2R_21750001 RAL-727 991 chr2R 21759564 21759577 chr2R 21759649 21759664 8 85 3.5 4.0 3.8 1.7 100 chr2R 21759564 intergenic not near genes chr2R 21759614 intergenic not near genes chr2R 21759664 intergenic not near genes chr2R_8_21755001 chr2R_21755001 RAL-727 992 chr2R 21759589 21759592 chr2R 21759647 21759679 4 80 2.0 4.0 3.0 1.0 90 chr2R 21759589 intergenic not near genes chr2R 21759634 intergenic not near genes chr2R 21759679 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-727 993 chr2R 21777427 21777445 chr2R 21777510 21777528 5 83 4.5 3.5 4.0 1.0 101 chr2R 21777427 intergenic not near genes chr2R 21777478 intergenic not near genes chr2R 21777528 intergenic not near genes chr2R_5_21775001 chr2R_21775001 RAL-727 994 chr2R 21780561 21780585 chr2R 21781004 21781024 8 442 3.0 5.0 4.0 1.6 463 chr2R 21780561 intergenic not near genes chr2R 21780792 intergenic not near genes chr2R 21781024 intergenic not near genes chr2R_8_21780001 chr2R_21780001 RAL-727 995 chr2R 21809524 21809558 chr2R 21817762 21817798 roo 23 8240 4.5 5.5 5.0 3.8 8274 chr2R 21809524 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_23_21810001 chr2R_21810001 RAL-727 996 chr2R 21880609 21880634 chr2R 21880706 21880733 13 97 3.0 4.0 3.5 2.9 124 chr2R 21880609 intron Fili + chr2R 21880671 intron Fili + chr2R 21880733 intron Fili + chr2R_13_21880001 chr2R_21880001 RAL-727 997 chr2R 21963196 21963217 chr2R 21963281 21963302 9 85 4.0 1.0 2.5 2.6 106 chr2R 21963196 intergenic not near genes chr2R 21963249 intergenic not near genes chr2R 21963302 intergenic not near genes chr2R_9_21960001 chr2R_21960001 RAL-727 998 chr2R 21992423 21992429 chr2R 21992500 21992506 5 76 2.5 10.5 6.5 0.7 83 chr2R 21992423 intron CG34370 - chr2R 21992464 intron CG34370 - chr2R 21992506 intron CG34370 - chr2R_5_21990001 chr2R_21990001 RAL-727 999 chr2R 22006640 22006673 chr2R 22006717 22006750 22 72 4.5 2.0 3.2 5.2 110 chr2R 22006640 intron CG34370 - chr2R 22006695 intron CG34370 - chr2R 22006750 intron CG34370 - chr2R_22_22005001 chr2R_22005001 RAL-727 1000 chr2R 22029479 22029503 chr2R 22029617 22029641 9 138 3.0 3.5 3.2 2.1 162 chr2R 22029479 intron CG34370 - chr2R 22029560 intron CG34370 - chr2R 22029641 intron CG34370 - chr2R_9_22025001 chr2R_22025001 RAL-727 1001 chr2R 22072680 22072713 chr2R 22072765 22072798 24 85 4.5 3.5 4.0 4.8 118 chr2R 22072680 intron CG11474 - chr2R 22072739 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_24_22070001 chr2R_22070001 RAL-727 1002 chr2R 22095966 22095994 chr2R 22096049 22096076 15 82 4.0 3.5 3.8 3.1 110 chr2R 22095966 intron CG11073 - chr2R 22096021 intron CG11073 - chr2R 22096076 intron CG11073 - chr2R_15_22095001 chr2R_22095001 RAL-727 1003 chr2R 22102115 22102159 chr2R 22102203 22102237 10 82 0.0 7.0 3.5 2.2 122 chr2R 22102115 intergenic not near genes chr2R 22102176 intergenic not near genes chr2R 22102237 intergenic not near genes chr2R_10_22100001 chr2R_22100001 RAL-727 1004 chr2R 22135439 22135467 chr2R 22135548 22135576 4 108 3.5 2.5 3.0 1.0 137 chr2R 22135439 intergenic not near genes chr2R 22135508 intergenic not near genes chr2R 22135576 intergenic not near genes chr2R_4_22135001 chr2R_22135001 RAL-727 1005 chr2R 22290078 22290106 chr2R 22290162 22290187 9 83 2.0 4.5 3.2 2.1 109 chr2R 22290078 intergenic not near genes chr2R 22290132 intergenic not near genes chr2R 22290187 intergenic not near genes chr2R_9_22290001 chr2R_22290001 RAL-727 1006 chr2R 22292071 22292107 chr2R 22292158 22292194 11 86 1.5 4.0 2.8 2.9 123 chr2R 22292071 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292194 5` UTR CR43422 + chr2R_11_22290001 chr2R_22290001 RAL-727 1007 chr2R 22349690 22349724 chr2R 22351474 22351505 jockey 13 1783 5.0 7.0 6.0 1.9 1815 chr2R 22349690 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 RAL-727 1008 chr2R 22360380 22360413 chr2R 22360813 22360813 jockey 12 424 4.5 4.5 4.5 2.2 433 chr2R 22360380 intron Liprin-gamma - chr2R 22360596 intron Liprin-gamma - chr2R 22360813 intron Liprin-gamma - chr2R_12_22360001 chr2R_22360001 RAL-727 1009 chr2R 22386772 22386796 chr2R 22386854 22386878 11 82 6.0 6.5 6.2 1.5 106 chr2R 22386772 intron CG13506 + chr2R 22386825 intron CG13506 + chr2R 22386878 intron CG13506 + chr2R_11_22385001 chr2R_22385001 RAL-727 1010 chr2R 22460380 22460406 chr2R 22460459 22460485 12 79 3.0 4.5 3.8 2.5 105 chr2R 22460380 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_12_22460001 chr2R_22460001 RAL-727 1011 chr2R 22524975 22524989 chr2R 22525051 22525064 7 75 4.0 6.5 5.2 1.1 89 chr2R 22524975 intron px - chr2R 22525020 intron px - chr2R 22525064 intron px - chr2R_7_22525001 chr2R_22525001 RAL-727 1012 chr2R 22525763 22525771 chr2R 22529322 22529330 jockey 5 3559 3.0 4.0 3.5 1.1 3567 chr2R 22525763 intron px - chr2R 22527546 intron px - chr2R 22529330 intron px - chr2R_5_22525001 chr2R_22525001 RAL-727 1013 chr2R 22620843 22620859 chr2R 22620937 22620948 7 97 2.0 8.0 5.0 1.2 105 chr2R 22620843 5` UTR CG33143 + chr2R 22620896 5` UTR CG33143 + chr2R 22620948 5` UTR CG33143 + chr2R_7_22620001 chr2R_22620001 RAL-727 1014 chr2R 22646467 22646473 chr2R 22646559 22646565 6 91 7.0 0.0 3.5 1.3 98 chr2R 22646467 intergenic CG2852 -,CG30195 - chr2R 22646516 intergenic CG30195 -,CG2852 - chr2R 22646565 intergenic CG30195 -,CG2852 - chr2R_6_22645001 chr2R_22645001 RAL-727 1015 chr2R 22672914 22672945 chr2R 22673043 22673054 10 120 5.5 3.5 4.5 1.8 140 chr2R 22672914 3` UTR RYBP + chr2R 22672984 3` UTR RYBP + chr2R 22673054 3` UTR RYBP + chr2R_10_22670001 chr2R_22670001 RAL-727 1016 chr2R 22774960 22774998 chr2R 22775379 22775417 jockey 25 418 7.0 3.0 5.0 4.2 457 chr2R 22774960 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775417 intron CG42260 - chr2R_25_22775001 chr2R_22775001 RAL-727 1017 chr2R 22907401 22907423 chr2R 22907494 22907502 4 88 5.5 2.5 4.0 0.8 101 chr2R 22907401 intron nahoda + chr2R 22907452 intron nahoda + chr2R 22907502 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-727 1018 chr2R 22951715 22951868 chr2R 22951855 22951954 11 114 0.0 0.0 0.0 11.0 239 chr2R 22951715 3` UTR CR32835 - chr2R 22951834 3` UTR CR32835 - chr2R 22951954 intron CR32835 - chr2R_11_22950001 chr2R_22950001 RAL-727 1019 chr2R 23023487 23023503 chr2R 23023597 23023612 11 109 0.0 13.5 6.8 1.4 125 chr2R 23023487 intron,intron twi +,CG42741 - chr2R 23023550 intron,intron twi +,CG42741 - chr2R 23023612 intron,intron twi +,CG42741 - chr2R_11_23020001 chr2R_23020001 RAL-727 1020 chr2R 23070408 23070440 chr2R 23070504 23070536 30 94 3.0 4.0 3.5 6.7 128 chr2R 23070408 intron l(2)k09913 + chr2R 23070472 intron l(2)k09913 + chr2R 23070536 intron l(2)k09913 + chr2R_30_23070001 chr2R_23070001 RAL-727 1021 chr2R 23110911 23110941 chr2R 23111487 23111490 13 573 1.5 5.5 3.5 2.9 579 chr2R 23110911 3` UTR CR44781 - chr2R 23111200 intergenic CR44781 - chr2R 23111490 intergenic CR44781 - chr2R_13_23110001 chr2R_23110001 RAL-727 1022 chr2R 23155718 23155752 chr2R 23155844 23155878 18 125 3.0 6.0 4.5 3.3 160 chr2R 23155718 intron CG9899 + chr2R 23155798 intron CG9899 + chr2R 23155878 intron CG9899 + chr2R_18_23155001 chr2R_23155001 RAL-727 1023 chr2R 23224169 23224205 chr2R 23224288 23224321 10 117 2.5 5.5 4.0 2.0 152 chr2R 23224169 intergenic not near genes chr2R 23224245 intergenic not near genes chr2R 23224321 intergenic not near genes chr2R_10_23220001 chr2R_23220001 RAL-727 1024 chr2R 23228265 23228297 chr2R 23228356 23228388 13 91 3.5 3.5 3.5 2.9 123 chr2R 23228265 intergenic not near genes chr2R 23228326 intergenic not near genes chr2R 23228388 intergenic not near genes chr2R_13_23225001 chr2R_23225001 RAL-727 1025 chr2R 23304278 23304293 chr2R 23304645 23304660 4 367 4.0 0.0 2.0 1.3 382 chr2R 23304278 intergenic not near genes chr2R 23304469 intergenic not near genes chr2R 23304660 intergenic not near genes chr2R_4_23300001 chr2R_23300001 RAL-727 1026 chr2R 23356272 23356305 chr2R 23356361 23356393 16 86 10.0 2.5 6.2 2.2 121 chr2R 23356272 3` UTR Rpi + chr2R 23356332 3` UTR Rpi + chr2R 23356393 3` UTR,3` UTR Rpi +,CG3500 - chr2R_16_23355001 chr2R_23355001 RAL-727 1027 chr2R 23427759 23427793 chr2R 23427901 23427935 16 140 2.5 1.5 2.0 5.3 176 chr2R 23427759 intron CG9815 - chr2R 23427847 intron CG9815 - chr2R 23427935 intron CG9815 - chr2R_16_23425001 chr2R_23425001 RAL-727 1028 chr2R 23437229 23437247 chr2R 23437306 23437324 6 75 1.5 6.0 3.8 1.2 95 chr2R 23437229 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437324 intergenic not near genes chr2R_6_23435001 chr2R_23435001 RAL-727 1029 chr2R 23463385 23463419 chr2R 23463464 23463498 9 74 3.5 3.5 3.5 2.0 113 chr2R 23463385 intron CG43795 + chr2R 23463442 intron CG43795 + chr2R 23463498 intron CG43795 + chr2R_9_23460001 chr2R_23460001 RAL-727 1030 chr2R 23559875 23559900 chr2R 23560155 23560188 12 287 5.0 6.5 5.8 1.8 313 chr2R 23559875 exon ItgalphaPS5 + chr2R 23560032 intron ItgalphaPS5 + chr2R 23560188 exon ItgalphaPS5 + chr2R_12_23560001 chr2R_23560001 RAL-727 1031 chr2R 23636720 23636742 chr2R 23636796 23636820 14 77 4.5 5.5 5.0 2.3 100 chr2R 23636720 intron retn + chr2R 23636770 intron retn + chr2R 23636820 intron retn + chr2R_14_23635001 chr2R_23635001 RAL-727 1032 chr2R 23684136 23684153 chr2R 23684231 23684249 10 95 7.0 6.0 6.5 1.3 113 chr2R 23684136 exon St3 + chr2R 23684192 intron St3 + chr2R 23684249 exon St3 + chr2R_10_23680001 chr2R_23680001 RAL-727 1033 chr2R 23684154 23684160 chr2R 23684230 23684244 5 87 3.0 5.5 4.2 1.0 90 chr2R 23684154 exon St3 + chr2R 23684199 intron St3 + chr2R 23684244 intron St3 + chr2R_5_23680001 chr2R_23680001 RAL-727 1034 chr2R 23784471 23784505 chr2R 23784549 23784581 21 75 2.0 5.0 3.5 4.7 110 chr2R 23784471 intron CG9850 - chr2R 23784526 intron CG9850 - chr2R 23784581 intron CG9850 - chr2R_21_23780001 chr2R_23780001 RAL-727 1035 chr2R 23986513 23986547 chr2R 23986593 23986624 12 80 2.5 5.0 3.8 2.5 111 chr2R 23986513 intron Phm - chr2R 23986568 intron Phm - chr2R 23986624 intron,5` UTR Phm -,CG30178 + chr2R_12_23985001 chr2R_23985001 RAL-727 1036 chr2R 24031381 24031411 chr2R 24031465 24031495 18 83 3.0 4.5 3.8 3.8 114 chr2R 24031381 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_18_24030001 chr2R_24030001 RAL-727 1037 chr2R 24077935 24077959 chr2R 24078010 24078035 15 72 4.0 11.5 7.8 1.7 100 chr2R 24077935 3` UTR Mlp60A + chr2R 24077985 3` UTR Mlp60A + chr2R 24078035 3` UTR Mlp60A + chr2R_15_24075001 chr2R_24075001 RAL-727 1038 chr2R 24087191 24087217 chr2R 24087312 24087339 12 119 5.0 5.0 5.0 2.0 148 chr2R 24087191 intron snama + chr2R 24087265 intron snama + chr2R 24087339 intron snama + chr2R_12_24085001 chr2R_24085001 RAL-727 1039 chr2R 24147090 24147095 chr2R 24154644 24154662 412 6 7567 2.0 3.0 2.5 1.7 7572 chr2R 24147090 intron Dat + chr2R 24150876 intron Dat + chr2R 24154662 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-727 1040 chr2R 24177234 24177263 chr2R 24184719 24184748 412 13 7485 12.0 2.5 7.2 1.6 7514 chr2R 24177234 3` UTR Nop60B + chr2R 24180991 intron Nop60B + chr2R 24184748 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-727 1041 chr2R 24212301 24212310 chr2R 24212390 24212408 5 96 10.5 3.5 7.0 0.6 107 chr2R 24212301 intergenic CG30419 - chr2R 24212354 intergenic CG30419 - chr2R 24212408 intergenic CG30419 - chr2R_5_24210001 chr2R_24210001 RAL-727 1042 chr2R 24212313 24212320 chr2R 24212388 24212418 6 90 8.0 3.0 5.5 0.9 105 chr2R 24212313 intergenic CG30419 - chr2R 24212366 intergenic CG30419 - chr2R 24212418 intergenic CG30419 - chr2R_6_24210001 chr2R_24210001 RAL-727 1043 chr2R 24222960 24222986 chr2R 24223115 24223135 10 154 4.5 3.5 4.0 2.0 175 chr2R 24222960 intron CG30419 - chr2R 24223048 intron CG30419 - chr2R 24223135 intron CG30419 - chr2R_10_24220001 chr2R_24220001 RAL-727 1044 chr2R 24320706 24320739 chr2R 24320916 24320950 14 208 2.5 5.0 3.8 2.9 244 chr2R 24320706 intergenic not near genes chr2R 24320828 intergenic not near genes chr2R 24320950 intergenic not near genes chr2R_14_24320001 chr2R_24320001 RAL-727 1045 chr2R 24353426 24353462 chr2R 24361788 24361818 roo 18 8361 3.0 5.0 4.0 3.6 8392 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361818 intron,intron bs +,CR44811 - chr2R_18_24355001 chr2R_24355001 RAL-727 1046 chr2R 24366248 24366276 chr2R 24366335 24366363 15 86 5.5 4.0 4.8 2.6 115 chr2R 24366248 intron,intron bs +,CR44811 - chr2R 24366306 intron,intron bs +,CR44811 - chr2R 24366363 intron,intron bs +,CR44811 - chr2R_15_24365001 chr2R_24365001 RAL-727 1047 chr2R 24383829 24383831 chr2R 24383910 24383911 4 80 4.5 2.0 3.2 1.0 82 chr2R 24383829 intron mAChR-A - chr2R 24383870 intron mAChR-A - chr2R 24383911 intron mAChR-A - chr2R_4_24380001 chr2R_24380001 RAL-727 1048 chr2R 24383833 24383857 chr2R 24383907 24383938 7 80 2.0 2.0 2.0 2.3 105 chr2R 24383833 intron mAChR-A - chr2R 24383886 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_7_24380001 chr2R_24380001 RAL-727 1049 chr2R 24542598 24542625 chr2R 24542694 24542721 9 94 4.5 1.5 3.0 2.2 123 chr2R 24542598 intron,intron CG4622 -,ITP + chr2R 24542660 intron,intron CG4622 -,ITP + chr2R 24542721 intron,intron CG4622 -,ITP + chr2R_9_24540001 chr2R_24540001 RAL-727 1050 chr2R 24592953 24592977 chr2R 24593045 24593070 10 93 9.0 3.0 6.0 1.4 117 chr2R 24592953 intron pio + chr2R 24593012 intron pio + chr2R 24593070 intron pio + chr2R_10_24590001 chr2R_24590001 RAL-727 1051 chr2R 24647595 24647609 chr2R 24655152 24655165 412 6 7556 11.5 3.5 7.5 0.7 7570 chr2R 24647595 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655165 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-727 1052 chr2R 24727884 24727918 chr2R 24735392 24735397 mdg1 13 7505 2.5 5.5 4.0 2.6 7513 chr2R 24727884 intron Mid1 - chr2R 24731640 intron Mid1 - chr2R 24735397 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-727 1053 chr2R 24737145 24737169 chr2R 24737265 24737285 4 118 6.0 2.0 4.0 0.8 140 chr2R 24737145 intergenic Mid1 - chr2R 24737215 intergenic not near genes chr2R 24737285 intergenic not near genes chr2R_4_24735001 chr2R_24735001 RAL-727 1054 chr2R 24742121 24742145 chr2R 24742204 24742228 8 82 5.0 2.5 3.8 1.7 107 chr2R 24742121 intergenic not near genes chr2R 24742174 intergenic not near genes chr2R 24742228 intergenic not near genes chr2R_8_24740001 chr2R_24740001 RAL-727 1055 chr2R 24763612 24763643 chr2R 24765587 24765602 G2 7 1967 7.0 5.5 6.2 1.0 1990 chr2R 24763612 exon CG3894 + chr2R 24764607 intron CG3894 + chr2R 24765602 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-727 1056 chr2R 24859845 24859864 chr2R 24859926 24859950 9 83 1.0 2.5 1.8 3.2 105 chr2R 24859845 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859950 5` UTR CR44829 + chr2R_9_24855001 chr2R_24855001 RAL-727 1057 chr2R 24884050 24884079 chr2R 24884132 24884161 18 82 3.5 5.0 4.2 3.5 111 chr2R 24884050 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884161 intron NKAIN + chr2R_18_24880001 chr2R_24880001 RAL-727 1058 chr2R 25014544 25014551 chr2R 25014619 25014627 6 76 7.5 7.5 7.5 0.7 83 chr2R 25014544 intron uzip + chr2R 25014586 intron uzip + chr2R 25014627 intron uzip + chr2R_6_25010001 chr2R_25010001 RAL-727 1059 chr2R 25014554 25014567 chr2R 25014618 25014643 14 71 5.0 7.5 6.2 1.9 89 chr2R 25014554 intron uzip + chr2R 25014598 intron uzip + chr2R 25014643 intron uzip + chr2R_14_25010001 chr2R_25010001 RAL-727 1060 chr2R 25018338 25018374 chr2R 25018439 25018472 15 99 3.0 6.5 4.8 2.6 134 chr2R 25018338 intron uzip + chr2R 25018405 intron uzip + chr2R 25018472 intron uzip + chr2R_15_25015001 chr2R_25015001 RAL-727 1061 chr2R 25022646 25022671 chr2R 25022730 25022737 15 83 5.5 6.5 6.0 2.1 91 chr2R 25022646 intron uzip + chr2R 25022692 intron uzip + chr2R 25022737 intron uzip + chr2R_15_25020001 chr2R_25020001 RAL-727 1062 chr2R 25061338 25061365 chr2R 25061421 25061448 13 80 5.5 4.0 4.8 2.2 110 chr2R 25061338 intergenic not near genes chr2R 25061393 intergenic not near genes chr2R 25061448 intergenic not near genes chr2R_13_25060001 chr2R_25060001 RAL-727 1063 chr2R 25081616 25081639 chr2R 25082708 25082735 11 1093 3.0 10.5 6.8 1.4 1119 chr2R 25081616 intron gol - chr2R 25082176 intron gol - chr2R 25082735 intron gol - chr2R_11_25080001 chr2R_25080001 RAL-727 1064 chr2R 25101276 25101301 chr2R 25101378 25101389 12 101 8.5 5.5 7.0 1.5 113 chr2R 25101276 intron lov - chr2R 25101332 intron lov - chr2R 25101389 intron lov - chr2R_12_25100001 chr2R_25100001 RAL-727 1065 chr2R 25131009 25131045 chr2R 25131086 25131122 25 77 1.0 2.0 1.5 10.0 113 chr2R 25131009 intron lov - chr2R 25131066 intron lov - chr2R 25131122 intron lov - chr2R_25_25130001 chr2R_25130001 RAL-727 1066 chr2R 25141650 25141684 chr2R 25159340 25159374 roo 16 17690 4.5 5.0 4.8 2.8 17724 chr2R 25141650 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_16_25150001 chr2R_25150001 RAL-727 1067 chr2R 25167687 25167695 chr2R 25167765 25167777 7 81 7.0 4.0 5.5 1.1 90 chr2R 25167687 5` UTR CG34038 + chr2R 25167732 5` UTR CG34038 + chr2R 25167777 5` UTR CG34038 + chr2R_7_25165001 chr2R_25165001 RAL-727 1068 chr3L 110210 110244 chr3L 119377 119411 roo 13 9166 6.0 2.5 4.2 2.5 9201 chr3L 110210 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_13_110001 chr3L_110001 RAL-727 1069 chr3L 160229 160264 chr3L 160328 160365 21 100 7.5 6.5 7.0 2.6 136 chr3L 160229 intron p130CAS + chr3L 160297 intron p130CAS + chr3L 160365 intron p130CAS + chr3L_21_160001 chr3L_160001 RAL-727 1070 chr3L 365527 365556 chr3L 365613 365642 13 85 3.0 6.5 4.8 2.2 115 chr3L 365527 3` UTR CG1233 + chr3L 365584 3` UTR CG1233 + chr3L 365642 3` UTR CG1233 + chr3L_13_365001 chr3L_365001 RAL-727 1071 chr3L 402696 402718 chr3L 409740 409771 297 14 7047 5.0 7.5 6.2 1.9 7075 chr3L 402696 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_14_405001 chr3L_405001 RAL-727 1072 chr3L 421048 421083 chr3L 421143 421179 20 95 4.5 3.5 4.0 4.0 131 chr3L 421048 intergenic not near genes chr3L 421114 intergenic not near genes chr3L 421179 intergenic not near genes chr3L_20_420001 chr3L_420001 RAL-727 1073 chr3L 428195 428210 chr3L 428316 428331 7 121 7.0 0.0 3.5 1.6 136 chr3L 428195 intergenic not near genes chr3L 428263 intergenic not near genes chr3L 428331 intergenic not near genes chr3L_7_425001 chr3L_425001 RAL-727 1074 chr3L 477892 477903 chr3L 477974 477986 8 82 4.0 0.0 2.0 2.7 94 chr3L 477892 intron klar - chr3L 477939 intron klar - chr3L 477986 intron klar - chr3L_8_475001 chr3L_475001 RAL-727 1075 chr3L 535060 535078 chr3L 535126 535160 9 78 5.0 8.0 6.5 1.2 100 chr3L 535060 intron klar - chr3L 535110 intron klar - chr3L 535160 intron klar - chr3L_9_535001 chr3L_535001 RAL-727 1076 chr3L 606895 606903 chr3L 606971 606979 6 76 2.0 0.0 1.0 3.0 84 chr3L 606895 intergenic Reg-2 - chr3L 606937 intergenic Reg-2 - chr3L 606979 intergenic Reg-2 - chr3L_6_605001 chr3L_605001 RAL-727 1077 chr3L 642471 642499 chr3L 642562 642590 11 91 4.5 8.0 6.2 1.5 119 chr3L 642471 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642590 5` UTR CR43334 + chr3L_11_640001 chr3L_640001 RAL-727 1078 chr3L 651387 651422 chr3L 651475 651510 14 87 7.0 6.0 6.5 1.9 123 chr3L 651387 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651510 intergenic CG3402 -,Gale + chr3L_14_650001 chr3L_650001 RAL-727 1079 chr3L 789913 789947 chr3L 790398 790432 roo 17 485 3.0 6.5 4.8 2.9 519 chr3L 789913 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790432 intergenic not near genes chr3L_17_790001 chr3L_790001 RAL-727 1080 chr3L 858005 858032 chr3L 866486 866512 Tirant 8 8480 3.5 5.0 4.2 1.5 8507 chr3L 858005 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-727 1081 chr3L 900008 900020 chr3L 900077 900104 8 82 0.0 7.5 3.8 1.7 96 chr3L 900008 intergenic not near genes chr3L 900056 intergenic not near genes chr3L 900104 intergenic not near genes chr3L_8_900001 chr3L_900001 RAL-727 1082 chr3L 925179 925209 chr3L 932605 932635 mdg1 25 7425 6.5 4.0 5.2 4.0 7456 chr3L 925179 intron Glut1 + chr3L 928907 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_25_925001 chr3L_925001 RAL-727 1083 chr3L 933814 933848 chr3L 934139 934173 12 323 4.0 3.0 3.5 2.7 359 chr3L 933814 intron Glut1 + chr3L 933994 intron Glut1 + chr3L 934173 intron Glut1 + chr3L_12_930001 chr3L_930001 RAL-727 1084 chr3L 939772 939800 chr3L 940893 940921 jockey 10 1120 2.5 5.0 3.8 2.1 1149 chr3L 939772 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-727 1085 chr3L 961021 961035 chr3L 961114 961128 8 93 5.5 3.0 4.2 1.5 107 chr3L 961021 intron Glut1 + chr3L 961074 intron Glut1 + chr3L 961128 intron Glut1 + chr3L_8_960001 chr3L_960001 RAL-727 1086 chr3L 1003052 1003081 chr3L 1003129 1003158 13 76 7.5 7.0 7.2 1.6 106 chr3L 1003052 intron trio - chr3L 1003105 intron trio - chr3L 1003158 intron trio - chr3L_13_1000001 chr3L_1000001 RAL-727 1087 chr3L 1015155 1015169 chr3L 1015227 1015256 8 79 0.5 1.5 1.0 4.0 101 chr3L 1015155 intron trio - chr3L 1015206 intron trio - chr3L 1015256 intron trio - chr3L_8_1015001 chr3L_1015001 RAL-727 1088 chr3L 1040548 1040574 chr3L 1040632 1040657 12 84 6.5 4.5 5.5 1.8 109 chr3L 1040548 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040657 intron bab1 - chr3L_12_1040001 chr3L_1040001 RAL-727 1089 chr3L 1042964 1042988 chr3L 1043042 1043066 10 76 4.0 3.5 3.8 2.1 102 chr3L 1042964 intron bab1 - chr3L 1043015 intron bab1 - chr3L 1043066 intron bab1 - chr3L_10_1040001 chr3L_1040001 RAL-727 1090 chr3L 1084190 1084221 chr3L 1084315 1084342 5 124 4.5 3.5 4.0 1.0 152 chr3L 1084190 intron bab1 - chr3L 1084266 intron bab1 - chr3L 1084342 intron bab1 - chr3L_5_1080001 chr3L_1080001 RAL-727 1091 chr3L 1154131 1154162 chr3L 1163280 1163312 roo 11 9149 4.0 2.5 3.2 2.6 9181 chr3L 1154131 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163312 intron bab2 - chr3L_11_1155001 chr3L_1155001 RAL-727 1092 chr3L 1219596 1219623 chr3L 1227329 1227356 412 9 7730 1.5 4.0 2.8 2.4 7760 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-727 1093 chr3L 1347158 1347192 chr3L 1347243 1347273 9 78 1.0 5.0 3.0 2.2 115 chr3L 1347158 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347273 intron Ptp61F - chr3L_9_1345001 chr3L_1345001 RAL-727 1094 chr3L 1374432 1374447 chr3L 1374508 1374524 10 76 10.5 6.5 8.5 1.1 92 chr3L 1374432 intron,intron Ptp61F -,ru + chr3L 1374478 intron,intron Ptp61F -,ru + chr3L 1374524 intron,intron Ptp61F -,ru + chr3L_10_1370001 chr3L_1370001 RAL-727 1095 chr3L 1415773 1415807 chr3L 1415855 1415888 9 74 1.0 3.0 2.0 3.0 115 chr3L 1415773 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415888 intron Ptp61F - chr3L_9_1415001 chr3L_1415001 RAL-727 1096 chr3L 1418055 1418074 chr3L 1418132 1418151 4 77 2.5 3.0 2.8 1.1 96 chr3L 1418055 intron Ptp61F - chr3L 1418103 intron Ptp61F - chr3L 1418151 intron Ptp61F - chr3L_4_1415001 chr3L_1415001 RAL-727 1097 chr3L 1477392 1477417 chr3L 1477482 1477507 8 88 5.5 0.0 2.8 2.1 115 chr3L 1477392 intron stet - chr3L 1477450 intron stet - chr3L 1477507 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-727 1098 chr3L 1505996 1506031 chr3L 1513593 1513628 17.6 16 7596 8.5 8.5 8.5 1.7 7632 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-727 1099 chr3L 1571471 1571490 chr3L 1571556 1571575 4 84 2.5 3.5 3.0 1.0 104 chr3L 1571471 intron CG12004 + chr3L 1571523 intron CG12004 + chr3L 1571575 intron CG12004 + chr3L_4_1570001 chr3L_1570001 RAL-727 1100 chr3L 1583043 1583066 chr3L 1583129 1583152 13 85 2.0 4.0 3.0 3.2 109 chr3L 1583043 intron CG13917 + chr3L 1583098 intron CG13917 + chr3L 1583152 intron CG13917 + chr3L_13_1580001 chr3L_1580001 RAL-727 1101 chr3L 1634516 1634534 chr3L 1634595 1634612 12 76 13.0 3.5 8.2 1.3 96 chr3L 1634516 intron nSyb - chr3L 1634564 intron nSyb - chr3L 1634612 intron nSyb - chr3L_12_1630001 chr3L_1630001 RAL-727 1102 chr3L 1634535 1634548 chr3L 1634594 1634627 10 72 5.5 2.5 4.0 2.0 92 chr3L 1634535 intron nSyb - chr3L 1634581 intron nSyb - chr3L 1634627 intron nSyb - chr3L_10_1630001 chr3L_1630001 RAL-727 1103 chr3L 1809258 1809291 chr3L 1809343 1809376 18 83 3.0 1.0 2.0 6.0 118 chr3L 1809258 intergenic not near genes chr3L 1809317 intergenic not near genes chr3L 1809376 intergenic not near genes chr3L_18_1805001 chr3L_1805001 RAL-727 1104 chr3L 1880452 1880461 chr3L 1880521 1880544 6 78 7.0 11.0 9.0 0.6 92 chr3L 1880452 intron CG13937 - chr3L 1880498 intron CG13937 - chr3L 1880544 intron CG13937 - chr3L_6_1880001 chr3L_1880001 RAL-727 1105 chr3L 2139206 2139226 chr3L 2139287 2139307 9 79 5.0 3.5 4.2 1.7 101 chr3L 2139206 intron zormin - chr3L 2139256 intron zormin - chr3L 2139307 intron zormin - chr3L_9_2135001 chr3L_2135001 RAL-727 1106 chr3L 2168771 2168808 chr3L 2168862 2168899 16 88 3.5 5.5 4.5 2.9 128 chr3L 2168771 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_16_2165001 chr3L_2165001 RAL-727 1107 chr3L 2176685 2176713 chr3L 2177094 2177119 9 407 6.0 6.0 6.0 1.3 434 chr3L 2176685 intergenic not near genes chr3L 2176902 intergenic not near genes chr3L 2177119 intergenic not near genes chr3L_9_2175001 chr3L_2175001 RAL-727 1108 chr3L 2199811 2199821 chr3L 2199887 2199897 7 76 1.0 8.0 4.5 1.3 86 chr3L 2199811 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199897 intergenic not near genes chr3L_7_2195001 chr3L_2195001 RAL-727 1109 chr3L 2308005 2308032 chr3L 2308111 2308138 16 104 9.5 5.0 7.2 2.0 133 chr3L 2308005 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_16_2305001 chr3L_2305001 RAL-727 1110 chr3L 2331582 2331616 chr3L 2331659 2331693 15 73 2.5 4.5 3.5 3.3 111 chr3L 2331582 intron MsR1 + chr3L 2331638 intron MsR1 + chr3L 2331693 intron MsR1 + chr3L_15_2330001 chr3L_2330001 RAL-727 1111 chr3L 2447508 2447536 chr3L 2456660 2456692 roo 8 9155 7.5 4.0 5.8 1.2 9184 chr3L 2447508 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-727 1112 chr3L 2478878 2479028 chr3L 2478958 2479125 12 88 5.5 6.0 5.8 1.8 247 chr3L 2478878 intron CG45186 + chr3L 2479002 intron CG45186 + chr3L 2479125 intron CG45186 + chr3L_12_2475001 chr3L_2475001 RAL-727 1113 chr3L 2533653 2533682 chr3L 2533735 2533762 7 78 2.5 8.5 5.5 1.1 109 chr3L 2533653 intron Spn - chr3L 2533708 intron Spn - chr3L 2533762 intron Spn - chr3L_7_2530001 chr3L_2530001 RAL-727 1114 chr3L 2534613 2534646 chr3L 2534696 2534729 8 82 0.0 6.5 3.2 1.9 116 chr3L 2534613 intron Spn - chr3L 2534671 intron Spn - chr3L 2534729 exon Spn - chr3L_8_2530001 chr3L_2530001 RAL-727 1115 chr3L 2561532 2561560 chr3L 2561609 2561637 12 76 3.0 4.5 3.8 2.5 105 chr3L 2561532 intron msn - chr3L 2561584 intron msn - chr3L 2561637 intron msn - chr3L_12_2560001 chr3L_2560001 RAL-727 1116 chr3L 2591904 2591925 chr3L 2592003 2592024 13 99 5.0 3.5 4.2 2.5 120 chr3L 2591904 intron dos + chr3L 2591964 intron dos + chr3L 2592024 intron dos + chr3L_13_2590001 chr3L_2590001 RAL-727 1117 chr3L 2626410 2626444 chr3L 2626534 2626568 11 121 4.5 4.0 4.2 2.1 158 chr3L 2626410 intron Pxn - chr3L 2626489 intron Pxn - chr3L 2626568 intron Pxn - chr3L_11_2625001 chr3L_2625001 RAL-727 1118 chr3L 2683019 2683030 chr3L 2683100 2683111 5 81 5.0 0.0 2.5 1.4 92 chr3L 2683019 intron Fife - chr3L 2683065 intron Fife - chr3L 2683111 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-727 1119 chr3L 2711016 2711041 chr3L 2711113 2711138 6 96 5.0 3.0 4.0 1.2 122 chr3L 2711016 intron Fife - chr3L 2711077 intron Fife - chr3L 2711138 intron Fife - chr3L_6_2710001 chr3L_2710001 RAL-727 1120 chr3L 2719539 2719556 chr3L 2719641 2719658 5 102 5.5 3.0 4.2 1.0 119 chr3L 2719539 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719658 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-727 1121 chr3L 2766742 2766766 chr3L 2766839 2766863 9 97 3.0 6.0 4.5 1.6 121 chr3L 2766742 intergenic Non2 +,Mrtf - chr3L 2766802 intergenic Non2 +,Mrtf - chr3L 2766863 intergenic Non2 +,Mrtf - chr3L_9_2765001 chr3L_2765001 RAL-727 1122 chr3L 2795729 2795756 chr3L 2795852 2795879 11 120 1.5 5.5 3.5 2.4 150 chr3L 2795729 intron CG43444 - chr3L 2795804 intron CG43444 - chr3L 2795879 intron CG43444 - chr3L_11_2795001 chr3L_2795001 RAL-727 1123 chr3L 2897029 2897064 chr3L 2897202 2897237 18 167 3.0 4.0 3.5 4.0 208 chr3L 2897029 intron Shab + chr3L 2897133 intron Shab + chr3L 2897237 intron Shab + chr3L_18_2895001 chr3L_2895001 RAL-727 1124 chr3L 2906059 2906098 chr3L 2906146 2906185 15 84 1.0 5.5 3.2 3.6 126 chr3L 2906059 intron Shab + chr3L 2906122 intron Shab + chr3L 2906185 intron Shab + chr3L_15_2905001 chr3L_2905001 RAL-727 1125 chr3L 2927837 2927872 chr3L 2936114 2936149 Tirant 11 8275 2.5 5.0 3.8 2.3 8312 chr3L 2927837 intron Shab + chr3L 2931993 intron Shab + chr3L 2936149 intron Shab + chr3L_11_2930001 chr3L_2930001 RAL-727 1126 chr3L 2987714 2987726 chr3L 2987796 2987803 5 81 4.5 1.0 2.8 1.3 89 chr3L 2987714 intergenic not near genes chr3L 2987758 intergenic not near genes chr3L 2987803 intergenic not near genes chr3L_5_2985001 chr3L_2985001 RAL-727 1127 chr3L 3011910 3011941 chr3L 3011988 3012019 8 78 2.0 5.0 3.5 1.8 109 chr3L 3011910 intergenic FMRFaR + chr3L 3011964 intergenic FMRFaR + chr3L 3012019 intergenic FMRFaR + chr3L_8_3010001 chr3L_3010001 RAL-727 1128 chr3L 3040325 3040353 chr3L 3042114 3042142 S-element 11 1789 9.0 7.0 8.0 1.2 1817 chr3L 3040325 3` UTR CG2162 + chr3L 3041234 intergenic not near genes chr3L 3042142 intergenic Jafrac2 + chr3L_11_3040001 chr3L_3040001 RAL-727 1129 chr3L 3051743 3051757 chr3L 3051985 3051999 pogo 8 241 14.5 8.0 11.2 0.7 256 chr3L 3051743 3` UTR CG32485 + chr3L 3051871 intergenic CG32485 + chr3L 3051999 intergenic CG32485 + chr3L_8_3050001 chr3L_3050001 RAL-727 1130 chr3L 3259657 3259821 chr3L 3259740 3259921 9 83 0.5 0.5 0.5 6.0 264 chr3L 3259657 intron ckd + chr3L 3259789 intron ckd + chr3L 3259921 intron ckd + chr3L_9_3255001 chr3L_3255001 RAL-727 1131 chr3L 3281440 3281467 chr3L 3281936 3281963 Doc 18 491 3.5 11.0 7.2 2.2 523 chr3L 3281440 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281963 intron CG12017 + chr3L_18_3280001 chr3L_3280001 RAL-727 1132 chr3L 3281468 3281474 chr3L 3281934 3281970 Doc 5 490 2.0 11.0 6.5 0.7 502 chr3L 3281468 intron CG12017 + chr3L 3281719 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-727 1133 chr3L 3294138 3294147 chr3L 3294229 3294238 7 91 4.5 3.5 4.0 1.4 100 chr3L 3294138 intron CG12009 + chr3L 3294188 intron CG12009 + chr3L 3294238 intron CG12009 + chr3L_7_3290001 chr3L_3290001 RAL-727 1134 chr3L 3317547 3317565 chr3L 3317611 3317644 6 76 2.0 8.0 5.0 1.0 97 chr3L 3317547 intergenic Drsl5 +,PIG-C - chr3L 3317596 intergenic PIG-C -,Drsl5 + chr3L 3317644 intergenic PIG-C -,Drsl5 + chr3L_6_3315001 chr3L_3315001 RAL-727 1135 chr3L 3436289 3436315 chr3L 3436368 3436394 12 79 3.5 4.0 3.8 2.5 105 chr3L 3436289 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436394 intron eIF5B - chr3L_12_3435001 chr3L_3435001 RAL-727 1136 chr3L 3470159 3470189 chr3L 3470235 3470265 7 75 1.5 2.0 1.8 2.5 106 chr3L 3470159 intron CG14971 - chr3L 3470212 intron CG14971 - chr3L 3470265 intron CG14971 - chr3L_7_3470001 chr3L_3470001 RAL-727 1137 chr3L 3475077 3475100 chr3L 3475521 3475543 jockey 7 442 2.5 5.5 4.0 1.4 466 chr3L 3475077 intron CG42324 + chr3L 3475310 intron CG42324 + chr3L 3475543 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-727 1138 chr3L 3484374 3484405 chr3L 3484550 3484581 15 176 0.5 7.5 4.0 3.0 207 chr3L 3484374 intron,exon CG42324 +,CG43074 - chr3L 3484478 intron,exon CG42324 +,CG43074 - chr3L 3484581 intron,exon CG42324 +,CG43074 - chr3L_15_3480001 chr3L_3480001 RAL-727 1139 chr3L 3544392 3544416 chr3L 3544502 3544526 16 110 0.0 4.5 2.2 5.0 134 chr3L 3544392 intron Eip63E + chr3L 3544459 intron Eip63E + chr3L 3544526 intron Eip63E + chr3L_16_3540001 chr3L_3540001 RAL-727 1140 chr3L 3573167 3573193 chr3L 3573250 3573276 17 83 5.0 7.0 6.0 2.4 109 chr3L 3573167 intron Eip63E + chr3L 3573222 intron Eip63E + chr3L 3573276 intron Eip63E + chr3L_17_3570001 chr3L_3570001 RAL-727 1141 chr3L 3601296 3601331 chr3L 3606607 3606639 copia 21 5308 3.0 5.0 4.0 4.2 5343 chr3L 3601296 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_21_3600001 chr3L_3600001 RAL-727 1142 chr3L 3642164 3642189 chr3L 3642260 3642295 18 105 1.0 3.5 2.2 5.6 131 chr3L 3642164 intron dar1 + chr3L 3642230 intron dar1 + chr3L 3642295 intron dar1 + chr3L_18_3640001 chr3L_3640001 RAL-727 1143 chr3L 3695494 3695529 chr3L 3695572 3695575 10 74 2.5 0.0 1.2 4.5 81 chr3L 3695494 intergenic not near genes chr3L 3695534 intergenic not near genes chr3L 3695575 intergenic not near genes chr3L_10_3695001 chr3L_3695001 RAL-727 1144 chr3L 3709448 3709467 chr3L 3709530 3709549 7 82 0.5 0.0 0.2 5.8 101 chr3L 3709448 intergenic CR45675 + chr3L 3709498 intergenic not near genes chr3L 3709549 intergenic not near genes chr3L_7_3705001 chr3L_3705001 RAL-727 1145 chr3L 3766739 3766761 chr3L 3766825 3766847 14 86 3.5 0.5 2.0 4.7 108 chr3L 3766739 intron CG32264 - chr3L 3766793 intron CG32264 - chr3L 3766847 intron CG32264 - chr3L_14_3765001 chr3L_3765001 RAL-727 1146 chr3L 3783276 3783288 chr3L 3783351 3783365 5 76 10.5 2.0 6.2 0.7 89 chr3L 3783276 intron CG32264 - chr3L 3783320 intron CG32264 - chr3L 3783365 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-727 1147 chr3L 3795591 3795626 chr3L 3795668 3795703 15 77 6.0 4.5 5.2 2.4 112 chr3L 3795591 intron CG32264 - chr3L 3795647 intron CG32264 - chr3L 3795703 intron CG32264 - chr3L_15_3795001 chr3L_3795001 RAL-727 1148 chr3L 3797239 3797264 chr3L 3797322 3797347 14 83 0.5 3.5 2.0 4.7 108 chr3L 3797239 intron CG32264 - chr3L 3797293 intron CG32264 - chr3L 3797347 intron CG32264 - chr3L_14_3795001 chr3L_3795001 RAL-727 1149 chr3L 3889128 3889147 chr3L 3889211 3889230 6 83 5.5 3.5 4.5 1.1 102 chr3L 3889128 intergenic not near genes chr3L 3889179 intergenic not near genes chr3L 3889230 intergenic not near genes chr3L_6_3885001 chr3L_3885001 RAL-727 1150 chr3L 3926029 3926041 chr3L 3926122 3926133 9 93 4.0 2.5 3.2 2.1 104 chr3L 3926029 intron Eip63F-1 - chr3L 3926081 intron Eip63F-1 - chr3L 3926133 intron Eip63F-1 - chr3L_9_3925001 chr3L_3925001 RAL-727 1151 chr3L 3935826 3935848 chr3L 3935904 3935926 14 78 3.0 10.5 6.8 1.8 100 chr3L 3935826 5` UTR Eip63F-2 + chr3L 3935876 5` UTR Eip63F-2 + chr3L 3935926 5` UTR Eip63F-2 + chr3L_14_3935001 chr3L_3935001 RAL-727 1152 chr3L 3946201 3946224 chr3L 3946276 3946301 7 72 5.0 4.0 4.5 1.3 100 chr3L 3946201 3` UTR CG14982 + chr3L 3946251 3` UTR CG14982 + chr3L 3946301 3` UTR CG14982 + chr3L_7_3945001 chr3L_3945001 RAL-727 1153 chr3L 3968045 3968059 chr3L 3968124 3968138 7 79 1.5 5.0 3.2 1.7 93 chr3L 3968045 intergenic not near genes chr3L 3968092 intergenic not near genes chr3L 3968138 intergenic not near genes chr3L_7_3965001 chr3L_3965001 RAL-727 1154 chr3L 4099481 4099492 chr3L 4099562 4099573 4 81 6.5 3.0 4.8 0.7 92 chr3L 4099481 intron CG14995 - chr3L 4099527 intron CG14995 - chr3L 4099573 intron CG14995 - chr3L_4_4095001 chr3L_4095001 RAL-727 1155 chr3L 4146813 4146840 chr3L 4146895 4146922 16 82 0.0 5.0 2.5 4.6 109 chr3L 4146813 intergenic not near genes chr3L 4146868 intergenic not near genes chr3L 4146922 intergenic not near genes chr3L_16_4145001 chr3L_4145001 RAL-727 1156 chr3L 4231157 4231187 chr3L 4231243 4231280 23 91 5.5 5.5 5.5 3.5 123 chr3L 4231157 intron ImpL2 - chr3L 4231218 intron ImpL2 - chr3L 4231280 intron ImpL2 - chr3L_23_4230001 chr3L_4230001 RAL-727 1157 chr3L 4328738 4328765 chr3L 4336236 4336260 412 21 7497 6.5 11.0 8.8 2.1 7522 chr3L 4328738 intron Cip4 - chr3L 4332499 intron Cip4 - chr3L 4336260 intron Cip4 - chr3L_21_4330001 chr3L_4330001 RAL-727 1158 chr3L 4572429 4572448 chr3L 4572592 4572611 11 163 2.5 2.5 2.5 3.1 182 chr3L 4572429 intron CG42540 + chr3L 4572520 intron CG42540 + chr3L 4572611 intron CG42540 + chr3L_11_4570001 chr3L_4570001 RAL-727 1159 chr3L 4573732 4573759 chr3L 4573818 4573845 13 86 1.0 5.5 3.2 3.1 113 chr3L 4573732 intron CG42540 + chr3L 4573788 intron CG42540 + chr3L 4573845 intron CG42540 + chr3L_13_4570001 chr3L_4570001 RAL-727 1160 chr3L 4617102 4617135 chr3L 4617180 4617213 14 76 5.0 8.5 6.8 1.8 111 chr3L 4617102 intron Src64B - chr3L 4617158 intron Src64B - chr3L 4617213 intron Src64B - chr3L_14_4615001 chr3L_4615001 RAL-727 1161 chr3L 4676037 4676051 chr3L 4676118 4676132 5 81 2.0 0.5 1.2 2.3 95 chr3L 4676037 intron axo - chr3L 4676084 intron axo - chr3L 4676132 intron axo - chr3L_5_4675001 chr3L_4675001 RAL-727 1162 chr3L 4782110 4782127 chr3L 4782210 4782227 6 99 4.5 5.0 4.8 1.0 117 chr3L 4782110 intron RhoGEF64C + chr3L 4782168 intron RhoGEF64C + chr3L 4782227 intron RhoGEF64C + chr3L_6_4780001 chr3L_4780001 RAL-727 1163 chr3L 4837886 4837925 chr3L 4837965 4838003 17 78 2.0 5.5 3.8 3.5 117 chr3L 4837886 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838003 3` UTR CG13707 - chr3L_17_4835001 chr3L_4835001 RAL-727 1164 chr3L 4839104 4839124 chr3L 4839208 4839210 5 100 3.0 0.0 1.5 2.0 106 chr3L 4839104 intron CG13707 - chr3L 4839157 intron CG13707 - chr3L 4839210 intron CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-727 1165 chr3L 4858303 4858336 chr3L 4858391 4858426 15 85 2.5 3.5 3.0 3.8 123 chr3L 4858303 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_15_4855001 chr3L_4855001 RAL-727 1166 chr3L 4880586 4880619 chr3L 4880672 4880698 17 86 2.0 4.5 3.2 4.0 112 chr3L 4880586 intron CG17150 + chr3L 4880642 intron CG17150 + chr3L 4880698 intron CG17150 + chr3L_17_4880001 chr3L_4880001 RAL-727 1167 chr3L 4901126 4901148 chr3L 4907316 4907324 diver 7 6187 5.0 1.0 3.0 1.8 6198 chr3L 4901126 intergenic CG13704 + chr3L 4904225 intergenic not near genes chr3L 4907324 intergenic not near genes chr3L_7_4900001 chr3L_4900001 RAL-727 1168 chr3L 4907979 4907999 chr3L 4908052 4908075 5 75 2.0 5.0 3.5 1.1 96 chr3L 4907979 intergenic not near genes chr3L 4908027 intergenic not near genes chr3L 4908075 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-727 1169 chr3L 4925735 4925763 chr3L 4925813 4925840 7 77 5.5 5.0 5.2 1.1 105 chr3L 4925735 intergenic not near genes chr3L 4925788 intergenic not near genes chr3L 4925840 intergenic not near genes chr3L_7_4925001 chr3L_4925001 RAL-727 1170 chr3L 4989179 4989192 chr3L 4989269 4989282 4 90 0.0 3.5 1.8 1.4 103 chr3L 4989179 intron Con - chr3L 4989230 intron Con - chr3L 4989282 intron Con - chr3L_4_4985001 chr3L_4985001 RAL-727 1171 chr3L 5015684 5015708 chr3L 5015789 5015813 6 105 2.0 4.0 3.0 1.5 129 chr3L 5015684 intron Con - chr3L 5015748 intron Con - chr3L 5015813 intron Con - chr3L_6_5015001 chr3L_5015001 RAL-727 1172 chr3L 5034166 5034190 chr3L 5043313 5043342 roo 6 9151 3.5 1.5 2.5 1.7 9176 chr3L 5034166 intron Con - chr3L 5038754 intron Con - chr3L 5043342 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-727 1173 chr3L 5045455 5045483 chr3L 5050236 5050264 Doc 13 4781 9.0 5.5 7.2 1.6 4809 chr3L 5045455 intron Con - chr3L 5047860 intron Con - chr3L 5050264 intron Con - chr3L_13_5045001 chr3L_5045001 RAL-727 1174 chr3L 5101206 5101231 chr3L 5101286 5101310 8 80 2.0 5.5 3.8 1.7 104 chr3L 5101206 intergenic not near genes chr3L 5101258 intergenic not near genes chr3L 5101310 intergenic not near genes chr3L_8_5100001 chr3L_5100001 RAL-727 1175 chr3L 5104488 5104511 chr3L 5124622 5124645 12 20133 0.5 7.0 3.8 2.5 20157 chr3L 5104488 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124645 intergenic not near genes chr3L_12_5110001 chr3L_5110001 RAL-727 1176 chr3L 5130928 5130953 chr3L 5131031 5131056 13 102 4.5 3.0 3.8 2.7 128 chr3L 5130928 intergenic not near genes chr3L 5130992 intergenic not near genes chr3L 5131056 intergenic CG15212 + chr3L_13_5130001 chr3L_5130001 RAL-727 1177 chr3L 5220826 5220861 chr3L 5220921 5220956 19 95 2.0 3.0 2.5 5.4 130 chr3L 5220826 intron shep - chr3L 5220891 intron shep - chr3L 5220956 intron shep - chr3L_19_5220001 chr3L_5220001 RAL-727 1178 chr3L 5261165 5261177 chr3L 5261244 5261256 9 79 6.0 5.5 5.8 1.3 91 chr3L 5261165 intron shep - chr3L 5261210 intron shep - chr3L 5261256 intron shep - chr3L_9_5260001 chr3L_5260001 RAL-727 1179 chr3L 5265351 5265377 chr3L 5265459 5265476 11 101 5.5 10.5 8.0 1.2 125 chr3L 5265351 intron shep - chr3L 5265414 intron shep - chr3L 5265476 intron shep - chr3L_11_5265001 chr3L_5265001 RAL-727 1180 chr3L 5327463 5327471 chr3L 5327548 5327556 7 85 6.5 5.0 5.8 1.0 93 chr3L 5327463 intergenic not near genes chr3L 5327510 intergenic not near genes chr3L 5327556 intergenic not near genes chr3L_7_5325001 chr3L_5325001 RAL-727 1181 chr3L 5351104 5351125 chr3L 5351189 5351190 9 83 6.0 3.5 4.8 1.6 86 chr3L 5351104 intron lama - chr3L 5351147 intron lama - chr3L 5351190 intron lama - chr3L_9_5350001 chr3L_5350001 RAL-727 1182 chr3L 5356395 5356406 chr3L 5356475 5356486 5 80 6.0 0.0 3.0 1.2 91 chr3L 5356395 intergenic Klp64D -,lama - chr3L 5356440 intergenic Klp64D - chr3L 5356486 intergenic Klp64D - chr3L_5_5355001 chr3L_5355001 RAL-727 1183 chr3L 5381275 5381305 chr3L 5381411 5381441 17 135 0.5 3.0 1.8 6.1 166 chr3L 5381275 intron Ir64a - chr3L 5381358 intron Ir64a - chr3L 5381441 intron Ir64a - chr3L_17_5380001 chr3L_5380001 RAL-727 1184 chr3L 5384313 5384326 chr3L 5384393 5384404 4 78 6.0 6.0 6.0 0.6 91 chr3L 5384313 intergenic not near genes chr3L 5384358 intergenic not near genes chr3L 5384404 intergenic not near genes chr3L_4_5380001 chr3L_5380001 RAL-727 1185 chr3L 5388204 5388232 chr3L 5388526 5388556 13 322 8.0 4.5 6.2 1.8 352 chr3L 5388204 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388556 intergenic not near genes chr3L_13_5385001 chr3L_5385001 RAL-727 1186 chr3L 5490387 5490420 chr3L 5490533 5490566 13 145 2.0 1.5 1.8 4.6 179 chr3L 5490387 intergenic not near genes chr3L 5490476 intergenic not near genes chr3L 5490566 intergenic not near genes chr3L_13_5490001 chr3L_5490001 RAL-727 1187 chr3L 5498414 5498432 chr3L 5498491 5498509 9 73 0.5 12.5 6.5 1.2 95 chr3L 5498414 exon blanks - chr3L 5498462 exon blanks - chr3L 5498509 exon blanks - chr3L_9_5495001 chr3L_5495001 RAL-727 1188 chr3L 5504563 5504570 chr3L 5504641 5504648 6 78 7.5 0.5 4.0 1.2 85 chr3L 5504563 intron CG34342 - chr3L 5504606 intron CG34342 - chr3L 5504648 intron CG34342 - chr3L_6_5500001 chr3L_5500001 RAL-727 1189 chr3L 5522002 5522038 chr3L 5522270 5522306 13 265 6.0 3.5 4.8 2.2 304 chr3L 5522002 intron Lkr - chr3L 5522154 intron Lkr - chr3L 5522306 intron Lkr - chr3L_13_5520001 chr3L_5520001 RAL-727 1190 chr3L 5526965 5527206 chr3L 5527051 5527311 17 92 3.5 0.0 1.8 6.1 346 chr3L 5526965 intron Lkr - chr3L 5527138 intron Lkr - chr3L 5527311 intron Lkr - chr3L_17_5525001 chr3L_5525001 RAL-727 1191 chr3L 5537722 5537752 chr3L 5538064 5538094 jockey 5 339 4.5 7.5 6.0 0.7 372 chr3L 5537722 intergenic not near genes chr3L 5537908 intergenic not near genes chr3L 5538094 intergenic CG10625 - chr3L_5_5535001 chr3L_5535001 RAL-727 1192 chr3L 5581466 5581497 chr3L 5581552 5581581 11 85 2.5 5.0 3.8 2.3 115 chr3L 5581466 intergenic not near genes chr3L 5581524 intergenic not near genes chr3L 5581581 intergenic not near genes chr3L_11_5580001 chr3L_5580001 RAL-727 1193 chr3L 5667627 5667640 chr3L 5667707 5667720 6 80 5.0 0.0 2.5 1.7 93 chr3L 5667627 intron sif + chr3L 5667674 intron sif + chr3L 5667720 intron sif + chr3L_6_5665001 chr3L_5665001 RAL-727 1194 chr3L 5727176 5727196 chr3L 5727649 5727668 7 468 4.0 3.5 3.8 1.5 492 chr3L 5727176 intron sif + chr3L 5727422 intron sif + chr3L 5727668 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-727 1195 chr3L 5743252 5743286 chr3L 5743341 5743375 16 88 5.5 6.0 5.8 2.4 123 chr3L 5743252 intron sif + chr3L 5743314 intron sif + chr3L 5743375 intron sif + chr3L_16_5740001 chr3L_5740001 RAL-727 1196 chr3L 5872862 5873006 chr3L 5874951 5875069 4 2081 31.0 15.5 23.2 0.2 2207 chr3L 5872862 exon CG5568 + chr3L 5873966 exon CG18586 + chr3L 5875069 exon CG18586 + chr3L_4_5870001 chr3L_5870001 RAL-727 1197 chr3L 5910040 5910064 chr3L 5910281 5910305 pogo 12 241 4.5 12.0 8.2 1.3 265 chr3L 5910040 intron CG13288 + chr3L 5910172 intron CG13288 + chr3L 5910305 intron CG13288 + chr3L_12_5910001 chr3L_5910001 RAL-727 1198 chr3L 5926316 5926338 chr3L 5926506 5926517 BS 10 185 9.5 8.0 8.8 1.0 201 chr3L 5926316 intron Vap-33B + chr3L 5926416 intron Vap-33B + chr3L 5926517 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-727 1199 chr3L 5926342 5926351 chr3L 5926505 5926514 BS 8 175 5.5 7.5 6.5 1.1 172 chr3L 5926342 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926514 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-727 1200 chr3L 5949418 5949445 chr3L 5949508 5949536 7 87 0.0 3.5 1.8 2.5 118 chr3L 5949418 intron CG33993 - chr3L 5949477 intron CG33993 - chr3L 5949536 intron CG33993 - chr3L_7_5945001 chr3L_5945001 RAL-727 1201 chr3L 5963777 5963804 chr3L 5963865 5963892 10 87 2.5 4.0 3.2 2.4 115 chr3L 5963777 intergenic not near genes chr3L 5963834 intergenic not near genes chr3L 5963892 intergenic not near genes chr3L_10_5960001 chr3L_5960001 RAL-727 1202 chr3L 5992591 5992619 chr3L 5992693 5992721 14 102 4.5 5.0 4.8 2.4 130 chr3L 5992591 intergenic not near genes chr3L 5992656 intergenic not near genes chr3L 5992721 intergenic not near genes chr3L_14_5990001 chr3L_5990001 RAL-727 1203 chr3L 6001679 6001717 chr3L 6004378 6004417 jockey 19 2698 4.0 2.0 3.0 4.8 2738 chr3L 6001679 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_19_6000001 chr3L_6000001 RAL-727 1204 chr3L 6040368 6040384 chr3L 6042724 6042740 Doc 5 2356 7.0 4.0 5.5 0.8 2372 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041554 intergenic not near genes chr3L 6042740 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-727 1205 chr3L 6052139 6052152 chr3L 6052225 6052238 7 85 0.0 4.0 2.0 2.3 99 chr3L 6052139 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052238 intergenic Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-727 1206 chr3L 6116695 6116727 chr3L 6116779 6116811 18 83 2.5 2.0 2.2 5.6 116 chr3L 6116695 intron Ets65A + chr3L 6116753 intron Ets65A + chr3L 6116811 intron Ets65A + chr3L_18_6115001 chr3L_6115001 RAL-727 1207 chr3L 6159943 6159952 chr3L 6160023 6160032 8 80 6.5 0.0 3.2 1.9 89 chr3L 6159943 intergenic not near genes chr3L 6159988 intergenic not near genes chr3L 6160032 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-727 1208 chr3L 6220921 6220947 chr3L 6230064 6230067 roo 19 9148 10.5 6.5 8.5 2.0 9146 chr3L 6220921 5` UTR pncr008:3L + chr3L 6225494 intergenic not near genes chr3L 6230067 intergenic not near genes chr3L_19_6225001 chr3L_6225001 RAL-727 1209 chr3L 6231152 6231369 chr3L 6231233 6231455 17 81 2.5 1.0 1.8 6.1 303 chr3L 6231152 intergenic not near genes chr3L 6231304 intergenic CG13299 - chr3L 6231455 intergenic CG13299 - chr3L_17_6230001 chr3L_6230001 RAL-727 1210 chr3L 6259387 6259401 chr3L 6261192 6261206 11 1805 31.5 24.5 28.0 0.4 1819 chr3L 6259387 3` UTR ImpL3 - chr3L 6260296 exon ImpL3 - chr3L 6261206 intron ImpL3 - chr3L_11_6260001 chr3L_6260001 RAL-727 1211 chr3L 6259253 6259269 chr3L 6261298 6261329 17 2047 41.0 39.0 40.0 0.4 2076 chr3L 6259253 3` UTR ImpL3 - chr3L 6260291 exon ImpL3 - chr3L 6261329 intron ImpL3 - chr3L_17_6260001 chr3L_6260001 RAL-727 1212 chr3L 6278213 6278229 chr3L 6278289 6278294 4 73 9.5 0.0 4.8 0.7 81 chr3L 6278213 intergenic not near genes chr3L 6278254 intergenic not near genes chr3L 6278294 intergenic not near genes chr3L_4_6275001 chr3L_6275001 RAL-727 1213 chr3L 6332243 6332264 chr3L 6332470 6332487 4 226 1.0 1.0 1.0 2.0 244 chr3L 6332243 intron CG13300 - chr3L 6332365 intron CG13300 - chr3L 6332487 exon CG13300 - chr3L_4_6330001 chr3L_6330001 RAL-727 1214 chr3L 6335016 6335037 chr3L 6335485 6335506 297 4 470 4.0 7.5 5.8 0.6 490 chr3L 6335016 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335506 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-727 1215 chr3L 6353382 6353402 chr3L 6353455 6353463 4 74 3.0 2.5 2.8 1.1 81 chr3L 6353382 intergenic not near genes chr3L 6353422 intergenic not near genes chr3L 6353463 intergenic not near genes chr3L_4_6350001 chr3L_6350001 RAL-727 1216 chr3L 6367251 6367269 chr3L 6367341 6367357 5 87 1.5 7.0 4.2 1.0 106 chr3L 6367251 intergenic not near genes chr3L 6367304 intergenic not near genes chr3L 6367357 intergenic not near genes chr3L_5_6365001 chr3L_6365001 RAL-727 1217 chr3L 6405658 6405691 chr3L 6432122 6432155 roo 7 26464 3.0 5.5 4.2 1.3 26497 chr3L 6405658 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432155 intron CG42747 + chr3L_7_6415001 chr3L_6415001 RAL-727 1218 chr3L 6528844 6528875 chr3L 6528979 6528999 7 132 3.0 1.0 2.0 2.3 155 chr3L 6528844 intron sfl + chr3L 6528922 intron sfl + chr3L 6528999 intron sfl + chr3L_7_6525001 chr3L_6525001 RAL-727 1219 chr3L 6562836 6562868 chr3L 6562916 6562947 12 79 2.5 5.0 3.8 2.5 111 chr3L 6562836 intron CG18769 + chr3L 6562892 intron CG18769 + chr3L 6562947 intron CG18769 + chr3L_12_6560001 chr3L_6560001 RAL-727 1220 chr3L 6582463 6582495 chr3L 6582564 6582596 7 102 2.0 2.0 2.0 2.3 133 chr3L 6582463 intron,intron CG18769 +,jv - chr3L 6582530 intron,intron CG18769 +,jv - chr3L 6582596 intron,intron CG18769 +,jv - chr3L_7_6580001 chr3L_6580001 RAL-727 1221 chr3L 6637114 6637143 chr3L 6637193 6637219 10 76 5.5 2.5 4.0 2.0 105 chr3L 6637114 intergenic not near genes chr3L 6637166 intergenic not near genes chr3L 6637219 intergenic not near genes chr3L_10_6635001 chr3L_6635001 RAL-727 1222 chr3L 6642868 6642889 chr3L 6642948 6642969 10 79 0.5 0.0 0.2 8.3 101 chr3L 6642868 intergenic CR45239 + chr3L 6642918 intergenic CR45239 + chr3L 6642969 intergenic CR45239 + chr3L_10_6640001 chr3L_6640001 RAL-727 1223 chr3L 6652078 6652109 chr3L 6652156 6652187 18 78 4.5 6.0 5.2 2.9 109 chr3L 6652078 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652187 intergenic not near genes chr3L_18_6650001 chr3L_6650001 RAL-727 1224 chr3L 6722100 6722106 chr3L 6722177 6722183 4 77 4.5 8.5 6.5 0.5 83 chr3L 6722100 intergenic not near genes chr3L 6722142 intergenic not near genes chr3L 6722183 intergenic not near genes chr3L_4_6720001 chr3L_6720001 RAL-727 1225 chr3L 6781126 6781143 chr3L 6783139 6783156 Doc 5 2013 4.5 0.0 2.2 1.6 2030 chr3L 6781126 intergenic not near genes chr3L 6782141 intergenic not near genes chr3L 6783156 intergenic not near genes chr3L_5_6780001 chr3L_6780001 RAL-727 1226 chr3L 6844369 6844386 chr3L 6844514 6844532 5 145 1.5 4.5 3.0 1.2 163 chr3L 6844369 intergenic not near genes chr3L 6844450 intergenic not near genes chr3L 6844532 intergenic not near genes chr3L_5_6840001 chr3L_6840001 RAL-727 1227 chr3L 6887518 6887548 chr3L 6895010 6895040 roo 8 7492 7.0 3.5 5.2 1.3 7522 chr3L 6887518 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895040 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-727 1228 chr3L 7086840 7086849 chr3L 7086919 7086928 4 79 3.5 0.0 1.8 1.4 88 chr3L 7086840 intergenic Cpr65Ea - chr3L 7086884 intergenic Cpr65Ea - chr3L 7086928 intergenic Cpr65Ea - chr3L_4_7085001 chr3L_7085001 RAL-727 1229 chr3L 7112583 7112615 chr3L 7112670 7112702 18 86 4.0 3.5 3.8 3.8 119 chr3L 7112583 intron form3 + chr3L 7112642 intron form3 + chr3L 7112702 intron form3 + chr3L_18_7110001 chr3L_7110001 RAL-727 1230 chr3L 7150875 7150902 chr3L 7150951 7150978 18 75 3.0 3.0 3.0 4.5 103 chr3L 7150875 intron corn - chr3L 7150926 intron corn - chr3L 7150978 intron corn - chr3L_18_7150001 chr3L_7150001 RAL-727 1231 chr3L 7187400 7187413 chr3L 7187482 7187495 6 82 0.5 4.5 2.5 1.7 95 chr3L 7187400 intron Dscam2 - chr3L 7187448 intron Dscam2 - chr3L 7187495 intron Dscam2 - chr3L_6_7185001 chr3L_7185001 RAL-727 1232 chr3L 7198640 7198655 chr3L 7198732 7198756 4 96 2.0 0.5 1.2 1.8 116 chr3L 7198640 intergenic not near genes chr3L 7198698 intergenic not near genes chr3L 7198756 intergenic not near genes chr3L_4_7195001 chr3L_7195001 RAL-727 1233 chr3L 7285454 7285471 chr3L 7285532 7285544 6 77 5.0 4.5 4.8 1.0 90 chr3L 7285454 intron unc-13-4A - chr3L 7285499 intron unc-13-4A - chr3L 7285544 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-727 1234 chr3L 7355716 7355731 chr3L 7363623 7363644 7 7909 28.5 23.0 25.8 0.3 7928 chr3L 7355716 exon CTCF - chr3L 7359680 exon pst - chr3L 7363644 exon Sec63 + chr3L_7_7355001 chr3L_7355001 RAL-727 1235 chr3L 7439398 7439407 chr3L 7440779 7440788 5 1381 22.5 23.0 22.8 0.2 1390 chr3L 7439398 intron,exon CG42458 +,sphinx1 - chr3L 7440093 intron,exon CG42458 +,sphinx2 - chr3L 7440788 intron CG42458 + chr3L_5_7440001 chr3L_7440001 RAL-727 1236 chr3L 7444023 7444048 chr3L 7444121 7444147 7 99 3.0 0.0 1.5 2.8 124 chr3L 7444023 intron CG42458 + chr3L 7444085 intron CG42458 + chr3L 7444147 intron CG42458 + chr3L_7_7440001 chr3L_7440001 RAL-727 1237 chr3L 7449438 7449456 chr3L 7449518 7449536 6 79 0.0 3.0 1.5 2.4 98 chr3L 7449438 intron CG42458 + chr3L 7449487 intron CG42458 + chr3L 7449536 intron CG42458 + chr3L_6_7445001 chr3L_7445001 RAL-727 1238 chr3L 7488869 7488892 chr3L 7488950 7488973 6 81 2.0 4.0 3.0 1.5 104 chr3L 7488869 intergenic not near genes chr3L 7488921 intergenic not near genes chr3L 7488973 intergenic not near genes chr3L_6_7485001 chr3L_7485001 RAL-727 1239 chr3L 7490504 7490524 chr3L 7490581 7490601 5 70 7.0 8.0 7.5 0.6 97 chr3L 7490504 intergenic not near genes chr3L 7490552 intergenic not near genes chr3L 7490601 intergenic not near genes chr3L_5_7490001 chr3L_7490001 RAL-727 1240 chr3L 7498735 7498746 chr3L 7503526 7503537 F-element 4 4791 3.5 0.5 2.0 1.3 4802 chr3L 7498735 5` UTR CG8539 - chr3L 7501136 intergenic not near genes chr3L 7503537 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-727 1241 chr3L 7574850 7574857 chr3L 7574927 7574932 7 77 0.5 0.0 0.2 5.8 82 chr3L 7574850 intergenic not near genes chr3L 7574891 intergenic not near genes chr3L 7574932 intergenic not near genes chr3L_7_7570001 chr3L_7570001 RAL-727 1242 chr3L 7576223 7576234 chr3L 7576301 7576322 6 86 7.5 7.0 7.2 0.7 99 chr3L 7576223 intergenic not near genes chr3L 7576272 intergenic not near genes chr3L 7576322 intergenic not near genes chr3L_6_7575001 chr3L_7575001 RAL-727 1243 chr3L 7581647 7581651 chr3L 7581712 7581735 4 79 4.5 5.0 4.8 0.7 88 chr3L 7581647 intergenic not near genes chr3L 7581691 intergenic not near genes chr3L 7581735 intergenic not near genes chr3L_4_7580001 chr3L_7580001 RAL-727 1244 chr3L 7769314 7769321 chr3L 7769404 7769414 6 92 0.0 4.5 2.2 1.9 100 chr3L 7769314 intron Clk - chr3L 7769364 intron Clk - chr3L 7769414 intron Clk - chr3L_6_7765001 chr3L_7765001 RAL-727 1245 chr3L 7793716 7793745 chr3L 7800768 7800797 297 17 7051 8.0 8.0 8.0 1.9 7081 chr3L 7793716 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_17_7795001 chr3L_7795001 RAL-727 1246 chr3L 7876100 7876130 chr3L 7876179 7876209 7 79 0.0 0.0 0.0 7.0 109 chr3L 7876100 intron CG32365 + chr3L 7876154 intron CG32365 + chr3L 7876209 intron CG32365 + chr3L_7_7875001 chr3L_7875001 RAL-727 1247 chr3L 7886518 7886546 chr3L 7889036 7889064 Stalker4 12 2518 0.5 4.5 2.5 3.4 2546 chr3L 7886518 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_12_7885001 chr3L_7885001 RAL-727 1248 chr3L 7916831 7916861 chr3L 7926002 7926032 roo 7 9171 5.5 3.0 4.2 1.3 9201 chr3L 7916831 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926032 3` UTR syd - chr3L_7_7920001 chr3L_7920001 RAL-727 1249 chr3L 7969860 7969880 chr3L 7969949 7969955 7 86 8.0 8.0 8.0 0.8 95 chr3L 7969860 intergenic not near genes chr3L 7969908 intergenic not near genes chr3L 7969955 intergenic not near genes chr3L_7_7965001 chr3L_7965001 RAL-727 1250 chr3L 7985377 7985400 chr3L 7987706 7987727 NOF 10 2329 7.0 8.0 7.5 1.2 2350 chr3L 7985377 intron nmo + chr3L 7986552 intron nmo + chr3L 7987727 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-727 1251 chr3L 8019701 8019734 chr3L 8024113 8024147 NOF 7 4412 5.0 3.5 4.2 1.3 4446 chr3L 8019701 intron nmo + chr3L 8021924 intron nmo + chr3L 8024147 intron nmo + chr3L_7_8020001 chr3L_8020001 RAL-727 1252 chr3L 8026598 8026628 chr3L 8026676 8026706 13 78 3.0 0.5 1.8 4.6 108 chr3L 8026598 intron nmo + chr3L 8026652 intron nmo + chr3L 8026706 intron nmo + chr3L_13_8025001 chr3L_8025001 RAL-727 1253 chr3L 8062854 8062973 chr3L 8062932 8063103 7 119 4.5 5.0 4.8 1.2 249 chr3L 8062854 intergenic not near genes chr3L 8062978 intergenic not near genes chr3L 8063103 intergenic not near genes chr3L_7_8060001 chr3L_8060001 RAL-727 1254 chr3L 8076679 8076716 chr3L 8076762 8076782 28 81 9.5 7.5 8.5 2.9 103 chr3L 8076679 intron Ect4 + chr3L 8076730 intron Ect4 + chr3L 8076782 intron Ect4 + chr3L_28_8075001 chr3L_8075001 RAL-727 1255 chr3L 8081286 8081306 chr3L 8081389 8081409 13 103 2.0 5.5 3.8 2.7 123 chr3L 8081286 intron Ect4 + chr3L 8081348 intron Ect4 + chr3L 8081409 intron Ect4 + chr3L_13_8080001 chr3L_8080001 RAL-727 1256 chr3L 8178519 8178531 chr3L 8178596 8178608 8 77 1.0 0.0 0.5 5.3 89 chr3L 8178519 intergenic Nmt -,mthl7 - chr3L 8178564 intergenic mthl7 -,Nmt - chr3L 8178608 intergenic mthl7 -,Nmt - chr3L_8_8175001 chr3L_8175001 RAL-727 1257 chr3L 8204440 8204456 chr3L 8204569 8204571 5 125 5.5 2.0 3.8 1.0 131 chr3L 8204440 intergenic not near genes chr3L 8204506 intergenic not near genes chr3L 8204571 intergenic not near genes chr3L_5_8200001 chr3L_8200001 RAL-727 1258 chr3L 8248329 8248344 chr3L 8248405 8248413 7 83 2.5 6.0 4.2 1.3 84 chr3L 8248329 intron Dscam4 + chr3L 8248371 intron Dscam4 + chr3L 8248413 intron Dscam4 + chr3L_7_8245001 chr3L_8245001 RAL-727 1259 chr3L 8319438 8319475 chr3L 8319514 8319551 16 72 1.5 7.0 4.2 3.1 113 chr3L 8319438 intergenic CG43059 - chr3L 8319494 intergenic not near genes chr3L 8319551 intergenic not near genes chr3L_16_8315001 chr3L_8315001 RAL-727 1260 chr3L 8498300 8498327 chr3L 8505767 8505794 blood 7 7466 9.5 7.5 8.5 0.7 7494 chr3L 8498300 intron CG43163 - chr3L 8502047 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_7_8500001 chr3L_8500001 RAL-727 1261 chr3L 8551739 8551773 chr3L 8551822 8551856 15 82 5.5 3.0 4.2 2.9 117 chr3L 8551739 intron rhea + chr3L 8551798 intron rhea + chr3L 8551856 intron rhea + chr3L_15_8550001 chr3L_8550001 RAL-727 1262 chr3L 8561215 8561229 chr3L 8561294 8561307 4 77 1.0 3.0 2.0 1.3 92 chr3L 8561215 intron rhea + chr3L 8561261 intron rhea + chr3L 8561307 intron rhea + chr3L_4_8560001 chr3L_8560001 RAL-727 1263 chr3L 8644629 8644658 chr3L 8644704 8644734 6 73 2.5 1.0 1.8 2.1 105 chr3L 8644629 intergenic CG13305 - chr3L 8644682 intergenic CG13305 - chr3L 8644734 intergenic CG13305 - chr3L_6_8640001 chr3L_8640001 RAL-727 1264 chr3L 8690600 8690633 chr3L 8690846 8690874 28 243 5.0 6.0 5.5 4.3 274 chr3L 8690600 intergenic not near genes chr3L 8690737 intergenic not near genes chr3L 8690874 intergenic not near genes chr3L_28_8690001 chr3L_8690001 RAL-727 1265 chr3L 8696902 8696917 chr3L 8696960 8696963 8 65 2.5 4.5 3.5 1.8 61 chr3L 8696902 intergenic not near genes chr3L 8696932 intergenic not near genes chr3L 8696963 intergenic not near genes chr3L_8_8695001 chr3L_8695001 RAL-727 1266 chr3L 8755375 8755408 chr3L 8755658 8755691 22 281 3.0 4.5 3.8 4.6 316 chr3L 8755375 intron Fhos + chr3L 8755533 intron Fhos + chr3L 8755691 intron Fhos + chr3L_22_8755001 chr3L_8755001 RAL-727 1267 chr3L 8791275 8791292 chr3L 8796694 8796711 I-element 5 5420 11.0 0.0 5.5 0.8 5436 chr3L 8791275 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796711 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-727 1268 chr3L 9013691 9013692 chr3L 18417066 18417066 8 9403375 23.0 13.5 18.2 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-727 1269 chr3L 9024503 9024535 chr3L 9024582 9024615 16 80 5.0 2.5 3.8 3.3 112 chr3L 9024503 intergenic not near genes chr3L 9024559 intergenic not near genes chr3L 9024615 intergenic not near genes chr3L_16_9020001 chr3L_9020001 RAL-727 1270 chr3L 9076929 9076960 chr3L 9084489 9084520 412 15 7559 8.0 6.0 7.0 1.9 7591 chr3L 9076929 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084520 exon Tequila + chr3L_15_9080001 chr3L_9080001 RAL-727 1271 chr3L 9129210 9129237 chr3L 9129294 9129321 13 84 2.5 2.5 2.5 3.7 111 chr3L 9129210 intron bol - chr3L 9129266 intron bol - chr3L 9129321 intron bol - chr3L_13_9125001 chr3L_9125001 RAL-727 1272 chr3L 9130558 9130579 chr3L 9134319 9134340 412 8 3760 7.0 4.5 5.8 1.2 3782 chr3L 9130558 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-727 1273 chr3L 9164701 9164732 chr3L 9166161 9166199 hobo 11 1464 4.5 2.0 3.2 2.6 1498 chr3L 9164701 intron Rdl - chr3L 9165450 intron Rdl - chr3L 9166199 intron Rdl - chr3L_11_9165001 chr3L_9165001 RAL-727 1274 chr3L 9191902 9191908 chr3L 9191964 9191998 5 84 5.0 5.5 5.2 0.8 96 chr3L 9191902 intergenic not near genes chr3L 9191950 intergenic not near genes chr3L 9191998 intergenic not near genes chr3L_5_9190001 chr3L_9190001 RAL-727 1275 chr3L 9219244 9219281 chr3L 9219913 9219916 jockey 16 667 6.5 3.5 5.0 2.7 672 chr3L 9219244 intergenic not near genes chr3L 9219580 intergenic not near genes chr3L 9219916 intergenic not near genes chr3L_16_9215001 chr3L_9215001 RAL-727 1276 chr3L 9270616 9270651 chr3L 9278371 9278406 roo 7 7754 3.0 3.0 3.0 1.8 7790 chr3L 9270616 intron GluRIB + chr3L 9274511 intron GluRIB + chr3L 9278406 exon GluRIB + chr3L_7_9270001 chr3L_9270001 RAL-727 1277 chr3L 9443518 9443531 chr3L 9445309 9445322 S-element 5 1791 8.5 9.0 8.8 0.5 1804 chr3L 9443518 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445322 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-727 1278 chr3L 9501704 9501734 chr3L 9502187 9502217 roo 9 482 2.0 3.5 2.8 2.4 513 chr3L 9501704 intron path - chr3L 9501960 intron path - chr3L 9502217 intron path - chr3L_9_9500001 chr3L_9500001 RAL-727 1279 chr3L 9502618 9502644 chr3L 9502698 9502724 10 80 2.5 2.5 2.5 2.9 106 chr3L 9502618 intron path - chr3L 9502671 intron path - chr3L 9502724 intron path - chr3L_10_9500001 chr3L_9500001 RAL-727 1280 chr3L 9510910 9510957 chr3L 9511003 9511036 13 78 0.0 3.0 1.5 5.2 126 chr3L 9510910 intron RpS9 - chr3L 9510973 intron RpS9 - chr3L 9511036 intron RpS9 - chr3L_13_9510001 chr3L_9510001 RAL-727 1281 chr3L 9546655 9546675 chr3L 9546810 9546830 9 155 0.0 8.0 4.0 1.8 175 chr3L 9546655 intergenic not near genes chr3L 9546742 intergenic CG42673 + chr3L 9546830 intergenic CG42673 + chr3L_9_9545001 chr3L_9545001 RAL-727 1282 chr3L 9571901 9571934 chr3L 9572249 9572282 jockey 12 348 6.5 8.0 7.2 1.5 381 chr3L 9571901 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572282 intron CG42673 + chr3L_12_9570001 chr3L_9570001 RAL-727 1283 chr3L 9575906 9575944 chr3L 9580984 9580990 jockey 14 5074 4.5 3.5 4.0 2.8 5084 chr3L 9575906 intron CG42673 + chr3L 9578448 intron CG42673 + chr3L 9580990 intron CG42673 + chr3L_14_9575001 chr3L_9575001 RAL-727 1284 chr3L 9597143 9597162 chr3L 9603008 9603028 13 5865 11.5 38.0 24.8 0.5 5885 chr3L 9597143 intergenic CG42673 + chr3L 9600086 exon CG3222 + chr3L 9603028 intergenic CG3306 + chr3L_13_9600001 chr3L_9600001 RAL-727 1285 chr3L 9629737 9629769 chr3L 9629813 9629845 7 76 1.0 2.5 1.8 2.5 108 chr3L 9629737 intron CG8336 + chr3L 9629791 intron CG8336 + chr3L 9629845 intron CG8336 + chr3L_7_9625001 chr3L_9625001 RAL-727 1286 chr3L 9687776 9687781 chr3L 9687856 9687861 4 80 7.0 3.5 5.2 0.6 85 chr3L 9687776 intron CG6767 - chr3L 9687818 intron CG6767 - chr3L 9687861 intron CG6767 - chr3L_4_9685001 chr3L_9685001 RAL-727 1287 chr3L 9687782 9687808 chr3L 9687851 9687883 8 76 3.5 2.5 3.0 2.0 101 chr3L 9687782 intron CG6767 - chr3L 9687832 intron CG6767 - chr3L 9687883 intron CG6767 - chr3L_8_9685001 chr3L_9685001 RAL-727 1288 chr3L 9693620 9693643 chr3L 9693698 9693715 13 78 2.5 3.5 3.0 3.2 95 chr3L 9693620 intron CG6767 - chr3L 9693668 intron CG6767 - chr3L 9693715 intron CG6767 - chr3L_13_9690001 chr3L_9690001 RAL-727 1289 chr3L 9715597 9715628 chr3L 9715673 9715705 6 75 1.0 3.5 2.2 1.9 108 chr3L 9715597 intron vsg + chr3L 9715651 intron vsg + chr3L 9715705 intron vsg + chr3L_6_9715001 chr3L_9715001 RAL-727 1290 chr3L 9918880 9918911 chr3L 9918974 9918982 10 91 7.0 2.5 4.8 1.7 102 chr3L 9918880 intron CG34356 + chr3L 9918931 intron CG34356 + chr3L 9918982 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-727 1291 chr3L 9929678 9929700 chr3L 9938458 9938479 roo 13 8778 6.5 8.0 7.2 1.6 8801 chr3L 9929678 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_13_9930001 chr3L_9930001 RAL-727 1292 chr3L 9966786 9966808 chr3L 9970317 9970324 5 3519 52.5 31.0 41.8 0.1 3538 chr3L 9966786 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968555 5` UTR Nc + chr3L 9970324 exon Nc + chr3L_5_9965001 chr3L_9965001 RAL-727 1293 chr3L 9990494 9990528 chr3L 9990596 9990627 8 88 4.5 2.0 3.2 1.9 133 chr3L 9990494 intron dpr6 + chr3L 9990560 intron dpr6 + chr3L 9990627 intron dpr6 + chr3L_8_9990001 chr3L_9990001 RAL-727 1294 chr3L 10004085 10004101 chr3L 10004165 10004181 4 80 3.5 1.0 2.2 1.2 96 chr3L 10004085 exon dpr6 + chr3L 10004133 intron dpr6 + chr3L 10004181 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-727 1295 chr3L 10011589 10011621 chr3L 10011671 10011703 16 81 6.0 3.0 4.5 2.9 114 chr3L 10011589 intron dpr6 + chr3L 10011646 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_16_10010001 chr3L_10010001 RAL-727 1296 chr3L 10214733 10214829 chr3L 10214820 10214931 12 95 0.0 0.0 0.0 12.0 198 chr3L 10214733 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214931 intergenic not near genes chr3L_12_10210001 chr3L_10210001 RAL-727 1297 chr3L 10219429 10219458 chr3L 10219519 10219548 20 89 6.0 5.0 5.5 3.1 119 chr3L 10219429 exon CG32055 - chr3L 10219488 exon CG32055 - chr3L 10219548 intron CG32055 - chr3L_20_10215001 chr3L_10215001 RAL-727 1298 chr3L 10222740 10222776 chr3L 10222820 10222856 8 80 0.0 1.5 0.8 4.4 116 chr3L 10222740 intron scramb1 - chr3L 10222798 intron scramb1 - chr3L 10222856 intron scramb1 - chr3L_8_10220001 chr3L_10220001 RAL-727 1299 chr3L 10269764 10269782 chr3L 10269848 10269866 8 83 5.5 4.5 5.0 1.3 102 chr3L 10269764 5` UTR CR45242 + chr3L 10269815 5` UTR CR45242 + chr3L 10269866 5` UTR CR45242 + chr3L_8_10265001 chr3L_10265001 RAL-727 1300 chr3L 10298669 10298701 chr3L 10298756 10298788 13 87 0.5 3.5 2.0 4.3 119 chr3L 10298669 intergenic not near genes chr3L 10298728 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_13_10295001 chr3L_10295001 RAL-727 1301 chr3L 10308754 10308775 chr3L 10308831 10308852 8 77 3.5 7.0 5.2 1.3 98 chr3L 10308754 intergenic not near genes chr3L 10308803 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_8_10305001 chr3L_10305001 RAL-727 1302 chr3L 10328118 10328125 chr3L 10328230 10328237 4 112 6.0 7.0 6.5 0.5 119 chr3L 10328118 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328237 intergenic not near genes chr3L_4_10325001 chr3L_10325001 RAL-727 1303 chr3L 10395538 10395570 chr3L 10395690 10395722 11 149 4.0 4.0 4.0 2.2 184 chr3L 10395538 intergenic not near genes chr3L 10395630 intergenic not near genes chr3L 10395722 intergenic not near genes chr3L_11_10395001 chr3L_10395001 RAL-727 1304 chr3L 10414949 10414978 chr3L 10417314 10417350 Doc 18 2370 3.5 3.0 3.2 4.3 2401 chr3L 10414949 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417350 intergenic not near genes chr3L_18_10415001 chr3L_10415001 RAL-727 1305 chr3L 10450696 10450714 chr3L 10450776 10450794 6 80 0.0 7.0 3.5 1.3 98 chr3L 10450696 intergenic not near genes chr3L 10450745 intergenic not near genes chr3L 10450794 intergenic not near genes chr3L_6_10450001 chr3L_10450001 RAL-727 1306 chr3L 10537223 10537256 chr3L 10537299 10537332 12 76 0.5 3.0 1.8 4.3 109 chr3L 10537223 intron A2bp1 + chr3L 10537278 intron A2bp1 + chr3L 10537332 intron A2bp1 + chr3L_12_10535001 chr3L_10535001 RAL-727 1307 chr3L 10584279 10584300 chr3L 10584366 10584387 6 86 3.0 6.5 4.8 1.0 108 chr3L 10584279 intron A2bp1 + chr3L 10584333 intron A2bp1 + chr3L 10584387 intron A2bp1 + chr3L_6_10580001 chr3L_10580001 RAL-727 1308 chr3L 10621845 10621874 chr3L 10621932 10621961 9 86 3.0 0.0 1.5 3.6 116 chr3L 10621845 intergenic not near genes chr3L 10621903 intergenic not near genes chr3L 10621961 intergenic not near genes chr3L_9_10620001 chr3L_10620001 RAL-727 1309 chr3L 10658088 10658211 chr3L 10658165 10658338 15 103 2.0 2.0 2.0 5.0 250 chr3L 10658088 intron CG32066 - chr3L 10658213 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_15_10655001 chr3L_10655001 RAL-727 1310 chr3L 10820500 10820511 chr3L 10820649 10820660 6 149 0.5 0.0 0.2 5.0 160 chr3L 10820500 intergenic not near genes chr3L 10820580 intergenic not near genes chr3L 10820660 intergenic not near genes chr3L_6_10820001 chr3L_10820001 RAL-727 1311 chr3L 10887363 10887376 chr3L 10887442 10887455 6 79 0.0 2.5 1.2 2.7 92 chr3L 10887363 intergenic not near genes chr3L 10887409 intergenic not near genes chr3L 10887455 intergenic not near genes chr3L_6_10885001 chr3L_10885001 RAL-727 1312 chr3L 10910862 10910881 chr3L 10910954 10910973 7 92 4.5 5.0 4.8 1.2 111 chr3L 10910862 intergenic not near genes chr3L 10910918 intergenic not near genes chr3L 10910973 intergenic not near genes chr3L_7_10910001 chr3L_10910001 RAL-727 1313 chr3L 10957005 10957033 chr3L 10957079 10957109 19 74 5.0 3.5 4.2 3.7 104 chr3L 10957005 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957109 intergenic not near genes chr3L_19_10955001 chr3L_10955001 RAL-727 1314 chr3L 11027242 11027259 chr3L 11027317 11027336 4 77 43.0 35.5 39.2 0.1 94 chr3L 11027242 exon CG32079 + chr3L 11027289 exon CG32079 + chr3L 11027336 intergenic CG32079 +,CG32081 + chr3L_4_11025001 chr3L_11025001 RAL-727 1315 chr3L 11087058 11087087 chr3L 11088846 11088876 S-element 5 1787 4.5 2.5 3.5 1.1 1818 chr3L 11087058 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088876 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-727 1316 chr3L 11105296 11105327 chr3L 11107007 11107038 X-element 10 1710 3.5 4.0 3.8 2.1 1742 chr3L 11105296 intergenic not near genes chr3L 11106167 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-727 1317 chr3L 11135528 11135531 chr3L 11135758 11135761 4 230 2.5 3.0 2.8 1.1 233 chr3L 11135528 intergenic CG14143 + chr3L 11135644 intergenic CG14143 +,CG32082 + chr3L 11135761 intergenic CG14143 +,CG32082 + chr3L_4_11135001 chr3L_11135001 RAL-727 1318 chr3L 11145547 11145555 chr3L 11145637 11145645 5 90 0.0 5.5 2.8 1.3 98 chr3L 11145547 intron CG32082 + chr3L 11145596 intron CG32082 + chr3L 11145645 intron CG32082 + chr3L_5_11145001 chr3L_11145001 RAL-727 1319 chr3L 11157738 11157764 chr3L 11157857 11157883 10 115 3.0 6.5 4.8 1.7 145 chr3L 11157738 intron CG32082 + chr3L 11157810 intron CG32082 + chr3L 11157883 intron CG32082 + chr3L_10_11155001 chr3L_11155001 RAL-727 1320 chr3L 11241777 11241792 chr3L 11241859 11241874 8 82 1.0 4.0 2.5 2.3 97 chr3L 11241777 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241874 intergenic not near genes chr3L_8_11240001 chr3L_11240001 RAL-727 1321 chr3L 11245085 11245119 chr3L 11245177 11245190 21 90 9.5 7.5 8.5 2.2 105 chr3L 11245085 intergenic not near genes chr3L 11245138 intergenic not near genes chr3L 11245190 intergenic not near genes chr3L_21_11245001 chr3L_11245001 RAL-727 1322 chr3L 11264471 11264497 chr3L 11271423 11271449 17.6 12 6952 6.0 5.5 5.8 1.8 6978 chr3L 11264471 intergenic not near genes chr3L 11267960 intergenic not near genes chr3L 11271449 intergenic not near genes chr3L_12_11265001 chr3L_11265001 RAL-727 1323 chr3L 11303048 11303055 chr3L 11303134 11303141 8 86 1.0 0.0 0.5 5.3 93 chr3L 11303048 intergenic not near genes chr3L 11303094 intergenic not near genes chr3L 11303141 intergenic not near genes chr3L_8_11300001 chr3L_11300001 RAL-727 1324 chr3L 11329689 11329724 chr3L 11332894 11332929 jockey 5 3204 6.5 3.0 4.8 0.9 3240 chr3L 11329689 intergenic not near genes chr3L 11331309 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-727 1325 chr3L 11379327 11379348 chr3L 11379405 11379425 5 78 7.0 4.5 5.8 0.7 98 chr3L 11379327 intergenic not near genes chr3L 11379376 intergenic not near genes chr3L 11379425 intergenic not near genes chr3L_5_11375001 chr3L_11375001 RAL-727 1326 chr3L 11385502 11385513 chr3L 11385583 11385608 9 90 10.0 10.0 10.0 0.8 106 chr3L 11385502 intergenic not near genes chr3L 11385555 intergenic not near genes chr3L 11385608 intergenic not near genes chr3L_9_11385001 chr3L_11385001 RAL-727 1327 chr3L 11433787 11433813 chr3L 11433867 11433893 19 80 3.5 3.0 3.2 4.5 106 chr3L 11433787 intergenic not near genes chr3L 11433840 intergenic not near genes chr3L 11433893 intergenic not near genes chr3L_19_11430001 chr3L_11430001 RAL-727 1328 chr3L 11474622 11474653 chr3L 11474711 11474742 11 88 4.0 2.5 3.2 2.6 120 chr3L 11474622 intergenic Vha16-2 + chr3L 11474682 intergenic Vha16-2 + chr3L 11474742 intergenic Vha16-2 + chr3L_11_11470001 chr3L_11470001 RAL-727 1329 chr3L 11564789 11564813 chr3L 11572404 11572412 412 4 7609 2.0 1.0 1.5 1.6 7623 chr3L 11564789 exon CG33267 + chr3L 11568600 intron CG33267 + chr3L 11572412 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-727 1330 chr3L 11579555 11579585 chr3L 11579661 11579691 24 106 4.0 5.5 4.8 4.1 136 chr3L 11579555 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579691 intergenic CG43390 - chr3L_24_11575001 chr3L_11575001 RAL-727 1331 chr3L 11723081 11723111 chr3L 11727876 11727906 Doc 9 4795 4.5 2.0 3.2 2.1 4825 chr3L 11723081 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727906 3` UTR Bmcp + chr3L_9_11725001 chr3L_11725001 RAL-727 1332 chr3L 11740142 11740144 chr3L 11740235 11740242 4 96 11.5 5.5 8.5 0.4 100 chr3L 11740142 intron CG6024 - chr3L 11740192 intron CG6024 - chr3L 11740242 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-727 1333 chr3L 11744012 11744042 chr3L 11744119 11744145 14 107 4.5 0.0 2.2 4.4 133 chr3L 11744012 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744145 intron CG6024 - chr3L_14_11740001 chr3L_11740001 RAL-727 1334 chr3L 11770992 11771018 chr3L 11771078 11771104 21 84 6.0 9.5 7.8 2.4 112 chr3L 11770992 exon Muc68D - chr3L 11771048 exon Muc68D - chr3L 11771104 exon Muc68D - chr3L_21_11770001 chr3L_11770001 RAL-727 1335 chr3L 11846395 11846414 chr3L 11846515 11846534 4 120 0.0 0.5 0.2 3.3 139 chr3L 11846395 intergenic not near genes chr3L 11846464 intergenic not near genes chr3L 11846534 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-727 1336 chr3L 11849331 11849355 chr3L 11849431 11849455 12 99 2.0 3.5 2.8 3.2 124 chr3L 11849331 intergenic not near genes chr3L 11849393 intergenic not near genes chr3L 11849455 intergenic not near genes chr3L_12_11845001 chr3L_11845001 RAL-727 1337 chr3L 11864553 11864566 chr3L 11865848 11865854 pogo 5 1294 12.5 8.0 10.2 0.4 1301 chr3L 11864553 intron CG44837 - chr3L 11865204 intron CG44837 - chr3L 11865854 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-727 1338 chr3L 11864572 11864585 chr3L 11865847 11865880 pogo 16 1290 6.0 7.5 6.8 2.1 1308 chr3L 11864572 intron CG44837 - chr3L 11865226 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_16_11865001 chr3L_11865001 RAL-727 1339 chr3L 11984565 11984594 chr3L 11984656 11984669 9 85 3.0 0.5 1.8 3.2 104 chr3L 11984565 intergenic CG6938 + chr3L 11984617 intergenic CG6938 + chr3L 11984669 intergenic CG6938 + chr3L_9_11980001 chr3L_11980001 RAL-727 1340 chr3L 12013911 12013934 chr3L 12014002 12014025 13 89 6.0 3.0 4.5 2.4 114 chr3L 12013911 intron rols - chr3L 12013968 intron rols - chr3L 12014025 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-727 1341 chr3L 12029298 12029326 chr3L 12029376 12029404 18 77 2.5 1.5 2.0 6.0 106 chr3L 12029298 intron rols - chr3L 12029351 intron rols - chr3L 12029404 intron rols - chr3L_18_12025001 chr3L_12025001 RAL-727 1342 chr3L 12034889 12034920 chr3L 12034966 12034997 11 77 5.5 6.0 5.8 1.6 108 chr3L 12034889 intron rols - chr3L 12034943 intron rols - chr3L 12034997 intron rols - chr3L_11_12030001 chr3L_12030001 RAL-727 1343 chr3L 12052703 12052738 chr3L 12052792 12052827 19 89 2.0 5.0 3.5 4.2 124 chr3L 12052703 intron rols - chr3L 12052765 intron rols - chr3L 12052827 intron rols - chr3L_19_12050001 chr3L_12050001 RAL-727 1344 chr3L 12075424 12075449 chr3L 12075513 12075538 8 88 8.5 0.0 4.2 1.5 114 chr3L 12075424 intron Sema-5c - chr3L 12075481 intron Sema-5c - chr3L 12075538 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-727 1345 chr3L 12083920 12083952 chr3L 12084106 12084136 10 187 40.5 2.0 21.2 0.5 216 chr3L 12083920 intergenic not near genes chr3L 12084028 intergenic not near genes chr3L 12084136 intergenic not near genes chr3L_10_12080001 chr3L_12080001 RAL-727 1346 chr3L 12089081 12089112 chr3L 12089161 12089189 15 79 4.0 3.0 3.5 3.3 108 chr3L 12089081 3` UTR CG17154 + chr3L 12089135 3` UTR CG17154 + chr3L 12089189 3` UTR CG17154 + chr3L_15_12085001 chr3L_12085001 RAL-727 1347 chr3L 12170790 12170823 chr3L 12170872 12170905 14 81 2.0 3.0 2.5 4.0 115 chr3L 12170790 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170905 intron Rh7 - chr3L_14_12170001 chr3L_12170001 RAL-727 1348 chr3L 12183199 12183231 chr3L 12183279 12183311 10 78 1.5 3.0 2.2 3.1 112 chr3L 12183199 3` UTR CAH2 + chr3L 12183255 3` UTR CAH2 + chr3L 12183311 3` UTR CAH2 + chr3L_10_12180001 chr3L_12180001 RAL-727 1349 chr3L 12197400 12197420 chr3L 12197474 12197502 15 79 3.0 8.0 5.5 2.3 102 chr3L 12197400 intergenic CG11529 + chr3L 12197451 intergenic CG11529 + chr3L 12197502 intergenic CG11529 + chr3L_15_12195001 chr3L_12195001 RAL-727 1350 chr3L 12300845 12300879 chr3L 12300984 12301018 21 138 6.0 4.5 5.2 3.4 173 chr3L 12300845 intergenic CR44550 + chr3L 12300932 intergenic CR44550 + chr3L 12301018 5` UTR CR44550 + chr3L_21_12300001 chr3L_12300001 RAL-727 1351 chr3L 12304094 12304117 chr3L 12304169 12304193 13 74 7.5 6.5 7.0 1.6 99 chr3L 12304094 intergenic not near genes chr3L 12304144 intergenic not near genes chr3L 12304193 intergenic not near genes chr3L_13_12300001 chr3L_12300001 RAL-727 1352 chr3L 12312487 12312511 chr3L 12312565 12312587 9 76 5.5 8.0 6.8 1.2 100 chr3L 12312487 intergenic not near genes chr3L 12312537 intergenic not near genes chr3L 12312587 intergenic not near genes chr3L_9_12310001 chr3L_12310001 RAL-727 1353 chr3L 12326743 12326774 chr3L 12326819 12326850 12 74 2.0 5.0 3.5 2.7 107 chr3L 12326743 intergenic not near genes chr3L 12326796 intergenic not near genes chr3L 12326850 intergenic not near genes chr3L_12_12325001 chr3L_12325001 RAL-727 1354 chr3L 12381541 12381553 chr3L 12381619 12381631 4 78 5.0 10.0 7.5 0.5 90 chr3L 12381541 intron Ncc69 - chr3L 12381586 intron Ncc69 - chr3L 12381631 intron Ncc69 - chr3L_4_12380001 chr3L_12380001 RAL-727 1355 chr3L 12383867 12383894 chr3L 12384445 12384472 5 578 23.0 24.0 23.5 0.2 605 chr3L 12383867 intron Ncc69 - chr3L 12384170 intron Ncc69 - chr3L 12384472 intron Ncc69 - chr3L_5_12380001 chr3L_12380001 RAL-727 1356 chr3L 12392456 12392473 chr3L 12392575 12392592 6 119 6.5 8.5 7.5 0.7 136 chr3L 12392456 intergenic not near genes chr3L 12392524 intergenic not near genes chr3L 12392592 intergenic not near genes chr3L_6_12390001 chr3L_12390001 RAL-727 1357 chr3L 12548534 12548567 chr3L 12548688 12548724 19 156 2.5 6.0 4.2 3.7 190 chr3L 12548534 intron sowah - chr3L 12548629 intron sowah - chr3L 12548724 intron sowah - chr3L_19_12545001 chr3L_12545001 RAL-727 1358 chr3L 12565416 12565446 chr3L 12565496 12565526 18 77 3.5 6.5 5.0 3.0 110 chr3L 12565416 intron sowah - chr3L 12565471 intron sowah - chr3L 12565526 intron sowah - chr3L_18_12565001 chr3L_12565001 RAL-727 1359 chr3L 12578047 12578068 chr3L 12578135 12578156 7 88 0.5 1.5 1.0 3.5 109 chr3L 12578047 intergenic not near genes chr3L 12578102 intergenic not near genes chr3L 12578156 intergenic not near genes chr3L_7_12575001 chr3L_12575001 RAL-727 1360 chr3L 12615739 12615773 chr3L 12615815 12615849 5 74 5.0 5.0 5.0 0.8 110 chr3L 12615739 intron caup + chr3L 12615794 intron caup + chr3L 12615849 intron caup + chr3L_5_12615001 chr3L_12615001 RAL-727 1361 chr3L 12626153 12626165 chr3L 12626262 12626274 6 109 1.5 3.5 2.5 1.7 121 chr3L 12626153 intergenic not near genes chr3L 12626214 intergenic not near genes chr3L 12626274 intergenic not near genes chr3L_6_12625001 chr3L_12625001 RAL-727 1362 chr3L 12647950 12647977 chr3L 12648026 12648053 9 76 3.0 1.5 2.2 2.8 103 chr3L 12647950 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648053 5` UTR CR32111 + chr3L_9_12645001 chr3L_12645001 RAL-727 1363 chr3L 12654381 12654412 chr3L 12654461 12654492 7 80 2.0 4.0 3.0 1.8 111 chr3L 12654381 intergenic not near genes chr3L 12654436 intergenic not near genes chr3L 12654492 intergenic not near genes chr3L_7_12650001 chr3L_12650001 RAL-727 1364 chr3L 12706642 12706655 chr3L 12706769 12706782 6 127 4.5 3.0 3.8 1.2 140 chr3L 12706642 intron mirr + chr3L 12706712 intron mirr + chr3L 12706782 intron mirr + chr3L_6_12705001 chr3L_12705001 RAL-727 1365 chr3L 12863899 12863925 chr3L 12863991 12864017 17 92 3.5 2.5 3.0 4.2 118 chr3L 12863899 intergenic not near genes chr3L 12863958 intergenic not near genes chr3L 12864017 intergenic not near genes chr3L_17_12860001 chr3L_12860001 RAL-727 1366 chr3L 12874937 12874958 chr3L 12877229 12877250 jockey 16 2292 6.0 7.0 6.5 2.1 2313 chr3L 12874937 intergenic not near genes chr3L 12876094 intergenic not near genes chr3L 12877250 intergenic not near genes chr3L_16_12875001 chr3L_12875001 RAL-727 1367 chr3L 12919290 12919311 chr3L 12924741 12924746 Rt1c 13 5459 8.0 7.5 7.8 1.5 5456 chr3L 12919290 intergenic not near genes chr3L 12922018 intergenic not near genes chr3L 12924746 intergenic not near genes chr3L_13_12920001 chr3L_12920001 RAL-727 1368 chr3L 12955130 12955160 chr3L 12955206 12955236 15 76 3.5 1.0 2.2 4.7 106 chr3L 12955130 intergenic CG10752 - chr3L 12955183 intergenic not near genes chr3L 12955236 intergenic not near genes chr3L_15_12955001 chr3L_12955001 RAL-727 1369 chr3L 12957789 12957820 chr3L 12962266 12962287 copia 17 4480 4.5 6.5 5.5 2.6 4498 chr3L 12957789 intergenic not near genes chr3L 12960038 intergenic not near genes chr3L 12962287 intergenic not near genes chr3L_17_12960001 chr3L_12960001 RAL-727 1370 chr3L 13024042 13024075 chr3L 13024118 13024151 19 76 2.5 4.5 3.5 4.2 109 chr3L 13024042 intron RpS12 + chr3L 13024096 intron RpS12 + chr3L 13024151 intron RpS12 + chr3L_19_13020001 chr3L_13020001 RAL-727 1371 chr3L 13031575 13031606 chr3L 13031662 13031693 20 85 4.5 5.0 4.8 3.4 118 chr3L 13031575 intron CG17672 + chr3L 13031634 intron CG17672 + chr3L 13031693 intron CG17672 + chr3L_20_13030001 chr3L_13030001 RAL-727 1372 chr3L 13047745 13047770 chr3L 13047825 13047850 12 80 7.0 7.0 7.0 1.5 105 chr3L 13047745 3` UTR CG11279 + chr3L 13047798 3` UTR CG11279 + chr3L 13047850 3` UTR CG11279 + chr3L_12_13045001 chr3L_13045001 RAL-727 1373 chr3L 13056716 13056722 chr3L 13056801 13056807 4 84 0.0 5.5 2.8 1.1 91 chr3L 13056716 intergenic not near genes chr3L 13056762 intergenic not near genes chr3L 13056807 intergenic not near genes chr3L_4_13055001 chr3L_13055001 RAL-727 1374 chr3L 13085060 13085071 chr3L 13085139 13085150 6 79 1.0 4.5 2.8 1.6 90 chr3L 13085060 intergenic not near genes chr3L 13085105 intergenic not near genes chr3L 13085150 intergenic not near genes chr3L_6_13085001 chr3L_13085001 RAL-727 1375 chr3L 13092070 13092098 chr3L 13092147 13092175 7 77 1.0 4.0 2.5 2.0 105 chr3L 13092070 intergenic not near genes chr3L 13092122 intergenic not near genes chr3L 13092175 intergenic not near genes chr3L_7_13090001 chr3L_13090001 RAL-727 1376 chr3L 13095816 13095828 chr3L 13095904 13095916 6 88 7.0 0.0 3.5 1.3 100 chr3L 13095816 intergenic not near genes chr3L 13095866 intergenic not near genes chr3L 13095916 intergenic not near genes chr3L_6_13095001 chr3L_13095001 RAL-727 1377 chr3L 13134517 13134529 chr3L 13134603 13134615 5 86 3.5 4.0 3.8 1.0 98 chr3L 13134517 intergenic not near genes chr3L 13134566 intergenic not near genes chr3L 13134615 intergenic not near genes chr3L_5_13130001 chr3L_13130001 RAL-727 1378 chr3L 13159291 13159294 chr3L 13159370 13159373 5 79 1.5 2.5 2.0 1.7 82 chr3L 13159291 intergenic not near genes chr3L 13159332 intergenic not near genes chr3L 13159373 intergenic not near genes chr3L_5_13155001 chr3L_13155001 RAL-727 1379 chr3L 13245098 13245122 chr3L 13245230 13245250 5 128 5.0 3.5 4.2 1.0 152 chr3L 13245098 intron caps + chr3L 13245174 intron caps + chr3L 13245250 intron caps + chr3L_5_13245001 chr3L_13245001 RAL-727 1380 chr3L 13264791 13264800 chr3L 13264867 13264876 6 76 3.5 1.0 2.2 1.9 85 chr3L 13264791 intron caps + chr3L 13264834 intron caps + chr3L 13264876 intron caps + chr3L_6_13260001 chr3L_13260001 RAL-727 1381 chr3L 13267282 13267317 chr3L 13267395 13267415 8 111 3.5 1.5 2.5 2.3 133 chr3L 13267282 intron caps + chr3L 13267348 intron caps + chr3L 13267415 intron caps + chr3L_8_13265001 chr3L_13265001 RAL-727 1382 chr3L 13301251 13301275 chr3L 13301333 13301357 10 82 0.0 0.0 0.0 10.0 106 chr3L 13301251 intergenic SP + chr3L 13301304 intergenic SP + chr3L 13301357 intergenic SP + chr3L_10_13300001 chr3L_13300001 RAL-727 1383 chr3L 13311731 13311763 chr3L 13311869 13311891 12 137 3.0 4.5 3.8 2.5 160 chr3L 13311731 intergenic not near genes chr3L 13311811 intergenic not near genes chr3L 13311891 intergenic not near genes chr3L_12_13310001 chr3L_13310001 RAL-727 1384 chr3L 13315858 13315866 chr3L 13315943 13315951 5 85 1.0 2.0 1.5 2.0 93 chr3L 13315858 intergenic not near genes chr3L 13315904 intergenic not near genes chr3L 13315951 intergenic not near genes chr3L_5_13315001 chr3L_13315001 RAL-727 1385 chr3L 13400529 13400544 chr3L 13400605 13400620 4 76 1.0 2.5 1.8 1.4 91 chr3L 13400529 intron sens - chr3L 13400574 intron sens - chr3L 13400620 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-727 1386 chr3L 13457916 13457950 chr3L 13458237 13458271 16 320 2.0 5.5 3.8 3.3 355 chr3L 13457916 intron CG10738 + chr3L 13458094 intron CG10738 + chr3L 13458271 intron CG10738 + chr3L_16_13455001 chr3L_13455001 RAL-727 1387 chr3L 13525160 13525190 chr3L 13532951 13532974 roo 19 7792 10.0 7.0 8.5 2.0 7814 chr3L 13525160 intergenic not near genes chr3L 13529067 intergenic not near genes chr3L 13532974 intergenic not near genes chr3L_19_13525001 chr3L_13525001 RAL-727 1388 chr3L 13629529 13629549 chr3L 13629638 13629658 5 107 3.5 5.5 4.5 0.9 129 chr3L 13629529 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629658 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-727 1389 chr3L 13639640 13639673 chr3L 13639725 13639725 8 75 2.0 3.0 2.5 2.3 85 chr3L 13639640 intron bru-3 - chr3L 13639682 intron bru-3 - chr3L 13639725 intron bru-3 - chr3L_8_13635001 chr3L_13635001 RAL-727 1390 chr3L 13677532 13677562 chr3L 13677609 13677637 12 76 2.0 2.5 2.2 3.8 105 chr3L 13677532 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677637 intron bru-3 - chr3L_12_13675001 chr3L_13675001 RAL-727 1391 chr3L 13703649 13703673 chr3L 13703726 13703730 6 74 1.5 4.0 2.8 1.6 81 chr3L 13703649 intron bru-3 - chr3L 13703690 intron bru-3 - chr3L 13703730 intron bru-3 - chr3L_6_13700001 chr3L_13700001 RAL-727 1392 chr3L 13704078 13704110 chr3L 13704162 13704194 14 81 1.5 4.0 2.8 3.7 116 chr3L 13704078 intron bru-3 - chr3L 13704136 intron bru-3 - chr3L 13704194 intron bru-3 - chr3L_14_13700001 chr3L_13700001 RAL-727 1393 chr3L 13740036 13740049 chr3L 13740128 13740141 7 91 7.5 2.5 5.0 1.2 105 chr3L 13740036 intron bru-3 - chr3L 13740088 intron bru-3 - chr3L 13740141 intron bru-3 - chr3L_7_13740001 chr3L_13740001 RAL-727 1394 chr3L 13774636 13774664 chr3L 13774722 13774750 7 83 3.5 3.0 3.2 1.7 114 chr3L 13774636 intron bru-3 - chr3L 13774693 intron bru-3 - chr3L 13774750 intron bru-3 - chr3L_7_13770001 chr3L_13770001 RAL-727 1395 chr3L 13804545 13804578 chr3L 13822831 13822857 roo 9 18285 4.5 6.5 5.5 1.4 18312 chr3L 13804545 intergenic not near genes chr3L 13813701 intergenic not near genes chr3L 13822857 intergenic not near genes chr3L_9_13810001 chr3L_13810001 RAL-727 1396 chr3L 13833974 13834009 chr3L 13834086 13834123 11 112 3.5 5.0 4.2 2.1 149 chr3L 13833974 intergenic not near genes chr3L 13834048 intergenic not near genes chr3L 13834123 intergenic not near genes chr3L_11_13830001 chr3L_13830001 RAL-727 1397 chr3L 13838933 13838959 chr3L 13839152 13839178 11 219 3.5 5.5 4.5 2.0 245 chr3L 13838933 intergenic not near genes chr3L 13839056 intergenic not near genes chr3L 13839178 intergenic not near genes chr3L_11_13835001 chr3L_13835001 RAL-727 1398 chr3L 13867090 13867105 chr3L 13867203 13867218 6 113 8.5 11.0 9.8 0.6 128 chr3L 13867090 intergenic CG8745 -,dysc - chr3L 13867154 intergenic CG8745 -,dysc - chr3L 13867218 intergenic dysc -,CG8745 - chr3L_6_13865001 chr3L_13865001 RAL-727 1399 chr3L 13920419 13920432 chr3L 13920499 13920512 9 80 1.5 2.0 1.8 3.2 93 chr3L 13920419 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920512 intron Rgl - chr3L_9_13920001 chr3L_13920001 RAL-727 1400 chr3L 13988475 13988505 chr3L 13988596 13988626 6 121 2.5 2.5 2.5 1.7 151 chr3L 13988475 intron,3` UTR CG17364 -,CG9040 + chr3L 13988550 intron,3` UTR CG17364 -,CG9040 + chr3L 13988626 intron,3` UTR CG17364 -,CG9040 + chr3L_6_13985001 chr3L_13985001 RAL-727 1401 chr3L 14126220 14126231 chr3L 14126304 14126315 8 83 7.5 6.0 6.8 1.0 95 chr3L 14126220 intron Sox21b - chr3L 14126268 intron Sox21b - chr3L 14126315 intron Sox21b - chr3L_8_14125001 chr3L_14125001 RAL-727 1402 chr3L 14214859 14214871 chr3L 14214944 14214956 6 85 0.0 16.0 8.0 0.7 97 chr3L 14214859 intron nuf + chr3L 14214908 intron nuf + chr3L 14214956 intron nuf + chr3L_6_14210001 chr3L_14210001 RAL-727 1403 chr3L 14267375 14267392 chr3L 14271810 14271832 F-element 8 4439 6.0 4.5 5.2 1.3 4457 chr3L 14267375 intergenic not near genes chr3L 14269604 intergenic not near genes chr3L 14271832 intergenic not near genes chr3L_8_14265001 chr3L_14265001 RAL-727 1404 chr3L 14267394 14267403 chr3L 14271808 14271809 F-element 6 4425 4.0 4.5 4.2 1.2 4415 chr3L 14267394 intergenic not near genes chr3L 14269602 intergenic not near genes chr3L 14271809 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-727 1405 chr3L 14282587 14282607 chr3L 14282667 14282671 8 77 6.0 4.5 5.2 1.3 84 chr3L 14282587 intron fz + chr3L 14282629 intron fz + chr3L 14282671 intron fz + chr3L_8_14280001 chr3L_14280001 RAL-727 1406 chr3L 14295985 14296016 chr3L 14296466 14296502 roo 13 481 1.0 5.5 3.2 3.1 517 chr3L 14295985 intron fz + chr3L 14296244 intron fz + chr3L 14296502 intron fz + chr3L_13_14295001 chr3L_14295001 RAL-727 1407 chr3L 14312023 14312058 chr3L 14316834 14316841 X-element 12 4807 0.5 1.0 0.8 6.7 4818 chr3L 14312023 exon fz + chr3L 14314432 intron fz + chr3L 14316841 intron fz + chr3L_12_14310001 chr3L_14310001 RAL-727 1408 chr3L 14338297 14338328 chr3L 14338393 14338424 14 96 3.0 3.5 3.2 3.3 127 chr3L 14338297 intron fz + chr3L 14338360 intron fz + chr3L 14338424 intron fz + chr3L_14_14335001 chr3L_14335001 RAL-727 1409 chr3L 14341412 14341416 chr3L 14341547 14341551 5 135 1.0 0.5 0.8 2.8 139 chr3L 14341412 intron fz + chr3L 14341482 intron fz + chr3L 14341551 intron fz + chr3L_5_14340001 chr3L_14340001 RAL-727 1410 chr3L 14356528 14356536 chr3L 14356608 14356616 7 79 12.5 8.0 10.2 0.6 88 chr3L 14356528 intron fz + chr3L 14356572 intron fz + chr3L 14356616 intron fz + chr3L_7_14355001 chr3L_14355001 RAL-727 1411 chr3L 14356540 14356553 chr3L 14356605 14356631 8 76 7.0 7.5 7.2 1.0 91 chr3L 14356540 intron fz + chr3L 14356586 intron fz + chr3L 14356631 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-727 1412 chr3L 14370023 14370051 chr3L 14370103 14370106 7 77 6.5 5.0 5.8 1.0 83 chr3L 14370023 intergenic CG13481 - chr3L 14370064 intergenic CG13481 - chr3L 14370106 intergenic CG13481 - chr3L_7_14370001 chr3L_14370001 RAL-727 1413 chr3L 14441600 14441624 chr3L 14441738 14441773 8 147 2.0 5.5 3.8 1.7 173 chr3L 14441600 intron bbg - chr3L 14441686 intron bbg - chr3L 14441773 intron bbg - chr3L_8_14440001 chr3L_14440001 RAL-727 1414 chr3L 14444718 14444748 chr3L 14444893 14444923 16 175 5.0 12.0 8.5 1.7 205 chr3L 14444718 intron bbg - chr3L 14444820 intron bbg - chr3L 14444923 intron bbg - chr3L_16_14440001 chr3L_14440001 RAL-727 1415 chr3L 14462884 14462907 chr3L 14462972 14462995 14 87 0.5 3.5 2.0 4.7 111 chr3L 14462884 intron bbg - chr3L 14462940 intron bbg - chr3L 14462995 intron bbg - chr3L_14_14460001 chr3L_14460001 RAL-727 1416 chr3L 14468444 14468473 chr3L 14473650 14473679 copia 13 5206 5.0 7.0 6.0 1.9 5235 chr3L 14468444 intron bbg - chr3L 14471062 intron bbg - chr3L 14473679 intron bbg - chr3L_13_14470001 chr3L_14470001 RAL-727 1417 chr3L 14486025 14486049 chr3L 14486106 14486130 11 80 1.5 7.0 4.2 2.1 105 chr3L 14486025 intron bbg - chr3L 14486078 intron bbg - chr3L 14486130 intron bbg - chr3L_11_14485001 chr3L_14485001 RAL-727 1418 chr3L 14516159 14516191 chr3L 14516235 14516267 21 75 2.0 1.0 1.5 8.4 108 chr3L 14516159 intron bbg - chr3L 14516213 intron bbg - chr3L 14516267 intron bbg - chr3L_21_14515001 chr3L_14515001 RAL-727 1419 chr3L 14584158 14584187 chr3L 14584245 14584274 11 86 1.0 1.5 1.2 5.0 116 chr3L 14584158 intron HGTX - chr3L 14584216 intron HGTX - chr3L 14584274 intron HGTX - chr3L_11_14580001 chr3L_14580001 RAL-727 1420 chr3L 14611453 14611477 chr3L 14611550 14611574 12 97 2.5 1.5 2.0 4.0 121 chr3L 14611453 intergenic not near genes chr3L 14611514 intergenic not near genes chr3L 14611574 intergenic not near genes chr3L_12_14610001 chr3L_14610001 RAL-727 1421 chr3L 14618412 14618423 chr3L 14618622 14618634 4 212 5.5 7.0 6.2 0.6 222 chr3L 14618412 intron shd + chr3L 14618523 intron shd + chr3L 14618634 intron shd + chr3L_4_14615001 chr3L_14615001 RAL-727 1422 chr3L 14652085 14652115 chr3L 14652164 14652197 12 83 3.0 3.0 3.0 3.0 112 chr3L 14652085 intron dlp + chr3L 14652141 intron dlp + chr3L 14652197 intron dlp + chr3L_12_14650001 chr3L_14650001 RAL-727 1423 chr3L 14693540 14693574 chr3L 14693639 14693673 16 99 2.0 5.0 3.5 3.6 133 chr3L 14693540 intron ome + chr3L 14693606 intron ome + chr3L 14693673 intron ome + chr3L_16_14690001 chr3L_14690001 RAL-727 1424 chr3L 14721184 14721208 chr3L 14723027 14723051 Rt1c 7 1839 3.0 2.5 2.8 1.8 1867 chr3L 14721184 intron ome + chr3L 14722118 intron ome + chr3L 14723051 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-727 1425 chr3L 14725604 14725628 chr3L 14728598 14728622 Doc 5 2994 8.0 11.5 9.8 0.5 3018 chr3L 14725604 intron ome + chr3L 14727113 intron ome + chr3L 14728622 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-727 1426 chr3L 14729517 14729548 chr3L 14729630 14729661 16 111 3.0 1.5 2.2 5.0 144 chr3L 14729517 intron ome + chr3L 14729589 intron ome + chr3L 14729661 intron ome + chr3L_16_14725001 chr3L_14725001 RAL-727 1427 chr3L 14906150 14906157 chr3L 14906209 14906242 4 76 4.5 2.0 3.2 1.0 92 chr3L 14906150 intron DCX-EMAP + chr3L 14906196 intron DCX-EMAP + chr3L 14906242 intron DCX-EMAP + chr3L_4_14905001 chr3L_14905001 RAL-727 1428 chr3L 14912186 14912211 chr3L 14912268 14912293 11 81 5.0 5.5 5.2 1.8 107 chr3L 14912186 intron DCX-EMAP + chr3L 14912240 intron DCX-EMAP + chr3L 14912293 intron DCX-EMAP + chr3L_11_14910001 chr3L_14910001 RAL-727 1429 chr3L 14917664 14917696 chr3L 14917742 14917779 15 82 3.5 2.5 3.0 3.8 115 chr3L 14917664 intron DCX-EMAP + chr3L 14917722 intron DCX-EMAP + chr3L 14917779 intron DCX-EMAP + chr3L_15_14915001 chr3L_14915001 RAL-727 1430 chr3L 14959993 14960014 chr3L 14960077 14960098 5 84 4.5 4.0 4.2 1.0 105 chr3L 14959993 intergenic not near genes chr3L 14960046 intergenic not near genes chr3L 14960098 intergenic not near genes chr3L_5_14960001 chr3L_14960001 RAL-727 1431 chr3L 14970756 14970762 chr3L 14971066 14971072 F-element 5 310 3.5 3.0 3.2 1.2 316 chr3L 14970756 intergenic Tom + chr3L 14970914 intergenic not near genes chr3L 14971072 intergenic not near genes chr3L_5_14970001 chr3L_14970001 RAL-727 1432 chr3L 15048116 15048150 chr3L 15048481 15048514 16 366 45.0 29.5 37.2 0.4 398 chr3L 15048116 intron Sytbeta - chr3L 15048315 intron Sytbeta - chr3L 15048514 intron Sytbeta - chr3L_16_15045001 chr3L_15045001 RAL-727 1433 chr3L 15085047 15085083 chr3L 15086213 15086244 1360 10 1161 4.0 2.0 3.0 2.5 1197 chr3L 15085047 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086244 intron cp309 - chr3L_10_15085001 chr3L_15085001 RAL-727 1434 chr3L 15146169 15146173 chr3L 15146258 15146262 5 89 0.0 6.5 3.2 1.2 93 chr3L 15146169 3` UTR Pex3 + chr3L 15146216 3` UTR Pex3 + chr3L 15146262 3` UTR Pex3 + chr3L_5_15145001 chr3L_15145001 RAL-727 1435 chr3L 15151225 15151237 chr3L 15151409 15151421 5 184 8.0 5.5 6.8 0.6 196 chr3L 15151225 intron FucTA + chr3L 15151323 intron FucTA + chr3L 15151421 intron FucTA + chr3L_5_15150001 chr3L_15150001 RAL-727 1436 chr3L 15165034 15165046 chr3L 15165133 15165145 5 99 0.0 0.0 0.0 5.0 111 chr3L 15165034 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165145 intergenic not near genes chr3L_5_15165001 chr3L_15165001 RAL-727 1437 chr3L 15219743 15219774 chr3L 15219825 15219856 4 82 4.0 3.0 3.5 0.9 113 chr3L 15219743 intergenic not near genes chr3L 15219800 intergenic not near genes chr3L 15219856 intergenic not near genes chr3L_4_15215001 chr3L_15215001 RAL-727 1438 chr3L 15251454 15251467 chr3L 15251558 15251571 5 104 10.5 6.5 8.5 0.5 117 chr3L 15251454 intergenic not near genes chr3L 15251512 intergenic not near genes chr3L 15251571 intergenic not near genes chr3L_5_15250001 chr3L_15250001 RAL-727 1439 chr3L 15251470 15251488 chr3L 15251556 15251592 9 94 4.5 6.0 5.2 1.5 122 chr3L 15251470 intergenic not near genes chr3L 15251531 intergenic not near genes chr3L 15251592 intergenic not near genes chr3L_9_15250001 chr3L_15250001 RAL-727 1440 chr3L 15257437 15257449 chr3L 15257650 15257662 4 213 3.0 2.0 2.5 1.1 225 chr3L 15257437 intergenic not near genes chr3L 15257550 intergenic not near genes chr3L 15257662 intergenic not near genes chr3L_4_15255001 chr3L_15255001 RAL-727 1441 chr3L 15295772 15295801 chr3L 15298615 15298644 gypsy5 9 2843 5.0 4.5 4.8 1.6 2872 chr3L 15295772 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298644 intergenic Best4 + chr3L_9_15295001 chr3L_15295001 RAL-727 1442 chr3L 15324382 15324398 chr3L 15324460 15324483 10 83 5.5 8.0 6.8 1.3 101 chr3L 15324382 intergenic not near genes chr3L 15324432 intergenic not near genes chr3L 15324483 intergenic not near genes chr3L_10_15320001 chr3L_15320001 RAL-727 1443 chr3L 15423760 15423784 chr3L 15426604 15426628 opus 9 2844 3.0 2.0 2.5 2.6 2868 chr3L 15423760 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_9_15425001 chr3L_15425001 RAL-727 1444 chr3L 15444652 15444683 chr3L 15444746 15444776 10 91 3.5 7.0 5.2 1.6 124 chr3L 15444652 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444776 intergenic not near genes chr3L_10_15440001 chr3L_15440001 RAL-727 1445 chr3L 15466037 15466132 chr3L 15466119 15466228 11 86 0.0 0.0 0.0 11.0 191 chr3L 15466037 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466228 intergenic not near genes chr3L_11_15465001 chr3L_15465001 RAL-727 1446 chr3L 15482606 15482624 chr3L 15482687 15482705 8 81 5.0 5.5 5.2 1.3 99 chr3L 15482606 intergenic not near genes chr3L 15482656 intergenic not near genes chr3L 15482705 intergenic not near genes chr3L_8_15480001 chr3L_15480001 RAL-727 1447 chr3L 15533125 15533159 chr3L 15533205 15533241 7 80 1.0 3.5 2.2 2.2 116 chr3L 15533125 intergenic not near genes chr3L 15533183 intergenic not near genes chr3L 15533241 intergenic not near genes chr3L_7_15530001 chr3L_15530001 RAL-727 1448 chr3L 15541619 15541652 chr3L 15541709 15541738 10 88 7.0 2.0 4.5 1.8 119 chr3L 15541619 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541738 intron CrebA + chr3L_10_15540001 chr3L_15540001 RAL-727 1449 chr3L 15541947 15541984 chr3L 15542041 15542078 9 94 1.0 1.5 1.2 4.1 131 chr3L 15541947 intron CrebA + chr3L 15542012 intron CrebA + chr3L 15542078 intron CrebA + chr3L_9_15540001 chr3L_15540001 RAL-727 1450 chr3L 15575769 15575782 chr3L 15575833 15575868 6 72 2.0 4.5 3.2 1.4 99 chr3L 15575769 3` UTR CG6498 + chr3L 15575818 3` UTR CG6498 + chr3L 15575868 3` UTR CG6498 + chr3L_6_15575001 chr3L_15575001 RAL-727 1451 chr3L 15641794 15641812 chr3L 15641879 15641897 6 85 0.0 3.0 1.5 2.4 103 chr3L 15641794 intron comm3 - chr3L 15641846 intron comm3 - chr3L 15641897 intron comm3 - chr3L_6_15640001 chr3L_15640001 RAL-727 1452 chr3L 15760680 15760714 chr3L 15760765 15760798 7 83 0.5 0.0 0.2 5.8 118 chr3L 15760680 intergenic not near genes chr3L 15760739 intergenic not near genes chr3L 15760798 intergenic not near genes chr3L_7_15760001 chr3L_15760001 RAL-727 1453 chr3L 15768999 15769009 chr3L 15769110 15769120 9 110 3.0 0.5 1.8 3.2 121 chr3L 15768999 intergenic not near genes chr3L 15769060 intergenic not near genes chr3L 15769120 intergenic not near genes chr3L_9_15765001 chr3L_15765001 RAL-727 1454 chr3L 15809167 15809193 chr3L 15809251 15809276 12 83 3.5 5.0 4.2 2.3 109 chr3L 15809167 intergenic CG6244 +,CG13445 + chr3L 15809222 intergenic CG13445 +,CG6244 + chr3L 15809276 intergenic CG13445 +,CG6244 + chr3L_12_15805001 chr3L_15805001 RAL-727 1455 chr3L 15832252 15832279 chr3L 15832333 15832360 12 81 7.5 3.0 5.2 1.9 108 chr3L 15832252 intergenic CG12713 +,dbo + chr3L 15832306 intergenic CG12713 +,dbo + chr3L 15832360 intergenic CG12713 +,dbo + chr3L_12_15830001 chr3L_15830001 RAL-727 1456 chr3L 15899229 15899262 chr3L 15899795 15899808 jockey 5 553 3.0 5.5 4.2 1.0 579 chr3L 15899229 intergenic pHCl - chr3L 15899518 intergenic pHCl - chr3L 15899808 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-727 1457 chr3L 15929196 15929227 chr3L 15938343 15938373 roo 14 9147 8.0 3.5 5.8 2.1 9177 chr3L 15929196 intron Pka-C3 - chr3L 15933784 intron Pka-C3 - chr3L 15938373 intron Pka-C3 - chr3L_14_15930001 chr3L_15930001 RAL-727 1458 chr3L 15944587 15944591 chr3L 15944663 15944664 4 75 11.5 6.5 9.0 0.4 77 chr3L 15944587 intron Pka-C3 - chr3L 15944626 intron Pka-C3 - chr3L 15944664 intron Pka-C3 - chr3L_4_15940001 chr3L_15940001 RAL-727 1459 chr3L 15944592 15944614 chr3L 15944661 15944690 19 73 6.5 6.0 6.2 2.6 98 chr3L 15944592 intron Pka-C3 - chr3L 15944641 intron Pka-C3 - chr3L 15944690 intron Pka-C3 - chr3L_19_15940001 chr3L_15940001 RAL-727 1460 chr3L 15946500 15946514 chr3L 15946586 15946600 7 85 12.5 0.0 6.2 1.0 100 chr3L 15946500 intron Pka-C3 - chr3L 15946550 intron Pka-C3 - chr3L 15946600 intron Pka-C3 - chr3L_7_15945001 chr3L_15945001 RAL-727 1461 chr3L 16070741 16070762 chr3L 16070818 16070839 7 77 4.0 2.0 3.0 1.8 98 chr3L 16070741 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070839 exon Mbs + chr3L_7_16070001 chr3L_16070001 RAL-727 1462 chr3L 16145572 16145601 chr3L 16145794 16145824 11 220 2.5 4.0 3.2 2.6 252 chr3L 16145572 intron CG5151 - chr3L 16145698 intron CG5151 - chr3L 16145824 intron CG5151 - chr3L_11_16145001 chr3L_16145001 RAL-727 1463 chr3L 16162598 16162622 chr3L 16162682 16162702 7 81 5.5 6.0 5.8 1.0 104 chr3L 16162598 intron CG5151 - chr3L 16162650 intron CG5151 - chr3L 16162702 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-727 1464 chr3L 16184104 16184122 chr3L 16188923 16188941 X-element 6 4819 9.0 4.5 6.8 0.8 4837 chr3L 16184104 intergenic not near genes chr3L 16186522 intergenic not near genes chr3L 16188941 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-727 1465 chr3L 16184124 16184140 chr3L 16188921 16188959 X-element 8 4813 3.0 4.5 3.8 1.7 4835 chr3L 16184124 intergenic not near genes chr3L 16186542 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-727 1466 chr3L 16225375 16225409 chr3L 16225451 16225478 10 72 3.0 3.0 3.0 2.5 103 chr3L 16225375 intergenic not near genes chr3L 16225426 intergenic not near genes chr3L 16225478 intergenic not near genes chr3L_10_16225001 chr3L_16225001 RAL-727 1467 chr3L 16241896 16241928 chr3L 16241980 16242012 13 82 6.5 6.0 6.2 1.8 116 chr3L 16241896 intergenic not near genes chr3L 16241954 intergenic not near genes chr3L 16242012 intergenic not near genes chr3L_13_16240001 chr3L_16240001 RAL-727 1468 chr3L 16322823 16322858 chr3L 16322912 16322948 27 89 5.5 8.5 7.0 3.4 125 chr3L 16322823 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322948 intergenic not near genes chr3L_27_16320001 chr3L_16320001 RAL-727 1469 chr3L 16360003 16360006 chr3L 16360256 16360259 5 253 0.0 7.5 3.8 1.0 256 chr3L 16360003 intron CG45057 - chr3L 16360131 intron CG45057 - chr3L 16360259 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-727 1470 chr3L 16431850 16431863 chr3L 16431945 16431958 9 95 2.0 3.5 2.8 2.4 108 chr3L 16431850 intron,intron CG33158 +,dsx-c73A - chr3L 16431904 intron,intron CG33158 +,dsx-c73A - chr3L 16431958 intron,intron CG33158 +,dsx-c73A - chr3L_9_16430001 chr3L_16430001 RAL-727 1471 chr3L 16443850 16443879 chr3L 16446190 16446219 Doc 15 2338 5.5 7.5 6.5 2.0 2369 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446219 intron,intron CG33158 +,dsx-c73A - chr3L_15_16445001 chr3L_16445001 RAL-727 1472 chr3L 16457602 16457633 chr3L 16457686 16457713 15 83 3.0 3.0 3.0 3.8 111 chr3L 16457602 intron CG33158 + chr3L 16457658 intron CG33158 + chr3L 16457713 intron CG33158 + chr3L_15_16455001 chr3L_16455001 RAL-727 1473 chr3L 16493976 16494012 chr3L 16494493 16494493 jockey 23 510 10.0 3.5 6.8 2.9 517 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494234 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494493 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_23_16490001 chr3L_16490001 RAL-727 1474 chr3L 16498535 16498553 chr3L 16498638 16498661 4 102 4.0 0.0 2.0 1.3 126 chr3L 16498535 intron,exon CG43373 -,st + chr3L 16498598 intron,intron CG43373 -,st + chr3L 16498661 intron,intron CG43373 -,st + chr3L_4_16495001 chr3L_16495001 RAL-727 1475 chr3L 16533571 16533587 chr3L 16533682 16533698 7 110 2.0 2.5 2.2 2.2 127 chr3L 16533571 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533698 intron CG43373 - chr3L_7_16530001 chr3L_16530001 RAL-727 1476 chr3L 16563232 16563248 chr3L 16563313 16563326 5 80 6.0 0.0 3.0 1.2 94 chr3L 16563232 intergenic Mipp1 - chr3L 16563279 intergenic Mipp1 - chr3L 16563326 intergenic Mipp1 - chr3L_5_16560001 chr3L_16560001 RAL-727 1477 chr3L 16616515 16616537 chr3L 16621843 16621865 297 9 5327 5.5 8.0 6.8 1.2 5350 chr3L 16616515 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621865 3` UTR Abl - chr3L_9_16615001 chr3L_16615001 RAL-727 1478 chr3L 16638773 16638800 chr3L 16638853 16638880 17 80 2.5 5.0 3.8 3.5 107 chr3L 16638773 intron Abl - chr3L 16638826 intron Abl - chr3L 16638880 intron Abl - chr3L_17_16635001 chr3L_16635001 RAL-727 1479 chr3L 16643346 16643363 chr3L 16643424 16643441 8 78 3.5 5.0 4.2 1.5 95 chr3L 16643346 intron Abl - chr3L 16643394 intron Abl - chr3L 16643441 intron Abl - chr3L_8_16640001 chr3L_16640001 RAL-727 1480 chr3L 16648879 16648904 chr3L 16648983 16649008 13 103 3.5 6.0 4.8 2.2 129 chr3L 16648879 3` UTR Baldspot - chr3L 16648944 3` UTR Baldspot - chr3L 16649008 3` UTR Baldspot - chr3L_13_16645001 chr3L_16645001 RAL-727 1481 chr3L 16728097 16728123 chr3L 16728182 16728216 9 89 3.5 0.0 1.8 3.2 119 chr3L 16728097 intergenic PGRP-SB1 -,Dbp73D - chr3L 16728156 intergenic PGRP-SB1 -,Dbp73D - chr3L 16728216 intergenic PGRP-SB1 -,Dbp73D - chr3L_9_16725001 chr3L_16725001 RAL-727 1482 chr3L 16772492 16772512 chr3L 16772582 16772602 16 90 11.5 3.5 7.5 1.9 110 chr3L 16772492 intron Nrt + chr3L 16772547 intron Nrt + chr3L 16772602 intron Nrt + chr3L_16_16770001 chr3L_16770001 RAL-727 1483 chr3L 16799276 16799284 chr3L 16799353 16799356 4 76 4.5 3.5 4.0 0.8 80 chr3L 16799276 intron CG9674 - chr3L 16799316 intron CG9674 - chr3L 16799356 intron CG9674 - chr3L_4_16795001 chr3L_16795001 RAL-727 1484 chr3L 16818746 16818779 chr3L 16818822 16818855 11 75 5.0 6.5 5.8 1.6 109 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818855 intron,intron nudC +,CG13024 - chr3L_11_16815001 chr3L_16815001 RAL-727 1485 chr3L 16845024 16845043 chr3L 16845137 16845156 8 113 3.5 9.0 6.2 1.1 132 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_8_16845001 chr3L_16845001 RAL-727 1486 chr3L 16869574 16869603 chr3L 16869657 16869681 15 82 5.5 3.0 4.2 2.9 107 chr3L 16869574 intron Lmpt + chr3L 16869628 intron Lmpt + chr3L 16869681 intron Lmpt + chr3L_15_16865001 chr3L_16865001 RAL-727 1487 chr3L 16870869 16870890 chr3L 16870960 16870981 4 91 2.5 3.0 2.8 1.1 112 chr3L 16870869 intron Lmpt + chr3L 16870925 intron Lmpt + chr3L 16870981 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-727 1488 chr3L 16945725 16945757 chr3L 16954878 16954891 roo 23 9148 9.5 2.5 6.0 3.3 9166 chr3L 16945725 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954891 5` UTR Nc73EF + chr3L_23_16950001 chr3L_16950001 RAL-727 1489 chr3L 17026792 17026824 chr3L 17026871 17026903 11 80 7.0 5.0 6.0 1.6 111 chr3L 17026792 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026903 3` UTR Fit2 + chr3L_11_17025001 chr3L_17025001 RAL-727 1490 chr3L 17027165 17027187 chr3L 17027257 17027279 8 92 1.0 2.0 1.5 3.2 114 chr3L 17027165 intergenic Fit2 +,CG7730 + chr3L 17027222 intergenic Fit2 +,CG7730 + chr3L 17027279 intergenic Fit2 +,CG7730 + chr3L_8_17025001 chr3L_17025001 RAL-727 1491 chr3L 17034935 17034939 chr3L 17035123 17035127 G2 4 188 2.0 2.5 2.2 1.2 192 chr3L 17034935 intergenic not near genes chr3L 17035031 intergenic not near genes chr3L 17035127 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-727 1492 chr3L 17085002 17085031 chr3L 17094151 17094171 roo 18 9148 9.0 6.0 7.5 2.1 9169 chr3L 17085002 intron Rbp6 - chr3L 17089586 intron Rbp6 - chr3L 17094171 intron Rbp6 - chr3L_18_17085001 chr3L_17085001 RAL-727 1493 chr3L 17099164 17099191 chr3L 17099285 17099310 12 120 7.0 5.5 6.2 1.7 146 chr3L 17099164 intron Rbp6 - chr3L 17099237 intron Rbp6 - chr3L 17099310 intron Rbp6 - chr3L_12_17095001 chr3L_17095001 RAL-727 1494 chr3L 17117104 17117130 chr3L 17117189 17117215 14 83 2.5 3.5 3.0 3.5 111 chr3L 17117104 intron Rbp6 - chr3L 17117160 intron Rbp6 - chr3L 17117215 intron Rbp6 - chr3L_14_17115001 chr3L_17115001 RAL-727 1495 chr3L 17149166 17149180 chr3L 17149247 17149261 11 81 4.5 0.0 2.2 3.4 95 chr3L 17149166 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149261 intron Rbp6 - chr3L_11_17145001 chr3L_17145001 RAL-727 1496 chr3L 17194439 17194444 chr3L 17194523 17194530 4 86 5.5 9.0 7.2 0.5 91 chr3L 17194439 intron Rbp6 - chr3L 17194484 intron Rbp6 - chr3L 17194530 intron Rbp6 - chr3L_4_17190001 chr3L_17190001 RAL-727 1497 chr3L 17316460 17316478 chr3L 17316571 17316590 4 106 0.5 3.5 2.0 1.3 130 chr3L 17316460 intergenic not near genes chr3L 17316525 intergenic not near genes chr3L 17316590 intergenic not near genes chr3L_4_17315001 chr3L_17315001 RAL-727 1498 chr3L 17331071 17331097 chr3L 17331160 17331186 10 89 2.0 4.0 3.0 2.5 115 chr3L 17331071 intergenic not near genes chr3L 17331128 intergenic not near genes chr3L 17331186 intergenic not near genes chr3L_10_17330001 chr3L_17330001 RAL-727 1499 chr3L 17367437 17367460 chr3L 17367529 17367554 12 94 2.5 4.0 3.2 2.9 117 chr3L 17367437 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367554 intergenic CR45688 +,Cad74A - chr3L_12_17365001 chr3L_17365001 RAL-727 1500 chr3L 17408912 17408928 chr3L 17408988 17409004 9 75 2.5 0.0 1.2 4.1 92 chr3L 17408912 intron blot - chr3L 17408958 intron blot - chr3L 17409004 intron blot - chr3L_9_17405001 chr3L_17405001 RAL-727 1501 chr3L 17430462 17430497 chr3L 17430542 17430558 9 76 1.0 4.5 2.8 2.4 96 chr3L 17430462 intron,3` UTR CG32174 -,frc - chr3L 17430510 intron,3` UTR CG32174 -,frc - chr3L 17430558 intron,3` UTR CG32174 -,frc - chr3L_9_17430001 chr3L_17430001 RAL-727 1502 chr3L 17510743 17510763 chr3L 17510826 17510847 7 81 3.0 4.0 3.5 1.6 104 chr3L 17510743 exon Oatp74D + chr3L 17510795 intron Oatp74D + chr3L 17510847 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-727 1503 chr3L 17516987 17516997 chr3L 17524540 17524554 412 5 7556 9.5 11.0 10.2 0.4 7567 chr3L 17516987 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524554 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-727 1504 chr3L 17516998 17517010 chr3L 17524536 17524568 412 6 7548 7.5 8.0 7.8 0.7 7570 chr3L 17516998 intron CG7564 + chr3L 17520783 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-727 1505 chr3L 17594240 17594273 chr3L 17594321 17594354 20 80 3.5 10.5 7.0 2.5 114 chr3L 17594240 intron Eip74EF - chr3L 17594297 intron Eip74EF - chr3L 17594354 intron Eip74EF - chr3L_20_17590001 chr3L_17590001 RAL-727 1506 chr3L 17691976 17691993 chr3L 17692060 17692077 8 84 7.0 4.0 5.5 1.2 101 chr3L 17691976 intron Ccn + chr3L 17692026 intron Ccn + chr3L 17692077 intron Ccn + chr3L_8_17690001 chr3L_17690001 RAL-727 1507 chr3L 17730855 17730883 chr3L 17738185 17738208 mdg1 10 7330 3.0 5.0 4.0 2.0 7353 chr3L 17730855 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738208 intron Ccn + chr3L_10_17730001 chr3L_17730001 RAL-727 1508 chr3L 17789841 17789871 chr3L 17789917 17789947 13 76 3.5 5.5 4.5 2.4 106 chr3L 17789841 intergenic not near genes chr3L 17789894 intergenic not near genes chr3L 17789947 intergenic not near genes chr3L_13_17785001 chr3L_17785001 RAL-727 1509 chr3L 17799811 17799840 chr3L 17801598 17801605 S-element 8 1784 2.0 4.0 3.0 2.0 1794 chr3L 17799811 intron NUCB1 - chr3L 17800708 intron NUCB1 - chr3L 17801605 intron NUCB1 - chr3L_8_17800001 chr3L_17800001 RAL-727 1510 chr3L 17823706 17823714 chr3L 17825186 17825194 4 1480 5.0 6.5 5.8 0.6 1488 chr3L 17823706 intron Grd + chr3L 17824450 intron Grd + chr3L 17825194 intron Grd + chr3L_4_17820001 chr3L_17820001 RAL-727 1511 chr3L 17823716 17823726 chr3L 17825177 17825206 5 1475 2.5 5.0 3.8 1.0 1490 chr3L 17823716 intron Grd + chr3L 17824461 intron Grd + chr3L 17825206 intron Grd + chr3L_5_17820001 chr3L_17820001 RAL-727 1512 chr3L 17834322 17834354 chr3L 17834486 17834518 8 164 2.0 2.5 2.2 2.5 196 chr3L 17834322 intron Grd + chr3L 17834420 intron Grd + chr3L 17834518 intron Grd + chr3L_8_17830001 chr3L_17830001 RAL-727 1513 chr3L 17837623 17837655 chr3L 17837711 17837743 13 86 3.0 2.0 2.5 3.7 120 chr3L 17837623 exon Grd + chr3L 17837683 intron Grd + chr3L 17837743 exon Grd + chr3L_13_17835001 chr3L_17835001 RAL-727 1514 chr3L 17874045 17874073 chr3L 17874130 17874159 20 84 7.5 5.5 6.5 2.7 114 chr3L 17874045 intergenic not near genes chr3L 17874102 intergenic not near genes chr3L 17874159 intergenic not near genes chr3L_20_17870001 chr3L_17870001 RAL-727 1515 chr3L 17918384 17918397 chr3L 17921187 17921200 opus 5 2803 3.0 6.5 4.8 0.9 2816 chr3L 17918384 intergenic not near genes chr3L 17919792 intergenic not near genes chr3L 17921200 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-727 1516 chr3L 17957066 17957086 chr3L 17957144 17957176 11 86 1.0 2.0 1.5 4.4 110 chr3L 17957066 intron Eip75B - chr3L 17957121 intron Eip75B - chr3L 17957176 intron Eip75B - chr3L_11_17955001 chr3L_17955001 RAL-727 1517 chr3L 17991578 17991605 chr3L 17991656 17991683 6 78 4.0 5.5 4.8 1.0 105 chr3L 17991578 intron Eip75B - chr3L 17991630 intron Eip75B - chr3L 17991683 intron Eip75B - chr3L_6_17990001 chr3L_17990001 RAL-727 1518 chr3L 18000674 18000703 chr3L 18000751 18000780 12 75 4.5 7.0 5.8 1.8 106 chr3L 18000674 intron Eip75B - chr3L 18000727 intron Eip75B - chr3L 18000780 intron Eip75B - chr3L_12_18000001 chr3L_18000001 RAL-727 1519 chr3L 18006222 18006250 chr3L 18006346 18006364 7 121 3.0 3.5 3.2 1.7 142 chr3L 18006222 intron Eip75B - chr3L 18006293 intron Eip75B - chr3L 18006364 intron Eip75B - chr3L_7_18005001 chr3L_18005001 RAL-727 1520 chr3L 18016144 18016179 chr3L 18016262 18016282 8 115 3.0 2.5 2.8 2.1 138 chr3L 18016144 intron Eip75B - chr3L 18016213 intron Eip75B - chr3L 18016282 intron Eip75B - chr3L_8_18015001 chr3L_18015001 RAL-727 1521 chr3L 18020565 18020582 chr3L 18020671 18020688 5 106 5.0 2.0 3.5 1.1 123 chr3L 18020565 intron Eip75B - chr3L 18020626 intron Eip75B - chr3L 18020688 intron Eip75B - chr3L_5_18020001 chr3L_18020001 RAL-727 1522 chr3L 18021356 18021388 chr3L 18021448 18021480 16 92 8.0 6.0 7.0 2.0 124 chr3L 18021356 intron Eip75B - chr3L 18021418 intron Eip75B - chr3L 18021480 intron Eip75B - chr3L_16_18020001 chr3L_18020001 RAL-727 1523 chr3L 18029969 18029983 chr3L 18030046 18030060 9 77 3.0 0.0 1.5 3.6 91 chr3L 18029969 intron Eip75B - chr3L 18030014 intron Eip75B - chr3L 18030060 intron Eip75B - chr3L_9_18030001 chr3L_18030001 RAL-727 1524 chr3L 18047705 18047741 chr3L 18056762 18056798 roo 19 9057 3.5 3.5 3.5 4.2 9093 chr3L 18047705 intron Eip75B - chr3L 18052252 intron Eip75B - chr3L 18056798 intron Eip75B - chr3L_19_18050001 chr3L_18050001 RAL-727 1525 chr3L 18103147 18103166 chr3L 18103230 18103249 9 83 4.0 6.5 5.2 1.5 102 chr3L 18103147 intron CG13698 - chr3L 18103198 intron CG13698 - chr3L 18103249 intron CG13698 - chr3L_9_18100001 chr3L_18100001 RAL-727 1526 chr3L 18118218 18118241 chr3L 18118292 18118319 8 77 4.0 2.0 3.0 2.0 101 chr3L 18118218 3` UTR,intron CG32195 +,CG7341 + chr3L 18118268 3` UTR,intron CG32195 +,CG7341 + chr3L 18118319 3` UTR,intron CG32195 +,CG7341 + chr3L_8_18115001 chr3L_18115001 RAL-727 1527 chr3L 18124424 18124430 chr3L 18124508 18124514 5 84 3.0 6.5 4.8 0.9 90 chr3L 18124424 intergenic not near genes chr3L 18124469 intergenic not near genes chr3L 18124514 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-727 1528 chr3L 18163984 18164241 chr3L 18164186 18164408 11 189 2.0 3.0 2.5 3.1 424 chr3L 18163984 intergenic not near genes chr3L 18164196 intergenic not near genes chr3L 18164408 intergenic not near genes chr3L_11_18160001 chr3L_18160001 RAL-727 1529 chr3L 18198929 18198931 chr3L 24821492 24821494 9 6622563 18.5 16.5 17.5 0.5 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_9_21510001 chr3L_21510001 RAL-727 1530 chr3L 18207574 18207590 chr3L 18207655 18207671 5 81 2.5 0.0 1.2 2.3 97 chr3L 18207574 intergenic not near genes chr3L 18207622 intergenic not near genes chr3L 18207671 intergenic not near genes chr3L_5_18205001 chr3L_18205001 RAL-727 1531 chr3L 18223166 18223185 chr3L 18223249 18223266 6 82 1.5 0.5 1.0 3.0 100 chr3L 18223166 intergenic not near genes chr3L 18223216 intergenic not near genes chr3L 18223266 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-727 1532 chr3L 18248952 18248988 chr3L 18249050 18249086 16 98 1.0 3.5 2.2 5.0 134 chr3L 18248952 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_16_18245001 chr3L_18245001 RAL-727 1533 chr3L 18262473 18262488 chr3L 18262556 18262571 8 83 2.0 2.5 2.2 2.5 98 chr3L 18262473 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262571 intergenic not near genes chr3L_8_18260001 chr3L_18260001 RAL-727 1534 chr3L 18301351 18301377 chr3L 18301440 18301466 13 89 0.5 2.0 1.2 5.9 115 chr3L 18301351 intergenic CG13700 - chr3L 18301408 intergenic CG13700 - chr3L 18301466 intergenic CG13700 - chr3L_13_18300001 chr3L_18300001 RAL-727 1535 chr3L 18408746 18408760 chr3L 18408832 18408846 8 86 0.0 5.5 2.8 2.1 100 chr3L 18408746 intergenic not near genes chr3L 18408796 intergenic not near genes chr3L 18408846 intergenic not near genes chr3L_8_18405001 chr3L_18405001 RAL-727 1536 chr3L 18445253 18445273 chr3L 18445328 18445330 6 74 2.5 1.5 2.0 2.0 77 chr3L 18445253 intergenic not near genes chr3L 18445292 intergenic not near genes chr3L 18445330 intergenic not near genes chr3L_6_18445001 chr3L_18445001 RAL-727 1537 chr3L 18448616 18448619 chr3L 18448708 18448711 4 92 7.0 2.0 4.5 0.7 95 chr3L 18448616 intergenic not near genes chr3L 18448664 intergenic not near genes chr3L 18448711 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-727 1538 chr3L 18456278 18456303 chr3L 18456366 18456391 15 87 4.5 7.0 5.8 2.2 113 chr3L 18456278 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_15_18455001 chr3L_18455001 RAL-727 1539 chr3L 18506134 18506150 chr3L 18509597 18509613 F-element 10 3462 5.0 4.5 4.8 1.7 3479 chr3L 18506134 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509613 intergenic not near genes chr3L_10_18505001 chr3L_18505001 RAL-727 1540 chr3L 18506151 18506161 chr3L 18509596 18509624 F-element 4 3458 3.0 4.0 3.5 0.9 3473 chr3L 18506151 intergenic not near genes chr3L 18507888 intergenic not near genes chr3L 18509624 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-727 1541 chr3L 18528630 18528660 chr3L 18537791 18537819 roo 17 9160 4.0 7.0 5.5 2.6 9189 chr3L 18528630 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_17_18530001 chr3L_18530001 RAL-727 1542 chr3L 18544149 18544153 chr3L 18546159 18546173 4 2012 37.0 17.5 27.2 0.1 2024 chr3L 18544149 intergenic not near genes chr3L 18545161 intergenic not near genes chr3L 18546173 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-727 1543 chr3L 18547777 18547805 chr3L 18548305 18548319 8 525 4.0 4.5 4.2 1.5 542 chr3L 18547777 intergenic not near genes chr3L 18548048 intergenic not near genes chr3L 18548319 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-727 1544 chr3L 18565111 18565125 chr3L 18565190 18565204 9 79 5.5 5.0 5.2 1.5 93 chr3L 18565111 intron AstC-R1 + chr3L 18565158 intron AstC-R1 + chr3L 18565204 intron AstC-R1 + chr3L_9_18565001 chr3L_18565001 RAL-727 1545 chr3L 18567030 18567052 chr3L 18567116 18567138 15 85 4.5 7.5 6.0 2.1 108 chr3L 18567030 intron AstC-R1 + chr3L 18567084 intron AstC-R1 + chr3L 18567138 intron AstC-R1 + chr3L_15_18565001 chr3L_18565001 RAL-727 1546 chr3L 18638577 18638599 chr3L 18638671 18638693 4 94 4.0 3.5 3.8 0.8 116 chr3L 18638577 intron MYPT-75D + chr3L 18638635 intron MYPT-75D + chr3L 18638693 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-727 1547 chr3L 18650929 18650947 chr3L 18651006 18651019 6 74 3.0 5.5 4.2 1.2 90 chr3L 18650929 intron MYPT-75D + chr3L 18650974 intron MYPT-75D + chr3L 18651019 intron MYPT-75D + chr3L_6_18650001 chr3L_18650001 RAL-727 1548 chr3L 18679682 18679704 chr3L 18679778 18679810 14 105 4.0 6.5 5.2 2.3 128 chr3L 18679682 intergenic not near genes chr3L 18679746 intergenic not near genes chr3L 18679810 intergenic not near genes chr3L_14_18675001 chr3L_18675001 RAL-727 1549 chr3L 18710757 18710790 chr3L 18718709 18718742 Stalker2 13 7950 4.5 2.0 3.2 3.1 7985 chr3L 18710757 intergenic not near genes chr3L 18714750 intergenic not near genes chr3L 18718742 intergenic not near genes chr3L_13_18710001 chr3L_18710001 RAL-727 1550 chr3L 18772407 18772438 chr3L 18781088 18781102 roo 18 8680 8.0 9.0 8.5 1.9 8695 chr3L 18772407 intron ftz-f1 - chr3L 18776754 intron ftz-f1 - chr3L 18781102 intron ftz-f1 - chr3L_18_18775001 chr3L_18775001 RAL-727 1551 chr3L 18833788 18833812 chr3L 18834944 18834976 1360 11 1161 7.0 5.5 6.2 1.5 1188 chr3L 18833788 intron Indy - chr3L 18834382 intron Indy - chr3L 18834976 intron Indy - chr3L_11_18830001 chr3L_18830001 RAL-727 1552 chr3L 18843864 18843882 chr3L 18843962 18843980 9 98 22.0 30.0 26.0 0.3 116 chr3L 18843864 intron Indy - chr3L 18843922 intron Indy - chr3L 18843980 intron Indy - chr3L_9_18840001 chr3L_18840001 RAL-727 1553 chr3L 18839060 18839093 chr3L 18847184 18847217 18 8125 25.5 20.0 22.8 0.8 8157 chr3L 18839060 intron Indy - chr3L 18843138 intron Indy - chr3L 18847217 intergenic not near genes chr3L_18_18840001 chr3L_18840001 RAL-727 1554 chr3L 18929973 18929987 chr3L 18930046 18930071 6 82 4.5 7.0 5.8 0.9 98 chr3L 18929973 intron CG32204 - chr3L 18930022 intron CG32204 - chr3L 18930071 exon CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-727 1555 chr3L 18933096 18933128 chr3L 18933179 18933213 10 85 1.5 2.5 2.0 3.3 117 chr3L 18933096 intron CG32204 - chr3L 18933154 intron CG32204 - chr3L 18933213 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-727 1556 chr3L 18933823 18933853 chr3L 18934209 18934240 13 386 3.0 5.0 4.0 2.6 417 chr3L 18933823 intron CG32204 - chr3L 18934032 intron CG32204 - chr3L 18934240 intron CG32204 - chr3L_13_18930001 chr3L_18930001 RAL-727 1557 chr3L 18969556 18969576 chr3L 18969627 18969650 11 73 5.0 6.0 5.5 1.7 94 chr3L 18969556 intergenic not near genes chr3L 18969603 intergenic not near genes chr3L 18969650 intergenic not near genes chr3L_11_18965001 chr3L_18965001 RAL-727 1558 chr3L 19008834 19008872 chr3L 19009175 19009198 jockey 12 333 3.0 6.5 4.8 2.1 364 chr3L 19008834 intron nkd - chr3L 19009016 intron nkd - chr3L 19009198 intron nkd - chr3L_12_19005001 chr3L_19005001 RAL-727 1559 chr3L 19025935 19025966 chr3L 19026019 19026050 15 82 5.5 5.0 5.2 2.4 115 chr3L 19025935 intron nkd - chr3L 19025992 intron nkd - chr3L 19026050 intron nkd - chr3L_15_19025001 chr3L_19025001 RAL-727 1560 chr3L 19115641 19115671 chr3L 19115819 19115839 BS 14 178 8.0 2.5 5.2 2.3 198 chr3L 19115641 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115839 intron CG14082 - chr3L_14_19115001 chr3L_19115001 RAL-727 1561 chr3L 19117040 19117073 chr3L 19124487 19124520 mdg1 14 7446 10.0 8.0 9.0 1.4 7480 chr3L 19117040 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-727 1562 chr3L 19150766 19150799 chr3L 19151183 19151218 13 413 1.0 2.5 1.8 4.6 452 chr3L 19150766 intron fz2 - chr3L 19150992 intron fz2 - chr3L 19151218 intron fz2 - chr3L_13_19150001 chr3L_19150001 RAL-727 1563 chr3L 19182385 19182418 chr3L 19182466 19182499 12 81 3.5 2.0 2.8 3.2 114 chr3L 19182385 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182499 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-727 1564 chr3L 19190079 19190105 chr3L 19190153 19190182 7 76 3.0 7.5 5.2 1.1 103 chr3L 19190079 intron fz2 - chr3L 19190130 intron fz2 - chr3L 19190182 intron fz2 - chr3L_7_19190001 chr3L_19190001 RAL-727 1565 chr3L 19208061 19208090 chr3L 19209433 19209464 Doc 13 1372 4.0 4.0 4.0 2.6 1403 chr3L 19208061 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209464 intron fz2 - chr3L_13_19205001 chr3L_19205001 RAL-727 1566 chr3L 19210122 19210133 chr3L 19210215 19210229 4 95 0.0 3.0 1.5 1.6 107 chr3L 19210122 intron fz2 - chr3L 19210176 intron fz2 - chr3L 19210229 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-727 1567 chr3L 19220636 19220637 chr3L 22908066 22908066 5 3687429 19.5 37.5 28.5 0.2 3687430 chr3L 19220636 intron fz2 - chr3L 21064351 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-727 1568 chr3L 19221702 19221722 chr3L 19221813 19221833 10 110 3.0 3.5 3.2 2.4 131 chr3L 19221702 intron fz2 - chr3L 19221768 intron fz2 - chr3L 19221833 intron fz2 - chr3L_10_19220001 chr3L_19220001 RAL-727 1569 chr3L 19222374 19222396 chr3L 19222495 19222517 7 121 3.5 3.5 3.5 1.6 143 chr3L 19222374 intron fz2 - chr3L 19222446 intron fz2 - chr3L 19222517 intron fz2 - chr3L_7_19220001 chr3L_19220001 RAL-727 1570 chr3L 19238723 19238751 chr3L 19238830 19238858 8 106 3.5 4.5 4.0 1.6 135 chr3L 19238723 intergenic not near genes chr3L 19238790 intergenic not near genes chr3L 19238858 intergenic not near genes chr3L_8_19235001 chr3L_19235001 RAL-727 1571 chr3L 19251049 19251068 chr3L 19251148 19251156 9 98 9.0 3.5 6.2 1.2 107 chr3L 19251049 intergenic not near genes chr3L 19251102 intergenic not near genes chr3L 19251156 intergenic not near genes chr3L_9_19250001 chr3L_19250001 RAL-727 1572 chr3L 19262216 19262242 chr3L 19262298 19262324 6 82 3.0 4.5 3.8 1.2 108 chr3L 19262216 3` UTR Bet1 + chr3L 19262270 3` UTR,3` UTR Bet1 +,Max - chr3L 19262324 3` UTR,3` UTR Bet1 +,Max - chr3L_6_19260001 chr3L_19260001 RAL-727 1573 chr3L 19263237 19263261 chr3L 19263398 19263422 14 161 4.5 3.5 4.0 2.8 185 chr3L 19263237 intron Max - chr3L 19263330 intron Max - chr3L 19263422 exon Max - chr3L_14_19260001 chr3L_19260001 RAL-727 1574 chr3L 19274181 19274209 chr3L 19274260 19274286 11 78 4.5 9.0 6.8 1.4 105 chr3L 19274181 intergenic CG14085 + chr3L 19274234 intergenic CG14085 + chr3L 19274286 intergenic CG14085 + chr3L_11_19270001 chr3L_19270001 RAL-727 1575 chr3L 19295810 19295829 chr3L 19295936 19295955 11 126 4.5 3.0 3.8 2.3 145 chr3L 19295810 intron fal + chr3L 19295882 intron fal + chr3L 19295955 intron fal + chr3L_11_19295001 chr3L_19295001 RAL-727 1576 chr3L 19305083 19305103 chr3L 19305437 19305473 13 359 37.5 43.0 40.2 0.3 390 chr3L 19305083 intron pip - chr3L 19305278 intron pip - chr3L 19305473 intron pip - chr3L_13_19305001 chr3L_19305001 RAL-727 1577 chr3L 19316263 19316285 chr3L 19316349 19316371 8 86 3.0 4.5 3.8 1.7 108 chr3L 19316263 intron pip - chr3L 19316317 intron pip - chr3L 19316371 intron pip - chr3L_8_19315001 chr3L_19315001 RAL-727 1578 chr3L 19323595 19323627 chr3L 19323758 19323790 9 161 8.5 3.5 6.0 1.3 195 chr3L 19323595 intron pip - chr3L 19323692 intron pip - chr3L 19323790 intron pip - chr3L_9_19320001 chr3L_19320001 RAL-727 1579 chr3L 19343589 19343624 chr3L 19343729 19343763 7 140 2.0 2.5 2.2 2.2 174 chr3L 19343589 exon CG32206 - chr3L 19343676 intron CG32206 - chr3L 19343763 intron CG32206 - chr3L_7_19340001 chr3L_19340001 RAL-727 1580 chr3L 19488491 19488501 chr3L 19488573 19488583 7 81 3.5 8.0 5.8 1.0 92 chr3L 19488491 intergenic pncr009:3L -,CG32212 + chr3L 19488537 intergenic pncr009:3L -,CG32212 + chr3L 19488583 intergenic pncr009:3L -,CG32212 + chr3L_7_19485001 chr3L_19485001 RAL-727 1581 chr3L 19527922 19527957 chr3L 19528001 19528033 12 79 4.5 5.0 4.8 2.1 111 chr3L 19527922 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528033 intergenic not near genes chr3L_12_19525001 chr3L_19525001 RAL-727 1582 chr3L 19544242 19544268 chr3L 19544318 19544344 4 74 3.0 4.5 3.8 0.8 102 chr3L 19544242 intergenic CG9279 -,l(3)76BDr - chr3L 19544293 intergenic l(3)76BDr -,CG9279 - chr3L 19544344 3` UTR l(3)76BDr - chr3L_4_19540001 chr3L_19540001 RAL-727 1583 chr3L 19646193 19646224 chr3L 19646295 19646327 27 102 5.5 3.0 4.2 5.2 134 chr3L 19646193 intergenic not near genes chr3L 19646260 intergenic not near genes chr3L 19646327 intergenic not near genes chr3L_27_19645001 chr3L_19645001 RAL-727 1584 chr3L 19792359 19792375 chr3L 19792454 19792470 10 95 14.0 8.5 11.2 0.8 111 chr3L 19792359 intron,intron CG42637 -,Gyc76C - chr3L 19792414 intron,intron CG42637 -,Gyc76C - chr3L 19792470 intron,intron CG42637 -,Gyc76C - chr3L_10_19790001 chr3L_19790001 RAL-727 1585 chr3L 19820298 19820315 chr3L 19827847 19827864 412 5 7549 5.5 1.5 3.5 1.1 7566 chr3L 19820298 intron Deaf1 + chr3L 19824081 intron Deaf1 + chr3L 19827864 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-727 1586 chr3L 19848503 19848528 chr3L 19857692 19857719 roo 5 9190 5.0 2.0 3.5 1.1 9216 chr3L 19848503 intron Papss + chr3L 19853111 intron Papss + chr3L 19857719 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-727 1587 chr3L 19861824 19861851 chr3L 19863612 19863639 S-element 10 1787 5.0 3.0 4.0 2.0 1815 chr3L 19861824 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_10_19860001 chr3L_19860001 RAL-727 1588 chr3L 19933540 19933544 chr3L 19934362 19934366 4 822 7.0 7.0 7.0 0.5 826 chr3L 19933540 intergenic CR45678 + chr3L 19933953 5` UTR CR45678 + chr3L 19934366 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-727 1589 chr3L 19933545 19933554 chr3L 19934360 19934376 4 818 5.0 6.0 5.5 0.6 831 chr3L 19933545 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934376 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-727 1590 chr3L 19935926 19935956 chr3L 19936160 19936181 15 232 3.0 4.0 3.5 3.3 255 chr3L 19935926 intergenic not near genes chr3L 19936054 intergenic not near genes chr3L 19936181 intergenic not near genes chr3L_15_19935001 chr3L_19935001 RAL-727 1591 chr3L 19961282 19961308 chr3L 19961493 19961518 10 209 5.0 8.5 6.8 1.3 236 chr3L 19961282 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961518 intron Ac76E + chr3L_10_19960001 chr3L_19960001 RAL-727 1592 chr3L 19962948 19962982 chr3L 19963026 19963060 16 76 1.0 5.5 3.2 3.8 112 chr3L 19962948 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963060 intron Ac76E + chr3L_16_19960001 chr3L_19960001 RAL-727 1593 chr3L 19981206 19981218 chr3L 19981286 19981298 7 80 7.5 5.0 6.2 1.0 92 chr3L 19981206 intergenic CG17732 + chr3L 19981252 intergenic CG17732 + chr3L 19981298 intergenic CG17732 + chr3L_7_19980001 chr3L_19980001 RAL-727 1594 chr3L 19981220 19981236 chr3L 19981285 19981316 6 78 3.5 5.0 4.2 1.2 96 chr3L 19981220 intergenic CG17732 + chr3L 19981268 intergenic CG17732 + chr3L 19981316 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-727 1595 chr3L 20113656 20113690 chr3L 20122913 20122947 roo 15 9257 6.5 4.5 5.5 2.3 9291 chr3L 20113656 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122947 intergenic not near genes chr3L_15_20115001 chr3L_20115001 RAL-727 1596 chr3L 20257346 20257361 chr3L 20258454 20258481 pogo 13 1119 3.0 5.5 4.2 2.5 1135 chr3L 20257346 intron rdgC + chr3L 20257914 intron rdgC + chr3L 20258481 intron rdgC + chr3L_13_20255001 chr3L_20255001 RAL-727 1597 chr3L 20345607 20345640 chr3L 20345686 20345721 23 80 6.5 5.0 5.8 3.4 114 chr3L 20345607 intergenic Rbbp5 - chr3L 20345664 intergenic Rbbp5 - chr3L 20345721 intergenic Rbbp5 - chr3L_23_20345001 chr3L_20345001 RAL-727 1598 chr3L 20386939 20386972 chr3L 20387041 20387074 14 102 3.0 4.0 3.5 3.1 135 chr3L 20386939 intron fbl + chr3L 20387006 intron fbl + chr3L 20387074 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-727 1599 chr3L 20423020 20423044 chr3L 20423227 20423259 12 207 4.5 5.0 4.8 2.1 239 chr3L 20423020 exon zye + chr3L 20423140 exon zye + chr3L 20423259 exon zye + chr3L_12_20420001 chr3L_20420001 RAL-727 1600 chr3L 20444816 20444850 chr3L 20444939 20444973 18 123 5.0 3.0 4.0 3.6 157 chr3L 20444816 intron CG5910 + chr3L 20444894 intron CG5910 + chr3L 20444973 intron CG5910 + chr3L_18_20440001 chr3L_20440001 RAL-727 1601 chr3L 20447704 20447723 chr3L 20447779 20447779 4 72 7.5 0.5 4.0 0.8 75 chr3L 20447704 intron CG5910 + chr3L 20447742 intron CG5910 + chr3L 20447779 intron CG5910 + chr3L_4_20445001 chr3L_20445001 RAL-727 1602 chr3L 20462587 20462600 chr3L 20462668 20462681 7 79 7.5 0.0 3.8 1.5 94 chr3L 20462587 intron atk - chr3L 20462634 intron atk - chr3L 20462681 intron atk - chr3L_7_20460001 chr3L_20460001 RAL-727 1603 chr3L 20462212 20462247 chr3L 20467475 20467510 16 5264 29.0 35.5 32.2 0.5 5298 chr3L 20462212 intron,3` UTR atk -,mag + chr3L 20464861 5` UTR,exon atk -,CG42764 - chr3L 20467510 intron CG5955 + chr3L_16_20460001 chr3L_20460001 RAL-727 1604 chr3L 20476754 20476784 chr3L 20484353 20484383 springer 15 7599 8.0 8.5 8.2 1.6 7629 chr3L 20476754 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_15_20480001 chr3L_20480001 RAL-727 1605 chr3L 20487661 20487672 chr3L 20488112 20488123 INE-1 7 451 15.5 2.5 9.0 0.7 462 chr3L 20487661 intron ZnT77C - chr3L 20487892 intron ZnT77C - chr3L 20488123 intron ZnT77C - chr3L_7_20485001 chr3L_20485001 RAL-727 1606 chr3L 20525228 20525228 chr3L 24821492 24821492 6 4296264 9.0 16.5 12.8 0.4 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-727 1607 chr3L 20548369 20548385 chr3L 20548458 20548472 4 87 4.0 9.0 6.5 0.5 103 chr3L 20548369 intergenic not near genes chr3L 20548420 intergenic not near genes chr3L 20548472 intergenic not near genes chr3L_4_20545001 chr3L_20545001 RAL-727 1608 chr3L 20590068 20590074 chr3L 20590605 20590606 412 4 536 9.0 2.5 5.8 0.6 538 chr3L 20590068 intergenic not near genes chr3L 20590337 intergenic not near genes chr3L 20590606 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-727 1609 chr3L 20699904 20699929 chr3L 20699984 20700000 5 76 4.0 3.5 3.8 1.0 96 chr3L 20699904 intergenic not near genes chr3L 20699952 intergenic not near genes chr3L 20700000 intergenic not near genes chr3L_5_20695001 chr3L_20695001 RAL-727 1610 chr3L 20710764 20710793 chr3L 20710841 20710870 12 76 3.5 7.0 5.2 1.9 106 chr3L 20710764 intergenic not near genes chr3L 20710817 intergenic not near genes chr3L 20710870 intergenic not near genes chr3L_12_20710001 chr3L_20710001 RAL-727 1611 chr3L 20849272 20849293 chr3L 20849351 20849372 9 79 5.0 2.0 3.5 2.0 100 chr3L 20849272 intron CG32432 - chr3L 20849322 intron CG32432 - chr3L 20849372 intron CG32432 - chr3L_9_20845001 chr3L_20845001 RAL-727 1612 chr3L 20913750 20913772 chr3L 20913831 20913853 14 80 4.5 4.5 4.5 2.5 103 chr3L 20913750 intergenic CR43930 - chr3L 20913802 intergenic CR43930 - chr3L 20913853 intergenic CR43930 - chr3L_14_20910001 chr3L_20910001 RAL-727 1613 chr3L 20913775 20913782 chr3L 20913830 20913864 8 72 2.5 4.5 3.5 1.8 89 chr3L 20913775 intergenic CR43930 - chr3L 20913820 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-727 1614 chr3L 21014922 21014947 chr3L 21023396 21023404 Tirant 9 8473 7.5 2.5 5.0 1.5 8482 chr3L 21014922 intron skd - chr3L 21019163 intron skd - chr3L 21023404 intron skd - chr3L_9_21015001 chr3L_21015001 RAL-727 1615 chr3L 21082214 21082223 chr3L 21082292 21082301 5 78 6.5 7.5 7.0 0.6 87 chr3L 21082214 intron ko - chr3L 21082258 intron ko - chr3L 21082301 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-727 1616 chr3L 21082225 21082241 chr3L 21082289 21082319 5 73 3.5 6.5 5.0 0.8 94 chr3L 21082225 intron ko - chr3L 21082272 intron ko - chr3L 21082319 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-727 1617 chr3L 21130566 21130599 chr3L 21130760 21130782 10 193 5.5 3.5 4.5 1.8 216 chr3L 21130566 intron ko - chr3L 21130674 intron ko - chr3L 21130782 intron ko - chr3L_10_21130001 chr3L_21130001 RAL-727 1618 chr3L 21151863 21151897 chr3L 21156947 21156981 flea 14 5084 2.0 1.0 1.5 5.6 5118 chr3L 21151863 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_14_21150001 chr3L_21150001 RAL-727 1619 chr3L 21243754 21243771 chr3L 21251312 21251314 412 5 7558 2.0 4.5 3.2 1.2 7560 chr3L 21243754 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251314 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-727 1620 chr3L 21294841 21294872 chr3L 21294931 21294963 16 90 2.0 3.0 2.5 4.6 122 chr3L 21294841 5` UTR Cpr78Cb + chr3L 21294902 5` UTR Cpr78Cb + chr3L 21294963 5` UTR Cpr78Cb + chr3L_16_21290001 chr3L_21290001 RAL-727 1621 chr3L 21303710 21303736 chr3L 21303797 21303822 14 87 3.0 7.0 5.0 2.3 112 chr3L 21303710 intron CG11309 - chr3L 21303766 intron CG11309 - chr3L 21303822 intron CG11309 - chr3L_14_21300001 chr3L_21300001 RAL-727 1622 chr3L 21306145 21306180 chr3L 21315304 21315339 roo 16 9159 5.0 4.0 4.5 2.9 9194 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_16_21310001 chr3L_21310001 RAL-727 1623 chr3L 21361735 21361749 chr3L 21362679 21362703 G2 9 951 4.0 3.5 3.8 1.9 968 chr3L 21361735 intergenic not near genes chr3L 21362219 intergenic not near genes chr3L 21362703 intergenic not near genes chr3L_9_21360001 chr3L_21360001 RAL-727 1624 chr3L 21372721 21372753 chr3L 21379229 21379261 McClintock 12 6508 3.5 3.5 3.5 2.7 6540 chr3L 21372721 intergenic not near genes chr3L 21375991 intergenic not near genes chr3L 21379261 intergenic not near genes chr3L_12_21375001 chr3L_21375001 RAL-727 1625 chr3L 21406998 21407023 chr3L 21407077 21407100 14 78 9.0 3.0 6.0 2.0 102 chr3L 21406998 intron rgn + chr3L 21407049 intron rgn + chr3L 21407100 intron rgn + chr3L_14_21405001 chr3L_21405001 RAL-727 1626 chr3L 4341331 4341333 chr3L 21448026 21448026 5 17106693 26.0 25.0 25.5 0.2 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-727 1627 chr3L 4341332 4341333 chr3L 21448027 21448027 7 17106695 26.0 25.0 25.5 0.3 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_7_12890001 chr3L_12890001 RAL-727 1628 chr3L 21498836 21498869 chr3L 21500472 21500494 1360 9 1630 2.5 7.5 5.0 1.5 1658 chr3L 21498836 intron Glg1 - chr3L 21499665 intron Glg1 - chr3L 21500494 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-727 1629 chr3L 21639199 21639218 chr3L 21639278 21639297 12 79 7.5 5.5 6.5 1.6 98 chr3L 21639199 intergenic CG32444 +,CG32445 + chr3L 21639248 intergenic CG32445 +,CG32444 + chr3L 21639297 intergenic CG32445 +,CG32444 + chr3L_12_21635001 chr3L_21635001 RAL-727 1630 chr3L 21749325 21749351 chr3L 21754473 21754501 Doc 4 5152 4.5 7.0 5.8 0.6 5176 chr3L 21749325 intron Syn1 - chr3L 21751913 intron Syn1 - chr3L 21754501 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-727 1631 chr3L 21769619 21769630 chr3L 21769697 21769706 7 75 7.5 9.0 8.2 0.8 87 chr3L 21769619 intron,intron Syn1 -,CG42689 + chr3L 21769662 intron,intron Syn1 -,CG42689 + chr3L 21769706 intron,intron Syn1 -,CG42689 + chr3L_7_21765001 chr3L_21765001 RAL-727 1632 chr3L 21769631 21769636 chr3L 21769680 21769704 5 68 3.0 4.0 3.5 1.1 73 chr3L 21769631 intron,intron Syn1 -,CG42689 + chr3L 21769668 intron,intron Syn1 -,CG42689 + chr3L 21769704 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-727 1633 chr3L 21771900 21771926 chr3L 21772011 21772032 12 110 10.5 9.5 10.0 1.1 132 chr3L 21771900 intron CG42689 + chr3L 21771966 intron CG42689 + chr3L 21772032 intron CG42689 + chr3L_12_21770001 chr3L_21770001 RAL-727 1634 chr3L 21773103 21773107 chr3L 22847702 22847706 4 1074599 10.0 7.0 8.5 0.4 1074603 chr3L 21773103 intron CG42689 + chr3L 22310404 intron Ten-m - chr3L 22847706 intergenic not near genes chr3L_4_22310001 chr3L_22310001 RAL-727 1635 chr3L 21776687 21776703 chr3L 21776771 21776790 5 86 1.0 5.0 3.0 1.2 103 chr3L 21776687 intron,intron CG42689 +,CG42552 + chr3L 21776738 intron,intron CG42689 +,CG42552 + chr3L 21776790 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-727 1636 chr3L 21849500 21849531 chr3L 21849582 21849612 11 81 3.0 6.0 4.5 2.0 112 chr3L 21849500 intron mub + chr3L 21849556 intron mub + chr3L 21849612 intron mub + chr3L_11_21845001 chr3L_21845001 RAL-727 1637 chr3L 21852262 21852280 chr3L 21852349 21852373 8 92 7.5 3.5 5.5 1.2 111 chr3L 21852262 intron mub + chr3L 21852318 intron mub + chr3L 21852373 intron mub + chr3L_8_21850001 chr3L_21850001 RAL-727 1638 chr3L 22099683 22099704 chr3L 22105869 22105890 3S18 9 6186 7.5 4.5 6.0 1.3 6207 chr3L 22099683 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-727 1639 chr3L 22130499 22130520 chr3L 22130645 22130666 8 146 2.0 1.5 1.8 2.9 167 chr3L 22130499 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130666 intergenic not near genes chr3L_8_22130001 chr3L_22130001 RAL-727 1640 chr3L 22137532 22137555 chr3L 22137602 22137632 12 76 4.0 4.0 4.0 2.4 100 chr3L 22137532 intron olf413 + chr3L 22137582 intron olf413 + chr3L 22137632 intron olf413 + chr3L_12_22135001 chr3L_22135001 RAL-727 1641 chr3L 22314885 22314910 chr3L 22315099 22315124 4 214 1.0 3.0 2.0 1.3 239 chr3L 22314885 intron Ten-m - chr3L 22315004 intron Ten-m - chr3L 22315124 intron Ten-m - chr3L_4_22315001 chr3L_22315001 RAL-727 1642 chr3L 22447196 22447231 chr3L 22447287 22447322 9 89 3.0 6.0 4.5 1.6 126 chr3L 22447196 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-727 1643 chr3L 22555772 22555793 chr3L 22563242 22563242 blood 5 7465 2.5 1.0 1.8 1.8 7470 chr3L 22555772 intergenic not near genes chr3L 22559507 intergenic not near genes chr3L 22563242 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-727 1644 chr3L 22577618 22577647 chr3L 22582404 22582435 Doc 8 4786 1.5 3.0 2.2 2.5 4817 chr3L 22577618 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-727 1645 chr3L 22590788 22590811 chr3L 22590883 22590910 11 97 2.0 3.0 2.5 3.1 122 chr3L 22590788 intron CG14459 - chr3L 22590849 intron CG14459 - chr3L 22590910 intron CG14459 - chr3L_11_22590001 chr3L_22590001 RAL-727 1646 chr3L 22617190 22617222 chr3L 22624642 22624674 blood 15 7451 3.5 3.0 3.2 3.6 7484 chr3L 22617190 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_15_22620001 chr3L_22620001 RAL-727 1647 chr3L 22663193 22663223 chr3L 22663293 22663314 17 97 3.0 2.0 2.5 4.9 121 chr3L 22663193 intergenic not near genes chr3L 22663254 intergenic not near genes chr3L 22663314 intergenic not near genes chr3L_17_22660001 chr3L_22660001 RAL-727 1648 chr3L 22761387 22761405 chr3L 22766821 22766839 Ivk 14 5434 9.5 3.0 6.2 1.9 5452 chr3L 22761387 intron SPoCk + chr3L 22764113 intron SPoCk + chr3L 22766839 intron SPoCk + chr3L_14_22760001 chr3L_22760001 RAL-727 1649 chr3L 22761415 22761419 chr3L 22766820 22766853 Ivk 6 5428 5.5 3.0 4.2 1.2 5438 chr3L 22761415 intron SPoCk + chr3L 22764134 intron SPoCk + chr3L 22766853 intron SPoCk + chr3L_6_22760001 chr3L_22760001 RAL-727 1650 chr3L 22786065 22786083 chr3L 22788503 22788520 8 2437 36.0 43.0 39.5 0.2 2455 chr3L 22786065 3` UTR SPoCk + chr3L 22787292 3` UTR SPoCk + chr3L 22788520 5` UTR CG14448 + chr3L_8_22785001 chr3L_22785001 RAL-727 1651 chr3L 22786063 22786098 chr3L 22788521 22788535 10 2446 42.0 36.5 39.2 0.2 2472 chr3L 22786063 3` UTR SPoCk + chr3L 22787299 3` UTR SPoCk + chr3L 22788535 exon CG14448 + chr3L_10_22785001 chr3L_22785001 RAL-727 1652 chr3L 22865983 22866012 chr3L 22867113 22867145 Doc 13 1130 8.0 6.5 7.2 1.6 1162 chr3L 22865983 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867145 intron CG33170 + chr3L_13_22865001 chr3L_22865001 RAL-727 1653 chr3L 22897197 22897226 chr3L 22897277 22897309 8 76 7.5 5.0 6.2 1.1 112 chr3L 22897197 intergenic not near genes chr3L 22897253 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_8_22895001 chr3L_22895001 RAL-727 1654 chr3L 20525228 20525229 chr3L 22908066 22908066 4 2382837 9.0 37.5 23.2 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-727 1655 chr3L 22989869 22989888 chr3L 22996835 22996862 297 16 6971 6.0 4.0 5.0 2.7 6993 chr3L 22989869 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996862 intergenic not near genes chr3L_16_22990001 chr3L_22990001 RAL-727 1656 chr3L 23319654 23319688 chr3L 23319745 23319779 24 90 7.5 5.5 6.5 3.2 125 chr3L 23319654 intron alpha-Cat - chr3L 23319716 intron alpha-Cat - chr3L 23319779 intron alpha-Cat - chr3L_24_23315001 chr3L_23315001 RAL-727 1657 chr3L 23824027 23824047 chr3L 23824437 23824460 6 412 3.5 2.0 2.8 1.6 433 chr3L 23824027 intergenic not near genes chr3L 23824244 intergenic not near genes chr3L 23824460 intergenic not near genes chr3L_6_23820001 chr3L_23820001 RAL-727 1658 chr3L 24168793 24168821 chr3L 24176121 24176148 ZAM 5 7323 1.0 6.5 3.8 1.0 7355 chr3L 24168793 intron Snap25 + chr3L 24172470 intron Snap25 + chr3L 24176148 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-727 1659 chr3L 24241953 24241984 chr3L 24242041 24242055 7 82 3.0 2.5 2.8 1.8 102 chr3L 24241953 intron Snap25 + chr3L 24242004 intron Snap25 + chr3L 24242055 intron Snap25 + chr3L_7_24240001 chr3L_24240001 RAL-727 1660 chr3L 24791903 24791925 chr3L 24796682 24796704 Doc 17 4779 2.5 3.0 2.8 4.5 4801 chr3L 24791903 intergenic not near genes chr3L 24794304 intergenic not near genes chr3L 24796704 intergenic not near genes chr3L_17_24790001 chr3L_24790001 RAL-727 1661 chr3L 18198930 18198930 chr3L 24821492 24821492 8 6622562 19.0 16.5 17.8 0.4 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_8_21510001 chr3L_21510001 RAL-727 1662 chr3L 18198931 18198931 chr3L 24821493 24821493 4 6622562 18.5 15.5 17.0 0.2 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-727 1663 chr3L 20525229 20525230 chr3L 24821493 24821493 6 4296263 9.0 15.5 12.2 0.5 4296264 chr3L 20525229 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-727 1664 chr3L 23289000 23289022 chr3L 25843681 25843703 10 2554682 30.0 23.0 26.5 0.4 2554703 chr3L 23289000 intergenic not near genes chr3L 24566352 intergenic not near genes chr3L 25843703 intron CG40178 - chr3L_10_24565001 chr3L_24565001 RAL-727 1665 chr3L 25975451 25975462 chr3L 25975536 25975547 7 85 5.5 6.0 5.8 1.0 96 chr3L 25975451 intron CG40178 - chr3L 25975499 intron CG40178 - chr3L 25975547 intron CG40178 - chr3L_7_25975001 chr3L_25975001 RAL-727 1666 chr3L 26008769 26008791 chr3L 26008916 26008938 5 147 5.0 5.0 5.0 0.8 169 chr3L 26008769 intron CG40178 - chr3L 26008854 intron CG40178 - chr3L 26008938 intron CG40178 - chr3L_5_26005001 chr3L_26005001 RAL-727 1667 chr3L 26029453 26029465 chr3L 26030171 26030183 G3 8 716 0.0 2.5 1.2 3.6 730 chr3L 26029453 intergenic not near genes chr3L 26029818 intergenic not near genes chr3L 26030183 intergenic not near genes chr3L_8_26025001 chr3L_26025001 RAL-727 1668 chr3L 18250974 18250975 chr3L 26170890 26170891 4 7919916 19.5 8.0 13.8 0.3 7919917 chr3L 18250974 intergenic not near genes chr3L 22210932 intron olf413 + chr3L 26170891 intergenic not near genes chr3L_4_22210001 chr3L_22210001 RAL-727 1669 chr3R 1867175 1867175 chr3R 1954887 1954915 Doc3-element 4 87722 6.5 0.5 3.5 0.9 87740 chr3R 1867175 intron CG42623 + chr3R 1911045 intron CG42623 + chr3R 1954915 intergenic not near genes chr3R_4_1910001 chr3R_1910001 RAL-727 1670 chr3R 2534133 2534167 chr3R 2541700 2541736 10 7563 9.0 16.5 12.8 0.7 7603 chr3R 2534133 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_10_2535001 chr3R_2535001 RAL-727 1671 chr3R 3181269 3181275 chr3R 3181352 3181358 4 83 14.5 17.0 15.8 0.2 89 chr3R 3181269 intron CG42617 - chr3R 3181314 intron CG42617 - chr3R 3181358 intron CG42617 - chr3R_4_3180001 chr3R_3180001 RAL-727 1672 chr3R 4063809 4063828 chr3R 4069089 4069106 8 5278 12.5 20.0 16.2 0.5 5297 chr3R 4063809 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_8_4065001 chr3R_4065001 RAL-727 1673 chr3R 4105039 4105069 chr3R 4110243 4110273 copia 10 5204 2.0 2.5 2.2 3.1 5234 chr3R 4105039 intergenic not near genes chr3R 4107656 intergenic not near genes chr3R 4110273 intergenic not near genes chr3R_10_4105001 chr3R_4105001 RAL-727 1674 chr3R 4132916 4132926 chr3R 4133070 4133080 9 154 3.5 2.5 3.0 2.2 164 chr3R 4132916 5` UTR Gfat1 + chr3R 4132998 intron Gfat1 + chr3R 4133080 intron Gfat1 + chr3R_9_4130001 chr3R_4130001 RAL-727 1675 chr3R 4206072 4206104 chr3R 4211647 4211679 mdg3 18 5575 3.0 5.5 4.2 3.5 5607 chr3R 4206072 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_18_4205001 chr3R_4205001 RAL-727 1676 chr3R 4366756 4366791 chr3R 4375138 4375174 roo 10 8381 7.0 3.0 5.0 1.7 8418 chr3R 4366756 3` UTR CG1090 + chr3R 4370965 intergenic not near genes chr3R 4375174 5` UTR CR44922 + chr3R_10_4370001 chr3R_4370001 RAL-727 1677 chr3R 4408408 4408428 chr3R 4412712 4412731 Juan 18 4303 12.5 4.5 8.5 1.9 4323 chr3R 4408408 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412731 intron CG32944 - chr3R_18_4410001 chr3R_4410001 RAL-727 1678 chr3R 4408430 4408442 chr3R 4412708 4412746 Juan 8 4299 6.5 4.5 5.5 1.2 4316 chr3R 4408430 intron CG32944 - chr3R 4410588 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-727 1679 chr3R 4609546 4609582 chr3R 4610710 4610744 1360 23 1163 6.0 6.5 6.2 3.2 1198 chr3R 4609546 intergenic not near genes chr3R 4610145 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_23_4610001 chr3R_4610001 RAL-727 1680 chr3R 4658034 4658058 chr3R 4658117 4658128 4 80 3.0 3.5 3.2 1.0 94 chr3R 4658034 intergenic spartin + chr3R 4658081 intergenic spartin + chr3R 4658128 intergenic spartin + chr3R_4_4655001 chr3R_4655001 RAL-727 1681 chr3R 4683179 4683207 chr3R 4684938 4684956 S-element 9 1758 7.5 2.0 4.8 1.6 1777 chr3R 4683179 intron CG43427 + chr3R 4684068 intron CG43427 + chr3R 4684956 intron CG43427 + chr3R_9_4680001 chr3R_4680001 RAL-727 1682 chr3R 4753240 4753278 chr3R 4757543 4757581 F-element 9 4297 2.0 5.0 3.5 2.0 4341 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757581 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-727 1683 chr3R 4759716 4759753 chr3R 4761213 4761240 hopper2 21 1495 5.0 14.0 9.5 2.0 1524 chr3R 4759716 intron,intron atms +,CG44098 - chr3R 4760478 intron,intron atms +,CG44098 - chr3R 4761240 intron,intron atms +,CG44098 - chr3R_21_4760001 chr3R_4760001 RAL-727 1684 chr3R 4769168 4769188 chr3R 4769246 4769266 9 77 4.5 4.5 4.5 1.6 98 chr3R 4769168 intron,intron atms +,CG44098 - chr3R 4769217 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-727 1685 chr3R 4786704 4786712 chr3R 4786793 4786801 4 88 1.0 6.0 3.5 0.9 97 chr3R 4786704 3` UTR ctrip - chr3R 4786752 3` UTR ctrip - chr3R 4786801 3` UTR ctrip - chr3R_4_4785001 chr3R_4785001 RAL-727 1686 chr3R 4887478 4887508 chr3R 4894855 4894863 rover 9 7374 3.5 1.5 2.5 2.6 7385 chr3R 4887478 intergenic not near genes chr3R 4891170 intergenic not near genes chr3R 4894863 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-727 1687 chr3R 4896293 4896324 chr3R 4896386 4896417 17 92 3.5 4.0 3.8 3.5 124 chr3R 4896293 intergenic CR45580 + chr3R 4896355 intergenic CR45580 + chr3R 4896417 5` UTR CR45580 + chr3R_17_4895001 chr3R_4895001 RAL-727 1688 chr3R 4904877 4904890 chr3R 18214682 18214691 8 13309804 22.5 10.5 16.5 0.5 13309814 chr3R 4904877 intergenic not near genes chr3R 11559784 3` UTR CG10898 + chr3R 18214691 3` UTR CG7985 + chr3R_8_11555001 chr3R_11555001 RAL-727 1689 chr3R 4920381 4920406 chr3R 4920466 4920491 19 84 5.5 7.0 6.2 2.6 110 chr3R 4920381 intron Cdep + chr3R 4920436 intron Cdep + chr3R 4920491 intron Cdep + chr3R_19_4920001 chr3R_4920001 RAL-727 1690 chr3R 4943614 4943621 chr3R 4943719 4943726 5 105 10.5 6.0 8.2 0.5 112 chr3R 4943614 intron Cdep + chr3R 4943670 intron Cdep + chr3R 4943726 intron Cdep + chr3R_5_4940001 chr3R_4940001 RAL-727 1691 chr3R 4966012 4966032 chr3R 4966104 4966124 6 91 3.0 5.0 4.0 1.2 112 chr3R 4966012 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966124 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-727 1692 chr3R 5000289 5000319 chr3R 5000396 5000414 14 105 2.5 4.5 3.5 3.1 125 chr3R 5000289 intron CG2022 - chr3R 5000352 intron CG2022 - chr3R 5000414 intron CG2022 - chr3R_14_5000001 chr3R_5000001 RAL-727 1693 chr3R 5045856 5045874 chr3R 5052958 5052976 HMS-Beagle 7 7102 2.0 5.0 3.5 1.6 7120 chr3R 5045856 intron CR43635 - chr3R 5049416 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-727 1694 chr3R 5067980 5068013 chr3R 5073497 5073530 mdg3 24 5516 5.5 5.5 5.5 3.7 5550 chr3R 5067980 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073530 intergenic not near genes chr3R_24_5070001 chr3R_5070001 RAL-727 1695 chr3R 5191370 5191396 chr3R 5191649 5191673 5 279 46.0 51.0 48.5 0.1 303 chr3R 5191370 intron cno - chr3R 5191522 intron cno - chr3R 5191673 intron cno - chr3R_5_5190001 chr3R_5190001 RAL-727 1696 chr3R 4148500 4148500 chr3R 5245573 5245592 4 1097079 11.5 30.5 21.0 0.2 1097092 chr3R 4148500 intergenic not near genes chr3R 4697046 intron CG43427 + chr3R 5245592 intron CG12163 - chr3R_4_4695001 chr3R_4695001 RAL-727 1697 chr3R 5250879 5250916 chr3R 5250991 5251026 19 109 9.5 5.0 7.2 2.3 147 chr3R 5250879 intron CG12163 - chr3R 5250952 intron CG12163 - chr3R 5251026 intron CG12163 - chr3R_19_5250001 chr3R_5250001 RAL-727 1698 chr3R 5278087 5278123 chr3R 5278168 5278204 26 79 6.0 7.0 6.5 3.5 117 chr3R 5278087 intron mtd - chr3R 5278146 intron mtd - chr3R 5278204 intron mtd - chr3R_26_5275001 chr3R_5275001 RAL-727 1699 chr3R 5319164 5319191 chr3R 5319353 5319385 16 194 5.0 6.5 5.8 2.4 221 chr3R 5319164 intron mtd - chr3R 5319274 intron mtd - chr3R 5319385 intron mtd - chr3R_16_5315001 chr3R_5315001 RAL-727 1700 chr3R 5338400 5338415 chr3R 5343577 5343592 Rt1c 6 5177 7.5 10.0 8.8 0.6 5192 chr3R 5338400 intron mtd - chr3R 5340996 intron mtd - chr3R 5343592 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-727 1701 chr3R 5338417 5338429 chr3R 5343567 5343606 Rt1c 7 5172 6.0 5.0 5.5 1.1 5189 chr3R 5338417 intron mtd - chr3R 5341012 intron mtd - chr3R 5343606 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-727 1702 chr3R 5385980 5386007 chr3R 5386151 5386178 10 170 1.5 7.5 4.5 1.8 198 chr3R 5385980 intron kkv - chr3R 5386079 intron kkv - chr3R 5386178 intron kkv - chr3R_10_5385001 chr3R_5385001 RAL-727 1703 chr3R 5445959 5445994 chr3R 5452419 5452454 Burdock 21 6459 3.0 2.5 2.8 5.5 6495 chr3R 5445959 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_21_5445001 chr3R_5445001 RAL-727 1704 chr3R 5595211 5595244 chr3R 5595289 5595322 14 78 4.0 3.5 3.8 2.9 111 chr3R 5595211 3` UTR Vha26 + chr3R 5595266 3` UTR Vha26 + chr3R 5595322 3` UTR Vha26 + chr3R_14_5595001 chr3R_5595001 RAL-727 1705 chr3R 5680784 5680819 chr3R 5680868 5680902 14 83 6.5 7.5 7.0 1.8 118 chr3R 5680784 3` UTR Rab23 - chr3R 5680843 3` UTR Rab23 - chr3R 5680902 3` UTR Rab23 - chr3R_14_5680001 chr3R_5680001 RAL-727 1706 chr3R 5688783 5688814 chr3R 5688904 5688932 11 119 4.0 3.5 3.8 2.3 149 chr3R 5688783 intron plx + chr3R 5688858 intron plx + chr3R 5688932 intron plx + chr3R_11_5685001 chr3R_5685001 RAL-727 1707 chr3R 5746020 5746044 chr3R 5746261 5746262 pogo 6 236 5.5 6.0 5.8 0.9 242 chr3R 5746020 3` UTR Madm + chr3R 5746141 3` UTR Madm + chr3R 5746262 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-727 1708 chr3R 5747013 5747049 chr3R 5753204 5753240 diver 19 6190 4.0 4.5 4.2 3.7 6227 chr3R 5747013 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753240 intergenic CG2091 - chr3R_19_5750001 chr3R_5750001 RAL-727 1709 chr3R 5769233 5769261 chr3R 5769331 5769358 10 98 4.5 1.0 2.8 2.6 125 chr3R 5769233 intron CG2082 - chr3R 5769296 intron CG2082 - chr3R 5769358 intron CG2082 - chr3R_10_5765001 chr3R_5765001 RAL-727 1710 chr3R 5809115 5809140 chr3R 5809365 5809389 pogo 6 249 4.0 4.5 4.2 1.2 274 chr3R 5809115 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809389 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-727 1711 chr3R 5822381 5822404 chr3R 5823548 5823571 1360 13 1167 5.0 7.0 6.0 1.9 1190 chr3R 5822381 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-727 1712 chr3R 5927563 5927582 chr3R 5927801 5927820 pogo 13 237 3.0 7.5 5.2 2.1 257 chr3R 5927563 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927820 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-727 1713 chr3R 5988907 5988932 chr3R 5989108 5989133 13 201 2.5 4.0 3.2 3.1 226 chr3R 5988907 intergenic CR44927 + chr3R 5989020 intergenic CR44927 + chr3R 5989133 intergenic CR44927 + chr3R_13_5985001 chr3R_5985001 RAL-727 1714 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 11 8476 2.5 3.5 3.0 2.8 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_11_6020001 chr3R_6020001 RAL-727 1715 chr3R 6113720 6113736 chr3R 6114856 6114872 9 1136 29.0 25.5 27.2 0.3 1152 chr3R 6113720 intergenic not near genes chr3R 6114296 intergenic not near genes chr3R 6114872 intergenic not near genes chr3R_9_6110001 chr3R_6110001 RAL-727 1716 chr3R 6121168 6121185 chr3R 6121381 6121403 BS 9 217 0.0 4.5 2.2 2.8 235 chr3R 6121168 intergenic not near genes chr3R 6121286 intergenic not near genes chr3R 6121403 intergenic not near genes chr3R_9_6120001 chr3R_6120001 RAL-727 1717 chr3R 6124226 6124256 chr3R 6124310 6124340 12 84 2.5 2.0 2.2 3.8 114 chr3R 6124226 3` UTR Vha14-2 + chr3R 6124283 3` UTR Vha14-2 + chr3R 6124340 3` UTR Vha14-2 + chr3R_12_6120001 chr3R_6120001 RAL-727 1718 chr3R 6158510 6158533 chr3R 6167092 6167098 Tirant 4 8578 4.5 4.5 4.5 0.7 8588 chr3R 6158510 intergenic not near genes chr3R 6162804 intergenic not near genes chr3R 6167098 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-727 1719 chr3R 6170549 6170565 chr3R 6170643 6170659 6 94 2.5 0.0 1.2 2.7 110 chr3R 6170549 intergenic CG1077 + chr3R 6170604 intergenic CG1077 + chr3R 6170659 intergenic CG1077 + chr3R_6_6170001 chr3R_6170001 RAL-727 1720 chr3R 6175172 6175207 chr3R 6182444 6182463 HMS-Beagle2 14 7270 3.0 4.0 3.5 3.1 7291 chr3R 6175172 intergenic Osi1 + chr3R 6178818 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_14_6175001 chr3R_6175001 RAL-727 1721 chr3R 6187737 6187767 chr3R 6195525 6195544 9 7780 19.0 29.0 24.0 0.4 7807 chr3R 6187737 intron NPFR + chr3R 6191640 intron NPFR + chr3R 6195544 intergenic NPFR + chr3R_9_6190001 chr3R_6190001 RAL-727 1722 chr3R 6206296 6206320 chr3R 6206497 6206497 BS 10 207 3.0 6.5 4.8 1.7 201 chr3R 6206296 exon Osi24 + chr3R 6206396 intron Osi24 + chr3R 6206497 intron Osi24 + chr3R_10_6205001 chr3R_6205001 RAL-727 1723 chr3R 6222306 6222339 chr3R 6222387 6222420 13 81 4.0 3.0 3.5 2.9 114 chr3R 6222306 intergenic not near genes chr3R 6222363 intergenic not near genes chr3R 6222420 intergenic not near genes chr3R_13_6220001 chr3R_6220001 RAL-727 1724 chr3R 6428809 6428843 chr3R 6428911 6428941 16 101 5.0 6.0 5.5 2.5 132 chr3R 6428809 intron gpp + chr3R 6428875 intron gpp + chr3R 6428941 intron gpp + chr3R_16_6425001 chr3R_6425001 RAL-727 1725 chr3R 6444814 6444847 chr3R 6444891 6444902 8 74 6.5 5.0 5.8 1.2 88 chr3R 6444814 intron gpp + chr3R 6444858 intron gpp + chr3R 6444902 intron gpp + chr3R_8_6440001 chr3R_6440001 RAL-727 1726 chr3R 6461576 6461613 chr3R 6461657 6461693 25 79 8.5 4.5 6.5 3.3 117 chr3R 6461576 intergenic not near genes chr3R 6461634 intergenic not near genes chr3R 6461693 intergenic not near genes chr3R_25_6460001 chr3R_6460001 RAL-727 1727 chr3R 6479935 6479968 chr3R 6480011 6480044 12 76 1.5 3.5 2.5 3.4 109 chr3R 6479935 intron CG15186 + chr3R 6479990 intron CG15186 + chr3R 6480044 intron CG15186 + chr3R_12_6475001 chr3R_6475001 RAL-727 1728 chr3R 6510022 6510053 chr3R 6515103 6515134 jockey 9 5080 4.0 4.0 4.0 1.8 5112 chr3R 6510022 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515134 intergenic not near genes chr3R_9_6510001 chr3R_6510001 RAL-727 1729 chr3R 6523316 6523351 chr3R 6523692 6523727 8 376 4.5 0.5 2.5 2.3 411 chr3R 6523316 intergenic not near genes chr3R 6523522 intergenic not near genes chr3R 6523727 intergenic not near genes chr3R_8_6520001 chr3R_6520001 RAL-727 1730 chr3R 6532105 6532138 chr3R 6532479 6532512 6 374 6.0 1.0 3.5 1.3 407 chr3R 6532105 intron dpr11 - chr3R 6532308 intron dpr11 - chr3R 6532512 intron dpr11 - chr3R_6_6530001 chr3R_6530001 RAL-727 1731 chr3R 6534033 6534042 chr3R 6534121 6534130 6 88 0.0 8.0 4.0 1.2 97 chr3R 6534033 intron dpr11 - chr3R 6534082 intron dpr11 - chr3R 6534130 intron dpr11 - chr3R_6_6530001 chr3R_6530001 RAL-727 1732 chr3R 6561952 6561974 chr3R 6562036 6562058 9 84 4.0 4.0 4.0 1.8 106 chr3R 6561952 intron dpr11 - chr3R 6562005 intron dpr11 - chr3R 6562058 intron dpr11 - chr3R_9_6560001 chr3R_6560001 RAL-727 1733 chr3R 6689336 6689371 chr3R 6689418 6689453 28 80 4.5 2.5 3.5 6.2 117 chr3R 6689336 intergenic Ccp84Af - chr3R 6689394 intergenic Ccp84Af - chr3R 6689453 intergenic Ccp84Af - chr3R_28_6685001 chr3R_6685001 RAL-727 1734 chr3R 6705685 6705719 chr3R 6705909 6705943 15 224 4.0 4.5 4.2 2.9 258 chr3R 6705685 intergenic not near genes chr3R 6705814 intergenic not near genes chr3R 6705943 intergenic not near genes chr3R_15_6705001 chr3R_6705001 RAL-727 1735 chr3R 6737501 6737532 chr3R 6739288 6739302 Doc 13 1785 3.0 3.5 3.2 3.1 1801 chr3R 6737501 intron pb - chr3R 6738402 intron pb - chr3R 6739302 intron pb - chr3R_13_6735001 chr3R_6735001 RAL-727 1736 chr3R 6856383 6856391 chr3R 6856500 6856508 4 117 2.5 1.0 1.8 1.4 125 chr3R 6856383 intergenic not near genes chr3R 6856446 intergenic not near genes chr3R 6856508 intergenic not near genes chr3R_4_6855001 chr3R_6855001 RAL-727 1737 chr3R 6862219 6862253 chr3R 6862306 6862340 13 87 1.0 5.0 3.0 3.2 121 chr3R 6862219 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862340 intergenic not near genes chr3R_13_6860001 chr3R_6860001 RAL-727 1738 chr3R 6866365 6866398 chr3R 6866674 6866707 14 309 6.0 6.5 6.2 1.9 342 chr3R 6866365 intergenic ftz + chr3R 6866536 intergenic ftz + chr3R 6866707 intergenic ftz + chr3R_14_6865001 chr3R_6865001 RAL-727 1739 chr3R 6918070 6918095 chr3R 6918148 6918173 8 78 4.5 4.0 4.2 1.5 103 chr3R 6918070 intron Antp - chr3R 6918122 intron Antp - chr3R 6918173 intron Antp - chr3R_8_6915001 chr3R_6915001 RAL-727 1740 chr3R 6981078 6981085 chr3R 6981323 6981330 4 244 1.5 4.5 3.0 1.0 252 chr3R 6981078 intron Antp - chr3R 6981204 intron Antp - chr3R 6981330 intron Antp - chr3R_4_6980001 chr3R_6980001 RAL-727 1741 chr3R 6988809 6988841 chr3R 6988929 6988961 10 119 4.0 6.5 5.2 1.6 152 chr3R 6988809 intron Antp - chr3R 6988885 intron Antp - chr3R 6988961 intron Antp - chr3R_10_6985001 chr3R_6985001 RAL-727 1742 chr3R 6995836 6995868 chr3R 6995940 6995970 7 104 2.0 2.0 2.0 2.3 134 chr3R 6995836 intron Antp - chr3R 6995903 intron Antp - chr3R 6995970 intron Antp - chr3R_7_6995001 chr3R_6995001 RAL-727 1743 chr3R 7026866 7026883 chr3R 7026944 7026966 6 82 8.0 2.5 5.2 1.0 100 chr3R 7026866 intergenic not near genes chr3R 7026916 intergenic not near genes chr3R 7026966 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-727 1744 chr3R 7091593 7091607 chr3R 7091676 7091701 10 92 6.5 10.5 8.5 1.1 108 chr3R 7091593 intergenic not near genes chr3R 7091647 intergenic not near genes chr3R 7091701 intergenic not near genes chr3R_10_7090001 chr3R_7090001 RAL-727 1745 chr3R 7103284 7103316 chr3R 7103359 7103364 22 73 9.0 2.5 5.8 3.2 80 chr3R 7103284 intron Alh - chr3R 7103324 intron Alh - chr3R 7103364 intron Alh - chr3R_22_7100001 chr3R_7100001 RAL-727 1746 chr3R 7126503 7126532 chr3R 7126598 7126627 11 95 3.5 3.0 3.2 2.6 124 chr3R 7126503 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126565 3` UTR CG10068 - chr3R 7126627 3` UTR CG10068 - chr3R_11_7125001 chr3R_7125001 RAL-727 1747 chr3R 7173679 7173708 chr3R 7173759 7173788 13 80 3.0 4.0 3.5 2.9 109 chr3R 7173679 intron sas + chr3R 7173734 intron sas + chr3R 7173788 intron sas + chr3R_13_7170001 chr3R_7170001 RAL-727 1748 chr3R 7355466 7355478 chr3R 7355551 7355563 4 85 0.0 4.5 2.2 1.2 97 chr3R 7355466 intergenic not near genes chr3R 7355514 intergenic not near genes chr3R 7355563 intergenic not near genes chr3R_4_7355001 chr3R_7355001 RAL-727 1749 chr3R 7387006 7387013 chr3R 7387108 7387115 6 102 3.5 5.0 4.2 1.2 109 chr3R 7387006 intergenic CR45560 + chr3R 7387060 intergenic CR45560 + chr3R 7387115 intergenic CR45560 + chr3R_6_7385001 chr3R_7385001 RAL-727 1750 chr3R 7447992 7448010 chr3R 7448070 7448088 14 78 5.5 10.5 8.0 1.6 96 chr3R 7447992 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448088 intergenic not near genes chr3R_14_7445001 chr3R_7445001 RAL-727 1751 chr3R 7492597 7492627 chr3R 7492674 7492704 10 76 3.5 2.0 2.8 2.6 107 chr3R 7492597 intron alpha-Est10 - chr3R 7492650 intron alpha-Est10 - chr3R 7492704 intron alpha-Est10 - chr3R_10_7490001 chr3R_7490001 RAL-727 1752 chr3R 7548604 7548633 chr3R 7548683 7548712 14 78 4.0 2.0 3.0 3.5 108 chr3R 7548604 intron alpha-Est1 - chr3R 7548658 intron alpha-Est1 - chr3R 7548712 intron alpha-Est1 - chr3R_14_7545001 chr3R_7545001 RAL-727 1753 chr3R 7594543 7594564 chr3R 12518596 12518596 4 4924047 7.0 17.5 12.2 0.3 4924053 chr3R 7594543 intron CG34127 - chr3R 10056570 intergenic Npc2d - chr3R 12518596 intron Octbeta3R - chr3R_4_10055001 chr3R_10055001 RAL-727 1754 chr3R 7618002 7618018 chr3R 7618094 7618110 4 90 1.5 4.5 3.0 1.0 108 chr3R 7618002 intron CG34127 - chr3R 7618056 intron CG34127 - chr3R 7618110 intron CG34127 - chr3R_4_7615001 chr3R_7615001 RAL-727 1755 chr3R 7621528 7621560 chr3R 7621619 7621649 6 90 4.5 4.5 4.5 1.1 121 chr3R 7621528 intron CG34127 - chr3R 7621588 intron CG34127 - chr3R 7621649 intron CG34127 - chr3R_6_7620001 chr3R_7620001 RAL-727 1756 chr3R 7635654 7635682 chr3R 7635737 7635763 7 83 1.0 5.5 3.2 1.7 109 chr3R 7635654 intron CG34127 - chr3R 7635708 intron CG34127 - chr3R 7635763 intron CG34127 - chr3R_7_7635001 chr3R_7635001 RAL-727 1757 chr3R 7677914 7677935 chr3R 7678027 7678048 8 113 5.5 4.5 5.0 1.3 134 chr3R 7677914 intron Nlg1 + chr3R 7677981 intron Nlg1 + chr3R 7678048 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-727 1758 chr3R 7677936 7677945 chr3R 7678026 7678055 6 102 4.5 4.0 4.2 1.2 119 chr3R 7677936 intron Nlg1 + chr3R 7677996 intron Nlg1 + chr3R 7678055 intron Nlg1 + chr3R_6_7675001 chr3R_7675001 RAL-727 1759 chr3R 7680424 7680444 chr3R 7680506 7680526 6 76 6.0 5.0 5.5 0.9 102 chr3R 7680424 intron Nlg1 + chr3R 7680475 intron Nlg1 + chr3R 7680526 intron Nlg1 + chr3R_6_7680001 chr3R_7680001 RAL-727 1760 chr3R 7686818 7686843 chr3R 7686899 7686914 11 73 7.0 4.5 5.8 1.6 96 chr3R 7686818 intron Nlg1 + chr3R 7686866 intron Nlg1 + chr3R 7686914 intron Nlg1 + chr3R_11_7685001 chr3R_7685001 RAL-727 1761 chr3R 7694575 7694610 chr3R 7713636 7713671 invader3 9 19061 2.0 6.0 4.0 1.8 19096 chr3R 7694575 3` UTR Nlg1 + chr3R 7704123 intergenic not near genes chr3R 7713671 intergenic not near genes chr3R_9_7700001 chr3R_7700001 RAL-727 1762 chr3R 7726558 7726592 chr3R 7726639 7726673 11 81 3.0 2.0 2.5 3.1 115 chr3R 7726558 intergenic not near genes chr3R 7726616 intergenic not near genes chr3R 7726673 intergenic not near genes chr3R_11_7725001 chr3R_7725001 RAL-727 1763 chr3R 7729464 7729492 chr3R 7737402 7737430 Stalker2 11 7937 3.0 5.5 4.2 2.1 7966 chr3R 7729464 intergenic not near genes chr3R 7733447 intergenic not near genes chr3R 7737430 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-727 1764 chr3R 7760255 7760285 chr3R 7760764 7760794 15 509 2.5 7.5 5.0 2.5 539 chr3R 7760255 intron Sp7 + chr3R 7760524 intron Sp7 + chr3R 7760794 5` UTR Sp7 + chr3R_15_7760001 chr3R_7760001 RAL-727 1765 chr3R 7849642 7849678 chr3R 7850809 7850835 1360 23 1166 2.0 7.5 4.8 4.0 1193 chr3R 7849642 intron CG34384 + chr3R 7850238 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_23_7850001 chr3R_7850001 RAL-727 1766 chr3R 7973315 7973342 chr3R 7974377 7974404 1360 7 1062 5.5 4.5 5.0 1.2 1089 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974404 intergenic CD98hc - chr3R_7_7970001 chr3R_7970001 RAL-727 1767 chr3R 8040649 8040678 chr3R 8040733 8040758 8 84 3.0 2.0 2.5 2.3 109 chr3R 8040649 intergenic not near genes chr3R 8040704 intergenic not near genes chr3R 8040758 intergenic CG43060 + chr3R_8_8040001 chr3R_8040001 RAL-727 1768 chr3R 8056156 8056184 chr3R 8056306 8056318 13 147 2.5 2.0 2.2 4.1 162 chr3R 8056156 intergenic CG43060 + chr3R 8056237 intergenic CG43060 + chr3R 8056318 intergenic CG43060 + chr3R_13_8055001 chr3R_8055001 RAL-727 1769 chr3R 8094415 8094441 chr3R 8099715 8099746 Transpac 9 5304 8.5 5.5 7.0 1.1 5331 chr3R 8094415 intron CG7900 + chr3R 8097080 intron CG7900 + chr3R 8099746 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-727 1770 chr3R 8101765 8101793 chr3R 8104849 8104876 G2 7 3081 1.0 5.0 3.0 1.8 3111 chr3R 8101765 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-727 1771 chr3R 8126301 8126319 chr3R 8126386 8126404 7 84 5.5 6.0 5.8 1.0 103 chr3R 8126301 intron CG9667 - chr3R 8126352 5` UTR CG9667 - chr3R 8126404 intergenic CG9667 -,Gie + chr3R_7_8125001 chr3R_8125001 RAL-727 1772 chr3R 8207555 8207574 chr3R 8208399 8208410 F-element 4 842 7.5 4.5 6.0 0.6 855 chr3R 8207555 intergenic not near genes chr3R 8207982 intergenic not near genes chr3R 8208410 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-727 1773 chr3R 8230361 8230394 chr3R 8230445 8230478 12 82 1.5 2.5 2.0 4.0 117 chr3R 8230361 3` UTR CR45551 - chr3R 8230420 3` UTR CR45551 - chr3R 8230478 3` UTR CR45551 - chr3R_12_8230001 chr3R_8230001 RAL-727 1774 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568288 23.0 25.5 24.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-727 1775 chr3R 8403023 8403038 chr3R 8412180 8412204 roo 7 9163 7.0 3.5 5.2 1.1 9181 chr3R 8403023 intron CG45263 - chr3R 8407614 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_7_8405001 chr3R_8405001 RAL-727 1776 chr3R 8491980 8492004 chr3R 8492111 8492135 10 130 3.5 7.5 5.5 1.5 155 chr3R 8491980 intergenic not near genes chr3R 8492058 intergenic not near genes chr3R 8492135 intergenic not near genes chr3R_10_8490001 chr3R_8490001 RAL-727 1777 chr3R 8552372 8552401 chr3R 8552446 8552446 8 71 2.0 5.0 3.5 1.8 74 chr3R 8552372 intergenic Or85d + chr3R 8552409 intergenic Or85d + chr3R 8552446 intergenic Or85d + chr3R_8_8550001 chr3R_8550001 RAL-727 1778 chr3R 8570477 8570508 chr3R 8575113 8575129 HMS-Beagle 17 4634 6.0 5.5 5.8 2.5 4652 chr3R 8570477 intergenic not near genes chr3R 8572803 intergenic not near genes chr3R 8575129 intergenic not near genes chr3R_17_8570001 chr3R_8570001 RAL-727 1779 chr3R 8601772 8601797 chr3R 8610918 8610944 roo 8 9149 9.0 1.5 5.2 1.3 9172 chr3R 8601772 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610944 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-727 1780 chr3R 8614793 8614820 chr3R 8614996 8615022 12 199 1.0 6.0 3.5 2.7 229 chr3R 8614793 intron 5-HT2B + chr3R 8614908 intron 5-HT2B + chr3R 8615022 intron 5-HT2B + chr3R_12_8610001 chr3R_8610001 RAL-727 1781 chr3R 8621541 8621561 chr3R 8621618 8621623 4 72 7.0 7.5 7.2 0.5 82 chr3R 8621541 intron 5-HT2B + chr3R 8621582 intron 5-HT2B + chr3R 8621623 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-727 1782 chr3R 8636934 8636955 chr3R 8637237 8637258 10 303 8.5 8.5 8.5 1.1 324 chr3R 8636934 intergenic not near genes chr3R 8637096 intergenic not near genes chr3R 8637258 intergenic not near genes chr3R_10_8635001 chr3R_8635001 RAL-727 1783 chr3R 8636956 8636962 chr3R 8637236 8637263 5 298 5.5 7.5 6.5 0.7 307 chr3R 8636956 intergenic not near genes chr3R 8637110 intergenic not near genes chr3R 8637263 intergenic not near genes chr3R_5_8635001 chr3R_8635001 RAL-727 1784 chr3R 8707363 8707383 chr3R 8709804 8709821 jockey 14 2440 5.5 3.5 4.5 2.5 2458 chr3R 8707363 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709821 intergenic not near genes chr3R_14_8705001 chr3R_8705001 RAL-727 1785 chr3R 8740113 8740137 chr3R 8740451 8740482 19 340 8.0 4.0 6.0 2.7 369 chr3R 8740113 intron CG9801 - chr3R 8740298 intron CG9801 - chr3R 8740482 intron CG9801 - chr3R_19_8740001 chr3R_8740001 RAL-727 1786 chr3R 8882066 8882084 chr3R 8882157 8882175 9 91 4.0 7.5 5.8 1.3 109 chr3R 8882066 intron pyd - chr3R 8882120 intron pyd - chr3R 8882175 intron pyd - chr3R_9_8880001 chr3R_8880001 RAL-727 1787 chr3R 8894870 8894905 chr3R 8896026 8896060 1360 15 1154 1.5 5.0 3.2 3.6 1190 chr3R 8894870 intron pyd - chr3R 8895465 intron pyd - chr3R 8896060 intron pyd - chr3R_15_8895001 chr3R_8895001 RAL-727 1788 chr3R 9044025 9044046 chr3R 9044102 9044123 10 77 4.5 3.5 4.0 2.0 98 chr3R 9044025 intron Nmdmc - chr3R 9044074 intron Nmdmc - chr3R 9044123 intron Nmdmc - chr3R_10_9040001 chr3R_9040001 RAL-727 1789 chr3R 9056882 9056902 chr3R 9056994 9057013 11 110 4.5 13.0 8.8 1.1 131 chr3R 9056882 intron Kdm2 + chr3R 9056948 intron Kdm2 + chr3R 9057013 intron Kdm2 + chr3R_11_9055001 chr3R_9055001 RAL-727 1790 chr3R 9083147 9083175 chr3R 9083232 9083260 12 79 2.0 7.5 4.8 2.1 113 chr3R 9083147 intron pum - chr3R 9083204 intron pum - chr3R 9083260 intron pum - chr3R_12_9080001 chr3R_9080001 RAL-727 1791 chr3R 9141140 9141173 chr3R 9141224 9141257 21 82 2.5 8.5 5.5 3.2 117 chr3R 9141140 intron pum - chr3R 9141198 intron pum - chr3R 9141257 intron pum - chr3R_21_9140001 chr3R_9140001 RAL-727 1792 chr3R 9204257 9204272 chr3R 9204344 9204359 5 86 8.0 8.0 8.0 0.6 102 chr3R 9204257 intron pum - chr3R 9204308 intron pum - chr3R 9204359 intron pum - chr3R_5_9200001 chr3R_9200001 RAL-727 1793 chr3R 9278783 9278808 chr3R 9284043 9284067 Rt1a 12 5259 5.0 9.5 7.2 1.5 5284 chr3R 9278783 intergenic not near genes chr3R 9281425 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_12_9280001 chr3R_9280001 RAL-727 1794 chr3R 9304538 9304550 chr3R 9311815 9311826 Stalker4 5 7278 14.0 4.5 9.2 0.5 7288 chr3R 9304538 intron CG8861 - chr3R 9308182 intron CG8861 - chr3R 9311826 intron CG8861 - chr3R_5_9305001 chr3R_9305001 RAL-727 1795 chr3R 9319582 9319609 chr3R 9320017 9320044 jockey 20 434 4.5 10.0 7.2 2.4 462 chr3R 9319582 intron CG8861 - chr3R 9319813 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_20_9315001 chr3R_9315001 RAL-727 1796 chr3R 9350509 9350513 chr3R 9350590 9350594 4 81 10.5 7.5 9.0 0.4 85 chr3R 9350509 intron CG45050 + chr3R 9350552 intron CG45050 + chr3R 9350594 intron CG45050 + chr3R_4_9350001 chr3R_9350001 RAL-727 1797 chr3R 9350514 9350538 chr3R 9350580 9350619 18 76 3.5 6.0 4.8 3.1 105 chr3R 9350514 intron CG45050 + chr3R 9350566 intron CG45050 + chr3R 9350619 intron CG45050 + chr3R_18_9350001 chr3R_9350001 RAL-727 1798 chr3R 9361821 9361843 chr3R 9362062 9362084 pogo 11 241 3.0 7.0 5.0 1.8 263 chr3R 9361821 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362084 3` UTR CG45050 + chr3R_11_9360001 chr3R_9360001 RAL-727 1799 chr3R 9362976 9363008 chr3R 9363065 9363097 12 89 6.5 4.5 5.5 1.8 121 chr3R 9362976 3` UTR CG45050 + chr3R 9363036 intergenic CG45050 +,CG18473 + chr3R 9363097 intergenic CG45050 +,CG18473 + chr3R_12_9360001 chr3R_9360001 RAL-727 1800 chr3R 9434690 9434725 chr3R 9434777 9434812 21 86 6.0 6.5 6.2 2.9 122 chr3R 9434690 intron ps + chr3R 9434751 intron ps + chr3R 9434812 intron ps + chr3R_21_9430001 chr3R_9430001 RAL-727 1801 chr3R 9447446 9447460 chr3R 9447547 9447564 8 103 10.0 9.5 9.8 0.7 118 chr3R 9447446 intron ps + chr3R 9447505 intron ps + chr3R 9447564 intron ps + chr3R_8_9445001 chr3R_9445001 RAL-727 1802 chr3R 9684115 9684121 chr3R 9684203 9684210 5 88 8.5 6.5 7.5 0.6 95 chr3R 9684115 5` UTR CG9444 - chr3R 9684162 5` UTR CG9444 - chr3R 9684210 5` UTR CG9444 - chr3R_5_9680001 chr3R_9680001 RAL-727 1803 chr3R 9684122 9684146 chr3R 9684198 9684233 8 84 2.5 5.5 4.0 1.6 111 chr3R 9684122 5` UTR CG9444 - chr3R 9684178 5` UTR CG9444 - chr3R 9684233 5` UTR CG9444 - chr3R_8_9680001 chr3R_9680001 RAL-727 1804 chr3R 9880174 9880179 chr3R 9883265 9883289 13 3093 44.0 41.5 42.8 0.3 3115 chr3R 9880174 intron Glut4EF + chr3R 9881732 intron Glut4EF + chr3R 9883289 intron Glut4EF + chr3R_13_9880001 chr3R_9880001 RAL-727 1805 chr3R 9891464 9891484 chr3R 9891604 9891624 7 138 1.5 0.5 1.0 3.5 160 chr3R 9891464 intron Glut4EF + chr3R 9891544 intron Glut4EF + chr3R 9891624 intron Glut4EF + chr3R_7_9890001 chr3R_9890001 RAL-727 1806 chr3R 9898790 9898818 chr3R 9898882 9898897 16 88 3.0 6.0 4.5 2.9 107 chr3R 9898790 intron Glut4EF + chr3R 9898844 intron Glut4EF + chr3R 9898897 intron Glut4EF + chr3R_16_9895001 chr3R_9895001 RAL-727 1807 chr3R 10073776 10073804 chr3R 10073884 10073913 11 109 2.5 7.0 4.8 1.9 137 chr3R 10073776 intergenic nerfin-2 +,CG5361 - chr3R 10073844 3` UTR CG5361 - chr3R 10073913 exon CG5361 - chr3R_11_10070001 chr3R_10070001 RAL-727 1808 chr3R 10192284 10192303 chr3R 10192470 10192481 12 184 5.5 6.5 6.0 1.7 197 chr3R 10192284 intron Syn + chr3R 10192382 intron Syn + chr3R 10192481 intron Syn + chr3R_12_10190001 chr3R_10190001 RAL-727 1809 chr3R 10231782 10231815 chr3R 10237359 10237392 mdg3 11 5574 3.0 5.5 4.2 2.1 5610 chr3R 10231782 intron CG42795 + chr3R 10234587 intron CG42795 + chr3R 10237392 intron CG42795 + chr3R_11_10230001 chr3R_10230001 RAL-727 1810 chr3R 10255374 10255386 chr3R 10260813 10260826 I-element 10 5438 7.5 4.0 5.8 1.5 5452 chr3R 10255374 3` UTR Sirt6 - chr3R 10258100 intron Sirt6 - chr3R 10260826 exon Sirt6 - chr3R_10_10255001 chr3R_10255001 RAL-727 1811 chr3R 10275557 10275586 chr3R 10275634 10275663 11 77 3.5 5.5 4.5 2.0 106 chr3R 10275557 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_11_10275001 chr3R_10275001 RAL-727 1812 chr3R 10306950 10306970 chr3R 10312214 10312246 13 5263 32.5 37.0 34.8 0.4 5296 chr3R 10306950 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312246 3` UTR Bruce - chr3R_13_10305001 chr3R_10305001 RAL-727 1813 chr3R 10401901 10401917 chr3R 10402091 10402102 6 188 8.5 17.0 12.8 0.4 201 chr3R 10401901 exon mthl11 + chr3R 10402002 intron mthl11 + chr3R 10402102 exon mthl11 + chr3R_6_10400001 chr3R_10400001 RAL-727 1814 chr3R 10434467 10434480 chr3R 10434623 10434636 10 156 4.5 1.5 3.0 2.5 169 chr3R 10434467 intergenic Cyp12e1 + chr3R 10434552 intergenic Cyp12e1 + chr3R 10434636 intergenic Cyp12e1 + chr3R_10_10430001 chr3R_10430001 RAL-727 1815 chr3R 10531871 10531900 chr3R 10531952 10531981 9 80 7.5 3.5 5.5 1.4 110 chr3R 10531871 intron hth - chr3R 10531926 intron hth - chr3R 10531981 intron hth - chr3R_9_10530001 chr3R_10530001 RAL-727 1816 chr3R 10596627 10596643 chr3R 10596703 10596719 6 72 6.5 2.0 4.2 1.2 92 chr3R 10596627 intron hth - chr3R 10596673 intron hth - chr3R 10596719 intron hth - chr3R_6_10595001 chr3R_10595001 RAL-727 1817 chr3R 10651817 10651843 chr3R 10651916 10651942 9 98 2.5 9.0 5.8 1.3 125 chr3R 10651817 intergenic not near genes chr3R 10651880 intergenic not near genes chr3R 10651942 intergenic not near genes chr3R_9_10650001 chr3R_10650001 RAL-727 1818 chr3R 10724961 10724975 chr3R 10725030 10725053 11 77 6.0 6.0 6.0 1.6 92 chr3R 10724961 intergenic not near genes chr3R 10725007 intergenic not near genes chr3R 10725053 intergenic not near genes chr3R_11_10725001 chr3R_10725001 RAL-727 1819 chr3R 10727642 10727679 chr3R 10727722 10727759 21 75 3.0 5.0 4.0 4.2 117 chr3R 10727642 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_21_10725001 chr3R_10725001 RAL-727 1820 chr3R 10730950 10730978 chr3R 10731244 10731272 11 292 3.5 3.5 3.5 2.4 322 chr3R 10730950 intergenic not near genes chr3R 10731111 intergenic not near genes chr3R 10731272 intergenic not near genes chr3R_11_10730001 chr3R_10730001 RAL-727 1821 chr3R 10737567 10737600 chr3R 10737933 10737966 17 365 5.5 5.5 5.5 2.6 399 chr3R 10737567 intergenic TkR86C - chr3R 10737766 3` UTR TkR86C - chr3R 10737966 3` UTR TkR86C - chr3R_17_10735001 chr3R_10735001 RAL-727 1822 chr3R 10752719 10752751 chr3R 10752804 10752835 13 84 2.5 2.5 2.5 3.7 116 chr3R 10752719 intergenic not near genes chr3R 10752777 intergenic not near genes chr3R 10752835 intergenic CG14691 - chr3R_13_10750001 chr3R_10750001 RAL-727 1823 chr3R 10904918 10904933 chr3R 10905122 10905125 5 202 4.5 10.0 7.2 0.6 207 chr3R 10904918 intergenic not near genes chr3R 10905022 intergenic not near genes chr3R 10905125 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-727 1824 chr3R 10906837 10906851 chr3R 10906909 10906927 6 74 3.5 6.0 4.8 1.0 90 chr3R 10906837 intergenic not near genes chr3R 10906882 intergenic not near genes chr3R 10906927 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-727 1825 chr3R 10919707 10919717 chr3R 10919764 10919795 5 69 4.5 5.5 5.0 0.8 88 chr3R 10919707 intergenic not near genes chr3R 10919751 intergenic not near genes chr3R 10919795 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-727 1826 chr3R 10920048 10920078 chr3R 10920124 10920156 15 75 1.5 2.5 2.0 5.0 108 chr3R 10920048 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_15_10920001 chr3R_10920001 RAL-727 1827 chr3R 10971478 10971512 chr3R 10971569 10971603 12 88 5.0 4.0 4.5 2.2 125 chr3R 10971478 intergenic not near genes chr3R 10971540 intergenic not near genes chr3R 10971603 intergenic not near genes chr3R_12_10970001 chr3R_10970001 RAL-727 1828 chr3R 10987279 10987307 chr3R 10988146 10988174 6 865 3.5 4.0 3.8 1.2 895 chr3R 10987279 intron CG34114 + chr3R 10987726 intron CG34114 + chr3R 10988174 intron CG34114 + chr3R_6_10985001 chr3R_10985001 RAL-727 1829 chr3R 11043095 11043123 chr3R 11043201 11043228 6 106 1.0 5.5 3.2 1.4 133 chr3R 11043095 intron CG34114 + chr3R 11043162 intron CG34114 + chr3R 11043228 intron CG34114 + chr3R_6_11040001 chr3R_11040001 RAL-727 1830 chr3R 11065587 11065611 chr3R 11071241 11071265 297 5 5653 2.5 2.5 2.5 1.4 5678 chr3R 11065587 intergenic not near genes chr3R 11068426 intergenic not near genes chr3R 11071265 intergenic not near genes chr3R_5_11065001 chr3R_11065001 RAL-727 1831 chr3R 11085461 11085489 chr3R 11085538 11085566 11 76 0.0 1.5 0.8 6.1 105 chr3R 11085461 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_11_11085001 chr3R_11085001 RAL-727 1832 chr3R 11151141 11151152 chr3R 11151321 11151321 6 186 4.0 6.5 5.2 1.0 180 chr3R 11151141 3` UTR Ugt86Di - chr3R 11151231 3` UTR Ugt86Di - chr3R 11151321 3` UTR Ugt86Di - chr3R_6_11150001 chr3R_11150001 RAL-727 1833 chr3R 11174604 11174613 chr3R 11175318 11175327 7 714 39.0 34.5 36.8 0.2 723 chr3R 11174604 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_7_11170001 chr3R_11170001 RAL-727 1834 chr3R 11220276 11220313 chr3R 11220395 11220432 16 117 4.0 3.0 3.5 3.6 156 chr3R 11220276 3` UTR CG6693 - chr3R 11220354 3` UTR CG6693 - chr3R 11220432 3` UTR CG6693 - chr3R_16_11220001 chr3R_11220001 RAL-727 1835 chr3R 11263500 11263526 chr3R 11263583 11263609 9 82 5.0 2.0 3.5 2.0 109 chr3R 11263500 intergenic not near genes chr3R 11263554 intergenic not near genes chr3R 11263609 intergenic not near genes chr3R_9_11260001 chr3R_11260001 RAL-727 1836 chr3R 11287967 11287995 chr3R 11288125 11288154 11 155 2.5 4.5 3.5 2.4 187 chr3R 11287967 intron CR31386 - chr3R 11288060 intron CR31386 - chr3R 11288154 intron CR31386 - chr3R_11_11285001 chr3R_11285001 RAL-727 1837 chr3R 11379243 11379269 chr3R 11388398 11388418 roo 14 9154 5.0 1.5 3.2 3.3 9175 chr3R 11379243 intron pros + chr3R 11383830 intron pros + chr3R 11388418 intron pros + chr3R_14_11380001 chr3R_11380001 RAL-727 1838 chr3R 11406287 11406320 chr3R 11406364 11406397 14 77 2.5 3.0 2.8 3.7 110 chr3R 11406287 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406397 3` UTR pros + chr3R_14_11405001 chr3R_11405001 RAL-727 1839 chr3R 11417642 11417674 chr3R 11422208 11422238 11 4564 32.5 28.0 30.2 0.4 4596 chr3R 11417642 exon CG6723 - chr3R 11419940 exon ninaG - chr3R 11422238 5` UTR CG5270 + chr3R_11_11415001 chr3R_11415001 RAL-727 1840 chr3R 11443679 11443709 chr3R 11443771 11443788 10 88 7.5 2.5 5.0 1.7 109 chr3R 11443679 intron,intron sals -,CG17230 + chr3R 11443734 intron,intron sals -,CG17230 + chr3R 11443788 intron,intron sals -,CG17230 + chr3R_10_11440001 chr3R_11440001 RAL-727 1841 chr3R 11461269 11461299 chr3R 11461349 11461379 13 77 5.0 4.5 4.8 2.2 110 chr3R 11461269 intron CG17230 + chr3R 11461324 intron CG17230 + chr3R 11461379 intron CG17230 + chr3R_13_11460001 chr3R_11460001 RAL-727 1842 chr3R 11664791 11664815 chr3R 11664883 11664902 16 91 4.0 6.0 5.0 2.7 111 chr3R 11664791 intron CG42327 + chr3R 11664846 intron CG42327 + chr3R 11664902 intron CG42327 + chr3R_16_11660001 chr3R_11660001 RAL-727 1843 chr3R 11694730 11694748 chr3R 11694823 11694841 9 93 6.0 11.5 8.8 0.9 111 chr3R 11694730 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694841 intergenic not near genes chr3R_9_11690001 chr3R_11690001 RAL-727 1844 chr3R 11734163 11734180 chr3R 11734282 11734299 6 118 6.5 3.5 5.0 1.0 136 chr3R 11734163 intergenic not near genes chr3R 11734231 intergenic not near genes chr3R 11734299 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-727 1845 chr3R 11740434 11740468 chr3R 11743541 11743575 43 3108 89.5 60.5 75.0 0.6 3141 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_43_11740001 chr3R_11740001 RAL-727 1846 chr3R 11830352 11830354 chr3R 11830434 11830438 4 84 5.5 6.5 6.0 0.6 86 chr3R 11830352 intron CG6959 - chr3R 11830395 intron CG6959 - chr3R 11830438 intron CG6959 - chr3R_4_11830001 chr3R_11830001 RAL-727 1847 chr3R 11841061 11841092 chr3R 11846252 11846273 BS 8 5186 3.5 4.5 4.0 1.6 5212 chr3R 11841061 intron CG6959 - chr3R 11843667 intron CG6959 - chr3R 11846273 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-727 1848 chr3R 11853435 11853473 chr3R 11853584 11853614 15 145 2.0 6.5 4.2 2.9 179 chr3R 11853435 intron CG6959 - chr3R 11853524 intron CG6959 - chr3R 11853614 intron CG6959 - chr3R_15_11850001 chr3R_11850001 RAL-727 1849 chr3R 11853768 11853803 chr3R 11853873 11853908 19 105 11.5 5.5 8.5 2.0 140 chr3R 11853768 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853908 intron CG6959 - chr3R_19_11850001 chr3R_11850001 RAL-727 1850 chr3R 11909361 11909390 chr3R 11909441 11909469 7 77 10.0 5.0 7.5 0.8 108 chr3R 11909361 intron Cad87A - chr3R 11909415 intron Cad87A - chr3R 11909469 intron Cad87A - chr3R_7_11905001 chr3R_11905001 RAL-727 1851 chr3R 12022885 12022910 chr3R 12025062 12025087 pogo 19 2176 5.0 9.5 7.2 2.3 2202 chr3R 12022885 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025087 intergenic not near genes chr3R_19_12020001 chr3R_12020001 RAL-727 1852 chr3R 12045176 12045184 chr3R 12045252 12045260 6 76 11.5 4.0 7.8 0.7 84 chr3R 12045176 intergenic not near genes chr3R 12045218 intergenic not near genes chr3R 12045260 intergenic not near genes chr3R_6_12045001 chr3R_12045001 RAL-727 1853 chr3R 12045192 12045202 chr3R 12045251 12045278 6 70 6.0 4.0 5.0 1.0 86 chr3R 12045192 intergenic not near genes chr3R 12045235 intergenic not near genes chr3R 12045278 intergenic not near genes chr3R_6_12045001 chr3R_12045001 RAL-727 1854 chr3R 12081996 12082027 chr3R 12082071 12082102 10 72 2.5 5.5 4.0 2.0 106 chr3R 12081996 intron CG14741 - chr3R 12082049 intron CG14741 - chr3R 12082102 intron CG14741 - chr3R_10_12080001 chr3R_12080001 RAL-727 1855 chr3R 12182953 12182989 chr3R 12183037 12183073 8 80 4.0 3.5 3.8 1.7 120 chr3R 12182953 intergenic not near genes chr3R 12183013 intergenic not near genes chr3R 12183073 intergenic not near genes chr3R_8_12180001 chr3R_12180001 RAL-727 1856 chr3R 12246766 12246796 chr3R 12246850 12246872 15 81 4.5 9.5 7.0 1.9 106 chr3R 12246766 intergenic not near genes chr3R 12246819 intergenic not near genes chr3R 12246872 intergenic not near genes chr3R_15_12245001 chr3R_12245001 RAL-727 1857 chr3R 12344132 12344158 chr3R 12344209 12344218 9 74 4.5 5.5 5.0 1.5 86 chr3R 12344132 intergenic not near genes chr3R 12344175 intergenic not near genes chr3R 12344218 intergenic not near genes chr3R_9_12340001 chr3R_12340001 RAL-727 1858 chr3R 12404994 12405017 chr3R 12405216 12405238 8 222 7.0 4.5 5.8 1.2 244 chr3R 12404994 intron Cyp9f2 - chr3R 12405116 intron Cyp9f2 - chr3R 12405238 intron Cyp9f2 - chr3R_8_12405001 chr3R_12405001 RAL-727 1859 chr3R 11912114 11912135 chr3R 12511306 12511327 8 599192 28.5 11.5 20.0 0.4 599213 chr3R 11912114 intron Cad87A - chr3R 12211720 intergenic not near genes chr3R 12511327 3` UTR Hsp70Bc + chr3R_8_12210001 chr3R_12210001 RAL-727 1860 chr3R 12582728 12582755 chr3R 12582811 12582839 8 83 1.0 1.0 1.0 4.0 111 chr3R 12582728 intron Octbeta2R - chr3R 12582784 intron Octbeta2R - chr3R 12582839 intron Octbeta2R - chr3R_8_12580001 chr3R_12580001 RAL-727 1861 chr3R 12666765 12666801 chr3R 12666892 12666928 11 124 8.0 3.0 5.5 1.7 163 chr3R 12666765 intron CG14395 + chr3R 12666846 intron CG14395 + chr3R 12666928 intron CG14395 + chr3R_11_12665001 chr3R_12665001 RAL-727 1862 chr3R 12720701 12720730 chr3R 12720781 12720810 24 79 6.0 9.0 7.5 2.8 109 chr3R 12720701 intron Men - chr3R 12720756 intron Men - chr3R 12720810 intron Men - chr3R_24_12720001 chr3R_12720001 RAL-727 1863 chr3R 12781845 12781881 chr3R 12781948 12781984 17 103 3.5 4.5 4.0 3.4 139 chr3R 12781845 intron beat-Vc - chr3R 12781914 intron beat-Vc - chr3R 12781984 intron beat-Vc - chr3R_17_12780001 chr3R_12780001 RAL-727 1864 chr3R 12787950 12787956 chr3R 12788033 12788039 4 83 5.5 9.0 7.2 0.5 89 chr3R 12787950 intergenic not near genes chr3R 12787994 intergenic not near genes chr3R 12788039 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-727 1865 chr3R 12814242 12814264 chr3R 12814319 12814341 10 77 3.5 6.0 4.8 1.7 99 chr3R 12814242 intron CG31345 - chr3R 12814292 intron CG31345 - chr3R 12814341 intron CG31345 - chr3R_10_12810001 chr3R_12810001 RAL-727 1866 chr3R 12864562 12864578 chr3R 12865047 12865063 roo 4 482 1.5 0.5 1.0 2.0 501 chr3R 12864562 intergenic not near genes chr3R 12864812 intergenic not near genes chr3R 12865063 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-727 1867 chr3R 12866487 12866520 chr3R 12866638 12866671 13 150 4.5 8.5 6.5 1.7 184 chr3R 12866487 intergenic not near genes chr3R 12866579 intergenic not near genes chr3R 12866671 intergenic not near genes chr3R_13_12865001 chr3R_12865001 RAL-727 1868 chr3R 12935356 12935371 chr3R 12935460 12935475 6 104 2.5 0.0 1.2 2.7 119 chr3R 12935356 intergenic not near genes chr3R 12935416 intergenic not near genes chr3R 12935475 intergenic not near genes chr3R_6_12935001 chr3R_12935001 RAL-727 1869 chr3R 12953201 12953231 chr3R 12953565 12953588 14 361 2.5 3.0 2.8 3.7 387 chr3R 12953201 intron grsm - chr3R 12953394 intron grsm - chr3R 12953588 intron grsm - chr3R_14_12950001 chr3R_12950001 RAL-727 1870 chr3R 12985274 12985305 chr3R 12985436 12985467 11 162 2.0 4.5 3.2 2.6 193 chr3R 12985274 3` UTR Paip2 + chr3R 12985370 3` UTR Paip2 + chr3R 12985467 3` UTR Paip2 + chr3R_11_12985001 chr3R_12985001 RAL-727 1871 chr3R 13059962 13059976 chr3R 13060156 13060171 5 195 5.0 2.5 3.8 1.0 209 chr3R 13059962 intron sim + chr3R 13060066 intron sim + chr3R 13060171 intron sim + chr3R_5_13060001 chr3R_13060001 RAL-727 1872 chr3R 13075360 13075369 chr3R 13075441 13075449 5 81 4.0 5.0 4.5 0.9 89 chr3R 13075360 intron sim + chr3R 13075404 intron sim + chr3R 13075449 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-727 1873 chr3R 13104419 13104419 chr3R 21907535 21907536 4 8803117 24.0 25.5 24.8 0.2 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-727 1874 chr3R 13143035 13143066 chr3R 13148610 13148613 mdg3 9 5573 2.5 4.0 3.2 2.1 5578 chr3R 13143035 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145824 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148613 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-727 1875 chr3R 13151364 13151392 chr3R 13151490 13151505 4 118 0.5 3.5 2.0 1.3 141 chr3R 13151364 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151434 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151505 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13150001 chr3R_13150001 RAL-727 1876 chr3R 13210767 13210795 chr3R 13210844 13210872 8 74 4.5 3.5 4.0 1.6 105 chr3R 13210767 intron CG8483 - chr3R 13210820 intron CG8483 - chr3R 13210872 intron CG8483 - chr3R_8_13210001 chr3R_13210001 RAL-727 1877 chr3R 7773344 7773344 chr3R 13217322 13217322 7 5443978 19.5 17.5 18.5 0.4 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_7_10495001 chr3R_10495001 RAL-727 1878 chr3R 13248658 13248680 chr3R 13248757 13248779 8 99 5.0 3.0 4.0 1.6 121 chr3R 13248658 intron Ace - chr3R 13248718 intron Ace - chr3R 13248779 intron Ace - chr3R_8_13245001 chr3R_13245001 RAL-727 1879 chr3R 13303912 13303948 chr3R 13303995 13304024 13 82 4.0 5.5 4.8 2.2 112 chr3R 13303912 intron CG32473 + chr3R 13303968 intron CG32473 + chr3R 13304024 intron CG32473 + chr3R_13_13300001 chr3R_13300001 RAL-727 1880 chr3R 13322366 13322399 chr3R 13322450 13322483 15 84 4.0 2.5 3.2 3.6 117 chr3R 13322366 intergenic not near genes chr3R 13322424 intergenic not near genes chr3R 13322483 intergenic not near genes chr3R_15_13320001 chr3R_13320001 RAL-727 1881 chr3R 13376280 13376283 chr3R 13376369 13376372 4 89 3.5 9.5 6.5 0.5 92 chr3R 13376280 intron CG9813 - chr3R 13376326 intron CG9813 - chr3R 13376372 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-727 1882 chr3R 13376293 13376299 chr3R 13376366 13376388 6 84 2.0 9.5 5.8 0.9 95 chr3R 13376293 intron CG9813 - chr3R 13376340 intron CG9813 - chr3R 13376388 intron CG9813 - chr3R_6_13375001 chr3R_13375001 RAL-727 1883 chr3R 13376300 13376300 chr3R 13376360 13376389 4 71 2.0 8.0 5.0 0.7 89 chr3R 13376300 intron CG9813 - chr3R 13376344 intron CG9813 - chr3R 13376389 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-727 1884 chr3R 13436180 13436201 chr3R 13436273 13436273 8 89 5.5 2.5 4.0 1.6 93 chr3R 13436180 intergenic not near genes chr3R 13436226 intergenic not near genes chr3R 13436273 intergenic not near genes chr3R_8_13435001 chr3R_13435001 RAL-727 1885 chr3R 13470846 13470876 chr3R 13471175 13471188 7 326 2.5 2.5 2.5 2.0 342 chr3R 13470846 intergenic not near genes chr3R 13471017 intergenic not near genes chr3R 13471188 intergenic not near genes chr3R_7_13470001 chr3R_13470001 RAL-727 1886 chr3R 13501233 13501264 chr3R 13501326 13501361 5 95 0.0 0.0 0.0 5.0 128 chr3R 13501233 intergenic not near genes chr3R 13501297 intergenic not near genes chr3R 13501361 intergenic not near genes chr3R_5_13500001 chr3R_13500001 RAL-727 1887 chr3R 13554144 13554177 chr3R 13554223 13554240 9 75 5.0 9.0 7.0 1.1 96 chr3R 13554144 intergenic not near genes chr3R 13554192 intergenic not near genes chr3R 13554240 intergenic not near genes chr3R_9_13550001 chr3R_13550001 RAL-727 1888 chr3R 13558034 13558051 chr3R 13558121 13558138 5 87 9.0 6.0 7.5 0.6 104 chr3R 13558034 intergenic not near genes chr3R 13558086 intergenic not near genes chr3R 13558138 intergenic not near genes chr3R_5_13555001 chr3R_13555001 RAL-727 1889 chr3R 13558970 13558981 chr3R 13559180 13559191 6 210 1.5 3.5 2.5 1.7 221 chr3R 13558970 intergenic not near genes chr3R 13559080 intergenic not near genes chr3R 13559191 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-727 1890 chr3R 13603055 13603077 chr3R 13603146 13603168 12 91 3.0 2.5 2.8 3.2 113 chr3R 13603055 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603168 intergenic not near genes chr3R_12_13600001 chr3R_13600001 RAL-727 1891 chr3R 13625697 13625725 chr3R 13625778 13625806 13 81 1.5 3.0 2.2 4.1 109 chr3R 13625697 intergenic not near genes chr3R 13625752 intergenic not near genes chr3R 13625806 intergenic not near genes chr3R_13_13625001 chr3R_13625001 RAL-727 1892 chr3R 13659719 13659837 chr3R 13659825 13659926 6 103 0.0 0.0 0.0 6.0 207 chr3R 13659719 intron Hrb87F - chr3R 13659822 intron Hrb87F - chr3R 13659926 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-727 1893 chr3R 13693027 13693028 chr3R 21907534 21907536 7 8214507 36.0 25.5 30.8 0.2 8214509 chr3R 13693027 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-727 1894 chr3R 13712470 13712484 chr3R 13712737 13712748 7 265 2.0 2.5 2.2 2.2 278 chr3R 13712470 3` UTR CR34044 - chr3R 13712609 3` UTR CR34044 - chr3R 13712748 3` UTR CR34044 - chr3R_7_13710001 chr3R_13710001 RAL-727 1895 chr3R 13714519 13714550 chr3R 13714658 13714689 9 139 2.0 7.0 4.5 1.6 170 chr3R 13714519 intergenic CR34044 - chr3R 13714604 intergenic CR34044 - chr3R 13714689 intergenic CR34044 - chr3R_9_13710001 chr3R_13710001 RAL-727 1896 chr3R 13736606 13736618 chr3R 13736682 13736694 6 76 0.5 15.5 8.0 0.7 88 chr3R 13736606 intron CG34383 + chr3R 13736650 intron CG34383 + chr3R 13736694 intron CG34383 + chr3R_6_13735001 chr3R_13735001 RAL-727 1897 chr3R 13828859 13828871 chr3R 13828935 13828957 6 84 4.0 0.5 2.2 1.9 98 chr3R 13828859 intergenic CR43300 + chr3R 13828908 intergenic CR43300 + chr3R 13828957 intergenic not near genes chr3R_6_13825001 chr3R_13825001 RAL-727 1898 chr3R 13830756 13830766 chr3R 13830920 13830930 6 163 9.0 2.5 5.8 0.9 174 chr3R 13830756 intergenic not near genes chr3R 13830843 intergenic not near genes chr3R 13830930 intergenic not near genes chr3R_6_13830001 chr3R_13830001 RAL-727 1899 chr3R 13850327 13850340 chr3R 13850407 13850427 8 86 0.0 3.5 1.8 2.9 100 chr3R 13850327 intergenic not near genes chr3R 13850377 intergenic not near genes chr3R 13850427 intergenic not near genes chr3R_8_13850001 chr3R_13850001 RAL-727 1900 chr3R 13853955 13853990 chr3R 13854035 13854069 8 79 1.5 1.0 1.2 3.6 114 chr3R 13853955 intergenic not near genes chr3R 13854012 intergenic not near genes chr3R 13854069 intergenic not near genes chr3R_8_13850001 chr3R_13850001 RAL-727 1901 chr3R 13863679 13863716 chr3R 13863767 13863775 18 84 5.5 6.0 5.8 2.6 96 chr3R 13863679 intergenic not near genes chr3R 13863727 intergenic not near genes chr3R 13863775 intergenic not near genes chr3R_18_13860001 chr3R_13860001 RAL-727 1902 chr3R 13880551 13880571 chr3R 13880670 13880671 5 113 4.5 4.5 4.5 0.9 120 chr3R 13880551 intergenic not near genes chr3R 13880611 intergenic not near genes chr3R 13880671 intergenic not near genes chr3R_5_13880001 chr3R_13880001 RAL-727 1903 chr3R 13926003 13926020 chr3R 13926067 13926097 5 68 4.0 5.0 4.5 0.9 94 chr3R 13926003 intergenic not near genes chr3R 13926050 intergenic not near genes chr3R 13926097 intergenic not near genes chr3R_5_13925001 chr3R_13925001 RAL-727 1904 chr3R 13941423 13941457 chr3R 13941503 13941537 15 80 2.0 3.5 2.8 3.9 114 chr3R 13941423 intergenic not near genes chr3R 13941480 intergenic not near genes chr3R 13941537 intergenic not near genes chr3R_15_13940001 chr3R_13940001 RAL-727 1905 chr3R 13948229 13948257 chr3R 13948307 13948333 4 78 2.0 2.0 2.0 1.3 104 chr3R 13948229 intergenic CG31517 + chr3R 13948281 intergenic CG31517 + chr3R 13948333 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-727 1906 chr3R 14021648 14021680 chr3R 14023464 14023497 S-element 21 1815 5.5 5.0 5.2 3.4 1849 chr3R 14021648 intron rdx - chr3R 14022572 intron rdx - chr3R 14023497 intron rdx - chr3R_21_14020001 chr3R_14020001 RAL-727 1907 chr3R 14052040 14052069 chr3R 14052240 14052269 16 199 5.5 5.5 5.5 2.5 229 chr3R 14052040 intergenic not near genes chr3R 14052154 intergenic not near genes chr3R 14052269 intergenic not near genes chr3R_16_14050001 chr3R_14050001 RAL-727 1908 chr3R 14070131 14070137 chr3R 14070212 14070218 6 81 9.0 11.0 10.0 0.5 87 chr3R 14070131 intron foxo + chr3R 14070174 intron foxo + chr3R 14070218 intron foxo + chr3R_6_14070001 chr3R_14070001 RAL-727 1909 chr3R 14070139 14070145 chr3R 14070211 14070223 8 79 7.0 10.5 8.8 0.8 84 chr3R 14070139 intron foxo + chr3R 14070181 intron foxo + chr3R 14070223 intron foxo + chr3R_8_14070001 chr3R_14070001 RAL-727 1910 chr3R 14109087 14109114 chr3R 14109168 14109195 7 81 1.5 6.0 3.8 1.5 108 chr3R 14109087 intergenic CR44237 -,Or88a + chr3R 14109141 intergenic CR44237 -,Or88a + chr3R 14109195 intergenic CR44237 -,Or88a + chr3R_7_14105001 chr3R_14105001 RAL-727 1911 chr3R 14117436 14117473 chr3R 14117512 14117549 12 76 4.5 4.5 4.5 2.2 113 chr3R 14117436 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117549 intron Kif19A - chr3R_12_14115001 chr3R_14115001 RAL-727 1912 chr3R 14166694 14166698 chr3R 14167322 14167339 4 639 2.5 5.0 3.8 0.8 645 chr3R 14166694 3` UTR Dop1R1 - chr3R 14167016 3` UTR Dop1R1 - chr3R 14167339 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-727 1913 chr3R 14180831 14180836 chr3R 14185575 14185601 F-element 4 4760 2.5 5.0 3.8 0.8 4770 chr3R 14180831 intron Dop1R1 - chr3R 14183216 intron Dop1R1 - chr3R 14185601 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-727 1914 chr3R 14208705 14208729 chr3R 14208857 14208872 10 156 3.0 10.0 6.5 1.3 167 chr3R 14208705 intron Dop1R1 - chr3R 14208788 intron Dop1R1 - chr3R 14208872 intron Dop1R1 - chr3R_10_14205001 chr3R_14205001 RAL-727 1915 chr3R 14245610 14245644 chr3R 14245741 14245775 23 128 7.0 8.5 7.8 2.6 165 chr3R 14245610 intergenic CG9616 - chr3R 14245692 intergenic CG9616 - chr3R 14245775 intergenic CG9616 - chr3R_23_14245001 chr3R_14245001 RAL-727 1916 chr3R 14327690 14327725 chr3R 14327772 14327807 23 82 1.5 3.5 2.5 6.6 117 chr3R 14327690 3` UTR CG3321 + chr3R 14327748 intergenic CG3321 +,spn-B + chr3R 14327807 intergenic CG3321 +,spn-B + chr3R_23_14325001 chr3R_14325001 RAL-727 1917 chr3R 14361158 14361172 chr3R 14361285 14361299 11 127 8.0 0.0 4.0 2.2 141 chr3R 14361158 intron,5` UTR NK7.1 -,CG31320 - chr3R 14361228 intron,5` UTR NK7.1 -,CG31320 - chr3R 14361299 intron,5` UTR NK7.1 -,CG31320 - chr3R_11_14360001 chr3R_14360001 RAL-727 1918 chr3R 14489271 14489293 chr3R 14489626 14489648 8 355 4.5 5.0 4.8 1.4 377 chr3R 14489271 intergenic not near genes chr3R 14489460 intergenic not near genes chr3R 14489648 intergenic not near genes chr3R_8_14485001 chr3R_14485001 RAL-727 1919 chr3R 14704384 14704418 chr3R 14704461 14704495 20 76 7.0 6.5 6.8 2.6 111 chr3R 14704384 intron kibra - chr3R 14704440 intron kibra - chr3R 14704495 intron kibra - chr3R_20_14700001 chr3R_14700001 RAL-727 1920 chr3R 14804779 14804792 chr3R 14804872 14804885 6 93 8.0 3.5 5.8 0.9 106 chr3R 14804779 3` UTR btsz - chr3R 14804832 3` UTR btsz - chr3R 14804885 3` UTR btsz - chr3R_6_14800001 chr3R_14800001 RAL-727 1921 chr3R 14821613 14821646 chr3R 14821762 14821795 18 148 4.0 4.5 4.2 3.5 182 chr3R 14821613 intron btsz - chr3R 14821704 intron btsz - chr3R 14821795 intron btsz - chr3R_18_14820001 chr3R_14820001 RAL-727 1922 chr3R 14878437 14878471 chr3R 14879274 14879308 16 836 4.0 7.5 5.8 2.4 871 chr3R 14878437 intergenic not near genes chr3R 14878872 intergenic not near genes chr3R 14879308 intergenic CG3631 + chr3R_16_14875001 chr3R_14875001 RAL-727 1923 chr3R 14926946 14926956 chr3R 14927026 14927037 8 81 5.5 0.0 2.8 2.1 91 chr3R 14926946 intergenic not near genes chr3R 14926992 intergenic not near genes chr3R 14927037 intergenic not near genes chr3R_8_14925001 chr3R_14925001 RAL-727 1924 chr3R 15041424 15041460 chr3R 15045192 15045228 Doc 15 3768 4.0 2.5 3.2 3.6 3804 chr3R 15041424 intergenic not near genes chr3R 15043326 intergenic not near genes chr3R 15045228 intergenic not near genes chr3R_15_15040001 chr3R_15040001 RAL-727 1925 chr3R 15078340 15078375 chr3R 15078420 15078455 21 79 1.0 5.0 3.0 5.2 115 chr3R 15078340 intergenic CG6974 - chr3R 15078398 intergenic CG6974 - chr3R 15078455 intergenic CG6974 - chr3R_21_15075001 chr3R_15075001 RAL-727 1926 chr3R 15079806 15079837 chr3R 15080047 15080078 pogo 18 241 3.5 1.0 2.2 5.6 272 chr3R 15079806 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080078 3` UTR CG6966 - chr3R_18_15075001 chr3R_15075001 RAL-727 1927 chr3R 15132062 15132081 chr3R 15135116 15135141 Juan 12 3059 6.0 8.5 7.2 1.5 3079 chr3R 15132062 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 RAL-727 1928 chr3R 15143921 15143951 chr3R 15144104 15144134 17 182 3.5 2.5 3.0 4.2 213 chr3R 15143921 intron GlyS - chr3R 15144028 intron GlyS - chr3R 15144134 intron GlyS - chr3R_17_15140001 chr3R_15140001 RAL-727 1929 chr3R 15162548 15162553 chr3R 15167316 15167320 F-element 4 4768 11.0 1.0 6.0 0.6 4772 chr3R 15162548 intron Gyc88E + chr3R 15164934 intron Gyc88E + chr3R 15167320 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-727 1930 chr3R 15162554 15162563 chr3R 15167308 15167329 F-element 8 4764 7.0 0.0 3.5 1.8 4775 chr3R 15162554 intron Gyc88E + chr3R 15164942 intron Gyc88E + chr3R 15167329 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-727 1931 chr3R 15190649 15190683 chr3R 15190774 15190808 18 124 1.0 4.5 2.8 4.7 159 chr3R 15190649 3` UTR Gyc88E + chr3R 15190728 3` UTR Gyc88E + chr3R 15190808 3` UTR Gyc88E + chr3R_18_15190001 chr3R_15190001 RAL-727 1932 chr3R 15416217 15416248 chr3R 15416329 15416361 20 110 6.0 6.0 6.0 2.9 144 chr3R 15416217 3` UTR Atx2 + chr3R 15416289 3` UTR Atx2 + chr3R 15416361 3` UTR Atx2 + chr3R_20_15415001 chr3R_15415001 RAL-727 1933 chr3R 15517600 15517632 chr3R 15517683 15517715 5 83 3.5 2.5 3.0 1.2 115 chr3R 15517600 intergenic not near genes chr3R 15517658 intergenic not near genes chr3R 15517715 intergenic not near genes chr3R_5_15515001 chr3R_15515001 RAL-727 1934 chr3R 15586998 15587029 chr3R 15587080 15587111 11 81 2.5 5.0 3.8 2.3 113 chr3R 15586998 intergenic not near genes chr3R 15587054 intergenic not near genes chr3R 15587111 intergenic not near genes chr3R_11_15585001 chr3R_15585001 RAL-727 1935 chr3R 15594657 15594673 chr3R 15594740 15594756 8 83 0.0 4.5 2.2 2.5 99 chr3R 15594657 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594756 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-727 1936 chr3R 15601163 15601196 chr3R 15608685 15608718 412 29 7518 6.0 6.5 6.2 4.0 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_29_15600001 chr3R_15600001 RAL-727 1937 chr3R 15618729 15618756 chr3R 15626203 15626230 blood 14 7473 6.0 3.0 4.5 2.5 7501 chr3R 15618729 intergenic not near genes chr3R 15622480 intergenic not near genes chr3R 15626230 intergenic not near genes chr3R_14_15620001 chr3R_15620001 RAL-727 1938 chr3R 15635233 15635240 chr3R 15635345 15635352 4 112 0.0 12.5 6.2 0.6 119 chr3R 15635233 intergenic CG43335 + chr3R 15635292 intergenic CG43335 + chr3R 15635352 intergenic CG43335 + chr3R_4_15635001 chr3R_15635001 RAL-727 1939 chr3R 15734173 15734200 chr3R 15734262 15734287 5 88 5.0 0.5 2.8 1.3 114 chr3R 15734173 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734287 intergenic not near genes chr3R_5_15730001 chr3R_15730001 RAL-727 1940 chr3R 15844108 15844137 chr3R 15844206 15844235 17 97 6.0 2.0 4.0 3.4 127 chr3R 15844108 3` UTR spn-E + chr3R 15844172 3` UTR spn-E + chr3R 15844235 3` UTR spn-E + chr3R_17_15840001 chr3R_15840001 RAL-727 1941 chr3R 15868939 15868952 chr3R 15869019 15869032 5 80 7.0 0.0 3.5 1.1 93 chr3R 15868939 intron CG31183 - chr3R 15868986 intron CG31183 - chr3R 15869032 intron CG31183 - chr3R_5_15865001 chr3R_15865001 RAL-727 1942 chr3R 15891665 15891682 chr3R 15892057 15892074 6 392 4.5 6.5 5.5 0.9 409 chr3R 15891665 intron CG14877 - chr3R 15891870 intron CG14877 - chr3R 15892074 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-727 1943 chr3R 16048851 16048882 chr3R 16048940 16048972 12 82 6.5 3.5 5.0 2.0 121 chr3R 16048851 intron ird5 - chr3R 16048912 intron ird5 - chr3R 16048972 intron ird5 - chr3R_12_16045001 chr3R_16045001 RAL-727 1944 chr3R 16189408 16189442 chr3R 16189811 16189845 invader4 20 403 2.5 0.5 1.5 8.0 437 chr3R 16189408 intron sra + chr3R 16189626 intron sra + chr3R 16189845 intron sra + chr3R_20_16185001 chr3R_16185001 RAL-727 1945 chr3R 16260836 16260843 chr3R 16260916 16260923 4 80 0.0 6.5 3.2 1.0 87 chr3R 16260836 intergenic not near genes chr3R 16260880 intergenic bor - chr3R 16260923 intergenic bor - chr3R_4_16260001 chr3R_16260001 RAL-727 1946 chr3R 16275597 16275612 chr3R 16275901 16275916 6 310 5.0 6.0 5.5 0.9 319 chr3R 16275597 intron gish + chr3R 16275756 intron gish + chr3R 16275916 intron gish + chr3R_6_16275001 chr3R_16275001 RAL-727 1947 chr3R 16374293 16374317 chr3R 16374410 16374434 9 117 6.5 3.5 5.0 1.5 141 chr3R 16374293 intergenic ss - chr3R 16374364 intergenic ss - chr3R 16374434 3` UTR ss - chr3R_9_16370001 chr3R_16370001 RAL-727 1948 chr3R 16430565 16430599 chr3R 16430646 16430680 19 80 3.5 7.5 5.5 2.9 115 chr3R 16430565 intergenic CG31279 + chr3R 16430622 intergenic CG31279 + chr3R 16430680 5` UTR CG31279 + chr3R_19_16430001 chr3R_16430001 RAL-727 1949 chr3R 16471225 16471257 chr3R 16471323 16471354 17 97 2.0 1.0 1.5 6.8 129 chr3R 16471225 exon CSN5 + chr3R 16471290 3` UTR CSN5 + chr3R 16471354 3` UTR CSN5 + chr3R_17_16470001 chr3R_16470001 RAL-727 1950 chr3R 16472584 16472596 chr3R 16472655 16472659 5 71 9.5 6.5 8.0 0.6 75 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472659 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-727 1951 chr3R 16535521 16535532 chr3R 16535597 16535602 5 75 4.5 7.0 5.8 0.7 81 chr3R 16535521 intron CG42342 + chr3R 16535562 intron CG42342 + chr3R 16535602 intron CG42342 + chr3R_5_16535001 chr3R_16535001 RAL-727 1952 chr3R 16610239 16610243 chr3R 16610317 16610320 4 78 13.0 3.0 8.0 0.4 81 chr3R 16610239 intron NPF + chr3R 16610280 intron NPF + chr3R 16610320 intron NPF + chr3R_4_16610001 chr3R_16610001 RAL-727 1953 chr3R 16610244 16610268 chr3R 16610315 16610346 13 77 4.0 3.0 3.5 2.9 102 chr3R 16610244 intron NPF + chr3R 16610295 intron NPF + chr3R 16610346 intron NPF + chr3R_13_16610001 chr3R_16610001 RAL-727 1954 chr3R 16756318 16756344 chr3R 16762508 16762522 diver 9 6189 3.5 1.5 2.5 2.6 6204 chr3R 16756318 intron bxd - chr3R 16759420 intron bxd - chr3R 16762522 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-727 1955 chr3R 16796034 16796049 chr3R 16796570 16796570 4 532 2.5 5.0 3.8 0.8 536 chr3R 16796034 intergenic not near genes chr3R 16796302 intergenic not near genes chr3R 16796570 intergenic not near genes chr3R_4_16795001 chr3R_16795001 RAL-727 1956 chr3R 16799833 16799844 chr3R 16800164 16800175 7 329 0.0 1.0 0.5 4.7 342 chr3R 16799833 intergenic not near genes chr3R 16800004 intergenic not near genes chr3R 16800175 intergenic CR45750 + chr3R_7_16800001 chr3R_16800001 RAL-727 1957 chr3R 16849716 16849745 chr3R 16849818 16849848 6 96 3.5 3.0 3.2 1.4 132 chr3R 16849716 intron iab-8 - chr3R 16849782 intron iab-8 - chr3R 16849848 intron iab-8 - chr3R_6_16845001 chr3R_16845001 RAL-727 1958 chr3R 16935501 16935507 chr3R 16935603 16935626 6 111 7.5 2.5 5.0 1.0 125 chr3R 16935501 intron Abd-B - chr3R 16935564 intron Abd-B - chr3R 16935626 intron Abd-B - chr3R_6_16935001 chr3R_16935001 RAL-727 1959 chr3R 16951902 16951919 chr3R 16951979 16951996 8 76 9.5 13.0 11.2 0.7 94 chr3R 16951902 intron Abd-B - chr3R 16951949 intron Abd-B - chr3R 16951996 intron Abd-B - chr3R_8_16950001 chr3R_16950001 RAL-727 1960 chr3R 17002550 17002555 chr3R 17002639 17002644 5 89 13.0 6.5 9.8 0.5 94 chr3R 17002550 intergenic CG16941 -,Irc + chr3R 17002597 intergenic CG16941 -,Irc + chr3R 17002644 intergenic Irc +,CG16941 - chr3R_5_17000001 chr3R_17000001 RAL-727 1961 chr3R 17002556 17002580 chr3R 17002638 17002669 15 85 4.0 6.5 5.2 2.4 113 chr3R 17002556 intergenic CG16941 -,Irc + chr3R 17002612 intergenic CG16941 -,Irc + chr3R 17002669 intergenic Irc +,CG16941 - chr3R_15_17000001 chr3R_17000001 RAL-727 1962 chr3R 17077778 17077809 chr3R 17077905 17077936 17 124 2.0 6.5 4.2 3.3 158 chr3R 17077778 intron Keap1 - chr3R 17077857 intron Keap1 - chr3R 17077936 intron Keap1 - chr3R_17_17075001 chr3R_17075001 RAL-727 1963 chr3R 17080874 17080883 chr3R 17080967 17080979 6 95 3.0 10.5 6.8 0.8 105 chr3R 17080874 intron kuk + chr3R 17080926 intron kuk + chr3R 17080979 intron kuk + chr3R_6_17080001 chr3R_17080001 RAL-727 1964 chr3R 17120499 17120535 chr3R 17120724 17120760 14 224 6.5 5.5 6.0 2.0 261 chr3R 17120499 intron,exon cher -,CG34278 + chr3R 17120630 intron,exon cher -,CG34278 + chr3R 17120760 intron,3` UTR cher -,CG34278 + chr3R_14_17120001 chr3R_17120001 RAL-727 1965 chr3R 17121531 17121556 chr3R 17121716 17121751 11 192 2.5 3.5 3.0 2.8 220 chr3R 17121531 intron cher - chr3R 17121641 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_11_17120001 chr3R_17120001 RAL-727 1966 chr3R 17389054 17389054 chr3R 21907534 21907536 5 4518481 4.5 25.5 15.0 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-727 1967 chr3R 17407003 17407032 chr3R 17407105 17407134 11 102 4.5 6.5 5.5 1.7 131 chr3R 17407003 intron CG42798 + chr3R 17407068 5` UTR CG42798 + chr3R 17407134 exon CG42798 + chr3R_11_17405001 chr3R_17405001 RAL-727 1968 chr3R 17452664 17452691 chr3R 17452740 17452767 8 76 2.5 0.0 1.2 3.6 103 chr3R 17452664 intergenic not near genes chr3R 17452716 intergenic not near genes chr3R 17452767 intergenic not near genes chr3R_8_17450001 chr3R_17450001 RAL-727 1969 chr3R 17461213 17461229 chr3R 17461279 17461311 9 80 2.0 2.5 2.2 2.8 98 chr3R 17461213 intergenic not near genes chr3R 17461262 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_9_17460001 chr3R_17460001 RAL-727 1970 chr3R 17497963 17497992 chr3R 17498049 17498078 8 86 4.0 5.0 4.5 1.5 115 chr3R 17497963 intron Dscam3 - chr3R 17498020 intron Dscam3 - chr3R 17498078 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-727 1971 chr3R 17521570 17521578 chr3R 17521722 17521733 5 154 3.5 5.5 4.5 0.9 163 chr3R 17521570 intergenic not near genes chr3R 17521652 intergenic not near genes chr3R 17521733 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-727 1972 chr3R 17521579 17521590 chr3R 17521716 17521750 12 154 2.0 4.5 3.2 2.9 171 chr3R 17521579 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521750 intergenic not near genes chr3R_12_17520001 chr3R_17520001 RAL-727 1973 chr3R 17524921 17524931 chr3R 17525001 17525011 4 80 0.0 9.0 4.5 0.7 90 chr3R 17524921 intergenic not near genes chr3R 17524966 intergenic not near genes chr3R 17525011 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-727 1974 chr3R 17591286 17591322 chr3R 17591720 17591735 F-element 7 431 7.0 4.0 5.5 1.1 449 chr3R 17591286 intergenic not near genes chr3R 17591510 intergenic not near genes chr3R 17591735 intergenic not near genes chr3R_7_17590001 chr3R_17590001 RAL-727 1975 chr3R 17637035 17637069 chr3R 17637199 17637200 12 161 2.0 2.0 2.0 4.0 165 chr3R 17637035 intron CG43175 + chr3R 17637118 intron CG43175 + chr3R 17637200 intron CG43175 + chr3R_12_17635001 chr3R_17635001 RAL-727 1976 chr3R 17638316 17638349 chr3R 17638802 17638835 roo 21 485 6.0 6.0 6.0 3.0 519 chr3R 17638316 intron CG43175 + chr3R 17638576 intron CG43175 + chr3R 17638835 intron,intron CG43175 +,CR45222 + chr3R_21_17635001 chr3R_17635001 RAL-727 1977 chr3R 17645714 17645723 chr3R 17645834 17645853 5 128 3.0 5.0 4.0 1.0 139 chr3R 17645714 intergenic CG43175 + chr3R 17645784 intergenic not near genes chr3R 17645853 intergenic not near genes chr3R_5_17645001 chr3R_17645001 RAL-727 1978 chr3R 17657653 17657659 chr3R 17657804 17657810 INE-1 4 151 1.0 6.0 3.5 0.9 157 chr3R 17657653 intron CG14322 + chr3R 17657732 intron CG14322 + chr3R 17657810 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-727 1979 chr3R 17823212 17823232 chr3R 17823297 17823317 8 85 4.0 5.5 4.8 1.4 105 chr3R 17823212 intron tinc + chr3R 17823264 intron tinc + chr3R 17823317 intron tinc + chr3R_8_17820001 chr3R_17820001 RAL-727 1980 chr3R 17825925 17825931 chr3R 17826007 17826010 4 81 0.0 6.5 3.2 1.0 85 chr3R 17825925 intron tinc + chr3R 17825968 intron tinc + chr3R 17826010 intron tinc + chr3R_4_17825001 chr3R_17825001 RAL-727 1981 chr3R 17845204 17845216 chr3R 17845267 17845292 10 69 2.0 3.5 2.8 2.6 88 chr3R 17845204 intron tinc + chr3R 17845248 intron tinc + chr3R 17845292 intron tinc + chr3R_10_17845001 chr3R_17845001 RAL-727 1982 chr3R 17895345 17895376 chr3R 17895434 17895466 6 90 3.0 0.0 1.5 2.4 121 chr3R 17895345 intron Rim - chr3R 17895406 intron Rim - chr3R 17895466 intron Rim - chr3R_6_17895001 chr3R_17895001 RAL-727 1983 chr3R 17899095 17899109 chr3R 17899173 17899187 5 78 5.0 5.0 5.0 0.8 92 chr3R 17899095 intron Rim - chr3R 17899141 intron Rim - chr3R 17899187 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-727 1984 chr3R 17925868 17925877 chr3R 17927325 17927344 hobo 4 1461 7.0 11.5 9.2 0.4 1476 chr3R 17925868 intron cpo + chr3R 17926606 intron cpo + chr3R 17927344 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-727 1985 chr3R 17925880 17925888 chr3R 17927320 17927355 hobo 4 1460 6.0 9.5 7.8 0.5 1475 chr3R 17925880 intron cpo + chr3R 17926618 intron cpo + chr3R 17927355 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-727 1986 chr3R 18032796 18032806 chr3R 18040466 18040476 opus 6 7670 0.0 1.0 0.5 4.0 7680 chr3R 18032796 intergenic not near genes chr3R 18036636 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-727 1987 chr3R 18041756 18041774 chr3R 18041833 18041851 12 76 0.5 1.0 0.8 6.7 95 chr3R 18041756 intergenic not near genes chr3R 18041804 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_12_18040001 chr3R_18040001 RAL-727 1988 chr3R 18061581 18061612 chr3R 18063149 18063180 F-element 14 1568 4.5 3.0 3.8 2.9 1599 chr3R 18061581 intergenic not near genes chr3R 18062380 intergenic not near genes chr3R 18063180 intergenic not near genes chr3R_14_18060001 chr3R_18060001 RAL-727 1989 chr3R 18078154 18078177 chr3R 18078233 18078256 6 79 5.5 0.0 2.8 1.6 102 chr3R 18078154 intergenic not near genes chr3R 18078205 intergenic not near genes chr3R 18078256 intergenic not near genes chr3R_6_18075001 chr3R_18075001 RAL-727 1990 chr3R 18126210 18126222 chr3R 18126288 18126301 6 78 6.5 2.5 4.5 1.1 91 chr3R 18126210 intron sr + chr3R 18126256 intron sr + chr3R 18126301 intron sr + chr3R_6_18125001 chr3R_18125001 RAL-727 1991 chr3R 18143559 18143589 chr3R 18143648 18143678 8 89 4.5 3.0 3.8 1.7 119 chr3R 18143559 intergenic not near genes chr3R 18143618 intergenic not near genes chr3R 18143678 intergenic not near genes chr3R_8_18140001 chr3R_18140001 RAL-727 1992 chr3R 18203714 18203724 chr3R 18203791 18203801 5 76 5.0 6.0 5.5 0.8 87 chr3R 18203714 intron CG7985 + chr3R 18203758 intron CG7985 + chr3R 18203801 intron CG7985 + chr3R_5_18200001 chr3R_18200001 RAL-727 1993 chr3R 18235212 18235243 chr3R 18235388 18235419 17 173 3.5 7.0 5.2 2.7 207 chr3R 18235212 intergenic not near genes chr3R 18235316 intergenic not near genes chr3R 18235419 intergenic not near genes chr3R_17_18235001 chr3R_18235001 RAL-727 1994 chr3R 18291844 18291878 chr3R 18291927 18291961 17 82 1.5 4.5 3.0 4.2 117 chr3R 18291844 intron l(3)05822 - chr3R 18291902 intron l(3)05822 - chr3R 18291961 intron l(3)05822 - chr3R_17_18290001 chr3R_18290001 RAL-727 1995 chr3R 18299264 18299294 chr3R 18302632 18302662 13 3371 29.0 34.5 31.8 0.4 3398 chr3R 18299264 5` UTR Dlc90F + chr3R 18300963 exon CG18600 - chr3R 18302662 exon CG7126 - chr3R_13_18300001 chr3R_18300001 RAL-727 1996 chr3R 18331782 18331792 chr3R 18333275 18333280 hopper2 6 1493 5.5 5.0 5.2 1.0 1498 chr3R 18331782 3` UTR CG15803 - chr3R 18332531 intron CG15803 - chr3R 18333280 3` UTR CG15803 - chr3R_6_18330001 chr3R_18330001 RAL-727 1997 chr3R 18352574 18352606 chr3R 18352667 18352699 12 93 4.0 3.5 3.8 2.5 125 chr3R 18352574 intron CG15803 - chr3R 18352636 intron CG15803 - chr3R 18352699 intron CG15803 - chr3R_12_18350001 chr3R_18350001 RAL-727 1998 chr3R 18481037 18481060 chr3R 18481134 18481157 10 95 4.5 4.5 4.5 1.8 120 chr3R 18481037 intron fru - chr3R 18481097 intron fru - chr3R 18481157 intron fru - chr3R_10_18480001 chr3R_18480001 RAL-727 1999 chr3R 18501592 18501626 chr3R 18501673 18501707 32 80 4.5 7.5 6.0 4.6 115 chr3R 18501592 intron fru - chr3R 18501650 intron fru - chr3R 18501707 intron fru - chr3R_32_18500001 chr3R_18500001 RAL-727 2000 chr3R 18606502 18606520 chr3R 18610734 18610752 F-element 6 4232 7.5 7.5 7.5 0.7 4250 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608627 intron,intron qin +,CG14304 - chr3R 18610752 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-727 2001 chr3R 18617720 18617740 chr3R 18617800 18617820 4 80 2.0 1.5 1.8 1.4 100 chr3R 18617720 intron,intron qin +,CG14304 - chr3R 18617770 intron,intron qin +,CG14304 - chr3R 18617820 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-727 2002 chr3R 18695761 18695792 chr3R 18695845 18695851 8 81 3.5 0.0 1.8 2.9 90 chr3R 18695761 3` UTR CG34282 + chr3R 18695806 intergenic CG34282 + chr3R 18695851 intergenic CG34282 + chr3R_8_18695001 chr3R_18695001 RAL-727 2003 chr3R 18766776 18766809 chr3R 18766854 18766881 10 77 4.5 4.0 4.2 1.9 105 chr3R 18766776 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766881 intron CG7720 - chr3R_10_18765001 chr3R_18765001 RAL-727 2004 chr3R 18781691 18781720 chr3R 18781767 18781796 8 74 5.0 6.0 5.5 1.2 105 chr3R 18781691 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781796 intron CG7720 - chr3R_8_18780001 chr3R_18780001 RAL-727 2005 chr3R 18785864 18785902 chr3R 18785941 18785979 15 76 4.5 3.0 3.8 3.1 115 chr3R 18785864 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785979 intron CG7720 - chr3R_15_18785001 chr3R_18785001 RAL-727 2006 chr3R 18807330 18807334 chr3R 18807407 18807411 4 77 3.0 0.0 1.5 1.6 81 chr3R 18807330 intron CG18208 - chr3R 18807370 intron CG18208 - chr3R 18807411 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-727 2007 chr3R 18808498 18808508 chr3R 18808575 18808580 5 76 0.0 4.5 2.2 1.6 82 chr3R 18808498 intron CG18208 - chr3R 18808539 intron CG18208 - chr3R 18808580 intron CG18208 - chr3R_5_18805001 chr3R_18805001 RAL-727 2008 chr3R 18812074 18812108 chr3R 18812152 18812186 25 77 6.0 6.0 6.0 3.6 112 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_25_18810001 chr3R_18810001 RAL-727 2009 chr3R 18839813 18839825 chr3R 18839897 18839909 5 83 8.5 7.0 7.8 0.6 96 chr3R 18839813 intron CG18208 - chr3R 18839861 intron CG18208 - chr3R 18839909 intron CG18208 - chr3R_5_18835001 chr3R_18835001 RAL-727 2010 chr3R 18839828 18839837 chr3R 18839895 18839911 5 77 5.5 6.0 5.8 0.7 83 chr3R 18839828 intron CG18208 - chr3R 18839870 intron CG18208 - chr3R 18839911 intron CG18208 - chr3R_5_18835001 chr3R_18835001 RAL-727 2011 chr3R 19014090 19014109 chr3R 19014169 19014189 8 77 9.5 5.5 7.5 0.9 99 chr3R 19014090 intron gukh + chr3R 19014140 intron gukh + chr3R 19014189 intron gukh + chr3R_8_19010001 chr3R_19010001 RAL-727 2012 chr3R 19014111 19014123 chr3R 19014166 19014203 12 75 6.5 4.0 5.2 1.9 92 chr3R 19014111 intron gukh + chr3R 19014157 intron gukh + chr3R 19014203 intron gukh + chr3R_12_19010001 chr3R_19010001 RAL-727 2013 chr3R 19117062 19117090 chr3R 19117206 19117215 5 140 7.0 0.0 3.5 1.1 153 chr3R 19117062 intron CG6040 + chr3R 19117138 intron CG6040 + chr3R 19117215 intron CG6040 + chr3R_5_19115001 chr3R_19115001 RAL-727 2014 chr3R 19205613 19205633 chr3R 19205693 19205704 10 76 3.5 4.5 4.0 2.0 91 chr3R 19205613 intergenic not near genes chr3R 19205658 intergenic not near genes chr3R 19205704 intergenic not near genes chr3R_10_19205001 chr3R_19205001 RAL-727 2015 chr3R 19212990 19213015 chr3R 19213069 19213090 6 77 13.0 4.0 8.5 0.6 100 chr3R 19212990 intron cry + chr3R 19213040 intron cry + chr3R 19213090 intron cry + chr3R_6_19210001 chr3R_19210001 RAL-727 2016 chr3R 19248874 19248902 chr3R 19248954 19248979 10 80 1.5 0.0 0.8 5.6 105 chr3R 19248874 intergenic not near genes chr3R 19248926 intergenic not near genes chr3R 19248979 intergenic not near genes chr3R_10_19245001 chr3R_19245001 RAL-727 2017 chr3R 19276933 19276950 chr3R 19277013 19277030 8 80 8.0 8.5 8.2 0.9 97 chr3R 19276933 intergenic not near genes chr3R 19276982 intergenic not near genes chr3R 19277030 intergenic not near genes chr3R_8_19275001 chr3R_19275001 RAL-727 2018 chr3R 19302195 19302222 chr3R 19302296 19302317 6 98 0.0 2.5 1.2 2.7 122 chr3R 19302195 intergenic not near genes chr3R 19302256 intergenic Dl - chr3R 19302317 intergenic Dl - chr3R_6_19300001 chr3R_19300001 RAL-727 2019 chr3R 19344673 19344684 chr3R 19344808 19344816 5 134 8.5 1.0 4.8 0.9 143 chr3R 19344673 intergenic not near genes chr3R 19344744 intergenic not near genes chr3R 19344816 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-727 2020 chr3R 19377428 19377449 chr3R 19377510 19377531 6 80 4.0 7.5 5.8 0.9 103 chr3R 19377428 intron Ino80 - chr3R 19377480 intron Ino80 - chr3R 19377531 intron Ino80 - chr3R_6_19375001 chr3R_19375001 RAL-727 2021 chr3R 19426089 19426108 chr3R 19426253 19426286 11 171 5.0 6.5 5.8 1.6 197 chr3R 19426089 intron CG31221 + chr3R 19426188 intron CG31221 + chr3R 19426286 intron CG31221 + chr3R_11_19425001 chr3R_19425001 RAL-727 2022 chr3R 19551691 19551711 chr3R 19551774 19551799 11 84 6.0 5.0 5.5 1.7 108 chr3R 19551691 intron Dys + chr3R 19551745 intron Dys + chr3R 19551799 intron Dys + chr3R_11_19550001 chr3R_19550001 RAL-727 2023 chr3R 19567544 19567550 chr3R 19567628 19567634 4 84 4.5 1.0 2.8 1.1 90 chr3R 19567544 intron Dys + chr3R 19567589 intron Dys + chr3R 19567634 intron Dys + chr3R_4_19565001 chr3R_19565001 RAL-727 2024 chr3R 19602762 19602789 chr3R 19602840 19602867 12 77 7.0 4.5 5.8 1.8 105 chr3R 19602762 intergenic CG7333 + chr3R 19602814 intergenic CG7333 + chr3R 19602867 intergenic CG7333 + chr3R_12_19600001 chr3R_19600001 RAL-727 2025 chr3R 19655740 19655769 chr3R 19655830 19655859 8 90 2.5 1.5 2.0 2.7 119 chr3R 19655740 intron CG6184 - chr3R 19655800 intron CG6184 - chr3R 19655859 intron CG6184 - chr3R_8_19655001 chr3R_19655001 RAL-727 2026 chr3R 19716219 19716246 chr3R 19716296 19716323 6 77 0.0 0.5 0.2 5.0 104 chr3R 19716219 intergenic CG34286 - chr3R 19716271 intergenic CG34286 - chr3R 19716323 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-727 2027 chr3R 19721674 19721685 chr3R 19721794 19721805 4 120 4.0 8.5 6.2 0.6 131 chr3R 19721674 intergenic not near genes chr3R 19721740 intergenic not near genes chr3R 19721805 intergenic not near genes chr3R_4_19720001 chr3R_19720001 RAL-727 2028 chr3R 19726467 19726475 chr3R 19726527 19726553 4 70 0.5 2.0 1.2 1.8 86 chr3R 19726467 intergenic not near genes chr3R 19726510 intergenic not near genes chr3R 19726553 intergenic not near genes chr3R_4_19725001 chr3R_19725001 RAL-727 2029 chr3R 19763923 19763944 chr3R 19764011 19764032 6 88 0.0 0.0 0.0 6.0 109 chr3R 19763923 intron GluClalpha + chr3R 19763978 intron GluClalpha + chr3R 19764032 intron GluClalpha + chr3R_6_19760001 chr3R_19760001 RAL-727 2030 chr3R 19773972 19774176 chr3R 19777891 19778041 5 3870 9.0 27.5 18.2 0.3 4069 chr3R 19773972 intron GluClalpha + chr3R 19776006 exon CG11659 - chr3R 19778041 intergenic not near genes chr3R_5_19775001 chr3R_19775001 RAL-727 2031 chr3R 19783184 19783212 chr3R 19783272 19783300 12 88 1.5 3.0 2.2 3.8 116 chr3R 19783184 intergenic CG11407 +,CG11453 + chr3R 19783242 intergenic CG11407 +,CG11453 + chr3R 19783300 intergenic CG11407 +,CG11453 + chr3R_12_19780001 chr3R_19780001 RAL-727 2032 chr3R 19953953 19953971 chr3R 19954030 19954047 5 76 4.0 5.0 4.5 0.9 94 chr3R 19953953 intron Hs6st - chr3R 19954000 intron Hs6st - chr3R 19954047 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-727 2033 chr3R 19953975 19953982 chr3R 19954025 19954058 5 67 0.5 4.5 2.5 1.4 83 chr3R 19953975 intron Hs6st - chr3R 19954016 intron Hs6st - chr3R 19954058 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-727 2034 chr3R 19995191 19995220 chr3R 19995342 19995372 14 152 6.0 2.5 4.2 2.7 181 chr3R 19995191 intron Hs6st - chr3R 19995282 intron Hs6st - chr3R 19995372 intron Hs6st - chr3R_14_19995001 chr3R_19995001 RAL-727 2035 chr3R 20059469 20059498 chr3R 20059544 20059578 19 77 6.0 6.5 6.2 2.6 109 chr3R 20059469 intron CG4390 - chr3R 20059524 intron CG4390 - chr3R 20059578 exon CG4390 - chr3R_19_20055001 chr3R_20055001 RAL-727 2036 chr3R 20097712 20097732 chr3R 20097790 20097810 5 78 3.5 5.0 4.2 1.0 98 chr3R 20097712 intergenic not near genes chr3R 20097761 intergenic not near genes chr3R 20097810 intergenic not near genes chr3R_5_20095001 chr3R_20095001 RAL-727 2037 chr3R 20109539 20109571 chr3R 20114745 20114777 copia 16 5206 1.0 4.0 2.5 4.6 5238 chr3R 20109539 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_16_20110001 chr3R_20110001 RAL-727 2038 chr3R 20156704 20156723 chr3R 20165858 20165893 roo 17 9167 6.5 7.0 6.8 2.2 9189 chr3R 20156704 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_17_20160001 chr3R_20160001 RAL-727 2039 chr3R 20177792 20177819 chr3R 20177873 20177900 10 81 2.0 3.5 2.8 2.6 108 chr3R 20177792 intergenic not near genes chr3R 20177846 intergenic not near genes chr3R 20177900 intergenic not near genes chr3R_10_20175001 chr3R_20175001 RAL-727 2040 chr3R 20201356 20201385 chr3R 20201442 20201471 19 85 4.5 6.5 5.5 2.9 115 chr3R 20201356 intergenic not near genes chr3R 20201414 intergenic not near genes chr3R 20201471 intergenic not near genes chr3R_19_20200001 chr3R_20200001 RAL-727 2041 chr3R 20232998 20233003 chr3R 20233091 20233096 4 92 9.5 3.5 6.5 0.5 98 chr3R 20232998 intron Nlg4 + chr3R 20233047 intron Nlg4 + chr3R 20233096 intron Nlg4 + chr3R_4_20230001 chr3R_20230001 RAL-727 2042 chr3R 20233012 20233023 chr3R 20233087 20233116 4 87 5.0 2.0 3.5 0.9 104 chr3R 20233012 intron Nlg4 + chr3R 20233064 intron Nlg4 + chr3R 20233116 intron Nlg4 + chr3R_4_20230001 chr3R_20230001 RAL-727 2043 chr3R 20245275 20245301 chr3R 20248886 20248912 F-element 7 3611 0.5 1.5 1.0 3.5 3637 chr3R 20245275 3` UTR Nlg4 + chr3R 20247094 intergenic not near genes chr3R 20248912 intergenic not near genes chr3R_7_20245001 chr3R_20245001 RAL-727 2044 chr3R 20252225 20252253 chr3R 20252303 20252331 10 78 0.0 0.5 0.2 8.3 106 chr3R 20252225 intergenic not near genes chr3R 20252278 intergenic cic + chr3R 20252331 intergenic cic + chr3R_10_20250001 chr3R_20250001 RAL-727 2045 chr3R 20256844 20256871 chr3R 20256922 20256949 11 78 0.5 6.5 3.5 2.4 105 chr3R 20256844 intron cic + chr3R 20256896 intron cic + chr3R 20256949 intron cic + chr3R_11_20255001 chr3R_20255001 RAL-727 2046 chr3R 20266525 20266549 chr3R 20272986 20273020 Burdock 14 6468 4.5 5.5 5.0 2.3 6495 chr3R 20266525 intron cic + chr3R 20269772 intron cic + chr3R 20273020 intron cic + chr3R_14_20265001 chr3R_20265001 RAL-727 2047 chr3R 20308187 20308206 chr3R 20308275 20308294 6 86 6.5 0.0 3.2 1.4 107 chr3R 20308187 intergenic not near genes chr3R 20308240 intergenic not near genes chr3R 20308294 intergenic not near genes chr3R_6_20305001 chr3R_20305001 RAL-727 2048 chr3R 20330999 20331032 chr3R 20331485 20331518 roo 15 485 4.0 3.5 3.8 3.1 519 chr3R 20330999 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331518 intergenic not near genes chr3R_15_20330001 chr3R_20330001 RAL-727 2049 chr3R 20434850 20434856 chr3R 20435035 20435041 5 185 2.0 2.0 2.0 1.7 191 chr3R 20434850 intron Gfrl - chr3R 20434946 intron Gfrl - chr3R 20435041 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-727 2050 chr3R 20441411 20441437 chr3R 20441495 20441531 9 93 4.5 3.5 4.0 1.8 120 chr3R 20441411 intron Gfrl - chr3R 20441471 intron Gfrl - chr3R 20441531 intron Gfrl - chr3R_9_20440001 chr3R_20440001 RAL-727 2051 chr3R 20450124 20450129 chr3R 20450204 20450209 6 80 0.0 0.0 0.0 6.0 85 chr3R 20450124 intron Gfrl - chr3R 20450166 intron Gfrl - chr3R 20450209 intron Gfrl - chr3R_6_20450001 chr3R_20450001 RAL-727 2052 chr3R 20466355 20466376 chr3R 20466832 20466852 9 476 5.5 0.0 2.8 2.4 497 chr3R 20466355 intron Gfrl - chr3R 20466604 intron Gfrl - chr3R 20466852 intron Gfrl - chr3R_9_20465001 chr3R_20465001 RAL-727 2053 chr3R 20499810 20499840 chr3R 20499889 20499919 12 79 4.5 4.5 4.5 2.2 109 chr3R 20499810 intergenic Dic2 - chr3R 20499864 intergenic Dic2 - chr3R 20499919 intergenic Dic2 - chr3R_12_20495001 chr3R_20495001 RAL-727 2054 chr3R 20513009 20513035 chr3R 20515712 20515738 opus 6 2703 5.5 4.5 5.0 1.0 2729 chr3R 20513009 intergenic not near genes chr3R 20514374 intergenic not near genes chr3R 20515738 intergenic not near genes chr3R_6_20510001 chr3R_20510001 RAL-727 2055 chr3R 20516540 20516559 chr3R 20516896 20516915 11 356 5.0 4.0 4.5 2.0 375 chr3R 20516540 intergenic not near genes chr3R 20516728 intergenic not near genes chr3R 20516915 intergenic not near genes chr3R_11_20515001 chr3R_20515001 RAL-727 2056 chr3R 20594480 20594513 chr3R 20594570 20594602 11 89 2.5 0.0 1.2 5.0 122 chr3R 20594480 intron bon + chr3R 20594541 intron bon + chr3R 20594602 intron bon + chr3R_11_20590001 chr3R_20590001 RAL-727 2057 chr3R 20596191 20596210 chr3R 20596278 20596297 5 87 5.5 3.0 4.2 1.0 106 chr3R 20596191 intron bon + chr3R 20596244 intron bon + chr3R 20596297 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-727 2058 chr3R 20686974 20686988 chr3R 20687409 20687423 9 434 3.5 10.0 6.8 1.2 449 chr3R 20686974 intergenic not near genes chr3R 20687198 intergenic not near genes chr3R 20687423 intergenic not near genes chr3R_9_20685001 chr3R_20685001 RAL-727 2059 chr3R 20703487 20703510 chr3R 20703881 20703904 5 394 6.0 2.5 4.2 1.0 417 chr3R 20703487 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703904 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-727 2060 chr3R 20730928 20731061 chr3R 20731028 20731149 9 95 0.5 0.0 0.2 7.5 221 chr3R 20730928 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731149 intergenic CG31205 + chr3R_9_20730001 chr3R_20730001 RAL-727 2061 chr3R 20733286 20733297 chr3R 20733361 20733373 5 75 10.0 5.0 7.5 0.6 87 chr3R 20733286 intergenic not near genes chr3R 20733330 intergenic not near genes chr3R 20733373 intergenic not near genes chr3R_5_20730001 chr3R_20730001 RAL-727 2062 chr3R 20733299 20733319 chr3R 20733360 20733395 15 70 4.5 5.0 4.8 2.6 96 chr3R 20733299 intergenic not near genes chr3R 20733347 intergenic not near genes chr3R 20733395 intergenic not near genes chr3R_15_20730001 chr3R_20730001 RAL-727 2063 chr3R 20787438 20787458 chr3R 20787529 20787549 10 91 2.5 4.5 3.5 2.2 111 chr3R 20787438 intron Syp + chr3R 20787494 intron Syp + chr3R 20787549 intron Syp + chr3R_10_20785001 chr3R_20785001 RAL-727 2064 chr3R 20850086 20850111 chr3R 20850171 20850196 12 85 2.5 2.0 2.2 3.8 110 chr3R 20850086 intergenic RpS30 + chr3R 20850141 intergenic RpS30 + chr3R 20850196 intergenic RpS30 + chr3R_12_20850001 chr3R_20850001 RAL-727 2065 chr3R 20899918 20899943 chr3R 20900014 20900039 10 96 0.5 6.5 3.5 2.2 121 chr3R 20899918 intergenic not near genes chr3R 20899978 intergenic not near genes chr3R 20900039 intergenic not near genes chr3R_10_20895001 chr3R_20895001 RAL-727 2066 chr3R 20966127 20966155 chr3R 20966210 20966238 15 81 0.5 5.5 3.0 3.8 111 chr3R 20966127 intron Atpalpha + chr3R 20966182 intron Atpalpha + chr3R 20966238 intron Atpalpha + chr3R_15_20965001 chr3R_20965001 RAL-727 2067 chr3R 20994962 20994979 chr3R 20995039 20995063 6 80 3.0 1.5 2.2 1.9 101 chr3R 20994962 intron Calx + chr3R 20995012 intron Calx + chr3R 20995063 intron Calx + chr3R_6_20995001 chr3R_20995001 RAL-727 2068 chr3R 20994980 20994984 chr3R 20995036 20995052 6 66 2.0 1.0 1.5 2.4 72 chr3R 20994980 intron Calx + chr3R 20995016 intron Calx + chr3R 20995052 intron Calx + chr3R_6_20995001 chr3R_20995001 RAL-727 2069 chr3R 21020404 21020431 chr3R 21020480 21020507 12 76 2.0 3.0 2.5 3.4 103 chr3R 21020404 3` UTR Rlip + chr3R 21020456 3` UTR Rlip + chr3R 21020507 3` UTR Rlip + chr3R_12_21020001 chr3R_21020001 RAL-727 2070 chr3R 21074810 21074829 chr3R 21075020 21075050 8 219 2.5 5.5 4.0 1.6 240 chr3R 21074810 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075050 intron dmrt93B + chr3R_8_21070001 chr3R_21070001 RAL-727 2071 chr3R 21108038 21108063 chr3R 21108299 21108324 9 260 2.0 2.0 2.0 3.0 286 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108181 intergenic Sec15 -,rtet + chr3R 21108324 intergenic rtet +,Sec15 - chr3R_9_21105001 chr3R_21105001 RAL-727 2072 chr3R 21132631 21132635 chr3R 21132714 21132718 5 83 4.0 0.0 2.0 1.7 87 chr3R 21132631 3` UTR Ice2 + chr3R 21132674 3` UTR Ice2 + chr3R 21132718 3` UTR Ice2 + chr3R_5_21130001 chr3R_21130001 RAL-727 2073 chr3R 21141679 21141704 chr3R 21150160 21150169 Tirant 11 8473 4.5 8.0 6.2 1.5 8490 chr3R 21141679 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150169 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-727 2074 chr3R 21154550 21154583 chr3R 21154755 21154798 11 211 5.5 0.0 2.8 2.9 248 chr3R 21154550 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_11_21150001 chr3R_21150001 RAL-727 2075 chr3R 21176806 21176839 chr3R 21176889 21176916 13 80 4.0 3.5 3.8 2.7 110 chr3R 21176806 intron SNF4Agamma + chr3R 21176861 intron SNF4Agamma + chr3R 21176916 intron SNF4Agamma + chr3R_13_21175001 chr3R_21175001 RAL-727 2076 chr3R 21383273 21383293 chr3R 21383353 21383373 5 80 1.0 2.5 1.8 1.8 100 chr3R 21383273 intergenic not near genes chr3R 21383323 intergenic not near genes chr3R 21383373 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-727 2077 chr3R 12928674 12928675 chr3R 21385636 21385639 4 8456963 21.5 1.0 11.2 0.3 8456965 chr3R 12928674 intron beat-Vb + chr3R 17157156 exon Mur89F - chr3R 21385639 intergenic not near genes chr3R_4_17155001 chr3R_17155001 RAL-727 2078 chr3R 21422530 21422555 chr3R 21422606 21422633 10 76 4.5 3.0 3.8 2.1 103 chr3R 21422530 intron lbl - chr3R 21422582 intron lbl - chr3R 21422633 intron lbl - chr3R_10_21420001 chr3R_21420001 RAL-727 2079 chr3R 21433163 21433197 chr3R 21433258 21433292 11 91 1.5 3.0 2.2 3.4 129 chr3R 21433163 intron lbl - chr3R 21433228 intron lbl - chr3R 21433292 exon lbl - chr3R_11_21430001 chr3R_21430001 RAL-727 2080 chr3R 21472016 21472035 chr3R 21472097 21472115 6 80 3.0 7.0 5.0 1.0 99 chr3R 21472016 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-727 2081 chr3R 21520126 21520144 chr3R 21520220 21520238 5 94 4.5 4.0 4.2 1.0 112 chr3R 21520126 intergenic not near genes chr3R 21520182 intergenic not near genes chr3R 21520238 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-727 2082 chr3R 21572816 21572832 chr3R 21572946 21572962 11 127 4.0 2.0 3.0 2.8 146 chr3R 21572816 3` UTR InR - chr3R 21572889 3` UTR InR - chr3R 21572962 3` UTR InR - chr3R_11_21570001 chr3R_21570001 RAL-727 2083 chr3R 21662362 21662370 chr3R 21662438 21662442 5 75 1.0 0.0 0.5 3.3 80 chr3R 21662362 intron CG6353 - chr3R 21662402 intron CG6353 - chr3R 21662442 intron CG6353 - chr3R_5_21660001 chr3R_21660001 RAL-727 2084 chr3R 21725669 21725691 chr3R 21725805 21725827 8 136 0.0 6.5 3.2 1.9 158 chr3R 21725669 intergenic not near genes chr3R 21725748 intergenic not near genes chr3R 21725827 intergenic not near genes chr3R_8_21725001 chr3R_21725001 RAL-727 2085 chr3R 21761120 21761151 chr3R 21768511 21768534 mdg1 9 7389 4.0 4.0 4.0 1.8 7414 chr3R 21761120 exon CG42335 + chr3R 21764827 intron CG42335 + chr3R 21768534 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-727 2086 chr3R 21858276 21858291 chr3R 21858348 21858351 7 81 6.0 3.5 4.8 1.2 75 chr3R 21858276 intergenic not near genes chr3R 21858314 intergenic not near genes chr3R 21858351 intergenic not near genes chr3R_7_21855001 chr3R_21855001 RAL-727 2087 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 23.0 25.5 24.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-727 2088 chr3R 21907534 21907534 chr3R 28831801 28831804 13 6924268 28.0 22.5 25.2 0.5 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-727 2089 chr3R 21907535 21907535 chr3R 28831801 28831802 31 6924266 28.0 22.5 25.2 1.2 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_31_25365001 chr3R_25365001 RAL-727 2090 chr3R 21907536 21907536 chr3R 28831801 28831805 28 6924266 28.0 22.5 25.2 1.1 6924269 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-727 2091 chr3R 21919006 21919016 chr3R 21919082 21919096 4 78 0.0 3.5 1.8 1.4 90 chr3R 21919006 intergenic not near genes chr3R 21919051 intergenic not near genes chr3R 21919096 intergenic not near genes chr3R_4_21915001 chr3R_21915001 RAL-727 2092 chr3R 21927367 21927392 chr3R 21927799 21927819 10 435 4.0 5.5 4.8 1.7 452 chr3R 21927367 intergenic not near genes chr3R 21927593 intergenic not near genes chr3R 21927819 intergenic not near genes chr3R_10_21925001 chr3R_21925001 RAL-727 2093 chr3R 21938065 21938079 chr3R 21938217 21938237 5 157 0.0 4.5 2.2 1.6 172 chr3R 21938065 intergenic not near genes chr3R 21938151 intergenic not near genes chr3R 21938237 intergenic not near genes chr3R_5_21935001 chr3R_21935001 RAL-727 2094 chr3R 21985509 21985534 chr3R 21986410 21986434 11 900 30.5 43.5 37.0 0.3 925 chr3R 21985509 intron Eip93F + chr3R 21985972 intron Eip93F + chr3R 21986434 intron Eip93F + chr3R_11_21985001 chr3R_21985001 RAL-727 2095 chr3R 22044841 22044869 chr3R 22044918 22044946 14 76 2.0 3.5 2.8 3.7 105 chr3R 22044841 intron how + chr3R 22044894 intron how + chr3R 22044946 intron how + chr3R_14_22040001 chr3R_22040001 RAL-727 2096 chr3R 22117414 22117448 chr3R 22117490 22117524 8 76 3.0 3.5 3.2 1.9 110 chr3R 22117414 intergenic Ir94b -,Ir94c - chr3R 22117469 intergenic Ir94c -,Ir94b - chr3R 22117524 intergenic Ir94c -,Ir94b - chr3R_8_22115001 chr3R_22115001 RAL-727 2097 chr3R 22182308 22182343 chr3R 22182439 22182474 10 130 2.5 3.5 3.0 2.5 166 chr3R 22182308 intron SKIP + chr3R 22182391 intron SKIP + chr3R 22182474 intron SKIP + chr3R_10_22180001 chr3R_22180001 RAL-727 2098 chr3R 22234685 22234715 chr3R 22236004 22236034 pogo 23 1317 2.5 4.5 3.5 5.1 1349 chr3R 22234685 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236034 intron SKIP + chr3R_23_22235001 chr3R_22235001 RAL-727 2099 chr3R 22239490 22239524 chr3R 22248549 22248584 roo 13 9059 6.0 4.0 5.0 2.2 9094 chr3R 22239490 intron SKIP + chr3R 22244037 intron SKIP + chr3R 22248584 intron SKIP + chr3R_13_22240001 chr3R_22240001 RAL-727 2100 chr3R 22433088 22433105 chr3R 22433188 22433205 4 100 6.0 8.5 7.2 0.5 117 chr3R 22433088 intron CG13847 - chr3R 22433146 intron CG13847 - chr3R 22433205 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-727 2101 chr3R 22450541 22450570 chr3R 22453181 22453210 NOF 14 2636 4.5 6.0 5.2 2.3 2669 chr3R 22450541 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_14_22450001 chr3R_22450001 RAL-727 2102 chr3R 22538446 22538474 chr3R 22538526 22538559 14 83 3.0 4.5 3.8 2.9 113 chr3R 22538446 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_14_22535001 chr3R_22535001 RAL-727 2103 chr3R 22591882 22591905 chr3R 22591975 22591998 15 92 9.0 9.0 9.0 1.5 116 chr3R 22591882 intron Efa6 + chr3R 22591940 intron Efa6 + chr3R 22591998 intron Efa6 + chr3R_15_22590001 chr3R_22590001 RAL-727 2104 chr3R 22597380 22597398 chr3R 22597457 22597470 6 75 5.0 2.0 3.5 1.3 90 chr3R 22597380 intron Efa6 + chr3R 22597425 intron Efa6 + chr3R 22597470 intron Efa6 + chr3R_6_22595001 chr3R_22595001 RAL-727 2105 chr3R 22711241 22711244 chr3R 22711304 22711320 6 72 2.0 7.5 4.8 1.0 79 chr3R 22711241 3` UTR wge - chr3R 22711280 3` UTR wge - chr3R 22711320 3` UTR wge - chr3R_6_22710001 chr3R_22710001 RAL-727 2106 chr3R 22711247 22711248 chr3R 22711303 22711324 6 71 1.0 7.5 4.2 1.2 77 chr3R 22711247 3` UTR wge - chr3R 22711286 3` UTR wge - chr3R 22711324 3` UTR wge - chr3R_6_22710001 chr3R_22710001 RAL-727 2107 chr3R 22797760 22797938 chr3R 22797846 22798034 21 92 0.5 0.5 0.5 14.0 274 chr3R 22797760 intergenic not near genes chr3R 22797897 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_21_22795001 chr3R_22795001 RAL-727 2108 chr3R 22828000 22828019 chr3R 22828095 22828114 5 95 5.0 10.5 7.8 0.6 114 chr3R 22828000 intergenic not near genes chr3R 22828057 intergenic not near genes chr3R 22828114 intergenic not near genes chr3R_5_22825001 chr3R_22825001 RAL-727 2109 chr3R 22846349 22846381 chr3R 22846824 22846831 6 472 2.0 9.0 5.5 0.9 482 chr3R 22846349 intergenic CG4704 - chr3R 22846590 intergenic CG4704 - chr3R 22846831 intergenic not near genes chr3R_6_22845001 chr3R_22845001 RAL-727 2110 chr3R 22860152 22860175 chr3R 22860243 22860260 6 91 1.5 1.0 1.2 2.7 108 chr3R 22860152 intergenic not near genes chr3R 22860206 intergenic not near genes chr3R 22860260 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-727 2111 chr3R 22880935 22880956 chr3R 22881073 22881094 10 138 1.5 6.0 3.8 2.1 159 chr3R 22880935 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881094 intergenic not near genes chr3R_10_22880001 chr3R_22880001 RAL-727 2112 chr3R 22881190 22881230 chr3R 22884896 22884925 Doc 5 3702 1.0 0.5 0.8 2.8 3735 chr3R 22881190 intergenic not near genes chr3R 22883058 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-727 2113 chr3R 22916736 22916760 chr3R 22916814 22916835 9 75 7.5 4.0 5.8 1.3 99 chr3R 22916736 intron klg + chr3R 22916786 intron klg + chr3R 22916835 intron klg + chr3R_9_22915001 chr3R_22915001 RAL-727 2114 chr3R 22953838 22953858 chr3R 22954481 22954510 12 649 5.5 0.5 3.0 3.0 672 chr3R 22953838 intron klg + chr3R 22954174 intron klg + chr3R 22954510 intron klg + chr3R_12_22950001 chr3R_22950001 RAL-727 2115 chr3R 22973627 22973662 chr3R 22973719 22973719 6 86 1.0 6.0 3.5 1.3 92 chr3R 22973627 intergenic not near genes chr3R 22973673 intergenic not near genes chr3R 22973719 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-727 2116 chr3R 22974284 22974304 chr3R 22974368 22974380 8 78 0.5 3.0 1.8 2.9 96 chr3R 22974284 intergenic not near genes chr3R 22974332 intergenic not near genes chr3R 22974380 intergenic not near genes chr3R_8_22970001 chr3R_22970001 RAL-727 2117 chr3R 23064175 23064202 chr3R 23064281 23064297 8 104 3.5 2.5 3.0 2.0 122 chr3R 23064175 exon CG17111 - chr3R 23064236 intron CG17111 - chr3R 23064297 exon CG17111 - chr3R_8_23060001 chr3R_23060001 RAL-727 2118 chr3R 23064874 23064899 chr3R 23064963 23064990 8 91 0.5 2.5 1.5 3.2 116 chr3R 23064874 intron CG17111 - chr3R 23064932 intron CG17111 - chr3R 23064990 intron CG17111 - chr3R_8_23060001 chr3R_23060001 RAL-727 2119 chr3R 23101384 23101411 chr3R 23101472 23101503 13 86 2.0 1.0 1.5 5.2 119 chr3R 23101384 intron CG13830 - chr3R 23101444 intron CG13830 - chr3R 23101503 intron CG13830 - chr3R_13_23100001 chr3R_23100001 RAL-727 2120 chr3R 23211981 23211986 chr3R 23212059 23212064 4 78 2.0 3.5 2.8 1.1 83 chr3R 23211981 intron cnc - chr3R 23212022 intron cnc - chr3R 23212064 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-727 2121 chr3R 23227253 23227260 chr3R 23227339 23227346 4 86 4.0 0.0 2.0 1.3 93 chr3R 23227253 intergenic CG4467 - chr3R 23227300 intergenic CG4467 - chr3R 23227346 intergenic CG4467 - chr3R_4_23225001 chr3R_23225001 RAL-727 2122 chr3R 23324034 23324054 chr3R 23324120 23324140 9 86 3.5 5.0 4.2 1.7 106 chr3R 23324034 intron pnt - chr3R 23324087 intron pnt - chr3R 23324140 intron pnt - chr3R_9_23320001 chr3R_23320001 RAL-727 2123 chr3R 23335437 23335466 chr3R 23335506 23335544 12 76 6.5 5.5 6.0 1.7 107 chr3R 23335437 intron pnt - chr3R 23335490 intron pnt - chr3R 23335544 intron pnt - chr3R_12_23335001 chr3R_23335001 RAL-727 2124 chr3R 23360180 23360214 chr3R 23360256 23360290 17 75 1.0 2.0 1.5 6.8 110 chr3R 23360180 3` UTR RpS3 + chr3R 23360235 intergenic RpS3 + chr3R 23360290 intergenic RpS3 + chr3R_17_23360001 chr3R_23360001 RAL-727 2125 chr3R 23558398 23558428 chr3R 23560179 23560209 Bari1 7 1781 1.0 4.5 2.8 1.8 1811 chr3R 23558398 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560209 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-727 2126 chr3R 23663859 23663883 chr3R 23664021 23664048 8 165 4.5 5.0 4.8 1.4 189 chr3R 23663859 intron CG31145 - chr3R 23663954 intron CG31145 - chr3R 23664048 intron CG31145 - chr3R_8_23660001 chr3R_23660001 RAL-727 2127 chr3R 23684709 23684730 chr3R 23685181 23685195 roo 8 474 1.5 5.0 3.2 1.9 486 chr3R 23684709 intron CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685195 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-727 2128 chr3R 23801576 23801603 chr3R 23801664 23801691 8 88 4.0 0.5 2.2 2.5 115 chr3R 23801576 3` UTR mbc + chr3R 23801634 3` UTR mbc + chr3R 23801691 intergenic CG33111 -,mbc + chr3R_8_23800001 chr3R_23800001 RAL-727 2129 chr3R 23826268 23826280 chr3R 23827857 23827859 4 1586 3.5 2.0 2.8 1.1 1591 chr3R 23826268 intron CG34355 + chr3R 23827064 intron CG34355 + chr3R 23827859 intron CG34355 + chr3R_4_23825001 chr3R_23825001 RAL-727 2130 chr3R 23835408 23835436 chr3R 23844557 23844586 roo 18 9150 6.0 11.0 8.5 1.9 9178 chr3R 23835408 intron CG34355 + chr3R 23839997 intron CG34355 + chr3R 23844586 intron CG34355 + chr3R_18_23835001 chr3R_23835001 RAL-727 2131 chr3R 23944917 23944933 chr3R 23945002 23945018 8 85 4.0 5.0 4.5 1.5 101 chr3R 23944917 intron CG12268 - chr3R 23944968 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-727 2132 chr3R 24011671 24011680 chr3R 24011754 24011763 6 83 2.5 0.0 1.2 2.7 92 chr3R 24011671 intron KrT95D - chr3R 24011717 intron KrT95D - chr3R 24011763 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-727 2133 chr3R 24021630 24021649 chr3R 24021720 24021739 10 90 4.0 5.5 4.8 1.7 109 chr3R 24021630 intron KrT95D - chr3R 24021684 intron KrT95D - chr3R 24021739 intron KrT95D - chr3R_10_24020001 chr3R_24020001 RAL-727 2134 chr3R 24034204 24034238 chr3R 24034385 24034419 24 181 4.0 9.0 6.5 3.2 215 chr3R 24034204 3` UTR Ime4 + chr3R 24034312 intergenic Miro -,Ime4 + chr3R 24034419 3` UTR Miro - chr3R_24_24030001 chr3R_24030001 RAL-727 2135 chr3R 24072085 24072118 chr3R 24072523 24072527 jockey 13 432 7.5 0.0 3.8 2.7 442 chr3R 24072085 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072527 intron 4EHP - chr3R_13_24070001 chr3R_24070001 RAL-727 2136 chr3R 24076919 24076948 chr3R 24078386 24078412 hobo 4 1466 4.0 5.0 4.5 0.7 1493 chr3R 24076919 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-727 2137 chr3R 24100640 24100653 chr3R 24100730 24100743 7 90 8.5 6.0 7.2 0.9 103 chr3R 24100640 intron 4EHP - chr3R 24100692 intron 4EHP - chr3R 24100743 intron 4EHP - chr3R_7_24100001 chr3R_24100001 RAL-727 2138 chr3R 24207223 24207246 chr3R 24212299 24212322 flea 12 5075 5.5 12.5 9.0 1.2 5099 chr3R 24207223 intron twin - chr3R 24209772 intron twin - chr3R 24212322 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-727 2139 chr3R 24431600 24431627 chr3R 24431679 24431706 7 76 4.5 2.5 3.5 1.6 106 chr3R 24431600 intron nAChRalpha1 - chr3R 24431653 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-727 2140 chr3R 24433478 24433504 chr3R 24433557 24433583 12 79 5.0 6.0 5.5 1.8 105 chr3R 24433478 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433583 intron nAChRalpha1 - chr3R_12_24430001 chr3R_24430001 RAL-727 2141 chr3R 24447722 24447753 chr3R 24447809 24447840 7 87 0.0 0.0 0.0 7.0 118 chr3R 24447722 intron nAChRalpha1 - chr3R 24447781 intron nAChRalpha1 - chr3R 24447840 intron nAChRalpha1 - chr3R_7_24445001 chr3R_24445001 RAL-727 2142 chr3R 24493272 24493310 chr3R 24493501 24493539 BS 16 228 4.5 7.5 6.0 2.3 267 chr3R 24493272 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_16_24490001 chr3R_24490001 RAL-727 2143 chr3R 24527802 24527835 chr3R 24527893 24527926 14 91 3.0 2.5 2.8 3.7 124 chr3R 24527802 intergenic CG6607 +,CG13618 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527926 intergenic CG6607 +,CG13618 + chr3R_14_24525001 chr3R_24525001 RAL-727 2144 chr3R 24670160 24670198 chr3R 24670244 24670282 21 82 3.0 4.5 3.8 4.4 122 chr3R 24670160 intron slo + chr3R 24670221 intron slo + chr3R 24670282 intron slo + chr3R_21_24670001 chr3R_24670001 RAL-727 2145 chr3R 24729879 24729907 chr3R 24732677 24732708 Doc 16 2800 4.0 4.0 4.0 3.2 2829 chr3R 24729879 intron tok + chr3R 24731294 intron tok + chr3R 24732708 intron tok + chr3R_16_24730001 chr3R_24730001 RAL-727 2146 chr3R 24790683 24790691 chr3R 24790763 24790773 8 81 10.5 6.5 8.5 0.8 90 chr3R 24790683 intron Ets96B + chr3R 24790728 intron Ets96B + chr3R 24790773 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-727 2147 chr3R 24790692 24790715 chr3R 24790762 24790779 9 73 8.0 6.5 7.2 1.1 87 chr3R 24790692 intron Ets96B + chr3R 24790736 intron Ets96B + chr3R 24790779 intron Ets96B + chr3R_9_24790001 chr3R_24790001 RAL-727 2148 chr3R 24912495 24912512 chr3R 24912577 24912594 6 82 3.5 7.0 5.2 1.0 99 chr3R 24912495 intergenic CR44267 + chr3R 24912544 intergenic CR44267 + chr3R 24912594 intergenic CR44267 + chr3R_6_24910001 chr3R_24910001 RAL-727 2149 chr3R 25004901 25004916 chr3R 25004984 25004999 5 83 1.0 2.5 1.8 1.8 98 chr3R 25004901 intron tnc + chr3R 25004950 intron tnc + chr3R 25004999 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-727 2150 chr3R 25008209 25008217 chr3R 25008283 25008295 4 76 6.5 7.0 6.8 0.5 86 chr3R 25008209 intron tnc + chr3R 25008252 intron tnc + chr3R 25008295 intron tnc + chr3R_4_25005001 chr3R_25005001 RAL-727 2151 chr3R 25166361 25166393 chr3R 25166437 25166469 13 76 1.5 4.5 3.0 3.2 108 chr3R 25166361 intergenic not near genes chr3R 25166415 intergenic not near genes chr3R 25166469 intergenic not near genes chr3R_13_25165001 chr3R_25165001 RAL-727 2152 chr3R 25268056 25268066 chr3R 25272651 25272655 4 4591 25.5 22.0 23.8 0.2 4599 chr3R 25268056 intron CR45214 - chr3R 25270356 exon,5` UTR CG11889 +,CG11891 + chr3R 25272655 3` UTR,exon CG11889 +,CG11891 + chr3R_4_25270001 chr3R_25270001 RAL-727 2153 chr3R 25300797 25300822 chr3R 25305563 25305588 6 4763 27.5 63.5 45.5 0.1 4791 chr3R 25300797 intergenic CG13659 + chr3R 25303192 exon CG31370 + chr3R 25305588 exon CG31436 + chr3R_6_25300001 chr3R_25300001 RAL-727 2154 chr3R 25303782 25303805 chr3R 25305650 25305673 8 1868 29.5 74.5 52.0 0.2 1891 chr3R 25303782 exon CG31370 + chr3R 25304728 exon CG31436 + chr3R 25305673 intergenic CG31436 + chr3R_8_25300001 chr3R_25300001 RAL-727 2155 chr3R 25300078 25300111 chr3R 25305935 25305956 24 5847 49.0 46.5 47.8 0.5 5878 chr3R 25300078 intergenic not near genes chr3R 25303017 exon CG31370 + chr3R 25305956 intergenic CG31436 +,CG10550 - chr3R_24_25300001 chr3R_25300001 RAL-727 2156 chr3R 25352483 25352491 chr3R 25352628 25352636 6 145 12.5 5.0 8.8 0.6 153 chr3R 25352483 intron Fur1 - chr3R 25352560 intron Fur1 - chr3R 25352636 intron Fur1 - chr3R_6_25350001 chr3R_25350001 RAL-727 2157 chr3R 25352494 25352508 chr3R 25352625 25352627 6 130 7.0 4.5 5.8 0.9 133 chr3R 25352494 intron Fur1 - chr3R 25352560 intron Fur1 - chr3R 25352627 intron Fur1 - chr3R_6_25350001 chr3R_25350001 RAL-727 2158 chr3R 25368486 25368501 chr3R 25368604 25368619 5 118 3.0 6.0 4.5 0.9 133 chr3R 25368486 intron Fur1 - chr3R 25368552 intron Fur1 - chr3R 25368619 intron Fur1 - chr3R_5_25365001 chr3R_25365001 RAL-727 2159 chr3R 25377404 25377433 chr3R 25377490 25377521 16 88 6.0 5.0 5.5 2.5 117 chr3R 25377404 intron Fur1 - chr3R 25377462 intron Fur1 - chr3R 25377521 intron Fur1 - chr3R_16_25375001 chr3R_25375001 RAL-727 2160 chr3R 25411790 25411806 chr3R 25411893 25411909 8 103 0.0 5.0 2.5 2.3 119 chr3R 25411790 intron Fur1 - chr3R 25411850 intron Fur1 - chr3R 25411909 intron Fur1 - chr3R_8_25410001 chr3R_25410001 RAL-727 2161 chr3R 25440788 25440805 chr3R 25440876 25440893 5 87 4.0 0.0 2.0 1.7 105 chr3R 25440788 intron Fur1 - chr3R 25440840 intron Fur1 - chr3R 25440893 intron Fur1 - chr3R_5_25440001 chr3R_25440001 RAL-727 2162 chr3R 25441837 25441856 chr3R 25442081 25442100 9 243 7.0 3.0 5.0 1.5 263 chr3R 25441837 intron Fur1 - chr3R 25441968 intron Fur1 - chr3R 25442100 intron Fur1 - chr3R_9_25440001 chr3R_25440001 RAL-727 2163 chr3R 25441857 25441869 chr3R 25442080 25442113 6 240 4.0 2.5 3.2 1.4 256 chr3R 25441857 intron Fur1 - chr3R 25441985 intron Fur1 - chr3R 25442113 intron Fur1 - chr3R_6_25440001 chr3R_25440001 RAL-727 2164 chr3R 25520985 25520993 chr3R 25521073 25521092 14 96 16.0 15.5 15.8 0.8 107 chr3R 25520985 intron msi + chr3R 25521038 intron msi + chr3R 25521092 intron msi + chr3R_14_25520001 chr3R_25520001 RAL-727 2165 chr3R 25519643 25519658 chr3R 25521406 25521422 4 1765 10.0 38.5 24.2 0.2 1779 chr3R 25519643 exon msi + chr3R 25520532 intron msi + chr3R 25521422 intron msi + chr3R_4_25520001 chr3R_25520001 RAL-727 2166 chr3R 25588071 25588105 chr3R 25588149 25588181 25 75 4.5 3.5 4.0 5.0 110 chr3R 25588071 intron msi + chr3R 25588126 intron msi + chr3R 25588181 intron msi + chr3R_25_25585001 chr3R_25585001 RAL-727 2167 chr3R 25597874 25597891 chr3R 25597957 25597974 10 83 3.5 0.5 2.0 3.3 100 chr3R 25597874 intron,intron msi +,ymp - chr3R 25597924 intron,intron msi +,ymp - chr3R 25597974 intron,intron msi +,ymp - chr3R_10_25595001 chr3R_25595001 RAL-727 2168 chr3R 25689127 25689163 chr3R 25689235 25689271 16 106 8.5 7.0 7.8 1.8 144 chr3R 25689127 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_16_25685001 chr3R_25685001 RAL-727 2169 chr3R 25720815 25720834 chr3R 25720900 25720919 10 85 0.0 8.0 4.0 2.0 104 chr3R 25720815 intron LpR2 - chr3R 25720867 intron LpR2 - chr3R 25720919 intron LpR2 - chr3R_10_25720001 chr3R_25720001 RAL-727 2170 chr3R 25725829 25725857 chr3R 25734989 25735017 roo 6 9160 2.5 4.0 3.2 1.4 9188 chr3R 25725829 intron LpR2 - chr3R 25730423 intron LpR2 - chr3R 25735017 intron LpR2 - chr3R_6_25730001 chr3R_25730001 RAL-727 2171 chr3R 25755198 25755228 chr3R 25756058 25756088 19 858 4.0 9.0 6.5 2.5 890 chr3R 25755198 intron LpR1 - chr3R 25755643 intron LpR1 - chr3R 25756088 intron LpR1 - chr3R_19_25755001 chr3R_25755001 RAL-727 2172 chr3R 25832695 25832722 chr3R 25841871 25841904 roo 9 9179 3.0 5.5 4.2 1.7 9209 chr3R 25832695 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841904 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-727 2173 chr3R 25884754 25884785 chr3R 25885104 25885134 8 350 4.0 3.0 3.5 1.8 380 chr3R 25884754 intron SppL + chr3R 25884944 intron SppL + chr3R 25885134 5` UTR SppL + chr3R_8_25880001 chr3R_25880001 RAL-727 2174 chr3R 25927506 25927538 chr3R 25927587 25927620 22 81 3.5 0.0 1.8 7.9 114 chr3R 25927506 intron CCAP-R - chr3R 25927563 intron CCAP-R - chr3R 25927620 intron CCAP-R - chr3R_22_25925001 chr3R_25925001 RAL-727 2175 chr3R 25932746 25932754 chr3R 25933138 25933144 5 391 6.5 4.5 5.5 0.8 398 chr3R 25932746 intron CCAP-R - chr3R 25932945 intron CCAP-R - chr3R 25933144 intron CCAP-R - chr3R_5_25930001 chr3R_25930001 RAL-727 2176 chr3R 26122461 26122477 chr3R 26122537 26122553 10 75 11.5 6.0 8.8 1.0 92 chr3R 26122461 intron CG31324 + chr3R 26122507 intron CG31324 + chr3R 26122553 intron CG31324 + chr3R_10_26120001 chr3R_26120001 RAL-727 2177 chr3R 26126550 26126570 chr3R 26126636 26126643 9 83 5.5 8.0 6.8 1.2 93 chr3R 26126550 intron CG31324 + chr3R 26126596 intron CG31324 + chr3R 26126643 intron CG31324 + chr3R_9_26125001 chr3R_26125001 RAL-727 2178 chr3R 26157751 26157784 chr3R 26157832 26157865 12 80 4.0 8.0 6.0 1.7 114 chr3R 26157751 intergenic not near genes chr3R 26157808 intergenic not near genes chr3R 26157865 intergenic not near genes chr3R_12_26155001 chr3R_26155001 RAL-727 2179 chr3R 26166639 26166670 chr3R 26166732 26166763 33 92 4.0 4.5 4.2 6.3 124 chr3R 26166639 intergenic not near genes chr3R 26166701 intergenic not near genes chr3R 26166763 intergenic not near genes chr3R_33_26165001 chr3R_26165001 RAL-727 2180 chr3R 26239827 26239855 chr3R 26240138 26240166 11 311 3.5 2.5 3.0 2.8 339 chr3R 26239827 intron CR42745 + chr3R 26239996 intron CR42745 + chr3R 26240166 intron CR42745 + chr3R_11_26235001 chr3R_26235001 RAL-727 2181 chr3R 17227312 17227315 chr3R 26242104 26242114 4 9014794 14.5 8.0 11.2 0.3 9014802 chr3R 17227312 intergenic not near genes chr3R 21734713 intergenic not near genes chr3R 26242114 intron CR42745 + chr3R_4_21730001 chr3R_21730001 RAL-727 2182 chr3R 26292106 26292139 chr3R 26292186 26292218 15 79 3.0 2.5 2.8 3.9 112 chr3R 26292106 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292218 intergenic not near genes chr3R_15_26290001 chr3R_26290001 RAL-727 2183 chr3R 26332890 26332914 chr3R 26332977 26333003 12 87 3.0 7.0 5.0 2.0 113 chr3R 26332890 intron CG33970 + chr3R 26332946 intron CG33970 + chr3R 26333003 intron CG33970 + chr3R_12_26330001 chr3R_26330001 RAL-727 2184 chr3R 26370339 26370350 chr3R 26370424 26370435 5 85 0.0 6.5 3.2 1.2 96 chr3R 26370339 intergenic not near genes chr3R 26370387 intergenic not near genes chr3R 26370435 intergenic not near genes chr3R_5_26370001 chr3R_26370001 RAL-727 2185 chr3R 26374844 26374857 chr3R 26374946 26374959 9 102 3.0 5.0 4.0 1.8 115 chr3R 26374844 intergenic not near genes chr3R 26374902 intergenic not near genes chr3R 26374959 intergenic not near genes chr3R_9_26370001 chr3R_26370001 RAL-727 2186 chr3R 26376327 26376358 chr3R 26385487 26385496 roo 5 9149 2.5 3.5 3.0 1.2 9169 chr3R 26376327 intergenic not near genes chr3R 26380912 intergenic not near genes chr3R 26385496 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-727 2187 chr3R 26405921 26405938 chr3R 26405997 26406014 7 76 1.0 1.5 1.2 3.2 93 chr3R 26405921 intergenic not near genes chr3R 26405968 intergenic not near genes chr3R 26406014 intergenic not near genes chr3R_7_26405001 chr3R_26405001 RAL-727 2188 chr3R 26541006 26541031 chr3R 26541085 26541110 16 78 1.0 6.0 3.5 3.6 104 chr3R 26541006 intron scrib + chr3R 26541058 intron scrib + chr3R 26541110 intron scrib + chr3R_16_26540001 chr3R_26540001 RAL-727 2189 chr3R 26542055 26542063 chr3R 26542135 26542154 8 86 11.5 5.0 8.2 0.9 99 chr3R 26542055 intron scrib + chr3R 26542104 intron scrib + chr3R 26542154 intron scrib + chr3R_8_26540001 chr3R_26540001 RAL-727 2190 chr3R 26558326 26558359 chr3R 26565639 26565646 Stalker4 9 7308 4.5 4.5 4.5 1.6 7320 chr3R 26558326 intron scrib + chr3R 26561986 intron scrib + chr3R 26565646 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-727 2191 chr3R 26568066 26568100 chr3R 26568147 26568181 31 77 1.5 8.5 5.0 5.2 115 chr3R 26568066 intron scrib + chr3R 26568124 intron scrib + chr3R 26568181 intron scrib + chr3R_31_26565001 chr3R_26565001 RAL-727 2192 chr3R 26575009 26575025 chr3R 26575087 26575102 9 78 5.0 2.5 3.8 1.9 93 chr3R 26575009 exon scrib + chr3R 26575056 intron scrib + chr3R 26575102 intron scrib + chr3R_9_26575001 chr3R_26575001 RAL-727 2193 chr3R 26575027 26575039 chr3R 26575086 26575118 5 71 2.0 2.5 2.2 1.6 91 chr3R 26575027 exon scrib + chr3R 26575072 intron scrib + chr3R 26575118 intron scrib + chr3R_5_26575001 chr3R_26575001 RAL-727 2194 chr3R 26641644 26641653 chr3R 26641723 26641733 4 81 6.0 2.5 4.2 0.8 89 chr3R 26641644 intergenic not near genes chr3R 26641688 intergenic not near genes chr3R 26641733 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-727 2195 chr3R 26642730 26642759 chr3R 26643123 26643152 jockey 15 393 8.0 4.0 6.0 2.1 422 chr3R 26642730 intergenic not near genes chr3R 26642941 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_15_26640001 chr3R_26640001 RAL-727 2196 chr3R 26687809 26687833 chr3R 26687886 26687910 9 77 4.0 7.5 5.8 1.3 101 chr3R 26687809 intergenic not near genes chr3R 26687860 intergenic not near genes chr3R 26687910 intergenic not near genes chr3R_9_26685001 chr3R_26685001 RAL-727 2197 chr3R 26770241 26770244 chr3R 26770318 26770321 4 77 12.5 5.5 9.0 0.4 80 chr3R 26770241 intergenic CR45563 + chr3R 26770281 intergenic CR45563 + chr3R 26770321 intergenic CR45563 + chr3R_4_26770001 chr3R_26770001 RAL-727 2198 chr3R 26770251 26770274 chr3R 26770317 26770351 12 76 3.0 5.5 4.2 2.3 100 chr3R 26770251 intergenic CR45563 + chr3R 26770301 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_12_26770001 chr3R_26770001 RAL-727 2199 chr3R 26772711 26772716 chr3R 26772783 26772810 6 83 4.5 9.0 6.8 0.8 99 chr3R 26772711 intergenic not near genes chr3R 26772760 intergenic not near genes chr3R 26772810 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-727 2200 chr3R 26810553 26810586 chr3R 26811038 26811071 roo 16 484 5.0 8.0 6.5 2.1 518 chr3R 26810553 intron Tl + chr3R 26810812 intron Tl + chr3R 26811071 intron Tl + chr3R_16_26810001 chr3R_26810001 RAL-727 2201 chr3R 26842385 26842411 chr3R 26842462 26842488 7 77 1.5 2.0 1.8 2.5 103 chr3R 26842385 3` UTR Tl + chr3R 26842436 intergenic Lerp -,Tl + chr3R 26842488 3` UTR Lerp - chr3R_7_26840001 chr3R_26840001 RAL-727 2202 chr3R 26983803 26983834 chr3R 26983886 26983917 9 83 0.0 4.0 2.0 3.0 114 chr3R 26983803 intron CG14253 + chr3R 26983860 intron CG14253 + chr3R 26983917 intron CG14253 + chr3R_9_26980001 chr3R_26980001 RAL-727 2203 chr3R 27007408 27007431 chr3R 27016543 27016566 roo 11 9135 7.5 4.0 5.8 1.6 9158 chr3R 27007408 intron RYa-R + chr3R 27011987 intron RYa-R + chr3R 27016566 intron RYa-R + chr3R_11_27010001 chr3R_27010001 RAL-727 2204 chr3R 27019514 27019541 chr3R 27019610 27019637 4 92 2.0 12.5 7.2 0.5 123 chr3R 27019514 intron,exon RYa-R +,CG17191 - chr3R 27019576 intron,exon RYa-R +,CG17191 - chr3R 27019637 intron,intron RYa-R +,CG17191 - chr3R_4_27015001 chr3R_27015001 RAL-727 2205 chr3R 27027688 27027720 chr3R 27027770 27027801 6 82 2.0 5.0 3.5 1.3 113 chr3R 27027688 intron RYa-R + chr3R 27027744 intron RYa-R + chr3R 27027801 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-727 2206 chr3R 27028722 27028756 chr3R 27028801 27028835 12 79 3.0 2.0 2.5 3.4 113 chr3R 27028722 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_12_27025001 chr3R_27025001 RAL-727 2207 chr3R 27037968 27037991 chr3R 27038074 27038097 10 106 4.0 3.0 3.5 2.2 129 chr3R 27037968 intron RYa-R + chr3R 27038032 intron RYa-R + chr3R 27038097 intron RYa-R + chr3R_10_27035001 chr3R_27035001 RAL-727 2208 chr3R 27077755 27077789 chr3R 27077842 27077877 11 88 2.5 6.5 4.5 2.0 122 chr3R 27077755 intron CG14257 + chr3R 27077816 intron CG14257 + chr3R 27077877 intron CG14257 + chr3R_11_27075001 chr3R_27075001 RAL-727 2209 chr3R 27101551 27101563 chr3R 27101657 27101669 6 106 2.5 5.0 3.8 1.2 118 chr3R 27101551 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101669 intron CG17189 + chr3R_6_27100001 chr3R_27100001 RAL-727 2210 chr3R 27107161 27107192 chr3R 27107384 27107415 19 222 5.5 6.0 5.8 2.8 254 chr3R 27107161 intergenic not near genes chr3R 27107288 intergenic not near genes chr3R 27107415 intergenic not near genes chr3R_19_27105001 chr3R_27105001 RAL-727 2211 chr3R 27140518 27140548 chr3R 27148125 27148158 412 24 7608 8.5 5.5 7.0 3.0 7640 chr3R 27140518 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_24_27140001 chr3R_27140001 RAL-727 2212 chr3R 27152373 27152408 chr3R 27152459 27152493 16 81 4.5 6.5 5.5 2.5 120 chr3R 27152373 intron Men-b + chr3R 27152433 intron Men-b + chr3R 27152493 intron Men-b + chr3R_16_27150001 chr3R_27150001 RAL-727 2213 chr3R 27275842 27275875 chr3R 27275926 27275959 17 84 3.5 4.5 4.0 3.4 117 chr3R 27275842 intron CG5938 + chr3R 27275900 intron CG5938 + chr3R 27275959 intron CG5938 + chr3R_17_27275001 chr3R_27275001 RAL-727 2214 chr3R 27329476 27329498 chr3R 27329553 27329575 14 77 5.0 3.0 4.0 2.8 99 chr3R 27329476 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329575 intergenic CG3330 - chr3R_14_27325001 chr3R_27325001 RAL-727 2215 chr3R 27342792 27342825 chr3R 27351373 27351384 Tirant 17 8579 3.5 6.5 5.0 2.8 8592 chr3R 27342792 intron CG42534 + chr3R 27347088 intron CG42534 + chr3R 27351384 intron CG42534 + chr3R_17_27345001 chr3R_27345001 RAL-727 2216 chr3R 27393749 27393781 chr3R 27393833 27393862 15 83 5.5 2.0 3.8 3.1 113 chr3R 27393749 intron side - chr3R 27393806 intron side - chr3R 27393862 intron side - chr3R_15_27390001 chr3R_27390001 RAL-727 2217 chr3R 27443403 27443419 chr3R 27443480 27443496 15 76 6.0 6.0 6.0 2.1 93 chr3R 27443403 intergenic not near genes chr3R 27443450 intergenic not near genes chr3R 27443496 intergenic not near genes chr3R_15_27440001 chr3R_27440001 RAL-727 2218 chr3R 27460269 27460295 chr3R 27460370 27460388 14 109 3.0 6.5 4.8 2.4 119 chr3R 27460269 intergenic not near genes chr3R 27460328 intergenic not near genes chr3R 27460388 intergenic not near genes chr3R_14_27460001 chr3R_27460001 RAL-727 2219 chr3R 27469857 27469887 chr3R 27469957 27469987 11 99 5.0 5.5 5.2 1.8 130 chr3R 27469857 intergenic not near genes chr3R 27469922 intergenic not near genes chr3R 27469987 intergenic not near genes chr3R_11_27465001 chr3R_27465001 RAL-727 2220 chr3R 27473763 27473798 chr3R 27474018 27474052 19 253 7.0 3.5 5.2 3.1 289 chr3R 27473763 intergenic not near genes chr3R 27473908 intergenic not near genes chr3R 27474052 intergenic not near genes chr3R_19_27470001 chr3R_27470001 RAL-727 2221 chr3R 27479162 27479190 chr3R 27479273 27479301 8 109 2.0 4.5 3.2 1.9 139 chr3R 27479162 exon Cyp6a18 + chr3R 27479232 exon Cyp6a18 + chr3R 27479301 exon Cyp6a18 + chr3R_8_27475001 chr3R_27475001 RAL-727 2222 chr3R 27496593 27496602 chr3R 27496698 27496707 5 105 8.0 4.5 6.2 0.7 114 chr3R 27496593 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496707 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-727 2223 chr3R 27521158 27521187 chr3R 27530367 27530396 roo 8 9207 1.5 3.0 2.2 2.5 9238 chr3R 27521158 intron CG12885 + chr3R 27525777 intron CG12885 + chr3R 27530396 intron CG12885 + chr3R_8_27525001 chr3R_27525001 RAL-727 2224 chr3R 27660712 27660748 chr3R 27660788 27660824 19 74 4.0 8.0 6.0 2.7 112 chr3R 27660712 intergenic not near genes chr3R 27660768 intergenic not near genes chr3R 27660824 intergenic not near genes chr3R_19_27660001 chr3R_27660001 RAL-727 2225 chr3R 27706776 27706803 chr3R 27706853 27706879 14 76 9.5 3.0 6.2 1.9 103 chr3R 27706776 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706879 intergenic CG12428 -,CG12877 + chr3R_14_27705001 chr3R_27705001 RAL-727 2226 chr3R 27725574 27725593 chr3R 27731015 27731035 I-element 7 5442 2.0 6.0 4.0 1.4 5461 chr3R 27725574 intergenic not near genes chr3R 27728304 intergenic not near genes chr3R 27731035 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-727 2227 chr3R 27798095 27798110 chr3R 27798577 27798591 6 478 3.5 3.5 3.5 1.3 496 chr3R 27798095 intron CG34353 - chr3R 27798343 intron CG34353 - chr3R 27798591 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-727 2228 chr3R 27799941 27799963 chr3R 27800023 27800038 12 81 7.0 4.0 5.5 1.8 97 chr3R 27799941 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800038 intron CG34353 - chr3R_12_27795001 chr3R_27795001 RAL-727 2229 chr3R 27856761 27856791 chr3R 27858243 27858257 hopper2 15 1479 7.5 6.0 6.8 1.9 1496 chr3R 27856761 intron CG34353 - chr3R 27857509 intron CG34353 - chr3R 27858257 intron CG34353 - chr3R_15_27855001 chr3R_27855001 RAL-727 2230 chr3R 27860653 27860684 chr3R 27860755 27860788 9 103 3.0 3.0 3.0 2.2 135 chr3R 27860653 intron CG34353 - chr3R 27860720 intron CG34353 - chr3R 27860788 intron CG34353 - chr3R_9_27860001 chr3R_27860001 RAL-727 2231 chr3R 27862955 27862984 chr3R 27868259 27868284 Transpac 11 5302 5.0 6.0 5.5 1.7 5329 chr3R 27862955 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_11_27865001 chr3R_27865001 RAL-727 2232 chr3R 27875699 27875733 chr3R 27882753 27882779 297 20 7054 3.0 7.0 5.0 3.3 7080 chr3R 27875699 intron CG34353 - chr3R 27879239 intron CG34353 - chr3R 27882779 intron CG34353 - chr3R_20_27875001 chr3R_27875001 RAL-727 2233 chr3R 28068495 28068520 chr3R 28073937 28073962 I-element 7 5440 5.0 4.5 4.8 1.2 5467 chr3R 28068495 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-727 2234 chr3R 28173676 28173704 chr3R 28181106 28181134 mdg1 13 7430 4.0 5.5 4.8 2.2 7458 chr3R 28173676 intron CG34354 + chr3R 28177405 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_13_28175001 chr3R_28175001 RAL-727 2235 chr3R 28209976 28209999 chr3R 28210052 28210072 12 75 5.0 7.5 6.2 1.7 96 chr3R 28209976 intron CG34354 + chr3R 28210024 intron CG34354 + chr3R 28210072 intron CG34354 + chr3R_12_28210001 chr3R_28210001 RAL-727 2236 chr3R 28223259 28223284 chr3R 28223345 28223370 13 86 3.5 1.0 2.2 4.1 111 chr3R 28223259 intron CG34354 + chr3R 28223314 intron CG34354 + chr3R 28223370 intron CG34354 + chr3R_13_28220001 chr3R_28220001 RAL-727 2237 chr3R 28253345 28253373 chr3R 28255847 28255862 jockey 14 2504 3.0 5.0 4.0 2.8 2517 chr3R 28253345 intergenic not near genes chr3R 28254604 intergenic not near genes chr3R 28255862 intergenic not near genes chr3R_14_28250001 chr3R_28250001 RAL-727 2238 chr3R 28351968 28351990 chr3R 28352044 28352065 6 76 6.0 2.5 4.2 1.2 97 chr3R 28351968 intergenic Or98b + chr3R 28352016 intergenic Or98b + chr3R 28352065 intergenic Or98b + chr3R_6_28350001 chr3R_28350001 RAL-727 2239 chr3R 28357586 28357611 chr3R 28357664 28357698 13 81 7.5 3.0 5.2 2.1 112 chr3R 28357586 intergenic not near genes chr3R 28357642 intergenic not near genes chr3R 28357698 intergenic not near genes chr3R_13_28355001 chr3R_28355001 RAL-727 2240 chr3R 28407702 28407741 chr3R 28407788 28407814 16 84 3.0 2.0 2.5 4.6 112 chr3R 28407702 intergenic not near genes chr3R 28407758 intergenic not near genes chr3R 28407814 intergenic not near genes chr3R_16_28405001 chr3R_28405001 RAL-727 2241 chr3R 28411602 28411606 chr3R 28411699 28411704 4 98 4.5 13.0 8.8 0.4 102 chr3R 28411602 intergenic not near genes chr3R 28411653 intergenic not near genes chr3R 28411704 intergenic not near genes chr3R_4_28410001 chr3R_28410001 RAL-727 2242 chr3R 28429255 28429284 chr3R 28429490 28429519 8 234 5.5 6.5 6.0 1.1 264 chr3R 28429255 intron beat-VI + chr3R 28429387 intron beat-VI + chr3R 28429519 intron beat-VI + chr3R_8_28425001 chr3R_28425001 RAL-727 2243 chr3R 28478491 28478523 chr3R 28478564 28478599 12 74 5.0 4.0 4.5 2.2 108 chr3R 28478491 intergenic not near genes chr3R 28478545 intergenic not near genes chr3R 28478599 intergenic not near genes chr3R_12_28475001 chr3R_28475001 RAL-727 2244 chr3R 28554492 28554514 chr3R 28554854 28554870 8 358 2.5 0.0 1.2 3.6 378 chr3R 28554492 intergenic not near genes chr3R 28554681 intergenic not near genes chr3R 28554870 intergenic not near genes chr3R_8_28550001 chr3R_28550001 RAL-727 2245 chr3R 28594102 28594131 chr3R 28594181 28594210 8 77 0.0 8.0 4.0 1.6 108 chr3R 28594102 5` UTR CR43440 + chr3R 28594156 5` UTR CR43440 + chr3R 28594210 5` UTR CR43440 + chr3R_8_28590001 chr3R_28590001 RAL-727 2246 chr3R 28616475 28616500 chr3R 28616568 28616594 14 94 3.0 5.0 4.0 2.8 119 chr3R 28616475 intron CG10011 - chr3R 28616534 intron CG10011 - chr3R 28616594 intron CG10011 - chr3R_14_28615001 chr3R_28615001 RAL-727 2247 chr3R 28744533 28744547 chr3R 28744668 28744678 6 140 3.5 4.0 3.8 1.2 145 chr3R 28744533 5` UTR AstA-R2 - chr3R 28744606 5` UTR AstA-R2 - chr3R 28744678 5` UTR AstA-R2 - chr3R_6_28740001 chr3R_28740001 RAL-727 2248 chr3R 28758283 28758304 chr3R 28763900 28763921 roo 11 5615 7.5 0.0 3.8 2.3 5638 chr3R 28758283 intergenic aqrs - chr3R 28761102 intergenic not near genes chr3R 28763921 intergenic not near genes chr3R_11_28760001 chr3R_28760001 RAL-727 2249 chr3R 28792880 28792899 chr3R 28797962 28797994 jockey 7 5090 0.5 4.5 2.5 2.0 5114 chr3R 28792880 intergenic not near genes chr3R 28795437 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-727 2250 chr3R 28811568 28811603 chr3R 28811714 28811749 15 145 3.0 3.0 3.0 3.8 181 chr3R 28811568 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811749 intergenic CG1646 +,wdn - chr3R_15_28810001 chr3R_28810001 RAL-727 2251 chr3R 21907534 21907536 chr3R 28831799 28831803 66 6924266 28.0 23.0 25.5 2.5 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_66_25365001 chr3R_25365001 RAL-727 2252 chr3R 28853388 28853408 chr3R 28853464 28853484 7 76 3.5 3.0 3.2 1.7 96 chr3R 28853388 intron spg + chr3R 28853436 intron spg + chr3R 28853484 intron spg + chr3R_7_28850001 chr3R_28850001 RAL-727 2253 chr3R 28960507 28960544 chr3R 28960592 28960629 14 85 1.0 2.0 1.5 5.6 122 chr3R 28960507 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960629 intron CG14521 - chr3R_14_28960001 chr3R_28960001 RAL-727 2254 chr3R 28985074 28985092 chr3R 28985178 28985196 4 104 3.5 4.5 4.0 0.8 122 chr3R 28985074 intergenic not near genes chr3R 28985135 intergenic not near genes chr3R 28985196 intergenic not near genes chr3R_4_28985001 chr3R_28985001 RAL-727 2255 chr3R 28989904 28989933 chr3R 28990079 28990108 9 175 6.5 3.5 5.0 1.5 204 chr3R 28989904 intergenic not near genes chr3R 28990006 intergenic not near genes chr3R 28990108 intergenic not near genes chr3R_9_28990001 chr3R_28990001 RAL-727 2256 chr3R 21907535 21907536 chr3R 29013339 29013339 8 7105804 28.0 15.0 21.5 0.4 7105804 chr3R 21907535 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013339 intron wat - chr3R_8_25460001 chr3R_25460001 RAL-727 2257 chr3R 21907534 21907534 chr3R 29013340 29013340 5 7105806 28.0 15.0 21.5 0.2 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-727 2258 chr3R 29054018 29054050 chr3R 29054094 29054126 11 75 3.5 1.5 2.5 3.1 108 chr3R 29054018 intergenic CG11842 +,CG11843 + chr3R 29054072 intergenic CG11842 +,CG11843 + chr3R 29054126 intergenic CG11842 +,CG11843 + chr3R_11_29050001 chr3R_29050001 RAL-727 2259 chr3R 29070054 29070080 chr3R 29070135 29070161 13 81 5.0 4.5 4.8 2.2 107 chr3R 29070054 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070161 intron CG11873 + chr3R_13_29070001 chr3R_29070001 RAL-727 2260 chr3R 29079398 29079409 chr3R 29080770 29080781 NOF 10 1372 1.0 3.5 2.2 3.1 1383 chr3R 29079398 intron CG11873 + chr3R 29080090 intron CG11873 + chr3R 29080781 intron CG11873 + chr3R_10_29080001 chr3R_29080001 RAL-727 2261 chr3R 29213059 29213092 chr3R 29213142 29213175 24 82 5.5 6.0 5.8 3.5 116 chr3R 29213059 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_24_29210001 chr3R_29210001 RAL-727 2262 chr3R 29237272 29237280 chr3R 29239283 29239284 9 2015 11.0 12.0 11.5 0.7 2012 chr3R 29237272 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239284 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-727 2263 chr3R 29240475 29240504 chr3R 29240558 29240588 12 84 0.5 2.5 1.5 4.8 113 chr3R 29240475 intergenic CG31445 -,CG31427 - chr3R 29240532 intergenic CG31445 -,CG31427 - chr3R 29240588 3` UTR CG31445 - chr3R_12_29240001 chr3R_29240001 RAL-727 2264 chr3R 29257576 29257583 chr3R 29257827 29257833 4 252 2.5 0.0 1.2 1.8 257 chr3R 29257576 intergenic CG45544 + chr3R 29257704 intergenic CG45544 + chr3R 29257833 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-727 2265 chr3R 29319822 29319856 chr3R 29320141 29320175 jockey 10 318 3.0 6.0 4.5 1.8 353 chr3R 29319822 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320175 intergenic not near genes chr3R_10_29315001 chr3R_29315001 RAL-727 2266 chr3R 29375990 29376229 chr3R 29376076 29376305 5 82 0.5 2.5 1.5 2.0 315 chr3R 29375990 intergenic not near genes chr3R 29376148 intergenic not near genes chr3R 29376305 intergenic not near genes chr3R_5_29375001 chr3R_29375001 RAL-727 2267 chr3R 29406622 29406640 chr3R 29407900 29407926 jockey 5 1284 6.0 1.5 3.8 1.0 1304 chr3R 29406622 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-727 2268 chr3R 29446993 29447024 chr3R 29447080 29447111 11 85 5.5 4.5 5.0 1.8 118 chr3R 29446993 intron Ptp99A + chr3R 29447052 intron Ptp99A + chr3R 29447111 intron Ptp99A + chr3R_11_29445001 chr3R_29445001 RAL-727 2269 chr3R 29472013 29472036 chr3R 29472105 29472128 5 91 2.0 2.5 2.2 1.6 115 chr3R 29472013 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472128 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-727 2270 chr3R 29494392 29494419 chr3R 29494623 29494635 5 227 6.0 4.0 5.0 0.8 243 chr3R 29494392 intergenic Diedel +,CG2010 + chr3R 29494514 intergenic Diedel +,CG2010 + chr3R 29494635 intergenic CG2010 +,Diedel + chr3R_5_29490001 chr3R_29490001 RAL-727 2271 chr3R 29575836 29575847 chr3R 29575919 29575930 6 83 1.0 0.0 0.5 4.0 94 chr3R 29575836 intergenic not near genes chr3R 29575883 intergenic not near genes chr3R 29575930 intergenic not near genes chr3R_6_29575001 chr3R_29575001 RAL-727 2272 chr3R 29581557 29581569 chr3R 29581638 29581650 7 81 0.0 9.0 4.5 1.3 93 chr3R 29581557 intergenic not near genes chr3R 29581604 intergenic not near genes chr3R 29581650 intergenic not near genes chr3R_7_29580001 chr3R_29580001 RAL-727 2273 chr3R 29669512 29669537 chr3R 29669876 29669902 7 361 5.0 6.0 5.5 1.1 390 chr3R 29669512 exon ppk30 + chr3R 29669707 exon ppk30 + chr3R 29669902 exon ppk30 + chr3R_7_29665001 chr3R_29665001 RAL-727 2274 chr3R 29702150 29702160 chr3R 29702231 29702231 4 78 4.5 1.0 2.8 1.1 81 chr3R 29702150 intergenic not near genes chr3R 29702190 intergenic not near genes chr3R 29702231 intergenic not near genes chr3R_4_29700001 chr3R_29700001 RAL-727 2275 chr3R 29738273 29738296 chr3R 29739730 29739746 hobo 15 1463 4.5 2.0 3.2 3.6 1473 chr3R 29738273 intergenic CG1969 +,CG7598 + chr3R 29739010 intron CG1969 + chr3R 29739746 5` UTR CG1969 + chr3R_15_29735001 chr3R_29735001 RAL-727 2276 chr3R 29758942 29758949 chr3R 29759020 29759027 6 78 13.0 11.5 12.2 0.5 85 chr3R 29758942 3` UTR CR44953 - chr3R 29758984 3` UTR CR44953 - chr3R 29759027 3` UTR CR44953 - chr3R_6_29755001 chr3R_29755001 RAL-727 2277 chr3R 29758957 29758970 chr3R 29759018 29759048 11 72 6.5 10.5 8.5 1.2 91 chr3R 29758957 3` UTR CR44953 - chr3R 29759002 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_11_29755001 chr3R_29755001 RAL-727 2278 chr3R 29760373 29760392 chr3R 29761567 29761593 pogo 13 1199 3.0 9.5 6.2 1.8 1220 chr3R 29760373 intergenic not near genes chr3R 29760983 intergenic not near genes chr3R 29761593 intergenic not near genes chr3R_13_29760001 chr3R_29760001 RAL-727 2279 chr3R 29768474 29768491 chr3R 29768566 29768583 6 91 0.0 0.0 0.0 6.0 109 chr3R 29768474 intron kay + chr3R 29768528 intron kay + chr3R 29768583 intron kay + chr3R_6_29765001 chr3R_29765001 RAL-727 2280 chr3R 29880582 29880613 chr3R 29880667 29880673 10 76 3.5 1.5 2.5 2.9 91 chr3R 29880582 intron CG31038 + chr3R 29880628 intron CG31038 + chr3R 29880673 intron CG31038 + chr3R_10_29880001 chr3R_29880001 RAL-727 2281 chr3R 29881009 29881035 chr3R 29881095 29881121 9 86 3.5 7.0 5.2 1.5 112 chr3R 29881009 intron CG31038 + chr3R 29881065 intron CG31038 + chr3R 29881121 intron CG31038 + chr3R_9_29880001 chr3R_29880001 RAL-727 2282 chr3R 29882017 29882052 chr3R 29891174 29891209 roo 17 9156 6.5 6.0 6.2 2.4 9192 chr3R 29882017 intron CG31038 + chr3R 29886613 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_17_29885001 chr3R_29885001 RAL-727 2283 chr3R 29966066 29966073 chr3R 29966140 29966149 5 76 4.5 8.5 6.5 0.7 83 chr3R 29966066 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966149 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-727 2284 chr3R 30013391 30013407 chr3R 30013489 30013500 4 94 1.5 12.5 7.0 0.5 109 chr3R 30013391 intron CG7920 - chr3R 30013446 intron CG7920 - chr3R 30013500 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-727 2285 chr3R 30082989 30083022 chr3R 30083064 30083073 6 70 8.0 1.5 4.8 1.0 84 chr3R 30082989 intron sima + chr3R 30083031 intron sima + chr3R 30083073 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-727 2286 chr3R 30084849 30084884 chr3R 30086316 30086351 hobo 18 1465 1.5 5.0 3.2 4.3 1502 chr3R 30084849 intron sima + chr3R 30085600 intron sima + chr3R 30086351 intron sima + chr3R_18_30085001 chr3R_30085001 RAL-727 2287 chr3R 30170761 30170792 chr3R 30170848 30170879 20 87 7.5 9.5 8.5 2.1 118 chr3R 30170761 intron CG31028 - chr3R 30170820 intron CG31028 - chr3R 30170879 intron CG31028 - chr3R_20_30170001 chr3R_30170001 RAL-727 2288 chr3R 30175590 30175596 chr3R 30175946 30175953 4 357 0.0 9.5 4.8 0.7 363 chr3R 30175590 intergenic CG1983 - chr3R 30175772 intergenic CG1983 - chr3R 30175953 3` UTR CG1983 - chr3R_4_30175001 chr3R_30175001 RAL-727 2289 chr3R 30177746 30177769 chr3R 30177860 30177885 4 116 4.5 2.5 3.5 0.9 139 chr3R 30177746 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177885 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-727 2290 chr3R 30210668 30210673 chr3R 30210735 30210753 5 77 0.0 7.0 3.5 1.1 85 chr3R 30210668 intergenic CecA1 +,Anp + chr3R 30210710 intergenic CecA1 +,Anp + chr3R 30210753 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-727 2291 chr3R 30238760 30238796 chr3R 30239924 30239960 1360 6 1164 3.0 0.0 1.5 2.4 1200 chr3R 30238760 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239960 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-727 2292 chr3R 30246305 30246315 chr3R 30246383 30246383 4 76 0.0 0.0 0.0 4.0 78 chr3R 30246305 intron CG9733 - chr3R 30246344 intron CG9733 - chr3R 30246383 intron CG9733 - chr3R_4_30245001 chr3R_30245001 RAL-727 2293 chr3R 30260367 30260396 chr3R 30260442 30260472 18 75 6.0 11.0 8.5 1.9 105 chr3R 30260367 intergenic not near genes chr3R 30260420 intergenic not near genes chr3R 30260472 intergenic not near genes chr3R_18_30260001 chr3R_30260001 RAL-727 2294 chr3R 30267999 30268263 chr3R 30268081 30268340 7 79 6.0 6.0 6.0 1.0 341 chr3R 30267999 intergenic not near genes chr3R 30268170 intergenic not near genes chr3R 30268340 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-727 2295 chr3R 30317326 30317355 chr3R 30324918 30324943 roo 11 7589 2.5 6.5 4.5 2.0 7617 chr3R 30317326 intron hdc + chr3R 30321134 intron hdc + chr3R 30324943 intron hdc + chr3R_11_30320001 chr3R_30320001 RAL-727 2296 chr3R 30332031 30332062 chr3R 30332110 30332127 15 76 4.0 6.5 5.2 2.4 96 chr3R 30332031 intron hdc + chr3R 30332079 intron hdc + chr3R 30332127 intron hdc + chr3R_15_30330001 chr3R_30330001 RAL-727 2297 chr3R 30347030 30347034 chr3R 30347114 30347118 4 84 6.0 13.5 9.8 0.4 88 chr3R 30347030 intron hdc + chr3R 30347074 intron hdc + chr3R 30347118 intron hdc + chr3R_4_30345001 chr3R_30345001 RAL-727 2298 chr3R 30356270 30356281 chr3R 30356673 30356680 6 402 4.5 8.0 6.2 0.8 410 chr3R 30356270 intron hdc + chr3R 30356475 intron hdc + chr3R 30356680 intron hdc + chr3R_6_30355001 chr3R_30355001 RAL-727 2299 chr3R 30375554 30375570 chr3R 30383177 30383193 412 7 7623 2.5 5.0 3.8 1.5 7639 chr3R 30375554 intergenic not near genes chr3R 30379374 intergenic not near genes chr3R 30383193 intergenic not near genes chr3R_7_30375001 chr3R_30375001 RAL-727 2300 chr3R 30396216 30396247 chr3R 30404482 30404513 roo 16 8266 5.5 6.0 5.8 2.4 8297 chr3R 30396216 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_16_30400001 chr3R_30400001 RAL-727 2301 chr3R 30456404 30456423 chr3R 30456485 30456495 6 78 5.0 3.0 4.0 1.2 91 chr3R 30456404 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456495 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-727 2302 chr3R 30461493 30461512 chr3R 30461610 30461629 12 116 7.5 5.5 6.5 1.6 136 chr3R 30461493 intron CDase + chr3R 30461561 intron CDase + chr3R 30461629 intron CDase + chr3R_12_30460001 chr3R_30460001 RAL-727 2303 chr3R 30461514 30461523 chr3R 30461607 30461639 7 113 5.0 5.5 5.2 1.1 125 chr3R 30461514 intron CDase + chr3R 30461576 intron CDase + chr3R 30461639 intron CDase + chr3R_7_30460001 chr3R_30460001 RAL-727 2304 chr3R 30480481 30480507 chr3R 30482949 30482975 jockey 7 2464 4.0 5.5 4.8 1.2 2494 chr3R 30480481 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-727 2305 chr3R 30485064 30485068 chr3R 30485140 30485144 5 76 4.5 6.5 5.5 0.8 80 chr3R 30485064 intron PH4alphaEFB + chr3R 30485104 intron PH4alphaEFB + chr3R 30485144 intron PH4alphaEFB + chr3R_5_30485001 chr3R_30485001 RAL-727 2306 chr3R 30549014 30549039 chr3R 30549104 30549131 18 91 4.0 4.0 4.0 3.6 117 chr3R 30549014 intron tmod + chr3R 30549072 intron tmod + chr3R 30549131 intron tmod + chr3R_18_30545001 chr3R_30545001 RAL-727 2307 chr3R 30571705 30571716 chr3R 30571784 30571796 4 80 1.5 1.0 1.2 1.8 91 chr3R 30571705 intron tmod + chr3R 30571750 intron tmod + chr3R 30571796 intron tmod + chr3R_4_30570001 chr3R_30570001 RAL-727 2308 chr3R 30591322 30591338 chr3R 30591424 30591440 5 102 0.5 5.0 2.8 1.3 118 chr3R 30591322 intergenic not near genes chr3R 30591381 intergenic not near genes chr3R 30591440 intergenic not near genes chr3R_5_30590001 chr3R_30590001 RAL-727 2309 chr3R 30627610 30627638 chr3R 30627690 30627696 10 75 4.5 3.0 3.8 2.1 86 chr3R 30627610 exon CG2267 - chr3R 30627653 exon CG2267 - chr3R 30627696 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-727 2310 chr3R 30672232 30672270 chr3R 30672320 30672358 16 86 1.0 4.0 2.5 4.6 126 chr3R 30672232 intergenic not near genes chr3R 30672295 intergenic not near genes chr3R 30672358 intergenic not near genes chr3R_16_30670001 chr3R_30670001 RAL-727 2311 chr3R 30679517 30679549 chr3R 30686986 30687018 blood 11 7468 1.5 3.5 2.5 3.1 7501 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-727 2312 chr3R 30690169 30690191 chr3R 30690251 30690261 4 80 4.5 7.0 5.8 0.6 92 chr3R 30690169 intergenic Spn100A + chr3R 30690215 intergenic Spn100A + chr3R 30690261 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-727 2313 chr3R 30700867 30700877 chr3R 30700990 30701000 6 123 3.5 0.5 2.0 2.0 133 chr3R 30700867 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701000 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-727 2314 chr3R 30818811 30818845 chr3R 30820376 30820410 1360 15 1564 2.0 9.0 5.5 2.3 1599 chr3R 30818811 intron cindr + chr3R 30819610 intron cindr + chr3R 30820410 intron cindr + chr3R_15_30815001 chr3R_30815001 RAL-727 2315 chr3R 30841953 30841978 chr3R 30842072 30842094 11 117 8.5 4.5 6.5 1.5 141 chr3R 30841953 3` UTR CG15544 + chr3R 30842024 3` UTR CG15544 + chr3R 30842094 intergenic CG15544 + chr3R_11_30840001 chr3R_30840001 RAL-727 2316 chr3R 30859405 30859426 chr3R 30859483 30859483 10 76 4.0 2.5 3.2 2.4 78 chr3R 30859405 intergenic not near genes chr3R 30859444 intergenic not near genes chr3R 30859483 intergenic not near genes chr3R_10_30855001 chr3R_30855001 RAL-727 2317 chr3R 30900523 30900555 chr3R 30900603 30900627 6 78 4.5 7.0 5.8 0.9 104 chr3R 30900523 3` UTR Cyp4c3 + chr3R 30900575 3` UTR Cyp4c3 + chr3R 30900627 3` UTR Cyp4c3 + chr3R_6_30900001 chr3R_30900001 RAL-727 2318 chr3R 30948075 30948109 chr3R 30948266 30948300 15 190 2.5 2.5 2.5 4.3 225 chr3R 30948075 intergenic not near genes chr3R 30948188 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_15_30945001 chr3R_30945001 RAL-727 2319 chr3R 30965854 30965887 chr3R 30965940 30965973 8 85 3.0 2.0 2.5 2.3 119 chr3R 30965854 intergenic not near genes chr3R 30965914 intergenic not near genes chr3R 30965973 intergenic not near genes chr3R_8_30965001 chr3R_30965001 RAL-727 2320 chr3R 31069643 31069672 chr3R 31069738 31069767 17 93 6.5 5.5 6.0 2.4 124 chr3R 31069643 intron Sox100B + chr3R 31069705 intron Sox100B + chr3R 31069767 intron Sox100B + chr3R_17_31065001 chr3R_31065001 RAL-727 2321 chr3R 31074229 31074260 chr3R 31081827 31081857 springer 13 7597 5.0 3.5 4.2 2.5 7628 chr3R 31074229 intron Sox100B + chr3R 31078043 intron Sox100B + chr3R 31081857 intron Sox100B + chr3R_13_31075001 chr3R_31075001 RAL-727 2322 chr3R 31087115 31087131 chr3R 31087616 31087639 12 507 2.5 8.5 5.5 1.8 524 chr3R 31087115 intergenic not near genes chr3R 31087377 intergenic not near genes chr3R 31087639 intergenic not near genes chr3R_12_31085001 chr3R_31085001 RAL-727 2323 chr3R 31156486 31156506 chr3R 31156568 31156587 5 80 3.5 2.0 2.8 1.3 101 chr3R 31156486 intron Gycbeta100B + chr3R 31156536 intron Gycbeta100B + chr3R 31156587 intron Gycbeta100B + chr3R_5_31155001 chr3R_31155001 RAL-727 2324 chr3R 31279387 31279402 chr3R 31285565 31285593 diver 11 6185 7.0 3.5 5.2 1.8 6206 chr3R 31279387 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285593 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-727 2325 chr3R 31338146 31338180 chr3R 31338368 31338373 15 219 3.5 7.0 5.2 2.4 227 chr3R 31338146 intron CG34347 + chr3R 31338260 intron CG34347 + chr3R 31338373 intron CG34347 + chr3R_15_31335001 chr3R_31335001 RAL-727 2326 chr3R 31354859 31354878 chr3R 31354939 31354942 12 78 2.5 7.0 4.8 2.1 83 chr3R 31354859 intron CG34347 + chr3R 31354900 intron CG34347 + chr3R 31354942 intron CG34347 + chr3R_12_31350001 chr3R_31350001 RAL-727 2327 chr3R 31382810 31382839 chr3R 31383224 31383235 7 402 37.5 38.5 38.0 0.2 425 chr3R 31382810 intron CG1607 + chr3R 31383022 intron CG1607 + chr3R 31383235 intron CG1607 + chr3R_7_31380001 chr3R_31380001 RAL-727 2328 chr3R 31413087 31413119 chr3R 31418287 31418314 copia 20 5198 3.5 0.5 2.0 6.7 5227 chr3R 31413087 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418314 intron Gprk2 + chr3R_20_31415001 chr3R_31415001 RAL-727 2329 chr3R 31412145 31412154 chr3R 31419856 31419865 copia 4 7711 12.0 13.5 12.8 0.3 7720 chr3R 31412145 intron Gprk2 + chr3R 31416005 intron Gprk2 + chr3R 31419865 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-727 2330 chr3R 31425002 31425018 chr3R 31425088 31425100 6 86 6.5 5.0 5.8 0.9 98 chr3R 31425002 intron Gprk2 + chr3R 31425051 intron Gprk2 + chr3R 31425100 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-727 2331 chr3R 31426881 31426908 chr3R 31426972 31427000 16 92 8.5 4.0 6.2 2.2 119 chr3R 31426881 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427000 intron Gprk2 + chr3R_16_31425001 chr3R_31425001 RAL-727 2332 chr3R 31434113 31434119 chr3R 31434207 31434213 5 94 1.0 0.0 0.5 3.3 100 chr3R 31434113 intron Gprk2 + chr3R 31434163 intron Gprk2 + chr3R 31434213 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-727 2333 chr3R 31435361 31435389 chr3R 31435513 31435541 20 150 7.5 6.5 7.0 2.5 180 chr3R 31435361 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_20_31435001 chr3R_31435001 RAL-727 2334 chr3R 31477368 31477386 chr3R 31477536 31477554 10 165 3.0 4.5 3.8 2.1 186 chr3R 31477368 intergenic not near genes chr3R 31477461 intergenic not near genes chr3R 31477554 intergenic not near genes chr3R_10_31475001 chr3R_31475001 RAL-727 2335 chr3R 31691530 31691561 chr3R 31696296 31696327 Doc 13 4762 5.5 7.5 6.5 1.7 4797 chr3R 31691530 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_13_31690001 chr3R_31690001 RAL-727 2336 chr3R 31829402 31829412 chr3R 31829453 31829470 4 59 0.5 2.5 1.5 1.6 68 chr3R 31829402 intron RhoGAP100F + chr3R 31829436 intron RhoGAP100F + chr3R 31829470 intron RhoGAP100F + chr3R_4_31825001 chr3R_31825001 RAL-727 2337 chr3R 31874857 31874880 chr3R 31874923 31874955 12 75 6.5 5.0 5.8 1.8 98 chr3R 31874857 intron heph - chr3R 31874906 intron heph - chr3R 31874955 intron heph - chr3R_12_31870001 chr3R_31870001 RAL-727 2338 chr3R 31885680 31885707 chr3R 31885757 31885784 17 77 4.5 6.0 5.2 2.7 104 chr3R 31885680 intron heph - chr3R 31885732 intron heph - chr3R 31885784 intron heph - chr3R_17_31885001 chr3R_31885001 RAL-727 2339 chr3R 31924599 31924605 chr3R 31924680 31924685 6 81 0.0 13.5 6.8 0.8 86 chr3R 31924599 intron heph - chr3R 31924642 intron heph - chr3R 31924685 intron heph - chr3R_6_31920001 chr3R_31920001 RAL-727 2340 chr3R 31931194 31931214 chr3R 31931277 31931297 5 83 3.5 7.0 5.2 0.8 103 chr3R 31931194 intron heph - chr3R 31931246 intron heph - chr3R 31931297 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-727 2341 chr3R 31997990 31998025 chr3R 32005460 32005495 blood 17 7469 5.0 5.0 5.0 2.8 7505 chr3R 31997990 intron heph - chr3R 32001742 intron heph - chr3R 32005495 intron heph - chr3R_17_32000001 chr3R_32000001 RAL-727 2342 chr4 319987 320006 chr4 328163 328182 Stalker2 7 8176 7.5 5.0 6.2 1.0 8195 chr4 319987 3` UTR CG32850 + chr4 324084 intron CG32850 + chr4 328182 3` UTR CG32850 + chr4_7_320001 chr4_320001 RAL-727 2343 chr4 671604 671636 chr4 680187 680219 Tirant 26 8580 8.0 7.5 7.8 3.0 8615 chr4 671604 intron CG11360 + chr4 675912 intron CG11360 + chr4 680219 intron CG11360 + chr4_26_675001 chr4_675001 RAL-727 2344 chr4 959625 959653 chr4 959800 959832 19 179 2.0 7.5 4.8 3.3 207 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959728 5` UTR CR44030 + chr4 959832 5` UTR CR44030 + chr4_19_955001 chr4_955001 RAL-727 2345 chr4 972491 972527 chr4 972573 972609 12 82 2.0 6.0 4.0 2.4 118 chr4 972491 intron fuss - chr4 972550 intron fuss - chr4 972609 intron fuss - chr4_12_970001 chr4_970001 RAL-727 2346 chrX 295859 295882 chrX 303479 303502 412 7 7619 3.5 6.5 5.0 1.2 7643 chrX 295859 intron CG3777 + chrX 299680 intron CG3777 + chrX 303502 intron CG3777 + chrX_7_295001 chrX_295001 RAL-727 2347 chrX 318471 318501 chrX 323557 323587 flea 11 5083 3.0 2.0 2.5 3.1 5116 chrX 318471 intron,intron CG3777 +,CG32816 - chrX 321029 intron,intron CG3777 +,CG32816 - chrX 323587 intron,intron CG3777 +,CG32816 - chrX_11_320001 chrX_320001 RAL-727 2348 chrX 428416 428450 chrX 434601 434631 3S18 15 6183 11.5 3.5 7.5 1.8 6215 chrX 428416 intron CG32816 - chrX 431524 intron CG32816 - chrX 434631 intron CG32816 - chrX_15_430001 chrX_430001 RAL-727 2349 chrX 440994 441020 chrX 441071 441098 14 77 4.0 1.5 2.8 3.7 104 chrX 440994 intron CG32816 - chrX 441046 intron CG32816 - chrX 441098 intron CG32816 - chrX_14_440001 chrX_440001 RAL-727 2350 chrX 450365 450395 chrX 450443 450473 13 78 4.5 4.0 4.2 2.5 108 chrX 450365 intron CG32816 - chrX 450419 intron CG32816 - chrX 450473 intron CG32816 - chrX_13_450001 chrX_450001 RAL-727 2351 chrX 494599 494616 chrX 494691 494708 8 92 12.5 7.5 10.0 0.7 109 chrX 494599 intergenic CG17778 + chrX 494654 5` UTR CG17778 + chrX 494708 5` UTR CG17778 + chrX_8_490001 chrX_490001 RAL-727 2352 chrX 547630 547665 chrX 547874 547909 28 243 3.5 3.0 3.2 6.7 279 chrX 547630 intron Appl + chrX 547770 intron Appl + chrX 547909 intron Appl + chrX_28_545001 chrX_545001 RAL-727 2353 chrX 551424 551453 chrX 558986 558989 412 6 7557 3.5 2.0 2.8 1.6 7565 chrX 551424 intron Appl + chrX 555206 intron Appl + chrX 558989 intron Appl + chrX_6_555001 chrX_555001 RAL-727 2354 chrX 611135 611167 chrX 611225 611240 18 86 5.0 3.0 4.0 3.6 105 chrX 611135 intron CG13366 - chrX 611188 intron CG13366 - chrX 611240 intron CG13366 - chrX_18_610001 chrX_610001 RAL-727 2355 chrX 667648 667675 chrX 667732 667750 10 83 3.5 2.0 2.8 2.6 102 chrX 667648 intergenic not near genes chrX 667699 intergenic not near genes chrX 667750 intergenic not near genes chrX_10_665001 chrX_665001 RAL-727 2356 chrX 670268 670296 chrX 670348 670376 8 77 0.0 2.5 1.2 3.6 108 chrX 670268 intergenic not near genes chrX 670322 intergenic not near genes chrX 670376 intergenic not near genes chrX_8_670001 chrX_670001 RAL-727 2357 chrX 680842 680854 chrX 680925 680937 7 82 10.5 4.0 7.2 0.9 95 chrX 680842 intergenic not near genes chrX 680890 intergenic not near genes chrX 680937 intergenic not near genes chrX_7_680001 chrX_680001 RAL-727 2358 chrX 680855 680867 chrX 680921 680950 7 78 5.5 4.0 4.8 1.2 95 chrX 680855 intergenic not near genes chrX 680902 intergenic not near genes chrX 680950 intergenic not near genes chrX_7_680001 chrX_680001 RAL-727 2359 chrX 695118 695120 chrX 695245 695248 4 128 5.5 5.5 5.5 0.6 130 chrX 695118 intron sdk + chrX 695183 intron sdk + chrX 695248 intron sdk + chrX_4_695001 chrX_695001 RAL-727 2360 chrX 695122 695325 chrX 695239 695401 31 95 5.0 2.5 3.8 6.5 279 chrX 695122 intron sdk + chrX 695262 intron sdk + chrX 695401 intron sdk + chrX_31_695001 chrX_695001 RAL-727 2361 chrX 706810 706825 chrX 707162 707166 6 354 0.0 7.0 3.5 1.3 356 chrX 706810 intron sdk + chrX 706988 intron sdk + chrX 707166 intron sdk + chrX_6_705001 chrX_705001 RAL-727 2362 chrX 715285 715314 chrX 715355 715355 7 65 3.5 1.0 2.2 2.2 70 chrX 715285 intron sdk + chrX 715320 intron sdk + chrX 715355 intron sdk + chrX_7_715001 chrX_715001 RAL-727 2363 chrX 802302 802315 chrX 802372 802392 7 76 0.5 10.5 5.5 1.1 90 chrX 802302 exon CG13359 - chrX 802347 exon CG13359 - chrX 802392 exon CG13359 - chrX_7_800001 chrX_800001 RAL-727 2364 chrX 812266 812300 chrX 817897 817928 297 11 5628 5.5 2.5 4.0 2.2 5662 chrX 812266 intron CG43867 - chrX 815097 intron CG43867 - chrX 817928 intron CG43867 - chrX_11_815001 chrX_815001 RAL-727 2365 chrX 827600 827631 chrX 835392 835423 roo 10 7792 6.0 7.5 6.8 1.3 7823 chrX 827600 intron CG43867 - chrX 831512 intron CG43867 - chrX 835423 intron CG43867 - chrX_10_830001 chrX_830001 RAL-727 2366 chrX 1051070 1051080 chrX 1051148 1051158 6 77 18.5 8.5 13.5 0.4 88 chrX 1051070 intron CR44779 + chrX 1051114 intron CR44779 + chrX 1051158 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-727 2367 chrX 1091953 1091985 chrX 1092125 1092157 12 171 3.0 4.5 3.8 2.5 204 chrX 1091953 intron CG3655 - chrX 1092055 intron CG3655 - chrX 1092157 intron CG3655 - chrX_12_1090001 chrX_1090001 RAL-727 2368 chrX 1163303 1163329 chrX 1163380 1163407 15 76 4.0 5.0 4.5 2.7 104 chrX 1163303 intergenic CG34320 - chrX 1163355 intergenic CG34320 - chrX 1163407 intergenic CG34320 - chrX_15_1160001 chrX_1160001 RAL-727 2369 chrX 1185557 1185594 chrX 1185636 1185673 27 78 1.5 4.5 3.0 6.8 116 chrX 1185557 intron CG14626 + chrX 1185615 intron CG14626 + chrX 1185673 intron CG14626 + chrX_27_1185001 chrX_1185001 RAL-727 2370 chrX 1357777 1357787 chrX 1367945 1367957 Doc 4 10170 10.0 6.5 8.2 0.4 10180 chrX 1357777 intergenic png - chrX 1362867 intergenic not near genes chrX 1367957 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-727 2371 chrX 1357789 1357805 chrX 1367941 1367975 Doc 8 10167 4.5 6.0 5.2 1.3 10186 chrX 1357789 intergenic png - chrX 1362882 intergenic not near genes chrX 1367975 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-727 2372 chrX 1518045 1518074 chrX 1523438 1523476 jockey 15 5396 5.0 10.0 7.5 1.8 5431 chrX 1518045 intergenic inc + chrX 1520760 intergenic not near genes chrX 1523476 intergenic not near genes chrX_15_1520001 chrX_1520001 RAL-727 2373 chrX 1627972 1627999 chrX 1635440 1635452 gtwin 7 7464 2.5 3.0 2.8 1.8 7480 chrX 1627972 intron,intron Mur2B -,br + chrX 1631712 intron,intron Mur2B -,br + chrX 1635452 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-727 2374 chrX 1674855 1674874 chrX 1674931 1674950 10 76 8.0 0.5 4.2 1.9 95 chrX 1674855 3` UTR CG32809 - chrX 1674902 3` UTR CG32809 - chrX 1674950 3` UTR CG32809 - chrX_10_1670001 chrX_1670001 RAL-727 2375 chrX 1930535 1930570 chrX 1938106 1938141 opus 14 7568 1.5 4.5 3.0 3.5 7606 chrX 1930535 intergenic CG11596 + chrX 1934338 intergenic not near genes chrX 1938141 3` UTR CG3857 - chrX_14_1930001 chrX_1930001 RAL-727 2376 chrX 2254465 2254476 chrX 2254541 2254552 5 76 9.0 7.5 8.2 0.5 87 chrX 2254465 3` UTR CG3078 - chrX 2254508 3` UTR CG3078 - chrX 2254552 3` UTR CG3078 - chrX_5_2250001 chrX_2250001 RAL-727 2377 chrX 2399837 2399868 chrX 2408188 2408216 roo 7 8351 3.0 4.5 3.8 1.5 8379 chrX 2399837 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408216 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-727 2378 chrX 2578807 2578844 chrX 2578899 2578936 15 91 2.0 6.0 4.0 3.0 129 chrX 2578807 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_15_2575001 chrX_2575001 RAL-727 2379 chrX 2610388 2610390 chrX 2617505 2617507 HMS-Beagle 4 7117 4.0 1.5 2.8 1.1 7119 chrX 2610388 intergenic CG8636 - chrX 2613948 intergenic not near genes chrX 2617507 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-727 2380 chrX 2664384 2664416 chrX 2665530 2665562 1360 17 1143 6.5 4.0 5.2 2.7 1178 chrX 2664384 intron sgg + chrX 2664973 intron sgg + chrX 2665562 intron sgg + chrX_17_2660001 chrX_2660001 RAL-727 2381 chrX 2844910 2844931 chrX 2852320 2852341 mdg1 5 7410 3.5 5.5 4.5 0.9 7431 chrX 2844910 intron kirre + chrX 2848626 intron kirre + chrX 2852341 intron kirre + chrX_5_2845001 chrX_2845001 RAL-727 2382 chrX 2969737 2969767 chrX 2969823 2969853 15 85 5.5 1.5 3.5 3.3 116 chrX 2969737 intron,intron kirre +,rst - chrX 2969795 intron,intron kirre +,rst - chrX 2969853 intron,intron kirre +,rst - chrX_15_2965001 chrX_2965001 RAL-727 2383 chrX 2972036 2972055 chrX 2972176 2972193 4 136 7.0 3.5 5.2 0.6 157 chrX 2972036 intron,intron kirre +,rst - chrX 2972114 intron,intron kirre +,rst - chrX 2972193 intron,intron kirre +,rst - chrX_4_2970001 chrX_2970001 RAL-727 2384 chrX 3028807 3028814 chrX 3028895 3028902 4 88 4.0 2.0 3.0 1.0 95 chrX 3028807 intron kirre + chrX 3028854 intron kirre + chrX 3028902 intron kirre + chrX_4_3025001 chrX_3025001 RAL-727 2385 chrX 3058020 3058049 chrX 3058261 3058290 pogo 8 241 4.5 4.0 4.2 1.5 270 chrX 3058020 intron kirre + chrX 3058155 intron kirre + chrX 3058290 intron kirre + chrX_8_3055001 chrX_3055001 RAL-727 2386 chrX 3075636 3075667 chrX 3080942 3080973 Transpac 7 5305 2.0 7.5 4.8 1.2 5337 chrX 3075636 intron kirre + chrX 3078304 intron kirre + chrX 3080973 intron kirre + chrX_7_3075001 chrX_3075001 RAL-727 2387 chrX 3111076 3111091 chrX 3111156 3111157 4 76 2.0 0.0 1.0 2.0 81 chrX 3111076 intron kirre + chrX 3111116 intron kirre + chrX 3111157 intron kirre + chrX_4_3110001 chrX_3110001 RAL-727 2388 chrX 3203465 3203496 chrX 3203663 3203695 7 198 3.0 2.0 2.5 2.0 230 chrX 3203465 intron dnc + chrX 3203580 intron dnc + chrX 3203695 intron dnc + chrX_7_3200001 chrX_3200001 RAL-727 2389 chrX 3218507 3218539 chrX 3227656 3227688 roo 4 9149 0.5 1.5 1.0 2.0 9181 chrX 3218507 intron dnc + chrX 3223098 intron dnc + chrX 3227688 intron dnc + chrX_4_3220001 chrX_3220001 RAL-727 2390 chrX 3243631 3243660 chrX 3243721 3243750 8 90 2.5 5.0 3.8 1.7 119 chrX 3243631 intron dnc + chrX 3243690 intron dnc + chrX 3243750 intron dnc + chrX_8_3240001 chrX_3240001 RAL-727 2391 chrX 3268341 3268372 chrX 3268845 3268876 12 503 4.0 3.5 3.8 2.5 535 chrX 3268341 intron dnc + chrX 3268608 intron dnc + chrX 3268876 intron dnc + chrX_12_3265001 chrX_3265001 RAL-727 2392 chrX 3306345 3306367 chrX 3306427 3306439 17 81 2.5 0.0 1.2 7.7 94 chrX 3306345 intron dnc + chrX 3306392 intron dnc + chrX 3306439 intron dnc + chrX_17_3305001 chrX_3305001 RAL-727 2393 chrX 3415025 3415049 chrX 3421201 3421230 3S18 6 6182 3.0 2.5 2.8 1.6 6205 chrX 3415025 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421230 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-727 2394 chrX 3493089 3493120 chrX 3502248 3502279 roo 4 9159 3.0 0.5 1.8 1.4 9190 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502279 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-727 2395 chrX 3595032 3595049 chrX 3595093 3595127 4 74 2.0 5.0 3.5 0.9 95 chrX 3595032 intron AstA-R1 + chrX 3595080 intron AstA-R1 + chrX 3595127 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-727 2396 chrX 3597549 3597584 chrX 3619717 3619752 roo 12 22167 5.0 2.0 3.5 2.7 22203 chrX 3597549 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619752 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-727 2397 chrX 3629849 3629875 chrX 3629934 3629960 6 85 4.5 3.0 3.8 1.2 111 chrX 3629849 intron AstA-R1 + chrX 3629904 intron AstA-R1 + chrX 3629960 intron AstA-R1 + chrX_6_3625001 chrX_3625001 RAL-727 2398 chrX 3713101 3713135 chrX 3713209 3713244 5 109 5.5 3.0 4.2 1.0 143 chrX 3713101 intron Rala - chrX 3713172 intron Rala - chrX 3713244 intron Rala - chrX_5_3710001 chrX_3710001 RAL-727 2399 chrX 3726764 3726797 chrX 3730160 3730194 NOF 13 3393 3.0 6.5 4.8 2.2 3430 chrX 3726764 intron tlk + chrX 3728479 intron tlk + chrX 3730194 intron tlk + chrX_13_3725001 chrX_3725001 RAL-727 2400 chrX 3842325 3842352 chrX 3842566 3842593 pogo 14 240 1.5 3.0 2.2 4.4 268 chrX 3842325 intron ec + chrX 3842459 intron ec + chrX 3842593 intron ec + chrX_14_3840001 chrX_3840001 RAL-727 2401 chrX 3915525 3915553 chrX 3915606 3915640 10 86 2.5 4.0 3.2 2.4 115 chrX 3915525 intron CG42541 - chrX 3915582 intron CG42541 - chrX 3915640 intron CG42541 - chrX_10_3915001 chrX_3915001 RAL-727 2402 chrX 3986862 3986894 chrX 3994495 3994500 412 20 7631 7.5 0.0 3.8 4.2 7638 chrX 3986862 intergenic not near genes chrX 3990681 intergenic not near genes chrX 3994500 intergenic not near genes chrX_20_3990001 chrX_3990001 RAL-727 2403 chrX 4048501 4048521 chrX 4048577 4048597 10 76 3.0 2.5 2.8 2.6 96 chrX 4048501 3` UTR CR45482 - chrX 4048549 3` UTR CR45482 - chrX 4048597 3` UTR CR45482 - chrX_10_4045001 chrX_4045001 RAL-727 2404 chrX 4074889 4074903 chrX 4074967 4074982 4 79 2.5 3.0 2.8 1.1 93 chrX 4074889 intergenic not near genes chrX 4074936 intergenic not near genes chrX 4074982 intergenic not near genes chrX_4_4070001 chrX_4070001 RAL-727 2405 chrX 4101888 4101898 chrX 4101962 4101975 5 78 1.5 8.5 5.0 0.8 87 chrX 4101888 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101975 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-727 2406 chrX 4132665 4132699 chrX 4132833 4132867 9 167 4.0 3.5 3.8 1.9 202 chrX 4132665 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132867 intergenic Fas2 -,GlcAT-I + chrX_9_4130001 chrX_4130001 RAL-727 2407 chrX 4157894 4157925 chrX 4164928 4164960 297 10 7033 4.5 8.5 6.5 1.3 7066 chrX 4157894 intron Fas2 - chrX 4161427 intron Fas2 - chrX 4164960 intron Fas2 - chrX_10_4160001 chrX_4160001 RAL-727 2408 chrX 4324391 4324415 chrX 4324468 4324492 7 76 1.5 3.0 2.2 2.2 101 chrX 4324391 intron norpA + chrX 4324442 intron norpA + chrX 4324492 intron norpA + chrX_7_4320001 chrX_4320001 RAL-727 2409 chrX 4337919 4337956 chrX 4338042 4338079 22 121 3.5 0.5 2.0 7.3 160 chrX 4337919 intron norpA + chrX 4337999 intron norpA + chrX 4338079 intron norpA + chrX_22_4335001 chrX_4335001 RAL-727 2410 chrX 4396973 4397010 chrX 4397058 4397095 8 85 5.5 3.5 4.5 1.5 122 chrX 4396973 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397095 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-727 2411 chrX 4399475 4399502 chrX 4399561 4399571 10 85 2.0 5.0 3.5 2.2 96 chrX 4399475 intron CR32773 - chrX 4399523 intron CR32773 - chrX 4399571 intron CR32773 - chrX_10_4395001 chrX_4395001 RAL-727 2412 chrX 4401064 4401078 chrX 4401143 4401157 9 79 0.0 2.5 1.2 4.1 93 chrX 4401064 intron CR32773 - chrX 4401110 intron CR32773 - chrX 4401157 intron CR32773 - chrX_9_4400001 chrX_4400001 RAL-727 2413 chrX 4436457 4436484 chrX 4436533 4436539 11 73 5.5 2.0 3.8 2.3 82 chrX 4436457 intron,intron CR32773 -,bi + chrX 4436498 intron,intron CR32773 -,bi + chrX 4436539 intron,intron CR32773 -,bi + chrX_11_4435001 chrX_4435001 RAL-727 2414 chrX 4455438 4455460 chrX 4455519 4455542 11 82 3.0 5.0 4.0 2.2 104 chrX 4455438 intron,intron CR32773 -,bi + chrX 4455490 intron,intron CR32773 -,bi + chrX 4455542 intron,intron CR32773 -,bi + chrX_11_4455001 chrX_4455001 RAL-727 2415 chrX 4479867 4479889 chrX 4479967 4479989 7 99 2.5 7.0 4.8 1.2 122 chrX 4479867 intron,intron CR32773 -,bi + chrX 4479928 intron,intron CR32773 -,bi + chrX 4479989 intron,intron CR32773 -,bi + chrX_7_4475001 chrX_4475001 RAL-727 2416 chrX 4700391 4700426 chrX 4700734 4700769 jockey 9 342 2.5 4.0 3.2 2.1 378 chrX 4700391 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-727 2417 chrX 4731811 4731848 chrX 4736904 4736920 jockey 10 5088 6.0 3.0 4.5 1.8 5109 chrX 4731811 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736920 intergenic not near genes chrX_10_4730001 chrX_4730001 RAL-727 2418 chrX 4763256 4763285 chrX 4763744 4763773 Stalker4 9 485 5.5 5.0 5.2 1.5 517 chrX 4763256 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763773 intergenic not near genes chrX_9_4760001 chrX_4760001 RAL-727 2419 chrX 4792379 4792412 chrX 4792811 4792826 jockey 10 427 3.0 4.0 3.5 2.2 447 chrX 4792379 intergenic not near genes chrX 4792602 intergenic not near genes chrX 4792826 intergenic not near genes chrX_10_4790001 chrX_4790001 RAL-727 2420 chrX 4827211 4827239 chrX 4827298 4827326 8 87 4.0 2.5 3.2 1.9 115 chrX 4827211 intergenic CG12682 + chrX 4827268 intergenic CG12682 + chrX 4827326 intergenic CG12682 + chrX_8_4825001 chrX_4825001 RAL-727 2421 chrX 4827974 4828000 chrX 4835345 4835370 Stalker4 7 7369 3.0 1.5 2.2 2.2 7396 chrX 4827974 intergenic not near genes chrX 4831672 intergenic not near genes chrX 4835370 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-727 2422 chrX 4931350 4931381 chrX 4931444 4931463 8 91 26.0 24.0 25.0 0.3 113 chrX 4931350 intron CG44774 - chrX 4931406 intron CG44774 - chrX 4931463 intron CG44774 - chrX_8_4930001 chrX_4930001 RAL-727 2423 chrX 4990042 4990074 chrX 4997256 4997288 roo 17 7214 3.5 7.5 5.5 2.6 7246 chrX 4990042 intron CR44833 - chrX 4993665 intron CR44833 - chrX 4997288 intron CR44833 - chrX_17_4990001 chrX_4990001 RAL-727 2424 chrX 5055862 5055878 chrX 5055994 5056010 10 132 2.5 6.5 4.5 1.8 148 chrX 5055862 intron,intron CR44833 -,ovo + chrX 5055936 intron,intron CR44833 -,ovo + chrX 5056010 intron,intron CR44833 -,ovo + chrX_10_5055001 chrX_5055001 RAL-727 2425 chrX 5096277 5096305 chrX 5103842 5103870 springer 6 7561 1.5 2.5 2.0 2.0 7593 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-727 2426 chrX 5128683 5128691 chrX 5128839 5128847 6 156 42.5 40.5 41.5 0.1 164 chrX 5128683 intron,intron CG15465 +,rg + chrX 5128765 intron,intron CG15465 +,rg + chrX 5128847 intron,intron CG15465 +,rg + chrX_6_5125001 chrX_5125001 RAL-727 2427 chrX 5128678 5128704 chrX 5128849 5128859 4 159 39.5 36.0 37.8 0.1 181 chrX 5128678 intron,intron CG15465 +,rg + chrX 5128768 intron,intron CG15465 +,rg + chrX 5128859 intron,intron CG15465 +,rg + chrX_4_5125001 chrX_5125001 RAL-727 2428 chrX 5220391 5220423 chrX 5220632 5220655 10 237 0.0 3.5 1.8 3.6 264 chrX 5220391 intron,intron CG15465 +,rg + chrX 5220523 intron,intron CG15465 +,rg + chrX 5220655 intron,intron CG15465 +,rg + chrX_10_5220001 chrX_5220001 RAL-727 2429 chrX 5349274 5349308 chrX 5349351 5349385 10 77 2.5 5.0 3.8 2.1 111 chrX 5349274 intron SK + chrX 5349330 intron SK + chrX 5349385 intron SK + chrX_10_5345001 chrX_5345001 RAL-727 2430 chrX 5473587 5473612 chrX 5473663 5473688 13 75 6.0 4.5 5.2 2.1 101 chrX 5473587 intron SPR + chrX 5473638 intron SPR + chrX 5473688 intron SPR + chrX_13_5470001 chrX_5470001 RAL-727 2431 chrX 5515648 5515682 chrX 5515898 5515916 11 246 4.0 3.0 3.5 2.4 268 chrX 5515648 intergenic not near genes chrX 5515782 intergenic not near genes chrX 5515916 intergenic not near genes chrX_11_5515001 chrX_5515001 RAL-727 2432 chrX 5524851 5524872 chrX 5528711 5528735 412 12 3863 1.5 3.0 2.2 3.8 3884 chrX 5524851 intergenic snoRNA:Psi28S-3342 - chrX 5526793 intergenic not near genes chrX 5528735 intergenic Vsx2 - chrX_12_5525001 chrX_5525001 RAL-727 2433 chrX 5550975 5550981 chrX 5551116 5551122 4 141 6.0 1.0 3.5 0.9 147 chrX 5550975 intron Vsx2 - chrX 5551048 intron Vsx2 - chrX 5551122 intron Vsx2 - chrX_4_5550001 chrX_5550001 RAL-727 2434 chrX 5550983 5551008 chrX 5551114 5551149 4 138 4.0 1.0 2.5 1.1 166 chrX 5550983 intron Vsx2 - chrX 5551066 intron Vsx2 - chrX 5551149 intron Vsx2 - chrX_4_5550001 chrX_5550001 RAL-727 2435 chrX 5555374 5555394 chrX 5555496 5555518 6 120 3.5 3.0 3.2 1.4 144 chrX 5555374 intron Vsx2 - chrX 5555446 intron Vsx2 - chrX 5555518 intron Vsx2 - chrX_6_5555001 chrX_5555001 RAL-727 2436 chrX 5725030 5725059 chrX 5725133 5725162 10 101 4.0 2.5 3.2 2.4 132 chrX 5725030 intron CG32758 - chrX 5725096 intron CG32758 - chrX 5725162 intron CG32758 - chrX_10_5725001 chrX_5725001 RAL-727 2437 chrX 5798866 5798882 chrX 5799027 5799044 7 158 0.0 4.0 2.0 2.3 178 chrX 5798866 intergenic not near genes chrX 5798955 intergenic not near genes chrX 5799044 intergenic not near genes chrX_7_5795001 chrX_5795001 RAL-727 2438 chrX 5883809 5883841 chrX 5884050 5884082 pogo 14 240 3.5 7.5 5.5 2.2 273 chrX 5883809 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884082 intron CR45668 - chrX_14_5880001 chrX_5880001 RAL-727 2439 chrX 5884160 5884190 chrX 5884401 5884431 pogo 16 239 7.5 4.5 6.0 2.3 271 chrX 5884160 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884431 intron CR45668 - chrX_16_5880001 chrX_5880001 RAL-727 2440 chrX 5921835 5921862 chrX 5922154 5922163 10 316 8.0 4.5 6.2 1.4 328 chrX 5921835 intron CG3726 + chrX 5921999 intron CG3726 + chrX 5922163 intron CG3726 + chrX_10_5920001 chrX_5920001 RAL-727 2441 chrX 6009243 6009270 chrX 6009583 6009606 16 340 3.5 4.5 4.0 3.2 363 chrX 6009243 intron mab-21 - chrX 6009424 intron mab-21 - chrX 6009606 intron mab-21 - chrX_16_6005001 chrX_6005001 RAL-727 2442 chrX 6118697 6118730 chrX 6118779 6118812 21 81 5.5 3.5 4.5 3.8 115 chrX 6118697 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118812 intron Ca-alpha1T - chrX_21_6115001 chrX_6115001 RAL-727 2443 chrX 6168114 6168126 chrX 6168182 6168205 7 78 4.0 3.0 3.5 1.6 91 chrX 6168114 intron Ca-alpha1T - chrX 6168160 intron Ca-alpha1T - chrX 6168205 intron Ca-alpha1T - chrX_7_6165001 chrX_6165001 RAL-727 2444 chrX 6171587 6171615 chrX 6179014 6179048 Quasimodo 6 7432 2.5 3.5 3.0 1.5 7461 chrX 6171587 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179048 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-727 2445 chrX 6315180 6315210 chrX 6315258 6315269 13 77 2.0 4.0 3.0 3.2 89 chrX 6315180 intron CG15894 + chrX 6315224 intron CG15894 + chrX 6315269 intron CG15894 + chrX_13_6315001 chrX_6315001 RAL-727 2446 chrX 6335217 6335238 chrX 6337726 6337747 Tirant 7 2509 0.5 2.5 1.5 2.8 2530 chrX 6335217 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337747 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-727 2447 chrX 6388677 6388691 chrX 6388753 6388767 5 76 4.0 5.0 4.5 0.9 90 chrX 6388677 intergenic not near genes chrX 6388722 intergenic not near genes chrX 6388767 intergenic not near genes chrX_5_6385001 chrX_6385001 RAL-727 2448 chrX 6392877 6392900 chrX 6397642 6397652 Doc 12 4763 3.0 10.5 6.8 1.5 4775 chrX 6392877 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397652 intergenic not near genes chrX_12_6395001 chrX_6395001 RAL-727 2449 chrX 6514476 6514506 chrX 6514578 6514607 9 102 5.0 4.5 4.8 1.6 131 chrX 6514476 intron CG42340 - chrX 6514542 intron CG42340 - chrX 6514607 intron CG42340 - chrX_9_6510001 chrX_6510001 RAL-727 2450 chrX 6562821 6562851 chrX 6571303 6571332 Tirant 11 8479 3.5 3.0 3.2 2.6 8511 chrX 6562821 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571332 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-727 2451 chrX 6605480 6605487 chrX 6608502 6608509 Burdock 5 3022 5.0 8.0 6.5 0.7 3029 chrX 6605480 intron pigs + chrX 6606994 intron pigs + chrX 6608509 intron pigs + chrX_5_6605001 chrX_6605001 RAL-727 2452 chrX 6605489 6605507 chrX 6608498 6608529 Burdock 9 3021 0.5 5.5 3.0 2.2 3040 chrX 6605489 intron pigs + chrX 6607009 intron pigs + chrX 6608529 intron pigs + chrX_9_6605001 chrX_6605001 RAL-727 2453 chrX 6737517 6737550 chrX 6737599 6737615 17 78 3.5 4.5 4.0 3.4 98 chrX 6737517 intron CG3168 - chrX 6737566 intron CG3168 - chrX 6737615 intron CG3168 - chrX_17_6735001 chrX_6735001 RAL-727 2454 chrX 6859562 6859575 chrX 6859975 6859988 5 413 6.5 0.0 3.2 1.2 426 chrX 6859562 intron CG14434 - chrX 6859775 intron CG14434 - chrX 6859988 intron CG14434 - chrX_5_6855001 chrX_6855001 RAL-727 2455 chrX 6883157 6883172 chrX 6883232 6883253 10 78 6.0 4.0 5.0 1.7 96 chrX 6883157 intergenic not near genes chrX 6883205 intergenic not near genes chrX 6883253 intergenic not near genes chrX_10_6880001 chrX_6880001 RAL-727 2456 chrX 6897566 6897580 chrX 6897644 6897658 6 77 0.0 0.5 0.2 5.0 92 chrX 6897566 intergenic not near genes chrX 6897612 intergenic not near genes chrX 6897658 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-727 2457 chrX 6897689 6897706 chrX 6897799 6897816 4 110 1.0 4.0 2.5 1.1 127 chrX 6897689 intergenic not near genes chrX 6897752 intergenic not near genes chrX 6897816 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-727 2458 chrX 6984623 6984651 chrX 6984700 6984700 6 72 4.5 1.5 3.0 1.5 77 chrX 6984623 intron ogre - chrX 6984662 intron ogre - chrX 6984700 intron ogre - chrX_6_6980001 chrX_6980001 RAL-727 2459 chrX 6989509 6989533 chrX 6989596 6989620 12 87 4.0 8.0 6.0 1.7 111 chrX 6989509 intron ogre - chrX 6989564 intron ogre - chrX 6989620 intron ogre - chrX_12_6985001 chrX_6985001 RAL-727 2460 chrX 7023600 7023626 chrX 7030990 7031012 Tabor 10 7388 6.5 4.5 5.5 1.5 7412 chrX 7023600 intron CG12541 - chrX 7027306 intron CG12541 - chrX 7031012 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-727 2461 chrX 7125245 7125273 chrX 7134404 7134417 roo 5 9156 5.5 5.5 5.5 0.8 9172 chrX 7125245 intergenic not near genes chrX 7129831 intergenic not near genes chrX 7134417 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-727 2462 chrX 7156051 7156059 chrX 7156139 7156146 4 88 6.5 5.5 6.0 0.6 95 chrX 7156051 intron CG9650 + chrX 7156098 intron CG9650 + chrX 7156146 intron CG9650 + chrX_4_7155001 chrX_7155001 RAL-727 2463 chrX 7345201 7345212 chrX 7345291 7345304 6 91 6.5 1.0 3.8 1.2 103 chrX 7345201 intron,intron CR44357 -,CG1677 - chrX 7345252 intron,intron CR44357 -,CG1677 - chrX 7345304 intron,intron CR44357 -,CG1677 - chrX_6_7345001 chrX_7345001 RAL-727 2464 chrX 7393710 7393736 chrX 7393801 7393827 10 90 1.0 5.5 3.2 2.4 117 chrX 7393710 intron,intron CR44357 -,CG1677 - chrX 7393768 intron,intron CR44357 -,CG1677 - chrX 7393827 intron,intron CR44357 -,CG1677 - chrX_10_7390001 chrX_7390001 RAL-727 2465 chrX 7552247 7552279 chrX 7552324 7552356 10 76 4.5 0.5 2.5 2.9 109 chrX 7552247 intergenic not near genes chrX 7552302 intergenic not near genes chrX 7552356 intergenic not near genes chrX_10_7550001 chrX_7550001 RAL-727 2466 chrX 7702522 7702526 chrX 7702605 7702609 5 83 8.5 16.0 12.2 0.4 87 chrX 7702522 intron CHES-1-like - chrX 7702566 intron CHES-1-like - chrX 7702609 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-727 2467 chrX 7702896 7702937 chrX 7703335 7703359 jockey 31 437 11.0 4.0 7.5 3.6 463 chrX 7702896 intron CHES-1-like - chrX 7703128 intron CHES-1-like - chrX 7703359 intron CHES-1-like - chrX_31_7700001 chrX_7700001 RAL-727 2468 chrX 7737160 7737181 chrX 7737242 7737263 9 82 2.5 3.5 3.0 2.2 103 chrX 7737160 5` UTR Tom40 + chrX 7737212 intron Tom40 + chrX 7737263 intron Tom40 + chrX_9_7735001 chrX_7735001 RAL-727 2469 chrX 7784237 7784241 chrX 7784539 7784543 jockey 5 302 11.0 5.5 8.2 0.5 306 chrX 7784237 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784543 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-727 2470 chrX 7832434 7832463 chrX 7832523 7832552 9 89 2.5 2.5 2.5 2.6 118 chrX 7832434 intron CG1402 + chrX 7832493 intron CG1402 + chrX 7832552 intron CG1402 + chrX_9_7830001 chrX_7830001 RAL-727 2471 chrX 7941596 7941627 chrX 7941682 7941713 9 84 3.5 6.0 4.8 1.6 117 chrX 7941596 intron,3` UTR CG42593 +,l(1)G0193 - chrX 7941654 intron,3` UTR CG42593 +,l(1)G0193 - chrX 7941713 intron,exon CG42593 +,l(1)G0193 - chrX_9_7940001 chrX_7940001 RAL-727 2472 chrX 8031430 8031457 chrX 8035739 8035766 Juan 12 4309 4.5 4.5 4.5 2.2 4336 chrX 8031430 intergenic not near genes chrX 8033598 intergenic not near genes chrX 8035766 3` UTR CG2233 - chrX_12_8030001 chrX_8030001 RAL-727 2473 chrX 8085572 8085603 chrX 8085658 8085689 12 85 1.5 4.0 2.8 3.2 117 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085689 intron,5` UTR CG2256 -,CR45535 + chrX_12_8085001 chrX_8085001 RAL-727 2474 chrX 8500928 8500959 chrX 8501092 8501123 11 164 1.0 0.0 0.5 7.3 195 chrX 8500928 intron CG33181 + chrX 8501026 intron CG33181 + chrX 8501123 intron CG33181 + chrX_11_8500001 chrX_8500001 RAL-727 2475 chrX 8506027 8506063 chrX 8506105 8506141 11 78 2.5 5.0 3.8 2.3 114 chrX 8506027 intron CG33181 + chrX 8506084 intron CG33181 + chrX 8506141 intron CG33181 + chrX_11_8505001 chrX_8505001 RAL-727 2476 chrX 8506531 8506560 chrX 8506739 8506767 13 205 2.5 2.5 2.5 3.7 236 chrX 8506531 intron CG33181 + chrX 8506649 intron CG33181 + chrX 8506767 intron CG33181 + chrX_13_8505001 chrX_8505001 RAL-727 2477 chrX 8509119 8509150 chrX 8509196 8509226 7 75 0.0 4.0 2.0 2.3 107 chrX 8509119 intron CG33181 + chrX 8509172 intron CG33181 + chrX 8509226 intron CG33181 + chrX_7_8505001 chrX_8505001 RAL-727 2478 chrX 8606531 8606534 chrX 8606606 8606610 4 76 5.0 8.5 6.8 0.5 79 chrX 8606531 intergenic Caf1-180 - chrX 8606570 intergenic Caf1-180 - chrX 8606610 intergenic Caf1-180 - chrX_4_8605001 chrX_8605001 RAL-727 2479 chrX 8692905 8692928 chrX 8693116 8693139 6 211 2.5 2.0 2.2 1.9 234 chrX 8692905 intron CG11294 - chrX 8693022 intron CG11294 - chrX 8693139 intron CG11294 - chrX_6_8690001 chrX_8690001 RAL-727 2480 chrX 8727412 8727424 chrX 8727489 8727501 4 77 0.0 3.0 1.5 1.6 89 chrX 8727412 intergenic not near genes chrX 8727456 intergenic not near genes chrX 8727501 intergenic not near genes chrX_4_8725001 chrX_8725001 RAL-727 2481 chrX 8730448 8730467 chrX 8730524 8730543 4 75 0.0 8.0 4.0 0.8 95 chrX 8730448 intergenic not near genes chrX 8730496 intergenic not near genes chrX 8730543 intergenic not near genes chrX_4_8730001 chrX_8730001 RAL-727 2482 chrX 8875843 8875877 chrX 8875923 8875960 16 81 5.0 1.0 3.0 4.0 117 chrX 8875843 exon Moe - chrX 8875902 intron Moe - chrX 8875960 intron Moe - chrX_16_8875001 chrX_8875001 RAL-727 2483 chrX 8894097 8894123 chrX 8894198 8894224 7 100 6.5 2.5 4.5 1.3 127 chrX 8894097 intron Moe - chrX 8894160 intron Moe - chrX 8894224 intron Moe - chrX_7_8890001 chrX_8890001 RAL-727 2484 chrX 8922337 8922357 chrX 8922762 8922791 jockey 10 426 6.0 3.5 4.8 1.7 454 chrX 8922337 intron rdgA + chrX 8922564 intron rdgA + chrX 8922791 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-727 2485 chrX 8927581 8927610 chrX 8929850 8929880 NOF 12 2268 9.0 4.0 6.5 1.6 2299 chrX 8927581 intron rdgA + chrX 8928730 intron rdgA + chrX 8929880 intron rdgA + chrX_12_8925001 chrX_8925001 RAL-727 2486 chrX 8948759 8948792 chrX 8956269 8956302 roo 10 7509 1.0 3.0 2.0 3.3 7543 chrX 8948759 intron rdgA + chrX 8952530 intron rdgA + chrX 8956302 intron rdgA + chrX_10_8950001 chrX_8950001 RAL-727 2487 chrX 9036544 9036570 chrX 9036620 9036646 11 76 2.0 3.0 2.5 3.1 102 chrX 9036544 intron,intron CR43836 -,CG42388 + chrX 9036595 intron,intron CR43836 -,CG42388 + chrX 9036646 intron,intron CR43836 -,CG42388 + chrX_11_9035001 chrX_9035001 RAL-727 2488 chrX 9273018 9273043 chrX 9273099 9273124 10 81 4.0 2.0 3.0 2.5 106 chrX 9273018 intergenic Cfp1 -,CG16892 + chrX 9273071 intergenic Cfp1 -,CG16892 + chrX 9273124 intergenic Cfp1 -,CG16892 + chrX_10_9270001 chrX_9270001 RAL-727 2489 chrX 9337940 9337966 chrX 9338032 9338058 10 89 2.5 3.0 2.8 2.6 118 chrX 9337940 intron CG34449 - chrX 9337999 intron CG34449 - chrX 9338058 exon CG34449 - chrX_10_9335001 chrX_9335001 RAL-727 2490 chrX 9391573 9391598 chrX 9391719 9391744 14 146 5.0 3.5 4.2 2.7 171 chrX 9391573 intron mgl - chrX 9391658 intron mgl - chrX 9391744 intron mgl - chrX_14_9390001 chrX_9390001 RAL-727 2491 chrX 9393940 9393971 chrX 9394196 9394227 9 255 2.0 3.0 2.5 2.6 287 chrX 9393940 intron mgl - chrX 9394084 intron mgl - chrX 9394227 intron mgl - chrX_9_9390001 chrX_9390001 RAL-727 2492 chrX 9508135 9508168 chrX 9509653 9509685 jockey 8 1518 2.0 3.5 2.8 2.1 1550 chrX 9508135 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509685 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-727 2493 chrX 9575791 9575824 chrX 9576113 9576143 mdg3 15 319 5.0 5.5 5.2 2.4 352 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575967 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_15_9575001 chrX_9575001 RAL-727 2494 chrX 9640070 9640108 chrX 9640156 9640156 14 80 8.0 5.5 6.8 1.8 86 chrX 9640070 intron l(1)G0232 - chrX 9640113 intron l(1)G0232 - chrX 9640156 intron l(1)G0232 - chrX_14_9640001 chrX_9640001 RAL-727 2495 chrX 9758047 9758082 chrX 9758132 9758168 6 85 2.0 0.0 1.0 3.0 121 chrX 9758047 intergenic not near genes chrX 9758108 intergenic not near genes chrX 9758168 intergenic not near genes chrX_6_9755001 chrX_9755001 RAL-727 2496 chrX 9816571 9816605 chrX 9816652 9816686 7 81 2.0 6.0 4.0 1.4 115 chrX 9816571 intron CG32698 + chrX 9816628 intron CG32698 + chrX 9816686 intron CG32698 + chrX_7_9815001 chrX_9815001 RAL-727 2497 chrX 9837807 9837812 chrX 9839736 9839768 9 1933 16.5 13.5 15.0 0.6 1961 chrX 9837807 intron CG32698 + chrX 9838788 intron CG32698 + chrX 9839768 intron CG32698 + chrX_9_9835001 chrX_9835001 RAL-727 2498 chrX 10138218 10138248 chrX 10145722 10145747 412 15 7502 6.5 5.0 5.8 2.2 7529 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145747 intron,intron RhoU +,CR44894 - chrX_15_10140001 chrX_10140001 RAL-727 2499 chrX 10154293 10154310 chrX 10154363 10154386 5 75 2.0 7.0 4.5 0.9 93 chrX 10154293 intron,intron CR44894 -,CG12645 + chrX 10154340 intron,intron CR44894 -,CG12645 + chrX 10154386 intron,exon CR44894 -,CG12645 + chrX_5_10150001 chrX_10150001 RAL-727 2500 chrX 10206517 10206531 chrX 10206597 10206597 5 77 4.5 3.5 4.0 1.0 80 chrX 10206517 intron,3` UTR CR44894 -,CG15309 - chrX 10206557 intron,3` UTR CR44894 -,CG15309 - chrX 10206597 intron,3` UTR CR44894 -,CG15309 - chrX_5_10205001 chrX_10205001 RAL-727 2501 chrX 10267305 10267328 chrX 10276455 10276478 roo 4 9150 0.5 3.5 2.0 1.3 9173 chrX 10267305 3` UTR alpha-Man-I - chrX 10271892 intron alpha-Man-I - chrX 10276478 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-727 2502 chrX 10285898 10285906 chrX 10286234 10286242 4 335 2.5 3.5 3.0 1.0 344 chrX 10285898 intron alpha-Man-I - chrX 10286070 intron alpha-Man-I - chrX 10286242 intron alpha-Man-I - chrX_4_10285001 chrX_10285001 RAL-727 2503 chrX 10306067 10306081 chrX 10306147 10306162 7 80 5.0 0.0 2.5 2.0 95 chrX 10306067 intron alpha-Man-I - chrX 10306114 intron alpha-Man-I - chrX 10306162 intron alpha-Man-I - chrX_7_10305001 chrX_10305001 RAL-727 2504 chrX 10348801 10348828 chrX 10356365 10356387 springer 6 7562 4.0 3.5 3.8 1.2 7586 chrX 10348801 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356387 intergenic l(1)G0289 - chrX_6_10350001 chrX_10350001 RAL-727 2505 chrX 10404151 10404178 chrX 10404481 10404502 13 327 6.5 3.0 4.8 2.2 351 chrX 10404151 intron flw + chrX 10404326 intron flw + chrX 10404502 intron flw + chrX_13_10400001 chrX_10400001 RAL-727 2506 chrX 10550859 10550889 chrX 10552326 10552344 hobo 9 1464 4.0 1.5 2.8 2.4 1485 chrX 10550859 intron spri - chrX 10551602 intron spri - chrX 10552344 intron spri - chrX_9_10550001 chrX_10550001 RAL-727 2507 chrX 10686054 10686083 chrX 10691191 10691220 roo 10 5137 6.0 3.5 4.8 1.7 5166 chrX 10686054 intron X11Lbeta + chrX 10688637 intron X11Lbeta + chrX 10691220 intron X11Lbeta + chrX_10_10685001 chrX_10685001 RAL-727 2508 chrX 10754170 10754196 chrX 10758298 10758324 10 4128 30.5 24.5 27.5 0.4 4154 chrX 10754170 intron Rph - chrX 10756247 intron Rph - chrX 10758324 intergenic not near genes chrX_10_10755001 chrX_10755001 RAL-727 2509 chrX 10772683 10772690 chrX 10772765 10772773 Tirant 4 82 4.0 4.0 4.0 0.8 90 chrX 10772683 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772773 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-727 2510 chrX 10803034 10803049 chrX 10803119 10803134 17 84 15.5 7.0 11.2 1.4 100 chrX 10803034 intron Imp - chrX 10803084 intron Imp - chrX 10803134 intron Imp - chrX_17_10800001 chrX_10800001 RAL-727 2511 chrX 11051457 11051491 chrX 11051538 11051572 10 79 2.0 1.5 1.8 3.6 115 chrX 11051457 intergenic not near genes chrX 11051514 intergenic not near genes chrX 11051572 intergenic not near genes chrX_10_11050001 chrX_11050001 RAL-727 2512 chrX 11095998 11096030 chrX 11103100 11103132 HMS-Beagle 6 7101 3.5 2.5 3.0 1.5 7134 chrX 11095998 intergenic not near genes chrX 11099565 intergenic not near genes chrX 11103132 intron CG42249 + chrX_6_11095001 chrX_11095001 RAL-727 2513 chrX 11214988 11215013 chrX 11215350 11215376 8 361 6.5 3.0 4.8 1.4 388 chrX 11214988 intergenic not near genes chrX 11215182 intergenic not near genes chrX 11215376 intergenic not near genes chrX_8_11215001 chrX_11215001 RAL-727 2514 chrX 11291702 11291718 chrX 11291782 11291800 6 81 4.5 5.5 5.0 1.0 98 chrX 11291702 intron CG44422 - chrX 11291751 intron CG44422 - chrX 11291800 intron CG44422 - chrX_6_11290001 chrX_11290001 RAL-727 2515 chrX 11312056 11312094 chrX 11319409 11319427 Stalker2 8 7343 1.5 2.5 2.0 2.7 7371 chrX 11312056 intergenic not near genes chrX 11315742 intergenic not near genes chrX 11319427 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-727 2516 chrX 11379766 11379792 chrX 11379911 11379937 7 145 4.0 5.5 4.8 1.2 171 chrX 11379766 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379937 intron dlg1 + chrX_7_11375001 chrX_11375001 RAL-727 2517 chrX 11571461 11571484 chrX 11571698 11571721 pogo 12 237 4.5 8.0 6.2 1.7 260 chrX 11571461 3` UTR Kmn1 - chrX 11571591 3` UTR Kmn1 - chrX 11571721 3` UTR Kmn1 - chrX_12_11570001 chrX_11570001 RAL-727 2518 chrX 11633416 11633428 chrX 11640470 11640482 297 5 7054 9.0 2.5 5.8 0.7 7066 chrX 11633416 intron Ptp10D + chrX 11636949 intron Ptp10D + chrX 11640482 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-727 2519 chrX 11633431 11633449 chrX 11640469 11640503 297 8 7052 4.0 2.5 3.2 1.9 7072 chrX 11633431 intron Ptp10D + chrX 11636967 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-727 2520 chrX 11657905 11657931 chrX 11657997 11658023 9 92 0.0 5.0 2.5 2.6 118 chrX 11657905 intron Ptp10D + chrX 11657964 intron Ptp10D + chrX 11658023 intron Ptp10D + chrX_9_11655001 chrX_11655001 RAL-727 2521 chrX 11764801 11764814 chrX 11765071 11765085 6 271 4.0 8.0 6.0 0.9 284 chrX 11764801 intron m + chrX 11764943 intron m + chrX 11765085 intron m + chrX_6_11760001 chrX_11760001 RAL-727 2522 chrX 11799018 11799036 chrX 11799104 11799122 7 86 3.5 4.5 4.0 1.4 104 chrX 11799018 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799122 intron CkIIbeta + chrX_7_11795001 chrX_11795001 RAL-727 2523 chrX 11804673 11804689 chrX 11804777 11804793 6 104 3.0 5.5 4.2 1.2 120 chrX 11804673 intron Hsc70-3 - chrX 11804733 intron Hsc70-3 - chrX 11804793 intron Hsc70-3 - chrX_6_11800001 chrX_11800001 RAL-727 2524 chrX 11922365 11922380 chrX 11922498 11922513 11 133 4.5 8.5 6.5 1.5 148 chrX 11922365 exon Sclp - chrX 11922439 intron Sclp - chrX 11922513 intron Sclp - chrX_11_11920001 chrX_11920001 RAL-727 2525 chrX 11936573 11936590 chrX 11936672 11936689 5 99 0.0 5.0 2.5 1.4 116 chrX 11936573 intron cac - chrX 11936631 intron cac - chrX 11936689 intron cac - chrX_5_11935001 chrX_11935001 RAL-727 2526 chrX 12138660 12138676 chrX 12139304 12139320 6 642 4.0 5.5 4.8 1.0 660 chrX 12138660 intron Ten-a + chrX 12138990 intron Ten-a + chrX 12139320 intron Ten-a + chrX_6_12135001 chrX_12135001 RAL-727 2527 chrX 12168133 12168157 chrX 12173575 12173598 I-element 4 5440 3.5 2.0 2.8 1.1 5465 chrX 12168133 intron Ten-a + chrX 12170866 intron Ten-a + chrX 12173598 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-727 2528 chrX 12176742 12176745 chrX 12176815 12176820 4 74 7.5 8.0 7.8 0.5 78 chrX 12176742 intron,3` UTR Ten-a +,CG1924 - chrX 12176781 intron,3` UTR Ten-a +,CG1924 - chrX 12176820 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-727 2529 chrX 12176747 12176769 chrX 12176813 12176845 19 73 6.5 6.0 6.2 2.6 98 chrX 12176747 intron,3` UTR Ten-a +,CG1924 - chrX 12176796 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_19_12175001 chrX_12175001 RAL-727 2530 chrX 12202776 12202793 chrX 12202859 12202876 6 83 1.5 2.5 2.0 2.0 100 chrX 12202776 intron Ten-a + chrX 12202826 intron Ten-a + chrX 12202876 intron Ten-a + chrX_6_12200001 chrX_12200001 RAL-727 2531 chrX 12248744 12248768 chrX 12248836 12248860 11 91 6.0 5.0 5.5 1.7 116 chrX 12248744 intron Ten-a + chrX 12248802 intron Ten-a + chrX 12248860 intron Ten-a + chrX_11_12245001 chrX_12245001 RAL-727 2532 chrX 12350782 12350803 chrX 12350856 12350861 8 72 2.0 0.5 1.2 3.6 79 chrX 12350782 intergenic not near genes chrX 12350822 intergenic not near genes chrX 12350861 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-727 2533 chrX 12356856 12356881 chrX 12356968 12356993 7 111 1.0 7.0 4.0 1.4 137 chrX 12356856 intergenic not near genes chrX 12356924 intergenic not near genes chrX 12356993 intergenic not near genes chrX_7_12355001 chrX_12355001 RAL-727 2534 chrX 12759234 12759254 chrX 12759321 12759341 8 87 5.0 6.0 5.5 1.2 107 chrX 12759234 intron ade5 - chrX 12759288 intron ade5 - chrX 12759341 intron ade5 - chrX_8_12755001 chrX_12755001 RAL-727 2535 chrX 12823193 12823228 chrX 12823270 12823300 12 76 5.0 4.0 4.5 2.2 107 chrX 12823193 intron Pde9 - chrX 12823246 intron Pde9 - chrX 12823300 intron Pde9 - chrX_12_12820001 chrX_12820001 RAL-727 2536 chrX 12930597 12930608 chrX 12937713 12937717 HMS-Beagle 6 7115 5.5 10.5 8.0 0.7 7120 chrX 12930597 intron fne + chrX 12934157 intron fne + chrX 12937717 intron fne + chrX_6_12930001 chrX_12930001 RAL-727 2537 chrX 12953892 12953915 chrX 12954030 12954053 5 138 0.0 3.0 1.5 2.0 161 chrX 12953892 intron hec - chrX 12953972 intron hec - chrX 12954053 intron hec - chrX_5_12950001 chrX_12950001 RAL-727 2538 chrX 13052644 13052657 chrX 13053668 13053694 4 1033 2.0 19.5 10.8 0.3 1050 chrX 13052644 intron rad + chrX 13053169 intron,3` UTR rad +,CG12715 - chrX 13053694 intron,exon rad +,CG12715 - chrX_4_13050001 chrX_13050001 RAL-727 2539 chrX 13061357 13061371 chrX 13061467 13061482 5 110 3.0 0.5 1.8 1.8 125 chrX 13061357 intron rad + chrX 13061420 intron rad + chrX 13061482 intron rad + chrX_5_13060001 chrX_13060001 RAL-727 2540 chrX 13146598 13146630 chrX 13146685 13146718 13 88 4.0 2.5 3.2 3.1 120 chrX 13146598 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146718 intron CG32645 + chrX_13_13145001 chrX_13145001 RAL-727 2541 chrX 13161695 13161725 chrX 13161772 13161802 10 77 5.0 3.5 4.2 1.9 107 chrX 13161695 3` UTR CG12096 + chrX 13161748 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161802 3` UTR,3` UTR CG12096 +,CG34411 - chrX_10_13160001 chrX_13160001 RAL-727 2542 chrX 13172352 13172377 chrX 13172428 13172453 15 74 1.0 5.5 3.2 3.6 101 chrX 13172352 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172453 intron CG34411 - chrX_15_13170001 chrX_13170001 RAL-727 2543 chrX 13232986 13233017 chrX 13233070 13233072 15 82 2.5 4.0 3.2 3.6 86 chrX 13232986 intron mew - chrX 13233029 intron mew - chrX 13233072 intron mew - chrX_15_13230001 chrX_13230001 RAL-727 2544 chrX 13236887 13236899 chrX 13236972 13236984 8 85 0.0 3.0 1.5 3.2 97 chrX 13236887 intron mew - chrX 13236936 intron mew - chrX 13236984 intron mew - chrX_8_13235001 chrX_13235001 RAL-727 2545 chrX 13374839 13374867 chrX 13374917 13374947 4 80 1.5 3.0 2.2 1.2 108 chrX 13374839 intron CG1640 + chrX 13374893 intron CG1640 + chrX 13374947 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-727 2546 chrX 13429469 13429496 chrX 13430617 13430625 jockey 11 1147 0.0 7.5 3.8 2.3 1156 chrX 13429469 intergenic not near genes chrX 13430047 intergenic not near genes chrX 13430625 intergenic not near genes chrX_11_13430001 chrX_13430001 RAL-727 2547 chrX 13442139 13442170 chrX 13442230 13442234 14 88 2.5 5.0 3.8 2.9 95 chrX 13442139 intergenic not near genes chrX 13442186 intergenic not near genes chrX 13442234 intergenic not near genes chrX_14_13440001 chrX_13440001 RAL-727 2548 chrX 13463666 13463675 chrX 13469220 13469252 mdg3 6 5570 5.5 2.0 3.8 1.2 5586 chrX 13463666 intron Neto + chrX 13466459 intron Neto + chrX 13469252 intron Neto + chrX_6_13465001 chrX_13465001 RAL-727 2549 chrX 13560561 13560593 chrX 13560641 13560674 12 78 4.5 3.5 4.0 2.4 113 chrX 13560561 intergenic not near genes chrX 13560618 intergenic not near genes chrX 13560674 intergenic not near genes chrX_12_13560001 chrX_13560001 RAL-727 2550 chrX 13569709 13569744 chrX 13569833 13569868 17 123 6.5 4.0 5.2 2.7 159 chrX 13569709 intron Tango13 + chrX 13569788 intron Tango13 + chrX 13569868 intron Tango13 + chrX_17_13565001 chrX_13565001 RAL-727 2551 chrX 13628438 13628470 chrX 13628522 13628554 8 84 1.0 1.5 1.2 3.6 116 chrX 13628438 intron NFAT + chrX 13628496 intron NFAT + chrX 13628554 intron NFAT + chrX_8_13625001 chrX_13625001 RAL-727 2552 chrX 13875960 13875989 chrX 13876044 13876073 11 84 0.5 1.0 0.8 6.1 113 chrX 13875960 intron mamo - chrX 13876016 intron mamo - chrX 13876073 intron mamo - chrX_11_13875001 chrX_13875001 RAL-727 2553 chrX 13934292 13934313 chrX 13934375 13934396 5 83 4.5 3.0 3.8 1.0 104 chrX 13934292 intron mamo - chrX 13934344 intron mamo - chrX 13934396 intron mamo - chrX_5_13930001 chrX_13930001 RAL-727 2554 chrX 13943271 13943300 chrX 13943362 13943381 11 88 0.0 2.5 1.2 5.0 110 chrX 13943271 intron mamo - chrX 13943326 intron mamo - chrX 13943381 intron mamo - chrX_11_13940001 chrX_13940001 RAL-727 2555 chrX 13975895 13975906 chrX 13975954 13975983 4 66 0.0 2.0 1.0 2.0 88 chrX 13975895 intron mamo - chrX 13975939 intron mamo - chrX 13975983 intron mamo - chrX_4_13975001 chrX_13975001 RAL-727 2556 chrX 14023131 14023147 chrX 14023224 14023229 9 92 2.0 6.0 4.0 1.8 98 chrX 14023131 intergenic not near genes chrX 14023180 intergenic not near genes chrX 14023229 intergenic not near genes chrX_9_14020001 chrX_14020001 RAL-727 2557 chrX 14064148 14064167 chrX 14064245 14064264 6 97 0.0 1.0 0.5 4.0 116 chrX 14064148 intergenic not near genes chrX 14064206 intergenic not near genes chrX 14064264 intergenic not near genes chrX_6_14060001 chrX_14060001 RAL-727 2558 chrX 14105028 14105048 chrX 14114174 14114198 roo 6 9149 6.5 5.5 6.0 0.9 9170 chrX 14105028 intergenic not near genes chrX 14109613 intergenic not near genes chrX 14114198 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-727 2559 chrX 14122618 14122650 chrX 14122694 14122726 4 76 0.0 6.0 3.0 1.0 108 chrX 14122618 intergenic not near genes chrX 14122672 intergenic not near genes chrX 14122726 intergenic not near genes chrX_4_14120001 chrX_14120001 RAL-727 2560 chrX 14157592 14157621 chrX 14163249 14163277 297 13 5656 3.5 2.5 3.0 3.2 5685 chrX 14157592 intergenic not near genes chrX 14160434 intergenic not near genes chrX 14163277 intergenic not near genes chrX_13_14160001 chrX_14160001 RAL-727 2561 chrX 14209463 14209490 chrX 14209554 14209581 9 91 5.0 5.0 5.0 1.5 118 chrX 14209463 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209581 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-727 2562 chrX 14405013 14405026 chrX 14405091 14405104 4 78 4.5 4.0 4.2 0.8 91 chrX 14405013 intron dpr8 + chrX 14405058 intron dpr8 + chrX 14405104 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-727 2563 chrX 14416307 14416340 chrX 14421074 14421107 F-element 10 4767 1.5 4.5 3.0 2.5 4800 chrX 14416307 intron dpr8 + chrX 14418707 intron dpr8 + chrX 14421107 intron dpr8 + chrX_10_14415001 chrX_14415001 RAL-727 2564 chrX 14484971 14484986 chrX 14485060 14485074 6 89 0.0 2.5 1.2 2.7 103 chrX 14484971 intergenic not near genes chrX 14485022 intergenic not near genes chrX 14485074 intergenic not near genes chrX_6_14485001 chrX_14485001 RAL-727 2565 chrX 14561623 14561656 chrX 14561708 14561740 10 84 3.0 6.5 4.8 1.7 117 chrX 14561623 intergenic not near genes chrX 14561682 intergenic not near genes chrX 14561740 intergenic not near genes chrX_10_14560001 chrX_14560001 RAL-727 2566 chrX 14589685 14589692 chrX 14589922 14589928 pogo 4 237 7.0 4.5 5.8 0.6 243 chrX 14589685 intron CG9413 - chrX 14589806 intron CG9413 - chrX 14589928 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-727 2567 chrX 14589693 14589708 chrX 14589919 14589945 pogo 10 234 2.5 3.5 3.0 2.5 252 chrX 14589693 intron CG9413 - chrX 14589819 intron CG9413 - chrX 14589945 intron CG9413 - chrX_10_14585001 chrX_14585001 RAL-727 2568 chrX 14636460 14636479 chrX 14641901 14641907 I-element 4 5438 9.5 7.0 8.2 0.4 5447 chrX 14636460 intron NetA - chrX 14639184 intron NetA - chrX 14641907 intron NetA - chrX_4_14635001 chrX_14635001 RAL-727 2569 chrX 14684721 14684728 chrX 14684805 14684812 4 84 4.5 0.0 2.2 1.2 91 chrX 14684721 intergenic not near genes chrX 14684766 intergenic not near genes chrX 14684812 intergenic not near genes chrX_4_14680001 chrX_14680001 RAL-727 2570 chrX 14767944 14767976 chrX 14768024 14768056 8 80 1.5 0.0 0.8 4.4 112 chrX 14767944 intergenic not near genes chrX 14768000 intergenic not near genes chrX 14768056 intergenic not near genes chrX_8_14765001 chrX_14765001 RAL-727 2571 chrX 14778027 14778058 chrX 14782824 14782855 Doc 7 4797 3.5 6.0 4.8 1.2 4828 chrX 14778027 intergenic CG5347 + chrX 14780441 intergenic not near genes chrX 14782855 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-727 2572 chrX 14818763 14818794 chrX 14823967 14823980 copia 7 5199 1.5 4.5 3.0 1.8 5217 chrX 14818763 intron rut - chrX 14821372 intron rut - chrX 14823980 intron rut - chrX_7_14820001 chrX_14820001 RAL-727 2573 chrX 14900081 14900085 chrX 14900168 14900171 6 87 2.5 0.0 1.2 2.7 90 chrX 14900081 intron Flo2 + chrX 14900126 intron Flo2 + chrX 14900171 intron Flo2 + chrX_6_14900001 chrX_14900001 RAL-727 2574 chrX 14936858 14936890 chrX 14946115 14946147 roo 16 9257 5.0 4.5 4.8 2.8 9289 chrX 14936858 intron pdgy - chrX 14941502 intron pdgy - chrX 14946147 intron pdgy - chrX_16_14940001 chrX_14940001 RAL-727 2575 chrX 14968088 14968101 chrX 14968167 14968180 4 79 2.5 8.0 5.2 0.6 92 chrX 14968088 intron eag + chrX 14968134 intron eag + chrX 14968180 intron eag + chrX_4_14965001 chrX_14965001 RAL-727 2576 chrX 15019096 15019098 chrX 15302414 15302430 4 283331 19.0 5.0 12.0 0.3 283334 chrX 15019096 intron hiw - chrX 15160763 intron CG9095 - chrX 15302430 intron gce + chrX_4_15160001 chrX_15160001 RAL-727 2577 chrX 15240550 15240576 chrX 15240692 15240718 13 140 5.5 3.0 4.2 2.5 168 chrX 15240550 intergenic not near genes chrX 15240634 intergenic not near genes chrX 15240718 intergenic not near genes chrX_13_15240001 chrX_15240001 RAL-727 2578 chrX 15273712 15273734 chrX 15274879 15274901 1360 5 1165 2.5 2.5 2.5 1.4 1189 chrX 15273712 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274901 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-727 2579 chrX 15277637 15277667 chrX 15277722 15277752 8 84 2.0 1.0 1.5 3.2 115 chrX 15277637 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277752 intergenic not near genes chrX_8_15275001 chrX_15275001 RAL-727 2580 chrX 15369846 15369859 chrX 15369929 15369942 14 82 2.0 6.0 4.0 2.8 96 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369942 intron acj6 - chrX_14_15365001 chrX_15365001 RAL-727 2581 chrX 15413048 15413079 chrX 15417350 15417359 Juan 16 4298 7.0 5.0 6.0 2.3 4311 chrX 15413048 intron Cngl - chrX 15415204 intron Cngl - chrX 15417359 intron Cngl - chrX_16_15415001 chrX_15415001 RAL-727 2582 chrX 15435687 15435703 chrX 15436120 15436136 rover 9 433 0.0 12.0 6.0 1.3 449 chrX 15435687 intron Cngl - chrX 15435912 intron Cngl - chrX 15436136 intron Cngl - chrX_9_15435001 chrX_15435001 RAL-727 2583 chrX 15455550 15455574 chrX 15455627 15455631 10 74 2.0 2.5 2.2 3.1 81 chrX 15455550 3` UTR,3` UTR CG11655 +,shtd - chrX 15455590 3` UTR shtd - chrX 15455631 3` UTR shtd - chrX_10_15455001 chrX_15455001 RAL-727 2584 chrX 15529271 15529298 chrX 15529352 15529379 5 81 2.0 1.5 1.8 1.8 108 chrX 15529271 intron Ac13E - chrX 15529325 intron Ac13E - chrX 15529379 intron Ac13E - chrX_5_15525001 chrX_15525001 RAL-727 2585 chrX 15536695 15536706 chrX 15536777 15536783 4 81 12.0 15.5 13.8 0.3 88 chrX 15536695 intron Ac13E - chrX 15536739 intron Ac13E - chrX 15536783 intron Ac13E - chrX_4_15535001 chrX_15535001 RAL-727 2586 chrX 15589434 15589445 chrX 15589613 15589623 5 179 8.0 8.5 8.2 0.5 189 chrX 15589434 intron CG9220 - chrX 15589528 intron CG9220 - chrX 15589623 intron CG9220 - chrX_5_15585001 chrX_15585001 RAL-727 2587 chrX 15591184 15591211 chrX 15591248 15591251 8 68 0.0 1.0 0.5 5.3 67 chrX 15591184 intron CG9220 - chrX 15591218 intron CG9220 - chrX 15591251 intron CG9220 - chrX_8_15590001 chrX_15590001 RAL-727 2588 chrX 15645449 15645480 chrX 15645534 15645563 19 82 4.0 0.0 2.0 6.3 114 chrX 15645449 intergenic CG8117 + chrX 15645506 intergenic not near genes chrX 15645563 intergenic not near genes chrX_19_15645001 chrX_15645001 RAL-727 2589 chrX 15678049 15678068 chrX 15678120 15678145 5 75 3.0 6.5 4.8 0.9 96 chrX 15678049 intergenic CG12708 + chrX 15678097 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-727 2590 chrX 15681395 15681428 chrX 15681476 15681510 10 81 2.0 2.5 2.2 3.1 115 chrX 15681395 intergenic not near genes chrX 15681452 intergenic not near genes chrX 15681510 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-727 2591 chrX 15749657 15749684 chrX 15749760 15749787 6 103 1.5 2.0 1.8 2.1 130 chrX 15749657 intron CG8239 + chrX 15749722 intron CG8239 + chrX 15749787 intron CG8239 + chrX_6_15745001 chrX_15745001 RAL-727 2592 chrX 15898439 15898460 chrX 15898593 15898614 13 154 5.5 4.5 5.0 2.2 175 chrX 15898439 intron shi + chrX 15898526 intron shi + chrX 15898614 intron shi + chrX_13_15895001 chrX_15895001 RAL-727 2593 chrX 16092855 16092879 chrX 16092933 16092960 7 77 3.0 6.0 4.5 1.3 105 chrX 16092855 intergenic CG42353 -,CG42354 - chrX 16092908 intergenic CG42353 -,CG42354 - chrX 16092960 intergenic CG42353 -,CG42354 - chrX_7_16090001 chrX_16090001 RAL-727 2594 chrX 16222775 16222805 chrX 16231125 16231155 roo 7 8350 3.5 2.5 3.0 1.8 8380 chrX 16222775 intergenic not near genes chrX 16226965 intergenic not near genes chrX 16231155 intergenic not near genes chrX_7_16225001 chrX_16225001 RAL-727 2595 chrX 16235070 16235076 chrX 16235157 16235163 5 87 3.5 3.5 3.5 1.1 93 chrX 16235070 intergenic not near genes chrX 16235116 intergenic not near genes chrX 16235163 intergenic not near genes chrX_5_16235001 chrX_16235001 RAL-727 2596 chrX 16295526 16295550 chrX 16295610 16295634 12 84 3.5 0.0 1.8 4.3 108 chrX 16295526 intron CG9911 - chrX 16295580 intron CG9911 - chrX 16295634 intron CG9911 - chrX_12_16295001 chrX_16295001 RAL-727 2597 chrX 16340675 16340701 chrX 16349832 16349858 roo 6 9157 2.0 5.5 3.8 1.2 9183 chrX 16340675 intergenic Dsp1 + chrX 16345266 intergenic not near genes chrX 16349858 intergenic sl + chrX_6_16345001 chrX_16345001 RAL-727 2598 chrX 16366506 16366517 chrX 16366602 16366614 6 96 7.0 6.5 6.8 0.8 108 chrX 16366506 intron nonA + chrX 16366560 intron nonA + chrX 16366614 intron nonA + chrX_6_16365001 chrX_16365001 RAL-727 2599 chrX 16366520 16366529 chrX 16366599 16366600 7 86 4.5 5.0 4.8 1.2 80 chrX 16366520 intron nonA + chrX 16366560 intron nonA + chrX 16366600 intron nonA + chrX_7_16365001 chrX_16365001 RAL-727 2600 chrX 16437817 16437845 chrX 16437903 16437931 11 86 3.0 5.5 4.2 2.1 114 chrX 16437817 3` UTR,3` UTR hang +,CG9947 - chrX 16437874 3` UTR,3` UTR hang +,CG9947 - chrX 16437931 3` UTR,3` UTR hang +,CG9947 - chrX_11_16435001 chrX_16435001 RAL-727 2601 chrX 16492649 16492679 chrX 16498226 16498256 mdg3 16 5577 6.5 5.5 6.0 2.3 5607 chrX 16492649 intron para - chrX 16495452 intron para - chrX 16498256 intron para - chrX_16_16495001 chrX_16495001 RAL-727 2602 chrX 16529430 16529443 chrX 16529540 16529554 8 110 0.5 9.5 5.0 1.3 124 chrX 16529430 intron para - chrX 16529492 intron para - chrX 16529554 intron para - chrX_8_16525001 chrX_16525001 RAL-727 2603 chrX 16623482 16623503 chrX 16623568 16623589 10 86 3.0 0.5 1.8 3.6 107 chrX 16623482 intergenic not near genes chrX 16623536 intergenic Rok - chrX 16623589 intergenic Rok - chrX_10_16620001 chrX_16620001 RAL-727 2604 chrX 16650929 16650961 chrX 16651006 16651031 12 74 2.5 0.0 1.2 5.5 102 chrX 16650929 intergenic CG32573 +,CG42512 + chrX 16650980 intergenic CG32573 +,CG42512 + chrX 16651031 intergenic CG32573 +,CG42512 + chrX_12_16650001 chrX_16650001 RAL-727 2605 chrX 16689621 16689656 chrX 16689707 16689718 11 77 3.0 1.5 2.2 3.4 97 chrX 16689621 intron Sep4 - chrX 16689670 intron Sep4 - chrX 16689718 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-727 2606 chrX 16690454 16690471 chrX 16690533 16690550 8 78 5.5 1.0 3.2 1.9 96 chrX 16690454 intron Sep4 - chrX 16690502 intron Sep4 - chrX 16690550 intron Sep4 - chrX_8_16690001 chrX_16690001 RAL-727 2607 chrX 17011983 17011997 chrX 17012062 17012073 5 79 2.0 7.0 4.5 0.9 90 chrX 17011983 intron CG45002 - chrX 17012028 intron CG45002 - chrX 17012073 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-727 2608 chrX 17057935 17057963 chrX 17058176 17058204 pogo 9 241 1.0 5.5 3.2 2.1 269 chrX 17057935 intron CG45002 - chrX 17058070 intron CG45002 - chrX 17058204 intron CG45002 - chrX_9_17055001 chrX_17055001 RAL-727 2609 chrX 17063177 17063208 chrX 17063264 17063295 11 87 3.0 7.0 5.0 1.8 118 chrX 17063177 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063295 intron CG45002 - chrX_11_17060001 chrX_17060001 RAL-727 2610 chrX 17121535 17121558 chrX 17121618 17121641 11 82 3.0 1.0 2.0 3.7 106 chrX 17121535 intron CG5004 + chrX 17121588 intron CG5004 + chrX 17121641 intron CG5004 + chrX_11_17120001 chrX_17120001 RAL-727 2611 chrX 17195210 17195235 chrX 17200295 17200319 flea 5 5085 3.0 5.5 4.2 1.0 5109 chrX 17195210 3` UTR baz + chrX 17197764 3` UTR baz + chrX 17200319 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-727 2612 chrX 17237530 17237535 chrX 17237616 17237621 4 86 2.0 2.5 2.2 1.2 91 chrX 17237530 intron f + chrX 17237576 intron f + chrX 17237621 intron f + chrX_4_17235001 chrX_17235001 RAL-727 2613 chrX 17262182 17262195 chrX 17262268 17262281 8 86 8.5 6.0 7.2 1.0 99 chrX 17262182 intron f + chrX 17262232 intron f + chrX 17262281 intron f + chrX_8_17260001 chrX_17260001 RAL-727 2614 chrX 17282880 17282907 chrX 17282958 17282983 13 77 6.0 1.0 3.5 2.9 103 chrX 17282880 intron CG5445 + chrX 17282932 5` UTR CG5445 + chrX 17282983 intron CG5445 + chrX_13_17280001 chrX_17280001 RAL-727 2615 chrX 17290062 17290097 chrX 17290138 17290173 9 76 2.5 3.5 3.0 2.2 111 chrX 17290062 intron,intron CG5445 +,Fim - chrX 17290118 intron,intron CG5445 +,Fim - chrX 17290173 intron,intron CG5445 +,Fim - chrX_9_17290001 chrX_17290001 RAL-727 2616 chrX 17316368 17316396 chrX 17316452 17316480 11 83 3.0 0.0 1.5 4.4 112 chrX 17316368 intron B-H2 + chrX 17316424 intron B-H2 + chrX 17316480 intron B-H2 + chrX_11_17315001 chrX_17315001 RAL-727 2617 chrX 17427050 17427076 chrX 17427134 17427155 10 85 3.5 8.5 6.0 1.4 105 chrX 17427050 intron,intron CG12994 -,CG5613 + chrX 17427102 intron,intron CG12994 -,CG5613 + chrX 17427155 intron,intron CG12994 -,CG5613 + chrX_10_17425001 chrX_17425001 RAL-727 2618 chrX 17431390 17431393 chrX 17431711 17431719 jockey 4 328 2.0 6.0 4.0 0.8 329 chrX 17431390 intron CG12994 - chrX 17431554 intron CG12994 - chrX 17431719 intron CG12994 - chrX_4_17430001 chrX_17430001 RAL-727 2619 chrX 17455783 17455812 chrX 17455883 17455912 8 100 1.0 1.5 1.2 3.6 129 chrX 17455783 intergenic not near genes chrX 17455848 intergenic not near genes chrX 17455912 intergenic not near genes chrX_8_17455001 chrX_17455001 RAL-727 2620 chrX 17502350 17502363 chrX 17502430 17502443 5 80 5.5 3.0 4.2 1.0 93 chrX 17502350 intron CG43658 - chrX 17502396 intron CG43658 - chrX 17502443 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-727 2621 chrX 17556947 17556961 chrX 17557443 17557454 mdg1 4 496 3.5 5.0 4.2 0.8 507 chrX 17556947 intron CG43658 - chrX 17557200 intron CG43658 - chrX 17557454 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-727 2622 chrX 17708847 17708857 chrX 17708925 17708936 4 79 0.0 11.5 5.8 0.6 89 chrX 17708847 intron CG8173 - chrX 17708892 intron CG8173 - chrX 17708936 intron CG8173 - chrX_4_17705001 chrX_17705001 RAL-727 2623 chrX 17792957 17792983 chrX 17796248 17796280 flea 5 3296 2.0 2.0 2.0 1.7 3323 chrX 17792957 intron OdsH + chrX 17794618 intron OdsH + chrX 17796280 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-727 2624 chrX 17838102 17838115 chrX 17838178 17838193 4 78 8.0 4.5 6.2 0.6 91 chrX 17838102 intron CG6398 + chrX 17838148 intron CG6398 + chrX 17838193 intron CG6398 + chrX_4_17835001 chrX_17835001 RAL-727 2625 chrX 17939723 17939733 chrX 17939842 17939852 5 119 2.0 6.0 4.0 1.0 129 chrX 17939723 intergenic Sh - chrX 17939788 3` UTR Sh - chrX 17939852 3` UTR Sh - chrX_5_17935001 chrX_17935001 RAL-727 2626 chrX 17968894 17968926 chrX 17969012 17969044 9 118 5.0 3.0 4.0 1.8 150 chrX 17968894 intron Sh - chrX 17968969 intron Sh - chrX 17969044 intron Sh - chrX_9_17965001 chrX_17965001 RAL-727 2627 chrX 18427381 18427408 chrX 18427792 18427819 13 411 3.0 2.5 2.8 3.4 438 chrX 18427381 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427819 intergenic not near genes chrX_13_18425001 chrX_18425001 RAL-727 2628 chrX 18429495 18429527 chrX 18434806 18434838 Transpac 10 5311 4.0 4.5 4.2 1.9 5343 chrX 18429495 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434838 intergenic not near genes chrX_10_18430001 chrX_18430001 RAL-727 2629 chrX 18558787 18558807 chrX 18558866 18558889 13 82 1.5 4.5 3.0 3.2 102 chrX 18558787 intron Bx + chrX 18558838 intron Bx + chrX 18558889 intron Bx + chrX_13_18555001 chrX_18555001 RAL-727 2630 chrX 18574793 18574814 chrX 18574873 18574894 4 80 2.5 2.5 2.5 1.1 101 chrX 18574793 intergenic not near genes chrX 18574844 intergenic not near genes chrX 18574894 intergenic not near genes chrX_4_18570001 chrX_18570001 RAL-727 2631 chrX 18645013 18645045 chrX 18645111 18645143 12 97 7.0 6.0 6.5 1.6 130 chrX 18645013 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645143 intron Rip11 - chrX_12_18645001 chrX_18645001 RAL-727 2632 chrX 18671221 18671250 chrX 18671303 18671332 8 82 1.0 1.0 1.0 4.0 111 chrX 18671221 intergenic not near genes chrX 18671276 intergenic not near genes chrX 18671332 intergenic not near genes chrX_8_18670001 chrX_18670001 RAL-727 2633 chrX 18698849 18698876 chrX 18698966 18698993 11 117 2.5 9.5 6.0 1.6 144 chrX 18698849 intergenic not near genes chrX 18698921 intergenic not near genes chrX 18698993 intergenic not near genes chrX_11_18695001 chrX_18695001 RAL-727 2634 chrX 18774450 18774472 chrX 18774535 18774556 10 83 4.0 4.0 4.0 2.0 106 chrX 18774450 intergenic CCKLR-17D3 - chrX 18774503 intergenic CCKLR-17D3 - chrX 18774556 intergenic not near genes chrX_10_18770001 chrX_18770001 RAL-727 2635 chrX 18896516 18896542 chrX 18896627 18896635 6 106 4.5 2.0 3.2 1.4 119 chrX 18896516 3` UTR CG7349 + chrX 18896576 3` UTR CG7349 + chrX 18896635 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-727 2636 chrX 18910398 18910414 chrX 18910488 18910503 7 86 3.0 3.5 3.2 1.7 105 chrX 18910398 3` UTR CG7378 + chrX 18910450 3` UTR CG7378 + chrX 18910503 3` UTR CG7378 + chrX_7_18910001 chrX_18910001 RAL-727 2637 chrX 18957068 18957103 chrX 18965731 18965740 roo 12 8658 1.5 1.5 1.5 4.8 8672 chrX 18957068 intron CG43759 + chrX 18961404 intron CG43759 + chrX 18965740 intron CG43759 + chrX_12_18960001 chrX_18960001 RAL-727 2638 chrX 18973786 18973808 chrX 18974081 18974104 6 294 4.0 4.0 4.0 1.2 318 chrX 18973786 intron CG43759 + chrX 18973945 intron CG43759 + chrX 18974104 intron CG43759 + chrX_6_18970001 chrX_18970001 RAL-727 2639 chrX 19020592 19020623 chrX 19020670 19020701 15 77 0.0 3.5 1.8 5.4 109 chrX 19020592 intron CG43759 + chrX 19020646 intron CG43759 + chrX 19020701 intron CG43759 + chrX_15_19020001 chrX_19020001 RAL-727 2640 chrX 19060415 19060437 chrX 19065199 19065221 Doc 6 4784 6.5 5.0 5.8 0.9 4806 chrX 19060415 intron CG14190 + chrX 19062818 intron CG14190 + chrX 19065221 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-727 2641 chrX 19124438 19124462 chrX 19124526 19124550 5 88 2.5 3.5 3.0 1.2 112 chrX 19124438 intergenic CG15882 - chrX 19124494 intergenic CG15882 - chrX 19124550 intergenic CG15882 -,tgy - chrX_5_19120001 chrX_19120001 RAL-727 2642 chrX 19136552 19136585 chrX 19143472 19143504 412 8 6918 4.0 4.0 4.0 1.6 6952 chrX 19136552 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_8_19140001 chrX_19140001 RAL-727 2643 chrX 19187515 19187541 chrX 19187596 19187610 5 74 2.5 0.5 1.5 2.0 95 chrX 19187515 intergenic CG33253 + chrX 19187562 intergenic CG33253 +,Mec2 + chrX 19187610 intergenic CG33253 +,Mec2 + chrX_5_19185001 chrX_19185001 RAL-727 2644 chrX 13057298 13057300 chrX 19242812 19242814 21 6185514 29.0 16.5 22.8 0.9 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_21_16150001 chrX_16150001 RAL-727 2645 chrX 19315514 19315534 chrX 19315712 19315732 12 198 2.5 6.0 4.2 2.3 218 chrX 19315514 intron out - chrX 19315623 intron out - chrX 19315732 intron out - chrX_12_19315001 chrX_19315001 RAL-727 2646 chrX 19320241 19320253 chrX 19320325 19320341 6 86 5.5 8.5 7.0 0.8 100 chrX 19320241 intron out - chrX 19320291 intron out - chrX 19320341 intron out - chrX_6_19320001 chrX_19320001 RAL-727 2647 chrX 19356986 19357017 chrX 19358427 19358458 NOF 20 1441 7.5 1.0 4.2 3.8 1472 chrX 19356986 intron kek5 + chrX 19357722 intron kek5 + chrX 19358458 intron kek5 + chrX_20_19355001 chrX_19355001 RAL-727 2648 chrX 19380158 19380187 chrX 19380399 19380428 pogo 13 241 10.0 8.0 9.0 1.3 270 chrX 19380158 intron kek5 + chrX 19380293 intron kek5 + chrX 19380428 intron kek5 + chrX_13_19380001 chrX_19380001 RAL-727 2649 chrX 19404632 19404649 chrX 19404730 19404747 7 98 4.0 1.0 2.5 2.0 115 chrX 19404632 intron kek5 + chrX 19404690 intron kek5 + chrX 19404747 intron kek5 + chrX_7_19400001 chrX_19400001 RAL-727 2650 chrX 19472134 19472149 chrX 19472701 19472719 jockey 7 568 5.0 8.5 6.8 0.9 585 chrX 19472134 intergenic kek5 + chrX 19472426 intergenic not near genes chrX 19472719 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-727 2651 chrX 19500719 19500750 chrX 19500806 19500837 23 87 0.0 5.5 2.8 6.1 118 chrX 19500719 intron,intron CG14200 +,Pfrx + chrX 19500778 intron,intron CG14200 +,Pfrx + chrX 19500837 intron,intron CG14200 +,Pfrx + chrX_23_19500001 chrX_19500001 RAL-727 2652 chrX 19560678 19560690 chrX 19560777 19560789 6 99 1.0 7.5 4.2 1.2 111 chrX 19560678 3` UTR Grip84 - chrX 19560734 3` UTR Grip84 - chrX 19560789 3` UTR Grip84 - chrX_6_19560001 chrX_19560001 RAL-727 2653 chrX 19588968 19589000 chrX 19589050 19589077 10 79 4.5 4.5 4.5 1.8 109 chrX 19588968 exon CG14219 - chrX 19589022 exon CG14219 - chrX 19589077 exon CG14219 - chrX_10_19585001 chrX_19585001 RAL-727 2654 chrX 19593949 19593963 chrX 19594034 19594047 11 84 7.5 6.5 7.0 1.4 98 chrX 19593949 exon CG14205 + chrX 19593998 intron CG14205 + chrX 19594047 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-727 2655 chrX 19593964 19593976 chrX 19594032 19594061 7 80 4.5 5.5 5.0 1.2 97 chrX 19593964 exon CG14205 + chrX 19594012 intron CG14205 + chrX 19594061 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-727 2656 chrX 19674219 19674241 chrX 19674291 19674324 5 76 6.0 2.5 4.2 1.0 105 chrX 19674219 intron et - chrX 19674272 intron et - chrX 19674324 intron et - chrX_5_19670001 chrX_19670001 RAL-727 2657 chrX 19689407 19689435 chrX 19689485 19689513 11 77 3.5 1.5 2.5 3.1 106 chrX 19689407 intergenic Mer -,CG14227 - chrX 19689460 intergenic Mer - chrX 19689513 intergenic Mer - chrX_11_19685001 chrX_19685001 RAL-727 2658 chrX 19693751 19693788 chrX 19693836 19693873 9 85 6.0 0.0 3.0 2.2 122 chrX 19693751 intergenic CG14229 -,Mer - chrX 19693812 intergenic CG14229 -,Mer - chrX 19693873 intergenic CG14229 -,Mer - chrX_9_19690001 chrX_19690001 RAL-727 2659 chrX 19710077 19710089 chrX 19711863 19711870 S-element 8 1785 11.0 4.0 7.5 0.9 1793 chrX 19710077 intron meso18E - chrX 19710974 intron meso18E - chrX 19711870 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-727 2660 chrX 19710090 19710101 chrX 19711862 19711887 S-element 5 1780 6.5 4.0 5.2 0.8 1797 chrX 19710090 intron meso18E - chrX 19710988 intron meso18E - chrX 19711887 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-727 2661 chrX 19769511 19769532 chrX 19769587 19769607 9 77 3.5 9.0 6.2 1.2 96 chrX 19769511 intron vfl - chrX 19769559 intron vfl - chrX 19769607 intron vfl - chrX_9_19765001 chrX_19765001 RAL-727 2662 chrX 19838514 19838525 chrX 19838592 19838601 5 76 8.0 8.5 8.2 0.5 87 chrX 19838514 intron pico - chrX 19838558 intron pico - chrX 19838601 intron pico - chrX_5_19835001 chrX_19835001 RAL-727 2663 chrX 19880387 19880394 chrX 19880506 19880513 4 118 8.0 1.5 4.8 0.7 126 chrX 19880387 intron Hers + chrX 19880450 intron Hers + chrX 19880513 intron Hers + chrX_4_19880001 chrX_19880001 RAL-727 2664 chrX 19881453 19881485 chrX 19881534 19881564 13 80 6.0 1.5 3.8 2.7 111 chrX 19881453 intron Hers + chrX 19881508 intron Hers + chrX 19881564 intron Hers + chrX_13_19880001 chrX_19880001 RAL-727 2665 chrX 19883780 19883792 chrX 19883855 19883877 7 81 3.0 10.5 6.8 0.9 97 chrX 19883780 intron Hers + chrX 19883828 intron Hers + chrX 19883877 intron Hers + chrX_7_19880001 chrX_19880001 RAL-727 2666 chrX 19897380 19897415 chrX 19897457 19897492 11 77 4.5 4.0 4.2 2.1 112 chrX 19897380 intron Hers + chrX 19897436 intron Hers + chrX 19897492 intron Hers + chrX_11_19895001 chrX_19895001 RAL-727 2667 chrX 19983528 19983541 chrX 19983687 19983700 7 158 0.0 0.5 0.2 5.8 172 chrX 19983528 intergenic not near genes chrX 19983614 intergenic not near genes chrX 19983700 intergenic not near genes chrX_7_19980001 chrX_19980001 RAL-727 2668 chrX 19988881 19988885 chrX 19988957 19988962 5 76 4.0 4.5 4.2 1.0 81 chrX 19988881 intergenic not near genes chrX 19988922 intergenic not near genes chrX 19988962 intergenic not near genes chrX_5_19985001 chrX_19985001 RAL-727 2669 chrX 20041530 20041566 chrX 20041610 20041646 13 80 1.5 3.5 2.5 3.7 116 chrX 20041530 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041646 intron Dop2R - chrX_13_20040001 chrX_20040001 RAL-727 2670 chrX 20065803 20065831 chrX 20065882 20065910 9 78 2.5 2.5 2.5 2.6 107 chrX 20065803 intergenic not near genes chrX 20065856 intergenic not near genes chrX 20065910 intergenic not near genes chrX_9_20065001 chrX_20065001 RAL-727 2671 chrX 20082754 20082781 chrX 20082837 20082864 6 82 0.0 2.5 1.2 2.7 110 chrX 20082754 intergenic not near genes chrX 20082809 intergenic not near genes chrX 20082864 intergenic not near genes chrX_6_20080001 chrX_20080001 RAL-727 2672 chrX 20312884 20312911 chrX 20312962 20312983 13 77 2.0 3.0 2.5 3.7 99 chrX 20312884 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312983 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-727 2673 chrX 20374111 20374128 chrX 20374174 20374202 7 71 1.0 6.5 3.8 1.5 91 chrX 20374111 intergenic not near genes chrX 20374156 intergenic not near genes chrX 20374202 intergenic not near genes chrX_7_20370001 chrX_20370001 RAL-727 2674 chrX 20377329 20377349 chrX 20378796 20378816 hobo 7 1467 1.5 8.0 4.8 1.2 1487 chrX 20377329 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378816 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-727 2675 chrX 20426184 20426207 chrX 20428380 20428401 4 2194 26.5 16.5 21.5 0.2 2217 chrX 20426184 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428401 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-727 2676 chrX 20468014 20468038 chrX 20468103 20468127 7 84 3.5 1.0 2.2 2.2 113 chrX 20468014 intron GstT3 + chrX 20468070 intron GstT3 + chrX 20468127 intron GstT3 + chrX_7_20465001 chrX_20465001 RAL-727 2677 chrX 20484393 20484405 chrX 20484498 20484510 4 105 1.5 8.0 4.8 0.7 117 chrX 20484393 intron RhoGAP19D - chrX 20484452 intron RhoGAP19D - chrX 20484510 intron RhoGAP19D - chrX_4_20480001 chrX_20480001 RAL-727 2678 chrX 20493911 20493929 chrX 20494072 20494090 11 161 0.0 3.5 1.8 3.9 179 chrX 20493911 intron RhoGAP19D - chrX 20494000 intron RhoGAP19D - chrX 20494090 intron RhoGAP19D - chrX_11_20490001 chrX_20490001 RAL-727 2679 chrX 20504138 20504158 chrX 20505651 20505679 transib2 5 1519 5.5 8.0 6.8 0.6 1541 chrX 20504138 intron RhoGAP19D - chrX 20504908 intron RhoGAP19D - chrX 20505679 intron RhoGAP19D - chrX_5_20500001 chrX_20500001 RAL-727 2680 chrX 20517246 20517253 chrX 20517332 20517338 4 86 5.5 0.0 2.8 1.1 92 chrX 20517246 intron Tak1 - chrX 20517292 intron Tak1 - chrX 20517338 intron Tak1 - chrX_4_20515001 chrX_20515001 RAL-727 2681 chrX 20531764 20531793 chrX 20531863 20531892 10 99 1.0 5.5 3.2 2.4 128 chrX 20531764 intergenic not near genes chrX 20531828 intergenic not near genes chrX 20531892 intergenic not near genes chrX_10_20530001 chrX_20530001 RAL-727 2682 chrX 20578073 20578107 chrX 20578152 20578186 6 77 1.5 1.5 1.5 2.4 113 chrX 20578073 intergenic not near genes chrX 20578130 intergenic not near genes chrX 20578186 intergenic not near genes chrX_6_20575001 chrX_20575001 RAL-727 2683 chrX 20635434 20635446 chrX 20635600 20635612 6 166 1.5 5.0 3.2 1.4 178 chrX 20635434 intergenic not near genes chrX 20635523 intergenic not near genes chrX 20635612 intergenic not near genes chrX_6_20635001 chrX_20635001 RAL-727 2684 chrX 20662316 20662329 chrX 20662399 20662412 5 82 7.0 0.0 3.5 1.1 96 chrX 20662316 intron CG1835 + chrX 20662364 intron CG1835 + chrX 20662412 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-727 2685 chrX 20710419 20710442 chrX 20710497 20710520 6 78 0.0 4.5 2.2 1.9 101 chrX 20710419 intergenic not near genes chrX 20710470 intergenic not near genes chrX 20710520 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-727 2686 chrX 20780226 20780235 chrX 20780451 20780460 7 225 6.5 4.0 5.2 1.1 234 chrX 20780226 intron,3` UTR shakB -,CG32507 - chrX 20780343 intron,3` UTR shakB -,CG32507 - chrX 20780460 intron,3` UTR shakB -,CG32507 - chrX_7_20780001 chrX_20780001 RAL-727 2687 chrX 20836728 20836758 chrX 20844330 20844360 roo 13 7600 1.5 4.5 3.0 3.2 7632 chrX 20836728 intron shakB - chrX 20840544 intron shakB - chrX 20844360 intron shakB - chrX_13_20840001 chrX_20840001 RAL-727 2688 chrX 20915043 20915075 chrX 20915214 20915246 12 171 2.5 1.5 2.0 4.0 203 chrX 20915043 intron shakB - chrX 20915144 intron shakB - chrX 20915246 intron shakB - chrX_12_20915001 chrX_20915001 RAL-727 2689 chrX 20940717 20940753 chrX 20942186 20942222 hobo 15 1468 3.5 6.5 5.0 2.5 1505 chrX 20940717 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942222 intergenic not near genes chrX_15_20940001 chrX_20940001 RAL-727 2690 chrX 20956987 20957013 chrX 20962429 20962455 I-element 10 5442 5.0 5.0 5.0 1.7 5468 chrX 20956987 intergenic not near genes chrX 20959721 intergenic not near genes chrX 20962455 intergenic Ser6 - chrX_10_20955001 chrX_20955001 RAL-727 2691 chrX 20981036 20981057 chrX 20981139 20981160 6 103 3.0 2.0 2.5 1.7 124 chrX 20981036 intergenic not near genes chrX 20981098 intergenic not near genes chrX 20981160 intergenic not near genes chrX_6_20980001 chrX_20980001 RAL-727 2692 chrX 21008659 21008689 chrX 21008746 21008770 9 86 0.5 1.5 1.0 4.5 111 chrX 21008659 intergenic not near genes chrX 21008714 intergenic not near genes chrX 21008770 intergenic not near genes chrX_9_21005001 chrX_21005001 RAL-727 2693 chrX 21022255 21022273 chrX 21022424 21022441 4 168 15.0 11.0 13.0 0.3 186 chrX 21022255 intergenic not near genes chrX 21022348 intergenic not near genes chrX 21022441 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-727 2694 chrX 21022273 21022278 chrX 21022355 21022360 5 82 16.0 8.5 12.2 0.4 87 chrX 21022273 intergenic not near genes chrX 21022316 intergenic not near genes chrX 21022360 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-727 2695 chrX 21029180 21029184 chrX 21029372 21029376 4 200 0.0 8.5 4.2 0.8 196 chrX 21029180 3` UTR CG1529 - chrX 21029278 3` UTR CG1529 - chrX 21029376 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-727 2696 chrX 21055696 21055723 chrX 21055772 21055799 14 75 4.0 2.0 3.0 3.5 103 chrX 21055696 intron bves + chrX 21055748 intron bves + chrX 21055799 intron bves + chrX_14_21055001 chrX_21055001 RAL-727 2697 chrX 21061865 21061886 chrX 21062350 21062371 roo 11 485 2.5 3.5 3.0 2.8 506 chrX 21061865 intron bves + chrX 21062118 intron bves + chrX 21062371 intron,3` UTR bves +,CG32512 - chrX_11_21060001 chrX_21060001 RAL-727 2698 chrX 21086129 21086164 chrX 21087157 21087192 jockey 14 1028 3.0 3.0 3.0 3.5 1063 chrX 21086129 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087192 intergenic not near genes chrX_14_21085001 chrX_21085001 RAL-727 2699 chrX 21088045 21088069 chrX 21088174 21088197 16 130 3.5 2.0 2.8 4.2 152 chrX 21088045 intergenic not near genes chrX 21088121 intergenic not near genes chrX 21088197 intergenic not near genes chrX_16_21085001 chrX_21085001 RAL-727 2700 chrX 21187797 21187806 chrX 21187884 21187893 4 87 2.5 1.5 2.0 1.3 96 chrX 21187797 intergenic CR45506 + chrX 21187845 intergenic CR45506 + chrX 21187893 intergenic CR45506 + chrX_4_21185001 chrX_21185001 RAL-727 2701 chrX 21188839 21188852 chrX 21188927 21188940 11 88 9.0 3.5 6.2 1.5 101 chrX 21188839 intergenic CR45506 + chrX 21188890 intergenic CR45506 + chrX 21188940 intergenic CR45506 + chrX_11_21185001 chrX_21185001 RAL-727 2702 chrX 21188853 21188872 chrX 21188925 21188960 8 85 4.0 2.5 3.2 1.9 107 chrX 21188853 intergenic CR45506 + chrX 21188906 intergenic CR45506 + chrX 21188960 intergenic CR45506 + chrX_8_21185001 chrX_21185001 RAL-727 2703 chrX 21197056 21197088 chrX 21197134 21197152 11 73 1.5 3.0 2.2 3.4 96 chrX 21197056 intergenic not near genes chrX 21197104 intergenic not near genes chrX 21197152 intergenic not near genes chrX_11_21195001 chrX_21195001 RAL-727 2704 chrX 21414371 21414380 chrX 21414447 21414456 10 76 4.0 12.0 8.0 1.1 85 chrX 21414371 intergenic not near genes chrX 21414414 intergenic not near genes chrX 21414456 intergenic not near genes chrX_10_21410001 chrX_21410001 RAL-727 2705 chrX 21419712 21419737 chrX 21419801 21419801 5 81 1.5 8.5 5.0 0.8 89 chrX 21419712 intergenic not near genes chrX 21419756 intergenic not near genes chrX 21419801 intergenic not near genes chrX_5_21415001 chrX_21415001 RAL-727 2706 chrX 21455213 21455231 chrX 21455392 21455400 4 176 8.0 0.0 4.0 0.8 187 chrX 21455213 intron CG42343 - chrX 21455306 intron CG42343 - chrX 21455400 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-727 2707 chrX 21458694 21458727 chrX 21464130 21464163 Ivk 18 5435 4.0 8.5 6.2 2.5 5469 chrX 21458694 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464163 intergenic not near genes chrX_18_21460001 chrX_21460001 RAL-727 2708 chrX 21474403 21474432 chrX 21474769 21474797 1731 13 364 4.0 2.5 3.2 3.1 394 chrX 21474403 intergenic not near genes chrX 21474600 intergenic not near genes chrX 21474797 intergenic not near genes chrX_13_21470001 chrX_21470001 RAL-727 2709 chrX 21492271 21492306 chrX 21492384 21492419 13 112 2.5 2.0 2.2 4.1 148 chrX 21492271 intergenic not near genes chrX 21492345 intergenic not near genes chrX 21492419 intergenic not near genes chrX_13_21490001 chrX_21490001 RAL-727 2710 chrX 21500568 21500587 chrX 21500769 21500788 5 201 0.0 3.0 1.5 2.0 220 chrX 21500568 intron CR45082 - chrX 21500678 intron CR45082 - chrX 21500788 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-727 2711 chrX 21575544 21575558 chrX 21575623 21575637 7 79 7.0 3.5 5.2 1.1 93 chrX 21575544 intergenic not near genes chrX 21575590 intergenic not near genes chrX 21575637 intergenic not near genes chrX_7_21575001 chrX_21575001 RAL-727 2712 chrX 21581556 21581570 chrX 21581637 21581651 4 81 1.0 0.5 0.8 2.2 95 chrX 21581556 intergenic not near genes chrX 21581604 intergenic not near genes chrX 21581651 intergenic not near genes chrX_4_21580001 chrX_21580001 RAL-727 2713 chrX 21592397 21592421 chrX 21592726 21592752 8 329 3.5 2.0 2.8 2.1 355 chrX 21592397 intergenic not near genes chrX 21592574 intergenic not near genes chrX 21592752 intergenic not near genes chrX_8_21590001 chrX_21590001 RAL-727 2714 chrX 21668259 21668267 chrX 21668344 21668352 4 85 5.0 1.0 3.0 1.0 93 chrX 21668259 intergenic not near genes chrX 21668306 intergenic not near genes chrX 21668352 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-727 2715 chrX 21668268 21668289 chrX 21668343 21668369 7 83 1.0 1.0 1.0 3.5 101 chrX 21668268 intergenic not near genes chrX 21668318 intergenic not near genes chrX 21668369 intergenic not near genes chrX_7_21665001 chrX_21665001 RAL-727 2716 chrX 22478871 22478897 chrX 22479004 22479027 16 132 0.5 6.5 3.5 3.6 156 chrX 22478871 intron CG12576 - chrX 22478949 intron CG12576 - chrX 22479027 intron CG12576 - chrX_16_22475001 chrX_22475001 RAL-727 2717 chrX 22564557 22564576 chrX 22575131 22575148 jockey 9 10572 20.0 9.5 14.8 0.6 10591 chrX 22564557 intergenic not near genes chrX 22569852 intergenic not near genes chrX 22575148 intergenic not near genes chrX_9_22565001 chrX_22565001 RAL-727 2718 chrX 22580243 22580273 chrX 22580323 22580337 7 81 3.5 6.0 4.8 1.2 94 chrX 22580243 intergenic not near genes chrX 22580290 intergenic not near genes chrX 22580337 intergenic not near genes chrX_7_22580001 chrX_22580001 RAL-727 2719 chrX 22660573 22660599 chrX 22660656 22660670 9 82 3.0 0.5 1.8 3.2 97 chrX 22660573 intron CR44997 + chrX 22660622 intron CR44997 + chrX 22660670 intron CR44997 + chrX_9_22660001 chrX_22660001 RAL-727 2720 chrX 22677291 22677325 chrX 22677500 22677534 17 208 5.0 4.0 4.5 3.1 243 chrX 22677291 intron CR44997 + chrX 22677412 intron CR44997 + chrX 22677534 intron CR44997 + chrX_17_22675001 chrX_22675001 RAL-727 2721 chrX 22697496 22697505 chrX 22701791 22701802 Juan 4 4296 4.0 5.5 4.8 0.7 4306 chrX 22697496 intron CR44997 + chrX 22699649 intron CR44997 + chrX 22701802 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-727 2722 chrX 22697507 22697516 chrX 22701788 22701813 Juan 4 4292 5.5 4.5 5.0 0.7 4306 chrX 22697507 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701813 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-727 2723 chrX 22764374 22764395 chrX 22764470 22764491 10 95 3.0 2.0 2.5 2.9 117 chrX 22764374 intron CR44997 + chrX 22764432 intron CR44997 + chrX 22764491 intron CR44997 + chrX_10_22760001 chrX_22760001 RAL-727 2724 chrX 22771505 22771537 chrX 22774796 22774825 297 13 3290 3.0 4.0 3.5 2.9 3320 chrX 22771505 intron CR44997 + chrX 22773165 intron CR44997 + chrX 22774825 intron CR44997 + chrX_13_22770001 chrX_22770001 RAL-727 2725 chrX 22784089 22784105 chrX 22784160 22784188 8 82 3.0 1.0 2.0 2.7 99 chrX 22784089 intron CR44997 + chrX 22784138 intron CR44997 + chrX 22784188 intron CR44997 + chrX_8_22780001 chrX_22780001 RAL-727 2726 chrX 22797010 22797024 chrX 22797089 22797094 6 82 0.0 6.5 3.2 1.4 84 chrX 22797010 intron CR44997 + chrX 22797052 intron CR44997 + chrX 22797094 intron CR44997 + chrX_6_22795001 chrX_22795001 RAL-727 2727 chrX 22867978 22868009 chrX 22868092 22868123 10 114 3.5 0.0 1.8 3.6 145 chrX 22867978 exon CG42346 + chrX 22868050 intron CG42346 + chrX 22868123 intron CG42346 + chrX_10_22865001 chrX_22865001 RAL-727 2728 chrX 22870883 22870891 chrX 22870974 22870982 4 90 1.5 3.0 2.2 1.2 99 chrX 22870883 intron,3` UTR CG42346 +,CR43656 - chrX 22870932 intron,3` UTR CG42346 +,CR43656 - chrX 22870982 intron,3` UTR CG42346 +,CR43656 - chrX_4_22870001 chrX_22870001 RAL-727 2729 chrX 22967392 22967513 chrX 23154543 23154690 diver 5 187161 7.0 10.5 8.8 0.5 187298 chrX 22967392 intergenic not near genes chrX 23061041 intergenic not near genes chrX 23154690 intergenic not near genes chrX_5_23060001 chrX_23060001 RAL-727 2730 chrX 22987119 22987133 chrX 22989763 22989792 Burdock 6 2656 3.5 3.5 3.5 1.3 2673 chrX 22987119 intron,intron stnA -,stnB - chrX 22988456 intron,intron stnA -,stnB - chrX 22989792 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-727 2731 chrX 22996309 22996337 chrX 23003542 23003571 roo 13 7234 2.0 3.5 2.8 3.4 7262 chrX 22996309 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_13_22995001 chrX_22995001 RAL-727 2732 chrY 864719 864733 chrY 864796 864810 5 77 21.0 21.0 21.0 0.2 91 chrY 864719 intergenic not near genes chrY 864764 intergenic not near genes chrY 864810 intergenic not near genes chrY_5_860001 chrY_860001 RAL-727 2733 chrY 975803 975827 chrY 975882 975930 4 111 94.0 126.0 110.0 0.0 127 chrY 975803 intergenic not near genes chrY 975866 intergenic not near genes chrY 975930 intergenic not near genes chrY_4_975001 chrY_975001 RAL-727 2734 chrY 1419913 1419932 chrY 1420167 1420186 invader2 4 254 7.0 10.5 8.8 0.4 273 chrY 1419913 intergenic not near genes chrY 1420050 intergenic not near genes chrY 1420186 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-727 2735 chrY 1420639 1420648 chrY 1420786 1420794 5 146 4.5 11.5 8.0 0.6 155 chrY 1420639 intergenic not near genes chrY 1420716 intergenic not near genes chrY 1420794 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-727