SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47457	47484	chr2L	52562	52574	jockey	9	5102	6.5	3.0	4.8	1.6	5117	chr2L	47457	intron	Cda5 -	chr2L	50016	intron	Cda5 -	chr2L	52574	intron	Cda5 -	chr2L_9_50001	chr2L_50001	RAL-716
11	chr2L	686920	686951	chr2L	695957	695991	roo	5	9039	3.0	3.5	3.2	1.2	9071	chr2L	686920	intron	ds -	chr2L	691456	intron	ds -	chr2L	695991	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-716
13	chr2L	770467	770483	chr2L	772248	772264	Bari1	5	1779	4.0	1.5	2.8	1.3	1797	chr2L	770467	intergenic	not near genes	chr2L	771366	intergenic	not near genes	chr2L	772264	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-716
19	chr2L	976877	976910	chr2L	984513	984545	roo	4	7634	2.0	3.0	2.5	1.1	7668	chr2L	976877	intergenic	not near genes	chr2L	980711	intergenic	not near genes	chr2L	984545	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-716
24	chr2L	1220127	1220161	chr2L	1227593	1227624	blood	6	7465	1.0	0.0	0.5	4.0	7497	chr2L	1220127	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227624	intron	CG42329 +	chr2L_6_1220001	chr2L_1220001	RAL-716
33	chr2L	1711354	1711388	chr2L	1711678	1711712	mdg3	10	323	3.0	3.5	3.2	2.4	358	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711533	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_10_1710001	chr2L_1710001	RAL-716
36	chr2L	2100383	2100407	chr2L	2109534	2109558	roo	5	9151	2.5	2.0	2.2	1.6	9175	chr2L	2100383	intron	dpr3 -	chr2L	2104970	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-716
37	chr2L	2112121	2112145	chr2L	2119774	2119798	opus	6	7652	1.5	1.5	1.5	2.4	7677	chr2L	2112121	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119798	intergenic	not near genes	chr2L_6_2115001	chr2L_2115001	RAL-716
38	chr2L	2294049	2294069	chr2L	2299245	2299268	copia	4	5194	2.5	3.0	2.8	1.1	5219	chr2L	2294049	intergenic	not near genes	chr2L	2296658	intergenic	not near genes	chr2L	2299268	intergenic	not near genes	chr2L_4_2295001	chr2L_2295001	RAL-716
49	chr2L	3073035	3073061	chr2L	3078238	3078263	copia	7	5203	2.5	2.5	2.5	2.0	5228	chr2L	3073035	intron	toc -	chr2L	3075649	intron	toc -	chr2L	3078263	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-716
62	chr2L	4066040	4066063	chr2L	4068865	4068888	Juan	5	2825	2.0	3.5	2.8	1.3	2848	chr2L	4066040	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068888	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-716
66	chr2L	4601703	4601732	chr2L	4609143	4609173	mdg1	10	7440	1.5	2.5	2.0	3.3	7470	chr2L	4601703	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609173	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-716
68	chr2L	4918168	4918180	chr2L	4923241	4923253	jockey	5	5072	1.0	0.0	0.5	3.3	5085	chr2L	4918168	intron	hoe1 -	chr2L	4920710	intron	hoe1 -	chr2L	4923253	intron	hoe1 -	chr2L_5_4920001	chr2L_4920001	RAL-716
70	chr2L	4953515	4953538	chr2L	4953756	4953777	pogo	5	241	2.0	0.5	1.2	2.3	262	chr2L	4953515	intergenic	Jon25Bii -	chr2L	4953646	intergenic	not near genes	chr2L	4953777	intergenic	not near genes	chr2L_5_4950001	chr2L_4950001	RAL-716
80	chr2L	5827721	5827728	chr2L	5836724	5836736	roo	5	9007	2.0	4.0	3.0	1.2	9015	chr2L	5827721	intron	TrissinR +	chr2L	5832228	intron	TrissinR +	chr2L	5836736	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-716
81	chr2L	5827731	5827741	chr2L	5836723	5836749	roo	4	9004	0.5	4.0	2.2	1.2	9018	chr2L	5827731	intron	TrissinR +	chr2L	5832240	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_4_5830001	chr2L_5830001	RAL-716
91	chr2L	6363148	6363182	chr2L	6366070	6366098	Burdock	5	2920	1.5	2.5	2.0	1.7	2950	chr2L	6363148	intergenic	not near genes	chr2L	6364623	intergenic	not near genes	chr2L	6366098	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	RAL-716
92	chr2L	6426858	6426888	chr2L	6445118	6445137	roo	9	18257	1.5	5.0	3.2	2.1	18279	chr2L	6426858	3` UTR	CG9527 -	chr2L	6435998	intron	CG9527 -	chr2L	6445137	exon	CG9527 -	chr2L_9_6435001	chr2L_6435001	RAL-716
100	chr2L	7343324	7343332	chr2L	7350440	7350448	roo	5	7116	4.5	2.5	3.5	1.1	7124	chr2L	7343324	intron	Wnt6 +	chr2L	7346886	intron	Wnt6 +	chr2L	7350448	intron	Wnt6 +	chr2L_5_7345001	chr2L_7345001	RAL-716
107	chr2L	7977094	7977112	chr2L	7984070	7984078	297	9	6974	2.0	2.0	2.0	3.0	6984	chr2L	7977094	intron	Snoo -	chr2L	7980586	intron	Snoo -	chr2L	7984078	intron,5` UTR	Snoo -,CG7231 +	chr2L_9_7980001	chr2L_7980001	RAL-716
109	chr2L	8013624	8013642	chr2L	8018827	8018838	copia	4	5201	1.5	0.0	0.8	2.2	5214	chr2L	8013624	intron	Tg +	chr2L	8016231	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-716
119	chr2L	8594474	8594496	chr2L	8601518	8601550	297	5	7049	2.5	1.0	1.8	1.8	7076	chr2L	8594474	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598012	intron	Sema-1a +	chr2L	8601550	intron	Sema-1a +	chr2L_5_8595001	chr2L_8595001	RAL-716
120	chr2L	8723115	8723146	chr2L	8731492	8731523	Tirant	7	8377	2.0	3.5	2.8	1.8	8408	chr2L	8723115	intron	raw -	chr2L	8727319	intron	raw -	chr2L	8731523	intron	raw -	chr2L_7_8725001	chr2L_8725001	RAL-716
123	chr2L	9000277	9000309	chr2L	9007787	9007819	roo	7	7510	3.5	2.0	2.8	1.8	7542	chr2L	9000277	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007819	intergenic	not near genes	chr2L_7_9000001	chr2L_9000001	RAL-716
128	chr2L	9393500	9393529	chr2L	9396466	9396496	jockey	5	2966	3.0	5.0	4.0	1.0	2996	chr2L	9393500	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396496	intron	Shawl -	chr2L_5_9390001	chr2L_9390001	RAL-716
132	chr2L	9973739	9973759	chr2L	9980844	9980877	HMS-Beagle	5	7113	3.0	3.5	3.2	1.2	7138	chr2L	9973739	intergenic	not near genes	chr2L	9977308	intergenic	not near genes	chr2L	9980877	intergenic	not near genes	chr2L_5_9975001	chr2L_9975001	RAL-716
135	chr2L	10156323	10156351	chr2L	10163793	10163820	blood	11	7467	4.5	3.0	3.8	2.3	7497	chr2L	10156323	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163820	intron	CG44153 -	chr2L_11_10160001	chr2L_10160001	RAL-716
140	chr2L	10592849	10592870	chr2L	10600511	10600532	opus	4	7661	1.5	1.0	1.2	1.8	7683	chr2L	10592849	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600532	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-716
144	chr2L	10862844	10862878	chr2L	10864458	10864463	Rt1c	11	1609	5.0	6.0	5.5	1.7	1619	chr2L	10862844	3` UTR	CR43807 -	chr2L	10863654	intron	CR43807 -	chr2L	10864463	3` UTR	CR43807 -	chr2L_11_10860001	chr2L_10860001	RAL-716
146	chr2L	10946952	10946973	chr2L	10956167	10956188	roo	10	9213	5.5	4.0	4.8	1.7	9236	chr2L	10946952	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956188	intron	dpr2 -	chr2L_10_10950001	chr2L_10950001	RAL-716
150	chr2L	11713510	11713539	chr2L	11720978	11721006	blood	12	7467	4.5	4.5	4.5	2.2	7496	chr2L	11713510	intergenic	not near genes	chr2L	11717258	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_12_11715001	chr2L_11715001	RAL-716
159	chr2L	12739193	12739205	chr2L	12743974	12743986	Doc	4	4781	3.5	5.5	4.5	0.7	4793	chr2L	12739193	intron	MRP +	chr2L	12741590	intron	MRP +	chr2L	12743986	exon	MRP +	chr2L_4_12740001	chr2L_12740001	RAL-716
162	chr2L	12861695	12861730	chr2L	12863162	12863174	hobo	10	1464	1.0	4.0	2.5	2.9	1479	chr2L	12861695	intergenic	not near genes	chr2L	12862434	intergenic	not near genes	chr2L	12863174	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-716
165	chr2L	13405650	13405677	chr2L	13410445	13410474	Doc	6	4794	4.5	1.5	3.0	1.5	4824	chr2L	13405650	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_6_13405001	chr2L_13405001	RAL-716
166	chr2L	13481451	13481459	chr2L	13482058	13482058	jockey	5	605	3.0	4.0	3.5	1.1	607	chr2L	13481451	intron	CG42784 +	chr2L	13481754	intron	CG42784 +	chr2L	13482058	intron	CG42784 +	chr2L_5_13480001	chr2L_13480001	RAL-716
178	chr2L	14642579	14642598	chr2L	14651741	14651761	roo	5	9163	2.0	2.5	2.2	1.6	9182	chr2L	14642579	intron	osp -	chr2L	14647170	intron	osp -	chr2L	14651761	intron	osp -	chr2L_5_14645001	chr2L_14645001	RAL-716
180	chr2L	14803889	14803913	chr2L	14809092	14809116	copia	10	5202	0.0	3.5	1.8	3.6	5227	chr2L	14803889	intergenic	not near genes	chr2L	14806502	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_10_14805001	chr2L_14805001	RAL-716
182	chr2L	14889958	14889983	chr2L	14890382	14890408	jockey	11	425	3.0	2.0	2.5	3.1	450	chr2L	14889958	intergenic	not near genes	chr2L	14890183	intergenic	not near genes	chr2L	14890408	intergenic	not near genes	chr2L_11_14890001	chr2L_14890001	RAL-716
186	chr2L	15586411	15586433	chr2L	15593462	15593484	297	5	7052	2.0	1.0	1.5	2.0	7073	chr2L	15586411	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593484	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-716
191	chr2L	15956027	15956051	chr2L	15957494	15957517	hobo	6	1466	3.0	1.0	2.0	2.0	1490	chr2L	15956027	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957517	intron	beat-Ib -	chr2L_6_15955001	chr2L_15955001	RAL-716
192	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	6	145889	14.5	16.0	15.2	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-716
193	chr2L	16141172	16141187	chr2L	16146373	16146394	copia	4	5206	0.5	0.5	0.5	2.7	5222	chr2L	16141172	intergenic	not near genes	chr2L	16143783	intergenic	not near genes	chr2L	16146394	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-716
195	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	7	145889	14.5	16.0	15.2	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-716
197	chr2L	16280256	16280284	chr2L	16281427	16281442	1360	8	1169	5.0	3.5	4.2	1.5	1186	chr2L	16280256	intron	crp -	chr2L	16280849	intron	crp -	chr2L	16281442	intron	crp -	chr2L_8_16280001	chr2L_16280001	RAL-716
205	chr2L	17167564	17167594	chr2L	17167805	17167835	pogo	5	241	1.0	0.5	0.8	2.8	271	chr2L	17167564	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167835	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17165001	chr2L_17165001	RAL-716
207	chr2L	17273204	17273226	chr2L	17277984	17278009	F-element	5	4781	4.5	4.5	4.5	0.9	4805	chr2L	17273204	intergenic	not near genes	chr2L	17275606	intergenic	not near genes	chr2L	17278009	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-716
212	chr2L	18051874	18051909	chr2L	18061021	18061056	roo	6	9146	1.0	2.5	1.8	2.1	9182	chr2L	18051874	intron	rdo +	chr2L	18056465	intron	rdo +	chr2L	18061056	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-716
223	chr2L	19345018	19345050	chr2L	19357227	19357249	blood	5	12199	1.0	2.0	1.5	2.0	12231	chr2L	19345018	intron	dnt -	chr2L	19351134	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-716
230	chr2L	19620092	19620130	chr2L	19621081	19621099	jockey	6	986	1.0	4.0	2.5	1.7	1007	chr2L	19620092	intron	Lar +	chr2L	19620596	intron	Lar +	chr2L	19621099	intron	Lar +	chr2L_6_19620001	chr2L_19620001	RAL-716
233	chr2L	19703545	19703568	chr2L	19712681	19712693	roo	6	9133	2.0	1.0	1.5	2.4	9148	chr2L	19703545	intron	Lar +	chr2L	19708119	intron	Lar +	chr2L	19712693	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-716
234	chr2L	19737361	19737383	chr2L	19740823	19740848	1360	10	3465	3.5	2.5	3.0	2.5	3487	chr2L	19737361	intergenic	Nf-YB +	chr2L	19739104	intergenic	not near genes	chr2L	19740848	intergenic	not near genes	chr2L_10_19735001	chr2L_19735001	RAL-716
235	chr2L	19762810	19762836	chr2L	19763052	19763060	pogo	10	239	0.5	0.5	0.5	6.7	250	chr2L	19762810	5` UTR	fbp -	chr2L	19762935	intron	fbp -	chr2L	19763060	intron	fbp -	chr2L_10_19760001	chr2L_19760001	RAL-716
245	chr2L	20272112	20272141	chr2L	20282823	20282852	copia	6	10710	2.0	1.0	1.5	2.4	10740	chr2L	20272112	intergenic	not near genes	chr2L	20277482	intergenic	not near genes	chr2L	20282852	intergenic	not near genes	chr2L_6_20275001	chr2L_20275001	RAL-716
252	chr2L	20576228	20576247	chr2L	20583695	20583715	blood	6	7468	2.5	1.5	2.0	2.0	7487	chr2L	20576228	intergenic	not near genes	chr2L	20579972	intergenic	not near genes	chr2L	20583715	3` UTR	CR44909 -	chr2L_6_20575001	chr2L_20575001	RAL-716
257	chr2L	20901471	20901490	chr2L	20902632	20902654	1360	4	1163	0.0	0.5	0.2	3.3	1183	chr2L	20901471	intron,intron	CG43739 -,sky -	chr2L	20902062	intron,intron	CG43739 -,sky -	chr2L	20902654	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-716
259	chr2L	21020274	21020294	chr2L	21023951	21023971	NOF	8	3677	5.0	3.0	4.0	1.6	3697	chr2L	21020274	intron	CG42238 -	chr2L	21022122	intron	CG42238 -	chr2L	21023971	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	RAL-716
260	chr2L	21041133	21041165	chr2L	21049394	21049414	Tirant	8	8256	2.5	0.0	1.2	3.6	8281	chr2L	21041133	intron	CG42238 -	chr2L	21045274	intron	CG42238 -	chr2L	21049414	intron	CG42238 -	chr2L_8_21045001	chr2L_21045001	RAL-716
264	chr2L	21597031	21597047	chr2L	21604775	21604791	roo	4	7742	1.5	1.5	1.5	1.6	7760	chr2L	21597031	intergenic	not near genes	chr2L	21600911	intergenic	not near genes	chr2L	21604791	intergenic	not near genes	chr2L_4_21600001	chr2L_21600001	RAL-716
269	chr2L	21981684	21981714	chr2L	21990849	21990874	roo	11	9164	3.0	2.0	2.5	3.1	9190	chr2L	21981684	exon	CG2528 -	chr2L	21986279	intron	CG2528 -	chr2L	21990874	exon	CG2528 -	chr2L_11_21985001	chr2L_21985001	RAL-716
274	chr2L	23006516	23006536	chr2L	23007191	23007212	Osvaldo	5	676	2.0	4.5	3.2	1.2	696	chr2L	23006516	intron	Cht3 -	chr2L	23006864	intron	Cht3 -	chr2L	23007212	intron	Cht3 -	chr2L_5_23005001	chr2L_23005001	RAL-716
276	chr2R	529333	529350	chr2R	537958	537967	Max-element	5	8623	0.5	2.5	1.5	2.0	8634	chr2R	529333	intron	CG40378 +	chr2R	533650	intron	CG40378 +	chr2R	537967	intron	CG40378 +	chr2R_5_530001	chr2R_530001	RAL-716
277	chr2R	1082366	1082377	chr2R	1087140	1087153	Doc	4	4774	5.5	2.5	4.0	0.8	4787	chr2R	1082366	intron	rl +	chr2R	1084760	intron	rl +	chr2R	1087153	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-716
281	chr2R	4622951	4622987	chr2R	4624109	4624143	1360	13	1155	2.5	0.5	1.5	5.2	1192	chr2R	4622951	intergenic	CR44101 -	chr2R	4623547	intergenic	not near genes	chr2R	4624143	intergenic	not near genes	chr2R_13_4620001	chr2R_4620001	RAL-716
301	chr2R	6096732	6096741	chr2R	6101915	6101939	BS	4	5192	6.5	5.0	5.8	0.6	5207	chr2R	6096732	intron	EcR -	chr2R	6099336	intron	EcR -	chr2R	6101939	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-716
307	chr2R	7139947	7139954	chr2R	7141422	7141444	hopper2	4	1487	0.5	8.5	4.5	0.7	1497	chr2R	7139947	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141444	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-716
308	chr2R	7235826	7235845	chr2R	7240915	7240934	jockey	5	5091	2.0	3.0	2.5	1.4	5108	chr2R	7235826	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240934	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-716
311	chr2R	7608412	7608431	chr2R	7613615	7613631	I-element	7	5200	2.0	1.5	1.8	2.5	5219	chr2R	7608412	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613631	intron	CG1358 -	chr2R_7_7610001	chr2R_7610001	RAL-716
313	chr2R	7815678	7815686	chr2R	7822147	7822155	Burdock	4	6469	2.5	3.5	3.0	1.0	6477	chr2R	7815678	intergenic	CG1882 +	chr2R	7818916	intergenic	not near genes	chr2R	7822155	3` UTR	cathD -	chr2R_4_7815001	chr2R_7815001	RAL-716
314	chr2R	7869188	7869214	chr2R	7873968	7874000	Doc	6	4784	3.5	1.0	2.2	1.9	4812	chr2R	7869188	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7874000	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-716
319	chr2R	8398228	8398244	chr2R	8403009	8403018	Doc	4	4779	2.5	6.0	4.2	0.8	4790	chr2R	8398228	intron	CG2121 -	chr2R	8400623	intron	CG2121 -	chr2R	8403018	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-716
323	chr2R	8722762	8722789	chr2R	8723003	8723030	pogo	11	238	2.5	0.5	1.5	4.4	268	chr2R	8722762	intron	CG14767 -	chr2R	8722896	intron	CG14767 -	chr2R	8723030	intron	CG14767 -	chr2R_11_8720001	chr2R_8720001	RAL-716
324	chr2R	9151314	9151335	chr2R	9157776	9157800	Burdock	6	6467	1.5	2.0	1.8	2.1	6486	chr2R	9151314	3` UTR	CG30345 +	chr2R	9154557	intergenic	not near genes	chr2R	9157800	intergenic	CG8008 -	chr2R_6_9150001	chr2R_9150001	RAL-716
325	chr2R	9212693	9212724	chr2R	9213179	9213193	roo	9	481	4.5	4.5	4.5	1.6	500	chr2R	9212693	intergenic	CR45309 +	chr2R	9212943	intergenic	CR45309 +	chr2R	9213193	5` UTR	CR45309 +	chr2R_9_9210001	chr2R_9210001	RAL-716
328	chr2R	9945455	9945458	chr2R	9945638	9945648	BS	4	191	4.0	4.0	4.0	0.8	193	chr2R	9945455	intron	Mef2 -	chr2R	9945552	intron	Mef2 -	chr2R	9945648	intron	Mef2 -	chr2R_4_9945001	chr2R_9945001	RAL-716
336	chr2R	10585574	10585585	chr2R	10594154	10594167	Tirant	4	8582	4.0	2.5	3.2	1.0	8593	chr2R	10585574	intron	psq +	chr2R	10589870	intron	psq +	chr2R	10594167	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-716
344	chr2R	10948027	10948062	chr2R	10955576	10955613	17.6	12	7549	0.5	2.0	1.2	5.5	7586	chr2R	10948027	intergenic	not near genes	chr2R	10951820	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_12_10950001	chr2R_10950001	RAL-716
346	chr2R	11009812	11009846	chr2R	11018986	11019015	roo	4	9169	1.0	3.0	2.0	1.3	9203	chr2R	11009812	intron	luna -	chr2R	11014414	intron	luna -	chr2R	11019015	intron	luna -	chr2R_4_11010001	chr2R_11010001	RAL-716
347	chr2R	11019878	11019900	chr2R	11024944	11024966	jockey	5	5058	2.0	3.0	2.5	1.4	5088	chr2R	11019878	intron	luna -	chr2R	11022422	intron	luna -	chr2R	11024966	intron	luna -	chr2R_5_11020001	chr2R_11020001	RAL-716
351	chr2R	11472649	11472670	chr2R	11473846	11473866	pogo	6	1194	3.5	3.5	3.5	1.3	1217	chr2R	11472649	intergenic	not near genes	chr2R	11473258	intergenic	not near genes	chr2R	11473866	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-716
359	chr2R	12501692	12501712	chr2R	12503854	12503867	Rt1c	4	2160	3.5	5.5	4.5	0.7	2175	chr2R	12501692	intron	fdl -	chr2R	12502780	intron	fdl -	chr2R	12503867	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-716
362	chr2R	12707522	12707541	chr2R	12715888	12715907	roo	4	8364	1.0	0.5	0.8	2.2	8385	chr2R	12707522	intron	CG42663 +	chr2R	12711714	intron	CG42663 +	chr2R	12715907	intron	CG42663 +	chr2R_4_12710001	chr2R_12710001	RAL-716
363	chr2R	12789302	12789320	chr2R	12797665	12797672	roo	4	8360	1.5	1.0	1.2	1.8	8370	chr2R	12789302	intron,3` UTR	sca +,CR45137 -	chr2R	12793487	intron,intron	sca +,CR45137 -	chr2R	12797672	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-716
364	chr2R	12819461	12819471	chr2R	12824528	12824540	jockey	4	5068	1.0	6.0	3.5	0.9	5079	chr2R	12819461	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824540	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-716
365	chr2R	13136841	13136868	chr2R	13141639	13141655	Doc	9	4795	3.0	4.0	3.5	2.0	4814	chr2R	13136841	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141655	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-716
372	chr2R	13580514	13580534	chr2R	13580864	13580883	jockey	4	350	0.5	3.5	2.0	1.3	369	chr2R	13580514	3` UTR	CG6191 -	chr2R	13580698	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580883	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-716
377	chr2R	13905603	13905634	chr2R	13907585	13907605	Rt1a	5	1979	2.5	4.0	3.2	1.2	2002	chr2R	13905603	intron	shot -	chr2R	13906604	intron	shot -	chr2R	13907605	intron	shot -	chr2R_5_13905001	chr2R_13905001	RAL-716
381	chr2R	14467305	14467327	chr2R	14476463	14476483	roo	6	9157	1.5	3.0	2.2	1.9	9178	chr2R	14467305	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476483	5` UTR	CR44462 +	chr2R_6_14470001	chr2R_14470001	RAL-716
388	chr2R	15004726	15004736	chr2R	15005055	15005065	jockey	4	329	1.0	1.0	1.0	2.0	339	chr2R	15004726	intergenic	not near genes	chr2R	15004896	intergenic	not near genes	chr2R	15005065	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	RAL-716
389	chr2R	15119318	15119351	chr2R	15127799	15127808	Tirant	9	8477	2.0	2.5	2.2	2.8	8490	chr2R	15119318	intron	chn +	chr2R	15123563	intron	chn +	chr2R	15127808	intron	chn +	chr2R_9_15120001	chr2R_15120001	RAL-716
406	chr2R	17147251	17147267	chr2R	17152282	17152298	jockey	4	5031	2.0	4.0	3.0	1.0	5047	chr2R	17147251	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152298	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-716
408	chr2R	17176357	17176389	chr2R	17182546	17182579	diver	5	6186	2.0	1.0	1.5	2.0	6222	chr2R	17176357	intergenic	not near genes	chr2R	17179468	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_5_17175001	chr2R_17175001	RAL-716
409	chr2R	17236515	17236531	chr2R	17241719	17241735	copia	6	5204	1.0	2.5	1.8	2.1	5220	chr2R	17236515	intron	mbl +	chr2R	17239125	intron	mbl +	chr2R	17241735	intron	mbl +	chr2R_6_17235001	chr2R_17235001	RAL-716
410	chr2R	17236532	17236541	chr2R	17241710	17241743	copia	5	5192	0.5	1.0	0.8	2.8	5211	chr2R	17236532	intron	mbl +	chr2R	17239138	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-716
414	chr2R	17784026	17784050	chr2R	17784265	17784270	pogo	4	234	0.0	2.5	1.2	1.8	244	chr2R	17784026	intergenic	mir-31a -	chr2R	17784148	intergenic	mir-31a -	chr2R	17784270	intergenic	mir-31a -	chr2R_4_17780001	chr2R_17780001	RAL-716
417	chr2R	18358392	18358424	chr2R	18372604	18372636	roo	6	14212	3.0	0.5	1.8	2.1	14244	chr2R	18358392	intergenic	not near genes	chr2R	18365514	intergenic	not near genes	chr2R	18372636	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	RAL-716
421	chr2R	18575817	18575828	chr2R	18581983	18582003	3S18	8	6179	2.5	4.0	3.2	1.9	6186	chr2R	18575817	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582003	intron	GEFmeso -	chr2R_8_18575001	chr2R_18575001	RAL-716
422	chr2R	18590865	18590900	chr2R	18600017	18600051	roo	9	9152	3.5	2.5	3.0	2.2	9186	chr2R	18590865	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600051	intron	GEFmeso -	chr2R_9_18595001	chr2R_18595001	RAL-716
431	chr2R	19957434	19957463	chr2R	19962634	19962665	copia	7	5199	2.5	2.5	2.5	2.0	5231	chr2R	19957434	intergenic	CG44623 +	chr2R	19960050	intergenic	not near genes	chr2R	19962665	intergenic	not near genes	chr2R_7_19960001	chr2R_19960001	RAL-716
434	chr2R	20739441	20739479	chr2R	20744209	20744247	F-element	8	4763	1.5	1.5	1.5	3.2	4806	chr2R	20739441	intron	dpr +	chr2R	20741844	intron	dpr +	chr2R	20744247	intron	dpr +	chr2R_8_20740001	chr2R_20740001	RAL-716
435	chr2R	20783316	20783329	chr2R	20788088	20788088	F-element	4	4768	1.0	2.0	1.5	1.6	4772	chr2R	20783316	intergenic	not near genes	chr2R	20785702	intergenic	not near genes	chr2R	20788088	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-716
447	chr2R	21738287	21738310	chr2R	21747437	21747449	roo	5	9149	0.5	3.5	2.0	1.7	9162	chr2R	21738287	intergenic	not near genes	chr2R	21742868	intergenic	not near genes	chr2R	21747449	intergenic	not near genes	chr2R_5_21740001	chr2R_21740001	RAL-716
448	chr2R	21753106	21753111	chr2R	21753591	21753596	roo	4	485	1.5	5.0	3.2	1.0	490	chr2R	21753106	intergenic	not near genes	chr2R	21753351	intergenic	not near genes	chr2R	21753596	intergenic	not near genes	chr2R_4_21750001	chr2R_21750001	RAL-716
454	chr2R	21809525	21809554	chr2R	21817765	21817794	roo	5	8238	1.5	1.0	1.2	2.3	8269	chr2R	21809525	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817794	intergenic	not near genes	chr2R_5_21810001	chr2R_21810001	RAL-716
461	chr2R	22349692	22349707	chr2R	22351476	22351488	jockey	5	1783	4.0	5.5	4.8	0.9	1796	chr2R	22349692	intron	Liprin-gamma -	chr2R	22350590	intron	Liprin-gamma -	chr2R	22351488	intron	Liprin-gamma -	chr2R_5_22350001	chr2R_22350001	RAL-716
462	chr2R	22349709	22349726	chr2R	22351472	22351510	jockey	7	1777	1.0	5.0	3.0	1.8	1801	chr2R	22349709	intron	Liprin-gamma -	chr2R	22350610	intron	Liprin-gamma -	chr2R	22351510	intron	Liprin-gamma -	chr2R_7_22350001	chr2R_22350001	RAL-716
463	chr2R	22360383	22360406	chr2R	22360811	22360820	jockey	6	423	3.5	1.5	2.5	1.7	437	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360602	intron	Liprin-gamma -	chr2R	22360820	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-716
464	chr2R	22525761	22525778	chr2R	22529315	22529333	jockey	6	3554	1.0	4.5	2.8	1.6	3572	chr2R	22525761	intron	px -	chr2R	22527547	intron	px -	chr2R	22529333	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-716
469	chr2R	22774969	22775000	chr2R	22775388	22775419	jockey	6	418	2.5	1.5	2.0	2.0	450	chr2R	22774969	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775419	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-716
484	chr2R	23914304	23914327	chr2R	23921928	23921941	412	8	7620	2.0	6.5	4.2	1.5	7637	chr2R	23914304	exon	kcc +	chr2R	23918122	intron	kcc +	chr2R	23921941	intron	kcc +	chr2R_8_23915001	chr2R_23915001	RAL-716
485	chr2R	23914328	23914332	chr2R	23921923	23921945	412	4	7609	2.0	5.5	3.8	0.8	7617	chr2R	23914328	exon	kcc +	chr2R	23918136	intron	kcc +	chr2R	23921945	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-716
488	chr2R	24147069	24147095	chr2R	24154644	24154668	412	4	7575	2.0	5.5	3.8	0.8	7599	chr2R	24147069	intron	Dat +	chr2R	24150868	intron	Dat +	chr2R	24154668	intron	Dat +	chr2R_4_24150001	chr2R_24150001	RAL-716
489	chr2R	24177238	24177266	chr2R	24184720	24184751	412	5	7484	0.0	1.5	0.8	2.8	7513	chr2R	24177238	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184751	3` UTR	Nop60B +	chr2R_5_24180001	chr2R_24180001	RAL-716
490	chr2R	24353434	24353454	chr2R	24361796	24361816	roo	6	8362	4.5	3.0	3.8	1.2	8382	chr2R	24353434	intron,intron	bs +,CR44811 -	chr2R	24357625	intron,intron	bs +,CR44811 -	chr2R	24361816	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-716
495	chr2R	24647587	24647608	chr2R	24655144	24655165	412	6	7557	3.5	1.5	2.5	1.7	7578	chr2R	24647587	intergenic	not near genes	chr2R	24651376	intergenic	not near genes	chr2R	24655165	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-716
497	chr2R	24727886	24727918	chr2R	24735392	24735421	mdg1	10	7502	1.5	2.5	2.0	3.3	7535	chr2R	24727886	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735421	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	RAL-716
498	chr2R	24763615	24763643	chr2R	24765590	24765619	G2	8	1976	4.0	6.5	5.2	1.3	2004	chr2R	24763615	exon	CG3894 +	chr2R	24764617	intron	CG3894 +	chr2R	24765619	exon	CG3894 +	chr2R_8_24760001	chr2R_24760001	RAL-716
507	chr3L	110221	110239	chr3L	119387	119406	roo	8	9166	1.5	3.0	2.2	2.5	9185	chr3L	110221	intergenic	not near genes	chr3L	114814	intergenic	not near genes	chr3L	119406	intergenic	not near genes	chr3L_8_110001	chr3L_110001	RAL-716
509	chr3L	402697	402708	chr3L	409748	409761	297	6	7051	6.5	2.5	4.5	1.1	7064	chr3L	402697	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409761	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-716
514	chr3L	858003	858032	chr3L	866481	866481	Tirant	4	8472	2.0	3.0	2.5	1.1	8478	chr3L	858003	intergenic	not near genes	chr3L	862242	intergenic	not near genes	chr3L	866481	intergenic	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-716
515	chr3L	925177	925210	chr3L	932603	932636	mdg1	7	7426	0.5	1.0	0.8	3.9	7459	chr3L	925177	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-716
516	chr3L	939776	939802	chr3L	940892	940920	jockey	9	1119	3.5	2.0	2.8	2.4	1144	chr3L	939776	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940920	intron	Glut1 +	chr3L_9_940001	chr3L_940001	RAL-716
518	chr3L	1219599	1219615	chr3L	1227332	1227348	412	6	7733	4.0	7.0	5.5	0.9	7749	chr3L	1219599	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227348	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-716
525	chr3L	1506005	1506027	chr3L	1513602	1513624	17.6	11	7596	5.0	4.0	4.5	2.0	7619	chr3L	1506005	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513624	intron,intron	Psa +,cue -	chr3L_11_1505001	chr3L_1505001	RAL-716
540	chr3L	2447503	2447537	chr3L	2456659	2456693	roo	7	9144	2.0	3.5	2.8	1.8	9190	chr3L	2447503	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456693	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-716
550	chr3L	3281435	3281472	chr3L	3281931	3281968	Doc	5	494	3.0	4.5	3.8	1.0	533	chr3L	3281435	intron	CG12017 +	chr3L	3281702	intron	CG12017 +	chr3L	3281968	intron	CG12017 +	chr3L_5_3280001	chr3L_3280001	RAL-716
551	chr3L	3475078	3475113	chr3L	3475518	3475557	jockey	10	443	0.5	3.0	1.8	3.6	479	chr3L	3475078	intron	CG42324 +	chr3L	3475318	intron	CG42324 +	chr3L	3475557	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	RAL-716
553	chr3L	3601317	3601326	chr3L	3606607	3606614	copia	6	5304	4.0	2.0	3.0	1.5	5297	chr3L	3601317	intron	Eip63E +	chr3L	3603966	intron	Eip63E +	chr3L	3606614	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-716
561	chr3L	4901137	4901157	chr3L	4907325	4907347	diver	4	6190	1.0	3.0	2.0	1.3	6210	chr3L	4901137	intergenic	CG13704 +	chr3L	4904242	intergenic	not near genes	chr3L	4907347	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-716
562	chr3L	5034160	5034185	chr3L	5043311	5043336	roo	5	9151	1.5	1.0	1.2	2.3	9176	chr3L	5034160	intron	Con -	chr3L	5038748	intron	Con -	chr3L	5043336	intron	Con -	chr3L_5_5035001	chr3L_5035001	RAL-716
568	chr3L	5926324	5926349	chr3L	5926504	5926539	BS	8	180	0.5	0.0	0.2	6.7	215	chr3L	5926324	intron	Vap-33B +	chr3L	5926432	intron	Vap-33B +	chr3L	5926539	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	RAL-716
569	chr3L	6001679	6001712	chr3L	6004379	6004412	jockey	7	2700	0.5	0.0	0.2	5.8	2733	chr3L	6001679	intron	PVRAP +	chr3L	6003046	intron	PVRAP +	chr3L	6004412	intron	PVRAP +	chr3L_7_6000001	chr3L_6000001	RAL-716
573	chr3L	6220916	6220948	chr3L	6230067	6230099	roo	8	9152	1.5	2.0	1.8	2.9	9183	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225508	intergenic	not near genes	chr3L	6230099	intergenic	not near genes	chr3L_8_6225001	chr3L_6225001	RAL-716
580	chr3L	6887518	6887548	chr3L	6895010	6895040	roo	10	7491	1.5	1.0	1.2	4.5	7522	chr3L	6887518	intergenic	not near genes	chr3L	6891279	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_10_6890001	chr3L_6890001	RAL-716
588	chr3L	7886526	7886541	chr3L	7889044	7889059	Stalker4	5	2518	1.0	0.5	0.8	2.8	2533	chr3L	7886526	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889059	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-716
598	chr3L	9076928	9076959	chr3L	9084488	9084518	412	14	7559	4.5	2.0	3.2	3.3	7590	chr3L	9076928	exon	Tequila +	chr3L	9080723	intron	Tequila +	chr3L	9084518	exon	Tequila +	chr3L_14_9080001	chr3L_9080001	RAL-716
600	chr3L	9130557	9130582	chr3L	9134317	9134343	412	12	3760	5.0	4.0	4.5	2.2	3786	chr3L	9130557	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_12_9130001	chr3L_9130001	RAL-716
601	chr3L	9164707	9164730	chr3L	9166174	9166197	hobo	4	1467	0.5	0.0	0.2	3.3	1490	chr3L	9164707	intron	Rdl -	chr3L	9165452	intron	Rdl -	chr3L	9166197	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	RAL-716
604	chr3L	9219248	9219277	chr3L	9219912	9219944	jockey	13	668	4.5	1.0	2.8	3.4	696	chr3L	9219248	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219944	intergenic	not near genes	chr3L_13_9215001	chr3L_9215001	RAL-716
608	chr3L	9501699	9501731	chr3L	9502184	9502216	roo	7	485	1.5	2.0	1.8	2.5	517	chr3L	9501699	intron	path -	chr3L	9501958	intron	path -	chr3L	9502216	intron	path -	chr3L_7_9500001	chr3L_9500001	RAL-716
611	chr3L	9533758	9533783	chr3L	9541318	9541342	412	5	7557	3.0	5.5	4.2	1.0	7584	chr3L	9533758	intergenic	not near genes	chr3L	9537550	intergenic	not near genes	chr3L	9541342	intergenic	not near genes	chr3L_5_9535001	chr3L_9535001	RAL-716
615	chr3L	9929675	9929700	chr3L	9938456	9938477	roo	7	8780	1.5	3.5	2.5	2.0	8802	chr3L	9929675	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938477	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-716
618	chr3L	10414954	10414969	chr3L	10417326	10417341	Doc	4	2372	0.5	2.5	1.5	1.6	2387	chr3L	10414954	intergenic	CG12362 +	chr3L	10416148	intergenic	not near genes	chr3L	10417341	intergenic	not near genes	chr3L_4_10415001	chr3L_10415001	RAL-716
627	chr3L	11087063	11087087	chr3L	11088849	11088876	S-element	5	1786	0.5	3.5	2.0	1.7	1813	chr3L	11087063	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088876	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-716
629	chr3L	11264464	11264493	chr3L	11271416	11271445	17.6	5	6952	1.0	2.0	1.5	2.0	6981	chr3L	11264464	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271445	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-716
630	chr3L	11564792	11564812	chr3L	11572417	11572424	412	5	7622	2.0	6.5	4.2	1.0	7632	chr3L	11564792	exon	CG33267 +	chr3L	11568608	intron	CG33267 +	chr3L	11572424	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	RAL-716
635	chr3L	11864559	11864582	chr3L	11865853	11865875	pogo	5	1294	2.0	3.0	2.5	1.4	1316	chr3L	11864559	intron	CG44837 -	chr3L	11865217	intron	CG44837 -	chr3L	11865875	intron	CG44837 -	chr3L_5_11865001	chr3L_11865001	RAL-716
647	chr3L	12874924	12874959	chr3L	12877216	12877251	jockey	5	2291	1.0	0.0	0.5	3.3	2327	chr3L	12874924	intergenic	not near genes	chr3L	12876088	intergenic	not near genes	chr3L	12877251	intergenic	not near genes	chr3L_5_12875001	chr3L_12875001	RAL-716
649	chr3L	12919278	12919298	chr3L	12924762	12924765	Rt1c	4	5478	3.5	0.5	2.0	1.3	5487	chr3L	12919278	intergenic	not near genes	chr3L	12922022	intergenic	not near genes	chr3L	12924765	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-716
656	chr3L	13525162	13525185	chr3L	13532958	13532959	roo	7	7793	2.5	2.5	2.5	2.0	7797	chr3L	13525162	intergenic	not near genes	chr3L	13529060	intergenic	not near genes	chr3L	13532959	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	RAL-716
659	chr3L	13804545	13804576	chr3L	13822831	13822855	roo	4	18284	1.0	1.0	1.0	2.0	18310	chr3L	13804545	intergenic	not near genes	chr3L	13813700	intergenic	not near genes	chr3L	13822855	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-716
662	chr3L	14267372	14267399	chr3L	14271811	14271839	F-element	5	4436	0.5	1.0	0.8	2.8	4467	chr3L	14267372	intergenic	not near genes	chr3L	14269606	intergenic	not near genes	chr3L	14271839	intergenic	not near genes	chr3L_5_14265001	chr3L_14265001	RAL-716
664	chr3L	14295998	14296009	chr3L	14296471	14296495	roo	4	481	2.5	1.5	2.0	1.3	497	chr3L	14295998	intron	fz +	chr3L	14296246	intron	fz +	chr3L	14296495	intron	fz +	chr3L_4_14295001	chr3L_14295001	RAL-716
667	chr3L	14468446	14468464	chr3L	14473652	14473670	copia	5	5206	3.0	0.5	1.8	1.8	5224	chr3L	14468446	intron	bbg -	chr3L	14471058	intron	bbg -	chr3L	14473670	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-716
669	chr3L	14721189	14721209	chr3L	14723029	14723052	Rt1c	7	1839	4.5	4.0	4.2	1.3	1863	chr3L	14721189	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723052	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-716
679	chr3L	15899233	15899261	chr3L	15899794	15899797	jockey	4	544	3.5	5.0	4.2	0.8	564	chr3L	15899233	intergenic	pHCl -	chr3L	15899515	intergenic	pHCl -	chr3L	15899797	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-716
681	chr3L	16184104	16184139	chr3L	16188923	16188958	X-element	4	4817	1.5	3.0	2.2	1.2	4854	chr3L	16184104	intergenic	not near genes	chr3L	16186531	intergenic	not near genes	chr3L	16188958	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-716
684	chr3L	16493990	16494013	chr3L	16494507	16494530	jockey	4	517	2.0	4.0	3.0	1.0	540	chr3L	16493990	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494260	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_4_16490001	chr3L_16490001	RAL-716
691	chr3L	16945725	16945761	chr3L	16954878	16954913	roo	11	9149	3.5	0.5	2.0	3.7	9188	chr3L	16945725	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954913	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-716
698	chr3L	17516982	17517006	chr3L	17524540	17524564	412	5	7556	2.0	3.5	2.8	1.3	7582	chr3L	17516982	intron	CG7564 +	chr3L	17520773	intron	CG7564 +	chr3L	17524564	3` UTR	CG7564 +	chr3L_5_17520001	chr3L_17520001	RAL-716
712	chr3L	18528627	18528650	chr3L	18537788	18537811	roo	5	9161	1.5	0.0	0.8	2.8	9184	chr3L	18528627	intergenic	not near genes	chr3L	18533219	intergenic	not near genes	chr3L	18537811	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-716
716	chr3L	18772407	18772441	chr3L	18781088	18781122	roo	10	8681	1.0	4.0	2.5	2.9	8715	chr3L	18772407	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_10_18775001	chr3L_18775001	RAL-716
721	chr3L	19117058	19117075	chr3L	19124495	19124522	mdg1	11	7445	3.5	2.5	3.0	2.8	7464	chr3L	19117058	intron	CG14082 -	chr3L	19120790	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_11_19120001	chr3L_19120001	RAL-716
723	chr3L	19208058	19208090	chr3L	19209431	19209464	Doc	10	1373	2.0	4.0	3.0	2.5	1406	chr3L	19208058	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209464	intron	fz2 -	chr3L_10_19205001	chr3L_19205001	RAL-716
729	chr3L	19848504	19848517	chr3L	19857694	19857706	roo	6	9188	3.0	3.0	3.0	1.5	9202	chr3L	19848504	intron	Papss +	chr3L	19853105	intron	Papss +	chr3L	19857706	intron	Papss +	chr3L_6_19850001	chr3L_19850001	RAL-716
735	chr3L	20476753	20476781	chr3L	20484352	20484379	springer	4	7598	2.0	0.5	1.2	1.8	7626	chr3L	20476753	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484379	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	RAL-716
736	chr3L	20590065	20590077	chr3L	20590604	20590616	412	4	539	3.5	2.0	2.8	1.1	551	chr3L	20590065	intergenic	not near genes	chr3L	20590340	intergenic	not near genes	chr3L	20590616	intergenic	not near genes	chr3L_4_20590001	chr3L_20590001	RAL-716
740	chr3L	20821295	20821309	chr3L	20824763	20824778	NOF	5	3468	3.0	3.0	3.0	1.2	3483	chr3L	20821295	intron	Pka-R1 +	chr3L	20823036	intron	Pka-R1 +	chr3L	20824778	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	RAL-716
744	chr3L	21014915	21014948	chr3L	21023394	21023420	Tirant	10	8474	4.0	3.5	3.8	2.1	8505	chr3L	21014915	intron	skd -	chr3L	21019168	intron	skd -	chr3L	21023420	intron	skd -	chr3L_10_21015001	chr3L_21015001	RAL-716
748	chr3L	21243750	21243763	chr3L	21251310	21251324	412	4	7561	1.5	4.5	3.0	1.0	7574	chr3L	21243750	intron	Eip78C +	chr3L	21247537	intron	Eip78C +	chr3L	21251324	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-716
751	chr3L	21498840	21498856	chr3L	21500475	21500487	1360	4	1634	7.5	3.5	5.5	0.6	1647	chr3L	21498840	intron	Glg1 -	chr3L	21499664	intron	Glg1 -	chr3L	21500487	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	RAL-716
752	chr3L	21749317	21749336	chr3L	21754476	21754495	Doc	6	5160	6.5	4.5	5.5	0.9	5178	chr3L	21749317	intron	Syn1 -	chr3L	21751906	intron	Syn1 -	chr3L	21754495	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-716
757	chr3L	21952458	21952479	chr3L	21953201	21953222	transib1	5	743	1.0	2.0	1.5	2.0	764	chr3L	21952458	intergenic	not near genes	chr3L	21952840	intergenic	not near genes	chr3L	21953222	intergenic	not near genes	chr3L_5_21950001	chr3L_21950001	RAL-716
760	chr3L	22099685	22099699	chr3L	22105871	22105885	3S18	4	6186	2.0	1.5	1.8	1.4	6200	chr3L	22099685	intergenic	not near genes	chr3L	22102785	intergenic	not near genes	chr3L	22105885	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-716
764	chr3L	22577629	22577631	chr3L	22582407	22582414	Doc	5	4785	2.0	3.0	2.5	1.4	4785	chr3L	22577629	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582414	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-716
765	chr3L	22577640	22577651	chr3L	22582401	22582439	Doc	4	4780	1.5	3.0	2.2	1.2	4799	chr3L	22577640	intergenic	not near genes	chr3L	22580040	intergenic	not near genes	chr3L	22582439	3` UTR	CG14459 -	chr3L_4_22580001	chr3L_22580001	RAL-716
766	chr3L	22617193	22617217	chr3L	22624644	22624668	blood	8	7451	2.0	2.0	2.0	2.7	7475	chr3L	22617193	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624668	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	RAL-716
770	chr3L	23042229	23042254	chr3L	23048978	23049005	gypsy6	7	6750	2.5	3.0	2.8	1.8	6776	chr3L	23042229	intergenic	not near genes	chr3L	23045617	intergenic	not near genes	chr3L	23049005	intergenic	not near genes	chr3L_7_23045001	chr3L_23045001	RAL-716
774	chr3L	24168802	24168820	chr3L	24176118	24176148	ZAM	4	7320	3.5	2.5	3.0	1.0	7346	chr3L	24168802	intron	Snap25 +	chr3L	24172475	intron	Snap25 +	chr3L	24176148	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-716
777	chr3R	4105043	4105068	chr3R	4110247	4110271	copia	5	5204	1.0	1.5	1.2	2.3	5228	chr3R	4105043	intergenic	not near genes	chr3R	4107657	intergenic	not near genes	chr3R	4110271	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	RAL-716
779	chr3R	4609553	4609580	chr3R	4610717	4610744	1360	9	1163	2.5	0.5	1.5	3.6	1191	chr3R	4609553	intergenic	not near genes	chr3R	4610148	intergenic	not near genes	chr3R	4610744	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-716
780	chr3R	4683181	4683208	chr3R	4684940	4684967	S-element	7	1759	2.5	3.0	2.8	1.8	1786	chr3R	4683181	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684967	intron	CG43427 +	chr3R_7_4680001	chr3R_4680001	RAL-716
781	chr3R	4753243	4753269	chr3R	4757546	4757571	F-element	8	4302	3.0	5.0	4.0	1.6	4328	chr3R	4753243	intron,intron	atms +,CG44098 -	chr3R	4755407	intron,intron	atms +,CG44098 -	chr3R	4757571	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-716
783	chr3R	4887478	4887507	chr3R	4894854	4894882	rover	4	7376	3.0	2.0	2.5	1.1	7404	chr3R	4887478	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894882	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-716
786	chr3R	5045852	5045874	chr3R	5052953	5052976	HMS-Beagle	6	7102	3.0	0.5	1.8	2.1	7124	chr3R	5045852	intron	CR43635 -	chr3R	5049414	intergenic	not near genes	chr3R	5052976	intergenic	CR45588 -	chr3R_6_5045001	chr3R_5045001	RAL-716
787	chr3R	5067983	5068013	chr3R	5073499	5073530	mdg3	5	5517	3.5	1.5	2.5	1.4	5547	chr3R	5067983	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073530	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-716
790	chr3R	5338399	5338425	chr3R	5343571	5343602	Rt1c	4	5170	3.0	3.5	3.2	1.0	5203	chr3R	5338399	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343602	intron	mtd -	chr3R_4_5340001	chr3R_5340001	RAL-716
792	chr3R	5445970	5445986	chr3R	5452430	5452445	Burdock	4	6460	0.5	2.0	1.2	1.8	6475	chr3R	5445970	intron	CG14669 +	chr3R	5449208	intron	CG14669 +	chr3R	5452445	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-716
794	chr3R	5746016	5746046	chr3R	5746256	5746287	pogo	6	240	2.0	5.5	3.8	1.2	271	chr3R	5746016	3` UTR	Madm +	chr3R	5746152	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-716
796	chr3R	5822382	5822404	chr3R	5823549	5823571	1360	8	1167	1.5	4.0	2.8	2.1	1189	chr3R	5822382	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	RAL-716
799	chr3R	5927569	5927588	chr3R	5927809	5927828	pogo	11	238	1.5	2.5	2.0	3.7	259	chr3R	5927569	intron	CG34113 -	chr3R	5927698	intron	CG34113 -	chr3R	5927828	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-716
802	chr3R	6015981	6015995	chr3R	6024447	6024476	Tirant	6	8476	1.0	2.5	1.8	2.1	8495	chr3R	6015981	intergenic	not near genes	chr3R	6020228	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	RAL-716
803	chr3R	6175186	6175206	chr3R	6182446	6182463	HMS-Beagle2	6	7265	2.5	1.0	1.8	2.1	7277	chr3R	6175186	intergenic	Osi1 +	chr3R	6178824	intron	CR45194 +	chr3R	6182463	intergenic	CR45194 +	chr3R_6_6175001	chr3R_6175001	RAL-716
811	chr3R	6737497	6737529	chr3R	6739284	6739315	Doc	7	1787	0.0	1.5	0.8	3.9	1818	chr3R	6737497	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739315	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-716
830	chr3R	8094409	8094439	chr3R	8099714	8099744	Transpac	7	5305	1.5	2.0	1.8	2.5	5335	chr3R	8094409	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099744	intron	CG7900 +	chr3R_7_8095001	chr3R_8095001	RAL-716
835	chr3R	8403009	8403041	chr3R	8412175	8412207	roo	13	9162	3.0	1.5	2.2	4.1	9198	chr3R	8403009	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_13_8405001	chr3R_8405001	RAL-716
840	chr3R	8570483	8570511	chr3R	8575118	8575147	HMS-Beagle	8	4636	3.0	3.0	3.0	2.0	4664	chr3R	8570483	intergenic	not near genes	chr3R	8572815	intergenic	not near genes	chr3R	8575147	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	RAL-716
841	chr3R	8601773	8601800	chr3R	8610924	8610953	roo	6	9149	3.0	1.5	2.2	1.9	9180	chr3R	8601773	intron	5-HT2B +	chr3R	8606363	intron	5-HT2B +	chr3R	8610953	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	RAL-716
845	chr3R	8707356	8707388	chr3R	8709797	8709818	jockey	12	2437	4.5	3.0	3.8	2.5	2462	chr3R	8707356	intergenic	not near genes	chr3R	8708587	intergenic	not near genes	chr3R	8709818	intergenic	not near genes	chr3R_12_8705001	chr3R_8705001	RAL-716
850	chr3R	9278782	9278806	chr3R	9284040	9284066	Rt1a	6	5260	1.5	3.0	2.2	1.9	5284	chr3R	9278782	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284066	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-716
851	chr3R	9319582	9319609	chr3R	9320017	9320044	jockey	6	435	1.0	4.0	2.5	1.7	462	chr3R	9319582	intron	CG8861 -	chr3R	9319813	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-716
866	chr3R	11379237	11379253	chr3R	11388392	11388396	roo	4	9152	1.5	1.0	1.2	1.8	9159	chr3R	11379237	intron	pros +	chr3R	11383816	intron	pros +	chr3R	11388396	intron	pros +	chr3R_4_11380001	chr3R_11380001	RAL-716
883	chr3R	12920154	12920182	chr3R	12925357	12925385	copia	8	5201	2.5	1.5	2.0	2.7	5231	chr3R	12920154	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925385	intron	beat-Vb +	chr3R_8_12920001	chr3R_12920001	RAL-716
886	chr3R	13143044	13143061	chr3R	13148620	13148624	mdg3	4	5570	4.0	3.5	3.8	0.8	5580	chr3R	13143044	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145834	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148624	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13145001	chr3R_13145001	RAL-716
898	chr3R	14021649	14021671	chr3R	14023466	14023488	S-element	4	1817	3.0	2.5	2.8	1.1	1839	chr3R	14021649	intron	rdx -	chr3R	14022568	intron	rdx -	chr3R	14023488	intron	rdx -	chr3R_4_14020001	chr3R_14020001	RAL-716
902	chr3R	14194429	14194460	chr3R	14203576	14203608	roo	5	9148	5.0	0.0	2.5	1.4	9179	chr3R	14194429	intron	Dop1R1 -	chr3R	14199018	intron	Dop1R1 -	chr3R	14203608	intron	Dop1R1 -	chr3R_5_14195001	chr3R_14195001	RAL-716
908	chr3R	15059274	15059479	chr3R	15059468	15059566	BS	4	114	0.0	0.0	0.0	4.0	292	chr3R	15059274	intron	dpr9 -	chr3R	15059420	intron	dpr9 -	chr3R	15059566	intron	dpr9 -	chr3R_4_15055001	chr3R_15055001	RAL-716
909	chr3R	15132059	15132081	chr3R	15135119	15135137	Juan	8	3059	3.0	3.5	3.2	1.9	3078	chr3R	15132059	intergenic	CG42788 -	chr3R	15133598	intergenic	not near genes	chr3R	15135137	3` UTR	CG6912 -	chr3R_8_15130001	chr3R_15130001	RAL-716
912	chr3R	15601166	15601196	chr3R	15608688	15608718	412	11	7521	0.5	2.0	1.2	5.0	7552	chr3R	15601166	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_11_15600001	chr3R_15600001	RAL-716
913	chr3R	15618742	15618763	chr3R	15626207	15626237	blood	7	7472	0.5	3.0	1.8	2.5	7495	chr3R	15618742	intergenic	not near genes	chr3R	15622490	intergenic	not near genes	chr3R	15626237	intergenic	not near genes	chr3R_7_15620001	chr3R_15620001	RAL-716
919	chr3R	16756321	16756352	chr3R	16762510	16762543	diver	8	6186	2.0	1.5	1.8	2.9	6222	chr3R	16756321	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762543	intron	bxd -	chr3R_8_16755001	chr3R_16755001	RAL-716
920	chr3R	17294670	17294686	chr3R	17295098	17295114	BS	4	428	1.5	0.0	0.8	2.2	444	chr3R	17294670	intergenic	not near genes	chr3R	17294892	intergenic	not near genes	chr3R	17295114	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-716
921	chr3R	17346706	17346716	chr3R	17348267	17348279	F-element	4	1562	1.5	2.5	2.0	1.3	1573	chr3R	17346706	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348279	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-716
926	chr3R	17925852	17925872	chr3R	17927319	17927338	hobo	5	1467	4.0	4.0	4.0	1.0	1486	chr3R	17925852	intron	cpo +	chr3R	17926595	intron	cpo +	chr3R	17927338	intron	cpo +	chr3R_5_17925001	chr3R_17925001	RAL-716
927	chr3R	17925876	17925888	chr3R	17927317	17927355	hobo	5	1462	3.5	3.0	3.2	1.2	1479	chr3R	17925876	intron	cpo +	chr3R	17926616	intron	cpo +	chr3R	17927355	intron	cpo +	chr3R_5_17925001	chr3R_17925001	RAL-716
938	chr3R	19106827	19106846	chr3R	19106915	19106920	1360	4	85	2.0	0.5	1.2	1.8	93	chr3R	19106827	intron	CG6040 +	chr3R	19106874	intron	CG6040 +	chr3R	19106920	intron	CG6040 +	chr3R_4_19105001	chr3R_19105001	RAL-716
950	chr3R	20156707	20156722	chr3R	20165863	20165892	roo	4	9166	1.5	2.0	1.8	1.4	9185	chr3R	20156707	intergenic	not near genes	chr3R	20161300	intergenic	not near genes	chr3R	20165892	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-716
953	chr3R	20266522	20266538	chr3R	20272991	20273009	Burdock	4	6470	4.0	1.0	2.5	1.1	6487	chr3R	20266522	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273009	intron	cic +	chr3R_4_20265001	chr3R_20265001	RAL-716
964	chr3R	21609003	21609026	chr3R	21611636	21611660	NOF	6	2634	4.5	4.0	4.2	1.2	2657	chr3R	21609003	intron	InR -	chr3R	21610332	intron	InR -	chr3R	21611660	intron	InR -	chr3R_6_21610001	chr3R_21610001	RAL-716
965	chr3R	21761121	21761152	chr3R	21768512	21768543	mdg1	5	7390	2.0	5.0	3.5	1.1	7422	chr3R	21761121	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768543	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-716
974	chr3R	22234682	22234712	chr3R	22236001	22236014	pogo	5	1315	2.5	1.0	1.8	1.8	1332	chr3R	22234682	intron	SKIP +	chr3R	22235348	intron	SKIP +	chr3R	22236014	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-716
975	chr3R	22450542	22450574	chr3R	22453182	22453210	NOF	8	2639	3.0	5.5	4.2	1.5	2668	chr3R	22450542	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453210	intron	CG34376 +	chr3R_8_22450001	chr3R_22450001	RAL-716
993	chr3R	24072093	24072115	chr3R	24072530	24072549	jockey	6	437	4.0	4.0	4.0	1.2	456	chr3R	24072093	intron	4EHP -	chr3R	24072321	intron	4EHP -	chr3R	24072549	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-716
994	chr3R	24076914	24076947	chr3R	24078380	24078413	hobo	11	1466	2.0	2.0	2.0	3.7	1499	chr3R	24076914	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078413	intron	4EHP -	chr3R_11_24075001	chr3R_24075001	RAL-716
995	chr3R	24207217	24207247	chr3R	24212292	24212323	flea	5	5074	3.0	2.0	2.5	1.4	5106	chr3R	24207217	intron	twin -	chr3R	24209770	intron	twin -	chr3R	24212323	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-716
998	chr3R	24730104	24730110	chr3R	24732474	24732488	Doc	4	2376	3.0	1.5	2.2	1.2	2384	chr3R	24730104	intron	tok +	chr3R	24731296	intron	tok +	chr3R	24732488	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-716
1006	chr3R	25832698	25832716	chr3R	25841879	25841893	roo	4	9180	4.5	3.0	3.8	0.8	9195	chr3R	25832698	exon	alpha4GT2 +	chr3R	25837296	intron	alpha4GT2 +	chr3R	25841893	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-716
1012	chr3R	26376324	26376358	chr3R	26385483	26385518	roo	5	9159	2.0	0.0	1.0	2.5	9194	chr3R	26376324	intergenic	not near genes	chr3R	26380921	intergenic	not near genes	chr3R	26385518	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-716
1015	chr3R	26558351	26558361	chr3R	26565649	26565671	Stalker4	5	7306	1.5	4.0	2.8	1.3	7320	chr3R	26558351	intron	scrib +	chr3R	26562011	intron	scrib +	chr3R	26565671	intron	scrib +	chr3R_5_26560001	chr3R_26560001	RAL-716
1017	chr3R	26810561	26810584	chr3R	26811043	26811069	roo	5	482	3.0	3.0	3.0	1.2	508	chr3R	26810561	intron	Tl +	chr3R	26810815	intron	Tl +	chr3R	26811069	intron	Tl +	chr3R_5_26810001	chr3R_26810001	RAL-716
1018	chr3R	27007414	27007435	chr3R	27016548	27016570	roo	5	9132	0.0	2.0	1.0	2.5	9156	chr3R	27007414	intron	RYa-R +	chr3R	27011992	intron	RYa-R +	chr3R	27016570	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-716
1022	chr3R	27140519	27140540	chr3R	27148129	27148150	412	6	7609	6.5	4.5	5.5	0.9	7631	chr3R	27140519	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148150	intron	CG6051 -	chr3R_6_27140001	chr3R_27140001	RAL-716
1023	chr3R	27342800	27342825	chr3R	27351380	27351405	Tirant	8	8581	2.0	0.5	1.2	3.6	8605	chr3R	27342800	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-716
1032	chr3R	27725564	27725590	chr3R	27731006	27731032	I-element	5	5442	2.5	1.5	2.0	1.7	5468	chr3R	27725564	intergenic	not near genes	chr3R	27728298	intergenic	not near genes	chr3R	27731032	intergenic	not near genes	chr3R_5_27725001	chr3R_27725001	RAL-716
1036	chr3R	27862960	27862981	chr3R	27868262	27868286	Transpac	5	5304	1.0	0.5	0.8	2.8	5326	chr3R	27862960	intron	CG34353 -	chr3R	27865623	intron	CG34353 -	chr3R	27868286	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-716
1038	chr3R	28068498	28068527	chr3R	28073937	28073964	I-element	8	5441	0.5	3.0	1.8	2.9	5466	chr3R	28068498	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073964	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	RAL-716
1042	chr3R	28173676	28173700	chr3R	28181106	28181130	mdg1	5	7430	1.0	3.0	2.0	1.7	7454	chr3R	28173676	intron	CG34354 +	chr3R	28177403	intron	CG34354 +	chr3R	28181130	intron	CG34354 +	chr3R_5_28175001	chr3R_28175001	RAL-716
1043	chr3R	28253344	28253369	chr3R	28255854	28255876	jockey	7	2508	1.5	5.0	3.2	1.7	2532	chr3R	28253344	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255876	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-716
1051	chr3R	28792877	28792904	chr3R	28797972	28797994	jockey	6	5094	2.5	2.5	2.5	1.7	5117	chr3R	28792877	intergenic	not near genes	chr3R	28795436	intergenic	not near genes	chr3R	28797994	intergenic	not near genes	chr3R_6_28795001	chr3R_28795001	RAL-716
1057	chr3R	29079393	29079405	chr3R	29080764	29080768	NOF	4	1369	3.5	3.0	3.2	1.0	1375	chr3R	29079393	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080768	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-716
1062	chr3R	29406624	29406641	chr3R	29407910	29407926	jockey	7	1284	3.0	4.0	3.5	1.6	1302	chr3R	29406624	intron	Ptp99A +	chr3R	29407275	intron	Ptp99A +	chr3R	29407926	intron	Ptp99A +	chr3R_7_29405001	chr3R_29405001	RAL-716
1069	chr3R	29882023	29882047	chr3R	29891180	29891204	roo	6	9157	3.5	4.0	3.8	1.2	9181	chr3R	29882023	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891204	intron	CG31038 +	chr3R_6_29885001	chr3R_29885001	RAL-716
1070	chr3R	30084857	30084884	chr3R	30086322	30086351	hobo	9	1466	2.0	4.0	3.0	2.2	1494	chr3R	30084857	intron	sima +	chr3R	30085604	intron	sima +	chr3R	30086351	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-716
1072	chr3R	30317328	30317345	chr3R	30324920	30324937	roo	7	7590	1.5	3.5	2.5	2.0	7609	chr3R	30317328	intron	hdc +	chr3R	30321132	intron	hdc +	chr3R	30324937	intron	hdc +	chr3R_7_30320001	chr3R_30320001	RAL-716
1073	chr3R	30396222	30396244	chr3R	30404488	30404510	roo	8	8266	5.5	2.5	4.0	1.6	8288	chr3R	30396222	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404510	5` UTR	CR45570 +	chr3R_8_30400001	chr3R_30400001	RAL-716
1077	chr3R	30480475	30480508	chr3R	30482943	30482976	jockey	7	2468	1.5	3.0	2.2	2.2	2501	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482976	intron	PH4alphaEFB +	chr3R_7_30480001	chr3R_30480001	RAL-716
1078	chr3R	30679520	30679552	chr3R	30686989	30687021	blood	5	7468	1.0	6.0	3.5	1.1	7501	chr3R	30679520	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-716
1080	chr3R	30818810	30818844	chr3R	30820375	30820399	1360	6	1563	0.5	0.5	0.5	4.0	1589	chr3R	30818810	intron	cindr +	chr3R	30819604	intron	cindr +	chr3R	30820399	intron	cindr +	chr3R_6_30815001	chr3R_30815001	RAL-716
1085	chr3R	31279372	31279409	chr3R	31285563	31285574	diver	8	6183	2.5	3.5	3.0	2.0	6202	chr3R	31279372	intergenic	not near genes	chr3R	31282473	intergenic	not near genes	chr3R	31285574	intergenic	not near genes	chr3R_8_31280001	chr3R_31280001	RAL-716
1087	chr3R	31413088	31413120	chr3R	31418288	31418320	copia	7	5200	2.5	2.5	2.5	2.0	5232	chr3R	31413088	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418320	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	RAL-716
1095	chr3R	31691532	31691564	chr3R	31696298	31696314	Doc	7	4762	3.5	4.0	3.8	1.5	4782	chr3R	31691532	intergenic	not near genes	chr3R	31693923	intergenic	not near genes	chr3R	31696314	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-716
1098	chr3R	31998002	31998025	chr3R	32005469	32005494	blood	6	7466	1.5	2.5	2.0	2.0	7492	chr3R	31998002	intron	heph -	chr3R	32001748	intron	heph -	chr3R	32005494	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-716
1100	chr4	671606	671633	chr4	680187	680193	Tirant	5	8578	2.5	2.0	2.2	1.6	8587	chr4	671606	intron	CG11360 +	chr4	675900	intron	CG11360 +	chr4	680193	intron	CG11360 +	chr4_5_675001	chr4_675001	RAL-716
1101	chrX	318477	318499	chrX	323563	323585	flea	4	5085	0.5	1.0	0.8	2.2	5108	chrX	318477	intron,intron	CG3777 +,CG32816 -	chrX	321031	intron,intron	CG3777 +,CG32816 -	chrX	323585	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	RAL-716
1103	chrX	551443	551452	chrX	558988	558995	412	7	7557	2.5	2.5	2.5	2.0	7552	chrX	551443	intron	Appl +	chrX	555219	intron	Appl +	chrX	558995	intron	Appl +	chrX_7_555001	chrX_555001	RAL-716
1106	chrX	827605	827629	chrX	835397	835421	roo	11	7790	2.0	1.5	1.8	3.9	7816	chrX	827605	intron	CG43867 -	chrX	831513	intron	CG43867 -	chrX	835421	intron	CG43867 -	chrX_11_830001	chrX_830001	RAL-716
1107	chrX	906702	906734	chrX	908491	908522	S-element	8	1788	1.0	2.5	1.8	2.9	1820	chrX	906702	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-716
1109	chrX	1518038	1518069	chrX	1523440	1523471	jockey	7	5398	3.0	3.5	3.2	1.7	5433	chrX	1518038	intergenic	inc +	chrX	1520754	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_7_1520001	chrX_1520001	RAL-716
1110	chrX	1627975	1628006	chrX	1635443	1635462	gtwin	10	7466	4.0	2.5	3.2	2.4	7487	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631718	intron,intron	Mur2B -,br +	chrX	1635462	intron,intron	Mur2B -,br +	chrX_10_1630001	chrX_1630001	RAL-716
1118	chrX	3415022	3415048	chrX	3421200	3421231	3S18	4	6183	0.0	0.0	0.0	4.0	6209	chrX	3415022	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421231	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-716
1119	chrX	3493098	3493125	chrX	3502256	3502284	roo	6	9158	2.0	1.0	1.5	2.4	9186	chrX	3493098	intron,intron	CR44999 +,Gas8 -	chrX	3497691	intron,intron	CR44999 +,Gas8 -	chrX	3502284	intron,intron	CR44999 +,Gas8 -	chrX_6_3495001	chrX_3495001	RAL-716
1120	chrX	3597550	3597569	chrX	3619717	3619737	roo	5	22167	2.0	1.5	1.8	1.8	22187	chrX	3597550	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619737	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-716
1123	chrX	3986864	3986888	chrX	3994497	3994521	412	7	7633	1.5	0.0	0.8	3.9	7657	chrX	3986864	intergenic	not near genes	chrX	3990692	intergenic	not near genes	chrX	3994521	intergenic	not near genes	chrX_7_3990001	chrX_3990001	RAL-716
1128	chrX	4763262	4763281	chrX	4763750	4763769	Stalker4	5	487	2.0	3.5	2.8	1.3	507	chrX	4763262	intergenic	not near genes	chrX	4763516	intergenic	not near genes	chrX	4763769	intergenic	not near genes	chrX_5_4760001	chrX_4760001	RAL-716
1129	chrX	4792380	4792405	chrX	4792812	4792838	jockey	6	433	1.0	3.5	2.2	1.9	458	chrX	4792380	intergenic	not near genes	chrX	4792609	intergenic	not near genes	chrX	4792838	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-716
1130	chrX	4827968	4827995	chrX	4835337	4835349	Stalker4	4	7366	3.0	1.0	2.0	1.3	7381	chrX	4827968	intergenic	not near genes	chrX	4831658	intergenic	not near genes	chrX	4835349	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-716
1133	chrX	4990042	4990072	chrX	4997256	4997286	roo	4	7214	0.5	0.5	0.5	2.7	7244	chrX	4990042	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997286	intron	CR44833 -	chrX_4_4990001	chrX_4990001	RAL-716
1137	chrX	5883826	5883835	chrX	5884067	5884073	pogo	4	240	2.5	2.5	2.5	1.1	247	chrX	5883826	intron	CR45668 -	chrX	5883950	intron	CR45668 -	chrX	5884073	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-716
1138	chrX	5884168	5884189	chrX	5884409	5884426	pogo	6	239	0.5	2.0	1.2	2.7	258	chrX	5884168	intron	CR45668 -	chrX	5884297	intron	CR45668 -	chrX	5884426	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RAL-716
1140	chrX	6171593	6171613	chrX	6179025	6179046	Quasimodo	5	7433	1.0	2.5	1.8	1.8	7453	chrX	6171593	intron	Ca-alpha1T -	chrX	6175320	intron	Ca-alpha1T -	chrX	6179046	intron	Ca-alpha1T -	chrX_5_6175001	chrX_6175001	RAL-716
1142	chrX	6335228	6335244	chrX	6337737	6337754	Tirant	6	2507	0.0	4.0	2.0	2.0	2526	chrX	6335228	intergenic	not near genes	chrX	6336491	intergenic	not near genes	chrX	6337754	intergenic	CG3842 +	chrX_6_6335001	chrX_6335001	RAL-716
1143	chrX	6392878	6392889	chrX	6397643	6397654	Doc	6	4765	1.5	3.0	2.2	1.9	4776	chrX	6392878	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397654	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-716
1145	chrX	6562820	6562847	chrX	6571298	6571329	Tirant	9	8480	2.0	2.0	2.0	3.0	8509	chrX	6562820	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571329	intron	CG34417 +	chrX_9_6565001	chrX_6565001	RAL-716
1148	chrX	7023612	7023630	chrX	7031002	7031017	Tabor	6	7388	3.0	1.5	2.2	1.9	7405	chrX	7023612	intron	CG12541 -	chrX	7027314	intron	CG12541 -	chrX	7031017	intron	CG12541 -	chrX_6_7025001	chrX_7025001	RAL-716
1150	chrX	7125251	7125277	chrX	7134410	7134436	roo	6	9158	0.5	2.5	1.5	2.4	9185	chrX	7125251	intergenic	not near genes	chrX	7129844	intergenic	not near genes	chrX	7134436	intergenic	not near genes	chrX_6_7125001	chrX_7125001	RAL-716
1152	chrX	7845723	7845758	chrX	7847214	7847247	hopper2	5	1491	1.5	1.5	1.5	2.0	1524	chrX	7845723	intergenic	not near genes	chrX	7846485	intergenic	not near genes	chrX	7847247	intergenic	not near genes	chrX_5_7845001	chrX_7845001	RAL-716
1157	chrX	9508144	9508168	chrX	9509662	9509678	jockey	5	1516	4.0	1.5	2.8	1.3	1534	chrX	9508144	intron	CG32700 -	chrX	9508911	intron	CG32700 -	chrX	9509678	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-716
1158	chrX	9575799	9575807	chrX	9576120	9576131	mdg3	5	322	2.5	1.5	2.0	1.7	332	chrX	9575799	intron,exon	CG32699 -,CG42395 -	chrX	9575965	intron,intron	CG32699 -,CG42395 -	chrX	9576131	intron,exon	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-716
1159	chrX	9575811	9575821	chrX	9576119	9576145	mdg3	5	318	1.0	1.5	1.2	2.3	334	chrX	9575811	intron,exon	CG32699 -,CG42395 -	chrX	9575978	intron,intron	CG32699 -,CG42395 -	chrX	9576145	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-716
1165	chrX	10550862	10550875	chrX	10552317	10552332	hobo	7	1458	6.5	3.0	4.8	1.2	1470	chrX	10550862	intron	spri -	chrX	10551597	intron	spri -	chrX	10552332	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-716
1166	chrX	10686065	10686082	chrX	10691199	10691219	roo	4	5136	2.0	2.5	2.2	1.2	5154	chrX	10686065	intron	X11Lbeta +	chrX	10688642	intron	X11Lbeta +	chrX	10691219	intron	X11Lbeta +	chrX_4_10685001	chrX_10685001	RAL-716
1170	chrX	11571462	11571482	chrX	11571698	11571714	pogo	4	232	2.5	1.5	2.0	1.3	252	chrX	11571462	3` UTR	Kmn1 -	chrX	11571588	3` UTR	Kmn1 -	chrX	11571714	3` UTR	Kmn1 -	chrX_4_11570001	chrX_11570001	RAL-716
1171	chrX	11633420	11633446	chrX	11640474	11640500	297	4	7054	1.5	2.0	1.8	1.4	7080	chrX	11633420	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640500	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-716
1184	chrX	14105030	14105048	chrX	14114181	14114198	roo	5	9150	1.5	5.0	3.2	1.2	9168	chrX	14105030	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114198	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-716
1190	chrX	14636475	14636496	chrX	14641899	14641928	I-element	6	5430	1.5	2.5	2.0	2.0	5453	chrX	14636475	intron	NetA -	chrX	14639202	intron	NetA -	chrX	14641928	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-716
1192	chrX	14818763	14818792	chrX	14823967	14823996	copia	5	5203	1.5	1.5	1.5	2.0	5233	chrX	14818763	intron	rut -	chrX	14821380	intron	rut -	chrX	14823996	intron	rut -	chrX_5_14820001	chrX_14820001	RAL-716
1193	chrX	14936862	14936887	chrX	14946119	14946144	roo	4	9257	1.5	2.0	1.8	1.4	9282	chrX	14936862	intron	pdgy -	chrX	14941503	intron	pdgy -	chrX	14946144	intron	pdgy -	chrX_4_14940001	chrX_14940001	RAL-716
1194	chrX	15273711	15273723	chrX	15274874	15274875	1360	4	1161	4.0	4.5	4.2	0.8	1164	chrX	15273711	intergenic	not near genes	chrX	15274293	intergenic	not near genes	chrX	15274875	intergenic	not near genes	chrX_4_15270001	chrX_15270001	RAL-716
1195	chrX	15413048	15413087	chrX	15417350	15417389	Juan	8	4300	1.0	0.5	0.8	4.4	4341	chrX	15413048	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417389	intron	Cngl -	chrX_8_15415001	chrX_15415001	RAL-716
1199	chrX	16492648	16492669	chrX	16498224	16498246	mdg3	4	5577	1.0	1.5	1.2	1.8	5598	chrX	16492648	intron	para -	chrX	16495447	intron	para -	chrX	16498246	intron	para -	chrX_4_16495001	chrX_16495001	RAL-716
1208	chrX	17556942	17556965	chrX	17557441	17557449	mdg1	4	490	3.5	1.5	2.5	1.1	507	chrX	17556942	intron	CG43658 -	chrX	17557196	intron	CG43658 -	chrX	17557449	intron	CG43658 -	chrX_4_17555001	chrX_17555001	RAL-716
1210	chrX	17792971	17792980	chrX	17796269	17796273	flea	4	3297	0.0	6.0	3.0	1.0	3302	chrX	17792971	intron	OdsH +	chrX	17794622	intron	OdsH +	chrX	17796273	intron	OdsH +	chrX_4_17790001	chrX_17790001	RAL-716
1211	chrX	18194078	18194105	chrX	18194612	18194640	BS	6	535	1.5	0.5	1.0	3.0	562	chrX	18194078	intron	Frq2 +	chrX	18194359	intron	Frq2 +	chrX	18194640	intron	Frq2 +	chrX_6_18190001	chrX_18190001	RAL-716
1217	chrX	19136554	19136565	chrX	19143474	19143485	412	5	6920	1.5	4.0	2.8	1.3	6931	chrX	19136554	intergenic	not near genes	chrX	19140020	intergenic	not near genes	chrX	19143485	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	RAL-716
1219	chrX	19380176	19380187	chrX	19380413	19380427	pogo	4	240	1.0	1.0	1.0	2.0	251	chrX	19380176	intron	kek5 +	chrX	19380302	intron	kek5 +	chrX	19380427	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-716
1220	chrX	19472128	19472156	chrX	19472698	19472724	jockey	6	569	2.0	3.5	2.8	1.6	596	chrX	19472128	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472724	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-716
1222	chrX	19710076	19710096	chrX	19711860	19711882	S-element	7	1786	2.0	5.0	3.5	1.6	1806	chrX	19710076	intron	meso18E -	chrX	19710979	intron	meso18E -	chrX	19711882	intron	meso18E -	chrX_7_19710001	chrX_19710001	RAL-716
1227	chrX	20377330	20377348	chrX	20378786	20378800	hobo	7	1463	3.0	1.5	2.2	2.2	1470	chrX	20377330	intergenic	not near genes	chrX	20378065	intergenic	not near genes	chrX	20378800	intergenic	not near genes	chrX_7_20375001	chrX_20375001	RAL-716
1231	chrX	20504149	20504157	chrX	20505670	20505678	transib2	4	1520	1.5	7.5	4.5	0.7	1529	chrX	20504149	intron	RhoGAP19D -	chrX	20504914	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-716
1235	chrX	20940719	20940751	chrX	20942188	20942220	hobo	4	1468	3.0	3.0	3.0	1.0	1501	chrX	20940719	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942220	intergenic	not near genes	chrX_4_20940001	chrX_20940001	RAL-716
1237	chrX	21474402	21474419	chrX	21474768	21474785	1731	7	365	5.5	1.0	3.2	1.7	383	chrX	21474402	intergenic	not near genes	chrX	21474594	intergenic	not near genes	chrX	21474785	intergenic	not near genes	chrX_7_21470001	chrX_21470001	RAL-716
1241	chrX	22771518	22771528	chrX	22774809	22774818	297	4	3289	1.5	2.0	1.8	1.4	3300	chrX	22771518	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774818	intron	CR44997 +	chrX_4_22770001	chrX_22770001	RAL-716