SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47489 chr2L 52565 52567 jockey 14 5103 6.5 9.5 8.0 1.6 5107 chr2L 47460 intron Cda5 - chr2L 50014 intron Cda5 - chr2L 52567 intron Cda5 - chr2L_14_50001 chr2L_50001 RAL-714 2 chr2L 45957 45987 chr2L 53391 53421 jockey 6 7434 19.0 15.5 17.2 0.3 7464 chr2L 45957 intron Cda5 - chr2L 49689 intron Cda5 - chr2L 53421 intron Cda5 - chr2L_6_45001 chr2L_45001 RAL-714 3 chr2L 320164 320195 chr2L 320332 320363 6 168 2.5 3.5 3.0 1.5 199 chr2L 320164 intron Plc21C + chr2L 320264 intron Plc21C + chr2L 320363 intron,3` UTR Plc21C +,CG11911 - chr2L_6_320001 chr2L_320001 RAL-714 4 chr2L 325137 325154 chr2L 325214 325220 5 75 7.5 4.0 5.8 0.7 83 chr2L 325137 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325220 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-714 5 chr2L 347886 347908 chr2L 355386 355407 blood 9 7500 2.5 2.5 2.5 2.6 7521 chr2L 347886 3` UTR Plc21C + chr2L 351646 intron Plc21C + chr2L 355407 3` UTR Plc21C + chr2L_9_350001 chr2L_350001 RAL-714 6 chr2L 436875 436906 chr2L 436952 436983 6 77 3.0 2.0 2.5 1.7 108 chr2L 436875 intron ex + chr2L 436929 intron ex + chr2L 436983 intron ex + chr2L_6_435001 chr2L_435001 RAL-714 7 chr2L 438127 438150 chr2L 438228 438251 13 101 1.5 0.5 1.0 6.5 124 chr2L 438127 intron ex + chr2L 438189 intron ex + chr2L 438251 intron ex + chr2L_13_435001 chr2L_435001 RAL-714 8 chr2L 590335 590343 chr2L 590427 590435 4 92 0.5 5.5 3.0 1.0 100 chr2L 590335 intron Gsc - chr2L 590385 intron Gsc - chr2L 590435 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-714 9 chr2L 658281 658314 chr2L 658367 658398 12 85 0.5 0.5 0.5 8.0 117 chr2L 658281 intron ds - chr2L 658340 intron ds - chr2L 658398 intron ds - chr2L_12_655001 chr2L_655001 RAL-714 10 chr2L 686916 686952 chr2L 695956 695992 roo 9 9038 2.5 2.0 2.2 2.8 9076 chr2L 686916 intron ds - chr2L 691454 intron ds - chr2L 695992 intron ds - chr2L_9_690001 chr2L_690001 RAL-714 11 chr2L 764554 764578 chr2L 764654 764678 5 100 2.5 3.5 3.0 1.2 124 chr2L 764554 intergenic not near genes chr2L 764616 intergenic not near genes chr2L 764678 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-714 12 chr2L 770464 770494 chr2L 772245 772258 Bari1 12 1778 2.5 3.5 3.0 3.0 1794 chr2L 770464 intergenic not near genes chr2L 771361 intergenic not near genes chr2L 772258 intergenic CR44614 + chr2L_12_770001 chr2L_770001 RAL-714 13 chr2L 802486 802504 chr2L 802806 802825 6 320 2.5 3.0 2.8 1.6 339 chr2L 802486 intergenic not near genes chr2L 802656 intergenic not near genes chr2L 802825 intergenic not near genes chr2L_6_800001 chr2L_800001 RAL-714 14 chr2L 877842 877860 chr2L 877923 877941 13 81 7.0 2.5 4.8 2.2 99 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_13_875001 chr2L_875001 RAL-714 15 chr2L 936518 936548 chr2L 936594 936624 9 76 4.5 3.5 4.0 1.8 106 chr2L 936518 intron CG4341 + chr2L 936571 intron CG4341 + chr2L 936624 intron CG4341 + chr2L_9_935001 chr2L_935001 RAL-714 16 chr2L 955988 955991 chr2L 956084 956087 4 96 0.0 5.5 2.8 1.1 99 chr2L 955988 intron CG4341 + chr2L 956038 intron CG4341 + chr2L 956087 intron CG4341 + chr2L_4_955001 chr2L_955001 RAL-714 17 chr2L 976878 976901 chr2L 984513 984537 roo 6 7636 1.0 1.5 1.2 2.7 7659 chr2L 976878 intergenic not near genes chr2L 980708 intergenic not near genes chr2L 984537 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-714 18 chr2L 996744 996754 chr2L 1005839 1005848 roo 4 9094 0.0 2.0 1.0 2.0 9104 chr2L 996744 intergenic not near genes chr2L 1001296 intergenic not near genes chr2L 1005848 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-714 19 chr2L 1035557 1035594 chr2L 1035634 1035670 12 77 2.0 1.5 1.8 4.3 113 chr2L 1035557 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_12_1035001 chr2L_1035001 RAL-714 20 chr2L 1094250 1094273 chr2L 1094326 1094349 5 76 2.0 1.0 1.5 2.0 99 chr2L 1094250 intron CG4629 - chr2L 1094300 intron CG4629 - chr2L 1094349 intron CG4629 - chr2L_5_1090001 chr2L_1090001 RAL-714 21 chr2L 1126675 1126706 chr2L 1126751 1126779 17 75 2.5 4.5 3.5 3.8 104 chr2L 1126675 intron Pino - chr2L 1126727 intron Pino - chr2L 1126779 intron Pino - chr2L_17_1125001 chr2L_1125001 RAL-714 22 chr2L 1156862 1156870 chr2L 1156967 1156975 6 104 3.0 1.0 2.0 2.0 113 chr2L 1156862 intron capt - chr2L 1156918 intron capt - chr2L 1156975 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-714 23 chr2L 1220128 1220160 chr2L 1227594 1227626 blood 8 7466 3.0 2.0 2.5 2.3 7498 chr2L 1220128 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-714 24 chr2L 1322037 1322040 chr2L 1322114 1322129 4 85 1.5 0.0 0.8 2.2 92 chr2L 1322037 intergenic not near genes chr2L 1322083 intergenic not near genes chr2L 1322129 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-714 25 chr2L 1406427 1406462 chr2L 1408256 1408291 18 1829 2.5 1.5 2.0 6.0 1864 chr2L 1406427 intron lea - chr2L 1407359 intron lea - chr2L 1408291 intron lea - chr2L_18_1405001 chr2L_1405001 RAL-714 26 chr2L 1508051 1508270 chr2L 1508133 1508357 9 84 0.5 1.5 1.0 4.5 306 chr2L 1508051 intergenic not near genes chr2L 1508204 intergenic not near genes chr2L 1508357 intergenic not near genes chr2L_9_1505001 chr2L_1505001 RAL-714 27 chr2L 1536505 1536524 chr2L 1536637 1536656 5 132 0.0 1.5 0.8 2.8 151 chr2L 1536505 intergenic not near genes chr2L 1536580 intergenic not near genes chr2L 1536656 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-714 28 chr2L 1566754 1566780 chr2L 1567141 1567164 8 386 3.0 2.0 2.5 2.3 410 chr2L 1566754 intron haf + chr2L 1566959 intron haf + chr2L 1567164 intron haf + chr2L_8_1565001 chr2L_1565001 RAL-714 29 chr2L 1570695 1570720 chr2L 1573567 1573591 F-element 10 2871 2.0 5.0 3.5 2.2 2896 chr2L 1570695 intron haf + chr2L 1572143 intron haf + chr2L 1573591 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-714 30 chr2L 1576380 1576412 chr2L 1576528 1576560 13 147 1.5 3.0 2.2 4.1 180 chr2L 1576380 intron haf + chr2L 1576470 intron haf + chr2L 1576560 intron haf + chr2L_13_1575001 chr2L_1575001 RAL-714 31 chr2L 1711355 1711388 chr2L 1711679 1711696 mdg3 7 322 3.0 6.5 4.8 1.2 341 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711526 3` UTR frtz - chr2L 1711696 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-714 32 chr2L 1721823 1721854 chr2L 1721907 1721938 10 82 0.0 3.0 1.5 4.0 115 chr2L 1721823 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721938 intron Rim2 - chr2L_10_1720001 chr2L_1720001 RAL-714 33 chr2L 1759733 1759758 chr2L 1759818 1759842 4 83 2.0 2.5 2.2 1.2 109 chr2L 1759733 intergenic not near genes chr2L 1759788 intergenic not near genes chr2L 1759842 intergenic not near genes chr2L_4_1755001 chr2L_1755001 RAL-714 34 chr2L 1910539 1910569 chr2L 1910628 1910658 9 89 2.5 2.0 2.2 2.8 119 chr2L 1910539 intron CG7337 + chr2L 1910598 intron CG7337 + chr2L 1910658 intron CG7337 + chr2L_9_1910001 chr2L_1910001 RAL-714 35 chr2L 1946735 1946759 chr2L 1946811 1946835 5 76 2.5 1.0 1.8 1.8 100 chr2L 1946735 intergenic CG33673 - chr2L 1946785 intergenic CG33673 - chr2L 1946835 intergenic CG33673 - chr2L_5_1945001 chr2L_1945001 RAL-714 36 chr2L 1984374 1984383 chr2L 1984451 1984456 5 77 4.0 2.0 3.0 1.2 82 chr2L 1984374 exon CG7289 + chr2L 1984415 3` UTR CG7289 + chr2L 1984456 3` UTR CG7289 + chr2L_5_1980001 chr2L_1980001 RAL-714 37 chr2L 2007851 2007869 chr2L 2007959 2007977 4 108 0.5 1.5 1.0 2.0 126 chr2L 2007851 intergenic CR45712 + chr2L 2007914 intergenic CR45712 +,Nplp4 + chr2L 2007977 intergenic CR45712 +,Nplp4 + chr2L_4_2005001 chr2L_2005001 RAL-714 38 chr2L 2100377 2100407 chr2L 2109528 2109558 roo 15 9151 2.0 1.5 1.8 5.4 9181 chr2L 2100377 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_15_2100001 chr2L_2100001 RAL-714 39 chr2L 2112114 2112139 chr2L 2119776 2119798 opus 5 7654 3.5 4.5 4.0 1.0 7684 chr2L 2112114 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119798 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-714 40 chr2L 2202584 2202601 chr2L 2202878 2202894 5 294 1.5 4.5 3.0 1.2 310 chr2L 2202584 intergenic not near genes chr2L 2202739 intergenic not near genes chr2L 2202894 intergenic not near genes chr2L_5_2200001 chr2L_2200001 RAL-714 41 chr2L 2250426 2250445 chr2L 2251192 2251211 5 766 3.5 0.0 1.8 1.8 785 chr2L 2250426 intergenic Ser12 - chr2L 2250818 exon Ser12 - chr2L 2251211 exon Ser12 - chr2L_5_2250001 chr2L_2250001 RAL-714 42 chr2L 2290599 2290618 chr2L 2290674 2290694 15 75 2.0 3.0 2.5 4.3 95 chr2L 2290599 exon robl22E - chr2L 2290646 intron robl22E - chr2L 2290694 intron robl22E - chr2L_15_2290001 chr2L_2290001 RAL-714 43 chr2L 2294041 2294075 chr2L 2299246 2299279 copia 9 5200 2.0 2.0 2.0 3.0 5238 chr2L 2294041 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299279 intergenic not near genes chr2L_9_2295001 chr2L_2295001 RAL-714 44 chr2L 2314580 2314592 chr2L 2316639 2316650 4 2059 28.0 16.0 22.0 0.2 2070 chr2L 2314580 intron,intron CG9967 -,eys + chr2L 2315615 intron,intron CG9967 -,eys + chr2L 2316650 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-714 45 chr2L 2431948 2431976 chr2L 2432318 2432347 5 371 1.5 1.0 1.2 2.3 399 chr2L 2431948 intron dpp + chr2L 2432148 intron dpp + chr2L 2432347 intron dpp + chr2L_5_2430001 chr2L_2430001 RAL-714 46 chr2L 2439272 2439276 chr2L 2439348 2439353 5 76 7.0 8.0 7.5 0.6 81 chr2L 2439272 intron dpp + chr2L 2439312 intron dpp + chr2L 2439353 intron dpp + chr2L_5_2435001 chr2L_2435001 RAL-714 47 chr2L 2503535 2503551 chr2L 2503630 2503647 4 96 5.5 5.5 5.5 0.6 112 chr2L 2503535 intergenic not near genes chr2L 2503591 intergenic not near genes chr2L 2503647 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-714 48 chr2L 2503553 2503568 chr2L 2503629 2503664 8 90 2.0 5.0 3.5 1.8 111 chr2L 2503553 intergenic not near genes chr2L 2503608 intergenic not near genes chr2L 2503664 intergenic not near genes chr2L_8_2500001 chr2L_2500001 RAL-714 49 chr2L 2587830 2587846 chr2L 2587909 2587925 7 79 2.5 5.5 4.0 1.4 95 chr2L 2587830 intergenic not near genes chr2L 2587878 intergenic not near genes chr2L 2587925 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-714 50 chr2L 2637836 2637864 chr2L 2638233 2638261 7 397 2.0 3.0 2.5 2.0 425 chr2L 2637836 intergenic not near genes chr2L 2638048 intergenic not near genes chr2L 2638261 intergenic not near genes chr2L_7_2635001 chr2L_2635001 RAL-714 51 chr2L 2667626 2667644 chr2L 2667705 2667721 5 78 7.5 2.5 5.0 0.8 95 chr2L 2667626 intergenic not near genes chr2L 2667674 intergenic not near genes chr2L 2667721 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-714 52 chr2L 2698866 2698894 chr2L 2698953 2698981 5 87 2.0 2.5 2.2 1.6 115 chr2L 2698866 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_5_2695001 chr2L_2695001 RAL-714 53 chr2L 2933303 2933332 chr2L 2935479 2935509 pogo 8 2177 4.5 1.5 3.0 2.0 2206 chr2L 2933303 intron lilli + chr2L 2934406 intron lilli + chr2L 2935509 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-714 54 chr2L 2937418 2937450 chr2L 2937495 2937526 11 77 2.0 2.5 2.2 3.4 108 chr2L 2937418 intron lilli + chr2L 2937472 intron lilli + chr2L 2937526 intron lilli + chr2L_11_2935001 chr2L_2935001 RAL-714 55 chr2L 3073029 3073061 chr2L 3078232 3078264 copia 13 5203 1.5 2.0 1.8 4.6 5235 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078264 intron toc - chr2L_13_3075001 chr2L_3075001 RAL-714 56 chr2L 3108868 3108893 chr2L 3108945 3108970 9 77 3.0 2.5 2.8 2.4 102 chr2L 3108868 intron toc - chr2L 3108919 intron toc - chr2L 3108970 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-714 57 chr2L 3175804 3175830 chr2L 3176008 3176035 6 205 2.0 1.5 1.8 2.1 231 chr2L 3175804 intron CG34393 - chr2L 3175920 intron CG34393 - chr2L 3176035 intron CG34393 - chr2L_6_3175001 chr2L_3175001 RAL-714 58 chr2L 3187217 3187224 chr2L 3187569 3187576 4 352 1.5 1.0 1.2 1.8 359 chr2L 3187217 intron CG34393 - chr2L 3187396 intron CG34393 - chr2L 3187576 intron CG34393 - chr2L_4_3185001 chr2L_3185001 RAL-714 59 chr2L 3192207 3192233 chr2L 3192318 3192341 5 110 1.5 2.5 2.0 1.7 134 chr2L 3192207 exon CG34393 - chr2L 3192274 intron CG34393 - chr2L 3192341 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-714 60 chr2L 3202741 3202761 chr2L 3210170 3210190 mdg1 5 7429 3.5 3.5 3.5 1.1 7449 chr2L 3202741 intergenic not near genes chr2L 3206466 intergenic not near genes chr2L 3210190 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-714 61 chr2L 3291252 3291270 chr2L 3291323 3291350 4 75 1.5 3.5 2.5 1.1 98 chr2L 3291252 3` UTR CG9664 - chr2L 3291301 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-714 62 chr2L 3393550 3393579 chr2L 3393661 3393690 8 111 1.0 1.0 1.0 4.0 140 chr2L 3393550 intergenic not near genes chr2L 3393620 intergenic not near genes chr2L 3393690 intergenic not near genes chr2L_8_3390001 chr2L_3390001 RAL-714 63 chr2L 3482164 3482185 chr2L 3482254 3482275 4 90 1.5 1.5 1.5 1.6 111 chr2L 3482164 intron CG15414 - chr2L 3482220 intron CG15414 - chr2L 3482275 intron CG15414 - chr2L_4_3480001 chr2L_3480001 RAL-714 64 chr2L 3508350 3508374 chr2L 3508428 3508452 7 78 1.0 1.5 1.2 3.2 102 chr2L 3508350 intergenic tim -,CR45299 + chr2L 3508401 intergenic CR45299 +,tim - chr2L 3508452 intergenic CR45299 +,tim - chr2L_7_3505001 chr2L_3505001 RAL-714 65 chr2L 3582885 3582907 chr2L 3582962 3582984 8 76 1.5 1.0 1.2 3.6 99 chr2L 3582885 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582984 intergenic not near genes chr2L_8_3580001 chr2L_3580001 RAL-714 66 chr2L 3632269 3632276 chr2L 3632345 3632353 4 76 0.5 3.5 2.0 1.3 84 chr2L 3632269 intron for - chr2L 3632311 intron for - chr2L 3632353 intron for - chr2L_4_3630001 chr2L_3630001 RAL-714 67 chr2L 3948050 3948078 chr2L 3948136 3948166 5 87 3.0 1.0 2.0 1.7 116 chr2L 3948050 intron fred - chr2L 3948108 intron fred - chr2L 3948166 intron fred - chr2L_5_3945001 chr2L_3945001 RAL-714 68 chr2L 3960565 3960596 chr2L 3960731 3960766 5 169 2.0 0.5 1.2 2.3 201 chr2L 3960565 intron fred - chr2L 3960666 intron fred - chr2L 3960766 intron fred - chr2L_5_3960001 chr2L_3960001 RAL-714 69 chr2L 4037805 4037808 chr2L 4037891 4037893 4 86 1.0 1.5 1.2 1.8 88 chr2L 4037805 intron ed + chr2L 4037849 intron ed + chr2L 4037893 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-714 70 chr2L 4060166 4060198 chr2L 4060242 4060274 5 76 0.0 2.0 1.0 2.5 108 chr2L 4060166 intron ed + chr2L 4060220 intron ed + chr2L 4060274 intron ed + chr2L_5_4060001 chr2L_4060001 RAL-714 71 chr2L 4159411 4159438 chr2L 4159611 4159638 7 199 3.0 0.5 1.8 2.5 227 chr2L 4159411 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159638 intergenic not near genes chr2L_7_4155001 chr2L_4155001 RAL-714 72 chr2L 4210015 4210046 chr2L 4210454 4210485 8 439 4.5 2.5 3.5 1.8 470 chr2L 4210015 intron ft - chr2L 4210250 intron ft - chr2L 4210485 intron ft - chr2L_8_4210001 chr2L_4210001 RAL-714 73 chr2L 4297485 4297509 chr2L 4297559 4297564 4 64 4.0 4.5 4.2 0.8 79 chr2L 4297485 intron tutl + chr2L 4297524 intron tutl + chr2L 4297564 intron tutl + chr2L_4_4295001 chr2L_4295001 RAL-714 74 chr2L 4386119 4386148 chr2L 4386204 4386233 7 85 2.5 1.0 1.8 2.5 114 chr2L 4386119 intergenic CG3338 -,Psf2 - chr2L 4386176 intergenic Psf2 -,CG3338 - chr2L 4386233 3` UTR Psf2 - chr2L_7_4385001 chr2L_4385001 RAL-714 75 chr2L 4601704 4601733 chr2L 4609145 4609174 mdg1 8 7441 0.5 2.0 1.2 3.6 7470 chr2L 4601704 intron dp - chr2L 4605439 intron dp - chr2L 4609174 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-714 76 chr2L 4740428 4740455 chr2L 4740739 4740747 11 308 2.0 2.5 2.2 3.4 319 chr2L 4740428 intron CG15630 - chr2L 4740588 intron CG15630 - chr2L 4740747 intron CG15630 - chr2L_11_4740001 chr2L_4740001 RAL-714 77 chr2L 4751315 4751326 chr2L 4751420 4751432 4 106 1.0 2.5 1.8 1.4 117 chr2L 4751315 intron CG15630 - chr2L 4751374 intron CG15630 - chr2L 4751432 intron CG15630 - chr2L_4_4750001 chr2L_4750001 RAL-714 78 chr2L 4819496 4819518 chr2L 4819619 4819641 6 123 0.5 2.0 1.2 2.7 145 chr2L 4819496 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819641 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-714 79 chr2L 4841070 4841103 chr2L 4841145 4841179 16 74 5.0 4.5 4.8 2.8 109 chr2L 4841070 intron CG12194 + chr2L 4841124 intron CG12194 + chr2L 4841179 exon CG12194 + chr2L_16_4840001 chr2L_4840001 RAL-714 80 chr2L 4855800 4855813 chr2L 4856009 4856022 5 209 4.5 1.0 2.8 1.3 222 chr2L 4855800 intron pog + chr2L 4855911 intron pog + chr2L 4856022 intron pog + chr2L_5_4855001 chr2L_4855001 RAL-714 81 chr2L 4855819 4855830 chr2L 4856008 4856039 4 204 2.5 1.0 1.8 1.4 220 chr2L 4855819 intron pog + chr2L 4855929 intron pog + chr2L 4856039 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-714 82 chr2L 4918165 4918192 chr2L 4923238 4923265 jockey 4 5073 2.5 1.0 1.8 1.4 5100 chr2L 4918165 intron hoe1 - chr2L 4920715 intron hoe1 - chr2L 4923265 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-714 83 chr2L 5000992 5001018 chr2L 5001083 5001109 8 90 3.5 4.0 3.8 1.7 117 chr2L 5000992 intron Rtnl1 - chr2L 5001050 intron Rtnl1 - chr2L 5001109 intron Rtnl1 - chr2L_8_5000001 chr2L_5000001 RAL-714 84 chr2L 5001886 5001908 chr2L 5001964 5001986 4 78 3.5 0.5 2.0 1.3 100 chr2L 5001886 intron Rtnl1 - chr2L 5001936 intron Rtnl1 - chr2L 5001986 intron Rtnl1 - chr2L_4_5000001 chr2L_5000001 RAL-714 85 chr2L 5117302 5117324 chr2L 5117384 5117405 6 82 2.5 1.5 2.0 2.0 103 chr2L 5117302 intron Msp300 + chr2L 5117354 intron Msp300 + chr2L 5117405 intron Msp300 + chr2L_6_5115001 chr2L_5115001 RAL-714 86 chr2L 5147727 5147754 chr2L 5147959 5147986 6 232 0.0 1.5 0.8 3.3 259 chr2L 5147727 intron Msp300 + chr2L 5147856 intron Msp300 + chr2L 5147986 intron Msp300 + chr2L_6_5145001 chr2L_5145001 RAL-714 87 chr2L 5244289 5244304 chr2L 5244381 5244396 6 93 1.5 2.5 2.0 2.0 107 chr2L 5244289 intron tkv - chr2L 5244342 intron tkv - chr2L 5244396 intron tkv - chr2L_6_5240001 chr2L_5240001 RAL-714 88 chr2L 5262532 5262545 chr2L 5262608 5262622 5 76 7.5 6.0 6.8 0.6 90 chr2L 5262532 intron tkv - chr2L 5262577 intron tkv - chr2L 5262622 intron tkv - chr2L_5_5260001 chr2L_5260001 RAL-714 89 chr2L 5265764 5265791 chr2L 5265907 5265933 10 143 10.5 8.5 9.5 1.0 169 chr2L 5265764 intron,exon tkv -,Cyp4ac1 + chr2L 5265848 intron,3` UTR tkv -,Cyp4ac1 + chr2L 5265933 intron tkv - chr2L_10_5265001 chr2L_5265001 RAL-714 90 chr2L 5287423 5287443 chr2L 5287515 5287535 5 91 15.0 14.5 14.8 0.3 112 chr2L 5287423 intergenic CR44743 -,CR44742 + chr2L 5287479 3` UTR CR44743 - chr2L 5287535 3` UTR CR44743 - chr2L_5_5285001 chr2L_5285001 RAL-714 91 chr2L 5296223 5296245 chr2L 5296302 5296324 5 79 9.0 12.0 10.5 0.4 101 chr2L 5296223 intron vri + chr2L 5296274 intron vri + chr2L 5296324 intron vri + chr2L_5_5295001 chr2L_5295001 RAL-714 92 chr2L 5508528 5508563 chr2L 5508604 5508639 4 76 0.0 2.0 1.0 2.0 111 chr2L 5508528 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508639 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-714 93 chr2L 5695870 5695892 chr2L 5695962 5695984 6 91 1.5 2.5 2.0 2.0 114 chr2L 5695870 intergenic not near genes chr2L 5695927 intergenic not near genes chr2L 5695984 intergenic not near genes chr2L_6_5695001 chr2L_5695001 RAL-714 94 chr2L 5720257 5720293 chr2L 5720344 5720375 13 86 0.5 1.0 0.8 7.2 118 chr2L 5720257 intron CG11149 - chr2L 5720316 intron CG11149 - chr2L 5720375 intron CG11149 - chr2L_13_5720001 chr2L_5720001 RAL-714 95 chr2L 5813662 5813695 chr2L 5813767 5813800 9 105 0.5 2.5 1.5 3.6 138 chr2L 5813662 intergenic not near genes chr2L 5813731 intergenic not near genes chr2L 5813800 intergenic not near genes chr2L_9_5810001 chr2L_5810001 RAL-714 96 chr2L 5827712 5827740 chr2L 5836719 5836748 roo 6 9008 1.5 3.0 2.2 1.9 9036 chr2L 5827712 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-714 97 chr2L 5887604 5887627 chr2L 5887684 5887708 11 81 2.5 4.0 3.2 2.6 104 chr2L 5887604 3` UTR CR44577 - chr2L 5887656 3` UTR CR44577 - chr2L 5887708 3` UTR CR44577 - chr2L_11_5885001 chr2L_5885001 RAL-714 98 chr2L 5942029 5942055 chr2L 5942121 5942147 6 91 1.5 5.5 3.5 1.3 118 chr2L 5942029 5` UTR CR45289 + chr2L 5942088 5` UTR CR45289 + chr2L 5942147 5` UTR CR45289 + chr2L_6_5940001 chr2L_5940001 RAL-714 99 chr2L 6007104 6007122 chr2L 6007180 6007198 4 76 1.0 0.0 0.5 2.7 94 chr2L 6007104 intergenic CG9098 -,Gal - chr2L 6007151 intergenic CG9098 -,Gal - chr2L 6007198 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-714 100 chr2L 6160852 6160877 chr2L 6160937 6160960 11 82 2.0 4.5 3.2 2.6 108 chr2L 6160852 exon CG13989 + chr2L 6160906 exon CG13989 + chr2L 6160960 3` UTR CG13989 + chr2L_11_6160001 chr2L_6160001 RAL-714 101 chr2L 6231659 6231677 chr2L 6231740 6231745 4 78 2.0 0.0 1.0 2.0 86 chr2L 6231659 intergenic CR44823 + chr2L 6231702 intergenic CR44823 + chr2L 6231745 intergenic CR44823 + chr2L_4_6230001 chr2L_6230001 RAL-714 102 chr2L 6242986 6242986 chr2L 6243081 6243084 4 97 4.0 4.0 4.0 0.8 98 chr2L 6242986 intergenic not near genes chr2L 6243035 intergenic not near genes chr2L 6243084 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-714 103 chr2L 6308314 6308339 chr2L 6308397 6308422 10 83 3.0 2.0 2.5 2.9 108 chr2L 6308314 intron Ddr + chr2L 6308368 intron Ddr + chr2L 6308422 intron,3` UTR Ddr +,CG43922 - chr2L_10_6305001 chr2L_6305001 RAL-714 104 chr2L 6426855 6426888 chr2L 6445115 6445148 roo 12 18260 2.5 3.5 3.0 3.0 18293 chr2L 6426855 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-714 105 chr2L 6590089 6590119 chr2L 6590167 6590197 4 78 8.5 8.0 8.2 0.4 108 chr2L 6590089 intron CG11319 - chr2L 6590143 intron CG11319 - chr2L 6590197 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-714 106 chr2L 6598120 6598130 chr2L 6599077 6599087 4 957 6.0 5.5 5.8 0.6 967 chr2L 6598120 intron CG11319 - chr2L 6598604 intron CG11319 - chr2L 6599087 intron CG11319 - chr2L_4_6595001 chr2L_6595001 RAL-714 107 chr2L 6626886 6626911 chr2L 6626969 6626996 6 84 5.0 2.0 3.5 1.3 110 chr2L 6626886 intron Oatp26F - chr2L 6626941 intron Oatp26F - chr2L 6626996 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-714 108 chr2L 6728741 6728763 chr2L 6728821 6728847 8 83 4.0 2.0 3.0 2.0 106 chr2L 6728741 exon Liprin-alpha + chr2L 6728794 intron Liprin-alpha + chr2L 6728847 intron Liprin-alpha + chr2L_8_6725001 chr2L_6725001 RAL-714 109 chr2L 6758714 6758747 chr2L 6759086 6759119 8 373 28.0 26.0 27.0 0.3 405 chr2L 6758714 exon CG11322 - chr2L 6758916 exon CG11322 - chr2L 6759119 exon CG11322 - chr2L_8_6755001 chr2L_6755001 RAL-714 110 chr2L 6850388 6850413 chr2L 6850471 6850496 7 83 0.5 1.5 1.0 3.5 108 chr2L 6850388 intergenic not near genes chr2L 6850442 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_7_6850001 chr2L_6850001 RAL-714 111 chr2L 6950159 6950189 chr2L 6950364 6950394 4 205 4.0 4.0 4.0 0.8 235 chr2L 6950159 5` UTR Gas41 - chr2L 6950276 intergenic Gas41 -,SA + chr2L 6950394 intergenic SA +,Gas41 - chr2L_4_6950001 chr2L_6950001 RAL-714 112 chr2L 7126860 7126877 chr2L 7126939 7126956 5 83 1.0 0.0 0.5 3.3 96 chr2L 7126860 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126956 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-714 113 chr2L 7244742 7244754 chr2L 7244867 7244879 4 125 1.0 11.0 6.0 0.6 137 chr2L 7244742 intron Ndae1 - chr2L 7244810 intron Ndae1 - chr2L 7244879 intron Ndae1 - chr2L_4_7240001 chr2L_7240001 RAL-714 114 chr2L 7301297 7301322 chr2L 7301380 7301405 5 82 9.0 9.5 9.2 0.5 108 chr2L 7301297 intergenic not near genes chr2L 7301351 intergenic not near genes chr2L 7301405 intergenic not near genes chr2L_5_7300001 chr2L_7300001 RAL-714 115 chr2L 7343332 7343339 chr2L 7350441 7350451 roo 4 7112 4.0 1.0 2.5 1.1 7119 chr2L 7343332 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350451 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-714 116 chr2L 7351048 7351078 chr2L 7351156 7351186 7 107 4.5 3.0 3.8 1.5 138 chr2L 7351048 intron Wnt6 + chr2L 7351117 intron Wnt6 + chr2L 7351186 exon Wnt6 + chr2L_7_7350001 chr2L_7350001 RAL-714 117 chr2L 7555216 7555224 chr2L 7555293 7555301 4 77 0.0 4.0 2.0 1.3 85 chr2L 7555216 intron RapGAP1 - chr2L 7555258 intron RapGAP1 - chr2L 7555301 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-714 118 chr2L 7579199 7579231 chr2L 7579390 7579422 BS 6 191 1.0 0.0 0.5 4.0 223 chr2L 7579199 intergenic RapGAP1 - chr2L 7579310 intergenic RapGAP1 - chr2L 7579422 intergenic RapGAP1 - chr2L_6_7575001 chr2L_7575001 RAL-714 119 chr2L 7916172 7916197 chr2L 7916433 7916458 6 261 2.0 5.0 3.5 1.3 286 chr2L 7916172 intron Snoo - chr2L 7916315 intron Snoo - chr2L 7916458 intron Snoo - chr2L_6_7915001 chr2L_7915001 RAL-714 120 chr2L 7938088 7938114 chr2L 7938168 7938178 9 76 11.0 12.0 11.5 0.7 90 chr2L 7938088 intron Snoo - chr2L 7938133 intron Snoo - chr2L 7938178 intron Snoo - chr2L_9_7935001 chr2L_7935001 RAL-714 121 chr2L 8018818 8018832 chr2L 8023601 8023615 Doc 5 4783 0.0 2.0 1.0 2.5 4797 chr2L 8018818 intron Tg + chr2L 8021216 intron Tg + chr2L 8023615 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-714 122 chr2L 8044104 8044121 chr2L 8044178 8044200 9 78 3.0 1.0 2.0 3.0 96 chr2L 8044104 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044200 intron CG7466 + chr2L_9_8040001 chr2L_8040001 RAL-714 123 chr2L 8167144 8167168 chr2L 8167235 8167259 5 91 3.0 2.0 2.5 1.4 115 chr2L 8167144 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167259 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-714 124 chr2L 8167714 8167738 chr2L 8167793 8167815 4 78 3.5 4.0 3.8 0.8 101 chr2L 8167714 intron Piezo + chr2L 8167764 intron Piezo + chr2L 8167815 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-714 125 chr2L 8336941 8336966 chr2L 8337020 8337043 6 78 0.0 1.0 0.5 4.0 102 chr2L 8336941 intergenic not near genes chr2L 8336992 intergenic not near genes chr2L 8337043 intergenic not near genes chr2L_6_8335001 chr2L_8335001 RAL-714 126 chr2L 8452423 8452442 chr2L 8461594 8461613 roo 7 9170 4.5 4.0 4.2 1.3 9190 chr2L 8452423 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461613 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-714 127 chr2L 8498226 8498232 chr2L 8498306 8498312 4 80 2.0 3.5 2.8 1.1 86 chr2L 8498226 intron Dh31 - chr2L 8498269 intron Dh31 - chr2L 8498312 intron Dh31 - chr2L_4_8495001 chr2L_8495001 RAL-714 128 chr2L 8723117 8723148 chr2L 8731494 8731525 Tirant 9 8377 2.5 3.0 2.8 2.4 8408 chr2L 8723117 intron raw - chr2L 8727321 intron raw - chr2L 8731525 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-714 129 chr2L 8799800 8799829 chr2L 8799915 8799925 8 110 2.0 1.0 1.5 3.2 125 chr2L 8799800 intergenic not near genes chr2L 8799862 intergenic not near genes chr2L 8799925 intergenic not near genes chr2L_8_8795001 chr2L_8795001 RAL-714 130 chr2L 8818049 8818077 chr2L 8818120 8818154 6 78 5.0 3.5 4.2 1.2 105 chr2L 8818049 intergenic not near genes chr2L 8818102 intergenic not near genes chr2L 8818154 intergenic not near genes chr2L_6_8815001 chr2L_8815001 RAL-714 131 chr2L 8857982 8858013 chr2L 8858060 8858076 6 75 8.5 6.5 7.5 0.7 94 chr2L 8857982 intergenic not near genes chr2L 8858029 intergenic not near genes chr2L 8858076 intergenic not near genes chr2L_6_8855001 chr2L_8855001 RAL-714 132 chr2L 9000284 9000313 chr2L 9007793 9007823 roo 12 7509 4.0 3.5 3.8 2.5 7539 chr2L 9000284 intergenic Try29F + chr2L 9004054 intergenic not near genes chr2L 9007823 intergenic not near genes chr2L_12_9000001 chr2L_9000001 RAL-714 133 chr2L 9023155 9023189 chr2L 9023250 9023286 8 96 8.5 6.5 7.5 0.9 131 chr2L 9023155 intergenic not near genes chr2L 9023220 intergenic not near genes chr2L 9023286 intergenic not near genes chr2L_8_9020001 chr2L_9020001 RAL-714 134 chr2L 9040040 9040061 chr2L 9040127 9040148 4 87 6.0 3.5 4.8 0.7 108 chr2L 9040040 intergenic not near genes chr2L 9040094 intergenic not near genes chr2L 9040148 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-714 135 chr2L 9064185 9064205 chr2L 9064282 9064302 4 97 3.5 4.0 3.8 0.8 117 chr2L 9064185 intron CG31708 - chr2L 9064244 intron CG31708 - chr2L 9064302 intron CG31708 - chr2L_4_9060001 chr2L_9060001 RAL-714 136 chr2L 9084336 9084340 chr2L 16217660 16217660 13 7133322 7.0 16.5 11.8 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-714 137 chr2L 9156684 9156713 chr2L 9156761 9156790 5 77 4.0 7.5 5.8 0.7 106 chr2L 9156684 intron CG32982 + chr2L 9156737 intron CG32982 + chr2L 9156790 intron CG32982 + chr2L_5_9155001 chr2L_9155001 RAL-714 138 chr2L 9259220 9259246 chr2L 9259311 9259339 6 92 8.0 9.0 8.5 0.6 119 chr2L 9259220 intron Ggamma30A + chr2L 9259280 intron Ggamma30A + chr2L 9259339 intron Ggamma30A + chr2L_6_9255001 chr2L_9255001 RAL-714 139 chr2L 9264343 9264378 chr2L 9264443 9264478 6 100 1.5 0.5 1.0 3.0 135 chr2L 9264343 intron Ggamma30A + chr2L 9264410 intron Ggamma30A + chr2L 9264478 intron Ggamma30A + chr2L_6_9260001 chr2L_9260001 RAL-714 140 chr2L 9270739 9270760 chr2L 9270834 9270855 4 95 10.5 8.0 9.2 0.4 116 chr2L 9270739 intron Ggamma30A + chr2L 9270797 intron Ggamma30A + chr2L 9270855 intron Ggamma30A + chr2L_4_9270001 chr2L_9270001 RAL-714 141 chr2L 9297379 9297404 chr2L 9297456 9297481 8 77 3.5 5.5 4.5 1.5 102 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297481 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-714 142 chr2L 9335021 9335036 chr2L 9335100 9335114 4 78 3.0 0.5 1.8 1.4 93 chr2L 9335021 intron Eaat1 + chr2L 9335068 intron Eaat1 + chr2L 9335114 intron Eaat1 + chr2L_4_9335001 chr2L_9335001 RAL-714 143 chr2L 9387250 9387269 chr2L 9387348 9387367 4 98 2.0 0.0 1.0 2.0 117 chr2L 9387250 intron Shawl - chr2L 9387308 intron Shawl - chr2L 9387367 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-714 144 chr2L 9393497 9393531 chr2L 9396464 9396498 jockey 12 2966 1.0 2.0 1.5 4.8 3001 chr2L 9393497 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_12_9390001 chr2L_9390001 RAL-714 145 chr2L 9454986 9455005 chr2L 9455088 9455106 6 102 1.5 2.0 1.8 2.1 120 chr2L 9454986 intron numb + chr2L 9455046 intron numb + chr2L 9455106 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-714 146 chr2L 9456931 9457102 chr2L 9457012 9457165 10 77 11.5 6.5 9.0 1.0 234 chr2L 9456931 intron numb + chr2L 9457048 intron numb + chr2L 9457165 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-714 147 chr2L 9767903 9767933 chr2L 9767982 9768012 7 78 0.0 6.5 3.2 1.7 109 chr2L 9767903 intron,exon ppk18 -,CG4017 + chr2L 9767958 intron,exon ppk18 -,CG4017 + chr2L 9768012 intron,exon ppk18 -,CG4017 + chr2L_7_9765001 chr2L_9765001 RAL-714 148 chr2L 9775980 9776010 chr2L 9776062 9776092 5 82 1.0 0.0 0.5 3.3 112 chr2L 9775980 intergenic not near genes chr2L 9776036 intergenic not near genes chr2L 9776092 intergenic not near genes chr2L_5_9775001 chr2L_9775001 RAL-714 149 chr2L 9973728 9973754 chr2L 9980843 9980873 HMS-Beagle 8 7118 5.5 5.5 5.5 1.2 7145 chr2L 9973728 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-714 150 chr2L 9986351 9986383 chr2L 9986445 9986478 4 91 0.5 3.5 2.0 1.3 127 chr2L 9986351 intron bib + chr2L 9986414 intron bib + chr2L 9986478 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-714 151 chr2L 10045413 10045432 chr2L 10045493 10045512 7 77 3.5 3.5 3.5 1.6 99 chr2L 10045413 intergenic not near genes chr2L 10045462 intergenic not near genes chr2L 10045512 intergenic not near genes chr2L_7_10045001 chr2L_10045001 RAL-714 152 chr2L 10051733 10051744 chr2L 10051818 10051829 11 85 8.5 5.0 6.8 1.4 96 chr2L 10051733 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051829 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 RAL-714 153 chr2L 10156320 10156351 chr2L 10163790 10163821 blood 9 7470 4.5 1.0 2.8 2.4 7501 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163821 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-714 154 chr2L 10447086 10447095 chr2L 10447196 10447205 4 110 0.0 0.0 0.0 4.0 119 chr2L 10447086 intron loh + chr2L 10447146 intron loh + chr2L 10447205 intron loh + chr2L_4_10445001 chr2L_10445001 RAL-714 155 chr2L 10490275 10490309 chr2L 10490357 10490391 14 82 2.5 2.5 2.5 4.0 116 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490333 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490391 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_14_10490001 chr2L_10490001 RAL-714 156 chr2L 10580790 10580820 chr2L 10580871 10580901 7 80 1.5 2.0 1.8 2.5 111 chr2L 10580790 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580901 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-714 157 chr2L 10592851 10592871 chr2L 10600513 10600533 opus 4 7661 1.0 3.0 2.0 1.3 7682 chr2L 10592851 intron Trim9 + chr2L 10596692 intron Trim9 + chr2L 10600533 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-714 158 chr2L 10633350 10633376 chr2L 10633437 10633463 4 87 2.5 3.0 2.8 1.1 113 chr2L 10633350 intron CG7329 - chr2L 10633406 intron CG7329 - chr2L 10633463 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-714 159 chr2L 10711895 10711917 chr2L 10712050 10712072 9 154 3.0 4.0 3.5 2.0 177 chr2L 10711895 intergenic not near genes chr2L 10711984 intergenic not near genes chr2L 10712072 intergenic not near genes chr2L_9_10710001 chr2L_10710001 RAL-714 160 chr2L 10808250 10808271 chr2L 10808337 10808357 7 87 2.5 1.5 2.0 2.3 107 chr2L 10808250 intron Nos - chr2L 10808304 intron Nos - chr2L 10808357 intron Nos - chr2L_7_10805001 chr2L_10805001 RAL-714 161 chr2L 10819056 10819073 chr2L 10819216 10819234 4 161 1.5 4.0 2.8 1.1 178 chr2L 10819056 intron Nos - chr2L 10819145 intron,exon Nos -,CG6508 + chr2L 10819234 intron,exon Nos -,CG6508 + chr2L_4_10815001 chr2L_10815001 RAL-714 162 chr2L 10862847 10862876 chr2L 10864459 10864490 Rt1c 15 1612 3.0 7.0 5.0 2.5 1643 chr2L 10862847 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_15_10860001 chr2L_10860001 RAL-714 163 chr2L 10912986 10912995 chr2L 10913065 10913074 5 79 7.0 3.0 5.0 0.8 88 chr2L 10912986 intergenic not near genes chr2L 10913030 intergenic not near genes chr2L 10913074 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-714 164 chr2L 10919797 10919835 chr2L 10919886 10919924 6 89 1.5 2.0 1.8 2.1 127 chr2L 10919797 intron dpr2 - chr2L 10919860 intron dpr2 - chr2L 10919924 intron dpr2 - chr2L_6_10915001 chr2L_10915001 RAL-714 165 chr2L 10941083 10941104 chr2L 10941379 10941402 6 298 2.0 4.0 3.0 1.5 319 chr2L 10941083 intron dpr2 - chr2L 10941242 intron dpr2 - chr2L 10941402 intron dpr2 - chr2L_6_10940001 chr2L_10940001 RAL-714 166 chr2L 10946950 10946977 chr2L 10956165 10956192 roo 14 9214 4.0 6.0 5.0 2.3 9242 chr2L 10946950 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_14_10950001 chr2L_10950001 RAL-714 167 chr2L 11028196 11028212 chr2L 11028282 11028298 8 85 8.5 3.0 5.8 1.2 102 chr2L 11028196 intron Samuel - chr2L 11028247 intron Samuel - chr2L 11028298 intron Samuel - chr2L_8_11025001 chr2L_11025001 RAL-714 168 chr2L 11169478 11169501 chr2L 11169613 11169636 7 135 4.0 4.5 4.2 1.3 158 chr2L 11169478 intron Ca-beta - chr2L 11169557 intron Ca-beta - chr2L 11169636 intron Ca-beta - chr2L_7_11165001 chr2L_11165001 RAL-714 169 chr2L 11207475 11207503 chr2L 11207558 11207586 11 83 2.0 2.0 2.0 3.7 111 chr2L 11207475 intergenic not near genes chr2L 11207530 intergenic not near genes chr2L 11207586 intergenic not near genes chr2L_11_11205001 chr2L_11205001 RAL-714 170 chr2L 11224061 11224091 chr2L 11224172 11224201 6 111 3.0 1.0 2.0 2.0 140 chr2L 11224061 intron ab + chr2L 11224131 intron ab + chr2L 11224201 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-714 171 chr2L 11292399 11292408 chr2L 11292461 11292490 4 77 1.5 4.0 2.8 1.1 91 chr2L 11292399 intergenic not near genes chr2L 11292444 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_4_11290001 chr2L_11290001 RAL-714 172 chr2L 11404786 11404807 chr2L 11404862 11404883 10 76 2.5 1.5 2.0 3.3 97 chr2L 11404786 intergenic not near genes chr2L 11404834 intergenic not near genes chr2L 11404883 intergenic not near genes chr2L_10_11400001 chr2L_11400001 RAL-714 173 chr2L 11413306 11413321 chr2L 11413429 11413443 7 123 1.0 0.5 0.8 3.9 137 chr2L 11413306 intergenic not near genes chr2L 11413374 intergenic not near genes chr2L 11413443 intergenic not near genes chr2L_7_11410001 chr2L_11410001 RAL-714 174 chr2L 11418656 11418686 chr2L 11418735 11418765 6 79 1.5 2.0 1.8 2.1 109 chr2L 11418656 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418765 intergenic not near genes chr2L_6_11415001 chr2L_11415001 RAL-714 175 chr2L 11458943 11458977 chr2L 11459059 11459093 9 116 3.0 0.5 1.8 3.2 150 chr2L 11458943 intergenic not near genes chr2L 11459018 intergenic not near genes chr2L 11459093 intergenic not near genes chr2L_9_11455001 chr2L_11455001 RAL-714 176 chr2L 11480700 11480727 chr2L 11480779 11480806 5 79 3.0 2.0 2.5 1.4 106 chr2L 11480700 intergenic not near genes chr2L 11480753 intergenic not near genes chr2L 11480806 intergenic not near genes chr2L_5_11480001 chr2L_11480001 RAL-714 177 chr2L 11491129 11491157 chr2L 11491210 11491219 6 78 0.5 2.0 1.2 2.7 90 chr2L 11491129 intergenic not near genes chr2L 11491174 intergenic not near genes chr2L 11491219 intergenic not near genes chr2L_6_11490001 chr2L_11490001 RAL-714 178 chr2L 11537761 11537785 chr2L 11537878 11537901 4 116 1.5 1.5 1.5 1.6 140 chr2L 11537761 intergenic not near genes chr2L 11537831 intergenic not near genes chr2L 11537901 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-714 179 chr2L 11563641 11563669 chr2L 11568844 11568873 copia 7 5204 1.0 2.5 1.8 2.5 5232 chr2L 11563641 intergenic not near genes chr2L 11566257 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-714 180 chr2L 11570259 11570285 chr2L 11570656 11570667 8 395 2.5 5.0 3.8 1.7 408 chr2L 11570259 intergenic not near genes chr2L 11570463 intergenic not near genes chr2L 11570667 intergenic not near genes chr2L_8_11570001 chr2L_11570001 RAL-714 181 chr2L 11612665 11612697 chr2L 11612753 11612784 6 88 4.5 6.0 5.2 1.0 119 chr2L 11612665 intron kek2 + chr2L 11612724 intron kek2 + chr2L 11612784 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-714 182 chr2L 11614057 11614083 chr2L 11615552 11615578 hopper2 8 1490 4.0 4.0 4.0 1.6 1521 chr2L 11614057 intron kek2 + chr2L 11614818 intron kek2 + chr2L 11615578 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-714 183 chr2L 11672146 11672162 chr2L 11672253 11672268 4 107 1.5 1.0 1.2 1.8 122 chr2L 11672146 intergenic not near genes chr2L 11672207 intergenic not near genes chr2L 11672268 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-714 184 chr2L 11713510 11713540 chr2L 11720975 11721008 blood 9 7467 2.0 0.5 1.2 4.1 7498 chr2L 11713510 intergenic not near genes chr2L 11717259 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-714 185 chr2L 11750330 11750339 chr2L 11750616 11750625 6 286 0.0 2.0 1.0 3.0 295 chr2L 11750330 intergenic not near genes chr2L 11750478 intergenic not near genes chr2L 11750625 intergenic not near genes chr2L_6_11750001 chr2L_11750001 RAL-714 186 chr2L 11770600 11770623 chr2L 11770687 11770710 8 86 5.0 1.0 3.0 2.0 110 chr2L 11770600 intergenic not near genes chr2L 11770655 intergenic not near genes chr2L 11770710 intergenic not near genes chr2L_8_11770001 chr2L_11770001 RAL-714 187 chr2L 11841366 11841398 chr2L 11841444 11841476 5 78 1.0 0.0 0.5 3.3 110 chr2L 11841366 intron Pde1c - chr2L 11841421 intron Pde1c - chr2L 11841476 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-714 188 chr2L 11910961 11910982 chr2L 11911039 11911060 5 78 2.0 2.0 2.0 1.7 99 chr2L 11910961 intron Pde1c - chr2L 11911010 intron Pde1c - chr2L 11911060 intron Pde1c - chr2L_5_11910001 chr2L_11910001 RAL-714 189 chr2L 11919901 11919923 chr2L 11920179 11920200 7 278 2.5 0.0 1.2 3.2 299 chr2L 11919901 intron Pde1c - chr2L 11920050 intron Pde1c - chr2L 11920200 intron Pde1c - chr2L_7_11920001 chr2L_11920001 RAL-714 190 chr2L 11946995 11947026 chr2L 11947103 11947134 6 108 2.0 3.5 2.8 1.6 139 chr2L 11946995 3` UTR Cry + chr2L 11947064 3` UTR Cry + chr2L 11947134 intergenic Cry + chr2L_6_11945001 chr2L_11945001 RAL-714 191 chr2L 12067330 12067360 chr2L 12074382 12074412 297 6 7052 1.0 0.5 0.8 3.3 7082 chr2L 12067330 intergenic not near genes chr2L 12070871 intergenic not near genes chr2L 12074412 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-714 192 chr2L 12153936 12153960 chr2L 12154013 12154037 6 77 4.0 2.5 3.2 1.4 101 chr2L 12153936 exon CG31760 + chr2L 12153986 intron CG31760 + chr2L 12154037 intron CG31760 + chr2L_6_12150001 chr2L_12150001 RAL-714 193 chr2L 12272166 12272192 chr2L 12272242 12272268 4 76 2.5 1.0 1.8 1.4 102 chr2L 12272166 intron aret + chr2L 12272217 intron aret + chr2L 12272268 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-714 194 chr2L 12291668 12291695 chr2L 12291773 12291800 7 105 0.0 1.5 0.8 3.9 132 chr2L 12291668 intron aret + chr2L 12291734 intron aret + chr2L 12291800 intron aret + chr2L_7_12290001 chr2L_12290001 RAL-714 195 chr2L 12418424 12418438 chr2L 12418507 12418521 4 83 1.0 2.0 1.5 1.6 97 chr2L 12418424 intron vir-1 - chr2L 12418472 intron vir-1 - chr2L 12418521 intron vir-1 - chr2L_4_12415001 chr2L_12415001 RAL-714 196 chr2L 12426130 12426157 chr2L 12426213 12426240 13 83 3.5 4.0 3.8 2.7 110 chr2L 12426130 exon CG6405 + chr2L 12426185 exon CG6405 + chr2L 12426240 exon CG6405 + chr2L_13_12425001 chr2L_12425001 RAL-714 197 chr2L 12529413 12529437 chr2L 12529489 12529511 4 75 3.5 3.5 3.5 0.9 98 chr2L 12529413 intron bun - chr2L 12529462 intron bun - chr2L 12529511 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-714 198 chr2L 12558318 12558338 chr2L 12565447 12565467 HMS-Beagle 8 7128 3.0 1.0 2.0 2.7 7149 chr2L 12558318 intergenic not near genes chr2L 12561892 intergenic not near genes chr2L 12565467 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-714 199 chr2L 12638778 12638806 chr2L 12638881 12638909 5 103 3.0 2.5 2.8 1.3 131 chr2L 12638778 intron Ref2 - chr2L 12638844 intron Ref2 - chr2L 12638909 intron Ref2 - chr2L_5_12635001 chr2L_12635001 RAL-714 200 chr2L 12647711 12647737 chr2L 12647792 12647818 9 78 4.0 3.0 3.5 2.0 107 chr2L 12647711 intergenic not near genes chr2L 12647764 intergenic not near genes chr2L 12647818 intergenic not near genes chr2L_9_12645001 chr2L_12645001 RAL-714 201 chr2L 12693840 12693873 chr2L 12693917 12693950 13 77 6.5 6.0 6.2 1.8 110 chr2L 12693840 exon CG6153 + chr2L 12693895 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693950 3` UTR CG5780 - chr2L_13_12690001 chr2L_12690001 RAL-714 202 chr2L 12728921 12728949 chr2L 12729161 12729189 pogo 5 240 2.0 5.0 3.5 1.1 268 chr2L 12728921 intron MRP + chr2L 12729055 intron MRP + chr2L 12729189 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-714 203 chr2L 12731054 12731090 chr2L 12735821 12735857 F-element 9 4767 0.5 1.5 1.0 4.5 4803 chr2L 12731054 intron MRP + chr2L 12733456 intron MRP + chr2L 12735857 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-714 204 chr2L 12751309 12751333 chr2L 12751392 12751416 8 83 3.5 3.0 3.2 1.9 107 chr2L 12751309 intergenic not near genes chr2L 12751362 intergenic not near genes chr2L 12751416 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-714 205 chr2L 12791602 12791630 chr2L 12795277 12795305 F-element 10 3675 4.5 1.5 3.0 2.5 3703 chr2L 12791602 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795305 intergenic not near genes chr2L_10_12790001 chr2L_12790001 RAL-714 206 chr2L 12861693 12861709 chr2L 12863160 12863174 hobo 4 1466 2.0 2.0 2.0 1.3 1481 chr2L 12861693 intergenic not near genes chr2L 12862434 intergenic not near genes chr2L 12863174 intergenic not near genes chr2L_4_12860001 chr2L_12860001 RAL-714 207 chr2L 12889030 12889058 chr2L 12889112 12889141 4 83 4.5 3.0 3.8 0.8 111 chr2L 12889030 intergenic not near genes chr2L 12889086 intergenic not near genes chr2L 12889141 intergenic not near genes chr2L_4_12885001 chr2L_12885001 RAL-714 208 chr2L 12933850 12933883 chr2L 12941316 12941349 blood 12 7466 1.5 2.0 1.8 4.3 7499 chr2L 12933850 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_12_12935001 chr2L_12935001 RAL-714 209 chr2L 12949255 12949272 chr2L 12949348 12949364 5 93 6.5 4.0 5.2 0.8 109 chr2L 12949255 intergenic not near genes chr2L 12949310 intergenic not near genes chr2L 12949364 intergenic not near genes chr2L_5_12945001 chr2L_12945001 RAL-714 210 chr2L 13139463 13139486 chr2L 13139551 13139554 4 83 3.0 2.0 2.5 1.1 91 chr2L 13139463 intergenic not near genes chr2L 13139508 intergenic not near genes chr2L 13139554 intergenic not near genes chr2L_4_13135001 chr2L_13135001 RAL-714 211 chr2L 13204317 13204323 chr2L 13204415 13204422 4 98 8.0 4.5 6.2 0.6 105 chr2L 13204317 intron Pect + chr2L 13204370 intron Pect + chr2L 13204422 intron Pect + chr2L_4_13200001 chr2L_13200001 RAL-714 212 chr2L 13204326 13204334 chr2L 13204413 13204433 6 96 5.5 4.5 5.0 1.0 107 chr2L 13204326 intron Pect + chr2L 13204380 intron Pect + chr2L 13204433 intron Pect + chr2L_6_13200001 chr2L_13200001 RAL-714 213 chr2L 13231881 13231908 chr2L 13231992 13232010 4 109 7.5 5.0 6.2 0.6 129 chr2L 13231881 intergenic Prosalpha6T + chr2L 13231946 intergenic Prosalpha6T + chr2L 13232010 intergenic Prosalpha6T + chr2L_4_13230001 chr2L_13230001 RAL-714 214 chr2L 13266378 13266411 chr2L 13266465 13266498 5 88 4.5 4.5 4.5 0.9 120 chr2L 13266378 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266498 intron CG44085 + chr2L_5_13265001 chr2L_13265001 RAL-714 215 chr2L 13351824 13351850 chr2L 13351910 13351935 4 86 12.0 16.0 14.0 0.3 111 chr2L 13351824 exon CG9395 - chr2L 13351880 intron CG9395 - chr2L 13351935 exon CG9395 - chr2L_4_13350001 chr2L_13350001 RAL-714 216 chr2L 13405646 13405676 chr2L 13410443 13410473 Doc 12 4797 1.0 2.5 1.8 4.3 4827 chr2L 13405646 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-714 217 chr2L 13426376 13426395 chr2L 13426483 13426516 6 118 13.0 12.0 12.5 0.4 140 chr2L 13426376 intron CG42784 + chr2L 13426446 intron CG42784 + chr2L 13426516 intron CG42784 + chr2L_6_13425001 chr2L_13425001 RAL-714 218 chr2L 13481456 13481471 chr2L 13482063 13482078 jockey 6 607 3.5 4.5 4.0 1.2 622 chr2L 13481456 intron CG42784 + chr2L 13481767 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-714 219 chr2L 13517200 13517230 chr2L 13517288 13517318 7 88 12.0 13.0 12.5 0.5 118 chr2L 13517200 intron B4 - chr2L 13517259 intron B4 - chr2L 13517318 intron B4 - chr2L_7_13515001 chr2L_13515001 RAL-714 220 chr2L 13536290 13536302 chr2L 13536381 13536394 5 91 6.0 8.0 7.0 0.6 104 chr2L 13536290 intron B4 - chr2L 13536342 intron B4 - chr2L 13536394 intron B4 - chr2L_5_13535001 chr2L_13535001 RAL-714 221 chr2L 13591770 13591777 chr2L 13591855 13591862 4 85 0.5 1.0 0.8 2.2 92 chr2L 13591770 intron kuz + chr2L 13591816 intron kuz + chr2L 13591862 intron kuz + chr2L_4_13590001 chr2L_13590001 RAL-714 222 chr2L 13612669 13612692 chr2L 13612770 13612793 8 100 5.0 6.0 5.5 1.2 124 chr2L 13612669 intron kuz + chr2L 13612731 intron kuz + chr2L 13612793 intron kuz + chr2L_8_13610001 chr2L_13610001 RAL-714 223 chr2L 13752803 13752829 chr2L 13752920 13752947 9 117 3.0 6.0 4.5 1.6 144 chr2L 13752803 intron,intron CR44846 +,TM9SF4 + chr2L 13752875 intron,intron CR44846 +,TM9SF4 + chr2L 13752947 intron,intron CR44846 +,TM9SF4 + chr2L_9_13750001 chr2L_13750001 RAL-714 224 chr2L 13853083 13853113 chr2L 13862233 13862263 roo 10 9149 3.5 2.0 2.8 2.6 9180 chr2L 13853083 intron CenG1A + chr2L 13857673 intron CenG1A + chr2L 13862263 intron CenG1A + chr2L_10_13855001 chr2L_13855001 RAL-714 225 chr2L 13987223 13987235 chr2L 13987303 13987316 6 81 3.0 2.5 2.8 1.6 93 chr2L 13987223 intron rk - chr2L 13987270 intron rk - chr2L 13987316 intron rk - chr2L_6_13985001 chr2L_13985001 RAL-714 226 chr2L 14010402 14010430 chr2L 14010478 14010506 10 76 0.5 2.5 1.5 4.0 104 chr2L 14010402 intergenic not near genes chr2L 14010454 intergenic not near genes chr2L 14010506 intergenic not near genes chr2L_10_14010001 chr2L_14010001 RAL-714 227 chr2L 14063276 14063303 chr2L 14063355 14063384 7 81 7.0 5.5 6.2 1.0 108 chr2L 14063276 intron nAChRalpha5 + chr2L 14063330 intron nAChRalpha5 + chr2L 14063384 intron nAChRalpha5 + chr2L_7_14060001 chr2L_14060001 RAL-714 228 chr2L 14096156 14096164 chr2L 14096248 14096256 4 92 7.0 0.0 3.5 0.9 100 chr2L 14096156 intergenic not near genes chr2L 14096206 intergenic not near genes chr2L 14096256 intergenic not near genes chr2L_4_14095001 chr2L_14095001 RAL-714 229 chr2L 14125164 14125172 chr2L 14125531 14125539 4 367 3.5 6.5 5.0 0.7 375 chr2L 14125164 intergenic not near genes chr2L 14125352 intergenic not near genes chr2L 14125539 intergenic not near genes chr2L_4_14125001 chr2L_14125001 RAL-714 230 chr2L 14149157 14149184 chr2L 14149318 14149345 4 160 21.0 17.0 19.0 0.2 188 chr2L 14149157 intron CG17341 + chr2L 14149251 intron CG17341 + chr2L 14149345 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-714 231 chr2L 14160689 14160712 chr2L 14160775 14160798 8 86 1.5 2.5 2.0 2.7 109 chr2L 14160689 intergenic CG17341 +,CG43332 - chr2L 14160744 intergenic CG17341 +,CG43332 - chr2L 14160798 intergenic CG17341 +,CG43332 - chr2L_8_14160001 chr2L_14160001 RAL-714 232 chr2L 14180063 14180093 chr2L 14180139 14180169 11 76 1.0 1.0 1.0 5.5 106 chr2L 14180063 intron CG43333 - chr2L 14180116 intron CG43333 - chr2L 14180169 intron CG43333 - chr2L_11_14180001 chr2L_14180001 RAL-714 233 chr2L 14222074 14222101 chr2L 14222151 14222178 4 76 2.5 3.5 3.0 1.0 104 chr2L 14222074 5` UTR Dyrk2 - chr2L 14222126 intron Dyrk2 - chr2L 14222178 intron Dyrk2 - chr2L_4_14220001 chr2L_14220001 RAL-714 234 chr2L 14237128 14237161 chr2L 14237214 14237247 4 86 2.0 4.5 3.2 1.0 119 chr2L 14237128 intergenic not near genes chr2L 14237188 intergenic not near genes chr2L 14237247 intergenic not near genes chr2L_4_14235001 chr2L_14235001 RAL-714 235 chr2L 14243815 14243844 chr2L 14243907 14243936 7 92 4.5 2.0 3.2 1.7 121 chr2L 14243815 intergenic not near genes chr2L 14243876 intergenic not near genes chr2L 14243936 intergenic not near genes chr2L_7_14240001 chr2L_14240001 RAL-714 236 chr2L 14374778 14374806 chr2L 14374869 14374897 6 91 1.5 1.0 1.2 2.7 119 chr2L 14374778 intergenic not near genes chr2L 14374838 intergenic not near genes chr2L 14374897 intergenic not near genes chr2L_6_14370001 chr2L_14370001 RAL-714 237 chr2L 14532198 14532227 chr2L 14532278 14532307 6 80 4.5 8.0 6.2 0.8 109 chr2L 14532198 intergenic CR44852 - chr2L 14532252 intergenic CR44852 - chr2L 14532307 intergenic CR44852 - chr2L_6_14530001 chr2L_14530001 RAL-714 238 chr2L 14537665 14537675 chr2L 14537757 14537767 4 92 2.0 1.0 1.5 1.6 102 chr2L 14537665 intergenic not near genes chr2L 14537716 intergenic not near genes chr2L 14537767 intergenic not near genes chr2L_4_14535001 chr2L_14535001 RAL-714 239 chr2L 14564195 14564223 chr2L 14564271 14564299 5 73 7.0 9.0 8.0 0.6 104 chr2L 14564195 intergenic CG3473 - chr2L 14564247 intergenic not near genes chr2L 14564299 intergenic not near genes chr2L_5_14560001 chr2L_14560001 RAL-714 240 chr2L 14581481 14581512 chr2L 14581578 14581609 4 97 8.0 7.5 7.8 0.5 128 chr2L 14581481 intergenic not near genes chr2L 14581545 intergenic not near genes chr2L 14581609 intergenic not near genes chr2L_4_14580001 chr2L_14580001 RAL-714 241 chr2L 14588382 14588407 chr2L 14588536 14588561 7 154 5.0 0.0 2.5 2.0 179 chr2L 14588382 intergenic CG42680 - chr2L 14588472 intergenic CG42680 - chr2L 14588561 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-714 242 chr2L 14601976 14602001 chr2L 14602060 14602085 6 84 7.0 5.5 6.2 0.8 109 chr2L 14601976 exon osp - chr2L 14602030 intron osp - chr2L 14602085 intron osp - chr2L_6_14600001 chr2L_14600001 RAL-714 243 chr2L 14684022 14684042 chr2L 14684104 14684124 4 82 5.0 3.5 4.2 0.8 102 chr2L 14684022 intron osp - chr2L 14684073 intron osp - chr2L 14684124 intron osp - chr2L_4_14680001 chr2L_14680001 RAL-714 244 chr2L 14794286 14794299 chr2L 14794500 14794513 4 214 5.0 4.5 4.8 0.7 227 chr2L 14794286 intergenic CG18420 - chr2L 14794400 intergenic CG18420 - chr2L 14794513 intergenic CG18420 - chr2L_4_14790001 chr2L_14790001 RAL-714 245 chr2L 14803893 14803911 chr2L 14809095 14809114 copia 7 5202 1.5 4.0 2.8 1.8 5221 chr2L 14803893 intergenic not near genes chr2L 14806504 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-714 246 chr2L 14840983 14841007 chr2L 14841070 14841094 4 87 6.0 7.5 6.8 0.5 111 chr2L 14840983 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841094 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-714 247 chr2L 14889952 14889982 chr2L 14890377 14890407 jockey 8 425 2.5 1.5 2.0 2.7 455 chr2L 14889952 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890407 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-714 248 chr2L 14992062 14992069 chr2L 14992153 14992160 5 91 6.0 4.5 5.2 0.8 98 chr2L 14992062 intron mol - chr2L 14992111 intron mol - chr2L 14992160 intron mol - chr2L_5_14990001 chr2L_14990001 RAL-714 249 chr2L 15077905 15078093 chr2L 15077992 15078181 9 88 1.5 8.5 5.0 1.5 276 chr2L 15077905 intron CG15270 + chr2L 15078043 intron CG15270 + chr2L 15078181 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-714 250 chr2L 15083942 15083961 chr2L 15084898 15084918 4 957 6.0 5.5 5.8 0.6 976 chr2L 15083942 intron CG15270 + chr2L 15084430 intron CG15270 + chr2L 15084918 intron CG15270 + chr2L_4_15080001 chr2L_15080001 RAL-714 251 chr2L 15179532 15179537 chr2L 15179612 15179617 4 80 4.5 7.5 6.0 0.6 85 chr2L 15179532 intron CG4168 - chr2L 15179574 intron CG4168 - chr2L 15179617 intron CG4168 - chr2L_4_15175001 chr2L_15175001 RAL-714 252 chr2L 15204291 15204307 chr2L 15204572 15204587 4 280 5.0 7.0 6.0 0.6 296 chr2L 15204291 intergenic CR43357 + chr2L 15204439 intergenic CR43357 + chr2L 15204587 intergenic not near genes chr2L_4_15200001 chr2L_15200001 RAL-714 253 chr2L 15209257 15209270 chr2L 15209396 15209411 5 141 8.0 10.5 9.2 0.5 154 chr2L 15209257 intergenic CR44196 + chr2L 15209334 intergenic not near genes chr2L 15209411 intergenic not near genes chr2L_5_15205001 chr2L_15205001 RAL-714 254 chr2L 15226379 15226385 chr2L 15226453 15226461 4 75 2.0 4.0 3.0 1.0 82 chr2L 15226379 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226461 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-714 255 chr2L 15283878 15283903 chr2L 15284170 15284195 9 292 5.5 4.0 4.8 1.6 317 chr2L 15283878 intergenic not near genes chr2L 15284036 intergenic not near genes chr2L 15284195 intergenic not near genes chr2L_9_15280001 chr2L_15280001 RAL-714 256 chr2L 15303219 15303234 chr2L 15303383 15303398 5 164 2.0 3.5 2.8 1.3 179 chr2L 15303219 intergenic not near genes chr2L 15303308 intergenic not near genes chr2L 15303398 intergenic not near genes chr2L_5_15300001 chr2L_15300001 RAL-714 257 chr2L 15309349 15309380 chr2L 15309452 15309483 4 103 2.5 0.0 1.2 1.8 134 chr2L 15309349 intergenic not near genes chr2L 15309416 intergenic not near genes chr2L 15309483 intergenic not near genes chr2L_4_15305001 chr2L_15305001 RAL-714 258 chr2L 15343538 15343560 chr2L 15343623 15343645 5 85 1.0 1.0 1.0 2.5 107 chr2L 15343538 intergenic not near genes chr2L 15343592 intergenic not near genes chr2L 15343645 intergenic not near genes chr2L_5_15340001 chr2L_15340001 RAL-714 259 chr2L 15558525 15558552 chr2L 15558629 15558658 5 106 11.5 16.0 13.8 0.3 133 chr2L 15558525 intron kek3 + chr2L 15558592 intron kek3 + chr2L 15558658 intron kek3 + chr2L_5_15555001 chr2L_15555001 RAL-714 260 chr2L 15586409 15586423 chr2L 15593461 15593475 297 5 7052 2.5 3.0 2.8 1.3 7066 chr2L 15586409 intergenic not near genes chr2L 15589942 intergenic not near genes chr2L 15593475 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-714 261 chr2L 15915651 15915681 chr2L 15915729 15915759 5 78 11.0 9.0 10.0 0.5 108 chr2L 15915651 intron beat-Ib - chr2L 15915705 intron beat-Ib - chr2L 15915759 intron beat-Ib - chr2L_5_15915001 chr2L_15915001 RAL-714 262 chr2L 15929696 15929719 chr2L 15929772 15929795 7 76 0.5 1.0 0.8 3.9 99 chr2L 15929696 intron beat-Ib - chr2L 15929746 intron beat-Ib - chr2L 15929795 intron beat-Ib - chr2L_7_15925001 chr2L_15925001 RAL-714 263 chr2L 16043564 16043593 chr2L 16043649 16043678 5 85 1.0 1.0 1.0 2.5 114 chr2L 16043564 intron,intron BicC +,CG45084 + chr2L 16043621 intron,intron BicC +,CG45084 + chr2L 16043678 intron,intron BicC +,CG45084 + chr2L_5_16040001 chr2L_16040001 RAL-714 264 chr2L 16049272 16049304 chr2L 16049357 16049389 4 85 3.5 2.5 3.0 1.0 117 chr2L 16049272 intergenic not near genes chr2L 16049330 intergenic not near genes chr2L 16049389 intergenic not near genes chr2L_4_16045001 chr2L_16045001 RAL-714 265 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 10.0 16.5 13.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-714 266 chr2L 16090187 16090196 chr2L 16090277 16090279 4 88 3.0 0.5 1.8 1.4 92 chr2L 16090187 intergenic not near genes chr2L 16090233 intergenic not near genes chr2L 16090279 intergenic not near genes chr2L_4_16090001 chr2L_16090001 RAL-714 267 chr2L 16210492 16210516 chr2L 16210571 16210594 6 78 3.0 4.0 3.5 1.3 102 chr2L 16210492 intergenic not near genes chr2L 16210543 intergenic not near genes chr2L 16210594 intergenic not near genes chr2L_6_16210001 chr2L_16210001 RAL-714 268 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133321 7.0 16.5 11.8 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-714 269 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 10.0 16.5 13.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-714 270 chr2L 16243835 16243853 chr2L 16243930 16243948 5 95 2.0 0.0 1.0 2.5 113 chr2L 16243835 exon CG42818 + chr2L 16243892 exon CG42818 + chr2L 16243948 exon CG42818 + chr2L_5_16240001 chr2L_16240001 RAL-714 271 chr2L 16254898 16254917 chr2L 16255155 16255176 5 258 2.5 5.0 3.8 1.0 278 chr2L 16254898 intron PRL-1 - chr2L 16255037 intron PRL-1 - chr2L 16255176 intron PRL-1 - chr2L_5_16255001 chr2L_16255001 RAL-714 272 chr2L 16280253 16280287 chr2L 16281421 16281458 1360 10 1166 4.0 5.0 4.5 1.8 1205 chr2L 16280253 intron crp - chr2L 16280856 intron crp - chr2L 16281458 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-714 273 chr2L 16363942 16363975 chr2L 16364188 16364221 7 246 1.0 0.0 0.5 4.7 279 chr2L 16363942 intergenic not near genes chr2L 16364082 intergenic not near genes chr2L 16364221 intergenic not near genes chr2L_7_16360001 chr2L_16360001 RAL-714 274 chr2L 16535253 16535280 chr2L 16535373 16535400 6 120 3.5 3.0 3.2 1.4 147 chr2L 16535253 intergenic CR45355 - chr2L 16535326 intergenic CR45355 - chr2L 16535400 intergenic CR45355 - chr2L_6_16535001 chr2L_16535001 RAL-714 275 chr2L 16654702 16654733 chr2L 16654795 16654826 4 93 1.5 4.0 2.8 1.1 124 chr2L 16654702 intron CG42389 + chr2L 16654764 intron CG42389 + chr2L 16654826 intron CG42389 + chr2L_4_16650001 chr2L_16650001 RAL-714 276 chr2L 16709081 16709101 chr2L 16709165 16709185 13 84 2.5 4.0 3.2 3.1 104 chr2L 16709081 intron CG31808 - chr2L 16709133 intron CG31808 - chr2L 16709185 intron CG31808 - chr2L_13_16705001 chr2L_16705001 RAL-714 277 chr2L 16764978 16764995 chr2L 16765058 16765075 6 80 2.5 3.5 3.0 1.5 97 chr2L 16764978 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765075 intergenic not near genes chr2L_6_16765001 chr2L_16765001 RAL-714 278 chr2L 16867025 16867038 chr2L 16867120 16867133 4 95 0.5 1.0 0.8 2.2 108 chr2L 16867025 intergenic not near genes chr2L 16867079 intergenic not near genes chr2L 16867133 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-714 279 chr2L 16879190 16879207 chr2L 16879316 16879333 4 126 3.0 5.0 4.0 0.8 143 chr2L 16879190 exon CG32832 - chr2L 16879262 5` UTR CG32832 - chr2L 16879333 intergenic CG32832 -,CG31743 +,CG34313 + chr2L_4_16875001 chr2L_16875001 RAL-714 280 chr2L 16927558 16927564 chr2L 16928213 16928219 4 654 5.5 2.0 3.8 0.8 661 chr2L 16927558 intergenic not near genes chr2L 16927888 intergenic not near genes chr2L 16928219 intergenic not near genes chr2L_4_16925001 chr2L_16925001 RAL-714 281 chr2L 16940009 16940015 chr2L 16940087 16940093 7 78 2.5 4.5 3.5 1.6 84 chr2L 16940009 intergenic not near genes chr2L 16940051 intergenic not near genes chr2L 16940093 intergenic not near genes chr2L_7_16940001 chr2L_16940001 RAL-714 282 chr2L 16958112 16958127 chr2L 16962898 16962915 Doc 4 4788 0.5 1.5 1.0 2.0 4803 chr2L 16958112 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962915 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-714 283 chr2L 17005418 17005434 chr2L 17005515 17005531 5 97 2.5 3.5 3.0 1.2 113 chr2L 17005418 intergenic not near genes chr2L 17005474 intergenic not near genes chr2L 17005531 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-714 284 chr2L 17062755 17062791 chr2L 17062837 17062873 4 82 0.5 1.5 1.0 2.0 118 chr2L 17062755 intergenic not near genes chr2L 17062814 intergenic not near genes chr2L 17062873 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-714 285 chr2L 17087383 17087405 chr2L 17087498 17087523 4 117 0.5 1.0 0.8 2.2 140 chr2L 17087383 intergenic CG12620 + chr2L 17087453 intergenic CG12620 + chr2L 17087523 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-714 286 chr2L 17101900 17101914 chr2L 17101977 17101991 8 77 0.0 1.0 0.5 5.3 91 chr2L 17101900 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_8_17100001 chr2L_17100001 RAL-714 287 chr2L 17120849 17120874 chr2L 17120928 17120953 5 79 3.0 2.0 2.5 1.4 104 chr2L 17120849 intergenic not near genes chr2L 17120901 intergenic not near genes chr2L 17120953 intergenic not near genes chr2L_5_17120001 chr2L_17120001 RAL-714 288 chr2L 17158729 17158755 chr2L 17158832 17158858 4 102 2.5 2.0 2.2 1.2 129 chr2L 17158729 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158794 intron,intron CG34106 +,beat-IIIa + chr2L 17158858 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-714 289 chr2L 17264741 17264770 chr2L 17264821 17264850 12 80 2.5 1.5 2.0 4.0 109 chr2L 17264741 intergenic not near genes chr2L 17264796 intergenic not near genes chr2L 17264850 intergenic not near genes chr2L_12_17260001 chr2L_17260001 RAL-714 290 chr2L 17273191 17273227 chr2L 17277974 17278010 F-element 11 4782 1.5 1.5 1.5 4.4 4819 chr2L 17273191 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278010 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-714 291 chr2L 17292892 17292912 chr2L 17292969 17292990 10 78 1.0 3.0 2.0 3.3 98 chr2L 17292892 intergenic not near genes chr2L 17292941 intergenic not near genes chr2L 17292990 intergenic not near genes chr2L_10_17290001 chr2L_17290001 RAL-714 292 chr2L 17327910 17327925 chr2L 17327995 17328011 7 86 5.0 3.0 4.0 1.4 101 chr2L 17327910 intergenic not near genes chr2L 17327960 intergenic not near genes chr2L 17328011 intergenic not near genes chr2L_7_17325001 chr2L_17325001 RAL-714 293 chr2L 17329071 17329105 chr2L 17329199 17329233 8 128 2.0 1.5 1.8 2.9 162 chr2L 17329071 intergenic not near genes chr2L 17329152 intergenic not near genes chr2L 17329233 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-714 294 chr2L 17344883 17344905 chr2L 17344960 17344982 4 77 2.5 1.5 2.0 1.3 99 chr2L 17344883 intergenic not near genes chr2L 17344932 intergenic not near genes chr2L 17344982 intergenic not near genes chr2L_4_17340001 chr2L_17340001 RAL-714 295 chr2L 17399331 17399359 chr2L 17399481 17399509 12 150 1.5 1.5 1.5 4.8 178 chr2L 17399331 intron CLIP-190 + chr2L 17399420 intron CLIP-190 + chr2L 17399509 intron CLIP-190 + chr2L_12_17395001 chr2L_17395001 RAL-714 296 chr2L 17432030 17432049 chr2L 17432137 17432156 1360 8 106 0.0 0.5 0.2 6.7 126 chr2L 17432030 intron Dif - chr2L 17432093 intron Dif - chr2L 17432156 intron Dif - chr2L_8_17430001 chr2L_17430001 RAL-714 297 chr2L 17443506 17443528 chr2L 17443593 17443615 9 87 2.0 4.5 3.2 2.1 109 chr2L 17443506 intron dl - chr2L 17443560 intron dl - chr2L 17443615 intron dl - chr2L_9_17440001 chr2L_17440001 RAL-714 298 chr2L 17543590 17543626 chr2L 17543683 17543719 10 91 2.0 1.0 1.5 4.0 129 chr2L 17543590 intergenic not near genes chr2L 17543654 intergenic not near genes chr2L 17543719 intergenic not near genes chr2L_10_17540001 chr2L_17540001 RAL-714 299 chr2L 17748608 17748640 chr2L 17748712 17748745 9 105 1.0 2.5 1.8 3.2 137 chr2L 17748608 intron CadN - chr2L 17748676 intron CadN - chr2L 17748745 intron CadN - chr2L_9_17745001 chr2L_17745001 RAL-714 300 chr2L 17805518 17805544 chr2L 17805657 17805685 5 141 3.0 1.5 2.2 1.6 167 chr2L 17805518 intron CadN2 - chr2L 17805602 intron CadN2 - chr2L 17805685 intron CadN2 - chr2L_5_17805001 chr2L_17805001 RAL-714 301 chr2L 17819922 17819950 chr2L 17825125 17825153 copia 7 5203 1.5 2.0 1.8 2.5 5231 chr2L 17819922 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-714 302 chr2L 17837172 17837182 chr2L 17837254 17837282 4 95 0.5 2.5 1.5 1.6 110 chr2L 17837172 intron CadN2 - chr2L 17837227 intron CadN2 - chr2L 17837282 intron CadN2 - chr2L_4_17835001 chr2L_17835001 RAL-714 303 chr2L 17893695 17893715 chr2L 17899701 17899720 7 6006 11.5 8.5 10.0 0.6 6025 chr2L 17893695 intergenic CR43420 + chr2L 17896708 intergenic not near genes chr2L 17899720 intergenic not near genes chr2L_7_17895001 chr2L_17895001 RAL-714 304 chr2L 17911962 17911971 chr2L 17914139 17914149 pogo 4 2178 3.0 2.5 2.8 1.1 2187 chr2L 17911962 intergenic not near genes chr2L 17913056 intergenic not near genes chr2L 17914149 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-714 305 chr2L 17938688 17938720 chr2L 17938774 17938806 8 86 2.5 1.0 1.8 2.9 118 chr2L 17938688 intergenic CR44399 - chr2L 17938747 intergenic CR44399 - chr2L 17938806 intergenic CR44399 - chr2L_8_17935001 chr2L_17935001 RAL-714 306 chr2L 17951945 17951978 chr2L 17953411 17953444 hobo 10 1466 3.5 1.5 2.5 2.9 1499 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953444 intergenic not near genes chr2L_10_17950001 chr2L_17950001 RAL-714 307 chr2L 18080767 18080791 chr2L 18080977 18081001 8 210 15.5 16.0 15.8 0.5 234 chr2L 18080767 3` UTR Arr1 + chr2L 18080884 3` UTR Arr1 + chr2L 18081001 3` UTR Arr1 + chr2L_8_18080001 chr2L_18080001 RAL-714 308 chr2L 18177776 18177791 chr2L 18177875 18177890 5 99 2.0 1.0 1.5 2.0 114 chr2L 18177776 intron CG42750 - chr2L 18177833 intron CG42750 - chr2L 18177890 intron CG42750 - chr2L_5_18175001 chr2L_18175001 RAL-714 309 chr2L 18235062 18235080 chr2L 18235194 18235212 7 131 5.5 3.0 4.2 1.3 150 chr2L 18235062 intron CG42750 - chr2L 18235137 intron CG42750 - chr2L 18235212 intron CG42750 - chr2L_7_18235001 chr2L_18235001 RAL-714 310 chr2L 18235082 18235095 chr2L 18235191 18235227 4 126 2.0 3.0 2.5 1.1 145 chr2L 18235082 intron CG42750 - chr2L 18235154 intron CG42750 - chr2L 18235227 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-714 311 chr2L 18248453 18248476 chr2L 18248531 18248554 4 78 3.5 0.5 2.0 1.3 101 chr2L 18248453 intron CG42750 - chr2L 18248504 intron CG42750 - chr2L 18248554 intron CG42750 - chr2L_4_18245001 chr2L_18245001 RAL-714 312 chr2L 18291528 18291562 chr2L 18291626 18291660 7 98 1.0 0.0 0.5 4.7 132 chr2L 18291528 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291594 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291660 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_7_18290001 chr2L_18290001 RAL-714 313 chr2L 18408026 18408045 chr2L 18412810 18412829 Doc 6 4784 1.5 0.0 0.8 3.3 4803 chr2L 18408026 intergenic not near genes chr2L 18410428 intergenic not near genes chr2L 18412829 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-714 314 chr2L 18442348 18442361 chr2L 18442427 18442440 5 79 0.5 3.5 2.0 1.7 92 chr2L 18442348 3` UTR RpS26 - chr2L 18442394 3` UTR RpS26 - chr2L 18442440 3` UTR RpS26 - chr2L_5_18440001 chr2L_18440001 RAL-714 315 chr2L 18449389 18449409 chr2L 18449490 18449510 4 101 1.5 0.5 1.0 2.0 121 chr2L 18449389 intergenic bsf -,ncm - chr2L 18449450 intergenic bsf -,ncm - chr2L 18449510 intergenic bsf - chr2L_4_18445001 chr2L_18445001 RAL-714 316 chr2L 18464814 18464819 chr2L 18464897 18464902 4 82 1.5 4.0 2.8 1.1 88 chr2L 18464814 intron let-7-C + chr2L 18464858 intron let-7-C + chr2L 18464902 intron let-7-C + chr2L_4_18460001 chr2L_18460001 RAL-714 317 chr2L 18535758 18535764 chr2L 18535844 18535852 4 88 0.0 0.0 0.0 4.0 94 chr2L 18535758 intron Pde11 - chr2L 18535805 intron Pde11 - chr2L 18535852 intron Pde11 - chr2L_4_18535001 chr2L_18535001 RAL-714 318 chr2L 16217660 16217660 chr2L 18622718 18622719 8 2405058 14.5 14.0 14.2 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_8_17420001 chr2L_17420001 RAL-714 319 chr2L 18771785 18771790 chr2L 18771870 18771875 5 85 6.0 9.0 7.5 0.6 90 chr2L 18771785 intron ham - chr2L 18771830 intron ham - chr2L 18771875 intron ham - chr2L_5_18770001 chr2L_18770001 RAL-714 320 chr2L 18898396 18898420 chr2L 18898478 18898500 9 80 4.0 1.0 2.5 2.6 104 chr2L 18898396 intergenic not near genes chr2L 18898448 intergenic not near genes chr2L 18898500 intergenic not near genes chr2L_9_18895001 chr2L_18895001 RAL-714 321 chr2L 19024096 19024097 chr2L 21768291 21768291 15 2744195 19.5 9.0 14.2 1.0 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_15_20395001 chr2L_20395001 RAL-714 322 chr2L 19147378 19147402 chr2L 19154413 19154437 297 4 7035 3.0 3.0 3.0 1.0 7059 chr2L 19147378 intron brat + chr2L 19150908 intron brat + chr2L 19154437 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-714 323 chr2L 19305608 19305631 chr2L 19305713 19305737 4 106 0.5 0.5 0.5 2.7 129 chr2L 19305608 intergenic not near genes chr2L 19305672 intergenic not near genes chr2L 19305737 intergenic not near genes chr2L_4_19305001 chr2L_19305001 RAL-714 324 chr2L 19309618 19309651 chr2L 19309698 19309731 7 80 2.0 3.0 2.5 2.0 113 chr2L 19309618 intergenic not near genes chr2L 19309674 intergenic not near genes chr2L 19309731 intergenic not near genes chr2L_7_19305001 chr2L_19305001 RAL-714 325 chr2L 19316195 19316211 chr2L 19316272 19316288 4 77 3.5 0.5 2.0 1.3 93 chr2L 19316195 intergenic not near genes chr2L 19316242 intergenic not near genes chr2L 19316288 intergenic not near genes chr2L_4_19315001 chr2L_19315001 RAL-714 326 chr2L 19340207 19340230 chr2L 19340276 19340306 8 74 2.5 6.0 4.2 1.5 99 chr2L 19340207 exon dnt - chr2L 19340256 exon dnt - chr2L 19340306 exon dnt - chr2L_8_19340001 chr2L_19340001 RAL-714 327 chr2L 19345018 19345044 chr2L 19357227 19357253 blood 5 12206 3.0 3.0 3.0 1.2 12235 chr2L 19345018 intron dnt - chr2L 19351136 intron dnt - chr2L 19357253 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-714 328 chr2L 19357548 19357567 chr2L 19357638 19357656 5 90 3.0 5.5 4.2 1.0 108 chr2L 19357548 intron dnt - chr2L 19357602 intron dnt - chr2L 19357656 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-714 329 chr2L 19378339 19378371 chr2L 19378422 19378454 11 82 3.0 2.0 2.5 3.1 115 chr2L 19378339 intergenic not near genes chr2L 19378396 intergenic not near genes chr2L 19378454 intergenic not near genes chr2L_11_19375001 chr2L_19375001 RAL-714 330 chr2L 19383993 19384020 chr2L 19384089 19384121 9 99 7.0 4.0 5.5 1.4 128 chr2L 19383993 exon fon - chr2L 19384057 exon fon - chr2L 19384121 exon fon - chr2L_9_19380001 chr2L_19380001 RAL-714 331 chr2L 19441065 19441083 chr2L 19441142 19441160 5 77 4.0 3.0 3.5 1.1 95 chr2L 19441065 intron CG10237 - chr2L 19441112 intron CG10237 - chr2L 19441160 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-714 332 chr2L 19466828 19466851 chr2L 19466907 19466930 4 79 1.5 2.0 1.8 1.4 102 chr2L 19466828 3` UTR tj + chr2L 19466879 3` UTR tj + chr2L 19466930 3` UTR tj + chr2L_4_19465001 chr2L_19465001 RAL-714 333 chr2L 19486887 19486915 chr2L 19486966 19486994 5 79 0.5 3.0 1.8 1.8 107 chr2L 19486887 intergenic CG13084 + chr2L 19486940 intergenic CG13084 + chr2L 19486994 intergenic CG13084 +,CG13083 + chr2L_5_19485001 chr2L_19485001 RAL-714 334 chr2L 19548294 19548301 chr2L 19548373 19548383 4 81 2.0 2.5 2.2 1.2 89 chr2L 19548294 intergenic Tep4 + chr2L 19548338 intergenic Tep4 + chr2L 19548383 intergenic Tep4 + chr2L_4_19545001 chr2L_19545001 RAL-714 335 chr2L 19560032 19560039 chr2L 19560284 19560291 5 252 0.5 6.0 3.2 1.2 259 chr2L 19560032 exon Tep5 + chr2L 19560162 exon Tep5 + chr2L 19560291 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-714 336 chr2L 19620095 19620131 chr2L 19621084 19621120 jockey 14 988 3.5 4.5 4.0 2.8 1025 chr2L 19620095 intron Lar + chr2L 19620608 intron Lar + chr2L 19621120 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-714 337 chr2L 19630984 19631009 chr2L 19631551 19631580 4 570 1.5 2.5 2.0 1.3 596 chr2L 19630984 intron Lar + chr2L 19631282 intron Lar + chr2L 19631580 intron Lar + chr2L_4_19630001 chr2L_19630001 RAL-714 338 chr2L 19638536 19638568 chr2L 19638624 19638656 8 88 3.0 3.0 3.0 2.0 120 chr2L 19638536 intron Lar + chr2L 19638596 intron Lar + chr2L 19638656 intron Lar + chr2L_8_19635001 chr2L_19635001 RAL-714 339 chr2L 19703535 19703562 chr2L 19712671 19712698 roo 10 9136 4.5 4.5 4.5 1.8 9163 chr2L 19703535 intron Lar + chr2L 19708116 intron Lar + chr2L 19712698 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-714 340 chr2L 19737353 19737389 chr2L 19740822 19740853 1360 11 3467 2.5 3.0 2.8 2.9 3500 chr2L 19737353 intergenic Nf-YB + chr2L 19739103 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-714 341 chr2L 19754871 19754903 chr2L 19754955 19754987 7 81 1.0 3.5 2.2 2.2 116 chr2L 19754871 intron CG10631 - chr2L 19754929 intron CG10631 - chr2L 19754987 intron CG10631 - chr2L_7_19750001 chr2L_19750001 RAL-714 342 chr2L 19762814 19762837 chr2L 19763056 19763078 pogo 7 241 3.5 1.5 2.5 2.0 264 chr2L 19762814 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763078 intron fbp - chr2L_7_19760001 chr2L_19760001 RAL-714 343 chr2L 19821795 19821820 chr2L 19821872 19821897 10 77 4.0 1.0 2.5 2.9 102 chr2L 19821795 intron sick + chr2L 19821846 intron sick + chr2L 19821897 intron sick + chr2L_10_19820001 chr2L_19820001 RAL-714 344 chr2L 19878989 19879015 chr2L 19879198 19879224 7 209 3.5 4.5 4.0 1.4 235 chr2L 19878989 intron sick + chr2L 19879106 intron sick + chr2L 19879224 intron sick + chr2L_7_19875001 chr2L_19875001 RAL-714 345 chr2L 19898961 19898985 chr2L 19899101 19899125 6 140 3.0 3.0 3.0 1.5 164 chr2L 19898961 intron sick + chr2L 19899043 intron sick + chr2L 19899125 intron sick + chr2L_6_19895001 chr2L_19895001 RAL-714 346 chr2L 20226257 20226286 chr2L 20226339 20226367 13 80 0.0 3.5 1.8 4.6 110 chr2L 20226257 intergenic not near genes chr2L 20226312 intergenic not near genes chr2L 20226367 intergenic not near genes chr2L_13_20225001 chr2L_20225001 RAL-714 347 chr2L 20236093 20236107 chr2L 20236644 20236658 4 551 0.5 3.5 2.0 1.3 565 chr2L 20236093 intergenic not near genes chr2L 20236376 intergenic not near genes chr2L 20236658 intergenic not near genes chr2L_4_20235001 chr2L_20235001 RAL-714 348 chr2L 20272119 20272143 chr2L 20282829 20282854 copia 6 10711 1.5 4.0 2.8 1.6 10735 chr2L 20272119 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-714 349 chr2L 20296514 20296539 chr2L 20296595 20296620 7 81 0.0 2.0 1.0 3.5 106 chr2L 20296514 intergenic CR43414 - chr2L 20296567 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_7_20295001 chr2L_20295001 RAL-714 350 chr2L 20315704 20315734 chr2L 20315797 20315827 9 92 2.0 3.5 2.8 2.4 123 chr2L 20315704 intron spir + chr2L 20315766 intron spir + chr2L 20315827 intron spir + chr2L_9_20315001 chr2L_20315001 RAL-714 351 chr2L 20338709 20338739 chr2L 20338788 20338820 15 80 3.5 3.5 3.5 3.3 111 chr2L 20338709 intron spir + chr2L 20338764 intron spir + chr2L 20338820 intron spir + chr2L_15_20335001 chr2L_20335001 RAL-714 352 chr2L 20463592 20463622 chr2L 20464047 20464077 8 455 2.0 2.0 2.0 2.7 485 chr2L 20463592 intergenic CG2493 - chr2L 20463834 intergenic CG2493 - chr2L 20464077 intergenic CR44980 - chr2L_8_20460001 chr2L_20460001 RAL-714 353 chr2L 20498697 20498705 chr2L 20498796 20498804 5 99 4.0 6.5 5.2 0.8 107 chr2L 20498697 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-714 354 chr2L 20568663 20568674 chr2L 20569053 20569064 X-element 6 390 2.5 2.0 2.2 1.9 401 chr2L 20568663 intron CR45347 + chr2L 20568864 intron CR45347 + chr2L 20569064 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-714 355 chr2L 20576219 20576249 chr2L 20583685 20583717 blood 10 7467 2.0 1.5 1.8 3.6 7498 chr2L 20576219 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-714 356 chr2L 20588557 20588576 chr2L 20588631 20588659 6 84 2.5 1.0 1.8 2.1 102 chr2L 20588557 intron CR44909 - chr2L 20588608 intron CR44909 - chr2L 20588659 intron CR44909 - chr2L_6_20585001 chr2L_20585001 RAL-714 357 chr2L 20600661 20600678 chr2L 20600860 20600877 6 198 3.0 1.5 2.2 1.9 216 chr2L 20600661 intron CR44909 - chr2L 20600769 intron CR44909 - chr2L 20600877 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-714 358 chr2L 20618184 20618220 chr2L 20618386 20618415 8 196 1.5 1.5 1.5 3.2 231 chr2L 20618184 intron CR44909 - chr2L 20618300 intron CR44909 - chr2L 20618415 intron,3` UTR CR44909 -,mir-288 - chr2L_8_20615001 chr2L_20615001 RAL-714 359 chr2L 20648177 20648185 chr2L 20648358 20648363 4 179 23.0 1.5 12.2 0.3 186 chr2L 20648177 intron Uhg3 + chr2L 20648270 5` UTR Uhg3 + chr2L 20648363 5` UTR Uhg3 + chr2L_4_20645001 chr2L_20645001 RAL-714 360 chr2L 20668690 20668721 chr2L 20668766 20668797 10 75 2.0 5.0 3.5 2.2 107 chr2L 20668690 intron CG31678 - chr2L 20668744 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_10_20665001 chr2L_20665001 RAL-714 361 chr2L 20826517 20826545 chr2L 20826597 20826625 7 80 2.5 1.5 2.0 2.3 108 chr2L 20826517 intron CG9331 + chr2L 20826571 intron CG9331 + chr2L 20826625 intron CG9331 + chr2L_7_20825001 chr2L_20825001 RAL-714 362 chr2L 20835809 20835837 chr2L 20836525 20836554 Quasimodo 4 716 1.5 1.5 1.5 1.6 745 chr2L 20835809 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836554 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-714 363 chr2L 20840038 20840056 chr2L 20840250 20840267 5 212 4.0 5.0 4.5 0.9 229 chr2L 20840038 intergenic not near genes chr2L 20840152 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_5_20840001 chr2L_20840001 RAL-714 364 chr2L 20846770 20846792 chr2L 20846854 20846876 4 84 2.5 3.5 3.0 1.0 106 chr2L 20846770 intron CG31676 + chr2L 20846823 intron CG31676 + chr2L 20846876 intron CG31676 + chr2L_4_20845001 chr2L_20845001 RAL-714 365 chr2L 20862582 20862595 chr2L 20862679 20862692 6 97 0.0 2.0 1.0 3.0 110 chr2L 20862582 intergenic not near genes chr2L 20862637 intergenic not near genes chr2L 20862692 intergenic not near genes chr2L_6_20860001 chr2L_20860001 RAL-714 366 chr2L 20891540 20891546 chr2L 20896641 20896645 jockey 4 5100 1.5 2.0 1.8 1.4 5105 chr2L 20891540 intron,intron CG43739 -,sky - chr2L 20894092 intron,intron CG43739 -,sky - chr2L 20896645 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 RAL-714 367 chr2L 20901472 20901486 chr2L 20902636 20902650 1360 6 1164 1.5 6.5 4.0 1.2 1178 chr2L 20901472 intron,intron CG43739 -,sky - chr2L 20902061 intron,intron CG43739 -,sky - chr2L 20902650 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-714 368 chr2L 20911028 20911059 chr2L 20911104 20911135 15 76 4.0 2.0 3.0 3.8 107 chr2L 20911028 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911135 intron,intron CG43739 -,sky - chr2L_15_20910001 chr2L_20910001 RAL-714 369 chr2L 20952009 20952033 chr2L 20952117 20952141 4 108 0.0 3.5 1.8 1.4 132 chr2L 20952009 intergenic not near genes chr2L 20952075 intergenic not near genes chr2L 20952141 intergenic not near genes chr2L_4_20950001 chr2L_20950001 RAL-714 370 chr2L 20976643 20976677 chr2L 20981458 20981491 X-element 9 4815 0.5 1.0 0.8 5.0 4848 chr2L 20976643 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981491 intron CG42238 - chr2L_9_20975001 chr2L_20975001 RAL-714 371 chr2L 21020276 21020309 chr2L 21023953 21023986 NOF 11 3677 2.0 2.5 2.2 3.4 3710 chr2L 21020276 intron CG42238 - chr2L 21022131 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-714 372 chr2L 21041136 21041168 chr2L 21049397 21049429 Tirant 5 8261 3.0 2.0 2.5 1.4 8293 chr2L 21041136 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-714 373 chr2L 21074918 21074952 chr2L 21075009 21075043 8 91 1.0 0.5 0.8 4.4 125 chr2L 21074918 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075043 intergenic tadr + chr2L_8_21070001 chr2L_21070001 RAL-714 374 chr2L 21169848 21169868 chr2L 21169930 21169950 5 82 3.0 1.5 2.2 1.6 102 chr2L 21169848 intron Acon + chr2L 21169899 intron Acon + chr2L 21169950 intron Acon + chr2L_5_21165001 chr2L_21165001 RAL-714 375 chr2L 21286603 21286627 chr2L 21286681 21286704 6 78 3.0 0.5 1.8 2.1 101 chr2L 21286603 exon Mio - chr2L 21286654 intron Mio - chr2L 21286704 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-714 376 chr2L 21315816 21315827 chr2L 21315894 21315905 6 78 1.5 2.5 2.0 2.0 89 chr2L 21315816 intron crc + chr2L 21315860 intron crc + chr2L 21315905 intron crc + chr2L_6_21315001 chr2L_21315001 RAL-714 377 chr2L 21347549 21347582 chr2L 21355021 21355054 blood 4 7472 0.5 1.0 0.8 2.2 7505 chr2L 21347549 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355054 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-714 378 chr2L 21355614 21355637 chr2L 21355759 21355782 4 145 0.5 1.5 1.0 2.0 168 chr2L 21355614 intron Tsp39D + chr2L 21355698 intron Tsp39D + chr2L 21355782 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-714 379 chr2L 21769954 21769980 chr2L 21770035 21770061 11 81 2.5 4.0 3.2 2.6 107 chr2L 21769954 intron CG31612 - chr2L 21770008 intron CG31612 - chr2L 21770061 intron CG31612 - chr2L_11_21770001 chr2L_21770001 RAL-714 380 chr2L 21819334 21819359 chr2L 21819422 21819447 8 87 0.5 3.5 2.0 2.7 113 chr2L 21819334 intergenic CR44786 + chr2L 21819390 intergenic CR44786 + chr2L 21819447 intergenic CR44786 + chr2L_8_21815001 chr2L_21815001 RAL-714 381 chr2L 21845197 21845218 chr2L 21845271 21845275 9 71 5.5 3.0 4.2 1.7 78 chr2L 21845197 intergenic not near genes chr2L 21845236 intergenic not near genes chr2L 21845275 intergenic not near genes chr2L_9_21845001 chr2L_21845001 RAL-714 382 chr2L 21981693 21981714 chr2L 21990858 21990877 roo 5 9163 4.0 3.5 3.8 1.0 9184 chr2L 21981693 exon CG2528 - chr2L 21986285 intron CG2528 - chr2L 21990877 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-714 383 chr2L 22191847 22192058 chr2L 22191935 22192147 13 88 1.0 3.0 2.0 4.3 300 chr2L 22191847 intron Ir40a - chr2L 22191997 intron Ir40a - chr2L 22192147 intron Ir40a - chr2L_13_22190001 chr2L_22190001 RAL-714 384 chr2L 22239429 22239453 chr2L 22239510 22239534 8 81 3.5 4.0 3.8 1.7 105 chr2L 22239429 3` UTR CR43765 - chr2L 22239482 3` UTR CR43765 - chr2L 22239534 3` UTR CR43765 - chr2L_8_22235001 chr2L_22235001 RAL-714 385 chr2L 22350262 22350292 chr2L 22350364 22350393 7 102 3.0 2.5 2.8 1.8 131 chr2L 22350262 intron CG17018 + chr2L 22350328 intron CG17018 + chr2L 22350393 intron CG17018 + chr2L_7_22350001 chr2L_22350001 RAL-714 386 chr2L 22545978 22546009 chr2L 22546074 22546104 9 95 2.0 4.0 3.0 2.2 126 chr2L 22545978 intron CG17490 + chr2L 22546041 intron CG17490 + chr2L 22546104 intron CG17490 + chr2L_9_22545001 chr2L_22545001 RAL-714 387 chr2L 22548922 22548943 chr2L 22550145 22550168 1360 6 1225 0.0 5.0 2.5 1.7 1246 chr2L 22548922 intergenic CG17490 + chr2L 22549545 intergenic not near genes chr2L 22550168 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-714 388 chr2L 22674067 22674096 chr2L 22674144 22674173 4 77 3.0 1.0 2.0 1.3 106 chr2L 22674067 intron CG40006 - chr2L 22674120 intron CG40006 - chr2L 22674173 intron CG40006 - chr2L_4_22670001 chr2L_22670001 RAL-714 389 chr2L 22676133 22676145 chr2L 22676371 22676383 5 237 1.5 1.5 1.5 2.0 250 chr2L 22676133 intron CG40006 - chr2L 22676258 intron CG40006 - chr2L 22676383 intron CG40006 - chr2L_5_22675001 chr2L_22675001 RAL-714 390 chr2L 22679808 22679827 chr2L 22684580 22684599 F-element 4 4772 3.5 3.0 3.2 1.0 4791 chr2L 22679808 intron CG40006 - chr2L 22682204 intron CG40006 - chr2L 22684599 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-714 391 chr2L 22693921 22693950 chr2L 22694008 22694022 10 85 1.0 1.0 1.0 5.0 101 chr2L 22693921 intron CG40006 - chr2L 22693972 intron CG40006 - chr2L 22694022 intron CG40006 - chr2L_10_22690001 chr2L_22690001 RAL-714 392 chr2L 22983947 22983962 chr2L 22984021 22984037 4 75 0.5 2.0 1.2 1.8 90 chr2L 22983947 intron cta + chr2L 22983992 intron cta + chr2L 22984037 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-714 393 chr2R 529333 529356 chr2R 537956 537981 Max-element 6 8625 2.5 4.0 3.2 1.4 8648 chr2R 529333 intron CG40378 + chr2R 533657 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-714 394 chr2R 552756 552785 chr2R 553974 554003 1360 10 1216 3.5 4.0 3.8 2.1 1247 chr2R 552756 intron CG40378 + chr2R 553380 intron CG40378 + chr2R 554003 intron CG40378 + chr2R_10_550001 chr2R_550001 RAL-714 395 chr2R 1365865 1365895 chr2R 1365973 1366007 8 111 3.5 2.5 3.0 2.0 142 chr2R 1365865 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366007 intron l(2)41Ab + chr2R_8_1365001 chr2R_1365001 RAL-714 396 chr2R 2015130 2015165 chr2R 2015207 2015242 4 77 1.0 1.0 1.0 2.0 112 chr2R 2015130 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_4_2015001 chr2R_2015001 RAL-714 397 chr2R 2498983 2499011 chr2R 2508130 2508158 roo 9 9147 3.5 4.0 3.8 1.9 9175 chr2R 2498983 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508158 intron MFS17 - chr2R_9_2500001 chr2R_2500001 RAL-714 398 chr2R 3144095 3144108 chr2R 3393373 3393386 Doc 4 249278 7.5 6.5 7.0 0.5 249291 chr2R 3144095 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393386 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-714 399 chr2R 3293757 3293771 chr2R 3293835 3293849 4 78 1.0 3.0 2.0 1.3 92 chr2R 3293757 intergenic not near genes chr2R 3293803 intergenic not near genes chr2R 3293849 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-714 400 chr2R 4312956 4312985 chr2R 4313040 4313069 10 84 1.5 0.5 1.0 5.0 113 chr2R 4312956 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313069 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-714 401 chr2R 4602843 4602857 chr2R 4603198 4603212 6 352 3.5 3.0 3.2 1.4 369 chr2R 4602843 intron p120ctn + chr2R 4603028 intron p120ctn + chr2R 4603212 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-714 402 chr2R 4621319 4621345 chr2R 4621859 4621885 7 540 3.0 3.5 3.2 1.7 566 chr2R 4621319 3` UTR CR44101 - chr2R 4621602 3` UTR CR44101 - chr2R 4621885 3` UTR CR44101 - chr2R_7_4620001 chr2R_4620001 RAL-714 403 chr2R 4622955 4622988 chr2R 4624111 4624147 1360 6 1158 1.5 1.5 1.5 2.4 1192 chr2R 4622955 intergenic CR44101 - chr2R 4623551 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-714 404 chr2R 4783249 4783270 chr2R 4783383 4783397 8 132 0.5 6.5 3.5 1.8 148 chr2R 4783249 intergenic not near genes chr2R 4783323 intergenic not near genes chr2R 4783397 intergenic not near genes chr2R_8_4780001 chr2R_4780001 RAL-714 405 chr2R 4821217 4821240 chr2R 4821303 4821326 4 86 1.0 1.0 1.0 2.0 109 chr2R 4821217 intron CG17528 - chr2R 4821272 intron CG17528 - chr2R 4821326 intron CG17528 - chr2R_4_4820001 chr2R_4820001 RAL-714 406 chr2R 4887620 4887641 chr2R 4887816 4887837 4 196 1.0 1.5 1.2 1.8 217 chr2R 4887620 intergenic not near genes chr2R 4887728 intergenic not near genes chr2R 4887837 intergenic not near genes chr2R_4_4885001 chr2R_4885001 RAL-714 407 chr2R 4933364 4933392 chr2R 4933919 4933938 7 557 2.5 3.5 3.0 1.8 574 chr2R 4933364 intron Ir41a + chr2R 4933651 intron Ir41a + chr2R 4933938 intron Ir41a + chr2R_7_4930001 chr2R_4930001 RAL-714 408 chr2R 4940964 4940978 chr2R 4943414 4943428 5 2450 1.5 0.5 1.0 2.5 2464 chr2R 4940964 intron Ir41a + chr2R 4942196 intron Ir41a + chr2R 4943428 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-714 409 chr2R 4996333 4996345 chr2R 4996461 4996473 5 127 2.0 1.5 1.8 1.8 140 chr2R 4996333 intron Ir41a + chr2R 4996403 intron Ir41a + chr2R 4996473 intron Ir41a + chr2R_5_4995001 chr2R_4995001 RAL-714 410 chr2R 5144990 5145008 chr2R 5145231 5145249 5 241 2.0 3.5 2.8 1.3 259 chr2R 5144990 intron Atf6 + chr2R 5145120 intron Atf6 + chr2R 5145249 intron Atf6 + chr2R_5_5145001 chr2R_5145001 RAL-714 411 chr2R 5417995 5418027 chr2R 5420627 5420659 Burdock 8 2632 1.0 0.5 0.8 4.4 2664 chr2R 5417995 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_8_5415001 chr2R_5415001 RAL-714 412 chr2R 5472370 5472379 chr2R 5472465 5472474 4 94 3.0 3.5 3.2 1.0 104 chr2R 5472370 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472474 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-714 413 chr2R 5476353 5476380 chr2R 5476897 5476924 9 543 3.0 2.0 2.5 2.6 571 chr2R 5476353 intron CG30440 - chr2R 5476638 intron CG30440 - chr2R 5476924 intron CG30440 - chr2R_9_5475001 chr2R_5475001 RAL-714 414 chr2R 5541939 5541968 chr2R 5542172 5542201 5 233 1.0 1.0 1.0 2.5 262 chr2R 5541939 intron CG30438 + chr2R 5542070 intron CG30438 + chr2R 5542201 intron CG30438 + chr2R_5_5540001 chr2R_5540001 RAL-714 415 chr2R 5543199 5543215 chr2R 5547283 5547299 invader1 4 4084 0.0 1.0 0.5 2.7 4100 chr2R 5543199 intron CG30438 + chr2R 5545249 intron CG30438 + chr2R 5547299 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-714 416 chr2R 5581400 5581411 chr2R 5627609 5627620 4 46209 4.5 5.0 4.8 0.7 46220 chr2R 5581400 intergenic not near genes chr2R 5604510 exon Fis1 - chr2R 5627620 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-714 417 chr2R 5772535 5772548 chr2R 5772628 5772642 5 92 1.0 1.5 1.2 2.3 107 chr2R 5772535 3` UTR Gp210 + chr2R 5772588 3` UTR Gp210 + chr2R 5772642 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-714 418 chr2R 5790462 5790487 chr2R 5790547 5790572 7 85 3.5 2.0 2.8 1.8 110 chr2R 5790462 intergenic not near genes chr2R 5790517 intergenic not near genes chr2R 5790572 intergenic not near genes chr2R_7_5790001 chr2R_5790001 RAL-714 419 chr2R 5869276 5869305 chr2R 5874351 5874381 flea 9 5075 4.5 1.0 2.8 2.4 5105 chr2R 5869276 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874381 intergenic not near genes chr2R_9_5870001 chr2R_5870001 RAL-714 420 chr2R 5876866 5876901 chr2R 5876968 5877003 12 98 2.0 1.5 1.8 4.3 137 chr2R 5876866 intergenic not near genes chr2R 5876934 intergenic not near genes chr2R 5877003 intergenic not near genes chr2R_12_5875001 chr2R_5875001 RAL-714 421 chr2R 5878941 5878948 chr2R 5879005 5879028 4 76 0.5 1.5 1.0 2.0 87 chr2R 5878941 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879028 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-714 422 chr2R 5885366 5885373 chr2R 5885495 5885502 5 129 2.0 1.5 1.8 1.8 136 chr2R 5885366 5` UTR CR44125 + chr2R 5885434 5` UTR CR44125 + chr2R 5885502 5` UTR CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-714 423 chr2R 5991933 5991956 chr2R 5992021 5992044 4 87 2.0 1.5 1.8 1.4 111 chr2R 5991933 intron Src42A + chr2R 5991988 intron Src42A + chr2R 5992044 intron Src42A + chr2R_4_5990001 chr2R_5990001 RAL-714 424 chr2R 6057538 6057560 chr2R 6058957 6058980 12 1417 2.5 4.5 3.5 2.7 1442 chr2R 6057538 intron,exon CCHa2-R +,CG7856 - chr2R 6058259 intron,exon CCHa2-R +,CG7856 - chr2R 6058980 intron,exon CCHa2-R +,CG7856 - chr2R_12_6055001 chr2R_6055001 RAL-714 425 chr2R 6088370 6088377 chr2R 6088463 6088470 4 93 1.5 2.5 2.0 1.3 100 chr2R 6088370 intergenic not near genes chr2R 6088420 intergenic not near genes chr2R 6088470 intergenic not near genes chr2R_4_6085001 chr2R_6085001 RAL-714 426 chr2R 6096715 6096736 chr2R 6101912 6101931 BS 13 5197 5.5 4.0 4.8 2.2 5216 chr2R 6096715 intron EcR - chr2R 6099323 intron EcR - chr2R 6101931 intron EcR - chr2R_13_6095001 chr2R_6095001 RAL-714 427 chr2R 6129324 6129332 chr2R 6129402 6129410 4 78 3.0 3.5 3.2 1.0 86 chr2R 6129324 intron EcR - chr2R 6129367 intron EcR - chr2R 6129410 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-714 428 chr2R 6144408 6144440 chr2R 6144492 6144524 11 84 0.5 2.5 1.5 4.4 116 chr2R 6144408 intron EcR - chr2R 6144466 intron EcR - chr2R 6144524 intron EcR - chr2R_11_6140001 chr2R_6140001 RAL-714 429 chr2R 6168196 6168221 chr2R 6168278 6168302 5 82 4.0 1.0 2.5 1.4 106 chr2R 6168196 intron EcR - chr2R 6168249 intron EcR - chr2R 6168302 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-714 430 chr2R 6194686 6194701 chr2R 6194768 6194784 4 82 2.5 6.0 4.2 0.8 98 chr2R 6194686 intron Ptr - chr2R 6194735 intron Ptr - chr2R 6194784 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-714 431 chr2R 6530767 6530793 chr2R 6530847 6530873 9 80 3.0 0.5 1.8 3.2 106 chr2R 6530767 intron jing + chr2R 6530820 intron jing + chr2R 6530873 intron jing + chr2R_9_6530001 chr2R_6530001 RAL-714 432 chr2R 6551991 6552021 chr2R 6552094 6552124 11 103 4.5 3.5 4.0 2.2 133 chr2R 6551991 intron jing + chr2R 6552058 intron jing + chr2R 6552124 intron jing + chr2R_11_6550001 chr2R_6550001 RAL-714 433 chr2R 6876226 6876251 chr2R 6876306 6876333 5 82 1.5 1.5 1.5 2.0 107 chr2R 6876226 intron,intron CR44169 +,Spn42Da - chr2R 6876280 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_5_6875001 chr2R_6875001 RAL-714 434 chr2R 6965262 6965291 chr2R 6965348 6965377 8 85 3.5 2.5 3.0 2.0 115 chr2R 6965262 intron,intron mim -,CheB42c - chr2R 6965320 intron,intron mim -,CheB42c - chr2R 6965377 intron,intron mim -,CheB42c - chr2R_8_6965001 chr2R_6965001 RAL-714 435 chr2R 7025899 7025925 chr2R 7025988 7026014 9 88 2.0 3.5 2.8 2.4 115 chr2R 7025899 intron Tsp42Ef + chr2R 7025956 intron Tsp42Ef + chr2R 7026014 intron Tsp42Ef + chr2R_9_7025001 chr2R_7025001 RAL-714 436 chr2R 7091233 7091243 chr2R 7091315 7091325 4 82 1.0 3.5 2.2 1.2 92 chr2R 7091233 intron esn + chr2R 7091279 intron esn + chr2R 7091325 intron esn + chr2R_4_7090001 chr2R_7090001 RAL-714 437 chr2R 7153159 7153189 chr2R 7153245 7153274 9 85 4.0 1.5 2.8 2.4 115 chr2R 7153159 intron,intron pk +,Spn43Ab - chr2R 7153216 intron,intron pk +,Spn43Ab - chr2R 7153274 intron,intron pk +,Spn43Ab - chr2R_9_7150001 chr2R_7150001 RAL-714 438 chr2R 7171268 7171284 chr2R 7171354 7171369 7 86 5.0 7.0 6.0 1.0 101 chr2R 7171268 intron pk + chr2R 7171318 intron pk + chr2R 7171369 intron pk + chr2R_7_7170001 chr2R_7170001 RAL-714 439 chr2R 7196567 7196592 chr2R 7201341 7201367 F-element 5 4774 2.5 1.0 1.8 1.8 4800 chr2R 7196567 intron pk + chr2R 7198967 intron pk + chr2R 7201367 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-714 440 chr2R 7209848 7209874 chr2R 7217596 7217622 roo 10 7748 2.5 5.0 3.8 2.1 7774 chr2R 7209848 intron pk + chr2R 7213735 intron pk + chr2R 7217622 intron pk + chr2R_10_7210001 chr2R_7210001 RAL-714 441 chr2R 7235821 7235851 chr2R 7240912 7240943 jockey 6 5090 2.0 2.0 2.0 2.0 5122 chr2R 7235821 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-714 442 chr2R 7252728 7252756 chr2R 7252832 7252856 7 103 2.0 2.0 2.0 2.3 128 chr2R 7252728 intergenic not near genes chr2R 7252792 intergenic not near genes chr2R 7252856 intergenic not near genes chr2R_7_7250001 chr2R_7250001 RAL-714 443 chr2R 7294532 7294550 chr2R 7294616 7294634 7 84 3.5 9.0 6.2 1.0 102 chr2R 7294532 intron pwn + chr2R 7294583 intron pwn + chr2R 7294634 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-714 444 chr2R 7359852 7359863 chr2R 7360111 7360120 5 259 7.0 3.0 5.0 0.8 268 chr2R 7359852 intron Dscam1 - chr2R 7359986 intron Dscam1 - chr2R 7360120 intron Dscam1 - chr2R_5_7355001 chr2R_7355001 RAL-714 445 chr2R 7418138 7418155 chr2R 7418217 7418230 5 78 5.5 2.5 4.0 1.0 92 chr2R 7418138 intergenic not near genes chr2R 7418184 intergenic not near genes chr2R 7418230 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-714 446 chr2R 7434892 7434921 chr2R 7439193 7439222 Juan 5 4301 3.5 3.0 3.2 1.2 4330 chr2R 7434892 intergenic so + chr2R 7437057 intergenic not near genes chr2R 7439222 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-714 447 chr2R 7471987 7472013 chr2R 7472072 7472094 6 84 2.5 3.0 2.8 1.6 107 chr2R 7471987 intron Aldh-III - chr2R 7472040 intron Aldh-III - chr2R 7472094 intron Aldh-III - chr2R_6_7470001 chr2R_7470001 RAL-714 448 chr2R 7608407 7608428 chr2R 7613608 7613630 I-element 6 5202 0.0 0.0 0.0 6.0 5223 chr2R 7608407 intron CG1358 - chr2R 7611018 intron CG1358 - chr2R 7613630 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-714 449 chr2R 7628199 7628226 chr2R 7628276 7628302 8 76 3.5 2.5 3.0 2.0 103 chr2R 7628199 intron CG43340 + chr2R 7628250 intron CG43340 + chr2R 7628302 intron CG43340 + chr2R_8_7625001 chr2R_7625001 RAL-714 450 chr2R 7642868 7642886 chr2R 7642948 7642966 7 80 6.0 3.0 4.5 1.3 98 chr2R 7642868 intron CG43340 + chr2R 7642917 intron CG43340 + chr2R 7642966 intron CG43340 + chr2R_7_7640001 chr2R_7640001 RAL-714 451 chr2R 7742628 7742641 chr2R 7742882 7742896 5 254 2.0 4.0 3.0 1.2 268 chr2R 7742628 intron,intron CG30497 -,CG45093 - chr2R 7742762 intron,intron CG30497 -,CG45093 - chr2R 7742896 intron,intron CG30497 -,CG45093 - chr2R_5_7740001 chr2R_7740001 RAL-714 452 chr2R 7760284 7760307 chr2R 7760421 7760444 8 134 1.5 3.0 2.2 2.5 160 chr2R 7760284 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760444 intron,intron CG30497 -,CG45093 - chr2R_8_7760001 chr2R_7760001 RAL-714 453 chr2R 7769743 7769762 chr2R 7769820 7769839 5 77 2.5 2.5 2.5 1.4 96 chr2R 7769743 intron,intron CG30497 -,CG45093 - chr2R 7769791 intron,intron CG30497 -,CG45093 - chr2R 7769839 intron,intron CG30497 -,CG45093 - chr2R_5_7765001 chr2R_7765001 RAL-714 454 chr2R 7787099 7787114 chr2R 7787181 7787196 6 82 0.5 2.5 1.5 2.4 97 chr2R 7787099 intron CanB2 + chr2R 7787148 intron CanB2 + chr2R 7787196 intron CanB2 + chr2R_6_7785001 chr2R_7785001 RAL-714 455 chr2R 7815674 7815697 chr2R 7822142 7822165 Burdock 4 6468 4.0 3.5 3.8 0.8 6491 chr2R 7815674 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822165 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-714 456 chr2R 7881706 7881727 chr2R 7881803 7881824 8 97 2.5 3.5 3.0 2.0 118 chr2R 7881706 intron Dgk - chr2R 7881765 intron Dgk - chr2R 7881824 5` UTR Dgk - chr2R_8_7880001 chr2R_7880001 RAL-714 457 chr2R 7897140 7897156 chr2R 7897229 7897244 5 89 0.5 7.5 4.0 1.0 104 chr2R 7897140 intron CG30377 + chr2R 7897192 intron CG30377 + chr2R 7897244 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-714 458 chr2R 7915713 7915746 chr2R 7915805 7915838 4 92 1.5 4.0 2.8 1.1 125 chr2R 7915713 intron CG12159 - chr2R 7915776 intron CG12159 - chr2R 7915838 intron CG12159 - chr2R_4_7915001 chr2R_7915001 RAL-714 459 chr2R 7997013 7997033 chr2R 7997101 7997115 4 86 3.0 1.0 2.0 1.3 102 chr2R 7997013 intron Hey - chr2R 7997064 intron Hey - chr2R 7997115 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-714 460 chr2R 8015648 8015680 chr2R 8017671 8017702 7 2022 1.0 6.0 3.5 1.6 2054 chr2R 8015648 intergenic mir-4981 + chr2R 8016675 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-714 461 chr2R 8076682 8076706 chr2R 8076762 8076786 7 80 2.0 2.0 2.0 2.3 104 chr2R 8076682 intron lig + chr2R 8076734 intron lig + chr2R 8076786 intron lig + chr2R_7_8075001 chr2R_8075001 RAL-714 462 chr2R 8155579 8155606 chr2R 8155668 8155695 9 89 3.0 3.5 3.2 2.1 116 chr2R 8155579 intron,intron Lpin -,kermit - chr2R 8155637 intron,intron Lpin -,kermit - chr2R 8155695 intron,intron Lpin -,kermit - chr2R_9_8155001 chr2R_8155001 RAL-714 463 chr2R 8277635 8277669 chr2R 8277730 8277764 10 95 3.5 1.5 2.5 2.9 129 chr2R 8277635 5` UTR CR44280 + chr2R 8277700 5` UTR CR44280 + chr2R 8277764 5` UTR CR44280 + chr2R_10_8275001 chr2R_8275001 RAL-714 464 chr2R 8330874 8330894 chr2R 8331360 8331380 roo 5 486 2.5 5.0 3.8 1.0 506 chr2R 8330874 intron pdm3 + chr2R 8331127 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-714 465 chr2R 8379784 8379818 chr2R 8379880 8379914 9 95 2.5 0.5 1.5 3.6 130 chr2R 8379784 intron pdm3 + chr2R 8379849 intron pdm3 + chr2R 8379914 intron pdm3 + chr2R_9_8375001 chr2R_8375001 RAL-714 466 chr2R 8398208 8398244 chr2R 8402989 8403025 Doc 9 4781 2.5 1.5 2.0 3.0 4817 chr2R 8398208 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_9_8400001 chr2R_8400001 RAL-714 467 chr2R 8409020 8409046 chr2R 8409209 8409235 5 189 1.5 2.5 2.0 1.7 215 chr2R 8409020 intron CG2121 - chr2R 8409128 intron CG2121 - chr2R 8409235 intron CG2121 - chr2R_5_8405001 chr2R_8405001 RAL-714 468 chr2R 8478218 8478253 chr2R 8478310 8478345 7 91 2.0 2.5 2.2 2.2 127 chr2R 8478218 intron mtt - chr2R 8478282 intron mtt - chr2R 8478345 intron mtt - chr2R_7_8475001 chr2R_8475001 RAL-714 469 chr2R 8512078 8512107 chr2R 8512159 8512188 12 81 0.0 3.5 1.8 4.3 110 chr2R 8512078 intron mtt - chr2R 8512133 intron mtt - chr2R 8512188 intron mtt - chr2R_12_8510001 chr2R_8510001 RAL-714 470 chr2R 8544279 8544315 chr2R 8544366 8544401 10 87 0.0 2.5 1.2 4.5 122 chr2R 8544279 intergenic not near genes chr2R 8544340 intergenic not near genes chr2R 8544401 intergenic not near genes chr2R_10_8540001 chr2R_8540001 RAL-714 471 chr2R 8566030 8566066 chr2R 8566982 8567012 1360 5 948 2.0 0.0 1.0 2.5 982 chr2R 8566030 5` UTR Cyp6a14 - chr2R 8566521 5` UTR Cyp6a14 - chr2R 8567012 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-714 472 chr2R 8607503 8607532 chr2R 8607664 8607693 10 161 2.0 2.5 2.2 3.1 190 chr2R 8607503 intron rgr + chr2R 8607598 intron rgr + chr2R 8607693 intron rgr + chr2R_10_8605001 chr2R_8605001 RAL-714 473 chr2R 8656108 8656135 chr2R 8656239 8656263 10 130 4.0 3.0 3.5 2.2 155 chr2R 8656108 intron ptc + chr2R 8656186 intron ptc + chr2R 8656263 intron ptc + chr2R_10_8655001 chr2R_8655001 RAL-714 474 chr2R 8658239 8658263 chr2R 8658312 8658337 7 72 1.0 1.5 1.2 3.2 98 chr2R 8658239 intron ptc + chr2R 8658288 intron ptc + chr2R 8658337 intron ptc + chr2R_7_8655001 chr2R_8655001 RAL-714 475 chr2R 8722766 8722793 chr2R 8723006 8723028 pogo 6 239 2.5 2.0 2.2 1.9 262 chr2R 8722766 intron CG14767 - chr2R 8722897 intron CG14767 - chr2R 8723028 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-714 476 chr2R 8777931 8777943 chr2R 8784135 8784146 diver 5 6203 1.0 2.0 1.5 2.0 6215 chr2R 8777931 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784146 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-714 477 chr2R 8850629 8850660 chr2R 8850984 8851015 11 354 0.0 3.0 1.5 4.4 386 chr2R 8850629 intron sns + chr2R 8850822 intron sns + chr2R 8851015 intron sns + chr2R_11_8850001 chr2R_8850001 RAL-714 478 chr2R 9010906 9010936 chr2R 9011116 9011146 8 210 3.0 1.0 2.0 2.7 240 chr2R 9010906 intron CG8172 - chr2R 9011026 intron CG8172 - chr2R 9011146 intron CG8172 - chr2R_8_9010001 chr2R_9010001 RAL-714 479 chr2R 9110148 9110159 chr2R 9110237 9110247 4 88 1.5 1.5 1.5 1.6 99 chr2R 9110148 intergenic Pmm45A - chr2R 9110198 intergenic Pmm45A - chr2R 9110247 intergenic not near genes chr2R_4_9110001 chr2R_9110001 RAL-714 480 chr2R 9136779 9136783 chr2R 9136827 9136843 5 62 0.0 2.0 1.0 2.5 64 chr2R 9136779 intron alc - chr2R 9136811 intron alc - chr2R 9136843 intron alc - chr2R_5_9135001 chr2R_9135001 RAL-714 481 chr2R 9151306 9151335 chr2R 9157776 9157805 Burdock 9 6470 1.5 3.0 2.2 2.8 6499 chr2R 9151306 3` UTR CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_9_9150001 chr2R_9150001 RAL-714 482 chr2R 9212692 9212724 chr2R 9213177 9213210 roo 18 485 5.0 4.0 4.5 3.3 518 chr2R 9212692 intergenic CR45309 + chr2R 9212951 intergenic CR45309 + chr2R 9213210 5` UTR CR45309 + chr2R_18_9210001 chr2R_9210001 RAL-714 483 chr2R 9230224 9230235 chr2R 9230304 9230315 5 80 6.5 3.0 4.8 0.9 91 chr2R 9230224 intron hig - chr2R 9230270 intron hig - chr2R 9230315 exon hig - chr2R_5_9230001 chr2R_9230001 RAL-714 484 chr2R 9236604 9236622 chr2R 9236691 9236709 5 87 0.5 1.0 0.8 2.8 105 chr2R 9236604 intron hig - chr2R 9236656 intron hig - chr2R 9236709 intron hig - chr2R_5_9235001 chr2R_9235001 RAL-714 485 chr2R 9279008 9279039 chr2R 9279110 9279140 5 102 1.0 1.0 1.0 2.5 132 chr2R 9279008 intron Pkn - chr2R 9279074 intron Pkn - chr2R 9279140 intron Pkn - chr2R_5_9275001 chr2R_9275001 RAL-714 486 chr2R 9285091 9285115 chr2R 9285240 9285264 8 149 2.5 0.5 1.5 3.2 173 chr2R 9285091 5` UTR,5` UTR Pkn -,CR45132 + chr2R 9285178 5` UTR CR45132 + chr2R 9285264 intron CR45132 + chr2R_8_9285001 chr2R_9285001 RAL-714 487 chr2R 9368140 9368154 chr2R 9368216 9368223 5 74 3.0 0.0 1.5 2.0 83 chr2R 9368140 intron CG13954 - chr2R 9368182 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-714 488 chr2R 9461245 9461259 chr2R 9461330 9461348 4 88 3.0 7.5 5.2 0.6 103 chr2R 9461245 intron Camta + chr2R 9461296 intron Camta + chr2R 9461348 intron Camta + chr2R_4_9460001 chr2R_9460001 RAL-714 489 chr2R 9479573 9479607 chr2R 9479653 9479687 9 80 3.0 3.5 3.2 2.1 114 chr2R 9479573 intergenic not near genes chr2R 9479630 intergenic not near genes chr2R 9479687 intergenic not near genes chr2R_9_9475001 chr2R_9475001 RAL-714 490 chr2R 9510666 9510697 chr2R 9510782 9510812 14 115 1.5 0.0 0.8 7.8 146 chr2R 9510666 intron brp + chr2R 9510739 intron brp + chr2R 9510812 intron brp + chr2R_14_9510001 chr2R_9510001 RAL-714 491 chr2R 9529849 9529884 chr2R 9529936 9529971 24 87 3.5 4.0 3.8 5.0 122 chr2R 9529849 intron brp + chr2R 9529910 intron brp + chr2R 9529971 intron brp + chr2R_24_9525001 chr2R_9525001 RAL-714 492 chr2R 9535608 9535638 chr2R 9535751 9535781 18 143 5.0 3.5 4.2 3.5 173 chr2R 9535608 intron brp + chr2R 9535694 intron brp + chr2R 9535781 intron brp + chr2R_18_9535001 chr2R_9535001 RAL-714 493 chr2R 9561826 9561849 chr2R 9561913 9561937 8 88 1.0 1.0 1.0 4.0 111 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561937 3` UTR,intron CR45281 -,CG1809 + chr2R_8_9560001 chr2R_9560001 RAL-714 494 chr2R 9653258 9653281 chr2R 9653342 9653365 7 84 3.0 0.0 1.5 2.8 107 chr2R 9653258 intron Mmp2 - chr2R 9653312 intron Mmp2 - chr2R 9653365 intron Mmp2 - chr2R_7_9650001 chr2R_9650001 RAL-714 495 chr2R 9789102 9789130 chr2R 9789192 9789220 7 90 0.0 3.0 1.5 2.8 118 chr2R 9789102 intron,5` UTR CG1688 -,CR44208 + chr2R 9789161 intron,5` UTR CG1688 -,CR44208 + chr2R 9789220 intron,5` UTR CG1688 -,CR44208 + chr2R_7_9785001 chr2R_9785001 RAL-714 496 chr2R 9807457 9807463 chr2R 9807601 9807606 6 144 0.0 6.0 3.0 1.5 149 chr2R 9807457 intergenic not near genes chr2R 9807532 intergenic not near genes chr2R 9807606 intergenic not near genes chr2R_6_9805001 chr2R_9805001 RAL-714 497 chr2R 9845540 9845567 chr2R 9845648 9845673 4 106 18.0 18.0 18.0 0.2 133 chr2R 9845540 3` UTR Orc6 - chr2R 9845606 exon Orc6 - chr2R 9845673 exon Orc6 - chr2R_4_9845001 chr2R_9845001 RAL-714 498 chr2R 9856732 9856750 chr2R 9856809 9856827 6 77 2.5 3.5 3.0 1.5 95 chr2R 9856732 intron CG1516 - chr2R 9856780 intron CG1516 - chr2R 9856827 intron CG1516 - chr2R_6_9855001 chr2R_9855001 RAL-714 499 chr2R 9945435 9945469 chr2R 9945631 9945665 BS 11 195 4.5 1.5 3.0 2.8 230 chr2R 9945435 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_11_9945001 chr2R_9945001 RAL-714 500 chr2R 10005561 10005585 chr2R 10005657 10005682 7 96 1.5 2.5 2.0 2.3 121 chr2R 10005561 intron Pka-R2 - chr2R 10005622 intron Pka-R2 - chr2R 10005682 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-714 501 chr2R 10005846 10005884 chr2R 10007011 10007032 1360 15 1159 5.0 4.5 4.8 2.6 1186 chr2R 10005846 intron Pka-R2 - chr2R 10006439 intron Pka-R2 - chr2R 10007032 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-714 502 chr2R 10086929 10086931 chr2R 10087016 10087028 4 94 3.0 5.0 4.0 0.8 99 chr2R 10086929 intron,exon CG2269 +,sut4 - chr2R 10086978 intron,5` UTR CG2269 +,sut4 - chr2R 10087028 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-714 503 chr2R 10132208 10132220 chr2R 10132286 10132300 5 80 2.0 8.0 5.0 0.8 92 chr2R 10132208 intron gem + chr2R 10132254 intron gem + chr2R 10132300 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-714 504 chr2R 10155857 10155879 chr2R 10155951 10155973 4 94 2.0 2.0 2.0 1.3 116 chr2R 10155857 intron KCNQ - chr2R 10155915 intron,3` UTR KCNQ -,mlt - chr2R 10155973 intron,3` UTR KCNQ -,mlt - chr2R_4_10155001 chr2R_10155001 RAL-714 505 chr2R 10161289 10161323 chr2R 10161412 10161446 4 123 2.5 2.0 2.2 1.2 157 chr2R 10161289 intron KCNQ - chr2R 10161368 intron KCNQ - chr2R 10161446 intron KCNQ - chr2R_4_10160001 chr2R_10160001 RAL-714 506 chr2R 10172636 10172665 chr2R 10172748 10172777 6 111 1.5 0.0 0.8 3.3 141 chr2R 10172636 intron KCNQ - chr2R 10172706 intron KCNQ - chr2R 10172777 intron KCNQ - chr2R_6_10170001 chr2R_10170001 RAL-714 507 chr2R 10176885 10176907 chr2R 10186049 10186074 roo 5 9166 3.5 0.0 1.8 1.8 9189 chr2R 10176885 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186074 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-714 508 chr2R 10190442 10190467 chr2R 10190526 10190551 9 79 0.5 5.0 2.8 2.4 109 chr2R 10190442 intron KCNQ - chr2R 10190496 intron KCNQ - chr2R 10190551 intron KCNQ - chr2R_9_10190001 chr2R_10190001 RAL-714 509 chr2R 10203645 10203661 chr2R 10203730 10203746 4 85 4.5 1.5 3.0 1.0 101 chr2R 10203645 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203746 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-714 510 chr2R 10216192 10216219 chr2R 10216270 10216296 15 77 1.5 3.0 2.2 4.7 104 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216296 intron,intron CG12912 -,Hr46 - chr2R_15_10215001 chr2R_10215001 RAL-714 511 chr2R 10225736 10225750 chr2R 10225818 10225832 6 82 0.0 1.5 0.8 3.3 96 chr2R 10225736 intron,intron CG12912 -,Hr46 - chr2R 10225784 intron,intron CG12912 -,Hr46 - chr2R 10225832 intron,intron CG12912 -,Hr46 - chr2R_6_10225001 chr2R_10225001 RAL-714 512 chr2R 10232944 10232951 chr2R 10233023 10233034 4 82 10.5 9.0 9.8 0.4 90 chr2R 10232944 3` UTR,intron CG12912 -,Hr46 - chr2R 10232989 3` UTR,intron CG12912 -,Hr46 - chr2R 10233034 3` UTR,intron CG12912 -,Hr46 - chr2R_4_10230001 chr2R_10230001 RAL-714 513 chr2R 10232953 10232956 chr2R 10233015 10233039 4 75 8.0 7.5 7.8 0.5 86 chr2R 10232953 3` UTR,intron CG12912 -,Hr46 - chr2R 10232996 3` UTR,intron CG12912 -,Hr46 - chr2R 10233039 3` UTR,intron CG12912 -,Hr46 - chr2R_4_10230001 chr2R_10230001 RAL-714 514 chr2R 10294974 10295000 chr2R 10295085 10295107 12 110 3.5 2.5 3.0 3.0 133 chr2R 10294974 intron CAP + chr2R 10295040 intron CAP + chr2R 10295107 intron CAP + chr2R_12_10295001 chr2R_10295001 RAL-714 515 chr2R 10313234 10313244 chr2R 10313665 10313675 4 430 4.0 3.5 3.8 0.8 441 chr2R 10313234 intergenic not near genes chr2R 10313454 intergenic Ndg + chr2R 10313675 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-714 516 chr2R 10409071 10409084 chr2R 10409147 10409160 7 76 1.0 4.0 2.5 2.0 89 chr2R 10409071 intron CG42732 - chr2R 10409116 intron CG42732 - chr2R 10409160 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-714 517 chr2R 10429021 10429051 chr2R 10429096 10429128 5 77 2.0 0.5 1.2 2.3 107 chr2R 10429021 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429128 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-714 518 chr2R 10449200 10449214 chr2R 10449508 10449521 5 308 3.5 4.5 4.0 1.0 321 chr2R 10449200 intron Galphao + chr2R 10449360 intron,3` UTR Galphao +,Cyp49a1 - chr2R 10449521 intron,3` UTR Galphao +,Cyp49a1 - chr2R_5_10445001 chr2R_10445001 RAL-714 519 chr2R 10454106 10454130 chr2R 10454183 10454207 11 77 0.5 2.5 1.5 4.4 101 chr2R 10454106 intron,intron Galphao +,Cyp49a1 - chr2R 10454156 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_11_10450001 chr2R_10450001 RAL-714 520 chr2R 10469023 10469055 chr2R 10469149 10469181 8 126 0.0 5.0 2.5 2.3 158 chr2R 10469023 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_8_10465001 chr2R_10465001 RAL-714 521 chr2R 10563258 10563557 chr2R 10563356 10563637 5 94 5.0 2.0 3.5 1.1 379 chr2R 10563258 intron psq + chr2R 10563448 intron psq + chr2R 10563637 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-714 522 chr2R 10563559 10563578 chr2R 10563639 10563658 5 80 1.5 5.0 3.2 1.2 99 chr2R 10563559 intron psq + chr2R 10563608 intron psq + chr2R 10563658 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-714 523 chr2R 10622353 10622385 chr2R 10637117 10637138 mdg1 4 14759 0.5 0.5 0.5 2.7 14785 chr2R 10622353 intron CG11883 + chr2R 10629746 intron CG11883 + chr2R 10637138 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-714 524 chr2R 10644061 10644091 chr2R 10644139 10644169 5 78 1.5 2.5 2.0 1.7 108 chr2R 10644061 intron Git - chr2R 10644115 intron Git - chr2R 10644169 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-714 525 chr2R 10671252 10671286 chr2R 10671329 10671348 10 76 0.5 0.0 0.2 8.3 96 chr2R 10671252 intergenic not near genes chr2R 10671300 intergenic not near genes chr2R 10671348 intergenic not near genes chr2R_10_10670001 chr2R_10670001 RAL-714 526 chr2R 10748727 10748758 chr2R 10748807 10748837 10 80 3.0 4.0 3.5 2.2 110 chr2R 10748727 intron CG33144 - chr2R 10748782 intron CG33144 - chr2R 10748837 intron CG33144 - chr2R_10_10745001 chr2R_10745001 RAL-714 527 chr2R 10775208 10775235 chr2R 10775285 10775314 6 79 2.5 1.0 1.8 2.1 106 chr2R 10775208 intron CG33144 - chr2R 10775261 intron CG33144 - chr2R 10775314 intron CG33144 - chr2R_6_10775001 chr2R_10775001 RAL-714 528 chr2R 10790140 10790173 chr2R 10790228 10790240 7 85 3.0 3.0 3.0 1.8 100 chr2R 10790140 intron CG33144 - chr2R 10790190 intron CG33144 - chr2R 10790240 intron CG33144 - chr2R_7_10790001 chr2R_10790001 RAL-714 529 chr2R 10796717 10796731 chr2R 10796815 10796819 7 96 3.5 1.5 2.5 2.0 102 chr2R 10796717 intron CG33144 - chr2R 10796768 intron CG33144 - chr2R 10796819 intron CG33144 - chr2R_7_10795001 chr2R_10795001 RAL-714 530 chr2R 10926609 10926628 chr2R 10926715 10926736 7 105 2.0 3.5 2.8 1.8 127 chr2R 10926609 intergenic not near genes chr2R 10926672 intergenic not near genes chr2R 10926736 intergenic not near genes chr2R_7_10925001 chr2R_10925001 RAL-714 531 chr2R 10979658 10979686 chr2R 10980126 10980156 297 6 467 2.5 0.5 1.5 2.4 498 chr2R 10979658 intergenic not near genes chr2R 10979907 intergenic not near genes chr2R 10980156 intergenic not near genes chr2R_6_10975001 chr2R_10975001 RAL-714 532 chr2R 10985097 10985120 chr2R 10985181 10985204 6 84 2.0 4.5 3.2 1.4 107 chr2R 10985097 intron luna - chr2R 10985150 intron luna - chr2R 10985204 intron luna - chr2R_6_10985001 chr2R_10985001 RAL-714 533 chr2R 11009820 11009841 chr2R 11018993 11019015 roo 10 9173 2.5 1.0 1.8 3.6 9195 chr2R 11009820 intron luna - chr2R 11014418 intron luna - chr2R 11019015 intron luna - chr2R_10_11010001 chr2R_11010001 RAL-714 534 chr2R 11019876 11019910 chr2R 11024942 11024975 jockey 7 5064 4.0 2.5 3.2 1.7 5099 chr2R 11019876 intron luna - chr2R 11022426 intron luna - chr2R 11024975 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-714 535 chr2R 11133401 11133426 chr2R 11133625 11133640 5 218 4.5 0.0 2.2 1.6 239 chr2R 11133401 intergenic not near genes chr2R 11133520 intergenic not near genes chr2R 11133640 intergenic not near genes chr2R_5_11130001 chr2R_11130001 RAL-714 536 chr2R 11171532 11171548 chr2R 11171689 11171705 4 157 3.0 1.5 2.2 1.2 173 chr2R 11171532 intron,intron CG13229 -,shn + chr2R 11171618 intron,intron CG13229 -,shn + chr2R 11171705 intron,intron CG13229 -,shn + chr2R_4_11170001 chr2R_11170001 RAL-714 537 chr2R 11207821 11207847 chr2R 11208014 11208040 BS 5 193 5.5 3.5 4.5 0.9 219 chr2R 11207821 intron shn + chr2R 11207930 intron shn + chr2R 11208040 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-714 538 chr2R 11256282 11256295 chr2R 11256472 11256484 4 190 2.0 0.5 1.2 1.8 202 chr2R 11256282 intergenic CG13223 +,Cpr47Eb + chr2R 11256383 intergenic CG13223 +,Cpr47Eb + chr2R 11256484 intergenic CG13223 + chr2R_4_11255001 chr2R_11255001 RAL-714 539 chr2R 11297620 11297651 chr2R 11301941 11301971 flea 8 4321 4.0 4.0 4.0 1.6 4351 chr2R 11297620 intergenic CG42336 - chr2R 11299796 intergenic not near genes chr2R 11301971 5` UTR CG7741 + chr2R_8_11295001 chr2R_11295001 RAL-714 540 chr2R 11472649 11472677 chr2R 11473846 11473874 pogo 11 1197 3.0 3.5 3.2 2.6 1225 chr2R 11472649 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_11_11470001 chr2R_11470001 RAL-714 541 chr2R 11494600 11494624 chr2R 11494689 11494712 9 89 2.5 5.5 4.0 1.8 112 chr2R 11494600 intron inv + chr2R 11494656 intron inv + chr2R 11494712 intron inv + chr2R_9_11490001 chr2R_11490001 RAL-714 542 chr2R 11537214 11537243 chr2R 11537291 11537318 9 77 1.5 3.0 2.2 2.8 104 chr2R 11537214 intergenic not near genes chr2R 11537266 intergenic not near genes chr2R 11537318 intergenic not near genes chr2R_9_11535001 chr2R_11535001 RAL-714 543 chr2R 11555493 11555525 chr2R 11555609 11555641 4 115 0.0 1.0 0.5 2.7 148 chr2R 11555493 intergenic not near genes chr2R 11555567 intergenic not near genes chr2R 11555641 intergenic not near genes chr2R_4_11555001 chr2R_11555001 RAL-714 544 chr2R 11672682 11672685 chr2R 11676124 11676127 4 3442 13.0 9.0 11.0 0.3 3445 chr2R 11672682 intron,intron Roc2 -,Tret1-1 + chr2R 11674404 intron,exon Roc2 -,Tret1-1 + chr2R 11676127 intron,exon Roc2 -,Tret1-2 + chr2R_4_11670001 chr2R_11670001 RAL-714 545 chr2R 11710828 11710855 chr2R 11711557 11711585 6 730 1.5 2.5 2.0 2.0 757 chr2R 11710828 intergenic not near genes chr2R 11711206 intergenic not near genes chr2R 11711585 intergenic not near genes chr2R_6_11710001 chr2R_11710001 RAL-714 546 chr2R 11822984 11822996 chr2R 11823061 11823073 5 76 0.0 0.5 0.2 4.2 89 chr2R 11822984 intergenic not near genes chr2R 11823028 intergenic not near genes chr2R 11823073 intergenic not near genes chr2R_5_11820001 chr2R_11820001 RAL-714 547 chr2R 11861993 11862005 chr2R 11862078 11862090 4 85 6.0 1.0 3.5 0.9 97 chr2R 11861993 3` UTR CG34230 + chr2R 11862042 intergenic CG34230 +,TwdlBeta - chr2R 11862090 intergenic CG34230 +,TwdlBeta - chr2R_4_11860001 chr2R_11860001 RAL-714 548 chr2R 11951350 11951370 chr2R 11951427 11951447 4 77 1.0 1.5 1.2 1.8 97 chr2R 11951350 intron CG13188 + chr2R 11951398 intron CG13188 + chr2R 11951447 intron CG13188 + chr2R_4_11950001 chr2R_11950001 RAL-714 549 chr2R 8518777 8518804 chr2R 12066171 12066204 9 3547395 8.5 12.5 10.5 0.8 3547427 chr2R 8518777 intron mtt - chr2R 10292490 intron CAP + chr2R 12066204 intron CG8888 - chr2R_9_10290001 chr2R_10290001 RAL-714 550 chr2R 12120404 12120433 chr2R 12120485 12120515 11 81 3.5 1.0 2.2 3.4 111 chr2R 12120404 intergenic not near genes chr2R 12120460 intergenic not near genes chr2R 12120515 intergenic not near genes chr2R_11_12120001 chr2R_12120001 RAL-714 551 chr2R 12124834 12124859 chr2R 12124918 12124943 5 84 2.0 1.0 1.5 2.0 109 chr2R 12124834 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124943 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-714 552 chr2R 12186010 12186033 chr2R 12186105 12186128 7 95 1.0 4.0 2.5 2.0 118 chr2R 12186010 intron Cyp6g1 + chr2R 12186069 intron Cyp6g1 + chr2R 12186128 intron Cyp6g1 + chr2R_7_12185001 chr2R_12185001 RAL-714 553 chr2R 12187471 12187508 chr2R 12190088 12190124 53 2619 148.5 87.5 118.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_53_12185001 chr2R_12185001 RAL-714 554 chr2R 12217578 12217593 chr2R 12217659 12217674 5 81 3.5 3.5 3.5 1.1 96 chr2R 12217578 intergenic not near genes chr2R 12217626 intergenic not near genes chr2R 12217674 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-714 555 chr2R 12272322 12272356 chr2R 12272405 12272439 9 83 1.5 1.5 1.5 3.6 117 chr2R 12272322 intron Cam + chr2R 12272380 intron Cam + chr2R 12272439 intron Cam + chr2R_9_12270001 chr2R_12270001 RAL-714 556 chr2R 12334878 12334902 chr2R 12334956 12334971 4 76 3.0 1.5 2.2 1.2 93 chr2R 12334878 intergenic CG8490 + chr2R 12334924 intergenic CG8490 + chr2R 12334971 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-714 557 chr2R 12417461 12417483 chr2R 12417541 12417559 9 79 2.5 7.0 4.8 1.6 98 chr2R 12417461 exon CG13157 + chr2R 12417510 exon CG13157 + chr2R 12417559 exon CG13157 + chr2R_9_12415001 chr2R_12415001 RAL-714 558 chr2R 12481141 12481166 chr2R 12482942 12482958 roo 5 1794 2.0 4.0 3.0 1.2 1817 chr2R 12481141 exon Dh44-R2 + chr2R 12482050 intron Dh44-R2 + chr2R 12482958 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-714 559 chr2R 12501687 12501717 chr2R 12503849 12503878 Rt1c 5 2160 3.0 5.0 4.0 1.0 2191 chr2R 12501687 intron fdl - chr2R 12502782 intron fdl - chr2R 12503878 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-714 560 chr2R 12504147 12504179 chr2R 12504222 12504256 15 76 0.5 2.5 1.5 6.0 109 chr2R 12504147 intron fdl - chr2R 12504202 intron fdl - chr2R 12504256 intron fdl - chr2R_15_12500001 chr2R_12500001 RAL-714 561 chr2R 12527281 12527299 chr2R 12527487 12527508 7 208 1.5 4.0 2.8 1.8 227 chr2R 12527281 intergenic not near genes chr2R 12527394 intergenic not near genes chr2R 12527508 intergenic not near genes chr2R_7_12525001 chr2R_12525001 RAL-714 562 chr2R 12540475 12540494 chr2R 12540557 12540577 5 81 4.0 3.5 3.8 1.0 102 chr2R 12540475 intron fra + chr2R 12540526 intron fra + chr2R 12540577 intron fra + chr2R_5_12540001 chr2R_12540001 RAL-714 563 chr2R 12565565 12565596 chr2R 12565943 12565944 5 372 0.0 1.5 0.8 2.8 379 chr2R 12565565 intergenic not near genes chr2R 12565754 intergenic Cyp301a1 + chr2R 12565944 intergenic Cyp301a1 + chr2R_5_12565001 chr2R_12565001 RAL-714 564 chr2R 12602821 12602837 chr2R 12602904 12602921 4 82 0.0 3.0 1.5 1.6 100 chr2R 12602821 intron Amph + chr2R 12602871 intron Amph + chr2R 12602921 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-714 565 chr2R 12700814 12700845 chr2R 12700905 12700938 6 90 5.0 3.0 4.0 1.2 124 chr2R 12700814 3` UTR wuc + chr2R 12700876 intergenic wuc + chr2R 12700938 intergenic wuc + chr2R_6_12700001 chr2R_12700001 RAL-714 566 chr2R 12707517 12707545 chr2R 12715883 12715911 roo 6 8366 1.5 0.5 1.0 3.0 8394 chr2R 12707517 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715911 intron CG42663 + chr2R_6_12710001 chr2R_12710001 RAL-714 567 chr2R 12819452 12819479 chr2R 12824521 12824548 jockey 4 5069 2.0 2.5 2.2 1.2 5096 chr2R 12819452 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824548 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-714 568 chr2R 12897460 12897482 chr2R 12897551 12897573 5 91 3.5 1.0 2.2 1.6 113 chr2R 12897460 intron vg + chr2R 12897516 intron vg + chr2R 12897573 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-714 569 chr2R 13048082 13048113 chr2R 13048163 13048195 9 81 1.0 6.5 3.8 1.9 113 chr2R 13048082 intergenic not near genes chr2R 13048138 intergenic not near genes chr2R 13048195 intergenic not near genes chr2R_9_13045001 chr2R_13045001 RAL-714 570 chr2R 13103780 13103811 chr2R 13104553 13104584 17 772 1.0 2.5 1.8 6.1 804 chr2R 13103780 intergenic CG44341 + chr2R 13104182 exon CG44341 + chr2R 13104584 exon CG44341 + chr2R_17_13100001 chr2R_13100001 RAL-714 571 chr2R 13136845 13136859 chr2R 13141640 13141656 Doc 7 4797 3.5 5.0 4.2 1.3 4811 chr2R 13136845 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141656 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-714 572 chr2R 13167426 13167453 chr2R 13167520 13167547 8 94 2.5 0.0 1.2 3.6 121 chr2R 13167426 intron GLaz - chr2R 13167486 intron GLaz - chr2R 13167547 intron GLaz - chr2R_8_13165001 chr2R_13165001 RAL-714 573 chr2R 13218309 13218398 chr2R 13218392 13218475 5 81 0.0 0.0 0.0 5.0 166 chr2R 13218309 intron CG4630 - chr2R 13218392 intron CG4630 - chr2R 13218475 intron CG4630 - chr2R_5_13215001 chr2R_13215001 RAL-714 574 chr2R 13305501 13305506 chr2R 13305581 13305582 4 80 8.5 5.0 6.8 0.5 81 chr2R 13305501 intergenic not near genes chr2R 13305542 intergenic not near genes chr2R 13305582 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-714 575 chr2R 13547081 13547108 chr2R 13547276 13547303 9 195 3.0 0.5 1.8 3.2 222 chr2R 13547081 intron CG6145 - chr2R 13547192 intron CG6145 - chr2R 13547303 intron CG6145 - chr2R_9_13545001 chr2R_13545001 RAL-714 576 chr2R 13566266 13566290 chr2R 13566346 13566370 5 80 2.5 0.0 1.2 2.3 104 chr2R 13566266 intergenic not near genes chr2R 13566318 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-714 577 chr2R 13577446 13577457 chr2R 13577513 13577534 4 74 1.0 2.0 1.5 1.6 88 chr2R 13577446 5` UTR CR44365 + chr2R 13577490 5` UTR CR44365 + chr2R 13577534 5` UTR CR44365 + chr2R_4_13575001 chr2R_13575001 RAL-714 578 chr2R 13580512 13580527 chr2R 13580843 13580877 jockey 5 346 0.0 2.5 1.2 2.3 365 chr2R 13580512 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580877 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-714 579 chr2R 13648497 13648516 chr2R 13648683 13648702 12 186 3.0 4.0 3.5 2.7 205 chr2R 13648497 intron fas + chr2R 13648600 intron fas + chr2R 13648702 intron fas + chr2R_12_13645001 chr2R_13645001 RAL-714 580 chr2R 13728133 13728154 chr2R 13735790 13735811 opus 7 7657 5.5 5.0 5.2 1.1 7678 chr2R 13728133 intron fas + chr2R 13731972 intron fas + chr2R 13735811 intron fas + chr2R_7_13730001 chr2R_13730001 RAL-714 581 chr2R 13768991 13769008 chr2R 13769090 13769107 9 99 1.0 4.0 2.5 2.6 116 chr2R 13768991 intergenic not near genes chr2R 13769049 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-714 582 chr2R 13786684 13786692 chr2R 13786759 13786777 7 83 3.5 4.5 4.0 1.4 93 chr2R 13786684 intron Cpr50Ca + chr2R 13786730 intron Cpr50Ca + chr2R 13786777 intron Cpr50Ca + chr2R_7_13785001 chr2R_13785001 RAL-714 583 chr2R 13793148 13793161 chr2R 13793224 13793237 5 75 2.5 2.0 2.2 1.6 89 chr2R 13793148 intergenic not near genes chr2R 13793192 intergenic not near genes chr2R 13793237 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-714 584 chr2R 13888765 13888786 chr2R 13888842 13888863 4 77 1.5 0.0 0.8 2.2 98 chr2R 13888765 intron shot - chr2R 13888814 intron shot - chr2R 13888863 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-714 585 chr2R 13905614 13905636 chr2R 13907593 13907615 Rt1a 9 1980 2.5 4.5 3.5 2.0 2001 chr2R 13905614 intron shot - chr2R 13906614 intron shot - chr2R 13907615 intron shot - chr2R_9_13905001 chr2R_13905001 RAL-714 586 chr2R 13909440 13909448 chr2R 13909620 13909627 4 180 1.5 1.5 1.5 1.6 187 chr2R 13909440 intron shot - chr2R 13909534 intron shot - chr2R 13909627 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-714 587 chr2R 14018165 14018185 chr2R 14018249 14018269 9 84 1.0 2.5 1.8 3.2 104 chr2R 14018165 intron mam + chr2R 14018217 intron mam + chr2R 14018269 intron mam + chr2R_9_14015001 chr2R_14015001 RAL-714 588 chr2R 14277591 14277610 chr2R 14277673 14277691 4 82 1.0 6.5 3.8 0.8 100 chr2R 14277591 5` UTR Ih + chr2R 14277641 5` UTR Ih + chr2R 14277691 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-714 589 chr2R 14467299 14467317 chr2R 14476451 14476463 roo 9 9150 2.5 6.0 4.2 1.7 9164 chr2R 14467299 intergenic not near genes chr2R 14471881 intergenic not near genes chr2R 14476463 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-714 590 chr2R 14565558 14565593 chr2R 14565633 14565670 8 76 2.0 3.0 2.5 2.3 112 chr2R 14565558 intron ttv + chr2R 14565614 intron ttv + chr2R 14565670 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-714 591 chr2R 14634281 14634313 chr2R 14634369 14634401 8 88 1.5 3.5 2.5 2.3 120 chr2R 14634281 intergenic not near genes chr2R 14634341 intergenic not near genes chr2R 14634401 intergenic not near genes chr2R_8_14630001 chr2R_14630001 RAL-714 592 chr2R 14799865 14799897 chr2R 14799940 14799973 8 75 1.5 2.5 2.0 2.7 108 chr2R 14799865 intron kn - chr2R 14799919 intron kn - chr2R 14799973 intron kn - chr2R_8_14795001 chr2R_14795001 RAL-714 593 chr2R 14820898 14820933 chr2R 14820985 14821020 16 87 3.0 3.0 3.0 4.0 122 chr2R 14820898 intergenic not near genes chr2R 14820959 intergenic not near genes chr2R 14821020 intergenic not near genes chr2R_16_14820001 chr2R_14820001 RAL-714 594 chr2R 14889220 14889238 chr2R 14897826 14897845 Max-element 10 8608 5.0 0.0 2.5 2.9 8625 chr2R 14889220 intergenic Cyp6a8 - chr2R 14893532 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_10_14890001 chr2R_14890001 RAL-714 595 chr2R 14917658 14917682 chr2R 14917841 14917866 7 183 4.0 2.0 3.0 1.8 208 chr2R 14917658 intron CG10249 - chr2R 14917762 intron CG10249 - chr2R 14917866 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-714 596 chr2R 14922143 14922171 chr2R 14922217 14922247 15 75 4.0 2.0 3.0 3.8 104 chr2R 14922143 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_15_14920001 chr2R_14920001 RAL-714 597 chr2R 14954748 14954778 chr2R 14954824 14954854 7 76 0.0 1.5 0.8 3.9 106 chr2R 14954748 intron aPKC - chr2R 14954801 intron aPKC - chr2R 14954854 intron aPKC - chr2R_7_14950001 chr2R_14950001 RAL-714 598 chr2R 14955672 14955699 chr2R 14955761 14955788 6 86 1.5 0.0 0.8 3.3 116 chr2R 14955672 intron aPKC - chr2R 14955730 intron aPKC - chr2R 14955788 intron aPKC - chr2R_6_14955001 chr2R_14955001 RAL-714 599 chr2R 14968445 14968468 chr2R 14968524 14968550 10 80 0.5 4.0 2.2 3.1 105 chr2R 14968445 intron ckn + chr2R 14968498 intron ckn + chr2R 14968550 intron ckn + chr2R_10_14965001 chr2R_14965001 RAL-714 600 chr2R 14987383 14987414 chr2R 14987527 14987558 6 144 1.0 2.5 1.8 2.1 175 chr2R 14987383 intron pcs + chr2R 14987470 intron pcs + chr2R 14987558 intron pcs + chr2R_6_14985001 chr2R_14985001 RAL-714 601 chr2R 15004728 15004760 chr2R 15005057 15005089 jockey 8 329 0.0 1.5 0.8 4.4 361 chr2R 15004728 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-714 602 chr2R 15015460 15015487 chr2R 15022884 15022911 mdg1 7 7424 3.0 1.5 2.2 2.2 7451 chr2R 15015460 intron hbs + chr2R 15019186 intron hbs + chr2R 15022911 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-714 603 chr2R 15065622 15065650 chr2R 15065700 15065728 12 76 2.0 1.5 1.8 4.3 106 chr2R 15065622 intergenic not near genes chr2R 15065675 intergenic not near genes chr2R 15065728 intergenic not near genes chr2R_12_15065001 chr2R_15065001 RAL-714 604 chr2R 15084981 15085002 chr2R 15092030 15092051 297 4 7049 4.5 2.5 3.5 0.9 7070 chr2R 15084981 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092051 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-714 605 chr2R 15137970 15138002 chr2R 15138050 15138084 4 80 2.0 0.0 1.0 2.0 114 chr2R 15137970 intron chn + chr2R 15138027 intron chn + chr2R 15138084 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-714 606 chr2R 15330205 15330238 chr2R 15330339 15330372 8 134 2.0 1.5 1.8 2.9 167 chr2R 15330205 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330372 intergenic CR44371 - chr2R_8_15330001 chr2R_15330001 RAL-714 607 chr2R 15375351 15375359 chr2R 15376166 15376176 4 816 0.0 3.5 1.8 1.4 825 chr2R 15375351 intergenic not near genes chr2R 15375764 intergenic not near genes chr2R 15376176 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-714 608 chr2R 15428464 15428485 chr2R 15428548 15428570 6 84 3.5 3.5 3.5 1.3 106 chr2R 15428464 intron CG43729 + chr2R 15428517 intron CG43729 + chr2R 15428570 intron CG43729 + chr2R_6_15425001 chr2R_15425001 RAL-714 609 chr2R 15930401 15930432 chr2R 15930488 15930520 11 88 3.5 2.5 3.0 2.8 119 chr2R 15930401 intron bdg - chr2R 15930460 intron bdg - chr2R 15930520 intron bdg - chr2R_11_15930001 chr2R_15930001 RAL-714 610 chr2R 15941670 15941685 chr2R 15941755 15941769 5 84 3.5 7.0 5.2 0.8 99 chr2R 15941670 intergenic CG8299 - chr2R 15941720 intergenic CG8299 - chr2R 15941769 intergenic CG8299 - chr2R_5_15940001 chr2R_15940001 RAL-714 611 chr2R 15987951 15987979 chr2R 15988030 15988058 7 79 3.0 2.0 2.5 2.0 107 chr2R 15987951 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988004 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988058 intron,5` UTR Strn-Mlck -,CR45021 + chr2R_7_15985001 chr2R_15985001 RAL-714 612 chr2R 16489265 16489302 chr2R 16489349 16489386 11 84 2.0 2.0 2.0 3.7 121 chr2R 16489265 intergenic CG33459 + chr2R 16489326 intergenic CG33459 + chr2R 16489386 intergenic CG33459 + chr2R_11_16485001 chr2R_16485001 RAL-714 613 chr2R 16509598 16509628 chr2R 16509680 16509710 6 82 0.5 4.0 2.2 1.9 112 chr2R 16509598 intron Sema-2a + chr2R 16509654 intron Sema-2a + chr2R 16509710 intron Sema-2a + chr2R_6_16505001 chr2R_16505001 RAL-714 614 chr2R 16539639 16539667 chr2R 16544848 16544876 copia 5 5208 2.0 0.5 1.2 2.3 5237 chr2R 16539639 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544876 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-714 615 chr2R 16571873 16571897 chr2R 16571968 16571992 7 95 3.0 0.5 1.8 2.5 119 chr2R 16571873 intergenic CG4927 + chr2R 16571932 intergenic CG4927 + chr2R 16571992 intergenic CG4927 + chr2R_7_16570001 chr2R_16570001 RAL-714 616 chr2R 16702022 16702028 chr2R 16702081 16702115 4 75 1.5 2.5 2.0 1.3 93 chr2R 16702022 intron CG30463 - chr2R 16702068 intron CG30463 - chr2R 16702115 intron CG30463 - chr2R_4_16700001 chr2R_16700001 RAL-714 617 chr2R 16775642 16775669 chr2R 16775906 16775915 8 262 2.0 4.5 3.2 1.9 273 chr2R 16775642 3` UTR Arp53D + chr2R 16775778 intergenic Arp53D + chr2R 16775915 intergenic Arp53D + chr2R_8_16775001 chr2R_16775001 RAL-714 618 chr2R 16787478 16787494 chr2R 16787560 16787576 7 82 3.5 0.0 1.8 2.5 98 chr2R 16787478 intron CG5522 + chr2R 16787527 intron CG5522 + chr2R 16787576 intron CG5522 + chr2R_7_16785001 chr2R_16785001 RAL-714 619 chr2R 16808730 16808764 chr2R 16808879 16808913 8 148 1.5 3.5 2.5 2.3 183 chr2R 16808730 intergenic not near genes chr2R 16808822 intergenic not near genes chr2R 16808913 intergenic not near genes chr2R_8_16805001 chr2R_16805001 RAL-714 620 chr2R 16971514 16971520 chr2R 16971771 16971776 4 256 0.0 3.0 1.5 1.6 262 chr2R 16971514 5` UTR CR44377 + chr2R 16971645 5` UTR CR44377 + chr2R 16971776 intergenic CR44377 + chr2R_4_16970001 chr2R_16970001 RAL-714 621 chr2R 17075309 17075338 chr2R 17075397 17075426 11 88 0.5 5.5 3.0 2.8 117 chr2R 17075309 intron CG30460 - chr2R 17075368 intron CG30460 - chr2R 17075426 intron CG30460 - chr2R_11_17075001 chr2R_17075001 RAL-714 622 chr2R 17099987 17100011 chr2R 17100073 17100079 8 81 1.5 1.0 1.2 3.6 92 chr2R 17099987 intergenic CG30456 + chr2R 17100033 intergenic CG30456 + chr2R 17100079 intergenic CG30456 + chr2R_8_17100001 chr2R_17100001 RAL-714 623 chr2R 17132857 17132866 chr2R 17132957 17132966 4 100 1.0 2.0 1.5 1.6 109 chr2R 17132857 intergenic not near genes chr2R 17132912 intergenic not near genes chr2R 17132966 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 RAL-714 624 chr2R 17147239 17147267 chr2R 17152270 17152298 jockey 9 5031 3.0 1.5 2.2 2.8 5059 chr2R 17147239 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_9_17145001 chr2R_17145001 RAL-714 625 chr2R 17161173 17161204 chr2R 17161258 17161289 7 85 1.0 4.0 2.5 2.0 116 chr2R 17161173 intergenic CG30457 - chr2R 17161231 intergenic CG30457 - chr2R 17161289 intergenic CG30457 - chr2R_7_17160001 chr2R_17160001 RAL-714 626 chr2R 17166620 17166625 chr2R 17166697 17166702 4 77 3.5 2.5 3.0 1.0 82 chr2R 17166620 5` UTR CG10953 - chr2R 17166661 intergenic CG10953 - chr2R 17166702 intergenic CG10953 - chr2R_4_17165001 chr2R_17165001 RAL-714 627 chr2R 17236512 17236540 chr2R 17241713 17241744 copia 8 5203 3.5 3.5 3.5 1.8 5232 chr2R 17236512 intron mbl + chr2R 17239128 intron mbl + chr2R 17241744 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-714 628 chr2R 17389664 17389685 chr2R 17389765 17389786 7 101 1.5 5.0 3.2 1.7 122 chr2R 17389664 intergenic not near genes chr2R 17389725 intergenic not near genes chr2R 17389786 intergenic not near genes chr2R_7_17385001 chr2R_17385001 RAL-714 629 chr2R 17470339 17470347 chr2R 17470423 17470431 4 84 0.5 1.0 0.8 2.2 92 chr2R 17470339 intron qkr54B + chr2R 17470385 intron qkr54B + chr2R 17470431 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-714 630 chr2R 17561600 17561616 chr2R 17561679 17561695 7 79 4.0 4.0 4.0 1.4 95 chr2R 17561600 exon Klp54D + chr2R 17561648 intron Klp54D + chr2R 17561695 intron Klp54D + chr2R_7_17560001 chr2R_17560001 RAL-714 631 chr2R 17652445 17652471 chr2R 17652524 17652551 9 80 5.5 5.0 5.2 1.5 106 chr2R 17652445 intron CCHa1-R - chr2R 17652498 intron CCHa1-R - chr2R 17652551 intron CCHa1-R - chr2R_9_17650001 chr2R_17650001 RAL-714 632 chr2R 17661553 17661578 chr2R 17661633 17661658 9 77 3.5 2.5 3.0 2.2 105 chr2R 17661553 intron CCHa1-R - chr2R 17661606 intron CCHa1-R - chr2R 17661658 intron CCHa1-R - chr2R_9_17660001 chr2R_17660001 RAL-714 633 chr2R 17784030 17784054 chr2R 17784269 17784295 pogo 6 238 0.0 3.0 1.5 2.4 265 chr2R 17784030 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-714 634 chr2R 17876349 17876371 chr2R 17876580 17876601 8 231 2.5 2.5 2.5 2.3 252 chr2R 17876349 intron Elk + chr2R 17876475 intron Elk + chr2R 17876601 intron Elk + chr2R_8_17875001 chr2R_17875001 RAL-714 635 chr2R 17918167 17918191 chr2R 17918242 17918268 8 72 1.5 1.0 1.2 3.6 101 chr2R 17918167 intron Elk + chr2R 17918218 intron Elk + chr2R 17918268 intron Elk + chr2R_8_17915001 chr2R_17915001 RAL-714 636 chr2R 17982923 17982949 chr2R 17983008 17983034 8 85 1.5 2.5 2.0 2.7 111 chr2R 17982923 intron dpr13 - chr2R 17982978 intron dpr13 - chr2R 17983034 intron dpr13 - chr2R_8_17980001 chr2R_17980001 RAL-714 637 chr2R 18045674 18045702 chr2R 18046026 18046054 jockey 6 352 0.5 1.0 0.8 3.3 380 chr2R 18045674 intergenic not near genes chr2R 18045864 intergenic not near genes chr2R 18046054 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-714 638 chr2R 18075992 18076001 chr2R 18076085 18076094 4 93 2.0 6.0 4.0 0.8 102 chr2R 18075992 intron CG34386 + chr2R 18076043 intron CG34386 + chr2R 18076094 intron CG34386 + chr2R_4_18075001 chr2R_18075001 RAL-714 639 chr2R 18248603 18248620 chr2R 18248682 18248700 5 80 2.5 3.5 3.0 1.2 97 chr2R 18248603 intergenic not near genes chr2R 18248652 intergenic not near genes chr2R 18248700 intergenic not near genes chr2R_5_18245001 chr2R_18245001 RAL-714 640 chr2R 18308284 18308308 chr2R 18308388 18308414 8 106 2.0 3.0 2.5 2.3 130 chr2R 18308284 intron sbb - chr2R 18308349 intron sbb - chr2R 18308414 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-714 641 chr2R 18376728 18376764 chr2R 18376817 18376852 6 90 0.5 2.0 1.2 2.7 124 chr2R 18376728 intergenic not near genes chr2R 18376790 intergenic not near genes chr2R 18376852 intergenic not near genes chr2R_6_18375001 chr2R_18375001 RAL-714 642 chr2R 18402767 18402780 chr2R 18402970 18402976 4 200 3.0 0.5 1.8 1.4 209 chr2R 18402767 intergenic GstE4 + chr2R 18402872 intergenic GstE4 + chr2R 18402976 intergenic GstE4 + chr2R_4_18400001 chr2R_18400001 RAL-714 643 chr2R 18519957 18519974 chr2R 18520033 18520050 5 76 1.0 6.5 3.8 1.0 93 chr2R 18519957 intron CG43066 + chr2R 18520004 intron CG43066 + chr2R 18520050 intron CG43066 + chr2R_5_18520001 chr2R_18520001 RAL-714 644 chr2R 18575797 18575831 chr2R 18581985 18582018 3S18 14 6183 1.0 5.0 3.0 3.5 6221 chr2R 18575797 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_14_18575001 chr2R_18575001 RAL-714 645 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 9 9152 1.5 4.0 2.8 2.4 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-714 646 chr2R 18612780 18612801 chr2R 18612864 18612885 8 84 1.5 2.5 2.0 2.7 105 chr2R 18612780 intergenic CG42697 -,CG10927 + chr2R 18612832 intergenic CG42697 -,CG10927 + chr2R 18612885 intergenic CG42697 -,CG10927 + chr2R_8_18610001 chr2R_18610001 RAL-714 647 chr2R 18785914 18785947 chr2R 18785992 18786026 5 79 1.5 4.0 2.8 1.3 112 chr2R 18785914 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786026 intron CG15080 + chr2R_5_18785001 chr2R_18785001 RAL-714 648 chr2R 18883086 18883120 chr2R 18883164 18883199 12 78 1.5 1.5 1.5 4.8 113 chr2R 18883086 intron sano + chr2R 18883142 intron sano + chr2R 18883199 intron sano + chr2R_12_18880001 chr2R_18880001 RAL-714 649 chr2R 18900712 18900745 chr2R 18901017 18901043 11 304 3.0 4.0 3.5 2.4 331 chr2R 18900712 intron sano + chr2R 18900878 intron sano + chr2R 18901043 intron sano + chr2R_11_18900001 chr2R_18900001 RAL-714 650 chr2R 18924277 18924303 chr2R 18924357 18924383 11 79 3.5 4.0 3.8 2.3 106 chr2R 18924277 intron sano + chr2R 18924330 intron sano + chr2R 18924383 intron sano + chr2R_11_18920001 chr2R_18920001 RAL-714 651 chr2R 18928702 18928931 chr2R 18928779 18929013 6 79 2.0 9.0 5.5 0.9 311 chr2R 18928702 intron sano + chr2R 18928858 intron sano + chr2R 18929013 intron sano + chr2R_6_18925001 chr2R_18925001 RAL-714 652 chr2R 18930451 18930483 chr2R 18930544 18930576 6 93 3.0 2.5 2.8 1.6 125 chr2R 18930451 intron sano + chr2R 18930514 intron sano + chr2R 18930576 intron sano + chr2R_6_18930001 chr2R_18930001 RAL-714 653 chr2R 18984469 18984491 chr2R 18984728 18984750 7 257 3.5 1.5 2.5 2.0 281 chr2R 18984469 intergenic not near genes chr2R 18984610 intergenic not near genes chr2R 18984750 intergenic not near genes chr2R_7_18980001 chr2R_18980001 RAL-714 654 chr2R 18992015 18992049 chr2R 18992156 18992190 10 140 1.5 2.5 2.0 3.3 175 chr2R 18992015 intron tn + chr2R 18992102 intron tn + chr2R 18992190 intron tn + chr2R_10_18990001 chr2R_18990001 RAL-714 655 chr2R 19015441 19015464 chr2R 19015529 19015552 7 88 3.5 4.5 4.0 1.4 111 chr2R 19015441 intergenic not near genes chr2R 19015496 intergenic not near genes chr2R 19015552 intergenic not near genes chr2R_7_19015001 chr2R_19015001 RAL-714 656 chr2R 19171369 19171389 chr2R 19171572 19171592 9 203 2.0 3.0 2.5 2.6 223 chr2R 19171369 exon CG10737 + chr2R 19171480 intron CG10737 + chr2R 19171592 intron CG10737 + chr2R_9_19170001 chr2R_19170001 RAL-714 657 chr2R 19234836 19234865 chr2R 19234918 19234947 7 82 2.0 4.0 3.0 1.8 111 chr2R 19234836 intron cora + chr2R 19234892 intron cora + chr2R 19234947 intron cora + chr2R_7_19230001 chr2R_19230001 RAL-714 658 chr2R 19253098 19253126 chr2R 19253188 19253216 6 89 3.0 2.0 2.5 1.7 118 chr2R 19253098 intron CG33453 - chr2R 19253157 exon CG33453 - chr2R 19253216 5` UTR CG33453 - chr2R_6_19250001 chr2R_19250001 RAL-714 659 chr2R 19331233 19331264 chr2R 19331313 19331343 9 80 1.5 5.5 3.5 2.0 110 chr2R 19331233 intron,intron Rgk1 -,CG34045 + chr2R 19331288 intron,intron Rgk1 -,CG34045 + chr2R 19331343 intron,intron Rgk1 -,CG34045 + chr2R_9_19330001 chr2R_19330001 RAL-714 660 chr2R 19535102 19535124 chr2R 19535317 19535340 4 216 4.0 1.5 2.8 1.1 238 chr2R 19535102 intron sm - chr2R 19535221 intron sm - chr2R 19535340 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-714 661 chr2R 19536465 19536493 chr2R 19536547 19536575 7 82 2.0 3.5 2.8 1.8 110 chr2R 19536465 intron sm - chr2R 19536520 intron sm - chr2R 19536575 intron sm - chr2R_7_19535001 chr2R_19535001 RAL-714 662 chr2R 19601277 19601302 chr2R 19601367 19601392 7 90 1.5 2.5 2.0 2.3 115 chr2R 19601277 intron sm - chr2R 19601334 intron sm - chr2R 19601392 intron sm - chr2R_7_19600001 chr2R_19600001 RAL-714 663 chr2R 19710946 19710970 chr2R 19711114 19711138 12 168 2.5 3.5 3.0 3.0 192 chr2R 19710946 intergenic not near genes chr2R 19711042 intergenic not near genes chr2R 19711138 intergenic not near genes chr2R_12_19710001 chr2R_19710001 RAL-714 664 chr2R 19714703 19714727 chr2R 19714779 19714803 8 76 0.0 0.5 0.2 6.7 100 chr2R 19714703 3` UTR CG8517 + chr2R 19714753 3` UTR CG8517 + chr2R 19714803 3` UTR CG8517 + chr2R_8_19710001 chr2R_19710001 RAL-714 665 chr2R 19776606 19776630 chr2R 19779929 19779953 jockey 4 3323 2.0 5.5 3.8 0.8 3347 chr2R 19776606 intergenic not near genes chr2R 19778280 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-714 666 chr2R 19807676 19807702 chr2R 19807758 19807784 5 82 0.5 2.0 1.2 2.3 108 chr2R 19807676 intergenic not near genes chr2R 19807730 intergenic not near genes chr2R 19807784 intergenic not near genes chr2R_5_19805001 chr2R_19805001 RAL-714 667 chr2R 19857340 19857355 chr2R 19857426 19857442 6 86 4.0 3.5 3.8 1.2 102 chr2R 19857340 intergenic not near genes chr2R 19857391 intergenic not near genes chr2R 19857442 intergenic not near genes chr2R_6_19855001 chr2R_19855001 RAL-714 668 chr2R 19884139 19884169 chr2R 19884223 19884238 4 80 0.5 4.0 2.2 1.2 99 chr2R 19884139 intergenic not near genes chr2R 19884188 intergenic not near genes chr2R 19884238 intergenic not near genes chr2R_4_19880001 chr2R_19880001 RAL-714 669 chr2R 19957428 19957454 chr2R 19962630 19962654 copia 6 5201 2.5 3.0 2.8 1.6 5226 chr2R 19957428 intergenic CG44623 + chr2R 19960041 intergenic not near genes chr2R 19962654 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-714 670 chr2R 20108964 20108998 chr2R 20109060 20109079 7 88 2.5 3.0 2.8 1.8 115 chr2R 20108964 intergenic not near genes chr2R 20109022 intergenic not near genes chr2R 20109079 intergenic not near genes chr2R_7_20105001 chr2R_20105001 RAL-714 671 chr2R 20125719 20125745 chr2R 20125822 20125848 5 103 2.5 1.0 1.8 1.8 129 chr2R 20125719 intergenic not near genes chr2R 20125784 intergenic not near genes chr2R 20125848 intergenic not near genes chr2R_5_20125001 chr2R_20125001 RAL-714 672 chr2R 20174642 20174676 chr2R 20174718 20174750 5 74 3.0 0.5 1.8 1.8 108 chr2R 20174642 intergenic not near genes chr2R 20174696 intergenic not near genes chr2R 20174750 intergenic not near genes chr2R_5_20170001 chr2R_20170001 RAL-714 673 chr2R 20196752 20196777 chr2R 20196861 20196864 5 104 4.5 0.0 2.2 1.6 112 chr2R 20196752 intergenic not near genes chr2R 20196808 intergenic not near genes chr2R 20196864 intergenic not near genes chr2R_5_20195001 chr2R_20195001 RAL-714 674 chr2R 20223954 20223966 chr2R 20224039 20224051 4 85 10.0 1.0 5.5 0.6 97 chr2R 20223954 intergenic not near genes chr2R 20224002 intergenic not near genes chr2R 20224051 intergenic not near genes chr2R_4_20220001 chr2R_20220001 RAL-714 675 chr2R 20382347 20382354 chr2R 20382432 20382439 4 85 2.5 2.0 2.2 1.2 92 chr2R 20382347 intergenic not near genes chr2R 20382393 intergenic not near genes chr2R 20382439 intergenic not near genes chr2R_4_20380001 chr2R_20380001 RAL-714 676 chr2R 20523039 20523058 chr2R 20523150 20523153 10 108 3.5 3.0 3.2 2.4 114 chr2R 20523039 intergenic not near genes chr2R 20523096 intergenic not near genes chr2R 20523153 intergenic not near genes chr2R_10_20520001 chr2R_20520001 RAL-714 677 chr2R 20541987 20542013 chr2R 20542065 20542091 6 78 2.0 0.5 1.2 2.7 104 chr2R 20541987 intergenic not near genes chr2R 20542039 intergenic not near genes chr2R 20542091 intergenic not near genes chr2R_6_20540001 chr2R_20540001 RAL-714 678 chr2R 20601728 20601752 chr2R 20601813 20601837 10 85 1.0 2.5 1.8 3.6 109 chr2R 20601728 intron bl + chr2R 20601782 intron bl + chr2R 20601837 intron bl + chr2R_10_20600001 chr2R_20600001 RAL-714 679 chr2R 20690758 20690790 chr2R 20690834 20690866 10 72 2.0 4.0 3.0 2.5 108 chr2R 20690758 intergenic not near genes chr2R 20690812 intergenic not near genes chr2R 20690866 intergenic not near genes chr2R_10_20690001 chr2R_20690001 RAL-714 680 chr2R 20739441 20739470 chr2R 20744209 20744238 F-element 5 4768 1.0 3.5 2.2 1.6 4797 chr2R 20739441 intron dpr + chr2R 20741840 intron dpr + chr2R 20744238 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-714 681 chr2R 20772278 20772307 chr2R 20772361 20772389 8 83 1.5 5.0 3.2 1.9 111 chr2R 20772278 intergenic not near genes chr2R 20772334 intergenic not near genes chr2R 20772389 intergenic not near genes chr2R_8_20770001 chr2R_20770001 RAL-714 682 chr2R 20783311 20783332 chr2R 20788083 20788104 F-element 6 4772 1.5 5.0 3.2 1.4 4793 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-714 683 chr2R 20830535 20830570 chr2R 20830615 20830641 13 79 2.0 2.0 2.0 4.3 106 chr2R 20830535 intron,intron insc -,sktl - chr2R 20830588 intron,intron insc -,sktl - chr2R 20830641 intron,intron insc -,sktl - chr2R_13_20830001 chr2R_20830001 RAL-714 684 chr2R 20842902 20842917 chr2R 20842985 20843000 5 83 1.0 2.5 1.8 1.8 98 chr2R 20842902 intergenic not near genes chr2R 20842951 intergenic not near genes chr2R 20843000 intergenic not near genes chr2R_5_20840001 chr2R_20840001 RAL-714 685 chr2R 20865711 20865733 chr2R 20865793 20865816 9 82 4.5 1.0 2.8 2.4 105 chr2R 20865711 intron CG15227 + chr2R 20865764 intron CG15227 + chr2R 20865816 intron CG15227 + chr2R_9_20865001 chr2R_20865001 RAL-714 686 chr2R 20962908 20962939 chr2R 20963006 20963037 9 98 1.5 1.5 1.5 3.6 129 chr2R 20962908 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-714 687 chr2R 20967505 20967538 chr2R 20967615 20967632 4 106 2.0 1.5 1.8 1.4 127 chr2R 20967505 intergenic not near genes chr2R 20967568 intergenic not near genes chr2R 20967632 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-714 688 chr2R 21110810 21110823 chr2R 21110903 21110916 5 92 1.0 5.5 3.2 1.2 106 chr2R 21110810 intron ktub + chr2R 21110863 intron ktub + chr2R 21110916 intron ktub + chr2R_5_21110001 chr2R_21110001 RAL-714 689 chr2R 21113481 21113486 chr2R 21113570 21113575 6 89 4.5 0.5 2.5 1.7 94 chr2R 21113481 intron ktub + chr2R 21113528 intron ktub + chr2R 21113575 intron ktub + chr2R_6_21110001 chr2R_21110001 RAL-714 690 chr2R 21136899 21136917 chr2R 21136982 21137001 7 84 1.5 2.0 1.8 2.5 102 chr2R 21136899 intron Magi - chr2R 21136950 intron Magi - chr2R 21137001 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-714 691 chr2R 21151127 21151137 chr2R 21153760 21153770 opus 9 2632 0.0 2.0 1.0 4.5 2643 chr2R 21151127 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153770 intron CG30389 - chr2R_9_21150001 chr2R_21150001 RAL-714 692 chr2R 21303343 21303364 chr2R 21303553 21303572 4 210 2.5 1.0 1.8 1.4 229 chr2R 21303343 intron CG42672 + chr2R 21303458 intron CG42672 + chr2R 21303572 intron CG42672 + chr2R_4_21300001 chr2R_21300001 RAL-714 693 chr2R 21508070 21508090 chr2R 21508151 21508171 4 81 1.0 4.5 2.8 1.1 101 chr2R 21508070 intron MESK2 + chr2R 21508120 intron MESK2 + chr2R 21508171 intron MESK2 + chr2R_4_21505001 chr2R_21505001 RAL-714 694 chr2R 21546798 21546820 chr2R 21546873 21546900 6 78 2.5 2.0 2.2 1.9 102 chr2R 21546798 intron Egfr + chr2R 21546849 intron Egfr + chr2R 21546900 intron Egfr + chr2R_6_21545001 chr2R_21545001 RAL-714 695 chr2R 21659667 21659686 chr2R 21659901 21659923 10 232 31.5 21.5 26.5 0.4 256 chr2R 21659667 exon Rae1 - chr2R 21659795 exon Rae1 - chr2R 21659923 exon Rae1 - chr2R_10_21655001 chr2R_21655001 RAL-714 696 chr2R 21753086 21753105 chr2R 21753569 21753590 roo 4 484 4.5 2.5 3.5 0.9 504 chr2R 21753086 intergenic not near genes chr2R 21753338 intergenic not near genes chr2R 21753590 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-714 697 chr2R 21759562 21759581 chr2R 21759647 21759667 6 85 2.5 1.5 2.0 2.0 105 chr2R 21759562 intergenic not near genes chr2R 21759614 intergenic not near genes chr2R 21759667 intergenic not near genes chr2R_6_21755001 chr2R_21755001 RAL-714 698 chr2R 21805827 21805861 chr2R 21805904 21805938 7 77 4.0 1.0 2.5 2.0 111 chr2R 21805827 intergenic not near genes chr2R 21805882 intergenic not near genes chr2R 21805938 intergenic not near genes chr2R_7_21805001 chr2R_21805001 RAL-714 699 chr2R 21862706 21862726 chr2R 21862798 21862818 5 92 1.5 1.5 1.5 2.0 112 chr2R 21862706 intergenic not near genes chr2R 21862762 intergenic not near genes chr2R 21862818 intergenic not near genes chr2R_5_21860001 chr2R_21860001 RAL-714 700 chr2R 21869993 21870006 chr2R 21870300 21870312 5 307 3.0 1.0 2.0 1.7 319 chr2R 21869993 intergenic not near genes chr2R 21870152 intergenic not near genes chr2R 21870312 intergenic not near genes chr2R_5_21870001 chr2R_21870001 RAL-714 701 chr2R 21886136 21886161 chr2R 21886208 21886240 5 78 3.5 0.5 2.0 1.7 104 chr2R 21886136 intron Fili + chr2R 21886188 intron Fili + chr2R 21886240 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-714 702 chr2R 21932249 21932282 chr2R 21932326 21932360 9 76 1.0 1.5 1.2 4.1 111 chr2R 21932249 intron Fili + chr2R 21932304 intron Fili + chr2R 21932360 intron Fili + chr2R_9_21930001 chr2R_21930001 RAL-714 703 chr2R 21946770 21946803 chr2R 21946866 21946899 9 96 2.0 2.0 2.0 3.0 129 chr2R 21946770 intergenic not near genes chr2R 21946834 intergenic not near genes chr2R 21946899 intergenic not near genes chr2R_9_21945001 chr2R_21945001 RAL-714 704 chr2R 22009060 22009077 chr2R 22009141 22009157 4 81 0.0 2.5 1.2 1.8 97 chr2R 22009060 intron CG34370 - chr2R 22009108 intron CG34370 - chr2R 22009157 intron CG34370 - chr2R_4_22005001 chr2R_22005001 RAL-714 705 chr2R 22072685 22072714 chr2R 22072770 22072799 13 84 0.0 3.5 1.8 4.6 114 chr2R 22072685 intron CG11474 - chr2R 22072742 intron CG11474 - chr2R 22072799 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-714 706 chr2R 22102115 22102138 chr2R 22102203 22102226 10 87 1.5 1.5 1.5 4.0 111 chr2R 22102115 intergenic not near genes chr2R 22102170 intergenic not near genes chr2R 22102226 intergenic not near genes chr2R_10_22100001 chr2R_22100001 RAL-714 707 chr2R 22349692 22349720 chr2R 22351475 22351504 jockey 7 1784 1.5 1.0 1.2 3.2 1812 chr2R 22349692 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-714 708 chr2R 22360384 22360396 chr2R 22360811 22360828 jockey 4 431 4.0 3.5 3.8 0.8 444 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-714 709 chr2R 22503876 22503886 chr2R 22503971 22503981 4 95 0.0 1.0 0.5 2.7 105 chr2R 22503876 intron px - chr2R 22503928 intron px - chr2R 22503981 intron px - chr2R_4_22500001 chr2R_22500001 RAL-714 710 chr2R 22505416 22505449 chr2R 22505610 22505644 7 195 0.5 4.5 2.5 2.0 228 chr2R 22505416 intron px - chr2R 22505530 intron px - chr2R 22505644 intron px - chr2R_7_22505001 chr2R_22505001 RAL-714 711 chr2R 22506720 22506737 chr2R 22506798 22506815 5 78 1.5 0.0 0.8 2.8 95 chr2R 22506720 intron px - chr2R 22506768 intron px - chr2R 22506815 intron px - chr2R_5_22505001 chr2R_22505001 RAL-714 712 chr2R 22525745 22525784 chr2R 22529300 22529338 jockey 12 3555 1.0 3.5 2.2 3.8 3593 chr2R 22525745 intron px - chr2R 22527542 intron px - chr2R 22529338 intron px - chr2R_12_22525001 chr2R_22525001 RAL-714 713 chr2R 22574175 22574181 chr2R 22574255 22574261 4 80 1.0 4.0 2.5 1.1 86 chr2R 22574175 intron dnr1 - chr2R 22574218 intron dnr1 - chr2R 22574261 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-714 714 chr2R 22620832 22620858 chr2R 22620932 22620958 6 100 1.0 1.5 1.2 2.7 126 chr2R 22620832 5` UTR CG33143 + chr2R 22620895 5` UTR CG33143 + chr2R 22620958 5` UTR CG33143 + chr2R_6_22620001 chr2R_22620001 RAL-714 715 chr2R 22774966 22774993 chr2R 22775385 22775412 jockey 11 419 4.0 4.0 4.0 2.2 446 chr2R 22774966 intron CG42260 - chr2R 22775189 intron CG42260 - chr2R 22775412 intron CG42260 - chr2R_11_22775001 chr2R_22775001 RAL-714 716 chr2R 22835368 22835394 chr2R 22835444 22835470 11 73 4.0 4.0 4.0 2.2 102 chr2R 22835368 exon CG12490 + chr2R 22835419 exon CG12490 + chr2R 22835470 exon CG12490 + chr2R_11_22835001 chr2R_22835001 RAL-714 717 chr2R 22907403 22907434 chr2R 22907495 22907527 15 89 1.5 6.0 3.8 3.1 124 chr2R 22907403 intron nahoda + chr2R 22907465 intron nahoda + chr2R 22907527 intron nahoda + chr2R_15_22905001 chr2R_22905001 RAL-714 718 chr2R 22988311 22988319 chr2R 22988392 22988400 4 81 1.5 2.5 2.0 1.3 89 chr2R 22988311 intron twi + chr2R 22988356 intron twi + chr2R 22988400 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-714 719 chr2R 23052654 23052678 chr2R 23052730 23052754 5 76 4.5 2.0 3.2 1.2 100 chr2R 23052654 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052754 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-714 720 chr2R 23053999 23054032 chr2R 23054077 23054110 10 77 0.5 2.5 1.5 4.0 111 chr2R 23053999 intergenic not near genes chr2R 23054054 intergenic not near genes chr2R 23054110 intergenic not near genes chr2R_10_23050001 chr2R_23050001 RAL-714 721 chr2R 23061750 23061763 chr2R 23061866 23061880 6 117 1.5 4.5 3.0 1.5 130 chr2R 23061750 3` UTR l(2)06496 - chr2R 23061815 3` UTR l(2)06496 - chr2R 23061880 3` UTR l(2)06496 - chr2R_6_23060001 chr2R_23060001 RAL-714 722 chr2R 23070406 23070441 chr2R 23070502 23070536 22 95 3.5 5.0 4.2 4.2 130 chr2R 23070406 intron l(2)k09913 + chr2R 23070471 intron l(2)k09913 + chr2R 23070536 intron l(2)k09913 + chr2R_22_23070001 chr2R_23070001 RAL-714 723 chr2R 23186578 23186598 chr2R 23186656 23186676 6 78 3.0 3.0 3.0 1.5 98 chr2R 23186578 intron CG34371 - chr2R 23186627 intron CG34371 - chr2R 23186676 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-714 724 chr2R 23188558 23188588 chr2R 23188636 23188666 4 78 1.0 4.5 2.8 1.1 108 chr2R 23188558 intron CG34371 - chr2R 23188612 intron CG34371 - chr2R 23188666 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-714 725 chr2R 23236840 23236847 chr2R 23236932 23236938 4 92 0.0 3.5 1.8 1.4 98 chr2R 23236840 intergenic not near genes chr2R 23236889 intergenic not near genes chr2R 23236938 intergenic not near genes chr2R_4_23235001 chr2R_23235001 RAL-714 726 chr2R 23350509 23350540 chr2R 23350636 23350667 17 126 1.0 2.0 1.5 6.8 158 chr2R 23350509 intergenic not near genes chr2R 23350588 intergenic not near genes chr2R 23350667 intergenic not near genes chr2R_17_23350001 chr2R_23350001 RAL-714 727 chr2R 23356274 23356309 chr2R 23356363 23356398 15 89 2.5 3.0 2.8 3.9 124 chr2R 23356274 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356398 3` UTR,3` UTR Rpi +,CG3500 - chr2R_15_23355001 chr2R_23355001 RAL-714 728 chr2R 23429212 23429237 chr2R 23429437 23429462 6 225 4.5 3.0 3.8 1.2 250 chr2R 23429212 intron CG9815 - chr2R 23429337 intron CG9815 - chr2R 23429462 intron CG9815 - chr2R_6_23425001 chr2R_23425001 RAL-714 729 chr2R 23493007 23493039 chr2R 23493089 23493121 12 81 0.5 1.0 0.8 6.7 114 chr2R 23493007 intergenic not near genes chr2R 23493064 intergenic not near genes chr2R 23493121 intergenic not near genes chr2R_12_23490001 chr2R_23490001 RAL-714 730 chr2R 23508921 23508931 chr2R 23509038 23509048 6 117 1.5 1.5 1.5 2.4 127 chr2R 23508921 intergenic not near genes chr2R 23508984 intergenic not near genes chr2R 23509048 intergenic not near genes chr2R_6_23505001 chr2R_23505001 RAL-714 731 chr2R 23529574 23529581 chr2R 23537149 23537157 412 4 7576 11.0 5.5 8.2 0.4 7583 chr2R 23529574 intron bw - chr2R 23533366 intron bw - chr2R 23537157 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-714 732 chr2R 23529587 23529607 chr2R 23537148 23537171 412 11 7565 5.0 5.5 5.2 1.8 7584 chr2R 23529587 intron bw - chr2R 23533379 intron bw - chr2R 23537171 exon bw - chr2R_11_23530001 chr2R_23530001 RAL-714 733 chr2R 23594835 23594870 chr2R 23595052 23595087 10 217 4.5 2.5 3.5 2.2 252 chr2R 23594835 intron apt + chr2R 23594961 intron apt + chr2R 23595087 intron apt + chr2R_10_23590001 chr2R_23590001 RAL-714 734 chr2R 23607036 23607190 chr2R 23607117 23607283 14 81 4.0 3.0 3.5 3.1 247 chr2R 23607036 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607283 intron CG17664 - chr2R_14_23605001 chr2R_23605001 RAL-714 735 chr2R 23784478 23784504 chr2R 23784556 23784570 11 76 2.0 1.5 1.8 3.9 92 chr2R 23784478 intron CG9850 - chr2R 23784524 intron CG9850 - chr2R 23784570 intron CG9850 - chr2R_11_23780001 chr2R_23780001 RAL-714 736 chr2R 23819932 23819946 chr2R 23820022 23820036 6 90 1.5 3.5 2.5 1.7 104 chr2R 23819932 intergenic CG5549 + chr2R 23819984 intergenic CG5549 + chr2R 23820036 intergenic CG5549 + chr2R_6_23815001 chr2R_23815001 RAL-714 737 chr2R 24008409 24008443 chr2R 24008495 24008529 15 85 3.5 3.0 3.2 3.6 120 chr2R 24008409 intron Unc-89 - chr2R 24008469 intron Unc-89 - chr2R 24008529 intron Unc-89 - chr2R_15_24005001 chr2R_24005001 RAL-714 738 chr2R 24031382 24031410 chr2R 24031466 24031494 16 84 2.5 2.5 2.5 4.6 112 chr2R 24031382 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_16_24030001 chr2R_24030001 RAL-714 739 chr2R 24147070 24147097 chr2R 24154647 24154675 412 10 7577 2.0 5.0 3.5 2.2 7605 chr2R 24147070 intron Dat + chr2R 24150872 intron Dat + chr2R 24154675 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-714 740 chr2R 24177242 24177264 chr2R 24184727 24184749 412 8 7485 5.0 2.5 3.8 1.7 7507 chr2R 24177242 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184749 3` UTR Nop60B + chr2R_8_24180001 chr2R_24180001 RAL-714 741 chr2R 24218577 24218578 chr2R 24218641 24218657 4 78 4.5 5.0 4.8 0.7 80 chr2R 24218577 intron CG30419 - chr2R 24218617 intron CG30419 - chr2R 24218657 intron CG30419 - chr2R_4_24215001 chr2R_24215001 RAL-714 742 chr2R 24303890 24303919 chr2R 24303974 24304003 10 84 1.0 0.0 0.5 6.7 113 chr2R 24303890 intergenic not near genes chr2R 24303946 intergenic not near genes chr2R 24304003 intergenic not near genes chr2R_10_24300001 chr2R_24300001 RAL-714 743 chr2R 24323620 24323651 chr2R 24323713 24323744 10 93 3.0 4.5 3.8 2.1 124 chr2R 24323620 intergenic not near genes chr2R 24323682 intergenic not near genes chr2R 24323744 intergenic not near genes chr2R_10_24320001 chr2R_24320001 RAL-714 744 chr2R 24636913 24636929 chr2R 24636999 24637015 4 86 2.5 0.0 1.2 1.8 102 chr2R 24636913 intron CG13594 - chr2R 24636964 intron CG13594 - chr2R 24637015 intron CG13594 - chr2R_4_24635001 chr2R_24635001 RAL-714 745 chr2R 24722365 24722397 chr2R 24722447 24722478 11 82 0.5 2.0 1.2 5.0 113 chr2R 24722365 intron Mid1 - chr2R 24722422 intron Mid1 - chr2R 24722478 intron Mid1 - chr2R_11_24720001 chr2R_24720001 RAL-714 746 chr2R 24727884 24727917 chr2R 24735390 24735425 mdg1 18 7507 3.5 5.0 4.2 3.5 7541 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_18_24730001 chr2R_24730001 RAL-714 747 chr2R 24739755 24739787 chr2R 24739835 24739868 15 80 1.0 4.0 2.5 4.3 113 chr2R 24739755 intergenic CR44828 - chr2R 24739812 intergenic CR44828 - chr2R 24739868 intergenic CR44828 - chr2R_15_24735001 chr2R_24735001 RAL-714 748 chr2R 24763611 24763644 chr2R 24765587 24765619 G2 15 1974 5.0 4.0 4.5 2.7 2008 chr2R 24763611 exon CG3894 + chr2R 24764615 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-714 749 chr2R 24767996 24768020 chr2R 24768079 24768106 4 84 1.0 2.0 1.5 1.6 110 chr2R 24767996 5` UTR GstE12 - chr2R 24768051 5` UTR GstE12 - chr2R 24768106 5` UTR GstE12 - chr2R_4_24765001 chr2R_24765001 RAL-714 750 chr2R 25018048 25018060 chr2R 25018134 25018145 5 86 0.5 8.5 4.5 0.9 97 chr2R 25018048 intron uzip + chr2R 25018096 intron uzip + chr2R 25018145 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-714 751 chr2R 25078991 25079021 chr2R 25079118 25079147 9 127 2.0 4.0 3.0 2.2 156 chr2R 25078991 intron gol - chr2R 25079069 intron gol - chr2R 25079147 intron gol - chr2R_9_25075001 chr2R_25075001 RAL-714 752 chr2R 25101275 25101302 chr2R 25101376 25101404 15 102 2.5 1.5 2.0 5.0 129 chr2R 25101275 intron lov - chr2R 25101340 intron lov - chr2R 25101404 intron lov - chr2R_15_25100001 chr2R_25100001 RAL-714 753 chr2R 25122962 25122993 chr2R 25123040 25123072 6 79 0.5 0.0 0.2 5.0 110 chr2R 25122962 intron lov - chr2R 25123017 intron lov - chr2R 25123072 intron lov - chr2R_6_25120001 chr2R_25120001 RAL-714 754 chr2R 25141649 25141682 chr2R 25159338 25159372 roo 9 17690 0.5 1.0 0.8 5.0 17723 chr2R 25141649 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159372 intergenic not near genes chr2R_9_25150001 chr2R_25150001 RAL-714 755 chr3L 68980 69011 chr3L 69067 69098 9 87 2.0 1.0 1.5 3.6 118 chr3L 68980 3` UTR Lsp1gamma + chr3L 69039 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_9_65001 chr3L_65001 RAL-714 756 chr3L 88745 88770 chr3L 90665 90690 5 1920 1.5 2.0 1.8 1.8 1945 chr3L 88745 intergenic not near genes chr3L 89718 intergenic not near genes chr3L 90690 intergenic not near genes chr3L_5_85001 chr3L_85001 RAL-714 757 chr3L 296288 296310 chr3L 296370 296392 5 82 1.5 3.0 2.2 1.6 104 chr3L 296288 intron RhoGEF3 + chr3L 296340 intron RhoGEF3 + chr3L 296392 intron RhoGEF3 + chr3L_5_295001 chr3L_295001 RAL-714 758 chr3L 365524 365553 chr3L 365610 365639 6 86 3.5 0.0 1.8 2.1 115 chr3L 365524 3` UTR CG1233 + chr3L 365582 3` UTR CG1233 + chr3L 365639 3` UTR CG1233 + chr3L_6_365001 chr3L_365001 RAL-714 759 chr3L 402688 402717 chr3L 409740 409770 297 15 7052 5.0 5.0 5.0 2.5 7082 chr3L 402688 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_15_405001 chr3L_405001 RAL-714 760 chr3L 459983 460007 chr3L 460060 460084 11 76 2.5 4.5 3.5 2.4 101 chr3L 459983 intron klar - chr3L 460034 intron klar - chr3L 460084 intron klar - chr3L_11_460001 chr3L_460001 RAL-714 761 chr3L 514282 514306 chr3L 514359 514382 6 77 1.0 5.5 3.2 1.4 100 chr3L 514282 intron klar - chr3L 514332 intron klar - chr3L 514382 intron klar - chr3L_6_510001 chr3L_510001 RAL-714 762 chr3L 552687 552711 chr3L 552796 552820 6 109 4.0 1.0 2.5 1.7 133 chr3L 552687 intron hipk + chr3L 552754 intron hipk + chr3L 552820 intron hipk + chr3L_6_550001 chr3L_550001 RAL-714 763 chr3L 606892 606899 chr3L 606968 606975 4 76 4.0 0.0 2.0 1.3 83 chr3L 606892 intergenic Reg-2 - chr3L 606934 intergenic Reg-2 - chr3L 606975 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-714 764 chr3L 643073 643077 chr3L 643143 643154 4 74 6.5 9.0 7.8 0.5 81 chr3L 643073 5` UTR CR43334 + chr3L 643114 5` UTR CR43334 + chr3L 643154 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-714 765 chr3L 650084 650104 chr3L 650174 650193 5 90 3.5 2.5 3.0 1.2 109 chr3L 650084 intron Gale + chr3L 650138 intron Gale + chr3L 650193 intron Gale + chr3L_5_650001 chr3L_650001 RAL-714 766 chr3L 651389 651424 chr3L 651475 651512 5 86 1.0 4.0 2.5 1.4 123 chr3L 651389 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651512 intergenic CG3402 -,Gale + chr3L_5_650001 chr3L_650001 RAL-714 767 chr3L 789914 789933 chr3L 790399 790418 roo 6 485 2.0 3.0 2.5 1.7 504 chr3L 789914 intergenic not near genes chr3L 790166 intergenic not near genes chr3L 790418 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-714 768 chr3L 858003 858015 chr3L 866483 866496 Tirant 4 8480 3.0 3.5 3.2 1.0 8493 chr3L 858003 intergenic not near genes chr3L 862250 intergenic not near genes chr3L 866496 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-714 769 chr3L 925175 925210 chr3L 932601 932636 mdg1 4 7426 1.5 0.0 0.8 2.2 7461 chr3L 925175 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-714 770 chr3L 933911 933942 chr3L 934014 934045 8 103 0.5 4.0 2.2 2.5 134 chr3L 933911 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-714 771 chr3L 939772 939800 chr3L 940889 940918 jockey 9 1120 2.0 3.0 2.5 2.6 1146 chr3L 939772 intron Glut1 + chr3L 940345 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-714 772 chr3L 1031587 1031596 chr3L 1031662 1031672 4 76 8.0 3.0 5.5 0.6 85 chr3L 1031587 intron trio - chr3L 1031630 intron trio - chr3L 1031672 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-714 773 chr3L 1040554 1040580 chr3L 1040637 1040664 11 84 2.5 2.0 2.2 3.4 110 chr3L 1040554 intron bab1 - chr3L 1040609 intron bab1 - chr3L 1040664 intron bab1 - chr3L_11_1040001 chr3L_1040001 RAL-714 774 chr3L 1047353 1047385 chr3L 1055164 1055197 412 4 7811 0.5 1.5 1.0 2.0 7844 chr3L 1047353 intron bab1 - chr3L 1051275 intron bab1 - chr3L 1055197 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-714 775 chr3L 1093825 1093843 chr3L 1093904 1093928 5 83 1.5 0.5 1.0 2.5 103 chr3L 1093825 intron bab1 - chr3L 1093876 intron bab1 - chr3L 1093928 intron bab1 - chr3L_5_1090001 chr3L_1090001 RAL-714 776 chr3L 1103991 1104014 chr3L 1104182 1104205 6 191 2.5 4.5 3.5 1.3 214 chr3L 1103991 intergenic not near genes chr3L 1104098 intergenic not near genes chr3L 1104205 intergenic not near genes chr3L_6_1100001 chr3L_1100001 RAL-714 777 chr3L 1109635 1109662 chr3L 1109723 1109750 9 88 1.0 3.0 2.0 3.0 115 chr3L 1109635 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109750 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-714 778 chr3L 1145244 1145263 chr3L 1145323 1145342 8 79 1.0 2.0 1.5 3.2 98 chr3L 1145244 intron bab2 - chr3L 1145293 intron bab2 - chr3L 1145342 intron bab2 - chr3L_8_1145001 chr3L_1145001 RAL-714 779 chr3L 1154129 1154160 chr3L 1163279 1163310 roo 5 9150 1.5 1.0 1.2 2.3 9181 chr3L 1154129 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163310 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-714 780 chr3L 1175748 1175752 chr3L 1175880 1175884 4 132 0.0 6.0 3.0 1.0 136 chr3L 1175748 intron bab2 - chr3L 1175816 intron bab2 - chr3L 1175884 intron bab2 - chr3L_4_1175001 chr3L_1175001 RAL-714 781 chr3L 1219608 1219614 chr3L 1227341 1227347 412 4 7732 4.0 8.0 6.0 0.6 7739 chr3L 1219608 intron mwh + chr3L 1223478 intron mwh + chr3L 1227347 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-714 782 chr3L 1396739 1396755 chr3L 1396822 1396839 6 84 4.5 5.0 4.8 1.0 100 chr3L 1396739 intron Ptp61F - chr3L 1396789 intron Ptp61F - chr3L 1396839 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-714 783 chr3L 1404631 1404647 chr3L 1404706 1404724 5 76 5.5 2.5 4.0 1.0 93 chr3L 1404631 intron Ptp61F - chr3L 1404678 intron Ptp61F - chr3L 1404724 intron Ptp61F - chr3L_5_1400001 chr3L_1400001 RAL-714 784 chr3L 1415773 1415800 chr3L 1415855 1415882 10 80 4.5 2.5 3.5 2.2 109 chr3L 1415773 intron Ptp61F - chr3L 1415828 intron Ptp61F - chr3L 1415882 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-714 785 chr3L 1424764 1424769 chr3L 1430014 1430020 Rt1a 5 5250 0.0 2.0 1.0 2.5 5256 chr3L 1424764 intron Ptp61F - chr3L 1427392 intron Ptp61F - chr3L 1430020 intron Ptp61F - chr3L_5_1425001 chr3L_1425001 RAL-714 786 chr3L 1477392 1477413 chr3L 1477482 1477503 4 90 3.0 0.0 1.5 1.6 111 chr3L 1477392 intron stet - chr3L 1477448 intron stet - chr3L 1477503 intron stet - chr3L_4_1475001 chr3L_1475001 RAL-714 787 chr3L 1506000 1506029 chr3L 1513597 1513625 17.6 9 7597 4.0 4.0 4.0 1.8 7625 chr3L 1506000 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_9_1505001 chr3L_1505001 RAL-714 788 chr3L 1637214 1637240 chr3L 1637288 1637290 10 71 4.0 3.0 3.5 2.2 76 chr3L 1637214 5` UTR nSyb - chr3L 1637252 5` UTR nSyb - chr3L 1637290 intron nSyb - chr3L_10_1635001 chr3L_1635001 RAL-714 789 chr3L 1639218 1639242 chr3L 1639399 1639423 7 181 0.0 4.0 2.0 2.3 205 chr3L 1639218 5` UTR metl - chr3L 1639320 intergenic metl -,Bgb + chr3L 1639423 intergenic metl -,Bgb + chr3L_7_1635001 chr3L_1635001 RAL-714 790 chr3L 1684027 1684040 chr3L 1684099 1684119 4 77 1.5 3.0 2.2 1.2 92 chr3L 1684027 intron CG7991 + chr3L 1684073 intron CG7991 + chr3L 1684119 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-714 791 chr3L 1740857 1740873 chr3L 1741102 1741116 pogo 4 243 2.0 2.5 2.2 1.2 259 chr3L 1740857 intron Gk + chr3L 1740986 intron Gk + chr3L 1741116 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-714 792 chr3L 1843898 1843929 chr3L 1843990 1844021 9 92 2.5 3.0 2.8 2.4 123 chr3L 1843898 intergenic not near genes chr3L 1843960 intergenic not near genes chr3L 1844021 intergenic not near genes chr3L_9_1840001 chr3L_1840001 RAL-714 793 chr3L 1988842 1988875 chr3L 1989018 1989030 14 176 2.0 5.5 3.8 2.9 188 chr3L 1988842 intergenic not near genes chr3L 1988936 intergenic not near genes chr3L 1989030 intergenic not near genes chr3L_14_1985001 chr3L_1985001 RAL-714 794 chr3L 2016831 2016862 chr3L 2016917 2016947 6 86 3.0 0.5 1.8 2.1 116 chr3L 2016831 intergenic not near genes chr3L 2016889 intergenic not near genes chr3L 2016947 intergenic not near genes chr3L_6_2015001 chr3L_2015001 RAL-714 795 chr3L 2108254 2108282 chr3L 2113458 2113486 copia 8 5204 0.5 1.5 1.0 4.0 5232 chr3L 2108254 intron sls - chr3L 2110870 intron sls - chr3L 2113486 intron sls - chr3L_8_2110001 chr3L_2110001 RAL-714 796 chr3L 2139207 2139234 chr3L 2139288 2139315 8 80 2.5 5.0 3.8 1.7 108 chr3L 2139207 intron zormin - chr3L 2139261 intron zormin - chr3L 2139315 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-714 797 chr3L 2143903 2143923 chr3L 2143983 2144003 8 79 3.0 0.0 1.5 3.2 100 chr3L 2143903 intron zormin - chr3L 2143953 intron zormin - chr3L 2144003 intron zormin - chr3L_8_2140001 chr3L_2140001 RAL-714 798 chr3L 2177396 2177422 chr3L 2177532 2177558 6 136 1.0 2.5 1.8 2.1 162 chr3L 2177396 intergenic not near genes chr3L 2177477 intergenic not near genes chr3L 2177558 intergenic not near genes chr3L_6_2175001 chr3L_2175001 RAL-714 799 chr3L 2187615 2187634 chr3L 2187697 2187717 6 81 2.0 2.5 2.2 1.9 102 chr3L 2187615 exon CG13810 + chr3L 2187666 3` UTR CG13810 + chr3L 2187717 intergenic CG13810 + chr3L_6_2185001 chr3L_2185001 RAL-714 800 chr3L 2302575 2302600 chr3L 2302662 2302686 5 87 0.5 2.5 1.5 2.0 111 chr3L 2302575 intergenic not near genes chr3L 2302630 intergenic not near genes chr3L 2302686 intergenic not near genes chr3L_5_2300001 chr3L_2300001 RAL-714 801 chr3L 2344352 2344373 chr3L 2344508 2344529 7 156 5.5 1.0 3.2 1.7 177 chr3L 2344352 3` UTR MsR1 + chr3L 2344440 3` UTR MsR1 + chr3L 2344529 3` UTR MsR1 + chr3L_7_2340001 chr3L_2340001 RAL-714 802 chr3L 2478878 2479035 chr3L 2478958 2479132 6 94 2.5 0.5 1.5 2.4 254 chr3L 2478878 intron CG45186 + chr3L 2479005 intron CG45186 + chr3L 2479132 intron CG45186 + chr3L_6_2475001 chr3L_2475001 RAL-714 803 chr3L 2533652 2533673 chr3L 2533734 2533755 6 79 5.5 3.0 4.2 1.2 103 chr3L 2533652 intron Spn - chr3L 2533704 intron Spn - chr3L 2533755 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-714 804 chr3L 2534612 2534647 chr3L 2534695 2534729 13 82 0.0 4.0 2.0 4.3 117 chr3L 2534612 intron Spn - chr3L 2534670 intron Spn - chr3L 2534729 exon Spn - chr3L_13_2530001 chr3L_2530001 RAL-714 805 chr3L 2561527 2561556 chr3L 2561604 2561633 10 76 4.5 2.0 3.2 2.4 106 chr3L 2561527 intron msn - chr3L 2561580 intron msn - chr3L 2561633 intron msn - chr3L_10_2560001 chr3L_2560001 RAL-714 806 chr3L 2683955 2683979 chr3L 2684031 2684055 6 76 2.0 1.5 1.8 2.1 100 chr3L 2683955 intron Fife - chr3L 2684005 intron Fife - chr3L 2684055 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-714 807 chr3L 2719539 2719557 chr3L 2719641 2719659 6 102 1.5 1.5 1.5 2.4 120 chr3L 2719539 3` UTR Mrtf - chr3L 2719599 3` UTR Mrtf - chr3L 2719659 3` UTR Mrtf - chr3L_6_2715001 chr3L_2715001 RAL-714 808 chr3L 2751454 2751464 chr3L 2755749 2755759 F-element 4 4295 2.0 3.0 2.5 1.1 4305 chr3L 2751454 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755759 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-714 809 chr3L 2827186 2827217 chr3L 2827272 2827303 4 86 2.0 3.0 2.5 1.1 117 chr3L 2827186 intron CG43444 - chr3L 2827244 intron CG43444 - chr3L 2827303 intron CG43444 - chr3L_4_2825001 chr3L_2825001 RAL-714 810 chr3L 2854480 2854502 chr3L 2854558 2854577 7 77 1.5 2.5 2.0 2.3 97 chr3L 2854480 intron CG43444 - chr3L 2854528 intron CG43444 - chr3L 2854577 intron CG43444 - chr3L_7_2850001 chr3L_2850001 RAL-714 811 chr3L 2882129 2882143 chr3L 2882202 2882219 4 75 3.5 1.5 2.5 1.1 90 chr3L 2882129 intergenic not near genes chr3L 2882174 intergenic not near genes chr3L 2882219 intergenic not near genes chr3L_4_2880001 chr3L_2880001 RAL-714 812 chr3L 2927839 2927872 chr3L 2936116 2936149 Tirant 6 8277 1.0 1.5 1.2 2.7 8310 chr3L 2927839 intron Shab + chr3L 2931994 intron Shab + chr3L 2936149 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-714 813 chr3L 3055888 3055921 chr3L 3055970 3056003 7 82 1.0 5.0 3.0 1.8 115 chr3L 3055888 intergenic CG32486 -,CG16753 + chr3L 3055946 3` UTR CG32486 - chr3L 3056003 3` UTR CG32486 - chr3L_7_3055001 chr3L_3055001 RAL-714 814 chr3L 3281445 3281454 chr3L 3281941 3281950 Doc 6 496 7.0 6.0 6.5 0.8 505 chr3L 3281445 intron CG12017 + chr3L 3281698 intron CG12017 + chr3L 3281950 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-714 815 chr3L 3281456 3281475 chr3L 3281939 3281948 Doc 13 492 4.5 5.5 5.0 2.2 492 chr3L 3281456 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281948 intron CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-714 816 chr3L 3317540 3317549 chr3L 3317619 3317628 4 79 1.0 3.0 2.0 1.3 88 chr3L 3317540 intergenic Drsl5 +,PIG-C - chr3L 3317584 intergenic Drsl5 +,PIG-C - chr3L 3317628 intergenic PIG-C -,Drsl5 + chr3L_4_3315001 chr3L_3315001 RAL-714 817 chr3L 3436289 3436304 chr3L 3436368 3436383 4 79 0.5 1.5 1.0 2.0 94 chr3L 3436289 intron eIF5B - chr3L 3436336 intron eIF5B - chr3L 3436383 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-714 818 chr3L 3475084 3475112 chr3L 3475528 3475556 jockey 8 443 1.5 3.5 2.5 2.3 472 chr3L 3475084 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-714 819 chr3L 3573169 3573193 chr3L 3573252 3573276 7 82 1.0 4.0 2.5 2.0 107 chr3L 3573169 intron Eip63E + chr3L 3573222 intron Eip63E + chr3L 3573276 intron Eip63E + chr3L_7_3570001 chr3L_3570001 RAL-714 820 chr3L 3601304 3601329 chr3L 3606615 3606640 copia 8 5311 3.0 1.0 2.0 2.7 5336 chr3L 3601304 intron Eip63E + chr3L 3603972 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-714 821 chr3L 3763756 3763769 chr3L 3763837 3763850 5 81 4.5 0.0 2.2 1.6 94 chr3L 3763756 intron CG32264 - chr3L 3763803 intron CG32264 - chr3L 3763850 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-714 822 chr3L 3766738 3766761 chr3L 3766824 3766847 4 86 1.5 0.0 0.8 2.2 109 chr3L 3766738 intron CG32264 - chr3L 3766792 intron CG32264 - chr3L 3766847 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-714 823 chr3L 3795604 3795625 chr3L 3795681 3795701 7 77 2.0 3.5 2.8 1.8 97 chr3L 3795604 intron CG32264 - chr3L 3795652 intron CG32264 - chr3L 3795701 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-714 824 chr3L 3833737 3833755 chr3L 3833978 3833996 pogo 5 241 3.0 1.0 2.0 1.7 259 chr3L 3833737 intron enc + chr3L 3833866 intron enc + chr3L 3833996 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-714 825 chr3L 3951560 3951584 chr3L 3951641 3951665 7 82 3.0 0.0 1.5 2.8 105 chr3L 3951560 intron CG14984 - chr3L 3951612 intron CG14984 - chr3L 3951665 intron CG14984 - chr3L_7_3950001 chr3L_3950001 RAL-714 826 chr3L 3981756 3981779 chr3L 3981837 3981862 4 82 4.0 3.5 3.8 0.8 106 chr3L 3981756 intergenic not near genes chr3L 3981809 intergenic not near genes chr3L 3981862 intergenic not near genes chr3L_4_3980001 chr3L_3980001 RAL-714 827 chr3L 4146816 4146840 chr3L 4146898 4146922 7 81 0.0 1.5 0.8 3.9 106 chr3L 4146816 intergenic not near genes chr3L 4146869 intergenic not near genes chr3L 4146922 intergenic not near genes chr3L_7_4145001 chr3L_4145001 RAL-714 828 chr3L 4209833 4209851 chr3L 4209911 4209929 5 78 2.0 2.5 2.2 1.6 96 chr3L 4209833 intron CG43367 + chr3L 4209881 intron CG43367 + chr3L 4209929 intron CG43367 + chr3L_5_4205001 chr3L_4205001 RAL-714 829 chr3L 4328737 4328762 chr3L 4336235 4336260 412 6 7498 2.0 0.5 1.2 2.7 7523 chr3L 4328737 intron Cip4 - chr3L 4332498 intron Cip4 - chr3L 4336260 intron Cip4 - chr3L_6_4330001 chr3L_4330001 RAL-714 830 chr3L 4347828 4347857 chr3L 4347914 4347942 5 86 3.5 2.5 3.0 1.2 114 chr3L 4347828 intron Cip4 - chr3L 4347885 intron Cip4 - chr3L 4347942 intron Cip4 - chr3L_5_4345001 chr3L_4345001 RAL-714 831 chr3L 4384898 4384928 chr3L 4384991 4385021 11 91 2.0 2.5 2.2 3.4 123 chr3L 4384898 intron slow + chr3L 4384960 intron slow + chr3L 4385021 intron slow + chr3L_11_4380001 chr3L_4380001 RAL-714 832 chr3L 4519418 4519454 chr3L 4519495 4519530 11 76 3.0 0.0 1.5 4.4 112 chr3L 4519418 intron Tie - chr3L 4519474 intron Tie - chr3L 4519530 intron Tie - chr3L_11_4515001 chr3L_4515001 RAL-714 833 chr3L 4607279 4607292 chr3L 4607370 4607383 6 91 2.5 2.5 2.5 1.7 104 chr3L 4607279 intron Src64B - chr3L 4607331 intron Src64B - chr3L 4607383 intron Src64B - chr3L_6_4605001 chr3L_4605001 RAL-714 834 chr3L 4744405 4744431 chr3L 4744485 4744511 4 80 0.5 0.0 0.2 3.3 106 chr3L 4744405 intron RhoGEF64C + chr3L 4744458 intron RhoGEF64C + chr3L 4744511 intron RhoGEF64C + chr3L_4_4740001 chr3L_4740001 RAL-714 835 chr3L 4748684 4748711 chr3L 4748822 4748849 6 138 1.5 0.5 1.0 3.0 165 chr3L 4748684 intron RhoGEF64C + chr3L 4748766 intron RhoGEF64C + chr3L 4748849 intron RhoGEF64C + chr3L_6_4745001 chr3L_4745001 RAL-714 836 chr3L 4899309 4899328 chr3L 4899395 4899415 5 87 1.0 0.0 0.5 3.3 106 chr3L 4899309 intron CG13704 + chr3L 4899362 intron CG13704 + chr3L 4899415 intron CG13704 + chr3L_5_4895001 chr3L_4895001 RAL-714 837 chr3L 4901130 4901159 chr3L 4907320 4907346 diver 5 6189 1.5 0.5 1.0 2.5 6216 chr3L 4901130 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-714 838 chr3L 4907983 4907988 chr3L 4908058 4908064 4 76 0.0 0.5 0.2 3.3 81 chr3L 4907983 intergenic not near genes chr3L 4908024 intergenic not near genes chr3L 4908064 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-714 839 chr3L 4930737 4930760 chr3L 4930814 4930837 10 76 2.5 1.5 2.0 3.3 100 chr3L 4930737 intron CR43627 - chr3L 4930787 intron CR43627 - chr3L 4930837 intron CR43627 - chr3L_10_4930001 chr3L_4930001 RAL-714 840 chr3L 5045462 5045481 chr3L 5050243 5050262 Doc 6 4781 1.5 1.5 1.5 2.4 4800 chr3L 5045462 intron Con - chr3L 5047862 intron Con - chr3L 5050262 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-714 841 chr3L 5104483 5104497 chr3L 5124617 5124631 4 20134 3.0 0.0 1.5 1.6 20148 chr3L 5104483 intergenic not near genes chr3L 5114557 intergenic not near genes chr3L 5124631 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-714 842 chr3L 5327465 5327477 chr3L 5327550 5327562 5 84 3.0 1.5 2.2 1.6 97 chr3L 5327465 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327562 intergenic not near genes chr3L_5_5325001 chr3L_5325001 RAL-714 843 chr3L 5396273 5396489 chr3L 5396362 5396576 8 88 0.5 0.5 0.5 5.3 303 chr3L 5396273 intergenic not near genes chr3L 5396424 intergenic not near genes chr3L 5396576 intergenic not near genes chr3L_8_5395001 chr3L_5395001 RAL-714 844 chr3L 5522108 5522130 chr3L 5522694 5522716 9 585 3.5 2.0 2.8 2.4 608 chr3L 5522108 intron Lkr - chr3L 5522412 intron Lkr - chr3L 5522716 intron Lkr - chr3L_9_5520001 chr3L_5520001 RAL-714 845 chr3L 5537719 5537758 chr3L 5538061 5538096 jockey 10 341 2.0 1.0 1.5 4.0 377 chr3L 5537719 intergenic not near genes chr3L 5537908 intergenic not near genes chr3L 5538096 intergenic CG10625 - chr3L_10_5535001 chr3L_5535001 RAL-714 846 chr3L 5750042 5750062 chr3L 5750121 5750141 5 79 1.0 1.5 1.2 2.3 99 chr3L 5750042 3` UTR DnaJ-1 - chr3L 5750092 3` UTR DnaJ-1 - chr3L 5750141 3` UTR DnaJ-1 - chr3L_5_5750001 chr3L_5750001 RAL-714 847 chr3L 5908085 5908106 chr3L 5908165 5908186 8 80 3.5 0.0 1.8 2.9 101 chr3L 5908085 intron CG13288 + chr3L 5908136 intron CG13288 + chr3L 5908186 intron CG13288 + chr3L_8_5905001 chr3L_5905001 RAL-714 848 chr3L 5910031 5910061 chr3L 5910272 5910302 pogo 4 241 1.0 2.5 1.8 1.4 271 chr3L 5910031 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-714 849 chr3L 5926323 5926344 chr3L 5926510 5926534 BS 10 189 0.5 3.0 1.8 3.6 211 chr3L 5926323 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926534 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-714 850 chr3L 5992957 5992985 chr3L 5993206 5993234 5 249 1.0 2.0 1.5 2.0 277 chr3L 5992957 intergenic not near genes chr3L 5993096 intergenic not near genes chr3L 5993234 intergenic not near genes chr3L_5_5990001 chr3L_5990001 RAL-714 851 chr3L 6001685 6001714 chr3L 6004385 6004414 jockey 5 2700 3.5 0.0 1.8 1.8 2729 chr3L 6001685 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-714 852 chr3L 6040375 6040392 chr3L 6042731 6042748 Doc 5 2356 1.5 3.5 2.5 1.4 2373 chr3L 6040375 intergenic Jon65Aiv + chr3L 6041562 intergenic not near genes chr3L 6042748 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-714 853 chr3L 6052647 6052667 chr3L 6052732 6052751 10 84 10.5 10.0 10.2 0.9 104 chr3L 6052647 exon Jon65Aii + chr3L 6052699 intron Jon65Aii + chr3L 6052751 exon Jon65Aii + chr3L_10_6050001 chr3L_6050001 RAL-714 854 chr3L 6116695 6116727 chr3L 6116779 6116811 7 84 1.0 1.5 1.2 3.2 116 chr3L 6116695 intron Ets65A + chr3L 6116753 intron Ets65A + chr3L 6116811 intron Ets65A + chr3L_7_6115001 chr3L_6115001 RAL-714 855 chr3L 6159941 6159949 chr3L 6160021 6160029 4 80 1.0 0.0 0.5 2.7 88 chr3L 6159941 intergenic not near genes chr3L 6159985 intergenic not near genes chr3L 6160029 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-714 856 chr3L 6220917 6220946 chr3L 6230069 6230097 roo 9 9152 1.0 5.5 3.2 2.1 9180 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-714 857 chr3L 6284950 6284982 chr3L 6285044 6285076 6 94 1.5 2.0 1.8 2.1 126 chr3L 6284950 intergenic not near genes chr3L 6285013 intergenic not near genes chr3L 6285076 intergenic not near genes chr3L_6_6285001 chr3L_6285001 RAL-714 858 chr3L 6335008 6335042 chr3L 6335479 6335513 297 5 467 3.0 4.5 3.8 1.0 505 chr3L 6335008 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-714 859 chr3L 6405657 6405686 chr3L 6432121 6432148 roo 5 26464 2.5 1.5 2.0 1.7 26491 chr3L 6405657 intron CG42747 + chr3L 6418902 intron CG42747 + chr3L 6432148 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-714 860 chr3L 6442152 6442185 chr3L 6442371 6442399 4 216 20.5 17.0 18.8 0.2 247 chr3L 6442152 intron CG42747 + chr3L 6442276 intron CG42747 + chr3L 6442399 intron CG42747 + chr3L_4_6440001 chr3L_6440001 RAL-714 861 chr3L 6515637 6515665 chr3L 6515719 6515747 10 82 3.5 3.5 3.5 2.2 110 chr3L 6515637 intron sfl + chr3L 6515692 intron sfl + chr3L 6515747 intron sfl + chr3L_10_6515001 chr3L_6515001 RAL-714 862 chr3L 6775022 6775035 chr3L 6775121 6775134 6 99 4.5 1.0 2.8 1.6 112 chr3L 6775022 intergenic not near genes chr3L 6775078 intergenic not near genes chr3L 6775134 intergenic not near genes chr3L_6_6775001 chr3L_6775001 RAL-714 863 chr3L 6887515 6887551 chr3L 6895007 6895043 roo 9 7492 3.0 4.0 3.5 2.0 7528 chr3L 6887515 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-714 864 chr3L 6937223 6937249 chr3L 6937337 6937360 11 114 3.0 2.0 2.5 3.1 137 chr3L 6937223 5` UTR CR45414 + chr3L 6937292 5` UTR CR45414 + chr3L 6937360 5` UTR CR45414 + chr3L_11_6935001 chr3L_6935001 RAL-714 865 chr3L 6974505 6974519 chr3L 6974606 6974618 5 100 0.0 3.0 1.5 2.0 113 chr3L 6974505 intron Galphai - chr3L 6974562 intron Galphai - chr3L 6974618 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-714 866 chr3L 6994889 6994896 chr3L 6995499 6995502 BS 5 610 0.0 1.0 0.5 3.3 613 chr3L 6994889 intergenic bin + chr3L 6995196 intergenic not near genes chr3L 6995502 intergenic not near genes chr3L_5_6995001 chr3L_6995001 RAL-714 867 chr3L 7090924 7090945 chr3L 7091008 7091029 4 83 0.5 3.5 2.0 1.3 105 chr3L 7090924 intergenic not near genes chr3L 7090976 intergenic not near genes chr3L 7091029 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-714 868 chr3L 7091532 7091557 chr3L 7091608 7091632 5 76 2.5 2.5 2.5 1.4 100 chr3L 7091532 intergenic not near genes chr3L 7091582 intergenic not near genes chr3L 7091632 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-714 869 chr3L 7277109 7277138 chr3L 7277211 7277240 6 102 0.5 1.0 0.8 3.3 131 chr3L 7277109 exon unc-13-4A - chr3L 7277174 intron unc-13-4A - chr3L 7277240 intron unc-13-4A - chr3L_6_7275001 chr3L_7275001 RAL-714 870 chr3L 7377317 7377348 chr3L 7380422 7380453 297 7 3105 1.0 3.0 2.0 2.3 3136 chr3L 7377317 intron SMSr - chr3L 7378885 intron SMSr - chr3L 7380453 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-714 871 chr3L 7460373 7460391 chr3L 7460457 7460470 7 83 2.0 1.0 1.5 2.8 97 chr3L 7460373 intergenic not near genes chr3L 7460422 intergenic not near genes chr3L 7460470 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-714 872 chr3L 7574853 7574860 chr3L 7574930 7574937 4 77 0.0 0.0 0.0 4.0 84 chr3L 7574853 intergenic not near genes chr3L 7574895 intergenic not near genes chr3L 7574937 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-714 873 chr3L 7591152 7591180 chr3L 7591243 7591254 5 86 2.5 2.0 2.2 1.6 102 chr3L 7591152 intergenic CG7716 - chr3L 7591203 intergenic CG7716 - chr3L 7591254 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-714 874 chr3L 7710953 7710977 chr3L 7711125 7711147 11 172 1.0 1.5 1.2 5.0 194 chr3L 7710953 intron,exon CG32373 +,Ank2 - chr3L 7711050 intron,intron CG32373 +,Ank2 - chr3L 7711147 intron,intron CG32373 +,Ank2 - chr3L_11_7710001 chr3L_7710001 RAL-714 875 chr3L 7743712 7743739 chr3L 7743817 7743845 5 105 3.0 1.0 2.0 1.7 133 chr3L 7743712 intron CG32373 + chr3L 7743778 intron CG32373 + chr3L 7743845 intron CG32373 + chr3L_5_7740001 chr3L_7740001 RAL-714 876 chr3L 7793714 7793741 chr3L 7800764 7800793 297 9 7050 2.0 3.0 2.5 2.6 7079 chr3L 7793714 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-714 877 chr3L 7886519 7886539 chr3L 7889037 7889057 Stalker4 5 2518 1.5 4.5 3.0 1.2 2538 chr3L 7886519 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889057 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-714 878 chr3L 7916830 7916861 chr3L 7926001 7926032 roo 5 9170 3.5 1.5 2.5 1.4 9202 chr3L 7916830 3` UTR syd - chr3L 7921431 intron syd - chr3L 7926032 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-714 879 chr3L 7985365 7985393 chr3L 7987692 7987721 NOF 8 2327 3.5 2.5 3.0 2.0 2356 chr3L 7985365 intron nmo + chr3L 7986543 intron nmo + chr3L 7987721 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-714 880 chr3L 8265945 8265967 chr3L 8266031 8266053 4 86 4.5 1.0 2.8 1.1 108 chr3L 8265945 exon Dscam4 + chr3L 8265999 intron Dscam4 + chr3L 8266053 intron Dscam4 + chr3L_4_8265001 chr3L_8265001 RAL-714 881 chr3L 8295790 8295824 chr3L 8295948 8295982 11 158 3.0 0.5 1.8 3.9 192 chr3L 8295790 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295982 intergenic not near genes chr3L_11_8295001 chr3L_8295001 RAL-714 882 chr3L 8317596 8317596 chr3L 22908066 22908066 5 14590470 0.0 11.0 5.5 0.8 14590470 chr3L 8317596 intergenic not near genes chr3L 15612831 intergenic CG13449 -,comm3 - chr3L 22908066 intergenic not near genes chr3L_5_15610001 chr3L_15610001 RAL-714 883 chr3L 8481772 8481805 chr3L 8490931 8490942 roo 5 9145 3.0 4.5 3.8 1.0 9170 chr3L 8481772 intron CG43163 - chr3L 8486357 intron CG43163 - chr3L 8490942 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-714 884 chr3L 8498309 8498325 chr3L 8505776 8505791 blood 4 7467 1.0 4.5 2.8 1.1 7482 chr3L 8498309 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505791 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-714 885 chr3L 8791277 8791285 chr3L 8796697 8796705 I-element 4 5420 6.5 0.0 3.2 1.0 5428 chr3L 8791277 exon Fhos + chr3L 8793991 intron Fhos + chr3L 8796705 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-714 886 chr3L 8824571 8824605 chr3L 8824658 8824688 12 86 3.0 4.0 3.5 2.7 117 chr3L 8824571 intergenic not near genes chr3L 8824630 intergenic not near genes chr3L 8824688 intergenic not near genes chr3L_12_8820001 chr3L_8820001 RAL-714 887 chr3L 8831786 8831821 chr3L 8831867 8831902 7 81 1.0 2.5 1.8 2.5 116 chr3L 8831786 intron dally + chr3L 8831844 intron dally + chr3L 8831902 intron dally + chr3L_7_8830001 chr3L_8830001 RAL-714 888 chr3L 8839726 8839749 chr3L 8839806 8839829 8 80 2.0 1.5 1.8 2.9 103 chr3L 8839726 intron dally + chr3L 8839778 intron dally + chr3L 8839829 intron dally + chr3L_8_8835001 chr3L_8835001 RAL-714 889 chr3L 8861525 8861545 chr3L 8861616 8861636 8 91 0.0 1.5 0.8 4.4 111 chr3L 8861525 intron dally + chr3L 8861580 intron dally + chr3L 8861636 intron dally + chr3L_8_8860001 chr3L_8860001 RAL-714 890 chr3L 8928269 8928284 chr3L 8928345 8928355 4 75 2.5 0.0 1.2 1.8 86 chr3L 8928269 intron Tsp66E + chr3L 8928312 intron Tsp66E + chr3L 8928355 intron Tsp66E + chr3L_4_8925001 chr3L_8925001 RAL-714 891 chr3L 8949400 8949508 chr3L 8949495 8949589 10 91 0.0 0.0 0.0 10.0 189 chr3L 8949400 intron,intron CG43783 -,orb2 - chr3L 8949494 intron,intron CG43783 -,orb2 - chr3L 8949589 intron,intron CG43783 -,orb2 - chr3L_10_8945001 chr3L_8945001 RAL-714 892 chr3L 9003944 9003975 chr3L 9004029 9004059 9 84 1.5 3.5 2.5 2.6 115 chr3L 9003944 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004059 intergenic not near genes chr3L_9_9000001 chr3L_9000001 RAL-714 893 chr3L 9009958 9009976 chr3L 9010062 9010080 4 104 2.0 2.5 2.2 1.2 122 chr3L 9009958 intergenic CG5194 - chr3L 9010019 intergenic CG5194 - chr3L 9010080 intergenic CG5194 - chr3L_4_9010001 chr3L_9010001 RAL-714 894 chr3L 9009775 9009797 chr3L 9010094 9010116 5 319 7.5 4.5 6.0 0.7 341 chr3L 9009775 5` UTR CG5194 - chr3L 9009946 intergenic CG5194 - chr3L 9010116 intergenic CG5194 - chr3L_5_9005001 chr3L_9005001 RAL-714 895 chr3L 9076927 9076958 chr3L 9084487 9084513 412 11 7560 4.5 6.0 5.2 1.8 7586 chr3L 9076927 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084513 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-714 896 chr3L 9115249 9115258 chr3L 9115332 9115341 4 82 1.5 2.0 1.8 1.4 92 chr3L 9115249 intron bol - chr3L 9115295 intron bol - chr3L 9115341 intron bol - chr3L_4_9115001 chr3L_9115001 RAL-714 897 chr3L 9128201 9128215 chr3L 9128286 9128300 7 85 2.0 2.5 2.2 2.2 99 chr3L 9128201 intron bol - chr3L 9128250 intron bol - chr3L 9128300 intron bol - chr3L_7_9125001 chr3L_9125001 RAL-714 898 chr3L 9130562 9130580 chr3L 9134321 9134338 412 6 3760 5.0 4.5 4.8 1.0 3776 chr3L 9130562 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134338 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-714 899 chr3L 9164697 9164727 chr3L 9166164 9166194 hobo 5 1467 3.0 1.5 2.2 1.6 1497 chr3L 9164697 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166194 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-714 900 chr3L 9191881 9191908 chr3L 9191968 9191996 10 88 4.0 3.5 3.8 2.1 115 chr3L 9191881 intergenic not near genes chr3L 9191938 intergenic not near genes chr3L 9191996 intergenic not near genes chr3L_10_9190001 chr3L_9190001 RAL-714 901 chr3L 9219244 9219275 chr3L 9219916 9219947 jockey 9 671 3.0 1.0 2.0 3.0 703 chr3L 9219244 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219947 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-714 902 chr3L 9307796 9307796 chr3L 22908066 22908066 4 13600270 11.0 11.0 11.0 0.3 13600270 chr3L 9307796 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-714 903 chr3L 9443507 9443536 chr3L 9445298 9445326 S-element 9 1790 4.0 1.0 2.5 2.6 1819 chr3L 9443507 intron CG33926 + chr3L 9444416 intron CG33926 + chr3L 9445326 intron CG33926 + chr3L_9_9440001 chr3L_9440001 RAL-714 904 chr3L 9502614 9502627 chr3L 9502694 9502706 4 80 2.5 2.0 2.2 1.2 92 chr3L 9502614 intron path - chr3L 9502660 intron path - chr3L 9502706 intron path - chr3L_4_9500001 chr3L_9500001 RAL-714 905 chr3L 9510946 9510958 chr3L 9511003 9511037 5 70 0.0 3.5 1.8 1.8 91 chr3L 9510946 intron RpS9 - chr3L 9510992 intron RpS9 - chr3L 9511037 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-714 906 chr3L 9524039 9524066 chr3L 9524115 9524146 7 79 1.0 4.5 2.8 1.8 107 chr3L 9524039 intron CG33700 - chr3L 9524092 intron CG33700 - chr3L 9524146 intron CG33700 - chr3L_7_9520001 chr3L_9520001 RAL-714 907 chr3L 9571905 9571931 chr3L 9572252 9572279 jockey 9 348 2.5 3.0 2.8 2.4 374 chr3L 9571905 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572279 intron CG42673 + chr3L_9_9570001 chr3L_9570001 RAL-714 908 chr3L 9575908 9575942 chr3L 9580985 9581021 jockey 15 5077 2.5 1.5 2.0 5.0 5113 chr3L 9575908 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581021 intron CG42673 + chr3L_15_9575001 chr3L_9575001 RAL-714 909 chr3L 9583682 9583707 chr3L 9583785 9583810 6 103 1.0 2.0 1.5 2.4 128 chr3L 9583682 intron CG42673 + chr3L 9583746 intron CG42673 + chr3L 9583810 intron CG42673 + chr3L_6_9580001 chr3L_9580001 RAL-714 910 chr3L 9584392 9584421 chr3L 9584474 9584503 6 82 3.0 0.5 1.8 2.1 111 chr3L 9584392 intron CG42673 + chr3L 9584448 intron CG42673 + chr3L 9584503 intron CG42673 + chr3L_6_9580001 chr3L_9580001 RAL-714 911 chr3L 9646814 9646843 chr3L 9646912 9646941 6 98 1.0 0.5 0.8 3.3 127 chr3L 9646814 intron,intron fry -,CG33696 + chr3L 9646878 intron,intron fry -,CG33696 + chr3L 9646941 intron,intron fry -,CG33696 + chr3L_6_9645001 chr3L_9645001 RAL-714 912 chr3L 9757836 9757851 chr3L 9758321 9758336 4 485 3.0 0.0 1.5 1.6 500 chr3L 9757836 intron CG42268 - chr3L 9758086 intron CG42268 - chr3L 9758336 intron CG42268 - chr3L_4_9755001 chr3L_9755001 RAL-714 913 chr3L 9775382 9775389 chr3L 9775742 9775749 5 360 0.0 3.0 1.5 2.0 367 chr3L 9775382 intron CG8177 + chr3L 9775566 intron CG8177 + chr3L 9775749 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-714 914 chr3L 9809734 9809745 chr3L 9809809 9809822 4 76 4.0 6.5 5.2 0.6 88 chr3L 9809734 intergenic not near genes chr3L 9809778 intergenic not near genes chr3L 9809822 intergenic not near genes chr3L_4_9805001 chr3L_9805001 RAL-714 915 chr3L 9929675 9929700 chr3L 9938455 9938480 roo 9 8779 3.0 5.0 4.0 1.8 8805 chr3L 9929675 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938480 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-714 916 chr3L 9940496 9940512 chr3L 9940607 9940610 5 109 2.5 0.0 1.2 2.3 114 chr3L 9940496 intron CG34356 + chr3L 9940553 intron CG34356 + chr3L 9940610 intron CG34356 + chr3L_5_9940001 chr3L_9940001 RAL-714 917 chr3L 10003150 10003180 chr3L 10003247 10003277 8 96 2.0 2.5 2.2 2.5 127 chr3L 10003150 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003277 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-714 918 chr3L 10032552 10032566 chr3L 10032639 10032653 4 87 0.0 1.0 0.5 2.7 101 chr3L 10032552 intron dpr6 + chr3L 10032602 intron dpr6 + chr3L 10032653 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-714 919 chr3L 10148409 10148426 chr3L 10148495 10148512 6 86 2.0 2.5 2.2 1.9 103 chr3L 10148409 3` UTR dpr10 - chr3L 10148460 3` UTR dpr10 - chr3L 10148512 3` UTR dpr10 - chr3L_6_10145001 chr3L_10145001 RAL-714 920 chr3L 10161435 10161454 chr3L 10161512 10161531 4 77 0.0 3.0 1.5 1.6 96 chr3L 10161435 intron dpr10 - chr3L 10161483 intron dpr10 - chr3L 10161531 intron dpr10 - chr3L_4_10160001 chr3L_10160001 RAL-714 921 chr3L 10214730 10214817 chr3L 10214817 10214919 5 93 0.0 0.0 0.0 5.0 189 chr3L 10214730 intergenic not near genes chr3L 10214824 intergenic not near genes chr3L 10214919 intergenic not near genes chr3L_5_10210001 chr3L_10210001 RAL-714 922 chr3L 10248966 10249127 chr3L 10249044 10249204 11 77 0.0 0.0 0.0 11.0 238 chr3L 10248966 intergenic CR44540 - chr3L 10249085 intergenic CR44540 - chr3L 10249204 intergenic not near genes chr3L_11_10245001 chr3L_10245001 RAL-714 923 chr3L 10308737 10308773 chr3L 10308814 10308850 11 76 3.0 1.5 2.2 3.4 113 chr3L 10308737 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308850 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-714 924 chr3L 10310351 10310374 chr3L 10310448 10310471 4 97 2.0 1.5 1.8 1.4 120 chr3L 10310351 intergenic not near genes chr3L 10310411 intergenic not near genes chr3L 10310471 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-714 925 chr3L 10348655 10348673 chr3L 10348772 10348785 5 116 1.0 0.0 0.5 3.3 130 chr3L 10348655 intron CR44327 + chr3L 10348720 intron CR44327 + chr3L 10348785 intron CR44327 + chr3L_5_10345001 chr3L_10345001 RAL-714 926 chr3L 10386390 10386408 chr3L 10386467 10386483 5 74 4.0 2.5 3.2 1.2 93 chr3L 10386390 intergenic CR45245 + chr3L 10386436 intergenic CR45245 + chr3L 10386483 5` UTR CR45245 + chr3L_5_10385001 chr3L_10385001 RAL-714 927 chr3L 10414943 10414977 chr3L 10417315 10417349 Doc 10 2368 0.5 1.0 0.8 5.6 2406 chr3L 10414943 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-714 928 chr3L 10417568 10417603 chr3L 10417645 10417678 15 76 2.0 2.0 2.0 5.0 110 chr3L 10417568 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_15_10415001 chr3L_10415001 RAL-714 929 chr3L 10455799 10455832 chr3L 10455924 10455957 11 125 1.0 0.5 0.8 6.1 158 chr3L 10455799 intergenic not near genes chr3L 10455878 intergenic not near genes chr3L 10455957 intergenic not near genes chr3L_11_10455001 chr3L_10455001 RAL-714 930 chr3L 10469932 10469965 chr3L 10470008 10470041 5 76 3.0 3.0 3.0 1.2 109 chr3L 10469932 intergenic not near genes chr3L 10469986 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_5_10465001 chr3L_10465001 RAL-714 931 chr3L 10526636 10526652 chr3L 10526717 10526733 4 81 1.0 4.0 2.5 1.1 97 chr3L 10526636 intron A2bp1 + chr3L 10526684 intron A2bp1 + chr3L 10526733 intron A2bp1 + chr3L_4_10525001 chr3L_10525001 RAL-714 932 chr3L 10611624 10611650 chr3L 10611728 10611754 4 104 0.0 0.0 0.0 4.0 130 chr3L 10611624 intergenic not near genes chr3L 10611689 intergenic not near genes chr3L 10611754 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-714 933 chr3L 10627438 10627464 chr3L 10627521 10627547 5 83 0.5 0.0 0.2 4.2 109 chr3L 10627438 3` UTR CG34238 + chr3L 10627492 intergenic CG34238 +,CG14151 - chr3L 10627547 intergenic CG34238 +,CG14151 - chr3L_5_10625001 chr3L_10625001 RAL-714 934 chr3L 10696373 10696408 chr3L 10696457 10696492 6 84 2.5 0.0 1.2 2.7 119 chr3L 10696373 intron NijA - chr3L 10696432 intron NijA - chr3L 10696492 intron NijA - chr3L_6_10695001 chr3L_10695001 RAL-714 935 chr3L 10746375 10746384 chr3L 10746453 10746468 4 82 2.0 5.5 3.8 0.8 93 chr3L 10746375 intergenic not near genes chr3L 10746422 intergenic not near genes chr3L 10746468 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-714 936 chr3L 11083501 11083537 chr3L 11083599 11083635 10 98 2.0 0.5 1.2 4.5 134 chr3L 11083501 intron JIL-1 - chr3L 11083568 intron JIL-1 - chr3L 11083635 intron JIL-1 - chr3L_10_11080001 chr3L_11080001 RAL-714 937 chr3L 11087060 11087086 chr3L 11088849 11088872 S-element 5 1788 4.0 0.0 2.0 1.7 1812 chr3L 11087060 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088872 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-714 938 chr3L 11105290 11105324 chr3L 11107001 11107023 X-element 9 1710 2.5 2.5 2.5 2.6 1733 chr3L 11105290 intergenic not near genes chr3L 11106156 intergenic not near genes chr3L 11107023 3` UTR CG32073 - chr3L_9_11105001 chr3L_11105001 RAL-714 939 chr3L 11121587 11121602 chr3L 11122995 11123030 18 1412 26.5 43.5 35.0 0.5 1443 chr3L 11121587 exon mRpL2 + chr3L 11122308 exon Ufd1-like - chr3L 11123030 exon Ufd1-like - chr3L_18_11120001 chr3L_11120001 RAL-714 940 chr3L 11123770 11123795 chr3L 11123849 11123875 7 79 1.5 4.0 2.8 1.8 105 chr3L 11123770 intron CG42575 + chr3L 11123822 intron CG42575 + chr3L 11123875 intron CG42575 + chr3L_7_11120001 chr3L_11120001 RAL-714 941 chr3L 11145550 11145557 chr3L 11145640 11145647 4 90 0.0 1.0 0.5 2.7 97 chr3L 11145550 intron CG32082 + chr3L 11145598 intron CG32082 + chr3L 11145647 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-714 942 chr3L 11157732 11157752 chr3L 11157851 11157870 5 119 3.0 1.0 2.0 1.7 138 chr3L 11157732 intron CG32082 + chr3L 11157801 intron CG32082 + chr3L 11157870 intron CG32082 + chr3L_5_11155001 chr3L_11155001 RAL-714 943 chr3L 11264462 11264496 chr3L 11271414 11271448 17.6 5 6952 1.5 0.5 1.0 2.5 6986 chr3L 11264462 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271448 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-714 944 chr3L 11277464 11277486 chr3L 11278457 11278481 Rt1a 11 994 1.5 3.5 2.5 3.1 1017 chr3L 11277464 intergenic not near genes chr3L 11277972 intergenic not near genes chr3L 11278481 intergenic not near genes chr3L_11_11275001 chr3L_11275001 RAL-714 945 chr3L 11329693 11329727 chr3L 11332897 11332932 jockey 5 3204 1.5 1.5 1.5 2.0 3239 chr3L 11329693 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332932 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-714 946 chr3L 11678102 11678117 chr3L 11678186 11678204 4 86 0.5 0.5 0.5 2.7 102 chr3L 11678102 intron CG32085 - chr3L 11678153 intron CG32085 - chr3L 11678204 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-714 947 chr3L 11723083 11723113 chr3L 11727877 11727908 Doc 7 4795 1.0 3.5 2.2 2.2 4825 chr3L 11723083 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-714 948 chr3L 11729676 11729701 chr3L 11729752 11729776 7 76 1.5 2.0 1.8 2.5 100 chr3L 11729676 exon CG32088 + chr3L 11729726 intron CG32088 + chr3L 11729776 exon CG32088 + chr3L_7_11725001 chr3L_11725001 RAL-714 949 chr3L 11744012 11744042 chr3L 11744119 11744149 13 108 5.0 0.0 2.5 3.7 137 chr3L 11744012 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_13_11740001 chr3L_11740001 RAL-714 950 chr3L 11760237 11760270 chr3L 11760313 11760345 8 76 2.5 3.0 2.8 2.1 108 chr3L 11760237 intron CG6024 - chr3L 11760291 intron CG6024 - chr3L 11760345 intron CG6024 - chr3L_8_11760001 chr3L_11760001 RAL-714 951 chr3L 11765421 11765450 chr3L 11765671 11765700 10 250 4.5 2.0 3.2 2.4 279 chr3L 11765421 intron CG6024 - chr3L 11765560 intron CG6024 - chr3L 11765700 5` UTR CG6024 - chr3L_10_11765001 chr3L_11765001 RAL-714 952 chr3L 11811455 11811481 chr3L 11811533 11811557 7 78 1.5 4.0 2.8 1.8 102 chr3L 11811455 intron CG42255 - chr3L 11811506 intron CG42255 - chr3L 11811557 exon CG42255 - chr3L_7_11810001 chr3L_11810001 RAL-714 953 chr3L 11816802 11816807 chr3L 11816903 11816904 4 100 2.5 6.0 4.2 0.8 102 chr3L 11816802 3` UTR CG5946 - chr3L 11816853 3` UTR CG5946 - chr3L 11816904 3` UTR CG5946 - chr3L_4_11815001 chr3L_11815001 RAL-714 954 chr3L 11816808 11816812 chr3L 11816898 11816913 4 96 2.0 5.0 3.5 0.9 105 chr3L 11816808 3` UTR CG5946 - chr3L 11816860 3` UTR CG5946 - chr3L 11816913 3` UTR CG5946 - chr3L_4_11815001 chr3L_11815001 RAL-714 955 chr3L 11849341 11849357 chr3L 11849440 11849457 5 99 2.0 2.0 2.0 1.7 116 chr3L 11849341 intergenic not near genes chr3L 11849399 intergenic not near genes chr3L 11849457 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-714 956 chr3L 11850143 11850170 chr3L 11850238 11850262 6 94 3.0 0.0 1.5 2.4 119 chr3L 11850143 intergenic not near genes chr3L 11850202 intergenic CG44837 - chr3L 11850262 intergenic CG44837 - chr3L_6_11850001 chr3L_11850001 RAL-714 957 chr3L 11864556 11864584 chr3L 11865851 11865879 pogo 6 1294 3.0 3.5 3.2 1.4 1323 chr3L 11864556 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865879 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-714 958 chr3L 11913153 11913165 chr3L 11913511 11913523 4 358 3.0 4.5 3.8 0.8 370 chr3L 11913153 intron CG44837 - chr3L 11913338 intron CG44837 - chr3L 11913523 intron CG44837 - chr3L_4_11910001 chr3L_11910001 RAL-714 959 chr3L 11943497 11943519 chr3L 11943598 11943619 4 100 0.5 1.5 1.0 2.0 122 chr3L 11943497 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-714 960 chr3L 12013913 12013937 chr3L 12014004 12014028 8 91 0.5 1.5 1.0 4.0 115 chr3L 12013913 intron rols - chr3L 12013970 intron rols - chr3L 12014028 intron rols - chr3L_8_12010001 chr3L_12010001 RAL-714 961 chr3L 12158505 12158523 chr3L 12158726 12158743 4 220 14.0 22.5 18.2 0.2 238 chr3L 12158505 intron CG9760 - chr3L 12158624 intron CG9760 - chr3L 12158743 intron CG9760 - chr3L_4_12155001 chr3L_12155001 RAL-714 962 chr3L 12158789 12158804 chr3L 12160259 12160274 5 1471 42.5 24.0 33.2 0.1 1485 chr3L 12158789 intron CG9760 - chr3L 12159532 exon CG9760 - chr3L 12160274 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-714 963 chr3L 12156429 12156459 chr3L 12160315 12160345 5 3886 15.5 25.5 20.5 0.2 3916 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158387 intron CG9760 - chr3L 12160345 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-714 964 chr3L 12253127 12253153 chr3L 12253800 12253826 9 671 1.5 4.0 2.8 2.4 699 chr3L 12253127 intron app - chr3L 12253476 intron app - chr3L 12253826 intron app - chr3L_9_12250001 chr3L_12250001 RAL-714 965 chr3L 12304100 12304114 chr3L 12304176 12304190 6 76 1.0 4.5 2.8 1.6 90 chr3L 12304100 intergenic not near genes chr3L 12304145 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-714 966 chr3L 12320743 12320748 chr3L 12320837 12320843 4 95 0.0 8.0 4.0 0.8 100 chr3L 12320743 intergenic not near genes chr3L 12320793 intergenic not near genes chr3L 12320843 intergenic not near genes chr3L_4_12320001 chr3L_12320001 RAL-714 967 chr3L 12320755 12320762 chr3L 12320836 12320856 4 86 0.0 7.5 3.8 0.8 101 chr3L 12320755 intergenic not near genes chr3L 12320806 intergenic not near genes chr3L 12320856 intergenic not near genes chr3L_4_12320001 chr3L_12320001 RAL-714 968 chr3L 12335386 12335413 chr3L 12335465 12335492 4 78 2.0 2.5 2.2 1.2 106 chr3L 12335386 exon CG32105 + chr3L 12335439 3` UTR CG32105 + chr3L 12335492 3` UTR CG32105 + chr3L_4_12335001 chr3L_12335001 RAL-714 969 chr3L 12352129 12352153 chr3L 12352230 12352254 5 100 3.5 8.0 5.8 0.7 125 chr3L 12352129 intergenic not near genes chr3L 12352192 intergenic not near genes chr3L 12352254 intergenic not near genes chr3L_5_12350001 chr3L_12350001 RAL-714 970 chr3L 12353932 12353953 chr3L 12354021 12354042 4 89 0.0 3.5 1.8 1.4 110 chr3L 12353932 intergenic not near genes chr3L 12353987 intergenic not near genes chr3L 12354042 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-714 971 chr3L 12369538 12369564 chr3L 12369628 12369653 8 90 1.5 1.0 1.2 3.6 115 chr3L 12369538 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369653 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-714 972 chr3L 12371097 12371104 chr3L 12371194 12371203 4 98 5.5 0.0 2.8 1.1 106 chr3L 12371097 intron Ncc69 - chr3L 12371150 intron Ncc69 - chr3L 12371203 intron Ncc69 - chr3L_4_12370001 chr3L_12370001 RAL-714 973 chr3L 12460324 12460344 chr3L 12460401 12460421 8 77 0.0 3.0 1.5 3.2 97 chr3L 12460324 intergenic not near genes chr3L 12460372 intergenic not near genes chr3L 12460421 intergenic not near genes chr3L_8_12460001 chr3L_12460001 RAL-714 974 chr3L 12720325 12720356 chr3L 12720410 12720440 5 85 2.0 2.5 2.2 1.6 115 chr3L 12720325 intergenic not near genes chr3L 12720382 intergenic not near genes chr3L 12720440 intergenic not near genes chr3L_5_12720001 chr3L_12720001 RAL-714 975 chr3L 12867551 12867559 chr3L 12867644 12867652 5 93 3.0 0.0 1.5 2.0 101 chr3L 12867551 intergenic not near genes chr3L 12867602 intergenic not near genes chr3L 12867652 intergenic not near genes chr3L_5_12865001 chr3L_12865001 RAL-714 976 chr3L 12874935 12874963 chr3L 12877226 12877255 jockey 10 2292 1.5 3.5 2.5 2.9 2320 chr3L 12874935 intergenic not near genes chr3L 12876095 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-714 977 chr3L 12894805 12894819 chr3L 12894876 12894896 5 76 4.0 6.5 5.2 0.8 91 chr3L 12894805 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-714 978 chr3L 12948040 12948048 chr3L 12948109 12948126 4 75 1.5 3.5 2.5 1.1 86 chr3L 12948040 intergenic not near genes chr3L 12948083 intergenic not near genes chr3L 12948126 intergenic not near genes chr3L_4_12945001 chr3L_12945001 RAL-714 979 chr3L 12957786 12957817 chr3L 12962267 12962297 copia 11 4481 1.0 1.5 1.2 5.0 4511 chr3L 12957786 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962297 intergenic not near genes chr3L_11_12960001 chr3L_12960001 RAL-714 980 chr3L 12968185 12968202 chr3L 12968269 12968287 9 84 3.5 4.0 3.8 1.9 102 chr3L 12968185 intergenic Or69a - chr3L 12968236 intergenic not near genes chr3L 12968287 intergenic not near genes chr3L_9_12965001 chr3L_12965001 RAL-714 981 chr3L 13007693 13007954 chr3L 13007772 13008053 10 85 0.5 2.0 1.2 4.5 360 chr3L 13007693 exon CG11263 + chr3L 13007873 3` UTR CG11263 + chr3L 13008053 intergenic CG11263 +,CG14117 + chr3L_10_13005001 chr3L_13005001 RAL-714 982 chr3L 13069561 13069588 chr3L 13069640 13069667 7 79 3.0 1.0 2.0 2.3 106 chr3L 13069561 intergenic not near genes chr3L 13069614 intergenic not near genes chr3L 13069667 intergenic not near genes chr3L_7_13065001 chr3L_13065001 RAL-714 983 chr3L 13206240 13206261 chr3L 13206322 13206343 6 82 3.5 2.0 2.8 1.6 103 chr3L 13206240 intergenic not near genes chr3L 13206292 intergenic not near genes chr3L 13206343 intergenic not near genes chr3L_6_13205001 chr3L_13205001 RAL-714 984 chr3L 13267284 13267307 chr3L 13267397 13267420 13 113 2.5 2.0 2.2 4.1 136 chr3L 13267284 intron caps + chr3L 13267352 intron caps + chr3L 13267420 intron caps + chr3L_13_13265001 chr3L_13265001 RAL-714 985 chr3L 13317020 13317040 chr3L 13317311 13317331 7 291 2.0 5.5 3.8 1.5 311 chr3L 13317020 intergenic not near genes chr3L 13317176 intergenic not near genes chr3L 13317331 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-714 986 chr3L 13525159 13525189 chr3L 13532955 13532985 roo 10 7796 3.5 2.5 3.0 2.5 7826 chr3L 13525159 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-714 987 chr3L 13629527 13629543 chr3L 13629638 13629654 4 110 2.5 5.0 3.8 0.8 127 chr3L 13629527 intron bru-3 - chr3L 13629590 intron bru-3 - chr3L 13629654 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-714 988 chr3L 13658854 13658879 chr3L 13658997 13659027 9 148 0.5 0.5 0.5 6.0 173 chr3L 13658854 intron bru-3 - chr3L 13658940 intron bru-3 - chr3L 13659027 intron bru-3 - chr3L_9_13655001 chr3L_13655001 RAL-714 989 chr3L 13677531 13677560 chr3L 13677608 13677637 5 77 1.0 1.5 1.2 2.3 106 chr3L 13677531 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677637 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-714 990 chr3L 13834334 13834345 chr3L 13834443 13834453 7 109 5.5 4.5 5.0 1.2 119 chr3L 13834334 intergenic not near genes chr3L 13834394 intergenic not near genes chr3L 13834453 intergenic not near genes chr3L_7_13830001 chr3L_13830001 RAL-714 991 chr3L 14006562 14006594 chr3L 14006645 14006677 13 83 2.5 3.5 3.0 3.2 115 chr3L 14006562 intron upSET + chr3L 14006620 intron upSET + chr3L 14006677 intron upSET + chr3L_13_14005001 chr3L_14005001 RAL-714 992 chr3L 14063052 14063084 chr3L 14063322 14063338 6 267 0.5 3.0 1.8 2.1 286 chr3L 14063052 intron CG32138 + chr3L 14063195 intron CG32138 + chr3L 14063338 intron CG32138 + chr3L_6_14060001 chr3L_14060001 RAL-714 993 chr3L 14245574 14245589 chr3L 14245667 14245674 1360 5 92 8.0 2.5 5.2 0.8 100 chr3L 14245574 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245674 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-714 994 chr3L 14295984 14296015 chr3L 14296470 14296488 roo 6 484 1.0 3.0 2.0 2.0 504 chr3L 14295984 intron fz + chr3L 14296236 intron fz + chr3L 14296488 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-714 995 chr3L 14312025 14312057 chr3L 14316832 14316836 X-element 7 4797 1.5 1.5 1.5 2.8 4811 chr3L 14312025 exon fz + chr3L 14314430 intron fz + chr3L 14316836 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-714 996 chr3L 14331461 14331477 chr3L 14331543 14331560 4 83 3.5 2.0 2.8 1.1 99 chr3L 14331461 intron fz + chr3L 14331510 intron fz + chr3L 14331560 intron fz + chr3L_4_14330001 chr3L_14330001 RAL-714 997 chr3L 14411863 14411897 chr3L 14411942 14411976 7 77 0.5 0.5 0.5 4.7 113 chr3L 14411863 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411976 intron CG3919 + chr3L_7_14410001 chr3L_14410001 RAL-714 998 chr3L 14425686 14425707 chr3L 14425771 14425792 6 85 1.0 5.0 3.0 1.5 106 chr3L 14425686 intron bbg - chr3L 14425739 intron bbg - chr3L 14425792 intron bbg - chr3L_6_14425001 chr3L_14425001 RAL-714 999 chr3L 14486004 14486026 chr3L 14486252 14486274 8 248 2.0 2.0 2.0 2.7 270 chr3L 14486004 intron bbg - chr3L 14486139 intron bbg - chr3L 14486274 intron bbg - chr3L_8_14485001 chr3L_14485001 RAL-714 1000 chr3L 14546612 14546814 chr3L 14546693 14546894 9 81 0.0 1.0 0.5 6.0 282 chr3L 14546612 intron CG9238 - chr3L 14546753 intron CG9238 - chr3L 14546894 intron CG9238 - chr3L_9_14545001 chr3L_14545001 RAL-714 1001 chr3L 14555910 14555938 chr3L 14555992 14556020 7 82 2.5 1.0 1.8 2.5 110 chr3L 14555910 intergenic not near genes chr3L 14555965 intergenic not near genes chr3L 14556020 intergenic not near genes chr3L_7_14555001 chr3L_14555001 RAL-714 1002 chr3L 14558233 14558248 chr3L 14558998 14559013 5 764 2.0 2.0 2.0 1.7 780 chr3L 14558233 intergenic not near genes chr3L 14558623 intergenic not near genes chr3L 14559013 intergenic not near genes chr3L_5_14555001 chr3L_14555001 RAL-714 1003 chr3L 14646962 14646986 chr3L 14647039 14647064 6 73 0.5 1.5 1.0 3.0 102 chr3L 14646962 intron dlp + chr3L 14647013 intron dlp + chr3L 14647064 intron dlp + chr3L_6_14645001 chr3L_14645001 RAL-714 1004 chr3L 14721183 14721208 chr3L 14723026 14723028 Rt1c 6 1839 4.5 4.5 4.5 1.1 1845 chr3L 14721183 intron ome + chr3L 14722106 intron ome + chr3L 14723028 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-714 1005 chr3L 14809417 14809439 chr3L 14809662 14809682 6 244 2.5 3.0 2.8 1.6 265 chr3L 14809417 intron CG17839 + chr3L 14809550 intron CG17839 + chr3L 14809682 intron CG17839 + chr3L_6_14805001 chr3L_14805001 RAL-714 1006 chr3L 14861802 14861812 chr3L 14861882 14861892 4 80 3.5 2.5 3.0 1.0 90 chr3L 14861802 intron CG17839 + chr3L 14861847 intron CG17839 + chr3L 14861892 intron CG17839 + chr3L_4_14860001 chr3L_14860001 RAL-714 1007 chr3L 14913908 14913923 chr3L 14913985 14914000 4 76 3.0 0.0 1.5 1.6 92 chr3L 14913908 intron DCX-EMAP + chr3L 14913954 intron DCX-EMAP + chr3L 14914000 intron DCX-EMAP + chr3L_4_14910001 chr3L_14910001 RAL-714 1008 chr3L 15062170 15062196 chr3L 15062264 15062290 6 94 2.5 3.5 3.0 1.5 120 chr3L 15062170 intron Sytbeta - chr3L 15062230 intron,3` UTR Sytbeta -,CR43684 - chr3L 15062290 intron,3` UTR Sytbeta -,CR43684 - chr3L_6_15060001 chr3L_15060001 RAL-714 1009 chr3L 15069794 15069813 chr3L 15069934 15069937 17 141 15.0 17.5 16.2 1.0 143 chr3L 15069794 exon cp309 - chr3L 15069866 intron cp309 - chr3L 15069937 exon cp309 - chr3L_17_15065001 chr3L_15065001 RAL-714 1010 chr3L 15070110 15070117 chr3L 15070334 15070341 4 224 68.5 138.5 103.5 0.0 231 chr3L 15070110 exon cp309 - chr3L 15070226 exon cp309 - chr3L 15070341 exon cp309 - chr3L_4_15070001 chr3L_15070001 RAL-714 1011 chr3L 15085052 15085078 chr3L 15086218 15086244 1360 6 1165 0.5 2.5 1.5 2.4 1192 chr3L 15085052 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086244 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-714 1012 chr3L 15233549 15233581 chr3L 15233630 15233662 7 81 1.0 1.5 1.2 3.2 113 chr3L 15233549 intergenic not near genes chr3L 15233606 intergenic not near genes chr3L 15233662 intergenic not near genes chr3L_7_15230001 chr3L_15230001 RAL-714 1013 chr3L 15286748 15286772 chr3L 15286829 15286853 5 81 0.5 1.5 1.0 2.5 105 chr3L 15286748 intergenic not near genes chr3L 15286800 intergenic not near genes chr3L 15286853 intergenic not near genes chr3L_5_15285001 chr3L_15285001 RAL-714 1014 chr3L 15295766 15295801 chr3L 15298609 15298644 gypsy5 12 2843 3.0 1.5 2.2 3.8 2878 chr3L 15295766 intergenic not near genes chr3L 15297205 intergenic not near genes chr3L 15298644 intergenic Best4 + chr3L_12_15295001 chr3L_15295001 RAL-714 1015 chr3L 15327217 15327246 chr3L 15327293 15327322 5 76 1.0 2.0 1.5 2.0 105 chr3L 15327217 intergenic not near genes chr3L 15327270 intergenic not near genes chr3L 15327322 intergenic not near genes chr3L_5_15325001 chr3L_15325001 RAL-714 1016 chr3L 15348111 15348140 chr3L 15348269 15348298 9 158 1.5 2.5 2.0 3.0 187 chr3L 15348111 intergenic not near genes chr3L 15348204 intergenic not near genes chr3L 15348298 intergenic not near genes chr3L_9_15345001 chr3L_15345001 RAL-714 1017 chr3L 15482426 15482439 chr3L 15482514 15482531 5 91 2.0 2.0 2.0 1.7 105 chr3L 15482426 intergenic not near genes chr3L 15482478 intergenic not near genes chr3L 15482531 intergenic not near genes chr3L_5_15480001 chr3L_15480001 RAL-714 1018 chr3L 15679179 15679198 chr3L 15679511 15679530 4 332 1.5 2.5 2.0 1.3 351 chr3L 15679179 intergenic not near genes chr3L 15679354 intergenic CG7304 + chr3L 15679530 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 RAL-714 1019 chr3L 15754582 15754617 chr3L 15754665 15754700 6 83 0.0 4.5 2.2 1.9 118 chr3L 15754582 intergenic not near genes chr3L 15754641 intergenic not near genes chr3L 15754700 intergenic not near genes chr3L_6_15750001 chr3L_15750001 RAL-714 1020 chr3L 15769414 15769439 chr3L 15769495 15769519 8 81 0.5 3.5 2.0 2.7 105 chr3L 15769414 intergenic not near genes chr3L 15769466 intergenic not near genes chr3L 15769519 intergenic not near genes chr3L_8_15765001 chr3L_15765001 RAL-714 1021 chr3L 15832259 15832277 chr3L 15832340 15832358 7 81 3.0 2.5 2.8 1.8 99 chr3L 15832259 intergenic CG12713 +,dbo + chr3L 15832308 intergenic CG12713 +,dbo + chr3L 15832358 intergenic CG12713 +,dbo + chr3L_7_15830001 chr3L_15830001 RAL-714 1022 chr3L 15899249 15899261 chr3L 15899792 15899827 jockey 6 555 1.0 4.0 2.5 1.7 578 chr3L 15899249 intergenic pHCl - chr3L 15899538 intergenic not near genes chr3L 15899827 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-714 1023 chr3L 15929195 15929228 chr3L 15938342 15938375 roo 4 9147 2.0 0.5 1.2 1.8 9180 chr3L 15929195 intron Pka-C3 - chr3L 15933785 intron Pka-C3 - chr3L 15938375 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-714 1024 chr3L 15944587 15944609 chr3L 15944661 15944685 6 76 1.5 0.5 1.0 3.0 98 chr3L 15944587 intron Pka-C3 - chr3L 15944636 intron Pka-C3 - chr3L 15944685 intron Pka-C3 - chr3L_6_15940001 chr3L_15940001 RAL-714 1025 chr3L 15946505 15946513 chr3L 15946591 15946599 4 86 6.0 0.0 3.0 1.0 94 chr3L 15946505 intron Pka-C3 - chr3L 15946552 intron Pka-C3 - chr3L 15946599 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-714 1026 chr3L 16162603 16162624 chr3L 16162687 16162702 7 83 0.5 3.5 2.0 2.3 99 chr3L 16162603 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162702 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-714 1027 chr3L 16184105 16184139 chr3L 16188924 16188957 X-element 6 4819 0.5 1.5 1.0 3.0 4852 chr3L 16184105 intergenic not near genes chr3L 16186531 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-714 1028 chr3L 16298477 16298507 chr3L 16298554 16298581 8 75 3.0 2.5 2.8 2.1 104 chr3L 16298477 intergenic not near genes chr3L 16298529 intergenic not near genes chr3L 16298581 intergenic not near genes chr3L_8_16295001 chr3L_16295001 RAL-714 1029 chr3L 16309358 16309371 chr3L 16309763 16309776 5 405 6.0 0.5 3.2 1.2 418 chr3L 16309358 5` UTR CR32160 + chr3L 16309567 intron CR32160 + chr3L 16309776 5` UTR CR32160 + chr3L_5_16305001 chr3L_16305001 RAL-714 1030 chr3L 16387987 16387989 chr3L 16388068 16388075 5 84 2.0 3.5 2.8 1.3 88 chr3L 16387987 exon RAF2 + chr3L 16388031 exon RAF2 + chr3L 16388075 exon RAF2 + chr3L_5_16385001 chr3L_16385001 RAL-714 1031 chr3L 16387991 16388000 chr3L 16388620 16388623 4 627 2.0 20.0 11.0 0.3 632 chr3L 16387991 exon RAF2 + chr3L 16388307 exon RAF2 + chr3L 16388623 exon RAF2 + chr3L_4_16385001 chr3L_16385001 RAL-714 1032 chr3L 16388006 16388017 chr3L 16388073 16388103 8 83 1.5 5.0 3.2 1.9 97 chr3L 16388006 exon RAF2 + chr3L 16388054 exon RAF2 + chr3L 16388103 exon RAF2 + chr3L_8_16385001 chr3L_16385001 RAL-714 1033 chr3L 16493978 16493997 chr3L 16494495 16494514 jockey 6 517 4.5 4.0 4.2 1.2 536 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494246 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494514 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-714 1034 chr3L 16540053 16540087 chr3L 16540140 16540175 5 88 0.5 1.5 1.0 2.5 122 chr3L 16540053 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540175 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-714 1035 chr3L 16756782 16756815 chr3L 16756965 16756997 7 182 1.0 2.0 1.5 2.8 215 chr3L 16756782 intergenic not near genes chr3L 16756890 intergenic not near genes chr3L 16756997 intergenic not near genes chr3L_7_16755001 chr3L_16755001 RAL-714 1036 chr3L 16808056 16808070 chr3L 16808132 16808146 5 76 1.0 0.0 0.5 3.3 90 chr3L 16808056 intron nudC + chr3L 16808101 intron nudC + chr3L 16808146 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-714 1037 chr3L 16838999 16839032 chr3L 16839208 16839234 7 208 2.0 3.5 2.8 1.8 235 chr3L 16838999 intergenic not near genes chr3L 16839116 intergenic not near genes chr3L 16839234 intergenic not near genes chr3L_7_16835001 chr3L_16835001 RAL-714 1038 chr3L 16845022 16845042 chr3L 16845134 16845155 7 112 3.0 2.0 2.5 2.0 133 chr3L 16845022 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845155 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 RAL-714 1039 chr3L 16873339 16873364 chr3L 16873444 16873469 4 105 1.5 3.0 2.2 1.2 130 chr3L 16873339 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873469 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-714 1040 chr3L 16874553 16874566 chr3L 16874714 16874727 5 160 1.0 6.5 3.8 1.0 174 chr3L 16874553 intron Lmpt + chr3L 16874640 intron Lmpt + chr3L 16874727 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-714 1041 chr3L 16941405 16941419 chr3L 16941506 16941519 5 101 1.5 0.0 0.8 2.8 114 chr3L 16941405 intron Cpr73D - chr3L 16941462 intron Cpr73D - chr3L 16941519 intron Cpr73D - chr3L_5_16940001 chr3L_16940001 RAL-714 1042 chr3L 16945732 16945759 chr3L 16954885 16954912 roo 9 9151 5.0 0.5 2.8 2.4 9180 chr3L 16945732 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-714 1043 chr3L 17026796 17026823 chr3L 17026875 17026904 11 81 3.0 2.0 2.5 3.1 108 chr3L 17026796 exon Fit2 + chr3L 17026850 3` UTR Fit2 + chr3L 17026904 3` UTR Fit2 + chr3L_11_17025001 chr3L_17025001 RAL-714 1044 chr3L 17067745 17067779 chr3L 17067877 17067911 9 132 3.5 0.0 1.8 3.2 166 chr3L 17067745 intron Rbp6 - chr3L 17067828 intron Rbp6 - chr3L 17067911 intron Rbp6 - chr3L_9_17065001 chr3L_17065001 RAL-714 1045 chr3L 17085017 17085033 chr3L 17094165 17094182 roo 6 9149 4.0 2.0 3.0 1.5 9165 chr3L 17085017 intron Rbp6 - chr3L 17089600 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-714 1046 chr3L 17309075 17309107 chr3L 17309157 17309184 14 81 0.5 5.0 2.8 3.7 109 chr3L 17309075 intergenic not near genes chr3L 17309130 intergenic not near genes chr3L 17309184 intergenic not near genes chr3L_14_17305001 chr3L_17305001 RAL-714 1047 chr3L 17367438 17367458 chr3L 17367532 17367552 4 94 1.0 2.5 1.8 1.4 114 chr3L 17367438 intergenic CR45688 +,Cad74A - chr3L 17367495 intergenic CR45688 +,Cad74A - chr3L 17367552 intergenic CR45688 +,Cad74A - chr3L_4_17365001 chr3L_17365001 RAL-714 1048 chr3L 17408920 17408928 chr3L 17408996 17409004 4 76 0.5 2.5 1.5 1.6 84 chr3L 17408920 intron blot - chr3L 17408962 intron blot - chr3L 17409004 intron blot - chr3L_4_17405001 chr3L_17405001 RAL-714 1049 chr3L 17510749 17510764 chr3L 17510819 17510848 7 81 5.0 4.0 4.5 1.3 99 chr3L 17510749 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-714 1050 chr3L 17516982 17516999 chr3L 17524540 17524557 412 4 7556 3.5 4.0 3.8 0.8 7575 chr3L 17516982 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524557 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-714 1051 chr3L 17517002 17517011 chr3L 17524539 17524567 412 4 7552 2.5 3.5 3.0 1.0 7565 chr3L 17517002 intron CG7564 + chr3L 17520784 intron CG7564 + chr3L 17524567 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-714 1052 chr3L 17538341 17538369 chr3L 17538422 17538447 6 75 3.0 2.5 2.8 1.6 106 chr3L 17538341 intron Nedd4 + chr3L 17538394 intron Nedd4 + chr3L 17538447 intron Nedd4 + chr3L_6_17535001 chr3L_17535001 RAL-714 1053 chr3L 17586973 17587002 chr3L 17587107 17587136 5 134 0.5 3.5 2.0 1.7 163 chr3L 17586973 intron Eip74EF - chr3L 17587054 intron Eip74EF - chr3L 17587136 intron Eip74EF - chr3L_5_17585001 chr3L_17585001 RAL-714 1054 chr3L 17730869 17730878 chr3L 17738199 17738205 mdg1 4 7329 1.0 3.0 2.0 1.3 7336 chr3L 17730869 intron Ccn + chr3L 17734537 intron Ccn + chr3L 17738205 intron Ccn + chr3L_4_17730001 chr3L_17730001 RAL-714 1055 chr3L 17790453 17790485 chr3L 17790594 17790625 7 140 3.5 0.0 1.8 2.5 172 chr3L 17790453 intergenic not near genes chr3L 17790539 intergenic not near genes chr3L 17790625 intergenic CG42815 - chr3L_7_17790001 chr3L_17790001 RAL-714 1056 chr3L 17799814 17799840 chr3L 17801601 17801627 S-element 5 1787 1.5 2.5 2.0 1.7 1813 chr3L 17799814 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801627 intron NUCB1 - chr3L_5_17800001 chr3L_17800001 RAL-714 1057 chr3L 17836210 17836238 chr3L 17836287 17836315 5 75 2.0 3.5 2.8 1.3 105 chr3L 17836210 intron Grd + chr3L 17836262 intron Grd + chr3L 17836315 intron Grd + chr3L_5_17835001 chr3L_17835001 RAL-714 1058 chr3L 17889006 17889038 chr3L 17889091 17889093 12 80 1.0 2.0 1.5 4.8 87 chr3L 17889006 intron CG7402 + chr3L 17889050 intron CG7402 + chr3L 17889093 intron CG7402 + chr3L_12_17885001 chr3L_17885001 RAL-714 1059 chr3L 17971613 17971644 chr3L 17971691 17971722 17 77 3.0 2.5 2.8 4.5 109 chr3L 17971613 intron Eip75B - chr3L 17971668 intron Eip75B - chr3L 17971722 intron Eip75B - chr3L_17_17970001 chr3L_17970001 RAL-714 1060 chr3L 17991584 17991589 chr3L 17991662 17991667 4 78 1.5 3.0 2.2 1.2 83 chr3L 17991584 intron Eip75B - chr3L 17991626 intron Eip75B - chr3L 17991667 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-714 1061 chr3L 18006222 18006255 chr3L 18006346 18006379 6 124 1.5 2.0 1.8 2.1 157 chr3L 18006222 intron Eip75B - chr3L 18006300 intron Eip75B - chr3L 18006379 intron Eip75B - chr3L_6_18005001 chr3L_18005001 RAL-714 1062 chr3L 18062485 18062500 chr3L 18062750 18062778 4 270 3.0 1.0 2.0 1.3 293 chr3L 18062485 intron Eip75B - chr3L 18062632 intron Eip75B - chr3L 18062778 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-714 1063 chr3L 18106262 18106281 chr3L 18106380 18106400 5 119 3.0 0.0 1.5 2.0 138 chr3L 18106262 intergenic CG13698 -,mRpS26 + chr3L 18106331 intergenic CG13698 -,mRpS26 + chr3L 18106400 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-714 1064 chr3L 18118213 18118240 chr3L 18118291 18118318 6 78 1.0 1.5 1.2 2.7 105 chr3L 18118213 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118318 3` UTR,intron CG32195 +,CG7341 + chr3L_6_18115001 chr3L_18115001 RAL-714 1065 chr3L 18150320 18150336 chr3L 18150417 18150433 5 97 2.0 1.5 1.8 1.8 113 chr3L 18150320 intron CG7330 + chr3L 18150376 intron CG7330 + chr3L 18150433 intron CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-714 1066 chr3L 18172690 18172696 chr3L 18172766 18172772 4 76 1.0 0.0 0.5 2.7 82 chr3L 18172690 intron W - chr3L 18172731 intron W - chr3L 18172772 intron W - chr3L_4_18170001 chr3L_18170001 RAL-714 1067 chr3L 18221098 18221129 chr3L 18221178 18221209 6 81 0.0 0.0 0.0 6.0 111 chr3L 18221098 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221209 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-714 1068 chr3L 18223177 18223188 chr3L 18223260 18223269 5 82 0.0 0.0 0.0 5.0 92 chr3L 18223177 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223269 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-714 1069 chr3L 18343672 18343683 chr3L 18343950 18343961 5 278 0.0 2.5 1.2 2.3 289 chr3L 18343672 intergenic not near genes chr3L 18343816 intergenic not near genes chr3L 18343961 intergenic not near genes chr3L_5_18340001 chr3L_18340001 RAL-714 1070 chr3L 18377207 18377231 chr3L 18377283 18377306 10 76 2.0 5.5 3.8 2.1 99 chr3L 18377207 intergenic not near genes chr3L 18377256 intergenic not near genes chr3L 18377306 intergenic not near genes chr3L_10_18375001 chr3L_18375001 RAL-714 1071 chr3L 18395933 18395967 chr3L 18396020 18396054 6 87 2.0 1.0 1.5 2.4 121 chr3L 18395933 intergenic not near genes chr3L 18395994 intergenic not near genes chr3L 18396054 intergenic not near genes chr3L_6_18395001 chr3L_18395001 RAL-714 1072 chr3L 9013689 9013695 chr3L 18417066 18417066 4 9403375 29.0 13.0 21.0 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-714 1073 chr3L 18436062 18436082 chr3L 18436160 18436180 4 98 0.0 1.0 0.5 2.7 118 chr3L 18436062 intergenic not near genes chr3L 18436121 intergenic not near genes chr3L 18436180 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-714 1074 chr3L 18456275 18456302 chr3L 18456363 18456380 4 85 1.0 0.5 0.8 2.2 105 chr3L 18456275 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456380 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-714 1075 chr3L 18464492 18464505 chr3L 18464578 18464590 5 86 3.5 4.0 3.8 1.0 98 chr3L 18464492 intergenic not near genes chr3L 18464541 intergenic not near genes chr3L 18464590 intergenic not near genes chr3L_5_18460001 chr3L_18460001 RAL-714 1076 chr3L 18485690 18485709 chr3L 18485777 18485796 7 87 3.5 0.5 2.0 2.3 106 chr3L 18485690 3` UTR AstC-R2 - chr3L 18485743 3` UTR AstC-R2 - chr3L 18485796 3` UTR AstC-R2 - chr3L_7_18485001 chr3L_18485001 RAL-714 1077 chr3L 18528625 18528644 chr3L 18537786 18537804 roo 7 9161 3.5 3.0 3.2 1.7 9179 chr3L 18528625 intergenic not near genes chr3L 18533214 intergenic not near genes chr3L 18537804 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-714 1078 chr3L 18585546 18585555 chr3L 18585622 18585631 7 76 3.0 2.0 2.5 2.0 85 chr3L 18585546 intergenic not near genes chr3L 18585588 intergenic not near genes chr3L 18585631 intergenic not near genes chr3L_7_18585001 chr3L_18585001 RAL-714 1079 chr3L 18593956 18593982 chr3L 18595936 18595959 Doc 8 1980 1.5 0.0 0.8 4.4 2003 chr3L 18593956 intergenic term - chr3L 18594958 intergenic not near genes chr3L 18595959 intergenic CR45389 + chr3L_8_18590001 chr3L_18590001 RAL-714 1080 chr3L 18634635 18634658 chr3L 18634719 18634742 7 84 2.0 3.5 2.8 1.8 107 chr3L 18634635 intron MYPT-75D + chr3L 18634688 intron MYPT-75D + chr3L 18634742 intron MYPT-75D + chr3L_7_18630001 chr3L_18630001 RAL-714 1081 chr3L 18649648 18649658 chr3L 18650011 18650021 5 363 0.5 2.0 1.2 2.3 373 chr3L 18649648 intron MYPT-75D + chr3L 18649834 intron MYPT-75D + chr3L 18650021 intron MYPT-75D + chr3L_5_18645001 chr3L_18645001 RAL-714 1082 chr3L 18710768 18710788 chr3L 18718720 18718740 Stalker2 4 7952 3.0 2.0 2.5 1.1 7972 chr3L 18710768 intergenic not near genes chr3L 18714754 intergenic not near genes chr3L 18718740 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-714 1083 chr3L 18721775 18721806 chr3L 18721866 18721896 8 90 1.0 1.5 1.2 3.6 121 chr3L 18721775 intergenic CG12477 - chr3L 18721836 intergenic CG12477 - chr3L 18721896 3` UTR CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-714 1084 chr3L 18772408 18772440 chr3L 18781089 18781120 roo 14 8681 2.0 2.0 2.0 4.7 8712 chr3L 18772408 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_14_18775001 chr3L_18775001 RAL-714 1085 chr3L 18792581 18792604 chr3L 18792662 18792686 5 82 0.5 1.0 0.8 2.8 105 chr3L 18792581 intron ftz-f1 - chr3L 18792634 intron ftz-f1 - chr3L 18792686 intron ftz-f1 - chr3L_5_18790001 chr3L_18790001 RAL-714 1086 chr3L 18843875 18843881 chr3L 18843973 18843979 4 98 2.0 0.5 1.2 1.8 104 chr3L 18843875 intron Indy - chr3L 18843927 intron Indy - chr3L 18843979 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-714 1087 chr3L 18868953 18868980 chr3L 18869055 18869082 5 102 2.5 3.0 2.8 1.3 129 chr3L 18868953 3` UTR Dysb + chr3L 18869018 3` UTR Dysb + chr3L 18869082 3` UTR Dysb + chr3L_5_18865001 chr3L_18865001 RAL-714 1088 chr3L 18888261 18888281 chr3L 18888346 18888365 6 84 2.5 2.0 2.2 1.9 104 chr3L 18888261 intron CG3961 - chr3L 18888313 intron CG3961 - chr3L 18888365 intron CG3961 - chr3L_6_18885001 chr3L_18885001 RAL-714 1089 chr3L 18942855 18942875 chr3L 18942968 18942988 7 111 0.5 0.5 0.5 4.7 133 chr3L 18942855 intron CG32204 - chr3L 18942922 intron CG32204 - chr3L 18942988 intron CG32204 - chr3L_7_18940001 chr3L_18940001 RAL-714 1090 chr3L 19008841 19008871 chr3L 19009176 19009209 jockey 5 334 0.0 2.0 1.0 2.5 368 chr3L 19008841 intron nkd - chr3L 19009025 intron nkd - chr3L 19009209 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-714 1091 chr3L 19029457 19029474 chr3L 19029557 19029576 5 102 2.0 4.5 3.2 1.2 119 chr3L 19029457 intron nkd - chr3L 19029516 intron nkd - chr3L 19029576 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-714 1092 chr3L 19082044 19082071 chr3L 19082138 19082173 9 99 2.5 2.5 2.5 2.6 129 chr3L 19082044 intron Mkp3 - chr3L 19082108 intron Mkp3 - chr3L 19082173 intron Mkp3 - chr3L_9_19080001 chr3L_19080001 RAL-714 1093 chr3L 19115641 19115672 chr3L 19115817 19115844 BS 7 177 5.0 1.5 3.2 1.7 203 chr3L 19115641 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115844 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-714 1094 chr3L 19117042 19117076 chr3L 19124488 19124508 mdg1 8 7444 2.5 1.5 2.0 2.7 7466 chr3L 19117042 intron CG14082 - chr3L 19120775 intron CG14082 - chr3L 19124508 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-714 1095 chr3L 19138556 19138585 chr3L 19138636 19138657 9 78 2.0 1.5 1.8 3.2 101 chr3L 19138556 intron CG14082 - chr3L 19138606 intron CG14082 - chr3L 19138657 intron CG14082 - chr3L_9_19135001 chr3L_19135001 RAL-714 1096 chr3L 19182389 19182411 chr3L 19182470 19182492 8 80 1.0 2.0 1.5 3.2 103 chr3L 19182389 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182492 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-714 1097 chr3L 19208056 19208086 chr3L 19209430 19209456 Doc 10 1374 1.5 0.5 1.0 5.0 1400 chr3L 19208056 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209456 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-714 1098 chr3L 19220637 19220637 chr3L 22908066 22908066 6 3687429 14.0 11.0 12.5 0.4 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-714 1099 chr3L 19244113 19244139 chr3L 19244191 19244217 12 76 3.0 2.5 2.8 3.2 104 chr3L 19244113 intergenic not near genes chr3L 19244165 intergenic not near genes chr3L 19244217 intergenic not near genes chr3L_12_19240001 chr3L_19240001 RAL-714 1100 chr3L 19377799 19377826 chr3L 19378483 19378512 10 686 0.0 2.5 1.2 4.5 713 chr3L 19377799 intron CG32206 - chr3L 19378156 intron CG32206 - chr3L 19378512 intron CG32206 - chr3L_10_19375001 chr3L_19375001 RAL-714 1101 chr3L 19404975 19405009 chr3L 19405052 19405066 8 74 4.0 1.0 2.5 2.3 91 chr3L 19404975 intron CG32206 - chr3L 19405020 intron CG32206 - chr3L 19405066 intron CG32206 - chr3L_8_19405001 chr3L_19405001 RAL-714 1102 chr3L 19426746 19426782 chr3L 19426824 19426860 9 78 4.0 4.0 4.0 1.8 114 chr3L 19426746 intergenic not near genes chr3L 19426803 intergenic not near genes chr3L 19426860 intergenic not near genes chr3L_9_19425001 chr3L_19425001 RAL-714 1103 chr3L 19695437 19695458 chr3L 19695516 19695537 5 79 1.5 4.5 3.0 1.2 100 chr3L 19695437 intergenic verm - chr3L 19695487 intergenic verm - chr3L 19695537 intergenic verm - chr3L_5_19695001 chr3L_19695001 RAL-714 1104 chr3L 19848509 19848531 chr3L 19857698 19857720 roo 4 9190 3.5 3.5 3.5 0.9 9211 chr3L 19848509 intron Papss + chr3L 19853114 intron Papss + chr3L 19857720 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-714 1105 chr3L 19981205 19981228 chr3L 19981285 19981308 4 80 1.5 2.0 1.8 1.4 103 chr3L 19981205 intergenic CG17732 + chr3L 19981256 intergenic CG17732 + chr3L 19981308 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-714 1106 chr3L 20113661 20113685 chr3L 20122918 20122941 roo 5 9257 2.0 3.5 2.8 1.3 9280 chr3L 20113661 intergenic not near genes chr3L 20118301 intergenic not near genes chr3L 20122941 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-714 1107 chr3L 20143095 20143112 chr3L 20143175 20143192 6 80 2.0 4.0 3.0 1.5 97 chr3L 20143095 intergenic not near genes chr3L 20143144 intergenic not near genes chr3L 20143192 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-714 1108 chr3L 20148287 20148311 chr3L 20148374 20148401 5 85 5.0 3.0 4.0 1.0 114 chr3L 20148287 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148401 intergenic not near genes chr3L_5_20145001 chr3L_20145001 RAL-714 1109 chr3L 20156168 20156192 chr3L 20156290 20156313 9 121 2.5 3.5 3.0 2.2 145 chr3L 20156168 intron CG42674 - chr3L 20156240 intron CG42674 - chr3L 20156313 intron CG42674 - chr3L_9_20155001 chr3L_20155001 RAL-714 1110 chr3L 20257334 20257360 chr3L 20258454 20258480 pogo 7 1120 1.5 4.0 2.8 1.8 1146 chr3L 20257334 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258480 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-714 1111 chr3L 20262798 20262823 chr3L 20262910 20262933 14 110 4.5 3.0 3.8 2.9 135 chr3L 20262798 exon rdgC + chr3L 20262866 intron rdgC + chr3L 20262933 intron rdgC + chr3L_14_20260001 chr3L_20260001 RAL-714 1112 chr3L 20386937 20386969 chr3L 20387039 20387071 7 102 3.5 1.0 2.2 2.2 134 chr3L 20386937 intron fbl + chr3L 20387004 intron fbl + chr3L 20387071 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-714 1113 chr3L 20451272 20451306 chr3L 20451513 20451547 8 241 1.0 3.5 2.2 2.5 275 chr3L 20451272 intron CG5199 - chr3L 20451410 intron CG5199 - chr3L 20451547 intron CG5199 - chr3L_8_20450001 chr3L_20450001 RAL-714 1114 chr3L 20476752 20476782 chr3L 20484351 20484381 springer 5 7599 2.5 2.5 2.5 1.4 7629 chr3L 20476752 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484381 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-714 1115 chr3L 20548370 20548385 chr3L 20548459 20548468 4 87 3.0 3.5 3.2 1.0 98 chr3L 20548370 intergenic not near genes chr3L 20548419 intergenic not near genes chr3L 20548468 intergenic not near genes chr3L_4_20545001 chr3L_20545001 RAL-714 1116 chr3L 20826364 20826384 chr3L 20826553 20826573 6 190 2.0 4.0 3.0 1.5 209 chr3L 20826364 intron Pka-R1 + chr3L 20826468 intron Pka-R1 + chr3L 20826573 intron Pka-R1 + chr3L_6_20825001 chr3L_20825001 RAL-714 1117 chr3L 20849274 20849302 chr3L 20849353 20849381 5 79 3.0 2.5 2.8 1.3 107 chr3L 20849274 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-714 1118 chr3L 21014915 21014948 chr3L 21023396 21023427 Tirant 6 8472 4.5 4.5 4.5 1.1 8512 chr3L 21014915 intron skd - chr3L 21019171 intron skd - chr3L 21023427 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-714 1119 chr3L 21071313 21071345 chr3L 21071476 21071508 7 163 2.5 2.0 2.2 2.2 195 chr3L 21071313 intron siz + chr3L 21071410 intron siz + chr3L 21071508 intron siz + chr3L_7_21070001 chr3L_21070001 RAL-714 1120 chr3L 21151864 21151891 chr3L 21156948 21156975 flea 9 5084 5.0 3.0 4.0 1.8 5111 chr3L 21151864 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156975 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-714 1121 chr3L 21160963 21160992 chr3L 21161059 21161086 7 95 5.5 3.0 4.2 1.3 123 chr3L 21160963 5` UTR Ac78C - chr3L 21161024 intron Ac78C - chr3L 21161086 intron Ac78C - chr3L_7_21160001 chr3L_21160001 RAL-714 1122 chr3L 21161435 21161458 chr3L 21161513 21161537 5 79 1.0 1.5 1.2 2.3 102 chr3L 21161435 intron Ac78C - chr3L 21161486 intron Ac78C - chr3L 21161537 intron Ac78C - chr3L_5_21160001 chr3L_21160001 RAL-714 1123 chr3L 21274204 21274236 chr3L 21274374 21274407 7 169 1.0 4.0 2.5 2.0 203 chr3L 21274204 intron AcCoAS - chr3L 21274306 intron AcCoAS - chr3L 21274407 intron AcCoAS - chr3L_7_21270001 chr3L_21270001 RAL-714 1124 chr3L 21306145 21306180 chr3L 21315304 21315339 roo 4 9159 1.5 2.0 1.8 1.4 9194 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-714 1125 chr3L 21319538 21319546 chr3L 21319626 21319636 7 89 3.0 5.5 4.2 1.3 98 chr3L 21319538 5` UTR Rab26 + chr3L 21319587 5` UTR Rab26 + chr3L 21319636 5` UTR Rab26 + chr3L_7_21315001 chr3L_21315001 RAL-714 1126 chr3L 21361734 21361753 chr3L 21362688 21362707 G2 6 954 2.0 3.0 2.5 1.7 973 chr3L 21361734 intergenic not near genes chr3L 21362220 intergenic not near genes chr3L 21362707 intergenic not near genes chr3L_6_21360001 chr3L_21360001 RAL-714 1127 chr3L 21362851 21362884 chr3L 21362935 21362968 7 84 0.5 2.0 1.2 3.2 117 chr3L 21362851 intergenic not near genes chr3L 21362910 intergenic not near genes chr3L 21362968 intergenic not near genes chr3L_7_21360001 chr3L_21360001 RAL-714 1128 chr3L 21406993 21407020 chr3L 21407072 21407099 6 78 5.0 0.5 2.8 1.6 106 chr3L 21406993 intron rgn + chr3L 21407046 intron rgn + chr3L 21407099 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-714 1129 chr3L 21415139 21415163 chr3L 21415222 21415246 4 82 3.0 3.0 3.0 1.0 107 chr3L 21415139 intron rgn + chr3L 21415192 intron rgn + chr3L 21415246 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-714 1130 chr3L 4341332 4341337 chr3L 21448027 21448027 4 17106694 12.5 7.5 10.0 0.4 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-714 1131 chr3L 21498832 21498865 chr3L 21500468 21500500 1360 15 1636 4.0 4.5 4.2 2.9 1668 chr3L 21498832 intron Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500500 intron Glg1 - chr3L_15_21495001 chr3L_21495001 RAL-714 1132 chr3L 21639201 21639218 chr3L 21639279 21639297 6 79 3.5 1.5 2.5 1.7 96 chr3L 21639201 intergenic CG32444 +,CG32445 + chr3L 21639249 intergenic CG32445 +,CG32444 + chr3L 21639297 intergenic CG32445 +,CG32444 + chr3L_6_21635001 chr3L_21635001 RAL-714 1133 chr3L 21656998 21657029 chr3L 21657091 21657122 7 93 1.0 0.5 0.8 3.9 124 chr3L 21656998 intron CG43980 + chr3L 21657060 intron CG43980 + chr3L 21657122 intron CG43980 + chr3L_7_21655001 chr3L_21655001 RAL-714 1134 chr3L 21749320 21749348 chr3L 21754480 21754508 Doc 11 5160 1.5 3.5 2.5 3.1 5188 chr3L 21749320 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754508 intron Syn1 - chr3L_11_21750001 chr3L_21750001 RAL-714 1135 chr3L 21769601 21769636 chr3L 21769679 21769713 12 77 3.5 2.5 3.0 3.0 112 chr3L 21769601 intron,intron Syn1 -,CG42689 + chr3L 21769657 intron,intron Syn1 -,CG42689 + chr3L 21769713 intron,intron Syn1 -,CG42689 + chr3L_12_21765001 chr3L_21765001 RAL-714 1136 chr3L 21771899 21771922 chr3L 21772010 21772033 8 110 4.5 2.5 3.5 1.8 134 chr3L 21771899 intron CG42689 + chr3L 21771966 intron CG42689 + chr3L 21772033 intron CG42689 + chr3L_8_21770001 chr3L_21770001 RAL-714 1137 chr3L 21836725 21836761 chr3L 21836810 21836847 5 85 1.0 1.5 1.2 2.3 122 chr3L 21836725 3` UTR P5CDh1 - chr3L 21836786 3` UTR P5CDh1 - chr3L 21836847 3` UTR P5CDh1 - chr3L_5_21835001 chr3L_21835001 RAL-714 1138 chr3L 21849501 21849532 chr3L 21849583 21849593 10 80 1.0 1.5 1.2 4.5 92 chr3L 21849501 intron mub + chr3L 21849547 intron mub + chr3L 21849593 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-714 1139 chr3L 21905487 21905498 chr3L 21905588 21905600 6 102 5.0 1.5 3.2 1.4 113 chr3L 21905487 intron mub + chr3L 21905544 intron mub + chr3L 21905600 intron mub + chr3L_6_21905001 chr3L_21905001 RAL-714 1140 chr3L 21972567 21972588 chr3L 21972725 21972742 10 157 4.0 2.5 3.2 2.4 175 chr3L 21972567 intron CG7470 + chr3L 21972654 intron CG7470 + chr3L 21972742 intron CG7470 + chr3L_10_21970001 chr3L_21970001 RAL-714 1141 chr3L 22023217 22023249 chr3L 22023309 22023341 9 90 1.0 0.5 0.8 5.0 124 chr3L 22023217 intergenic not near genes chr3L 22023279 intergenic not near genes chr3L 22023341 intergenic not near genes chr3L_9_22020001 chr3L_22020001 RAL-714 1142 chr3L 22099676 22099707 chr3L 22105862 22105893 3S18 7 6185 3.0 1.5 2.2 2.2 6217 chr3L 22099676 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105893 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-714 1143 chr3L 22134268 22134292 chr3L 22134365 22134389 4 96 2.5 1.0 1.8 1.4 121 chr3L 22134268 intergenic not near genes chr3L 22134328 intergenic not near genes chr3L 22134389 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-714 1144 chr3L 22435581 22435612 chr3L 22435656 22435671 6 73 3.0 3.0 3.0 1.5 90 chr3L 22435581 intergenic not near genes chr3L 22435626 intergenic not near genes chr3L 22435671 intergenic not near genes chr3L_6_22435001 chr3L_22435001 RAL-714 1145 chr3L 22443894 22443917 chr3L 22444307 22444334 4 416 3.5 2.0 2.8 1.1 440 chr3L 22443894 intergenic not near genes chr3L 22444114 intergenic not near genes chr3L 22444334 intergenic not near genes chr3L_4_22440001 chr3L_22440001 RAL-714 1146 chr3L 22522701 22522728 chr3L 22522775 22522805 12 77 2.5 5.5 4.0 2.4 104 chr3L 22522701 intergenic not near genes chr3L 22522753 intergenic not near genes chr3L 22522805 intergenic not near genes chr3L_12_22520001 chr3L_22520001 RAL-714 1147 chr3L 22555770 22555785 chr3L 22563239 22563255 blood 5 7467 3.5 0.5 2.0 1.7 7485 chr3L 22555770 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563255 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-714 1148 chr3L 22577622 22577652 chr3L 22582405 22582439 Doc 12 4787 3.0 3.0 3.0 3.0 4817 chr3L 22577622 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582439 3` UTR CG14459 - chr3L_12_22580001 chr3L_22580001 RAL-714 1149 chr3L 22617188 22617221 chr3L 22624640 22624672 blood 12 7452 1.5 1.5 1.5 4.8 7484 chr3L 22617188 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_12_22620001 chr3L_22620001 RAL-714 1150 chr3L 22761388 22761423 chr3L 22766819 22766857 Ivk 11 5433 3.0 3.0 3.0 2.8 5469 chr3L 22761388 intron SPoCk + chr3L 22764122 intron SPoCk + chr3L 22766857 intron SPoCk + chr3L_11_22760001 chr3L_22760001 RAL-714 1151 chr3L 22865983 22866008 chr3L 22867116 22867141 Doc 5 1133 3.5 1.0 2.2 1.6 1158 chr3L 22865983 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867141 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-714 1152 chr3L 19220632 19220637 chr3L 22908066 22908066 20 3687431 14.0 11.0 12.5 1.5 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_20_21060001 chr3L_21060001 RAL-714 1153 chr3L 19220633 19220637 chr3L 22908067 22908067 9 3687432 14.0 11.0 12.5 0.7 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-714 1154 chr3L 22921374 22921403 chr3L 22921450 22921479 9 75 3.0 3.5 3.2 2.1 105 chr3L 22921374 intron CG12768 + chr3L 22921426 intron CG12768 + chr3L 22921479 intron CG12768 + chr3L_9_22920001 chr3L_22920001 RAL-714 1155 chr3L 22924947 22924972 chr3L 22925023 22925050 5 76 1.0 1.0 1.0 2.5 103 chr3L 22924947 intergenic not near genes chr3L 22924998 intergenic not near genes chr3L 22925050 intergenic not near genes chr3L_5_22920001 chr3L_22920001 RAL-714 1156 chr3L 22989878 22989888 chr3L 22996851 22996862 297 7 6974 1.0 4.0 2.5 2.0 6984 chr3L 22989878 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996862 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-714 1157 chr3L 23042225 23042256 chr3L 23048977 23049007 gypsy6 8 6752 4.5 1.5 3.0 2.0 6782 chr3L 23042225 intergenic not near genes chr3L 23045616 intergenic not near genes chr3L 23049007 intergenic not near genes chr3L_8_23045001 chr3L_23045001 RAL-714 1158 chr3L 23450284 23450313 chr3L 23455800 23455829 4 5516 22.5 12.5 17.5 0.2 5545 chr3L 23450284 intergenic not near genes chr3L 23453056 intergenic not near genes chr3L 23455829 intergenic not near genes chr3L_4_23450001 chr3L_23450001 RAL-714 1159 chr3L 23875527 23875558 chr3L 23875607 23875638 10 80 2.5 3.0 2.8 2.6 111 chr3L 23875527 intron CG40470 - chr3L 23875582 intron CG40470 - chr3L 23875638 intron CG40470 - chr3L_10_23875001 chr3L_23875001 RAL-714 1160 chr3L 24012412 24012432 chr3L 24020752 24020771 roo 4 8340 1.0 0.5 0.8 2.2 8359 chr3L 24012412 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020771 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-714 1161 chr3L 24168790 24168815 chr3L 24176117 24176142 ZAM 10 7325 3.0 3.0 3.0 2.5 7352 chr3L 24168790 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176142 intron Snap25 + chr3L_10_24170001 chr3L_24170001 RAL-714 1162 chr3L 24282162 24282179 chr3L 24282246 24282263 4 84 1.0 1.0 1.0 2.0 101 chr3L 24282162 intron Snap25 + chr3L 24282212 intron Snap25 + chr3L 24282263 intron Snap25 + chr3L_4_24280001 chr3L_24280001 RAL-714 1163 chr3L 24324295 24324321 chr3L 24324390 24324416 5 95 0.5 2.0 1.2 2.3 121 chr3L 24324295 intergenic not near genes chr3L 24324356 intergenic not near genes chr3L 24324416 intergenic nvd + chr3L_5_24320001 chr3L_24320001 RAL-714 1164 chr3L 24363251 24363271 chr3L 24363329 24363349 6 76 2.0 6.0 4.0 1.2 98 chr3L 24363251 intron nvd + chr3L 24363300 intron nvd + chr3L 24363349 intron nvd + chr3L_6_24360001 chr3L_24360001 RAL-714 1165 chr3L 25106583 25106608 chr3L 25106670 25106695 9 86 1.0 2.0 1.5 3.6 112 chr3L 25106583 intergenic not near genes chr3L 25106639 intergenic not near genes chr3L 25106695 intergenic not near genes chr3L_9_25105001 chr3L_25105001 RAL-714 1166 chr3L 25268564 25268591 chr3L 25268645 25268672 4 80 0.5 1.0 0.8 2.2 108 chr3L 25268564 intron CG40467 - chr3L 25268618 intron CG40467 - chr3L 25268672 intron CG40467 - chr3L_4_25265001 chr3L_25265001 RAL-714 1167 chr3L 25513585 25513610 chr3L 25513664 25513689 7 79 1.5 1.0 1.2 3.2 104 chr3L 25513585 intron CG41343 - chr3L 25513637 intron CG41343 - chr3L 25513689 intron CG41343 - chr3L_7_25510001 chr3L_25510001 RAL-714 1168 chr3L 25514880 25514901 chr3L 25514972 25514993 6 92 2.5 2.5 2.5 1.7 113 chr3L 25514880 intron CG41343 - chr3L 25514936 intron CG41343 - chr3L 25514993 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-714 1169 chr3L 25628501 25628523 chr3L 25633272 25633294 F-element 7 4771 3.0 2.5 2.8 1.8 4793 chr3L 25628501 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633294 intron CG41343 - chr3L_7_25630001 chr3L_25630001 RAL-714 1170 chr3L 25886867 25886892 chr3L 25887269 25887295 6 403 2.0 1.5 1.8 2.1 428 chr3L 25886867 intron CG40178 - chr3L 25887081 intron CG40178 - chr3L 25887295 intron CG40178 - chr3L_6_25885001 chr3L_25885001 RAL-714 1171 chr3L 27167950 27167980 chr3L 27168070 27168100 10 118 0.5 4.0 2.2 3.1 150 chr3L 27167950 intergenic not near genes chr3L 27168025 intergenic not near genes chr3L 27168100 intergenic not near genes chr3L_10_27165001 chr3L_27165001 RAL-714 1172 chr3L 27390703 27390710 chr3L 27390782 27390789 5 79 36.5 34.0 35.2 0.1 86 chr3L 27390703 intron Dbp80 + chr3L 27390746 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-714 1173 chr3L 27727637 27727652 chr3L 27728744 27728759 G-element 4 1107 2.5 1.5 2.0 1.3 1122 chr3L 27727637 intergenic not near genes chr3L 27728198 intergenic not near genes chr3L 27728759 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-714 1174 chr3R 1021763 1021796 chr3R 1022017 1022050 9 255 22.5 19.0 20.8 0.4 287 chr3R 1021763 intergenic not near genes chr3R 1021906 intergenic not near genes chr3R 1022050 intergenic not near genes chr3R_9_1020001 chr3R_1020001 RAL-714 1175 chr3R 1521177 1521184 chr3R 1521251 1521272 4 84 10.0 9.0 9.5 0.4 95 chr3R 1521177 intergenic not near genes chr3R 1521224 intergenic not near genes chr3R 1521272 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-714 1176 chr3R 1866442 1866444 chr3R 1866799 1866804 4 359 14.0 11.0 12.5 0.3 362 chr3R 1866442 intron CG42623 + chr3R 1866623 intron CG42623 + chr3R 1866804 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-714 1177 chr3R 1939050 1939074 chr3R 1939144 1939167 5 93 2.0 1.5 1.8 1.8 117 chr3R 1939050 intergenic not near genes chr3R 1939108 intergenic not near genes chr3R 1939167 intergenic not near genes chr3R_5_1935001 chr3R_1935001 RAL-714 1178 chr3R 1953153 1953170 chr3R 1958538 1958555 Cr1a 5 5385 26.0 12.0 19.0 0.2 5402 chr3R 1953153 intergenic not near genes chr3R 1955854 intergenic not near genes chr3R 1958555 intergenic not near genes chr3R_5_1955001 chr3R_1955001 RAL-714 1179 chr3R 2534106 2534136 chr3R 2541713 2541743 9 7607 12.5 14.0 13.2 0.6 7637 chr3R 2534106 intergenic not near genes chr3R 2537924 intergenic not near genes chr3R 2541743 intergenic not near genes chr3R_9_2535001 chr3R_2535001 RAL-714 1180 chr3R 4063812 4063829 chr3R 4069092 4069109 4 5280 2.0 4.5 3.2 1.0 5297 chr3R 4063812 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-714 1181 chr3R 4195479 4195506 chr3R 4195787 4195814 8 308 2.5 3.0 2.8 2.1 335 chr3R 4195479 intergenic not near genes chr3R 4195646 intergenic not near genes chr3R 4195814 intergenic not near genes chr3R_8_4195001 chr3R_4195001 RAL-714 1182 chr3R 4206072 4206100 chr3R 4211647 4211675 mdg3 8 5573 3.5 0.5 2.0 2.7 5603 chr3R 4206072 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211675 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-714 1183 chr3R 4366760 4366781 chr3R 4375138 4375164 roo 6 8382 2.0 1.5 1.8 2.1 8404 chr3R 4366760 3` UTR CG1090 + chr3R 4370962 intergenic not near genes chr3R 4375164 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-714 1184 chr3R 4408411 4408439 chr3R 4412712 4412743 Juan 6 4303 4.5 1.5 3.0 1.5 4332 chr3R 4408411 intron CG32944 - chr3R 4410577 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-714 1185 chr3R 4531316 4531332 chr3R 4531396 4531412 9 80 2.0 2.0 2.0 3.0 96 chr3R 4531316 intron CG34357 - chr3R 4531364 intron CG34357 - chr3R 4531412 intron CG34357 - chr3R_9_4530001 chr3R_4530001 RAL-714 1186 chr3R 4609554 4609566 chr3R 4610718 4610730 1360 6 1164 5.0 3.0 4.0 1.2 1176 chr3R 4609554 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610730 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-714 1187 chr3R 4680711 4680740 chr3R 4680790 4680819 7 79 1.5 1.0 1.2 3.2 108 chr3R 4680711 intron CG43427 + chr3R 4680765 intron CG43427 + chr3R 4680819 5` UTR CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-714 1188 chr3R 4753239 4753265 chr3R 4757542 4757568 F-element 9 4301 7.5 8.0 7.8 1.0 4329 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757568 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-714 1189 chr3R 4769166 4769186 chr3R 4769241 4769264 5 77 1.5 1.5 1.5 2.0 98 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769264 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-714 1190 chr3R 4796112 4796149 chr3R 4796235 4796268 11 121 2.0 3.0 2.5 3.1 156 chr3R 4796112 intron ctrip - chr3R 4796190 intron ctrip - chr3R 4796268 intron ctrip - chr3R_11_4795001 chr3R_4795001 RAL-714 1191 chr3R 4861566 4861597 chr3R 4861647 4861678 11 81 3.5 4.0 3.8 2.3 112 chr3R 4861566 intron opa + chr3R 4861622 intron opa + chr3R 4861678 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-714 1192 chr3R 4979992 4980016 chr3R 4980072 4980099 6 82 0.0 2.0 1.0 3.0 107 chr3R 4979992 intergenic not near genes chr3R 4980046 intergenic not near genes chr3R 4980099 intergenic not near genes chr3R_6_4980001 chr3R_4980001 RAL-714 1193 chr3R 5029587 5029602 chr3R 5029978 5029993 8 390 2.5 2.0 2.2 2.5 406 chr3R 5029587 intergenic not near genes chr3R 5029790 intergenic not near genes chr3R 5029993 intergenic not near genes chr3R_8_5025001 chr3R_5025001 RAL-714 1194 chr3R 5067990 5068014 chr3R 5073507 5073529 mdg3 10 5516 1.5 0.5 1.0 5.0 5539 chr3R 5067990 intergenic not near genes chr3R 5070760 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-714 1195 chr3R 5162935 5162963 chr3R 5163087 5163115 4 152 1.0 0.5 0.8 2.2 180 chr3R 5162935 intron dpr16 + chr3R 5163025 intron dpr16 + chr3R 5163115 intron dpr16 + chr3R_4_5160001 chr3R_5160001 RAL-714 1196 chr3R 5271156 5271183 chr3R 5271235 5271261 11 79 5.5 3.0 4.2 2.1 105 chr3R 5271156 intergenic not near genes chr3R 5271208 intergenic not near genes chr3R 5271261 intergenic not near genes chr3R_11_5270001 chr3R_5270001 RAL-714 1197 chr3R 5276249 5276268 chr3R 5276350 5276369 7 101 4.5 1.0 2.8 1.8 120 chr3R 5276249 intron,exon mtd -,CG31538 - chr3R 5276309 intron,exon mtd -,CG31538 - chr3R 5276369 intron,exon mtd -,CG31538 - chr3R_7_5275001 chr3R_5275001 RAL-714 1198 chr3R 5278087 5278112 chr3R 5278168 5278193 5 81 3.0 2.0 2.5 1.4 106 chr3R 5278087 intron mtd - chr3R 5278140 intron mtd - chr3R 5278193 intron mtd - chr3R_5_5275001 chr3R_5275001 RAL-714 1199 chr3R 5287453 5287466 chr3R 5287532 5287553 4 85 4.0 3.5 3.8 0.8 100 chr3R 5287453 intron mtd - chr3R 5287503 intron mtd - chr3R 5287553 intron mtd - chr3R_4_5285001 chr3R_5285001 RAL-714 1200 chr3R 5338398 5338425 chr3R 5343575 5343602 Rt1c 10 5177 6.0 8.0 7.0 1.2 5204 chr3R 5338398 intron mtd - chr3R 5341000 intron mtd - chr3R 5343602 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-714 1201 chr3R 5445959 5445985 chr3R 5452419 5452445 Burdock 7 6460 2.5 2.0 2.2 2.2 6486 chr3R 5445959 intron CG14669 + chr3R 5449202 intron CG14669 + chr3R 5452445 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-714 1202 chr3R 5680788 5680809 chr3R 5680872 5680893 5 82 1.5 5.0 3.2 1.2 105 chr3R 5680788 3` UTR Rab23 - chr3R 5680840 3` UTR Rab23 - chr3R 5680893 3` UTR Rab23 - chr3R_5_5680001 chr3R_5680001 RAL-714 1203 chr3R 5688781 5688811 chr3R 5688902 5688932 5 121 4.0 4.0 4.0 1.0 151 chr3R 5688781 intron plx + chr3R 5688856 intron plx + chr3R 5688932 intron plx + chr3R_5_5685001 chr3R_5685001 RAL-714 1204 chr3R 5726093 5726126 chr3R 5726254 5726287 4 162 2.0 0.5 1.2 1.8 194 chr3R 5726093 intergenic not near genes chr3R 5726190 intergenic not near genes chr3R 5726287 intergenic not near genes chr3R_4_5725001 chr3R_5725001 RAL-714 1205 chr3R 5765628 5765660 chr3R 5765712 5765720 12 81 3.5 4.0 3.8 2.5 92 chr3R 5765628 intron CG2082 - chr3R 5765674 intron CG2082 - chr3R 5765720 intron CG2082 - chr3R_12_5765001 chr3R_5765001 RAL-714 1206 chr3R 5769237 5769264 chr3R 5769335 5769361 7 98 1.5 5.5 3.5 1.6 124 chr3R 5769237 intron CG2082 - chr3R 5769299 intron CG2082 - chr3R 5769361 intron CG2082 - chr3R_7_5765001 chr3R_5765001 RAL-714 1207 chr3R 5809127 5809142 chr3R 5809368 5809383 pogo 6 241 1.0 2.5 1.8 2.1 256 chr3R 5809127 3` UTR CG11000 + chr3R 5809255 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-714 1208 chr3R 5822387 5822411 chr3R 5823554 5823578 1360 10 1166 3.5 5.0 4.2 1.9 1191 chr3R 5822387 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823578 3` UTR CG2023 - chr3R_10_5820001 chr3R_5820001 RAL-714 1209 chr3R 5927570 5927584 chr3R 5927800 5927820 pogo 7 234 4.5 3.0 3.8 1.5 250 chr3R 5927570 intron CG34113 - chr3R 5927695 intron CG34113 - chr3R 5927820 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-714 1210 chr3R 5942477 5942498 chr3R 5942575 5942595 8 97 2.0 3.0 2.5 2.3 118 chr3R 5942477 intron CG34113 - chr3R 5942536 intron CG34113 - chr3R 5942595 intron CG34113 - chr3R_8_5940001 chr3R_5940001 RAL-714 1211 chr3R 6015964 6015992 chr3R 6024441 6024473 Tirant 6 8479 3.5 4.5 4.0 1.2 8509 chr3R 6015964 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-714 1212 chr3R 6042577 6042604 chr3R 6042674 6042701 4 97 2.5 1.0 1.8 1.4 124 chr3R 6042577 intergenic not near genes chr3R 6042639 intergenic not near genes chr3R 6042701 intergenic not near genes chr3R_4_6040001 chr3R_6040001 RAL-714 1213 chr3R 6141917 6141938 chr3R 6141994 6142013 8 76 8.5 6.0 7.2 1.0 96 chr3R 6141917 intergenic not near genes chr3R 6141965 intergenic not near genes chr3R 6142013 intergenic not near genes chr3R_8_6140001 chr3R_6140001 RAL-714 1214 chr3R 6141940 6141953 chr3R 6141991 6142030 11 73 6.0 5.0 5.5 1.7 90 chr3R 6141940 intergenic not near genes chr3R 6141985 intergenic not near genes chr3R 6142030 intergenic not near genes chr3R_11_6140001 chr3R_6140001 RAL-714 1215 chr3R 6206286 6206320 chr3R 6206502 6206537 BS 11 215 6.0 3.0 4.5 2.0 251 chr3R 6206286 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206537 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-714 1216 chr3R 6461576 6461612 chr3R 6461657 6461692 4 80 1.0 2.5 1.8 1.4 116 chr3R 6461576 intergenic not near genes chr3R 6461634 intergenic not near genes chr3R 6461692 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-714 1217 chr3R 6510031 6510051 chr3R 6515112 6515132 jockey 4 5081 2.0 3.0 2.5 1.1 5101 chr3R 6510031 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515132 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-714 1218 chr3R 6519113 6519135 chr3R 6519221 6519243 7 108 5.0 0.0 2.5 2.0 130 chr3R 6519113 intergenic not near genes chr3R 6519178 intergenic not near genes chr3R 6519243 intergenic not near genes chr3R_7_6515001 chr3R_6515001 RAL-714 1219 chr3R 6538203 6538233 chr3R 6538301 6538329 8 96 3.5 2.5 3.0 2.0 126 chr3R 6538203 intron dpr11 - chr3R 6538266 intron dpr11 - chr3R 6538329 exon dpr11 - chr3R_8_6535001 chr3R_6535001 RAL-714 1220 chr3R 6550324 6550353 chr3R 6550405 6550434 9 81 1.0 1.5 1.2 4.1 110 chr3R 6550324 intron dpr11 - chr3R 6550379 intron dpr11 - chr3R 6550434 intron dpr11 - chr3R_9_6550001 chr3R_6550001 RAL-714 1221 chr3R 6551109 6551144 chr3R 6551202 6551237 12 94 3.0 2.5 2.8 3.2 128 chr3R 6551109 intron dpr11 - chr3R 6551173 intron dpr11 - chr3R 6551237 intron dpr11 - chr3R_12_6550001 chr3R_6550001 RAL-714 1222 chr3R 6561957 6561979 chr3R 6562041 6562063 8 84 1.0 1.0 1.0 4.0 106 chr3R 6561957 intron dpr11 - chr3R 6562010 intron dpr11 - chr3R 6562063 intron dpr11 - chr3R_8_6560001 chr3R_6560001 RAL-714 1223 chr3R 6639913 6639927 chr3R 6639991 6640004 6 78 4.0 0.0 2.0 2.0 91 chr3R 6639913 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640004 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-714 1224 chr3R 6698002 6698038 chr3R 6698081 6698116 6 79 2.0 1.0 1.5 2.4 114 chr3R 6698002 intergenic not near genes chr3R 6698059 intergenic not near genes chr3R 6698116 intergenic not near genes chr3R_6_6695001 chr3R_6695001 RAL-714 1225 chr3R 6737501 6737530 chr3R 6739288 6739317 Doc 6 1784 2.0 3.5 2.8 1.6 1816 chr3R 6737501 intron pb - chr3R 6738409 intron pb - chr3R 6739317 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-714 1226 chr3R 6770091 6770106 chr3R 6770351 6770366 7 260 6.5 1.5 4.0 1.4 275 chr3R 6770091 intron CR42721 + chr3R 6770228 intron CR42721 + chr3R 6770366 intron CR42721 + chr3R_7_6770001 chr3R_6770001 RAL-714 1227 chr3R 6782440 6782464 chr3R 6782519 6782543 7 79 2.0 5.5 3.8 1.5 103 chr3R 6782440 intergenic not near genes chr3R 6782492 intergenic not near genes chr3R 6782543 intergenic not near genes chr3R_7_6780001 chr3R_6780001 RAL-714 1228 chr3R 6807267 6807295 chr3R 6807349 6807374 7 82 1.5 2.0 1.8 2.5 107 chr3R 6807267 intergenic not near genes chr3R 6807320 intergenic not near genes chr3R 6807374 intergenic not near genes chr3R_7_6805001 chr3R_6805001 RAL-714 1229 chr3R 6862221 6862252 chr3R 6862308 6862339 7 87 1.0 1.0 1.0 3.5 118 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-714 1230 chr3R 6978881 6978914 chr3R 6978966 6978999 4 84 2.0 1.0 1.5 1.6 118 chr3R 6978881 intron Antp - chr3R 6978940 intron Antp - chr3R 6978999 intron Antp - chr3R_4_6975001 chr3R_6975001 RAL-714 1231 chr3R 7092781 7092812 chr3R 7093345 7093376 12 564 3.5 4.0 3.8 2.5 595 chr3R 7092781 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093376 3` UTR CR43685 - chr3R_12_7090001 chr3R_7090001 RAL-714 1232 chr3R 7103284 7103311 chr3R 7103359 7103386 5 74 3.0 2.5 2.8 1.3 102 chr3R 7103284 intron Alh - chr3R 7103335 intron Alh - chr3R 7103386 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-714 1233 chr3R 7126504 7126528 chr3R 7126599 7126623 5 95 2.0 2.5 2.2 1.6 119 chr3R 7126504 3` UTR CG10068 - chr3R 7126564 3` UTR CG10068 - chr3R 7126623 3` UTR CG10068 - chr3R_5_7125001 chr3R_7125001 RAL-714 1234 chr3R 7270945 7270961 chr3R 7271028 7271045 6 83 1.5 4.0 2.8 1.6 100 chr3R 7270945 intergenic Syt4 + chr3R 7270995 intergenic Syt4 + chr3R 7271045 intergenic Syt4 + chr3R_6_7270001 chr3R_7270001 RAL-714 1235 chr3R 7418064 7418081 chr3R 7418380 7418398 7 317 2.5 1.5 2.0 2.3 334 chr3R 7418064 intergenic not near genes chr3R 7418231 intergenic not near genes chr3R 7418398 intergenic not near genes chr3R_7_7415001 chr3R_7415001 RAL-714 1236 chr3R 7438913 7438944 chr3R 7438991 7439022 13 76 2.5 2.0 2.2 4.1 109 chr3R 7438913 intergenic not near genes chr3R 7438968 intergenic not near genes chr3R 7439022 intergenic not near genes chr3R_13_7435001 chr3R_7435001 RAL-714 1237 chr3R 7447990 7448009 chr3R 7448068 7448087 6 78 3.5 0.5 2.0 2.0 97 chr3R 7447990 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448087 intergenic not near genes chr3R_6_7445001 chr3R_7445001 RAL-714 1238 chr3R 7503767 7503797 chr3R 7503882 7503912 4 115 4.5 2.5 3.5 0.9 145 chr3R 7503767 intron alpha-Est9 - chr3R 7503840 intron alpha-Est9 - chr3R 7503912 intron alpha-Est9 - chr3R_4_7500001 chr3R_7500001 RAL-714 1239 chr3R 7526298 7526324 chr3R 7526380 7526406 5 82 3.0 5.0 4.0 1.0 108 chr3R 7526298 intron alpha-Est6 - chr3R 7526352 intron alpha-Est6 - chr3R 7526406 intron alpha-Est6 - chr3R_5_7525001 chr3R_7525001 RAL-714 1240 chr3R 7533525 7533558 chr3R 7533666 7533696 10 138 3.5 1.5 2.5 2.9 171 chr3R 7533525 3` UTR alpha-Est5 - chr3R 7533610 3` UTR alpha-Est5 - chr3R 7533696 3` UTR alpha-Est5 - chr3R_10_7530001 chr3R_7530001 RAL-714 1241 chr3R 7548605 7548633 chr3R 7548684 7548689 6 75 2.5 1.5 2.0 2.0 84 chr3R 7548605 intron alpha-Est1 - chr3R 7548647 intron alpha-Est1 - chr3R 7548689 intron alpha-Est1 - chr3R_6_7545001 chr3R_7545001 RAL-714 1242 chr3R 7621555 7621562 chr3R 7621645 7621652 4 90 0.5 3.0 1.8 1.4 97 chr3R 7621555 intron CG34127 - chr3R 7621604 intron CG34127 - chr3R 7621652 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-714 1243 chr3R 7729467 7729499 chr3R 7737405 7737437 Stalker2 12 7937 2.0 1.5 1.8 4.3 7970 chr3R 7729467 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_12_7730001 chr3R_7730001 RAL-714 1244 chr3R 7793348 7793375 chr3R 7793427 7793454 7 79 1.0 2.5 1.8 2.5 106 chr3R 7793348 3` UTR CG10086 + chr3R 7793401 3` UTR CG10086 + chr3R 7793454 3` UTR CG10086 + chr3R_7_7790001 chr3R_7790001 RAL-714 1245 chr3R 7819870 7819892 chr3R 7822068 7822090 5 2198 7.5 9.0 8.2 0.5 2220 chr3R 7819870 intron CG34384 + chr3R 7820980 intron CG34384 + chr3R 7822090 intron CG34384 + chr3R_5_7820001 chr3R_7820001 RAL-714 1246 chr3R 7819925 7819952 chr3R 7822947 7822975 12 3022 10.5 31.0 20.8 0.6 3050 chr3R 7819925 intron CG34384 + chr3R 7821450 intron CG34384 + chr3R 7822975 intron CG34384 + chr3R_12_7820001 chr3R_7820001 RAL-714 1247 chr3R 7849651 7849672 chr3R 7850818 7850839 1360 7 1166 2.5 0.5 1.5 2.8 1188 chr3R 7849651 intron CG34384 + chr3R 7850245 intron CG34384 + chr3R 7850839 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-714 1248 chr3R 8013887 8013919 chr3R 8022851 8022884 5 8965 33.5 29.0 31.2 0.2 8997 chr3R 8013887 exon Pbp95 + chr3R 8018386 exon CG2747 - chr3R 8022884 exon CG2747 - chr3R_5_8015001 chr3R_8015001 RAL-714 1249 chr3R 8040649 8040671 chr3R 8040733 8040749 4 82 1.5 1.0 1.2 1.8 100 chr3R 8040649 intergenic not near genes chr3R 8040699 intergenic not near genes chr3R 8040749 intergenic CG43060 + chr3R_4_8040001 chr3R_8040001 RAL-714 1250 chr3R 8090279 8090297 chr3R 8090455 8090474 8 176 2.5 3.0 2.8 2.1 195 chr3R 8090279 5` UTR CR44330 + chr3R 8090376 intergenic CR44330 + chr3R 8090474 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-714 1251 chr3R 8207553 8207588 chr3R 8208398 8208433 F-element 9 841 1.5 2.0 1.8 3.2 880 chr3R 8207553 intergenic not near genes chr3R 8207993 intergenic not near genes chr3R 8208433 intergenic not near genes chr3R_9_8205001 chr3R_8205001 RAL-714 1252 chr3R 8327861 8327883 chr3R 8328007 8328029 5 146 1.5 4.0 2.8 1.3 168 chr3R 8327861 intron Poxm - chr3R 8327945 intron Poxm - chr3R 8328029 intron Poxm - chr3R_5_8325001 chr3R_8325001 RAL-714 1253 chr3R 8339246 8339247 chr3R 21907534 21907536 13 13568289 21.0 22.5 21.8 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-714 1254 chr3R 8393591 8393602 chr3R 8393667 8393686 7 77 3.0 2.0 2.5 2.0 95 chr3R 8393591 intron CG45263 - chr3R 8393638 intron CG45263 - chr3R 8393686 intron CG45263 - chr3R_7_8390001 chr3R_8390001 RAL-714 1255 chr3R 8403005 8403041 chr3R 8412171 8412207 roo 18 9166 3.0 4.0 3.5 4.0 9202 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_18_8405001 chr3R_8405001 RAL-714 1256 chr3R 8570482 8570506 chr3R 8575114 8575142 HMS-Beagle 9 4633 4.5 2.5 3.5 2.0 4660 chr3R 8570482 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575142 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-714 1257 chr3R 8601772 8601798 chr3R 8610925 8610951 roo 4 9153 6.0 2.0 4.0 0.8 9179 chr3R 8601772 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-714 1258 chr3R 8707361 8707388 chr3R 8709801 8709829 jockey 7 2441 2.0 3.0 2.5 2.0 2468 chr3R 8707361 intergenic not near genes chr3R 8708595 intergenic not near genes chr3R 8709829 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-714 1259 chr3R 8879793 8879824 chr3R 8879880 8879911 5 87 2.0 0.5 1.2 2.3 118 chr3R 8879793 intron pyd - chr3R 8879852 intron pyd - chr3R 8879911 intron pyd - chr3R_5_8875001 chr3R_8875001 RAL-714 1260 chr3R 9036374 9036383 chr3R 9036452 9036461 4 78 2.5 0.5 1.5 1.6 87 chr3R 9036374 intron neur - chr3R 9036418 intron neur - chr3R 9036461 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-714 1261 chr3R 9047738 9047772 chr3R 9048960 9048995 4 1223 18.0 18.5 18.2 0.2 1257 chr3R 9047738 intron,5` UTR Nmdmc -,Rel - chr3R 9048366 intron Nmdmc - chr3R 9048995 intron,intron Nmdmc -,Mst85C + chr3R_4_9045001 chr3R_9045001 RAL-714 1262 chr3R 9047422 9047447 chr3R 9049021 9049043 8 1597 24.0 18.0 21.0 0.4 1621 chr3R 9047422 intron,exon Nmdmc -,Rel - chr3R 9048232 intron Nmdmc - chr3R 9049043 intron,intron Nmdmc -,Mst85C + chr3R_8_9045001 chr3R_9045001 RAL-714 1263 chr3R 9065153 9065184 chr3R 9065234 9065266 13 81 2.5 4.0 3.2 3.1 113 chr3R 9065153 intergenic Ada +,beag - chr3R 9065210 5` UTR Ada + chr3R 9065266 exon Ada + chr3R_13_9065001 chr3R_9065001 RAL-714 1264 chr3R 9082048 9082071 chr3R 9082142 9082165 5 94 1.5 3.0 2.2 1.6 117 chr3R 9082048 intron pum - chr3R 9082106 intron pum - chr3R 9082165 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-714 1265 chr3R 9101838 9101850 chr3R 9101936 9101948 4 98 2.0 3.5 2.8 1.1 110 chr3R 9101838 intron pum - chr3R 9101893 intron pum - chr3R 9101948 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-714 1266 chr3R 9101852 9101869 chr3R 9101935 9101967 5 95 1.0 3.0 2.0 1.7 115 chr3R 9101852 intron pum - chr3R 9101910 intron pum - chr3R 9101967 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-714 1267 chr3R 9149450 9149470 chr3R 9149530 9149549 7 80 2.5 1.0 1.8 2.5 99 chr3R 9149450 intron pum - chr3R 9149500 intron pum - chr3R 9149549 intron pum - chr3R_7_9145001 chr3R_9145001 RAL-714 1268 chr3R 9319575 9319604 chr3R 9320009 9320039 jockey 5 434 3.5 4.0 3.8 1.0 464 chr3R 9319575 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320039 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-714 1269 chr3R 9361815 9361846 chr3R 9362056 9362087 pogo 4 241 1.0 2.0 1.5 1.6 272 chr3R 9361815 3` UTR CG45050 + chr3R 9361951 3` UTR CG45050 + chr3R 9362087 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-714 1270 chr3R 9382822 9382838 chr3R 9382947 9382963 5 124 2.0 1.0 1.5 2.0 141 chr3R 9382822 intron FER - chr3R 9382892 intron FER - chr3R 9382963 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-714 1271 chr3R 9611878 9611900 chr3R 9611959 9611982 6 79 4.5 0.0 2.2 1.9 104 chr3R 9611878 intron CG8312 + chr3R 9611930 intron CG8312 + chr3R 9611982 intron CG8312 + chr3R_6_9610001 chr3R_9610001 RAL-714 1272 chr3R 9699972 9700001 chr3R 9700061 9700090 1360 10 89 4.0 3.0 3.5 2.2 118 chr3R 9699972 intron Unc-115a - chr3R 9700031 intron Unc-115a - chr3R 9700090 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 RAL-714 1273 chr3R 9739919 9739945 chr3R 9741864 9741891 10 1946 10.5 16.0 13.2 0.7 1972 chr3R 9739919 5` UTR CG12950 - chr3R 9740905 5` UTR Pnn + chr3R 9741891 exon Pnn + chr3R_10_9740001 chr3R_9740001 RAL-714 1274 chr3R 9739238 9739263 chr3R 9742305 9742330 7 3067 23.5 13.5 18.5 0.4 3092 chr3R 9739238 intron CG12950 - chr3R 9740784 intergenic Pnn + chr3R 9742330 3` UTR Pnn + chr3R_7_9740001 chr3R_9740001 RAL-714 1275 chr3R 9765924 9765944 chr3R 9766000 9766019 11 76 2.5 5.5 4.0 2.2 95 chr3R 9765924 3` UTR CG8478 + chr3R 9765972 3` UTR CG8478 + chr3R 9766019 3` UTR CG8478 + chr3R_11_9765001 chr3R_9765001 RAL-714 1276 chr3R 9864358 9864379 chr3R 9864484 9864505 5 126 3.0 4.0 3.5 1.1 147 chr3R 9864358 intron Teh1 - chr3R 9864432 intron Teh1 - chr3R 9864505 intron Teh1 - chr3R_5_9860001 chr3R_9860001 RAL-714 1277 chr3R 9879641 9879670 chr3R 9879765 9879794 10 123 4.0 7.0 5.5 1.5 153 chr3R 9879641 intron Glut4EF + chr3R 9879718 intron Glut4EF + chr3R 9879794 intron Glut4EF + chr3R_10_9875001 chr3R_9875001 RAL-714 1278 chr3R 9884721 9884742 chr3R 9884808 9884832 9 89 5.0 5.0 5.0 1.5 111 chr3R 9884721 intron Glut4EF + chr3R 9884776 intron Glut4EF + chr3R 9884832 intron Glut4EF + chr3R_9_9880001 chr3R_9880001 RAL-714 1279 chr3R 9903471 9903495 chr3R 9903555 9903579 9 84 4.0 2.0 3.0 2.2 108 chr3R 9903471 intron Glut4EF + chr3R 9903525 intron Glut4EF + chr3R 9903579 intron Glut4EF + chr3R_9_9900001 chr3R_9900001 RAL-714 1280 chr3R 10174122 10174142 chr3R 10174204 10174224 6 82 4.0 3.5 3.8 1.2 102 chr3R 10174122 intron CG12814 - chr3R 10174173 intron CG12814 - chr3R 10174224 intron CG12814 - chr3R_6_10170001 chr3R_10170001 RAL-714 1281 chr3R 10231786 10231815 chr3R 10237362 10237392 mdg3 11 5577 0.0 1.5 0.8 6.1 5606 chr3R 10231786 intron CG42795 + chr3R 10234589 intron CG42795 + chr3R 10237392 intron CG42795 + chr3R_11_10230001 chr3R_10230001 RAL-714 1282 chr3R 10239160 10239179 chr3R 10239242 10239261 5 77 3.5 3.0 3.2 1.2 101 chr3R 10239160 intron CG42795 + chr3R 10239210 intron CG42795 + chr3R 10239261 intron CG42795 + chr3R_5_10235001 chr3R_10235001 RAL-714 1283 chr3R 10417478 10417491 chr3R 10417813 10417826 7 335 3.5 2.0 2.8 1.8 348 chr3R 10417478 intergenic not near genes chr3R 10417652 intergenic not near genes chr3R 10417826 intergenic not near genes chr3R_7_10415001 chr3R_10415001 RAL-714 1284 chr3R 10531879 10531900 chr3R 10531960 10531981 8 80 2.5 1.5 2.0 2.7 102 chr3R 10531879 intron hth - chr3R 10531930 intron hth - chr3R 10531981 intron hth - chr3R_8_10530001 chr3R_10530001 RAL-714 1285 chr3R 10646103 10646139 chr3R 10646254 10646290 6 151 0.5 2.5 1.5 2.4 187 chr3R 10646103 intergenic CR44018 + chr3R 10646196 intergenic CR44018 + chr3R 10646290 intergenic not near genes chr3R_6_10645001 chr3R_10645001 RAL-714 1286 chr3R 10723763 10723789 chr3R 10723855 10723881 8 92 1.5 0.5 1.0 4.0 118 chr3R 10723763 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723881 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-714 1287 chr3R 10727644 10727672 chr3R 10727724 10727752 12 80 2.0 4.5 3.2 2.9 108 chr3R 10727644 intergenic not near genes chr3R 10727698 intergenic not near genes chr3R 10727752 intergenic not near genes chr3R_12_10725001 chr3R_10725001 RAL-714 1288 chr3R 10732324 10732343 chr3R 10733196 10733215 6 872 3.0 3.5 3.2 1.4 891 chr3R 10732324 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-714 1289 chr3R 10745432 10745455 chr3R 10745519 10745542 6 87 3.0 1.5 2.2 1.9 110 chr3R 10745432 intron TkR86C - chr3R 10745487 intron TkR86C - chr3R 10745542 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-714 1290 chr3R 10817223 10817252 chr3R 10817306 10817335 5 82 0.5 3.5 2.0 1.7 112 chr3R 10817223 3` UTR CG4089 + chr3R 10817279 3` UTR CG4089 + chr3R 10817335 3` UTR CG4089 + chr3R_5_10815001 chr3R_10815001 RAL-714 1291 chr3R 10868596 10868618 chr3R 10868674 10868695 4 76 2.5 1.5 2.0 1.3 99 chr3R 10868596 5` UTR SelR - chr3R 10868646 intergenic SelR -,Tsp86D + chr3R 10868695 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-714 1292 chr3R 10919690 10919710 chr3R 10919767 10919788 5 78 3.0 1.5 2.2 1.6 98 chr3R 10919690 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919788 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-714 1293 chr3R 10920051 10920079 chr3R 10920129 10920157 5 78 2.0 6.0 4.0 1.0 106 chr3R 10920051 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-714 1294 chr3R 10994283 10994311 chr3R 10994362 10994390 9 77 1.5 3.0 2.2 2.8 107 chr3R 10994283 intron CG34114 + chr3R 10994336 intron CG34114 + chr3R 10994390 intron CG34114 + chr3R_9_10990001 chr3R_10990001 RAL-714 1295 chr3R 11078947 11078975 chr3R 11079027 11079055 5 80 2.0 2.0 2.0 1.7 108 chr3R 11078947 intergenic not near genes chr3R 11079001 intergenic not near genes chr3R 11079055 intergenic not near genes chr3R_5_11075001 chr3R_11075001 RAL-714 1296 chr3R 11085473 11085492 chr3R 11085549 11085569 4 76 0.0 2.0 1.0 2.0 96 chr3R 11085473 3` UTR CR44940 - chr3R 11085521 intergenic CR44940 - chr3R 11085569 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-714 1297 chr3R 11102325 11102354 chr3R 11102406 11102428 6 78 0.5 8.0 4.2 1.2 103 chr3R 11102325 intergenic not near genes chr3R 11102376 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-714 1298 chr3R 11149872 11149901 chr3R 11149969 11149998 9 95 4.5 3.0 3.8 1.9 126 chr3R 11149872 intergenic not near genes chr3R 11149935 intergenic not near genes chr3R 11149998 intergenic not near genes chr3R_9_11145001 chr3R_11145001 RAL-714 1299 chr3R 11151667 11151669 chr3R 11156560 11156587 5 4898 21.0 7.5 14.2 0.3 4920 chr3R 11151667 3` UTR Ugt86Di - chr3R 11154127 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156587 intergenic Ugt86Dc + chr3R_5_11150001 chr3R_11150001 RAL-714 1300 chr3R 11302738 11302748 chr3R 11302819 11302830 5 81 3.0 4.5 3.8 1.0 92 chr3R 11302738 intron CR31386 - chr3R 11302784 intron CR31386 - chr3R 11302830 intron CR31386 - chr3R_5_11300001 chr3R_11300001 RAL-714 1301 chr3R 11307190 11307209 chr3R 11307277 11307293 5 85 4.0 2.5 3.2 1.2 103 chr3R 11307190 intergenic not near genes chr3R 11307242 intergenic not near genes chr3R 11307293 intergenic not near genes chr3R_5_11305001 chr3R_11305001 RAL-714 1302 chr3R 11342542 11342572 chr3R 11342618 11342647 4 76 1.0 4.0 2.5 1.1 105 chr3R 11342542 intron pros + chr3R 11342594 intron pros + chr3R 11342647 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-714 1303 chr3R 11379239 11379268 chr3R 11388394 11388423 roo 10 9155 3.5 5.0 4.2 1.9 9184 chr3R 11379239 intron pros + chr3R 11383831 intron pros + chr3R 11388423 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-714 1304 chr3R 11481567 11481576 chr3R 11481649 11481656 4 81 5.0 3.0 4.0 0.8 89 chr3R 11481567 intergenic not near genes chr3R 11481612 intergenic not near genes chr3R 11481656 intergenic not near genes chr3R_4_11480001 chr3R_11480001 RAL-714 1305 chr3R 11491606 11491626 chr3R 11491682 11491702 4 76 1.0 1.0 1.0 2.0 96 chr3R 11491606 intergenic not near genes chr3R 11491654 intergenic not near genes chr3R 11491702 intergenic not near genes chr3R_4_11490001 chr3R_11490001 RAL-714 1306 chr3R 11594202 11594207 chr3R 11594279 11594282 4 76 5.5 2.5 4.0 0.8 80 chr3R 11594202 intron Jupiter - chr3R 11594242 intron Jupiter - chr3R 11594282 intron Jupiter - chr3R_4_11590001 chr3R_11590001 RAL-714 1307 chr3R 11694725 11694753 chr3R 11694817 11694846 8 93 1.0 2.5 1.8 2.9 121 chr3R 11694725 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694846 intergenic not near genes chr3R_8_11690001 chr3R_11690001 RAL-714 1308 chr3R 11707400 11707431 chr3R 11707717 11707748 11 316 3.0 5.5 4.2 2.1 348 chr3R 11707400 intergenic not near genes chr3R 11707574 intergenic not near genes chr3R 11707748 intergenic not near genes chr3R_11_11705001 chr3R_11705001 RAL-714 1309 chr3R 11734163 11734189 chr3R 11734282 11734308 4 119 1.5 1.5 1.5 1.6 145 chr3R 11734163 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734308 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-714 1310 chr3R 11841075 11841095 chr3R 11846266 11846286 BS 5 5191 1.0 2.5 1.8 1.8 5211 chr3R 11841075 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-714 1311 chr3R 12022884 12022908 chr3R 12025061 12025085 pogo 9 2176 2.5 6.0 4.2 1.7 2201 chr3R 12022884 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025085 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-714 1312 chr3R 12039137 12039164 chr3R 12039346 12039373 9 208 2.5 3.5 3.0 2.2 236 chr3R 12039137 intergenic not near genes chr3R 12039255 intergenic not near genes chr3R 12039373 intergenic not near genes chr3R_9_12035001 chr3R_12035001 RAL-714 1313 chr3R 12040281 12040313 chr3R 12040364 12040397 10 84 1.0 0.5 0.8 5.6 116 chr3R 12040281 intergenic CG14736 + chr3R 12040339 intergenic CG14736 + chr3R 12040397 intergenic CG14736 + chr3R_10_12040001 chr3R_12040001 RAL-714 1314 chr3R 12081996 12082030 chr3R 12082071 12082106 5 76 3.0 2.0 2.5 1.4 110 chr3R 12081996 intron CG14741 - chr3R 12082051 intron CG14741 - chr3R 12082106 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-714 1315 chr3R 12154030 12154063 chr3R 12154456 12154489 6 428 15.0 20.5 17.8 0.3 459 chr3R 12154030 intron dpr15 - chr3R 12154260 intron dpr15 - chr3R 12154489 intron dpr15 - chr3R_6_12150001 chr3R_12150001 RAL-714 1316 chr3R 12183180 12183202 chr3R 12183266 12183288 8 86 2.5 1.5 2.0 2.7 108 chr3R 12183180 intergenic not near genes chr3R 12183234 intergenic not near genes chr3R 12183288 intergenic not near genes chr3R_8_12180001 chr3R_12180001 RAL-714 1317 chr3R 12267571 12267861 chr3R 12267842 12267941 4 223 0.0 0.0 0.0 4.0 370 chr3R 12267571 intron svp + chr3R 12267756 intron svp + chr3R 12267941 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-714 1318 chr3R 12267876 12267889 chr3R 12267956 12267969 5 80 0.0 1.5 0.8 2.8 93 chr3R 12267876 intron svp + chr3R 12267922 intron svp + chr3R 12267969 intron svp + chr3R_5_12265001 chr3R_12265001 RAL-714 1319 chr3R 12348831 12348863 chr3R 12348909 12348933 11 77 4.5 1.5 3.0 2.8 102 chr3R 12348831 intergenic CG10038 - chr3R 12348882 intergenic CG10038 - chr3R 12348933 intergenic CG10038 - chr3R_11_12345001 chr3R_12345001 RAL-714 1320 chr3R 12376396 12376419 chr3R 12376481 12376505 8 86 2.0 1.5 1.8 2.9 109 chr3R 12376396 exon GstD5 + chr3R 12376450 3` UTR GstD5 + chr3R 12376505 3` UTR GstD5 + chr3R_8_12375001 chr3R_12375001 RAL-714 1321 chr3R 12546452 12546486 chr3R 12546535 12546569 11 83 4.5 1.5 3.0 2.8 117 chr3R 12546452 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546569 intron Octbeta3R - chr3R_11_12545001 chr3R_12545001 RAL-714 1322 chr3R 12599372 12599407 chr3R 12599455 12599490 7 82 0.5 2.5 1.5 2.8 118 chr3R 12599372 intergenic not near genes chr3R 12599431 intergenic not near genes chr3R 12599490 intergenic not near genes chr3R_7_12595001 chr3R_12595001 RAL-714 1323 chr3R 12763129 12763139 chr3R 12763206 12763216 4 77 0.0 0.0 0.0 4.0 87 chr3R 12763129 intron beat-Vc - chr3R 12763172 intron beat-Vc - chr3R 12763216 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-714 1324 chr3R 12814241 12814254 chr3R 12814317 12814331 7 77 3.0 1.0 2.0 2.3 90 chr3R 12814241 intron CG31345 - chr3R 12814286 intron CG31345 - chr3R 12814331 intron CG31345 - chr3R_7_12810001 chr3R_12810001 RAL-714 1325 chr3R 12825834 12825853 chr3R 12825908 12825933 10 74 4.5 6.5 5.5 1.5 99 chr3R 12825834 intergenic not near genes chr3R 12825884 intergenic not near genes chr3R 12825933 intergenic not near genes chr3R_10_12825001 chr3R_12825001 RAL-714 1326 chr3R 12853137 12853173 chr3R 12853224 12853260 8 82 4.0 0.5 2.2 2.5 123 chr3R 12853137 intergenic not near genes chr3R 12853198 intergenic not near genes chr3R 12853260 intergenic not near genes chr3R_8_12850001 chr3R_12850001 RAL-714 1327 chr3R 12920153 12920183 chr3R 12925356 12925386 copia 5 5203 0.5 1.5 1.0 2.5 5233 chr3R 12920153 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-714 1328 chr3R 12943977 12944010 chr3R 12944064 12944097 7 87 0.0 4.0 2.0 2.3 120 chr3R 12943977 intergenic not near genes chr3R 12944037 intergenic not near genes chr3R 12944097 intergenic not near genes chr3R_7_12940001 chr3R_12940001 RAL-714 1329 chr3R 12952280 12952315 chr3R 12952405 12952439 15 123 2.0 5.5 3.8 3.1 159 chr3R 12952280 intron grsm - chr3R 12952360 intron grsm - chr3R 12952439 intron grsm - chr3R_15_12950001 chr3R_12950001 RAL-714 1330 chr3R 13037988 13038000 chr3R 13038138 13038138 4 147 0.5 0.0 0.2 3.3 150 chr3R 13037988 3` UTR ry + chr3R 13038063 intergenic ry +,CG11668 + chr3R 13038138 intergenic ry +,CG11668 + chr3R_4_13035001 chr3R_13035001 RAL-714 1331 chr3R 13075359 13075382 chr3R 13075440 13075463 4 81 2.0 3.0 2.5 1.1 104 chr3R 13075359 intron sim + chr3R 13075411 intron sim + chr3R 13075463 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-714 1332 chr3R 13120782 13120800 chr3R 13120850 13120877 4 74 1.5 2.0 1.8 1.4 95 chr3R 13120782 intron timeout + chr3R 13120830 intron timeout + chr3R 13120877 intron timeout + chr3R_4_13120001 chr3R_13120001 RAL-714 1333 chr3R 13143043 13143066 chr3R 13148619 13148630 mdg3 10 5571 1.0 4.5 2.8 2.6 5587 chr3R 13143043 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148630 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13145001 chr3R_13145001 RAL-714 1334 chr3R 13164547 13164566 chr3R 13165626 13165646 4 1080 9.0 13.0 11.0 0.3 1099 chr3R 13164547 intergenic not near genes chr3R 13165096 intergenic not near genes chr3R 13165646 intergenic not near genes chr3R_4_13165001 chr3R_13165001 RAL-714 1335 chr3R 13163293 13163319 chr3R 13165908 13165932 8 2613 25.5 24.0 24.8 0.3 2639 chr3R 13163293 exon timeout + chr3R 13164612 intergenic not near genes chr3R 13165932 intergenic not near genes chr3R_8_13160001 chr3R_13160001 RAL-714 1336 chr3R 13173447 13173472 chr3R 13173526 13173554 16 80 4.5 2.0 3.2 3.8 107 chr3R 13173447 intergenic not near genes chr3R 13173500 intergenic not near genes chr3R 13173554 intergenic not near genes chr3R_16_13170001 chr3R_13170001 RAL-714 1337 chr3R 13192740 13192761 chr3R 13192819 13192850 8 85 1.0 5.0 3.0 2.0 110 chr3R 13192740 intergenic CG8141 + chr3R 13192795 intergenic CG8141 + chr3R 13192850 intergenic CG8141 + chr3R_8_13190001 chr3R_13190001 RAL-714 1338 chr3R 13195956 13195983 chr3R 13196051 13196078 10 94 3.0 1.5 2.2 3.1 122 chr3R 13195956 intergenic not near genes chr3R 13196017 intergenic not near genes chr3R 13196078 intergenic not near genes chr3R_10_13195001 chr3R_13195001 RAL-714 1339 chr3R 13199269 13199302 chr3R 13199352 13199385 9 83 1.0 2.5 1.8 3.2 116 chr3R 13199269 intergenic not near genes chr3R 13199327 intergenic not near genes chr3R 13199385 intergenic not near genes chr3R_9_13195001 chr3R_13195001 RAL-714 1340 chr3R 13241384 13241410 chr3R 13241538 13241564 4 154 2.0 3.0 2.5 1.1 180 chr3R 13241384 intron Ace - chr3R 13241474 intron Ace - chr3R 13241564 intron Ace - chr3R_4_13240001 chr3R_13240001 RAL-714 1341 chr3R 13274211 13274235 chr3R 13274290 13274314 7 78 3.5 0.0 1.8 2.5 103 chr3R 13274211 intergenic not near genes chr3R 13274262 intergenic not near genes chr3R 13274314 intergenic not near genes chr3R_7_13270001 chr3R_13270001 RAL-714 1342 chr3R 13323957 13323985 chr3R 13324068 13324096 9 110 3.5 1.5 2.5 2.6 139 chr3R 13323957 intergenic not near genes chr3R 13324026 intergenic not near genes chr3R 13324096 intergenic not near genes chr3R_9_13320001 chr3R_13320001 RAL-714 1343 chr3R 13326938 13326958 chr3R 13327033 13327053 6 95 2.0 1.0 1.5 2.4 115 chr3R 13326938 intergenic not near genes chr3R 13326996 intergenic not near genes chr3R 13327053 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-714 1344 chr3R 13554154 13554172 chr3R 13554233 13554251 7 77 2.5 2.5 2.5 2.0 97 chr3R 13554154 intergenic not near genes chr3R 13554202 intergenic not near genes chr3R 13554251 intergenic not near genes chr3R_7_13550001 chr3R_13550001 RAL-714 1345 chr3R 13599067 13599089 chr3R 13599145 13599169 4 80 0.0 1.5 0.8 2.2 102 chr3R 13599067 intergenic not near genes chr3R 13599118 intergenic not near genes chr3R 13599169 intergenic not near genes chr3R_4_13595001 chr3R_13595001 RAL-714 1346 chr3R 13617736 13617768 chr3R 13617854 13617886 6 118 1.5 3.5 2.5 1.7 150 chr3R 13617736 intergenic CR45680 - chr3R 13617811 3` UTR CR45680 - chr3R 13617886 3` UTR CR45680 - chr3R_6_13615001 chr3R_13615001 RAL-714 1347 chr3R 13625701 13625723 chr3R 13625782 13625804 4 81 1.0 2.0 1.5 1.6 103 chr3R 13625701 intergenic not near genes chr3R 13625752 intergenic not near genes chr3R 13625804 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-714 1348 chr3R 13659722 13659844 chr3R 13659828 13659933 4 102 0.0 0.0 0.0 4.0 211 chr3R 13659722 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659933 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-714 1349 chr3R 13672939 13672977 chr3R 13673017 13673055 8 76 1.5 1.5 1.5 3.2 116 chr3R 13672939 intron Task6 - chr3R 13672997 intron Task6 - chr3R 13673055 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-714 1350 chr3R 13693028 13693028 chr3R 21907534 21907536 6 8214507 12.0 22.5 17.2 0.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-714 1351 chr3R 13782051 13782079 chr3R 13782132 13782160 5 81 2.0 0.5 1.2 2.3 109 chr3R 13782051 exon CG9286 + chr3R 13782106 intergenic CG9286 +,Dip-B + chr3R 13782160 intergenic CG9286 +,Dip-B + chr3R_5_13780001 chr3R_13780001 RAL-714 1352 chr3R 14070129 14070144 chr3R 14070210 14070225 9 81 4.5 9.5 7.0 1.1 96 chr3R 14070129 intron foxo + chr3R 14070177 intron foxo + chr3R 14070225 intron foxo + chr3R_9_14070001 chr3R_14070001 RAL-714 1353 chr3R 14083408 14083431 chr3R 14083509 14083532 10 100 2.0 0.0 1.0 5.0 124 chr3R 14083408 intron foxo + chr3R 14083470 intron foxo + chr3R 14083532 intron foxo + chr3R_10_14080001 chr3R_14080001 RAL-714 1354 chr3R 14117447 14117464 chr3R 14117523 14117540 4 76 4.0 0.5 2.2 1.2 93 chr3R 14117447 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117540 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-714 1355 chr3R 14175434 14175453 chr3R 14175757 14175776 6 323 3.0 4.5 3.8 1.2 342 chr3R 14175434 3` UTR Dop1R1 - chr3R 14175605 3` UTR Dop1R1 - chr3R 14175776 3` UTR Dop1R1 - chr3R_6_14175001 chr3R_14175001 RAL-714 1356 chr3R 14180817 14180837 chr3R 14185582 14185602 F-element 6 4764 0.0 5.5 2.8 1.6 4785 chr3R 14180817 intron Dop1R1 - chr3R 14183210 intron Dop1R1 - chr3R 14185602 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-714 1357 chr3R 14364064 14364086 chr3R 14364140 14364162 5 75 5.0 2.0 3.5 1.1 98 chr3R 14364064 intron NK7.1 - chr3R 14364113 intron NK7.1 - chr3R 14364162 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-714 1358 chr3R 14543597 14543629 chr3R 14543677 14543709 12 80 3.0 1.5 2.2 3.8 112 chr3R 14543597 intron Pde6 - chr3R 14543653 intron Pde6 - chr3R 14543709 intron Pde6 - chr3R_12_14540001 chr3R_14540001 RAL-714 1359 chr3R 14662314 14662340 chr3R 14662395 14662418 6 80 2.5 3.0 2.8 1.6 104 chr3R 14662314 exon Rad17 - chr3R 14662366 intron Rad17 - chr3R 14662418 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-714 1360 chr3R 14685786 14685806 chr3R 14685867 14685886 5 81 4.5 1.0 2.8 1.3 100 chr3R 14685786 intron Meltrin - chr3R 14685836 intron Meltrin - chr3R 14685886 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-714 1361 chr3R 14704385 14704419 chr3R 14704462 14704495 9 77 3.5 0.0 1.8 3.2 110 chr3R 14704385 intron kibra - chr3R 14704440 intron kibra - chr3R 14704495 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-714 1362 chr3R 14995718 14995731 chr3R 14995795 14995809 6 82 2.0 6.0 4.0 1.2 91 chr3R 14995718 intergenic not near genes chr3R 14995764 intergenic not near genes chr3R 14995809 intergenic not near genes chr3R_6_14995001 chr3R_14995001 RAL-714 1363 chr3R 15059276 15059478 chr3R 15059470 15059565 BS 4 114 0.0 0.0 0.0 4.0 289 chr3R 15059276 intron dpr9 - chr3R 15059420 intron dpr9 - chr3R 15059565 intron dpr9 - chr3R_4_15055001 chr3R_15055001 RAL-714 1364 chr3R 15079807 15079838 chr3R 15080048 15080079 pogo 7 241 1.5 2.0 1.8 2.5 272 chr3R 15079807 3` UTR CG6966 - chr3R 15079943 3` UTR CG6966 - chr3R 15080079 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-714 1365 chr3R 15102494 15102531 chr3R 15109751 15109786 412 9 7256 1.5 4.0 2.8 2.4 7292 chr3R 15102494 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109786 intron CG42788 - chr3R_9_15105001 chr3R_15105001 RAL-714 1366 chr3R 15119538 15119562 chr3R 15119619 15119643 6 78 4.0 1.0 2.5 1.7 105 chr3R 15119538 intron CG42788 - chr3R 15119590 intron CG42788 - chr3R 15119643 intron CG42788 - chr3R_6_15115001 chr3R_15115001 RAL-714 1367 chr3R 15132057 15132082 chr3R 15135117 15135142 Juan 13 3059 10.0 11.0 10.5 1.1 3085 chr3R 15132057 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135142 3` UTR CG6912 - chr3R_13_15130001 chr3R_15130001 RAL-714 1368 chr3R 15162549 15162559 chr3R 15167316 15167327 F-element 4 4766 1.0 0.5 0.8 2.2 4778 chr3R 15162549 intron Gyc88E + chr3R 15164938 intron Gyc88E + chr3R 15167327 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-714 1369 chr3R 15302234 15302236 chr3R 15302319 15302321 4 86 5.5 3.5 4.5 0.7 87 chr3R 15302234 intron Tm1 + chr3R 15302278 intron Tm1 + chr3R 15302321 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-714 1370 chr3R 15416257 15416284 chr3R 15416335 15416364 5 79 0.5 3.0 1.8 1.8 107 chr3R 15416257 3` UTR Atx2 + chr3R 15416310 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-714 1371 chr3R 15594654 15594667 chr3R 15594737 15594750 6 83 0.0 4.0 2.0 2.0 96 chr3R 15594654 intergenic not near genes chr3R 15594702 intergenic not near genes chr3R 15594750 intergenic not near genes chr3R_6_15590001 chr3R_15590001 RAL-714 1372 chr3R 15601163 15601190 chr3R 15608685 15608712 412 10 7522 3.0 2.5 2.8 2.6 7549 chr3R 15601163 intergenic not near genes chr3R 15604938 intergenic not near genes chr3R 15608712 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-714 1373 chr3R 15618731 15618756 chr3R 15626204 15626230 blood 8 7474 4.0 2.5 3.2 1.9 7499 chr3R 15618731 intergenic not near genes chr3R 15622480 intergenic not near genes chr3R 15626230 intergenic not near genes chr3R_8_15620001 chr3R_15620001 RAL-714 1374 chr3R 15646789 15646799 chr3R 15646872 15646882 4 83 0.5 4.0 2.2 1.2 93 chr3R 15646789 intergenic not near genes chr3R 15646836 intergenic not near genes chr3R 15646882 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-714 1375 chr3R 15691183 15691327 chr3R 15691287 15691414 12 94 0.0 0.0 0.0 12.0 231 chr3R 15691183 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691414 intergenic not near genes chr3R_12_15690001 chr3R_15690001 RAL-714 1376 chr3R 16011049 16011077 chr3R 16011158 16011196 5 117 3.0 1.0 2.0 1.7 147 chr3R 16011049 intron GATAe + chr3R 16011122 intron GATAe + chr3R 16011196 intron GATAe + chr3R_5_16010001 chr3R_16010001 RAL-714 1377 chr3R 16048860 16048881 chr3R 16048943 16048953 7 85 1.5 1.0 1.2 3.2 93 chr3R 16048860 intron ird5 - chr3R 16048906 intron ird5 - chr3R 16048953 intron ird5 - chr3R_7_16045001 chr3R_16045001 RAL-714 1378 chr3R 16179079 16179106 chr3R 16179202 16179229 5 123 2.0 1.0 1.5 2.0 150 chr3R 16179079 intron CG8925 + chr3R 16179154 intron CG8925 + chr3R 16179229 intron CG8925 + chr3R_5_16175001 chr3R_16175001 RAL-714 1379 chr3R 16260936 16260956 chr3R 16261077 16261097 9 141 5.0 0.0 2.5 2.6 161 chr3R 16260936 intergenic bor - chr3R 16261016 intergenic bor - chr3R 16261097 intergenic bor - chr3R_9_16260001 chr3R_16260001 RAL-714 1380 chr3R 16472581 16472599 chr3R 16472657 16472674 5 75 8.0 7.0 7.5 0.6 93 chr3R 16472581 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-714 1381 chr3R 16756319 16756348 chr3R 16762510 16762525 diver 13 6189 0.0 1.5 0.8 7.2 6206 chr3R 16756319 intron bxd - chr3R 16759422 intron bxd - chr3R 16762525 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-714 1382 chr3R 16860334 16860370 chr3R 16860412 16860448 5 78 1.0 0.0 0.5 3.3 114 chr3R 16860334 intron iab-8 - chr3R 16860391 intron iab-8 - chr3R 16860448 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-714 1383 chr3R 16921829 16921858 chr3R 16921913 16921942 4 84 1.0 2.0 1.5 1.6 113 chr3R 16921829 intron iab-8 - chr3R 16921886 intron iab-8 - chr3R 16921942 intron iab-8 - chr3R_4_16920001 chr3R_16920001 RAL-714 1384 chr3R 17012964 17012983 chr3R 17013040 17013059 9 76 2.5 4.0 3.2 2.1 95 chr3R 17012964 intergenic CG8907 + chr3R 17013012 intergenic CG8907 + chr3R 17013059 intergenic not near genes chr3R_9_17010001 chr3R_17010001 RAL-714 1385 chr3R 17242660 17242692 chr3R 17242742 17242774 13 81 1.5 2.0 1.8 4.6 114 chr3R 17242660 intron beat-IIb - chr3R 17242717 intron beat-IIb - chr3R 17242774 intron beat-IIb - chr3R_13_17240001 chr3R_17240001 RAL-714 1386 chr3R 17335158 17335180 chr3R 17335234 17335255 9 75 3.0 0.5 1.8 3.2 97 chr3R 17335158 intron beat-IIa - chr3R 17335206 intron beat-IIa - chr3R 17335255 intron beat-IIa - chr3R_9_17335001 chr3R_17335001 RAL-714 1387 chr3R 17346246 17346247 chr3R 21907534 21907536 5 4561288 14.0 22.5 18.2 0.3 4561290 chr3R 17346246 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_5_19625001 chr3R_19625001 RAL-714 1388 chr3R 17346680 17346721 chr3R 17348243 17348265 F-element 10 1561 1.0 2.5 1.8 3.6 1585 chr3R 17346680 intron beat-IIa - chr3R 17347472 intron beat-IIa - chr3R 17348265 intron beat-IIa - chr3R_10_17345001 chr3R_17345001 RAL-714 1389 chr3R 17355491 17355521 chr3R 17355569 17355598 11 78 3.5 3.5 3.5 2.4 107 chr3R 17355491 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355598 intron beat-IIa - chr3R_11_17355001 chr3R_17355001 RAL-714 1390 chr3R 17369898 17369922 chr3R 17370008 17370032 5 110 1.0 4.5 2.8 1.3 134 chr3R 17369898 intergenic not near genes chr3R 17369965 intergenic not near genes chr3R 17370032 intergenic not near genes chr3R_5_17365001 chr3R_17365001 RAL-714 1391 chr3R 17504811 17504844 chr3R 17504972 17505005 8 160 3.0 5.5 4.2 1.5 194 chr3R 17504811 intron Dscam3 - chr3R 17504908 intron Dscam3 - chr3R 17505005 intron Dscam3 - chr3R_8_17500001 chr3R_17500001 RAL-714 1392 chr3R 17517632 17517653 chr3R 17517765 17517787 7 133 2.0 3.5 2.8 1.8 155 chr3R 17517632 intergenic not near genes chr3R 17517710 intergenic CR44349 - chr3R 17517787 intergenic CR44349 - chr3R_7_17515001 chr3R_17515001 RAL-714 1393 chr3R 17521570 17521583 chr3R 17521730 17521743 4 159 1.5 5.0 3.2 1.0 173 chr3R 17521570 intergenic not near genes chr3R 17521656 intergenic not near genes chr3R 17521743 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-714 1394 chr3R 17522021 17522048 chr3R 17522110 17522138 4 89 2.5 4.0 3.2 1.0 117 chr3R 17522021 intergenic not near genes chr3R 17522080 intergenic not near genes chr3R 17522138 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-714 1395 chr3R 17522051 17522226 chr3R 17522108 17522319 6 87 5.0 4.0 4.5 1.1 268 chr3R 17522051 intergenic not near genes chr3R 17522185 intergenic not near genes chr3R 17522319 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-714 1396 chr3R 17591284 17591319 chr3R 17591720 17591751 F-element 9 435 4.0 1.0 2.5 2.6 467 chr3R 17591284 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591751 intergenic not near genes chr3R_9_17590001 chr3R_17590001 RAL-714 1397 chr3R 17625924 17625930 chr3R 17626001 17626006 4 76 6.0 0.0 3.0 1.0 82 chr3R 17625924 exon AttD + chr3R 17625965 3` UTR AttD + chr3R 17626006 3` UTR AttD + chr3R_4_17625001 chr3R_17625001 RAL-714 1398 chr3R 17714685 17714695 chr3R 17714744 17714775 4 74 3.5 2.0 2.8 1.1 90 chr3R 17714685 intron osa - chr3R 17714730 intron osa - chr3R 17714775 intron osa - chr3R_4_17710001 chr3R_17710001 RAL-714 1399 chr3R 17743218 17743243 chr3R 17743296 17743324 7 78 2.0 1.5 1.8 2.5 106 chr3R 17743218 intron TyrRII + chr3R 17743271 intron TyrRII + chr3R 17743324 intron TyrRII + chr3R_7_17740001 chr3R_17740001 RAL-714 1400 chr3R 17811196 17811222 chr3R 17811276 17811302 5 80 1.0 0.0 0.5 3.3 106 chr3R 17811196 intergenic CG18012 -,tinc + chr3R 17811249 intergenic CG18012 -,tinc + chr3R 17811302 intergenic CG18012 -,tinc + chr3R_5_17810001 chr3R_17810001 RAL-714 1401 chr3R 17823201 17823219 chr3R 17823278 17823296 4 77 0.5 2.0 1.2 1.8 95 chr3R 17823201 intron tinc + chr3R 17823248 intron tinc + chr3R 17823296 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-714 1402 chr3R 17845204 17845218 chr3R 17845281 17845295 7 76 3.5 5.0 4.2 1.3 91 chr3R 17845204 intron tinc + chr3R 17845250 intron tinc + chr3R 17845295 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-714 1403 chr3R 17899090 17899098 chr3R 17899168 17899176 5 78 1.5 0.0 0.8 2.8 86 chr3R 17899090 intron Rim - chr3R 17899133 intron Rim - chr3R 17899176 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-714 1404 chr3R 17925860 17925889 chr3R 17927326 17927356 hobo 17 1465 3.0 5.5 4.2 3.3 1496 chr3R 17925860 intron cpo + chr3R 17926608 intron cpo + chr3R 17927356 intron cpo + chr3R_17_17925001 chr3R_17925001 RAL-714 1405 chr3R 17938467 17938496 chr3R 17938549 17938577 13 82 2.5 3.0 2.8 3.4 110 chr3R 17938467 intron cpo + chr3R 17938522 intron cpo + chr3R 17938577 intron cpo + chr3R_13_17935001 chr3R_17935001 RAL-714 1406 chr3R 18025343 18025362 chr3R 18025424 18025443 4 81 3.5 2.0 2.8 1.1 100 chr3R 18025343 3` UTR CG7794 + chr3R 18025393 intergenic CG7794 + chr3R 18025443 intergenic CG7794 + chr3R_4_18025001 chr3R_18025001 RAL-714 1407 chr3R 18032783 18032805 chr3R 18040455 18040477 opus 6 7673 1.0 0.0 0.5 4.0 7694 chr3R 18032783 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040477 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-714 1408 chr3R 18058385 18058413 chr3R 18058492 18058520 8 107 1.0 0.5 0.8 4.4 135 chr3R 18058385 intergenic not near genes chr3R 18058452 intergenic not near genes chr3R 18058520 intergenic not near genes chr3R_8_18055001 chr3R_18055001 RAL-714 1409 chr3R 18303684 18303717 chr3R 18303771 18303784 10 81 2.5 4.5 3.5 2.2 100 chr3R 18303684 3` UTR PKD - chr3R 18303734 3` UTR PKD - chr3R 18303784 3` UTR PKD - chr3R_10_18300001 chr3R_18300001 RAL-714 1410 chr3R 18501597 18501626 chr3R 18501678 18501707 7 81 1.0 4.0 2.5 2.0 110 chr3R 18501597 intron fru - chr3R 18501652 intron fru - chr3R 18501707 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-714 1411 chr3R 18528366 18528401 chr3R 18528453 18528488 12 86 2.5 1.0 1.8 4.3 122 chr3R 18528366 intron fru - chr3R 18528427 intron fru - chr3R 18528488 intron fru - chr3R_12_18525001 chr3R_18525001 RAL-714 1412 chr3R 18606505 18606526 chr3R 18610737 18610758 F-element 5 4232 3.5 4.5 4.0 1.0 4253 chr3R 18606505 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610758 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-714 1413 chr3R 18697528 18697550 chr3R 18697693 18697715 6 165 1.5 3.0 2.2 1.9 187 chr3R 18697528 intergenic not near genes chr3R 18697622 intergenic not near genes chr3R 18697715 intergenic not near genes chr3R_6_18695001 chr3R_18695001 RAL-714 1414 chr3R 18703289 18703312 chr3R 18703397 18703419 6 108 2.0 0.0 1.0 3.0 130 chr3R 18703289 intergenic not near genes chr3R 18703354 intergenic not near genes chr3R 18703419 intergenic not near genes chr3R_6_18700001 chr3R_18700001 RAL-714 1415 chr3R 18802127 18802158 chr3R 18802212 18802243 7 85 2.5 2.5 2.5 2.0 116 chr3R 18802127 3` UTR CG18208 - chr3R 18802185 3` UTR CG18208 - chr3R 18802243 3` UTR CG18208 - chr3R_7_18800001 chr3R_18800001 RAL-714 1416 chr3R 18812075 18812106 chr3R 18812152 18812184 11 78 2.5 2.5 2.5 3.1 109 chr3R 18812075 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-714 1417 chr3R 18860126 18860152 chr3R 18860212 18860237 4 86 1.5 1.0 1.2 1.8 111 chr3R 18860126 intergenic not near genes chr3R 18860182 intergenic not near genes chr3R 18860237 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-714 1418 chr3R 18965209 18965234 chr3R 18965401 18965422 6 190 2.5 1.5 2.0 2.0 213 chr3R 18965209 intron,intron CG42613 +,CG43732 + chr3R 18965316 intron,intron CG42613 +,CG43732 + chr3R 18965422 intron,intron CG42613 +,CG43732 + chr3R_6_18965001 chr3R_18965001 RAL-714 1419 chr3R 19014092 19014120 chr3R 19014171 19014200 10 79 3.0 1.5 2.2 3.1 108 chr3R 19014092 intron gukh + chr3R 19014146 intron gukh + chr3R 19014200 intron gukh + chr3R_10_19010001 chr3R_19010001 RAL-714 1420 chr3R 19106820 19106844 chr3R 19106910 19106916 5 85 2.5 0.0 1.2 2.3 96 chr3R 19106820 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106916 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-714 1421 chr3R 19140262 19140298 chr3R 19140710 19140745 9 447 2.0 1.5 1.8 3.2 483 chr3R 19140262 3` UTR Ppcs - chr3R 19140504 3` UTR Ppcs - chr3R 19140745 3` UTR Ppcs - chr3R_9_19140001 chr3R_19140001 RAL-714 1422 chr3R 19290550 19290576 chr3R 19290626 19290652 7 76 2.0 3.5 2.8 1.8 102 chr3R 19290550 intergenic not near genes chr3R 19290601 intergenic not near genes chr3R 19290652 intergenic not near genes chr3R_7_19290001 chr3R_19290001 RAL-714 1423 chr3R 19340397 19340429 chr3R 19340473 19340506 7 77 1.5 1.0 1.2 3.2 109 chr3R 19340397 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340506 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-714 1424 chr3R 19418408 19418441 chr3R 19418500 19418533 4 92 2.0 1.5 1.8 1.4 125 chr3R 19418408 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418533 intron CG31221 + chr3R_4_19415001 chr3R_19415001 RAL-714 1425 chr3R 19435518 19435544 chr3R 19435794 19435820 10 276 3.0 3.0 3.0 2.5 302 chr3R 19435518 intron CG31221 + chr3R 19435669 intron CG31221 + chr3R 19435820 intron CG31221 + chr3R_10_19435001 chr3R_19435001 RAL-714 1426 chr3R 19453851 19453870 chr3R 19454001 19454020 4 150 1.0 1.0 1.0 2.0 169 chr3R 19453851 intron CG31221 + chr3R 19453936 intron CG31221 + chr3R 19454020 intron CG31221 + chr3R_4_19450001 chr3R_19450001 RAL-714 1427 chr3R 19466165 19466185 chr3R 19468004 19468024 4 1839 13.0 8.0 10.5 0.3 1859 chr3R 19466165 intron Dys + chr3R 19467094 intron Dys + chr3R 19468024 intron Dys + chr3R_4_19465001 chr3R_19465001 RAL-714 1428 chr3R 19502199 19502229 chr3R 19502276 19502306 7 77 1.5 0.0 0.8 3.9 107 chr3R 19502199 intron Dys + chr3R 19502252 intron Dys + chr3R 19502306 intron Dys + chr3R_7_19500001 chr3R_19500001 RAL-714 1429 chr3R 19532215 19532246 chr3R 19532290 19532322 12 76 1.0 2.5 1.8 4.3 107 chr3R 19532215 intron Dys + chr3R 19532268 intron Dys + chr3R 19532322 intron Dys + chr3R_12_19530001 chr3R_19530001 RAL-714 1430 chr3R 19602756 19602777 chr3R 19602834 19602855 4 78 2.5 1.0 1.8 1.4 99 chr3R 19602756 intergenic CG7333 + chr3R 19602806 intergenic CG7333 + chr3R 19602855 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-714 1431 chr3R 19702331 19702352 chr3R 19702410 19702434 4 81 3.0 0.5 1.8 1.4 103 chr3R 19702331 intergenic not near genes chr3R 19702382 intergenic not near genes chr3R 19702434 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-714 1432 chr3R 19716218 19716246 chr3R 19716295 19716323 5 77 0.0 0.0 0.0 5.0 105 chr3R 19716218 intergenic CG34286 - chr3R 19716270 intergenic CG34286 - chr3R 19716323 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-714 1433 chr3R 19824507 19824536 chr3R 19824601 19824630 9 94 2.5 3.5 3.0 2.2 123 chr3R 19824507 intron bnl - chr3R 19824568 intron bnl - chr3R 19824630 intron bnl - chr3R_9_19820001 chr3R_19820001 RAL-714 1434 chr3R 20003033 20003044 chr3R 20003114 20003121 4 80 0.5 0.0 0.2 3.3 88 chr3R 20003033 intron Hs6st - chr3R 20003077 intron Hs6st - chr3R 20003121 intron Hs6st - chr3R_4_20000001 chr3R_20000001 RAL-714 1435 chr3R 20008822 20008851 chr3R 20008902 20008932 9 81 0.5 2.5 1.5 3.6 110 chr3R 20008822 intergenic MED25 +,Hs6st - chr3R 20008877 intergenic MED25 +,Hs6st - chr3R 20008932 intergenic MED25 +,Hs6st - chr3R_9_20005001 chr3R_20005001 RAL-714 1436 chr3R 20060632 20060654 chr3R 20060715 20060737 7 82 3.5 1.5 2.5 2.0 105 chr3R 20060632 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060737 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-714 1437 chr3R 20077037 20077071 chr3R 20077123 20077157 6 86 1.0 2.0 1.5 2.4 120 chr3R 20077037 intergenic not near genes chr3R 20077097 intergenic not near genes chr3R 20077157 intergenic not near genes chr3R_6_20075001 chr3R_20075001 RAL-714 1438 chr3R 20109538 20109566 chr3R 20114744 20114772 copia 8 5206 1.0 1.0 1.0 4.0 5234 chr3R 20109538 intergenic not near genes chr3R 20112155 intergenic not near genes chr3R 20114772 intergenic CG10887 + chr3R_8_20110001 chr3R_20110001 RAL-714 1439 chr3R 20124566 20124597 chr3R 20124653 20124671 6 84 1.5 2.0 1.8 2.1 105 chr3R 20124566 intergenic not near genes chr3R 20124618 intergenic not near genes chr3R 20124671 intergenic not near genes chr3R_6_20120001 chr3R_20120001 RAL-714 1440 chr3R 20137190 20137225 chr3R 20137317 20137347 6 125 1.5 3.5 2.5 1.7 157 chr3R 20137190 intergenic not near genes chr3R 20137268 intergenic not near genes chr3R 20137347 intergenic not near genes chr3R_6_20135001 chr3R_20135001 RAL-714 1441 chr3R 20195691 20195722 chr3R 20195768 20195796 4 76 1.0 1.5 1.2 1.8 105 chr3R 20195691 intergenic not near genes chr3R 20195744 intergenic not near genes chr3R 20195796 intergenic not near genes chr3R_4_20195001 chr3R_20195001 RAL-714 1442 chr3R 20308188 20308202 chr3R 20308276 20308290 5 88 3.5 0.0 1.8 1.8 102 chr3R 20308188 intergenic not near genes chr3R 20308239 intergenic not near genes chr3R 20308290 intergenic not near genes chr3R_5_20305001 chr3R_20305001 RAL-714 1443 chr3R 20312867 20312886 chr3R 20312953 20312971 4 86 2.0 2.0 2.0 1.3 104 chr3R 20312867 intron CG42668 + chr3R 20312919 intron CG42668 + chr3R 20312971 intron CG42668 + chr3R_4_20310001 chr3R_20310001 RAL-714 1444 chr3R 20331013 20331032 chr3R 20331499 20331518 roo 5 486 0.5 2.0 1.2 2.3 505 chr3R 20331013 intergenic Sirt2 + chr3R 20331266 intergenic Sirt2 + chr3R 20331518 intergenic not near genes chr3R_5_20330001 chr3R_20330001 RAL-714 1445 chr3R 20411219 20411246 chr3R 20411434 20411461 10 215 0.5 2.0 1.2 4.5 242 chr3R 20411219 intron Gfrl - chr3R 20411340 intron Gfrl - chr3R 20411461 intron Gfrl - chr3R_10_20410001 chr3R_20410001 RAL-714 1446 chr3R 20499875 20499896 chr3R 20499965 20499986 4 90 2.5 2.5 2.5 1.1 111 chr3R 20499875 intergenic Dic2 - chr3R 20499930 intergenic Dic2 - chr3R 20499986 intergenic Dic2 - chr3R_4_20495001 chr3R_20495001 RAL-714 1447 chr3R 20595603 20595639 chr3R 20595812 20595849 14 210 4.0 3.0 3.5 3.1 246 chr3R 20595603 intron bon + chr3R 20595726 intron bon + chr3R 20595849 intron bon + chr3R_14_20595001 chr3R_20595001 RAL-714 1448 chr3R 20686966 20686987 chr3R 20687401 20687421 5 434 1.0 3.5 2.2 1.6 455 chr3R 20686966 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687421 intergenic not near genes chr3R_5_20685001 chr3R_20685001 RAL-714 1449 chr3R 20703482 20703513 chr3R 20703876 20703907 7 394 2.0 1.5 1.8 2.5 425 chr3R 20703482 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703907 intron Oamb - chr3R_7_20700001 chr3R_20700001 RAL-714 1450 chr3R 20707745 20707756 chr3R 20707960 20707971 4 215 4.5 1.0 2.8 1.1 226 chr3R 20707745 intron Oamb - chr3R 20707858 intron Oamb - chr3R 20707971 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-714 1451 chr3R 20722852 20722872 chr3R 20722979 20722999 6 125 5.5 0.0 2.8 1.6 147 chr3R 20722852 intergenic not near genes chr3R 20722926 intergenic not near genes chr3R 20722999 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-714 1452 chr3R 20735010 20735046 chr3R 20735096 20735105 4 79 1.5 2.0 1.8 1.4 95 chr3R 20735010 intergenic not near genes chr3R 20735058 intergenic not near genes chr3R 20735105 intergenic not near genes chr3R_4_20735001 chr3R_20735001 RAL-714 1453 chr3R 20787440 20787458 chr3R 20787531 20787549 6 91 3.0 0.5 1.8 2.1 109 chr3R 20787440 intron Syp + chr3R 20787494 intron Syp + chr3R 20787549 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-714 1454 chr3R 21014015 21014045 chr3R 21014092 21014123 10 78 2.0 2.0 2.0 3.3 108 chr3R 21014015 3` UTR Calx + chr3R 21014069 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-714 1455 chr3R 21141679 21141701 chr3R 21150160 21150181 Tirant 5 8480 1.5 2.0 1.8 1.8 8502 chr3R 21141679 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150181 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-714 1456 chr3R 21186036 21186055 chr3R 21186136 21186155 8 100 1.5 1.0 1.2 3.6 119 chr3R 21186036 intron SNF4Agamma + chr3R 21186096 intron SNF4Agamma + chr3R 21186155 intron SNF4Agamma + chr3R_8_21185001 chr3R_21185001 RAL-714 1457 chr3R 21239808 21239955 chr3R 21239902 21240031 5 77 0.5 0.0 0.2 4.2 223 chr3R 21239808 intergenic not near genes chr3R 21239920 intergenic not near genes chr3R 21240031 intergenic not near genes chr3R_5_21235001 chr3R_21235001 RAL-714 1458 chr3R 21287654 21287676 chr3R 21288006 21288024 10 352 1.0 4.0 2.5 2.9 370 chr3R 21287654 intron SIFaR - chr3R 21287839 intron SIFaR - chr3R 21288024 intron SIFaR - chr3R_10_21285001 chr3R_21285001 RAL-714 1459 chr3R 21322978 21322996 chr3R 21323056 21323074 4 78 2.5 0.0 1.2 1.8 96 chr3R 21322978 intron CG16791 - chr3R 21323026 intron CG16791 - chr3R 21323074 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-714 1460 chr3R 21330804 21330829 chr3R 21330889 21330919 6 88 2.0 1.5 1.8 2.1 115 chr3R 21330804 intron CG16791 - chr3R 21330862 intron CG16791 - chr3R 21330919 intron CG16791 - chr3R_6_21330001 chr3R_21330001 RAL-714 1461 chr3R 21472016 21472033 chr3R 21472097 21472114 7 81 1.5 1.5 1.5 2.8 98 chr3R 21472016 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-714 1462 chr3R 21494679 21494716 chr3R 21494759 21494796 15 80 2.0 2.0 2.0 5.0 117 chr3R 21494679 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494796 intergenic not near genes chr3R_15_21490001 chr3R_21490001 RAL-714 1463 chr3R 21505225 21505248 chr3R 21505306 21505330 6 82 3.5 3.5 3.5 1.3 105 chr3R 21505225 intron C15 + chr3R 21505278 intron C15 + chr3R 21505330 intron C15 + chr3R_6_21505001 chr3R_21505001 RAL-714 1464 chr3R 21519986 21520129 chr3R 21520087 21520223 6 97 2.0 2.0 2.0 2.0 237 chr3R 21519986 intergenic not near genes chr3R 21520104 intergenic not near genes chr3R 21520223 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-714 1465 chr3R 21613442 21613473 chr3R 21613523 21613553 12 79 2.0 2.0 2.0 4.0 111 chr3R 21613442 intron InR - chr3R 21613498 intron InR - chr3R 21613553 intron InR - chr3R_12_21610001 chr3R_21610001 RAL-714 1466 chr3R 21641256 21641289 chr3R 21641332 21641361 14 75 3.0 1.5 2.2 4.4 105 chr3R 21641256 intron E2f - chr3R 21641308 intron E2f - chr3R 21641361 intron E2f - chr3R_14_21640001 chr3R_21640001 RAL-714 1467 chr3R 21761132 21761155 chr3R 21768523 21768546 mdg1 8 7390 3.5 8.0 5.8 1.2 7414 chr3R 21761132 exon CG42335 + chr3R 21764839 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-714 1468 chr3R 21790958 21790989 chr3R 21791043 21791074 13 85 5.5 2.0 3.8 2.7 116 chr3R 21790958 intron CASK - chr3R 21791016 intron CASK - chr3R 21791074 intron CASK - chr3R_13_21790001 chr3R_21790001 RAL-714 1469 chr3R 21794466 21794485 chr3R 21794554 21794575 5 89 1.5 4.5 3.0 1.2 109 chr3R 21794466 intron CASK - chr3R 21794520 intron CASK - chr3R 21794575 intron CASK - chr3R_5_21790001 chr3R_21790001 RAL-714 1470 chr3R 8339241 8339246 chr3R 21907534 21907534 5 13568289 21.0 22.5 21.8 0.2 13568293 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-714 1471 chr3R 21907534 21907534 chr3R 28831801 28831802 25 6924268 24.0 24.5 24.2 1.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-714 1472 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 21.0 23.0 22.0 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-714 1473 chr3R 21907535 21907535 chr3R 28831801 28831802 52 6924266 24.0 24.5 24.2 2.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_52_25365001 chr3R_25365001 RAL-714 1474 chr3R 21907536 21907536 chr3R 28831801 28831802 38 6924266 24.0 24.5 24.2 1.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-714 1475 chr3R 21952136 21952170 chr3R 21952221 21952255 4 85 1.0 3.0 2.0 1.3 119 chr3R 21952136 intron Eip93F + chr3R 21952196 intron Eip93F + chr3R 21952255 intron Eip93F + chr3R_4_21950001 chr3R_21950001 RAL-714 1476 chr3R 21958607 21958630 chr3R 21958697 21958716 4 89 2.5 1.5 2.0 1.3 109 chr3R 21958607 intron Eip93F + chr3R 21958662 intron Eip93F + chr3R 21958716 intron Eip93F + chr3R_4_21955001 chr3R_21955001 RAL-714 1477 chr3R 22117417 22117447 chr3R 22117493 22117523 4 76 0.5 1.0 0.8 2.2 106 chr3R 22117417 intergenic Ir94b -,Ir94c - chr3R 22117470 intergenic Ir94c -,Ir94b - chr3R 22117523 intergenic Ir94c -,Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-714 1478 chr3R 22234687 22234708 chr3R 22236004 22236027 pogo 4 1318 1.5 2.0 1.8 1.4 1340 chr3R 22234687 intron SKIP + chr3R 22235357 intron SKIP + chr3R 22236027 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-714 1479 chr3R 22239490 22239503 chr3R 22248550 22248563 roo 6 9060 4.5 2.0 3.2 1.4 9073 chr3R 22239490 intron SKIP + chr3R 22244026 intron SKIP + chr3R 22248563 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-714 1480 chr3R 22292478 22292505 chr3R 22292558 22292585 7 80 2.0 3.0 2.5 2.0 107 chr3R 22292478 intron SKIP + chr3R 22292532 intron SKIP + chr3R 22292585 intron SKIP + chr3R_7_22290001 chr3R_22290001 RAL-714 1481 chr3R 22428579 22428609 chr3R 22428654 22428685 9 75 2.5 0.5 1.5 3.6 106 chr3R 22428579 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-714 1482 chr3R 22450542 22450579 chr3R 22453182 22453219 NOF 5 2640 2.5 2.0 2.2 1.6 2677 chr3R 22450542 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-714 1483 chr3R 22492387 22492415 chr3R 22492468 22492496 6 81 0.5 5.0 2.8 1.6 109 chr3R 22492387 intergenic CG7045 + chr3R 22492442 intergenic CG7045 + chr3R 22492496 intergenic CG7045 +,CG7046 + chr3R_6_22490001 chr3R_22490001 RAL-714 1484 chr3R 22538448 22538474 chr3R 22538533 22538559 8 85 2.0 4.0 3.0 2.0 111 chr3R 22538448 intron CG5326 - chr3R 22538504 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_8_22535001 chr3R_22535001 RAL-714 1485 chr3R 22646924 22646943 chr3R 22647012 22647031 4 88 4.0 0.0 2.0 1.3 107 chr3R 22646924 intron wake + chr3R 22646978 intron wake + chr3R 22647031 intron wake + chr3R_4_22645001 chr3R_22645001 RAL-714 1486 chr3R 22769099 22769125 chr3R 22769174 22769202 10 76 1.0 2.5 1.8 3.6 103 chr3R 22769099 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769150 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_10_22765001 chr3R_22765001 RAL-714 1487 chr3R 22797776 22797937 chr3R 22797846 22798033 9 90 0.0 0.0 0.0 9.0 257 chr3R 22797776 intergenic not near genes chr3R 22797904 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-714 1488 chr3R 22860151 22860170 chr3R 22860243 22860262 7 92 2.0 1.0 1.5 2.8 111 chr3R 22860151 intergenic not near genes chr3R 22860206 intergenic not near genes chr3R 22860262 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-714 1489 chr3R 22888195 22888217 chr3R 22888467 22888487 5 272 4.0 0.0 2.0 1.7 292 chr3R 22888195 intergenic not near genes chr3R 22888341 intergenic not near genes chr3R 22888487 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-714 1490 chr3R 22919159 22919190 chr3R 22919256 22919287 11 97 2.5 2.5 2.5 3.1 128 chr3R 22919159 intron klg + chr3R 22919223 intron klg + chr3R 22919287 intron klg + chr3R_11_22915001 chr3R_22915001 RAL-714 1491 chr3R 22927887 22927905 chr3R 22927962 22927999 11 92 3.5 5.5 4.5 2.0 112 chr3R 22927887 intron klg + chr3R 22927943 intron klg + chr3R 22927999 intron klg + chr3R_11_22925001 chr3R_22925001 RAL-714 1492 chr3R 22990349 22990384 chr3R 22990604 22990638 18 254 2.0 4.0 3.0 4.5 289 chr3R 22990349 intron,exon Nha2 -,Or94b + chr3R 22990494 intron,intron Nha2 -,Or94b + chr3R 22990638 intron Nha2 - chr3R_18_22990001 chr3R_22990001 RAL-714 1493 chr3R 23016200 23016229 chr3R 23016275 23016306 10 75 3.0 2.0 2.5 2.9 106 chr3R 23016200 intergenic not near genes chr3R 23016253 intergenic not near genes chr3R 23016306 intergenic not near genes chr3R_10_23015001 chr3R_23015001 RAL-714 1494 chr3R 23090412 23090431 chr3R 23090495 23090512 5 82 4.5 4.5 4.5 0.9 100 chr3R 23090412 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090512 intron CG13830 - chr3R_5_23090001 chr3R_23090001 RAL-714 1495 chr3R 23182688 23182700 chr3R 23182771 23182783 5 83 1.0 0.5 0.8 2.8 95 chr3R 23182688 intron Irk1 + chr3R 23182736 intron Irk1 + chr3R 23182783 intron Irk1 + chr3R_5_23180001 chr3R_23180001 RAL-714 1496 chr3R 23277352 23277365 chr3R 23277439 23277455 8 89 1.0 2.0 1.5 3.2 103 chr3R 23277352 intron orb - chr3R 23277404 intron orb - chr3R 23277455 intron orb - chr3R_8_23275001 chr3R_23275001 RAL-714 1497 chr3R 23303632 23303655 chr3R 23303709 23303733 4 78 2.0 1.5 1.8 1.4 101 chr3R 23303632 intron pnt - chr3R 23303682 intron pnt - chr3R 23303733 intron pnt - chr3R_4_23300001 chr3R_23300001 RAL-714 1498 chr3R 23311685 23311709 chr3R 23311779 23311803 4 94 1.0 2.0 1.5 1.6 118 chr3R 23311685 intron pnt - chr3R 23311744 intron pnt - chr3R 23311803 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-714 1499 chr3R 23338895 23338918 chr3R 23338970 23338993 5 73 3.5 2.0 2.8 1.3 98 chr3R 23338895 intron pnt - chr3R 23338944 intron pnt - chr3R 23338993 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-714 1500 chr3R 23342635 23342662 chr3R 23342770 23342797 6 132 4.5 3.0 3.8 1.2 162 chr3R 23342635 intron pnt - chr3R 23342716 intron pnt - chr3R 23342797 intron pnt - chr3R_6_23340001 chr3R_23340001 RAL-714 1501 chr3R 23533532 23533544 chr3R 23533624 23533636 6 91 4.5 10.0 7.2 0.7 104 chr3R 23533532 exon CG10170 - chr3R 23533584 exon CG10170 - chr3R 23533636 exon CG10170 - chr3R_6_23530001 chr3R_23530001 RAL-714 1502 chr3R 23557874 23557892 chr3R 23557951 23557970 4 78 3.5 3.5 3.5 0.9 96 chr3R 23557874 intron beat-IV + chr3R 23557922 intron beat-IV + chr3R 23557970 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-714 1503 chr3R 23572756 23572781 chr3R 23572872 23572901 10 117 1.0 4.0 2.5 2.9 145 chr3R 23572756 intron beat-IV + chr3R 23572828 intron beat-IV + chr3R 23572901 intron beat-IV + chr3R_10_23570001 chr3R_23570001 RAL-714 1504 chr3R 23608587 23608606 chr3R 23608699 23608734 7 122 6.0 1.5 3.8 1.5 147 chr3R 23608587 intron CG31145 - chr3R 23608660 intron CG31145 - chr3R 23608734 exon CG31145 - chr3R_7_23605001 chr3R_23605001 RAL-714 1505 chr3R 23684706 23684714 chr3R 23685192 23685199 roo 4 486 7.5 9.5 8.5 0.4 493 chr3R 23684706 intron CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685199 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-714 1506 chr3R 23688478 23688482 chr3R 23688569 23688573 4 91 5.5 5.0 5.2 0.6 95 chr3R 23688478 intergenic SPE + chr3R 23688526 intergenic SPE +,CG10254 - chr3R 23688573 intergenic SPE +,CG10254 - chr3R_4_23685001 chr3R_23685001 RAL-714 1507 chr3R 23688485 23688500 chr3R 23688564 23688591 6 89 2.0 5.0 3.5 1.3 106 chr3R 23688485 intergenic SPE + chr3R 23688538 intergenic SPE +,CG10254 - chr3R 23688591 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-714 1508 chr3R 23714719 23714741 chr3R 23714813 23714835 6 94 1.5 2.0 1.8 2.1 116 chr3R 23714719 intron nau - chr3R 23714777 intron nau - chr3R 23714835 intron nau - chr3R_6_23710001 chr3R_23710001 RAL-714 1509 chr3R 23820640 23820664 chr3R 23820724 23820747 5 82 1.5 2.0 1.8 1.8 107 chr3R 23820640 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820747 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-714 1510 chr3R 23835418 23835435 chr3R 23844568 23844585 roo 4 9150 2.5 4.5 3.5 0.9 9167 chr3R 23835418 intron CG34355 + chr3R 23840002 intron CG34355 + chr3R 23844585 intron CG34355 + chr3R_4_23840001 chr3R_23840001 RAL-714 1511 chr3R 23944910 23944933 chr3R 23944995 23945018 11 85 2.5 8.0 5.2 1.8 108 chr3R 23944910 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-714 1512 chr3R 24072090 24072099 chr3R 24072525 24072536 jockey 6 437 7.0 6.5 6.8 0.8 446 chr3R 24072090 intron 4EHP - chr3R 24072313 intron 4EHP - chr3R 24072536 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-714 1513 chr3R 24076915 24076946 chr3R 24078381 24078413 hobo 10 1466 4.5 2.5 3.5 2.2 1498 chr3R 24076915 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-714 1514 chr3R 24080609 24080639 chr3R 24080708 24080738 10 99 2.0 1.0 1.5 4.0 129 chr3R 24080609 intron 4EHP - chr3R 24080674 intron 4EHP - chr3R 24080738 intron 4EHP - chr3R_10_24080001 chr3R_24080001 RAL-714 1515 chr3R 24100460 24100609 chr3R 24100555 24100833 5 172 1.0 1.0 1.0 2.5 373 chr3R 24100460 intron 4EHP - chr3R 24100646 intron 4EHP - chr3R 24100833 intron 4EHP - chr3R_5_24100001 chr3R_24100001 RAL-714 1516 chr3R 24207216 24207245 chr3R 24212291 24212321 flea 12 5076 2.0 3.0 2.5 3.4 5105 chr3R 24207216 intron twin - chr3R 24209768 intron twin - chr3R 24212321 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-714 1517 chr3R 24433477 24433497 chr3R 24433556 24433576 7 79 1.5 4.5 3.0 1.8 99 chr3R 24433477 intron nAChRalpha1 - chr3R 24433526 intron nAChRalpha1 - chr3R 24433576 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-714 1518 chr3R 24493285 24493309 chr3R 24493511 24493538 BS 9 228 1.5 2.5 2.0 3.0 253 chr3R 24493285 intergenic not near genes chr3R 24493412 intergenic not near genes chr3R 24493538 intergenic not near genes chr3R_9_24490001 chr3R_24490001 RAL-714 1519 chr3R 24624378 24624392 chr3R 24624467 24624479 8 89 5.5 4.5 5.0 1.3 101 chr3R 24624378 intron Syx18 - chr3R 24624428 intron Syx18 - chr3R 24624479 exon Syx18 - chr3R_8_24620001 chr3R_24620001 RAL-714 1520 chr3R 24667612 24667632 chr3R 24667689 24667709 4 77 0.5 0.0 0.2 3.3 97 chr3R 24667612 intron slo + chr3R 24667660 intron slo + chr3R 24667709 intron slo + chr3R_4_24665001 chr3R_24665001 RAL-714 1521 chr3R 24670161 24670172 chr3R 24670245 24670256 5 84 3.5 0.0 1.8 1.8 95 chr3R 24670161 intron slo + chr3R 24670208 intron slo + chr3R 24670256 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-714 1522 chr3R 24671222 24671243 chr3R 24671299 24671306 4 74 2.0 2.5 2.2 1.2 84 chr3R 24671222 intron slo + chr3R 24671264 intron slo + chr3R 24671306 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-714 1523 chr3R 24728341 24728357 chr3R 24728514 24728530 6 173 3.0 3.5 3.2 1.4 189 chr3R 24728341 intron tok + chr3R 24728436 intron tok + chr3R 24728530 intron tok + chr3R_6_24725001 chr3R_24725001 RAL-714 1524 chr3R 24730092 24730119 chr3R 24732470 24732497 Doc 11 2376 1.5 1.0 1.2 5.0 2405 chr3R 24730092 intron tok + chr3R 24731294 intron tok + chr3R 24732497 intron tok + chr3R_11_24730001 chr3R_24730001 RAL-714 1525 chr3R 24789982 24790005 chr3R 24790127 24790150 8 145 4.0 2.5 3.2 1.9 168 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790066 intron,5` UTR Ets96B +,CG13634 - chr3R 24790150 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-714 1526 chr3R 24927125 24927157 chr3R 24931916 24931948 Doc 5 4791 3.0 2.0 2.5 1.4 4823 chr3R 24927125 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931948 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-714 1527 chr3R 25004904 25004921 chr3R 25004987 25005004 6 83 0.0 5.0 2.5 1.7 100 chr3R 25004904 intron tnc + chr3R 25004954 intron tnc + chr3R 25005004 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-714 1528 chr3R 25088781 25088808 chr3R 25088863 25088893 5 83 1.5 2.5 2.0 1.7 112 chr3R 25088781 intergenic not near genes chr3R 25088837 intergenic not near genes chr3R 25088893 intergenic not near genes chr3R_5_25085001 chr3R_25085001 RAL-714 1529 chr3R 25209597 25209622 chr3R 25209679 25209704 7 82 2.5 1.0 1.8 2.5 107 chr3R 25209597 intron CG13654 + chr3R 25209650 intron CG13654 + chr3R 25209704 intron CG13654 + chr3R_7_25205001 chr3R_25205001 RAL-714 1530 chr3R 25267858 25267878 chr3R 25267957 25267983 4 104 0.0 0.0 0.0 4.0 125 chr3R 25267858 intron CR45214 - chr3R 25267920 intron CR45214 - chr3R 25267983 3` UTR CR45214 - chr3R_4_25265001 chr3R_25265001 RAL-714 1531 chr3R 25362201 25362222 chr3R 25362397 25362413 4 195 3.0 3.0 3.0 1.0 212 chr3R 25362201 intron Fur1 - chr3R 25362307 intron Fur1 - chr3R 25362413 intron Fur1 - chr3R_4_25360001 chr3R_25360001 RAL-714 1532 chr3R 25368473 25368502 chr3R 25368591 25368620 7 118 2.5 0.0 1.2 3.2 147 chr3R 25368473 intron Fur1 - chr3R 25368546 intron Fur1 - chr3R 25368620 intron Fur1 - chr3R_7_25365001 chr3R_25365001 RAL-714 1533 chr3R 25377088 25377125 chr3R 25377354 25377391 20 265 2.0 4.0 3.0 5.0 303 chr3R 25377088 intron Fur1 - chr3R 25377240 intron Fur1 - chr3R 25377391 intron Fur1 - chr3R_20_25375001 chr3R_25375001 RAL-714 1534 chr3R 25386826 25386856 chr3R 25386913 25386949 10 92 1.5 2.5 2.0 3.3 123 chr3R 25386826 intron Fur1 - chr3R 25386888 intron Fur1 - chr3R 25386949 intron Fur1 - chr3R_10_25385001 chr3R_25385001 RAL-714 1535 chr3R 25422061 25422094 chr3R 25422142 25422175 5 81 1.0 0.0 0.5 3.3 114 chr3R 25422061 intron Fur1 - chr3R 25422118 intron Fur1 - chr3R 25422175 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-714 1536 chr3R 25548483 25548503 chr3R 25548583 25548603 8 100 3.0 1.0 2.0 2.7 120 chr3R 25548483 intron msi + chr3R 25548543 intron msi + chr3R 25548603 intron msi + chr3R_8_25545001 chr3R_25545001 RAL-714 1537 chr3R 25570045 25570078 chr3R 25570135 25570135 5 83 1.5 1.0 1.2 2.3 90 chr3R 25570045 intron msi + chr3R 25570090 intron msi + chr3R 25570135 intron msi + chr3R_5_25570001 chr3R_25570001 RAL-714 1538 chr3R 25642594 25642623 chr3R 25642685 25642714 7 91 2.0 2.5 2.2 2.2 120 chr3R 25642594 intron jigr1 + chr3R 25642654 intron jigr1 + chr3R 25642714 intron jigr1 + chr3R_7_25640001 chr3R_25640001 RAL-714 1539 chr3R 25652325 25652340 chr3R 25652401 25652417 4 77 3.0 4.0 3.5 0.9 92 chr3R 25652325 intergenic not near genes chr3R 25652371 intergenic not near genes chr3R 25652417 intergenic not near genes chr3R_4_25650001 chr3R_25650001 RAL-714 1540 chr3R 25669063 25669094 chr3R 25669157 25669186 10 94 1.5 2.5 2.0 3.3 123 chr3R 25669063 intron Lgr3 + chr3R 25669124 intron Lgr3 + chr3R 25669186 intron Lgr3 + chr3R_10_25665001 chr3R_25665001 RAL-714 1541 chr3R 25689127 25689163 chr3R 25689235 25689271 8 108 1.5 2.5 2.0 2.7 144 chr3R 25689127 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-714 1542 chr3R 25725846 25725862 chr3R 25735006 25735022 roo 4 9160 1.0 4.5 2.8 1.1 9176 chr3R 25725846 intron LpR2 - chr3R 25730434 intron LpR2 - chr3R 25735022 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-714 1543 chr3R 25765880 25765912 chr3R 25765959 25765991 10 79 4.5 4.5 4.5 1.8 111 chr3R 25765880 intergenic not near genes chr3R 25765936 intergenic not near genes chr3R 25765991 intergenic not near genes chr3R_10_25765001 chr3R_25765001 RAL-714 1544 chr3R 25801274 25801285 chr3R 25802258 25802268 7 984 1.5 3.5 2.5 2.0 994 chr3R 25801274 intergenic not near genes chr3R 25801771 intergenic not near genes chr3R 25802268 intergenic not near genes chr3R_7_25800001 chr3R_25800001 RAL-714 1545 chr3R 25832692 25832719 chr3R 25841874 25841901 roo 7 9181 4.0 3.5 3.8 1.5 9209 chr3R 25832692 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-714 1546 chr3R 25843639 25843655 chr3R 25843769 25843785 6 130 1.0 1.5 1.2 2.7 146 chr3R 25843639 intergenic CR45653 + chr3R 25843712 intergenic CR45653 + chr3R 25843785 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-714 1547 chr3R 26093845 26093873 chr3R 26093922 26093951 9 78 2.0 3.5 2.8 2.4 106 chr3R 26093845 intron dys - chr3R 26093898 intron dys - chr3R 26093951 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-714 1548 chr3R 26104063 26104096 chr3R 26105143 26105175 4 1080 15.0 12.0 13.5 0.3 1112 chr3R 26104063 intergenic not near genes chr3R 26104619 intergenic not near genes chr3R 26105175 intergenic not near genes chr3R_4_26100001 chr3R_26100001 RAL-714 1549 chr3R 26108825 26108836 chr3R 26117407 26117418 Tirant 4 8582 2.5 0.5 1.5 1.6 8593 chr3R 26108825 5` UTR CG31324 + chr3R 26113122 intron CG31324 + chr3R 26117418 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-714 1550 chr3R 26121953 26121976 chr3R 26122048 26122073 6 96 0.0 4.0 2.0 2.0 120 chr3R 26121953 intron CG31324 + chr3R 26122013 intron CG31324 + chr3R 26122073 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-714 1551 chr3R 26122464 26122477 chr3R 26122540 26122545 5 74 3.0 5.0 4.0 1.0 81 chr3R 26122464 intron CG31324 + chr3R 26122504 intron CG31324 + chr3R 26122545 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-714 1552 chr3R 26126272 26126289 chr3R 26126377 26126394 6 104 5.0 2.0 3.5 1.3 122 chr3R 26126272 intron CG31324 + chr3R 26126333 intron CG31324 + chr3R 26126394 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-714 1553 chr3R 26166174 26166196 chr3R 26166260 26166282 6 86 3.0 1.0 2.0 2.0 108 chr3R 26166174 intergenic not near genes chr3R 26166228 intergenic not near genes chr3R 26166282 intergenic not near genes chr3R_6_26165001 chr3R_26165001 RAL-714 1554 chr3R 26265821 26265842 chr3R 26265908 26265930 9 86 0.0 3.0 1.5 3.6 109 chr3R 26265821 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265930 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-714 1555 chr3R 26294715 26294746 chr3R 26294793 26294824 11 78 1.5 2.5 2.0 3.7 109 chr3R 26294715 intergenic not near genes chr3R 26294770 intergenic not near genes chr3R 26294824 intergenic not near genes chr3R_11_26290001 chr3R_26290001 RAL-714 1556 chr3R 26343044 26343050 chr3R 26343560 26343566 4 516 1.0 5.0 3.0 1.0 522 chr3R 26343044 intron CG33970 + chr3R 26343305 intron CG33970 + chr3R 26343566 intron CG33970 + chr3R_4_26340001 chr3R_26340001 RAL-714 1557 chr3R 26376326 26376355 chr3R 26385486 26385515 roo 9 9160 2.0 0.0 1.0 4.5 9189 chr3R 26376326 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385515 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-714 1558 chr3R 26425875 26425907 chr3R 26425959 26425991 10 83 2.0 4.0 3.0 2.5 116 chr3R 26425875 intron CR31084 + chr3R 26425933 intron CR31084 + chr3R 26425991 intron CR31084 + chr3R_10_26425001 chr3R_26425001 RAL-714 1559 chr3R 26553208 26553224 chr3R 26553712 26553728 4 504 2.5 1.5 2.0 1.3 520 chr3R 26553208 intron scrib + chr3R 26553468 intron scrib + chr3R 26553728 intron scrib + chr3R_4_26550001 chr3R_26550001 RAL-714 1560 chr3R 26558326 26558358 chr3R 26565638 26565670 Stalker4 16 7311 1.5 4.0 2.8 4.2 7344 chr3R 26558326 intron scrib + chr3R 26561998 intron scrib + chr3R 26565670 intron scrib + chr3R_16_26560001 chr3R_26560001 RAL-714 1561 chr3R 26607742 26607774 chr3R 26607818 26607850 10 76 2.0 2.5 2.2 3.1 108 chr3R 26607742 5` UTR CR44951 + chr3R 26607796 5` UTR CR44951 + chr3R 26607850 5` UTR CR44951 + chr3R_10_26605001 chr3R_26605001 RAL-714 1562 chr3R 26641639 26641656 chr3R 26641725 26641742 5 86 3.0 3.5 3.2 1.2 103 chr3R 26641639 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641742 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-714 1563 chr3R 26642729 26642758 chr3R 26643122 26643152 jockey 6 394 3.0 0.5 1.8 2.1 423 chr3R 26642729 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-714 1564 chr3R 26660645 26660677 chr3R 26660729 26660761 11 83 3.5 9.0 6.2 1.5 116 chr3R 26660645 intron beat-VII - chr3R 26660703 intron beat-VII - chr3R 26660761 intron beat-VII - chr3R_11_26660001 chr3R_26660001 RAL-714 1565 chr3R 26710834 26710857 chr3R 26710917 26710941 10 84 3.0 4.0 3.5 2.2 107 chr3R 26710834 intron amon - chr3R 26710888 intron amon - chr3R 26710941 intron amon - chr3R_10_26710001 chr3R_26710001 RAL-714 1566 chr3R 26770246 26770272 chr3R 26770321 26770349 6 77 2.0 2.0 2.0 2.0 103 chr3R 26770246 intergenic CR45563 + chr3R 26770298 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-714 1567 chr3R 26854794 26854810 chr3R 26855287 26855317 6 504 2.5 3.0 2.8 1.6 523 chr3R 26854794 intron Lerp - chr3R 26855056 intron Lerp - chr3R 26855317 intron Lerp - chr3R_6_26855001 chr3R_26855001 RAL-714 1568 chr3R 26857878 26857904 chr3R 26857966 26857992 5 88 2.0 2.5 2.2 1.6 114 chr3R 26857878 intron Lerp - chr3R 26857935 intron Lerp - chr3R 26857992 intron Lerp - chr3R_5_26855001 chr3R_26855001 RAL-714 1569 chr3R 27140514 27140546 chr3R 27148124 27148156 412 6 7610 4.0 2.5 3.2 1.4 7642 chr3R 27140514 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-714 1570 chr3R 27241400 27241426 chr3R 27244700 27244727 12 3300 28.0 25.0 26.5 0.4 3327 chr3R 27241400 exon CG17991 + chr3R 27243064 exon CG18766 - chr3R 27244727 intron CG18766 - chr3R_12_27240001 chr3R_27240001 RAL-714 1571 chr3R 27245602 27245612 chr3R 27245680 27245702 5 84 5.0 0.0 2.5 1.4 100 chr3R 27245602 intergenic CG18766 - chr3R 27245652 intergenic CG18766 - chr3R 27245702 intergenic CG18766 - chr3R_5_27245001 chr3R_27245001 RAL-714 1572 chr3R 27300866 27300875 chr3R 27300958 27300965 6 92 1.0 1.5 1.2 2.7 99 chr3R 27300866 intron CG3339 - chr3R 27300916 intron CG3339 - chr3R 27300965 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-714 1573 chr3R 27315998 27316011 chr3R 27316068 27316086 8 75 5.0 2.5 3.8 1.7 88 chr3R 27315998 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316086 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-714 1574 chr3R 27329477 27329500 chr3R 27329553 27329577 5 77 1.0 0.5 0.8 2.8 100 chr3R 27329477 intergenic CG3330 - chr3R 27329527 intergenic CG3330 - chr3R 27329577 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-714 1575 chr3R 27342793 27342825 chr3R 27351374 27351406 Tirant 11 8581 1.5 1.0 1.2 5.0 8613 chr3R 27342793 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-714 1576 chr3R 27393678 27393703 chr3R 27393960 27393985 6 282 3.5 1.5 2.5 1.7 307 chr3R 27393678 intron side - chr3R 27393832 intron side - chr3R 27393985 intron side - chr3R_6_27390001 chr3R_27390001 RAL-714 1577 chr3R 27399574 27399596 chr3R 27399651 27399674 5 77 4.5 6.5 5.5 0.8 100 chr3R 27399574 intron side - chr3R 27399624 intron side - chr3R 27399674 intron side - chr3R_5_27395001 chr3R_27395001 RAL-714 1578 chr3R 27457872 27457894 chr3R 27457960 27457986 4 91 0.5 0.0 0.2 3.3 114 chr3R 27457872 intergenic not near genes chr3R 27457929 intergenic not near genes chr3R 27457986 intergenic not near genes chr3R_4_27455001 chr3R_27455001 RAL-714 1579 chr3R 27496595 27496602 chr3R 27496700 27496707 4 105 5.0 1.0 3.0 1.0 112 chr3R 27496595 intergenic not near genes chr3R 27496651 intergenic not near genes chr3R 27496707 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-714 1580 chr3R 27595060 27595087 chr3R 27595143 27595170 10 83 0.0 1.0 0.5 6.7 110 chr3R 27595060 intron CG5639 - chr3R 27595115 intron CG5639 - chr3R 27595170 intron CG5639 - chr3R_10_27595001 chr3R_27595001 RAL-714 1581 chr3R 27619701 27619731 chr3R 27619816 27619845 10 111 3.5 4.5 4.0 2.0 144 chr3R 27619701 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619845 intron Tusp + chr3R_10_27615001 chr3R_27615001 RAL-714 1582 chr3R 27622231 27622260 chr3R 27622326 27622355 6 95 1.5 1.5 1.5 2.4 124 chr3R 27622231 intron Tusp + chr3R 27622293 intron Tusp + chr3R 27622355 intron Tusp + chr3R_6_27620001 chr3R_27620001 RAL-714 1583 chr3R 27627095 27627119 chr3R 27627195 27627221 15 101 3.0 4.0 3.5 3.3 126 chr3R 27627095 intron Tusp + chr3R 27627158 intron Tusp + chr3R 27627221 intron Tusp + chr3R_15_27625001 chr3R_27625001 RAL-714 1584 chr3R 27706775 27706805 chr3R 27706851 27706882 5 75 2.5 0.5 1.5 2.0 107 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706882 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-714 1585 chr3R 27725566 27725588 chr3R 27731008 27731030 I-element 7 5442 4.0 3.5 3.8 1.5 5464 chr3R 27725566 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731030 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-714 1586 chr3R 27799936 27799961 chr3R 27800018 27800043 4 82 1.5 3.5 2.5 1.1 107 chr3R 27799936 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-714 1587 chr3R 27856765 27856785 chr3R 27858245 27858268 hopper2 4 1482 5.5 1.5 3.5 0.9 1503 chr3R 27856765 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858268 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-714 1588 chr3R 27862955 27862987 chr3R 27868258 27868284 Transpac 8 5304 2.5 4.0 3.2 1.9 5329 chr3R 27862955 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-714 1589 chr3R 27875702 27875733 chr3R 27882757 27882788 297 8 7055 2.5 3.0 2.8 2.1 7086 chr3R 27875702 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-714 1590 chr3R 27900331 27900355 chr3R 27900413 27900437 8 82 2.0 1.0 1.5 3.2 106 chr3R 27900331 intron CG34353 - chr3R 27900384 intron CG34353 - chr3R 27900437 intron CG34353 - chr3R_8_27900001 chr3R_27900001 RAL-714 1591 chr3R 28005769 28005787 chr3R 28005851 28005868 6 82 2.0 3.0 2.5 1.7 99 chr3R 28005769 intergenic not near genes chr3R 28005818 intergenic not near genes chr3R 28005868 intergenic not near genes chr3R_6_28005001 chr3R_28005001 RAL-714 1592 chr3R 28035488 28035506 chr3R 28035565 28035583 7 77 2.0 1.5 1.8 2.5 95 chr3R 28035488 intron CG34362 + chr3R 28035536 intron CG34362 + chr3R 28035583 intron CG34362 + chr3R_7_28035001 chr3R_28035001 RAL-714 1593 chr3R 28068492 28068529 chr3R 28073934 28073970 I-element 8 5440 2.5 0.0 1.2 3.6 5478 chr3R 28068492 intron CG34362 + chr3R 28071231 intron CG34362 + chr3R 28073970 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-714 1594 chr3R 28102572 28102600 chr3R 28102810 28102838 12 237 0.5 3.0 1.8 4.3 266 chr3R 28102572 intergenic not near genes chr3R 28102705 intergenic not near genes chr3R 28102838 intergenic not near genes chr3R_12_28100001 chr3R_28100001 RAL-714 1595 chr3R 28103322 28103352 chr3R 28103415 28103443 9 89 4.0 3.0 3.5 2.0 121 chr3R 28103322 intergenic not near genes chr3R 28103382 intergenic not near genes chr3R 28103443 intergenic not near genes chr3R_9_28100001 chr3R_28100001 RAL-714 1596 chr3R 28118572 28118864 chr3R 28118702 28118945 10 116 6.5 3.0 4.8 1.7 373 chr3R 28118572 intergenic not near genes chr3R 28118758 intergenic not near genes chr3R 28118945 intergenic not near genes chr3R_10_28115001 chr3R_28115001 RAL-714 1597 chr3R 28118872 28118881 chr3R 28118952 28118962 4 81 3.0 4.0 3.5 0.9 90 chr3R 28118872 intergenic not near genes chr3R 28118917 intergenic not near genes chr3R 28118962 intergenic not near genes chr3R_4_28115001 chr3R_28115001 RAL-714 1598 chr3R 28130072 28130101 chr3R 28130186 28130214 6 114 0.0 0.5 0.2 5.0 142 chr3R 28130072 intergenic not near genes chr3R 28130143 intergenic not near genes chr3R 28130214 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-714 1599 chr3R 28169842 28169876 chr3R 28170028 28170062 12 185 1.5 2.0 1.8 4.3 220 chr3R 28169842 intron CG34354 + chr3R 28169952 intron CG34354 + chr3R 28170062 intron CG34354 + chr3R_12_28165001 chr3R_28165001 RAL-714 1600 chr3R 28201829 28201843 chr3R 28201925 28201942 5 98 3.0 2.0 2.5 1.4 113 chr3R 28201829 intron CG34354 + chr3R 28201886 intron CG34354 + chr3R 28201942 intron CG34354 + chr3R_5_28200001 chr3R_28200001 RAL-714 1601 chr3R 28223913 28223940 chr3R 28224369 28224396 9 456 1.0 3.5 2.2 2.8 483 chr3R 28223913 intron CG34354 + chr3R 28224154 intron CG34354 + chr3R 28224396 intron CG34354 + chr3R_9_28220001 chr3R_28220001 RAL-714 1602 chr3R 28253338 28253373 chr3R 28255848 28255883 jockey 8 2507 6.5 3.5 5.0 1.3 2545 chr3R 28253338 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-714 1603 chr3R 28276677 28276703 chr3R 28276764 28276789 9 86 2.0 2.0 2.0 3.0 112 chr3R 28276677 intergenic not near genes chr3R 28276733 intergenic not near genes chr3R 28276789 intergenic not near genes chr3R_9_28275001 chr3R_28275001 RAL-714 1604 chr3R 28282989 28283018 chr3R 28283618 28283647 11 629 4.5 4.5 4.5 2.0 658 chr3R 28282989 exon CG34436 + chr3R 28283318 exon CG34436 + chr3R 28283647 intergenic CG34437 +,CG34436 + chr3R_11_28280001 chr3R_28280001 RAL-714 1605 chr3R 28302102 28302135 chr3R 28302541 28302574 jockey 13 439 3.5 3.0 3.2 3.1 472 chr3R 28302102 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_13_28300001 chr3R_28300001 RAL-714 1606 chr3R 28331519 28331528 chr3R 28331597 28331607 5 79 2.5 1.5 2.0 1.7 88 chr3R 28331519 intron larp - chr3R 28331563 intron larp - chr3R 28331607 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-714 1607 chr3R 28345648 28345666 chr3R 28345724 28345742 5 76 1.5 0.0 0.8 2.8 94 chr3R 28345648 intergenic Moca-cyp + chr3R 28345695 intergenic not near genes chr3R 28345742 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-714 1608 chr3R 28382156 28382171 chr3R 28382239 28382254 4 83 3.0 6.0 4.5 0.7 98 chr3R 28382156 intergenic not near genes chr3R 28382205 intergenic not near genes chr3R 28382254 intergenic not near genes chr3R_4_28380001 chr3R_28380001 RAL-714 1609 chr3R 28425193 28425217 chr3R 28425271 28425296 10 77 1.5 3.0 2.2 3.1 103 chr3R 28425193 intron beat-VI + chr3R 28425244 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_10_28425001 chr3R_28425001 RAL-714 1610 chr3R 28626230 28626253 chr3R 28626328 28626351 8 95 1.5 3.0 2.2 2.5 121 chr3R 28626230 intron CG10011 - chr3R 28626290 intron CG10011 - chr3R 28626351 intron CG10011 - chr3R_8_28625001 chr3R_28625001 RAL-714 1611 chr3R 28745606 28745620 chr3R 28745684 28745706 4 83 1.5 2.5 2.0 1.3 100 chr3R 28745606 intergenic not near genes chr3R 28745656 intergenic not near genes chr3R 28745706 intergenic not near genes chr3R_4_28745001 chr3R_28745001 RAL-714 1612 chr3R 28792872 28792904 chr3R 28797967 28797999 jockey 12 5093 2.5 4.0 3.2 2.9 5127 chr3R 28792872 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797999 intergenic not near genes chr3R_12_28795001 chr3R_28795001 RAL-714 1613 chr3R 28827690 28827705 chr3R 28827846 28827857 4 155 2.5 4.0 3.2 1.0 167 chr3R 28827690 intron WASp - chr3R 28827774 intron WASp - chr3R 28827857 intron WASp - chr3R_4_28825001 chr3R_28825001 RAL-714 1614 chr3R 21907534 21907536 chr3R 28831799 28831802 73 6924266 24.0 24.5 24.2 2.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_73_25365001 chr3R_25365001 RAL-714 1615 chr3R 28960509 28960542 chr3R 28960594 28960627 9 85 1.5 2.0 1.8 3.2 118 chr3R 28960509 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960627 intron CG14521 - chr3R_9_28960001 chr3R_28960001 RAL-714 1616 chr3R 28971160 28971165 chr3R 28971241 28971246 4 81 3.0 0.5 1.8 1.4 86 chr3R 28971160 5` UTR CR45669 + chr3R 28971203 5` UTR CR45669 + chr3R 28971246 5` UTR CR45669 + chr3R_4_28970001 chr3R_28970001 RAL-714 1617 chr3R 29009961 29009984 chr3R 29010067 29010090 10 106 1.0 1.5 1.2 4.5 129 chr3R 29009961 intron wat - chr3R 29010026 intron wat - chr3R 29010090 intron wat - chr3R_10_29010001 chr3R_29010001 RAL-714 1618 chr3R 21907534 21907535 chr3R 29013340 29013340 7 7105806 24.0 14.0 19.0 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-714 1619 chr3R 29017134 29017148 chr3R 29017228 29017242 6 94 0.5 3.5 2.0 2.0 108 chr3R 29017134 intron wat - chr3R 29017188 intron wat - chr3R 29017242 intron wat - chr3R_6_29015001 chr3R_29015001 RAL-714 1620 chr3R 29070054 29070079 chr3R 29070135 29070159 8 81 1.0 3.5 2.2 2.5 105 chr3R 29070054 intron CG11873 + chr3R 29070106 intron CG11873 + chr3R 29070159 intron CG11873 + chr3R_8_29070001 chr3R_29070001 RAL-714 1621 chr3R 29079397 29079410 chr3R 29080767 29080782 NOF 4 1372 1.0 3.0 2.0 1.3 1385 chr3R 29079397 intron CG11873 + chr3R 29080090 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-714 1622 chr3R 29213064 29213090 chr3R 29213147 29213173 10 83 4.0 3.5 3.8 2.1 109 chr3R 29213064 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213173 intergenic not near genes chr3R_10_29210001 chr3R_29210001 RAL-714 1623 chr3R 29236809 29236984 chr3R 29247120 29247253 5 10297 19.5 24.5 22.0 0.2 10444 chr3R 29236809 exon CG11951 - chr3R 29242031 exon CG31445 - chr3R 29247253 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-714 1624 chr3R 29237247 29237283 chr3R 29239268 29239299 10 2020 10.5 5.0 7.8 1.1 2052 chr3R 29237247 exon CG11951 - chr3R 29238273 intron CG11951 - chr3R 29239299 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-714 1625 chr3R 29257576 29257582 chr3R 29257829 29257835 4 253 0.5 0.0 0.2 3.3 259 chr3R 29257576 intergenic CG45544 + chr3R 29257706 intergenic CG45544 + chr3R 29257835 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-714 1626 chr3R 29264189 29264211 chr3R 29264291 29264313 5 101 0.0 0.0 0.0 5.0 124 chr3R 29264189 intergenic not near genes chr3R 29264251 intergenic not near genes chr3R 29264313 intergenic not near genes chr3R_5_29260001 chr3R_29260001 RAL-714 1627 chr3R 29319824 29319857 chr3R 29320143 29320176 jockey 7 318 1.0 3.5 2.2 2.2 352 chr3R 29319824 intergenic Cnx99A - chr3R 29320000 intergenic Cnx99A - chr3R 29320176 intergenic not near genes chr3R_7_29320001 chr3R_29320001 RAL-714 1628 chr3R 29329173 29329194 chr3R 29329516 29329537 5 343 2.0 1.5 1.8 1.8 364 chr3R 29329173 intergenic not near genes chr3R 29329355 intergenic not near genes chr3R 29329537 intergenic not near genes chr3R_5_29325001 chr3R_29325001 RAL-714 1629 chr3R 29384849 29384876 chr3R 29384973 29385000 5 124 1.5 2.5 2.0 1.7 151 chr3R 29384849 intron Ptp99A + chr3R 29384924 intron Ptp99A + chr3R 29385000 intron Ptp99A + chr3R_5_29380001 chr3R_29380001 RAL-714 1630 chr3R 29406616 29406644 chr3R 29407902 29407930 jockey 17 1283 4.0 4.0 4.0 3.4 1314 chr3R 29406616 intron Ptp99A + chr3R 29407273 intron Ptp99A + chr3R 29407930 intron Ptp99A + chr3R_17_29405001 chr3R_29405001 RAL-714 1631 chr3R 29472011 29472036 chr3R 29472104 29472129 7 92 4.5 2.5 3.5 1.6 118 chr3R 29472011 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-714 1632 chr3R 29505892 29505924 chr3R 29505969 29506000 4 76 2.0 2.5 2.2 1.2 108 chr3R 29505892 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506000 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-714 1633 chr3R 29539441 29539459 chr3R 29539517 29539535 8 76 0.0 0.0 0.0 8.0 94 chr3R 29539441 intergenic not near genes chr3R 29539488 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-714 1634 chr3R 29550261 29550281 chr3R 29550342 29550344 4 76 3.0 3.5 3.2 1.0 83 chr3R 29550261 intergenic not near genes chr3R 29550302 intergenic not near genes chr3R 29550344 intergenic not near genes chr3R_4_29550001 chr3R_29550001 RAL-714 1635 chr3R 29590374 29590390 chr3R 29590467 29590483 17 93 2.0 5.5 3.8 3.5 109 chr3R 29590374 intron CG31041 - chr3R 29590428 intron CG31041 - chr3R 29590483 intron CG31041 - chr3R_17_29590001 chr3R_29590001 RAL-714 1636 chr3R 29592748 29592762 chr3R 29592826 29592840 4 78 1.0 1.5 1.2 1.8 92 chr3R 29592748 intron alph + chr3R 29592794 intron alph + chr3R 29592840 intron alph + chr3R_4_29590001 chr3R_29590001 RAL-714 1637 chr3R 29627562 29627596 chr3R 29627653 29627661 7 86 1.0 2.5 1.8 2.5 99 chr3R 29627562 intergenic not near genes chr3R 29627612 intergenic not near genes chr3R 29627661 intergenic not near genes chr3R_7_29625001 chr3R_29625001 RAL-714 1638 chr3R 29655652 29655673 chr3R 29655731 29655751 6 78 3.5 1.5 2.5 1.7 99 chr3R 29655652 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655751 intron Dop1R2 - chr3R_6_29655001 chr3R_29655001 RAL-714 1639 chr3R 29738264 29738299 chr3R 29739731 29739765 hobo 8 1464 0.5 3.0 1.8 2.9 1501 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739765 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-714 1640 chr3R 29880583 29880600 chr3R 29880668 29880675 5 80 5.0 3.0 4.0 1.0 92 chr3R 29880583 intron CG31038 + chr3R 29880629 intron CG31038 + chr3R 29880675 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-714 1641 chr3R 29882018 29882047 chr3R 29891175 29891204 roo 9 9157 3.0 5.0 4.0 1.8 9186 chr3R 29882018 intron CG31038 + chr3R 29886611 intron CG31038 + chr3R 29891204 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-714 1642 chr3R 29963476 29963508 chr3R 29963577 29963610 8 101 0.0 3.0 1.5 3.2 134 chr3R 29963476 intron TkR99D - chr3R 29963543 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-714 1643 chr3R 29966060 29966073 chr3R 29966139 29966155 6 83 1.5 2.5 2.0 2.0 95 chr3R 29966060 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966155 intron TkR99D - chr3R_6_29965001 chr3R_29965001 RAL-714 1644 chr3R 30013675 30013707 chr3R 30013758 30013790 8 82 2.5 2.5 2.5 2.3 115 chr3R 30013675 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013790 intron CG7920 - chr3R_8_30010001 chr3R_30010001 RAL-714 1645 chr3R 30084863 30084885 chr3R 30086329 30086351 hobo 8 1466 2.5 2.5 2.5 2.3 1488 chr3R 30084863 intron sima + chr3R 30085607 intron sima + chr3R 30086351 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-714 1646 chr3R 30136964 30136978 chr3R 30137043 30137057 4 79 1.5 5.5 3.5 0.9 93 chr3R 30136964 exon AdoR - chr3R 30137010 intron AdoR - chr3R 30137057 intron AdoR - chr3R_4_30135001 chr3R_30135001 RAL-714 1647 chr3R 30238763 30238797 chr3R 30239925 30239962 1360 5 1164 1.0 2.5 1.8 1.8 1199 chr3R 30238763 intergenic not near genes chr3R 30239362 intergenic not near genes chr3R 30239962 intergenic not near genes chr3R_5_30235001 chr3R_30235001 RAL-714 1648 chr3R 30252264 30252529 chr3R 30252391 30252629 16 120 19.0 3.0 11.0 1.3 365 chr3R 30252264 exon CG9682 + chr3R 30252446 exon CG9682 + chr3R 30252629 exon CG9682 + chr3R_16_30250001 chr3R_30250001 RAL-714 1649 chr3R 30262584 30262611 chr3R 30262681 30262708 5 97 1.0 1.0 1.0 2.5 124 chr3R 30262584 intergenic not near genes chr3R 30262646 intergenic not near genes chr3R 30262708 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-714 1650 chr3R 30317326 30317344 chr3R 30324918 30324935 roo 4 7592 2.0 2.0 2.0 1.3 7609 chr3R 30317326 intron hdc + chr3R 30321130 intron hdc + chr3R 30324935 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-714 1651 chr3R 30330495 30330522 chr3R 30330575 30330601 4 76 1.0 0.0 0.5 2.7 106 chr3R 30330495 intron hdc + chr3R 30330548 intron hdc + chr3R 30330601 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-714 1652 chr3R 30364843 30364859 chr3R 30365016 30365032 7 173 2.5 2.0 2.2 2.2 189 chr3R 30364843 3` UTR hdc + chr3R 30364938 3` UTR hdc + chr3R 30365032 3` UTR hdc + chr3R_7_30360001 chr3R_30360001 RAL-714 1653 chr3R 30375540 30375564 chr3R 30383165 30383189 412 5 7622 0.5 2.5 1.5 2.0 7649 chr3R 30375540 intergenic not near genes chr3R 30379364 intergenic not near genes chr3R 30383189 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-714 1654 chr3R 30396219 30396244 chr3R 30404485 30404510 roo 6 8266 1.0 3.5 2.2 1.9 8291 chr3R 30396219 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-714 1655 chr3R 30440692 30440721 chr3R 30440950 30440980 10 258 6.0 3.0 4.5 1.8 288 chr3R 30440692 intron CG15537 - chr3R 30440836 intron CG15537 - chr3R 30440980 intron CG15537 - chr3R_10_30440001 chr3R_30440001 RAL-714 1656 chr3R 30456393 30456421 chr3R 30456469 30456500 6 79 0.5 2.5 1.5 2.4 107 chr3R 30456393 intergenic CG2224 - chr3R 30456446 3` UTR CG2224 - chr3R 30456500 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-714 1657 chr3R 30458011 30458048 chr3R 30458090 30458128 10 80 1.5 2.5 2.0 3.3 117 chr3R 30458011 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_10_30455001 chr3R_30455001 RAL-714 1658 chr3R 30471908 30471935 chr3R 30471978 30472011 5 73 1.0 5.0 3.0 1.2 103 chr3R 30471908 intron PH4alphaEFB + chr3R 30471960 intron PH4alphaEFB + chr3R 30472011 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-714 1659 chr3R 30480472 30480513 chr3R 30482940 30482981 jockey 15 2467 2.5 5.5 4.0 3.0 2509 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-714 1660 chr3R 30495171 30495188 chr3R 30495287 30495308 5 116 0.5 3.0 1.8 1.8 137 chr3R 30495171 intron PH4alphaMP - chr3R 30495240 intron PH4alphaMP - chr3R 30495308 intron PH4alphaMP - chr3R_5_30495001 chr3R_30495001 RAL-714 1661 chr3R 30498408 30498429 chr3R 30498608 30498629 4 200 0.0 1.0 0.5 2.7 221 chr3R 30498408 intron PH4alphaNE1 - chr3R 30498518 intron PH4alphaNE1 - chr3R 30498629 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-714 1662 chr3R 30544655 30544687 chr3R 30544735 30544766 7 79 1.0 2.0 1.5 2.8 111 chr3R 30544655 intron tmod + chr3R 30544710 intron tmod + chr3R 30544766 intron tmod + chr3R_7_30540001 chr3R_30540001 RAL-714 1663 chr3R 30551281 30551297 chr3R 30551365 30551381 8 84 1.5 2.0 1.8 2.9 100 chr3R 30551281 intron tmod + chr3R 30551331 intron tmod + chr3R 30551381 intron tmod + chr3R_8_30550001 chr3R_30550001 RAL-714 1664 chr3R 30592504 30592536 chr3R 30592613 30592646 12 110 5.5 3.5 4.5 2.2 142 chr3R 30592504 intergenic CG2246 - chr3R 30592575 intergenic CG2246 - chr3R 30592646 intergenic CG2246 - chr3R_12_30590001 chr3R_30590001 RAL-714 1665 chr3R 30627602 30627634 chr3R 30627682 30627707 12 78 2.5 5.0 3.8 2.5 105 chr3R 30627602 3` UTR CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627707 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-714 1666 chr3R 30679533 30679552 chr3R 30687002 30687021 blood 7 7468 1.5 2.0 1.8 2.5 7488 chr3R 30679533 intergenic not near genes chr3R 30683277 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-714 1667 chr3R 30690163 30690186 chr3R 30690247 30690269 9 83 3.5 3.0 3.2 2.1 106 chr3R 30690163 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690269 intergenic Spn100A + chr3R_9_30690001 chr3R_30690001 RAL-714 1668 chr3R 30859405 30859424 chr3R 30859483 30859502 4 78 1.0 1.5 1.2 1.8 97 chr3R 30859405 intergenic not near genes chr3R 30859454 intergenic not near genes chr3R 30859502 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-714 1669 chr3R 30881498 30881525 chr3R 30881606 30881633 9 108 1.0 4.0 2.5 2.6 135 chr3R 30881498 intergenic CG15547 -,CG12071 - chr3R 30881566 intergenic CG15547 - chr3R 30881633 intergenic CG15547 - chr3R_9_30880001 chr3R_30880001 RAL-714 1670 chr3R 30985684 30985712 chr3R 30985769 30985797 7 85 1.0 1.5 1.2 3.2 113 chr3R 30985684 intron 5-HT7 - chr3R 30985740 intron 5-HT7 - chr3R 30985797 intron 5-HT7 - chr3R_7_30985001 chr3R_30985001 RAL-714 1671 chr3R 31042116 31042142 chr3R 31042203 31042228 8 87 2.5 6.0 4.2 1.5 112 chr3R 31042116 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042228 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-714 1672 chr3R 31067029 31067055 chr3R 31067151 31067165 9 124 2.0 0.5 1.2 4.1 136 chr3R 31067029 intron Sox100B + chr3R 31067097 intron Sox100B + chr3R 31067165 intron Sox100B + chr3R_9_31065001 chr3R_31065001 RAL-714 1673 chr3R 31074243 31074261 chr3R 31081841 31081859 springer 4 7598 1.5 1.0 1.2 1.8 7616 chr3R 31074243 intron Sox100B + chr3R 31078051 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-714 1674 chr3R 31146747 31146776 chr3R 31146825 31146854 8 78 4.0 4.0 4.0 1.6 107 chr3R 31146747 intron Gycbeta100B + chr3R 31146800 intron Gycbeta100B + chr3R 31146854 intron Gycbeta100B + chr3R_8_31145001 chr3R_31145001 RAL-714 1675 chr3R 31274362 31274394 chr3R 31274440 31274471 10 77 2.0 1.5 1.8 3.6 109 chr3R 31274362 intergenic not near genes chr3R 31274416 intergenic not near genes chr3R 31274471 intergenic not near genes chr3R_10_31270001 chr3R_31270001 RAL-714 1676 chr3R 31279396 31279409 chr3R 31285564 31285598 diver 4 6184 1.5 2.0 1.8 1.4 6202 chr3R 31279396 intergenic not near genes chr3R 31282497 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-714 1677 chr3R 31348054 31348090 chr3R 31348131 31348167 7 77 1.5 1.5 1.5 2.8 113 chr3R 31348054 intron CG34347 + chr3R 31348110 intron CG34347 + chr3R 31348167 intron CG34347 + chr3R_7_31345001 chr3R_31345001 RAL-714 1678 chr3R 31413094 31413123 chr3R 31418294 31418323 copia 8 5200 1.5 0.5 1.0 4.0 5229 chr3R 31413094 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-714 1679 chr3R 31426884 31426912 chr3R 31426976 31427004 10 92 2.5 3.0 2.8 2.6 120 chr3R 31426884 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_10_31425001 chr3R_31425001 RAL-714 1680 chr3R 31435365 31435378 chr3R 31435517 31435529 5 152 2.5 3.0 2.8 1.3 164 chr3R 31435365 intron Gprk2 + chr3R 31435447 intron Gprk2 + chr3R 31435529 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-714 1681 chr3R 31630060 31630083 chr3R 31630165 31630188 8 105 1.5 1.0 1.2 3.6 128 chr3R 31630060 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630188 intron kek6 + chr3R_8_31630001 chr3R_31630001 RAL-714 1682 chr3R 31691531 31691562 chr3R 31696297 31696328 Doc 11 4762 2.0 4.5 3.2 2.6 4797 chr3R 31691531 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-714 1683 chr3R 31726669 31726678 chr3R 31726755 31726764 4 86 3.5 5.0 4.2 0.8 95 chr3R 31726669 intron ttk + chr3R 31726716 intron ttk + chr3R 31726764 intron ttk + chr3R_4_31725001 chr3R_31725001 RAL-714 1684 chr3R 31851231 31851262 chr3R 31851314 31851345 5 83 0.5 1.0 0.8 2.8 114 chr3R 31851231 intergenic heph - chr3R 31851288 intergenic heph - chr3R 31851345 intergenic heph - chr3R_5_31850001 chr3R_31850001 RAL-714 1685 chr3R 31902211 31902233 chr3R 31902379 31902401 10 167 2.0 7.5 4.8 1.7 190 chr3R 31902211 intron heph - chr3R 31902306 intron heph - chr3R 31902401 intron heph - chr3R_10_31900001 chr3R_31900001 RAL-714 1686 chr3R 31911681 31911797 chr3R 31911767 31911883 13 85 0.0 0.0 0.0 13.0 202 chr3R 31911681 intron heph - chr3R 31911782 intron heph - chr3R 31911883 intron heph - chr3R_13_31910001 chr3R_31910001 RAL-714 1687 chr3R 31931197 31931212 chr3R 31931280 31931295 5 83 5.0 4.5 4.8 0.9 98 chr3R 31931197 intron heph - chr3R 31931246 intron heph - chr3R 31931295 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-714 1688 chr3R 31953145 31953164 chr3R 31953223 31953242 6 78 2.0 2.0 2.0 2.0 97 chr3R 31953145 intron heph - chr3R 31953194 intron heph - chr3R 31953242 intron heph - chr3R_6_31950001 chr3R_31950001 RAL-714 1689 chr3R 31997991 31998016 chr3R 32005460 32005485 blood 7 7470 2.0 2.5 2.2 2.2 7494 chr3R 31997991 intron heph - chr3R 32001738 intron heph - chr3R 32005485 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-714 1690 chr3R 32013286 32013304 chr3R 32013404 32013422 5 118 4.0 0.0 2.0 1.7 136 chr3R 32013286 intron,5` UTR heph -,CR45556 + chr3R 32013354 intron,5` UTR heph -,CR45556 + chr3R 32013422 intron heph - chr3R_5_32010001 chr3R_32010001 RAL-714 1691 chr3R 32039963 32039993 chr3R 32040064 32040094 8 101 0.5 2.0 1.2 3.6 131 chr3R 32039963 intergenic CG2053 + chr3R 32040028 intergenic CG2053 + chr3R 32040094 intergenic CG2053 + chr3R_8_32040001 chr3R_32040001 RAL-714 1692 chr4 257405 257434 chr4 257575 257604 6 170 1.0 3.5 2.2 1.9 199 chr4 257405 intron RhoGAP102A + chr4 257504 intron RhoGAP102A + chr4 257604 intron RhoGAP102A + chr4_6_255001 chr4_255001 RAL-714 1693 chr4 671613 671636 chr4 680195 680219 Tirant 10 8582 2.0 4.5 3.2 2.4 8606 chr4 671613 intron CG11360 + chr4 675916 intron CG11360 + chr4 680219 intron CG11360 + chr4_10_675001 chr4_675001 RAL-714 1694 chr4 694908 694929 chr4 694989 695010 4 81 2.0 2.5 2.2 1.2 102 chr4 694908 intron myo - chr4 694959 intron myo - chr4 695010 intron myo - chr4_4_690001 chr4_690001 RAL-714 1695 chr4 959625 959646 chr4 959804 959825 4 179 2.0 1.0 1.5 1.6 200 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959725 5` UTR CR44030 + chr4 959825 5` UTR CR44030 + chr4_4_955001 chr4_955001 RAL-714 1696 chrX 428421 428452 chrX 434606 434635 3S18 6 6184 4.0 3.0 3.5 1.3 6214 chrX 428421 intron CG32816 - chrX 431528 intron CG32816 - chrX 434635 intron CG32816 - chrX_6_430001 chrX_430001 RAL-714 1697 chrX 551423 551450 chrX 558984 559012 412 4 7561 3.5 2.5 3.0 1.0 7589 chrX 551423 intron Appl + chrX 555218 intron Appl + chrX 559012 intron Appl + chrX_4_555001 chrX_555001 RAL-714 1698 chrX 667656 667684 chrX 667740 667767 5 84 1.5 2.0 1.8 1.8 111 chrX 667656 intergenic not near genes chrX 667712 intergenic not near genes chrX 667767 intergenic not near genes chrX_5_665001 chrX_665001 RAL-714 1699 chrX 670268 670286 chrX 670347 670366 4 80 0.0 0.0 0.0 4.0 98 chrX 670268 intergenic not near genes chrX 670317 intergenic not near genes chrX 670366 intergenic not near genes chrX_4_670001 chrX_670001 RAL-714 1700 chrX 680841 680868 chrX 680924 680951 9 82 4.0 1.0 2.5 2.6 110 chrX 680841 intergenic not near genes chrX 680896 intergenic not near genes chrX 680951 intergenic not near genes chrX_9_680001 chrX_680001 RAL-714 1701 chrX 695291 695324 chrX 695368 695399 7 75 1.0 2.0 1.5 2.8 108 chrX 695291 intron sdk + chrX 695345 intron sdk + chrX 695399 intron sdk + chrX_7_695001 chrX_695001 RAL-714 1702 chrX 706807 706827 chrX 707171 707186 5 362 0.0 2.5 1.2 2.3 379 chrX 706807 intron sdk + chrX 706996 intron sdk + chrX 707186 intron sdk + chrX_5_705001 chrX_705001 RAL-714 1703 chrX 715280 715317 chrX 715355 715391 6 69 0.5 2.0 1.2 2.7 111 chrX 715280 intron sdk + chrX 715336 intron sdk + chrX 715391 intron sdk + chrX_6_715001 chrX_715001 RAL-714 1704 chrX 778128 778155 chrX 778217 778244 10 89 3.5 0.5 2.0 3.3 116 chrX 778128 intron fz3 + chrX 778186 intron fz3 + chrX 778244 intron fz3 + chrX_10_775001 chrX_775001 RAL-714 1705 chrX 780593 780603 chrX 780669 780679 4 76 2.5 0.0 1.2 1.8 86 chrX 780593 intron fz3 + chrX 780636 intron fz3 + chrX 780679 intron fz3 + chrX_4_780001 chrX_780001 RAL-714 1706 chrX 806786 806805 chrX 806881 806901 7 96 6.5 3.5 5.0 1.2 115 chrX 806786 intron Sec22 + chrX 806844 intron Sec22 + chrX 806901 intron Sec22 + chrX_7_805001 chrX_805001 RAL-714 1707 chrX 827602 827634 chrX 835394 835420 roo 5 7790 3.0 0.0 1.5 2.0 7818 chrX 827602 intron CG43867 - chrX 831511 intron CG43867 - chrX 835420 intron CG43867 - chrX_5_830001 chrX_830001 RAL-714 1708 chrX 885673 885684 chrX 885814 885823 6 139 31.5 21.5 26.5 0.2 150 chrX 885673 intron CG43867 - chrX 885748 intron CG43867 - chrX 885823 intron CG43867 - chrX_6_885001 chrX_885001 RAL-714 1709 chrX 906703 906718 chrX 908492 908505 S-element 6 1788 2.5 3.5 3.0 1.5 1802 chrX 906703 intron CG43867 - chrX 907604 intron CG43867 - chrX 908505 intron CG43867 - chrX_6_905001 chrX_905001 RAL-714 1710 chrX 948483 948518 chrX 948649 948685 10 167 1.0 2.5 1.8 3.6 202 chrX 948483 intergenic CG3690 - chrX 948584 3` UTR CG3690 - chrX 948685 3` UTR CG3690 - chrX_10_945001 chrX_945001 RAL-714 1711 chrX 990221 990244 chrX 990302 990324 4 81 2.5 1.5 2.0 1.3 103 chrX 990221 intergenic CG18823 + chrX 990272 intergenic CG18823 + chrX 990324 intergenic CG18823 + chrX_4_990001 chrX_990001 RAL-714 1712 chrX 1051078 1051088 chrX 1051156 1051166 4 78 5.0 6.0 5.5 0.6 88 chrX 1051078 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051166 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-714 1713 chrX 1253737 1253748 chrX 1253818 1253827 4 81 6.5 4.0 5.2 0.6 90 chrX 1253737 intron Atf3 - chrX 1253782 intron Atf3 - chrX 1253827 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-714 1714 chrX 1308120 1308143 chrX 1308204 1308227 7 84 0.5 3.0 1.8 2.5 107 chrX 1308120 intron DAAM - chrX 1308174 intron DAAM - chrX 1308227 intron DAAM - chrX_7_1305001 chrX_1305001 RAL-714 1715 chrX 1357777 1357808 chrX 1367947 1367978 Doc 6 10170 0.5 2.0 1.2 2.7 10201 chrX 1357777 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-714 1716 chrX 1518036 1518068 chrX 1523438 1523470 jockey 6 5402 1.5 3.0 2.2 1.9 5434 chrX 1518036 intergenic inc + chrX 1520753 intergenic not near genes chrX 1523470 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-714 1717 chrX 1559919 1559951 chrX 1560002 1560033 8 80 2.5 3.5 3.0 2.0 114 chrX 1559919 intron Mur2B - chrX 1559976 intron Mur2B - chrX 1560033 intron Mur2B - chrX_8_1555001 chrX_1555001 RAL-714 1718 chrX 1627973 1627997 chrX 1635441 1635464 gtwin 7 7468 1.5 2.5 2.0 2.3 7491 chrX 1627973 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635464 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-714 1719 chrX 1954888 1954917 chrX 1962828 1962857 Stalker2 8 7939 3.0 3.5 3.2 1.9 7969 chrX 1954888 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962857 intron Hr4 + chrX_8_1955001 chrX_1955001 RAL-714 1720 chrX 2399836 2399863 chrX 2408189 2408215 roo 6 8352 2.5 1.5 2.0 2.0 8379 chrX 2399836 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408215 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-714 1721 chrX 2578810 2578845 chrX 2578902 2578937 6 92 3.5 0.5 2.0 2.0 127 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-714 1722 chrX 2610385 2610399 chrX 2617502 2617514 HMS-Beagle 4 7116 1.5 2.0 1.8 1.4 7129 chrX 2610385 intergenic CG8636 - chrX 2613950 intergenic not near genes chrX 2617514 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-714 1723 chrX 2635372 2635395 chrX 2635481 2635504 5 108 2.5 5.5 4.0 1.0 132 chrX 2635372 intron sgg + chrX 2635438 intron sgg + chrX 2635504 intron sgg + chrX_5_2635001 chrX_2635001 RAL-714 1724 chrX 2664386 2664413 chrX 2665530 2665559 1360 7 1145 1.0 2.5 1.8 2.5 1173 chrX 2664386 intron sgg + chrX 2664972 intron sgg + chrX 2665559 intron sgg + chrX_7_2660001 chrX_2660001 RAL-714 1725 chrX 2888112 2888138 chrX 2888190 2888216 7 78 2.0 2.5 2.2 2.2 104 chrX 2888112 intron kirre + chrX 2888164 intron kirre + chrX 2888216 intron kirre + chrX_7_2885001 chrX_2885001 RAL-714 1726 chrX 2932229 2932252 chrX 2932312 2932335 6 81 3.5 0.0 1.8 2.1 106 chrX 2932229 intron,exon kirre +,CG32793 + chrX 2932282 intron,exon kirre +,CG32793 + chrX 2932335 intron,exon kirre +,CG32793 + chrX_6_2930001 chrX_2930001 RAL-714 1727 chrX 3031180 3031190 chrX 3031263 3031274 6 84 0.5 3.5 2.0 2.0 94 chrX 3031180 intron kirre + chrX 3031227 intron kirre + chrX 3031274 intron kirre + chrX_6_3030001 chrX_3030001 RAL-714 1728 chrX 3092738 3092760 chrX 3093010 3093032 5 272 2.0 3.5 2.8 1.3 294 chrX 3092738 intron kirre + chrX 3092885 intron kirre + chrX 3093032 intron kirre + chrX_5_3090001 chrX_3090001 RAL-714 1729 chrX 3408983 3409017 chrX 3409060 3409094 8 76 0.5 1.0 0.8 4.4 111 chrX 3408983 intron,intron CR44999 +,CG12535 - chrX 3409038 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_8_3405001 chrX_3405001 RAL-714 1730 chrX 3415015 3415051 chrX 3421200 3421236 3S18 6 6185 0.5 0.0 0.2 5.0 6221 chrX 3415015 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-714 1731 chrX 3437432 3437455 chrX 3437506 3437530 5 75 1.5 1.5 1.5 2.0 98 chrX 3437432 intron,intron CR44999 +,CG12535 - chrX 3437481 intron,intron CR44999 +,CG12535 - chrX 3437530 intron,intron CR44999 +,CG12535 - chrX_5_3435001 chrX_3435001 RAL-714 1732 chrX 3459988 3460011 chrX 3460065 3460088 6 77 2.5 1.5 2.0 2.0 100 chrX 3459988 intron,intron CR44999 +,CG16782 - chrX 3460038 intron,5` UTR CR44999 +,CG16782 - chrX 3460088 intron,5` UTR CR44999 +,CG16782 - chrX_6_3460001 chrX_3460001 RAL-714 1733 chrX 3476344 3476364 chrX 3476426 3476446 4 82 0.5 0.5 0.5 2.7 102 chrX 3476344 intron CR44999 + chrX 3476395 intron CR44999 + chrX 3476446 intron CR44999 + chrX_4_3475001 chrX_3475001 RAL-714 1734 chrX 3513757 3513786 chrX 3513840 3513869 4 83 1.0 1.0 1.0 2.0 112 chrX 3513757 intron,intron CR44999 +,CG32791 - chrX 3513813 intron,intron CR44999 +,CG32791 - chrX 3513869 intron,intron CR44999 +,CG32791 - chrX_4_3510001 chrX_3510001 RAL-714 1735 chrX 3535408 3535420 chrX 3535498 3535510 6 91 1.0 0.5 0.8 3.3 102 chrX 3535408 intron CG32791 - chrX 3535459 intron CG32791 - chrX 3535510 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-714 1736 chrX 3595033 3595042 chrX 3595111 3595119 5 77 0.0 5.0 2.5 1.4 86 chrX 3595033 intron AstA-R1 + chrX 3595076 intron AstA-R1 + chrX 3595119 intron AstA-R1 + chrX_5_3595001 chrX_3595001 RAL-714 1737 chrX 3597550 3597572 chrX 3619717 3619740 roo 9 22168 2.5 1.5 2.0 3.0 22190 chrX 3597550 intron AstA-R1 + chrX 3608645 intron AstA-R1 + chrX 3619740 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-714 1738 chrX 3629848 3629883 chrX 3629933 3629968 6 85 1.0 1.5 1.2 2.7 120 chrX 3629848 intron AstA-R1 + chrX 3629908 intron AstA-R1 + chrX 3629968 intron AstA-R1 + chrX_6_3625001 chrX_3625001 RAL-714 1739 chrX 3630544 3630572 chrX 3630620 3630648 5 76 0.5 2.0 1.2 2.3 104 chrX 3630544 intron AstA-R1 + chrX 3630596 intron AstA-R1 + chrX 3630648 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-714 1740 chrX 3713106 3713137 chrX 3713214 3713246 4 108 3.0 1.0 2.0 1.3 140 chrX 3713106 intron Rala - chrX 3713176 intron Rala - chrX 3713246 intron Rala - chrX_4_3710001 chrX_3710001 RAL-714 1741 chrX 3726766 3726794 chrX 3730163 3730183 NOF 4 3389 3.0 0.0 1.5 1.6 3417 chrX 3726766 intron tlk + chrX 3728474 intron tlk + chrX 3730183 intron tlk + chrX_4_3725001 chrX_3725001 RAL-714 1742 chrX 3842329 3842352 chrX 3842570 3842593 pogo 4 241 1.5 3.0 2.2 1.2 264 chrX 3842329 intron ec + chrX 3842461 intron ec + chrX 3842593 intron ec + chrX_4_3840001 chrX_3840001 RAL-714 1743 chrX 3881274 3881300 chrX 3881412 3881439 5 139 3.5 3.0 3.2 1.2 165 chrX 3881274 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881439 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-714 1744 chrX 3907473 3907493 chrX 3908202 3908221 8 729 2.5 1.5 2.0 2.7 748 chrX 3907473 intron CG42541 - chrX 3907847 intron CG42541 - chrX 3908221 intron CG42541 - chrX_8_3905001 chrX_3905001 RAL-714 1745 chrX 3915525 3915549 chrX 3915612 3915636 5 87 0.5 3.0 1.8 1.8 111 chrX 3915525 intron CG42541 - chrX 3915580 intron CG42541 - chrX 3915636 intron CG42541 - chrX_5_3915001 chrX_3915001 RAL-714 1746 chrX 3980880 3980887 chrX 3980957 3980969 4 78 9.5 1.0 5.2 0.6 89 chrX 3980880 intergenic not near genes chrX 3980924 intergenic not near genes chrX 3980969 intergenic not near genes chrX_4_3980001 chrX_3980001 RAL-714 1747 chrX 3986862 3986889 chrX 3994495 3994522 412 4 7633 3.0 0.5 1.8 1.4 7660 chrX 3986862 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994522 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-714 1748 chrX 4067987 4067988 chrX 10754861 10754864 4 6686874 11.0 15.5 13.2 0.3 6686877 chrX 4067987 intergenic not near genes chrX 7411426 3` UTR CG42246 - chrX 10754864 intron Rph - chrX_4_7410001 chrX_7410001 RAL-714 1749 chrX 4132413 4132423 chrX 4132490 4132500 5 77 1.0 2.0 1.5 2.0 87 chrX 4132413 3` UTR GlcAT-I + chrX 4132456 3` UTR GlcAT-I + chrX 4132500 3` UTR GlcAT-I + chrX_5_4130001 chrX_4130001 RAL-714 1750 chrX 4157890 4157923 chrX 4164925 4164958 297 10 7034 2.5 1.0 1.8 3.6 7068 chrX 4157890 intron Fas2 - chrX 4161424 intron Fas2 - chrX 4164958 intron Fas2 - chrX_10_4160001 chrX_4160001 RAL-714 1751 chrX 4206227 4206256 chrX 4206341 4206369 7 113 0.0 2.0 1.0 3.5 142 chrX 4206227 intergenic Fas2 - chrX 4206298 intergenic Fas2 - chrX 4206369 intergenic Fas2 - chrX_7_4205001 chrX_4205001 RAL-714 1752 chrX 4324399 4324413 chrX 4324476 4324490 4 77 0.0 3.5 1.8 1.4 91 chrX 4324399 intron norpA + chrX 4324444 intron norpA + chrX 4324490 intron norpA + chrX_4_4320001 chrX_4320001 RAL-714 1753 chrX 4439806 4439823 chrX 4439895 4439912 4 89 1.5 2.5 2.0 1.3 106 chrX 4439806 intron,intron CR32773 -,bi + chrX 4439859 intron,intron CR32773 -,bi + chrX 4439912 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-714 1754 chrX 4660825 4660847 chrX 4660924 4660946 7 99 1.5 0.0 0.8 3.9 121 chrX 4660825 intron CG3009 - chrX 4660886 intron CG3009 - chrX 4660946 intron CG3009 - chrX_7_4660001 chrX_4660001 RAL-714 1755 chrX 4700397 4700416 chrX 4700736 4700759 jockey 5 341 2.0 1.5 1.8 1.8 362 chrX 4700397 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700759 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-714 1756 chrX 4731814 4731832 chrX 4736907 4736925 jockey 4 5093 3.5 0.5 2.0 1.3 5111 chrX 4731814 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736925 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-714 1757 chrX 4763261 4763277 chrX 4763749 4763765 Stalker4 4 488 0.0 2.5 1.2 1.8 504 chrX 4763261 intergenic not near genes chrX 4763513 intergenic not near genes chrX 4763765 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-714 1758 chrX 4792386 4792409 chrX 4792819 4792842 jockey 5 433 1.5 5.5 3.5 1.1 456 chrX 4792386 intergenic not near genes chrX 4792614 intergenic not near genes chrX 4792842 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-714 1759 chrX 4827993 4828000 chrX 4835346 4835370 Stalker4 6 7365 3.0 5.5 4.2 1.2 7377 chrX 4827993 intergenic not near genes chrX 4831682 intergenic not near genes chrX 4835370 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-714 1760 chrX 4885772 4885808 chrX 4885865 4885886 11 87 4.5 4.0 4.2 2.1 114 chrX 4885772 intron CG42594 + chrX 4885829 intron CG42594 + chrX 4885886 intron CG42594 + chrX_11_4885001 chrX_4885001 RAL-714 1761 chrX 4884938 4884963 chrX 4887173 4887198 10 2235 17.0 14.5 15.8 0.6 2260 chrX 4884938 intron CG42594 + chrX 4886068 intron CG42594 + chrX 4887198 intron CG42594 + chrX_10_4885001 chrX_4885001 RAL-714 1762 chrX 4990049 4990062 chrX 4997263 4997276 roo 4 7214 2.0 1.0 1.5 1.6 7227 chrX 4990049 intron CR44833 - chrX 4993662 intron CR44833 - chrX 4997276 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-714 1763 chrX 5096278 5096305 chrX 5103843 5103870 springer 4 7565 2.5 1.0 1.8 1.4 7592 chrX 5096278 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-714 1764 chrX 5272831 5272844 chrX 5272917 5272931 4 86 1.5 2.5 2.0 1.3 100 chrX 5272831 intergenic not near genes chrX 5272881 intergenic not near genes chrX 5272931 intergenic not near genes chrX_4_5270001 chrX_5270001 RAL-714 1765 chrX 5349279 5349302 chrX 5349356 5349379 6 77 3.0 2.5 2.8 1.6 100 chrX 5349279 intron SK + chrX 5349329 intron SK + chrX 5349379 intron SK + chrX_6_5345001 chrX_5345001 RAL-714 1766 chrX 5524852 5524873 chrX 5528715 5528736 412 4 3863 2.5 1.0 1.8 1.4 3884 chrX 5524852 intergenic snoRNA:Psi28S-3342 - chrX 5526794 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-714 1767 chrX 5541570 5541599 chrX 5541651 5541680 8 81 6.0 6.5 6.2 1.1 110 chrX 5541570 intron Vsx2 - chrX 5541625 intron Vsx2 - chrX 5541680 intron Vsx2 - chrX_8_5540001 chrX_5540001 RAL-714 1768 chrX 5725039 5725053 chrX 5725141 5725156 5 103 1.0 2.5 1.8 1.8 117 chrX 5725039 intron CG32758 - chrX 5725098 intron CG32758 - chrX 5725156 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-714 1769 chrX 6115902 6115923 chrX 6116039 6116059 7 137 0.0 3.0 1.5 2.8 157 chrX 6115902 intron Ca-alpha1T - chrX 6115980 intron Ca-alpha1T - chrX 6116059 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-714 1770 chrX 6171586 6171616 chrX 6179019 6179048 Quasimodo 4 7432 0.0 1.5 0.8 2.2 7462 chrX 6171586 intron Ca-alpha1T - chrX 6175317 intron Ca-alpha1T - chrX 6179048 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-714 1771 chrX 6197245 6197263 chrX 6197323 6197342 5 78 2.0 3.5 2.8 1.3 97 chrX 6197245 exon CG32751 - chrX 6197294 exon CG32751 - chrX 6197342 exon CG32751 - chrX_5_6195001 chrX_6195001 RAL-714 1772 chrX 6215350 6215372 chrX 6215432 6215455 10 83 0.5 3.0 1.8 3.6 105 chrX 6215350 intergenic not near genes chrX 6215402 intergenic not near genes chrX 6215455 intergenic not near genes chrX_10_6215001 chrX_6215001 RAL-714 1773 chrX 6312194 6312218 chrX 6312277 6312301 4 83 2.0 1.5 1.8 1.4 107 chrX 6312194 intron CG15894 + chrX 6312248 intron CG15894 + chrX 6312301 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-714 1774 chrX 6314429 6314446 chrX 6314501 6314522 7 75 4.0 1.0 2.5 2.0 93 chrX 6314429 intron CG15894 + chrX 6314476 intron CG15894 + chrX 6314522 intron CG15894 + chrX_7_6310001 chrX_6310001 RAL-714 1775 chrX 6335212 6335229 chrX 6337722 6337739 Tirant 4 2510 0.0 1.0 0.5 2.7 2527 chrX 6335212 intergenic not near genes chrX 6336476 intergenic not near genes chrX 6337739 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-714 1776 chrX 6392870 6392898 chrX 6397634 6397663 Doc 9 4763 2.5 4.0 3.2 2.1 4793 chrX 6392870 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397663 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-714 1777 chrX 6562818 6562851 chrX 6571300 6571330 Tirant 15 8480 3.5 3.5 3.5 3.3 8512 chrX 6562818 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571330 intron CG34417 + chrX_15_6565001 chrX_6565001 RAL-714 1778 chrX 6737527 6737545 chrX 6737599 6737627 4 80 1.5 4.5 3.0 1.0 100 chrX 6737527 intron CG3168 - chrX 6737577 intron CG3168 - chrX 6737627 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-714 1779 chrX 6897572 6897700 chrX 6897650 6897810 8 98 2.5 2.0 2.2 2.5 238 chrX 6897572 intergenic not near genes chrX 6897691 intergenic not near genes chrX 6897810 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-714 1780 chrX 6969889 6969907 chrX 6970037 6970070 4 152 18.0 18.5 18.2 0.2 181 chrX 6969889 intergenic CG4586 + chrX 6969980 5` UTR CG4586 + chrX 6970070 exon CG4586 + chrX_4_6965001 chrX_6965001 RAL-714 1781 chrX 6989504 6989529 chrX 6989591 6989616 6 87 1.5 1.5 1.5 2.4 112 chrX 6989504 intron ogre - chrX 6989560 intron ogre - chrX 6989616 intron ogre - chrX_6_6985001 chrX_6985001 RAL-714 1782 chrX 7023601 7023631 chrX 7030990 7031021 Tabor 8 7390 5.5 1.5 3.5 1.8 7420 chrX 7023601 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031021 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-714 1783 chrX 7125246 7125275 chrX 7134405 7134433 roo 8 9158 1.0 1.0 1.0 4.0 9187 chrX 7125246 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134433 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-714 1784 chrX 7702907 7702931 chrX 7703346 7703370 jockey 8 438 2.5 4.0 3.2 1.9 463 chrX 7702907 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-714 1785 chrX 7741552 7741574 chrX 7741639 7741639 6 83 5.5 5.0 5.2 1.0 87 chrX 7741552 intergenic not near genes chrX 7741596 intergenic not near genes chrX 7741639 intergenic not near genes chrX_6_7740001 chrX_7740001 RAL-714 1786 chrX 7784236 7784260 chrX 7784538 7784543 jockey 4 297 4.5 3.0 3.8 0.8 307 chrX 7784236 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784543 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-714 1787 chrX 7999455 7999468 chrX 7999535 7999539 4 77 4.0 7.0 5.5 0.6 84 chrX 7999455 exon Tbh + chrX 7999497 exon Tbh + chrX 7999539 exon Tbh + chrX_4_7995001 chrX_7995001 RAL-714 1788 chrX 8092287 8092323 chrX 8092372 8092408 7 84 1.5 2.5 2.0 2.3 121 chrX 8092287 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092408 intron Ubc-E2H - chrX_7_8090001 chrX_8090001 RAL-714 1789 chrX 8188703 8188731 chrX 8188789 8188809 9 82 3.5 1.5 2.5 2.6 106 chrX 8188703 intron sdt + chrX 8188756 intron sdt + chrX 8188809 intron sdt + chrX_9_8185001 chrX_8185001 RAL-714 1790 chrX 8331953 8331970 chrX 8332072 8332090 6 120 1.0 4.0 2.5 1.7 137 chrX 8331953 intron nAChRalpha3 - chrX 8332022 intron nAChRalpha3 - chrX 8332090 intron nAChRalpha3 - chrX_6_8330001 chrX_8330001 RAL-714 1791 chrX 8421462 8421494 chrX 8421554 8421586 8 92 2.0 1.0 1.5 3.2 124 chrX 8421462 intron Trf2 + chrX 8421524 intron Trf2 + chrX 8421586 intron Trf2 + chrX_8_8420001 chrX_8420001 RAL-714 1792 chrX 8536758 8536780 chrX 8536834 8536856 6 76 4.5 4.5 4.5 1.1 98 chrX 8536758 intron Nrg + chrX 8536807 intron Nrg + chrX 8536856 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-714 1793 chrX 8605313 8605341 chrX 8605390 8605418 7 77 2.0 1.0 1.5 2.8 105 chrX 8605313 exon Caf1-180 - chrX 8605366 exon Caf1-180 - chrX 8605418 exon Caf1-180 - chrX_7_8605001 chrX_8605001 RAL-714 1794 chrX 8708694 8708716 chrX 8708878 8708899 9 184 16.0 9.5 12.8 0.7 205 chrX 8708694 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708899 intergenic not near genes chrX_9_8705001 chrX_8705001 RAL-714 1795 chrX 8922332 8922353 chrX 8922761 8922787 jockey 7 432 4.5 5.5 5.0 1.2 455 chrX 8922332 intron rdgA + chrX 8922560 intron rdgA + chrX 8922787 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-714 1796 chrX 9129476 9129511 chrX 9129562 9129597 11 85 3.5 1.0 2.2 3.4 121 chrX 9129476 intron fend - chrX 9129536 intron fend - chrX 9129597 intron fend - chrX_11_9125001 chrX_9125001 RAL-714 1797 chrX 9225923 9225957 chrX 9226000 9226032 10 76 4.0 4.0 4.0 2.0 109 chrX 9225923 exon CG15370 + chrX 9225978 exon CG15370 + chrX 9226032 exon CG15370 + chrX_10_9225001 chrX_9225001 RAL-714 1798 chrX 9254357 9254379 chrX 9254436 9254460 4 78 3.5 1.0 2.2 1.2 103 chrX 9254357 intron CG17754 + chrX 9254408 intron CG17754 + chrX 9254460 intron CG17754 + chrX_4_9250001 chrX_9250001 RAL-714 1799 chrX 9337951 9337971 chrX 9338033 9338063 5 90 3.0 3.5 3.2 1.2 112 chrX 9337951 intron CG34449 - chrX 9338007 intron CG34449 - chrX 9338063 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-714 1800 chrX 9508138 9508150 chrX 9509656 9509667 jockey 4 1518 4.0 1.5 2.8 1.1 1529 chrX 9508138 intron CG32700 - chrX 9508902 intron CG32700 - chrX 9509667 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-714 1801 chrX 9575793 9575817 chrX 9576117 9576141 mdg3 11 323 5.5 5.0 5.2 1.8 348 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575967 intron,intron CG32699 -,CG42395 - chrX 9576141 intron,5` UTR CG32699 -,CG42395 - chrX_11_9575001 chrX_9575001 RAL-714 1802 chrX 9784174 9784206 chrX 9784362 9784394 10 188 1.5 2.0 1.8 3.6 220 chrX 9784174 intron CG32698 + chrX 9784284 intron CG32698 + chrX 9784394 intron CG32698 + chrX_10_9780001 chrX_9780001 RAL-714 1803 chrX 10035452 10035466 chrX 10035538 10035552 6 86 1.0 2.5 1.8 2.1 100 chrX 10035452 exon Cht6 + chrX 10035502 exon Cht6 + chrX 10035552 exon Cht6 + chrX_6_10035001 chrX_10035001 RAL-714 1804 chrX 10267305 10267322 chrX 10276455 10276472 roo 4 9150 1.0 0.5 0.8 2.2 9167 chrX 10267305 3` UTR alpha-Man-I - chrX 10271888 intron alpha-Man-I - chrX 10276472 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-714 1805 chrX 10446694 10446716 chrX 10446775 10446798 8 82 1.5 4.0 2.8 2.1 104 chrX 10446694 intron CG32683 - chrX 10446746 intron CG32683 - chrX 10446798 intron CG32683 - chrX_8_10445001 chrX_10445001 RAL-714 1806 chrX 10550338 10550367 chrX 10550416 10550445 7 78 1.0 1.0 1.0 3.5 107 chrX 10550338 intron spri - chrX 10550392 intron spri - chrX 10550445 intron spri - chrX_7_10550001 chrX_10550001 RAL-714 1807 chrX 10550856 10550881 chrX 10552323 10552347 hobo 8 1467 3.0 2.5 2.8 2.1 1491 chrX 10550856 intron spri - chrX 10551602 intron spri - chrX 10552347 intron spri - chrX_8_10550001 chrX_10550001 RAL-714 1808 chrX 10772676 10772694 chrX 10772759 10772777 Tirant 5 83 1.5 0.5 1.0 2.5 101 chrX 10772676 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772777 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-714 1809 chrX 10803038 10803049 chrX 10803122 10803134 4 85 2.5 4.5 3.5 0.9 96 chrX 10803038 intron Imp - chrX 10803086 intron Imp - chrX 10803134 intron Imp - chrX_4_10800001 chrX_10800001 RAL-714 1810 chrX 11087858 11087887 chrX 11087951 11087981 7 94 1.5 0.5 1.0 3.5 123 chrX 11087858 intergenic not near genes chrX 11087920 intergenic not near genes chrX 11087981 intergenic not near genes chrX_7_11085001 chrX_11085001 RAL-714 1811 chrX 11141989 11142064 chrX 11142064 11142139 4 76 0.0 0.0 0.0 4.0 150 chrX 11141989 intergenic CG15199 - chrX 11142064 intergenic CG15199 -,CG15202 + chrX 11142139 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-714 1812 chrX 11268565 11268590 chrX 11270055 11270082 hopper2 10 1492 1.0 3.5 2.2 3.1 1517 chrX 11268565 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270082 intron CG44422 - chrX_10_11265001 chrX_11265001 RAL-714 1813 chrX 11321560 11321588 chrX 11321643 11321671 6 83 1.0 2.0 1.5 2.4 111 chrX 11321560 intergenic sisA - chrX 11321616 3` UTR sisA - chrX 11321671 3` UTR sisA - chrX_6_11320001 chrX_11320001 RAL-714 1814 chrX 11379776 11379792 chrX 11379919 11379937 5 144 3.5 4.0 3.8 1.0 161 chrX 11379776 intron dlg1 + chrX 11379856 intron dlg1 + chrX 11379937 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-714 1815 chrX 11441429 11441464 chrX 11441553 11441588 8 124 1.0 0.5 0.8 4.4 159 chrX 11441429 intron Evi5 - chrX 11441508 intron Evi5 - chrX 11441588 intron Evi5 - chrX_8_11440001 chrX_11440001 RAL-714 1816 chrX 11528612 11528642 chrX 11528923 11528953 8 311 0.5 1.5 1.0 4.0 341 chrX 11528612 intron Drak + chrX 11528782 intron Drak + chrX 11528953 intron Drak + chrX_8_11525001 chrX_11525001 RAL-714 1817 chrX 11633415 11633448 chrX 11640469 11640502 297 5 7054 2.5 0.5 1.5 2.0 7087 chrX 11633415 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640502 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-714 1818 chrX 11719870 11719901 chrX 11719950 11719981 5 80 1.0 1.0 1.0 2.5 111 chrX 11719870 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719981 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-714 1819 chrX 11723794 11723822 chrX 11723881 11723909 8 85 1.0 1.5 1.2 3.6 115 chrX 11723794 3` UTR Tango10 + chrX 11723852 3` UTR Tango10 + chrX 11723909 intergenic Tango10 +,CG15221 + chrX_8_11720001 chrX_11720001 RAL-714 1820 chrX 11922363 11922383 chrX 11922496 11922516 5 133 1.0 3.0 2.0 1.7 153 chrX 11922363 exon Sclp - chrX 11922440 intron Sclp - chrX 11922516 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-714 1821 chrX 11936571 11936585 chrX 11936669 11936684 5 99 0.0 2.0 1.0 2.5 113 chrX 11936571 intron cac - chrX 11936628 intron cac - chrX 11936684 intron cac - chrX_5_11935001 chrX_11935001 RAL-714 1822 chrX 12073751 12073768 chrX 12074022 12074041 4 273 2.0 3.0 2.5 1.1 290 chrX 12073751 intron,intron CR43960 +,Ten-a + chrX 12073896 intron,intron CR43960 +,Ten-a + chrX 12074041 intron,intron CR43960 +,Ten-a + chrX_4_12070001 chrX_12070001 RAL-714 1823 chrX 12168135 12168158 chrX 12173577 12173600 I-element 5 5442 2.0 3.0 2.5 1.4 5465 chrX 12168135 intron Ten-a + chrX 12170868 intron Ten-a + chrX 12173600 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-714 1824 chrX 12350772 12350806 chrX 12350853 12350886 8 79 1.5 0.5 1.0 4.0 114 chrX 12350772 intergenic not near genes chrX 12350829 intergenic not near genes chrX 12350886 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-714 1825 chrX 12528875 12528885 chrX 12528951 12528961 4 76 2.5 0.0 1.2 1.8 86 chrX 12528875 intron CG43921 - chrX 12528918 intron CG43921 - chrX 12528961 intron CG43921 - chrX_4_12525001 chrX_12525001 RAL-714 1826 chrX 12817456 12817467 chrX 12817599 12817610 4 143 4.5 1.0 2.8 1.1 154 chrX 12817456 intron Pde9 - chrX 12817533 intron Pde9 - chrX 12817610 intron Pde9 - chrX_4_12815001 chrX_12815001 RAL-714 1827 chrX 13172350 13172382 chrX 13172424 13172457 11 75 1.5 2.0 1.8 3.9 107 chrX 13172350 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172457 intron CG34411 - chrX_11_13170001 chrX_13170001 RAL-714 1828 chrX 13278175 13278182 chrX 13278258 13278265 4 83 1.0 1.5 1.2 1.8 90 chrX 13278175 intron HDAC4 - chrX 13278220 intron HDAC4 - chrX 13278265 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-714 1829 chrX 13325569 13325594 chrX 13335680 13335707 5 10113 22.5 15.5 19.0 0.2 10138 chrX 13325569 intron IP3K2 + chrX 13330638 intron Jafrac1 + chrX 13335707 3` UTR RpS15Aa - chrX_5_13330001 chrX_13330001 RAL-714 1830 chrX 13374835 13374870 chrX 13374915 13374949 8 80 1.0 1.0 1.0 4.0 114 chrX 13374835 intron CG1640 + chrX 13374892 intron CG1640 + chrX 13374949 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-714 1831 chrX 13442142 13442165 chrX 13442233 13442256 9 91 3.0 0.5 1.8 3.2 114 chrX 13442142 intergenic not near genes chrX 13442199 intergenic not near genes chrX 13442256 intergenic not near genes chrX_9_13440001 chrX_13440001 RAL-714 1832 chrX 14105026 14105049 chrX 14114175 14114200 roo 5 9150 6.5 4.0 5.2 0.8 9174 chrX 14105026 intergenic not near genes chrX 14109613 intergenic not near genes chrX 14114200 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-714 1833 chrX 14295583 14295613 chrX 14295699 14295729 9 114 2.0 3.0 2.5 2.6 146 chrX 14295583 intergenic not near genes chrX 14295656 intergenic not near genes chrX 14295729 intergenic not near genes chrX_9_14295001 chrX_14295001 RAL-714 1834 chrX 14321486 14321518 chrX 14321622 14321655 9 136 1.0 2.5 1.8 3.2 169 chrX 14321486 intergenic not near genes chrX 14321570 intergenic not near genes chrX 14321655 intergenic not near genes chrX_9_14320001 chrX_14320001 RAL-714 1835 chrX 14430389 14430401 chrX 14430896 14430908 4 507 2.5 2.0 2.2 1.2 519 chrX 14430389 intron dpr8 + chrX 14430648 intron dpr8 + chrX 14430908 intron dpr8 + chrX_4_14430001 chrX_14430001 RAL-714 1836 chrX 14514130 14514160 chrX 14514387 14514417 7 257 2.0 3.5 2.8 1.8 287 chrX 14514130 intergenic not near genes chrX 14514274 intergenic not near genes chrX 14514417 intergenic not near genes chrX_7_14510001 chrX_14510001 RAL-714 1837 chrX 14560270 14560303 chrX 14560354 14560387 7 84 6.0 2.0 4.0 1.4 117 chrX 14560270 intergenic not near genes chrX 14560328 intergenic not near genes chrX 14560387 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-714 1838 chrX 14636460 14636491 chrX 14641901 14641931 I-element 5 5441 4.0 1.5 2.8 1.3 5471 chrX 14636460 intron NetA - chrX 14639196 intron NetA - chrX 14641931 intron NetA - chrX_5_14635001 chrX_14635001 RAL-714 1839 chrX 14714043 14714060 chrX 14714125 14714141 4 82 0.5 1.5 1.0 2.0 98 chrX 14714043 intron NetB - chrX 14714092 intron NetB - chrX 14714141 intron NetB - chrX_4_14710001 chrX_14710001 RAL-714 1840 chrX 14767959 14767974 chrX 14768037 14768054 7 80 1.0 0.5 0.8 3.9 95 chrX 14767959 intergenic not near genes chrX 14768006 intergenic not near genes chrX 14768054 intergenic not near genes chrX_7_14765001 chrX_14765001 RAL-714 1841 chrX 14778035 14778058 chrX 14782832 14782840 Doc 4 4792 0.0 1.5 0.8 2.2 4805 chrX 14778035 intergenic CG5347 + chrX 14780438 intergenic not near genes chrX 14782840 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-714 1842 chrX 14818765 14818792 chrX 14823969 14823995 copia 7 5203 1.0 0.0 0.5 4.7 5230 chrX 14818765 intron rut - chrX 14821380 intron rut - chrX 14823995 intron rut - chrX_7_14820001 chrX_14820001 RAL-714 1843 chrX 14968085 14968101 chrX 14968164 14968180 6 79 2.0 2.0 2.0 2.0 95 chrX 14968085 intron eag + chrX 14968132 intron eag + chrX 14968180 intron eag + chrX_6_14965001 chrX_14965001 RAL-714 1844 chrX 15218221 15218244 chrX 15218303 15218326 4 82 1.0 0.5 0.8 2.2 105 chrX 15218221 intergenic not near genes chrX 15218274 intergenic not near genes chrX 15218326 intergenic not near genes chrX_4_15215001 chrX_15215001 RAL-714 1845 chrX 15248268 15248292 chrX 15248344 15248367 5 76 1.5 1.5 1.5 2.0 99 chrX 15248268 intergenic not near genes chrX 15248318 intergenic not near genes chrX 15248367 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-714 1846 chrX 15369849 15369862 chrX 15369932 15369945 4 83 0.5 2.0 1.2 1.8 96 chrX 15369849 intron acj6 - chrX 15369897 intron acj6 - chrX 15369945 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-714 1847 chrX 15413048 15413083 chrX 15417350 15417385 Juan 10 4301 4.5 5.0 4.8 1.7 4337 chrX 15413048 intron Cngl - chrX 15415216 intron Cngl - chrX 15417385 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-714 1848 chrX 15565649 15565670 chrX 15565734 15565756 6 86 0.5 0.5 0.5 4.0 107 chrX 15565649 intergenic not near genes chrX 15565702 intergenic not near genes chrX 15565756 intergenic not near genes chrX_6_15565001 chrX_15565001 RAL-714 1849 chrX 15681399 15681428 chrX 15681480 15681509 5 82 0.0 1.0 0.5 3.3 110 chrX 15681399 intergenic not near genes chrX 15681454 intergenic not near genes chrX 15681509 intergenic not near genes chrX_5_15680001 chrX_15680001 RAL-714 1850 chrX 16059656 16059687 chrX 16059733 16059764 6 77 2.0 0.5 1.2 2.7 108 chrX 16059656 exon Muc14A + chrX 16059710 exon Muc14A + chrX 16059764 exon Muc14A + chrX_6_16055001 chrX_16055001 RAL-714 1851 chrX 16176189 16176216 chrX 16176265 16176293 7 77 4.0 3.0 3.5 1.6 104 chrX 16176189 intergenic not near genes chrX 16176241 intergenic not near genes chrX 16176293 intergenic not near genes chrX_7_16175001 chrX_16175001 RAL-714 1852 chrX 16329443 16329448 chrX 16329522 16329528 4 81 0.0 9.0 4.5 0.7 85 chrX 16329443 intron CG9919 - chrX 16329486 intron CG9919 - chrX 16329528 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-714 1853 chrX 16340669 16340693 chrX 16349826 16349850 roo 5 9157 0.5 0.5 0.5 3.3 9181 chrX 16340669 intergenic Dsp1 + chrX 16345260 intergenic not near genes chrX 16349850 intergenic sl + chrX_5_16345001 chrX_16345001 RAL-714 1854 chrX 16492656 16492675 chrX 16498233 16498251 mdg3 5 5577 2.0 3.5 2.8 1.3 5595 chrX 16492656 intron para - chrX 16495454 intron para - chrX 16498251 intron para - chrX_5_16495001 chrX_16495001 RAL-714 1855 chrX 16648128 16648136 chrX 16648213 16648221 4 85 2.5 8.0 5.2 0.6 93 chrX 16648128 3` UTR mthl1 + chrX 16648174 3` UTR mthl1 + chrX 16648221 3` UTR mthl1 + chrX_4_16645001 chrX_16645001 RAL-714 1856 chrX 16707147 16707159 chrX 16707256 16707269 5 110 0.5 1.5 1.0 2.5 122 chrX 16707147 intron CG4678 + chrX 16707208 intron CG4678 + chrX 16707269 intron CG4678 + chrX_5_16705001 chrX_16705001 RAL-714 1857 chrX 16766003 16766023 chrX 16766086 16766109 4 85 0.0 3.0 1.5 1.6 106 chrX 16766003 intron if - chrX 16766056 intron if - chrX 16766109 intron if - chrX_4_16765001 chrX_16765001 RAL-714 1858 chrX 16785282 16785308 chrX 16785386 16785412 6 104 3.0 6.0 4.5 1.1 130 chrX 16785282 3` UTR CG9609 - chrX 16785347 3` UTR CG9609 - chrX 16785412 3` UTR CG9609 - chrX_6_16785001 chrX_16785001 RAL-714 1859 chrX 16936011 16936033 chrX 16936429 16936451 jockey 6 418 4.0 2.0 3.0 1.5 440 chrX 16936011 intron CG4928 + chrX 16936231 intron CG4928 + chrX 16936451 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-714 1860 chrX 17006364 17006390 chrX 17006753 17006778 6 389 1.0 2.0 1.5 2.4 414 chrX 17006364 intron CG45002 - chrX 17006571 intron CG45002 - chrX 17006778 intron CG45002 - chrX_6_17005001 chrX_17005001 RAL-714 1861 chrX 17011964 17012000 chrX 17012047 17012083 11 82 2.0 1.0 1.5 4.4 119 chrX 17011964 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012083 intron CG45002 - chrX_11_17010001 chrX_17010001 RAL-714 1862 chrX 17122643 17122668 chrX 17122733 17122759 6 91 2.0 2.0 2.0 2.0 116 chrX 17122643 intron CG5004 + chrX 17122701 intron CG5004 + chrX 17122759 intron CG5004 + chrX_6_17120001 chrX_17120001 RAL-714 1863 chrX 17435752 17435778 chrX 17435828 17435854 4 76 2.5 2.0 2.2 1.2 102 chrX 17435752 intron CG12994 - chrX 17435803 intron CG12994 - chrX 17435854 intron CG12994 - chrX_4_17435001 chrX_17435001 RAL-714 1864 chrX 17502351 17502370 chrX 17502431 17502450 6 80 1.0 2.0 1.5 2.4 99 chrX 17502351 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502450 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-714 1865 chrX 17538497 17538525 chrX 17538792 17538820 5 295 3.0 3.0 3.0 1.2 323 chrX 17538497 intron CG43658 - chrX 17538658 intron CG43658 - chrX 17538820 intron CG43658 - chrX_5_17535001 chrX_17535001 RAL-714 1866 chrX 17544177 17544206 chrX 17544269 17544297 6 92 3.5 3.0 3.2 1.4 120 chrX 17544177 intron CG43658 - chrX 17544237 intron CG43658 - chrX 17544297 intron CG43658 - chrX_6_17540001 chrX_17540001 RAL-714 1867 chrX 17556942 17556957 chrX 17557440 17557456 mdg1 8 498 4.5 6.0 5.2 1.3 514 chrX 17556942 intron CG43658 - chrX 17557199 intron CG43658 - chrX 17557456 intron CG43658 - chrX_8_17555001 chrX_17555001 RAL-714 1868 chrX 17609556 17609584 chrX 17609630 17609660 7 75 2.0 3.0 2.5 2.0 104 chrX 17609556 intergenic not near genes chrX 17609608 intergenic not near genes chrX 17609660 intergenic not near genes chrX_7_17605001 chrX_17605001 RAL-714 1869 chrX 17680908 17680921 chrX 17680972 17680986 5 72 0.5 1.5 1.0 2.5 78 chrX 17680908 intron chas - chrX 17680947 intron chas - chrX 17680986 intron chas - chrX_5_17680001 chrX_17680001 RAL-714 1870 chrX 17837364 17837390 chrX 17837440 17837446 5 72 1.0 4.0 2.5 1.4 82 chrX 17837364 intron CG6398 + chrX 17837405 intron CG6398 + chrX 17837446 intron CG6398 + chrX_5_17835001 chrX_17835001 RAL-714 1871 chrX 17968892 17968927 chrX 17969010 17969045 8 118 1.0 1.0 1.0 4.0 153 chrX 17968892 intron Sh - chrX 17968968 intron Sh - chrX 17969045 intron Sh - chrX_8_17965001 chrX_17965001 RAL-714 1872 chrX 18122818 18122849 chrX 18122894 18122925 10 76 4.0 1.5 2.8 2.6 107 chrX 18122818 5` UTR CR45606 + chrX 18122872 5` UTR CR45606 + chrX 18122925 intergenic CR45606 + chrX_10_18120001 chrX_18120001 RAL-714 1873 chrX 18194065 18194092 chrX 18194600 18194627 BS 8 535 2.5 2.5 2.5 2.3 562 chrX 18194065 intron Frq2 + chrX 18194346 intron Frq2 + chrX 18194627 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-714 1874 chrX 18337422 18337450 chrX 18337521 18337550 8 99 2.5 2.0 2.2 2.5 128 chrX 18337422 intron CG6123 - chrX 18337486 intron CG6123 - chrX 18337550 intron CG6123 - chrX_8_18335001 chrX_18335001 RAL-714 1875 chrX 18427388 18427406 chrX 18427799 18427817 6 411 2.0 2.5 2.2 1.9 429 chrX 18427388 intergenic CG42323 + chrX 18427602 intergenic not near genes chrX 18427817 intergenic not near genes chrX_6_18425001 chrX_18425001 RAL-714 1876 chrX 18555377 18555400 chrX 18556898 18556920 transib2 5 1521 0.5 3.0 1.8 1.8 1543 chrX 18555377 intron Bx + chrX 18556148 intron Bx + chrX 18556920 intron Bx + chrX_5_18555001 chrX_18555001 RAL-714 1877 chrX 18645014 18645041 chrX 18645112 18645139 6 98 0.5 1.5 1.0 3.0 125 chrX 18645014 intron Rip11 - chrX 18645076 intron Rip11 - chrX 18645139 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-714 1878 chrX 18774452 18774475 chrX 18774537 18774560 8 85 2.5 5.5 4.0 1.6 108 chrX 18774452 intergenic CCKLR-17D3 - chrX 18774506 intergenic CCKLR-17D3 - chrX 18774560 intergenic not near genes chrX_8_18770001 chrX_18770001 RAL-714 1879 chrX 18896519 18896543 chrX 18896630 18896654 4 111 2.0 1.5 1.8 1.4 135 chrX 18896519 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-714 1880 chrX 18896911 18896937 chrX 18896988 18897014 7 76 3.0 2.5 2.8 1.8 103 chrX 18896911 intergenic CG7349 + chrX 18896962 intergenic CG7349 + chrX 18897014 intergenic CG7349 + chrX_7_18895001 chrX_18895001 RAL-714 1881 chrX 19020592 19020620 chrX 19020670 19020698 8 78 0.0 1.5 0.8 4.4 106 chrX 19020592 intron CG43759 + chrX 19020645 intron CG43759 + chrX 19020698 intron CG43759 + chrX_8_19020001 chrX_19020001 RAL-714 1882 chrX 19097526 19097546 chrX 19097603 19097623 8 77 2.5 2.0 2.2 2.5 97 chrX 19097526 intergenic not near genes chrX 19097574 intergenic not near genes chrX 19097623 intergenic not near genes chrX_8_19095001 chrX_19095001 RAL-714 1883 chrX 19125691 19125720 chrX 19125820 19125849 6 128 1.5 3.5 2.5 1.7 158 chrX 19125691 intron tgy - chrX 19125770 intron tgy - chrX 19125849 intron tgy - chrX_6_19125001 chrX_19125001 RAL-714 1884 chrX 19136555 19136580 chrX 19143475 19143479 412 4 6914 1.5 2.5 2.0 1.3 6924 chrX 19136555 intergenic not near genes chrX 19140017 intergenic not near genes chrX 19143479 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-714 1885 chrX 19156063 19156068 chrX 19156140 19156149 4 80 2.0 2.0 2.0 1.3 86 chrX 19156063 intron RhoGAP18B - chrX 19156106 intron RhoGAP18B - chrX 19156149 intron RhoGAP18B - chrX_4_19155001 chrX_19155001 RAL-714 1886 chrX 13057298 13057300 chrX 19242812 19242814 17 6185514 6.0 4.0 5.0 2.8 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_17_16150001 chrX_16150001 RAL-714 1887 chrX 19282241 19282269 chrX 19282366 19282394 11 125 2.0 1.0 1.5 4.4 153 chrX 19282241 3` UTR CG8034 - chrX 19282318 3` UTR CG8034 - chrX 19282394 3` UTR CG8034 - chrX_11_19280001 chrX_19280001 RAL-714 1888 chrX 19320226 19320252 chrX 19320314 19320340 11 88 1.5 1.5 1.5 4.4 114 chrX 19320226 intron out - chrX 19320283 intron out - chrX 19320340 intron out - chrX_11_19320001 chrX_19320001 RAL-714 1889 chrX 19356991 19357018 chrX 19358432 19358444 NOF 7 1439 2.5 1.0 1.8 2.5 1453 chrX 19356991 intron kek5 + chrX 19357718 intron kek5 + chrX 19358444 intron kek5 + chrX_7_19355001 chrX_19355001 RAL-714 1890 chrX 19430545 19430561 chrX 19430643 19430659 4 98 0.5 1.5 1.0 2.0 114 chrX 19430545 intron kek5 + chrX 19430602 intron kek5 + chrX 19430659 intron kek5 + chrX_4_19430001 chrX_19430001 RAL-714 1891 chrX 19457668 19457685 chrX 19457749 19457768 7 82 2.5 7.5 5.0 1.2 100 chrX 19457668 intron kek5 + chrX 19457718 intron kek5 + chrX 19457768 intron kek5 + chrX_7_19455001 chrX_19455001 RAL-714 1892 chrX 19500557 19500740 chrX 19500634 19500827 18 81 0.0 4.0 2.0 6.0 270 chrX 19500557 intron,intron CG14200 +,Pfrx + chrX 19500692 intron,intron CG14200 +,Pfrx + chrX 19500827 intron,intron CG14200 +,Pfrx + chrX_18_19500001 chrX_19500001 RAL-714 1893 chrX 19543107 19543138 chrX 19543194 19543225 4 87 0.0 3.0 1.5 1.6 118 chrX 19543107 intron CG32532 - chrX 19543166 intron CG32532 - chrX 19543225 intron CG32532 - chrX_4_19540001 chrX_19540001 RAL-714 1894 chrX 19560674 19560689 chrX 19560773 19560788 5 99 1.0 2.0 1.5 2.0 114 chrX 19560674 3` UTR Grip84 - chrX 19560731 3` UTR Grip84 - chrX 19560788 3` UTR Grip84 - chrX_5_19560001 chrX_19560001 RAL-714 1895 chrX 19710071 19710103 chrX 19711857 19711888 S-element 9 1786 1.0 4.0 2.5 2.6 1817 chrX 19710071 intron meso18E - chrX 19710980 intron meso18E - chrX 19711888 intron meso18E - chrX_9_19710001 chrX_19710001 RAL-714 1896 chrX 19744640 19744646 chrX 19744766 19744772 5 126 16.0 23.0 19.5 0.2 132 chrX 19744640 5` UTR,exon CG33932 +,Rpp20 + chrX 19744706 intron,intron CG33932 +,Rpp20 + chrX 19744772 5` UTR,exon CG33932 +,Rpp20 + chrX_5_19740001 chrX_19740001 RAL-714 1897 chrX 19883767 19883793 chrX 19883852 19883878 5 85 3.0 2.0 2.5 1.4 111 chrX 19883767 intron Hers + chrX 19883822 intron Hers + chrX 19883878 intron Hers + chrX_5_19880001 chrX_19880001 RAL-714 1898 chrX 19981231 19981242 chrX 19981310 19981318 5 78 0.0 4.5 2.2 1.6 87 chrX 19981231 intergenic not near genes chrX 19981274 intergenic not near genes chrX 19981318 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-714 1899 chrX 19983862 19983899 chrX 19983942 19983979 4 80 0.5 0.5 0.5 2.7 117 chrX 19983862 intergenic not near genes chrX 19983920 intergenic not near genes chrX 19983979 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-714 1900 chrX 20312892 20312904 chrX 20312970 20312982 4 78 2.0 2.0 2.0 1.3 90 chrX 20312892 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20312982 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-714 1901 chrX 20320301 20320308 chrX 20320378 20320385 5 76 1.0 2.0 1.5 2.0 84 chrX 20320301 intron CG1504 - chrX 20320343 intron CG1504 - chrX 20320385 intron CG1504 - chrX_5_20320001 chrX_20320001 RAL-714 1902 chrX 20377332 20377349 chrX 20378799 20378812 hobo 7 1466 1.0 5.5 3.2 1.7 1480 chrX 20377332 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378812 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-714 1903 chrX 20517245 20517258 chrX 20517331 20517344 8 86 3.0 0.0 1.5 3.2 99 chrX 20517245 intron Tak1 - chrX 20517294 intron Tak1 - chrX 20517344 intron Tak1 - chrX_8_20515001 chrX_20515001 RAL-714 1904 chrX 20528603 20528633 chrX 20528951 20528981 5 348 1.0 0.5 0.8 2.8 378 chrX 20528603 intergenic not near genes chrX 20528792 intergenic not near genes chrX 20528981 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-714 1905 chrX 20658287 20658310 chrX 20658376 20658395 8 88 4.0 5.0 4.5 1.5 108 chrX 20658287 5` UTR Cyp6v1 + chrX 20658341 5` UTR Cyp6v1 + chrX 20658395 5` UTR Cyp6v1 + chrX_8_20655001 chrX_20655001 RAL-714 1906 chrX 20710419 20710437 chrX 20710497 20710515 6 78 0.0 1.0 0.5 4.0 96 chrX 20710419 intergenic not near genes chrX 20710467 intergenic not near genes chrX 20710515 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-714 1907 chrX 20824089 20824096 chrX 20824193 20824200 4 104 2.0 1.0 1.5 1.6 111 chrX 20824089 intron,intron shakB -,CG15450 + chrX 20824144 intron,intron shakB -,CG15450 + chrX 20824200 intron,intron shakB -,CG15450 + chrX_4_20820001 chrX_20820001 RAL-714 1908 chrX 20940721 20940751 chrX 20942189 20942220 hobo 7 1469 3.5 5.0 4.2 1.3 1499 chrX 20940721 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942220 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-714 1909 chrX 21022262 21022275 chrX 21022344 21022357 5 82 8.5 5.0 6.8 0.6 95 chrX 21022262 intergenic not near genes chrX 21022310 intergenic not near genes chrX 21022357 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-714 1910 chrX 21086130 21086145 chrX 21087159 21087174 jockey 6 1029 2.0 2.5 2.2 1.9 1044 chrX 21086130 intergenic not near genes chrX 21086652 intergenic not near genes chrX 21087174 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-714 1911 chrX 21088047 21088072 chrX 21088179 21088203 5 129 1.5 1.5 1.5 2.0 156 chrX 21088047 intergenic not near genes chrX 21088125 intergenic not near genes chrX 21088203 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-714 1912 chrX 21089147 21089160 chrX 21089240 21089254 5 94 2.0 0.5 1.2 2.3 107 chrX 21089147 intergenic not near genes chrX 21089200 intergenic not near genes chrX 21089254 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-714 1913 chrX 21264729 21264762 chrX 21264805 21264838 10 76 3.0 2.0 2.5 2.9 109 chrX 21264729 intron CG32521 - chrX 21264784 intron CG32521 - chrX 21264838 intron CG32521 - chrX_10_21260001 chrX_21260001 RAL-714 1914 chrX 21404255 21404288 chrX 21404372 21404404 5 117 0.5 0.5 0.5 3.3 149 chrX 21404255 intergenic not near genes chrX 21404330 intergenic not near genes chrX 21404404 intergenic not near genes chrX_5_21400001 chrX_21400001 RAL-714 1915 chrX 21408103 21408112 chrX 21408179 21408188 4 76 3.5 1.5 2.5 1.1 85 chrX 21408103 intergenic not near genes chrX 21408146 intergenic not near genes chrX 21408188 intergenic not near genes chrX_4_21405001 chrX_21405001 RAL-714 1916 chrX 21419708 21419735 chrX 21419797 21419823 10 87 1.0 1.0 1.0 5.0 115 chrX 21419708 intergenic not near genes chrX 21419766 intergenic not near genes chrX 21419823 intergenic not near genes chrX_10_21415001 chrX_21415001 RAL-714 1917 chrX 21455214 21455223 chrX 21455392 21455399 4 178 1.5 0.0 0.8 2.2 185 chrX 21455214 intron CG42343 - chrX 21455306 intron CG42343 - chrX 21455399 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-714 1918 chrX 21458693 21458725 chrX 21464129 21464161 Ivk 8 5436 0.0 1.0 0.5 5.3 5468 chrX 21458693 intergenic not near genes chrX 21461427 intergenic not near genes chrX 21464161 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-714 1919 chrX 21565413 21565433 chrX 21565491 21565511 4 78 3.0 1.0 2.0 1.3 98 chrX 21565413 intergenic not near genes chrX 21565462 intergenic not near genes chrX 21565511 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-714 1920 chrX 21605095 21605122 chrX 21605178 21605205 4 83 1.0 1.5 1.2 1.8 110 chrX 21605095 intron CG14476 - chrX 21605150 intron CG14476 - chrX 21605205 5` UTR CG14476 - chrX_4_21605001 chrX_21605001 RAL-714 1921 chrX 21668256 21668285 chrX 21668341 21668370 4 85 1.5 0.5 1.0 2.0 114 chrX 21668256 intergenic not near genes chrX 21668313 intergenic not near genes chrX 21668370 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-714 1922 chrX 22448277 22448286 chrX 22448416 22448425 5 139 2.0 3.0 2.5 1.4 148 chrX 22448277 intron CG14615 - chrX 22448351 intron CG14615 - chrX 22448425 intron CG14615 - chrX_5_22445001 chrX_22445001 RAL-714 1923 chrX 22478887 22478897 chrX 22479019 22479030 6 133 0.0 2.5 1.2 2.7 143 chrX 22478887 intron CG12576 - chrX 22478958 intron CG12576 - chrX 22479030 intron CG12576 - chrX_6_22475001 chrX_22475001 RAL-714 1924 chrX 22522645 22522653 chrX 22525465 22525473 NOF 6 2819 3.5 0.0 1.8 2.1 2828 chrX 22522645 intron CG17600 + chrX 22524059 intron CG17600 + chrX 22525473 intron CG17600 + chrX_6_22520001 chrX_22520001 RAL-714 1925 chrX 22538970 22538990 chrX 22539149 22539168 7 179 0.5 0.0 0.2 5.8 198 chrX 22538970 intron,intron CG17600 +,CG17598 - chrX 22539069 intron,intron CG17600 +,CG17598 - chrX 22539168 intron,intron CG17600 +,CG17598 - chrX_7_22535001 chrX_22535001 RAL-714 1926 chrX 22658513 22658537 chrX 22658617 22658641 4 104 1.0 1.5 1.2 1.8 128 chrX 22658513 intron CR44997 + chrX 22658577 intron CR44997 + chrX 22658641 intron CR44997 + chrX_4_22655001 chrX_22655001 RAL-714 1927 chrX 22697496 22697519 chrX 22701793 22701816 Juan 7 4297 3.0 2.5 2.8 1.8 4320 chrX 22697496 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701816 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-714 1928 chrX 22771506 22771534 chrX 22774797 22774824 297 7 3290 2.0 5.0 3.5 1.6 3318 chrX 22771506 intron CR44997 + chrX 22773165 intron CR44997 + chrX 22774824 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-714 1929 chrX 22867980 22868007 chrX 22868093 22868121 10 114 1.5 0.0 0.8 5.6 141 chrX 22867980 exon CG42346 + chrX 22868050 intron CG42346 + chrX 22868121 intron CG42346 + chrX_10_22865001 chrX_22865001 RAL-714 1930 chrX 22870886 22870897 chrX 22870960 22870988 6 88 2.0 1.0 1.5 2.4 102 chrX 22870886 intron,3` UTR CG42346 +,CR43656 - chrX 22870937 intron,3` UTR CG42346 +,CR43656 - chrX 22870988 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-714 1931 chrX 22996309 22996327 chrX 23003543 23003561 roo 6 7234 1.5 2.5 2.0 2.0 7252 chrX 22996309 intron,intron stnA -,stnB - chrX 22999935 intron,intron stnA -,stnB - chrX 23003561 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-714 1932 chrY 519153 519158 chrY 519238 519239 4 84 2.0 3.5 2.8 1.1 86 chrY 519153 intron kl-3 + chrY 519196 intron kl-3 + chrY 519239 intron kl-3 + chrY_4_515001 chrY_515001 RAL-714 1933 chrY 975792 975819 chrY 975872 975926 12 89 134.0 152.0 143.0 0.1 134 chrY 975792 intergenic not near genes chrY 975859 intergenic not near genes chrY 975926 intergenic not near genes chrY_12_975001 chrY_975001 RAL-714