SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
3	chr2L	47462	47488	chr2L	52567	52593	jockey	9	5105	1.5	6.5	4.0	1.8	5131	chr2L	47462	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52593	intron	Cda5 -	chr2L_9_50001	chr2L_50001	RAL-712
14	chr2L	347888	347916	chr2L	355388	355416	blood	5	7500	2.0	2.0	2.0	1.7	7528	chr2L	347888	3` UTR	Plc21C +	chr2L	351652	intron	Plc21C +	chr2L	355416	3` UTR	Plc21C +	chr2L_5_350001	chr2L_350001	RAL-712
18	chr2L	686919	686948	chr2L	695958	695988	roo	6	9039	2.5	3.0	2.8	1.6	9069	chr2L	686919	intron	ds -	chr2L	691454	intron	ds -	chr2L	695988	intron	ds -	chr2L_6_690001	chr2L_690001	RAL-712
19	chr2L	770465	770490	chr2L	772246	772271	Bari1	8	1780	2.0	2.5	2.2	2.5	1806	chr2L	770465	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772271	intergenic	CR44614 +	chr2L_8_770001	chr2L_770001	RAL-712
23	chr2L	976881	976903	chr2L	984517	984536	roo	7	7636	1.0	1.5	1.2	3.2	7655	chr2L	976881	intergenic	not near genes	chr2L	980708	intergenic	not near genes	chr2L	984536	intergenic	not near genes	chr2L_7_980001	chr2L_980001	RAL-712
25	chr2L	1220128	1220160	chr2L	1227594	1227626	blood	12	7466	1.5	3.0	2.2	3.8	7498	chr2L	1220128	intron	CG42329 +	chr2L	1223877	intron	CG42329 +	chr2L	1227626	intron	CG42329 +	chr2L_12_1220001	chr2L_1220001	RAL-712
27	chr2L	1570685	1570717	chr2L	1573556	1573589	F-element	6	2872	2.5	1.0	1.8	2.1	2904	chr2L	1570685	intron	haf +	chr2L	1572137	intron	haf +	chr2L	1573589	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-712
29	chr2L	1711363	1711383	chr2L	1711687	1711707	mdg3	4	324	3.0	4.5	3.8	0.8	344	chr2L	1711363	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711707	3` UTR	frtz -	chr2L_4_1710001	chr2L_1710001	RAL-712
39	chr2L	2100377	2100397	chr2L	2109528	2109548	roo	8	9150	5.0	2.5	3.8	1.7	9171	chr2L	2100377	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109548	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	RAL-712
42	chr2L	2294046	2294071	chr2L	2299247	2299274	copia	9	5204	3.0	4.0	3.5	2.0	5228	chr2L	2294046	intergenic	not near genes	chr2L	2296660	intergenic	not near genes	chr2L	2299274	intergenic	not near genes	chr2L_9_2295001	chr2L_2295001	RAL-712
48	chr2L	2565556	2565563	chr2L	2571629	2571636	297	5	6073	3.0	2.0	2.5	1.4	6080	chr2L	2565556	exon	Cyp309a2 -	chr2L	2568596	intron	Cyp309a2 -	chr2L	2571636	intron	Cyp309a2 -	chr2L_5_2565001	chr2L_2565001	RAL-712
50	chr2L	2661213	2661231	chr2L	2663051	2663069	I-element	6	1838	1.0	3.0	2.0	2.0	1856	chr2L	2661213	intergenic	not near genes	chr2L	2662141	intergenic	not near genes	chr2L	2663069	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	RAL-712
56	chr2L	3073029	3073062	chr2L	3078232	3078265	copia	12	5203	2.0	3.0	2.5	3.4	5236	chr2L	3073029	intron	toc -	chr2L	3075647	intron	toc -	chr2L	3078265	intron	toc -	chr2L_12_3075001	chr2L_3075001	RAL-712
58	chr2L	3202748	3202772	chr2L	3210177	3210201	mdg1	7	7429	1.5	4.0	2.8	1.8	7453	chr2L	3202748	intergenic	not near genes	chr2L	3206474	intergenic	not near genes	chr2L	3210201	intergenic	CR45336 +	chr2L_7_3205001	chr2L_3205001	RAL-712
59	chr2L	3251499	3251520	chr2L	3259064	3259085	springer	8	7565	2.0	2.0	2.0	2.7	7586	chr2L	3251499	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259085	intergenic	not near genes	chr2L_8_3255001	chr2L_3255001	RAL-712
63	chr2L	3388607	3388625	chr2L	3388848	3388866	pogo	4	241	3.5	1.0	2.2	1.2	259	chr2L	3388607	intergenic	CG42460 -	chr2L	3388736	intergenic	CG42460 -	chr2L	3388866	intergenic	CG42460 -,CR44791 +	chr2L_4_3385001	chr2L_3385001	RAL-712
69	chr2L	3649791	3649807	chr2L	3654990	3655009	copia	4	5201	0.0	0.0	0.0	4.0	5218	chr2L	3649791	intron	for -	chr2L	3652400	intron	for -	chr2L	3655009	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-712
74	chr2L	4066043	4066064	chr2L	4068868	4068889	Juan	4	2825	2.5	2.5	2.5	1.1	2846	chr2L	4066043	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068889	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-712
77	chr2L	4181292	4181305	chr2L	4183924	4183936	Burdock	7	2632	2.5	9.0	5.8	1.0	2644	chr2L	4181292	intergenic	not near genes	chr2L	4182614	intergenic	not near genes	chr2L	4183936	intergenic	not near genes	chr2L_7_4180001	chr2L_4180001	RAL-712
80	chr2L	4601702	4601732	chr2L	4609143	4609173	mdg1	10	7441	4.0	1.0	2.5	2.9	7471	chr2L	4601702	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609173	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-712
92	chr2L	4918166	4918196	chr2L	4923239	4923269	jockey	9	5073	1.5	1.5	1.5	3.6	5103	chr2L	4918166	intron	hoe1 -	chr2L	4920718	intron	hoe1 -	chr2L	4923269	intron	hoe1 -	chr2L_9_4920001	chr2L_4920001	RAL-712
93	chr2L	4953515	4953532	chr2L	4953756	4953773	pogo	4	241	3.0	0.5	1.8	1.4	258	chr2L	4953515	intergenic	Jon25Bii -	chr2L	4953644	intergenic	not near genes	chr2L	4953773	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-712
108	chr2L	5827706	5827735	chr2L	5836714	5836743	roo	6	9008	3.0	2.0	2.5	1.7	9037	chr2L	5827706	intron	TrissinR +	chr2L	5832224	intron	TrissinR +	chr2L	5836743	intron	TrissinR +	chr2L_6_5830001	chr2L_5830001	RAL-712
117	chr2L	6363153	6363183	chr2L	6366077	6366109	Burdock	10	2925	3.5	2.0	2.8	2.6	2956	chr2L	6363153	intergenic	not near genes	chr2L	6364631	intergenic	not near genes	chr2L	6366109	intergenic	not near genes	chr2L_10_6360001	chr2L_6360001	RAL-712
118	chr2L	6426853	6426881	chr2L	6445113	6445141	roo	8	18260	6.0	4.5	5.2	1.3	18288	chr2L	6426853	3` UTR	CG9527 -	chr2L	6435997	intron	CG9527 -	chr2L	6445141	exon	CG9527 -	chr2L_8_6435001	chr2L_6435001	RAL-712
123	chr2L	6876786	6876804	chr2L	6882977	6882994	diver	5	6191	2.5	2.5	2.5	1.4	6208	chr2L	6876786	intron	Nlg2 +	chr2L	6879890	intron	Nlg2 +	chr2L	6882994	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-712
129	chr2L	7343324	7343358	chr2L	7350440	7350473	roo	7	7115	1.0	2.5	1.8	2.5	7149	chr2L	7343324	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350473	intron	Wnt6 +	chr2L_7_7345001	chr2L_7345001	RAL-712
139	chr2L	7959040	7959062	chr2L	7960451	7960473	pogo	7	1411	3.5	0.0	1.8	2.5	1433	chr2L	7959040	intron	Snoo -	chr2L	7959756	intron	Snoo -	chr2L	7960473	intron	Snoo -	chr2L_7_7955001	chr2L_7955001	RAL-712
142	chr2L	8013614	8013634	chr2L	8018818	8018838	copia	7	5204	3.5	0.0	1.8	2.5	5224	chr2L	8013614	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_7_8015001	chr2L_8015001	RAL-712
149	chr2L	8452419	8452446	chr2L	8461590	8461616	roo	9	9171	2.0	2.0	2.0	3.0	9197	chr2L	8452419	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461616	intron	fu12 -	chr2L_9_8455001	chr2L_8455001	RAL-712
153	chr2L	8594463	8594498	chr2L	8601517	8601552	297	4	7054	1.0	0.5	0.8	2.2	7089	chr2L	8594463	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601552	intron	Sema-1a +	chr2L_4_8595001	chr2L_8595001	RAL-712
157	chr2L	8723117	8723146	chr2L	8731494	8731523	Tirant	9	8377	2.0	4.0	3.0	2.2	8406	chr2L	8723117	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731523	intron	raw -	chr2L_9_8725001	chr2L_8725001	RAL-712
163	chr2L	9000280	9000304	chr2L	9007789	9007814	roo	6	7510	3.0	2.0	2.5	1.7	7534	chr2L	9000280	intergenic	Try29F +	chr2L	9004047	intergenic	not near genes	chr2L	9007814	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-712
174	chr2L	9393497	9393523	chr2L	9396464	9396490	jockey	8	2967	0.0	3.5	1.8	2.9	2993	chr2L	9393497	intron	Shawl -	chr2L	9394994	intron	Shawl -	chr2L	9396490	intron	Shawl -	chr2L_8_9390001	chr2L_9390001	RAL-712
183	chr2L	9973727	9973759	chr2L	9980844	9980878	HMS-Beagle	13	7118	3.5	1.0	2.2	4.1	7151	chr2L	9973727	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980878	intergenic	not near genes	chr2L_13_9975001	chr2L_9975001	RAL-712
193	chr2L	10592847	10592865	chr2L	10600509	10600527	opus	4	7662	1.0	2.0	1.5	1.6	7680	chr2L	10592847	intron	Trim9 +	chr2L	10596687	intron	Trim9 +	chr2L	10600527	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-712
198	chr2L	10862852	10862876	chr2L	10864466	10864490	Rt1c	8	1614	1.0	5.0	3.0	2.0	1638	chr2L	10862852	3` UTR	CR43807 -	chr2L	10863671	intron	CR43807 -	chr2L	10864490	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	RAL-712
199	chr2L	10946953	10946977	chr2L	10956168	10956192	roo	6	9215	6.0	10.0	8.0	0.7	9239	chr2L	10946953	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_6_10950001	chr2L_10950001	RAL-712
207	chr2L	11563640	11563654	chr2L	11568843	11568858	copia	7	5204	2.5	3.5	3.0	1.8	5218	chr2L	11563640	intergenic	not near genes	chr2L	11566249	intergenic	not near genes	chr2L	11568858	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-712
210	chr2L	11713508	11713533	chr2L	11720976	11721001	blood	5	7468	3.5	4.0	3.8	1.0	7493	chr2L	11713508	intergenic	not near genes	chr2L	11717254	intergenic	not near genes	chr2L	11721001	intergenic	CR44143 +	chr2L_5_11715001	chr2L_11715001	RAL-712
221	chr2L	12558325	12558353	chr2L	12565454	12565482	HMS-Beagle	12	7129	2.0	5.0	3.5	2.7	7157	chr2L	12558325	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_12_12560001	chr2L_12560001	RAL-712
223	chr2L	12731056	12731090	chr2L	12735823	12735857	F-element	9	4767	3.5	2.0	2.8	2.4	4801	chr2L	12731056	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_9_12730001	chr2L_12730001	RAL-712
225	chr2L	12739177	12739192	chr2L	12743958	12743973	Doc	6	4781	3.0	2.0	2.5	1.7	4796	chr2L	12739177	exon	MRP +	chr2L	12741575	intron	MRP +	chr2L	12743973	intron	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-712
226	chr2L	12791605	12791633	chr2L	12795280	12795308	F-element	5	3675	4.5	1.0	2.8	1.3	3703	chr2L	12791605	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795308	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	RAL-712
227	chr2L	12861693	12861721	chr2L	12863160	12863182	hobo	6	1466	3.5	2.5	3.0	1.5	1489	chr2L	12861693	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_6_12860001	chr2L_12860001	RAL-712
228	chr2L	12894029	12894039	chr2L	12895493	12895506	hobo	4	1466	5.0	7.0	6.0	0.6	1477	chr2L	12894029	intergenic	not near genes	chr2L	12894768	intergenic	not near genes	chr2L	12895506	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	RAL-712
229	chr2L	12933852	12933876	chr2L	12941318	12941339	blood	7	7466	5.0	3.0	4.0	1.4	7487	chr2L	12933852	intergenic	not near genes	chr2L	12937596	intergenic	not near genes	chr2L	12941339	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	RAL-712
230	chr2L	13036247	13036272	chr2L	13036489	13036514	X-element	5	242	1.0	4.0	2.5	1.4	267	chr2L	13036247	intron	CG9932 -	chr2L	13036380	intron	CG9932 -	chr2L	13036514	intron	CG9932 -	chr2L_5_13035001	chr2L_13035001	RAL-712
237	chr2L	13761812	13761835	chr2L	13762923	13762946	Doc	8	1111	2.0	4.0	3.0	2.0	1134	chr2L	13761812	intron	TM9SF4 +	chr2L	13762379	intron	TM9SF4 +	chr2L	13762946	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	RAL-712
238	chr2L	13853085	13853118	chr2L	13862234	13862267	roo	10	9149	0.5	2.5	1.5	4.0	9182	chr2L	13853085	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862267	intron	CenG1A +	chr2L_10_13855001	chr2L_13855001	RAL-712
248	chr2L	14642571	14642600	chr2L	14651734	14651763	roo	8	9163	2.0	1.5	1.8	2.9	9192	chr2L	14642571	intron	osp -	chr2L	14647167	intron	osp -	chr2L	14651763	intron	osp -	chr2L_8_14645001	chr2L_14645001	RAL-712
252	chr2L	14803879	14803906	chr2L	14809081	14809109	copia	13	5203	4.0	1.0	2.5	3.7	5230	chr2L	14803879	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809109	intergenic	not near genes	chr2L_13_14805001	chr2L_14805001	RAL-712
260	chr2L	15446049	15446083	chr2L	15453518	15453551	blood	10	7468	2.5	2.5	2.5	2.9	7502	chr2L	15446049	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453551	intergenic	not near genes	chr2L_10_15445001	chr2L_15445001	RAL-712
268	chr2L	15956024	15956059	chr2L	15957491	15957526	hobo	11	1466	6.5	2.0	4.2	2.1	1502	chr2L	15956024	intron	beat-Ib -	chr2L	15956775	intron	beat-Ib -	chr2L	15957526	intron	beat-Ib -	chr2L_11_15955001	chr2L_15955001	RAL-712
272	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	11	145889	10.5	12.0	11.2	0.9	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	RAL-712
275	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	10.5	12.0	11.2	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-712
278	chr2L	16280252	16280285	chr2L	16281423	16281456	1360	12	1171	4.0	3.0	3.5	2.7	1204	chr2L	16280252	intron	crp -	chr2L	16280854	intron	crp -	chr2L	16281456	intron	crp -	chr2L_12_16280001	chr2L_16280001	RAL-712
291	chr2L	17167570	17167585	chr2L	17167811	17167826	pogo	5	241	1.0	1.0	1.0	2.5	256	chr2L	17167570	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167826	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17165001	chr2L_17165001	RAL-712
292	chr2L	17199159	17199189	chr2L	17200626	17200656	hobo	7	1467	3.5	1.5	2.5	2.0	1497	chr2L	17199159	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200656	intron	beat-IIIc -	chr2L_7_17195001	chr2L_17195001	RAL-712
295	chr2L	17273189	17273222	chr2L	17277972	17278005	F-element	4	4783	3.5	1.5	2.5	1.1	4816	chr2L	17273189	intergenic	not near genes	chr2L	17275597	intergenic	not near genes	chr2L	17278005	intergenic	not near genes	chr2L_4_17275001	chr2L_17275001	RAL-712
298	chr2L	17432014	17432047	chr2L	17432121	17432154	1360	5	107	0.0	1.0	0.5	3.3	140	chr2L	17432014	intron	Dif -	chr2L	17432084	intron	Dif -	chr2L	17432154	intron	Dif -	chr2L_5_17430001	chr2L_17430001	RAL-712
302	chr2L	17911964	17911989	chr2L	17914142	17914166	pogo	4	2175	4.0	4.5	4.2	0.8	2202	chr2L	17911964	intergenic	not near genes	chr2L	17913065	intergenic	not near genes	chr2L	17914166	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-712
303	chr2L	17951945	17951978	chr2L	17953411	17953445	hobo	9	1467	1.0	1.5	1.2	4.1	1500	chr2L	17951945	intergenic	CR44398 -,CR44397 -	chr2L	17952695	intergenic	not near genes	chr2L	17953445	intergenic	not near genes	chr2L_9_17950001	chr2L_17950001	RAL-712
304	chr2L	18051877	18051907	chr2L	18061024	18061054	roo	6	9147	2.5	1.0	1.8	2.1	9177	chr2L	18051877	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-712
312	chr2L	18408024	18408054	chr2L	18412807	18412838	Doc	5	4784	0.5	0.0	0.2	4.2	4814	chr2L	18408024	intergenic	not near genes	chr2L	18410431	intergenic	not near genes	chr2L	18412838	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	RAL-712
326	chr2L	19147374	19147389	chr2L	19154409	19154424	297	4	7035	5.0	1.5	3.2	1.0	7050	chr2L	19147374	intron	brat +	chr2L	19150899	intron	brat +	chr2L	19154424	intron	brat +	chr2L_4_19150001	chr2L_19150001	RAL-712
329	chr2L	19345014	19345040	chr2L	19357223	19357249	blood	9	12209	3.0	4.5	3.8	1.9	12235	chr2L	19345014	intron	dnt -	chr2L	19351132	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_9_19350001	chr2L_19350001	RAL-712
338	chr2L	19620093	19620132	chr2L	19621081	19621119	jockey	16	989	6.0	4.0	5.0	2.7	1026	chr2L	19620093	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621119	intron	Lar +	chr2L_16_19620001	chr2L_19620001	RAL-712
339	chr2L	19652573	19652594	chr2L	19674004	19674025	opus	4	21432	3.5	4.0	3.8	0.8	21452	chr2L	19652573	intron	Lar +	chr2L	19663299	intron	Lar +	chr2L	19674025	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-712
340	chr2L	19703537	19703561	chr2L	19712672	19712697	roo	7	9136	7.0	3.5	5.2	1.1	9160	chr2L	19703537	intron	Lar +	chr2L	19708117	intron	Lar +	chr2L	19712697	intron	Lar +	chr2L_7_19705001	chr2L_19705001	RAL-712
341	chr2L	19762811	19762839	chr2L	19763053	19763081	pogo	8	242	2.5	1.0	1.8	2.9	270	chr2L	19762811	5` UTR	fbp -	chr2L	19762946	intron	fbp -	chr2L	19763081	intron	fbp -	chr2L_8_19760001	chr2L_19760001	RAL-712
346	chr2L	20005874	20005895	chr2L	20010950	20010971	flea	6	5075	3.0	3.0	3.0	1.5	5097	chr2L	20005874	intron	CG43861 -	chr2L	20008422	intron	CG43861 -	chr2L	20010971	intron	CG43861 -	chr2L_6_20005001	chr2L_20005001	RAL-712
351	chr2L	20272111	20272143	chr2L	20282822	20282854	copia	7	10711	2.5	2.5	2.5	2.0	10743	chr2L	20272111	intergenic	not near genes	chr2L	20277482	intergenic	not near genes	chr2L	20282854	intergenic	not near genes	chr2L_7_20275001	chr2L_20275001	RAL-712
356	chr2L	20568663	20568687	chr2L	20569052	20569077	X-element	5	390	2.5	2.5	2.5	1.4	414	chr2L	20568663	intron	CR45347 +	chr2L	20568870	intron	CR45347 +	chr2L	20569077	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	RAL-712
357	chr2L	20576221	20576237	chr2L	20583689	20583704	blood	7	7467	4.0	1.0	2.5	2.0	7483	chr2L	20576221	intergenic	not near genes	chr2L	20579962	intergenic	not near genes	chr2L	20583704	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-712
369	chr2L	20901470	20901489	chr2L	20902634	20902653	1360	8	1164	0.0	0.5	0.2	6.7	1183	chr2L	20901470	intron,intron	CG43739 -,sky -	chr2L	20902062	intron,intron	CG43739 -,sky -	chr2L	20902653	intron,intron	CG43739 -,sky -	chr2L_8_20900001	chr2L_20900001	RAL-712
370	chr2L	20976641	20976678	chr2L	20981456	20981492	X-element	5	4815	0.0	2.5	1.2	2.3	4851	chr2L	20976641	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981492	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-712
373	chr2L	21041139	21041168	chr2L	21049399	21049429	Tirant	5	8261	1.0	5.0	3.0	1.2	8290	chr2L	21041139	intron	CG42238 -	chr2L	21045284	intron	CG42238 -	chr2L	21049429	intron	CG42238 -	chr2L_5_21045001	chr2L_21045001	RAL-712
378	chr2L	21597033	21597056	chr2L	21604777	21604800	roo	4	7744	2.5	4.5	3.5	0.9	7767	chr2L	21597033	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604800	intergenic	not near genes	chr2L_4_21600001	chr2L_21600001	RAL-712
379	chr2L	21691831	21691850	chr2L	21698301	21698320	Burdock	5	6470	1.0	0.0	0.5	3.3	6489	chr2L	21691831	intron	CG31619 +	chr2L	21695076	intron	CG31619 +	chr2L	21698320	intron	CG31619 +	chr2L_5_21695001	chr2L_21695001	RAL-712
384	chr2L	21981686	21981715	chr2L	21990851	21990879	roo	8	9165	3.0	2.0	2.5	2.3	9193	chr2L	21981686	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990879	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-712
385	chr2L	22776427	22776452	chr2L	22778216	22778241	S-element	6	1789	4.5	4.5	4.5	1.1	1814	chr2L	22776427	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_6_22775001	chr2L_22775001	RAL-712
386	chr2R	529323	529352	chr2R	537948	537977	Max-element	9	8625	2.5	1.0	1.8	3.2	8654	chr2R	529323	intron	CG40378 +	chr2R	533650	intron	CG40378 +	chr2R	537977	intron	CG40378 +	chr2R_9_530001	chr2R_530001	RAL-712
388	chr2R	2498988	2499009	chr2R	2508135	2508156	roo	8	9147	2.0	3.5	2.8	2.1	9168	chr2R	2498988	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508156	intron	MFS17 -	chr2R_8_2500001	chr2R_2500001	RAL-712
394	chr2R	4622956	4622988	chr2R	4624115	4624147	1360	7	1159	2.0	4.0	3.0	1.8	1191	chr2R	4622956	intergenic	CR44101 -	chr2R	4623552	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	RAL-712
395	chr2R	4750340	4750377	chr2R	4751496	4751534	1360	5	1156	0.0	1.5	0.8	2.8	1194	chr2R	4750340	intron	conu +	chr2R	4750937	intron	conu +	chr2R	4751534	intron	conu +	chr2R_5_4750001	chr2R_4750001	RAL-712
405	chr2R	5417993	5418020	chr2R	5420625	5420652	Burdock	9	2632	2.0	1.5	1.8	3.2	2659	chr2R	5417993	intron	laccase2 +	chr2R	5419322	intron	laccase2 +	chr2R	5420652	intron	laccase2 +	chr2R_9_5415001	chr2R_5415001	RAL-712
408	chr2R	5543197	5543218	chr2R	5547281	5547302	invader1	4	4084	0.0	2.5	1.2	1.8	4105	chr2R	5543197	intron	CG30438 +	chr2R	5545250	intron	CG30438 +	chr2R	5547302	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	RAL-712
412	chr2R	5869274	5869306	chr2R	5874350	5874382	flea	12	5076	1.5	2.5	2.0	4.0	5108	chr2R	5869274	intergenic	not near genes	chr2R	5871828	intergenic	not near genes	chr2R	5874382	intergenic	not near genes	chr2R_12_5870001	chr2R_5870001	RAL-712
413	chr2R	5902165	5902187	chr2R	5909724	5909746	17.6	6	7558	2.0	4.0	3.0	1.5	7581	chr2R	5902165	intron	CG43366 +	chr2R	5905956	intron	CG43366 +	chr2R	5909746	intron	CG43366 +	chr2R_6_5905001	chr2R_5905001	RAL-712
416	chr2R	6096728	6096749	chr2R	6101912	6101947	BS	4	5194	3.5	3.5	3.5	0.9	5219	chr2R	6096728	intron	EcR -	chr2R	6099338	intron	EcR -	chr2R	6101947	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-712
428	chr2R	7139946	7139953	chr2R	7141437	7141445	hopper2	4	1492	5.0	6.5	5.8	0.6	1499	chr2R	7139946	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141445	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-712
430	chr2R	7196571	7196601	chr2R	7201346	7201376	F-element	5	4775	3.5	1.0	2.2	1.6	4805	chr2R	7196571	intron	pk +	chr2R	7198974	intron	pk +	chr2R	7201376	intron	pk +	chr2R_5_7195001	chr2R_7195001	RAL-712
431	chr2R	7235829	7235853	chr2R	7240921	7240943	jockey	4	5092	2.0	3.5	2.8	1.1	5114	chr2R	7235829	intergenic	not near genes	chr2R	7238386	intergenic	not near genes	chr2R	7240943	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	RAL-712
435	chr2R	7608416	7608434	chr2R	7613619	7613637	I-element	6	5203	3.0	0.0	1.5	2.4	5221	chr2R	7608416	intron	CG1358 -	chr2R	7611026	intron	CG1358 -	chr2R	7613637	intron	CG1358 -	chr2R_6_7610001	chr2R_7610001	RAL-712
438	chr2R	7869192	7869215	chr2R	7873978	7874001	Doc	6	4786	3.5	2.0	2.8	1.6	4809	chr2R	7869192	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874001	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-712
446	chr2R	8330863	8330883	chr2R	8331349	8331369	roo	4	486	1.0	1.0	1.0	2.0	506	chr2R	8330863	intron	pdm3 +	chr2R	8331116	intron	pdm3 +	chr2R	8331369	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-712
448	chr2R	8398210	8398243	chr2R	8402988	8403024	Doc	6	4780	2.5	4.0	3.2	1.4	4814	chr2R	8398210	intron	CG2121 -	chr2R	8400617	intron	CG2121 -	chr2R	8403024	intron	CG2121 -	chr2R_6_8400001	chr2R_8400001	RAL-712
456	chr2R	8722774	8722794	chr2R	8723015	8723035	pogo	4	240	3.0	2.5	2.8	1.1	261	chr2R	8722774	intron	CG14767 -	chr2R	8722904	intron	CG14767 -	chr2R	8723035	intron	CG14767 -	chr2R_4_8720001	chr2R_8720001	RAL-712
463	chr2R	9151310	9151334	chr2R	9157780	9157804	Burdock	7	6470	2.0	3.5	2.8	1.8	6494	chr2R	9151310	3` UTR	CG30345 +	chr2R	9154557	intergenic	not near genes	chr2R	9157804	intergenic	CG8008 -	chr2R_7_9150001	chr2R_9150001	RAL-712
465	chr2R	9212693	9212721	chr2R	9213179	9213206	roo	8	486	4.5	5.5	5.0	1.3	513	chr2R	9212693	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213206	5` UTR	CR45309 +	chr2R_8_9210001	chr2R_9210001	RAL-712
468	chr2R	9480075	9480109	chr2R	9490606	9490640	roo	5	10531	1.5	2.5	2.0	1.7	10565	chr2R	9480075	intergenic	not near genes	chr2R	9485358	intergenic	not near genes	chr2R	9490640	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-712
470	chr2R	9726612	9726632	chr2R	9734163	9734183	17.6	6	7551	1.0	0.5	0.8	3.3	7571	chr2R	9726612	intron	sqa -	chr2R	9730398	intron	sqa -	chr2R	9734183	intron	sqa -	chr2R_6_9730001	chr2R_9730001	RAL-712
472	chr2R	9871039	9871074	chr2R	9871525	9871560	roo	8	485	3.5	2.0	2.8	2.1	521	chr2R	9871039	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871560	intron,5` UTR	cbx -,CG18446 +	chr2R_8_9870001	chr2R_9870001	RAL-712
474	chr2R	9945438	9945470	chr2R	9945633	9945666	BS	7	195	3.0	0.5	1.8	2.5	228	chr2R	9945438	intron	Mef2 -	chr2R	9945552	intron	Mef2 -	chr2R	9945666	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-712
476	chr2R	10005851	10005877	chr2R	10007016	10007042	1360	8	1165	4.5	3.0	3.8	1.7	1191	chr2R	10005851	intron	Pka-R2 -	chr2R	10006446	intron	Pka-R2 -	chr2R	10007042	intron	Pka-R2 -	chr2R_8_10005001	chr2R_10005001	RAL-712
480	chr2R	10176882	10176911	chr2R	10186049	10186078	roo	7	9167	4.0	1.0	2.5	2.0	9196	chr2R	10176882	intron	KCNQ -	chr2R	10181480	intron	KCNQ -	chr2R	10186078	intron	KCNQ -	chr2R_7_10180001	chr2R_10180001	RAL-712
493	chr2R	10585573	10585588	chr2R	10594156	10594171	Tirant	5	8583	2.0	0.0	1.0	2.5	8598	chr2R	10585573	intron	psq +	chr2R	10589872	intron	psq +	chr2R	10594171	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-712
494	chr2R	10622366	10622381	chr2R	10637131	10637146	mdg1	6	14765	2.5	1.0	1.8	2.1	14780	chr2R	10622366	intron	CG11883 +	chr2R	10629756	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_6_10625001	chr2R_10625001	RAL-712
501	chr2R	10948024	10948061	chr2R	10955575	10955612	17.6	10	7550	1.0	2.5	1.8	3.6	7588	chr2R	10948024	intergenic	not near genes	chr2R	10951818	intergenic	not near genes	chr2R	10955612	intergenic	not near genes	chr2R_10_10950001	chr2R_10950001	RAL-712
504	chr2R	10979658	10979685	chr2R	10980128	10980155	297	5	470	0.0	0.5	0.2	4.2	497	chr2R	10979658	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980155	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	RAL-712
505	chr2R	11009816	11009848	chr2R	11018990	11019021	roo	7	9174	0.0	2.0	1.0	3.5	9205	chr2R	11009816	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019021	intron	luna -	chr2R_7_11010001	chr2R_11010001	RAL-712
506	chr2R	11019878	11019910	chr2R	11024943	11024976	jockey	4	5066	2.0	1.0	1.5	1.6	5098	chr2R	11019878	intron	luna -	chr2R	11022427	intron	luna -	chr2R	11024976	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-712
508	chr2R	11207813	11207849	chr2R	11208006	11208042	BS	8	193	1.0	2.0	1.5	3.2	229	chr2R	11207813	intron	shn +	chr2R	11207928	intron	shn +	chr2R	11208042	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-712
509	chr2R	11415526	11415549	chr2R	11418670	11418696	opus	5	3147	2.5	6.5	4.5	0.9	3170	chr2R	11415526	intron	Drip -	chr2R	11417111	intron	Drip -	chr2R	11418696	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-712
511	chr2R	11472648	11472680	chr2R	11473845	11473876	pogo	6	1196	4.0	2.5	3.2	1.4	1228	chr2R	11472648	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473876	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-712
525	chr2R	12481139	12481166	chr2R	12482942	12482969	roo	9	1803	3.5	3.5	3.5	2.0	1830	chr2R	12481139	exon	Dh44-R2 +	chr2R	12482054	intron	Dh44-R2 +	chr2R	12482969	intron	Dh44-R2 +	chr2R_9_12480001	chr2R_12480001	RAL-712
526	chr2R	12501694	12501726	chr2R	12503856	12503888	Rt1c	5	2161	2.0	7.0	4.5	0.9	2194	chr2R	12501694	intron	fdl -	chr2R	12502791	intron	fdl -	chr2R	12503888	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-712
528	chr2R	12707518	12707532	chr2R	12715884	12715898	roo	5	8366	2.5	2.0	2.2	1.6	8380	chr2R	12707518	intron	CG42663 +	chr2R	12711708	intron	CG42663 +	chr2R	12715898	intron	CG42663 +	chr2R_5_12710001	chr2R_12710001	RAL-712
530	chr2R	12789292	12789322	chr2R	12797655	12797685	roo	7	8362	0.5	2.5	1.5	2.8	8393	chr2R	12789292	intron,3` UTR	sca +,CR45137 -	chr2R	12793488	intron,intron	sca +,CR45137 -	chr2R	12797685	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	RAL-712
531	chr2R	12819456	12819476	chr2R	12824525	12824545	jockey	8	5069	4.0	1.5	2.8	2.1	5089	chr2R	12819456	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824545	intergenic	not near genes	chr2R_8_12820001	chr2R_12820001	RAL-712
536	chr2R	13136834	13136863	chr2R	13141632	13141661	Doc	11	4797	2.5	5.5	4.0	2.2	4827	chr2R	13136834	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141661	intron	Cap-G +	chr2R_11_13135001	chr2R_13135001	RAL-712
550	chr2R	14394227	14394247	chr2R	14399016	14399036	Doc	5	4789	1.0	2.0	1.5	2.0	4809	chr2R	14394227	intergenic	not near genes	chr2R	14396632	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-712
551	chr2R	14467305	14467327	chr2R	14476463	14476485	roo	8	9158	1.0	4.0	2.5	2.3	9180	chr2R	14467305	intergenic	not near genes	chr2R	14471895	intergenic	not near genes	chr2R	14476485	5` UTR	CR44462 +	chr2R_8_14470001	chr2R_14470001	RAL-712
552	chr2R	14497400	14497407	chr2R	14498566	14498573	1360	5	1166	1.0	1.5	1.2	2.3	1173	chr2R	14497400	3` UTR	Cpsf160 -	chr2R	14497986	intron	Cpsf160 -	chr2R	14498573	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	RAL-712
561	chr2R	14889208	14889238	chr2R	14897816	14897843	Max-element	6	8606	5.5	0.5	3.0	1.5	8635	chr2R	14889208	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897843	intergenic	not near genes	chr2R_6_14890001	chr2R_14890001	RAL-712
565	chr2R	15004725	15004764	chr2R	15005054	15005092	jockey	10	329	2.5	1.5	2.0	3.3	367	chr2R	15004725	intergenic	not near genes	chr2R	15004908	intergenic	not near genes	chr2R	15005092	intergenic	not near genes	chr2R_10_15000001	chr2R_15000001	RAL-712
566	chr2R	15015459	15015488	chr2R	15022883	15022911	mdg1	10	7424	3.5	3.5	3.5	2.2	7452	chr2R	15015459	intron	hbs +	chr2R	15019185	intron	hbs +	chr2R	15022911	intron	hbs +	chr2R_10_15015001	chr2R_15015001	RAL-712
568	chr2R	15084977	15085008	chr2R	15092026	15092057	297	5	7049	1.0	1.5	1.2	2.3	7080	chr2R	15084977	intergenic	not near genes	chr2R	15088517	intergenic	not near genes	chr2R	15092057	5` UTR	CR44457 +	chr2R_5_15085001	chr2R_15085001	RAL-712
570	chr2R	15119316	15119345	chr2R	15127797	15127826	Tirant	7	8481	1.0	3.0	2.0	2.3	8510	chr2R	15119316	intron	chn +	chr2R	15123571	intron	chn +	chr2R	15127826	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-712
590	chr2R	16539644	16539662	chr2R	16544853	16544870	copia	5	5209	1.5	0.5	1.0	2.5	5226	chr2R	16539644	intergenic	not near genes	chr2R	16542257	intergenic	not near genes	chr2R	16544870	intergenic	not near genes	chr2R_5_16540001	chr2R_16540001	RAL-712
597	chr2R	17147244	17147270	chr2R	17152273	17152301	jockey	7	5030	2.0	2.5	2.2	2.2	5057	chr2R	17147244	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152301	intergenic	not near genes	chr2R_7_17145001	chr2R_17145001	RAL-712
599	chr2R	17176354	17176383	chr2R	17182544	17182573	diver	11	6190	1.0	0.5	0.8	6.1	6219	chr2R	17176354	intergenic	not near genes	chr2R	17179464	intergenic	not near genes	chr2R	17182573	intergenic	not near genes	chr2R_11_17175001	chr2R_17175001	RAL-712
600	chr2R	17236513	17236531	chr2R	17241716	17241735	copia	7	5204	2.0	2.0	2.0	2.3	5222	chr2R	17236513	intron	mbl +	chr2R	17239124	intron	mbl +	chr2R	17241735	intron	mbl +	chr2R_7_17235001	chr2R_17235001	RAL-712
605	chr2R	17485919	17485932	chr2R	17490689	17490702	F-element	4	4770	5.5	2.0	3.8	0.8	4783	chr2R	17485919	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488310	intron	NT5E-2 +	chr2R	17490702	intron	NT5E-2 +	chr2R_4_17485001	chr2R_17485001	RAL-712
610	chr2R	17784027	17784054	chr2R	17784267	17784295	pogo	11	241	4.5	4.0	4.2	2.1	268	chr2R	17784027	intergenic	mir-31a -	chr2R	17784161	intergenic	mir-31a -	chr2R	17784295	intergenic	mir-31a -	chr2R_11_17780001	chr2R_17780001	RAL-712
613	chr2R	18045667	18045703	chr2R	18046019	18046053	jockey	6	352	2.0	0.5	1.2	2.7	386	chr2R	18045667	intergenic	not near genes	chr2R	18045860	intergenic	not near genes	chr2R	18046053	intergenic	CG5767 -	chr2R_6_18045001	chr2R_18045001	RAL-712
620	chr2R	18575795	18575829	chr2R	18581983	18582017	3S18	8	6188	0.0	4.5	2.2	2.5	6222	chr2R	18575795	intron	GEFmeso -	chr2R	18578906	intron	GEFmeso -	chr2R	18582017	intron	GEFmeso -	chr2R_8_18575001	chr2R_18575001	RAL-712
621	chr2R	18590870	18590901	chr2R	18600021	18600053	roo	6	9151	2.5	5.0	3.8	1.2	9183	chr2R	18590870	intron	GEFmeso -	chr2R	18595462	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-712
640	chr2R	19776594	19776628	chr2R	19779917	19779951	jockey	11	3322	2.0	3.5	2.8	2.9	3357	chr2R	19776594	intergenic	not near genes	chr2R	19778272	intergenic	not near genes	chr2R	19779951	intergenic	not near genes	chr2R_11_19775001	chr2R_19775001	RAL-712
641	chr2R	19914844	19914861	chr2R	19922256	19922273	mdg1	5	7412	1.5	1.5	1.5	2.0	7429	chr2R	19914844	intergenic	not near genes	chr2R	19918558	intergenic	not near genes	chr2R	19922273	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-712
642	chr2R	19957432	19957463	chr2R	19962630	19962665	copia	5	5201	1.0	2.0	1.5	2.0	5233	chr2R	19957432	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962665	intergenic	not near genes	chr2R_5_19960001	chr2R_19960001	RAL-712
650	chr2R	20739444	20739477	chr2R	20744212	20744245	F-element	4	4768	1.0	3.5	2.2	1.2	4801	chr2R	20739444	intron	dpr +	chr2R	20741844	intron	dpr +	chr2R	20744245	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-712
652	chr2R	20783316	20783327	chr2R	20788088	20788099	F-element	4	4772	2.5	5.0	3.8	0.8	4783	chr2R	20783316	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788099	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-712
655	chr2R	21151128	21151146	chr2R	21153761	21153779	opus	5	2632	2.5	3.5	3.0	1.2	2651	chr2R	21151128	intron	CG30389 -	chr2R	21152454	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	RAL-712
662	chr2R	21738281	21738304	chr2R	21747441	21747462	roo	6	9159	2.5	2.0	2.2	1.9	9181	chr2R	21738281	intergenic	not near genes	chr2R	21742872	intergenic	not near genes	chr2R	21747462	intergenic	not near genes	chr2R_6_21740001	chr2R_21740001	RAL-712
663	chr2R	21753089	21753107	chr2R	21753574	21753592	roo	7	485	3.0	2.0	2.5	2.0	503	chr2R	21753089	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753592	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-712
664	chr2R	21809524	21809551	chr2R	21817764	21817790	roo	9	8240	1.5	2.0	1.8	3.2	8266	chr2R	21809524	intergenic	not near genes	chr2R	21813657	intergenic	not near genes	chr2R	21817790	intergenic	not near genes	chr2R_9_21810001	chr2R_21810001	RAL-712
671	chr2R	22360380	22360398	chr2R	22360813	22360831	jockey	5	433	4.5	3.5	4.0	1.0	451	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360831	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-712
674	chr2R	22525746	22525779	chr2R	22529300	22529334	jockey	6	3555	1.5	2.5	2.0	2.0	3588	chr2R	22525746	intron	px -	chr2R	22527540	intron	px -	chr2R	22529334	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-712
681	chr2R	22774961	22775001	chr2R	22775379	22775419	jockey	10	418	3.5	5.5	4.5	1.8	458	chr2R	22774961	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775419	intron	CG42260 -	chr2R_10_22775001	chr2R_22775001	RAL-712
690	chr2R	23529575	23529605	chr2R	23537151	23537181	412	8	7575	4.5	4.5	4.5	1.5	7606	chr2R	23529575	intron	bw -	chr2R	23533378	intron	bw -	chr2R	23537181	exon	bw -	chr2R_8_23530001	chr2R_23530001	RAL-712
699	chr2R	24147072	24147097	chr2R	24154649	24154675	412	11	7577	5.0	2.5	3.8	2.3	7603	chr2R	24147072	intron	Dat +	chr2R	24150874	intron	Dat +	chr2R	24154675	intron	Dat +	chr2R_11_24150001	chr2R_24150001	RAL-712
700	chr2R	24177237	24177264	chr2R	24184721	24184749	412	7	7485	4.0	4.0	4.0	1.4	7512	chr2R	24177237	3` UTR	Nop60B +	chr2R	24180993	intron	Nop60B +	chr2R	24184749	3` UTR	Nop60B +	chr2R_7_24180001	chr2R_24180001	RAL-712
704	chr2R	24353427	24353458	chr2R	24361789	24361820	roo	6	8362	2.0	2.5	2.2	1.9	8393	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361820	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-712
708	chr2R	24647574	24647617	chr2R	24655145	24655174	412	5	7559	0.0	3.0	1.5	2.0	7600	chr2R	24647574	intergenic	not near genes	chr2R	24651374	intergenic	not near genes	chr2R	24655174	intergenic	not near genes	chr2R_5_24650001	chr2R_24650001	RAL-712
710	chr2R	24727890	24727909	chr2R	24735398	24735417	mdg1	8	7508	5.5	7.0	6.2	1.1	7527	chr2R	24727890	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735417	intron	Mid1 -	chr2R_8_24730001	chr2R_24730001	RAL-712
712	chr2R	24763608	24763642	chr2R	24765584	24765617	G2	22	1976	4.0	4.5	4.2	4.2	2009	chr2R	24763608	exon	CG3894 +	chr2R	24764612	intron	CG3894 +	chr2R	24765617	exon	CG3894 +	chr2R_22_24760001	chr2R_24760001	RAL-712
720	chr2R	25141656	25141683	chr2R	25159346	25159373	roo	9	17690	4.5	3.5	4.0	1.8	17717	chr2R	25141656	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159373	intergenic	not near genes	chr2R_9_25150001	chr2R_25150001	RAL-712
728	chr3L	402691	402718	chr3L	409744	409771	297	14	7052	6.5	8.0	7.2	1.7	7080	chr3L	402691	intergenic	not near genes	chr3L	406231	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_14_405001	chr3L_405001	RAL-712
731	chr3L	789916	789929	chr3L	790401	790414	roo	4	485	3.0	1.0	2.0	1.3	498	chr3L	789916	intergenic	not near genes	chr3L	790165	intergenic	not near genes	chr3L	790414	intergenic	not near genes	chr3L_4_790001	chr3L_790001	RAL-712
734	chr3L	858008	858028	chr3L	866488	866509	Tirant	5	8481	2.5	2.0	2.2	1.6	8501	chr3L	858008	intergenic	not near genes	chr3L	862258	intergenic	not near genes	chr3L	866509	5` UTR	CG12502 +	chr3L_5_860001	chr3L_860001	RAL-712
735	chr3L	925175	925202	chr3L	932601	932628	mdg1	8	7426	2.0	2.0	2.0	2.7	7453	chr3L	925175	intron	Glut1 +	chr3L	928902	intron	Glut1 +	chr3L	932628	intron	Glut1 +	chr3L_8_925001	chr3L_925001	RAL-712
737	chr3L	939774	939798	chr3L	940895	940919	jockey	10	1121	5.0	2.0	3.5	2.2	1145	chr3L	939774	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940919	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-712
743	chr3L	1154130	1154160	chr3L	1163280	1163310	roo	9	9150	0.5	1.5	1.0	4.5	9180	chr3L	1154130	intron	bab2 -	chr3L	1158720	intron	bab2 -	chr3L	1163310	intron	bab2 -	chr3L_9_1155001	chr3L_1155001	RAL-712
745	chr3L	1219603	1219620	chr3L	1227335	1227353	412	8	7732	2.5	2.5	2.5	2.3	7750	chr3L	1219603	intron	mwh +	chr3L	1223478	intron	mwh +	chr3L	1227353	intron	mwh +	chr3L_8_1220001	chr3L_1220001	RAL-712
751	chr3L	1506004	1506031	chr3L	1513601	1513628	17.6	8	7597	2.5	2.0	2.2	2.5	7624	chr3L	1506004	intron,intron	Psa +,cue -	chr3L	1509816	intron,intron	Psa +,cue -	chr3L	1513628	intron,intron	Psa +,cue -	chr3L_8_1505001	chr3L_1505001	RAL-712
753	chr3L	1740862	1740886	chr3L	1741107	1741131	pogo	9	245	1.0	2.0	1.5	3.6	269	chr3L	1740862	intron	Gk +	chr3L	1740996	intron	Gk +	chr3L	1741131	intron	Gk +	chr3L_9_1740001	chr3L_1740001	RAL-712
756	chr3L	2108251	2108272	chr3L	2113455	2113476	copia	7	5203	2.0	2.0	2.0	2.3	5225	chr3L	2108251	intron	sls -	chr3L	2110864	intron	sls -	chr3L	2113476	intron	sls -	chr3L_7_2110001	chr3L_2110001	RAL-712
761	chr3L	2447507	2447533	chr3L	2456663	2456689	roo	7	9155	1.0	4.5	2.8	1.8	9182	chr3L	2447507	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456689	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-712
766	chr3L	2927844	2927872	chr3L	2936121	2936147	Tirant	8	8276	2.0	1.5	1.8	2.9	8303	chr3L	2927844	intron	Shab +	chr3L	2931996	intron	Shab +	chr3L	2936147	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-712
768	chr3L	3040337	3040349	chr3L	3042126	3042137	S-element	4	1788	2.0	3.5	2.8	1.1	1800	chr3L	3040337	3` UTR	CG2162 +	chr3L	3041237	intergenic	not near genes	chr3L	3042137	intergenic	Jafrac2 +	chr3L_4_3040001	chr3L_3040001	RAL-712
769	chr3L	3061282	3061312	chr3L	3069865	3069895	Tirant	4	8582	0.5	1.5	1.0	2.0	8613	chr3L	3061282	intron	CG32486 -	chr3L	3065588	intron	CG32486 -	chr3L	3069895	intron	CG32486 -	chr3L_4_3065001	chr3L_3065001	RAL-712
772	chr3L	3281448	3281472	chr3L	3281943	3281967	Doc	13	495	4.5	10.0	7.2	1.6	519	chr3L	3281448	intron	CG12017 +	chr3L	3281708	intron	CG12017 +	chr3L	3281967	intron	CG12017 +	chr3L_13_3280001	chr3L_3280001	RAL-712
775	chr3L	3475074	3475101	chr3L	3475518	3475544	jockey	6	443	0.5	3.0	1.8	2.1	470	chr3L	3475074	intron	CG42324 +	chr3L	3475309	intron	CG42324 +	chr3L	3475544	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-712
779	chr3L	3601300	3601329	chr3L	3606611	3606640	copia	5	5311	5.0	1.0	3.0	1.2	5340	chr3L	3601300	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606640	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-712
796	chr3L	4901126	4901153	chr3L	4907316	4907343	diver	5	6190	1.5	0.0	0.8	2.8	6217	chr3L	4901126	intergenic	CG13704 +	chr3L	4904234	intergenic	not near genes	chr3L	4907343	intergenic	not near genes	chr3L_5_4900001	chr3L_4900001	RAL-712
797	chr3L	5034158	5034183	chr3L	5043310	5043335	roo	4	9152	0.5	1.0	0.8	2.2	9177	chr3L	5034158	intron	Con -	chr3L	5038746	intron	Con -	chr3L	5043335	intron	Con -	chr3L_4_5035001	chr3L_5035001	RAL-712
806	chr3L	5537724	5537755	chr3L	5538059	5538097	jockey	8	341	2.5	2.5	2.5	2.3	373	chr3L	5537724	intergenic	not near genes	chr3L	5537910	intergenic	CG10625 -	chr3L	5538097	intergenic	CG10625 -	chr3L_8_5535001	chr3L_5535001	RAL-712
809	chr3L	5910037	5910063	chr3L	5910278	5910304	pogo	5	241	1.5	4.5	3.0	1.2	267	chr3L	5910037	intron	CG13288 +	chr3L	5910170	intron	CG13288 +	chr3L	5910304	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-712
810	chr3L	5926324	5926349	chr3L	5926514	5926538	BS	10	189	6.0	4.5	5.2	1.6	214	chr3L	5926324	intron	Vap-33B +	chr3L	5926431	intron	Vap-33B +	chr3L	5926538	intron	Vap-33B +	chr3L_10_5925001	chr3L_5925001	RAL-712
813	chr3L	6001678	6001688	chr3L	6004378	6004388	jockey	4	2700	6.5	1.5	4.0	0.8	2710	chr3L	6001678	intron	PVRAP +	chr3L	6003033	intron	PVRAP +	chr3L	6004388	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-712
815	chr3L	6220913	6220945	chr3L	6230065	6230097	roo	12	9152	1.5	4.0	2.8	3.2	9184	chr3L	6220913	5` UTR	pncr008:3L +	chr3L	6225505	intergenic	not near genes	chr3L	6230097	intergenic	not near genes	chr3L_12_6225001	chr3L_6225001	RAL-712
824	chr3L	6855933	6855954	chr3L	6860717	6860738	Doc	6	4784	0.5	2.5	1.5	2.4	4805	chr3L	6855933	intergenic	not near genes	chr3L	6858336	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	RAL-712
825	chr3L	6887517	6887545	chr3L	6895009	6895037	roo	5	7492	2.0	2.5	2.2	1.6	7520	chr3L	6887517	intergenic	not near genes	chr3L	6891277	intergenic	not near genes	chr3L	6895037	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-712
829	chr3L	6994885	6994891	chr3L	6995496	6995502	BS	4	611	0.0	0.5	0.2	3.3	617	chr3L	6994885	intergenic	bin +	chr3L	6995194	intergenic	not near genes	chr3L	6995502	intergenic	not near genes	chr3L_4_6995001	chr3L_6995001	RAL-712
839	chr3L	7377318	7377348	chr3L	7380423	7380453	297	8	3104	2.0	3.0	2.5	2.3	3135	chr3L	7377318	intron	SMSr -	chr3L	7378886	intron	SMSr -	chr3L	7380453	intron	SMSr -	chr3L_8_7375001	chr3L_7375001	RAL-712
848	chr3L	7793713	7793744	chr3L	7800765	7800796	297	9	7052	2.5	2.0	2.2	2.8	7083	chr3L	7793713	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800796	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-712
852	chr3L	7886520	7886547	chr3L	7889038	7889065	Stalker4	8	2518	0.0	0.5	0.2	6.7	2545	chr3L	7886520	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_8_7885001	chr3L_7885001	RAL-712
853	chr3L	7916839	7916862	chr3L	7926010	7926033	roo	4	9171	1.5	2.0	1.8	1.4	9194	chr3L	7916839	3` UTR	syd -	chr3L	7921436	intron	syd -	chr3L	7926033	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	RAL-712
854	chr3L	7985361	7985395	chr3L	7987689	7987723	NOF	4	2328	0.0	2.5	1.2	1.8	2362	chr3L	7985361	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987723	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-712
855	chr3L	8019700	8019737	chr3L	8024112	8024153	NOF	6	4415	1.5	1.0	1.2	2.7	4453	chr3L	8019700	intron	nmo +	chr3L	8021926	intron	nmo +	chr3L	8024153	intron	nmo +	chr3L_6_8020001	chr3L_8020001	RAL-712
867	chr3L	9076931	9076958	chr3L	9084491	9084518	412	8	7560	3.5	3.0	3.2	1.9	7587	chr3L	9076931	exon	Tequila +	chr3L	9080724	intron	Tequila +	chr3L	9084518	exon	Tequila +	chr3L_8_9080001	chr3L_9080001	RAL-712
868	chr3L	9130558	9130579	chr3L	9134318	9134340	412	7	3761	2.0	3.5	2.8	1.8	3782	chr3L	9130558	intergenic	bol -	chr3L	9132449	intergenic	not near genes	chr3L	9134340	intergenic	Dhpr +	chr3L_7_9130001	chr3L_9130001	RAL-712
869	chr3L	9164696	9164732	chr3L	9166163	9166198	hobo	5	1467	1.5	1.5	1.5	2.0	1502	chr3L	9164696	intron	Rdl -	chr3L	9165447	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-712
870	chr3L	9219249	9219270	chr3L	9219920	9219941	jockey	9	671	4.5	3.0	3.8	1.9	692	chr3L	9219249	intergenic	not near genes	chr3L	9219595	intergenic	not near genes	chr3L	9219941	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-712
871	chr3L	9270617	9270650	chr3L	9278372	9278404	roo	6	7754	3.0	0.5	1.8	2.1	7787	chr3L	9270617	intron	GluRIB +	chr3L	9274510	intron	GluRIB +	chr3L	9278404	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	RAL-712
874	chr3L	9443520	9443539	chr3L	9445311	9445329	S-element	5	1791	1.5	2.5	2.0	1.7	1809	chr3L	9443520	intron	CG33926 +	chr3L	9444424	intron	CG33926 +	chr3L	9445329	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-712
876	chr3L	9501704	9501734	chr3L	9502190	9502220	roo	7	486	1.0	3.5	2.2	2.2	516	chr3L	9501704	intron	path -	chr3L	9501962	intron	path -	chr3L	9502220	intron	path -	chr3L_7_9500001	chr3L_9500001	RAL-712
880	chr3L	9526483	9526508	chr3L	9528163	9528188	Doc	8	1680	0.5	2.0	1.2	3.6	1705	chr3L	9526483	intergenic	not near genes	chr3L	9527336	intergenic	not near genes	chr3L	9528188	intergenic	not near genes	chr3L_8_9525001	chr3L_9525001	RAL-712
881	chr3L	9533759	9533785	chr3L	9541315	9541345	412	4	7559	3.5	3.5	3.5	0.9	7586	chr3L	9533759	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541345	intergenic	not near genes	chr3L_4_9535001	chr3L_9535001	RAL-712
883	chr3L	9571901	9571927	chr3L	9572249	9572275	jockey	9	348	3.0	3.5	3.2	2.1	374	chr3L	9571901	intron	CG42673 +	chr3L	9572088	intron	CG42673 +	chr3L	9572275	intron	CG42673 +	chr3L_9_9570001	chr3L_9570001	RAL-712
885	chr3L	9575908	9575935	chr3L	9580986	9581013	jockey	7	5078	2.5	3.0	2.8	1.8	5105	chr3L	9575908	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581013	intron	CG42673 +	chr3L_7_9575001	chr3L_9575001	RAL-712
888	chr3L	9929673	9929701	chr3L	9938451	9938478	roo	5	8778	2.0	5.0	3.5	1.1	8805	chr3L	9929673	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938478	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	RAL-712
896	chr3L	10414943	10414977	chr3L	10417315	10417349	Doc	5	2372	3.0	1.0	2.0	1.7	2406	chr3L	10414943	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417349	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-712
905	chr3L	11105298	11105326	chr3L	11107009	11107037	X-element	4	1711	3.0	3.0	3.0	1.0	1739	chr3L	11105298	intergenic	not near genes	chr3L	11106168	intergenic	not near genes	chr3L	11107037	exon	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-712
908	chr3L	11264465	11264496	chr3L	11271417	11271448	17.6	5	6952	1.5	1.5	1.5	2.0	6983	chr3L	11264465	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271448	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-712
911	chr3L	11329687	11329727	chr3L	11332892	11332932	jockey	4	3205	2.0	1.0	1.5	1.6	3245	chr3L	11329687	intergenic	not near genes	chr3L	11331310	intergenic	not near genes	chr3L	11332932	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-712
915	chr3L	11564794	11564811	chr3L	11572416	11572436	412	6	7623	3.5	3.5	3.5	1.3	7642	chr3L	11564794	exon	CG33267 +	chr3L	11568615	intron	CG33267 +	chr3L	11572436	exon	CG33267 +	chr3L_6_11565001	chr3L_11565001	RAL-712
918	chr3L	11723091	11723114	chr3L	11727886	11727909	Doc	7	4795	2.5	3.5	3.0	1.8	4818	chr3L	11723091	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727909	3` UTR	Bmcp +	chr3L_7_11725001	chr3L_11725001	RAL-712
926	chr3L	11864554	11864585	chr3L	11865849	11865879	pogo	10	1295	3.5	5.0	4.2	1.9	1325	chr3L	11864554	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865879	intron	CG44837 -	chr3L_10_11865001	chr3L_11865001	RAL-712
942	chr3L	12874936	12874963	chr3L	12877228	12877255	jockey	10	2292	2.5	4.0	3.2	2.4	2319	chr3L	12874936	intergenic	not near genes	chr3L	12876096	intergenic	not near genes	chr3L	12877255	intergenic	not near genes	chr3L_10_12875001	chr3L_12875001	RAL-712
944	chr3L	12919278	12919291	chr3L	12924762	12924773	Rt1c	4	5483	4.0	0.5	2.2	1.2	5495	chr3L	12919278	intergenic	not near genes	chr3L	12922026	intergenic	not near genes	chr3L	12924773	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-712
946	chr3L	12957788	12957819	chr3L	12962270	12962301	copia	8	4482	4.5	3.5	4.0	1.6	4513	chr3L	12957788	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962301	intergenic	not near genes	chr3L_8_12960001	chr3L_12960001	RAL-712
956	chr3L	13525158	13525189	chr3L	13532954	13532985	roo	13	7796	3.5	5.5	4.5	2.4	7827	chr3L	13525158	intergenic	not near genes	chr3L	13529072	intergenic	not near genes	chr3L	13532985	intergenic	not near genes	chr3L_13_13525001	chr3L_13525001	RAL-712
961	chr3L	13804548	13804571	chr3L	13822834	13822857	roo	6	18286	2.5	3.5	3.0	1.5	18309	chr3L	13804548	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822857	intergenic	not near genes	chr3L_6_13810001	chr3L_13810001	RAL-712
966	chr3L	14245572	14245592	chr3L	14245665	14245686	1360	9	94	3.5	3.0	3.2	2.1	114	chr3L	14245572	3` UTR	CR44561 -	chr3L	14245629	3` UTR	CR44561 -	chr3L	14245686	3` UTR	CR44561 -	chr3L_9_14245001	chr3L_14245001	RAL-712
967	chr3L	14295996	14296013	chr3L	14296482	14296499	roo	6	486	5.5	6.5	6.0	0.9	503	chr3L	14295996	intron	fz +	chr3L	14296248	intron	fz +	chr3L	14296499	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-712
968	chr3L	14312023	14312052	chr3L	14316835	14316865	X-element	6	4813	2.0	3.5	2.8	1.6	4842	chr3L	14312023	exon	fz +	chr3L	14314444	intron	fz +	chr3L	14316865	intron	fz +	chr3L_6_14310001	chr3L_14310001	RAL-712
973	chr3L	14468453	14468467	chr3L	14473659	14473673	copia	5	5206	2.5	3.5	3.0	1.2	5220	chr3L	14468453	intron	bbg -	chr3L	14471063	intron	bbg -	chr3L	14473673	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-712
974	chr3L	14514693	14514694	chr3L	22908066	22908067	Stalker2	7	8393373	11.0	13.5	12.2	0.5	8393374	chr3L	14514693	intron	bbg -	chr3L	18711380	intergenic	not near genes	chr3L	22908067	intergenic	not near genes	chr3L_7_18710001	chr3L_18710001	RAL-712
981	chr3L	14721188	14721206	chr3L	14723031	14723049	Rt1c	4	1843	3.0	1.5	2.2	1.2	1861	chr3L	14721188	intron	ome +	chr3L	14722118	intron	ome +	chr3L	14723049	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-712
987	chr3L	15085059	15085084	chr3L	15086225	15086250	1360	7	1166	1.0	2.0	1.5	2.8	1191	chr3L	15085059	intron	cp309 -	chr3L	15085654	intron	cp309 -	chr3L	15086250	intron	cp309 -	chr3L_7_15085001	chr3L_15085001	RAL-712
990	chr3L	15295768	15295789	chr3L	15298611	15298632	gypsy5	6	2843	4.0	2.0	3.0	1.5	2864	chr3L	15295768	intergenic	not near genes	chr3L	15297200	intergenic	not near genes	chr3L	15298632	intergenic	Best4 +	chr3L_6_15295001	chr3L_15295001	RAL-712
993	chr3L	15423761	15423781	chr3L	15426605	15426625	opus	4	2844	1.5	1.5	1.5	1.6	2864	chr3L	15423761	intergenic	not near genes	chr3L	15425193	intergenic	not near genes	chr3L	15426625	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-712
1000	chr3L	15899224	15899261	chr3L	15899791	15899828	jockey	10	567	1.0	2.0	1.5	4.0	604	chr3L	15899224	intergenic	pHCl -	chr3L	15899526	intergenic	pHCl -	chr3L	15899828	intergenic	sff -	chr3L_10_15895001	chr3L_15895001	RAL-712
1004	chr3L	16184102	16184137	chr3L	16188921	16188956	X-element	8	4819	1.0	2.0	1.5	3.2	4854	chr3L	16184102	intergenic	not near genes	chr3L	16186529	intergenic	not near genes	chr3L	16188956	intergenic	not near genes	chr3L_8_16185001	chr3L_16185001	RAL-712
1010	chr3L	16443849	16443872	chr3L	16446188	16446212	Doc	11	2340	5.0	2.0	3.5	2.4	2363	chr3L	16443849	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446212	intron,intron	CG33158 +,dsx-c73A -	chr3L_11_16445001	chr3L_16445001	RAL-712
1011	chr3L	16493989	16494012	chr3L	16494506	16494529	jockey	9	517	1.5	3.0	2.2	2.8	540	chr3L	16493989	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494259	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494529	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_9_16490001	chr3L_16490001	RAL-712
1022	chr3L	16945726	16945761	chr3L	16954879	16954914	roo	12	9152	3.5	0.0	1.8	4.3	9188	chr3L	16945726	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954914	5` UTR	Nc73EF +	chr3L_12_16950001	chr3L_16950001	RAL-712
1024	chr3L	17034936	17034967	chr3L	17035124	17035155	G2	6	188	1.0	1.0	1.0	3.0	219	chr3L	17034936	intergenic	not near genes	chr3L	17035046	intergenic	not near genes	chr3L	17035155	intergenic	not near genes	chr3L_6_17035001	chr3L_17035001	RAL-712
1025	chr3L	17085003	17085031	chr3L	17094151	17094180	roo	9	9149	4.5	2.5	3.5	2.0	9177	chr3L	17085003	intron	Rbp6 -	chr3L	17089592	intron	Rbp6 -	chr3L	17094180	intron	Rbp6 -	chr3L_9_17085001	chr3L_17085001	RAL-712
1031	chr3L	17516984	17517010	chr3L	17524542	17524563	412	13	7557	2.0	2.0	2.0	4.3	7579	chr3L	17516984	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524563	3` UTR	CG7564 +	chr3L_13_17520001	chr3L_17520001	RAL-712
1033	chr3L	17730859	17730881	chr3L	17738189	17738210	mdg1	8	7330	2.5	2.0	2.2	2.5	7351	chr3L	17730859	intron	Ccn +	chr3L	17734534	intron	Ccn +	chr3L	17738210	intron	Ccn +	chr3L_8_17730001	chr3L_17730001	RAL-712
1043	chr3L	18506136	18506151	chr3L	18509599	18509613	F-element	5	3463	1.5	1.5	1.5	2.0	3477	chr3L	18506136	intergenic	not near genes	chr3L	18507874	intergenic	not near genes	chr3L	18509613	intergenic	not near genes	chr3L_5_18505001	chr3L_18505001	RAL-712
1044	chr3L	18528625	18528655	chr3L	18537786	18537816	roo	5	9161	1.0	1.5	1.2	2.3	9191	chr3L	18528625	intergenic	not near genes	chr3L	18533220	intergenic	not near genes	chr3L	18537816	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-712
1048	chr3L	18772406	18772433	chr3L	18781087	18781114	roo	7	8681	2.5	2.0	2.2	2.2	8708	chr3L	18772406	intron	ftz-f1 -	chr3L	18776760	intron	ftz-f1 -	chr3L	18781114	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	RAL-712
1049	chr3L	18833783	18833808	chr3L	18834945	18834972	1360	6	1164	2.0	1.5	1.8	2.1	1189	chr3L	18833783	intron	Indy -	chr3L	18834378	intron	Indy -	chr3L	18834972	intron	Indy -	chr3L_6_18830001	chr3L_18830001	RAL-712
1056	chr3L	19008847	19008862	chr3L	19009185	19009200	jockey	10	338	5.0	5.5	5.2	1.6	353	chr3L	19008847	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009200	intron	nkd -	chr3L_10_19005001	chr3L_19005001	RAL-712
1058	chr3L	19115636	19115669	chr3L	19115814	19115846	BS	5	178	4.0	3.5	3.8	1.0	210	chr3L	19115636	intron	CG14082 -	chr3L	19115741	intron	CG14082 -	chr3L	19115846	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RAL-712
1059	chr3L	19117040	19117075	chr3L	19124487	19124522	mdg1	9	7446	2.5	3.0	2.8	2.4	7482	chr3L	19117040	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	RAL-712
1060	chr3L	19208059	19208091	chr3L	19209433	19209465	Doc	6	1374	1.0	3.0	2.0	2.0	1406	chr3L	19208059	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209465	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-712
1073	chr3L	19848508	19848523	chr3L	19857698	19857713	roo	7	9190	2.5	0.5	1.5	2.8	9205	chr3L	19848508	intron	Papss +	chr3L	19853110	intron	Papss +	chr3L	19857713	intron	Papss +	chr3L_7_19850001	chr3L_19850001	RAL-712
1078	chr3L	20113670	20113690	chr3L	20122927	20122947	roo	4	9257	1.5	4.0	2.8	1.1	9277	chr3L	20113670	intergenic	not near genes	chr3L	20118308	intergenic	not near genes	chr3L	20122947	intergenic	not near genes	chr3L_4_20115001	chr3L_20115001	RAL-712
1081	chr3L	20257336	20257356	chr3L	20258456	20258475	pogo	10	1120	1.0	3.0	2.0	3.3	1139	chr3L	20257336	intron	rdgC +	chr3L	20257906	intron	rdgC +	chr3L	20258475	intron	rdgC +	chr3L_10_20255001	chr3L_20255001	RAL-712
1086	chr3L	20476753	20476785	chr3L	20484352	20484384	springer	10	7599	1.0	2.5	1.8	3.6	7631	chr3L	20476753	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_10_20480001	chr3L_20480001	RAL-712
1087	chr3L	20590062	20590095	chr3L	20590601	20590633	412	8	538	2.0	1.5	1.8	2.9	571	chr3L	20590062	intergenic	not near genes	chr3L	20590348	intergenic	not near genes	chr3L	20590633	intergenic	not near genes	chr3L_8_20590001	chr3L_20590001	RAL-712
1089	chr3L	20821295	20821311	chr3L	20824764	20824780	NOF	4	3469	2.0	7.5	4.8	0.7	3485	chr3L	20821295	intron	Pka-R1 +	chr3L	20823038	intron	Pka-R1 +	chr3L	20824780	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	RAL-712
1095	chr3L	21014914	21014940	chr3L	21023395	21023419	Tirant	5	8481	4.5	1.0	2.8	1.3	8505	chr3L	21014914	intron	skd -	chr3L	21019166	intron	skd -	chr3L	21023419	intron	skd -	chr3L_5_21015001	chr3L_21015001	RAL-712
1099	chr3L	21151864	21151894	chr3L	21156948	21156978	flea	9	5084	2.0	3.5	2.8	2.4	5114	chr3L	21151864	intron	Ac78C -	chr3L	21154421	intron	Ac78C -	chr3L	21156978	intron	Ac78C -	chr3L_9_21150001	chr3L_21150001	RAL-712
1103	chr3L	21306153	21306178	chr3L	21315312	21315336	roo	4	9159	3.5	0.5	2.0	1.3	9183	chr3L	21306153	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310744	intron	Pc -	chr3L	21315336	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-712
1104	chr3L	21361730	21361752	chr3L	21362684	21362706	G2	5	954	3.0	2.0	2.5	1.4	976	chr3L	21361730	intergenic	not near genes	chr3L	21362218	intergenic	not near genes	chr3L	21362706	intergenic	not near genes	chr3L_5_21360001	chr3L_21360001	RAL-712
1109	chr3L	21498835	21498861	chr3L	21500471	21500495	1360	8	1636	5.0	3.5	4.2	1.5	1660	chr3L	21498835	intron	Glg1 -	chr3L	21499665	intron	Glg1 -	chr3L	21500495	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	RAL-712
1111	chr3L	21749321	21749330	chr3L	21754481	21754490	Doc	6	5158	4.5	5.5	5.0	1.0	5169	chr3L	21749321	intron	Syn1 -	chr3L	21751906	intron	Syn1 -	chr3L	21754490	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-712
1122	chr3L	22555775	22555798	chr3L	22563244	22563267	blood	5	7470	2.0	0.5	1.2	2.3	7492	chr3L	22555775	intergenic	not near genes	chr3L	22559521	intergenic	not near genes	chr3L	22563267	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-712
1124	chr3L	22577614	22577632	chr3L	22582402	22582420	Doc	5	4788	4.0	6.0	5.0	0.8	4806	chr3L	22577614	intergenic	not near genes	chr3L	22580017	intergenic	not near genes	chr3L	22582420	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-712
1125	chr3L	22617188	22617221	chr3L	22624640	22624672	blood	9	7451	3.0	3.5	3.2	2.1	7484	chr3L	22617188	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624672	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-712
1128	chr3L	22761386	22761419	chr3L	22766820	22766853	Ivk	10	5434	1.5	4.5	3.0	2.5	5467	chr3L	22761386	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_10_22760001	chr3L_22760001	RAL-712
1129	chr3L	22865986	22866011	chr3L	22867119	22867144	Doc	5	1133	1.5	2.0	1.8	1.8	1158	chr3L	22865986	intron	CG33170 +	chr3L	22866565	intron	CG33170 +	chr3L	22867144	intron	CG33170 +	chr3L_5_22865001	chr3L_22865001	RAL-712
1132	chr3L	22989866	22989892	chr3L	22996839	22996865	297	5	6973	1.5	3.0	2.2	1.6	6999	chr3L	22989866	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996865	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	RAL-712
1133	chr3L	23042224	23042258	chr3L	23048977	23049011	gypsy6	7	6753	1.5	1.0	1.2	3.2	6787	chr3L	23042224	intergenic	not near genes	chr3L	23045618	intergenic	not near genes	chr3L	23049011	intergenic	not near genes	chr3L_7_23045001	chr3L_23045001	RAL-712
1136	chr3L	24168786	24168801	chr3L	24176123	24176138	ZAM	6	7336	3.5	2.5	3.0	1.5	7352	chr3L	24168786	intron	Snap25 +	chr3L	24172462	intron	Snap25 +	chr3L	24176138	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	RAL-712
1142	chr3L	25628498	25628528	chr3L	25633268	25633297	F-element	13	4771	1.0	4.0	2.5	3.7	4799	chr3L	25628498	intron	CG41343 -	chr3L	25630898	intron	CG41343 -	chr3L	25633297	intron	CG41343 -	chr3L_13_25630001	chr3L_25630001	RAL-712
1155	chr3R	4206078	4206104	chr3R	4211653	4211679	mdg3	7	5575	2.0	2.5	2.2	2.2	5601	chr3R	4206078	intron	CG14636 -	chr3R	4208878	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_7_4205001	chr3R_4205001	RAL-712
1157	chr3R	4366759	4366778	chr3R	4375142	4375161	roo	5	8383	3.0	2.5	2.8	1.3	8402	chr3R	4366759	3` UTR	CG1090 +	chr3R	4370960	intergenic	not near genes	chr3R	4375161	5` UTR	CR44922 +	chr3R_5_4370001	chr3R_4370001	RAL-712
1158	chr3R	4408414	4408442	chr3R	4412718	4412746	Juan	6	4304	3.0	2.0	2.5	1.7	4332	chr3R	4408414	intron	CG32944 -	chr3R	4410580	intron	CG32944 -	chr3R	4412746	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-712
1160	chr3R	4609546	4609578	chr3R	4610710	4610742	1360	9	1164	2.0	1.0	1.5	3.6	1196	chr3R	4609546	intergenic	not near genes	chr3R	4610144	intergenic	not near genes	chr3R	4610742	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-712
1161	chr3R	4683177	4683209	chr3R	4684936	4684967	S-element	4	1758	2.0	3.5	2.8	1.1	1790	chr3R	4683177	intron	CG43427 +	chr3R	4684072	intron	CG43427 +	chr3R	4684967	intron	CG43427 +	chr3R_4_4680001	chr3R_4680001	RAL-712
1162	chr3R	4753241	4753261	chr3R	4757544	4757564	F-element	6	4301	6.5	8.0	7.2	0.7	4323	chr3R	4753241	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757564	intron,exon	atms +,CG44098 -	chr3R_6_4755001	chr3R_4755001	RAL-712
1163	chr3R	4759718	4759752	chr3R	4761215	4761248	hopper2	8	1497	3.5	3.0	3.2	1.9	1530	chr3R	4759718	intron,intron	atms +,CG44098 -	chr3R	4760483	intron,intron	atms +,CG44098 -	chr3R	4761248	intron,intron	atms +,CG44098 -	chr3R_8_4760001	chr3R_4760001	RAL-712
1166	chr3R	4887489	4887512	chr3R	4894865	4894889	rover	4	7377	1.0	4.0	2.5	1.1	7400	chr3R	4887489	intergenic	not near genes	chr3R	4891189	intergenic	not near genes	chr3R	4894889	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-712
1167	chr3R	5045844	5045861	chr3R	5052946	5052963	HMS-Beagle	7	7102	8.0	1.5	4.8	1.2	7119	chr3R	5045844	intron	CR43635 -	chr3R	5049404	intergenic	not near genes	chr3R	5052963	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-712
1168	chr3R	5067984	5068012	chr3R	5073501	5073527	mdg3	11	5517	1.5	3.0	2.2	3.4	5543	chr3R	5067984	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073527	intergenic	not near genes	chr3R_11_5070001	chr3R_5070001	RAL-712
1172	chr3R	5338396	5338426	chr3R	5343573	5343603	Rt1c	16	5177	6.5	2.5	4.5	2.9	5207	chr3R	5338396	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343603	intron	mtd -	chr3R_16_5340001	chr3R_5340001	RAL-712
1173	chr3R	5445964	5445994	chr3R	5452423	5452454	Burdock	6	6460	0.0	0.5	0.2	5.0	6490	chr3R	5445964	intron	CG14669 +	chr3R	5449209	intron	CG14669 +	chr3R	5452454	intron	CG14669 +	chr3R_6_5445001	chr3R_5445001	RAL-712
1176	chr3R	5746026	5746044	chr3R	5746267	5746285	pogo	6	241	2.0	2.5	2.2	1.9	259	chr3R	5746026	3` UTR	Madm +	chr3R	5746156	3` UTR	Madm +	chr3R	5746285	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-712
1177	chr3R	5747021	5747047	chr3R	5753210	5753238	diver	5	6190	3.0	1.5	2.2	1.6	6217	chr3R	5747021	intergenic	Madm +	chr3R	5750130	intergenic	not near genes	chr3R	5753238	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	RAL-712
1181	chr3R	5809120	5809142	chr3R	5809361	5809383	pogo	7	241	1.0	1.5	1.2	3.2	263	chr3R	5809120	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809383	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	RAL-712
1182	chr3R	5822378	5822413	chr3R	5823545	5823576	1360	12	1167	2.5	3.5	3.0	3.0	1198	chr3R	5822378	3` UTR	CG2023 -	chr3R	5822977	3` UTR	CG2023 -	chr3R	5823576	3` UTR	CG2023 -	chr3R_12_5820001	chr3R_5820001	RAL-712
1184	chr3R	5927563	5927591	chr3R	5927803	5927831	pogo	9	240	2.0	3.5	2.8	2.4	268	chr3R	5927563	intron	CG34113 -	chr3R	5927697	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_9_5925001	chr3R_5925001	RAL-712
1185	chr3R	6015968	6015983	chr3R	6024449	6024463	Tirant	5	8481	2.0	2.0	2.0	1.7	8495	chr3R	6015968	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024463	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-712
1188	chr3R	6158515	6158540	chr3R	6167098	6167122	Tirant	7	8583	1.5	2.0	1.8	2.5	8607	chr3R	6158515	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167122	intergenic	CG1077 +	chr3R_7_6160001	chr3R_6160001	RAL-712
1189	chr3R	6510025	6510042	chr3R	6515106	6515123	jockey	5	5080	5.0	1.0	3.0	1.2	5098	chr3R	6510025	intergenic	not near genes	chr3R	6512574	intergenic	not near genes	chr3R	6515123	intergenic	not near genes	chr3R_5_6510001	chr3R_6510001	RAL-712
1196	chr3R	6737501	6737527	chr3R	6739287	6739314	Doc	4	1786	1.0	2.5	1.8	1.4	1813	chr3R	6737501	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739314	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-712
1213	chr3R	7694587	7694603	chr3R	7713648	7713664	invader3	4	19061	1.0	3.0	2.0	1.3	19077	chr3R	7694587	3` UTR	Nlg1 +	chr3R	7704126	intergenic	not near genes	chr3R	7713664	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-712
1215	chr3R	7729465	7729499	chr3R	7737403	7737437	Stalker2	7	7938	2.0	2.5	2.2	2.2	7972	chr3R	7729465	intergenic	not near genes	chr3R	7733451	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	RAL-712
1216	chr3R	7849656	7849667	chr3R	7850823	7850834	1360	5	1167	1.5	1.5	1.5	2.0	1178	chr3R	7849656	intron	CG34384 +	chr3R	7850245	intron	CG34384 +	chr3R	7850834	intron	CG34384 +	chr3R_5_7850001	chr3R_7850001	RAL-712
1217	chr3R	7973315	7973343	chr3R	7974377	7974405	1360	8	1062	0.5	1.5	1.0	4.0	1090	chr3R	7973315	intergenic	not near genes	chr3R	7973860	intergenic	not near genes	chr3R	7974405	intergenic	CD98hc -	chr3R_8_7970001	chr3R_7970001	RAL-712
1219	chr3R	8094409	8094440	chr3R	8099714	8099745	Transpac	9	5305	3.0	3.5	3.2	2.1	5336	chr3R	8094409	intron	CG7900 +	chr3R	8097077	intron	CG7900 +	chr3R	8099745	intron	CG7900 +	chr3R_9_8095001	chr3R_8095001	RAL-712
1220	chr3R	8101779	8101790	chr3R	8104863	8104874	G2	4	3084	4.5	2.0	3.2	1.0	3095	chr3R	8101779	exon	CG7900 +	chr3R	8103326	intron	CG7900 +	chr3R	8104874	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-712
1222	chr3R	8207567	8207586	chr3R	8208412	8208431	F-element	7	844	2.0	5.0	3.5	1.6	864	chr3R	8207567	intergenic	not near genes	chr3R	8207999	intergenic	not near genes	chr3R	8208431	intergenic	not near genes	chr3R_7_8205001	chr3R_8205001	RAL-712
1227	chr3R	8403009	8403034	chr3R	8412174	8412200	roo	17	9166	5.5	3.5	4.5	3.1	9191	chr3R	8403009	intron	CG45263 -	chr3R	8407604	intron	CG45263 -	chr3R	8412200	intron	CG45263 -	chr3R_17_8405001	chr3R_8405001	RAL-712
1231	chr3R	8570478	8570497	chr3R	8575113	8575133	HMS-Beagle	10	4636	1.0	0.5	0.8	5.6	4655	chr3R	8570478	intergenic	not near genes	chr3R	8572806	intergenic	not near genes	chr3R	8575133	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	RAL-712
1233	chr3R	8601772	8601799	chr3R	8610925	8610952	roo	7	9153	2.0	2.5	2.2	2.2	9180	chr3R	8601772	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610952	intron	5-HT2B +	chr3R_7_8605001	chr3R_8605001	RAL-712
1234	chr3R	8707367	8707387	chr3R	8709807	8709827	jockey	11	2441	2.5	2.5	2.5	3.1	2460	chr3R	8707367	intergenic	not near genes	chr3R	8708597	intergenic	not near genes	chr3R	8709827	intergenic	not near genes	chr3R_11_8705001	chr3R_8705001	RAL-712
1237	chr3R	8894878	8894906	chr3R	8896034	8896061	1360	8	1156	1.0	3.5	2.2	2.5	1183	chr3R	8894878	intron	pyd -	chr3R	8895470	intron	pyd -	chr3R	8896061	intron	pyd -	chr3R_8_8895001	chr3R_8895001	RAL-712
1243	chr3R	9278781	9278800	chr3R	9284041	9284059	Rt1a	6	5260	3.0	3.5	3.2	1.4	5278	chr3R	9278781	intergenic	not near genes	chr3R	9281420	intergenic	not near genes	chr3R	9284059	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-712
1244	chr3R	9361817	9361846	chr3R	9362058	9362087	pogo	4	241	1.5	1.0	1.2	1.8	270	chr3R	9361817	3` UTR	CG45050 +	chr3R	9361952	3` UTR	CG45050 +	chr3R	9362087	3` UTR	CG45050 +	chr3R_4_9360001	chr3R_9360001	RAL-712
1249	chr3R	9699973	9699995	chr3R	9700062	9700084	1360	6	88	4.5	4.0	4.2	1.2	111	chr3R	9699973	intron	Unc-115a -	chr3R	9700028	intron	Unc-115a -	chr3R	9700084	intron	Unc-115a -	chr3R_6_9700001	chr3R_9700001	RAL-712
1255	chr3R	10231790	10231811	chr3R	10237367	10237388	mdg3	4	5577	0.5	3.0	1.8	1.4	5598	chr3R	10231790	intron	CG42795 +	chr3R	10234589	intron	CG42795 +	chr3R	10237388	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-712
1268	chr3R	10957870	10957885	chr3R	10963255	10963270	Rt1c	4	5385	5.0	6.5	5.8	0.6	5400	chr3R	10957870	intergenic	not near genes	chr3R	10960570	intergenic	not near genes	chr3R	10963270	intergenic	not near genes	chr3R_4_10960001	chr3R_10960001	RAL-712
1281	chr3R	11379239	11379260	chr3R	11388394	11388415	roo	6	9154	3.5	3.5	3.5	1.3	9176	chr3R	11379239	intron	pros +	chr3R	11383827	intron	pros +	chr3R	11388415	intron	pros +	chr3R_6_11380001	chr3R_11380001	RAL-712
1285	chr3R	11841062	11841097	chr3R	11846253	11846287	BS	13	5191	1.5	1.5	1.5	5.2	5225	chr3R	11841062	intron	CG6959 -	chr3R	11843674	intron	CG6959 -	chr3R	11846287	intron	CG6959 -	chr3R_13_11840001	chr3R_11840001	RAL-712
1289	chr3R	12022884	12022908	chr3R	12025061	12025085	pogo	10	2177	1.5	2.0	1.8	3.6	2201	chr3R	12022884	intergenic	not near genes	chr3R	12023984	intergenic	not near genes	chr3R	12025085	intergenic	not near genes	chr3R_10_12020001	chr3R_12020001	RAL-712
1305	chr3R	13314107	13314125	chr3R	13318895	13318913	Doc	4	4788	1.5	1.5	1.5	1.6	4806	chr3R	13314107	intergenic	not near genes	chr3R	13316510	intergenic	not near genes	chr3R	13318913	intergenic	CG45080 -	chr3R_4_13315001	chr3R_13315001	RAL-712
1317	chr3R	14021648	14021679	chr3R	14023465	14023495	S-element	10	1817	2.0	1.5	1.8	3.6	1847	chr3R	14021648	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023495	intron	rdx -	chr3R_10_14020001	chr3R_14020001	RAL-712
1322	chr3R	14180814	14180833	chr3R	14185579	14185598	F-element	7	4765	1.0	2.0	1.5	2.8	4784	chr3R	14180814	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185598	intron	Dop1R1 -	chr3R_7_14180001	chr3R_14180001	RAL-712
1323	chr3R	14194449	14194461	chr3R	14203598	14203610	roo	6	9149	3.5	5.5	4.5	1.1	9161	chr3R	14194449	intron	Dop1R1 -	chr3R	14199030	intron	Dop1R1 -	chr3R	14203610	intron	Dop1R1 -	chr3R_6_14195001	chr3R_14195001	RAL-712
1324	chr3R	14246396	14246416	chr3R	14247892	14247911	jockey	4	1496	0.5	2.0	1.2	1.8	1515	chr3R	14246396	intergenic	not near genes	chr3R	14247154	intergenic	not near genes	chr3R	14247911	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-712
1334	chr3R	15041423	15041457	chr3R	15045191	15045225	Doc	5	3768	1.0	1.0	1.0	2.5	3802	chr3R	15041423	intergenic	not near genes	chr3R	15043324	intergenic	not near genes	chr3R	15045225	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	RAL-712
1337	chr3R	15102522	15102530	chr3R	15109777	15109785	412	5	7255	0.0	4.0	2.0	1.7	7263	chr3R	15102522	intron	CG42788 -	chr3R	15106154	intron	CG42788 -	chr3R	15109785	intron	CG42788 -	chr3R_5_15105001	chr3R_15105001	RAL-712
1338	chr3R	15132048	15132084	chr3R	15135108	15135144	Juan	4	3060	3.5	2.5	3.0	1.0	3096	chr3R	15132048	intergenic	CG42788 -	chr3R	15133596	intergenic	not near genes	chr3R	15135144	3` UTR	CG6912 -	chr3R_4_15130001	chr3R_15130001	RAL-712
1339	chr3R	15162554	15162569	chr3R	15167321	15167336	F-element	5	4767	5.5	3.0	4.2	1.0	4782	chr3R	15162554	intron	Gyc88E +	chr3R	15164945	intron	Gyc88E +	chr3R	15167336	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	RAL-712
1344	chr3R	15601164	15601195	chr3R	15608686	15608717	412	11	7522	5.0	2.5	3.8	2.3	7553	chr3R	15601164	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608717	intergenic	not near genes	chr3R_11_15600001	chr3R_15600001	RAL-712
1345	chr3R	15618735	15618750	chr3R	15626208	15626224	blood	12	7473	3.5	3.5	3.5	2.7	7489	chr3R	15618735	intergenic	not near genes	chr3R	15622480	intergenic	not near genes	chr3R	15626224	intergenic	not near genes	chr3R_12_15620001	chr3R_15620001	RAL-712
1357	chr3R	16189408	16189443	chr3R	16189811	16189846	invader4	10	403	1.0	0.0	0.5	6.7	438	chr3R	16189408	intron	sra +	chr3R	16189627	intron	sra +	chr3R	16189846	intron	sra +	chr3R_10_16185001	chr3R_16185001	RAL-712
1365	chr3R	16756323	16756352	chr3R	16762514	16762543	diver	7	6191	1.5	3.0	2.2	2.2	6220	chr3R	16756323	intron	bxd -	chr3R	16759433	intron	bxd -	chr3R	16762543	intron	bxd -	chr3R_7_16755001	chr3R_16755001	RAL-712
1373	chr3R	17294667	17294701	chr3R	17295095	17295129	BS	7	428	0.5	2.5	1.5	2.8	462	chr3R	17294667	intergenic	not near genes	chr3R	17294898	intergenic	not near genes	chr3R	17295129	intergenic	not near genes	chr3R_7_17290001	chr3R_17290001	RAL-712
1375	chr3R	17591288	17591311	chr3R	17591724	17591744	F-element	5	435	7.0	1.5	4.2	1.0	456	chr3R	17591288	intergenic	not near genes	chr3R	17591516	intergenic	not near genes	chr3R	17591744	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	RAL-712
1377	chr3R	17925851	17925889	chr3R	17927317	17927356	hobo	15	1467	1.0	5.5	3.2	3.6	1505	chr3R	17925851	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_15_17925001	chr3R_17925001	RAL-712
1387	chr3R	18606503	18606533	chr3R	18610735	18610765	F-element	9	4232	2.5	3.5	3.0	2.2	4262	chr3R	18606503	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610765	intron,intron	qin +,CG14304 -	chr3R_9_18605001	chr3R_18605001	RAL-712
1416	chr3R	20266522	20266548	chr3R	20272993	20273019	Burdock	5	6471	4.5	2.0	3.2	1.2	6497	chr3R	20266522	intron	cic +	chr3R	20269770	intron	cic +	chr3R	20273019	intron	cic +	chr3R_5_20265001	chr3R_20265001	RAL-712
1431	chr3R	21141702	21141707	chr3R	21150182	21150185	Tirant	4	8480	1.0	3.5	2.2	1.2	8483	chr3R	21141702	intron	SNF4Agamma +	chr3R	21145944	intron	SNF4Agamma +	chr3R	21150185	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-712
1439	chr3R	21609013	21609040	chr3R	21611647	21611674	NOF	8	2633	1.5	4.0	2.8	2.1	2661	chr3R	21609013	intron	InR -	chr3R	21610344	intron	InR -	chr3R	21611674	intron	InR -	chr3R_8_21610001	chr3R_21610001	RAL-712
1443	chr3R	21761128	21761144	chr3R	21768520	21768536	mdg1	6	7392	5.0	3.5	4.2	1.2	7408	chr3R	21761128	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768536	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-712
1458	chr3R	22234685	22234715	chr3R	22236004	22236034	pogo	8	1319	1.5	2.0	1.8	2.9	1349	chr3R	22234685	intron	SKIP +	chr3R	22235360	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_8_22235001	chr3R_22235001	RAL-712
1459	chr3R	22239490	22239525	chr3R	22248550	22248585	roo	9	9060	1.0	2.5	1.8	3.2	9095	chr3R	22239490	intron	SKIP +	chr3R	22244038	intron	SKIP +	chr3R	22248585	intron	SKIP +	chr3R_9_22240001	chr3R_22240001	RAL-712
1462	chr3R	22450541	22450575	chr3R	22453181	22453215	NOF	8	2639	1.5	2.5	2.0	2.7	2674	chr3R	22450541	intron	CG34376 +	chr3R	22451878	intron	CG34376 +	chr3R	22453215	intron	CG34376 +	chr3R_8_22450001	chr3R_22450001	RAL-712
1481	chr3R	23558402	23558429	chr3R	23560183	23560210	Bari1	10	1781	0.5	2.0	1.2	4.5	1808	chr3R	23558402	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560210	intron	beat-IV +	chr3R_10_23555001	chr3R_23555001	RAL-712
1487	chr3R	23684694	23684729	chr3R	23685180	23685215	roo	14	485	1.0	3.5	2.2	4.4	521	chr3R	23684694	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685215	exon	CG18754 +	chr3R_14_23680001	chr3R_23680001	RAL-712
1491	chr3R	23835411	23835434	chr3R	23844561	23844584	roo	6	9150	1.5	2.5	2.0	2.0	9173	chr3R	23835411	intron	CG34355 +	chr3R	23839998	intron	CG34355 +	chr3R	23844584	intron	CG34355 +	chr3R_6_23835001	chr3R_23835001	RAL-712
1494	chr3R	24072085	24072112	chr3R	24072523	24072550	jockey	11	438	5.0	2.5	3.8	2.3	465	chr3R	24072085	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072550	intron	4EHP -	chr3R_11_24070001	chr3R_24070001	RAL-712
1497	chr3R	24207215	24207245	chr3R	24212291	24212321	flea	6	5076	4.0	4.5	4.2	1.2	5106	chr3R	24207215	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212321	intron	twin -	chr3R_6_24205001	chr3R_24205001	RAL-712
1501	chr3R	24493276	24493308	chr3R	24493505	24493537	BS	6	229	2.0	5.0	3.5	1.3	261	chr3R	24493276	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493537	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-712
1505	chr3R	24927122	24927164	chr3R	24931913	24931955	Doc	13	4791	4.0	1.0	2.5	3.7	4833	chr3R	24927122	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931955	intergenic	CG11771 +	chr3R_13_24925001	chr3R_24925001	RAL-712
1523	chr3R	25832698	25832712	chr3R	25841880	25841894	roo	5	9182	4.5	4.5	4.5	0.9	9196	chr3R	25832698	exon	alpha4GT2 +	chr3R	25837296	intron	alpha4GT2 +	chr3R	25841894	exon	alpha4GT2 +	chr3R_5_25835001	chr3R_25835001	RAL-712
1535	chr3R	26376323	26376350	chr3R	26385483	26385510	roo	8	9159	2.5	0.0	1.2	3.6	9187	chr3R	26376323	intergenic	not near genes	chr3R	26380916	intergenic	not near genes	chr3R	26385510	intergenic	not near genes	chr3R_8_26380001	chr3R_26380001	RAL-712
1539	chr3R	26558328	26558349	chr3R	26565640	26565661	Stalker4	7	7312	2.0	2.5	2.2	2.2	7333	chr3R	26558328	intron	scrib +	chr3R	26561994	intron	scrib +	chr3R	26565661	intron	scrib +	chr3R_7_26560001	chr3R_26560001	RAL-712
1542	chr3R	26642729	26642760	chr3R	26643121	26643154	jockey	6	394	0.5	3.5	2.0	2.0	425	chr3R	26642729	intergenic	not near genes	chr3R	26642942	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RAL-712
1549	chr3R	26810552	26810586	chr3R	26811037	26811068	roo	4	484	1.0	3.0	2.0	1.3	516	chr3R	26810552	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811068	intron	Tl +	chr3R_4_26810001	chr3R_26810001	RAL-712
1552	chr3R	27007419	27007437	chr3R	27016554	27016569	roo	4	9134	0.0	3.5	1.8	1.4	9150	chr3R	27007419	intron	RYa-R +	chr3R	27011994	intron	RYa-R +	chr3R	27016569	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	RAL-712
1553	chr3R	27140514	27140547	chr3R	27148124	27148157	412	12	7610	4.5	2.0	3.2	2.9	7643	chr3R	27140514	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148157	intron	CG6051 -	chr3R_12_27140001	chr3R_27140001	RAL-712
1558	chr3R	27342795	27342820	chr3R	27351376	27351400	Tirant	5	8581	3.5	3.0	3.2	1.2	8605	chr3R	27342795	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351400	intron	CG42534 +	chr3R_5_27345001	chr3R_27345001	RAL-712
1567	chr3R	27856758	27856790	chr3R	27858241	27858272	hopper2	10	1483	3.5	3.0	3.2	2.4	1514	chr3R	27856758	intron	CG34353 -	chr3R	27857515	intron	CG34353 -	chr3R	27858272	intron	CG34353 -	chr3R_10_27855001	chr3R_27855001	RAL-712
1568	chr3R	27862953	27862985	chr3R	27868258	27868290	Transpac	11	5305	2.5	1.5	2.0	3.7	5337	chr3R	27862953	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868290	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	RAL-712
1569	chr3R	27875699	27875722	chr3R	27882754	27882775	297	6	7054	4.5	1.5	3.0	1.5	7076	chr3R	27875699	intron	CG34353 -	chr3R	27879237	intron	CG34353 -	chr3R	27882775	intron	CG34353 -	chr3R_6_27875001	chr3R_27875001	RAL-712
1572	chr3R	28068499	28068525	chr3R	28073941	28073967	I-element	7	5442	1.0	3.5	2.2	2.2	5468	chr3R	28068499	intron	CG34362 +	chr3R	28071233	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_7_28070001	chr3R_28070001	RAL-712
1581	chr3R	28253350	28253371	chr3R	28255860	28255881	jockey	8	2510	2.0	3.0	2.5	2.3	2531	chr3R	28253350	intergenic	not near genes	chr3R	28254616	intergenic	not near genes	chr3R	28255881	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	RAL-712
1583	chr3R	28302099	28302132	chr3R	28302538	28302569	jockey	11	439	1.5	3.5	2.5	3.1	470	chr3R	28302099	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302569	intergenic	not near genes	chr3R_11_28300001	chr3R_28300001	RAL-712
1587	chr3R	28792880	28792891	chr3R	28797975	28797986	jockey	4	5095	2.0	1.5	1.8	1.4	5106	chr3R	28792880	intergenic	not near genes	chr3R	28795433	intergenic	not near genes	chr3R	28797986	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	RAL-712
1596	chr3R	29079381	29079407	chr3R	29080753	29080779	NOF	7	1372	3.0	6.0	4.5	1.3	1398	chr3R	29079381	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080779	intron	CG11873 +	chr3R_7_29080001	chr3R_29080001	RAL-712
1599	chr3R	29319835	29319856	chr3R	29320154	29320175	jockey	8	318	1.5	3.5	2.5	2.3	340	chr3R	29319835	intergenic	Cnx99A -	chr3R	29320005	intergenic	Cnx99A -	chr3R	29320175	intergenic	not near genes	chr3R_8_29320001	chr3R_29320001	RAL-712
1603	chr3R	29406617	29406641	chr3R	29407903	29407926	jockey	8	1286	4.5	5.0	4.8	1.4	1309	chr3R	29406617	intron	Ptp99A +	chr3R	29407272	intron	Ptp99A +	chr3R	29407926	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-712
1611	chr3R	29738268	29738301	chr3R	29739735	29739768	hobo	4	1467	1.5	4.0	2.8	1.1	1500	chr3R	29738268	intergenic	CG1969 +,CG7598 +	chr3R	29739018	intron	CG1969 +	chr3R	29739768	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	RAL-712
1612	chr3R	29760376	29760393	chr3R	29761574	29761594	pogo	4	1200	3.5	1.5	2.5	1.1	1218	chr3R	29760376	intergenic	not near genes	chr3R	29760985	intergenic	not near genes	chr3R	29761594	intergenic	not near genes	chr3R_4_29760001	chr3R_29760001	RAL-712
1615	chr3R	29882031	29882050	chr3R	29891188	29891207	roo	6	9157	1.5	5.0	3.2	1.4	9176	chr3R	29882031	intron	CG31038 +	chr3R	29886619	intron	CG31038 +	chr3R	29891207	intron	CG31038 +	chr3R_6_29885001	chr3R_29885001	RAL-712
1621	chr3R	30084848	30084881	chr3R	30086315	30086348	hobo	10	1467	0.0	5.5	2.8	2.6	1500	chr3R	30084848	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086348	intron	sima +	chr3R_10_30085001	chr3R_30085001	RAL-712
1625	chr3R	30238760	30238796	chr3R	30239924	30239960	1360	9	1164	2.0	1.5	1.8	3.2	1200	chr3R	30238760	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239960	intergenic	not near genes	chr3R_9_30235001	chr3R_30235001	RAL-712
1629	chr3R	30396218	30396242	chr3R	30404484	30404508	roo	6	8266	1.5	3.0	2.2	1.9	8290	chr3R	30396218	intergenic	not near genes	chr3R	30400363	intergenic	not near genes	chr3R	30404508	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	RAL-712
1635	chr3R	30480477	30480512	chr3R	30482945	30482980	jockey	12	2468	0.5	2.5	1.5	4.8	2503	chr3R	30480477	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482980	intron	PH4alphaEFB +	chr3R_12_30480001	chr3R_30480001	RAL-712
1648	chr3R	31279388	31279407	chr3R	31285579	31285598	diver	5	6191	4.0	4.5	4.2	1.0	6210	chr3R	31279388	intergenic	not near genes	chr3R	31282493	intergenic	not near genes	chr3R	31285598	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-712
1651	chr3R	31413089	31413117	chr3R	31418289	31418317	copia	11	5199	4.0	0.0	2.0	3.7	5228	chr3R	31413089	intron	Gprk2 +	chr3R	31415703	intron	Gprk2 +	chr3R	31418317	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-712
1655	chr3R	31691540	31691560	chr3R	31696296	31696326	Doc	5	4763	3.0	3.5	3.2	1.2	4786	chr3R	31691540	intergenic	not near genes	chr3R	31693933	intergenic	not near genes	chr3R	31696326	intergenic	not near genes	chr3R_5_31690001	chr3R_31690001	RAL-712
1659	chr3R	31998005	31998025	chr3R	32005474	32005490	blood	5	7469	1.5	5.0	3.2	1.2	7485	chr3R	31998005	intron	heph -	chr3R	32001748	intron	heph -	chr3R	32005490	intron	heph -	chr3R_5_32000001	chr3R_32000001	RAL-712
1661	chr4	76492	76518	chr4	81935	81961	I-element	4	5443	0.5	2.5	1.5	1.6	5469	chr4	76492	intron	pan +	chr4	79226	intron	pan +	chr4	81961	intron	pan +	chr4_4_75001	chr4_75001	RAL-712
1662	chr4	671606	671634	chr4	680187	680217	Tirant	8	8583	2.0	2.5	2.2	2.5	8611	chr4	671606	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680217	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-712
1664	chrX	295860	295877	chrX	303480	303495	412	4	7619	2.0	3.0	2.5	1.1	7635	chrX	295860	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303495	intron	CG3777 +	chrX_4_295001	chrX_295001	RAL-712
1666	chrX	428419	428438	chrX	434604	434622	3S18	4	6184	3.0	2.0	2.5	1.1	6203	chrX	428419	intron	CG32816 -	chrX	431520	intron	CG32816 -	chrX	434622	intron	CG32816 -	chrX_4_430001	chrX_430001	RAL-712
1668	chrX	551421	551429	chrX	558983	558989	412	4	7561	2.5	2.0	2.2	1.2	7568	chrX	551421	intron	Appl +	chrX	555205	intron	Appl +	chrX	558989	intron	Appl +	chrX_4_555001	chrX_555001	RAL-712
1671	chrX	812266	812290	chrX	817897	817921	297	6	5631	2.0	2.5	2.2	1.9	5655	chrX	812266	intron	CG43867 -	chrX	815094	intron	CG43867 -	chrX	817921	intron	CG43867 -	chrX_6_815001	chrX_815001	RAL-712
1672	chrX	827601	827619	chrX	835391	835410	roo	4	7791	5.5	1.5	3.5	0.9	7809	chrX	827601	intron	CG43867 -	chrX	831506	intron	CG43867 -	chrX	835410	intron	CG43867 -	chrX_4_830001	chrX_830001	RAL-712
1673	chrX	906701	906722	chrX	908490	908511	S-element	9	1788	2.5	1.5	2.0	3.0	1810	chrX	906701	intron	CG43867 -	chrX	907606	intron	CG43867 -	chrX	908511	intron	CG43867 -	chrX_9_905001	chrX_905001	RAL-712
1679	chrX	1518035	1518071	chrX	1523437	1523472	jockey	4	5401	1.5	3.0	2.2	1.2	5437	chrX	1518035	intergenic	inc +	chrX	1520754	intergenic	not near genes	chrX	1523472	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-712
1681	chrX	1627984	1627999	chrX	1635452	1635467	gtwin	5	7468	3.0	5.0	4.0	1.0	7483	chrX	1627984	intron,intron	Mur2B -,br +	chrX	1631726	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-712
1683	chrX	1930545	1930570	chrX	1938116	1938138	opus	4	7570	2.5	1.5	2.0	1.3	7593	chrX	1930545	intergenic	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938138	3` UTR	CG3857 -	chrX_4_1930001	chrX_1930001	RAL-712
1684	chrX	1954889	1954911	chrX	1962828	1962851	Stalker2	4	7939	3.0	2.0	2.5	1.1	7962	chrX	1954889	intron	Hr4 +	chrX	1958870	intron	Hr4 +	chrX	1962851	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-712
1689	chrX	2399836	2399869	chrX	2408189	2408222	roo	11	8353	2.5	1.5	2.0	3.7	8386	chrX	2399836	intergenic	not near genes	chrX	2404029	intergenic	not near genes	chrX	2408222	intergenic	not near genes	chrX_11_2400001	chrX_2400001	RAL-712
1695	chrX	2610384	2610398	chrX	2617500	2617515	HMS-Beagle	6	7117	2.0	2.0	2.0	2.0	7131	chrX	2610384	intergenic	CG8636 -	chrX	2613950	intergenic	not near genes	chrX	2617515	intergenic	Tsp3A -	chrX_6_2610001	chrX_2610001	RAL-712
1698	chrX	2844897	2844932	chrX	2852307	2852342	mdg1	11	7410	0.0	0.0	0.0	11.0	7445	chrX	2844897	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852342	intron	kirre +	chrX_11_2845001	chrX_2845001	RAL-712
1701	chrX	3075634	3075648	chrX	3080941	3080955	Transpac	4	5307	0.5	0.0	0.2	3.3	5321	chrX	3075634	intron	kirre +	chrX	3078294	intron	kirre +	chrX	3080955	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-712
1704	chrX	3597551	3597571	chrX	3619719	3619739	roo	11	22168	4.5	4.5	4.5	2.0	22188	chrX	3597551	intron	AstA-R1 +	chrX	3608645	intron	AstA-R1 +	chrX	3619739	intron	AstA-R1 +	chrX_11_3605001	chrX_3605001	RAL-712
1708	chrX	3842331	3842349	chrX	3842572	3842590	pogo	5	241	2.5	1.5	2.0	1.7	259	chrX	3842331	intron	ec +	chrX	3842460	intron	ec +	chrX	3842590	intron	ec +	chrX_5_3840001	chrX_3840001	RAL-712
1713	chrX	3986872	3986896	chrX	3994504	3994529	412	7	7633	4.5	4.5	4.5	1.3	7657	chrX	3986872	intergenic	not near genes	chrX	3990700	intergenic	not near genes	chrX	3994529	intergenic	not near genes	chrX_7_3990001	chrX_3990001	RAL-712
1715	chrX	4157901	4157923	chrX	4164931	4164958	297	5	7032	2.0	1.5	1.8	1.8	7057	chrX	4157901	intron	Fas2 -	chrX	4161430	intron	Fas2 -	chrX	4164958	intron	Fas2 -	chrX_5_4160001	chrX_4160001	RAL-712
1720	chrX	4731812	4731831	chrX	4736904	4736924	jockey	6	5093	5.0	4.0	4.5	1.1	5112	chrX	4731812	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_6_4730001	chrX_4730001	RAL-712
1722	chrX	4763252	4763275	chrX	4763739	4763763	Stalker4	4	488	1.5	3.0	2.2	1.2	511	chrX	4763252	intergenic	not near genes	chrX	4763508	intergenic	not near genes	chrX	4763763	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-712
1723	chrX	4792379	4792403	chrX	4792811	4792835	jockey	6	433	2.5	3.5	3.0	1.5	456	chrX	4792379	intergenic	not near genes	chrX	4792607	intergenic	not near genes	chrX	4792835	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-712
1725	chrX	4827966	4827998	chrX	4835337	4835369	Stalker4	8	7370	1.5	2.0	1.8	2.9	7403	chrX	4827966	intergenic	not near genes	chrX	4831668	intergenic	not near genes	chrX	4835369	intergenic	not near genes	chrX_8_4830001	chrX_4830001	RAL-712
1727	chrX	5096273	5096306	chrX	5103838	5103870	springer	8	7565	4.0	0.5	2.2	2.5	7597	chrX	5096273	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103870	intron,intron	CG15465 +,rg +	chrX_8_5100001	chrX_5100001	RAL-712
1730	chrX	5338709	5338737	chrX	5339958	5339984	jockey	5	1251	2.0	0.5	1.2	2.3	1275	chrX	5338709	intergenic	not near genes	chrX	5339346	intergenic	not near genes	chrX	5339984	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-712
1733	chrX	5884168	5884187	chrX	5884409	5884428	pogo	4	241	2.5	0.5	1.5	1.6	260	chrX	5884168	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884428	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-712
1734	chrX	6171591	6171608	chrX	6179024	6179041	Quasimodo	4	7433	2.5	1.5	2.0	1.3	7450	chrX	6171591	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179041	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-712
1737	chrX	6335226	6335236	chrX	6337736	6337746	Tirant	4	2510	0.0	4.5	2.2	1.2	2520	chrX	6335226	intergenic	not near genes	chrX	6336486	intergenic	not near genes	chrX	6337746	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-712
1739	chrX	6392867	6392896	chrX	6397629	6397661	Doc	5	4764	2.0	1.5	1.8	1.8	4794	chrX	6392867	intergenic	not near genes	chrX	6395264	intergenic	not near genes	chrX	6397661	intergenic	not near genes	chrX_5_6395001	chrX_6395001	RAL-712
1740	chrX	6562817	6562851	chrX	6571299	6571330	Tirant	23	8482	2.0	2.5	2.2	7.2	8513	chrX	6562817	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571330	intron	CG34417 +	chrX_23_6565001	chrX_6565001	RAL-712
1742	chrX	6605482	6605506	chrX	6608503	6608528	Burdock	4	3022	0.0	4.0	2.0	1.3	3046	chrX	6605482	intron	pigs +	chrX	6607005	intron	pigs +	chrX	6608528	intron	pigs +	chrX_4_6605001	chrX_6605001	RAL-712
1746	chrX	7023599	7023630	chrX	7030989	7031020	Tabor	7	7390	3.0	2.0	2.5	2.0	7421	chrX	7023599	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031020	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-712
1747	chrX	7125247	7125276	chrX	7134405	7134435	roo	8	9159	1.0	2.0	1.5	3.2	9188	chrX	7125247	intergenic	not near genes	chrX	7129841	intergenic	not near genes	chrX	7134435	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-712
1751	chrX	7702907	7702926	chrX	7703346	7703365	jockey	4	439	2.5	4.0	3.2	1.0	458	chrX	7702907	intron	CHES-1-like -	chrX	7703136	intron	CHES-1-like -	chrX	7703365	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-712
1752	chrX	7845726	7845752	chrX	7847217	7847243	hopper2	7	1491	0.0	1.5	0.8	3.9	1517	chrX	7845726	intergenic	not near genes	chrX	7846484	intergenic	not near genes	chrX	7847243	intergenic	not near genes	chrX_7_7845001	chrX_7845001	RAL-712
1759	chrX	8922328	8922361	chrX	8922762	8922795	jockey	9	434	3.0	3.5	3.2	2.1	467	chrX	8922328	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922795	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-712
1760	chrX	8948756	8948791	chrX	8956266	8956299	roo	4	7510	0.0	1.0	0.5	2.7	7543	chrX	8948756	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956299	intron	rdgA +	chrX_4_8950001	chrX_8950001	RAL-712
1767	chrX	9508134	9508165	chrX	9509651	9509683	jockey	4	1518	2.5	2.5	2.5	1.1	1549	chrX	9508134	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509683	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-712
1768	chrX	9575797	9575824	chrX	9576119	9576148	mdg3	8	323	2.0	1.5	1.8	2.9	351	chrX	9575797	intron,exon	CG32699 -,CG42395 -	chrX	9575972	intron,intron	CG32699 -,CG42395 -	chrX	9576148	intron,5` UTR	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-712
1773	chrX	10550857	10550889	chrX	10552324	10552356	hobo	7	1467	1.5	1.5	1.5	2.8	1499	chrX	10550857	intron	spri -	chrX	10551606	intron	spri -	chrX	10552356	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-712
1775	chrX	10686055	10686070	chrX	10691192	10691207	roo	5	5137	3.0	1.5	2.2	1.6	5152	chrX	10686055	intron	X11Lbeta +	chrX	10688631	intron	X11Lbeta +	chrX	10691207	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-712
1779	chrX	11095998	11096020	chrX	11103100	11103122	HMS-Beagle	5	7102	4.0	1.5	2.8	1.3	7124	chrX	11095998	intergenic	not near genes	chrX	11099560	intergenic	not near genes	chrX	11103122	intron	CG42249 +	chrX_5_11095001	chrX_11095001	RAL-712
1780	chrX	11633417	11633449	chrX	11640471	11640503	297	8	7054	3.5	2.0	2.8	2.1	7086	chrX	11633417	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_8_11635001	chrX_11635001	RAL-712
1799	chrX	13937980	13938000	chrX	13941251	13941271	I-element	4	3270	1.0	1.0	1.0	2.0	3291	chrX	13937980	intron	mamo -	chrX	13939626	intron	mamo -	chrX	13941271	intron	mamo -	chrX_4_13935001	chrX_13935001	RAL-712
1800	chrX	14105020	14105053	chrX	14114171	14114204	roo	6	9150	1.5	3.0	2.2	1.9	9184	chrX	14105020	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114204	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-712
1801	chrX	14157600	14157617	chrX	14163257	14163274	297	10	5657	0.5	2.0	1.2	4.5	5674	chrX	14157600	intergenic	not near genes	chrX	14160437	intergenic	not near genes	chrX	14163274	intergenic	not near genes	chrX_10_14160001	chrX_14160001	RAL-712
1805	chrX	14636465	14636492	chrX	14641906	14641933	I-element	6	5441	2.5	2.0	2.2	1.9	5468	chrX	14636465	intron	NetA -	chrX	14639199	intron	NetA -	chrX	14641933	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-712
1806	chrX	14778027	14778062	chrX	14782824	14782859	Doc	8	4797	1.0	1.5	1.2	3.6	4832	chrX	14778027	intergenic	CG5347 +	chrX	14780443	intergenic	not near genes	chrX	14782859	intergenic	Ag5r2 -	chrX_8_14780001	chrX_14780001	RAL-712
1807	chrX	14818763	14818797	chrX	14823967	14824001	copia	6	5204	2.5	3.0	2.8	1.6	5238	chrX	14818763	intron	rut -	chrX	14821382	intron	rut -	chrX	14824001	intron	rut -	chrX_6_14820001	chrX_14820001	RAL-712
1811	chrX	15273715	15273723	chrX	15274882	15274889	1360	4	1167	6.5	5.0	5.8	0.6	1174	chrX	15273715	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274889	intergenic	not near genes	chrX_4_15270001	chrX_15270001	RAL-712
1813	chrX	15413059	15413074	chrX	15417361	15417376	Juan	4	4302	2.5	0.0	1.2	1.8	4317	chrX	15413059	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417376	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-712
1814	chrX	15435689	15435705	chrX	15436122	15436138	rover	7	433	0.0	4.5	2.2	2.2	449	chrX	15435689	intron	Cngl -	chrX	15435914	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_7_15435001	chrX_15435001	RAL-712
1817	chrX	16222777	16222809	chrX	16231127	16231159	roo	6	8350	0.0	0.0	0.0	6.0	8382	chrX	16222777	intergenic	not near genes	chrX	16226968	intergenic	not near genes	chrX	16231159	intergenic	not near genes	chrX_6_16225001	chrX_16225001	RAL-712
1819	chrX	16492647	16492679	chrX	16498224	16498256	mdg3	5	5577	2.0	1.0	1.5	2.0	5609	chrX	16492647	intron	para -	chrX	16495452	intron	para -	chrX	16498256	intron	para -	chrX_5_16495001	chrX_16495001	RAL-712
1824	chrX	17195222	17195234	chrX	17200308	17200320	flea	6	5085	2.0	4.5	3.2	1.4	5098	chrX	17195222	3` UTR	baz +	chrX	17197771	3` UTR	baz +	chrX	17200320	3` UTR	baz +	chrX_6_17195001	chrX_17195001	RAL-712
1836	chrX	18194065	18194105	chrX	18194600	18194640	BS	11	535	1.0	2.0	1.5	4.4	575	chrX	18194065	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194640	intron	Frq2 +	chrX_11_18190001	chrX_18190001	RAL-712
1837	chrX	18429492	18429527	chrX	18434803	18434838	Transpac	5	5311	1.0	1.5	1.2	2.3	5346	chrX	18429492	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-712
1840	chrX	18957079	18957088	chrX	18965741	18965746	roo	4	8662	2.0	0.5	1.2	1.8	8667	chrX	18957079	intron	CG43759 +	chrX	18961412	intron	CG43759 +	chrX	18965746	intron	CG43759 +	chrX_4_18960001	chrX_18960001	RAL-712
1843	chrX	19060424	19060438	chrX	19065208	19065222	Doc	4	4784	1.5	2.0	1.8	1.4	4798	chrX	19060424	intron	CG14190 +	chrX	19062823	intron	CG14190 +	chrX	19065222	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-712
1853	chrX	19356987	19357016	chrX	19358428	19358457	NOF	12	1441	2.5	0.5	1.5	4.8	1470	chrX	19356987	intron	kek5 +	chrX	19357722	intron	kek5 +	chrX	19358457	intron	kek5 +	chrX_12_19355001	chrX_19355001	RAL-712
1855	chrX	19472117	19472156	chrX	19472687	19472726	jockey	12	570	3.0	1.0	2.0	4.0	609	chrX	19472117	intergenic	kek5 +	chrX	19472422	intergenic	not near genes	chrX	19472726	intergenic	not near genes	chrX_12_19470001	chrX_19470001	RAL-712
1857	chrX	19710073	19710104	chrX	19711859	19711890	S-element	12	1786	0.5	2.5	1.5	4.8	1817	chrX	19710073	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711890	intron	meso18E -	chrX_12_19710001	chrX_19710001	RAL-712
1869	chrX	20377325	20377344	chrX	20378792	20378811	hobo	6	1467	5.0	1.5	3.2	1.4	1486	chrX	20377325	intergenic	not near genes	chrX	20378068	intergenic	not near genes	chrX	20378811	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-712
1872	chrX	20504151	20504157	chrX	20505671	20505678	transib2	4	1520	2.0	4.0	3.0	1.0	1527	chrX	20504151	intron	RhoGAP19D -	chrX	20504914	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-712
1876	chrX	20836726	20836751	chrX	20844327	20844353	roo	5	7602	1.5	1.0	1.2	2.3	7627	chrX	20836726	intron	shakB -	chrX	20840540	intron	shakB -	chrX	20844353	intron	shakB -	chrX_5_20840001	chrX_20840001	RAL-712
1879	chrX	20940726	20940749	chrX	20942195	20942218	hobo	6	1468	4.5	4.0	4.2	1.2	1492	chrX	20940726	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942218	intergenic	not near genes	chrX_6_20940001	chrX_20940001	RAL-712
1881	chrX	21086133	21086155	chrX	21087162	21087184	jockey	6	1029	2.5	1.0	1.8	2.1	1051	chrX	21086133	intergenic	not near genes	chrX	21086658	intergenic	not near genes	chrX	21087184	intergenic	not near genes	chrX_6_21085001	chrX_21085001	RAL-712
1883	chrX	21458691	21458716	chrX	21464127	21464151	Ivk	7	5436	3.0	1.5	2.2	2.2	5460	chrX	21458691	intergenic	not near genes	chrX	21461421	intergenic	not near genes	chrX	21464151	intergenic	not near genes	chrX_7_21460001	chrX_21460001	RAL-712
1888	chrX	22697505	22697524	chrX	22701802	22701821	Juan	4	4297	3.0	3.0	3.0	1.0	4316	chrX	22697505	intron	CR44997 +	chrX	22699663	intron	CR44997 +	chrX	22701821	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-712
1889	chrX	22771506	22771531	chrX	22774797	22774822	297	8	3291	1.0	2.0	1.5	3.2	3316	chrX	22771506	intron	CR44997 +	chrX	22773164	intron	CR44997 +	chrX	22774822	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-712
1891	chrX	22811991	22812001	chrX	22816763	22816773	F-element	4	4772	1.5	1.0	1.2	1.8	4782	chrX	22811991	intergenic	CG12446 -	chrX	22814382	intergenic	not near genes	chrX	22816773	intergenic	not near genes	chrX_4_22810001	chrX_22810001	RAL-712
1895	chrX	22987109	22987134	chrX	22989768	22989792	Burdock	10	2659	0.5	1.0	0.8	5.6	2683	chrX	22987109	intron,intron	stnA -,stnB -	chrX	22988450	intron,intron	stnA -,stnB -	chrX	22989792	intron,intron	stnA -,stnB -	chrX_10_22985001	chrX_22985001	RAL-712