SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47483 chr2L 52563 52588 jockey 4 5102 6.5 5.0 5.8 0.6 5130 chr2L 47458 intron Cda5 - chr2L 50023 intron Cda5 - chr2L 52588 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-721 2 chr2L 89716 89745 chr2L 89793 89814 5 73 3.5 1.5 2.5 1.4 98 chr2L 89716 intergenic not near genes chr2L 89765 intergenic not near genes chr2L 89814 intergenic not near genes chr2L_5_85001 chr2L_85001 RAL-721 3 chr2L 179461 179476 chr2L 179543 179559 5 83 3.0 1.0 2.0 1.7 98 chr2L 179461 intron spen + chr2L 179510 intron spen + chr2L 179559 intron spen + chr2L_5_175001 chr2L_175001 RAL-721 4 chr2L 314138 314157 chr2L 314215 314234 5 77 4.0 2.5 3.2 1.2 96 chr2L 314138 intron Plc21C + chr2L 314186 intron Plc21C + chr2L 314234 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-721 5 chr2L 323455 323485 chr2L 323533 323560 10 76 2.0 3.0 2.5 2.9 105 chr2L 323455 intron Plc21C + chr2L 323508 intron Plc21C + chr2L 323560 intron Plc21C + chr2L_10_320001 chr2L_320001 RAL-721 6 chr2L 325311 325339 chr2L 325536 325564 9 225 0.5 4.0 2.2 2.8 253 chr2L 325311 intron Plc21C + chr2L 325438 intron Plc21C + chr2L 325564 intron,3` UTR Plc21C +,CG43755 - chr2L_9_325001 chr2L_325001 RAL-721 7 chr2L 429323 429332 chr2L 429426 429431 5 102 7.0 4.5 5.8 0.7 108 chr2L 429323 intergenic not near genes chr2L 429377 intergenic not near genes chr2L 429431 intergenic not near genes chr2L_5_425001 chr2L_425001 RAL-721 8 chr2L 429336 429349 chr2L 429420 429445 5 98 3.0 3.5 3.2 1.2 109 chr2L 429336 intergenic not near genes chr2L 429390 intergenic not near genes chr2L 429445 intergenic not near genes chr2L_5_425001 chr2L_425001 RAL-721 9 chr2L 630309 630330 chr2L 630400 630422 4 91 0.0 1.5 0.8 2.2 113 chr2L 630309 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630422 intergenic not near genes chr2L_4_630001 chr2L_630001 RAL-721 10 chr2L 668433 668463 chr2L 668510 668531 7 75 1.0 0.5 0.8 3.9 98 chr2L 668433 intron ds - chr2L 668482 intron ds - chr2L 668531 intron ds - chr2L_7_665001 chr2L_665001 RAL-721 11 chr2L 686923 686949 chr2L 695960 695988 roo 9 9039 2.0 3.5 2.8 2.4 9065 chr2L 686923 intron ds - chr2L 691456 intron ds - chr2L 695988 intron ds - chr2L_9_690001 chr2L_690001 RAL-721 12 chr2L 770472 770494 chr2L 772250 772250 Bari1 4 1770 4.0 3.0 3.5 0.9 1778 chr2L 770472 intergenic not near genes chr2L 771361 intergenic not near genes chr2L 772250 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-721 13 chr2L 877851 877877 chr2L 877931 877943 7 78 2.0 6.0 4.0 1.4 92 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877897 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-721 14 chr2L 908379 908404 chr2L 908458 908483 7 79 3.5 4.5 4.0 1.4 104 chr2L 908379 intergenic not near genes chr2L 908431 intergenic not near genes chr2L 908483 intergenic not near genes chr2L_7_905001 chr2L_905001 RAL-721 15 chr2L 922478 922493 chr2L 922559 922569 5 79 0.5 3.0 1.8 1.8 91 chr2L 922478 intergenic CG4341 + chr2L 922524 intergenic CG4341 + chr2L 922569 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-721 16 chr2L 931650 931669 chr2L 931729 931748 5 78 3.0 3.0 3.0 1.2 98 chr2L 931650 intron CG4341 + chr2L 931699 intron CG4341 + chr2L 931748 intron CG4341 + chr2L_5_930001 chr2L_930001 RAL-721 17 chr2L 1074059 1074094 chr2L 1074139 1074161 7 74 2.0 6.5 4.2 1.3 102 chr2L 1074059 intron S - chr2L 1074110 intron S - chr2L 1074161 intron S - chr2L_7_1070001 chr2L_1070001 RAL-721 18 chr2L 1126675 1126699 chr2L 1126751 1126775 13 74 4.0 5.0 4.5 2.4 100 chr2L 1126675 intron Pino - chr2L 1126725 intron Pino - chr2L 1126775 intron Pino - chr2L_13_1125001 chr2L_1125001 RAL-721 19 chr2L 1137653 1137687 chr2L 1137833 1137867 8 179 1.5 1.5 1.5 3.2 214 chr2L 1137653 intron CG4577 + chr2L 1137760 intron CG4577 + chr2L 1137867 intron CG4577 + chr2L_8_1135001 chr2L_1135001 RAL-721 20 chr2L 1220127 1220161 chr2L 1227593 1227627 blood 8 7464 1.5 0.0 0.8 4.4 7500 chr2L 1220127 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-721 21 chr2L 1327183 1327195 chr2L 1327582 1327584 4 397 3.0 2.0 2.5 1.1 401 chr2L 1327183 intergenic not near genes chr2L 1327384 intergenic not near genes chr2L 1327584 intergenic not near genes chr2L_4_1325001 chr2L_1325001 RAL-721 22 chr2L 1536504 1536526 chr2L 1536635 1536637 5 127 0.5 3.5 2.0 1.7 133 chr2L 1536504 intergenic not near genes chr2L 1536570 intergenic not near genes chr2L 1536637 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-721 23 chr2L 1589002 1589022 chr2L 1589077 1589101 6 78 3.0 4.5 3.8 1.2 99 chr2L 1589002 intron haf + chr2L 1589052 intron haf + chr2L 1589101 intron haf + chr2L_6_1585001 chr2L_1585001 RAL-721 24 chr2L 1591872 1591894 chr2L 1591949 1591978 4 82 1.0 0.5 0.8 2.2 106 chr2L 1591872 intron haf + chr2L 1591925 intron haf + chr2L 1591978 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-721 25 chr2L 1711365 1711387 chr2L 1711680 1711687 mdg3 5 316 2.5 2.0 2.2 1.6 322 chr2L 1711365 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711526 3` UTR frtz - chr2L 1711687 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-721 26 chr2L 1744808 1744831 chr2L 1744886 1744900 6 76 2.5 2.5 2.5 1.7 92 chr2L 1744808 intron CG17646 + chr2L 1744854 intron CG17646 + chr2L 1744900 intron CG17646 + chr2L_6_1740001 chr2L_1740001 RAL-721 27 chr2L 2068833 2068835 chr2L 2069001 2069019 4 178 3.5 2.0 2.8 1.1 186 chr2L 2068833 intron dpr3 - chr2L 2068926 intron dpr3 - chr2L 2069019 intron dpr3 - chr2L_4_2065001 chr2L_2065001 RAL-721 28 chr2L 2100387 2100398 chr2L 2109531 2109548 roo 6 9146 2.5 2.5 2.5 1.7 9161 chr2L 2100387 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-721 29 chr2L 2220341 2220362 chr2L 2220425 2220446 5 82 2.0 3.5 2.8 1.3 105 chr2L 2220341 exon mio + chr2L 2220394 exon mio + chr2L 2220446 3` UTR mio + chr2L_5_2220001 chr2L_2220001 RAL-721 30 chr2L 2260804 2260837 chr2L 2260887 2260917 6 84 2.0 2.0 2.0 2.0 113 chr2L 2260804 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260917 intergenic not near genes chr2L_6_2260001 chr2L_2260001 RAL-721 31 chr2L 2618034 2618070 chr2L 2618113 2618148 20 79 1.0 0.0 0.5 13.3 114 chr2L 2618034 intergenic not near genes chr2L 2618091 intergenic not near genes chr2L 2618148 intergenic not near genes chr2L_20_2615001 chr2L_2615001 RAL-721 32 chr2L 2661201 2661232 chr2L 2663039 2663069 I-element 5 1831 0.5 2.5 1.5 2.0 1868 chr2L 2661201 intergenic not near genes chr2L 2662135 intergenic not near genes chr2L 2663069 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-721 33 chr2L 2667643 2667658 chr2L 2667703 2667737 9 74 3.0 2.5 2.8 2.4 94 chr2L 2667643 intergenic not near genes chr2L 2667690 intergenic not near genes chr2L 2667737 intergenic not near genes chr2L_9_2665001 chr2L_2665001 RAL-721 34 chr2L 2698876 2698889 chr2L 2698963 2698976 7 87 3.0 2.0 2.5 2.0 100 chr2L 2698876 intron CG31690 + chr2L 2698926 intron CG31690 + chr2L 2698976 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-721 35 chr2L 2719429 2719444 chr2L 2719505 2719520 6 75 1.0 5.0 3.0 1.5 91 chr2L 2719429 3` UTR CG31690 + chr2L 2719474 intergenic CG31690 + chr2L 2719520 intergenic CG31690 + chr2L_6_2715001 chr2L_2715001 RAL-721 36 chr2L 2826537 2826574 chr2L 2826629 2826631 6 76 0.0 0.5 0.2 5.0 94 chr2L 2826537 intron Duox - chr2L 2826584 intron Duox - chr2L 2826631 intron Duox - chr2L_6_2825001 chr2L_2825001 RAL-721 37 chr2L 2933303 2933326 chr2L 2935480 2935495 pogo 6 2175 4.0 6.5 5.2 1.0 2192 chr2L 2933303 intron lilli + chr2L 2934399 intron lilli + chr2L 2935495 intron lilli + chr2L_6_2930001 chr2L_2930001 RAL-721 38 chr2L 2937434 2937453 chr2L 2937503 2937530 4 74 2.5 2.5 2.5 1.1 96 chr2L 2937434 intron lilli + chr2L 2937482 intron lilli + chr2L 2937530 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-721 39 chr2L 3073029 3073060 chr2L 3078232 3078263 copia 9 5203 4.0 4.0 4.0 1.8 5234 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078263 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-721 40 chr2L 3108880 3108894 chr2L 3108947 3108970 6 72 3.0 0.0 1.5 2.4 90 chr2L 3108880 intron toc - chr2L 3108925 intron toc - chr2L 3108970 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-721 41 chr2L 3147292 3147307 chr2L 3147350 3147383 6 72 2.0 1.5 1.8 2.1 91 chr2L 3147292 3` UTR Mad - chr2L 3147338 3` UTR Mad - chr2L 3147383 3` UTR Mad - chr2L_6_3145001 chr2L_3145001 RAL-721 42 chr2L 3314695 3314726 chr2L 3314772 3314803 6 75 1.5 1.5 1.5 2.4 108 chr2L 3314695 intron CG3277 + chr2L 3314749 intron CG3277 + chr2L 3314803 intron CG3277 + chr2L_6_3310001 chr2L_3310001 RAL-721 43 chr2L 3393789 3393816 chr2L 3393868 3393896 5 81 3.0 3.5 3.2 1.2 107 chr2L 3393789 intergenic not near genes chr2L 3393842 intergenic not near genes chr2L 3393896 intergenic not near genes chr2L_5_3390001 chr2L_3390001 RAL-721 44 chr2L 3482155 3482176 chr2L 3482245 3482266 6 90 2.0 0.0 1.0 3.0 111 chr2L 3482155 intron CG15414 - chr2L 3482210 intron CG15414 - chr2L 3482266 intron CG15414 - chr2L_6_3480001 chr2L_3480001 RAL-721 45 chr2L 3508364 3508376 chr2L 3508433 3508454 6 76 0.0 2.5 1.2 2.7 90 chr2L 3508364 intergenic CR45299 +,tim - chr2L 3508409 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-721 46 chr2L 3582879 3582911 chr2L 3582955 3582988 7 72 1.0 1.5 1.2 3.2 109 chr2L 3582879 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-721 47 chr2L 3632357 3632388 chr2L 3632480 3632511 11 122 2.0 2.5 2.2 3.4 154 chr2L 3632357 intron for - chr2L 3632434 intron for - chr2L 3632511 intron for - chr2L_11_3630001 chr2L_3630001 RAL-721 48 chr2L 3819035 3819058 chr2L 3819117 3819140 4 82 5.0 0.0 2.5 1.1 105 chr2L 3819035 intergenic not near genes chr2L 3819088 intergenic not near genes chr2L 3819140 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-721 49 chr2L 3846467 3846497 chr2L 3846543 3846573 6 76 4.0 5.0 4.5 1.1 106 chr2L 3846467 intergenic not near genes chr2L 3846520 intergenic not near genes chr2L 3846573 intergenic not near genes chr2L_6_3845001 chr2L_3845001 RAL-721 50 chr2L 3959183 3959201 chr2L 3959259 3959277 4 74 2.0 1.0 1.5 1.6 94 chr2L 3959183 intron fred - chr2L 3959230 intron fred - chr2L 3959277 intron fred - chr2L_4_3955001 chr2L_3955001 RAL-721 51 chr2L 4159409 4159417 chr2L 4159609 4159617 4 200 6.5 0.0 3.2 1.0 208 chr2L 4159409 intergenic not near genes chr2L 4159513 intergenic not near genes chr2L 4159617 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-721 52 chr2L 4238031 4238051 chr2L 4238221 4238240 6 189 2.5 3.5 3.0 1.5 209 chr2L 4238031 intergenic not near genes chr2L 4238136 intergenic not near genes chr2L 4238240 intergenic not near genes chr2L_6_4235001 chr2L_4235001 RAL-721 53 chr2L 4285709 4285736 chr2L 4285788 4285814 6 76 3.5 0.5 2.0 2.0 105 chr2L 4285709 intron tutl + chr2L 4285762 intron tutl + chr2L 4285814 intron tutl + chr2L_6_4285001 chr2L_4285001 RAL-721 54 chr2L 4351474 4351494 chr2L 4351549 4351565 8 73 3.0 1.0 2.0 2.7 91 chr2L 4351474 intergenic CR44700 + chr2L 4351520 intergenic CR44700 + chr2L 4351565 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-721 55 chr2L 4575121 4575132 chr2L 4575201 4575212 5 80 1.5 3.5 2.5 1.4 91 chr2L 4575121 intron dp - chr2L 4575166 intron dp - chr2L 4575212 intron dp - chr2L_5_4575001 chr2L_4575001 RAL-721 56 chr2L 4601703 4601735 chr2L 4609144 4609176 mdg1 7 7439 3.5 2.0 2.8 1.8 7473 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-721 57 chr2L 4708737 4708752 chr2L 4708812 4708817 5 74 4.0 0.5 2.2 1.6 80 chr2L 4708737 intron CG34351 + chr2L 4708777 intron CG34351 + chr2L 4708817 intron CG34351 + chr2L_5_4705001 chr2L_4705001 RAL-721 58 chr2L 4792725 4792756 chr2L 4792833 4792864 8 107 3.0 2.0 2.5 2.3 139 chr2L 4792725 intron CG15630 - chr2L 4792794 intron CG15630 - chr2L 4792864 intron CG15630 - chr2L_8_4790001 chr2L_4790001 RAL-721 59 chr2L 4819497 4819516 chr2L 4819619 4819638 5 123 1.5 4.5 3.0 1.2 141 chr2L 4819497 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819638 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-721 60 chr2L 4867722 4867728 chr2L 4867893 4867894 5 170 6.0 2.0 4.0 1.0 172 chr2L 4867722 intron pog + chr2L 4867808 intron pog + chr2L 4867894 intron pog + chr2L_5_4865001 chr2L_4865001 RAL-721 61 chr2L 4953511 4953542 chr2L 4953752 4953783 pogo 9 236 2.5 1.5 2.0 3.0 272 chr2L 4953511 intergenic Jon25Bii - chr2L 4953647 intergenic not near genes chr2L 4953783 intergenic Jon25Bi - chr2L_9_4950001 chr2L_4950001 RAL-721 62 chr2L 5120999 5121004 chr2L 5121068 5121098 5 89 3.5 3.0 3.2 1.2 99 chr2L 5120999 intron Msp300 + chr2L 5121048 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_5_5120001 chr2L_5120001 RAL-721 63 chr2L 5165992 5166003 chr2L 5171472 5171483 5 5478 0.5 27.5 14.0 0.3 5491 chr2L 5165992 intron Msp300 + chr2L 5168738 intron Msp300 + chr2L 5171483 intron Msp300 + chr2L_5_5165001 chr2L_5165001 RAL-721 64 chr2L 5304606 5304631 chr2L 5304691 5304727 7 91 3.0 0.0 1.5 2.8 121 chr2L 5304606 intron vri + chr2L 5304666 intron vri + chr2L 5304727 intron vri + chr2L_7_5300001 chr2L_5300001 RAL-721 65 chr2L 5475155 5475163 chr2L 5475260 5475268 5 105 1.0 1.0 1.0 2.5 113 chr2L 5475155 intergenic not near genes chr2L 5475212 intergenic not near genes chr2L 5475268 intergenic not near genes chr2L_5_5475001 chr2L_5475001 RAL-721 66 chr2L 5585964 5585996 chr2L 5586067 5586097 6 101 1.0 0.0 0.5 4.0 133 chr2L 5585964 intergenic not near genes chr2L 5586030 intergenic not near genes chr2L 5586097 intergenic not near genes chr2L_6_5585001 chr2L_5585001 RAL-721 67 chr2L 5594318 5594353 chr2L 5594410 5594445 8 88 4.5 2.5 3.5 1.8 127 chr2L 5594318 intergenic not near genes chr2L 5594382 intergenic not near genes chr2L 5594445 intergenic not near genes chr2L_8_5590001 chr2L_5590001 RAL-721 68 chr2L 5666293 5666320 chr2L 5666381 5666410 4 89 1.5 1.5 1.5 1.6 117 chr2L 5666293 intron Hsp60C + chr2L 5666352 intron Hsp60C + chr2L 5666410 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-721 69 chr2L 5790030 5790054 chr2L 5790109 5790127 9 76 2.5 3.0 2.8 2.4 97 chr2L 5790030 intron CG9171 - chr2L 5790078 intron CG9171 - chr2L 5790127 intron CG9171 - chr2L_9_5790001 chr2L_5790001 RAL-721 70 chr2L 5819661 5819678 chr2L 5819748 5819763 5 87 2.5 5.5 4.0 1.0 102 chr2L 5819661 intergenic not near genes chr2L 5819712 intergenic not near genes chr2L 5819763 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-721 71 chr2L 5863396 5863415 chr2L 5863680 5863697 4 280 5.0 4.0 4.5 0.7 301 chr2L 5863396 intron rau - chr2L 5863546 intron rau - chr2L 5863697 intron rau - chr2L_4_5860001 chr2L_5860001 RAL-721 72 chr2L 5897597 5897627 chr2L 5897676 5897709 10 80 4.0 3.0 3.5 2.2 112 chr2L 5897597 intergenic not near genes chr2L 5897653 intergenic not near genes chr2L 5897709 intergenic not near genes chr2L_10_5895001 chr2L_5895001 RAL-721 73 chr2L 5942027 5942054 chr2L 5942119 5942136 7 86 2.5 5.0 3.8 1.5 109 chr2L 5942027 5` UTR CR45289 + chr2L 5942082 5` UTR CR45289 + chr2L 5942136 5` UTR CR45289 + chr2L_7_5940001 chr2L_5940001 RAL-721 74 chr2L 6007098 6007124 chr2L 6007173 6007199 4 74 1.0 0.0 0.5 2.7 101 chr2L 6007098 intergenic CG9098 -,Gal - chr2L 6007148 intergenic CG9098 -,Gal - chr2L 6007199 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-721 75 chr2L 6037036 6037064 chr2L 6037114 6037142 6 78 3.0 3.5 3.2 1.4 106 chr2L 6037036 3` UTR CG9117 - chr2L 6037089 3` UTR CG9117 - chr2L 6037142 exon CG9117 - chr2L_6_6035001 chr2L_6035001 RAL-721 76 chr2L 6185441 6185468 chr2L 6185519 6185546 6 75 3.5 2.0 2.8 1.6 105 chr2L 6185441 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-721 77 chr2L 6318735 6318763 chr2L 6318889 6318917 4 148 1.0 1.0 1.0 2.0 182 chr2L 6318735 intron Ddr + chr2L 6318826 intron Ddr + chr2L 6318917 intron Ddr + chr2L_4_6315001 chr2L_6315001 RAL-721 78 chr2L 6426862 6426884 chr2L 6445120 6445143 roo 8 18259 5.5 5.0 5.2 1.3 18281 chr2L 6426862 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-721 79 chr2L 6544370 6544383 chr2L 6544462 6544475 4 92 3.5 1.5 2.5 1.1 105 chr2L 6544370 intron eya - chr2L 6544422 intron eya - chr2L 6544475 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-721 80 chr2L 6626893 6626912 chr2L 6626978 6626996 7 85 5.5 4.5 5.0 1.2 103 chr2L 6626893 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6626996 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-721 81 chr2L 7019566 7019594 chr2L 7019642 7019660 6 73 1.0 2.5 1.8 2.1 94 chr2L 7019566 intron ade3 - chr2L 7019613 intron ade3 - chr2L 7019660 intron ade3 - chr2L_6_7015001 chr2L_7015001 RAL-721 82 chr2L 7325931 7325942 chr2L 7326016 7326026 5 85 2.0 0.5 1.2 2.3 95 chr2L 7325931 intergenic not near genes chr2L 7325978 intergenic not near genes chr2L 7326026 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-721 83 chr2L 7343323 7343358 chr2L 7350439 7350467 roo 10 7111 3.0 1.5 2.2 3.1 7144 chr2L 7343323 intron Wnt6 + chr2L 7346895 intron Wnt6 + chr2L 7350467 intron Wnt6 + chr2L_10_7345001 chr2L_7345001 RAL-721 84 chr2L 7360301 7360328 chr2L 7360425 7360432 6 117 1.0 3.0 2.0 2.0 131 chr2L 7360301 intergenic not near genes chr2L 7360366 intergenic not near genes chr2L 7360432 intergenic not near genes chr2L_6_7360001 chr2L_7360001 RAL-721 85 chr2L 7600925 7600952 chr2L 7602255 7602260 11 1328 9.5 10.0 9.8 1.0 1335 chr2L 7600925 intergenic not near genes chr2L 7601592 intergenic not near genes chr2L 7602260 intergenic not near genes chr2L_11_7600001 chr2L_7600001 RAL-721 86 chr2L 7600625 7600652 chr2L 7602373 7602406 4 1754 22.5 26.0 24.2 0.2 1781 chr2L 7600625 intergenic not near genes chr2L 7601516 intergenic not near genes chr2L 7602406 intergenic not near genes chr2L_4_7600001 chr2L_7600001 RAL-721 87 chr2L 7634417 7634442 chr2L 7634551 7634575 12 130 4.5 1.0 2.8 3.2 158 chr2L 7634417 intergenic not near genes chr2L 7634496 intergenic not near genes chr2L 7634575 intergenic not near genes chr2L_12_7630001 chr2L_7630001 RAL-721 88 chr2L 7867572 7867603 chr2L 7867666 7867667 6 89 1.0 1.0 1.0 3.0 95 chr2L 7867572 intron Proc - chr2L 7867620 intron Proc - chr2L 7867667 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-721 89 chr2L 8044099 8044103 chr2L 8044177 8044180 4 78 3.5 3.0 3.2 1.0 81 chr2L 8044099 intron CG7466 + chr2L 8044140 intron CG7466 + chr2L 8044180 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-721 90 chr2L 8044104 8044128 chr2L 8044175 8044207 6 76 1.0 3.0 2.0 2.0 103 chr2L 8044104 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-721 91 chr2L 8165120 8165132 chr2L 8165203 8165215 4 83 0.0 3.0 1.5 1.6 95 chr2L 8165120 intron Piezo + chr2L 8165168 intron Piezo + chr2L 8165215 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-721 92 chr2L 8167150 8167176 chr2L 8167241 8167267 7 89 1.5 5.5 3.5 1.6 117 chr2L 8167150 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167267 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-721 93 chr2L 8286312 8286329 chr2L 8286399 8286416 5 86 2.0 5.5 3.8 1.0 104 chr2L 8286312 intron Btk29A - chr2L 8286364 intron Btk29A - chr2L 8286416 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-721 94 chr2L 8300302 8300332 chr2L 8300416 8300429 6 100 21.0 17.5 19.2 0.3 127 chr2L 8300302 intron Btk29A - chr2L 8300366 intron Btk29A - chr2L 8300429 intron Btk29A - chr2L_6_8300001 chr2L_8300001 RAL-721 95 chr2L 8345105 8345122 chr2L 8345181 8345203 4 80 1.0 4.5 2.8 1.1 98 chr2L 8345105 intergenic CR45371 - chr2L 8345154 intergenic CR45371 - chr2L 8345203 intergenic CR45371 - chr2L_4_8345001 chr2L_8345001 RAL-721 96 chr2L 8418152 8418178 chr2L 8418251 8418276 6 98 1.5 3.0 2.2 1.9 124 chr2L 8418152 intron Akap200 + chr2L 8418214 intron Akap200 + chr2L 8418276 intron Akap200 + chr2L_6_8415001 chr2L_8415001 RAL-721 97 chr2L 8535071 8535094 chr2L 8535169 8535199 5 100 0.5 0.0 0.2 4.2 128 chr2L 8535071 intron CG17834 + chr2L 8535135 intron CG17834 + chr2L 8535199 intron CG17834 + chr2L_5_8535001 chr2L_8535001 RAL-721 98 chr2L 8723113 8723145 chr2L 8731490 8731522 Tirant 10 8376 0.0 4.0 2.0 3.3 8409 chr2L 8723113 intron raw - chr2L 8727318 intron raw - chr2L 8731522 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-721 99 chr2L 8815748 8815775 chr2L 8815829 8815855 10 79 3.0 3.0 3.0 2.5 107 chr2L 8815748 intergenic not near genes chr2L 8815802 intergenic not near genes chr2L 8815855 intergenic not near genes chr2L_10_8815001 chr2L_8815001 RAL-721 100 chr2L 8993217 8993244 chr2L 8993320 8993345 4 102 23.0 22.5 22.8 0.2 128 chr2L 8993217 exon CG9555 + chr2L 8993281 exon CG9555 + chr2L 8993345 3` UTR CG9555 + chr2L_4_8990001 chr2L_8990001 RAL-721 101 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133321 11.5 17.0 14.2 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-721 102 chr2L 9251145 9251179 chr2L 9251241 9251276 10 93 2.5 1.5 2.0 3.3 131 chr2L 9251145 intergenic aust -,borr - chr2L 9251210 intergenic aust -,borr - chr2L 9251276 intergenic borr -,aust - chr2L_10_9250001 chr2L_9250001 RAL-721 103 chr2L 9270743 9270757 chr2L 9270830 9270852 9 92 4.5 4.0 4.2 1.7 109 chr2L 9270743 intron Ggamma30A + chr2L 9270798 intron Ggamma30A + chr2L 9270852 intron Ggamma30A + chr2L_9_9270001 chr2L_9270001 RAL-721 104 chr2L 9297380 9297404 chr2L 9297457 9297481 8 77 4.0 3.5 3.8 1.7 101 chr2L 9297380 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297481 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-721 105 chr2L 9317548 9317562 chr2L 9317825 9317839 7 276 0.0 5.0 2.5 2.0 291 chr2L 9317548 intergenic not near genes chr2L 9317694 intergenic not near genes chr2L 9317839 intergenic not near genes chr2L_7_9315001 chr2L_9315001 RAL-721 106 chr2L 9703491 9703525 chr2L 9703573 9703606 5 78 2.5 1.0 1.8 1.8 115 chr2L 9703491 intron,exon pelo +,CG31710 - chr2L 9703548 intron,5` UTR pelo +,CG31710 - chr2L 9703606 intron,intron pelo +,CG31710 - chr2L_5_9700001 chr2L_9700001 RAL-721 107 chr2L 9730984 9731000 chr2L 9731059 9731083 5 81 1.0 0.5 0.8 2.8 99 chr2L 9730984 intron Nckx30C - chr2L 9731034 intron Nckx30C - chr2L 9731083 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-721 108 chr2L 9973734 9973751 chr2L 9980849 9980870 HMS-Beagle 9 7118 4.5 4.5 4.5 1.6 7136 chr2L 9973734 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980870 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-721 109 chr2L 9986361 9986383 chr2L 9986448 9986478 4 92 0.0 2.5 1.2 1.8 117 chr2L 9986361 intron bib + chr2L 9986420 intron bib + chr2L 9986478 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-721 110 chr2L 10009555 10009581 chr2L 10009706 10009731 6 146 2.0 2.5 2.2 1.9 176 chr2L 10009555 intron Trp1 + chr2L 10009643 intron Trp1 + chr2L 10009731 intron Trp1 + chr2L_6_10005001 chr2L_10005001 RAL-721 111 chr2L 10078124 10078153 chr2L 10078282 10078303 7 155 2.0 3.0 2.5 2.0 179 chr2L 10078124 intron CG44153 - chr2L 10078214 intron CG44153 - chr2L 10078303 intron CG44153 - chr2L_7_10075001 chr2L_10075001 RAL-721 112 chr2L 10105280 10105313 chr2L 10105356 10105370 5 67 1.5 1.5 1.5 2.0 90 chr2L 10105280 intron,intron CG44153 -,CG34109 + chr2L 10105325 intron,intron CG44153 -,CG34109 + chr2L 10105370 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-721 113 chr2L 10153201 10153233 chr2L 10153280 10153299 9 77 1.5 3.0 2.2 2.8 98 chr2L 10153201 intron,exon CG44153 -,CG4839 + chr2L 10153250 intron,intron CG44153 -,CG4839 + chr2L 10153299 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-721 114 chr2L 10515128 10515389 chr2L 10515207 10515480 10 86 1.0 5.5 3.2 2.4 352 chr2L 10515128 intron,intron CG45083 -,Fatp - chr2L 10515304 intron,intron CG45083 -,Fatp - chr2L 10515480 intron,intron CG45083 -,Fatp - chr2L_10_10515001 chr2L_10515001 RAL-721 115 chr2L 10538567 10538585 chr2L 10538740 10538758 5 172 4.0 1.5 2.8 1.3 191 chr2L 10538567 intergenic not near genes chr2L 10538662 intergenic not near genes chr2L 10538758 intergenic not near genes chr2L_5_10535001 chr2L_10535001 RAL-721 116 chr2L 10543393 10543425 chr2L 10543469 10543500 9 76 2.5 2.0 2.2 2.8 107 chr2L 10543393 3` UTR CR44618 - chr2L 10543446 3` UTR CR44618 - chr2L 10543500 3` UTR CR44618 - chr2L_9_10540001 chr2L_10540001 RAL-721 117 chr2L 10563910 10563944 chr2L 10564003 10564023 5 90 2.0 2.0 2.0 1.7 113 chr2L 10563910 intron Trim9 + chr2L 10563966 intron Trim9 + chr2L 10564023 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-721 118 chr2L 10580790 10580819 chr2L 10580871 10580899 7 80 2.5 1.0 1.8 2.5 109 chr2L 10580790 intron Trim9 + chr2L 10580844 intron Trim9 + chr2L 10580899 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-721 119 chr2L 10782267 10782282 chr2L 10782688 10782703 5 419 4.0 2.5 3.2 1.2 436 chr2L 10782267 intron CG31869 - chr2L 10782485 intron CG31869 - chr2L 10782703 intron CG31869 - chr2L_5_10780001 chr2L_10780001 RAL-721 120 chr2L 10836337 10836367 chr2L 10836418 10836445 7 80 0.5 0.5 0.5 4.7 108 chr2L 10836337 intron Nos - chr2L 10836391 intron Nos - chr2L 10836445 intron Nos - chr2L_7_10835001 chr2L_10835001 RAL-721 121 chr2L 10862859 10862878 chr2L 10864460 10864491 Rt1c 9 1606 1.5 7.5 4.5 1.6 1632 chr2L 10862859 3` UTR CR43807 - chr2L 10863675 intron CR43807 - chr2L 10864491 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-721 122 chr2L 10946951 10946977 chr2L 10956165 10956190 roo 10 9212 3.5 4.5 4.0 2.0 9239 chr2L 10946951 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_10_10950001 chr2L_10950001 RAL-721 123 chr2L 11178883 11178906 chr2L 11178966 11178988 4 83 0.5 2.5 1.5 1.6 105 chr2L 11178883 intron Ca-beta - chr2L 11178936 intron Ca-beta - chr2L 11178988 intron Ca-beta - chr2L_4_11175001 chr2L_11175001 RAL-721 124 chr2L 11182572 11182596 chr2L 11182656 11182661 5 80 1.0 3.0 2.0 1.7 89 chr2L 11182572 intron Ca-beta - chr2L 11182616 intron Ca-beta - chr2L 11182661 intron Ca-beta - chr2L_5_11180001 chr2L_11180001 RAL-721 125 chr2L 11364497 11364511 chr2L 11364569 11364579 7 73 0.5 5.0 2.8 1.8 82 chr2L 11364497 intron salr + chr2L 11364538 intron salr + chr2L 11364579 intron salr + chr2L_7_11360001 chr2L_11360001 RAL-721 126 chr2L 11458950 11458977 chr2L 11459066 11459087 5 115 1.0 2.5 1.8 1.8 137 chr2L 11458950 intergenic not near genes chr2L 11459018 intergenic not near genes chr2L 11459087 intergenic not near genes chr2L_5_11455001 chr2L_11455001 RAL-721 127 chr2L 11563635 11563670 chr2L 11568839 11568867 copia 10 5203 2.5 3.0 2.8 2.6 5232 chr2L 11563635 intergenic not near genes chr2L 11566251 intergenic not near genes chr2L 11568867 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-721 128 chr2L 11612665 11612697 chr2L 11612752 11612785 9 87 2.0 6.0 4.0 1.8 120 chr2L 11612665 intron kek2 + chr2L 11612725 intron kek2 + chr2L 11612785 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-721 129 chr2L 11614052 11614083 chr2L 11615545 11615574 hopper2 5 1487 1.0 1.5 1.2 2.3 1522 chr2L 11614052 intron kek2 + chr2L 11614813 intron kek2 + chr2L 11615574 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-721 130 chr2L 11713520 11713537 chr2L 11720979 11721005 blood 10 7466 1.5 1.5 1.5 4.0 7485 chr2L 11713520 intergenic not near genes chr2L 11717262 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-721 131 chr2L 11770598 11770626 chr2L 11770685 11770713 10 87 2.0 3.0 2.5 2.9 115 chr2L 11770598 intergenic not near genes chr2L 11770656 intergenic not near genes chr2L 11770713 intergenic not near genes chr2L_10_11770001 chr2L_11770001 RAL-721 132 chr2L 11834825 11834856 chr2L 11834903 11834935 4 78 0.5 0.0 0.2 3.3 110 chr2L 11834825 intron,exon Pde1c -,CG45012 + chr2L 11834880 intron Pde1c - chr2L 11834935 intron Pde1c - chr2L_4_11830001 chr2L_11830001 RAL-721 133 chr2L 12031387 12031407 chr2L 12031468 12031488 4 80 1.0 0.5 0.8 2.2 101 chr2L 12031387 intron dmGlut + chr2L 12031438 intron dmGlut + chr2L 12031488 intron dmGlut + chr2L_4_12030001 chr2L_12030001 RAL-721 134 chr2L 12067328 12067358 chr2L 12074380 12074409 297 5 7051 1.0 1.0 1.0 2.5 7081 chr2L 12067328 intergenic not near genes chr2L 12070868 intergenic not near genes chr2L 12074409 intergenic not near genes chr2L_5_12070001 chr2L_12070001 RAL-721 135 chr2L 12160308 12160339 chr2L 12160401 12160433 5 93 0.0 2.0 1.0 2.5 125 chr2L 12160308 intron CG31760 + chr2L 12160370 intron CG31760 + chr2L 12160433 intron CG31760 + chr2L_5_12160001 chr2L_12160001 RAL-721 136 chr2L 12192358 12192367 chr2L 12192483 12192492 4 125 0.0 1.5 0.8 2.2 134 chr2L 12192358 intron aret + chr2L 12192425 intron aret + chr2L 12192492 intron aret + chr2L_4_12190001 chr2L_12190001 RAL-721 137 chr2L 12305415 12305434 chr2L 12305502 12305522 7 86 1.5 4.0 2.8 1.8 107 chr2L 12305415 intron aret + chr2L 12305468 intron aret + chr2L 12305522 intron aret + chr2L_7_12305001 chr2L_12305001 RAL-721 138 chr2L 12529249 12529448 chr2L 12529380 12529524 6 84 0.0 0.5 0.2 5.0 275 chr2L 12529249 intron bun - chr2L 12529386 intron bun - chr2L 12529524 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-721 139 chr2L 12584366 12584392 chr2L 12584449 12584475 5 81 2.0 1.5 1.8 1.8 109 chr2L 12584366 intergenic not near genes chr2L 12584420 intergenic not near genes chr2L 12584475 intergenic not near genes chr2L_5_12580001 chr2L_12580001 RAL-721 140 chr2L 12682876 12682902 chr2L 12682955 12682979 13 77 3.5 3.0 3.2 3.1 103 chr2L 12682876 intron pdm2 + chr2L 12682928 intron pdm2 + chr2L 12682979 intron pdm2 + chr2L_13_12680001 chr2L_12680001 RAL-721 141 chr2L 12739183 12739202 chr2L 12743963 12743983 Doc 7 4780 3.0 5.0 4.0 1.4 4800 chr2L 12739183 exon MRP + chr2L 12741583 intron MRP + chr2L 12743983 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-721 142 chr2L 12751311 12751340 chr2L 12751394 12751423 11 83 1.5 5.0 3.2 2.6 112 chr2L 12751311 intergenic not near genes chr2L 12751367 intergenic not near genes chr2L 12751423 intergenic not near genes chr2L_11_12750001 chr2L_12750001 RAL-721 143 chr2L 12861693 12861730 chr2L 12863160 12863177 hobo 13 1459 1.5 3.0 2.2 4.1 1484 chr2L 12861693 intergenic not near genes chr2L 12862435 intergenic not near genes chr2L 12863177 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-721 144 chr2L 12933848 12933876 chr2L 12941315 12941340 blood 5 7464 3.0 2.0 2.5 1.4 7492 chr2L 12933848 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941340 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-721 145 chr2L 13152228 13152259 chr2L 13152305 13152334 16 76 3.5 2.5 3.0 4.0 106 chr2L 13152228 intergenic not near genes chr2L 13152281 intergenic not near genes chr2L 13152334 intergenic not near genes chr2L_16_13150001 chr2L_13150001 RAL-721 146 chr2L 13405646 13405677 chr2L 13410443 13410474 Doc 15 4795 4.0 0.5 2.2 4.7 4828 chr2L 13405646 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-721 147 chr2L 13468321 13468329 chr2L 13468393 13468416 4 83 4.0 4.5 4.2 0.8 95 chr2L 13468321 intron CG42784 + chr2L 13468368 intron CG42784 + chr2L 13468416 intron CG42784 + chr2L_4_13465001 chr2L_13465001 RAL-721 148 chr2L 13481450 13481476 chr2L 13482056 13482083 jockey 5 606 3.5 3.5 3.5 1.1 633 chr2L 13481450 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482083 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-721 149 chr2L 13622154 13622171 chr2L 13622237 13622270 8 88 1.5 1.5 1.5 3.2 116 chr2L 13622154 intron kuz + chr2L 13622212 intron kuz + chr2L 13622270 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-721 150 chr2L 13820006 13820033 chr2L 13820077 13820084 7 64 5.0 3.5 4.2 1.3 78 chr2L 13820006 intergenic Sos + chr2L 13820045 intergenic Sos + chr2L 13820084 intergenic Sos + chr2L_7_13820001 chr2L_13820001 RAL-721 151 chr2L 13853090 13853118 chr2L 13862240 13862268 roo 6 9150 1.0 1.0 1.0 3.0 9178 chr2L 13853090 intron CenG1A + chr2L 13857679 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-721 152 chr2L 13904506 13904517 chr2L 13904587 13904596 6 80 11.0 3.0 7.0 0.8 90 chr2L 13904506 intergenic Smg5 - chr2L 13904551 intergenic Smg5 - chr2L 13904596 intergenic Smg5 - chr2L_6_13900001 chr2L_13900001 RAL-721 153 chr2L 13904518 13904537 chr2L 13904585 13904608 4 75 4.5 4.0 4.2 0.8 90 chr2L 13904518 intergenic Smg5 - chr2L 13904563 intergenic Smg5 - chr2L 13904608 intergenic Smg5 - chr2L_4_13900001 chr2L_13900001 RAL-721 154 chr2L 13917741 13917748 chr2L 13917842 13917849 4 101 1.5 2.0 1.8 1.4 108 chr2L 13917741 intron Ance-3 + chr2L 13917795 intron Ance-3 + chr2L 13917849 intron Ance-3 + chr2L_4_13915001 chr2L_13915001 RAL-721 155 chr2L 13981523 13981552 chr2L 13981609 13981643 4 90 7.0 3.0 5.0 0.7 120 chr2L 13981523 exon NimC2 + chr2L 13981583 intron NimC2 + chr2L 13981643 intron NimC2 + chr2L_4_13980001 chr2L_13980001 RAL-721 156 chr2L 14017767 14017798 chr2L 14017857 14017890 8 91 1.0 2.0 1.5 3.2 123 chr2L 14017767 intron bgm + chr2L 14017828 intron bgm + chr2L 14017890 intron bgm + chr2L_8_14015001 chr2L_14015001 RAL-721 157 chr2L 14588389 14588406 chr2L 14588543 14588560 5 154 4.0 2.5 3.2 1.2 171 chr2L 14588389 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588560 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-721 158 chr2L 14642588 14642600 chr2L 14651734 14651762 roo 4 9158 2.0 4.0 3.0 1.0 9174 chr2L 14642588 intron osp - chr2L 14647175 intron osp - chr2L 14651762 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-721 159 chr2L 14803881 14803912 chr2L 14809083 14809115 copia 6 5200 2.0 4.5 3.2 1.4 5234 chr2L 14803881 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-721 160 chr2L 14933379 14933382 chr2L 14933457 14933460 4 78 3.5 2.5 3.0 1.0 81 chr2L 14933379 intron CG42313 - chr2L 14933420 intron CG42313 - chr2L 14933460 intron CG42313 - chr2L_4_14930001 chr2L_14930001 RAL-721 161 chr2L 14984389 14984393 chr2L 14991977 14991995 opus 5 7596 2.5 1.5 2.0 1.7 7606 chr2L 14984389 intron mol - chr2L 14988192 intron mol - chr2L 14991995 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-721 162 chr2L 15000854 15000879 chr2L 15000981 15001006 6 129 11.0 7.5 9.2 0.6 152 chr2L 15000854 intergenic not near genes chr2L 15000930 intergenic not near genes chr2L 15001006 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-721 163 chr2L 15003554 15003571 chr2L 15003638 15003641 5 78 3.0 6.5 4.8 0.9 87 chr2L 15003554 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003641 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-721 164 chr2L 15031577 15031587 chr2L 15031794 15031823 5 234 2.0 0.5 1.2 2.3 246 chr2L 15031577 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031700 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031823 intron GABA-B-R1 + chr2L_5_15030001 chr2L_15030001 RAL-721 165 chr2L 15053132 15053135 chr2L 15053201 15053212 4 75 0.0 3.5 1.8 1.4 80 chr2L 15053132 intron ck - chr2L 15053172 intron ck - chr2L 15053212 intron ck - chr2L_4_15050001 chr2L_15050001 RAL-721 166 chr2L 15108499 15108523 chr2L 15108642 15108660 4 141 0.0 0.5 0.2 3.3 161 chr2L 15108499 intergenic not near genes chr2L 15108580 intergenic not near genes chr2L 15108660 intergenic not near genes chr2L_4_15105001 chr2L_15105001 RAL-721 167 chr2L 15227694 15227726 chr2L 15227785 15227801 4 82 3.0 1.5 2.2 1.2 107 chr2L 15227694 intergenic not near genes chr2L 15227748 intergenic not near genes chr2L 15227801 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-721 168 chr2L 15240231 15240247 chr2L 15240341 15240358 5 110 1.5 0.5 1.0 2.5 127 chr2L 15240231 intron ZnT35C - chr2L 15240294 intron ZnT35C - chr2L 15240358 intron ZnT35C - chr2L_5_15240001 chr2L_15240001 RAL-721 169 chr2L 15283878 15283904 chr2L 15284170 15284196 10 291 1.5 2.5 2.0 3.3 318 chr2L 15283878 intergenic not near genes chr2L 15284037 intergenic not near genes chr2L 15284196 intergenic not near genes chr2L_10_15280001 chr2L_15280001 RAL-721 170 chr2L 15446058 15446076 chr2L 15453527 15453545 blood 7 7468 4.0 1.5 2.8 1.8 7487 chr2L 15446058 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453545 intergenic not near genes chr2L_7_15445001 chr2L_15445001 RAL-721 171 chr2L 15544381 15544407 chr2L 15544456 15544483 6 71 2.5 1.0 1.8 2.1 102 chr2L 15544381 intergenic not near genes chr2L 15544432 intergenic not near genes chr2L 15544483 intergenic not near genes chr2L_6_15540001 chr2L_15540001 RAL-721 172 chr2L 15586409 15586442 chr2L 15593461 15593494 297 5 7050 1.0 1.5 1.2 2.3 7085 chr2L 15586409 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593494 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-721 173 chr2L 15956027 15956059 chr2L 15957494 15957520 hobo 6 1465 2.0 2.5 2.2 1.9 1493 chr2L 15956027 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957520 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-721 174 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 17.0 17.0 17.0 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-721 175 chr2L 16098932 16098953 chr2L 16099006 16099041 5 81 1.5 1.5 1.5 2.0 109 chr2L 16098932 intergenic not near genes chr2L 16098986 intergenic not near genes chr2L 16099041 intergenic not near genes chr2L_5_16095001 chr2L_16095001 RAL-721 176 chr2L 16150708 16150724 chr2L 16150779 16150803 5 77 0.5 3.0 1.8 1.8 95 chr2L 16150708 intergenic not near genes chr2L 16150756 intergenic not near genes chr2L 16150803 intergenic not near genes chr2L_5_16150001 chr2L_16150001 RAL-721 177 chr2L 16153744 16153760 chr2L 16160812 16160828 297 4 7066 3.0 1.5 2.2 1.2 7084 chr2L 16153744 intergenic not near genes chr2L 16157286 intergenic not near genes chr2L 16160828 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-721 178 chr2L 16229504 16229512 chr2L 16229970 16229978 5 466 2.0 2.0 2.0 1.7 474 chr2L 16229504 intergenic not near genes chr2L 16229741 intergenic not near genes chr2L 16229978 intergenic not near genes chr2L_5_16225001 chr2L_16225001 RAL-721 179 chr2L 16505000 16505017 chr2L 16505109 16505127 4 108 0.0 4.5 2.2 1.2 127 chr2L 16505000 intron Tpr2 + chr2L 16505064 intron Tpr2 + chr2L 16505127 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-721 180 chr2L 16511962 16511994 chr2L 16519076 16519108 HMS-Beagle 4 7110 0.5 1.0 0.8 2.2 7146 chr2L 16511962 intron CG5953 - chr2L 16515535 intron CG5953 - chr2L 16519108 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-721 181 chr2L 16641413 16641443 chr2L 16641499 16641529 8 85 0.0 2.0 1.0 4.0 116 chr2L 16641413 intron CG42389 + chr2L 16641471 intron CG42389 + chr2L 16641529 intron CG42389 + chr2L_8_16640001 chr2L_16640001 RAL-721 182 chr2L 17000122 17000151 chr2L 17000244 17000273 6 120 1.0 2.0 1.5 2.4 151 chr2L 17000122 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000273 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-721 183 chr2L 15761208 15761209 chr2L 17030494 17030494 4 1269286 7.5 3.5 5.5 0.6 1269286 chr2L 15761208 intron Gli - chr2L 16395851 intergenic not near genes chr2L 17030494 intergenic not near genes chr2L_4_16395001 chr2L_16395001 RAL-721 184 chr2L 17053279 17053304 chr2L 17053689 17053713 7 409 2.0 2.0 2.0 2.3 434 chr2L 17053279 intergenic not near genes chr2L 17053496 intergenic not near genes chr2L 17053713 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-721 185 chr2L 17062759 17062792 chr2L 17062841 17062874 5 79 0.5 0.0 0.2 4.2 115 chr2L 17062759 intergenic not near genes chr2L 17062816 intergenic not near genes chr2L 17062874 intergenic not near genes chr2L_5_17060001 chr2L_17060001 RAL-721 186 chr2L 17103009 17103034 chr2L 17103097 17103122 5 84 2.0 2.0 2.0 1.7 113 chr2L 17103009 intergenic not near genes chr2L 17103066 intergenic not near genes chr2L 17103122 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-721 187 chr2L 17183431 17183464 chr2L 17183619 17183652 4 188 0.5 0.5 0.5 2.7 221 chr2L 17183431 exon CG31750 + chr2L 17183542 exon CG31750 + chr2L 17183652 exon CG31750 + chr2L_4_17180001 chr2L_17180001 RAL-721 188 chr2L 17184814 17184835 chr2L 17185112 17185133 4 298 3.0 1.5 2.2 1.2 319 chr2L 17184814 intergenic not near genes chr2L 17184974 intergenic not near genes chr2L 17185133 intergenic not near genes chr2L_4_17180001 chr2L_17180001 RAL-721 189 chr2L 17241965 17241979 chr2L 17242037 17242066 6 79 5.5 1.5 3.5 1.3 101 chr2L 17241965 intron beat-IIIc - chr2L 17242016 intron beat-IIIc - chr2L 17242066 intron beat-IIIc - chr2L_6_17240001 chr2L_17240001 RAL-721 190 chr2L 17244560 17244576 chr2L 17244673 17244707 6 123 0.5 2.0 1.2 2.7 147 chr2L 17244560 intron beat-IIIc - chr2L 17244634 intron beat-IIIc - chr2L 17244707 intron beat-IIIc - chr2L_6_17240001 chr2L_17240001 RAL-721 191 chr2L 17256347 17256359 chr2L 17256448 17256464 4 103 2.5 1.5 2.0 1.3 117 chr2L 17256347 intron beat-IIIc - chr2L 17256406 intron beat-IIIc - chr2L 17256464 intron beat-IIIc - chr2L_4_17255001 chr2L_17255001 RAL-721 192 chr2L 17273197 17273226 chr2L 17277975 17278008 F-element 12 4781 4.0 6.5 5.2 1.9 4811 chr2L 17273197 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278008 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-721 193 chr2L 17819924 17819956 chr2L 17825124 17825159 copia 10 5200 1.0 2.5 1.8 3.6 5235 chr2L 17819924 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825159 intron CadN2 - chr2L_10_17820001 chr2L_17820001 RAL-721 194 chr2L 17931402 17931411 chr2L 17931570 17931577 4 171 2.0 3.5 2.8 1.1 175 chr2L 17931402 intergenic not near genes chr2L 17931490 intergenic not near genes chr2L 17931577 intergenic not near genes chr2L_4_17930001 chr2L_17930001 RAL-721 195 chr2L 17951950 17951978 chr2L 17953417 17953445 hobo 4 1467 1.0 1.5 1.2 1.8 1495 chr2L 17951950 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-721 196 chr2L 18051880 18051907 chr2L 18061023 18061053 roo 10 9146 2.0 1.0 1.5 4.0 9173 chr2L 18051880 intron rdo + chr2L 18056466 intron rdo + chr2L 18061053 intron rdo + chr2L_10_18055001 chr2L_18055001 RAL-721 197 chr2L 18111242 18111262 chr2L 18111332 18111353 8 90 1.5 1.5 1.5 3.2 111 chr2L 18111242 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_8_18110001 chr2L_18110001 RAL-721 198 chr2L 18143483 18143498 chr2L 18143563 18143578 6 79 3.0 7.5 5.2 1.0 95 chr2L 18143483 intron Socs36E - chr2L 18143530 intron Socs36E - chr2L 18143578 intron Socs36E - chr2L_6_18140001 chr2L_18140001 RAL-721 199 chr2L 18274042 18274066 chr2L 18274128 18274152 4 84 2.0 1.0 1.5 1.6 110 chr2L 18274042 intron CG42750 - chr2L 18274097 intron CG42750 - chr2L 18274152 intron CG42750 - chr2L_4_18270001 chr2L_18270001 RAL-721 200 chr2L 18303996 18304006 chr2L 18304063 18304096 4 84 2.0 0.5 1.2 1.8 100 chr2L 18303996 intergenic not near genes chr2L 18304046 intergenic not near genes chr2L 18304096 intergenic not near genes chr2L_4_18300001 chr2L_18300001 RAL-721 201 chr2L 18408026 18408042 chr2L 18412808 18412826 Doc 4 4780 5.0 1.5 3.2 1.0 4800 chr2L 18408026 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412826 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-721 202 chr2L 18565574 18565602 chr2L 18566008 18566010 10 428 2.5 0.5 1.5 4.0 436 chr2L 18565574 intron Pde11 - chr2L 18565792 intron Pde11 - chr2L 18566010 intron Pde11 - chr2L_10_18565001 chr2L_18565001 RAL-721 203 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 17.5 12.0 14.8 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-721 204 chr2L 18812559 18812583 chr2L 18812822 18812846 5 263 2.0 1.0 1.5 2.0 287 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812846 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-721 205 chr2L 19070274 19070284 chr2L 19070367 19070377 7 92 6.0 2.0 4.0 1.4 103 chr2L 19070274 intergenic CG10702 - chr2L 19070326 intergenic CG10702 - chr2L 19070377 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-721 206 chr2L 19070285 19070299 chr2L 19070362 19070374 6 86 3.0 2.0 2.5 1.7 89 chr2L 19070285 intergenic CG10702 - chr2L 19070330 intergenic CG10702 - chr2L 19070374 intergenic not near genes chr2L_6_19070001 chr2L_19070001 RAL-721 207 chr2L 19267981 19268012 chr2L 19268056 19268090 7 76 2.5 3.0 2.8 1.8 109 chr2L 19267981 intergenic not near genes chr2L 19268036 intergenic not near genes chr2L 19268090 intergenic not near genes chr2L_7_19265001 chr2L_19265001 RAL-721 208 chr2L 19345023 19345046 chr2L 19357228 19357255 blood 4 12206 1.5 3.5 2.5 1.1 12232 chr2L 19345023 intron dnt - chr2L 19351139 intron dnt - chr2L 19357255 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-721 209 chr2L 19357546 19357569 chr2L 19357636 19357659 10 89 2.0 1.5 1.8 3.6 113 chr2L 19357546 intron dnt - chr2L 19357602 intron dnt - chr2L 19357659 intron dnt - chr2L_10_19355001 chr2L_19355001 RAL-721 210 chr2L 19407719 19407732 chr2L 19407916 19407929 5 197 1.5 2.5 2.0 1.7 210 chr2L 19407719 intron Pax - chr2L 19407824 intron Pax - chr2L 19407929 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-721 211 chr2L 19429684 19429710 chr2L 19432776 19432809 4 3099 28.5 24.0 26.2 0.1 3125 chr2L 19429684 exon CG13085 + chr2L 19431246 exon CG9987 + chr2L 19432809 5` UTR Rab9 + chr2L_4_19430001 chr2L_19430001 RAL-721 212 chr2L 19545106 19545133 chr2L 19546517 19546541 4 1409 19.5 12.0 15.8 0.2 1435 chr2L 19545106 intron ref(2)P + chr2L 19545824 exon CG10337 - chr2L 19546541 intron CG10337 - chr2L_4_19545001 chr2L_19545001 RAL-721 213 chr2L 19558527 19558546 chr2L 19558631 19558641 6 102 0.5 1.5 1.0 3.0 114 chr2L 19558527 intron Tep5 + chr2L 19558584 intron Tep5 + chr2L 19558641 intron Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-721 214 chr2L 19560005 19560034 chr2L 19560257 19560286 7 251 1.5 3.0 2.2 2.2 281 chr2L 19560005 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560286 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-721 215 chr2L 19560845 19560863 chr2L 19560925 19560943 8 80 3.0 1.0 2.0 2.7 98 chr2L 19560845 intron Tep5 + chr2L 19560894 exon Tep5 + chr2L 19560943 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-721 216 chr2L 19561343 19561366 chr2L 19561483 19561507 6 141 2.5 2.5 2.5 1.7 164 chr2L 19561343 exon Tep5 + chr2L 19561425 exon Tep5 + chr2L 19561507 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-721 217 chr2L 19620096 19620131 chr2L 19621084 19621088 jockey 9 984 2.0 5.0 3.5 2.0 992 chr2L 19620096 intron Lar + chr2L 19620592 intron Lar + chr2L 19621088 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-721 218 chr2L 19638538 19638572 chr2L 19638620 19638655 9 81 3.5 2.0 2.8 2.4 117 chr2L 19638538 intron Lar + chr2L 19638596 intron Lar + chr2L 19638655 intron Lar + chr2L_9_19635001 chr2L_19635001 RAL-721 219 chr2L 19703537 19703564 chr2L 19712673 19712700 roo 7 9134 1.0 1.5 1.2 3.2 9163 chr2L 19703537 intron Lar + chr2L 19708118 intron Lar + chr2L 19712700 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-721 220 chr2L 19737379 19737386 chr2L 19740824 19740837 1360 7 3455 3.5 5.5 4.5 1.3 3458 chr2L 19737379 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740837 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-721 221 chr2L 19741146 19741172 chr2L 19741371 19741397 7 224 4.0 4.5 4.2 1.3 251 chr2L 19741146 intergenic not near genes chr2L 19741272 intergenic not near genes chr2L 19741397 intergenic not near genes chr2L_7_19740001 chr2L_19740001 RAL-721 222 chr2L 19762806 19762838 chr2L 19763051 19763083 pogo 7 245 2.0 3.0 2.5 2.0 277 chr2L 19762806 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763083 intron fbp - chr2L_7_19760001 chr2L_19760001 RAL-721 223 chr2L 19980710 19980723 chr2L 19980776 19980803 5 78 3.0 4.5 3.8 1.0 93 chr2L 19980710 intron CG43861 - chr2L 19980756 intron CG43861 - chr2L 19980803 intron CG43861 - chr2L_5_19980001 chr2L_19980001 RAL-721 224 chr2L 20005872 20005900 chr2L 20010948 20010976 flea 4 5075 1.0 1.5 1.2 1.8 5104 chr2L 20005872 intron CG43861 - chr2L 20008424 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-721 225 chr2L 20041447 20041460 chr2L 20041532 20041545 5 82 4.5 4.0 4.2 1.0 98 chr2L 20041447 intron sNPF + chr2L 20041496 intron sNPF + chr2L 20041545 intron sNPF + chr2L_5_20040001 chr2L_20040001 RAL-721 226 chr2L 20143151 20143180 chr2L 20143238 20143267 10 82 5.5 1.5 3.5 2.2 116 chr2L 20143151 intergenic not near genes chr2L 20143209 intergenic not near genes chr2L 20143267 intergenic not near genes chr2L_10_20140001 chr2L_20140001 RAL-721 227 chr2L 20272113 20272143 chr2L 20282823 20282850 copia 5 10710 2.0 3.0 2.5 1.4 10737 chr2L 20272113 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-721 228 chr2L 20296515 20296526 chr2L 20296596 20296606 4 78 1.5 3.0 2.2 1.2 91 chr2L 20296515 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296606 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-721 229 chr2L 20372244 20372256 chr2L 20372474 20372497 pogo 4 238 1.5 5.0 3.2 1.0 253 chr2L 20372244 intergenic Ugt37a1 - chr2L 20372370 intergenic Ugt37a1 - chr2L 20372497 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-721 230 chr2L 20568090 20568126 chr2L 20568568 20568604 6 478 3.5 2.0 2.8 1.6 514 chr2L 20568090 intron CR45347 + chr2L 20568347 intron CR45347 + chr2L 20568604 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-721 231 chr2L 20568660 20568686 chr2L 20569050 20569071 X-element 6 387 1.5 0.5 1.0 3.0 411 chr2L 20568660 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-721 232 chr2L 20576219 20576247 chr2L 20583687 20583711 blood 12 7465 3.0 2.5 2.8 3.2 7492 chr2L 20576219 intergenic CR45347 + chr2L 20579965 intergenic not near genes chr2L 20583711 3` UTR CR44909 - chr2L_12_20575001 chr2L_20575001 RAL-721 233 chr2L 20755774 20755787 chr2L 20755850 20755868 9 79 1.5 3.0 2.2 2.8 94 chr2L 20755774 exon CG9323 - chr2L 20755821 exon CG9323 - chr2L 20755868 exon CG9323 - chr2L_9_20755001 chr2L_20755001 RAL-721 234 chr2L 20835814 20835831 chr2L 20836531 20836548 Quasimodo 5 717 2.0 1.0 1.5 2.0 734 chr2L 20835814 5` UTR Oseg5 - chr2L 20836181 intergenic Oseg5 -,Spn38F - chr2L 20836548 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 RAL-721 235 chr2L 20976561 20976581 chr2L 20981881 20981910 X-element 8 5320 3.0 1.0 2.0 2.7 5349 chr2L 20976561 intron CG42238 - chr2L 20979236 intron CG42238 - chr2L 20981910 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-721 236 chr2L 20984738 20984768 chr2L 20984830 20984860 8 88 4.5 2.5 3.5 1.8 122 chr2L 20984738 intron CG42238 - chr2L 20984799 intron CG42238 - chr2L 20984860 intron CG42238 - chr2L_8_20980001 chr2L_20980001 RAL-721 237 chr2L 20986912 20986927 chr2L 20987249 20987264 5 337 6.0 3.5 4.8 0.9 352 chr2L 20986912 intron CG42238 - chr2L 20987088 intron CG42238 - chr2L 20987264 intron CG42238 - chr2L_5_20985001 chr2L_20985001 RAL-721 238 chr2L 20991038 20991064 chr2L 20991115 20991142 13 77 4.5 1.5 3.0 3.2 104 chr2L 20991038 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991142 intron CG42238 - chr2L_13_20990001 chr2L_20990001 RAL-721 239 chr2L 21003557 21003587 chr2L 21003642 21003672 5 85 1.5 2.0 1.8 1.8 115 chr2L 21003557 intron CG42238 - chr2L 21003614 intron CG42238 - chr2L 21003672 intron CG42238 - chr2L_5_21000001 chr2L_21000001 RAL-721 240 chr2L 21020276 21020311 chr2L 21023951 21023984 NOF 8 3675 0.5 3.0 1.8 2.9 3708 chr2L 21020276 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-721 241 chr2L 21041143 21041163 chr2L 21049403 21049423 Tirant 5 8260 2.0 2.5 2.2 1.6 8280 chr2L 21041143 intron CG42238 - chr2L 21045283 intron CG42238 - chr2L 21049423 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-721 242 chr2L 21286611 21286631 chr2L 21286686 21286709 4 77 2.0 2.0 2.0 1.3 98 chr2L 21286611 exon Mio - chr2L 21286660 intron Mio - chr2L 21286709 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-721 243 chr2L 21355620 21355632 chr2L 21355750 21355766 4 138 0.5 1.0 0.8 2.2 146 chr2L 21355620 intron Tsp39D + chr2L 21355693 intron Tsp39D + chr2L 21355766 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-721 244 chr2L 21806223 21806260 chr2L 21806326 21806363 8 103 1.5 0.5 1.0 4.0 140 chr2L 21806223 intergenic not near genes chr2L 21806293 intergenic not near genes chr2L 21806363 intergenic not near genes chr2L_8_21805001 chr2L_21805001 RAL-721 245 chr2L 21838300 21838307 chr2L 21838485 21838497 4 188 6.5 1.5 4.0 0.8 197 chr2L 21838300 intergenic not near genes chr2L 21838398 intergenic not near genes chr2L 21838497 intergenic not near genes chr2L_4_21835001 chr2L_21835001 RAL-721 246 chr2L 21981683 21981710 chr2L 21990848 21990875 roo 6 9165 1.0 3.5 2.2 1.9 9192 chr2L 21981683 exon CG2528 - chr2L 21986279 intron CG2528 - chr2L 21990875 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-721 247 chr2L 22049244 22049265 chr2L 22049325 22049345 5 81 2.5 0.0 1.2 2.3 101 chr2L 22049244 intergenic not near genes chr2L 22049294 intergenic not near genes chr2L 22049345 intergenic not near genes chr2L_5_22045001 chr2L_22045001 RAL-721 248 chr2L 22548923 22548941 chr2L 22550144 22550163 1360 4 1223 0.0 1.5 0.8 2.2 1240 chr2L 22548923 intergenic CG17490 + chr2L 22549543 intergenic not near genes chr2L 22550163 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-721 249 chr2L 22941249 22941277 chr2L 22941331 22941359 8 81 0.5 3.5 2.0 2.7 110 chr2L 22941249 3` UTR lt + chr2L 22941304 3` UTR lt + chr2L 22941359 3` UTR lt + chr2L_8_22940001 chr2L_22940001 RAL-721 250 chr2L 23006508 23006535 chr2L 23007183 23007190 12 674 1.0 2.0 1.5 4.8 682 chr2L 23006508 intron Cht3 - chr2L 23006849 intron Cht3 - chr2L 23007190 intron Cht3 - chr2L_12_23005001 chr2L_23005001 RAL-721 251 chr2R 1082378 1082384 chr2R 1087126 1087160 Doc 5 4765 5.0 3.0 4.0 1.0 4782 chr2R 1082378 intron rl + chr2R 1084769 intron rl + chr2R 1087160 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-721 252 chr2R 2499006 2499015 chr2R 2508132 2508155 roo 4 9135 1.0 2.5 1.8 1.4 9149 chr2R 2499006 intron MFS17 - chr2R 2503580 intron MFS17 - chr2R 2508155 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-721 253 chr2R 4604556 4604580 chr2R 4604635 4604659 5 79 2.0 3.5 2.8 1.3 103 chr2R 4604556 intron p120ctn + chr2R 4604608 intron p120ctn + chr2R 4604659 intron p120ctn + chr2R_5_4600001 chr2R_4600001 RAL-721 254 chr2R 4622968 4622986 chr2R 4624127 4624145 1360 4 1159 3.0 4.5 3.8 0.8 1177 chr2R 4622968 intergenic CR44101 - chr2R 4623556 intergenic not near genes chr2R 4624145 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-721 255 chr2R 4624642 4624673 chr2R 4626546 4626578 Bica 10 1904 4.0 2.0 3.0 2.5 1936 chr2R 4624642 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626578 intergenic not near genes chr2R_10_4625001 chr2R_4625001 RAL-721 256 chr2R 4634158 4634167 chr2R 4634236 4634237 4 76 4.0 3.0 3.5 0.9 79 chr2R 4634158 intergenic not near genes chr2R 4634198 intergenic not near genes chr2R 4634237 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-721 257 chr2R 4634169 4634186 chr2R 4634235 4634244 8 70 2.0 3.0 2.5 2.3 75 chr2R 4634169 intergenic not near genes chr2R 4634206 intergenic not near genes chr2R 4634244 intergenic not near genes chr2R_8_4630001 chr2R_4630001 RAL-721 258 chr2R 5061555 5061558 chr2R 5600392 5600397 4 538841 3.0 2.0 2.5 1.1 538842 chr2R 5061555 intergenic not near genes chr2R 5330976 intergenic not near genes chr2R 5600397 intergenic not near genes chr2R_4_5330001 chr2R_5330001 RAL-721 259 chr2R 5209786 5209813 chr2R 5210319 5210346 4 530 0.0 2.0 1.0 2.0 560 chr2R 5209786 intron Nipped-A - chr2R 5210066 intron Nipped-A - chr2R 5210346 intron Nipped-A - chr2R_4_5210001 chr2R_5210001 RAL-721 260 chr2R 5303501 5303522 chr2R 5303589 5303607 6 85 12.0 7.0 9.5 0.6 106 chr2R 5303501 intergenic not near genes chr2R 5303554 intergenic not near genes chr2R 5303607 intergenic not near genes chr2R_6_5300001 chr2R_5300001 RAL-721 261 chr2R 5455777 5455792 chr2R 5455855 5455865 4 76 4.0 2.0 3.0 1.0 88 chr2R 5455777 3` UTR laccase2 + chr2R 5455821 3` UTR laccase2 + chr2R 5455865 3` UTR laccase2 + chr2R_4_5455001 chr2R_5455001 RAL-721 262 chr2R 5472389 5472393 chr2R 5472467 5472488 4 88 3.5 3.5 3.5 0.9 99 chr2R 5472389 intron CG30440 - chr2R 5472438 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-721 263 chr2R 5491733 5491748 chr2R 5491857 5491889 5 131 1.0 3.0 2.0 1.7 156 chr2R 5491733 intron CG30440 - chr2R 5491811 intron CG30440 - chr2R 5491889 intron CG30440 - chr2R_5_5490001 chr2R_5490001 RAL-721 264 chr2R 5509519 5509544 chr2R 5509615 5509637 8 93 0.5 2.0 1.2 3.6 118 chr2R 5509519 intron CG30438 + chr2R 5509578 intron CG30438 + chr2R 5509637 intron CG30438 + chr2R_8_5505001 chr2R_5505001 RAL-721 265 chr2R 5581401 5581409 chr2R 5627608 5627618 5 46209 0.0 5.5 2.8 1.3 46217 chr2R 5581401 intergenic not near genes chr2R 5604510 exon Fis1 - chr2R 5627618 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-721 266 chr2R 5772522 5772748 chr2R 5772600 5772861 7 98 0.5 3.0 1.8 2.5 339 chr2R 5772522 3` UTR Gp210 + chr2R 5772692 3` UTR Gp210 + chr2R 5772861 3` UTR Gp210 + chr2R_7_5770001 chr2R_5770001 RAL-721 267 chr2R 5799478 5799488 chr2R 5799608 5799633 5 141 1.5 3.0 2.2 1.6 155 chr2R 5799478 intergenic not near genes chr2R 5799556 intergenic not near genes chr2R 5799633 intergenic not near genes chr2R_5_5795001 chr2R_5795001 RAL-721 268 chr2R 5869290 5869305 chr2R 5874350 5874381 flea 10 5071 3.5 2.0 2.8 2.6 5091 chr2R 5869290 intergenic not near genes chr2R 5871836 intergenic not near genes chr2R 5874381 intergenic not near genes chr2R_10_5870001 chr2R_5870001 RAL-721 269 chr2R 5914160 5914164 chr2R 5914431 5914455 4 278 1.0 3.5 2.2 1.2 295 chr2R 5914160 intron CG43366 + chr2R 5914308 intron CG43366 + chr2R 5914455 intron CG43366 + chr2R_4_5910001 chr2R_5910001 RAL-721 270 chr2R 5948919 5948950 chr2R 5949449 5949480 4 530 4.0 3.0 3.5 0.9 561 chr2R 5948919 intergenic not near genes chr2R 5949200 intergenic not near genes chr2R 5949480 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-721 271 chr2R 5985633 5985662 chr2R 5985789 5985818 9 152 3.5 2.0 2.8 2.4 185 chr2R 5985633 intron Src42A + chr2R 5985726 intron Src42A + chr2R 5985818 intron Src42A + chr2R_9_5985001 chr2R_5985001 RAL-721 272 chr2R 6096718 6096744 chr2R 6101910 6101925 BS 5 5186 5.0 2.5 3.8 1.0 5207 chr2R 6096718 intron EcR - chr2R 6099322 intron EcR - chr2R 6101925 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-721 273 chr2R 6178678 6178709 chr2R 6178765 6178796 4 87 2.5 1.5 2.0 1.3 118 chr2R 6178678 intergenic not near genes chr2R 6178737 intergenic not near genes chr2R 6178796 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-721 274 chr2R 6494529 6494554 chr2R 6499291 6499316 F-element 7 4762 1.5 1.0 1.2 3.2 4787 chr2R 6494529 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499316 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-721 275 chr2R 6546722 6546752 chr2R 6546818 6546853 9 99 1.0 3.5 2.2 2.8 131 chr2R 6546722 intron jing + chr2R 6546788 intron jing + chr2R 6546853 intron jing + chr2R_9_6545001 chr2R_6545001 RAL-721 276 chr2R 6549341 6549366 chr2R 6549439 6549450 7 94 6.0 4.0 5.0 1.2 109 chr2R 6549341 intron jing + chr2R 6549396 intron jing + chr2R 6549450 intron jing + chr2R_7_6545001 chr2R_6545001 RAL-721 277 chr2R 6633208 6633230 chr2R 6633276 6633307 8 72 0.5 0.5 0.5 5.3 99 chr2R 6633208 intergenic Vha16-1 -,Trap1 - chr2R 6633258 intergenic Vha16-1 -,Trap1 - chr2R 6633307 intergenic Vha16-1 -,Trap1 - chr2R_8_6630001 chr2R_6630001 RAL-721 278 chr2R 6806799 6806813 chr2R 6806884 6806898 6 82 2.5 4.0 3.2 1.4 99 chr2R 6806799 intergenic not near genes chr2R 6806848 intergenic not near genes chr2R 6806898 intergenic not near genes chr2R_6_6805001 chr2R_6805001 RAL-721 279 chr2R 6876229 6876245 chr2R 6876311 6876326 4 82 1.0 3.5 2.2 1.2 97 chr2R 6876229 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876326 5` UTR,intron CR44169 +,Spn42Da - chr2R_4_6875001 chr2R_6875001 RAL-721 280 chr2R 6978860 6978887 chr2R 6979126 6979155 7 267 0.0 1.0 0.5 4.7 295 chr2R 6978860 intron vimar - chr2R 6979008 intron vimar - chr2R 6979155 intron vimar - chr2R_7_6975001 chr2R_6975001 RAL-721 281 chr2R 7135301 7135326 chr2R 7135386 7135389 9 81 4.0 1.0 2.5 2.6 88 chr2R 7135301 intergenic CR44443 + chr2R 7135345 intergenic CR44443 + chr2R 7135389 intergenic CR44443 + chr2R_9_7135001 chr2R_7135001 RAL-721 282 chr2R 7139948 7139955 chr2R 7141439 7141447 hopper2 6 1491 3.5 9.5 6.5 0.8 1499 chr2R 7139948 intergenic not near genes chr2R 7140698 intergenic not near genes chr2R 7141447 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-721 283 chr2R 7164273 7164278 chr2R 7164464 7164469 4 190 2.0 3.5 2.8 1.1 196 chr2R 7164273 intron pk + chr2R 7164371 intron pk + chr2R 7164469 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-721 284 chr2R 7352109 7352137 chr2R 7352182 7352213 14 74 3.5 5.0 4.2 2.7 104 chr2R 7352109 intron Dscam1 - chr2R 7352161 intron Dscam1 - chr2R 7352213 intron Dscam1 - chr2R_14_7350001 chr2R_7350001 RAL-721 285 chr2R 7434897 7434912 chr2R 7439197 7439213 Juan 5 4301 1.0 1.5 1.2 2.3 4316 chr2R 7434897 intergenic so + chr2R 7437055 intergenic not near genes chr2R 7439213 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-721 286 chr2R 7760292 7760302 chr2R 7760428 7760435 5 134 1.5 4.0 2.8 1.3 143 chr2R 7760292 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760435 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-721 287 chr2R 7815670 7815691 chr2R 7822139 7822160 Burdock 4 6469 3.5 2.5 3.0 1.0 6490 chr2R 7815670 intergenic CG1882 + chr2R 7818915 intergenic not near genes chr2R 7822160 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-721 288 chr2R 7869188 7869216 chr2R 7873974 7873982 Doc 8 4783 3.0 3.0 3.0 2.0 4794 chr2R 7869188 intron Dgk - chr2R 7871585 intron Dgk - chr2R 7873982 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-721 289 chr2R 7942256 7942282 chr2R 7942341 7942360 4 83 2.0 1.5 1.8 1.4 104 chr2R 7942256 3` UTR CG14764 - chr2R 7942308 3` UTR CG14764 - chr2R 7942360 3` UTR CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-721 290 chr2R 8036262 8036290 chr2R 8036339 8036372 6 77 2.0 3.5 2.8 1.6 110 chr2R 8036262 intron Optix + chr2R 8036317 intron Optix + chr2R 8036372 intron Optix + chr2R_6_8035001 chr2R_8035001 RAL-721 291 chr2R 8067064 8067098 chr2R 8067148 8067182 11 81 0.5 3.5 2.0 3.7 118 chr2R 8067064 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067182 exon CG17977 - chr2R_11_8065001 chr2R_8065001 RAL-721 292 chr2R 8076681 8076709 chr2R 8076761 8076788 8 76 5.0 1.5 3.2 1.9 107 chr2R 8076681 intron lig + chr2R 8076734 intron lig + chr2R 8076788 intron lig + chr2R_8_8075001 chr2R_8075001 RAL-721 293 chr2R 8089260 8089288 chr2R 8089346 8089373 7 84 0.5 0.0 0.2 5.8 113 chr2R 8089260 3` UTR sut2 + chr2R 8089316 intergenic sut2 +,sut3 + chr2R 8089373 intergenic sut2 +,sut3 + chr2R_7_8085001 chr2R_8085001 RAL-721 294 chr2R 8160937 8160943 chr2R 8161025 8161032 1360 4 89 4.0 6.5 5.2 0.6 95 chr2R 8160937 intron CG8708 - chr2R 8160984 intron CG8708 - chr2R 8161032 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-721 295 chr2R 8185635 8185661 chr2R 8185725 8185726 7 84 7.0 3.0 5.0 1.2 91 chr2R 8185635 intron LRP1 + chr2R 8185680 intron LRP1 + chr2R 8185726 intron LRP1 + chr2R_7_8185001 chr2R_8185001 RAL-721 296 chr2R 8403664 8403683 chr2R 8403837 8403858 4 176 1.0 3.0 2.0 1.3 194 chr2R 8403664 intron CG2121 - chr2R 8403761 intron CG2121 - chr2R 8403858 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-721 297 chr2R 8615784 8615809 chr2R 8615894 8615922 4 112 2.0 4.0 3.0 1.0 138 chr2R 8615784 intron Cirl + chr2R 8615853 intron Cirl + chr2R 8615922 5` UTR Cirl + chr2R_4_8615001 chr2R_8615001 RAL-721 298 chr2R 8722766 8722794 chr2R 8723006 8723016 pogo 12 236 3.0 3.0 3.0 3.0 250 chr2R 8722766 intron CG14767 - chr2R 8722891 intron CG14767 - chr2R 8723016 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-721 299 chr2R 8827760 8827788 chr2R 8827835 8827858 4 74 2.5 1.0 1.8 1.4 98 chr2R 8827760 intron sns + chr2R 8827809 intron sns + chr2R 8827858 intron sns + chr2R_4_8825001 chr2R_8825001 RAL-721 300 chr2R 9076136 9076162 chr2R 9076212 9076235 5 75 0.5 0.5 0.5 3.3 99 chr2R 9076136 intron ana + chr2R 9076186 intron ana + chr2R 9076235 intron ana + chr2R_5_9075001 chr2R_9075001 RAL-721 301 chr2R 9212692 9212722 chr2R 9213177 9213207 roo 10 483 4.0 4.5 4.2 1.9 515 chr2R 9212692 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_10_9210001 chr2R_9210001 RAL-721 302 chr2R 9227885 9227902 chr2R 9227960 9227989 5 84 1.0 0.0 0.5 3.3 104 chr2R 9227885 3` UTR hig - chr2R 9227937 3` UTR hig - chr2R 9227989 3` UTR hig - chr2R_5_9225001 chr2R_9225001 RAL-721 303 chr2R 9368132 9368150 chr2R 9368206 9368226 4 74 2.5 0.5 1.5 1.6 94 chr2R 9368132 intron CG13954 - chr2R 9368179 intron CG13954 - chr2R 9368226 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-721 304 chr2R 9510665 9510697 chr2R 9510780 9510813 6 116 0.0 3.0 1.5 2.4 148 chr2R 9510665 intron brp + chr2R 9510739 intron brp + chr2R 9510813 intron brp + chr2R_6_9510001 chr2R_9510001 RAL-721 305 chr2R 9699426 9699436 chr2R 9699494 9699508 6 77 8.0 2.0 5.0 1.0 82 chr2R 9699426 intergenic not near genes chr2R 9699467 intergenic not near genes chr2R 9699508 intergenic not near genes chr2R_6_9695001 chr2R_9695001 RAL-721 306 chr2R 9945435 9945454 chr2R 9945631 9945650 BS 9 195 4.0 1.0 2.5 2.6 215 chr2R 9945435 intron Mef2 - chr2R 9945542 intron Mef2 - chr2R 9945650 intron Mef2 - chr2R_9_9945001 chr2R_9945001 RAL-721 307 chr2R 10005846 10005881 chr2R 10007011 10007043 1360 16 1160 1.5 2.5 2.0 5.3 1197 chr2R 10005846 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007043 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-721 308 chr2R 10313315 10313349 chr2R 10313403 10313427 7 82 0.0 0.0 0.0 7.0 112 chr2R 10313315 intergenic not near genes chr2R 10313371 intergenic not near genes chr2R 10313427 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-721 309 chr2R 10352676 10352705 chr2R 10352753 10352773 12 76 1.0 2.0 1.5 4.8 97 chr2R 10352676 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352724 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352773 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_12_10350001 chr2R_10350001 RAL-721 310 chr2R 10372862 10372884 chr2R 10373184 10373211 8 328 0.5 0.5 0.5 5.3 349 chr2R 10372862 intron CG42732 - chr2R 10373036 intron CG42732 - chr2R 10373211 intron CG42732 - chr2R_8_10370001 chr2R_10370001 RAL-721 311 chr2R 10585573 10585580 chr2R 10594156 10594163 Tirant 4 8583 3.0 3.0 3.0 1.0 8590 chr2R 10585573 intron psq + chr2R 10589868 intron psq + chr2R 10594163 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-721 312 chr2R 10585584 10585589 chr2R 10594148 10594172 Tirant 4 8578 2.0 2.0 2.0 1.3 8588 chr2R 10585584 intron psq + chr2R 10589878 intron psq + chr2R 10594172 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-721 313 chr2R 10668969 10669001 chr2R 10669049 10669081 6 76 4.5 3.0 3.8 1.2 112 chr2R 10668969 intergenic not near genes chr2R 10669025 intergenic not near genes chr2R 10669081 intergenic not near genes chr2R_6_10665001 chr2R_10665001 RAL-721 314 chr2R 10770997 10771020 chr2R 10771076 10771099 4 80 3.0 1.5 2.2 1.2 102 chr2R 10770997 intron CG33144 - chr2R 10771048 intron CG33144 - chr2R 10771099 intron CG33144 - chr2R_4_10770001 chr2R_10770001 RAL-721 315 chr2R 10781400 10781425 chr2R 10781760 10781776 10 357 1.5 2.0 1.8 3.6 376 chr2R 10781400 intron CG33144 - chr2R 10781588 intron CG33144 - chr2R 10781776 intron CG33144 - chr2R_10_10780001 chr2R_10780001 RAL-721 316 chr2R 10800109 10800117 chr2R 10801591 10801597 4 1482 6.0 11.0 8.5 0.4 1488 chr2R 10800109 intergenic wde - chr2R 10800853 exon wde - chr2R 10801597 exon wde - chr2R_4_10800001 chr2R_10800001 RAL-721 317 chr2R 10875639 10875650 chr2R 10875750 10875760 1360 5 110 1.0 4.5 2.8 1.3 121 chr2R 10875639 intergenic nclb +,CG30016 - chr2R 10875700 intergenic nclb +,CG30016 - chr2R 10875760 5` UTR nclb + chr2R_5_10875001 chr2R_10875001 RAL-721 318 chr2R 10948041 10948061 chr2R 10955577 10955612 17.6 5 7542 1.0 3.5 2.2 1.6 7571 chr2R 10948041 intergenic not near genes chr2R 10951826 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-721 319 chr2R 11009828 11009844 chr2R 11018987 11019015 roo 4 9168 1.0 4.5 2.8 1.1 9187 chr2R 11009828 intron luna - chr2R 11014422 intron luna - chr2R 11019015 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-721 320 chr2R 11019877 11019909 chr2R 11024940 11024975 jockey 7 5062 2.5 1.0 1.8 2.5 5098 chr2R 11019877 intron luna - chr2R 11022426 intron luna - chr2R 11024975 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-721 321 chr2R 11111155 11111178 chr2R 11111244 11111267 10 88 1.0 0.0 0.5 6.7 112 chr2R 11111155 intron luna - chr2R 11111211 intron luna - chr2R 11111267 intron luna - chr2R_10_11110001 chr2R_11110001 RAL-721 322 chr2R 11194760 11194797 chr2R 11194868 11194905 6 107 3.0 3.0 3.0 1.5 145 chr2R 11194760 intron shn + chr2R 11194832 intron shn + chr2R 11194905 intron shn + chr2R_6_11190001 chr2R_11190001 RAL-721 323 chr2R 11207816 11207849 chr2R 11208008 11208034 BS 6 188 11.5 3.5 7.5 0.7 218 chr2R 11207816 intron shn + chr2R 11207925 intron shn + chr2R 11208034 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-721 324 chr2R 11231742 11231752 chr2R 11231836 11231848 4 95 7.0 7.0 7.0 0.5 106 chr2R 11231742 intron metro - chr2R 11231795 intron metro - chr2R 11231848 intron metro - chr2R_4_11230001 chr2R_11230001 RAL-721 325 chr2R 11231760 11231764 chr2R 11231828 11231836 6 82 4.5 4.0 4.2 1.2 76 chr2R 11231760 intron metro - chr2R 11231798 intron metro - chr2R 11231836 intron metro - chr2R_6_11230001 chr2R_11230001 RAL-721 326 chr2R 11324033 11324059 chr2R 11324114 11324140 5 81 1.5 1.5 1.5 2.0 107 chr2R 11324033 intergenic sha + chr2R 11324086 intergenic sha + chr2R 11324140 intergenic sha + chr2R_5_11320001 chr2R_11320001 RAL-721 327 chr2R 11415441 11415461 chr2R 11415514 11415515 4 68 1.5 0.0 0.8 2.2 74 chr2R 11415441 intron,3` UTR Drip -,CG7763 + chr2R 11415478 intron Drip - chr2R 11415515 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-721 328 chr2R 11415527 11415541 chr2R 11418675 11418690 opus 4 3148 0.5 5.0 2.8 1.1 3163 chr2R 11415527 intron Drip - chr2R 11417108 intron Drip - chr2R 11418690 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-721 329 chr2R 11421670 11421696 chr2R 11421750 11421775 5 80 2.0 0.0 1.0 2.5 105 chr2R 11421670 intron Drip - chr2R 11421722 intron Drip - chr2R 11421775 intron Drip - chr2R_5_11420001 chr2R_11420001 RAL-721 330 chr2R 11472649 11472675 chr2R 11473844 11473872 pogo 5 1197 0.5 1.5 1.0 2.5 1223 chr2R 11472649 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473872 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-721 331 chr2R 11574502 11574518 chr2R 11574579 11574593 5 75 6.0 6.5 6.2 0.7 91 chr2R 11574502 intergenic not near genes chr2R 11574548 intergenic not near genes chr2R 11574593 intergenic not near genes chr2R_5_11570001 chr2R_11570001 RAL-721 332 chr2R 11667394 11667399 chr2R 11667488 11667493 4 94 2.0 3.0 2.5 1.1 99 chr2R 11667394 intron,intron Roc2 -,Tret1-1 + chr2R 11667444 intron,intron Roc2 -,Tret1-1 + chr2R 11667493 intron,intron Roc2 -,Tret1-1 + chr2R_4_11665001 chr2R_11665001 RAL-721 333 chr2R 11835360 11835375 chr2R 11835576 11835591 7 215 3.5 1.5 2.5 2.0 231 chr2R 11835360 intron Sobp - chr2R 11835476 intron Sobp - chr2R 11835591 intron Sobp - chr2R_7_11835001 chr2R_11835001 RAL-721 334 chr2R 11934075 11934105 chr2R 11934157 11934185 7 82 1.5 1.0 1.2 3.2 110 chr2R 11934075 intergenic not near genes chr2R 11934130 intergenic not near genes chr2R 11934185 intergenic not near genes chr2R_7_11930001 chr2R_11930001 RAL-721 335 chr2R 11951073 11951090 chr2R 11953191 11953202 7 2117 14.0 16.5 15.2 0.4 2129 chr2R 11951073 intron CG13188 + chr2R 11952138 intron CG13188 + chr2R 11953202 intron CG13188 + chr2R_7_11950001 chr2R_11950001 RAL-721 336 chr2R 11951345 11951367 chr2R 11951421 11951444 7 74 2.5 1.0 1.8 2.5 99 chr2R 11951345 intron CG13188 + chr2R 11951394 intron CG13188 + chr2R 11951444 intron CG13188 + chr2R_7_11950001 chr2R_11950001 RAL-721 337 chr2R 11950667 11950685 chr2R 11953616 11953640 6 2949 12.0 13.5 12.8 0.4 2973 chr2R 11950667 intron CG13188 + chr2R 11952154 intron CG13188 + chr2R 11953640 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-721 338 chr2R 12145908 12145928 chr2R 12148601 12148636 5 2703 23.5 22.5 23.0 0.2 2728 chr2R 12145908 exon Hen1 + chr2R 12147272 intron,intron Hen1 +,CG8878 - chr2R 12148636 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-721 339 chr2R 12187476 12187508 chr2R 12190094 12190124 18 2621 76.0 50.0 63.0 0.3 2648 chr2R 12187476 exon Cyp6g1 + chr2R 12188800 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_18_12185001 chr2R_12185001 RAL-721 340 chr2R 12210155 12210165 chr2R 12210236 12210246 4 80 2.5 6.5 4.5 0.7 91 chr2R 12210155 intron Sr-CII - chr2R 12210200 intron Sr-CII - chr2R 12210246 intron Sr-CII - chr2R_4_12210001 chr2R_12210001 RAL-721 341 chr2R 12363386 12363417 chr2R 12363818 12363849 9 430 1.0 0.0 0.5 6.0 463 chr2R 12363386 intergenic CG30043 + chr2R 12363618 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-721 342 chr2R 12385344 12385378 chr2R 12385425 12385459 7 79 0.0 2.5 1.2 3.2 115 chr2R 12385344 intergenic not near genes chr2R 12385402 intergenic not near genes chr2R 12385459 intergenic not near genes chr2R_7_12385001 chr2R_12385001 RAL-721 343 chr2R 12481153 12481166 chr2R 12482941 12482946 roo 4 1794 1.0 4.5 2.8 1.1 1793 chr2R 12481153 exon Dh44-R2 + chr2R 12482050 intron Dh44-R2 + chr2R 12482946 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-721 344 chr2R 12501703 12501724 chr2R 12503849 12503884 Rt1c 4 2147 3.5 2.0 2.8 1.1 2181 chr2R 12501703 intron fdl - chr2R 12502794 intron fdl - chr2R 12503884 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-721 345 chr2R 12819457 12819478 chr2R 12824525 12824550 jockey 6 5071 2.0 3.0 2.5 1.7 5093 chr2R 12819457 intergenic not near genes chr2R 12822004 intergenic not near genes chr2R 12824550 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-721 346 chr2R 12892349 12892368 chr2R 12892425 12892444 6 74 2.5 2.5 2.5 1.7 95 chr2R 12892349 intron vg + chr2R 12892396 intron vg + chr2R 12892444 intron vg + chr2R_6_12890001 chr2R_12890001 RAL-721 347 chr2R 13136841 13136862 chr2R 13141638 13141660 Doc 7 4798 3.0 6.0 4.5 1.3 4819 chr2R 13136841 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141660 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-721 348 chr2R 13259247 13259280 chr2R 13259323 13259356 7 76 3.0 0.0 1.5 2.8 109 chr2R 13259247 intergenic not near genes chr2R 13259302 intergenic not near genes chr2R 13259356 intergenic not near genes chr2R_7_13255001 chr2R_13255001 RAL-721 349 chr2R 13287590 13287603 chr2R 13288126 13288145 9 546 3.0 3.0 3.0 2.2 555 chr2R 13287590 intron Dh31-R - chr2R 13287868 intron Dh31-R - chr2R 13288145 intron Dh31-R - chr2R_9_13285001 chr2R_13285001 RAL-721 350 chr2R 13434999 13435021 chr2R 13435067 13435093 8 76 2.5 1.5 2.0 2.7 94 chr2R 13434999 intron,3` UTR CG42321 -,Ser8 + chr2R 13435046 intron CG42321 - chr2R 13435093 intron CG42321 - chr2R_8_13435001 chr2R_13435001 RAL-721 351 chr2R 13449679 13449681 chr2R 13449756 13449758 4 77 0.0 0.0 0.0 4.0 79 chr2R 13449679 intron cnn - chr2R 13449718 intron cnn - chr2R 13449758 intron cnn - chr2R_4_13445001 chr2R_13445001 RAL-721 352 chr2R 13566263 13566286 chr2R 13566341 13566360 8 78 3.0 1.0 2.0 2.7 97 chr2R 13566263 intergenic not near genes chr2R 13566312 intergenic not near genes chr2R 13566360 intergenic not near genes chr2R_8_13565001 chr2R_13565001 RAL-721 353 chr2R 13635692 13635711 chr2R 13635791 13635810 5 97 0.0 4.5 2.2 1.6 118 chr2R 13635692 intron fas + chr2R 13635751 intron fas + chr2R 13635810 intron fas + chr2R_5_13635001 chr2R_13635001 RAL-721 354 chr2R 13768982 13769004 chr2R 13769080 13769103 8 99 2.0 4.0 3.0 2.0 121 chr2R 13768982 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769103 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-721 355 chr2R 13830328 13830350 chr2R 13830415 13830437 4 87 0.0 0.5 0.2 3.3 109 chr2R 13830328 intron CG6329 + chr2R 13830382 intron CG6329 + chr2R 13830437 intron CG6329 + chr2R_4_13830001 chr2R_13830001 RAL-721 356 chr2R 13905608 13905633 chr2R 13907590 13907597 Rt1a 7 1975 2.5 6.0 4.2 1.3 1989 chr2R 13905608 intron shot - chr2R 13906602 intron shot - chr2R 13907597 intron shot - chr2R_7_13905001 chr2R_13905001 RAL-721 357 chr2R 13925851 13925856 chr2R 13926027 13926032 5 176 6.5 3.0 4.8 0.9 181 chr2R 13925851 intron shot - chr2R 13925942 intron shot - chr2R 13926032 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-721 358 chr2R 13925861 13925866 chr2R 13926023 13926042 4 169 4.5 3.0 3.8 0.8 181 chr2R 13925861 intron shot - chr2R 13925952 intron shot - chr2R 13926042 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-721 359 chr2R 14052562 14052585 chr2R 14052663 14052687 6 101 0.5 0.0 0.2 5.0 125 chr2R 14052562 intron mam + chr2R 14052624 intron mam + chr2R 14052687 intron mam + chr2R_6_14050001 chr2R_14050001 RAL-721 360 chr2R 14130058 14130078 chr2R 14130224 14130243 4 166 2.0 2.5 2.2 1.2 185 chr2R 14130058 intron Prosap - chr2R 14130150 intron Prosap - chr2R 14130243 intron Prosap - chr2R_4_14130001 chr2R_14130001 RAL-721 361 chr2R 14266762 14266795 chr2R 14266836 14266837 8 69 1.0 5.0 3.0 2.0 75 chr2R 14266762 intron CG8547 - chr2R 14266800 intron CG8547 - chr2R 14266837 intron CG8547 - chr2R_8_14265001 chr2R_14265001 RAL-721 362 chr2R 14284008 14284024 chr2R 14284163 14284190 9 163 2.5 2.5 2.5 2.6 182 chr2R 14284008 intron Ih + chr2R 14284099 intron Ih + chr2R 14284190 intron Ih + chr2R_9_14280001 chr2R_14280001 RAL-721 363 chr2R 14318582 14318600 chr2R 14318667 14318684 5 84 0.0 0.0 0.0 5.0 102 chr2R 14318582 intron Shroom + chr2R 14318633 intron Shroom + chr2R 14318684 intron Shroom + chr2R_5_14315001 chr2R_14315001 RAL-721 364 chr2R 14392884 14392914 chr2R 14392967 14392998 6 79 3.5 0.0 1.8 2.1 114 chr2R 14392884 intergenic not near genes chr2R 14392941 intergenic not near genes chr2R 14392998 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-721 365 chr2R 14393865 14393896 chr2R 14393950 14393978 7 85 2.5 2.5 2.5 2.0 113 chr2R 14393865 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393978 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-721 366 chr2R 14426827 14426850 chr2R 14426918 14426939 4 90 3.0 2.0 2.5 1.1 112 chr2R 14426827 intergenic not near genes chr2R 14426883 intergenic phyl - chr2R 14426939 intergenic phyl - chr2R_4_14425001 chr2R_14425001 RAL-721 367 chr2R 14467303 14467325 chr2R 14476445 14476477 roo 5 9147 0.5 3.0 1.8 1.8 9174 chr2R 14467303 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476477 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-721 368 chr2R 14591907 14591924 chr2R 14592155 14592184 8 258 2.0 1.0 1.5 3.2 277 chr2R 14591907 intron CG12869 + chr2R 14592046 intron CG12869 + chr2R 14592184 intron CG12869 + chr2R_8_14590001 chr2R_14590001 RAL-721 369 chr2R 14712244 14712267 chr2R 14712364 14712391 8 121 1.0 2.0 1.5 3.2 147 chr2R 14712244 intron mspo - chr2R 14712318 intron mspo - chr2R 14712391 intron mspo - chr2R_8_14710001 chr2R_14710001 RAL-721 370 chr2R 14729959 14729978 chr2R 14730043 14730058 5 83 2.0 1.5 1.8 1.8 99 chr2R 14729959 intergenic not near genes chr2R 14730008 intergenic not near genes chr2R 14730058 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-721 371 chr2R 14873688 14873720 chr2R 14875206 14875234 5 1517 1.0 0.5 0.8 2.8 1546 chr2R 14873688 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874461 exon Cyp6a17 + chr2R 14875234 exon Cyp6a17 + chr2R_5_14870001 chr2R_14870001 RAL-721 372 chr2R 14889208 14889236 chr2R 14897816 14897842 Max-element 4 8607 1.0 0.0 0.5 2.7 8634 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893525 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-721 373 chr2R 14911700 14911723 chr2R 14911823 14911846 8 122 2.5 1.0 1.8 2.9 146 chr2R 14911700 intron CG10249 - chr2R 14911773 intron CG10249 - chr2R 14911846 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-721 374 chr2R 14999249 14999267 chr2R 14999361 14999394 4 124 3.0 1.0 2.0 1.3 145 chr2R 14999249 intergenic not near genes chr2R 14999322 intergenic not near genes chr2R 14999394 intergenic not near genes chr2R_4_14995001 chr2R_14995001 RAL-721 375 chr2R 15015455 15015487 chr2R 15022878 15022906 mdg1 9 7422 1.0 2.0 1.5 3.6 7451 chr2R 15015455 intron hbs + chr2R 15019180 intron hbs + chr2R 15022906 intron hbs + chr2R_9_15015001 chr2R_15015001 RAL-721 376 chr2R 15054748 15054770 chr2R 15054811 15054816 11 65 2.5 2.5 2.5 3.1 68 chr2R 15054748 intergenic not near genes chr2R 15054782 intergenic not near genes chr2R 15054816 intergenic not near genes chr2R_11_15050001 chr2R_15050001 RAL-721 377 chr2R 15084977 15085005 chr2R 15092026 15092054 297 5 7048 1.5 2.0 1.8 1.8 7077 chr2R 15084977 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092054 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-721 378 chr2R 15115061 15115091 chr2R 15115222 15115225 4 154 0.5 0.5 0.5 2.7 164 chr2R 15115061 intergenic chn + chr2R 15115143 intergenic chn + chr2R 15115225 intergenic chn + chr2R_4_15115001 chr2R_15115001 RAL-721 379 chr2R 15119316 15119349 chr2R 15127797 15127830 Tirant 7 8480 4.5 3.5 4.0 1.4 8514 chr2R 15119316 intron chn + chr2R 15123573 intron chn + chr2R 15127830 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-721 380 chr2R 15295708 15295739 chr2R 15295833 15295847 5 121 2.5 3.5 3.0 1.2 139 chr2R 15295708 intron Trpm - chr2R 15295778 intron Trpm - chr2R 15295847 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-721 381 chr2R 15387892 15387923 chr2R 15387976 15388007 6 80 5.0 3.5 4.2 1.2 115 chr2R 15387892 intergenic SRPK + chr2R 15387950 intergenic SRPK + chr2R 15388007 intergenic SRPK + chr2R_6_15385001 chr2R_15385001 RAL-721 382 chr2R 15443619 15443637 chr2R 15443768 15443788 6 149 2.5 4.5 3.5 1.3 169 chr2R 15443619 intron CG43729 + chr2R 15443704 intron CG43729 + chr2R 15443788 intron CG43729 + chr2R_6_15440001 chr2R_15440001 RAL-721 383 chr2R 15653909 15653939 chr2R 15653994 15654024 8 84 3.0 1.5 2.2 2.5 115 chr2R 15653909 intron CG42524 + chr2R 15653966 intron CG42524 + chr2R 15654024 intron CG42524 + chr2R_8_15650001 chr2R_15650001 RAL-721 384 chr2R 15700236 15700266 chr2R 15700351 15700377 10 108 1.0 2.0 1.5 4.0 141 chr2R 15700236 intron,5` UTR CG30080 -,CG42662 - chr2R 15700306 intron,5` UTR CG30080 -,CG42662 - chr2R 15700377 intron,5` UTR CG30080 -,CG42662 - chr2R_10_15700001 chr2R_15700001 RAL-721 385 chr2R 15898884 15898907 chr2R 15898978 15899005 5 97 1.5 0.5 1.0 2.5 121 chr2R 15898884 intron sli - chr2R 15898944 intron sli - chr2R 15899005 intron sli - chr2R_5_15895001 chr2R_15895001 RAL-721 386 chr2R 16076696 16076715 chr2R 16076836 16076845 6 140 1.5 1.0 1.2 2.7 149 chr2R 16076696 intergenic not near genes chr2R 16076770 intergenic not near genes chr2R 16076845 intergenic not near genes chr2R_6_16075001 chr2R_16075001 RAL-721 387 chr2R 16217779 16217794 chr2R 16217855 16217870 9 76 2.5 5.0 3.8 1.9 91 chr2R 16217779 intron mrj - chr2R 16217824 intron mrj - chr2R 16217870 intron mrj - chr2R_9_16215001 chr2R_16215001 RAL-721 388 chr2R 16503873 16503898 chr2R 16503963 16503977 6 88 2.0 3.0 2.5 1.7 104 chr2R 16503873 intron Sema-2a + chr2R 16503925 intron Sema-2a + chr2R 16503977 intron Sema-2a + chr2R_6_16500001 chr2R_16500001 RAL-721 389 chr2R 16623319 16623344 chr2R 16623421 16623429 6 96 4.0 0.0 2.0 2.0 110 chr2R 16623319 exon CG5065 + chr2R 16623374 3` UTR CG5065 + chr2R 16623429 3` UTR CG5065 + chr2R_6_16620001 chr2R_16620001 RAL-721 390 chr2R 16737141 16737164 chr2R 16737239 16737264 12 100 3.5 3.5 3.5 2.7 123 chr2R 16737141 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737264 exon CG43104 - chr2R_12_16735001 chr2R_16735001 RAL-721 391 chr2R 16983219 16983225 chr2R 16983331 16983344 6 116 2.5 0.5 1.5 2.4 125 chr2R 16983219 intron Cbp53E + chr2R 16983282 intron Cbp53E + chr2R 16983344 intron Cbp53E + chr2R_6_16980001 chr2R_16980001 RAL-721 392 chr2R 17147242 17147268 chr2R 17152273 17152299 jockey 5 5031 2.0 4.5 3.2 1.2 5057 chr2R 17147242 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152299 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-721 393 chr2R 17208876 17208901 chr2R 17208952 17208978 6 71 2.0 1.5 1.8 2.1 102 chr2R 17208876 intergenic not near genes chr2R 17208927 intergenic not near genes chr2R 17208978 intergenic not near genes chr2R_6_17205001 chr2R_17205001 RAL-721 394 chr2R 17236508 17236537 chr2R 17241712 17241741 copia 7 5204 2.5 3.5 3.0 1.8 5233 chr2R 17236508 intron mbl + chr2R 17239124 intron mbl + chr2R 17241741 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-721 395 chr2R 17459010 17459015 chr2R 17459094 17459099 6 85 6.0 2.5 4.2 1.2 89 chr2R 17459010 intron CG14478 + chr2R 17459054 intron CG14478 + chr2R 17459099 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-721 396 chr2R 17459173 17459204 chr2R 17459407 17459438 5 234 1.5 0.5 1.0 2.5 265 chr2R 17459173 intron CG14478 + chr2R 17459306 intron CG14478 + chr2R 17459438 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-721 397 chr2R 17478852 17478865 chr2R 17478927 17478936 5 74 0.5 5.0 2.8 1.3 84 chr2R 17478852 3` UTR,intron CG43110 -,veil + chr2R 17478894 3` UTR,intron CG43110 -,veil + chr2R 17478936 3` UTR,intron CG43110 -,veil + chr2R_5_17475001 chr2R_17475001 RAL-721 398 chr2R 17485919 17485926 chr2R 17490689 17490696 F-element 5 4770 0.0 0.5 0.2 4.2 4777 chr2R 17485919 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488308 intron NT5E-2 + chr2R 17490696 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-721 399 chr2R 17644013 17644018 chr2R 17644088 17644094 4 76 0.5 0.5 0.5 2.7 81 chr2R 17644013 intergenic not near genes chr2R 17644054 intergenic not near genes chr2R 17644094 intergenic not near genes chr2R_4_17640001 chr2R_17640001 RAL-721 400 chr2R 17784025 17784056 chr2R 17784266 17784293 pogo 11 238 4.0 2.5 3.2 2.6 268 chr2R 17784025 intergenic mir-31a - chr2R 17784159 intergenic mir-31a - chr2R 17784293 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-721 401 chr2R 17982927 17982953 chr2R 17983012 17983038 4 85 0.5 1.5 1.0 2.0 111 chr2R 17982927 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983038 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-721 402 chr2R 17991318 17991345 chr2R 17991404 17991431 17 83 3.5 4.5 4.0 3.4 113 chr2R 17991318 intron dpr13 - chr2R 17991374 intron dpr13 - chr2R 17991431 intron dpr13 - chr2R_17_17990001 chr2R_17990001 RAL-721 403 chr2R 18185804 18185812 chr2R 18185884 18185894 4 79 3.5 3.5 3.5 0.9 90 chr2R 18185804 intron CG33958 - chr2R 18185849 intron CG33958 - chr2R 18185894 intron CG33958 - chr2R_4_18185001 chr2R_18185001 RAL-721 404 chr2R 18259661 18259690 chr2R 18260044 18260065 5 379 2.0 1.5 1.8 1.8 404 chr2R 18259661 intergenic not near genes chr2R 18259863 intergenic not near genes chr2R 18260065 intergenic not near genes chr2R_5_18255001 chr2R_18255001 RAL-721 405 chr2R 18308283 18308319 chr2R 18308388 18308413 13 102 3.5 2.0 2.8 3.4 130 chr2R 18308283 intron sbb - chr2R 18308348 intron sbb - chr2R 18308413 intron sbb - chr2R_13_18305001 chr2R_18305001 RAL-721 406 chr2R 18358390 18358419 chr2R 18372602 18372621 roo 10 14211 2.0 1.5 1.8 3.6 14231 chr2R 18358390 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372621 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-721 407 chr2R 18408285 18408309 chr2R 18408406 18408430 7 121 4.0 7.5 5.8 1.0 145 chr2R 18408285 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408430 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-721 408 chr2R 18455829 18455859 chr2R 18456118 18456150 14 289 3.0 4.5 3.8 2.9 321 chr2R 18455829 intergenic not near genes chr2R 18455990 intergenic not near genes chr2R 18456150 intergenic CG30116 - chr2R_14_18455001 chr2R_18455001 RAL-721 409 chr2R 18528204 18528220 chr2R 18528277 18528297 4 71 2.0 2.5 2.2 1.2 93 chr2R 18528204 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528297 intron CG10924 + chr2R_4_18525001 chr2R_18525001 RAL-721 410 chr2R 18575818 18575822 chr2R 18581990 18582000 3S18 4 6179 4.5 3.5 4.0 0.8 6182 chr2R 18575818 intron GEFmeso - chr2R 18578909 intron GEFmeso - chr2R 18582000 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-721 411 chr2R 18590868 18590901 chr2R 18600020 18600052 roo 9 9151 1.0 2.0 1.5 3.6 9184 chr2R 18590868 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-721 412 chr2R 18646407 18646431 chr2R 18646552 18646575 5 145 1.5 2.5 2.0 1.7 168 chr2R 18646407 intron SP2637 - chr2R 18646491 intron SP2637 - chr2R 18646575 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-721 413 chr2R 18785920 18785949 chr2R 18785999 18786026 7 73 1.0 3.5 2.2 2.2 106 chr2R 18785920 intron CG15080 + chr2R 18785973 intron CG15080 + chr2R 18786026 intron CG15080 + chr2R_7_18785001 chr2R_18785001 RAL-721 414 chr2R 18880369 18880384 chr2R 18880453 18880469 5 85 3.5 4.0 3.8 1.0 100 chr2R 18880369 intron sano + chr2R 18880419 intron sano + chr2R 18880469 intron sano + chr2R_5_18880001 chr2R_18880001 RAL-721 415 chr2R 18892368 18892380 chr2R 18892547 18892574 6 191 1.0 0.5 0.8 3.3 206 chr2R 18892368 intron sano + chr2R 18892471 intron sano + chr2R 18892574 intron sano + chr2R_6_18890001 chr2R_18890001 RAL-721 416 chr2R 18953158 18953188 chr2R 18953245 18953275 4 87 3.5 0.0 1.8 1.4 117 chr2R 18953158 intron sano + chr2R 18953216 intron sano + chr2R 18953275 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-721 417 chr2R 18989034 18989313 chr2R 18989112 18989393 6 79 0.5 0.0 0.2 5.0 359 chr2R 18989034 intron tn + chr2R 18989214 intron tn + chr2R 18989393 intron tn + chr2R_6_18985001 chr2R_18985001 RAL-721 418 chr2R 18992027 18992045 chr2R 18992167 18992185 5 139 1.5 3.0 2.2 1.6 158 chr2R 18992027 intron tn + chr2R 18992106 intron tn + chr2R 18992185 intron tn + chr2R_5_18990001 chr2R_18990001 RAL-721 419 chr2R 19025318 19025334 chr2R 19025552 19025567 4 234 0.5 2.0 1.2 1.8 249 chr2R 19025318 intron 5-HT1B - chr2R 19025442 intron 5-HT1B - chr2R 19025567 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-721 420 chr2R 19040732 19040756 chr2R 19040812 19040836 7 80 0.5 1.0 0.8 3.9 104 chr2R 19040732 intergenic not near genes chr2R 19040784 intergenic not near genes chr2R 19040836 intergenic not near genes chr2R_7_19040001 chr2R_19040001 RAL-721 421 chr2R 19076391 19076408 chr2R 19076489 19076505 6 104 5.5 3.0 4.2 1.2 114 chr2R 19076391 intron 5-HT1A + chr2R 19076448 intron 5-HT1A + chr2R 19076505 intron 5-HT1A + chr2R_6_19075001 chr2R_19075001 RAL-721 422 chr2R 19626160 19626177 chr2R 19626241 19626259 6 80 4.0 1.0 2.5 1.7 99 chr2R 19626160 intron sm - chr2R 19626210 intron sm - chr2R 19626259 intron sm - chr2R_6_19625001 chr2R_19625001 RAL-721 423 chr2R 19626178 19626191 chr2R 19626240 19626251 6 70 2.5 1.0 1.8 2.1 73 chr2R 19626178 intron sm - chr2R 19626214 intron sm - chr2R 19626251 intron sm - chr2R_6_19625001 chr2R_19625001 RAL-721 424 chr2R 19776603 19776613 chr2R 19779918 19779936 jockey 4 3318 4.5 1.5 3.0 1.0 3333 chr2R 19776603 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779936 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-721 425 chr2R 19816094 19816107 chr2R 19816196 19816220 4 110 0.0 0.0 0.0 4.0 126 chr2R 19816094 3` UTR Obp56h + chr2R 19816157 3` UTR Obp56h + chr2R 19816220 intergenic Obp56h + chr2R_4_19815001 chr2R_19815001 RAL-721 426 chr2R 19821703 19821723 chr2R 19821780 19821803 4 78 1.0 0.0 0.5 2.7 100 chr2R 19821703 intergenic not near genes chr2R 19821753 intergenic not near genes chr2R 19821803 intergenic not near genes chr2R_4_19820001 chr2R_19820001 RAL-721 427 chr2R 19914843 19914866 chr2R 19922255 19922278 mdg1 4 7412 3.0 1.5 2.2 1.2 7435 chr2R 19914843 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922278 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-721 428 chr2R 19957442 19957463 chr2R 19962640 19962664 copia 5 5197 2.5 2.5 2.5 1.4 5222 chr2R 19957442 intergenic CG44623 + chr2R 19960053 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-721 429 chr2R 20151971 20151993 chr2R 20152056 20152077 7 84 2.0 4.5 3.2 1.7 106 chr2R 20151971 intergenic not near genes chr2R 20152024 intergenic not near genes chr2R 20152077 intergenic not near genes chr2R_7_20150001 chr2R_20150001 RAL-721 430 chr2R 20384027 20384049 chr2R 20384135 20384157 6 106 1.5 1.0 1.2 2.7 130 chr2R 20384027 intergenic not near genes chr2R 20384092 intergenic not near genes chr2R 20384157 intergenic not near genes chr2R_6_20380001 chr2R_20380001 RAL-721 431 chr2R 20523041 20523068 chr2R 20523149 20523179 8 109 1.0 4.5 2.8 2.1 138 chr2R 20523041 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523179 intergenic not near genes chr2R_8_20520001 chr2R_20520001 RAL-721 432 chr2R 20541986 20542015 chr2R 20542064 20542092 4 76 2.0 0.5 1.2 1.8 106 chr2R 20541986 intergenic not near genes chr2R 20542039 intergenic not near genes chr2R 20542092 intergenic not near genes chr2R_4_20540001 chr2R_20540001 RAL-721 433 chr2R 20739440 20739467 chr2R 20744208 20744235 F-element 4 4768 4.0 1.5 2.8 1.1 4795 chr2R 20739440 intron dpr + chr2R 20741838 intron dpr + chr2R 20744235 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-721 434 chr2R 20783311 20783327 chr2R 20788083 20788098 F-element 4 4772 2.0 4.0 3.0 1.0 4787 chr2R 20783311 intergenic not near genes chr2R 20785704 intergenic not near genes chr2R 20788098 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-721 435 chr2R 20808669 20808694 chr2R 20808756 20808756 5 78 1.5 3.0 2.2 1.6 87 chr2R 20808669 intergenic not near genes chr2R 20808712 intergenic not near genes chr2R 20808756 intergenic not near genes chr2R_5_20805001 chr2R_20805001 RAL-721 436 chr2R 20830534 20830569 chr2R 20830614 20830649 13 78 2.0 1.0 1.5 5.2 115 chr2R 20830534 intron,intron insc -,sktl - chr2R 20830592 intron,intron insc -,sktl - chr2R 20830649 intron,intron insc -,sktl - chr2R_13_20830001 chr2R_20830001 RAL-721 437 chr2R 20967509 20967529 chr2R 20967619 20967632 5 109 2.0 2.0 2.0 1.7 123 chr2R 20967509 intergenic not near genes chr2R 20967570 intergenic not near genes chr2R 20967632 intergenic not near genes chr2R_5_20965001 chr2R_20965001 RAL-721 438 chr2R 20970392 20970410 chr2R 20970506 20970525 6 113 4.5 1.0 2.8 1.6 133 chr2R 20970392 intergenic not near genes chr2R 20970458 intergenic not near genes chr2R 20970525 intergenic not near genes chr2R_6_20970001 chr2R_20970001 RAL-721 439 chr2R 21121269 21121293 chr2R 21121360 21121385 8 92 3.5 4.5 4.0 1.6 116 chr2R 21121269 intron ktub + chr2R 21121327 intron ktub + chr2R 21121385 intron ktub + chr2R_8_21120001 chr2R_21120001 RAL-721 440 chr2R 21344442 21344467 chr2R 21344527 21344553 5 86 2.5 2.5 2.5 1.4 111 chr2R 21344442 exon CG15666 + chr2R 21344498 intron CG15666 + chr2R 21344553 intron CG15666 + chr2R_5_21340001 chr2R_21340001 RAL-721 441 chr2R 21450781 21450809 chr2R 21450867 21450895 8 86 1.0 4.5 2.8 2.1 114 chr2R 21450781 intron Sdc - chr2R 21450838 intron Sdc - chr2R 21450895 intron Sdc - chr2R_8_21450001 chr2R_21450001 RAL-721 442 chr2R 21467527 21467545 chr2R 21467614 21467632 5 87 5.0 1.0 3.0 1.2 105 chr2R 21467527 intron Sdc - chr2R 21467580 intron Sdc - chr2R 21467632 intron Sdc - chr2R_5_21465001 chr2R_21465001 RAL-721 443 chr2R 21700158 21700183 chr2R 21700244 21700269 9 85 2.0 4.0 3.0 2.2 111 chr2R 21700158 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700269 intron HmgZ - chr2R_9_21700001 chr2R_21700001 RAL-721 444 chr2R 21749104 21749124 chr2R 21749182 21749208 8 79 4.5 4.0 4.2 1.5 104 chr2R 21749104 intergenic not near genes chr2R 21749156 intergenic not near genes chr2R 21749208 intergenic not near genes chr2R_8_21745001 chr2R_21745001 RAL-721 445 chr2R 21753095 21753116 chr2R 21753569 21753600 roo 7 475 2.5 1.5 2.0 2.3 505 chr2R 21753095 intergenic not near genes chr2R 21753348 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-721 446 chr2R 22053450 22053467 chr2R 22053546 22053560 6 94 4.5 0.0 2.2 1.9 110 chr2R 22053450 intergenic not near genes chr2R 22053505 intergenic not near genes chr2R 22053560 intergenic not near genes chr2R_6_22050001 chr2R_22050001 RAL-721 447 chr2R 22178774 22178777 chr2R 22178860 22178863 4 85 0.0 4.0 2.0 1.3 89 chr2R 22178774 intron CG11170 - chr2R 22178818 intron CG11170 - chr2R 22178863 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-721 448 chr2R 22292074 22292107 chr2R 22292160 22292190 20 84 2.5 2.0 2.2 6.2 116 chr2R 22292074 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292190 5` UTR CR43422 + chr2R_20_22290001 chr2R_22290001 RAL-721 449 chr2R 22349693 22349724 chr2R 22351473 22351494 jockey 4 1780 4.0 1.5 2.8 1.1 1801 chr2R 22349693 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351494 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-721 450 chr2R 22377803 22377831 chr2R 22377889 22377900 8 83 3.5 1.5 2.5 2.3 97 chr2R 22377803 3` UTR Rtf1 + chr2R 22377852 3` UTR Rtf1 + chr2R 22377900 3` UTR Rtf1 + chr2R_8_22375001 chr2R_22375001 RAL-721 451 chr2R 22438886 22438891 chr2R 22438960 22438982 4 87 3.0 4.0 3.5 0.9 96 chr2R 22438886 intergenic not near genes chr2R 22438934 intergenic not near genes chr2R 22438982 intergenic not near genes chr2R_4_22435001 chr2R_22435001 RAL-721 452 chr2R 22438894 22438900 chr2R 22438958 22438994 4 86 3.0 3.5 3.2 1.0 100 chr2R 22438894 intergenic not near genes chr2R 22438944 intergenic not near genes chr2R 22438994 intergenic not near genes chr2R_4_22435001 chr2R_22435001 RAL-721 453 chr2R 22525746 22525772 chr2R 22529300 22529327 jockey 6 3554 3.0 1.0 2.0 2.0 3581 chr2R 22525746 intron px - chr2R 22527536 intron px - chr2R 22529327 intron px - chr2R_6_22525001 chr2R_22525001 RAL-721 454 chr2R 22574178 22574185 chr2R 22574258 22574264 4 80 1.0 3.0 2.0 1.3 86 chr2R 22574178 intron dnr1 - chr2R 22574221 intron dnr1 - chr2R 22574264 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-721 455 chr2R 22626939 22626959 chr2R 22627016 22627033 5 76 0.0 2.0 1.0 2.5 94 chr2R 22626939 intron CG33143 + chr2R 22626986 intron CG33143 + chr2R 22627033 intron CG33143 + chr2R_5_22625001 chr2R_22625001 RAL-721 456 chr2R 22723238 22723259 chr2R 22723314 22723334 5 76 0.0 2.5 1.2 2.3 96 chr2R 22723238 intron jbug - chr2R 22723286 intron jbug - chr2R 22723334 intron jbug - chr2R_5_22720001 chr2R_22720001 RAL-721 457 chr2R 22767566 22767599 chr2R 22767651 22767684 12 84 5.0 3.0 4.0 2.4 118 chr2R 22767566 intron CG42260 - chr2R 22767625 intron CG42260 - chr2R 22767684 intron CG42260 - chr2R_12_22765001 chr2R_22765001 RAL-721 458 chr2R 22774967 22774997 chr2R 22775386 22775415 jockey 7 417 2.5 2.0 2.2 2.2 448 chr2R 22774967 intron CG42260 - chr2R 22775191 intron CG42260 - chr2R 22775415 intron CG42260 - chr2R_7_22775001 chr2R_22775001 RAL-721 459 chr2R 22781959 22781989 chr2R 22782146 22782176 4 182 2.0 2.5 2.2 1.2 217 chr2R 22781959 intron CG42260 - chr2R 22782068 intron CG42260 - chr2R 22782176 intron CG42260 - chr2R_4_22780001 chr2R_22780001 RAL-721 460 chr2R 22834902 22834921 chr2R 22837679 22837681 4 2772 5.0 18.5 11.8 0.3 2779 chr2R 22834902 intron CG12490 + chr2R 22836292 intron CG12490 + chr2R 22837681 intron CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-721 461 chr2R 23061753 23061762 chr2R 23061869 23061876 4 115 0.5 4.0 2.2 1.2 123 chr2R 23061753 3` UTR l(2)06496 - chr2R 23061814 3` UTR l(2)06496 - chr2R 23061876 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-721 462 chr2R 23175042 23175066 chr2R 23175119 23175143 9 76 2.5 2.5 2.5 2.6 101 chr2R 23175042 intron CG34371 - chr2R 23175092 intron CG34371 - chr2R 23175143 intron CG34371 - chr2R_9_23175001 chr2R_23175001 RAL-721 463 chr2R 23188560 23188588 chr2R 23188638 23188666 4 78 0.0 2.5 1.2 1.8 106 chr2R 23188560 intron CG34371 - chr2R 23188613 intron CG34371 - chr2R 23188666 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-721 464 chr2R 23236823 23236993 chr2R 23236915 23237085 12 90 0.0 0.0 0.0 12.0 262 chr2R 23236823 intergenic not near genes chr2R 23236954 intergenic not near genes chr2R 23237085 intergenic not near genes chr2R_12_23235001 chr2R_23235001 RAL-721 465 chr2R 23409793 23409818 chr2R 23409881 23409912 5 88 2.0 3.5 2.8 1.3 119 chr2R 23409793 intergenic not near genes chr2R 23409852 intergenic not near genes chr2R 23409912 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-721 466 chr2R 23423739 23423768 chr2R 23423896 23423925 5 158 1.0 1.5 1.2 2.3 186 chr2R 23423739 intron CG9815 - chr2R 23423832 intron CG9815 - chr2R 23423925 intron CG9815 - chr2R_5_23420001 chr2R_23420001 RAL-721 467 chr2R 23470284 23470304 chr2R 23470358 23470385 8 80 6.5 2.5 4.5 1.5 101 chr2R 23470284 intron,3` UTR CG43795 +,Or59b - chr2R 23470334 intron,3` UTR CG43795 +,Or59b - chr2R 23470385 intron,3` UTR CG43795 +,Or59b - chr2R_8_23470001 chr2R_23470001 RAL-721 468 chr2R 23563900 23563918 chr2R 23563972 23563997 4 77 3.5 1.0 2.2 1.2 97 chr2R 23563900 3` UTR Pi3K59F + chr2R 23563948 3` UTR Pi3K59F + chr2R 23563997 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_4_23560001 chr2R_23560001 RAL-721 469 chr2R 23914314 23914332 chr2R 23921925 23921937 412 6 7618 1.5 5.5 3.5 1.3 7623 chr2R 23914314 exon kcc + chr2R 23918126 intron kcc + chr2R 23921937 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-721 470 chr2R 23986514 23986548 chr2R 23986594 23986628 10 80 1.5 3.0 2.2 3.1 114 chr2R 23986514 intron Phm - chr2R 23986571 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_10_23985001 chr2R_23985001 RAL-721 471 chr2R 24147067 24147098 chr2R 24154645 24154676 412 10 7571 2.5 3.5 3.0 2.5 7609 chr2R 24147067 intron Dat + chr2R 24150872 intron Dat + chr2R 24154676 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-721 472 chr2R 24204564 24204591 chr2R 24204646 24204673 5 82 0.5 1.5 1.0 2.5 109 chr2R 24204564 intron CG11406 - chr2R 24204618 intron CG11406 - chr2R 24204673 intron CG11406 - chr2R_5_24200001 chr2R_24200001 RAL-721 473 chr2R 24353434 24353448 chr2R 24361791 24361810 roo 5 8359 2.5 3.0 2.8 1.3 8376 chr2R 24353434 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361810 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-721 474 chr2R 24383827 24383858 chr2R 24383907 24383929 6 79 2.0 2.5 2.2 1.9 102 chr2R 24383827 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383929 exon mAChR-A - chr2R_6_24380001 chr2R_24380001 RAL-721 475 chr2R 24483648 24483674 chr2R 24483718 24483754 11 75 2.5 1.0 1.8 3.9 106 chr2R 24483648 intron CG13579 + chr2R 24483701 intron CG13579 + chr2R 24483754 intron CG13579 + chr2R_11_24480001 chr2R_24480001 RAL-721 476 chr2R 24590110 24590144 chr2R 24590202 24590226 10 87 1.0 2.5 1.8 3.6 116 chr2R 24590110 intron pio + chr2R 24590168 intron pio + chr2R 24590226 intron pio + chr2R_10_24590001 chr2R_24590001 RAL-721 477 chr2R 24647605 24647611 chr2R 24655160 24655168 412 6 7556 0.0 1.5 0.8 3.3 7563 chr2R 24647605 intergenic not near genes chr2R 24651386 intergenic not near genes chr2R 24655168 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-721 478 chr2R 24727888 24727915 chr2R 24735392 24735405 mdg1 7 7504 0.5 3.0 1.8 2.5 7517 chr2R 24727888 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735405 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-721 479 chr2R 24763612 24763637 chr2R 24765588 24765613 G2 10 1975 3.5 1.5 2.5 2.9 2001 chr2R 24763612 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-721 480 chr2R 24884050 24884065 chr2R 24884132 24884142 5 81 1.5 1.0 1.2 2.3 92 chr2R 24884050 intron NKAIN + chr2R 24884096 intron NKAIN + chr2R 24884142 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-721 481 chr2R 24955373 24955408 chr2R 24955472 24955508 12 93 2.5 2.5 2.5 3.4 135 chr2R 24955373 3` UTR CG12851 + chr2R 24955440 3` UTR CG12851 + chr2R 24955508 3` UTR CG12851 + chr2R_12_24955001 chr2R_24955001 RAL-721 482 chr2R 25004896 25004922 chr2R 25004970 25005000 7 73 1.0 1.0 1.0 3.5 104 chr2R 25004896 intron zip - chr2R 25004948 intron zip - chr2R 25005000 intron zip - chr2R_7_25000001 chr2R_25000001 RAL-721 483 chr2R 25014552 25014573 chr2R 25014621 25014647 8 72 0.0 3.0 1.5 3.2 95 chr2R 25014552 intron uzip + chr2R 25014600 intron uzip + chr2R 25014647 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-721 484 chr2R 25018342 25018364 chr2R 25018440 25018465 5 100 4.5 1.5 3.0 1.2 123 chr2R 25018342 intron uzip + chr2R 25018404 intron uzip + chr2R 25018465 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-721 485 chr2R 25022641 25022669 chr2R 25022725 25022753 4 84 1.0 1.5 1.2 1.8 112 chr2R 25022641 intron uzip + chr2R 25022697 intron uzip + chr2R 25022753 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-721 486 chr2R 25101278 25101309 chr2R 25101380 25101411 5 102 1.5 2.5 2.0 1.7 133 chr2R 25101278 intron lov - chr2R 25101344 intron lov - chr2R 25101411 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-721 487 chr2R 25141654 25141668 chr2R 25159343 25159357 roo 4 17688 2.5 2.0 2.2 1.2 17703 chr2R 25141654 intergenic not near genes chr2R 25150506 intergenic not near genes chr2R 25159357 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-721 488 chr3L 30864 30886 chr3L 30991 30993 7 125 3.0 3.5 3.2 1.7 129 chr3L 30864 intergenic not near genes chr3L 30928 intergenic not near genes chr3L 30993 intergenic not near genes chr3L_7_30001 chr3L_30001 RAL-721 489 chr3L 68995 69014 chr3L 69068 69068 5 72 0.5 2.5 1.5 2.0 73 chr3L 68995 3` UTR Lsp1gamma + chr3L 69032 intergenic Lsp1gamma +,CR44510 + chr3L 69068 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-721 490 chr3L 110218 110242 chr3L 119385 119388 roo 5 9163 2.5 2.5 2.5 1.4 9170 chr3L 110218 intergenic not near genes chr3L 114803 intergenic not near genes chr3L 119388 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-721 491 chr3L 133837 133866 chr3L 134104 134134 5 267 2.0 0.0 1.0 2.5 297 chr3L 133837 intron Pdk1 + chr3L 133986 intron Pdk1 + chr3L 134134 intron Pdk1 + chr3L_5_130001 chr3L_130001 RAL-721 492 chr3L 402697 402718 chr3L 409748 409770 297 5 7052 1.0 6.5 3.8 1.0 7073 chr3L 402697 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-721 493 chr3L 459968 460007 chr3L 460044 460084 7 77 0.5 1.0 0.8 3.9 116 chr3L 459968 intron klar - chr3L 460026 intron klar - chr3L 460084 intron klar - chr3L_7_460001 chr3L_460001 RAL-721 494 chr3L 467454 467621 chr3L 467530 467698 12 76 3.0 1.5 2.2 3.8 244 chr3L 467454 intron klar - chr3L 467576 intron klar - chr3L 467698 intron klar - chr3L_12_465001 chr3L_465001 RAL-721 495 chr3L 514278 514306 chr3L 514355 514383 8 76 1.5 3.0 2.2 2.5 105 chr3L 514278 intron klar - chr3L 514330 intron klar - chr3L 514383 intron klar - chr3L_8_510001 chr3L_510001 RAL-721 496 chr3L 535046 535079 chr3L 535127 535160 12 80 2.5 1.5 2.0 4.0 114 chr3L 535046 intron klar - chr3L 535103 intron klar - chr3L 535160 intron klar - chr3L_12_535001 chr3L_535001 RAL-721 497 chr3L 651398 651418 chr3L 651481 651506 5 86 3.5 2.0 2.8 1.3 108 chr3L 651398 intergenic Gale +,CG3402 - chr3L 651452 intergenic CG3402 -,Gale + chr3L 651506 intergenic CG3402 -,Gale + chr3L_5_650001 chr3L_650001 RAL-721 498 chr3L 665822 665837 chr3L 666088 666104 7 263 2.5 6.5 4.5 1.3 282 chr3L 665822 intergenic not near genes chr3L 665963 intergenic not near genes chr3L 666104 intergenic not near genes chr3L_7_665001 chr3L_665001 RAL-721 499 chr3L 789913 789945 chr3L 790398 790429 roo 7 483 2.0 1.0 1.5 2.8 516 chr3L 789913 intergenic not near genes chr3L 790171 intergenic not near genes chr3L 790429 intergenic not near genes chr3L_7_790001 chr3L_790001 RAL-721 500 chr3L 822090 822095 chr3L 822170 822175 4 79 0.5 5.5 3.0 1.0 85 chr3L 822090 intergenic not near genes chr3L 822132 intergenic not near genes chr3L 822175 intergenic not near genes chr3L_4_820001 chr3L_820001 RAL-721 501 chr3L 925177 925207 chr3L 932602 932633 mdg1 8 7426 2.0 1.0 1.5 3.2 7456 chr3L 925177 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-721 502 chr3L 1045554 1045582 chr3L 1045652 1045655 12 94 0.5 3.5 2.0 4.0 101 chr3L 1045554 intron bab1 - chr3L 1045604 intron bab1 - chr3L 1045655 intron bab1 - chr3L_12_1045001 chr3L_1045001 RAL-721 503 chr3L 1061165 1061181 chr3L 1061244 1061247 6 76 4.5 1.5 3.0 1.5 82 chr3L 1061165 intron bab1 - chr3L 1061206 intron bab1 - chr3L 1061247 intron bab1 - chr3L_6_1060001 chr3L_1060001 RAL-721 504 chr3L 1109634 1109666 chr3L 1109722 1109737 10 84 0.5 4.0 2.2 3.1 103 chr3L 1109634 intergenic not near genes chr3L 1109686 intergenic not near genes chr3L 1109737 intergenic not near genes chr3L_10_1105001 chr3L_1105001 RAL-721 505 chr3L 1154132 1154163 chr3L 1163281 1163307 roo 4 9145 2.5 0.5 1.5 1.6 9175 chr3L 1154132 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163307 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-721 506 chr3L 1219595 1219623 chr3L 1227328 1227356 412 7 7733 2.5 1.5 2.0 2.3 7761 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-721 507 chr3L 1260142 1260161 chr3L 1260222 1260241 4 80 0.5 1.5 1.0 2.0 99 chr3L 1260142 intron CG9134 + chr3L 1260192 intron CG9134 + chr3L 1260241 intron CG9134 + chr3L_4_1260001 chr3L_1260001 RAL-721 508 chr3L 1282715 1282726 chr3L 1282817 1282822 4 100 3.0 1.5 2.2 1.2 107 chr3L 1282715 intron CG32333 + chr3L 1282768 intron CG32333 + chr3L 1282822 intron CG32333 + chr3L_4_1280001 chr3L_1280001 RAL-721 509 chr3L 1310982 1311005 chr3L 1315844 1315869 9 4863 29.0 29.5 29.2 0.3 4887 chr3L 1310982 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315869 exon CG9153 + chr3L_9_1310001 chr3L_1310001 RAL-721 510 chr3L 1396738 1396758 chr3L 1396822 1396822 7 81 1.0 2.0 1.5 2.8 84 chr3L 1396738 intron Ptp61F - chr3L 1396780 intron Ptp61F - chr3L 1396822 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-721 511 chr3L 1415776 1415802 chr3L 1415857 1415883 5 81 0.5 3.5 2.0 1.7 107 chr3L 1415776 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415883 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-721 512 chr3L 1506006 1506024 chr3L 1513603 1513620 17.6 11 7596 2.5 4.0 3.2 2.6 7614 chr3L 1506006 intron,intron Psa +,cue - chr3L 1509813 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_11_1505001 chr3L_1505001 RAL-721 513 chr3L 1844111 1844149 chr3L 1844205 1844238 11 83 0.5 0.5 0.5 7.3 127 chr3L 1844111 intergenic not near genes chr3L 1844174 intergenic not near genes chr3L 1844238 intergenic not near genes chr3L_11_1840001 chr3L_1840001 RAL-721 514 chr3L 1901367 1901373 chr3L 1901459 1901466 5 93 7.5 1.0 4.2 1.0 99 chr3L 1901367 intron CG1887 - chr3L 1901416 intron CG1887 - chr3L 1901466 intron CG1887 - chr3L_5_1900001 chr3L_1900001 RAL-721 515 chr3L 1901375 1901401 chr3L 1901456 1901494 7 89 3.0 1.0 2.0 2.3 119 chr3L 1901375 intron CG1887 - chr3L 1901434 intron CG1887 - chr3L 1901494 intron CG1887 - chr3L_7_1900001 chr3L_1900001 RAL-721 516 chr3L 1988862 1988868 chr3L 1989029 1989047 5 177 2.0 4.0 3.0 1.2 185 chr3L 1988862 intergenic not near genes chr3L 1988954 intergenic not near genes chr3L 1989047 intergenic not near genes chr3L_5_1985001 chr3L_1985001 RAL-721 517 chr3L 2018851 2018874 chr3L 2019120 2019134 5 263 4.0 3.0 3.5 1.1 283 chr3L 2018851 intergenic not near genes chr3L 2018992 intergenic not near genes chr3L 2019134 intergenic not near genes chr3L_5_2015001 chr3L_2015001 RAL-721 518 chr3L 2278002 2278008 chr3L 2278183 2278201 5 192 0.0 1.5 0.8 2.8 199 chr3L 2278002 3` UTR yellow-g2 + chr3L 2278102 intergenic yellow-g2 + chr3L 2278201 intergenic yellow-g2 + chr3L_5_2275001 chr3L_2275001 RAL-721 519 chr3L 2310539 2310565 chr3L 2310659 2310686 12 120 3.5 1.0 2.2 3.8 147 chr3L 2310539 intergenic not near genes chr3L 2310612 intergenic not near genes chr3L 2310686 intergenic not near genes chr3L_12_2310001 chr3L_2310001 RAL-721 520 chr3L 2330772 2330793 chr3L 2330850 2330871 7 76 3.5 1.5 2.5 2.0 99 chr3L 2330772 intron MsR1 + chr3L 2330822 intron MsR1 + chr3L 2330871 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-721 521 chr3L 2382714 2382734 chr3L 2382784 2382816 7 72 3.5 1.5 2.5 2.0 102 chr3L 2382714 intergenic not near genes chr3L 2382765 intergenic not near genes chr3L 2382816 intergenic not near genes chr3L_7_2380001 chr3L_2380001 RAL-721 522 chr3L 2447503 2447536 chr3L 2456658 2456662 roo 4 9142 0.5 4.5 2.5 1.1 9159 chr3L 2447503 intron CG45186 + chr3L 2452082 intron CG45186 + chr3L 2456662 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-721 523 chr3L 2517206 2517232 chr3L 2517285 2517312 12 80 2.0 4.0 3.0 3.0 106 chr3L 2517206 intron,5` UTR Spn -,CR45170 + chr3L 2517259 intron,5` UTR Spn -,CR45170 + chr3L 2517312 intron,intron Spn -,CR45170 + chr3L_12_2515001 chr3L_2515001 RAL-721 524 chr3L 2532222 2532239 chr3L 2532286 2532318 8 67 1.0 2.5 1.8 2.9 96 chr3L 2532222 intron Spn - chr3L 2532270 intron Spn - chr3L 2532318 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-721 525 chr3L 2683644 2683669 chr3L 2683733 2683760 10 90 1.0 4.0 2.5 2.9 116 chr3L 2683644 intron Fife - chr3L 2683702 intron Fife - chr3L 2683760 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-721 526 chr3L 2683951 2683974 chr3L 2684024 2684050 7 75 3.0 3.0 3.0 1.8 99 chr3L 2683951 intron Fife - chr3L 2684000 intron Fife - chr3L 2684050 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-721 527 chr3L 2795726 2795743 chr3L 2795849 2795866 4 122 1.5 3.5 2.5 1.1 140 chr3L 2795726 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-721 528 chr3L 2841602 2841633 chr3L 2841690 2841722 7 84 2.5 0.5 1.5 2.8 120 chr3L 2841602 intron CG43444 - chr3L 2841662 intron CG43444 - chr3L 2841722 intron CG43444 - chr3L_7_2840001 chr3L_2840001 RAL-721 529 chr3L 3028347 3028373 chr3L 3028423 3028437 7 71 1.0 3.5 2.2 2.2 90 chr3L 3028347 intergenic not near genes chr3L 3028392 intergenic not near genes chr3L 3028437 intergenic not near genes chr3L_7_3025001 chr3L_3025001 RAL-721 530 chr3L 3061301 3061305 chr3L 3069875 3069886 Tirant 5 8581 5.5 1.5 3.5 1.1 8585 chr3L 3061301 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069886 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-721 531 chr3L 3061309 3061317 chr3L 3069866 3069900 Tirant 4 8567 3.5 1.0 2.2 1.2 8591 chr3L 3061309 intron CG32486 - chr3L 3065604 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-721 532 chr3L 3259815 3259830 chr3L 3259915 3259930 4 100 0.5 2.5 1.5 1.6 115 chr3L 3259815 intron ckd + chr3L 3259872 intron ckd + chr3L 3259930 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-721 533 chr3L 3281439 3281472 chr3L 3281935 3281951 Doc 11 491 2.5 5.0 3.8 2.3 512 chr3L 3281439 intron CG12017 + chr3L 3281695 intron CG12017 + chr3L 3281951 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-721 534 chr3L 3434575 3434608 chr3L 3434855 3434864 9 276 1.0 3.5 2.2 2.8 289 chr3L 3434575 intron eIF5B - chr3L 3434720 intron eIF5B - chr3L 3434864 intron eIF5B - chr3L_9_3430001 chr3L_3430001 RAL-721 535 chr3L 3449329 3449348 chr3L 3449410 3449429 5 81 0.0 2.5 1.2 2.3 100 chr3L 3449329 intron eIF5B - chr3L 3449379 intron eIF5B - chr3L 3449429 intron eIF5B - chr3L_5_3445001 chr3L_3445001 RAL-721 536 chr3L 3475077 3475112 chr3L 3475521 3475554 jockey 6 439 1.5 2.0 1.8 2.1 477 chr3L 3475077 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-721 537 chr3L 3601305 3601331 chr3L 3606615 3606640 copia 5 5309 3.0 2.0 2.5 1.4 5335 chr3L 3601305 intron Eip63E + chr3L 3603972 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-721 538 chr3L 3686078 3686094 chr3L 3686161 3686179 5 83 3.0 4.0 3.5 1.1 101 chr3L 3686078 intergenic not near genes chr3L 3686128 intergenic not near genes chr3L 3686179 intergenic not near genes chr3L_5_3685001 chr3L_3685001 RAL-721 539 chr3L 3788656 3788688 chr3L 3791441 3791464 8 2778 16.5 24.5 20.5 0.4 2808 chr3L 3788656 intron CG32264 - chr3L 3790060 intron CG32264 - chr3L 3791464 intron,3` UTR CG32264 -,CG32266 + chr3L_8_3790001 chr3L_3790001 RAL-721 540 chr3L 3803531 3803556 chr3L 3803614 3803645 4 86 0.0 0.5 0.2 3.3 114 chr3L 3803531 intron CG32264 - chr3L 3803588 intron CG32264 - chr3L 3803645 intron CG32264 - chr3L_4_3800001 chr3L_3800001 RAL-721 541 chr3L 3845334 3845356 chr3L 3845426 3845448 7 92 7.5 2.0 4.8 1.2 114 chr3L 3845334 intergenic not near genes chr3L 3845391 intergenic not near genes chr3L 3845448 intergenic not near genes chr3L_7_3845001 chr3L_3845001 RAL-721 542 chr3L 4098335 4098361 chr3L 4098411 4098421 8 72 2.0 0.0 1.0 4.0 86 chr3L 4098335 intron CG14995 - chr3L 4098378 intron CG14995 - chr3L 4098421 intron CG14995 - chr3L_8_4095001 chr3L_4095001 RAL-721 543 chr3L 4342413 4342438 chr3L 4342491 4342512 7 75 2.0 2.5 2.2 2.2 99 chr3L 4342413 intron Cip4 - chr3L 4342462 intron Cip4 - chr3L 4342512 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-721 544 chr3L 4519419 4519451 chr3L 4519496 4519528 8 76 1.0 2.5 1.8 2.9 109 chr3L 4519419 intron Tie - chr3L 4519474 intron Tie - chr3L 4519528 intron Tie - chr3L_8_4515001 chr3L_4515001 RAL-721 545 chr3L 4536374 4536385 chr3L 4536475 4536486 4 101 3.5 2.5 3.0 1.0 112 chr3L 4536374 intron CG11353 + chr3L 4536430 intron CG11353 + chr3L 4536486 intron CG11353 + chr3L_4_4535001 chr3L_4535001 RAL-721 546 chr3L 4597213 4597237 chr3L 4597295 4597319 7 78 2.5 3.0 2.8 1.8 106 chr3L 4597213 intron Src64B - chr3L 4597266 intron Src64B - chr3L 4597319 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-721 547 chr3L 4638309 4638329 chr3L 4638437 4638459 6 130 2.0 0.5 1.2 2.7 150 chr3L 4638309 intron axo - chr3L 4638384 intron axo - chr3L 4638459 intron axo - chr3L_6_4635001 chr3L_4635001 RAL-721 548 chr3L 4654196 4654223 chr3L 4654278 4654305 8 82 1.0 3.5 2.2 2.5 109 chr3L 4654196 intron axo - chr3L 4654250 intron axo - chr3L 4654305 intron axo - chr3L_8_4650001 chr3L_4650001 RAL-721 549 chr3L 4797634 4797655 chr3L 4797704 4797714 6 71 2.0 3.0 2.5 1.7 80 chr3L 4797634 intergenic not near genes chr3L 4797674 intergenic not near genes chr3L 4797714 intergenic not near genes chr3L_6_4795001 chr3L_4795001 RAL-721 550 chr3L 4858303 4858328 chr3L 4858391 4858418 4 84 4.0 2.5 3.2 1.0 115 chr3L 4858303 intergenic not near genes chr3L 4858360 intergenic not near genes chr3L 4858418 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-721 551 chr3L 4901128 4901147 chr3L 4907318 4907336 diver 5 6188 2.0 1.5 1.8 1.8 6208 chr3L 4901128 intergenic CG13704 + chr3L 4904232 intergenic not near genes chr3L 4907336 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-721 552 chr3L 4944739 4944766 chr3L 4944834 4944859 4 94 3.0 0.5 1.8 1.4 120 chr3L 4944739 intron Con - chr3L 4944799 intron Con - chr3L 4944859 intron Con - chr3L_4_4940001 chr3L_4940001 RAL-721 553 chr3L 5076843 5076872 chr3L 5076932 5076961 6 86 0.0 1.0 0.5 4.0 118 chr3L 5076843 intron Con - chr3L 5076902 intron Con - chr3L 5076961 intron Con - chr3L_6_5075001 chr3L_5075001 RAL-721 554 chr3L 5103992 5104009 chr3L 5104152 5104182 9 167 1.0 1.5 1.2 4.1 190 chr3L 5103992 intergenic not near genes chr3L 5104087 intergenic not near genes chr3L 5104182 intergenic not near genes chr3L_9_5100001 chr3L_5100001 RAL-721 555 chr3L 5164642 5164668 chr3L 5164718 5164744 5 74 0.0 0.5 0.2 4.2 102 chr3L 5164642 intron shep - chr3L 5164693 intron shep - chr3L 5164744 intron shep - chr3L_5_5160001 chr3L_5160001 RAL-721 556 chr3L 5184319 5184353 chr3L 5184402 5184415 12 81 2.5 1.0 1.8 4.3 96 chr3L 5184319 intron shep - chr3L 5184367 intron shep - chr3L 5184415 intron shep - chr3L_12_5180001 chr3L_5180001 RAL-721 557 chr3L 5254256 5254269 chr3L 5254334 5254347 6 78 4.0 2.0 3.0 1.5 91 chr3L 5254256 intron shep - chr3L 5254302 intron shep - chr3L 5254347 intron shep - chr3L_6_5250001 chr3L_5250001 RAL-721 558 chr3L 5315214 5315243 chr3L 5316625 5316643 7 1409 11.0 12.0 11.5 0.6 1429 chr3L 5315214 intergenic not near genes chr3L 5315928 intergenic CR45741 - chr3L 5316643 intergenic CR45741 - chr3L_7_5315001 chr3L_5315001 RAL-721 559 chr3L 5315185 5315215 chr3L 5317055 5317088 5 1871 15.0 18.0 16.5 0.3 1903 chr3L 5315185 intergenic not near genes chr3L 5316136 intergenic CR45741 - chr3L 5317088 intergenic not near genes chr3L_5_5315001 chr3L_5315001 RAL-721 560 chr3L 5482940 5483085 chr3L 5483149 5483202 8 174 3.0 0.0 1.5 3.2 262 chr3L 5482940 exon CG4835 + chr3L 5483071 exon CG4835 + chr3L 5483202 exon CG4835 + chr3L_8_5480001 chr3L_5480001 RAL-721 561 chr3L 5788700 5788735 chr3L 5788826 5788861 18 124 1.0 1.5 1.2 8.2 161 chr3L 5788700 intergenic not near genes chr3L 5788780 intergenic not near genes chr3L 5788861 intergenic not near genes chr3L_18_5785001 chr3L_5785001 RAL-721 562 chr3L 5910038 5910058 chr3L 5910279 5910299 pogo 7 239 0.5 3.0 1.8 2.5 261 chr3L 5910038 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910299 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-721 563 chr3L 5923505 5923521 chr3L 5923581 5923595 6 75 4.0 1.0 2.5 1.7 90 chr3L 5923505 exon CG32407 + chr3L 5923550 3` UTR CG32407 + chr3L 5923595 intergenic CG32407 +,Vap-33B + chr3L_6_5920001 chr3L_5920001 RAL-721 564 chr3L 6001689 6001706 chr3L 6004389 6004406 jockey 5 2700 2.5 3.0 2.8 1.3 2717 chr3L 6001689 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004406 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-721 565 chr3L 6028373 6028397 chr3L 6028470 6028485 5 96 2.0 3.5 2.8 1.3 112 chr3L 6028373 intergenic not near genes chr3L 6028429 intergenic not near genes chr3L 6028485 intergenic not near genes chr3L_5_6025001 chr3L_6025001 RAL-721 566 chr3L 6063940 6063966 chr3L 6064024 6064045 4 82 2.0 2.5 2.2 1.2 105 chr3L 6063940 intergenic not near genes chr3L 6063992 intergenic not near genes chr3L 6064045 intergenic not near genes chr3L_4_6060001 chr3L_6060001 RAL-721 567 chr3L 6220915 6220946 chr3L 6230066 6230095 roo 7 9151 2.0 4.0 3.0 1.8 9180 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230095 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-721 568 chr3L 6293782 6293791 chr3L 6293842 6293873 4 76 2.0 1.5 1.8 1.4 91 chr3L 6293782 intergenic not near genes chr3L 6293828 intergenic not near genes chr3L 6293873 intergenic not near genes chr3L_4_6290001 chr3L_6290001 RAL-721 569 chr3L 6335015 6335036 chr3L 6335484 6335507 297 4 470 1.0 2.5 1.8 1.4 492 chr3L 6335015 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335507 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-721 570 chr3L 6504321 6504342 chr3L 6504411 6504443 6 98 4.0 5.0 4.5 1.1 122 chr3L 6504321 intron sfl + chr3L 6504382 intron sfl + chr3L 6504443 intron sfl + chr3L_6_6500001 chr3L_6500001 RAL-721 571 chr3L 6657440 6657473 chr3L 6657592 6657625 5 151 3.5 2.0 2.8 1.3 185 chr3L 6657440 intergenic not near genes chr3L 6657532 intergenic not near genes chr3L 6657625 intergenic not near genes chr3L_5_6655001 chr3L_6655001 RAL-721 572 chr3L 6855932 6855951 chr3L 6860718 6860730 Doc 6 4784 2.0 1.5 1.8 2.1 4798 chr3L 6855932 intergenic not near genes chr3L 6858331 intergenic not near genes chr3L 6860730 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-721 573 chr3L 6902195 6902230 chr3L 6902278 6902311 10 76 1.0 3.5 2.2 3.1 116 chr3L 6902195 intergenic not near genes chr3L 6902253 intergenic not near genes chr3L 6902311 intergenic not near genes chr3L_10_6900001 chr3L_6900001 RAL-721 574 chr3L 6942066 6942086 chr3L 6942165 6942185 6 99 5.0 1.5 3.2 1.4 119 chr3L 6942066 intergenic not near genes chr3L 6942126 intergenic not near genes chr3L 6942185 intergenic not near genes chr3L_6_6940001 chr3L_6940001 RAL-721 575 chr3L 7033176 7033205 chr3L 7033255 7033283 9 78 1.5 5.5 3.5 2.0 107 chr3L 7033176 intron Mp + chr3L 7033230 intron Mp + chr3L 7033283 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-721 576 chr3L 7079188 7079209 chr3L 7079257 7079267 5 68 1.0 1.5 1.2 2.3 79 chr3L 7079188 intergenic not near genes chr3L 7079228 intergenic not near genes chr3L 7079267 intergenic not near genes chr3L_5_7075001 chr3L_7075001 RAL-721 577 chr3L 7112582 7112606 chr3L 7112669 7112682 6 84 0.5 1.0 0.8 3.3 100 chr3L 7112582 intron form3 + chr3L 7112632 intron form3 + chr3L 7112682 intron form3 + chr3L_6_7110001 chr3L_7110001 RAL-721 578 chr3L 7285323 7285350 chr3L 7285435 7285462 4 112 2.5 1.0 1.8 1.4 139 chr3L 7285323 intron unc-13-4A - chr3L 7285392 intron unc-13-4A - chr3L 7285462 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-721 579 chr3L 7426109 7426132 chr3L 7426245 7426270 4 137 1.0 2.5 1.8 1.4 161 chr3L 7426109 intron CG42458 + chr3L 7426190 intron CG42458 + chr3L 7426270 intron CG42458 + chr3L_4_7425001 chr3L_7425001 RAL-721 580 chr3L 7450689 7450712 chr3L 7450771 7450795 5 82 2.0 1.0 1.5 2.0 106 chr3L 7450689 intron CG42458 + chr3L 7450742 intron CG42458 + chr3L 7450795 intron CG42458 + chr3L_5_7450001 chr3L_7450001 RAL-721 581 chr3L 7464152 7464169 chr3L 7464296 7464312 4 144 4.0 2.0 3.0 1.0 160 chr3L 7464152 intergenic not near genes chr3L 7464232 intergenic not near genes chr3L 7464312 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-721 582 chr3L 7488867 7488889 chr3L 7488948 7488970 6 78 0.0 1.0 0.5 4.0 103 chr3L 7488867 intergenic not near genes chr3L 7488918 intergenic not near genes chr3L 7488970 intergenic not near genes chr3L_6_7485001 chr3L_7485001 RAL-721 583 chr3L 7695505 7695528 chr3L 7695586 7695610 7 82 0.5 2.0 1.2 3.2 105 chr3L 7695505 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7695558 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7695610 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L_7_7695001 chr3L_7695001 RAL-721 584 chr3L 7793724 7793745 chr3L 7800776 7800797 297 7 7051 2.5 2.5 2.5 2.0 7073 chr3L 7793724 intron CG32369 - chr3L 7797260 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-721 585 chr3L 7886526 7886545 chr3L 7889044 7889062 Stalker4 10 2517 2.0 3.0 2.5 2.9 2536 chr3L 7886526 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_10_7885001 chr3L_7885001 RAL-721 586 chr3L 7985364 7985388 chr3L 7987689 7987715 NOF 4 2327 4.0 2.0 3.0 1.0 2351 chr3L 7985364 intron nmo + chr3L 7986540 intron nmo + chr3L 7987715 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-721 587 chr3L 8166120 8166142 chr3L 8166333 8166360 4 216 1.0 1.5 1.2 1.8 240 chr3L 8166120 intergenic not near genes chr3L 8166240 intergenic not near genes chr3L 8166360 intergenic not near genes chr3L_4_8165001 chr3L_8165001 RAL-721 588 chr3L 8364521 8364534 chr3L 8364612 8364625 5 91 2.0 0.0 1.0 2.5 104 chr3L 8364521 intergenic not near genes chr3L 8364573 intergenic not near genes chr3L 8364625 intergenic not near genes chr3L_5_8360001 chr3L_8360001 RAL-721 589 chr3L 8414109 8414134 chr3L 8414190 8414208 4 80 1.0 2.5 1.8 1.4 99 chr3L 8414109 intron Exo70 + chr3L 8414158 intron Exo70 + chr3L 8414208 intron Exo70 + chr3L_4_8410001 chr3L_8410001 RAL-721 590 chr3L 8498296 8498323 chr3L 8505762 8505789 blood 5 7467 0.5 0.5 0.5 3.3 7493 chr3L 8498296 intron CG43163 - chr3L 8502042 intron CG43163 - chr3L 8505789 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-721 591 chr3L 8682615 8682628 chr3L 8682702 8682715 5 85 1.5 3.0 2.2 1.6 100 chr3L 8682615 intergenic not near genes chr3L 8682665 intergenic not near genes chr3L 8682715 intergenic not near genes chr3L_5_8680001 chr3L_8680001 RAL-721 592 chr3L 9013691 9013691 chr3L 18417066 18417066 7 9403375 22.0 17.0 19.5 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-721 593 chr3L 9024520 9024534 chr3L 9024600 9024613 5 79 0.0 4.0 2.0 1.7 93 chr3L 9024520 intergenic not near genes chr3L 9024566 intergenic not near genes chr3L 9024613 intergenic not near genes chr3L_5_9020001 chr3L_9020001 RAL-721 594 chr3L 9061134 9061147 chr3L 9061242 9061255 4 108 5.0 2.5 3.8 0.8 121 chr3L 9061134 intron Argk - chr3L 9061194 intron Argk - chr3L 9061255 intron Argk - chr3L_4_9060001 chr3L_9060001 RAL-721 595 chr3L 9061149 9061160 chr3L 9061241 9061268 4 104 1.5 2.5 2.0 1.3 119 chr3L 9061149 intron Argk - chr3L 9061208 intron Argk - chr3L 9061268 intron Argk - chr3L_4_9060001 chr3L_9060001 RAL-721 596 chr3L 9076934 9076958 chr3L 9084493 9084515 412 11 7559 4.5 2.0 3.2 2.6 7581 chr3L 9076934 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084515 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-721 597 chr3L 9115254 9115273 chr3L 9115337 9115356 9 81 1.0 2.5 1.8 3.2 102 chr3L 9115254 intron bol - chr3L 9115305 intron bol - chr3L 9115356 intron bol - chr3L_9_9115001 chr3L_9115001 RAL-721 598 chr3L 9202512 9202531 chr3L 9202609 9202628 5 96 6.0 2.0 4.0 1.0 116 chr3L 9202512 intergenic not near genes chr3L 9202570 intergenic Slc45-1 - chr3L 9202628 intergenic Slc45-1 - chr3L_5_9200001 chr3L_9200001 RAL-721 599 chr3L 9219242 9219263 chr3L 9219914 9219914 jockey 5 667 5.0 2.5 3.8 1.0 672 chr3L 9219242 intergenic not near genes chr3L 9219578 intergenic not near genes chr3L 9219914 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-721 600 chr3L 9232858 9232872 chr3L 9232932 9232948 4 72 0.0 0.5 0.2 3.3 90 chr3L 9232858 intergenic not near genes chr3L 9232903 intergenic not near genes chr3L 9232948 intergenic not near genes chr3L_4_9230001 chr3L_9230001 RAL-721 601 chr3L 9234543 9234558 chr3L 9234748 9234769 5 209 2.5 3.0 2.8 1.3 226 chr3L 9234543 intergenic not near genes chr3L 9234656 intergenic CG4483 - chr3L 9234769 intergenic CG4483 - chr3L_5_9230001 chr3L_9230001 RAL-721 602 chr3L 9290048 9290074 chr3L 9290124 9290149 4 76 0.0 0.0 0.0 4.0 101 chr3L 9290048 intergenic not near genes chr3L 9290098 intergenic not near genes chr3L 9290149 intergenic not near genes chr3L_4_9290001 chr3L_9290001 RAL-721 603 chr3L 9510914 9510953 chr3L 9511007 9511032 6 78 0.0 2.0 1.0 3.0 118 chr3L 9510914 intron RpS9 - chr3L 9510973 intron RpS9 - chr3L 9511032 intron RpS9 - chr3L_6_9510001 chr3L_9510001 RAL-721 604 chr3L 9658911 9658931 chr3L 9659795 9659815 5 884 3.5 1.0 2.2 1.6 904 chr3L 9658911 intron,3` UTR fry -,CG33696 + chr3L 9659363 intron,3` UTR fry -,CG33696 + chr3L 9659815 intron fry - chr3L_5_9655001 chr3L_9655001 RAL-721 605 chr3L 9745497 9745518 chr3L 9745581 9745604 7 83 2.5 2.0 2.2 2.2 107 chr3L 9745497 intron CG42268 - chr3L 9745550 intron CG42268 - chr3L 9745604 intron CG42268 - chr3L_7_9745001 chr3L_9745001 RAL-721 606 chr3L 9907884 9907895 chr3L 9907957 9907959 4 73 8.5 4.5 6.5 0.5 75 chr3L 9907884 intergenic CG34356 + chr3L 9907922 intergenic CG34356 + chr3L 9907959 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-721 607 chr3L 9976955 9976975 chr3L 9977036 9977041 4 73 0.0 2.0 1.0 2.0 86 chr3L 9976955 intron dpr6 + chr3L 9976998 intron dpr6 + chr3L 9977041 intron dpr6 + chr3L_4_9975001 chr3L_9975001 RAL-721 608 chr3L 10011595 10011621 chr3L 10011677 10011703 4 82 3.0 1.5 2.2 1.2 108 chr3L 10011595 intron dpr6 + chr3L 10011649 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_4_10010001 chr3L_10010001 RAL-721 609 chr3L 10161433 10161460 chr3L 10161512 10161515 4 70 0.0 1.5 0.8 2.2 82 chr3L 10161433 intron dpr10 - chr3L 10161474 intron dpr10 - chr3L 10161515 intron dpr10 - chr3L_4_10160001 chr3L_10160001 RAL-721 610 chr3L 10214740 10214828 chr3L 10214821 10214930 5 94 0.0 0.0 0.0 5.0 190 chr3L 10214740 intergenic not near genes chr3L 10214835 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_5_10210001 chr3L_10210001 RAL-721 611 chr3L 10237492 10237502 chr3L 10237600 10237603 4 104 1.0 1.5 1.2 1.8 111 chr3L 10237492 intergenic not near genes chr3L 10237548 intergenic not near genes chr3L 10237603 intergenic not near genes chr3L_4_10235001 chr3L_10235001 RAL-721 612 chr3L 10250337 10250360 chr3L 10250428 10250451 9 90 0.5 2.5 1.5 3.6 114 chr3L 10250337 intergenic not near genes chr3L 10250394 intergenic not near genes chr3L 10250451 intergenic not near genes chr3L_9_10250001 chr3L_10250001 RAL-721 613 chr3L 10308752 10308769 chr3L 10308829 10308846 4 77 2.5 2.5 2.5 1.1 94 chr3L 10308752 intergenic not near genes chr3L 10308799 intergenic not near genes chr3L 10308846 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-721 614 chr3L 10417580 10417589 chr3L 10417656 10417666 4 76 6.5 3.0 4.8 0.7 86 chr3L 10417580 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417666 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-721 615 chr3L 10417590 10417605 chr3L 10417652 10417681 5 66 3.0 3.0 3.0 1.2 91 chr3L 10417590 intergenic not near genes chr3L 10417636 intergenic not near genes chr3L 10417681 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-721 616 chr3L 10456753 10456768 chr3L 10456844 10456859 4 90 1.0 1.5 1.2 1.8 106 chr3L 10456753 intergenic not near genes chr3L 10456806 intergenic not near genes chr3L 10456859 intergenic not near genes chr3L_4_10455001 chr3L_10455001 RAL-721 617 chr3L 10532742 10532773 chr3L 10532821 10532852 7 78 1.0 1.5 1.2 3.2 110 chr3L 10532742 intron A2bp1 + chr3L 10532797 intron A2bp1 + chr3L 10532852 intron A2bp1 + chr3L_7_10530001 chr3L_10530001 RAL-721 618 chr3L 10732276 10732283 chr3L 10732417 10732424 5 144 4.5 1.0 2.8 1.3 148 chr3L 10732276 intergenic not near genes chr3L 10732350 intergenic not near genes chr3L 10732424 intergenic not near genes chr3L_5_10730001 chr3L_10730001 RAL-721 619 chr3L 10762832 10762837 chr3L 10762916 10762921 4 84 8.0 2.5 5.2 0.6 89 chr3L 10762832 intergenic not near genes chr3L 10762876 intergenic not near genes chr3L 10762921 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-721 620 chr3L 10889237 10889261 chr3L 10889313 10889341 10 79 2.0 2.5 2.2 3.1 104 chr3L 10889237 intergenic not near genes chr3L 10889289 intergenic not near genes chr3L 10889341 intergenic not near genes chr3L_10_10885001 chr3L_10885001 RAL-721 621 chr3L 10937848 10937877 chr3L 10937924 10937954 8 75 3.5 2.0 2.8 2.1 106 chr3L 10937848 intergenic not near genes chr3L 10937901 intergenic not near genes chr3L 10937954 intergenic not near genes chr3L_8_10935001 chr3L_10935001 RAL-721 622 chr3L 11087062 11087086 chr3L 11088850 11088872 S-element 5 1787 1.5 1.5 1.5 2.0 1810 chr3L 11087062 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088872 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-721 623 chr3L 11105293 11105327 chr3L 11107001 11107038 X-element 6 1706 3.0 2.0 2.5 1.7 1745 chr3L 11105293 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-721 624 chr3L 11135787 11135801 chr3L 11135857 11135886 4 81 0.0 2.0 1.0 2.0 99 chr3L 11135787 intergenic CG32082 +,CG14143 + chr3L 11135836 intergenic CG32082 +,CG14143 + chr3L 11135886 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-721 625 chr3L 11277461 11277484 chr3L 11278456 11278477 Rt1a 5 993 3.0 3.0 3.0 1.2 1016 chr3L 11277461 intergenic not near genes chr3L 11277969 intergenic not near genes chr3L 11278477 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-721 626 chr3L 11329701 11329717 chr3L 11332905 11332922 jockey 4 3201 5.5 3.0 4.2 0.8 3221 chr3L 11329701 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332922 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-721 627 chr3L 11520837 11520868 chr3L 11520909 11520944 4 74 4.0 0.5 2.2 1.2 107 chr3L 11520837 intergenic Fuca -,CG11714 - chr3L 11520890 intergenic Fuca -,CG11714 - chr3L 11520944 intergenic CG11714 -,Fuca - chr3L_4_11520001 chr3L_11520001 RAL-721 628 chr3L 11579555 11579585 chr3L 11579661 11579691 8 105 2.5 2.5 2.5 2.3 136 chr3L 11579555 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579691 intergenic CG43390 - chr3L_8_11575001 chr3L_11575001 RAL-721 629 chr3L 11579720 11579741 chr3L 11580866 11580887 4 1146 1.5 5.0 3.2 1.0 1167 chr3L 11579720 intergenic CG43390 - chr3L 11580304 intergenic CG43390 - chr3L 11580887 exon CG43391 - chr3L_4_11580001 chr3L_11580001 RAL-721 630 chr3L 11678102 11678125 chr3L 11678189 11678212 5 85 1.0 0.5 0.8 2.8 110 chr3L 11678102 intron CG32085 - chr3L 11678157 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-721 631 chr3L 11701749 11701764 chr3L 11701831 11701834 5 79 3.5 4.0 3.8 1.0 85 chr3L 11701749 exon CG11658 - chr3L 11701792 intron CG11658 - chr3L 11701834 intron CG11658 - chr3L_5_11700001 chr3L_11700001 RAL-721 632 chr3L 11729682 11729695 chr3L 11729758 11729771 4 76 2.5 1.5 2.0 1.3 89 chr3L 11729682 exon CG32088 + chr3L 11729726 intron CG32088 + chr3L 11729771 intron CG32088 + chr3L_4_11725001 chr3L_11725001 RAL-721 633 chr3L 11740132 11740152 chr3L 11740230 11740250 7 97 4.0 4.0 4.0 1.4 118 chr3L 11740132 intron CG6024 - chr3L 11740191 intron CG6024 - chr3L 11740250 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-721 634 chr3L 11811460 11811487 chr3L 11811538 11811565 8 76 1.5 2.0 1.8 2.9 105 chr3L 11811460 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811565 exon CG42255 - chr3L_8_11810001 chr3L_11810001 RAL-721 635 chr3L 11846403 11846413 chr3L 11846510 11846521 4 108 0.0 1.5 0.8 2.2 118 chr3L 11846403 intergenic not near genes chr3L 11846462 intergenic not near genes chr3L 11846521 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-721 636 chr3L 11849345 11849356 chr3L 11849445 11849456 4 100 0.5 1.0 0.8 2.2 111 chr3L 11849345 intergenic not near genes chr3L 11849400 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-721 637 chr3L 11943498 11943517 chr3L 11943599 11943617 5 100 0.5 1.0 0.8 2.8 119 chr3L 11943498 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943617 intergenic CG5883 -,Rpt4R + chr3L_5_11940001 chr3L_11940001 RAL-721 638 chr3L 12234323 12234356 chr3L 12234412 12234427 16 87 3.0 4.0 3.5 3.6 104 chr3L 12234323 intron app - chr3L 12234375 intron app - chr3L 12234427 intron app - chr3L_16_12230001 chr3L_12230001 RAL-721 639 chr3L 12249992 12250004 chr3L 12250123 12250135 5 130 5.0 4.5 4.8 0.9 143 chr3L 12249992 intron app - chr3L 12250064 intron app - chr3L 12250135 intron app - chr3L_5_12250001 chr3L_12250001 RAL-721 640 chr3L 12362604 12362625 chr3L 12362733 12362752 4 129 2.0 2.5 2.2 1.2 148 chr3L 12362604 intergenic not near genes chr3L 12362678 intergenic not near genes chr3L 12362752 intergenic not near genes chr3L_4_12360001 chr3L_12360001 RAL-721 641 chr3L 12378571 12378597 chr3L 12378740 12378764 9 167 2.5 0.0 1.2 4.1 193 chr3L 12378571 intron Ncc69 - chr3L 12378668 intron Ncc69 - chr3L 12378764 intron Ncc69 - chr3L_9_12375001 chr3L_12375001 RAL-721 642 chr3L 12392447 12392476 chr3L 12392566 12392592 5 118 3.0 4.0 3.5 1.1 145 chr3L 12392447 intergenic not near genes chr3L 12392520 intergenic not near genes chr3L 12392592 intergenic not near genes chr3L_5_12390001 chr3L_12390001 RAL-721 643 chr3L 12411029 12411068 chr3L 12411139 12411178 15 110 2.0 2.0 2.0 5.0 149 chr3L 12411029 intron CG32103 - chr3L 12411104 intron CG32103 - chr3L 12411178 intron CG32103 - chr3L_15_12410001 chr3L_12410001 RAL-721 644 chr3L 12424263 12424276 chr3L 12424411 12424427 6 149 1.0 0.0 0.5 4.0 164 chr3L 12424263 intron toe - chr3L 12424345 intron toe - chr3L 12424427 intron toe - chr3L_6_12420001 chr3L_12420001 RAL-721 645 chr3L 12681690 12681717 chr3L 12682043 12682070 6 353 2.0 0.5 1.2 2.7 380 chr3L 12681690 intergenic not near genes chr3L 12681880 intergenic not near genes chr3L 12682070 intergenic not near genes chr3L_6_12680001 chr3L_12680001 RAL-721 646 chr3L 12896240 12896266 chr3L 12896312 12896325 4 65 1.0 1.0 1.0 2.0 85 chr3L 12896240 intergenic not near genes chr3L 12896282 intergenic not near genes chr3L 12896325 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-721 647 chr3L 12949283 12949317 chr3L 12949376 12949411 12 94 0.5 3.5 2.0 4.0 128 chr3L 12949283 intergenic not near genes chr3L 12949347 intergenic not near genes chr3L 12949411 intergenic not near genes chr3L_12_12945001 chr3L_12945001 RAL-721 648 chr3L 12957792 12957817 chr3L 12962273 12962298 copia 5 4481 1.5 3.0 2.2 1.6 4506 chr3L 12957792 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-721 649 chr3L 12962679 12962698 chr3L 12962790 12962814 8 115 6.5 3.0 4.8 1.4 135 chr3L 12962679 intergenic not near genes chr3L 12962746 intergenic not near genes chr3L 12962814 intergenic not near genes chr3L_8_12960001 chr3L_12960001 RAL-721 650 chr3L 13007702 13007706 chr3L 13007794 13007798 4 92 2.0 0.0 1.0 2.0 96 chr3L 13007702 exon CG11263 + chr3L 13007750 3` UTR CG11263 + chr3L 13007798 3` UTR CG11263 + chr3L_4_13005001 chr3L_13005001 RAL-721 651 chr3L 13348628 13348649 chr3L 13348712 13348729 7 81 1.0 0.0 0.5 4.7 101 chr3L 13348628 intergenic not near genes chr3L 13348678 intergenic CG17687 + chr3L 13348729 intergenic CG17687 + chr3L_7_13345001 chr3L_13345001 RAL-721 652 chr3L 13452667 13452684 chr3L 13452755 13452772 4 87 1.0 1.0 1.0 2.0 105 chr3L 13452667 intron CG10738 + chr3L 13452720 intron CG10738 + chr3L 13452772 intron CG10738 + chr3L_4_13450001 chr3L_13450001 RAL-721 653 chr3L 13477017 13477037 chr3L 13477093 13477114 4 77 0.0 2.5 1.2 1.8 97 chr3L 13477017 intergenic not near genes chr3L 13477066 intergenic stv + chr3L 13477114 intergenic stv + chr3L_4_13475001 chr3L_13475001 RAL-721 654 chr3L 13491131 13491155 chr3L 13491214 13491238 6 80 2.0 2.5 2.2 1.9 107 chr3L 13491131 intron Tgi + chr3L 13491184 intron Tgi + chr3L 13491238 intron Tgi + chr3L_6_13490001 chr3L_13490001 RAL-721 655 chr3L 13525160 13525188 chr3L 13532952 13532983 roo 7 7795 1.0 5.5 3.2 1.7 7823 chr3L 13525160 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-721 656 chr3L 13629537 13629549 chr3L 13629644 13629656 4 108 2.5 7.5 5.0 0.7 119 chr3L 13629537 intron bru-3 - chr3L 13629596 intron bru-3 - chr3L 13629656 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-721 657 chr3L 13677531 13677558 chr3L 13677608 13677635 4 74 0.0 2.0 1.0 2.0 104 chr3L 13677531 intron bru-3 - chr3L 13677583 intron bru-3 - chr3L 13677635 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-721 658 chr3L 13957884 13957893 chr3L 13958077 13958086 4 192 1.5 1.5 1.5 1.6 202 chr3L 13957884 intron CG32137 + chr3L 13957985 intron CG32137 + chr3L 13958086 intron CG32137 + chr3L_4_13955001 chr3L_13955001 RAL-721 659 chr3L 14207208 14207240 chr3L 14207307 14207337 6 99 1.5 2.0 1.8 2.1 129 chr3L 14207208 intron nuf + chr3L 14207272 intron nuf + chr3L 14207337 intron nuf + chr3L_6_14205001 chr3L_14205001 RAL-721 660 chr3L 14211440 14211464 chr3L 14211518 14211542 5 78 0.5 0.0 0.2 4.2 102 chr3L 14211440 intron nuf + chr3L 14211491 intron nuf + chr3L 14211542 intron nuf + chr3L_5_14210001 chr3L_14210001 RAL-721 661 chr3L 14245585 14245594 chr3L 14245666 14245688 1360 6 90 1.5 2.5 2.0 2.0 103 chr3L 14245585 3` UTR CR44561 - chr3L 14245636 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-721 662 chr3L 14267384 14267399 chr3L 14271807 14271822 F-element 4 4426 1.5 0.0 0.8 2.2 4438 chr3L 14267384 intergenic not near genes chr3L 14269603 intergenic not near genes chr3L 14271822 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-721 663 chr3L 14282592 14282607 chr3L 14282666 14282671 5 75 5.5 4.0 4.8 0.9 79 chr3L 14282592 intron fz + chr3L 14282632 intron fz + chr3L 14282671 intron fz + chr3L_5_14280001 chr3L_14280001 RAL-721 664 chr3L 14356540 14356547 chr3L 14356615 14356627 5 79 4.5 4.0 4.2 1.0 87 chr3L 14356540 intron fz + chr3L 14356584 intron fz + chr3L 14356627 intron fz + chr3L_5_14355001 chr3L_14355001 RAL-721 665 chr3L 14468448 14468475 chr3L 14473654 14473681 copia 6 5206 2.0 1.5 1.8 2.1 5233 chr3L 14468448 intron bbg - chr3L 14471064 intron bbg - chr3L 14473681 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-721 666 chr3L 14548511 14548535 chr3L 14548607 14548632 5 97 3.0 2.0 2.5 1.4 121 chr3L 14548511 intron CG9238 - chr3L 14548572 intron CG9238 - chr3L 14548632 intron CG9238 - chr3L_5_14545001 chr3L_14545001 RAL-721 667 chr3L 14599375 14599409 chr3L 14599452 14599483 10 76 2.5 1.5 2.0 3.3 108 chr3L 14599375 5` UTR HGTX - chr3L 14599429 5` UTR HGTX - chr3L 14599483 5` UTR HGTX - chr3L_10_14595001 chr3L_14595001 RAL-721 668 chr3L 14706291 14706324 chr3L 14706366 14706392 5 72 3.0 2.5 2.8 1.3 101 chr3L 14706291 intron ome + chr3L 14706342 intron ome + chr3L 14706392 intron ome + chr3L_5_14705001 chr3L_14705001 RAL-721 669 chr3L 14718263 14718295 chr3L 14718351 14718366 6 76 2.5 3.0 2.8 1.6 103 chr3L 14718263 intron ome + chr3L 14718314 intron ome + chr3L 14718366 intron ome + chr3L_6_14715001 chr3L_14715001 RAL-721 670 chr3L 14721187 14721208 chr3L 14723026 14723034 Rt1c 7 1839 4.5 6.0 5.2 1.1 1847 chr3L 14721187 intron ome + chr3L 14722110 intron ome + chr3L 14723034 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-721 671 chr3L 14939214 14939237 chr3L 14939363 14939386 6 149 3.0 0.0 1.5 2.4 172 chr3L 14939214 intron DCX-EMAP + chr3L 14939300 intron DCX-EMAP + chr3L 14939386 intron DCX-EMAP + chr3L_6_14935001 chr3L_14935001 RAL-721 672 chr3L 14974597 14974627 chr3L 14974702 14974732 12 104 1.5 2.5 2.0 4.0 135 chr3L 14974597 intergenic Ocho + chr3L 14974664 intergenic Ocho + chr3L 14974732 intergenic Ocho + chr3L_12_14970001 chr3L_14970001 RAL-721 673 chr3L 14995917 14995946 chr3L 14996017 14996027 8 97 1.5 1.5 1.5 3.2 110 chr3L 14995917 intron Zip71B + chr3L 14995972 intron Zip71B + chr3L 14996027 intron Zip71B + chr3L_8_14995001 chr3L_14995001 RAL-721 674 chr3L 15070109 15070131 chr3L 15070314 15070339 10 216 13.0 23.0 18.0 0.5 230 chr3L 15070109 exon cp309 - chr3L 15070224 exon cp309 - chr3L 15070339 exon cp309 - chr3L_10_15070001 chr3L_15070001 RAL-721 675 chr3L 15273345 15273361 chr3L 15273491 15273507 5 146 0.0 2.0 1.0 2.5 162 chr3L 15273345 intergenic not near genes chr3L 15273426 intergenic not near genes chr3L 15273507 intergenic not near genes chr3L_5_15270001 chr3L_15270001 RAL-721 676 chr3L 15541616 15541636 chr3L 15541707 15541727 4 90 1.0 0.5 0.8 2.2 111 chr3L 15541616 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541727 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-721 677 chr3L 15742914 15742945 chr3L 15742993 15743019 8 78 1.5 2.0 1.8 2.9 105 chr3L 15742914 intergenic not near genes chr3L 15742966 intergenic not near genes chr3L 15743019 intergenic not near genes chr3L_8_15740001 chr3L_15740001 RAL-721 678 chr3L 15756879 15756913 chr3L 15756961 15756987 4 80 3.0 0.0 1.5 1.6 108 chr3L 15756879 intergenic not near genes chr3L 15756933 intergenic not near genes chr3L 15756987 intergenic not near genes chr3L_4_15755001 chr3L_15755001 RAL-721 679 chr3L 15883190 15883222 chr3L 15883483 15883500 5 289 2.0 2.0 2.0 1.7 310 chr3L 15883190 intron pHCl - chr3L 15883345 intron pHCl - chr3L 15883500 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-721 680 chr3L 16158820 16158836 chr3L 16158905 16158921 5 85 0.0 0.5 0.2 4.2 101 chr3L 16158820 intron CG5151 - chr3L 16158870 intron CG5151 - chr3L 16158921 intron CG5151 - chr3L_5_16155001 chr3L_16155001 RAL-721 681 chr3L 16220511 16220523 chr3L 16220596 16220607 4 84 0.0 2.5 1.2 1.8 96 chr3L 16220511 intergenic not near genes chr3L 16220559 intergenic not near genes chr3L 16220607 intergenic not near genes chr3L_4_16220001 chr3L_16220001 RAL-721 682 chr3L 16264149 16264173 chr3L 16264248 16264272 9 98 2.5 2.5 2.5 2.6 123 chr3L 16264149 3` UTR CG13070 + chr3L 16264210 intergenic CG13070 + chr3L 16264272 intergenic CG13070 +,CG13051 - chr3L_9_16260001 chr3L_16260001 RAL-721 683 chr3L 16288885 16289050 chr3L 16288974 16289207 8 147 2.0 2.0 2.0 2.7 322 chr3L 16288885 intergenic CG13046 - chr3L 16289046 intergenic not near genes chr3L 16289207 intergenic not near genes chr3L_8_16285001 chr3L_16285001 RAL-721 684 chr3L 16311565 16311598 chr3L 16311647 16311679 7 82 13.5 14.0 13.8 0.5 114 chr3L 16311565 intergenic CR32160 + chr3L 16311622 intergenic CR32160 + chr3L 16311679 intergenic CR32160 + chr3L_7_16310001 chr3L_16310001 RAL-721 685 chr3L 16493978 16494010 chr3L 16494494 16494500 jockey 6 509 3.5 4.5 4.0 1.2 522 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494239 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494500 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-721 686 chr3L 16541837 16541874 chr3L 16541927 16541963 4 88 1.5 2.0 1.8 1.4 126 chr3L 16541837 intron CG43373 - chr3L 16541900 intron CG43373 - chr3L 16541963 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-721 687 chr3L 16616518 16616542 chr3L 16621846 16621870 297 5 5326 0.5 3.0 1.8 1.8 5352 chr3L 16616518 3` UTR Abl - chr3L 16619194 3` UTR Abl - chr3L 16621870 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-721 688 chr3L 16652283 16652304 chr3L 16652368 16652389 6 85 3.0 2.5 2.8 1.6 106 chr3L 16652283 intron Baldspot - chr3L 16652336 intron Baldspot - chr3L 16652389 intron Baldspot - chr3L_6_16650001 chr3L_16650001 RAL-721 689 chr3L 16668742 16668775 chr3L 16668828 16668845 12 82 5.0 5.5 5.2 1.9 103 chr3L 16668742 intergenic not near genes chr3L 16668794 intergenic not near genes chr3L 16668845 intergenic not near genes chr3L_12_16665001 chr3L_16665001 RAL-721 690 chr3L 16693863 16693887 chr3L 16694187 16694213 10 324 1.5 3.0 2.2 3.1 350 chr3L 16693863 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694038 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694213 exon,5` UTR,intron Lasp -,CG43954 -,CR45179 + chr3L_10_16690001 chr3L_16690001 RAL-721 691 chr3L 16869574 16869605 chr3L 16869657 16869688 5 82 1.5 1.0 1.2 2.3 114 chr3L 16869574 intron Lmpt + chr3L 16869631 intron Lmpt + chr3L 16869688 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-721 692 chr3L 16873350 16873365 chr3L 16873455 16873464 4 103 3.0 2.5 2.8 1.1 114 chr3L 16873350 intron Lmpt + chr3L 16873407 intron Lmpt + chr3L 16873464 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-721 693 chr3L 16945734 16945761 chr3L 16954887 16954914 roo 4 9148 4.5 2.0 3.2 1.0 9180 chr3L 16945734 exon Obp73a + chr3L 16950324 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-721 694 chr3L 16966543 16966568 chr3L 16966671 16966696 6 128 2.5 4.0 3.2 1.4 153 chr3L 16966543 intron Nc73EF + chr3L 16966620 intron Nc73EF + chr3L 16966696 intron Nc73EF + chr3L_6_16965001 chr3L_16965001 RAL-721 695 chr3L 16985507 16985530 chr3L 16985640 16985663 5 132 2.5 2.5 2.5 1.4 156 chr3L 16985507 intron Exn + chr3L 16985585 intron Exn + chr3L 16985663 intron Exn + chr3L_5_16985001 chr3L_16985001 RAL-721 696 chr3L 17120654 17120674 chr3L 17120730 17120750 4 76 2.0 2.0 2.0 1.3 96 chr3L 17120654 intron Rbp6 - chr3L 17120702 intron Rbp6 - chr3L 17120750 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-721 697 chr3L 17281206 17281235 chr3L 17281282 17281287 4 70 0.5 3.0 1.8 1.4 81 chr3L 17281206 intergenic not near genes chr3L 17281246 intergenic not near genes chr3L 17281287 intergenic not near genes chr3L_4_17280001 chr3L_17280001 RAL-721 698 chr3L 17331066 17331093 chr3L 17331156 17331174 4 88 0.5 2.5 1.5 1.6 108 chr3L 17331066 intergenic not near genes chr3L 17331120 intergenic not near genes chr3L 17331174 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-721 699 chr3L 17366749 17366770 chr3L 17368287 17368293 8 1535 12.5 23.5 18.0 0.4 1544 chr3L 17366749 intergenic CR45688 + chr3L 17367521 intergenic CR45688 +,Cad74A - chr3L 17368293 3` UTR Cad74A - chr3L_8_17365001 chr3L_17365001 RAL-721 700 chr3L 17367093 17367119 chr3L 17367172 17367199 8 78 2.0 4.0 3.0 2.0 106 chr3L 17367093 5` UTR CR45688 + chr3L 17367146 5` UTR CR45688 + chr3L 17367199 5` UTR CR45688 + chr3L_8_17365001 chr3L_17365001 RAL-721 701 chr3L 17415861 17415881 chr3L 17416174 17416199 4 317 7.0 4.5 5.8 0.6 338 chr3L 17415861 intron blot - chr3L 17416030 intron blot - chr3L 17416199 intron blot - chr3L_4_17415001 chr3L_17415001 RAL-721 702 chr3L 17516993 17517010 chr3L 17524547 17524568 412 6 7557 3.0 3.5 3.2 1.4 7575 chr3L 17516993 intron CG7564 + chr3L 17520780 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-721 703 chr3L 17608091 17608100 chr3L 17608168 17608179 5 78 2.0 3.0 2.5 1.4 88 chr3L 17608091 intron Eip74EF - chr3L 17608135 intron Eip74EF - chr3L 17608179 intron Eip74EF - chr3L_5_17605001 chr3L_17605001 RAL-721 704 chr3L 17619751 17619759 chr3L 17619852 17619857 4 100 0.5 0.0 0.2 3.3 106 chr3L 17619751 intergenic CG6259 -,Eip74EF - chr3L 17619804 intergenic CG6259 -,Eip74EF - chr3L 17619857 intergenic CG6259 - chr3L_4_17615001 chr3L_17615001 RAL-721 705 chr3L 17790621 17790631 chr3L 17790885 17790896 5 264 2.5 1.0 1.8 1.8 275 chr3L 17790621 intergenic CG42815 - chr3L 17790758 intergenic CG42815 - chr3L 17790896 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-721 706 chr3L 17837626 17837653 chr3L 17837713 17837741 7 88 5.0 6.0 5.5 1.1 115 chr3L 17837626 exon Grd + chr3L 17837684 intron Grd + chr3L 17837741 intron Grd + chr3L_7_17835001 chr3L_17835001 RAL-721 707 chr3L 17991575 17991586 chr3L 17991653 17991664 4 78 3.0 2.0 2.5 1.1 89 chr3L 17991575 intron Eip75B - chr3L 17991620 intron Eip75B - chr3L 17991664 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-721 708 chr3L 18008607 18008640 chr3L 18008711 18008734 8 102 2.5 3.0 2.8 2.1 127 chr3L 18008607 intron Eip75B - chr3L 18008670 intron Eip75B - chr3L 18008734 intron Eip75B - chr3L_8_18005001 chr3L_18005001 RAL-721 709 chr3L 18045044 18045047 chr3L 18045086 18045097 4 49 0.5 0.0 0.2 3.3 53 chr3L 18045044 intron Eip75B - chr3L 18045070 intron Eip75B - chr3L 18045097 intron Eip75B - chr3L_4_18045001 chr3L_18045001 RAL-721 710 chr3L 18066832 18066864 chr3L 18066957 18066990 11 124 1.5 2.5 2.0 3.7 158 chr3L 18066832 intergenic not near genes chr3L 18066911 intergenic not near genes chr3L 18066990 intergenic not near genes chr3L_11_18065001 chr3L_18065001 RAL-721 711 chr3L 18171863 18171890 chr3L 18171954 18171972 5 89 2.5 0.0 1.2 2.3 109 chr3L 18171863 intron W - chr3L 18171918 intron W - chr3L 18171972 intron W - chr3L_5_18170001 chr3L_18170001 RAL-721 712 chr3L 18210062 18210090 chr3L 18210370 18210397 8 308 0.5 3.5 2.0 2.7 335 chr3L 18210062 intergenic not near genes chr3L 18210230 intergenic not near genes chr3L 18210397 intergenic not near genes chr3L_8_18210001 chr3L_18210001 RAL-721 713 chr3L 18246967 18246993 chr3L 18247046 18247072 10 74 3.0 3.0 3.0 2.5 105 chr3L 18246967 intergenic not near genes chr3L 18247020 intergenic not near genes chr3L 18247072 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-721 714 chr3L 18248961 18248984 chr3L 18249055 18249082 8 97 0.5 1.5 1.0 4.0 121 chr3L 18248961 intergenic not near genes chr3L 18249022 intergenic not near genes chr3L 18249082 intergenic not near genes chr3L_8_18245001 chr3L_18245001 RAL-721 715 chr3L 18316328 18316355 chr3L 18316434 18316462 8 106 1.5 1.5 1.5 3.2 134 chr3L 18316328 intergenic not near genes chr3L 18316395 intergenic not near genes chr3L 18316462 intergenic not near genes chr3L_8_18315001 chr3L_18315001 RAL-721 716 chr3L 18359609 18359625 chr3L 18359693 18359717 4 90 4.0 1.0 2.5 1.1 108 chr3L 18359609 intergenic not near genes chr3L 18359663 intergenic not near genes chr3L 18359717 intergenic not near genes chr3L_4_18355001 chr3L_18355001 RAL-721 717 chr3L 18419415 18419436 chr3L 18419496 18419516 5 78 3.0 1.0 2.0 1.7 101 chr3L 18419415 intergenic not near genes chr3L 18419466 intergenic not near genes chr3L 18419516 intergenic not near genes chr3L_5_18415001 chr3L_18415001 RAL-721 718 chr3L 18546707 18546721 chr3L 18546801 18546815 6 94 1.5 2.5 2.0 2.0 108 chr3L 18546707 intergenic not near genes chr3L 18546761 intergenic not near genes chr3L 18546815 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-721 719 chr3L 18638582 18638605 chr3L 18638676 18638699 4 94 0.0 1.0 0.5 2.7 117 chr3L 18638582 intron MYPT-75D + chr3L 18638640 intron MYPT-75D + chr3L 18638699 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-721 720 chr3L 18710764 18710785 chr3L 18718716 18718737 Stalker2 4 7952 1.0 2.0 1.5 1.6 7973 chr3L 18710764 intergenic not near genes chr3L 18714750 intergenic not near genes chr3L 18718737 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-721 721 chr3L 18721776 18721792 chr3L 18721867 18721883 4 91 4.5 2.0 3.2 1.0 107 chr3L 18721776 intergenic CG12477 - chr3L 18721830 intergenic CG12477 - chr3L 18721883 intergenic CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-721 722 chr3L 18772419 18772439 chr3L 18781100 18781120 roo 7 8680 3.5 2.5 3.0 1.8 8701 chr3L 18772419 intron ftz-f1 - chr3L 18776770 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-721 723 chr3L 18833791 18833801 chr3L 18834942 18834963 1360 4 1156 0.5 4.0 2.2 1.2 1172 chr3L 18833791 intron Indy - chr3L 18834377 intron Indy - chr3L 18834963 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-721 724 chr3L 18929959 18929985 chr3L 18930043 18930063 8 78 1.5 2.5 2.0 2.7 104 chr3L 18929959 intron CG32204 - chr3L 18930011 intron CG32204 - chr3L 18930063 intron CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-721 725 chr3L 19008838 19008866 chr3L 19009175 19009204 jockey 5 335 0.5 4.0 2.2 1.6 366 chr3L 19008838 intron nkd - chr3L 19009021 intron nkd - chr3L 19009204 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-721 726 chr3L 19082038 19082071 chr3L 19082137 19082171 12 100 2.5 0.5 1.5 4.8 133 chr3L 19082038 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_12_19080001 chr3L_19080001 RAL-721 727 chr3L 19117062 19117075 chr3L 19124495 19124522 mdg1 6 7442 0.5 3.5 2.0 2.0 7460 chr3L 19117062 intron CG14082 - chr3L 19120792 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-721 728 chr3L 19127734 19127765 chr3L 19127821 19127841 8 86 2.0 3.0 2.5 2.3 107 chr3L 19127734 intron CG14082 - chr3L 19127788 intron CG14082 - chr3L 19127841 intron CG14082 - chr3L_8_19125001 chr3L_19125001 RAL-721 729 chr3L 19182388 19182407 chr3L 19182469 19182488 4 81 0.5 0.5 0.5 2.7 100 chr3L 19182388 intron fz2 - chr3L 19182438 intron fz2 - chr3L 19182488 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-721 730 chr3L 19184473 19184483 chr3L 19184563 19184568 4 88 6.5 2.0 4.2 0.8 95 chr3L 19184473 intron fz2 - chr3L 19184520 intron fz2 - chr3L 19184568 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-721 731 chr3L 19206808 19206835 chr3L 19206888 19206915 6 80 2.0 1.0 1.5 2.4 107 chr3L 19206808 intron fz2 - chr3L 19206862 intron fz2 - chr3L 19206915 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-721 732 chr3L 19208057 19208087 chr3L 19209430 19209461 Doc 10 1373 1.5 1.0 1.2 4.5 1404 chr3L 19208057 intron fz2 - chr3L 19208759 intron fz2 - chr3L 19209461 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-721 733 chr3L 19213341 19213354 chr3L 19213430 19213443 6 88 2.5 5.0 3.8 1.2 102 chr3L 19213341 intron fz2 - chr3L 19213392 intron fz2 - chr3L 19213443 intron fz2 - chr3L_6_19210001 chr3L_19210001 RAL-721 734 chr3L 19250018 19250050 chr3L 19250234 19250266 7 213 3.0 5.5 4.2 1.3 248 chr3L 19250018 intergenic not near genes chr3L 19250142 intergenic not near genes chr3L 19250266 intergenic not near genes chr3L_7_19250001 chr3L_19250001 RAL-721 735 chr3L 19393136 19393165 chr3L 19393227 19393254 5 91 0.0 0.5 0.2 4.2 118 chr3L 19393136 intron CG32206 - chr3L 19393195 intron CG32206 - chr3L 19393254 intron CG32206 - chr3L_5_19390001 chr3L_19390001 RAL-721 736 chr3L 19428499 19428510 chr3L 19428575 19428593 5 84 4.0 1.0 2.5 1.4 94 chr3L 19428499 intergenic not near genes chr3L 19428546 intergenic not near genes chr3L 19428593 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-721 737 chr3L 19488320 19488503 chr3L 19488493 19488582 7 106 0.0 0.0 0.0 7.0 262 chr3L 19488320 3` UTR,exon pncr009:3L -,CG32212 + chr3L 19488451 intergenic pncr009:3L -,CG32212 + chr3L 19488582 intergenic pncr009:3L -,CG32212 + chr3L_7_19485001 chr3L_19485001 RAL-721 738 chr3L 19527923 19527955 chr3L 19528002 19528033 8 78 1.5 1.0 1.2 3.6 110 chr3L 19527923 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528033 intergenic not near genes chr3L_8_19525001 chr3L_19525001 RAL-721 739 chr3L 19530957 19530987 chr3L 19531041 19531071 9 82 3.5 3.0 3.2 2.1 114 chr3L 19530957 intergenic not near genes chr3L 19531014 intergenic not near genes chr3L 19531071 intergenic not near genes chr3L_9_19530001 chr3L_19530001 RAL-721 740 chr3L 19538148 19538180 chr3L 19538332 19538364 4 184 1.0 0.5 0.8 2.2 216 chr3L 19538148 3` UTR Cpr76Bd + chr3L 19538256 3` UTR Cpr76Bd + chr3L 19538364 intergenic CG9279 -,Cpr76Bd + chr3L_4_19535001 chr3L_19535001 RAL-721 741 chr3L 19846618 19846632 chr3L 19846713 19846730 7 96 2.0 1.5 1.8 2.5 112 chr3L 19846618 intron Papss + chr3L 19846674 intron Papss + chr3L 19846730 intron Papss + chr3L_7_19845001 chr3L_19845001 RAL-721 742 chr3L 19981208 19981236 chr3L 19981288 19981316 5 80 1.0 2.5 1.8 1.8 108 chr3L 19981208 intergenic CG17732 + chr3L 19981262 intergenic CG17732 + chr3L 19981316 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-721 743 chr3L 20056273 20056287 chr3L 20056363 20056377 5 90 2.5 4.0 3.2 1.2 104 chr3L 20056273 intergenic not near genes chr3L 20056325 intergenic not near genes chr3L 20056377 intergenic not near genes chr3L_5_20055001 chr3L_20055001 RAL-721 744 chr3L 20113483 20113501 chr3L 20113577 20113596 4 95 1.0 0.5 0.8 2.2 113 chr3L 20113483 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113596 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-721 745 chr3L 20143088 20143116 chr3L 20143168 20143196 5 80 1.5 1.0 1.2 2.3 108 chr3L 20143088 intergenic not near genes chr3L 20143142 intergenic not near genes chr3L 20143196 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-721 746 chr3L 20315654 20315681 chr3L 20315732 20315758 5 73 1.0 4.0 2.5 1.4 104 chr3L 20315654 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315706 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315758 3` UTR,intron alphaSnap +,CR43875 - chr3L_5_20315001 chr3L_20315001 RAL-721 747 chr3L 20405574 20405604 chr3L 20405658 20405687 14 77 4.0 2.0 3.0 3.5 113 chr3L 20405574 intergenic not near genes chr3L 20405630 intergenic not near genes chr3L 20405687 intergenic not near genes chr3L_14_20405001 chr3L_20405001 RAL-721 748 chr3L 20476755 20476786 chr3L 20484354 20484385 springer 5 7599 0.5 1.0 0.8 2.8 7630 chr3L 20476755 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484385 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-721 749 chr3L 20548364 20548388 chr3L 20548452 20548465 8 87 3.5 1.0 2.2 2.5 101 chr3L 20548364 intergenic not near genes chr3L 20548414 intergenic not near genes chr3L 20548465 intergenic not near genes chr3L_8_20545001 chr3L_20545001 RAL-721 750 chr3L 20590069 20590095 chr3L 20590605 20590612 412 4 532 2.5 2.5 2.5 1.1 543 chr3L 20590069 intergenic not near genes chr3L 20590340 intergenic not near genes chr3L 20590612 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-721 751 chr3L 20849276 20849286 chr3L 20849355 20849365 4 79 3.5 0.5 2.0 1.3 89 chr3L 20849276 intron CG32432 - chr3L 20849320 intron CG32432 - chr3L 20849365 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-721 752 chr3L 20849720 20849748 chr3L 20850069 20850097 7 347 2.0 2.0 2.0 2.3 377 chr3L 20849720 intron CG32432 - chr3L 20849908 intron CG32432 - chr3L 20850097 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-721 753 chr3L 21014942 21014946 chr3L 21023396 21023427 Tirant 5 8474 3.0 4.0 3.5 1.1 8485 chr3L 21014942 intron skd - chr3L 21019184 intron skd - chr3L 21023427 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-721 754 chr3L 21151876 21151884 chr3L 21156960 21156966 flea 4 5083 2.0 1.0 1.5 1.6 5090 chr3L 21151876 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156966 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-721 755 chr3L 21160972 21160980 chr3L 21161068 21161071 6 94 6.0 5.5 5.8 0.9 99 chr3L 21160972 5` UTR Ac78C - chr3L 21161022 intron Ac78C - chr3L 21161071 intron Ac78C - chr3L_6_21160001 chr3L_21160001 RAL-721 756 chr3L 21160983 21160994 chr3L 21161066 21161090 4 90 3.5 5.5 4.5 0.7 107 chr3L 21160983 5` UTR Ac78C - chr3L 21161036 intron Ac78C - chr3L 21161090 intron Ac78C - chr3L_4_21160001 chr3L_21160001 RAL-721 757 chr3L 21243750 21243768 chr3L 21251312 21251331 412 4 7562 2.0 3.5 2.8 1.1 7581 chr3L 21243750 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-721 758 chr3L 21415138 21415163 chr3L 21415220 21415246 9 82 1.5 4.5 3.0 2.2 108 chr3L 21415138 intron rgn + chr3L 21415192 intron rgn + chr3L 21415246 intron rgn + chr3L_9_21415001 chr3L_21415001 RAL-721 759 chr3L 21639203 21639216 chr3L 21639281 21639295 4 78 4.0 2.5 3.2 1.0 92 chr3L 21639203 intergenic CG32444 +,CG32445 + chr3L 21639249 intergenic CG32445 +,CG32444 + chr3L 21639295 intergenic CG32445 +,CG32444 + chr3L_4_21635001 chr3L_21635001 RAL-721 760 chr3L 21776675 21776693 chr3L 21776761 21776779 5 87 2.0 2.5 2.2 1.6 104 chr3L 21776675 intron,intron CG42689 +,CG42552 + chr3L 21776727 intron,intron CG42689 +,CG42552 + chr3L 21776779 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-721 761 chr3L 21847426 21847456 chr3L 21847522 21847550 6 94 1.0 0.0 0.5 4.0 124 chr3L 21847426 intron mub + chr3L 21847488 intron mub + chr3L 21847550 intron mub + chr3L_6_21845001 chr3L_21845001 RAL-721 762 chr3L 21868579 21868594 chr3L 21868669 21868669 5 87 1.0 3.5 2.2 1.6 90 chr3L 21868579 intron mub + chr3L 21868624 intron mub + chr3L 21868669 intron mub + chr3L_5_21865001 chr3L_21865001 RAL-721 763 chr3L 22122173 22122200 chr3L 22122517 22122542 10 343 2.0 5.0 3.5 2.2 369 chr3L 22122173 5` UTR CR45236 + chr3L 22122358 intergenic CR45236 +,CR45235 + chr3L 22122542 intergenic CR45235 +,CR45236 + chr3L_10_22120001 chr3L_22120001 RAL-721 764 chr3L 22137532 22137554 chr3L 22137608 22137630 4 76 0.0 3.5 1.8 1.4 98 chr3L 22137532 intron olf413 + chr3L 22137581 intron olf413 + chr3L 22137630 intron olf413 + chr3L_4_22135001 chr3L_22135001 RAL-721 765 chr3L 22217704 22217737 chr3L 22218619 22218649 7 915 21.5 28.5 25.0 0.3 945 chr3L 22217704 intron olf413 + chr3L 22218176 intron olf413 + chr3L 22218649 intron olf413 + chr3L_7_22215001 chr3L_22215001 RAL-721 766 chr3L 22241309 22241323 chr3L 22241374 22241374 10 68 2.0 1.0 1.5 4.0 65 chr3L 22241309 intron olf413 + chr3L 22241342 intron olf413 + chr3L 22241374 intron olf413 + chr3L_10_22240001 chr3L_22240001 RAL-721 767 chr3L 22333042 22333071 chr3L 22333120 22333150 7 73 0.5 3.5 2.0 2.3 108 chr3L 22333042 intron Ten-m - chr3L 22333096 intron Ten-m - chr3L 22333150 intron Ten-m - chr3L_7_22330001 chr3L_22330001 RAL-721 768 chr3L 22434162 22434192 chr3L 22434285 22434310 8 122 2.0 3.5 2.8 2.1 148 chr3L 22434162 intergenic not near genes chr3L 22434236 intergenic not near genes chr3L 22434310 intergenic not near genes chr3L_8_22430001 chr3L_22430001 RAL-721 769 chr3L 22451583 22451599 chr3L 22451659 22451668 4 73 3.0 4.5 3.8 0.8 85 chr3L 22451583 intergenic not near genes chr3L 22451626 intergenic not near genes chr3L 22451668 intergenic not near genes chr3L_4_22450001 chr3L_22450001 RAL-721 770 chr3L 22522700 22522728 chr3L 22522777 22522801 8 76 0.5 2.0 1.2 3.6 101 chr3L 22522700 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522801 intergenic not near genes chr3L_8_22520001 chr3L_22520001 RAL-721 771 chr3L 22577636 22577649 chr3L 22582402 22582434 Doc 6 4777 2.5 1.5 2.0 2.0 4798 chr3L 22577636 intergenic not near genes chr3L 22580035 intergenic not near genes chr3L 22582434 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-721 772 chr3L 22617203 22617220 chr3L 22624645 22624672 blood 5 7449 2.5 0.5 1.5 2.0 7469 chr3L 22617203 intron CG14459 - chr3L 22620938 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-721 773 chr3L 22674434 22674456 chr3L 22674512 22674534 4 78 2.0 2.0 2.0 1.3 100 chr3L 22674434 intron CG14457 + chr3L 22674484 intron CG14457 + chr3L 22674534 intron CG14457 + chr3L_4_22670001 chr3L_22670001 RAL-721 774 chr3L 22759687 22759698 chr3L 22759775 22759780 6 89 3.0 0.5 1.8 2.1 93 chr3L 22759687 intron SPoCk + chr3L 22759734 intron SPoCk + chr3L 22759780 intron SPoCk + chr3L_6_22755001 chr3L_22755001 RAL-721 775 chr3L 22897209 22897223 chr3L 22897277 22897304 5 76 2.0 0.5 1.2 2.3 95 chr3L 22897209 intergenic not near genes chr3L 22897256 intergenic not near genes chr3L 22897304 intergenic not near genes chr3L_5_22895001 chr3L_22895001 RAL-721 776 chr3L 23042236 23042256 chr3L 23048986 23049009 gypsy6 8 6752 3.0 5.0 4.0 1.6 6773 chr3L 23042236 intergenic not near genes chr3L 23045622 intergenic not near genes chr3L 23049009 intergenic not near genes chr3L_8_23045001 chr3L_23045001 RAL-721 777 chr3L 23182269 23182295 chr3L 23182383 23182409 6 108 3.5 5.5 4.5 1.1 140 chr3L 23182269 intron CG34031 + chr3L 23182339 intron CG34031 + chr3L 23182409 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-721 778 chr3L 24168630 24168662 chr3L 24176389 24176410 ZAM 10 7756 1.0 3.5 2.2 3.1 7780 chr3L 24168630 intron Snap25 + chr3L 24172520 intron Snap25 + chr3L 24176410 intron Snap25 + chr3L_10_24170001 chr3L_24170001 RAL-721 779 chr3L 26717663 26717693 chr3L 26717739 26717769 4 74 1.5 1.5 1.5 1.6 106 chr3L 26717663 intergenic not near genes chr3L 26717716 intergenic not near genes chr3L 26717769 intergenic not near genes chr3L_4_26715001 chr3L_26715001 RAL-721 780 chr3R 2534137 2534167 chr3R 2541706 2541736 12 7563 11.5 8.5 10.0 1.1 7599 chr3R 2534137 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_12_2535001 chr3R_2535001 RAL-721 781 chr3R 2874323 2874346 chr3R 2874410 2874428 6 84 2.5 3.0 2.8 1.6 105 chr3R 2874323 intergenic not near genes chr3R 2874376 intergenic not near genes chr3R 2874428 intergenic not near genes chr3R_6_2870001 chr3R_2870001 RAL-721 782 chr3R 4063815 4063836 chr3R 4069092 4069108 6 5275 3.5 4.5 4.0 1.2 5293 chr3R 4063815 intergenic not near genes chr3R 4066462 intergenic not near genes chr3R 4069108 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-721 783 chr3R 4161550 4161569 chr3R 4161627 4161646 6 76 2.5 2.5 2.5 1.7 96 chr3R 4161550 3` UTR CG40198 - chr3R 4161598 exon CG40198 - chr3R 4161646 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-721 784 chr3R 4206078 4206094 chr3R 4211653 4211668 mdg3 4 5575 2.0 1.5 1.8 1.4 5590 chr3R 4206078 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211668 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-721 785 chr3R 4408408 4408442 chr3R 4412712 4412746 Juan 5 4301 1.0 1.5 1.2 2.3 4338 chr3R 4408408 intron CG32944 - chr3R 4410577 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-721 786 chr3R 4609545 4609580 chr3R 4610709 4610744 1360 8 1163 2.5 2.5 2.5 2.3 1199 chr3R 4609545 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-721 787 chr3R 4753239 4753258 chr3R 4757542 4757559 F-element 6 4302 7.5 3.5 5.5 0.9 4320 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755399 intron,intron atms +,CG44098 - chr3R 4757559 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-721 788 chr3R 4769161 4769191 chr3R 4769239 4769269 6 78 1.0 1.5 1.2 2.7 108 chr3R 4769161 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-721 789 chr3R 4861582 4861597 chr3R 4861658 4861674 4 70 3.5 7.0 5.2 0.6 92 chr3R 4861582 intron opa + chr3R 4861628 intron opa + chr3R 4861674 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-721 790 chr3R 4896301 4896326 chr3R 4896386 4896419 4 91 0.5 1.0 0.8 2.2 118 chr3R 4896301 intergenic CR45580 + chr3R 4896360 intergenic CR45580 + chr3R 4896419 5` UTR CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-721 791 chr3R 5193903 5193930 chr3R 5194016 5194047 6 113 3.5 1.5 2.5 1.7 144 chr3R 5193903 intron cno - chr3R 5193975 intron cno - chr3R 5194047 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-721 792 chr3R 5278090 5278111 chr3R 5278169 5278191 11 80 2.0 1.5 1.8 3.9 101 chr3R 5278090 intron mtd - chr3R 5278140 intron mtd - chr3R 5278191 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-721 793 chr3R 5385973 5386007 chr3R 5386144 5386172 8 170 1.5 7.0 4.2 1.5 199 chr3R 5385973 intron kkv - chr3R 5386072 intron kkv - chr3R 5386172 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-721 794 chr3R 5688792 5688814 chr3R 5688911 5688935 10 119 4.5 4.0 4.2 1.9 143 chr3R 5688792 intron plx + chr3R 5688864 intron plx + chr3R 5688935 intron plx + chr3R_10_5685001 chr3R_5685001 RAL-721 795 chr3R 5746022 5746034 chr3R 5746263 5746275 pogo 5 241 3.0 4.5 3.8 1.0 253 chr3R 5746022 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746275 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-721 796 chr3R 5822408 5822412 chr3R 5823575 5823579 1360 4 1167 2.0 6.0 4.0 0.8 1171 chr3R 5822408 3` UTR CG2023 - chr3R 5822994 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-721 797 chr3R 5989350 5989369 chr3R 5989419 5989431 5 74 1.5 0.5 1.0 2.5 81 chr3R 5989350 5` UTR CR44927 + chr3R 5989390 5` UTR CR44927 + chr3R 5989431 5` UTR CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-721 798 chr3R 6015965 6015990 chr3R 6024446 6024462 Tirant 5 8479 1.5 2.5 2.0 1.7 8497 chr3R 6015965 intergenic not near genes chr3R 6020214 intergenic not near genes chr3R 6024462 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-721 799 chr3R 6117419 6117443 chr3R 6117535 6117547 6 115 2.0 6.5 4.2 1.2 128 chr3R 6117419 intergenic not near genes chr3R 6117483 intergenic not near genes chr3R 6117547 intergenic not near genes chr3R_6_6115001 chr3R_6115001 RAL-721 800 chr3R 6206286 6206318 chr3R 6206503 6206535 BS 13 215 4.5 3.0 3.8 2.7 249 chr3R 6206286 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-721 801 chr3R 6343711 6343729 chr3R 6343814 6343832 5 103 3.5 1.0 2.2 1.6 121 chr3R 6343711 3` UTR CG10298 + chr3R 6343772 3` UTR CG10298 + chr3R 6343832 intergenic CG10298 +,CG17919 + chr3R_5_6340001 chr3R_6340001 RAL-721 802 chr3R 6461599 6461612 chr3R 6461679 6461692 5 80 0.0 1.5 0.8 2.8 93 chr3R 6461599 intergenic not near genes chr3R 6461646 intergenic not near genes chr3R 6461692 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-721 803 chr3R 6551113 6551136 chr3R 6551207 6551230 8 94 5.0 2.5 3.8 1.7 117 chr3R 6551113 intron dpr11 - chr3R 6551172 intron dpr11 - chr3R 6551230 intron dpr11 - chr3R_8_6550001 chr3R_6550001 RAL-721 804 chr3R 6639913 6639931 chr3R 6639991 6640008 5 77 6.0 0.0 3.0 1.2 95 chr3R 6639913 intergenic not near genes chr3R 6639960 intergenic not near genes chr3R 6640008 intergenic not near genes chr3R_5_6635001 chr3R_6635001 RAL-721 805 chr3R 6698013 6698039 chr3R 6698084 6698116 4 76 1.5 1.5 1.5 1.6 103 chr3R 6698013 intergenic not near genes chr3R 6698064 intergenic not near genes chr3R 6698116 intergenic not near genes chr3R_4_6695001 chr3R_6695001 RAL-721 806 chr3R 6737518 6737529 chr3R 6739287 6739314 Doc 6 1784 0.5 2.0 1.2 2.7 1796 chr3R 6737518 intron pb - chr3R 6738416 intron pb - chr3R 6739314 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-721 807 chr3R 6862221 6862252 chr3R 6862308 6862339 6 87 0.0 1.5 0.8 3.3 118 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-721 808 chr3R 6923585 6923595 chr3R 6923672 6923675 4 85 2.0 1.5 1.8 1.4 90 chr3R 6923585 intron Antp - chr3R 6923630 intron Antp - chr3R 6923675 intron Antp - chr3R_4_6920001 chr3R_6920001 RAL-721 809 chr3R 7103930 7103956 chr3R 7104029 7104055 8 96 7.0 2.0 4.5 1.5 125 chr3R 7103930 intron Alh - chr3R 7103992 intron Alh - chr3R 7104055 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-721 810 chr3R 7167385 7167420 chr3R 7167482 7167515 14 96 2.0 3.0 2.5 4.0 130 chr3R 7167385 intron sas + chr3R 7167450 intron sas + chr3R 7167515 intron sas + chr3R_14_7165001 chr3R_7165001 RAL-721 811 chr3R 7601958 7601978 chr3R 7602038 7602058 5 80 2.5 2.0 2.2 1.6 100 chr3R 7601958 intron CG34127 - chr3R 7602008 intron CG34127 - chr3R 7602058 intron CG34127 - chr3R_5_7600001 chr3R_7600001 RAL-721 812 chr3R 7745600 7745615 chr3R 7745678 7745691 5 78 2.0 1.0 1.5 2.0 91 chr3R 7745600 intergenic not near genes chr3R 7745646 intergenic not near genes chr3R 7745691 intergenic not near genes chr3R_5_7745001 chr3R_7745001 RAL-721 813 chr3R 8090274 8090299 chr3R 8090451 8090476 5 177 3.0 0.5 1.8 1.8 202 chr3R 8090274 5` UTR CR44330 + chr3R 8090375 intergenic CR44330 + chr3R 8090476 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-721 814 chr3R 8101766 8101784 chr3R 8104847 8104868 G2 4 3083 3.0 3.0 3.0 1.0 3102 chr3R 8101766 exon CG7900 + chr3R 8103317 intron CG7900 + chr3R 8104868 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-721 815 chr3R 8182667 8182689 chr3R 8182761 8182783 10 94 0.5 2.5 1.5 4.0 116 chr3R 8182667 intergenic not near genes chr3R 8182725 intergenic not near genes chr3R 8182783 intergenic not near genes chr3R_10_8180001 chr3R_8180001 RAL-721 816 chr3R 8188384 8188508 chr3R 8188469 8188599 6 86 1.0 1.0 1.0 3.0 215 chr3R 8188384 intergenic not near genes chr3R 8188492 intergenic not near genes chr3R 8188599 intergenic not near genes chr3R_6_8185001 chr3R_8185001 RAL-721 817 chr3R 8207557 8207588 chr3R 8208402 8208422 F-element 4 842 3.0 4.0 3.5 0.9 865 chr3R 8207557 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-721 818 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568288 13.0 16.5 14.8 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-721 819 chr3R 8403008 8403040 chr3R 8412172 8412202 roo 16 9163 2.5 1.0 1.8 5.7 9194 chr3R 8403008 intron CG45263 - chr3R 8407605 intron CG45263 - chr3R 8412202 intron CG45263 - chr3R_16_8405001 chr3R_8405001 RAL-721 820 chr3R 8418672 8418691 chr3R 8418776 8418792 8 104 1.0 1.5 1.2 3.6 120 chr3R 8418672 intron CG45263 - chr3R 8418732 intron CG45263 - chr3R 8418792 intron CG45263 - chr3R_8_8415001 chr3R_8415001 RAL-721 821 chr3R 8537823 8537856 chr3R 8537906 8537936 16 82 3.5 2.5 3.0 4.0 113 chr3R 8537823 intergenic not near genes chr3R 8537880 intergenic not near genes chr3R 8537936 intergenic not near genes chr3R_16_8535001 chr3R_8535001 RAL-721 822 chr3R 8554505 8554536 chr3R 8554885 8554917 9 376 0.5 1.0 0.8 5.0 412 chr3R 8554505 intergenic not near genes chr3R 8554711 intergenic not near genes chr3R 8554917 intergenic not near genes chr3R_9_8550001 chr3R_8550001 RAL-721 823 chr3R 8570480 8570509 chr3R 8575116 8575145 HMS-Beagle 8 4634 0.5 1.0 0.8 4.4 4665 chr3R 8570480 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-721 824 chr3R 8576160 8576170 chr3R 8576331 8576337 6 170 2.5 1.5 2.0 2.0 177 chr3R 8576160 intergenic not near genes chr3R 8576248 intergenic not near genes chr3R 8576337 intergenic not near genes chr3R_6_8575001 chr3R_8575001 RAL-721 825 chr3R 8601784 8601797 chr3R 8610918 8610933 roo 9 9144 4.0 2.5 3.2 2.1 9149 chr3R 8601784 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610933 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-721 826 chr3R 8631510 8631544 chr3R 8631614 8631648 11 102 0.5 1.5 1.0 5.5 138 chr3R 8631510 intergenic not near genes chr3R 8631579 intergenic not near genes chr3R 8631648 intergenic not near genes chr3R_11_8630001 chr3R_8630001 RAL-721 827 chr3R 8707364 8707386 chr3R 8709804 8709826 jockey 10 2440 5.5 3.0 4.2 1.9 2462 chr3R 8707364 intergenic not near genes chr3R 8708595 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_10_8705001 chr3R_8705001 RAL-721 828 chr3R 8740106 8740127 chr3R 8740412 8740433 4 306 1.0 6.0 3.5 0.9 327 chr3R 8740106 intron CG9801 - chr3R 8740270 intron CG9801 - chr3R 8740433 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-721 829 chr3R 9141144 9141168 chr3R 9141228 9141245 7 83 1.0 3.0 2.0 2.3 101 chr3R 9141144 intron pum - chr3R 9141194 intron pum - chr3R 9141245 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-721 830 chr3R 9251445 9251458 chr3R 9251520 9251538 4 79 1.5 3.0 2.2 1.2 93 chr3R 9251445 intergenic CG8420 +,St2 + chr3R 9251492 intergenic CG8420 +,St2 + chr3R 9251538 intergenic CG8420 +,St2 + chr3R_4_9250001 chr3R_9250001 RAL-721 831 chr3R 9278796 9278804 chr3R 9284036 9284064 Rt1a 5 5253 0.5 4.5 2.5 1.4 5268 chr3R 9278796 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284064 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-721 832 chr3R 9319575 9319600 chr3R 9320009 9320035 jockey 6 435 2.0 2.5 2.2 1.9 460 chr3R 9319575 intron CG8861 - chr3R 9319805 intron CG8861 - chr3R 9320035 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-721 833 chr3R 9524017 9524042 chr3R 9524105 9524129 7 87 1.0 1.0 1.0 3.5 112 chr3R 9524017 intron CG8176 + chr3R 9524073 intron CG8176 + chr3R 9524129 intron CG8176 + chr3R_7_9520001 chr3R_9520001 RAL-721 834 chr3R 9599814 9599843 chr3R 9599988 9599993 7 167 2.5 1.5 2.0 2.3 179 chr3R 9599814 intron CG8312 + chr3R 9599904 intron CG8312 + chr3R 9599993 intron CG8312 + chr3R_7_9595001 chr3R_9595001 RAL-721 835 chr3R 9608656 9608686 chr3R 9608922 9608952 8 266 2.5 5.0 3.8 1.7 296 chr3R 9608656 intron CG8312 + chr3R 9608804 intron CG8312 + chr3R 9608952 intron CG8312 + chr3R_8_9605001 chr3R_9605001 RAL-721 836 chr3R 9836876 9836900 chr3R 9836956 9836988 8 81 1.0 3.0 2.0 2.7 112 chr3R 9836876 intron Teh1 - chr3R 9836932 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_8_9835001 chr3R_9835001 RAL-721 837 chr3R 10174141 10174150 chr3R 10174223 10174232 6 81 4.5 2.5 3.5 1.3 91 chr3R 10174141 intron CG12814 - chr3R 10174186 intron CG12814 - chr3R 10174232 intron CG12814 - chr3R_6_10170001 chr3R_10170001 RAL-721 838 chr3R 10394077 10394097 chr3R 10394172 10394193 6 98 0.5 1.5 1.0 3.0 116 chr3R 10394077 intron cwo + chr3R 10394135 intron cwo + chr3R 10394193 intron cwo + chr3R_6_10390001 chr3R_10390001 RAL-721 839 chr3R 10594607 10594624 chr3R 10594680 10594706 8 83 3.0 3.0 3.0 2.0 99 chr3R 10594607 intron hth - chr3R 10594656 intron hth - chr3R 10594706 intron hth - chr3R_8_10590001 chr3R_10590001 RAL-721 840 chr3R 10720561 10720590 chr3R 10720652 10720681 10 91 1.0 3.0 2.0 3.3 120 chr3R 10720561 intergenic not near genes chr3R 10720621 intergenic not near genes chr3R 10720681 intergenic not near genes chr3R_10_10720001 chr3R_10720001 RAL-721 841 chr3R 10785813 10785829 chr3R 10785892 10785908 4 79 2.0 1.5 1.8 1.4 95 chr3R 10785813 intron Rbp1 + chr3R 10785860 intron Rbp1 + chr3R 10785908 intron Rbp1 + chr3R_4_10785001 chr3R_10785001 RAL-721 842 chr3R 10836593 10836613 chr3R 10836678 10836699 7 86 2.0 3.0 2.5 2.0 106 chr3R 10836593 intron Cad86C + chr3R 10836646 intron Cad86C + chr3R 10836699 intron Cad86C + chr3R_7_10835001 chr3R_10835001 RAL-721 843 chr3R 10919685 10919715 chr3R 10919763 10919793 5 76 3.0 0.0 1.5 2.0 108 chr3R 10919685 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-721 844 chr3R 11030090 11030098 chr3R 11030184 11030192 4 94 1.0 2.5 1.8 1.4 102 chr3R 11030090 intron CG34114 + chr3R 11030141 intron CG34114 + chr3R 11030192 intron CG34114 + chr3R_4_11030001 chr3R_11030001 RAL-721 845 chr3R 11075803 11075828 chr3R 11075879 11075905 4 76 1.0 1.0 1.0 2.0 102 chr3R 11075803 intergenic not near genes chr3R 11075854 intergenic not near genes chr3R 11075905 intergenic not near genes chr3R_4_11075001 chr3R_11075001 RAL-721 846 chr3R 11078947 11078980 chr3R 11079027 11079060 11 78 2.5 2.0 2.2 3.4 113 chr3R 11078947 intergenic not near genes chr3R 11079004 intergenic not near genes chr3R 11079060 intergenic not near genes chr3R_11_11075001 chr3R_11075001 RAL-721 847 chr3R 11130805 11130833 chr3R 11130977 11131005 5 172 2.0 1.5 1.8 1.8 200 chr3R 11130805 intergenic not near genes chr3R 11130905 intergenic not near genes chr3R 11131005 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-721 848 chr3R 11307189 11307218 chr3R 11307275 11307304 7 84 1.0 2.0 1.5 2.8 115 chr3R 11307189 intergenic not near genes chr3R 11307246 intergenic not near genes chr3R 11307304 intergenic not near genes chr3R_7_11305001 chr3R_11305001 RAL-721 849 chr3R 11518823 11518834 chr3R 11518914 11518920 5 90 3.5 5.5 4.5 0.9 97 chr3R 11518823 intergenic not near genes chr3R 11518872 intergenic not near genes chr3R 11518920 intergenic not near genes chr3R_5_11515001 chr3R_11515001 RAL-721 850 chr3R 11684372 11684388 chr3R 11684570 11684586 7 197 3.0 2.0 2.5 2.0 214 chr3R 11684372 intergenic CG6830 -,CG6834 - chr3R 11684479 intergenic CG6830 -,CG6834 - chr3R 11684586 intergenic CG6834 -,CG6830 - chr3R_7_11680001 chr3R_11680001 RAL-721 851 chr3R 11684637 11684666 chr3R 11687762 11687790 9 3125 1.5 2.5 2.0 3.0 3153 chr3R 11684637 intergenic CG6834 -,CG6830 - chr3R 11686214 exon CG6834 - chr3R 11687790 exon CG6834 - chr3R_9_11685001 chr3R_11685001 RAL-721 852 chr3R 11708639 11708652 chr3R 11708847 11708860 4 208 3.5 0.5 2.0 1.3 221 chr3R 11708639 intergenic not near genes chr3R 11708750 intergenic not near genes chr3R 11708860 intergenic not near genes chr3R_4_11705001 chr3R_11705001 RAL-721 853 chr3R 11853439 11853471 chr3R 11853584 11853633 4 150 2.0 0.0 1.0 2.0 194 chr3R 11853439 intron CG6959 - chr3R 11853536 intron CG6959 - chr3R 11853633 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-721 854 chr3R 12022889 12022914 chr3R 12025064 12025091 pogo 4 2175 1.0 2.5 1.8 1.4 2202 chr3R 12022889 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025091 intergenic not near genes chr3R_4_12020001 chr3R_12020001 RAL-721 855 chr3R 12045179 12045201 chr3R 12045253 12045261 5 72 2.0 1.0 1.5 2.0 82 chr3R 12045179 intergenic not near genes chr3R 12045220 intergenic not near genes chr3R 12045261 intergenic not near genes chr3R_5_12045001 chr3R_12045001 RAL-721 856 chr3R 12344142 12344155 chr3R 12344218 12344228 4 74 1.0 3.0 2.0 1.3 86 chr3R 12344142 intergenic not near genes chr3R 12344185 intergenic not near genes chr3R 12344228 intergenic not near genes chr3R_4_12340001 chr3R_12340001 RAL-721 857 chr3R 12392892 12393103 chr3R 12392992 12393188 15 85 2.0 3.0 2.5 4.3 296 chr3R 12392892 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393040 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393188 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_15_12390001 chr3R_12390001 RAL-721 858 chr3R 12542971 12542998 chr3R 12543068 12543096 4 93 1.5 0.0 0.8 2.2 125 chr3R 12542971 intron Octbeta3R - chr3R 12543034 intron Octbeta3R - chr3R 12543096 intron Octbeta3R - chr3R_4_12540001 chr3R_12540001 RAL-721 859 chr3R 12619890 12619910 chr3R 12619972 12619976 6 79 1.0 4.0 2.5 1.7 86 chr3R 12619890 intergenic CR44942 - chr3R 12619933 intergenic not near genes chr3R 12619976 intergenic not near genes chr3R_6_12615001 chr3R_12615001 RAL-721 860 chr3R 12807166 12807189 chr3R 12807984 12808007 5 818 16.5 20.5 18.5 0.3 841 chr3R 12807166 intergenic not near genes chr3R 12807586 intergenic not near genes chr3R 12808007 intergenic not near genes chr3R_5_12805001 chr3R_12805001 RAL-721 861 chr3R 12825836 12825853 chr3R 12825912 12825931 4 78 1.0 2.5 1.8 1.4 95 chr3R 12825836 intergenic not near genes chr3R 12825884 intergenic not near genes chr3R 12825931 intergenic not near genes chr3R_4_12825001 chr3R_12825001 RAL-721 862 chr3R 12866489 12866513 chr3R 12866640 12866663 9 149 1.5 1.0 1.2 4.1 174 chr3R 12866489 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866663 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-721 863 chr3R 12916118 12916141 chr3R 12916473 12916496 8 351 5.0 4.0 4.5 1.5 378 chr3R 12916118 5` UTR beat-Vb + chr3R 12916307 intron beat-Vb + chr3R 12916496 intron beat-Vb + chr3R_8_12915001 chr3R_12915001 RAL-721 864 chr3R 12920171 12920185 chr3R 12925374 12925388 copia 4 5201 3.5 7.5 5.5 0.6 5217 chr3R 12920171 intron beat-Vb + chr3R 12922780 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-721 865 chr3R 13104418 13104421 chr3R 21907534 21907536 6 8803116 16.0 16.5 16.2 0.3 8803118 chr3R 13104418 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_6_17505001 chr3R_17505001 RAL-721 866 chr3R 13111680 13111691 chr3R 13111741 13111769 5 75 1.5 3.5 2.5 1.4 89 chr3R 13111680 intron timeout + chr3R 13111724 intron timeout + chr3R 13111769 intron timeout + chr3R_5_13110001 chr3R_13110001 RAL-721 867 chr3R 13143050 13143066 chr3R 13148626 13148642 mdg3 5 5576 4.5 7.0 5.8 0.7 5592 chr3R 13143050 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145846 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-721 868 chr3R 13391636 13391664 chr3R 13391708 13391742 6 76 1.5 1.5 1.5 2.4 106 chr3R 13391636 intron CCHa2 - chr3R 13391689 intron CCHa2 - chr3R 13391742 intron CCHa2 - chr3R_6_13390001 chr3R_13390001 RAL-721 869 chr3R 13394672 13394699 chr3R 13395020 13395043 11 345 3.5 3.5 3.5 2.4 371 chr3R 13394672 intron CCHa2 - chr3R 13394858 intron CCHa2 - chr3R 13395043 intron CCHa2 - chr3R_11_13390001 chr3R_13390001 RAL-721 870 chr3R 13525197 13525210 chr3R 13525282 13525312 5 98 4.0 2.0 3.0 1.2 115 chr3R 13525197 intergenic not near genes chr3R 13525254 intergenic not near genes chr3R 13525312 intergenic not near genes chr3R_5_13525001 chr3R_13525001 RAL-721 871 chr3R 13554163 13554172 chr3R 13554241 13554245 4 77 4.5 8.0 6.2 0.6 82 chr3R 13554163 intergenic not near genes chr3R 13554204 intergenic not near genes chr3R 13554245 intergenic not near genes chr3R_4_13550001 chr3R_13550001 RAL-721 872 chr3R 13598087 13598112 chr3R 13598165 13598173 7 75 1.0 4.0 2.5 2.0 86 chr3R 13598087 intergenic not near genes chr3R 13598130 intergenic not near genes chr3R 13598173 intergenic not near genes chr3R_7_13595001 chr3R_13595001 RAL-721 873 chr3R 13625702 13625725 chr3R 13625781 13625805 4 80 1.5 0.5 1.0 2.0 103 chr3R 13625702 intergenic not near genes chr3R 13625754 intergenic not near genes chr3R 13625805 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-721 874 chr3R 13672953 13672962 chr3R 13673025 13673040 4 76 2.0 3.0 2.5 1.1 87 chr3R 13672953 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673040 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-721 875 chr3R 13672966 13672974 chr3R 13673019 13673050 5 73 1.5 3.0 2.2 1.6 84 chr3R 13672966 intron Task6 - chr3R 13673008 intron Task6 - chr3R 13673050 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-721 876 chr3R 13830758 13830772 chr3R 13830922 13830927 4 162 3.5 3.5 3.5 0.9 169 chr3R 13830758 intergenic not near genes chr3R 13830842 intergenic not near genes chr3R 13830927 intergenic not near genes chr3R_4_13830001 chr3R_13830001 RAL-721 877 chr3R 13847500 13847531 chr3R 13847573 13847607 6 74 0.0 2.0 1.0 3.0 107 chr3R 13847500 intergenic not near genes chr3R 13847554 intergenic not near genes chr3R 13847607 intergenic not near genes chr3R_6_13845001 chr3R_13845001 RAL-721 878 chr3R 13863694 13863712 chr3R 13863778 13863800 6 86 2.0 3.0 2.5 1.7 106 chr3R 13863694 intergenic not near genes chr3R 13863747 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-721 879 chr3R 13885006 13885032 chr3R 13885221 13885247 9 215 2.0 2.0 2.0 3.0 241 chr3R 13885006 intergenic not near genes chr3R 13885126 intergenic not near genes chr3R 13885247 intergenic not near genes chr3R_9_13885001 chr3R_13885001 RAL-721 880 chr3R 14021656 14021675 chr3R 14023470 14023492 S-element 6 1813 1.5 1.5 1.5 2.4 1836 chr3R 14021656 intron rdx - chr3R 14022574 intron rdx - chr3R 14023492 intron rdx - chr3R_6_14020001 chr3R_14020001 RAL-721 881 chr3R 14174955 14174992 chr3R 14175042 14175063 8 83 1.5 2.0 1.8 2.9 108 chr3R 14174955 3` UTR Dop1R1 - chr3R 14175009 3` UTR Dop1R1 - chr3R 14175063 3` UTR Dop1R1 - chr3R_8_14175001 chr3R_14175001 RAL-721 882 chr3R 14208710 14208730 chr3R 14208856 14208866 8 145 3.5 5.0 4.2 1.5 156 chr3R 14208710 intron Dop1R1 - chr3R 14208788 intron Dop1R1 - chr3R 14208866 intron Dop1R1 - chr3R_8_14205001 chr3R_14205001 RAL-721 883 chr3R 14327696 14327722 chr3R 14327772 14327783 5 74 0.5 0.5 0.5 3.3 87 chr3R 14327696 3` UTR CG3321 + chr3R 14327740 intergenic CG3321 +,spn-B + chr3R 14327783 intergenic CG3321 +,spn-B + chr3R_5_14325001 chr3R_14325001 RAL-721 884 chr3R 14704387 14704413 chr3R 14704464 14704490 5 77 1.0 2.5 1.8 1.8 103 chr3R 14704387 intron kibra - chr3R 14704438 intron kibra - chr3R 14704490 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-721 885 chr3R 14838026 14838037 chr3R 14838116 14838127 5 90 8.5 3.0 5.8 0.7 101 chr3R 14838026 intron btsz - chr3R 14838076 intron btsz - chr3R 14838127 intron btsz - chr3R_5_14835001 chr3R_14835001 RAL-721 886 chr3R 14838043 14838055 chr3R 14838113 14838144 6 84 5.5 1.5 3.5 1.3 101 chr3R 14838043 intron btsz - chr3R 14838094 intron btsz - chr3R 14838144 intron btsz - chr3R_6_14835001 chr3R_14835001 RAL-721 887 chr3R 14876366 14876385 chr3R 14876713 14876747 6 358 0.0 2.5 1.2 2.7 381 chr3R 14876366 intergenic not near genes chr3R 14876556 intergenic not near genes chr3R 14876747 intergenic not near genes chr3R_6_14875001 chr3R_14875001 RAL-721 888 chr3R 15132057 15132086 chr3R 15135117 15135146 Juan 6 3059 4.0 7.0 5.5 0.9 3089 chr3R 15132057 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135146 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-721 889 chr3R 15155513 15155544 chr3R 15155600 15155631 8 82 1.0 0.0 0.5 5.3 118 chr3R 15155513 intron Gyc88E + chr3R 15155572 intron Gyc88E + chr3R 15155631 intron Gyc88E + chr3R_8_15155001 chr3R_15155001 RAL-721 890 chr3R 15156615 15156635 chr3R 15156696 15156715 5 79 1.0 0.0 0.5 3.3 100 chr3R 15156615 intron Gyc88E + chr3R 15156665 intron Gyc88E + chr3R 15156715 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-721 891 chr3R 15223281 15223303 chr3R 15223359 15223380 8 78 0.0 0.5 0.2 6.7 99 chr3R 15223281 intergenic CG31344 -,Rpb7 - chr3R 15223330 intergenic CG31344 -,Rpb7 - chr3R 15223380 3` UTR CG31344 - chr3R_8_15220001 chr3R_15220001 RAL-721 892 chr3R 15521962 15521991 chr3R 15522053 15522082 7 89 1.0 3.5 2.2 2.2 120 chr3R 15521962 intergenic not near genes chr3R 15522022 intergenic not near genes chr3R 15522082 intergenic not near genes chr3R_7_15520001 chr3R_15520001 RAL-721 893 chr3R 15547431 15547457 chr3R 15547521 15547543 6 88 1.5 3.5 2.5 1.7 112 chr3R 15547431 5` UTR CG6045 - chr3R 15547487 intron CG6045 - chr3R 15547543 5` UTR CG6045 - chr3R_6_15545001 chr3R_15545001 RAL-721 894 chr3R 15601164 15601196 chr3R 15608685 15608718 412 9 7521 1.0 5.0 3.0 2.2 7554 chr3R 15601164 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-721 895 chr3R 15691183 15691330 chr3R 15691288 15691415 5 101 0.5 0.5 0.5 3.3 232 chr3R 15691183 intergenic not near genes chr3R 15691299 intergenic not near genes chr3R 15691415 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-721 896 chr3R 16225097 16225113 chr3R 16225173 16225198 4 83 1.5 1.5 1.5 1.6 101 chr3R 16225097 intergenic not near genes chr3R 16225148 intergenic not near genes chr3R 16225198 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-721 897 chr3R 16320777 16320810 chr3R 16321150 16321184 5 373 0.5 1.5 1.0 2.5 407 chr3R 16320777 intron Sulf1 - chr3R 16320980 intron Sulf1 - chr3R 16321184 intron Sulf1 - chr3R_5_16320001 chr3R_16320001 RAL-721 898 chr3R 16472583 16472604 chr3R 16472658 16472662 5 72 5.5 3.5 4.5 0.9 79 chr3R 16472583 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-721 899 chr3R 16582907 16582917 chr3R 16582986 16582996 4 79 1.5 2.0 1.8 1.4 89 chr3R 16582907 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16582996 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-721 900 chr3R 16756325 16756336 chr3R 16762515 16762526 diver 7 6189 5.0 4.0 4.5 1.3 6201 chr3R 16756325 intron bxd - chr3R 16759426 intron bxd - chr3R 16762526 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-721 901 chr3R 16774210 16774220 chr3R 16774316 16774325 5 105 0.5 4.0 2.2 1.6 115 chr3R 16774210 intergenic not near genes chr3R 16774268 intergenic not near genes chr3R 16774325 intergenic not near genes chr3R_5_16770001 chr3R_16770001 RAL-721 902 chr3R 16849725 16849739 chr3R 16849826 16849834 5 100 5.5 4.0 4.8 0.9 109 chr3R 16849725 intron iab-8 - chr3R 16849780 intron iab-8 - chr3R 16849834 intron iab-8 - chr3R_5_16845001 chr3R_16845001 RAL-721 903 chr3R 17067504 17067536 chr3R 17067587 17067603 6 80 1.5 1.0 1.2 2.7 99 chr3R 17067504 intron Dad + chr3R 17067554 intron Dad + chr3R 17067603 intron Dad + chr3R_6_17065001 chr3R_17065001 RAL-721 904 chr3R 17138850 17138876 chr3R 17138940 17138966 5 89 0.0 1.0 0.5 3.3 116 chr3R 17138850 3` UTR CG5255 + chr3R 17138908 intergenic CG5255 +,CG5265 + chr3R 17138966 intergenic CG5265 +,CG5255 + chr3R_5_17135001 chr3R_17135001 RAL-721 905 chr3R 17214025 17214057 chr3R 17214101 17214112 4 71 1.0 1.0 1.0 2.0 87 chr3R 17214025 intergenic not near genes chr3R 17214068 intergenic not near genes chr3R 17214112 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-721 906 chr3R 17259527 17259546 chr3R 17259606 17259624 6 76 1.5 6.5 4.0 1.2 97 chr3R 17259527 intron beat-IIb - chr3R 17259576 intron beat-IIb - chr3R 17259624 intron beat-IIb - chr3R_6_17255001 chr3R_17255001 RAL-721 907 chr3R 17294660 17294674 chr3R 17295088 17295102 BS 5 428 4.0 0.0 2.0 1.7 442 chr3R 17294660 intergenic not near genes chr3R 17294881 intergenic not near genes chr3R 17295102 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-721 908 chr3R 17374682 17374691 chr3R 17380799 17380809 4 6117 8.5 16.0 12.2 0.3 6127 chr3R 17374682 intergenic Brf - chr3R 17377746 intron Brf - chr3R 17380809 intron,intron Brf -,lute + chr3R_4_17375001 chr3R_17375001 RAL-721 909 chr3R 17426795 17426809 chr3R 17426860 17426864 7 68 1.5 0.5 1.0 3.5 69 chr3R 17426795 intron CG5873 + chr3R 17426830 intron CG5873 + chr3R 17426864 intron CG5873 + chr3R_7_17425001 chr3R_17425001 RAL-721 910 chr3R 17461204 17461229 chr3R 17461279 17461311 4 80 1.5 2.5 2.0 1.3 107 chr3R 17461204 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-721 911 chr3R 17466795 17466824 chr3R 17466884 17466897 7 83 3.5 1.5 2.5 2.0 102 chr3R 17466795 intergenic not near genes chr3R 17466846 intergenic not near genes chr3R 17466897 intergenic not near genes chr3R_7_17465001 chr3R_17465001 RAL-721 912 chr3R 17638318 17638336 chr3R 17638804 17638821 roo 5 486 2.5 0.5 1.5 2.0 503 chr3R 17638318 intron CG43175 + chr3R 17638570 intron CG43175 + chr3R 17638821 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-721 913 chr3R 17923145 17923152 chr3R 17923229 17923234 4 84 5.5 4.0 4.8 0.7 89 chr3R 17923145 intron cpo + chr3R 17923190 intron cpo + chr3R 17923234 intron cpo + chr3R_4_17920001 chr3R_17920001 RAL-721 914 chr3R 17923160 17923175 chr3R 17923225 17923249 7 80 2.5 4.0 3.2 1.7 89 chr3R 17923160 intron cpo + chr3R 17923204 intron cpo + chr3R 17923249 intron cpo + chr3R_7_17920001 chr3R_17920001 RAL-721 915 chr3R 17925851 17925889 chr3R 17927318 17927356 hobo 6 1461 2.5 5.0 3.8 1.2 1505 chr3R 17925851 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-721 916 chr3R 18204987 18205012 chr3R 18205066 18205078 7 77 0.5 5.0 2.8 1.8 91 chr3R 18204987 intron CG7985 + chr3R 18205032 intron CG7985 + chr3R 18205078 intron CG7985 + chr3R_7_18205001 chr3R_18205001 RAL-721 917 chr3R 18606501 18606528 chr3R 18610734 18610760 F-element 5 4231 3.0 0.5 1.8 1.8 4259 chr3R 18606501 intron,intron qin +,CG14304 - chr3R 18608630 intron,intron qin +,CG14304 - chr3R 18610760 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-721 918 chr3R 18739752 18739781 chr3R 18739824 18739859 8 74 2.5 1.0 1.8 2.9 107 chr3R 18739752 intron Mekk1 - chr3R 18739806 intron Mekk1 - chr3R 18739859 intron Mekk1 - chr3R_8_18735001 chr3R_18735001 RAL-721 919 chr3R 18763058 18763086 chr3R 18763158 18763171 5 97 4.5 1.5 3.0 1.2 113 chr3R 18763058 intron CG7720 - chr3R 18763114 intron CG7720 - chr3R 18763171 intron CG7720 - chr3R_5_18760001 chr3R_18760001 RAL-721 920 chr3R 18812074 18812102 chr3R 18812152 18812180 6 78 3.0 1.5 2.2 1.9 106 chr3R 18812074 intron CG18208 - chr3R 18812127 intron CG18208 - chr3R 18812180 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-721 921 chr3R 18853777 18853793 chr3R 18853862 18853876 4 82 2.0 2.0 2.0 1.3 99 chr3R 18853777 intergenic not near genes chr3R 18853826 intergenic not near genes chr3R 18853876 intergenic not near genes chr3R_4_18850001 chr3R_18850001 RAL-721 922 chr3R 19140267 19140300 chr3R 19140715 19140747 10 448 2.5 3.5 3.0 2.5 480 chr3R 19140267 3` UTR Ppcs - chr3R 19140507 3` UTR Ppcs - chr3R 19140747 3` UTR Ppcs - chr3R_10_19140001 chr3R_19140001 RAL-721 923 chr3R 19148733 19148763 chr3R 19148816 19148844 5 82 4.5 3.5 4.0 1.0 111 chr3R 19148733 3` UTR CG5835 - chr3R 19148788 3` UTR CG5835 - chr3R 19148844 3` UTR CG5835 - chr3R_5_19145001 chr3R_19145001 RAL-721 924 chr3R 19282315 19282323 chr3R 19282389 19282399 6 75 0.5 2.0 1.2 2.7 84 chr3R 19282315 intergenic not near genes chr3R 19282357 intergenic not near genes chr3R 19282399 intergenic not near genes chr3R_6_19280001 chr3R_19280001 RAL-721 925 chr3R 19490443 19490470 chr3R 19490532 19490559 11 88 4.5 7.0 5.8 1.6 116 chr3R 19490443 intron,intron Dys +,CG15025 - chr3R 19490501 intron,intron Dys +,CG15025 - chr3R 19490559 intron,intron Dys +,CG15025 - chr3R_11_19490001 chr3R_19490001 RAL-721 926 chr3R 19648290 19648318 chr3R 19650398 19650426 5 2113 18.0 13.5 15.8 0.3 2136 chr3R 19648290 exon CG6195 - chr3R 19649358 intron CG31220 + chr3R 19650426 exon CG31220 + chr3R_5_19645001 chr3R_19645001 RAL-721 927 chr3R 19783029 19783039 chr3R 19783144 19783155 7 116 3.0 2.0 2.5 2.0 126 chr3R 19783029 exon CG11407 + chr3R 19783092 3` UTR CG11407 + chr3R 19783155 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-721 928 chr3R 19953949 19953983 chr3R 19954026 19954060 10 73 2.0 2.0 2.0 3.3 111 chr3R 19953949 intron Hs6st - chr3R 19954004 intron Hs6st - chr3R 19954060 intron Hs6st - chr3R_10_19950001 chr3R_19950001 RAL-721 929 chr3R 19957275 19957300 chr3R 19957343 19957362 14 71 3.5 2.0 2.8 3.7 87 chr3R 19957275 intron Hs6st - chr3R 19957318 intron Hs6st - chr3R 19957362 intron Hs6st - chr3R_14_19955001 chr3R_19955001 RAL-721 930 chr3R 20146257 20146285 chr3R 20146368 20146384 6 105 1.5 2.0 1.8 2.1 127 chr3R 20146257 intergenic not near genes chr3R 20146320 intergenic not near genes chr3R 20146384 intergenic not near genes chr3R_6_20145001 chr3R_20145001 RAL-721 931 chr3R 20156708 20156717 chr3R 20165860 20165887 roo 5 9162 3.0 4.5 3.8 1.0 9179 chr3R 20156708 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165887 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-721 932 chr3R 20201352 20201387 chr3R 20201438 20201468 7 85 2.5 1.5 2.0 2.3 116 chr3R 20201352 intergenic not near genes chr3R 20201410 intergenic not near genes chr3R 20201468 intergenic not near genes chr3R_7_20200001 chr3R_20200001 RAL-721 933 chr3R 20242578 20242604 chr3R 20242680 20242707 9 99 1.5 1.5 1.5 3.6 129 chr3R 20242578 intron Nlg4 + chr3R 20242642 intron Nlg4 + chr3R 20242707 intron Nlg4 + chr3R_9_20240001 chr3R_20240001 RAL-721 934 chr3R 20282275 20282303 chr3R 20282351 20282379 6 76 0.0 1.0 0.5 4.0 104 chr3R 20282275 intron cic + chr3R 20282327 intron cic + chr3R 20282379 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-721 935 chr3R 20469294 20469468 chr3R 20469392 20469550 4 94 0.0 0.0 0.0 4.0 256 chr3R 20469294 intron Gfrl - chr3R 20469422 intron Gfrl - chr3R 20469550 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-721 936 chr3R 20506586 20506596 chr3R 20507389 20507392 BS 6 802 2.5 3.0 2.8 1.6 806 chr3R 20506586 intergenic Or92a + chr3R 20506989 intergenic CG4288 - chr3R 20507392 3` UTR CG4288 - chr3R_6_20505001 chr3R_20505001 RAL-721 937 chr3R 20733773 20733775 chr3R 20733862 20733867 4 91 10.5 3.5 7.0 0.5 94 chr3R 20733773 intergenic not near genes chr3R 20733820 intergenic not near genes chr3R 20733867 intergenic not near genes chr3R_4_20730001 chr3R_20730001 RAL-721 938 chr3R 20733778 20733797 chr3R 20733852 20733889 6 88 4.5 2.0 3.2 1.4 111 chr3R 20733778 intergenic not near genes chr3R 20733834 intergenic not near genes chr3R 20733889 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-721 939 chr3R 20735012 20735048 chr3R 20735093 20735110 9 72 1.5 5.0 3.2 2.1 98 chr3R 20735012 intergenic not near genes chr3R 20735061 intergenic not near genes chr3R 20735110 intergenic not near genes chr3R_9_20735001 chr3R_20735001 RAL-721 940 chr3R 20938907 20938940 chr3R 20938994 20939027 4 84 6.0 2.5 4.2 0.8 120 chr3R 20938907 intron CG31191 - chr3R 20938967 intron CG31191 - chr3R 20939027 intron CG31191 - chr3R_4_20935001 chr3R_20935001 RAL-721 941 chr3R 20942818 20942842 chr3R 20942894 20942912 6 75 0.0 1.5 0.8 3.3 94 chr3R 20942818 intron CG31191 - chr3R 20942865 intron CG31191 - chr3R 20942912 intron CG31191 - chr3R_6_20940001 chr3R_20940001 RAL-721 942 chr3R 21108045 21108064 chr3R 21108306 21108325 5 261 1.5 2.0 1.8 1.8 280 chr3R 21108045 intergenic Sec15 -,rtet + chr3R 21108185 intergenic Sec15 -,rtet + chr3R 21108325 intergenic rtet +,Sec15 - chr3R_5_21105001 chr3R_21105001 RAL-721 943 chr3R 21141681 21141701 chr3R 21150161 21150171 Tirant 4 8478 2.5 4.5 3.5 0.9 8490 chr3R 21141681 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150171 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-721 944 chr3R 21385694 21385949 chr3R 21385776 21386026 9 75 1.5 0.0 0.8 5.0 332 chr3R 21385694 intergenic not near genes chr3R 21385860 intergenic not near genes chr3R 21386026 intergenic not near genes chr3R_9_21385001 chr3R_21385001 RAL-721 945 chr3R 21408863 21408871 chr3R 21408935 21408948 4 77 1.0 1.5 1.2 1.8 85 chr3R 21408863 intergenic CheB93b + chr3R 21408906 intergenic CheB93b + chr3R 21408948 intergenic CheB93b + chr3R_4_21405001 chr3R_21405001 RAL-721 946 chr3R 21509010 21509030 chr3R 21509089 21509103 7 77 4.5 0.5 2.5 2.0 93 chr3R 21509010 intron C15 + chr3R 21509056 intron C15 + chr3R 21509103 intron C15 + chr3R_7_21505001 chr3R_21505001 RAL-721 947 chr3R 21527831 21527843 chr3R 21528156 21528183 4 332 1.5 3.5 2.5 1.1 352 chr3R 21527831 3` UTR CG7956 + chr3R 21528007 3` UTR CG7956 + chr3R 21528183 3` UTR CG7956 + chr3R_4_21525001 chr3R_21525001 RAL-721 948 chr3R 21761118 21761136 chr3R 21768510 21768528 mdg1 4 7392 4.5 3.0 3.8 0.8 7410 chr3R 21761118 exon CG42335 + chr3R 21764823 intron CG42335 + chr3R 21768528 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-721 949 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 13.0 16.5 14.8 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-721 950 chr3R 21337429 21337429 chr3R 21907534 21907534 6 570105 13.5 16.5 15.0 0.4 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-721 951 chr3R 21907534 21907534 chr3R 28831801 28831804 11 6924268 15.5 16.5 16.0 0.6 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-721 952 chr3R 21907535 21907535 chr3R 28831801 28831802 28 6924266 15.5 16.5 16.0 1.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-721 953 chr3R 21907536 21907536 chr3R 28831801 28831802 31 6924266 15.5 16.5 16.0 1.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_31_25365001 chr3R_25365001 RAL-721 954 chr3R 22025062 22025094 chr3R 22025138 22025163 10 74 3.5 4.0 3.8 2.1 101 chr3R 22025062 intron CG6028 - chr3R 22025112 intron CG6028 - chr3R 22025163 exon CG6028 - chr3R_10_22025001 chr3R_22025001 RAL-721 955 chr3R 22025879 22025888 chr3R 22025967 22025976 4 88 0.0 5.0 2.5 1.1 97 chr3R 22025879 intergenic Cchl -,CG6028 - chr3R 22025928 intergenic Cchl -,CG6028 - chr3R 22025976 3` UTR Cchl - chr3R_4_22025001 chr3R_22025001 RAL-721 956 chr3R 22108353 22108390 chr3R 22108584 22108622 4 228 4.5 1.0 2.8 1.1 269 chr3R 22108353 intron CG5778 - chr3R 22108488 intron CG5778 - chr3R 22108622 intron CG5778 - chr3R_4_22105001 chr3R_22105001 RAL-721 957 chr3R 22437809 22437821 chr3R 22437881 22437906 4 84 1.0 0.5 0.8 2.2 97 chr3R 22437809 intergenic not near genes chr3R 22437858 intergenic not near genes chr3R 22437906 intergenic not near genes chr3R_4_22435001 chr3R_22435001 RAL-721 958 chr3R 22450562 22450578 chr3R 22453184 22453217 NOF 8 2638 4.0 4.5 4.2 1.5 2655 chr3R 22450562 intron CG34376 + chr3R 22451890 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-721 959 chr3R 22507799 22507808 chr3R 22507874 22507876 4 76 4.0 5.0 4.5 0.7 77 chr3R 22507799 intron Octbeta1R + chr3R 22507838 intron Octbeta1R + chr3R 22507876 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-721 960 chr3R 22507809 22507819 chr3R 22507870 22507875 7 66 3.5 4.0 3.8 1.5 66 chr3R 22507809 intron Octbeta1R + chr3R 22507842 intron Octbeta1R + chr3R 22507875 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-721 961 chr3R 22559319 22559333 chr3R 22559405 22559420 5 87 2.5 1.0 1.8 1.8 101 chr3R 22559319 intron CG5278 - chr3R 22559370 intron CG5278 - chr3R 22559420 intron CG5278 - chr3R_5_22555001 chr3R_22555001 RAL-721 962 chr3R 22632872 22632905 chr3R 22632962 22632995 9 88 2.0 3.0 2.5 2.6 123 chr3R 22632872 intron loco - chr3R 22632934 intron loco - chr3R 22632995 intron loco - chr3R_9_22630001 chr3R_22630001 RAL-721 963 chr3R 22797764 22797928 chr3R 22797850 22798024 9 91 0.0 0.5 0.2 7.5 260 chr3R 22797764 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798024 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-721 964 chr3R 22842389 22842417 chr3R 22842487 22842516 7 96 2.5 2.0 2.2 2.2 127 chr3R 22842389 intergenic not near genes chr3R 22842452 intergenic not near genes chr3R 22842516 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-721 965 chr3R 22889018 22889042 chr3R 22889095 22889119 4 77 5.0 2.5 3.8 0.8 101 chr3R 22889018 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889119 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-721 966 chr3R 23039942 23039964 chr3R 23040089 23040111 8 147 2.5 4.0 3.2 1.9 169 chr3R 23039942 intergenic not near genes chr3R 23040026 intergenic not near genes chr3R 23040111 intergenic not near genes chr3R_8_23040001 chr3R_23040001 RAL-721 967 chr3R 23064172 23064198 chr3R 23064281 23064306 9 108 4.5 1.0 2.8 2.4 134 chr3R 23064172 exon CG17111 - chr3R 23064239 intron CG17111 - chr3R 23064306 exon CG17111 - chr3R_9_23060001 chr3R_23060001 RAL-721 968 chr3R 23090404 23090430 chr3R 23090485 23090513 8 81 2.0 2.0 2.0 2.7 109 chr3R 23090404 intron CG13830 - chr3R 23090458 intron CG13830 - chr3R 23090513 intron CG13830 - chr3R_8_23090001 chr3R_23090001 RAL-721 969 chr3R 23182685 23182692 chr3R 23182767 23182772 6 82 2.5 1.0 1.8 2.1 87 chr3R 23182685 intron Irk1 + chr3R 23182728 intron Irk1 + chr3R 23182772 intron Irk1 + chr3R_6_23180001 chr3R_23180001 RAL-721 970 chr3R 23488781 23488806 chr3R 23488960 23488969 4 171 1.5 2.5 2.0 1.3 188 chr3R 23488781 exon Ir94h + chr3R 23488875 exon Ir94h + chr3R 23488969 exon Ir94h + chr3R_4_23485001 chr3R_23485001 RAL-721 971 chr3R 23558413 23558429 chr3R 23560193 23560210 Bari1 4 1780 1.5 2.5 2.0 1.3 1797 chr3R 23558413 intron beat-IV + chr3R 23559312 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-721 972 chr3R 23568890 23568912 chr3R 23568962 23568989 7 74 2.0 4.0 3.0 1.8 99 chr3R 23568890 intron beat-IV + chr3R 23568940 intron beat-IV + chr3R 23568989 intron beat-IV + chr3R_7_23565001 chr3R_23565001 RAL-721 973 chr3R 23629818 23629848 chr3R 23629896 23629905 8 73 2.0 1.5 1.8 2.9 87 chr3R 23629818 intron CG31145 - chr3R 23629862 intron CG31145 - chr3R 23629905 intron CG31145 - chr3R_8_23625001 chr3R_23625001 RAL-721 974 chr3R 23684695 23684730 chr3R 23685181 23685194 roo 7 478 2.5 6.5 4.5 1.3 499 chr3R 23684695 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685194 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-721 975 chr3R 23874151 23874164 chr3R 23874218 23874247 4 73 5.5 3.5 4.5 0.7 96 chr3R 23874151 intron Pli - chr3R 23874199 intron Pli - chr3R 23874247 intron Pli - chr3R_4_23870001 chr3R_23870001 RAL-721 976 chr3R 23877457 23877484 chr3R 23877702 23877728 8 242 2.0 1.0 1.5 3.2 271 chr3R 23877457 intron Pli - chr3R 23877592 intron Pli - chr3R 23877728 intron Pli - chr3R_8_23875001 chr3R_23875001 RAL-721 977 chr3R 23893788 23893799 chr3R 23893891 23893903 5 102 3.5 2.0 2.8 1.3 115 chr3R 23893788 intergenic sba -,tbrd-1 - chr3R 23893846 intergenic sba -,tbrd-1 - chr3R 23893903 intergenic sba - chr3R_5_23890001 chr3R_23890001 RAL-721 978 chr3R 23893802 23893815 chr3R 23893890 23893918 9 96 1.5 1.5 1.5 3.6 116 chr3R 23893802 intergenic sba -,tbrd-1 - chr3R 23893860 intergenic sba -,tbrd-1 - chr3R 23893918 intergenic sba - chr3R_9_23890001 chr3R_23890001 RAL-721 979 chr3R 23944913 23944932 chr3R 23944997 23945017 7 83 1.5 3.0 2.2 2.2 104 chr3R 23944913 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-721 980 chr3R 23949051 23949074 chr3R 23949125 23949146 5 75 1.5 2.0 1.8 1.8 95 chr3R 23949051 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-721 981 chr3R 24069737 24069751 chr3R 24069997 24070011 4 260 0.5 2.0 1.2 1.8 274 chr3R 24069737 intron 4EHP - chr3R 24069874 intron 4EHP - chr3R 24070011 intron 4EHP - chr3R_4_24065001 chr3R_24065001 RAL-721 982 chr3R 24072083 24072116 chr3R 24072521 24072541 jockey 6 435 4.5 7.0 5.8 0.9 458 chr3R 24072083 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072541 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-721 983 chr3R 24076916 24076949 chr3R 24078381 24078416 hobo 16 1466 2.0 3.5 2.8 4.2 1500 chr3R 24076916 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_16_24075001 chr3R_24075001 RAL-721 984 chr3R 24085499 24085537 chr3R 24085575 24085613 9 76 2.5 1.5 2.0 3.0 114 chr3R 24085499 intron 4EHP - chr3R 24085556 intron 4EHP - chr3R 24085613 intron 4EHP - chr3R_9_24085001 chr3R_24085001 RAL-721 985 chr3R 24199750 24199769 chr3R 24199830 24199849 6 79 2.0 3.0 2.5 1.7 99 chr3R 24199750 intron twin - chr3R 24199800 intron twin - chr3R 24199849 intron twin - chr3R_6_24195001 chr3R_24195001 RAL-721 986 chr3R 24207225 24207244 chr3R 24212303 24212322 flea 7 5076 3.5 5.5 4.5 1.3 5097 chr3R 24207225 intron twin - chr3R 24209774 intron twin - chr3R 24212322 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-721 987 chr3R 24341652 24341664 chr3R 24341738 24341750 4 86 2.5 2.0 2.2 1.2 98 chr3R 24341652 5` UTR Ms + chr3R 24341701 intron Ms + chr3R 24341750 intron Ms + chr3R_4_24340001 chr3R_24340001 RAL-721 988 chr3R 24433479 24433503 chr3R 24433557 24433582 7 79 0.5 2.5 1.5 2.8 103 chr3R 24433479 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433582 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-721 989 chr3R 24473579 24473607 chr3R 24473698 24473725 13 118 1.0 4.0 2.5 3.7 146 chr3R 24473579 intergenic not near genes chr3R 24473652 intergenic not near genes chr3R 24473725 intergenic not near genes chr3R_13_24470001 chr3R_24470001 RAL-721 990 chr3R 24527806 24527831 chr3R 24527896 24527922 6 90 1.0 2.5 1.8 2.1 116 chr3R 24527806 intergenic CG6607 +,CG13618 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527922 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 RAL-721 991 chr3R 24743048 24743061 chr3R 24743133 24743145 4 84 1.0 4.0 2.5 1.1 97 chr3R 24743048 intron tok + chr3R 24743096 intron tok + chr3R 24743145 intron tok + chr3R_4_24740001 chr3R_24740001 RAL-721 992 chr3R 24785093 24785111 chr3R 24785169 24785187 5 75 1.5 1.5 1.5 2.0 94 chr3R 24785093 3` UTR CG5805 - chr3R 24785140 3` UTR CG5805 - chr3R 24785187 3` UTR CG5805 - chr3R_5_24785001 chr3R_24785001 RAL-721 993 chr3R 24927130 24927155 chr3R 24931920 24931937 Doc 4 4788 1.5 1.0 1.2 1.8 4807 chr3R 24927130 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931937 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-721 994 chr3R 24974909 24974932 chr3R 24974988 24975011 4 79 1.5 2.5 2.0 1.3 102 chr3R 24974909 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975011 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-721 995 chr3R 25004907 25004917 chr3R 25004990 25004998 4 82 0.5 5.5 3.0 1.0 91 chr3R 25004907 intron tnc + chr3R 25004952 intron tnc + chr3R 25004998 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-721 996 chr3R 25027537 25027567 chr3R 25027750 25027779 7 212 1.0 1.0 1.0 3.5 242 chr3R 25027537 intron Hr96 + chr3R 25027658 intron Hr96 + chr3R 25027779 intron Hr96 + chr3R_7_25025001 chr3R_25025001 RAL-721 997 chr3R 25053429 25053461 chr3R 25053506 25053538 8 77 2.5 1.5 2.0 2.7 109 chr3R 25053429 3` UTR CG31109 - chr3R 25053484 3` UTR CG31109 - chr3R 25053538 3` UTR CG31109 - chr3R_8_25050001 chr3R_25050001 RAL-721 998 chr3R 25081895 25081923 chr3R 25081983 25082014 9 86 2.5 2.0 2.2 2.8 119 chr3R 25081895 intergenic not near genes chr3R 25081954 intergenic not near genes chr3R 25082014 intergenic not near genes chr3R_9_25080001 chr3R_25080001 RAL-721 999 chr3R 25203347 25203380 chr3R 25203477 25203510 10 128 1.5 1.0 1.2 4.5 163 chr3R 25203347 intron,intron Cad96Ca -,CG13654 + chr3R 25203428 intron,intron Cad96Ca -,CG13654 + chr3R 25203510 intron,intron Cad96Ca -,CG13654 + chr3R_10_25200001 chr3R_25200001 RAL-721 1000 chr3R 25296168 25296196 chr3R 25296249 25296277 9 81 1.0 6.5 3.8 1.9 109 chr3R 25296168 3` UTR CG31097 - chr3R 25296222 3` UTR CG31097 - chr3R 25296277 3` UTR CG31097 - chr3R_9_25295001 chr3R_25295001 RAL-721 1001 chr3R 25642590 25642622 chr3R 25642681 25642713 7 90 3.5 3.0 3.2 1.7 123 chr3R 25642590 intron jigr1 + chr3R 25642652 intron jigr1 + chr3R 25642713 intron jigr1 + chr3R_7_25640001 chr3R_25640001 RAL-721 1002 chr3R 25689131 25689164 chr3R 25689237 25689270 8 107 2.5 3.5 3.0 2.0 139 chr3R 25689131 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-721 1003 chr3R 25765879 25765911 chr3R 25765957 25765974 11 75 2.0 2.0 2.0 3.7 95 chr3R 25765879 intergenic not near genes chr3R 25765926 intergenic not near genes chr3R 25765974 intergenic not near genes chr3R_11_25765001 chr3R_25765001 RAL-721 1004 chr3R 25832711 25832720 chr3R 25841870 25841902 roo 5 9177 2.5 1.5 2.0 1.7 9191 chr3R 25832711 exon alpha4GT2 + chr3R 25837306 intron alpha4GT2 + chr3R 25841902 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-721 1005 chr3R 25927504 25927529 chr3R 25927586 25927611 4 82 5.0 0.0 2.5 1.1 107 chr3R 25927504 intron CCAP-R - chr3R 25927558 intron CCAP-R - chr3R 25927611 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-721 1006 chr3R 26108832 26108855 chr3R 26117412 26117416 Tirant 7 8576 1.5 0.0 0.8 3.9 8584 chr3R 26108832 5` UTR CG31324 + chr3R 26113124 intron CG31324 + chr3R 26117416 intron CG31324 + chr3R_7_26110001 chr3R_26110001 RAL-721 1007 chr3R 26122223 26122477 chr3R 26122325 26122551 6 80 3.0 2.5 2.8 1.6 328 chr3R 26122223 intron CG31324 + chr3R 26122387 intron CG31324 + chr3R 26122551 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-721 1008 chr3R 26206538 26206553 chr3R 26206622 26206641 6 86 4.5 2.0 3.2 1.4 103 chr3R 26206538 intron CR44320 + chr3R 26206590 intron CR44320 + chr3R 26206641 intron CR44320 + chr3R_6_26205001 chr3R_26205001 RAL-721 1009 chr3R 26207695 26207704 chr3R 26207844 26207844 4 146 1.5 3.5 2.5 1.1 149 chr3R 26207695 intron CR44320 + chr3R 26207770 intron CR44320 + chr3R 26207844 intron CR44320 + chr3R_4_26205001 chr3R_26205001 RAL-721 1010 chr3R 26241430 26241446 chr3R 26241498 26241515 12 73 3.5 1.0 2.2 3.8 85 chr3R 26241430 intron CR42745 + chr3R 26241472 intron CR42745 + chr3R 26241515 intron CR42745 + chr3R_12_26240001 chr3R_26240001 RAL-721 1011 chr3R 26376329 26376354 chr3R 26385487 26385514 roo 4 9158 2.0 1.0 1.5 1.6 9185 chr3R 26376329 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-721 1012 chr3R 26466706 26466736 chr3R 26466817 26466826 8 108 3.5 4.0 3.8 1.7 120 chr3R 26466706 exon CG5455 + chr3R 26466766 exon CG5455 + chr3R 26466826 exon CG5455 + chr3R_8_26465001 chr3R_26465001 RAL-721 1013 chr3R 26558326 26558356 chr3R 26565638 26565668 Stalker4 8 7309 3.0 3.0 3.0 2.0 7342 chr3R 26558326 intron scrib + chr3R 26561997 intron scrib + chr3R 26565668 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-721 1014 chr3R 26575018 26575038 chr3R 26575086 26575116 6 76 1.5 1.5 1.5 2.4 98 chr3R 26575018 exon scrib + chr3R 26575067 intron scrib + chr3R 26575116 intron scrib + chr3R_6_26575001 chr3R_26575001 RAL-721 1015 chr3R 26674526 26674556 chr3R 26674655 26674685 7 129 1.5 2.5 2.0 2.3 159 chr3R 26674526 intron beat-VII - chr3R 26674606 intron beat-VII - chr3R 26674685 intron beat-VII - chr3R_7_26670001 chr3R_26670001 RAL-721 1016 chr3R 26685858 26685892 chr3R 26686037 26686072 11 179 2.5 3.0 2.8 2.9 214 chr3R 26685858 intergenic not near genes chr3R 26685965 intergenic not near genes chr3R 26686072 intergenic not near genes chr3R_11_26685001 chr3R_26685001 RAL-721 1017 chr3R 26810553 26810576 chr3R 26811038 26811059 roo 7 485 1.5 2.0 1.8 2.5 506 chr3R 26810553 intron Tl + chr3R 26810806 intron Tl + chr3R 26811059 intron Tl + chr3R_7_26810001 chr3R_26810001 RAL-721 1018 chr3R 26870796 26870824 chr3R 26870874 26870902 8 76 1.5 3.0 2.2 2.5 106 chr3R 26870796 intron BM-40-SPARC - chr3R 26870849 intron BM-40-SPARC - chr3R 26870902 intron BM-40-SPARC - chr3R_8_26870001 chr3R_26870001 RAL-721 1019 chr3R 26898251 26898255 chr3R 26898333 26898342 4 85 3.0 3.0 3.0 1.0 91 chr3R 26898251 intron T48 + chr3R 26898296 intron T48 + chr3R 26898342 intron T48 + chr3R_4_26895001 chr3R_26895001 RAL-721 1020 chr3R 27028723 27028748 chr3R 27028802 27028827 4 76 0.5 1.0 0.8 2.2 104 chr3R 27028723 intron RYa-R + chr3R 27028775 intron RYa-R + chr3R 27028827 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-721 1021 chr3R 27140515 27140540 chr3R 27148125 27148150 412 9 7610 2.0 2.5 2.2 2.8 7635 chr3R 27140515 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148150 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-721 1022 chr3R 27293388 27293404 chr3R 27293519 27293539 4 130 1.0 2.0 1.5 1.6 151 chr3R 27293388 intergenic not near genes chr3R 27293464 intergenic not near genes chr3R 27293539 intergenic not near genes chr3R_4_27290001 chr3R_27290001 RAL-721 1023 chr3R 27342793 27342825 chr3R 27351374 27351406 Tirant 7 8580 1.5 2.5 2.0 2.3 8613 chr3R 27342793 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-721 1024 chr3R 27377486 27377496 chr3R 27377558 27377582 4 83 5.5 2.0 3.8 0.8 96 chr3R 27377486 3` UTR side - chr3R 27377534 3` UTR side - chr3R 27377582 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-721 1025 chr3R 27619702 27619730 chr3R 27619816 27619842 6 110 2.5 4.5 3.5 1.3 140 chr3R 27619702 intron Tusp + chr3R 27619772 intron Tusp + chr3R 27619842 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-721 1026 chr3R 27660714 27660743 chr3R 27660790 27660819 6 75 0.0 1.5 0.8 3.3 105 chr3R 27660714 intergenic not near genes chr3R 27660766 intergenic not near genes chr3R 27660819 intergenic not near genes chr3R_6_27660001 chr3R_27660001 RAL-721 1027 chr3R 27685761 27685786 chr3R 27685840 27685855 5 76 1.5 0.5 1.0 2.5 94 chr3R 27685761 3` UTR CG31055 - chr3R 27685808 3` UTR CG31055 - chr3R 27685855 3` UTR CG31055 - chr3R_5_27685001 chr3R_27685001 RAL-721 1028 chr3R 27706776 27706810 chr3R 27706853 27706886 6 76 0.5 1.0 0.8 3.3 110 chr3R 27706776 intergenic CG12428 -,CG12877 + chr3R 27706831 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 RAL-721 1029 chr3R 27783744 27783765 chr3R 27783820 27783840 6 76 1.0 3.0 2.0 2.0 96 chr3R 27783744 intron CG34353 - chr3R 27783792 intron CG34353 - chr3R 27783840 intron CG34353 - chr3R_6_27780001 chr3R_27780001 RAL-721 1030 chr3R 27851104 27851112 chr3R 27851227 27851233 4 122 4.0 0.0 2.0 1.3 129 chr3R 27851104 intron CG34353 - chr3R 27851168 intron CG34353 - chr3R 27851233 intron CG34353 - chr3R_4_27850001 chr3R_27850001 RAL-721 1031 chr3R 27856758 27856792 chr3R 27858241 27858275 hopper2 6 1480 2.5 5.0 3.8 1.2 1517 chr3R 27856758 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-721 1032 chr3R 27862957 27862973 chr3R 27868262 27868277 Transpac 4 5305 1.5 1.5 1.5 1.6 5320 chr3R 27862957 intron CG34353 - chr3R 27865617 intron CG34353 - chr3R 27868277 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-721 1033 chr3R 27875702 27875730 chr3R 27882757 27882785 297 5 7055 2.5 4.0 3.2 1.2 7083 chr3R 27875702 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-721 1034 chr3R 28018228 28018240 chr3R 28018314 28018327 5 87 2.5 0.0 1.2 2.3 99 chr3R 28018228 intergenic not near genes chr3R 28018278 intergenic not near genes chr3R 28018327 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-721 1035 chr3R 28068493 28068521 chr3R 28073935 28073963 I-element 5 5441 1.0 3.0 2.0 1.7 5470 chr3R 28068493 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-721 1036 chr3R 28173680 28173694 chr3R 28181110 28181116 mdg1 4 7428 2.5 2.0 2.2 1.2 7436 chr3R 28173680 intron CG34354 + chr3R 28177398 intron CG34354 + chr3R 28181116 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-721 1037 chr3R 28253350 28253368 chr3R 28255845 28255873 jockey 9 2505 2.0 4.0 3.0 2.2 2523 chr3R 28253350 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255873 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-721 1038 chr3R 28262674 28262685 chr3R 28262750 28262761 8 76 1.0 6.0 3.5 1.8 87 chr3R 28262674 intergenic CG43125 - chr3R 28262718 intergenic CG43125 - chr3R 28262761 exon CG43125 - chr3R_8_28260001 chr3R_28260001 RAL-721 1039 chr3R 28363256 28363285 chr3R 28363346 28363347 5 82 1.5 1.0 1.2 2.3 91 chr3R 28363256 intergenic not near genes chr3R 28363302 intergenic not near genes chr3R 28363347 intergenic not near genes chr3R_5_28360001 chr3R_28360001 RAL-721 1040 chr3R 28390111 28390147 chr3R 28390188 28390194 5 72 2.5 2.5 2.5 1.4 83 chr3R 28390111 intergenic not near genes chr3R 28390152 intergenic not near genes chr3R 28390194 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-721 1041 chr3R 28393054 28393079 chr3R 28393368 28393391 5 313 1.0 0.5 0.8 2.8 337 chr3R 28393054 intergenic not near genes chr3R 28393222 intergenic not near genes chr3R 28393391 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-721 1042 chr3R 28393705 28393728 chr3R 28393802 28393828 5 99 1.0 1.5 1.2 2.3 123 chr3R 28393705 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393828 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-721 1043 chr3R 28484354 28484372 chr3R 28486273 28486290 10 1920 11.5 22.0 16.8 0.6 1936 chr3R 28484354 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486290 intergenic CG1894 + chr3R_10_28485001 chr3R_28485001 RAL-721 1044 chr3R 28792875 28792898 chr3R 28797967 28797993 jockey 4 5094 1.5 2.0 1.8 1.4 5118 chr3R 28792875 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-721 1045 chr3R 28802039 28802069 chr3R 28802119 28802126 10 77 2.0 3.0 2.5 2.9 87 chr3R 28802039 intergenic not near genes chr3R 28802082 intergenic not near genes chr3R 28802126 intergenic not near genes chr3R_10_28800001 chr3R_28800001 RAL-721 1046 chr3R 21907534 21907536 chr3R 28831799 28831802 62 6924266 15.5 16.5 16.0 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_62_25365001 chr3R_25365001 RAL-721 1047 chr3R 29011970 29011983 chr3R 29012081 29012095 6 111 3.0 0.0 1.5 2.4 125 chr3R 29011970 intron wat - chr3R 29012032 intron wat - chr3R 29012095 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-721 1048 chr3R 29011985 29011993 chr3R 29012077 29012105 5 108 3.0 0.0 1.5 2.0 120 chr3R 29011985 intron wat - chr3R 29012045 intron wat - chr3R 29012105 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-721 1049 chr3R 21907534 21907536 chr3R 29013340 29013340 7 7105806 15.5 11.5 13.5 0.5 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-721 1050 chr3R 29023238 29023266 chr3R 29023342 29023369 5 103 2.0 3.0 2.5 1.4 131 chr3R 29023238 5` UTR CR45567 + chr3R 29023304 5` UTR CR45567 + chr3R 29023369 5` UTR CR45567 + chr3R_5_29020001 chr3R_29020001 RAL-721 1051 chr3R 29079380 29079402 chr3R 29080752 29080774 NOF 6 1372 3.0 2.5 2.8 1.6 1394 chr3R 29079380 intron CG11873 + chr3R 29080077 intron CG11873 + chr3R 29080774 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-721 1052 chr3R 29180069 29180082 chr3R 29180161 29180169 4 90 4.0 6.0 5.0 0.7 100 chr3R 29180069 intron CG14509 - chr3R 29180119 intron CG14509 - chr3R 29180169 intron CG14509 - chr3R_4_29180001 chr3R_29180001 RAL-721 1053 chr3R 29183112 29183138 chr3R 29183189 29183217 4 78 6.5 3.0 4.8 0.7 105 chr3R 29183112 intron CG14509 - chr3R 29183164 intron CG14509 - chr3R 29183217 intron CG14509 - chr3R_4_29180001 chr3R_29180001 RAL-721 1054 chr3R 29282815 29282821 chr3R 29282901 29282907 4 86 2.0 7.5 4.8 0.7 92 chr3R 29282815 intergenic not near genes chr3R 29282861 intergenic not near genes chr3R 29282907 intergenic not near genes chr3R_4_29280001 chr3R_29280001 RAL-721 1055 chr3R 29356058 29356072 chr3R 29356128 29356153 4 78 1.5 0.0 0.8 2.2 95 chr3R 29356058 intergenic CR45547 - chr3R 29356106 intergenic CR45547 - chr3R 29356153 3` UTR CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-721 1056 chr3R 29406633 29406649 chr3R 29407902 29407935 jockey 4 1278 0.5 3.5 2.0 1.3 1302 chr3R 29406633 intron Ptp99A + chr3R 29407284 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-721 1057 chr3R 29447292 29447314 chr3R 29447368 29447397 5 81 1.5 1.5 1.5 2.0 105 chr3R 29447292 intron Ptp99A + chr3R 29447344 intron Ptp99A + chr3R 29447397 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-721 1058 chr3R 29472016 29472027 chr3R 29472109 29472120 4 92 4.5 4.5 4.5 0.7 104 chr3R 29472016 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472120 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-721 1059 chr3R 29627298 29627310 chr3R 29627709 29627720 4 411 2.0 6.0 4.0 0.8 422 chr3R 29627298 intergenic not near genes chr3R 29627509 intergenic not near genes chr3R 29627720 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-721 1060 chr3R 29718157 29718171 chr3R 29718233 29718247 4 76 2.0 2.0 2.0 1.3 90 chr3R 29718157 intergenic not near genes chr3R 29718202 intergenic CG15506 + chr3R 29718247 intergenic CG15506 + chr3R_4_29715001 chr3R_29715001 RAL-721 1061 chr3R 29738265 29738293 chr3R 29739732 29739760 hobo 5 1467 2.5 2.0 2.2 1.6 1495 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739760 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-721 1062 chr3R 29758936 29758970 chr3R 29759014 29759048 11 73 5.0 2.0 3.5 2.4 112 chr3R 29758936 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_11_29755001 chr3R_29755001 RAL-721 1063 chr3R 29838501 29838519 chr3R 29838618 29838632 6 114 1.0 6.0 3.5 1.3 131 chr3R 29838501 intergenic not near genes chr3R 29838566 intergenic not near genes chr3R 29838632 intergenic not near genes chr3R_6_29835001 chr3R_29835001 RAL-721 1064 chr3R 29882018 29882050 chr3R 29891175 29891207 roo 4 9157 1.5 2.0 1.8 1.4 9189 chr3R 29882018 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-721 1065 chr3R 29950576 29950593 chr3R 29950653 29950670 5 75 3.0 3.0 3.0 1.2 94 chr3R 29950576 intergenic TkR99D - chr3R 29950623 intergenic TkR99D - chr3R 29950670 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-721 1066 chr3R 29963480 29963505 chr3R 29963582 29963607 4 102 1.0 0.5 0.8 2.2 127 chr3R 29963480 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963607 intron TkR99D - chr3R_4_29960001 chr3R_29960001 RAL-721 1067 chr3R 30084855 30084881 chr3R 30086318 30086348 hobo 10 1462 4.0 4.0 4.0 2.0 1493 chr3R 30084855 intron sima + chr3R 30085602 intron sima + chr3R 30086348 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-721 1068 chr3R 30210663 30210670 chr3R 30210743 30210749 4 80 0.0 4.0 2.0 1.3 86 chr3R 30210663 intergenic CecA1 +,Anp + chr3R 30210706 intergenic CecA1 +,Anp + chr3R 30210749 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-721 1069 chr3R 30238761 30238783 chr3R 30239925 30239946 1360 4 1163 2.0 0.5 1.2 1.8 1185 chr3R 30238761 intergenic not near genes chr3R 30239354 intergenic not near genes chr3R 30239946 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-721 1070 chr3R 30252274 30252332 chr3R 30252399 30252630 5 158 0.0 4.0 2.0 1.7 356 chr3R 30252274 exon CG9682 + chr3R 30252452 exon CG9682 + chr3R 30252630 exon CG9682 + chr3R_5_30250001 chr3R_30250001 RAL-721 1071 chr3R 30253610 30253628 chr3R 30253862 30253868 5 249 1.0 2.5 1.8 1.8 258 chr3R 30253610 intron CG18404 + chr3R 30253739 intron CG18404 + chr3R 30253868 intron CG18404 + chr3R_5_30250001 chr3R_30250001 RAL-721 1072 chr3R 30330503 30330524 chr3R 30330583 30330600 5 76 3.0 4.5 3.8 1.0 97 chr3R 30330503 intron hdc + chr3R 30330552 intron hdc + chr3R 30330600 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-721 1073 chr3R 30396226 30396244 chr3R 30404484 30404509 roo 8 8264 1.5 1.5 1.5 3.2 8283 chr3R 30396226 intergenic not near genes chr3R 30400368 intergenic not near genes chr3R 30404509 5` UTR CR45570 + chr3R_8_30400001 chr3R_30400001 RAL-721 1074 chr3R 30480473 30480505 chr3R 30482940 30482973 jockey 12 2467 3.0 4.5 3.8 2.5 2500 chr3R 30480473 intron PH4alphaEFB + chr3R 30481723 intron PH4alphaEFB + chr3R 30482973 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-721 1075 chr3R 30571716 30571726 chr3R 30571791 30571806 4 79 0.0 2.5 1.2 1.8 90 chr3R 30571716 intron tmod + chr3R 30571761 intron tmod + chr3R 30571806 intron tmod + chr3R_4_30570001 chr3R_30570001 RAL-721 1076 chr3R 30627618 30627636 chr3R 30627698 30627709 5 79 4.0 2.0 3.0 1.2 91 chr3R 30627618 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627709 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-721 1077 chr3R 30679519 30679552 chr3R 30686988 30687020 blood 4 7469 2.5 2.0 2.2 1.2 7501 chr3R 30679519 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-721 1078 chr3R 30690160 30690185 chr3R 30690244 30690268 6 84 4.5 4.0 4.2 1.2 108 chr3R 30690160 intergenic Spn100A + chr3R 30690214 intergenic Spn100A + chr3R 30690268 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-721 1079 chr3R 30948077 30948109 chr3R 30948267 30948300 9 190 0.5 3.0 1.8 3.2 223 chr3R 30948077 intergenic not near genes chr3R 30948188 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_9_30945001 chr3R_30945001 RAL-721 1080 chr3R 31074244 31074261 chr3R 31081842 31081859 springer 4 7598 3.0 4.5 3.8 0.8 7615 chr3R 31074244 intron Sox100B + chr3R 31078052 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-721 1081 chr3R 31144752 31144779 chr3R 31144840 31144869 4 89 2.0 0.0 1.0 2.0 117 chr3R 31144752 intron Gycbeta100B + chr3R 31144810 intron Gycbeta100B + chr3R 31144869 intron Gycbeta100B + chr3R_4_31140001 chr3R_31140001 RAL-721 1082 chr3R 31279373 31279403 chr3R 31285564 31285594 diver 8 6187 4.5 4.0 4.2 1.5 6221 chr3R 31279373 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-721 1083 chr3R 31344377 31344407 chr3R 31344468 31344487 7 87 1.5 5.0 3.2 1.7 110 chr3R 31344377 intron CG34347 + chr3R 31344432 intron CG34347 + chr3R 31344487 intron CG34347 + chr3R_7_31340001 chr3R_31340001 RAL-721 1084 chr3R 31413092 31413123 chr3R 31418292 31418323 copia 8 5196 2.5 3.5 3.0 2.0 5231 chr3R 31413092 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-721 1085 chr3R 31421223 31421245 chr3R 31421307 31421329 10 85 2.5 4.5 3.5 2.2 106 chr3R 31421223 intron Gprk2 + chr3R 31421276 intron Gprk2 + chr3R 31421329 intron Gprk2 + chr3R_10_31420001 chr3R_31420001 RAL-721 1086 chr3R 31447705 31447724 chr3R 31448022 31448028 4 314 1.5 1.0 1.2 1.8 323 chr3R 31447705 intron Gprk2 + chr3R 31447866 intron Gprk2 + chr3R 31448028 intron Gprk2 + chr3R_4_31445001 chr3R_31445001 RAL-721 1087 chr3R 31538486 31538515 chr3R 31538563 31538593 4 76 2.5 0.0 1.2 1.8 107 chr3R 31538486 intergenic not near genes chr3R 31538540 intergenic not near genes chr3R 31538593 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-721 1088 chr3R 31639980 31640012 chr3R 31640063 31640079 8 75 1.0 1.5 1.2 3.6 99 chr3R 31639980 intron kek6 + chr3R 31640030 intron kek6 + chr3R 31640079 intron kek6 + chr3R_8_31640001 chr3R_31640001 RAL-721 1089 chr3R 31691530 31691562 chr3R 31696296 31696328 Doc 15 4762 5.0 4.5 4.8 2.6 4798 chr3R 31691530 intergenic not near genes chr3R 31693929 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_15_31690001 chr3R_31690001 RAL-721 1090 chr3R 31720196 31720226 chr3R 31720473 31720503 6 275 1.0 4.0 2.5 1.7 307 chr3R 31720196 intron ttk + chr3R 31720350 intron ttk + chr3R 31720503 intron ttk + chr3R_6_31720001 chr3R_31720001 RAL-721 1091 chr3R 31924600 31924606 chr3R 31924677 31924687 5 80 0.0 3.0 1.5 2.0 87 chr3R 31924600 intron heph - chr3R 31924644 intron heph - chr3R 31924687 intron heph - chr3R_5_31920001 chr3R_31920001 RAL-721 1092 chr3R 31997990 31998020 chr3R 32005460 32005490 blood 7 7469 2.0 4.5 3.2 1.7 7500 chr3R 31997990 intron heph - chr3R 32001740 intron heph - chr3R 32005490 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-721 1093 chr4 671603 671636 chr4 680186 680218 Tirant 6 8582 1.5 2.0 1.8 2.1 8615 chr4 671603 intron CG11360 + chr4 675910 intron CG11360 + chr4 680218 intron CG11360 + chr4_6_675001 chr4_675001 RAL-721 1094 chrX 551427 551445 chrX 558989 559007 412 4 7562 2.0 3.5 2.8 1.1 7580 chrX 551427 intron Appl + chrX 555217 intron Appl + chrX 559007 intron Appl + chrX_4_555001 chrX_555001 RAL-721 1095 chrX 551447 551451 chrX 558982 559013 412 5 7554 2.0 2.5 2.2 1.6 7566 chrX 551447 intron Appl + chrX 555230 intron Appl + chrX 559013 intron Appl + chrX_5_555001 chrX_555001 RAL-721 1096 chrX 562258 562289 chrX 562468 562499 4 210 3.0 1.5 2.2 1.2 241 chrX 562258 intron Appl + chrX 562378 intron Appl + chrX 562499 intron Appl + chrX_4_560001 chrX_560001 RAL-721 1097 chrX 689434 689452 chrX 689526 689527 5 89 5.5 2.5 4.0 1.0 93 chrX 689434 intron sdk + chrX 689480 intron sdk + chrX 689527 intron sdk + chrX_5_685001 chrX_685001 RAL-721 1098 chrX 802287 802320 chrX 802364 802387 7 75 3.0 2.5 2.8 1.8 100 chrX 802287 exon CG13359 - chrX 802337 exon CG13359 - chrX 802387 exon CG13359 - chrX_7_800001 chrX_800001 RAL-721 1099 chrX 827603 827618 chrX 835395 835403 roo 5 7790 3.5 1.0 2.2 1.6 7800 chrX 827603 intron CG43867 - chrX 831503 intron CG43867 - chrX 835403 intron CG43867 - chrX_5_830001 chrX_830001 RAL-721 1100 chrX 827621 827629 chrX 835394 835421 roo 4 7783 3.0 1.0 2.0 1.3 7800 chrX 827621 intron CG43867 - chrX 831521 intron CG43867 - chrX 835421 intron CG43867 - chrX_4_830001 chrX_830001 RAL-721 1101 chrX 906705 906733 chrX 908493 908522 S-element 5 1787 2.5 3.5 3.0 1.2 1817 chrX 906705 intron CG43867 - chrX 907614 intron CG43867 - chrX 908522 intron CG43867 - chrX_5_905001 chrX_905001 RAL-721 1102 chrX 1051078 1051087 chrX 1051156 1051165 4 78 3.5 5.0 4.2 0.8 87 chrX 1051078 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051165 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-721 1103 chrX 1357785 1357808 chrX 1367955 1367978 Doc 4 10170 1.0 1.5 1.2 1.8 10193 chrX 1357785 intergenic png - chrX 1362882 intergenic not near genes chrX 1367978 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-721 1104 chrX 1440093 1440125 chrX 1440194 1440196 5 86 5.0 2.0 3.5 1.1 103 chrX 1440093 exon futsch + chrX 1440144 exon futsch + chrX 1440196 exon futsch + chrX_5_1440001 chrX_1440001 RAL-721 1105 chrX 1518051 1518068 chrX 1523453 1523453 jockey 5 5398 3.5 4.5 4.0 1.0 5402 chrX 1518051 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523453 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-721 1106 chrX 1627972 1628002 chrX 1635440 1635457 gtwin 7 7466 4.0 2.5 3.2 1.7 7485 chrX 1627972 intron,intron Mur2B -,br + chrX 1631714 intron,intron Mur2B -,br + chrX 1635457 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-721 1107 chrX 1903364 1903375 chrX 1903441 1903457 5 81 7.5 3.0 5.2 0.8 93 chrX 1903364 5` UTR CR43864 + chrX 1903410 5` UTR CR43864 + chrX 1903457 5` UTR CR43864 + chrX_5_1900001 chrX_1900001 RAL-721 1108 chrX 1954906 1954919 chrX 1962829 1962833 Stalker2 5 7924 2.0 0.5 1.2 2.3 7927 chrX 1954906 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962833 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-721 1109 chrX 2069368 2069402 chrX 2069468 2069495 8 99 3.5 1.0 2.2 2.5 127 chrX 2069368 intron,exon CG4199 -,CG4194 + chrX 2069432 intron,3` UTR CG4199 -,CG4194 + chrX 2069495 intron,3` UTR CG4199 -,CG4194 + chrX_8_2065001 chrX_2065001 RAL-721 1110 chrX 2089338 2089354 chrX 2089594 2089610 4 252 5.0 4.5 4.8 0.7 272 chrX 2089338 intron Unc-76 + chrX 2089474 intron Unc-76 + chrX 2089610 intron Unc-76 + chrX_4_2085001 chrX_2085001 RAL-721 1111 chrX 2096378 2096388 chrX 2096467 2096480 6 92 1.0 1.5 1.2 2.7 102 chrX 2096378 intron csw + chrX 2096429 intron csw + chrX 2096480 intron csw + chrX_6_2095001 chrX_2095001 RAL-721 1112 chrX 2353827 2353861 chrX 2353904 2353938 10 70 1.5 3.5 2.5 2.9 111 chrX 2353827 intron ptr - chrX 2353882 intron ptr - chrX 2353938 intron ptr - chrX_10_2350001 chrX_2350001 RAL-721 1113 chrX 2552801 2552823 chrX 2552924 2552947 6 123 2.5 1.5 2.0 2.0 146 chrX 2552801 intron Pdfr + chrX 2552874 intron Pdfr + chrX 2552947 intron Pdfr + chrX_6_2550001 chrX_2550001 RAL-721 1114 chrX 2635390 2635400 chrX 2635498 2635509 6 108 2.5 4.5 3.5 1.3 119 chrX 2635390 intron sgg + chrX 2635450 intron sgg + chrX 2635509 intron sgg + chrX_6_2635001 chrX_2635001 RAL-721 1115 chrX 2693819 2693854 chrX 2693899 2693933 6 74 3.5 1.5 2.5 1.7 114 chrX 2693819 exon CG2650 - chrX 2693876 5` UTR CG2650 - chrX 2693933 intergenic CG2650 -,CG2658 - chrX_6_2690001 chrX_2690001 RAL-721 1116 chrX 2888111 2888132 chrX 2888189 2888208 5 78 6.5 3.5 5.0 0.8 97 chrX 2888111 intron kirre + chrX 2888160 intron kirre + chrX 2888208 intron kirre + chrX_5_2885001 chrX_2885001 RAL-721 1117 chrX 3306347 3306364 chrX 3306429 3306438 7 80 0.5 0.0 0.2 5.8 91 chrX 3306347 intron dnc + chrX 3306392 intron dnc + chrX 3306438 intron dnc + chrX_7_3305001 chrX_3305001 RAL-721 1118 chrX 3408983 3409008 chrX 3409060 3409070 11 75 0.5 1.0 0.8 6.1 87 chrX 3408983 intron,intron CR44999 +,CG12535 - chrX 3409026 intron,intron CR44999 +,CG12535 - chrX 3409070 intron,intron CR44999 +,CG12535 - chrX_11_3405001 chrX_3405001 RAL-721 1119 chrX 3493091 3493113 chrX 3502250 3502272 roo 7 9159 2.5 1.0 1.8 2.5 9181 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502272 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-721 1120 chrX 3597561 3597575 chrX 3619723 3619743 roo 5 22167 2.0 2.0 2.0 1.7 22182 chrX 3597561 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619743 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-721 1121 chrX 3630559 3630566 chrX 3630620 3630642 5 73 0.0 2.0 1.0 2.5 83 chrX 3630559 intron AstA-R1 + chrX 3630600 intron AstA-R1 + chrX 3630642 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-721 1122 chrX 3657413 3657447 chrX 3657493 3657527 11 78 2.5 2.5 2.5 3.1 114 chrX 3657413 intron AstA-R1 + chrX 3657470 intron AstA-R1 + chrX 3657527 intron AstA-R1 + chrX_11_3655001 chrX_3655001 RAL-721 1123 chrX 3866120 3866137 chrX 3866183 3866215 7 74 0.0 2.5 1.2 3.2 95 chrX 3866120 intron yin - chrX 3866168 intron yin - chrX 3866215 intron yin - chrX_7_3865001 chrX_3865001 RAL-721 1124 chrX 3880469 3880480 chrX 3880555 3880566 4 86 0.5 1.5 1.0 2.0 97 chrX 3880469 intergenic VhaAC39-1 + chrX 3880518 intergenic VhaAC39-1 + chrX 3880566 intergenic VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-721 1125 chrX 3881270 3881299 chrX 3881409 3881437 7 139 1.5 3.5 2.5 2.0 167 chrX 3881270 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881437 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-721 1126 chrX 3986865 3986895 chrX 3994498 3994514 412 5 7630 1.5 2.5 2.0 1.7 7649 chrX 3986865 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994514 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-721 1127 chrX 4048499 4048522 chrX 4048575 4048598 7 76 3.5 1.0 2.2 2.2 99 chrX 4048499 3` UTR CR45482 - chrX 4048548 3` UTR CR45482 - chrX 4048598 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-721 1128 chrX 4206228 4206242 chrX 4206342 4206356 6 114 0.5 2.0 1.2 2.7 128 chrX 4206228 intergenic Fas2 - chrX 4206292 intergenic Fas2 - chrX 4206356 intergenic Fas2 - chrX_6_4205001 chrX_4205001 RAL-721 1129 chrX 4396981 4397009 chrX 4397065 4397094 8 82 2.5 2.0 2.2 2.5 113 chrX 4396981 intron CR32773 - chrX 4397038 intron CR32773 - chrX 4397094 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-721 1130 chrX 4731817 4731831 chrX 4736909 4736924 jockey 4 5093 4.5 1.0 2.8 1.1 5107 chrX 4731817 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736924 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-721 1131 chrX 4763254 4763276 chrX 4763740 4763764 Stalker4 7 486 2.5 1.0 1.8 2.5 510 chrX 4763254 intergenic not near genes chrX 4763509 intergenic not near genes chrX 4763764 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-721 1132 chrX 4792397 4792410 chrX 4792815 4792843 jockey 4 428 1.0 3.0 2.0 1.3 446 chrX 4792397 intergenic not near genes chrX 4792620 intergenic not near genes chrX 4792843 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-721 1133 chrX 4827978 4828002 chrX 4835342 4835345 Stalker4 4 7350 1.5 1.5 1.5 1.6 7367 chrX 4827978 intergenic not near genes chrX 4831662 intergenic not near genes chrX 4835345 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-721 1134 chrX 4859884 4859909 chrX 4859993 4860018 5 109 3.5 2.0 2.8 1.3 134 chrX 4859884 intron CG42594 + chrX 4859951 intron CG42594 + chrX 4860018 intron CG42594 + chrX_5_4855001 chrX_4855001 RAL-721 1135 chrX 4931354 4931381 chrX 4931448 4931469 7 92 6.5 6.0 6.2 1.0 115 chrX 4931354 intron CG44774 - chrX 4931412 intron CG44774 - chrX 4931469 intron CG44774 - chrX_7_4930001 chrX_4930001 RAL-721 1136 chrX 4948755 4948769 chrX 4948851 4948866 5 97 3.0 2.5 2.8 1.3 111 chrX 4948755 intron Ptp4E + chrX 4948810 intron Ptp4E + chrX 4948866 intron Ptp4E + chrX_5_4945001 chrX_4945001 RAL-721 1137 chrX 4990049 4990073 chrX 4997263 4997287 roo 4 7214 1.5 1.5 1.5 1.6 7238 chrX 4990049 intron CR44833 - chrX 4993668 intron CR44833 - chrX 4997287 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-721 1138 chrX 5096276 5096302 chrX 5103841 5103867 springer 6 7564 2.0 3.5 2.8 1.6 7591 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103867 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-721 1139 chrX 5277559 5277581 chrX 5277732 5277754 5 173 1.5 2.0 1.8 1.8 195 chrX 5277559 intergenic not near genes chrX 5277656 intergenic not near genes chrX 5277754 intergenic not near genes chrX_5_5275001 chrX_5275001 RAL-721 1140 chrX 5473588 5473612 chrX 5473663 5473681 5 74 3.0 2.0 2.5 1.4 93 chrX 5473588 intron SPR + chrX 5473634 intron SPR + chrX 5473681 intron SPR + chrX_5_5470001 chrX_5470001 RAL-721 1141 chrX 5524848 5524874 chrX 5528711 5528724 412 4 3860 0.5 0.5 0.5 2.7 3876 chrX 5524848 intergenic snoRNA:Psi28S-3342 - chrX 5526786 intergenic not near genes chrX 5528724 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-721 1142 chrX 5798876 5798884 chrX 5799037 5799044 5 161 1.0 2.5 1.8 1.8 168 chrX 5798876 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799044 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-721 1143 chrX 5966798 5966825 chrX 5966880 5966907 10 78 3.0 2.0 2.5 2.9 109 chrX 5966798 intron Grip + chrX 5966852 intron Grip + chrX 5966907 intron Grip + chrX_10_5965001 chrX_5965001 RAL-721 1144 chrX 6009241 6009265 chrX 6009581 6009593 4 337 1.0 2.5 1.8 1.4 352 chrX 6009241 intron mab-21 - chrX 6009417 intron mab-21 - chrX 6009593 intron mab-21 - chrX_4_6005001 chrX_6005001 RAL-721 1145 chrX 6171591 6171614 chrX 6179022 6179047 Quasimodo 4 7432 1.5 2.0 1.8 1.4 7456 chrX 6171591 intron Ca-alpha1T - chrX 6175319 intron Ca-alpha1T - chrX 6179047 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-721 1146 chrX 6185969 6185997 chrX 6186068 6186077 5 95 1.5 2.5 2.0 1.7 108 chrX 6185969 intron Ca-alpha1T - chrX 6186023 intron Ca-alpha1T - chrX 6186077 intron Ca-alpha1T - chrX_5_6185001 chrX_6185001 RAL-721 1147 chrX 6197055 6197074 chrX 6197141 6197143 5 83 2.5 5.0 3.8 1.0 88 chrX 6197055 exon CG32751 - chrX 6197099 exon CG32751 - chrX 6197143 exon CG32751 - chrX_5_6195001 chrX_6195001 RAL-721 1148 chrX 6315158 6315187 chrX 6315288 6315317 6 130 3.5 2.0 2.8 1.6 159 chrX 6315158 intron CG15894 + chrX 6315238 intron CG15894 + chrX 6315317 intron CG15894 + chrX_6_6315001 chrX_6315001 RAL-721 1149 chrX 6335224 6335238 chrX 6337732 6337748 Tirant 5 2507 0.0 5.0 2.5 1.4 2524 chrX 6335224 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337748 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-721 1150 chrX 6392868 6392894 chrX 6397633 6397655 Doc 7 4764 4.0 2.5 3.2 1.7 4787 chrX 6392868 intergenic not near genes chrX 6395262 intergenic not near genes chrX 6397655 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-721 1151 chrX 6562819 6562835 chrX 6571300 6571317 Tirant 5 8482 4.0 3.0 3.5 1.1 8498 chrX 6562819 intron CG34417 + chrX 6567068 intron CG34417 + chrX 6571317 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-721 1152 chrX 6562839 6562850 chrX 6571298 6571317 Tirant 6 8472 1.5 2.5 2.0 2.0 8478 chrX 6562839 intron CG34417 + chrX 6567078 intron CG34417 + chrX 6571317 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-721 1153 chrX 6897593 6897702 chrX 6897669 6897812 4 93 0.5 1.0 0.8 2.2 219 chrX 6897593 intergenic not near genes chrX 6897702 intergenic not near genes chrX 6897812 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-721 1154 chrX 7023599 7023626 chrX 7030989 7031016 Tabor 9 7388 3.5 4.5 4.0 1.8 7417 chrX 7023599 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031016 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-721 1155 chrX 7125243 7125278 chrX 7134402 7134434 roo 7 9156 0.0 1.0 0.5 4.7 9191 chrX 7125243 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134434 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-721 1156 chrX 7268369 7268397 chrX 7268446 7268475 5 74 2.0 0.5 1.2 2.3 106 chrX 7268369 intron CR44357 - chrX 7268422 intron CR44357 - chrX 7268475 intron CR44357 - chrX_5_7265001 chrX_7265001 RAL-721 1157 chrX 7596803 7596821 chrX 7596892 7596910 4 88 1.0 2.0 1.5 1.6 107 chrX 7596803 intergenic not near genes chrX 7596856 intergenic not near genes chrX 7596910 intergenic not near genes chrX_4_7595001 chrX_7595001 RAL-721 1158 chrX 7737168 7737188 chrX 7737249 7737267 4 81 1.5 3.0 2.2 1.2 99 chrX 7737168 intron Tom40 + chrX 7737218 intron Tom40 + chrX 7737267 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-721 1159 chrX 7784238 7784246 chrX 7784540 7784545 jockey 9 301 3.0 4.0 3.5 2.0 307 chrX 7784238 intergenic not near genes chrX 7784392 intergenic not near genes chrX 7784545 intergenic not near genes chrX_9_7780001 chrX_7780001 RAL-721 1160 chrX 7845725 7845757 chrX 7847216 7847247 hopper2 5 1489 2.5 3.0 2.8 1.3 1522 chrX 7845725 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847247 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-721 1161 chrX 8085574 8085603 chrX 8085659 8085682 9 81 2.5 2.0 2.2 2.8 108 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085628 intron,5` UTR CG2256 -,CR45535 + chrX 8085682 intron,5` UTR CG2256 -,CR45535 + chrX_9_8085001 chrX_8085001 RAL-721 1162 chrX 8092296 8092322 chrX 8092381 8092400 4 83 1.5 1.5 1.5 1.6 104 chrX 8092296 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092400 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-721 1163 chrX 8536758 8536780 chrX 8536834 8536856 5 76 2.5 2.0 2.2 1.6 98 chrX 8536758 intron Nrg + chrX 8536807 intron Nrg + chrX 8536856 intron Nrg + chrX_5_8535001 chrX_8535001 RAL-721 1164 chrX 8922335 8922356 chrX 8922768 8922788 jockey 5 430 1.0 2.0 1.5 2.0 453 chrX 8922335 intron rdgA + chrX 8922562 intron rdgA + chrX 8922788 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-721 1165 chrX 9575797 9575805 chrX 9576121 9576129 mdg3 5 324 5.5 5.0 5.2 0.8 332 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576129 intron,exon CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-721 1166 chrX 9791864 9791895 chrX 9791961 9791992 8 95 0.0 1.0 0.5 5.3 128 chrX 9791864 intron CG32698 + chrX 9791928 intron CG32698 + chrX 9791992 intron CG32698 + chrX_8_9790001 chrX_9790001 RAL-721 1167 chrX 8382094 8382094 chrX 9845361 9845361 4 1463267 11.0 9.5 10.2 0.4 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-721 1168 chrX 9915255 9915278 chrX 9915339 9915349 5 81 2.5 2.0 2.2 1.6 94 chrX 9915255 intergenic not near genes chrX 9915302 intergenic not near genes chrX 9915349 intergenic not near genes chrX_5_9915001 chrX_9915001 RAL-721 1169 chrX 10138224 10138235 chrX 10145726 10145739 412 7 7504 2.0 1.5 1.8 2.5 7515 chrX 10138224 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145739 intron,intron RhoU +,CR44894 - chrX_7_10140001 chrX_10140001 RAL-721 1170 chrX 10550332 10550366 chrX 10550410 10550444 8 78 0.0 0.5 0.2 6.7 112 chrX 10550332 intron spri - chrX 10550388 intron spri - chrX 10550444 intron spri - chrX_8_10550001 chrX_10550001 RAL-721 1171 chrX 10550868 10550882 chrX 10552335 10552341 hobo 6 1464 2.5 3.0 2.8 1.6 1473 chrX 10550868 intron spri - chrX 10551604 intron spri - chrX 10552341 intron spri - chrX_6_10550001 chrX_10550001 RAL-721 1172 chrX 10686051 10686076 chrX 10691188 10691213 roo 5 5136 1.0 1.5 1.2 2.3 5162 chrX 10686051 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691213 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-721 1173 chrX 11268579 11268594 chrX 11270071 11270087 hopper2 4 1492 1.5 4.0 2.8 1.1 1508 chrX 11268579 intron CG44422 - chrX 11269333 intron CG44422 - chrX 11270087 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-721 1174 chrX 11922369 11922380 chrX 11922499 11922513 7 131 1.5 1.0 1.2 3.2 144 chrX 11922369 exon Sclp - chrX 11922441 intron Sclp - chrX 11922513 intron Sclp - chrX_7_11920001 chrX_11920001 RAL-721 1175 chrX 12038091 12038114 chrX 12038284 12038308 11 193 4.5 3.0 3.8 2.3 217 chrX 12038091 intergenic not near genes chrX 12038200 intergenic not near genes chrX 12038308 intergenic not near genes chrX_11_12035001 chrX_12035001 RAL-721 1176 chrX 12557153 12557162 chrX 12557228 12557233 4 74 4.5 5.5 5.0 0.7 80 chrX 12557153 intron CG43921 - chrX 12557193 intron CG43921 - chrX 12557233 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-721 1177 chrX 12846809 12846838 chrX 12847576 12847605 8 764 2.5 1.5 2.0 2.7 796 chrX 12846809 intron Pde9 - chrX 12847207 intron Pde9 - chrX 12847605 intron Pde9 - chrX_8_12845001 chrX_12845001 RAL-721 1178 chrX 12953904 12953915 chrX 12954042 12954046 4 136 0.0 2.0 1.0 2.0 142 chrX 12953904 intron hec - chrX 12953975 intron hec - chrX 12954046 intron hec - chrX_4_12950001 chrX_12950001 RAL-721 1179 chrX 13172350 13172381 chrX 13172425 13172457 7 74 1.0 1.5 1.2 3.2 107 chrX 13172350 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172457 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-721 1180 chrX 13236889 13236902 chrX 13236970 13236979 4 80 0.0 1.5 0.8 2.2 90 chrX 13236889 intron mew - chrX 13236934 intron mew - chrX 13236979 intron mew - chrX_4_13235001 chrX_13235001 RAL-721 1181 chrX 13369675 13369706 chrX 13369833 13369869 5 163 1.5 1.5 1.5 2.0 194 chrX 13369675 intron dmrt11E + chrX 13369772 intron dmrt11E + chrX 13369869 intron dmrt11E + chrX_5_13365001 chrX_13365001 RAL-721 1182 chrX 13429476 13429491 chrX 13430625 13430640 jockey 5 1146 0.0 2.5 1.2 2.3 1164 chrX 13429476 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430640 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-721 1183 chrX 13442141 13442170 chrX 13442232 13442261 5 91 1.5 0.5 1.0 2.5 120 chrX 13442141 intergenic not near genes chrX 13442201 intergenic not near genes chrX 13442261 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-721 1184 chrX 13935515 13935523 chrX 13935598 13935606 5 83 5.5 8.0 6.8 0.6 91 chrX 13935515 intron mamo - chrX 13935560 intron mamo - chrX 13935606 intron mamo - chrX_5_13935001 chrX_13935001 RAL-721 1185 chrX 14370694 14370725 chrX 14370784 14370803 8 89 1.5 2.0 1.8 2.9 109 chrX 14370694 intron dpr8 + chrX 14370748 intron dpr8 + chrX 14370803 intron dpr8 + chrX_8_14370001 chrX_14370001 RAL-721 1186 chrX 14636462 14636492 chrX 14641903 14641933 I-element 6 5436 2.0 2.5 2.2 1.9 5471 chrX 14636462 intron NetA - chrX 14639198 intron NetA - chrX 14641933 intron NetA - chrX_6_14635001 chrX_14635001 RAL-721 1187 chrX 14710959 14710984 chrX 14711050 14711075 6 91 0.5 6.5 3.5 1.3 116 chrX 14710959 intron NetB - chrX 14711017 intron NetB - chrX 14711075 intron NetB - chrX_6_14710001 chrX_14710001 RAL-721 1188 chrX 14718152 14718173 chrX 14718237 14718261 6 84 2.0 2.0 2.0 2.0 109 chrX 14718152 intron NetB - chrX 14718206 intron NetB - chrX 14718261 intron NetB - chrX_6_14715001 chrX_14715001 RAL-721 1189 chrX 14806758 14806773 chrX 14806846 14806857 5 87 1.0 0.0 0.5 3.3 99 chrX 14806758 intron rut - chrX 14806808 intron rut - chrX 14806857 intron rut - chrX_5_14805001 chrX_14805001 RAL-721 1190 chrX 14968094 14968097 chrX 14968167 14968175 4 76 0.5 3.5 2.0 1.3 81 chrX 14968094 intron eag + chrX 14968134 intron eag + chrX 14968175 intron eag + chrX_4_14965001 chrX_14965001 RAL-721 1191 chrX 15168734 15168767 chrX 15168823 15168840 4 85 0.0 0.5 0.2 3.3 106 chrX 15168734 intergenic not near genes chrX 15168787 intergenic not near genes chrX 15168840 intergenic not near genes chrX_4_15165001 chrX_15165001 RAL-721 1192 chrX 15358307 15358333 chrX 15358395 15358421 5 86 0.0 1.0 0.5 3.3 114 chrX 15358307 intron acj6 - chrX 15358364 intron acj6 - chrX 15358421 intron acj6 - chrX_5_15355001 chrX_15355001 RAL-721 1193 chrX 15366436 15366459 chrX 15368993 15369016 6 2559 22.5 14.0 18.2 0.3 2580 chrX 15366436 intron acj6 - chrX 15367726 intron acj6 - chrX 15369016 intron acj6 - chrX_6_15365001 chrX_15365001 RAL-721 1194 chrX 15413048 15413086 chrX 15417350 15417366 Juan 11 4294 5.0 3.5 4.2 2.1 4318 chrX 15413048 intron Cngl - chrX 15415207 intron Cngl - chrX 15417366 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-721 1195 chrX 15429235 15429260 chrX 15429317 15429340 4 81 1.5 1.0 1.2 1.8 105 chrX 15429235 intron Cngl - chrX 15429288 intron Cngl - chrX 15429340 intron Cngl - chrX_4_15425001 chrX_15425001 RAL-721 1196 chrX 15536698 15536711 chrX 15536775 15536785 7 75 6.0 7.5 6.8 0.9 87 chrX 15536698 intron Ac13E - chrX 15536742 intron Ac13E - chrX 15536785 intron Ac13E - chrX_7_15535001 chrX_15535001 RAL-721 1197 chrX 15681399 15681421 chrX 15681481 15681503 6 81 4.0 1.0 2.5 1.7 104 chrX 15681399 intergenic not near genes chrX 15681451 intergenic not near genes chrX 15681503 intergenic not near genes chrX_6_15680001 chrX_15680001 RAL-721 1198 chrX 16329438 16329446 chrX 16329515 16329529 7 82 0.0 5.5 2.8 1.8 91 chrX 16329438 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329529 exon CG9919 - chrX_7_16325001 chrX_16325001 RAL-721 1199 chrX 16623488 16623504 chrX 16623574 16623588 4 86 1.0 0.0 0.5 2.7 100 chrX 16623488 intergenic not near genes chrX 16623538 intergenic Rok - chrX 16623588 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-721 1200 chrX 16821235 16821263 chrX 16821315 16821343 5 80 1.0 0.5 0.8 2.8 108 chrX 16821235 intron CG4829 + chrX 16821289 intron CG4829 + chrX 16821343 intron CG4829 + chrX_5_16820001 chrX_16820001 RAL-721 1201 chrX 17282876 17282907 chrX 17282952 17282985 8 76 2.0 0.0 1.0 4.0 109 chrX 17282876 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_8_17280001 chrX_17280001 RAL-721 1202 chrX 17352598 17352623 chrX 17352698 17352726 4 102 0.5 3.0 1.8 1.4 128 chrX 17352598 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352726 intergenic not near genes chrX_4_17350001 chrX_17350001 RAL-721 1203 chrX 17476477 17476489 chrX 17476538 17476539 5 60 2.0 0.5 1.2 2.3 62 chrX 17476477 intron CG43658 - chrX 17476508 intron CG43658 - chrX 17476539 intron CG43658 - chrX_5_17475001 chrX_17475001 RAL-721 1204 chrX 17545006 17545037 chrX 17545088 17545119 8 78 1.5 2.0 1.8 2.9 113 chrX 17545006 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545119 intron CG43658 - chrX_8_17545001 chrX_17545001 RAL-721 1205 chrX 17556958 17556974 chrX 17557442 17557455 mdg1 4 487 3.0 2.5 2.8 1.1 497 chrX 17556958 intron CG43658 - chrX 17557206 intron CG43658 - chrX 17557455 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-721 1206 chrX 17766365 17766376 chrX 17766459 17766473 4 94 1.5 1.0 1.2 1.8 108 chrX 17766365 intergenic not near genes chrX 17766419 intergenic not near genes chrX 17766473 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-721 1207 chrX 17911851 17911868 chrX 17911939 17911951 7 85 0.5 0.5 0.5 4.7 100 chrX 17911851 intron CG6847 + chrX 17911901 intron CG6847 + chrX 17911951 intron CG6847 + chrX_7_17910001 chrX_17910001 RAL-721 1208 chrX 18055906 18055930 chrX 18055985 18056011 6 77 0.0 2.5 1.2 2.7 105 chrX 18055906 intron Sh - chrX 18055958 intron Sh - chrX 18056011 intron Sh - chrX_6_18055001 chrX_18055001 RAL-721 1209 chrX 18194063 18194086 chrX 18194598 18194621 BS 5 534 3.0 1.0 2.0 1.7 558 chrX 18194063 intron Frq2 + chrX 18194342 intron Frq2 + chrX 18194621 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-721 1210 chrX 18486107 18486131 chrX 18486196 18486220 8 89 4.0 3.0 3.5 1.8 113 chrX 18486107 exon psh - chrX 18486164 intron psh - chrX 18486220 intron psh - chrX_8_18485001 chrX_18485001 RAL-721 1211 chrX 18558777 18558800 chrX 18558859 18558882 4 82 2.0 5.0 3.5 0.9 105 chrX 18558777 intron Bx + chrX 18558830 intron Bx + chrX 18558882 intron Bx + chrX_4_18555001 chrX_18555001 RAL-721 1212 chrX 18631754 18631758 chrX 18631816 18631821 4 68 1.5 5.5 3.5 0.9 67 chrX 18631754 intron wgn - chrX 18631788 intron wgn - chrX 18631821 intron wgn - chrX_4_18630001 chrX_18630001 RAL-721 1213 chrX 18645015 18645047 chrX 18645113 18645141 4 96 2.0 1.0 1.5 1.6 126 chrX 18645015 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645141 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-721 1214 chrX 19060407 19060434 chrX 19065191 19065218 Doc 6 4784 2.0 2.5 2.2 1.9 4811 chrX 19060407 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065218 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-721 1215 chrX 19099658 19099675 chrX 19099739 19099758 8 82 4.5 1.0 2.8 2.1 100 chrX 19099658 intergenic not near genes chrX 19099708 intergenic not near genes chrX 19099758 intergenic not near genes chrX_8_19095001 chrX_19095001 RAL-721 1216 chrX 19106826 19106856 chrX 19106900 19106911 6 72 1.0 1.0 1.0 3.0 85 chrX 19106826 intergenic not near genes chrX 19106868 intergenic not near genes chrX 19106911 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-721 1217 chrX 13057298 13057300 chrX 19242812 19242814 9 6185514 1.5 3.5 2.5 2.6 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_9_16150001 chrX_16150001 RAL-721 1218 chrX 19285811 19285826 chrX 19286022 19286037 6 211 2.0 2.0 2.0 2.0 226 chrX 19285811 intron CG8034 - chrX 19285924 intron CG8034 - chrX 19286037 intron CG8034 - chrX_6_19285001 chrX_19285001 RAL-721 1219 chrX 19380169 19380176 chrX 19380410 19380417 pogo 4 240 3.0 1.5 2.2 1.2 248 chrX 19380169 intron kek5 + chrX 19380293 intron kek5 + chrX 19380417 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-721 1220 chrX 19472123 19472155 chrX 19472687 19472713 jockey 11 564 2.0 2.0 2.0 3.7 590 chrX 19472123 intergenic kek5 + chrX 19472418 intergenic not near genes chrX 19472713 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-721 1221 chrX 19500566 19500746 chrX 19500643 19500833 8 80 0.0 0.5 0.2 6.7 267 chrX 19500566 intron,intron CG14200 +,Pfrx + chrX 19500700 intron,intron CG14200 +,Pfrx + chrX 19500833 intron,intron CG14200 +,Pfrx + chrX_8_19500001 chrX_19500001 RAL-721 1222 chrX 19576560 19576583 chrX 19576638 19576661 5 77 0.5 1.0 0.8 2.8 101 chrX 19576560 intron Tao - chrX 19576610 intron Tao - chrX 19576661 intron Tao - chrX_5_19575001 chrX_19575001 RAL-721 1223 chrX 19593950 19593976 chrX 19594031 19594061 11 83 1.5 3.0 2.2 3.4 111 chrX 19593950 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594061 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-721 1224 chrX 19662033 19662057 chrX 19662256 19662278 5 222 1.0 2.0 1.5 2.0 245 chrX 19662033 intron CG14223 - chrX 19662156 intron CG14223 - chrX 19662278 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-721 1225 chrX 19710080 19710099 chrX 19711866 19711885 S-element 9 1786 2.5 3.5 3.0 2.2 1805 chrX 19710080 intron meso18E - chrX 19710982 intron meso18E - chrX 19711885 intron meso18E - chrX_9_19710001 chrX_19710001 RAL-721 1226 chrX 19822829 19822864 chrX 19822994 19823031 12 163 0.5 1.0 0.8 6.7 202 chrX 19822829 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823031 intergenic skpE - chrX_12_19820001 chrX_19820001 RAL-721 1227 chrX 19897379 19897416 chrX 19897456 19897488 4 76 0.5 2.0 1.2 1.8 109 chrX 19897379 intron Hers + chrX 19897434 intron Hers + chrX 19897488 intron Hers + chrX_4_19895001 chrX_19895001 RAL-721 1228 chrX 20052796 20052812 chrX 20052875 20052893 6 78 3.0 0.0 1.5 2.4 97 chrX 20052796 intron Dop2R - chrX 20052844 intron Dop2R - chrX 20052893 intron Dop2R - chrX_6_20050001 chrX_20050001 RAL-721 1229 chrX 20105195 20105229 chrX 20105313 20105333 11 108 30.0 30.5 30.2 0.4 138 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105333 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-721 1230 chrX 20137245 20137275 chrX 20137322 20137352 4 76 1.5 3.0 2.2 1.2 107 chrX 20137245 intron CG15322 + chrX 20137298 intron CG15322 + chrX 20137352 intron CG15322 + chrX_4_20135001 chrX_20135001 RAL-721 1231 chrX 20144858 20144872 chrX 20145011 20145042 4 166 2.5 0.5 1.5 1.6 184 chrX 20144858 intergenic not near genes chrX 20144950 intergenic not near genes chrX 20145042 intergenic not near genes chrX_4_20140001 chrX_20140001 RAL-721 1232 chrX 20312881 20312909 chrX 20312959 20312987 8 77 3.0 1.5 2.2 2.5 106 chrX 20312881 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312987 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-721 1233 chrX 20377327 20377336 chrX 20378794 20378802 hobo 4 1466 7.0 5.0 6.0 0.6 1475 chrX 20377327 intergenic not near genes chrX 20378064 intergenic not near genes chrX 20378802 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-721 1234 chrX 20377345 20377349 chrX 20378793 20378811 hobo 4 1460 4.5 5.0 4.8 0.7 1466 chrX 20377345 intergenic not near genes chrX 20378078 intergenic not near genes chrX 20378811 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-721 1235 chrX 20435454 20435480 chrX 20435539 20435569 7 87 2.5 1.0 1.8 2.5 115 chrX 20435454 intron CG1695 + chrX 20435512 intron CG1695 + chrX 20435569 intron CG1695 + chrX_7_20435001 chrX_20435001 RAL-721 1236 chrX 20441925 20441937 chrX 20442008 20442020 5 81 4.0 8.5 6.2 0.7 95 chrX 20441925 exon CG1695 + chrX 20441972 exon CG1695 + chrX 20442020 exon CG1695 + chrX_5_20440001 chrX_20440001 RAL-721 1237 chrX 20836047 20836079 chrX 20836134 20836147 4 83 2.0 1.0 1.5 1.6 100 chrX 20836047 intron shakB - chrX 20836097 intron shakB - chrX 20836147 intron shakB - chrX_4_20835001 chrX_20835001 RAL-721 1238 chrX 20836729 20836756 chrX 20844331 20844350 roo 6 7599 0.5 1.0 0.8 3.3 7621 chrX 20836729 intron shakB - chrX 20840540 intron shakB - chrX 20844350 intron shakB - chrX_6_20840001 chrX_20840001 RAL-721 1239 chrX 20940721 20940756 chrX 20942190 20942225 hobo 6 1467 5.0 3.0 4.0 1.2 1504 chrX 20940721 intergenic not near genes chrX 20941473 intergenic not near genes chrX 20942225 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-721 1240 chrX 21086131 21086162 chrX 21087157 21087178 jockey 5 1026 2.5 1.5 2.0 1.7 1047 chrX 21086131 intergenic not near genes chrX 21086654 intergenic not near genes chrX 21087178 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-721 1241 chrX 21254650 21254661 chrX 21255565 21255577 hopper2 6 915 3.0 0.0 1.5 2.4 927 chrX 21254650 intron CG32521 - chrX 21255114 intron CG32521 - chrX 21255577 intron CG32521 - chrX_6_21255001 chrX_21255001 RAL-721 1242 chrX 21419725 21419734 chrX 21419799 21419822 4 82 0.5 2.5 1.5 1.6 97 chrX 21419725 intergenic not near genes chrX 21419774 intergenic not near genes chrX 21419822 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-721 1243 chrX 21474409 21474433 chrX 21474775 21474799 1731 4 366 4.0 2.0 3.0 1.0 390 chrX 21474409 intergenic not near genes chrX 21474604 intergenic not near genes chrX 21474799 intergenic not near genes chrX_4_21470001 chrX_21470001 RAL-721 1244 chrX 21492273 21492303 chrX 21492386 21492416 5 107 1.0 0.5 0.8 2.8 143 chrX 21492273 intergenic not near genes chrX 21492344 intergenic not near genes chrX 21492416 intergenic not near genes chrX_5_21490001 chrX_21490001 RAL-721 1245 chrX 21500564 21500587 chrX 21500765 21500786 4 200 0.0 2.0 1.0 2.0 222 chrX 21500564 intron CR45082 - chrX 21500675 intron CR45082 - chrX 21500786 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-721 1246 chrX 22525848 22525877 chrX 22525924 22525949 7 75 1.0 2.5 1.8 2.5 101 chrX 22525848 intron CG17600 + chrX 22525898 intron CG17600 + chrX 22525949 intron CG17600 + chrX_7_22525001 chrX_22525001 RAL-721 1247 chrX 22697495 22697524 chrX 22701791 22701821 Juan 5 4295 3.0 2.0 2.5 1.4 4326 chrX 22697495 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701821 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-721 1248 chrX 22798775 22798801 chrX 22798892 22798917 4 115 1.5 0.0 0.8 2.2 142 chrX 22798775 intergenic not near genes chrX 22798846 intergenic not near genes chrX 22798917 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-721 1249 chrX 22922517 22922546 chrX 22922593 22922607 4 74 2.0 2.5 2.2 1.2 90 chrX 22922517 intergenic not near genes chrX 22922562 intergenic not near genes chrX 22922607 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-721 1250 chrX 22996309 22996339 chrX 23003543 23003573 roo 7 7233 2.5 1.5 2.0 2.3 7264 chrX 22996309 intron,intron stnA -,stnB - chrX 22999941 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-721 1251 chrY 975592 975820 chrY 975709 975967 6 93 77.0 75.5 76.2 0.1 375 chrY 975592 intergenic not near genes chrY 975780 intergenic not near genes chrY 975967 intergenic not near genes chrY_6_975001 chrY_975001 RAL-721