SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 8112 8136 chr2L 9255 9280 11 1144 13.0 25.0 19.0 0.6 1168 chr2L 8112 exon CG11023 + chr2L 8696 3` UTR CG11023 + chr2L 9280 3` UTR CG11023 + chr2L_11_5001 chr2L_5001 RAL-712 2 chr2L 25314 25333 chr2L 26020 26039 4 706 10.5 14.0 12.2 0.3 725 chr2L 25314 intergenic Cda5 -,Ir21a - chr2L 25676 3` UTR Cda5 - chr2L 26039 3` UTR Cda5 - chr2L_4_25001 chr2L_25001 RAL-712 3 chr2L 47462 47488 chr2L 52567 52593 jockey 9 5105 1.5 6.5 4.0 1.8 5131 chr2L 47462 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_9_50001 chr2L_50001 RAL-712 4 chr2L 63043 63076 chr2L 63128 63161 8 85 1.5 1.0 1.2 3.6 118 chr2L 63043 intron Cda5 - chr2L 63102 intron Cda5 - chr2L 63161 intron Cda5 - chr2L_8_60001 chr2L_60001 RAL-712 5 chr2L 73788 73802 chr2L 73896 73911 6 108 3.5 1.5 2.5 1.7 123 chr2L 73788 3` UTR,intron CR44987 -,galectin + chr2L 73850 intron galectin + chr2L 73911 intron galectin + chr2L_6_70001 chr2L_70001 RAL-712 6 chr2L 92580 92598 chr2L 92813 92829 8 233 2.0 3.0 2.5 2.3 249 chr2L 92580 intergenic not near genes chr2L 92704 intergenic not near genes chr2L 92829 intergenic not near genes chr2L_8_90001 chr2L_90001 RAL-712 7 chr2L 140754 140769 chr2L 141100 141115 5 347 1.0 2.0 1.5 2.0 361 chr2L 140754 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 140934 intron,5` UTR,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 141115 intron,3` UTR CG11455 +,CG31974 - chr2L_5_140001 chr2L_140001 RAL-712 8 chr2L 142489 142518 chr2L 142582 142611 10 93 3.0 2.5 2.8 2.6 122 chr2L 142489 intron,5` UTR CG11455 +,CG31974 - chr2L 142550 intron,5` UTR CG11455 +,CG31974 - chr2L 142611 intron,5` UTR CG11455 +,CG31974 - chr2L_10_140001 chr2L_140001 RAL-712 9 chr2L 179457 179487 chr2L 179540 179570 8 82 1.0 3.5 2.2 2.5 113 chr2L 179457 intron spen + chr2L 179514 intron spen + chr2L 179570 intron spen + chr2L_8_175001 chr2L_175001 RAL-712 10 chr2L 263300 263329 chr2L 263446 263475 6 146 1.0 1.5 1.2 2.7 175 chr2L 263300 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-712 11 chr2L 314282 314306 chr2L 314368 314389 8 85 2.0 0.0 1.0 4.0 107 chr2L 314282 intron Plc21C + chr2L 314336 intron Plc21C + chr2L 314389 intron Plc21C + chr2L_8_310001 chr2L_310001 RAL-712 12 chr2L 316714 316736 chr2L 316790 316812 6 76 1.5 3.5 2.5 1.7 98 chr2L 316714 intron Plc21C + chr2L 316763 intron Plc21C + chr2L 316812 intron Plc21C + chr2L_6_315001 chr2L_315001 RAL-712 13 chr2L 325134 325156 chr2L 325211 325233 4 77 3.5 5.0 4.2 0.8 99 chr2L 325134 intron Plc21C + chr2L 325184 intron Plc21C + chr2L 325233 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-712 14 chr2L 347888 347916 chr2L 355388 355416 blood 5 7500 2.0 2.0 2.0 1.7 7528 chr2L 347888 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355416 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-712 15 chr2L 585534 585568 chr2L 585612 585644 10 77 1.5 3.0 2.2 3.1 110 chr2L 585534 intron Gsc - chr2L 585589 intron Gsc - chr2L 585644 intron Gsc - chr2L_10_585001 chr2L_585001 RAL-712 16 chr2L 612620 612646 chr2L 612724 612752 8 105 2.5 1.5 2.0 2.7 132 chr2L 612620 intergenic not near genes chr2L 612686 intergenic not near genes chr2L 612752 intergenic not near genes chr2L_8_610001 chr2L_610001 RAL-712 17 chr2L 658563 658587 chr2L 658642 658666 7 79 3.0 3.5 3.2 1.7 103 chr2L 658563 intron ds - chr2L 658614 intron ds - chr2L 658666 intron ds - chr2L_7_655001 chr2L_655001 RAL-712 18 chr2L 686919 686948 chr2L 695958 695988 roo 6 9039 2.5 3.0 2.8 1.6 9069 chr2L 686919 intron ds - chr2L 691454 intron ds - chr2L 695988 intron ds - chr2L_6_690001 chr2L_690001 RAL-712 19 chr2L 770465 770490 chr2L 772246 772271 Bari1 8 1780 2.0 2.5 2.2 2.5 1806 chr2L 770465 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772271 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-712 20 chr2L 795265 795288 chr2L 795375 795396 7 109 2.5 0.0 1.2 3.2 131 chr2L 795265 intergenic not near genes chr2L 795330 intergenic not near genes chr2L 795396 intergenic not near genes chr2L_7_795001 chr2L_795001 RAL-712 21 chr2L 809563 809598 chr2L 809645 809680 13 82 2.0 0.0 1.0 6.5 117 chr2L 809563 intergenic not near genes chr2L 809622 intergenic not near genes chr2L 809680 intergenic not near genes chr2L_13_805001 chr2L_805001 RAL-712 22 chr2L 931648 931670 chr2L 931726 931745 8 78 2.5 5.5 4.0 1.6 97 chr2L 931648 intron CG4341 + chr2L 931696 intron CG4341 + chr2L 931745 intron CG4341 + chr2L_8_930001 chr2L_930001 RAL-712 23 chr2L 976881 976903 chr2L 984517 984536 roo 7 7636 1.0 1.5 1.2 3.2 7655 chr2L 976881 intergenic not near genes chr2L 980708 intergenic not near genes chr2L 984536 intergenic not near genes chr2L_7_980001 chr2L_980001 RAL-712 24 chr2L 1035559 1035592 chr2L 1035635 1035669 11 77 3.0 3.5 3.2 2.6 110 chr2L 1035559 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-712 25 chr2L 1220128 1220160 chr2L 1227594 1227626 blood 12 7466 1.5 3.0 2.2 3.8 7498 chr2L 1220128 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_12_1220001 chr2L_1220001 RAL-712 26 chr2L 1541622 1541657 chr2L 1541731 1541766 9 108 1.5 2.5 2.0 3.0 144 chr2L 1541622 intergenic not near genes chr2L 1541694 intergenic not near genes chr2L 1541766 intergenic not near genes chr2L_9_1540001 chr2L_1540001 RAL-712 27 chr2L 1570685 1570717 chr2L 1573556 1573589 F-element 6 2872 2.5 1.0 1.8 2.1 2904 chr2L 1570685 intron haf + chr2L 1572137 intron haf + chr2L 1573589 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-712 28 chr2L 1591862 1591894 chr2L 1591946 1591978 6 84 0.0 2.0 1.0 3.0 116 chr2L 1591862 intron haf + chr2L 1591920 intron haf + chr2L 1591978 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-712 29 chr2L 1711363 1711383 chr2L 1711687 1711707 mdg3 4 324 3.0 4.5 3.8 0.8 344 chr2L 1711363 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-712 30 chr2L 1717494 1717512 chr2L 1717586 1717605 9 93 0.0 3.5 1.8 3.2 111 chr2L 1717494 intron Rim2 - chr2L 1717550 intron Rim2 - chr2L 1717605 exon Rim2 - chr2L_9_1715001 chr2L_1715001 RAL-712 31 chr2L 1744809 1744834 chr2L 1744887 1744911 7 78 3.0 2.0 2.5 2.0 102 chr2L 1744809 intron CG17646 + chr2L 1744860 intron CG17646 + chr2L 1744911 intron CG17646 + chr2L_7_1740001 chr2L_1740001 RAL-712 32 chr2L 1781122 1781133 chr2L 1781274 1781285 6 152 9.0 8.0 8.5 0.6 163 chr2L 1781122 intergenic not near genes chr2L 1781204 intergenic not near genes chr2L 1781285 intergenic not near genes chr2L_6_1780001 chr2L_1780001 RAL-712 33 chr2L 1836787 1836801 chr2L 1836895 1836909 5 108 4.0 0.0 2.0 1.7 122 chr2L 1836787 intron wry + chr2L 1836848 intron wry + chr2L 1836909 intron wry + chr2L_5_1835001 chr2L_1835001 RAL-712 34 chr2L 1868225 1868249 chr2L 1868431 1868453 8 205 3.5 1.5 2.5 2.3 228 chr2L 1868225 intron CG31663 - chr2L 1868339 intron CG31663 - chr2L 1868453 intron CG31663 - chr2L_8_1865001 chr2L_1865001 RAL-712 35 chr2L 1883435 1883444 chr2L 1884013 1884024 4 579 2.5 1.0 1.8 1.4 589 chr2L 1883435 intron CG15358 - chr2L 1883730 intron CG15358 - chr2L 1884024 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-712 36 chr2L 1948623 1948658 chr2L 1948730 1948764 7 107 0.0 1.0 0.5 4.7 141 chr2L 1948623 intergenic not near genes chr2L 1948694 intergenic not near genes chr2L 1948764 intergenic not near genes chr2L_7_1945001 chr2L_1945001 RAL-712 37 chr2L 1993200 1993212 chr2L 1993286 1993298 5 86 2.0 1.5 1.8 1.8 98 chr2L 1993200 intergenic not near genes chr2L 1993249 intergenic not near genes chr2L 1993298 intergenic not near genes chr2L_5_1990001 chr2L_1990001 RAL-712 38 chr2L 2068805 2068840 chr2L 2068989 2069024 10 184 2.5 2.5 2.5 2.9 219 chr2L 2068805 intron dpr3 - chr2L 2068914 intron dpr3 - chr2L 2069024 intron dpr3 - chr2L_10_2065001 chr2L_2065001 RAL-712 39 chr2L 2100377 2100397 chr2L 2109528 2109548 roo 8 9150 5.0 2.5 3.8 1.7 9171 chr2L 2100377 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-712 40 chr2L 2260807 2260833 chr2L 2260893 2260919 12 86 3.5 2.5 3.0 3.0 112 chr2L 2260807 intergenic not near genes chr2L 2260863 intergenic not near genes chr2L 2260919 intergenic not near genes chr2L_12_2260001 chr2L_2260001 RAL-712 41 chr2L 2262306 2262337 chr2L 2262383 2262414 8 77 2.0 0.0 1.0 4.0 108 chr2L 2262306 intergenic not near genes chr2L 2262360 intergenic not near genes chr2L 2262414 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-712 42 chr2L 2294046 2294071 chr2L 2299247 2299274 copia 9 5204 3.0 4.0 3.5 2.0 5228 chr2L 2294046 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299274 intergenic not near genes chr2L_9_2295001 chr2L_2295001 RAL-712 43 chr2L 2311072 2311088 chr2L 2311167 2311184 5 95 0.0 0.0 0.0 5.0 112 chr2L 2311072 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311184 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-712 44 chr2L 2364095 2364101 chr2L 2364171 2364175 5 76 2.5 7.0 4.8 0.9 80 chr2L 2364095 intron Rab5 - chr2L 2364135 intron Rab5 - chr2L 2364175 intron Rab5 - chr2L_5_2360001 chr2L_2360001 RAL-712 45 chr2L 2398928 2398962 chr2L 2399004 2399040 7 77 0.0 3.5 1.8 2.5 112 chr2L 2398928 intron VGlut + chr2L 2398984 intron VGlut + chr2L 2399040 intron VGlut + chr2L_7_2395001 chr2L_2395001 RAL-712 46 chr2L 2412178 2412208 chr2L 2412287 2412317 11 109 3.0 4.5 3.8 2.3 139 chr2L 2412178 intron CG18641 - chr2L 2412248 intron CG18641 - chr2L 2412317 intron CG18641 - chr2L_11_2410001 chr2L_2410001 RAL-712 47 chr2L 2498206 2498219 chr2L 2498286 2498299 4 80 1.5 3.5 2.5 1.1 93 chr2L 2498206 3` UTR oaf + chr2L 2498252 3` UTR oaf + chr2L 2498299 3` UTR oaf + chr2L_4_2495001 chr2L_2495001 RAL-712 48 chr2L 2565556 2565563 chr2L 2571629 2571636 297 5 6073 3.0 2.0 2.5 1.4 6080 chr2L 2565556 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571636 intron Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-712 49 chr2L 2626326 2626346 chr2L 2626835 2626855 4 509 4.0 3.0 3.5 0.9 529 chr2L 2626326 3` UTR CR45705 - chr2L 2626590 3` UTR CR45705 - chr2L 2626855 3` UTR CR45705 - chr2L_4_2625001 chr2L_2625001 RAL-712 50 chr2L 2661213 2661231 chr2L 2663051 2663069 I-element 6 1838 1.0 3.0 2.0 2.0 1856 chr2L 2661213 intergenic not near genes chr2L 2662141 intergenic not near genes chr2L 2663069 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-712 51 chr2L 2667628 2667653 chr2L 2667707 2667732 10 79 2.5 0.0 1.2 4.5 104 chr2L 2667628 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667732 intergenic not near genes chr2L_10_2665001 chr2L_2665001 RAL-712 52 chr2L 2715687 2715698 chr2L 2715763 2715773 5 75 2.0 2.5 2.2 1.6 86 chr2L 2715687 intron CG31690 + chr2L 2715730 intron CG31690 + chr2L 2715773 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-712 53 chr2L 2804242 2804261 chr2L 2804331 2804350 4 89 2.5 3.0 2.8 1.1 108 chr2L 2804242 intergenic not near genes chr2L 2804296 intergenic not near genes chr2L 2804350 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-712 54 chr2L 2826538 2826576 chr2L 2826629 2826661 11 89 0.0 1.5 0.8 6.1 123 chr2L 2826538 intron Duox - chr2L 2826600 intron Duox - chr2L 2826661 intron Duox - chr2L_11_2825001 chr2L_2825001 RAL-712 55 chr2L 2887296 2887309 chr2L 2887412 2887424 4 116 1.5 3.0 2.2 1.2 128 chr2L 2887296 intron lilli + chr2L 2887360 intron lilli + chr2L 2887424 intron lilli + chr2L_4_2885001 chr2L_2885001 RAL-712 56 chr2L 3073029 3073062 chr2L 3078232 3078265 copia 12 5203 2.0 3.0 2.5 3.4 5236 chr2L 3073029 intron toc - chr2L 3075647 intron toc - chr2L 3078265 intron toc - chr2L_12_3075001 chr2L_3075001 RAL-712 57 chr2L 3147274 3147300 chr2L 3147351 3147377 13 77 3.5 4.0 3.8 2.7 103 chr2L 3147274 3` UTR Mad - chr2L 3147326 3` UTR Mad - chr2L 3147377 3` UTR Mad - chr2L_13_3145001 chr2L_3145001 RAL-712 58 chr2L 3202748 3202772 chr2L 3210177 3210201 mdg1 7 7429 1.5 4.0 2.8 1.8 7453 chr2L 3202748 intergenic not near genes chr2L 3206474 intergenic not near genes chr2L 3210201 intergenic CR45336 + chr2L_7_3205001 chr2L_3205001 RAL-712 59 chr2L 3251499 3251520 chr2L 3259064 3259085 springer 8 7565 2.0 2.0 2.0 2.7 7586 chr2L 3251499 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259085 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-712 60 chr2L 3286746 3286773 chr2L 3286823 3286851 7 78 2.5 3.0 2.8 1.8 105 chr2L 3286746 intergenic not near genes chr2L 3286798 intergenic not near genes chr2L 3286851 intergenic not near genes chr2L_7_3285001 chr2L_3285001 RAL-712 61 chr2L 3291238 3291269 chr2L 3291318 3291349 9 79 1.0 1.0 1.0 4.5 111 chr2L 3291238 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-712 62 chr2L 3386238 3386267 chr2L 3386346 3386375 9 108 3.5 2.5 3.0 2.2 137 chr2L 3386238 intergenic not near genes chr2L 3386306 intergenic not near genes chr2L 3386375 intergenic CR45301 - chr2L_9_3385001 chr2L_3385001 RAL-712 63 chr2L 3388607 3388625 chr2L 3388848 3388866 pogo 4 241 3.5 1.0 2.2 1.2 259 chr2L 3388607 intergenic CG42460 - chr2L 3388736 intergenic CG42460 - chr2L 3388866 intergenic CG42460 -,CR44791 + chr2L_4_3385001 chr2L_3385001 RAL-712 64 chr2L 3437545 3437576 chr2L 3437870 3437901 6 324 1.0 2.0 1.5 2.4 356 chr2L 3437545 intergenic not near genes chr2L 3437723 intergenic not near genes chr2L 3437901 intergenic not near genes chr2L_6_3435001 chr2L_3435001 RAL-712 65 chr2L 3508347 3508376 chr2L 3508425 3508454 9 78 2.0 0.5 1.2 4.1 107 chr2L 3508347 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-712 66 chr2L 3548586 3548609 chr2L 3548665 3548688 6 79 1.0 2.5 1.8 2.1 102 chr2L 3548586 intergenic drm + chr2L 3548637 intergenic drm + chr2L 3548688 intergenic drm + chr2L_6_3545001 chr2L_3545001 RAL-712 67 chr2L 3584668 3584703 chr2L 3584745 3584780 5 77 2.0 0.5 1.2 2.3 112 chr2L 3584668 intergenic not near genes chr2L 3584724 intergenic not near genes chr2L 3584780 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-712 68 chr2L 3638145 3638176 chr2L 3638231 3638262 12 86 0.5 3.5 2.0 4.0 117 chr2L 3638145 intron for - chr2L 3638204 intron for - chr2L 3638262 intron for - chr2L_12_3635001 chr2L_3635001 RAL-712 69 chr2L 3649791 3649807 chr2L 3654990 3655009 copia 4 5201 0.0 0.0 0.0 4.0 5218 chr2L 3649791 intron for - chr2L 3652400 intron for - chr2L 3655009 intron for - chr2L_4_3650001 chr2L_3650001 RAL-712 70 chr2L 3702902 3702914 chr2L 3702988 3703000 4 86 1.0 2.5 1.8 1.4 98 chr2L 3702902 5` UTR CR44311 + chr2L 3702951 intergenic CR44311 + chr2L 3703000 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-712 71 chr2L 3783253 3783279 chr2L 3783344 3783370 8 91 3.5 1.5 2.5 2.3 117 chr2L 3783253 exon bowl + chr2L 3783312 3` UTR bowl + chr2L 3783370 3` UTR bowl + chr2L_8_3780001 chr2L_3780001 RAL-712 72 chr2L 3891893 3891907 chr2L 3891978 3891990 4 84 2.0 1.5 1.8 1.4 97 chr2L 3891893 intron capu - chr2L 3891942 intron capu - chr2L 3891990 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-712 73 chr2L 3906037 3906056 chr2L 3906183 3906201 7 145 2.5 3.5 3.0 1.8 164 chr2L 3906037 intron fred - chr2L 3906119 intron fred - chr2L 3906201 intron fred - chr2L_7_3905001 chr2L_3905001 RAL-712 74 chr2L 4066043 4066064 chr2L 4068868 4068889 Juan 4 2825 2.5 2.5 2.5 1.1 2846 chr2L 4066043 intron ed + chr2L 4067466 intron ed + chr2L 4068889 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-712 75 chr2L 4125251 4125262 chr2L 4125353 4125367 4 104 1.5 2.0 1.8 1.4 116 chr2L 4125251 intergenic not near genes chr2L 4125309 intergenic not near genes chr2L 4125367 intergenic not near genes chr2L_4_4125001 chr2L_4125001 RAL-712 76 chr2L 4138130 4138149 chr2L 4138210 4138229 7 79 7.0 1.0 4.0 1.4 99 chr2L 4138130 intergenic not near genes chr2L 4138180 intergenic not near genes chr2L 4138229 intergenic not near genes chr2L_7_4135001 chr2L_4135001 RAL-712 77 chr2L 4181292 4181305 chr2L 4183924 4183936 Burdock 7 2632 2.5 9.0 5.8 1.0 2644 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-712 78 chr2L 4224394 4224425 chr2L 4224472 4224502 8 79 0.0 2.5 1.2 3.6 108 chr2L 4224394 intergenic CG3702 - chr2L 4224448 intergenic CG3702 - chr2L 4224502 intergenic CG3702 - chr2L_8_4220001 chr2L_4220001 RAL-712 79 chr2L 4294002 4294006 chr2L 4294093 4294098 4 92 2.0 2.0 2.0 1.3 96 chr2L 4294002 intron tutl + chr2L 4294050 intron tutl + chr2L 4294098 intron tutl + chr2L_4_4290001 chr2L_4290001 RAL-712 80 chr2L 4601702 4601732 chr2L 4609143 4609173 mdg1 10 7441 4.0 1.0 2.5 2.9 7471 chr2L 4601702 intron dp - chr2L 4605438 intron dp - chr2L 4609173 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-712 81 chr2L 4622425 4622446 chr2L 4622511 4622532 4 86 4.0 1.5 2.8 1.1 107 chr2L 4622425 intergenic not near genes chr2L 4622478 intergenic not near genes chr2L 4622532 intergenic not near genes chr2L_4_4620001 chr2L_4620001 RAL-712 82 chr2L 4701835 4701867 chr2L 4701977 4702006 10 141 2.5 4.0 3.2 2.4 171 chr2L 4701835 intron CG34351 + chr2L 4701920 intron CG34351 + chr2L 4702006 intron CG34351 + chr2L_10_4700001 chr2L_4700001 RAL-712 83 chr2L 4748700 4748724 chr2L 4748779 4748803 8 79 1.5 6.0 3.8 1.7 103 chr2L 4748700 intron CG15630 - chr2L 4748752 intron CG15630 - chr2L 4748803 intron CG15630 - chr2L_8_4745001 chr2L_4745001 RAL-712 84 chr2L 4789920 4789953 chr2L 4790004 4790037 10 84 2.5 1.0 1.8 3.6 117 chr2L 4789920 intron CG15630 - chr2L 4789978 intron CG15630 - chr2L 4790037 intron CG15630 - chr2L_10_4785001 chr2L_4785001 RAL-712 85 chr2L 4819494 4819517 chr2L 4819617 4819639 7 122 3.5 1.0 2.2 2.2 145 chr2L 4819494 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819639 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-712 86 chr2L 4825717 4825739 chr2L 4825797 4825819 6 80 3.0 2.5 2.8 1.6 102 chr2L 4825717 intron CG15628 + chr2L 4825768 intron CG15628 + chr2L 4825819 intron CG15628 + chr2L_6_4825001 chr2L_4825001 RAL-712 87 chr2L 4849309 4849339 chr2L 4849392 4849421 11 83 1.5 1.5 1.5 4.4 112 chr2L 4849309 exon CG11927 + chr2L 4849365 3` UTR CG11927 + chr2L 4849421 3` UTR CG11927 + chr2L_11_4845001 chr2L_4845001 RAL-712 88 chr2L 4858468 4858481 chr2L 4858556 4858569 4 88 1.0 0.0 0.5 2.7 101 chr2L 4858468 intron pog + chr2L 4858518 intron pog + chr2L 4858569 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-712 89 chr2L 4862283 4862310 chr2L 4862359 4862386 8 76 7.5 3.5 5.5 1.2 103 chr2L 4862283 intron pog + chr2L 4862334 intron pog + chr2L 4862386 intron pog + chr2L_8_4860001 chr2L_4860001 RAL-712 90 chr2L 4879141 4879172 chr2L 4880375 4880406 14 1234 21.0 17.0 19.0 0.7 1265 chr2L 4879141 exon Cf2 - chr2L 4879774 intron Cf2 - chr2L 4880406 exon Cf2 - chr2L_14_4875001 chr2L_4875001 RAL-712 91 chr2L 4880422 4880449 chr2L 4881214 4881243 12 793 15.5 20.0 17.8 0.6 821 chr2L 4880422 exon Cf2 - chr2L 4880832 intron Cf2 - chr2L 4881243 exon Cf2 - chr2L_12_4880001 chr2L_4880001 RAL-712 92 chr2L 4918166 4918196 chr2L 4923239 4923269 jockey 9 5073 1.5 1.5 1.5 3.6 5103 chr2L 4918166 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923269 intron hoe1 - chr2L_9_4920001 chr2L_4920001 RAL-712 93 chr2L 4953515 4953532 chr2L 4953756 4953773 pogo 4 241 3.0 0.5 1.8 1.4 258 chr2L 4953515 intergenic Jon25Bii - chr2L 4953644 intergenic not near genes chr2L 4953773 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-712 94 chr2L 4993217 4993243 chr2L 4993301 4993327 6 84 1.5 3.0 2.2 1.9 110 chr2L 4993217 intergenic Rtnl1 - chr2L 4993272 intergenic Rtnl1 - chr2L 4993327 intergenic Rtnl1 - chr2L_6_4990001 chr2L_4990001 RAL-712 95 chr2L 5092413 5092443 chr2L 5092500 5092530 6 87 3.0 0.5 1.8 2.1 117 chr2L 5092413 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092530 intron pgant5 - chr2L_6_5090001 chr2L_5090001 RAL-712 96 chr2L 5117297 5117322 chr2L 5117379 5117404 9 82 3.0 0.0 1.5 3.6 107 chr2L 5117297 intron Msp300 + chr2L 5117350 intron Msp300 + chr2L 5117404 intron Msp300 + chr2L_9_5115001 chr2L_5115001 RAL-712 97 chr2L 5147723 5147755 chr2L 5147955 5147987 5 231 0.5 2.0 1.2 2.3 264 chr2L 5147723 intron Msp300 + chr2L 5147855 intron Msp300 + chr2L 5147987 intron Msp300 + chr2L_5_5145001 chr2L_5145001 RAL-712 98 chr2L 5200550 5200567 chr2L 5215798 5215815 5 15248 36.5 18.0 27.2 0.2 15265 chr2L 5200550 exon Msp300 + chr2L 5208182 exon Cyp28d2 + chr2L 5215815 exon CG14034 - chr2L_5_5205001 chr2L_5205001 RAL-712 99 chr2L 5242936 5242938 chr2L 16217660 16217660 9 10974724 18.5 12.0 15.2 0.6 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_9_10730001 chr2L_10730001 RAL-712 100 chr2L 5269993 5270021 chr2L 5270071 5270099 18 78 2.0 3.5 2.8 4.7 106 chr2L 5269993 intron,exon tkv -,Cyp4ac3 + chr2L 5270046 intron,exon tkv -,Cyp4ac3 + chr2L 5270099 intron,exon tkv -,Cyp4ac3 + chr2L_18_5270001 chr2L_5270001 RAL-712 101 chr2L 5378433 5378452 chr2L 5378512 5378523 5 77 1.5 0.0 0.8 2.8 90 chr2L 5378433 intergenic not near genes chr2L 5378478 intergenic not near genes chr2L 5378523 intergenic not near genes chr2L_5_5375001 chr2L_5375001 RAL-712 102 chr2L 5677187 5677221 chr2L 5677285 5677318 10 98 0.0 3.0 1.5 4.0 131 chr2L 5677187 intergenic not near genes chr2L 5677252 intergenic not near genes chr2L 5677318 intergenic not near genes chr2L_10_5675001 chr2L_5675001 RAL-712 103 chr2L 5685431 5685441 chr2L 5685509 5685519 6 78 6.5 2.0 4.2 1.2 88 chr2L 5685431 intergenic not near genes chr2L 5685475 intergenic not near genes chr2L 5685519 intergenic not near genes chr2L_6_5685001 chr2L_5685001 RAL-712 104 chr2L 5725211 5725235 chr2L 5725297 5725321 4 86 1.5 0.5 1.0 2.0 110 chr2L 5725211 5` UTR CG11030 + chr2L 5725266 intron CG11030 + chr2L 5725321 intron CG11030 + chr2L_4_5725001 chr2L_5725001 RAL-712 105 chr2L 5726219 5726243 chr2L 5726298 5726322 9 79 1.5 0.0 0.8 5.0 103 chr2L 5726219 intron CG11030 + chr2L 5726270 intron CG11030 + chr2L 5726322 intron CG11030 + chr2L_9_5725001 chr2L_5725001 RAL-712 106 chr2L 5777213 5777238 chr2L 5777302 5777327 7 89 2.0 4.5 3.2 1.7 114 chr2L 5777213 intron CG9171 - chr2L 5777270 intron CG9171 - chr2L 5777327 intron CG9171 - chr2L_7_5775001 chr2L_5775001 RAL-712 107 chr2L 5819682 5819703 chr2L 5819766 5819787 7 84 0.5 1.5 1.0 3.5 105 chr2L 5819682 intergenic not near genes chr2L 5819734 intergenic not near genes chr2L 5819787 intergenic not near genes chr2L_7_5815001 chr2L_5815001 RAL-712 108 chr2L 5827706 5827735 chr2L 5836714 5836743 roo 6 9008 3.0 2.0 2.5 1.7 9037 chr2L 5827706 intron TrissinR + chr2L 5832224 intron TrissinR + chr2L 5836743 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-712 109 chr2L 5897595 5897625 chr2L 5897678 5897708 8 83 5.5 2.5 4.0 1.6 113 chr2L 5897595 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897708 intergenic not near genes chr2L_8_5895001 chr2L_5895001 RAL-712 110 chr2L 5989046 5989060 chr2L 5989122 5989136 8 76 2.5 0.5 1.5 3.2 90 chr2L 5989046 intergenic ifc +,lid - chr2L 5989091 intergenic ifc +,lid - chr2L 5989136 intergenic lid -,ifc + chr2L_8_5985001 chr2L_5985001 RAL-712 111 chr2L 5993335 5993344 chr2L 5993426 5993435 5 91 5.5 2.5 4.0 1.0 100 chr2L 5993335 exon lid - chr2L 5993385 intron lid - chr2L 5993435 intron lid - chr2L_5_5990001 chr2L_5990001 RAL-712 112 chr2L 6007102 6007126 chr2L 6007178 6007202 4 76 0.5 0.0 0.2 3.3 100 chr2L 6007102 intergenic CG9098 -,Gal - chr2L 6007152 intergenic CG9098 -,Gal - chr2L 6007202 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-712 113 chr2L 6185035 6185065 chr2L 6185113 6185145 8 80 1.5 2.0 1.8 2.9 110 chr2L 6185035 intron CG34380 + chr2L 6185090 intron CG34380 + chr2L 6185145 intron CG34380 + chr2L_8_6185001 chr2L_6185001 RAL-712 114 chr2L 6185444 6185469 chr2L 6185522 6185547 7 78 3.0 2.5 2.8 1.8 103 chr2L 6185444 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185547 intron CG34380 + chr2L_7_6185001 chr2L_6185001 RAL-712 115 chr2L 6220134 6220158 chr2L 6220255 6220279 10 121 0.5 4.5 2.5 2.9 145 chr2L 6220134 intergenic not near genes chr2L 6220206 intergenic not near genes chr2L 6220279 intergenic not near genes chr2L_10_6220001 chr2L_6220001 RAL-712 116 chr2L 6283944 6283976 chr2L 6284055 6284087 5 111 0.5 1.5 1.0 2.5 143 chr2L 6283944 intron Ddr + chr2L 6284016 intron Ddr + chr2L 6284087 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-712 117 chr2L 6363153 6363183 chr2L 6366077 6366109 Burdock 10 2925 3.5 2.0 2.8 2.6 2956 chr2L 6363153 intergenic not near genes chr2L 6364631 intergenic not near genes chr2L 6366109 intergenic not near genes chr2L_10_6360001 chr2L_6360001 RAL-712 118 chr2L 6426853 6426881 chr2L 6445113 6445141 roo 8 18260 6.0 4.5 5.2 1.3 18288 chr2L 6426853 3` UTR CG9527 - chr2L 6435997 intron CG9527 - chr2L 6445141 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-712 119 chr2L 6544370 6544394 chr2L 6544462 6544486 7 92 3.5 2.0 2.8 1.8 116 chr2L 6544370 intron eya - chr2L 6544428 intron eya - chr2L 6544486 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-712 120 chr2L 6626892 6626915 chr2L 6626977 6627000 7 85 2.5 4.0 3.2 1.7 108 chr2L 6626892 intron Oatp26F - chr2L 6626946 intron Oatp26F - chr2L 6627000 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-712 121 chr2L 6740745 6740756 chr2L 6740832 6740843 5 87 0.0 7.5 3.8 1.0 98 chr2L 6740745 intergenic not near genes chr2L 6740794 intergenic not near genes chr2L 6740843 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-712 122 chr2L 6767471 6767507 chr2L 6767557 6767593 13 86 3.0 4.0 3.5 2.9 122 chr2L 6767471 exon CG11321 - chr2L 6767532 exon CG11321 - chr2L 6767593 exon CG11321 - chr2L_13_6765001 chr2L_6765001 RAL-712 123 chr2L 6876786 6876804 chr2L 6882977 6882994 diver 5 6191 2.5 2.5 2.5 1.4 6208 chr2L 6876786 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6882994 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-712 124 chr2L 7007413 7007431 chr2L 7007516 7007534 4 103 1.5 4.0 2.8 1.1 121 chr2L 7007413 intron uif - chr2L 7007474 intron uif - chr2L 7007534 intron uif - chr2L_4_7005001 chr2L_7005001 RAL-712 125 chr2L 7126861 7126877 chr2L 7126940 7126956 4 79 0.5 0.0 0.2 3.3 95 chr2L 7126861 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126956 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-712 126 chr2L 7165782 7165804 chr2L 7165863 7165885 5 81 2.5 0.5 1.5 2.0 103 chr2L 7165782 intergenic not near genes chr2L 7165834 intergenic not near genes chr2L 7165885 intergenic not near genes chr2L_5_7165001 chr2L_7165001 RAL-712 127 chr2L 7284619 7284632 chr2L 7284706 7284719 5 87 2.0 0.5 1.2 2.3 100 chr2L 7284619 intergenic not near genes chr2L 7284669 intergenic not near genes chr2L 7284719 intergenic not near genes chr2L_5_7280001 chr2L_7280001 RAL-712 128 chr2L 7301302 7301330 chr2L 7301384 7301412 11 82 3.0 2.5 2.8 2.9 110 chr2L 7301302 intergenic not near genes chr2L 7301357 intergenic not near genes chr2L 7301412 intergenic not near genes chr2L_11_7300001 chr2L_7300001 RAL-712 129 chr2L 7343324 7343358 chr2L 7350440 7350473 roo 7 7115 1.0 2.5 1.8 2.5 7149 chr2L 7343324 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-712 130 chr2L 7448109 7448136 chr2L 7448187 7448214 5 78 3.0 5.5 4.2 1.0 105 chr2L 7448109 5` UTR santa-maria - chr2L 7448162 5` UTR santa-maria - chr2L 7448214 5` UTR santa-maria - chr2L_5_7445001 chr2L_7445001 RAL-712 131 chr2L 7493679 7493702 chr2L 7493890 7493913 10 211 4.0 3.5 3.8 2.1 234 chr2L 7493679 intron Ziz - chr2L 7493796 intron Ziz - chr2L 7493913 intron Ziz - chr2L_10_7490001 chr2L_7490001 RAL-712 132 chr2L 7516165 7516195 chr2L 7516252 7516282 8 86 2.5 3.0 2.8 2.1 117 chr2L 7516165 intron RapGAP1 - chr2L 7516224 intron RapGAP1 - chr2L 7516282 intron RapGAP1 - chr2L_8_7515001 chr2L_7515001 RAL-712 133 chr2L 7539251 7539264 chr2L 7539336 7539350 4 86 1.5 1.5 1.5 1.6 99 chr2L 7539251 intron RapGAP1 - chr2L 7539300 intron RapGAP1 - chr2L 7539350 intron RapGAP1 - chr2L_4_7535001 chr2L_7535001 RAL-712 134 chr2L 7555219 7555234 chr2L 7555295 7555311 6 77 0.0 2.5 1.2 2.7 92 chr2L 7555219 intron RapGAP1 - chr2L 7555265 intron RapGAP1 - chr2L 7555311 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-712 135 chr2L 7568315 7568336 chr2L 7568390 7568413 7 77 2.0 4.0 3.0 1.8 98 chr2L 7568315 intron RapGAP1 - chr2L 7568364 intron RapGAP1 - chr2L 7568413 intron RapGAP1 - chr2L_7_7565001 chr2L_7565001 RAL-712 136 chr2L 7766628 7766635 chr2L 7766704 7766711 5 76 3.5 0.0 1.8 1.8 83 chr2L 7766628 intergenic not near genes chr2L 7766670 intergenic not near genes chr2L 7766711 intergenic not near genes chr2L_5_7765001 chr2L_7765001 RAL-712 137 chr2L 7841283 7841307 chr2L 7841469 7841493 9 186 2.5 2.0 2.2 2.8 210 chr2L 7841283 intergenic CG14537 + chr2L 7841388 intergenic CG14537 + chr2L 7841493 intergenic CG14537 + chr2L_9_7840001 chr2L_7840001 RAL-712 138 chr2L 7922748 7922771 chr2L 7922829 7922851 4 81 3.0 4.5 3.8 0.8 103 chr2L 7922748 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922851 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-712 139 chr2L 7959040 7959062 chr2L 7960451 7960473 pogo 7 1411 3.5 0.0 1.8 2.5 1433 chr2L 7959040 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960473 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-712 140 chr2L 7984955 7984966 chr2L 7985083 7985094 5 128 1.5 3.0 2.2 1.6 139 chr2L 7984955 intron CG7231 + chr2L 7985024 intron CG7231 + chr2L 7985094 intron CG7231 + chr2L_5_7985001 chr2L_7985001 RAL-712 141 chr2L 7997033 7997065 chr2L 7997133 7997165 6 100 1.5 2.5 2.0 2.0 132 chr2L 7997033 intron CG7227 - chr2L 7997099 intron CG7227 - chr2L 7997165 intron CG7227 - chr2L_6_7995001 chr2L_7995001 RAL-712 142 chr2L 8013614 8013634 chr2L 8018818 8018838 copia 7 5204 3.5 0.0 1.8 2.5 5224 chr2L 8013614 intron Tg + chr2L 8016226 intron Tg + chr2L 8018838 intron Tg + chr2L_7_8015001 chr2L_8015001 RAL-712 143 chr2L 8167144 8167178 chr2L 8167234 8167268 11 90 0.5 2.5 1.5 4.4 124 chr2L 8167144 intron Piezo + chr2L 8167206 intron Piezo + chr2L 8167268 intron Piezo + chr2L_11_8165001 chr2L_8165001 RAL-712 144 chr2L 8171274 8171294 chr2L 8171355 8171374 4 81 0.0 0.5 0.2 3.3 100 chr2L 8171274 intron Piezo + chr2L 8171324 intron Piezo + chr2L 8171374 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-712 145 chr2L 8184923 8184945 chr2L 8185013 8185036 6 91 2.5 4.5 3.5 1.3 113 chr2L 8184923 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185036 intron Piezo + chr2L_6_8180001 chr2L_8180001 RAL-712 146 chr2L 8258165 8258200 chr2L 8258262 8258297 10 97 0.5 0.5 0.5 6.7 132 chr2L 8258165 intergenic Btk29A -,mir-2b-1 - chr2L 8258231 intergenic Btk29A -,mir-2b-1 - chr2L 8258297 intergenic Btk29A -,mir-2b-1 - chr2L_10_8255001 chr2L_8255001 RAL-712 147 chr2L 8285019 8285036 chr2L 8285095 8285112 7 76 3.0 1.0 2.0 2.3 93 chr2L 8285019 intron Btk29A - chr2L 8285066 intron Btk29A - chr2L 8285112 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-712 148 chr2L 8286296 8286329 chr2L 8286383 8286428 4 93 1.5 0.0 0.8 2.2 132 chr2L 8286296 intron Btk29A - chr2L 8286362 intron Btk29A - chr2L 8286428 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-712 149 chr2L 8452419 8452446 chr2L 8461590 8461616 roo 9 9171 2.0 2.0 2.0 3.0 9197 chr2L 8452419 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461616 intron fu12 - chr2L_9_8455001 chr2L_8455001 RAL-712 150 chr2L 8461865 8461879 chr2L 8461946 8461960 5 81 0.5 1.0 0.8 2.8 95 chr2L 8461865 intron fu12 - chr2L 8461912 intron fu12 - chr2L 8461960 intron fu12 - chr2L_5_8460001 chr2L_8460001 RAL-712 151 chr2L 8538168 8538177 chr2L 8538243 8538253 4 76 4.0 0.0 2.0 1.3 85 chr2L 8538168 intron CG17834 + chr2L 8538210 intron CG17834 + chr2L 8538253 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-712 152 chr2L 8588552 8588567 chr2L 8588643 8588658 4 91 5.5 8.0 6.8 0.5 106 chr2L 8588552 intron Sema-1a + chr2L 8588605 intron Sema-1a + chr2L 8588658 intron Sema-1a + chr2L_4_8585001 chr2L_8585001 RAL-712 153 chr2L 8594463 8594498 chr2L 8601517 8601552 297 4 7054 1.0 0.5 0.8 2.2 7089 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601552 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-712 154 chr2L 8603018 8603034 chr2L 8603180 8603195 4 162 3.0 4.0 3.5 0.9 177 chr2L 8603018 intron Sema-1a + chr2L 8603106 intron Sema-1a + chr2L 8603195 intron Sema-1a + chr2L_4_8600001 chr2L_8600001 RAL-712 155 chr2L 8629002 8629028 chr2L 8629086 8629112 5 83 2.0 2.5 2.2 1.6 110 chr2L 8629002 intron Sema-1a + chr2L 8629057 intron Sema-1a + chr2L 8629112 intron Sema-1a + chr2L_5_8625001 chr2L_8625001 RAL-712 156 chr2L 8719214 8719334 chr2L 8719291 8719483 7 139 0.5 0.5 0.5 4.7 269 chr2L 8719214 intron raw - chr2L 8719348 intron raw - chr2L 8719483 intron raw - chr2L_7_8715001 chr2L_8715001 RAL-712 157 chr2L 8723117 8723146 chr2L 8731494 8731523 Tirant 9 8377 2.0 4.0 3.0 2.2 8406 chr2L 8723117 intron raw - chr2L 8727320 intron raw - chr2L 8731523 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-712 158 chr2L 8750766 8750773 chr2L 8750857 8750864 5 91 0.0 7.0 3.5 1.1 98 chr2L 8750766 intergenic not near genes chr2L 8750815 intergenic not near genes chr2L 8750864 intergenic not near genes chr2L_5_8750001 chr2L_8750001 RAL-712 159 chr2L 8799801 8799823 chr2L 8799916 8799939 6 115 2.5 2.5 2.5 1.7 138 chr2L 8799801 intergenic not near genes chr2L 8799870 intergenic not near genes chr2L 8799939 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-712 160 chr2L 8886683 8886705 chr2L 8886770 8886791 5 87 2.5 3.0 2.8 1.3 108 chr2L 8886683 intergenic CR44415 - chr2L 8886737 intergenic CR44415 - chr2L 8886791 intergenic CR44415 - chr2L_5_8885001 chr2L_8885001 RAL-712 161 chr2L 8904378 8904392 chr2L 8904592 8904605 5 214 1.0 3.0 2.0 1.7 227 chr2L 8904378 intron CG34398 + chr2L 8904492 intron CG34398 + chr2L 8904605 intron CG34398 + chr2L_5_8900001 chr2L_8900001 RAL-712 162 chr2L 8939672 8939700 chr2L 8939752 8939780 5 80 1.0 3.5 2.2 1.6 108 chr2L 8939672 3` UTR Tsp29Fb + chr2L 8939726 3` UTR Tsp29Fb + chr2L 8939780 intergenic CG9510 -,Tsp29Fb + chr2L_5_8935001 chr2L_8935001 RAL-712 163 chr2L 9000280 9000304 chr2L 9007789 9007814 roo 6 7510 3.0 2.0 2.5 1.7 7534 chr2L 9000280 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007814 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-712 164 chr2L 9023162 9023186 chr2L 9023259 9023283 4 96 2.0 5.0 3.5 0.9 121 chr2L 9023162 intergenic not near genes chr2L 9023222 intergenic not near genes chr2L 9023283 intergenic not near genes chr2L_4_9020001 chr2L_9020001 RAL-712 165 chr2L 9040032 9040059 chr2L 9040119 9040146 9 87 2.5 2.5 2.5 2.6 114 chr2L 9040032 intergenic not near genes chr2L 9040089 intergenic not near genes chr2L 9040146 intergenic not near genes chr2L_9_9040001 chr2L_9040001 RAL-712 166 chr2L 9044108 9044128 chr2L 9044206 9044235 4 103 0.0 2.0 1.0 2.0 127 chr2L 9044108 intergenic not near genes chr2L 9044172 intergenic not near genes chr2L 9044235 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-712 167 chr2L 9084339 9084339 chr2L 16217660 16217660 4 7133321 8.5 12.0 10.2 0.4 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-712 168 chr2L 9095571 9095592 chr2L 9095658 9095679 6 87 5.5 4.5 5.0 1.0 108 chr2L 9095571 intergenic not near genes chr2L 9095625 intergenic not near genes chr2L 9095679 intergenic not near genes chr2L_6_9095001 chr2L_9095001 RAL-712 169 chr2L 9115066 9115098 chr2L 9115251 9115281 8 186 1.5 3.0 2.2 2.5 215 chr2L 9115066 intergenic not near genes chr2L 9115174 intergenic not near genes chr2L 9115281 intergenic not near genes chr2L_8_9115001 chr2L_9115001 RAL-712 170 chr2L 9202056 9202087 chr2L 9202132 9202163 15 75 2.0 3.5 2.8 3.9 107 chr2L 9202056 intron tai + chr2L 9202110 intron tai + chr2L 9202163 intron tai + chr2L_15_9200001 chr2L_9200001 RAL-712 171 chr2L 9278890 9278917 chr2L 9278980 9279007 6 90 1.0 0.0 0.5 4.0 117 chr2L 9278890 intron Ggamma30A + chr2L 9278948 intron Ggamma30A + chr2L 9279007 intron Ggamma30A + chr2L_6_9275001 chr2L_9275001 RAL-712 172 chr2L 9380247 9380252 chr2L 9380342 9380347 4 95 4.0 0.0 2.0 1.3 100 chr2L 9380247 exon Shawl - chr2L 9380297 intron Shawl - chr2L 9380347 intron Shawl - chr2L_4_9380001 chr2L_9380001 RAL-712 173 chr2L 9391591 9391608 chr2L 9391701 9391718 6 110 2.5 2.5 2.5 1.7 127 chr2L 9391591 intron Shawl - chr2L 9391654 intron Shawl - chr2L 9391718 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-712 174 chr2L 9393497 9393523 chr2L 9396464 9396490 jockey 8 2967 0.0 3.5 1.8 2.9 2993 chr2L 9393497 intron Shawl - chr2L 9394994 intron Shawl - chr2L 9396490 intron Shawl - chr2L_8_9390001 chr2L_9390001 RAL-712 175 chr2L 9417711 9417727 chr2L 9418026 9418042 6 315 1.0 2.5 1.8 2.1 331 chr2L 9417711 intron Mco1 + chr2L 9417876 intron Mco1 + chr2L 9418042 intron Mco1 + chr2L_6_9415001 chr2L_9415001 RAL-712 176 chr2L 9454976 9454992 chr2L 9455078 9455094 5 102 3.5 0.5 2.0 1.7 118 chr2L 9454976 intron numb + chr2L 9455035 intron numb + chr2L 9455094 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-712 177 chr2L 9456931 9456954 chr2L 9457012 9457035 4 81 1.5 1.0 1.2 1.8 104 chr2L 9456931 intron numb + chr2L 9456983 intron numb + chr2L 9457035 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-712 178 chr2L 9460759 9460767 chr2L 9460845 9460853 4 86 5.0 0.0 2.5 1.1 94 chr2L 9460759 intron numb + chr2L 9460806 intron numb + chr2L 9460853 intron numb + chr2L_4_9460001 chr2L_9460001 RAL-712 179 chr2L 9490520 9490551 chr2L 9490600 9490631 11 80 1.5 5.5 3.5 2.4 111 chr2L 9490520 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490631 intergenic not near genes chr2L_11_9490001 chr2L_9490001 RAL-712 180 chr2L 9619496 9619516 chr2L 9619833 9619853 4 337 2.0 0.0 1.0 2.0 357 chr2L 9619496 intron GlcAT-S + chr2L 9619674 intron GlcAT-S + chr2L 9619853 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-712 181 chr2L 9775995 9776005 chr2L 9776077 9776087 6 82 1.5 2.5 2.0 2.0 92 chr2L 9775995 intergenic not near genes chr2L 9776041 intergenic not near genes chr2L 9776087 intergenic not near genes chr2L_6_9775001 chr2L_9775001 RAL-712 182 chr2L 9972865 9972888 chr2L 9972951 9972974 5 86 0.5 2.5 1.5 2.0 109 chr2L 9972865 intergenic not near genes chr2L 9972920 intergenic not near genes chr2L 9972974 intergenic not near genes chr2L_5_9970001 chr2L_9970001 RAL-712 183 chr2L 9973727 9973759 chr2L 9980844 9980878 HMS-Beagle 13 7118 3.5 1.0 2.2 4.1 7151 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_13_9975001 chr2L_9975001 RAL-712 184 chr2L 9986350 9986384 chr2L 9986445 9986479 9 95 1.0 3.5 2.2 2.8 129 chr2L 9986350 intron bib + chr2L 9986414 intron bib + chr2L 9986479 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-712 185 chr2L 10024951 10024978 chr2L 10025059 10025085 5 107 1.0 1.0 1.0 2.5 134 chr2L 10024951 intergenic not near genes chr2L 10025018 intergenic not near genes chr2L 10025085 intergenic not near genes chr2L_5_10025001 chr2L_10025001 RAL-712 186 chr2L 10051727 10051749 chr2L 10051812 10051834 13 84 5.0 5.5 5.2 2.1 107 chr2L 10051727 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_13_10050001 chr2L_10050001 RAL-712 187 chr2L 10095632 10095661 chr2L 10095711 10095741 9 80 1.5 3.0 2.2 2.8 109 chr2L 10095632 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095741 intron CG44153 - chr2L_9_10095001 chr2L_10095001 RAL-712 188 chr2L 10176550 10176572 chr2L 10176831 10176855 5 283 1.0 2.0 1.5 2.0 305 chr2L 10176550 intron CG44153 - chr2L 10176702 intron CG44153 - chr2L 10176855 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-712 189 chr2L 10447075 10447095 chr2L 10447185 10447205 7 110 0.0 2.0 1.0 3.5 130 chr2L 10447075 intron loh + chr2L 10447140 intron loh + chr2L 10447205 intron loh + chr2L_7_10445001 chr2L_10445001 RAL-712 190 chr2L 10515362 10515390 chr2L 10515455 10515483 5 93 3.0 3.5 3.2 1.2 121 chr2L 10515362 intron,intron CG45083 -,Fatp - chr2L 10515422 intron,intron CG45083 -,Fatp - chr2L 10515483 intron,intron CG45083 -,Fatp - chr2L_5_10515001 chr2L_10515001 RAL-712 191 chr2L 10572714 10572735 chr2L 10572794 10572815 5 80 5.0 4.0 4.5 0.9 101 chr2L 10572714 intron Trim9 + chr2L 10572764 intron Trim9 + chr2L 10572815 intron Trim9 + chr2L_5_10570001 chr2L_10570001 RAL-712 192 chr2L 10580799 10580818 chr2L 10580880 10580899 6 81 2.0 2.5 2.2 1.9 100 chr2L 10580799 intron Trim9 + chr2L 10580849 intron Trim9 + chr2L 10580899 intron Trim9 + chr2L_6_10580001 chr2L_10580001 RAL-712 193 chr2L 10592847 10592865 chr2L 10600509 10600527 opus 4 7662 1.0 2.0 1.5 1.6 7680 chr2L 10592847 intron Trim9 + chr2L 10596687 intron Trim9 + chr2L 10600527 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-712 194 chr2L 10640641 10640671 chr2L 10640730 10640760 9 89 1.5 2.0 1.8 3.2 119 chr2L 10640641 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_9_10640001 chr2L_10640001 RAL-712 195 chr2L 10698136 10698160 chr2L 10698219 10698241 7 83 1.5 4.5 3.0 1.8 105 chr2L 10698136 5` UTR CR44181 + chr2L 10698188 5` UTR CR44181 + chr2L 10698241 intergenic CR44181 +,CG7300 - chr2L_7_10695001 chr2L_10695001 RAL-712 196 chr2L 10704920 10704929 chr2L 10705015 10705024 6 95 3.0 3.0 3.0 1.5 104 chr2L 10704920 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705024 intron Lip2 - chr2L_6_10700001 chr2L_10700001 RAL-712 197 chr2L 10785058 10785093 chr2L 10785134 10785169 8 76 1.5 3.5 2.5 2.3 111 chr2L 10785058 intron CG31869 - chr2L 10785114 intron CG31869 - chr2L 10785169 intron CG31869 - chr2L_8_10785001 chr2L_10785001 RAL-712 198 chr2L 10862852 10862876 chr2L 10864466 10864490 Rt1c 8 1614 1.0 5.0 3.0 2.0 1638 chr2L 10862852 3` UTR CR43807 - chr2L 10863671 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-712 199 chr2L 10946953 10946977 chr2L 10956168 10956192 roo 6 9215 6.0 10.0 8.0 0.7 9239 chr2L 10946953 intron dpr2 - chr2L 10951572 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-712 200 chr2L 11211141 11211164 chr2L 11211227 11211248 5 85 1.0 2.0 1.5 2.0 107 chr2L 11211141 intron ab + chr2L 11211194 intron ab + chr2L 11211248 intron ab + chr2L_5_11210001 chr2L_11210001 RAL-712 201 chr2L 11224057 11224088 chr2L 11224168 11224199 6 111 2.5 2.5 2.5 1.7 142 chr2L 11224057 intron ab + chr2L 11224128 intron ab + chr2L 11224199 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-712 202 chr2L 11240502 11240531 chr2L 11240628 11240656 8 126 4.0 2.5 3.2 1.9 154 chr2L 11240502 intron ab + chr2L 11240579 intron ab + chr2L 11240656 intron ab + chr2L_8_11240001 chr2L_11240001 RAL-712 203 chr2L 11394268 11394296 chr2L 11394352 11394380 13 84 4.0 1.5 2.8 3.4 112 chr2L 11394268 intergenic not near genes chr2L 11394324 intergenic not near genes chr2L 11394380 intergenic not near genes chr2L_13_11390001 chr2L_11390001 RAL-712 204 chr2L 11455561 11455592 chr2L 11455646 11455676 11 85 4.5 2.5 3.5 2.4 115 chr2L 11455561 intergenic not near genes chr2L 11455618 intergenic not near genes chr2L 11455676 intergenic not near genes chr2L_11_11455001 chr2L_11455001 RAL-712 205 chr2L 11524134 11524164 chr2L 11524228 11524260 12 96 5.0 2.0 3.5 2.7 126 chr2L 11524134 exon CG31705 - chr2L 11524197 exon CG31705 - chr2L 11524260 exon CG31705 - chr2L_12_11520001 chr2L_11520001 RAL-712 206 chr2L 11537977 11537999 chr2L 11538070 11538092 5 93 2.0 2.5 2.2 1.6 115 chr2L 11537977 intergenic not near genes chr2L 11538034 intergenic not near genes chr2L 11538092 intergenic not near genes chr2L_5_11535001 chr2L_11535001 RAL-712 207 chr2L 11563640 11563654 chr2L 11568843 11568858 copia 7 5204 2.5 3.5 3.0 1.8 5218 chr2L 11563640 intergenic not near genes chr2L 11566249 intergenic not near genes chr2L 11568858 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-712 208 chr2L 11608929 11608948 chr2L 11609011 11609030 4 82 0.0 2.0 1.0 2.0 101 chr2L 11608929 intron kek2 + chr2L 11608980 intron kek2 + chr2L 11609030 intron kek2 + chr2L_4_11605001 chr2L_11605001 RAL-712 209 chr2L 11704639 11704658 chr2L 11704715 11704734 5 74 3.0 0.5 1.8 1.8 95 chr2L 11704639 intergenic not near genes chr2L 11704686 intergenic not near genes chr2L 11704734 intergenic not near genes chr2L_5_11700001 chr2L_11700001 RAL-712 210 chr2L 11713508 11713533 chr2L 11720976 11721001 blood 5 7468 3.5 4.0 3.8 1.0 7493 chr2L 11713508 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721001 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-712 211 chr2L 11820432 11820468 chr2L 11820513 11820549 10 81 1.0 2.0 1.5 4.0 117 chr2L 11820432 intron Pde1c - chr2L 11820490 intron Pde1c - chr2L 11820549 intron Pde1c - chr2L_10_11820001 chr2L_11820001 RAL-712 212 chr2L 11854711 11854720 chr2L 11854886 11854895 5 175 4.0 1.0 2.5 1.4 184 chr2L 11854711 intron Pde1c - chr2L 11854803 intron Pde1c - chr2L 11854895 intron Pde1c - chr2L_5_11850001 chr2L_11850001 RAL-712 213 chr2L 12157609 12157641 chr2L 12157688 12157719 7 79 1.0 2.0 1.5 2.8 110 chr2L 12157609 intron CG31760 + chr2L 12157664 intron CG31760 + chr2L 12157719 intron CG31760 + chr2L_7_12155001 chr2L_12155001 RAL-712 214 chr2L 12262838 12262870 chr2L 12262922 12262952 4 84 0.5 3.5 2.0 1.3 114 chr2L 12262838 intron aret + chr2L 12262895 intron aret + chr2L 12262952 intron aret + chr2L_4_12260001 chr2L_12260001 RAL-712 215 chr2L 12266098 12266130 chr2L 12266180 12266212 5 82 1.0 0.5 0.8 2.8 114 chr2L 12266098 intron aret + chr2L 12266155 intron aret + chr2L 12266212 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-712 216 chr2L 12272164 12272187 chr2L 12272240 12272263 8 76 1.5 1.0 1.2 3.6 99 chr2L 12272164 intron aret + chr2L 12272214 intron aret + chr2L 12272263 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-712 217 chr2L 12347370 12347384 chr2L 12347461 12347474 5 89 2.5 0.0 1.2 2.3 104 chr2L 12347370 intron bru-2 + chr2L 12347422 intron bru-2 + chr2L 12347474 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-712 218 chr2L 12487890 12487918 chr2L 12487970 12487999 11 81 3.5 3.0 3.2 2.6 109 chr2L 12487890 intron bun - chr2L 12487944 intron bun - chr2L 12487999 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-712 219 chr2L 12515651 12515677 chr2L 12515818 12515844 6 167 0.5 3.0 1.8 2.1 193 chr2L 12515651 intron bun - chr2L 12515748 intron bun - chr2L 12515844 intron bun - chr2L_6_12515001 chr2L_12515001 RAL-712 220 chr2L 12529246 12529443 chr2L 12529379 12529519 6 86 1.5 1.5 1.5 2.4 273 chr2L 12529246 intron bun - chr2L 12529382 intron bun - chr2L 12529519 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-712 221 chr2L 12558325 12558353 chr2L 12565454 12565482 HMS-Beagle 12 7129 2.0 5.0 3.5 2.7 7157 chr2L 12558325 intergenic not near genes chr2L 12561904 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_12_12560001 chr2L_12560001 RAL-712 222 chr2L 12652942 12652973 chr2L 12653122 12653153 8 180 4.0 1.0 2.5 2.3 211 chr2L 12652942 intergenic not near genes chr2L 12653048 intergenic not near genes chr2L 12653153 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-712 223 chr2L 12731056 12731090 chr2L 12735823 12735857 F-element 9 4767 3.5 2.0 2.8 2.4 4801 chr2L 12731056 intron MRP + chr2L 12733456 intron MRP + chr2L 12735857 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-712 224 chr2L 12736335 12736358 chr2L 12736423 12736445 6 88 0.0 1.0 0.5 4.0 110 chr2L 12736335 intron MRP + chr2L 12736390 intron MRP + chr2L 12736445 intron MRP + chr2L_6_12735001 chr2L_12735001 RAL-712 225 chr2L 12739177 12739192 chr2L 12743958 12743973 Doc 6 4781 3.0 2.0 2.5 1.7 4796 chr2L 12739177 exon MRP + chr2L 12741575 intron MRP + chr2L 12743973 intron MRP + chr2L_6_12740001 chr2L_12740001 RAL-712 226 chr2L 12791605 12791633 chr2L 12795280 12795308 F-element 5 3675 4.5 1.0 2.8 1.3 3703 chr2L 12791605 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-712 227 chr2L 12861693 12861721 chr2L 12863160 12863182 hobo 6 1466 3.5 2.5 3.0 1.5 1489 chr2L 12861693 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-712 228 chr2L 12894029 12894039 chr2L 12895493 12895506 hobo 4 1466 5.0 7.0 6.0 0.6 1477 chr2L 12894029 intergenic not near genes chr2L 12894768 intergenic not near genes chr2L 12895506 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-712 229 chr2L 12933852 12933876 chr2L 12941318 12941339 blood 7 7466 5.0 3.0 4.0 1.4 7487 chr2L 12933852 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941339 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-712 230 chr2L 13036247 13036272 chr2L 13036489 13036514 X-element 5 242 1.0 4.0 2.5 1.4 267 chr2L 13036247 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036514 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-712 231 chr2L 13093093 13093100 chr2L 13093171 13093178 5 78 5.0 4.5 4.8 0.9 85 chr2L 13093093 intergenic not near genes chr2L 13093136 intergenic not near genes chr2L 13093178 intergenic not near genes chr2L_5_13090001 chr2L_13090001 RAL-712 232 chr2L 13112276 13112308 chr2L 13112395 13112426 8 119 1.5 3.0 2.2 2.5 150 chr2L 13112276 intergenic not near genes chr2L 13112351 intergenic not near genes chr2L 13112426 intergenic not near genes chr2L_8_13110001 chr2L_13110001 RAL-712 233 chr2L 13215380 13215414 chr2L 13215655 13215688 8 275 2.5 1.0 1.8 2.9 308 chr2L 13215380 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215534 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215688 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_8_13215001 chr2L_13215001 RAL-712 234 chr2L 13266380 13266404 chr2L 13266468 13266492 4 88 3.0 1.5 2.2 1.2 112 chr2L 13266380 intron CG44085 + chr2L 13266436 intron CG44085 + chr2L 13266492 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-712 235 chr2L 13422332 13422364 chr2L 13422423 13422454 11 91 1.0 2.0 1.5 4.4 122 chr2L 13422332 intron CG42784 + chr2L 13422393 intron CG42784 + chr2L 13422454 intron CG42784 + chr2L_11_13420001 chr2L_13420001 RAL-712 236 chr2L 13622150 13622171 chr2L 13622249 13622270 9 98 1.5 0.5 1.0 4.5 120 chr2L 13622150 intron kuz + chr2L 13622210 intron kuz + chr2L 13622270 intron kuz + chr2L_9_13620001 chr2L_13620001 RAL-712 237 chr2L 13761812 13761835 chr2L 13762923 13762946 Doc 8 1111 2.0 4.0 3.0 2.0 1134 chr2L 13761812 intron TM9SF4 + chr2L 13762379 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-712 238 chr2L 13853085 13853118 chr2L 13862234 13862267 roo 10 9149 0.5 2.5 1.5 4.0 9182 chr2L 13853085 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_10_13855001 chr2L_13855001 RAL-712 239 chr2L 13918820 13918843 chr2L 13918907 13918930 6 87 1.5 1.5 1.5 2.4 110 chr2L 13918820 intron Ance-3 + chr2L 13918875 intron Ance-3 + chr2L 13918930 intron Ance-3 + chr2L_6_13915001 chr2L_13915001 RAL-712 240 chr2L 13988285 13988379 chr2L 13988372 13988460 8 85 0.0 0.0 0.0 8.0 175 chr2L 13988285 intron rk - chr2L 13988372 intron rk - chr2L 13988460 intron rk - chr2L_8_13985001 chr2L_13985001 RAL-712 241 chr2L 14116889 14116909 chr2L 14117155 14117175 6 266 4.0 2.0 3.0 1.5 286 chr2L 14116889 intergenic not near genes chr2L 14117032 intergenic not near genes chr2L 14117175 intergenic not near genes chr2L_6_14115001 chr2L_14115001 RAL-712 242 chr2L 14120757 14120781 chr2L 14120858 14120886 7 104 1.0 3.0 2.0 2.3 129 chr2L 14120757 intergenic not near genes chr2L 14120822 intergenic not near genes chr2L 14120886 intergenic not near genes chr2L_7_14120001 chr2L_14120001 RAL-712 243 chr2L 14148406 14148694 chr2L 14148578 14148812 4 145 1.0 2.0 1.5 1.6 406 chr2L 14148406 intron CG17341 + chr2L 14148609 intron CG17341 + chr2L 14148812 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-712 244 chr2L 14369130 14369163 chr2L 14369246 14369277 7 115 1.0 3.5 2.2 2.2 147 chr2L 14369130 intergenic not near genes chr2L 14369204 intergenic not near genes chr2L 14369277 intergenic not near genes chr2L_7_14365001 chr2L_14365001 RAL-712 245 chr2L 14564199 14564228 chr2L 14564275 14564304 6 75 2.0 4.5 3.2 1.4 105 chr2L 14564199 intergenic CG3473 - chr2L 14564252 intergenic not near genes chr2L 14564304 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-712 246 chr2L 14613433 14613448 chr2L 14613734 14613749 6 300 4.5 2.0 3.2 1.4 316 chr2L 14613433 intron,5` UTR osp -,CR43411 + chr2L 14613591 intron,5` UTR osp -,CR43411 + chr2L 14613749 intron osp - chr2L_6_14610001 chr2L_14610001 RAL-712 247 chr2L 14621381 14621404 chr2L 14621481 14621502 6 100 2.5 3.0 2.8 1.6 121 chr2L 14621381 intron osp - chr2L 14621442 intron osp - chr2L 14621502 intron osp - chr2L_6_14620001 chr2L_14620001 RAL-712 248 chr2L 14642571 14642600 chr2L 14651734 14651763 roo 8 9163 2.0 1.5 1.8 2.9 9192 chr2L 14642571 intron osp - chr2L 14647167 intron osp - chr2L 14651763 intron osp - chr2L_8_14645001 chr2L_14645001 RAL-712 249 chr2L 14664585 14664604 chr2L 14665899 14665918 7 1314 11.5 23.5 17.5 0.4 1333 chr2L 14664585 intron osp - chr2L 14665252 intron osp - chr2L 14665918 intron osp - chr2L_7_14665001 chr2L_14665001 RAL-712 250 chr2L 14745459 14745485 chr2L 14745540 14745566 4 82 1.5 1.5 1.5 1.6 107 chr2L 14745459 3` UTR CR45460 - chr2L 14745512 3` UTR CR45460 - chr2L 14745566 intergenic CR45460 -,CR45459 +,CG42587 - chr2L_4_14745001 chr2L_14745001 RAL-712 251 chr2L 14775956 14775978 chr2L 14776033 14776055 6 77 2.0 1.0 1.5 2.4 99 chr2L 14775956 intergenic not near genes chr2L 14776006 intergenic not near genes chr2L 14776055 intergenic not near genes chr2L_6_14775001 chr2L_14775001 RAL-712 252 chr2L 14803879 14803906 chr2L 14809081 14809109 copia 13 5203 4.0 1.0 2.5 3.7 5230 chr2L 14803879 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809109 intergenic not near genes chr2L_13_14805001 chr2L_14805001 RAL-712 253 chr2L 14923102 14923133 chr2L 14923182 14923213 8 80 2.5 1.0 1.8 2.9 111 chr2L 14923102 intron CG42313 - chr2L 14923158 intron CG42313 - chr2L 14923213 intron CG42313 - chr2L_8_14920001 chr2L_14920001 RAL-712 254 chr2L 15003556 15003571 chr2L 15003640 15003653 6 84 3.0 4.5 3.8 1.2 97 chr2L 15003556 intergenic not near genes chr2L 15003604 intergenic not near genes chr2L 15003653 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-712 255 chr2L 15044707 15044737 chr2L 15044783 15044813 5 76 2.0 0.0 1.0 2.5 106 chr2L 15044707 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044813 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-712 256 chr2L 15339982 15340006 chr2L 15340058 15340087 8 82 4.0 1.0 2.5 2.3 105 chr2L 15339982 intergenic not near genes chr2L 15340034 intergenic not near genes chr2L 15340087 intergenic not near genes chr2L_8_15340001 chr2L_15340001 RAL-712 257 chr2L 15343544 15343562 chr2L 15343628 15343647 5 84 1.0 0.0 0.5 3.3 103 chr2L 15343544 intergenic not near genes chr2L 15343596 intergenic not near genes chr2L 15343647 intergenic not near genes chr2L_5_15340001 chr2L_15340001 RAL-712 258 chr2L 15355722 15355742 chr2L 15355800 15355820 5 78 3.0 3.5 3.2 1.2 98 chr2L 15355722 intergenic not near genes chr2L 15355771 intergenic not near genes chr2L 15355820 intergenic not near genes chr2L_5_15355001 chr2L_15355001 RAL-712 259 chr2L 15375835 15375839 chr2L 15375947 15375951 4 112 2.0 2.0 2.0 1.3 116 chr2L 15375835 intergenic not near genes chr2L 15375893 intergenic not near genes chr2L 15375951 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-712 260 chr2L 15446049 15446083 chr2L 15453518 15453551 blood 10 7468 2.5 2.5 2.5 2.9 7502 chr2L 15446049 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453551 intergenic not near genes chr2L_10_15445001 chr2L_15445001 RAL-712 261 chr2L 15488568 15488595 chr2L 15488647 15488674 6 79 1.5 5.0 3.2 1.4 106 chr2L 15488568 intergenic not near genes chr2L 15488621 intergenic not near genes chr2L 15488674 intergenic not near genes chr2L_6_15485001 chr2L_15485001 RAL-712 262 chr2L 15500830 15500850 chr2L 15500907 15500926 7 77 4.0 2.5 3.2 1.7 96 chr2L 15500830 intron lace + chr2L 15500878 intron lace + chr2L 15500926 intron lace + chr2L_7_15500001 chr2L_15500001 RAL-712 263 chr2L 15514319 15514329 chr2L 15514403 15514413 5 84 5.0 10.0 7.5 0.6 94 chr2L 15514319 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514413 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-712 264 chr2L 15535885 15535918 chr2L 15535974 15536008 15 90 1.5 1.5 1.5 6.0 123 chr2L 15535885 intergenic not near genes chr2L 15535946 intergenic not near genes chr2L 15536008 intergenic not near genes chr2L_15_15535001 chr2L_15535001 RAL-712 265 chr2L 15542433 15542454 chr2L 15542528 15542548 6 95 2.0 3.0 2.5 1.7 115 chr2L 15542433 intergenic not near genes chr2L 15542490 intergenic not near genes chr2L 15542548 intergenic not near genes chr2L_6_15540001 chr2L_15540001 RAL-712 266 chr2L 15887716 15887745 chr2L 15887849 15887878 6 133 2.0 2.0 2.0 2.0 162 chr2L 15887716 intergenic not near genes chr2L 15887797 intergenic not near genes chr2L 15887878 intergenic not near genes chr2L_6_15885001 chr2L_15885001 RAL-712 267 chr2L 15947640 15947671 chr2L 15947792 15947823 8 152 1.5 2.0 1.8 2.9 183 chr2L 15947640 intron beat-Ib - chr2L 15947732 intron beat-Ib - chr2L 15947823 intron beat-Ib - chr2L_8_15945001 chr2L_15945001 RAL-712 268 chr2L 15956024 15956059 chr2L 15957491 15957526 hobo 11 1466 6.5 2.0 4.2 2.1 1502 chr2L 15956024 intron beat-Ib - chr2L 15956775 intron beat-Ib - chr2L 15957526 intron beat-Ib - chr2L_11_15955001 chr2L_15955001 RAL-712 269 chr2L 16027393 16027423 chr2L 16027469 16027499 7 75 1.5 1.5 1.5 2.8 106 chr2L 16027393 intron beat-Ic + chr2L 16027446 intron beat-Ic + chr2L 16027499 intron beat-Ic + chr2L_7_16025001 chr2L_16025001 RAL-712 270 chr2L 16058134 16058152 chr2L 16058275 16058293 5 141 2.0 1.5 1.8 1.8 159 chr2L 16058134 intron beat-Ia + chr2L 16058214 intron beat-Ia + chr2L 16058293 intron beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-712 271 chr2L 14672881 14672885 chr2L 16071771 16071771 4 1398889 4.5 12.0 8.2 0.4 1398890 chr2L 14672881 intron osp - chr2L 15372326 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_15370001 chr2L_15370001 RAL-712 272 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 11 145889 10.5 12.0 11.2 0.9 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-712 273 chr2L 16197120 16197142 chr2L 16197796 16197818 10 676 2.5 1.5 2.0 3.3 698 chr2L 16197120 intergenic not near genes chr2L 16197469 intergenic not near genes chr2L 16197818 intergenic not near genes chr2L_10_16195001 chr2L_16195001 RAL-712 274 chr2L 9084339 9084340 chr2L 16217660 16217660 11 7133321 9.0 12.0 10.5 1.0 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_12650001 chr2L_12650001 RAL-712 275 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 10.5 12.0 11.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-712 276 chr2L 16217660 16217660 chr2L 18622718 18622719 7 2405059 11.5 7.5 9.5 0.7 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_7_17420001 chr2L_17420001 RAL-712 277 chr2L 16217660 16217660 chr2L 19313783 19313784 4 3096123 11.5 8.5 10.0 0.4 3096124 chr2L 16217660 intergenic not near genes chr2L 17765722 intron CadN - chr2L 19313784 intergenic not near genes chr2L_4_17765001 chr2L_17765001 RAL-712 278 chr2L 16280252 16280285 chr2L 16281423 16281456 1360 12 1171 4.0 3.0 3.5 2.7 1204 chr2L 16280252 intron crp - chr2L 16280854 intron crp - chr2L 16281456 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-712 279 chr2L 16496776 16496791 chr2L 16496863 16496878 4 87 2.0 1.0 1.5 1.6 102 chr2L 16496776 intron Tpr2 + chr2L 16496827 intron Tpr2 + chr2L 16496878 intron Tpr2 + chr2L_4_16495001 chr2L_16495001 RAL-712 280 chr2L 16507946 16507958 chr2L 16508034 16508046 4 88 0.0 4.0 2.0 1.3 100 chr2L 16507946 intergenic CG5953 -,Tpr2 + chr2L 16507996 intergenic CG5953 -,Tpr2 + chr2L 16508046 intergenic CG5953 -,Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-712 281 chr2L 16538516 16538550 chr2L 16538678 16538712 11 162 2.0 1.5 1.8 3.9 196 chr2L 16538516 intergenic not near genes chr2L 16538614 intergenic not near genes chr2L 16538712 intergenic not near genes chr2L_11_16535001 chr2L_16535001 RAL-712 282 chr2L 16544651 16544682 chr2L 16544728 16544759 5 77 2.5 1.5 2.0 1.7 108 chr2L 16544651 intergenic CG42389 + chr2L 16544705 intergenic CG42389 + chr2L 16544759 intergenic CG42389 + chr2L_5_16540001 chr2L_16540001 RAL-712 283 chr2L 16654703 16654735 chr2L 16654796 16654827 10 93 3.0 2.0 2.5 2.9 124 chr2L 16654703 intron CG42389 + chr2L 16654765 intron CG42389 + chr2L 16654827 intron CG42389 + chr2L_10_16650001 chr2L_16650001 RAL-712 284 chr2L 16716959 16716981 chr2L 16717076 16717098 5 117 3.0 4.0 3.5 1.1 139 chr2L 16716959 intron Cyt-c-d + chr2L 16717028 intron Cyt-c-d + chr2L 16717098 intron Cyt-c-d + chr2L_5_16715001 chr2L_16715001 RAL-712 285 chr2L 16791433 16791466 chr2L 16791573 16791603 7 139 1.5 5.0 3.2 1.7 170 chr2L 16791433 intergenic CG17928 + chr2L 16791518 intergenic CG17928 + chr2L 16791603 5` UTR CG17928 + chr2L_7_16790001 chr2L_16790001 RAL-712 286 chr2L 16952683 16952715 chr2L 16952792 16952824 8 108 2.0 2.0 2.0 2.7 141 chr2L 16952683 intergenic not near genes chr2L 16952754 intergenic not near genes chr2L 16952824 intergenic not near genes chr2L_8_16950001 chr2L_16950001 RAL-712 287 chr2L 17005412 17005434 chr2L 17005509 17005531 5 96 0.5 2.5 1.5 2.0 119 chr2L 17005412 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005531 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-712 288 chr2L 17101902 17101914 chr2L 17101979 17101991 4 77 5.0 3.5 4.2 0.8 89 chr2L 17101902 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-712 289 chr2L 17120841 17120875 chr2L 17120920 17120954 7 79 2.5 3.0 2.8 1.8 113 chr2L 17120841 intergenic not near genes chr2L 17120898 intergenic not near genes chr2L 17120954 intergenic not near genes chr2L_7_17120001 chr2L_17120001 RAL-712 290 chr2L 17158724 17158755 chr2L 17158827 17158858 6 103 2.5 1.0 1.8 2.1 134 chr2L 17158724 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158791 intron,intron CG34106 +,beat-IIIa + chr2L 17158858 intron,intron CG34106 +,beat-IIIa + chr2L_6_17155001 chr2L_17155001 RAL-712 291 chr2L 17167570 17167585 chr2L 17167811 17167826 pogo 5 241 1.0 1.0 1.0 2.5 256 chr2L 17167570 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167826 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-712 292 chr2L 17199159 17199189 chr2L 17200626 17200656 hobo 7 1467 3.5 1.5 2.5 2.0 1497 chr2L 17199159 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200656 intron beat-IIIc - chr2L_7_17195001 chr2L_17195001 RAL-712 293 chr2L 17226102 17226124 chr2L 17226181 17226203 5 79 2.5 4.5 3.5 1.1 101 chr2L 17226102 intron beat-IIIc - chr2L 17226152 intron beat-IIIc - chr2L 17226203 intron beat-IIIc - chr2L_5_17225001 chr2L_17225001 RAL-712 294 chr2L 17260896 17260906 chr2L 17260978 17260989 4 83 3.0 1.0 2.0 1.3 93 chr2L 17260896 intergenic beat-IIIc - chr2L 17260942 intergenic beat-IIIc - chr2L 17260989 intergenic beat-IIIc - chr2L_4_17260001 chr2L_17260001 RAL-712 295 chr2L 17273189 17273222 chr2L 17277972 17278005 F-element 4 4783 3.5 1.5 2.5 1.1 4816 chr2L 17273189 intergenic not near genes chr2L 17275597 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-712 296 chr2L 17303437 17303459 chr2L 17303615 17303637 7 177 2.5 3.0 2.8 1.8 200 chr2L 17303437 intergenic not near genes chr2L 17303537 intergenic not near genes chr2L 17303637 intergenic not near genes chr2L_7_17300001 chr2L_17300001 RAL-712 297 chr2L 17398008 17398030 chr2L 17398098 17398119 5 89 0.0 3.5 1.8 1.8 111 chr2L 17398008 intron CLIP-190 + chr2L 17398064 intron CLIP-190 + chr2L 17398119 intron CLIP-190 + chr2L_5_17395001 chr2L_17395001 RAL-712 298 chr2L 17432014 17432047 chr2L 17432121 17432154 1360 5 107 0.0 1.0 0.5 3.3 140 chr2L 17432014 intron Dif - chr2L 17432084 intron Dif - chr2L 17432154 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-712 299 chr2L 17637171 17637202 chr2L 17637256 17637286 6 85 1.5 3.0 2.2 1.9 115 chr2L 17637171 intergenic not near genes chr2L 17637228 intergenic not near genes chr2L 17637286 intergenic not near genes chr2L_6_17635001 chr2L_17635001 RAL-712 300 chr2L 17643333 17643353 chr2L 17643619 17643639 8 286 2.5 1.0 1.8 2.9 306 chr2L 17643333 intergenic not near genes chr2L 17643486 intergenic not near genes chr2L 17643639 intergenic not near genes chr2L_8_17640001 chr2L_17640001 RAL-712 301 chr2L 17741757 17741769 chr2L 17741840 17741853 6 84 1.0 3.5 2.2 1.9 96 chr2L 17741757 intron CadN - chr2L 17741805 intron CadN - chr2L 17741853 intron CadN - chr2L_6_17740001 chr2L_17740001 RAL-712 302 chr2L 17911964 17911989 chr2L 17914142 17914166 pogo 4 2175 4.0 4.5 4.2 0.8 2202 chr2L 17911964 intergenic not near genes chr2L 17913065 intergenic not near genes chr2L 17914166 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-712 303 chr2L 17951945 17951978 chr2L 17953411 17953445 hobo 9 1467 1.0 1.5 1.2 4.1 1500 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-712 304 chr2L 18051877 18051907 chr2L 18061024 18061054 roo 6 9147 2.5 1.0 1.8 2.1 9177 chr2L 18051877 intron rdo + chr2L 18056466 intron rdo + chr2L 18061054 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-712 305 chr2L 18111247 18111263 chr2L 18111338 18111354 7 90 1.0 4.0 2.5 2.0 107 chr2L 18111247 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-712 306 chr2L 18146006 18146041 chr2L 18146094 18146129 6 88 0.5 1.0 0.8 3.3 123 chr2L 18146006 intron Socs36E - chr2L 18146068 intron Socs36E - chr2L 18146129 intron Socs36E - chr2L_6_18145001 chr2L_18145001 RAL-712 307 chr2L 18218616 18218633 chr2L 18218704 18218721 5 88 0.5 2.5 1.5 2.0 105 chr2L 18218616 intron CG42750 - chr2L 18218668 intron CG42750 - chr2L 18218721 intron CG42750 - chr2L_5_18215001 chr2L_18215001 RAL-712 308 chr2L 18243370 18243394 chr2L 18243447 18243471 6 77 3.5 2.0 2.8 1.6 101 chr2L 18243370 intron CG42750 - chr2L 18243420 intron CG42750 - chr2L 18243471 intron CG42750 - chr2L_6_18240001 chr2L_18240001 RAL-712 309 chr2L 18309485 18309512 chr2L 18309631 18309658 4 146 0.0 3.5 1.8 1.4 173 chr2L 18309485 intergenic CG43354 -,CR44694 + chr2L 18309572 intergenic CR44694 +,CG43354 - chr2L 18309658 5` UTR CR44694 + chr2L_4_18305001 chr2L_18305001 RAL-712 310 chr2L 18315261 18315267 chr2L 18315341 18315347 4 80 2.5 4.0 3.2 1.0 86 chr2L 18315261 intergenic not near genes chr2L 18315304 intergenic not near genes chr2L 18315347 intergenic not near genes chr2L_4_18315001 chr2L_18315001 RAL-712 311 chr2L 18393992 18394012 chr2L 18394070 18394092 6 79 1.5 3.0 2.2 1.9 100 chr2L 18393992 intergenic not near genes chr2L 18394042 intergenic not near genes chr2L 18394092 intergenic not near genes chr2L_6_18390001 chr2L_18390001 RAL-712 312 chr2L 18408024 18408054 chr2L 18412807 18412838 Doc 5 4784 0.5 0.0 0.2 4.2 4814 chr2L 18408024 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412838 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-712 313 chr2L 18449396 18449419 chr2L 18449497 18449520 5 101 0.0 1.5 0.8 2.8 124 chr2L 18449396 intergenic bsf -,ncm - chr2L 18449458 intergenic bsf - chr2L 18449520 3` UTR bsf - chr2L_5_18445001 chr2L_18445001 RAL-712 314 chr2L 18520736 18520764 chr2L 18525721 18525752 8 4986 12.0 17.0 14.5 0.5 5016 chr2L 18520736 intron CG10211 + chr2L 18523244 intron CG10211 + chr2L 18525752 intron CG10211 + chr2L_8_18520001 chr2L_18520001 RAL-712 315 chr2L 18622688 18622711 chr2L 18622767 18622791 8 79 3.5 2.5 3.0 2.0 103 chr2L 18622688 intron MESR3 + chr2L 18622740 intron MESR3 + chr2L 18622791 intron MESR3 + chr2L_8_18620001 chr2L_18620001 RAL-712 316 chr2L 16217660 16217661 chr2L 18622713 18622719 14 2405058 11.5 8.0 9.8 1.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_14_17420001 chr2L_17420001 RAL-712 317 chr2L 18629370 18629385 chr2L 18629455 18629468 4 84 2.5 2.0 2.2 1.2 98 chr2L 18629370 intron MESR3 + chr2L 18629419 intron MESR3 + chr2L 18629468 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-712 318 chr2L 18737308 18737332 chr2L 18737563 18737587 6 255 9.0 8.0 8.5 0.6 279 chr2L 18737308 intergenic not near genes chr2L 18737448 intergenic not near genes chr2L 18737587 intergenic not near genes chr2L_6_18735001 chr2L_18735001 RAL-712 319 chr2L 18811679 18811689 chr2L 18811888 18811896 4 208 1.5 2.0 1.8 1.4 217 chr2L 18811679 intergenic not near genes chr2L 18811788 intergenic not near genes chr2L 18811896 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-712 320 chr2L 18812568 18812587 chr2L 18812829 18812850 5 263 0.0 1.0 0.5 3.3 282 chr2L 18812568 intergenic CG17325 +,CG42305 + chr2L 18812709 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812850 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-712 321 chr2L 18847909 18847928 chr2L 18848320 18848339 4 411 0.5 2.5 1.5 1.6 430 chr2L 18847909 intron CG17321 + chr2L 18848124 intron CG17321 + chr2L 18848339 intron CG17321 + chr2L_4_18845001 chr2L_18845001 RAL-712 322 chr2L 18883872 18883889 chr2L 18883954 18883971 7 82 1.0 6.0 3.5 1.6 99 chr2L 18883872 intergenic not near genes chr2L 18883922 intergenic not near genes chr2L 18883971 intergenic not near genes chr2L_7_18880001 chr2L_18880001 RAL-712 323 chr2L 18898399 18898425 chr2L 18898480 18898504 8 82 1.5 2.0 1.8 2.9 105 chr2L 18898399 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898504 intergenic not near genes chr2L_8_18895001 chr2L_18895001 RAL-712 324 chr2L 19024093 19024097 chr2L 21768291 21768293 6 2744196 19.5 7.0 13.2 0.4 2744200 chr2L 19024093 3` UTR CR43700 - chr2L 20396193 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_6_20395001 chr2L_20395001 RAL-712 325 chr2L 19077297 19077318 chr2L 19078738 19078759 5 1441 2.5 1.5 2.0 1.7 1462 chr2L 19077297 3` UTR CG10700 - chr2L 19078028 exon CG10700 - chr2L 19078759 exon CG10700 - chr2L_5_19075001 chr2L_19075001 RAL-712 326 chr2L 19147374 19147389 chr2L 19154409 19154424 297 4 7035 5.0 1.5 3.2 1.0 7050 chr2L 19147374 intron brat + chr2L 19150899 intron brat + chr2L 19154424 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-712 327 chr2L 19228461 19228489 chr2L 19229326 19229354 6 865 3.0 0.0 1.5 2.4 893 chr2L 19228461 intergenic not near genes chr2L 19228908 intergenic not near genes chr2L 19229354 intergenic not near genes chr2L_6_19225001 chr2L_19225001 RAL-712 328 chr2L 19246829 19246850 chr2L 19246909 19246930 5 80 1.5 2.0 1.8 1.8 101 chr2L 19246829 intergenic not near genes chr2L 19246880 intergenic not near genes chr2L 19246930 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-712 329 chr2L 19345014 19345040 chr2L 19357223 19357249 blood 9 12209 3.0 4.5 3.8 1.9 12235 chr2L 19345014 intron dnt - chr2L 19351132 intron dnt - chr2L 19357249 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-712 330 chr2L 19357546 19357568 chr2L 19357636 19357658 9 90 3.0 4.0 3.5 2.0 112 chr2L 19357546 intron dnt - chr2L 19357602 intron dnt - chr2L 19357658 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-712 331 chr2L 19364080 19364106 chr2L 19364160 19364186 4 80 2.0 1.0 1.5 1.6 106 chr2L 19364080 intergenic CG13086 + chr2L 19364133 intergenic CG13086 + chr2L 19364186 intergenic CG13086 + chr2L_4_19360001 chr2L_19360001 RAL-712 332 chr2L 19379212 19379235 chr2L 19379352 19379373 5 139 1.0 2.5 1.8 1.8 161 chr2L 19379212 intergenic not near genes chr2L 19379292 intergenic not near genes chr2L 19379373 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-712 333 chr2L 19559405 19559417 chr2L 19559480 19559493 7 76 0.0 0.0 0.0 7.0 88 chr2L 19559405 exon Tep5 + chr2L 19559449 exon Tep5 + chr2L 19559493 exon Tep5 + chr2L_7_19555001 chr2L_19555001 RAL-712 334 chr2L 19560004 19560038 chr2L 19560257 19560290 6 252 2.5 4.5 3.5 1.3 286 chr2L 19560004 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-712 335 chr2L 19560836 19560862 chr2L 19560916 19560942 7 80 2.5 0.0 1.2 3.2 106 chr2L 19560836 intron Tep5 + chr2L 19560889 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-712 336 chr2L 19561347 19561367 chr2L 19561488 19561508 9 141 1.5 3.5 2.5 2.6 161 chr2L 19561347 exon Tep5 + chr2L 19561428 exon Tep5 + chr2L 19561508 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-712 337 chr2L 19562058 19562083 chr2L 19562143 19562168 11 85 2.0 5.0 3.5 2.4 110 chr2L 19562058 exon Tep5 + chr2L 19562113 intron Tep5 + chr2L 19562168 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-712 338 chr2L 19620093 19620132 chr2L 19621081 19621119 jockey 16 989 6.0 4.0 5.0 2.7 1026 chr2L 19620093 intron Lar + chr2L 19620606 intron Lar + chr2L 19621119 intron Lar + chr2L_16_19620001 chr2L_19620001 RAL-712 339 chr2L 19652573 19652594 chr2L 19674004 19674025 opus 4 21432 3.5 4.0 3.8 0.8 21452 chr2L 19652573 intron Lar + chr2L 19663299 intron Lar + chr2L 19674025 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-712 340 chr2L 19703537 19703561 chr2L 19712672 19712697 roo 7 9136 7.0 3.5 5.2 1.1 9160 chr2L 19703537 intron Lar + chr2L 19708117 intron Lar + chr2L 19712697 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-712 341 chr2L 19762811 19762839 chr2L 19763053 19763081 pogo 8 242 2.5 1.0 1.8 2.9 270 chr2L 19762811 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763081 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-712 342 chr2L 19773161 19773193 chr2L 19773248 19773280 4 87 4.5 1.5 3.0 1.0 119 chr2L 19773161 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773280 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-712 343 chr2L 19837287 19837310 chr2L 19837367 19837390 8 80 4.5 4.0 4.2 1.5 103 chr2L 19837287 intron sick + chr2L 19837338 intron sick + chr2L 19837390 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-712 344 chr2L 19846250 19846277 chr2L 19846331 19846358 7 81 0.0 5.5 2.8 1.8 108 chr2L 19846250 intron sick + chr2L 19846304 intron sick + chr2L 19846358 intron sick + chr2L_7_19845001 chr2L_19845001 RAL-712 345 chr2L 19911290 19911322 chr2L 19911378 19911410 10 88 3.0 2.5 2.8 2.6 120 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911410 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-712 346 chr2L 20005874 20005895 chr2L 20010950 20010971 flea 6 5075 3.0 3.0 3.0 1.5 5097 chr2L 20005874 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010971 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-712 347 chr2L 20041186 20041203 chr2L 20041331 20041348 6 145 0.0 5.5 2.8 1.6 162 chr2L 20041186 intron sNPF + chr2L 20041267 intron sNPF + chr2L 20041348 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-712 348 chr2L 20122637 20122646 chr2L 20122727 20122736 4 90 1.5 0.5 1.0 2.0 99 chr2L 20122637 intergenic not near genes chr2L 20122686 intergenic not near genes chr2L 20122736 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-712 349 chr2L 20124335 20124346 chr2L 20124413 20124424 4 78 3.5 4.0 3.8 0.8 89 chr2L 20124335 intergenic not near genes chr2L 20124380 intergenic not near genes chr2L 20124424 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-712 350 chr2L 20250924 20250958 chr2L 20251002 20251036 10 78 2.5 3.0 2.8 2.6 112 chr2L 20250924 intergenic not near genes chr2L 20250980 intergenic not near genes chr2L 20251036 intergenic not near genes chr2L_10_20250001 chr2L_20250001 RAL-712 351 chr2L 20272111 20272143 chr2L 20282822 20282854 copia 7 10711 2.5 2.5 2.5 2.0 10743 chr2L 20272111 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-712 352 chr2L 20302198 20302221 chr2L 20302277 20302300 7 79 1.0 3.0 2.0 2.3 102 chr2L 20302198 intergenic not near genes chr2L 20302249 intergenic not near genes chr2L 20302300 intergenic not near genes chr2L_7_20300001 chr2L_20300001 RAL-712 353 chr2L 20310881 20310921 chr2L 20310961 20311000 4 80 0.0 1.5 0.8 2.2 119 chr2L 20310881 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20311000 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-712 354 chr2L 20498696 20498706 chr2L 20498795 20498804 6 98 3.0 5.0 4.0 1.2 108 chr2L 20498696 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-712 355 chr2L 20553185 20553221 chr2L 20553261 20553297 7 76 2.0 5.0 3.5 1.6 112 chr2L 20553185 intergenic not near genes chr2L 20553241 intergenic not near genes chr2L 20553297 intergenic not near genes chr2L_7_20550001 chr2L_20550001 RAL-712 356 chr2L 20568663 20568687 chr2L 20569052 20569077 X-element 5 390 2.5 2.5 2.5 1.4 414 chr2L 20568663 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569077 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-712 357 chr2L 20576221 20576237 chr2L 20583689 20583704 blood 7 7467 4.0 1.0 2.5 2.0 7483 chr2L 20576221 intergenic not near genes chr2L 20579962 intergenic not near genes chr2L 20583704 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-712 358 chr2L 20601785 20601816 chr2L 20601863 20601894 6 78 2.5 3.0 2.8 1.6 109 chr2L 20601785 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601894 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-712 359 chr2L 20602723 20602739 chr2L 20602811 20602827 4 88 0.5 0.5 0.5 2.7 104 chr2L 20602723 intron CR44909 - chr2L 20602775 intron CR44909 - chr2L 20602827 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-712 360 chr2L 20648181 20648184 chr2L 20648359 20648362 4 178 19.0 4.0 11.5 0.3 181 chr2L 20648181 intron Uhg3 + chr2L 20648272 5` UTR Uhg3 + chr2L 20648362 5` UTR Uhg3 + chr2L_4_20645001 chr2L_20645001 RAL-712 361 chr2L 20668690 20668720 chr2L 20668766 20668795 7 76 0.5 2.5 1.5 2.8 105 chr2L 20668690 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668795 intron CG31678 - chr2L_7_20665001 chr2L_20665001 RAL-712 362 chr2L 20695796 20695828 chr2L 20695884 20695916 11 88 5.0 3.5 4.2 2.1 120 chr2L 20695796 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695916 intron Hr38 - chr2L_11_20695001 chr2L_20695001 RAL-712 363 chr2L 20780997 20781024 chr2L 20781106 20781133 10 109 1.5 3.5 2.5 2.9 136 chr2L 20780997 intron cad + chr2L 20781065 intron cad + chr2L 20781133 intron cad + chr2L_10_20780001 chr2L_20780001 RAL-712 364 chr2L 20791886 20791911 chr2L 20791982 20792007 11 95 1.0 7.5 4.2 2.1 121 chr2L 20791886 intron vari - chr2L 20791946 intron vari - chr2L 20792007 intron vari - chr2L_11_20790001 chr2L_20790001 RAL-712 365 chr2L 20818252 20818281 chr2L 20818679 20818708 7 427 4.0 3.5 3.8 1.5 456 chr2L 20818252 intron CheB38a - chr2L 20818480 exon CheB38a - chr2L 20818708 intergenic CheB38a - chr2L_7_20815001 chr2L_20815001 RAL-712 366 chr2L 20821500 20821522 chr2L 20821648 20821670 5 148 1.0 3.0 2.0 1.7 170 chr2L 20821500 intergenic not near genes chr2L 20821585 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-712 367 chr2L 20840027 20840055 chr2L 20840239 20840267 9 211 3.0 2.5 2.8 2.4 240 chr2L 20840027 intergenic not near genes chr2L 20840147 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_9_20840001 chr2L_20840001 RAL-712 368 chr2L 20842151 20842173 chr2L 20842275 20842297 4 124 1.5 2.0 1.8 1.4 146 chr2L 20842151 intron CG31676 + chr2L 20842224 intron CG31676 + chr2L 20842297 intron CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-712 369 chr2L 20901470 20901489 chr2L 20902634 20902653 1360 8 1164 0.0 0.5 0.2 6.7 1183 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_8_20900001 chr2L_20900001 RAL-712 370 chr2L 20976641 20976678 chr2L 20981456 20981492 X-element 5 4815 0.0 2.5 1.2 2.3 4851 chr2L 20976641 intron CG42238 - chr2L 20979066 intron CG42238 - chr2L 20981492 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-712 371 chr2L 20984755 20984764 chr2L 20984847 20984856 4 92 3.0 2.5 2.8 1.1 101 chr2L 20984755 intron CG42238 - chr2L 20984806 intron CG42238 - chr2L 20984856 intron CG42238 - chr2L_4_20980001 chr2L_20980001 RAL-712 372 chr2L 21001098 21001125 chr2L 21001177 21001204 10 79 1.5 1.5 1.5 4.0 106 chr2L 21001098 intron CG42238 - chr2L 21001151 intron CG42238 - chr2L 21001204 intron CG42238 - chr2L_10_21000001 chr2L_21000001 RAL-712 373 chr2L 21041139 21041168 chr2L 21049399 21049429 Tirant 5 8261 1.0 5.0 3.0 1.2 8290 chr2L 21041139 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-712 374 chr2L 21088918 21088951 chr2L 21089001 21089034 7 83 0.0 1.5 0.8 3.9 116 chr2L 21088918 intergenic ppk13 -,CG9259 + chr2L 21088976 intergenic ppk13 -,CG9259 + chr2L 21089034 intergenic ppk13 -,CG9259 + chr2L_7_21085001 chr2L_21085001 RAL-712 375 chr2L 21152871 21152900 chr2L 21152966 21152993 7 95 2.0 2.5 2.2 2.2 122 chr2L 21152871 intergenic not near genes chr2L 21152932 intergenic not near genes chr2L 21152993 intergenic not near genes chr2L_7_21150001 chr2L_21150001 RAL-712 376 chr2L 21286611 21286632 chr2L 21286689 21286710 5 78 0.5 2.0 1.2 2.3 99 chr2L 21286611 exon Mio - chr2L 21286660 intron Mio - chr2L 21286710 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-712 377 chr2L 21394379 21394391 chr2L 21394458 21394469 5 78 3.0 1.0 2.0 1.7 90 chr2L 21394379 intergenic not near genes chr2L 21394424 intergenic not near genes chr2L 21394469 intergenic not near genes chr2L_5_21390001 chr2L_21390001 RAL-712 378 chr2L 21597033 21597056 chr2L 21604777 21604800 roo 4 7744 2.5 4.5 3.5 0.9 7767 chr2L 21597033 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604800 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-712 379 chr2L 21691831 21691850 chr2L 21698301 21698320 Burdock 5 6470 1.0 0.0 0.5 3.3 6489 chr2L 21691831 intron CG31619 + chr2L 21695076 intron CG31619 + chr2L 21698320 intron CG31619 + chr2L_5_21695001 chr2L_21695001 RAL-712 380 chr2L 21754670 21754688 chr2L 21754749 21754769 4 80 1.0 1.5 1.2 1.8 99 chr2L 21754670 intron step - chr2L 21754720 intron step - chr2L 21754769 intron step - chr2L_4_21750001 chr2L_21750001 RAL-712 381 chr2L 21855499 21855511 chr2L 21855585 21855598 4 87 1.0 0.5 0.8 2.2 99 chr2L 21855499 intron CR44917 + chr2L 21855548 intron CR44917 + chr2L 21855598 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-712 382 chr2L 21859318 21859354 chr2L 21859398 21859434 14 79 2.5 1.0 1.8 5.0 116 chr2L 21859318 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859434 intron CR44917 + chr2L_14_21855001 chr2L_21855001 RAL-712 383 chr2L 21953796 21953823 chr2L 21954697 21954724 9 901 19.5 19.5 19.5 0.4 928 chr2L 21953796 intergenic not near genes chr2L 21954260 intergenic not near genes chr2L 21954724 intergenic not near genes chr2L_9_21950001 chr2L_21950001 RAL-712 384 chr2L 21981686 21981715 chr2L 21990851 21990879 roo 8 9165 3.0 2.0 2.5 2.3 9193 chr2L 21981686 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-712 385 chr2L 22776427 22776452 chr2L 22778216 22778241 S-element 6 1789 4.5 4.5 4.5 1.1 1814 chr2L 22776427 intergenic not near genes chr2L 22777334 intergenic not near genes chr2L 22778241 intergenic not near genes chr2L_6_22775001 chr2L_22775001 RAL-712 386 chr2R 529323 529352 chr2R 537948 537977 Max-element 9 8625 2.5 1.0 1.8 3.2 8654 chr2R 529323 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537977 intron CG40378 + chr2R_9_530001 chr2R_530001 RAL-712 387 chr2R 1513949 1513977 chr2R 1514102 1514129 7 153 39.5 42.5 41.0 0.2 180 chr2R 1513949 3` UTR Maf1 - chr2R 1514039 3` UTR Maf1 - chr2R 1514129 3` UTR Maf1 - chr2R_7_1510001 chr2R_1510001 RAL-712 388 chr2R 2498988 2499009 chr2R 2508135 2508156 roo 8 9147 2.0 3.5 2.8 2.1 9168 chr2R 2498988 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508156 intron MFS17 - chr2R_8_2500001 chr2R_2500001 RAL-712 389 chr2R 2508311 2508332 chr2R 2508449 2508470 9 138 3.0 1.5 2.2 2.8 159 chr2R 2508311 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508470 intron MFS17 - chr2R_9_2505001 chr2R_2505001 RAL-712 390 chr2R 3291934 3292103 chr2R 3915102 3915264 6 623167 9.5 16.5 13.0 0.4 623330 chr2R 3291934 intergenic not near genes chr2R 3603599 intergenic not near genes chr2R 3915264 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-712 391 chr2R 3293746 3293763 chr2R 3293822 3293841 5 77 2.0 3.0 2.5 1.4 95 chr2R 3293746 intergenic not near genes chr2R 3293794 intergenic not near genes chr2R 3293841 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-712 392 chr2R 3818932 3818940 chr2R 3819048 3819056 5 116 4.0 2.5 3.2 1.2 124 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819056 intergenic not near genes chr2R_5_3815001 chr2R_3815001 RAL-712 393 chr2R 4015316 4015345 chr2R 4015489 4015518 7 173 2.0 3.0 2.5 2.0 202 chr2R 4015316 intron Haspin + chr2R 4015417 intron Haspin + chr2R 4015518 intron Haspin + chr2R_7_4015001 chr2R_4015001 RAL-712 394 chr2R 4622956 4622988 chr2R 4624115 4624147 1360 7 1159 2.0 4.0 3.0 1.8 1191 chr2R 4622956 intergenic CR44101 - chr2R 4623552 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-712 395 chr2R 4750340 4750377 chr2R 4751496 4751534 1360 5 1156 0.0 1.5 0.8 2.8 1194 chr2R 4750340 intron conu + chr2R 4750937 intron conu + chr2R 4751534 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-712 396 chr2R 4821215 4821247 chr2R 4821301 4821333 8 86 1.0 1.0 1.0 4.0 118 chr2R 4821215 intron CG17528 - chr2R 4821274 intron CG17528 - chr2R 4821333 intron CG17528 - chr2R_8_4820001 chr2R_4820001 RAL-712 397 chr2R 4940959 4940978 chr2R 4943409 4943428 5 2450 13.5 15.0 14.2 0.3 2469 chr2R 4940959 intron Ir41a + chr2R 4942194 intron Ir41a + chr2R 4943428 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-712 398 chr2R 5019283 5019303 chr2R 5019369 5019388 8 86 2.5 5.0 3.8 1.7 105 chr2R 5019283 intron Ir41a + chr2R 5019336 intron Ir41a + chr2R 5019388 intron Ir41a + chr2R_8_5015001 chr2R_5015001 RAL-712 399 chr2R 5040751 5040758 chr2R 5041241 5041248 4 490 0.0 2.5 1.2 1.8 497 chr2R 5040751 intergenic not near genes chr2R 5041000 intergenic not near genes chr2R 5041248 intergenic not near genes chr2R_4_5040001 chr2R_5040001 RAL-712 400 chr2R 5075223 5075244 chr2R 5075349 5075372 6 127 2.5 0.0 1.2 2.7 149 chr2R 5075223 intergenic not near genes chr2R 5075298 intergenic not near genes chr2R 5075372 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-712 401 chr2R 5075351 5075369 chr2R 5075767 5075785 4 416 0.0 3.0 1.5 1.6 434 chr2R 5075351 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075785 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-712 402 chr2R 5080802 5080811 chr2R 5080893 5080902 6 91 2.5 2.5 2.5 1.7 100 chr2R 5080802 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080902 intergenic not near genes chr2R_6_5080001 chr2R_5080001 RAL-712 403 chr2R 5125260 5125275 chr2R 5125578 5125593 4 318 1.0 3.0 2.0 1.3 333 chr2R 5125260 intron gus - chr2R 5125426 intron gus - chr2R 5125593 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-712 404 chr2R 5363486 5363508 chr2R 5363564 5363586 6 78 4.0 2.0 3.0 1.5 100 chr2R 5363486 5` UTR CR42646 + chr2R 5363536 intron CR42646 + chr2R 5363586 intron CR42646 + chr2R_6_5360001 chr2R_5360001 RAL-712 405 chr2R 5417993 5418020 chr2R 5420625 5420652 Burdock 9 2632 2.0 1.5 1.8 3.2 2659 chr2R 5417993 intron laccase2 + chr2R 5419322 intron laccase2 + chr2R 5420652 intron laccase2 + chr2R_9_5415001 chr2R_5415001 RAL-712 406 chr2R 5472367 5472393 chr2R 5472461 5472488 7 94 1.0 0.5 0.8 3.9 121 chr2R 5472367 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-712 407 chr2R 5475452 5475470 chr2R 5475716 5475734 4 264 1.5 0.5 1.0 2.0 282 chr2R 5475452 intron CG30440 - chr2R 5475593 intron CG30440 - chr2R 5475734 intron CG30440 - chr2R_4_5475001 chr2R_5475001 RAL-712 408 chr2R 5543197 5543218 chr2R 5547281 5547302 invader1 4 4084 0.0 2.5 1.2 1.8 4105 chr2R 5543197 intron CG30438 + chr2R 5545250 intron CG30438 + chr2R 5547302 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-712 409 chr2R 5581401 5581425 chr2R 5627610 5627633 7 46209 0.5 3.0 1.8 2.5 46232 chr2R 5581401 intergenic not near genes chr2R 5604517 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_7_5600001 chr2R_5600001 RAL-712 410 chr2R 5807849 5807878 chr2R 5808035 5808065 10 186 3.0 0.0 1.5 4.0 216 chr2R 5807849 intron dpr12 + chr2R 5807957 intron dpr12 + chr2R 5808065 intron dpr12 + chr2R_10_5805001 chr2R_5805001 RAL-712 411 chr2R 5835934 5835966 chr2R 5836030 5836062 12 96 1.5 1.5 1.5 4.8 128 chr2R 5835934 intron dpr12 + chr2R 5835998 intron dpr12 + chr2R 5836062 intron dpr12 + chr2R_12_5835001 chr2R_5835001 RAL-712 412 chr2R 5869274 5869306 chr2R 5874350 5874382 flea 12 5076 1.5 2.5 2.0 4.0 5108 chr2R 5869274 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874382 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-712 413 chr2R 5902165 5902187 chr2R 5909724 5909746 17.6 6 7558 2.0 4.0 3.0 1.5 7581 chr2R 5902165 intron CG43366 + chr2R 5905956 intron CG43366 + chr2R 5909746 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-712 414 chr2R 6033450 6033472 chr2R 6033535 6033557 5 84 1.0 1.0 1.0 2.5 107 chr2R 6033450 intron SCAP - chr2R 6033504 intron SCAP - chr2R 6033557 intron SCAP - chr2R_5_6030001 chr2R_6030001 RAL-712 415 chr2R 6089837 6089855 chr2R 6089916 6089934 4 79 1.0 2.5 1.8 1.4 97 chr2R 6089837 intergenic not near genes chr2R 6089886 intergenic not near genes chr2R 6089934 intergenic EcR - chr2R_4_6085001 chr2R_6085001 RAL-712 416 chr2R 6096728 6096749 chr2R 6101912 6101947 BS 4 5194 3.5 3.5 3.5 0.9 5219 chr2R 6096728 intron EcR - chr2R 6099338 intron EcR - chr2R 6101947 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-712 417 chr2R 6129324 6129356 chr2R 6129402 6129434 5 78 0.5 1.0 0.8 2.8 110 chr2R 6129324 intron EcR - chr2R 6129379 intron EcR - chr2R 6129434 intron EcR - chr2R_5_6125001 chr2R_6125001 RAL-712 418 chr2R 6168193 6168226 chr2R 6168275 6168307 9 81 1.0 2.0 1.5 3.6 114 chr2R 6168193 intron EcR - chr2R 6168250 intron EcR - chr2R 6168307 intron EcR - chr2R_9_6165001 chr2R_6165001 RAL-712 419 chr2R 6178135 6178140 chr2R 6178261 6178266 4 126 0.5 4.0 2.2 1.2 131 chr2R 6178135 intergenic not near genes chr2R 6178200 intergenic not near genes chr2R 6178266 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-712 420 chr2R 6539824 6539855 chr2R 6539947 6539978 8 123 1.0 3.5 2.2 2.5 154 chr2R 6539824 intron jing + chr2R 6539901 intron jing + chr2R 6539978 intron jing + chr2R_8_6535001 chr2R_6535001 RAL-712 421 chr2R 6633201 6633231 chr2R 6633278 6633308 8 76 1.0 1.5 1.2 3.6 107 chr2R 6633201 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633308 intergenic Vha16-1 -,Trap1 - chr2R_8_6630001 chr2R_6630001 RAL-712 422 chr2R 6712585 6712601 chr2R 6712682 6712698 6 97 6.0 4.0 5.0 1.0 113 chr2R 6712585 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712698 intron,intron CG3409 -,CG45092 - chr2R_6_6710001 chr2R_6710001 RAL-712 423 chr2R 6738849 6738878 chr2R 6738931 6738960 12 82 2.5 3.0 2.8 3.2 111 chr2R 6738849 intron l(2)01289 - chr2R 6738904 intron l(2)01289 - chr2R 6738960 intron l(2)01289 - chr2R_12_6735001 chr2R_6735001 RAL-712 424 chr2R 6861576 6861601 chr2R 6861654 6861679 5 78 3.5 3.5 3.5 1.1 103 chr2R 6861576 intergenic coro - chr2R 6861628 intergenic coro - chr2R 6861679 intergenic coro - chr2R_5_6860001 chr2R_6860001 RAL-712 425 chr2R 6870595 6870619 chr2R 6870698 6870722 7 103 1.5 2.5 2.0 2.3 127 chr2R 6870595 intron coro - chr2R 6870658 intron coro - chr2R 6870722 intron coro - chr2R_7_6870001 chr2R_6870001 RAL-712 426 chr2R 6876223 6876251 chr2R 6876305 6876333 9 82 0.5 4.5 2.5 2.6 110 chr2R 6876223 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_9_6875001 chr2R_6875001 RAL-712 427 chr2R 7101612 7101646 chr2R 7101707 7101741 9 95 1.5 0.5 1.0 4.5 129 chr2R 7101612 intron esn + chr2R 7101676 intron esn + chr2R 7101741 intron esn + chr2R_9_7100001 chr2R_7100001 RAL-712 428 chr2R 7139946 7139953 chr2R 7141437 7141445 hopper2 4 1492 5.0 6.5 5.8 0.6 1499 chr2R 7139946 intergenic not near genes chr2R 7140696 intergenic not near genes chr2R 7141445 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-712 429 chr2R 7175495 7175529 chr2R 7175574 7175606 14 78 3.0 2.0 2.5 4.0 111 chr2R 7175495 intron pk + chr2R 7175550 intron pk + chr2R 7175606 intron pk + chr2R_14_7175001 chr2R_7175001 RAL-712 430 chr2R 7196571 7196601 chr2R 7201346 7201376 F-element 5 4775 3.5 1.0 2.2 1.6 4805 chr2R 7196571 intron pk + chr2R 7198974 intron pk + chr2R 7201376 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-712 431 chr2R 7235829 7235853 chr2R 7240921 7240943 jockey 4 5092 2.0 3.5 2.8 1.1 5114 chr2R 7235829 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-712 432 chr2R 7328127 7328146 chr2R 7328238 7328257 4 111 2.5 2.0 2.2 1.2 130 chr2R 7328127 intron,intron Dscam1 -,CR45129 + chr2R 7328192 intron,intron Dscam1 -,CR45129 + chr2R 7328257 intron,intron Dscam1 -,CR45129 + chr2R_4_7325001 chr2R_7325001 RAL-712 433 chr2R 7418140 7418166 chr2R 7418219 7418245 9 79 3.0 1.5 2.2 2.8 105 chr2R 7418140 intergenic not near genes chr2R 7418192 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_9_7415001 chr2R_7415001 RAL-712 434 chr2R 7450194 7450223 chr2R 7450284 7450313 8 90 0.0 0.0 0.0 8.0 119 chr2R 7450194 intron fa2h - chr2R 7450254 intron fa2h - chr2R 7450313 intron fa2h - chr2R_8_7450001 chr2R_7450001 RAL-712 435 chr2R 7608416 7608434 chr2R 7613619 7613637 I-element 6 5203 3.0 0.0 1.5 2.4 5221 chr2R 7608416 intron CG1358 - chr2R 7611026 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-712 436 chr2R 7714088 7714116 chr2R 7714164 7714192 10 76 2.5 0.0 1.2 4.5 104 chr2R 7714088 exon CG1942 + chr2R 7714140 3` UTR CG1942 + chr2R 7714192 intergenic CG1942 + chr2R_10_7710001 chr2R_7710001 RAL-712 437 chr2R 7777587 7777600 chr2R 7777683 7777696 4 96 2.0 3.5 2.8 1.1 109 chr2R 7777587 intron,intron CG30497 -,CG45093 - chr2R 7777642 intron,intron CG30497 -,CG45093 - chr2R 7777696 intron,intron CG30497 -,CG45093 - chr2R_4_7775001 chr2R_7775001 RAL-712 438 chr2R 7869192 7869215 chr2R 7873978 7874001 Doc 6 4786 3.5 2.0 2.8 1.6 4809 chr2R 7869192 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874001 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-712 439 chr2R 7889314 7889330 chr2R 7891896 7891912 9 2582 19.5 15.5 17.5 0.5 2598 chr2R 7889314 intergenic not near genes chr2R 7890613 5` UTR CG30377 + chr2R 7891912 intron CG30377 + chr2R_9_7890001 chr2R_7890001 RAL-712 440 chr2R 7897136 7897151 chr2R 7897224 7897240 5 89 0.0 3.0 1.5 2.0 104 chr2R 7897136 intron CG30377 + chr2R 7897188 intron CG30377 + chr2R 7897240 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-712 441 chr2R 7942932 7942959 chr2R 7943189 7943216 4 256 1.0 3.0 2.0 1.3 284 chr2R 7942932 intron CG14764 - chr2R 7943074 intron CG14764 - chr2R 7943216 intron CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-712 442 chr2R 8015651 8015683 chr2R 8017673 8017706 4 2023 1.0 5.0 3.0 1.0 2055 chr2R 8015651 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-712 443 chr2R 8157899 8157910 chr2R 8157987 8157997 6 88 2.5 3.5 3.0 1.5 98 chr2R 8157899 5` UTR CR44068 + chr2R 8157948 5` UTR CR44068 + chr2R 8157997 5` UTR CR44068 + chr2R_6_8155001 chr2R_8155001 RAL-712 444 chr2R 8249567 8249594 chr2R 8249649 8249676 7 81 1.0 0.0 0.5 4.7 109 chr2R 8249567 5` UTR CG44439 - chr2R 8249622 intergenic CG44439 - chr2R 8249676 intergenic CG44439 - chr2R_7_8245001 chr2R_8245001 RAL-712 445 chr2R 8277637 8277664 chr2R 8277732 8277759 9 94 3.5 1.5 2.5 2.6 122 chr2R 8277637 5` UTR CR44280 + chr2R 8277698 5` UTR CR44280 + chr2R 8277759 5` UTR CR44280 + chr2R_9_8275001 chr2R_8275001 RAL-712 446 chr2R 8330863 8330883 chr2R 8331349 8331369 roo 4 486 1.0 1.0 1.0 2.0 506 chr2R 8330863 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331369 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-712 447 chr2R 8379795 8379819 chr2R 8379891 8379915 6 96 1.0 2.5 1.8 2.1 120 chr2R 8379795 intron pdm3 + chr2R 8379855 intron pdm3 + chr2R 8379915 intron pdm3 + chr2R_6_8375001 chr2R_8375001 RAL-712 448 chr2R 8398210 8398243 chr2R 8402988 8403024 Doc 6 4780 2.5 4.0 3.2 1.4 4814 chr2R 8398210 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-712 449 chr2R 8419365 8419393 chr2R 8419448 8419476 8 83 2.5 5.5 4.0 1.6 111 chr2R 8419365 intergenic not near genes chr2R 8419420 intergenic not near genes chr2R 8419476 intergenic not near genes chr2R_8_8415001 chr2R_8415001 RAL-712 450 chr2R 8524948 8524974 chr2R 8525087 8525113 6 139 1.5 1.5 1.5 2.4 165 chr2R 8524948 intron mtt - chr2R 8525030 intron mtt - chr2R 8525113 intron mtt - chr2R_6_8525001 chr2R_8525001 RAL-712 451 chr2R 8536197 8536228 chr2R 8536429 8536460 9 232 1.5 2.0 1.8 3.2 263 chr2R 8536197 intergenic not near genes chr2R 8536328 intergenic not near genes chr2R 8536460 intergenic not near genes chr2R_9_8535001 chr2R_8535001 RAL-712 452 chr2R 8557450 8557472 chr2R 8557917 8557939 5 467 3.5 4.5 4.0 1.0 489 chr2R 8557450 intergenic not near genes chr2R 8557694 intergenic not near genes chr2R 8557939 intergenic CR45308 - chr2R_5_8555001 chr2R_8555001 RAL-712 453 chr2R 8564267 8564291 chr2R 8565270 8565294 5 1003 9.5 17.0 13.2 0.4 1027 chr2R 8564267 3` UTR Cyp6a14 - chr2R 8564780 intron Cyp6a14 - chr2R 8565294 exon Cyp6a14 - chr2R_5_8560001 chr2R_8560001 RAL-712 454 chr2R 8563668 8563698 chr2R 8565969 8565999 8 2302 24.5 25.5 25.0 0.3 2331 chr2R 8563668 intergenic not near genes chr2R 8564834 exon Cyp6a14 - chr2R 8565999 5` UTR Cyp6a14 - chr2R_8_8560001 chr2R_8560001 RAL-712 455 chr2R 8612584 8612608 chr2R 8612660 8612685 6 77 1.5 0.5 1.0 3.0 101 chr2R 8612584 intron CG8642 - chr2R 8612634 intron CG8642 - chr2R 8612685 intron CG8642 - chr2R_6_8610001 chr2R_8610001 RAL-712 456 chr2R 8722774 8722794 chr2R 8723015 8723035 pogo 4 240 3.0 2.5 2.8 1.1 261 chr2R 8722774 intron CG14767 - chr2R 8722904 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_4_8720001 chr2R_8720001 RAL-712 457 chr2R 8806324 8806358 chr2R 8806521 8806556 6 198 3.0 4.0 3.5 1.3 232 chr2R 8806324 intron sns + chr2R 8806440 intron sns + chr2R 8806556 intron sns + chr2R_6_8805001 chr2R_8805001 RAL-712 458 chr2R 8849231 8849259 chr2R 8849309 8849337 9 78 4.0 1.5 2.8 2.4 106 chr2R 8849231 intron sns + chr2R 8849284 intron sns + chr2R 8849337 intron sns + chr2R_9_8845001 chr2R_8845001 RAL-712 459 chr2R 8967424 8967454 chr2R 8967571 8967601 13 147 0.0 1.5 0.8 7.2 177 chr2R 8967424 intron CG8216 - chr2R 8967512 intron CG8216 - chr2R 8967601 intron CG8216 - chr2R_13_8965001 chr2R_8965001 RAL-712 460 chr2R 9055792 9055825 chr2R 9055872 9055903 6 79 1.5 1.5 1.5 2.4 111 chr2R 9055792 intron CG13743 - chr2R 9055848 intron CG13743 - chr2R 9055903 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-712 461 chr2R 9065917 9065947 chr2R 9065999 9066029 9 82 1.5 3.0 2.2 2.8 112 chr2R 9065917 intron ana + chr2R 9065973 intron ana + chr2R 9066029 intron ana + chr2R_9_9065001 chr2R_9065001 RAL-712 462 chr2R 9130357 9130383 chr2R 9130486 9130512 12 129 4.0 5.0 4.5 2.2 155 chr2R 9130357 intron CG18659 - chr2R 9130434 intron CG18659 - chr2R 9130512 intron CG18659 - chr2R_12_9130001 chr2R_9130001 RAL-712 463 chr2R 9151310 9151334 chr2R 9157780 9157804 Burdock 7 6470 2.0 3.5 2.8 1.8 6494 chr2R 9151310 3` UTR CG30345 + chr2R 9154557 intergenic not near genes chr2R 9157804 intergenic CG8008 - chr2R_7_9150001 chr2R_9150001 RAL-712 464 chr2R 9161972 9161996 chr2R 9162056 9162081 5 85 4.5 1.0 2.8 1.3 109 chr2R 9161972 5` UTR CR44283 + chr2R 9162026 intergenic CG8046 -,CR44283 + chr2R 9162081 3` UTR CG8046 - chr2R_5_9160001 chr2R_9160001 RAL-712 465 chr2R 9212693 9212721 chr2R 9213179 9213206 roo 8 486 4.5 5.5 5.0 1.3 513 chr2R 9212693 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-712 466 chr2R 9248307 9248335 chr2R 9248387 9248415 10 80 4.5 1.5 3.0 2.5 108 chr2R 9248307 intergenic not near genes chr2R 9248361 intergenic not near genes chr2R 9248415 intergenic not near genes chr2R_10_9245001 chr2R_9245001 RAL-712 467 chr2R 9368142 9368150 chr2R 9368218 9368225 4 76 3.0 0.0 1.5 1.6 83 chr2R 9368142 intron CG13954 - chr2R 9368184 intron CG13954 - chr2R 9368225 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-712 468 chr2R 9480075 9480109 chr2R 9490606 9490640 roo 5 10531 1.5 2.5 2.0 1.7 10565 chr2R 9480075 intergenic not near genes chr2R 9485358 intergenic not near genes chr2R 9490640 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-712 469 chr2R 9605830 9605859 chr2R 9605937 9605966 6 107 0.5 2.0 1.2 2.7 136 chr2R 9605830 3` UTR CR44285 - chr2R 9605898 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605966 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_6_9605001 chr2R_9605001 RAL-712 470 chr2R 9726612 9726632 chr2R 9734163 9734183 17.6 6 7551 1.0 0.5 0.8 3.3 7571 chr2R 9726612 intron sqa - chr2R 9730398 intron sqa - chr2R 9734183 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-712 471 chr2R 9794550 9794576 chr2R 9794634 9794660 9 85 3.5 5.0 4.2 1.7 110 chr2R 9794550 intron,intron CG1688 -,CG1698 + chr2R 9794605 intron,intron CG1688 -,CG1698 + chr2R 9794660 intron,intron CG1688 -,CG1698 + chr2R_9_9790001 chr2R_9790001 RAL-712 472 chr2R 9871039 9871074 chr2R 9871525 9871560 roo 8 485 3.5 2.0 2.8 2.1 521 chr2R 9871039 intron cbx - chr2R 9871300 intron cbx - chr2R 9871560 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-712 473 chr2R 9924810 9924840 chr2R 9924910 9924939 11 99 4.5 4.0 4.2 2.1 129 chr2R 9924810 intron Mef2 - chr2R 9924874 intron Mef2 - chr2R 9924939 intron Mef2 - chr2R_11_9920001 chr2R_9920001 RAL-712 474 chr2R 9945438 9945470 chr2R 9945633 9945666 BS 7 195 3.0 0.5 1.8 2.5 228 chr2R 9945438 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945666 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-712 475 chr2R 10005554 10005585 chr2R 10005662 10005693 10 108 2.0 1.5 1.8 3.6 139 chr2R 10005554 intron Pka-R2 - chr2R 10005624 intron Pka-R2 - chr2R 10005693 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-712 476 chr2R 10005851 10005877 chr2R 10007016 10007042 1360 8 1165 4.5 3.0 3.8 1.7 1191 chr2R 10005851 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007042 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-712 477 chr2R 10040715 10040738 chr2R 10040795 10040818 7 80 2.5 2.0 2.2 2.2 103 chr2R 10040715 intron oys - chr2R 10040766 intron oys - chr2R 10040818 intron oys - chr2R_7_10040001 chr2R_10040001 RAL-712 478 chr2R 10132202 10132217 chr2R 10132282 10132297 4 80 0.0 2.0 1.0 2.0 95 chr2R 10132202 intron gem + chr2R 10132250 intron gem + chr2R 10132297 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-712 479 chr2R 10171114 10171145 chr2R 10171198 10171229 8 84 1.5 3.5 2.5 2.3 115 chr2R 10171114 intron KCNQ - chr2R 10171172 intron KCNQ - chr2R 10171229 intron KCNQ - chr2R_8_10170001 chr2R_10170001 RAL-712 480 chr2R 10176882 10176911 chr2R 10186049 10186078 roo 7 9167 4.0 1.0 2.5 2.0 9196 chr2R 10176882 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186078 intron KCNQ - chr2R_7_10180001 chr2R_10180001 RAL-712 481 chr2R 10300644 10300666 chr2R 10300740 10300762 10 96 1.0 0.0 0.5 6.7 118 chr2R 10300644 intron CAP + chr2R 10300703 intron CAP + chr2R 10300762 intron CAP + chr2R_10_10300001 chr2R_10300001 RAL-712 482 chr2R 10303428 10303446 chr2R 10303689 10303706 5 261 2.0 5.0 3.5 1.1 278 chr2R 10303428 intron CAP + chr2R 10303567 intron CAP + chr2R 10303706 intron CAP + chr2R_5_10300001 chr2R_10300001 RAL-712 483 chr2R 10313317 10313333 chr2R 10313405 10313421 4 88 1.5 3.0 2.2 1.2 104 chr2R 10313317 intergenic not near genes chr2R 10313369 intergenic not near genes chr2R 10313421 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-712 484 chr2R 10318524 10318545 chr2R 10318610 10318631 6 86 0.0 3.5 1.8 2.1 107 chr2R 10318524 intron Ndg + chr2R 10318578 intron Ndg + chr2R 10318631 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-712 485 chr2R 10352672 10352705 chr2R 10352749 10352782 7 77 0.0 1.5 0.8 3.9 110 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352727 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352782 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-712 486 chr2R 10396743 10396749 chr2R 10397205 10397211 6 462 11.5 25.5 18.5 0.3 468 chr2R 10396743 intron CG42732 - chr2R 10396977 intron CG42732 - chr2R 10397211 intron CG42732 - chr2R_6_10395001 chr2R_10395001 RAL-712 487 chr2R 10409060 10409085 chr2R 10409140 10409165 6 80 0.0 2.0 1.0 3.0 105 chr2R 10409060 intron CG42732 - chr2R 10409112 intron CG42732 - chr2R 10409165 intron,exon CG42732 -,CG33477 - chr2R_6_10405001 chr2R_10405001 RAL-712 488 chr2R 10411817 10411837 chr2R 10411899 10411919 6 82 2.5 3.0 2.8 1.6 102 chr2R 10411817 intron CG42732 - chr2R 10411868 intron CG42732 - chr2R 10411919 intron CG42732 - chr2R_6_10410001 chr2R_10410001 RAL-712 489 chr2R 10454095 10454130 chr2R 10454172 10454207 11 77 2.5 2.0 2.2 3.4 112 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454151 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_11_10450001 chr2R_10450001 RAL-712 490 chr2R 10469020 10469055 chr2R 10469146 10469181 18 126 1.5 3.5 2.5 5.1 161 chr2R 10469020 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-712 491 chr2R 10492326 10492353 chr2R 10492413 10492442 9 88 3.0 3.0 3.0 2.2 116 chr2R 10492326 intron lola - chr2R 10492384 intron lola - chr2R 10492442 intron lola - chr2R_9_10490001 chr2R_10490001 RAL-712 492 chr2R 10582115 10582143 chr2R 10582210 10582238 10 95 1.5 0.0 0.8 5.6 123 chr2R 10582115 intron psq + chr2R 10582176 intron psq + chr2R 10582238 intron psq + chr2R_10_10580001 chr2R_10580001 RAL-712 493 chr2R 10585573 10585588 chr2R 10594156 10594171 Tirant 5 8583 2.0 0.0 1.0 2.5 8598 chr2R 10585573 intron psq + chr2R 10589872 intron psq + chr2R 10594171 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-712 494 chr2R 10622366 10622381 chr2R 10637131 10637146 mdg1 6 14765 2.5 1.0 1.8 2.1 14780 chr2R 10622366 intron CG11883 + chr2R 10629756 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-712 495 chr2R 10644063 10644084 chr2R 10644141 10644162 4 78 2.0 0.5 1.2 1.8 99 chr2R 10644063 intron Git - chr2R 10644112 intron Git - chr2R 10644162 intron Git - chr2R_4_10640001 chr2R_10640001 RAL-712 496 chr2R 10790142 10790168 chr2R 10790230 10790256 8 88 1.5 1.5 1.5 3.2 114 chr2R 10790142 intron CG33144 - chr2R 10790199 intron CG33144 - chr2R 10790256 intron CG33144 - chr2R_8_10790001 chr2R_10790001 RAL-712 497 chr2R 10796008 10796037 chr2R 10796090 10796118 7 81 2.5 1.0 1.8 2.5 110 chr2R 10796008 intron CG33144 - chr2R 10796063 intron CG33144 - chr2R 10796118 intron CG33144 - chr2R_7_10795001 chr2R_10795001 RAL-712 498 chr2R 10844585 10844615 chr2R 10844669 10844700 11 85 2.0 3.5 2.8 2.9 115 chr2R 10844585 intron CG30015 - chr2R 10844642 intron CG30015 - chr2R 10844700 intron CG30015 - chr2R_11_10840001 chr2R_10840001 RAL-712 499 chr2R 10860492 10860517 chr2R 10860574 10860599 6 82 3.5 3.5 3.5 1.3 107 chr2R 10860492 intron CG30015 - chr2R 10860546 intron CG30015 - chr2R 10860599 intron CG30015 - chr2R_6_10860001 chr2R_10860001 RAL-712 500 chr2R 10899189 10899195 chr2R 10899277 10899284 4 89 0.0 1.0 0.5 2.7 95 chr2R 10899189 intergenic Rpb5 - chr2R 10899236 intergenic Rpb5 - chr2R 10899284 intergenic Rpb5 - chr2R_4_10895001 chr2R_10895001 RAL-712 501 chr2R 10948024 10948061 chr2R 10955575 10955612 17.6 10 7550 1.0 2.5 1.8 3.6 7588 chr2R 10948024 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-712 502 chr2R 10959098 10959107 chr2R 10959177 10959184 4 78 1.0 0.0 0.5 2.7 86 chr2R 10959098 intergenic not near genes chr2R 10959141 intergenic not near genes chr2R 10959184 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-712 503 chr2R 10976355 10976372 chr2R 10976438 10976455 5 83 2.0 1.0 1.5 2.0 100 chr2R 10976355 intergenic not near genes chr2R 10976405 intergenic not near genes chr2R 10976455 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-712 504 chr2R 10979658 10979685 chr2R 10980128 10980155 297 5 470 0.0 0.5 0.2 4.2 497 chr2R 10979658 intergenic not near genes chr2R 10979906 intergenic not near genes chr2R 10980155 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-712 505 chr2R 11009816 11009848 chr2R 11018990 11019021 roo 7 9174 0.0 2.0 1.0 3.5 9205 chr2R 11009816 intron luna - chr2R 11014418 intron luna - chr2R 11019021 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-712 506 chr2R 11019878 11019910 chr2R 11024943 11024976 jockey 4 5066 2.0 1.0 1.5 1.6 5098 chr2R 11019878 intron luna - chr2R 11022427 intron luna - chr2R 11024976 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-712 507 chr2R 11179283 11179288 chr2R 11179369 11179373 4 86 4.5 7.0 5.8 0.6 90 chr2R 11179283 intron shn + chr2R 11179328 intron shn + chr2R 11179373 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-712 508 chr2R 11207813 11207849 chr2R 11208006 11208042 BS 8 193 1.0 2.0 1.5 3.2 229 chr2R 11207813 intron shn + chr2R 11207928 intron shn + chr2R 11208042 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-712 509 chr2R 11415526 11415549 chr2R 11418670 11418696 opus 5 3147 2.5 6.5 4.5 0.9 3170 chr2R 11415526 intron Drip - chr2R 11417111 intron Drip - chr2R 11418696 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-712 510 chr2R 11465847 11465870 chr2R 11465932 11465955 5 84 2.5 2.0 2.2 1.6 108 chr2R 11465847 intergenic not near genes chr2R 11465901 intergenic not near genes chr2R 11465955 intergenic not near genes chr2R_5_11465001 chr2R_11465001 RAL-712 511 chr2R 11472648 11472680 chr2R 11473845 11473876 pogo 6 1196 4.0 2.5 3.2 1.4 1228 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-712 512 chr2R 11568701 11568723 chr2R 11568811 11568833 5 110 2.0 2.0 2.0 1.7 132 chr2R 11568701 intergenic not near genes chr2R 11568767 intergenic not near genes chr2R 11568833 intergenic not near genes chr2R_5_11565001 chr2R_11565001 RAL-712 513 chr2R 11922752 11922770 chr2R 11922831 11922849 4 79 1.5 1.5 1.5 1.6 97 chr2R 11922752 intergenic not near genes chr2R 11922800 intergenic not near genes chr2R 11922849 intergenic not near genes chr2R_4_11920001 chr2R_11920001 RAL-712 514 chr2R 11945884 11945915 chr2R 11945960 11945992 14 77 2.5 7.0 4.8 2.4 108 chr2R 11945884 intron CG13188 + chr2R 11945938 intron CG13188 + chr2R 11945992 intron CG13188 + chr2R_14_11945001 chr2R_11945001 RAL-712 515 chr2R 11951344 11951367 chr2R 11951421 11951444 4 77 2.0 2.0 2.0 1.3 100 chr2R 11951344 intron CG13188 + chr2R 11951394 intron CG13188 + chr2R 11951444 intron CG13188 + chr2R_4_11950001 chr2R_11950001 RAL-712 516 chr2R 12000923 12000953 chr2R 12001170 12001202 7 249 2.0 4.5 3.2 1.7 279 chr2R 12000923 intergenic not near genes chr2R 12001062 intergenic otk - chr2R 12001202 intergenic otk - chr2R_7_12000001 chr2R_12000001 RAL-712 517 chr2R 12104684 12104702 chr2R 12104764 12104782 7 80 5.0 4.0 4.5 1.3 98 chr2R 12104684 intron jeb - chr2R 12104733 intron jeb - chr2R 12104782 intron jeb - chr2R_7_12100001 chr2R_12100001 RAL-712 518 chr2R 12120403 12120429 chr2R 12120485 12120511 5 82 4.0 1.5 2.8 1.3 108 chr2R 12120403 intergenic not near genes chr2R 12120457 intergenic not near genes chr2R 12120511 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-712 519 chr2R 12124845 12124855 chr2R 12124929 12124939 5 84 2.0 0.5 1.2 2.3 94 chr2R 12124845 intergenic not near genes chr2R 12124892 intergenic not near genes chr2R 12124939 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-712 520 chr2R 12186007 12186037 chr2R 12186102 12186132 8 95 0.5 3.0 1.8 2.9 125 chr2R 12186007 intron Cyp6g1 + chr2R 12186070 intron Cyp6g1 + chr2R 12186132 intron Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-712 521 chr2R 12187472 12187508 chr2R 12190088 12190124 48 2617 117.5 55.0 86.2 0.6 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_48_12185001 chr2R_12185001 RAL-712 522 chr2R 12363379 12363412 chr2R 12363811 12363844 11 431 3.0 3.0 3.0 2.8 465 chr2R 12363379 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_11_12360001 chr2R_12360001 RAL-712 523 chr2R 12385343 12385378 chr2R 12385424 12385459 7 80 0.0 3.0 1.5 2.8 116 chr2R 12385343 intergenic not near genes chr2R 12385401 intergenic not near genes chr2R 12385459 intergenic not near genes chr2R_7_12385001 chr2R_12385001 RAL-712 524 chr2R 12417462 12417484 chr2R 12417542 12417563 10 80 4.0 5.5 4.8 1.7 101 chr2R 12417462 exon CG13157 + chr2R 12417512 exon CG13157 + chr2R 12417563 exon CG13157 + chr2R_10_12415001 chr2R_12415001 RAL-712 525 chr2R 12481139 12481166 chr2R 12482942 12482969 roo 9 1803 3.5 3.5 3.5 2.0 1830 chr2R 12481139 exon Dh44-R2 + chr2R 12482054 intron Dh44-R2 + chr2R 12482969 intron Dh44-R2 + chr2R_9_12480001 chr2R_12480001 RAL-712 526 chr2R 12501694 12501726 chr2R 12503856 12503888 Rt1c 5 2161 2.0 7.0 4.5 0.9 2194 chr2R 12501694 intron fdl - chr2R 12502791 intron fdl - chr2R 12503888 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-712 527 chr2R 12522427 12522459 chr2R 12522511 12522543 4 84 2.0 1.5 1.8 1.4 116 chr2R 12522427 exon CG33632 + chr2R 12522485 exon CG33632 + chr2R 12522543 intron CG33632 + chr2R_4_12520001 chr2R_12520001 RAL-712 528 chr2R 12707518 12707532 chr2R 12715884 12715898 roo 5 8366 2.5 2.0 2.2 1.6 8380 chr2R 12707518 intron CG42663 + chr2R 12711708 intron CG42663 + chr2R 12715898 intron CG42663 + chr2R_5_12710001 chr2R_12710001 RAL-712 529 chr2R 12777807 12777823 chr2R 12777916 12777932 4 109 2.0 2.0 2.0 1.3 125 chr2R 12777807 5` UTR CR45266 + chr2R 12777870 5` UTR CR45266 + chr2R 12777932 5` UTR CR45266 + chr2R_4_12775001 chr2R_12775001 RAL-712 530 chr2R 12789292 12789322 chr2R 12797655 12797685 roo 7 8362 0.5 2.5 1.5 2.8 8393 chr2R 12789292 intron,3` UTR sca +,CR45137 - chr2R 12793488 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-712 531 chr2R 12819456 12819476 chr2R 12824525 12824545 jockey 8 5069 4.0 1.5 2.8 2.1 5089 chr2R 12819456 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824545 intergenic not near genes chr2R_8_12820001 chr2R_12820001 RAL-712 532 chr2R 12830117 12830152 chr2R 12830241 12830273 5 123 1.0 0.5 0.8 2.8 156 chr2R 12830117 intergenic not near genes chr2R 12830195 intergenic not near genes chr2R 12830273 intergenic not near genes chr2R_5_12830001 chr2R_12830001 RAL-712 533 chr2R 13007971 13007984 chr2R 13008048 13008061 6 77 3.5 0.0 1.8 2.1 90 chr2R 13007971 intergenic Su(z)2 + chr2R 13008016 intergenic Su(z)2 + chr2R 13008061 intergenic Su(z)2 + chr2R_6_13005001 chr2R_13005001 RAL-712 534 chr2R 13012487 13012510 chr2R 13012567 13012591 7 81 0.0 4.5 2.2 2.2 104 chr2R 13012487 intergenic not near genes chr2R 13012539 intergenic not near genes chr2R 13012591 intergenic not near genes chr2R_7_13010001 chr2R_13010001 RAL-712 535 chr2R 13089754 13089783 chr2R 13089864 13089891 9 110 0.5 2.0 1.2 4.1 137 chr2R 13089754 intergenic not near genes chr2R 13089822 intergenic not near genes chr2R 13089891 intergenic not near genes chr2R_9_13085001 chr2R_13085001 RAL-712 536 chr2R 13136834 13136863 chr2R 13141632 13141661 Doc 11 4797 2.5 5.5 4.0 2.2 4827 chr2R 13136834 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_11_13135001 chr2R_13135001 RAL-712 537 chr2R 13167426 13167460 chr2R 13167520 13167554 4 93 1.0 0.0 0.5 2.7 128 chr2R 13167426 intron GLaz - chr2R 13167490 intron GLaz - chr2R 13167554 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-712 538 chr2R 13220539 13220546 chr2R 13220638 13220645 4 99 0.0 3.5 1.8 1.4 106 chr2R 13220539 intron CG17059 + chr2R 13220592 intron CG17059 + chr2R 13220645 intron CG17059 + chr2R_4_13220001 chr2R_13220001 RAL-712 539 chr2R 13320661 13320691 chr2R 13321088 13321118 7 428 4.0 2.0 3.0 1.8 457 chr2R 13320661 intergenic not near genes chr2R 13320890 intergenic not near genes chr2R 13321118 intergenic not near genes chr2R_7_13320001 chr2R_13320001 RAL-712 540 chr2R 13358770 13358796 chr2R 13358865 13358892 14 96 1.5 1.5 1.5 5.6 122 chr2R 13358770 intergenic not near genes chr2R 13358831 intergenic not near genes chr2R 13358892 intergenic not near genes chr2R_14_13355001 chr2R_13355001 RAL-712 541 chr2R 13431488 13431515 chr2R 13431567 13431594 6 79 2.0 0.0 1.0 3.0 106 chr2R 13431488 intron CG42321 - chr2R 13431541 intron CG42321 - chr2R 13431594 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-712 542 chr2R 13438866 13438879 chr2R 13440184 13440197 7 1318 11.5 29.0 20.2 0.3 1331 chr2R 13438866 5` UTR CG42321 - chr2R 13439532 3` UTR cnn - chr2R 13440197 exon cnn - chr2R_7_13435001 chr2R_13435001 RAL-712 543 chr2R 13566257 13566288 chr2R 13566337 13566368 11 80 1.5 0.0 0.8 6.1 111 chr2R 13566257 intergenic not near genes chr2R 13566312 intergenic not near genes chr2R 13566368 intergenic not near genes chr2R_11_13565001 chr2R_13565001 RAL-712 544 chr2R 13721209 13721227 chr2R 13721292 13721309 12 82 5.5 0.0 2.8 3.2 100 chr2R 13721209 intron fas + chr2R 13721259 intron fas + chr2R 13721309 intron fas + chr2R_12_13720001 chr2R_13720001 RAL-712 545 chr2R 13790330 13790339 chr2R 13790406 13790415 4 76 2.5 0.0 1.2 1.8 85 chr2R 13790330 intergenic not near genes chr2R 13790372 intergenic not near genes chr2R 13790415 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-712 546 chr2R 14000230 14000264 chr2R 14000458 14000492 6 228 4.0 1.0 2.5 1.7 262 chr2R 14000230 intron mam + chr2R 14000361 intron mam + chr2R 14000492 intron mam + chr2R_6_14000001 chr2R_14000001 RAL-712 547 chr2R 14171471 14171499 chr2R 14171561 14171589 8 90 3.5 3.0 3.2 1.9 118 chr2R 14171471 intron CG8331 + chr2R 14171530 intron CG8331 + chr2R 14171589 intron CG8331 + chr2R_8_14170001 chr2R_14170001 RAL-712 548 chr2R 14318583 14318591 chr2R 14318668 14318676 4 85 0.5 0.0 0.2 3.3 93 chr2R 14318583 intron Shroom + chr2R 14318630 intron Shroom + chr2R 14318676 intron Shroom + chr2R_4_14315001 chr2R_14315001 RAL-712 549 chr2R 14393864 14393889 chr2R 14393949 14393974 7 85 5.0 2.0 3.5 1.6 110 chr2R 14393864 intergenic not near genes chr2R 14393919 intergenic not near genes chr2R 14393974 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-712 550 chr2R 14394227 14394247 chr2R 14399016 14399036 Doc 5 4789 1.0 2.0 1.5 2.0 4809 chr2R 14394227 intergenic not near genes chr2R 14396632 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-712 551 chr2R 14467305 14467327 chr2R 14476463 14476485 roo 8 9158 1.0 4.0 2.5 2.3 9180 chr2R 14467305 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-712 552 chr2R 14497400 14497407 chr2R 14498566 14498573 1360 5 1166 1.0 1.5 1.2 2.3 1173 chr2R 14497400 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498573 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-712 553 chr2R 14565560 14565588 chr2R 14565634 14565665 9 77 2.5 2.0 2.2 2.8 105 chr2R 14565560 intron ttv + chr2R 14565612 intron ttv + chr2R 14565665 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-712 554 chr2R 14569991 14570018 chr2R 14570383 14570411 4 393 4.5 2.5 3.5 0.9 420 chr2R 14569991 intron ttv + chr2R 14570201 intron ttv + chr2R 14570411 intron ttv + chr2R_4_14570001 chr2R_14570001 RAL-712 555 chr2R 14708275 14708285 chr2R 14708387 14708396 4 112 3.5 1.0 2.2 1.2 121 chr2R 14708275 intron mspo - chr2R 14708336 intron mspo - chr2R 14708396 intron mspo - chr2R_4_14705001 chr2R_14705001 RAL-712 556 chr2R 14796860 14796886 chr2R 14796947 14796971 5 86 5.0 3.0 4.0 1.0 111 chr2R 14796860 intron kn - chr2R 14796916 intron kn - chr2R 14796971 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-712 557 chr2R 14799868 14799892 chr2R 14799944 14799968 7 76 0.5 2.0 1.2 3.2 100 chr2R 14799868 intron kn - chr2R 14799918 intron kn - chr2R 14799968 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-712 558 chr2R 14816109 14816138 chr2R 14816205 14816233 5 96 0.5 2.0 1.2 2.3 124 chr2R 14816109 intergenic not near genes chr2R 14816171 intergenic not near genes chr2R 14816233 intergenic not near genes chr2R_5_14815001 chr2R_14815001 RAL-712 559 chr2R 14820902 14820934 chr2R 14820989 14821021 8 87 2.5 2.0 2.2 2.5 119 chr2R 14820902 intergenic not near genes chr2R 14820962 intergenic not near genes chr2R 14821021 intergenic not near genes chr2R_8_14820001 chr2R_14820001 RAL-712 560 chr2R 14855029 14855046 chr2R 14855121 14855138 4 92 6.0 3.0 4.5 0.7 109 chr2R 14855029 5` UTR Ciao1 - chr2R 14855084 intergenic Ciao1 -,HPS1 + chr2R 14855138 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-712 561 chr2R 14889208 14889238 chr2R 14897816 14897843 Max-element 6 8606 5.5 0.5 3.0 1.5 8635 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897843 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-712 562 chr2R 14911704 14911723 chr2R 14911827 14911845 4 123 2.0 1.0 1.5 1.6 141 chr2R 14911704 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-712 563 chr2R 14913664 14913694 chr2R 14913774 14913804 6 110 1.0 1.5 1.2 2.7 140 chr2R 14913664 intron CG10249 - chr2R 14913734 intron CG10249 - chr2R 14913804 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-712 564 chr2R 14922143 14922172 chr2R 14922217 14922248 5 75 6.0 1.5 3.8 1.0 105 chr2R 14922143 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922248 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-712 565 chr2R 15004725 15004764 chr2R 15005054 15005092 jockey 10 329 2.5 1.5 2.0 3.3 367 chr2R 15004725 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005092 intergenic not near genes chr2R_10_15000001 chr2R_15000001 RAL-712 566 chr2R 15015459 15015488 chr2R 15022883 15022911 mdg1 10 7424 3.5 3.5 3.5 2.2 7452 chr2R 15015459 intron hbs + chr2R 15019185 intron hbs + chr2R 15022911 intron hbs + chr2R_10_15015001 chr2R_15015001 RAL-712 567 chr2R 15065620 15065647 chr2R 15065692 15065725 6 77 1.0 2.0 1.5 2.4 105 chr2R 15065620 intergenic not near genes chr2R 15065672 intergenic not near genes chr2R 15065725 intergenic not near genes chr2R_6_15065001 chr2R_15065001 RAL-712 568 chr2R 15084977 15085008 chr2R 15092026 15092057 297 5 7049 1.0 1.5 1.2 2.3 7080 chr2R 15084977 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092057 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-712 569 chr2R 15093998 15094024 chr2R 15094151 15094177 5 153 2.5 2.5 2.5 1.4 179 chr2R 15093998 intergenic not near genes chr2R 15094088 intergenic not near genes chr2R 15094177 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-712 570 chr2R 15119316 15119345 chr2R 15127797 15127826 Tirant 7 8481 1.0 3.0 2.0 2.3 8510 chr2R 15119316 intron chn + chr2R 15123571 intron chn + chr2R 15127826 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-712 571 chr2R 15133483 15133513 chr2R 15133562 15133592 8 78 2.5 2.0 2.2 2.5 109 chr2R 15133483 intron chn + chr2R 15133538 intron chn + chr2R 15133592 intron chn + chr2R_8_15130001 chr2R_15130001 RAL-712 572 chr2R 15137976 15138002 chr2R 15138056 15138084 11 81 0.5 0.0 0.2 9.2 108 chr2R 15137976 intron chn + chr2R 15138030 intron chn + chr2R 15138084 intron chn + chr2R_11_15135001 chr2R_15135001 RAL-712 573 chr2R 15196093 15196126 chr2R 15196189 15196222 7 95 2.0 2.0 2.0 2.3 129 chr2R 15196093 intergenic not near genes chr2R 15196158 intergenic not near genes chr2R 15196222 intergenic not near genes chr2R_7_15195001 chr2R_15195001 RAL-712 574 chr2R 15294680 15294709 chr2R 15294762 15294791 8 81 3.0 3.0 3.0 2.0 111 chr2R 15294680 intron,3` UTR Trpm -,CR44241 - chr2R 15294736 intron,3` UTR Trpm -,CR44241 - chr2R 15294791 intron,3` UTR Trpm -,CR44241 - chr2R_8_15290001 chr2R_15290001 RAL-712 575 chr2R 15296160 15296172 chr2R 15296243 15296253 5 82 2.5 1.5 2.0 1.7 93 chr2R 15296160 intron Trpm - chr2R 15296206 intron Trpm - chr2R 15296253 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-712 576 chr2R 15330203 15330237 chr2R 15330337 15330371 4 134 0.5 0.5 0.5 2.7 168 chr2R 15330203 intergenic CR44371 - chr2R 15330287 intergenic CR44371 - chr2R 15330371 intergenic CR44371 - chr2R_4_15330001 chr2R_15330001 RAL-712 577 chr2R 15408462 15408493 chr2R 15408563 15408593 5 99 3.5 2.5 3.0 1.2 131 chr2R 15408462 intron CG43729 + chr2R 15408528 intron CG43729 + chr2R 15408593 intron CG43729 + chr2R_5_15405001 chr2R_15405001 RAL-712 578 chr2R 15446823 15446830 chr2R 15447147 15447156 5 326 6.5 2.5 4.5 0.9 333 chr2R 15446823 intron CG43729 + chr2R 15446990 intron CG43729 + chr2R 15447156 intron CG43729 + chr2R_5_15445001 chr2R_15445001 RAL-712 579 chr2R 15639165 15639172 chr2R 15639295 15639301 4 130 5.0 1.5 3.2 1.0 136 chr2R 15639165 intron CG42524 + chr2R 15639233 intron CG42524 + chr2R 15639301 intron CG42524 + chr2R_4_15635001 chr2R_15635001 RAL-712 580 chr2R 15645686 15645700 chr2R 15645781 15645796 7 94 2.5 0.0 1.2 3.2 110 chr2R 15645686 intron CG42524 + chr2R 15645741 intron CG42524 + chr2R 15645796 intron CG42524 + chr2R_7_15645001 chr2R_15645001 RAL-712 581 chr2R 15655988 15656010 chr2R 15656066 15656090 8 80 1.5 2.0 1.8 2.9 102 chr2R 15655988 intron CG42524 + chr2R 15656039 intron CG42524 + chr2R 15656090 intron CG42524 + chr2R_8_15655001 chr2R_15655001 RAL-712 582 chr2R 15700258 15700278 chr2R 15700351 15700373 6 94 2.0 2.5 2.2 1.9 115 chr2R 15700258 intron,5` UTR CG30080 -,CG42662 - chr2R 15700316 intron,5` UTR CG30080 -,CG42662 - chr2R 15700373 intron,5` UTR CG30080 -,CG42662 - chr2R_6_15700001 chr2R_15700001 RAL-712 583 chr2R 15891829 15891834 chr2R 15891905 15891910 4 76 0.0 1.5 0.8 2.2 81 chr2R 15891829 intron sli - chr2R 15891870 intron sli - chr2R 15891910 intron sli - chr2R_4_15890001 chr2R_15890001 RAL-712 584 chr2R 15951836 15951870 chr2R 15951911 15951946 11 75 0.5 2.0 1.2 5.0 110 chr2R 15951836 intron Strn-Mlck - chr2R 15951891 intron Strn-Mlck - chr2R 15951946 intron Strn-Mlck - chr2R_11_15950001 chr2R_15950001 RAL-712 585 chr2R 16054953 16054960 chr2R 16055035 16055043 7 83 9.0 6.5 7.8 0.8 90 chr2R 16054953 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055043 intron CG8405 + chr2R_7_16050001 chr2R_16050001 RAL-712 586 chr2R 16129423 16129450 chr2R 16129500 16129527 5 77 2.0 4.0 3.0 1.2 104 chr2R 16129423 intron spin + chr2R 16129475 intron spin + chr2R 16129527 intron spin + chr2R_5_16125001 chr2R_16125001 RAL-712 587 chr2R 16380122 16380144 chr2R 16380220 16380238 5 97 1.5 0.5 1.0 2.5 116 chr2R 16380122 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380180 3` UTR CR45317 - chr2R 16380238 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_5_16380001 chr2R_16380001 RAL-712 588 chr2R 16503873 16503903 chr2R 16503963 16503993 11 90 2.5 4.5 3.5 2.4 120 chr2R 16503873 intron Sema-2a + chr2R 16503933 intron Sema-2a + chr2R 16503993 intron Sema-2a + chr2R_11_16500001 chr2R_16500001 RAL-712 589 chr2R 16518045 16518065 chr2R 16518121 16518141 5 76 2.5 3.0 2.8 1.3 96 chr2R 16518045 intron Sema-2a + chr2R 16518093 intron Sema-2a + chr2R 16518141 intron Sema-2a + chr2R_5_16515001 chr2R_16515001 RAL-712 590 chr2R 16539644 16539662 chr2R 16544853 16544870 copia 5 5209 1.5 0.5 1.0 2.5 5226 chr2R 16539644 intergenic not near genes chr2R 16542257 intergenic not near genes chr2R 16544870 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-712 591 chr2R 16571883 16571899 chr2R 16571978 16571994 4 95 3.0 1.5 2.2 1.2 111 chr2R 16571883 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571994 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-712 592 chr2R 16617060 16617090 chr2R 16617139 16617169 7 79 0.0 4.5 2.2 2.2 109 chr2R 16617060 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-712 593 chr2R 16708991 16709023 chr2R 16709087 16709119 9 96 1.5 2.5 2.0 3.0 128 chr2R 16708991 intron CG30463 - chr2R 16709055 intron CG30463 - chr2R 16709119 intron CG30463 - chr2R_9_16705001 chr2R_16705001 RAL-712 594 chr2R 16732623 16732647 chr2R 16732710 16732734 6 87 1.5 2.0 1.8 2.1 111 chr2R 16732623 5` UTR CG30463 - chr2R 16732678 5` UTR CG30463 - chr2R 16732734 5` UTR CG30463 - chr2R_6_16730001 chr2R_16730001 RAL-712 595 chr2R 16737136 16737163 chr2R 16737236 16737259 10 99 3.5 3.0 3.2 2.4 123 chr2R 16737136 3` UTR CG43104 - chr2R 16737198 3` UTR CG43104 - chr2R 16737259 exon CG43104 - chr2R_10_16735001 chr2R_16735001 RAL-712 596 chr2R 16931498 16931525 chr2R 16931680 16931705 10 182 2.5 1.5 2.0 3.3 207 chr2R 16931498 intron Pkc53E + chr2R 16931602 intron Pkc53E + chr2R 16931705 intron Pkc53E + chr2R_10_16930001 chr2R_16930001 RAL-712 597 chr2R 17147244 17147270 chr2R 17152273 17152301 jockey 7 5030 2.0 2.5 2.2 2.2 5057 chr2R 17147244 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-712 598 chr2R 17165721 17165754 chr2R 17165878 17165908 13 159 3.5 2.5 3.0 3.2 187 chr2R 17165721 exon CG10953 - chr2R 17165814 exon CG10953 - chr2R 17165908 exon CG10953 - chr2R_13_17165001 chr2R_17165001 RAL-712 599 chr2R 17176354 17176383 chr2R 17182544 17182573 diver 11 6190 1.0 0.5 0.8 6.1 6219 chr2R 17176354 intergenic not near genes chr2R 17179464 intergenic not near genes chr2R 17182573 intergenic not near genes chr2R_11_17175001 chr2R_17175001 RAL-712 600 chr2R 17236513 17236531 chr2R 17241716 17241735 copia 7 5204 2.0 2.0 2.0 2.3 5222 chr2R 17236513 intron mbl + chr2R 17239124 intron mbl + chr2R 17241735 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-712 601 chr2R 17242596 17242607 chr2R 17242678 17242689 5 82 6.5 2.0 4.2 1.0 93 chr2R 17242596 intron mbl + chr2R 17242642 intron mbl + chr2R 17242689 intron mbl + chr2R_5_17240001 chr2R_17240001 RAL-712 602 chr2R 17381587 17381614 chr2R 17381675 17381702 8 87 2.0 1.0 1.5 3.2 115 chr2R 17381587 intergenic not near genes chr2R 17381644 intergenic not near genes chr2R 17381702 intergenic not near genes chr2R_8_17380001 chr2R_17380001 RAL-712 603 chr2R 17392284 17392306 chr2R 17392368 17392390 12 83 1.0 2.0 1.5 4.8 106 chr2R 17392284 intergenic not near genes chr2R 17392337 intergenic not near genes chr2R 17392390 intergenic not near genes chr2R_12_17390001 chr2R_17390001 RAL-712 604 chr2R 17470334 17470352 chr2R 17470414 17470432 4 80 0.0 1.0 0.5 2.7 98 chr2R 17470334 intron qkr54B + chr2R 17470383 intron qkr54B + chr2R 17470432 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-712 605 chr2R 17485919 17485932 chr2R 17490689 17490702 F-element 4 4770 5.5 2.0 3.8 0.8 4783 chr2R 17485919 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488310 intron NT5E-2 + chr2R 17490702 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-712 606 chr2R 17556441 17556459 chr2R 17556526 17556544 9 85 1.0 3.5 2.2 2.8 103 chr2R 17556441 intergenic MESR4 + chr2R 17556492 intergenic MESR4 + chr2R 17556544 intergenic MESR4 +,Klp54D + chr2R_9_17555001 chr2R_17555001 RAL-712 607 chr2R 17561600 17561616 chr2R 17561679 17561695 5 79 1.0 2.5 1.8 1.8 95 chr2R 17561600 exon Klp54D + chr2R 17561648 intron Klp54D + chr2R 17561695 intron Klp54D + chr2R_5_17560001 chr2R_17560001 RAL-712 608 chr2R 17629605 17629626 chr2R 17629684 17629705 7 79 3.0 1.0 2.0 2.3 100 chr2R 17629605 intron,intron CG10936 -,rhi - chr2R 17629655 intron,intron CG10936 -,rhi - chr2R 17629705 intron,intron CG10936 -,rhi - chr2R_7_17625001 chr2R_17625001 RAL-712 609 chr2R 17748927 17748960 chr2R 17749010 17749043 9 83 3.0 0.5 1.8 3.2 116 chr2R 17748927 intergenic CG10931 + chr2R 17748985 5` UTR CG10931 + chr2R 17749043 exon CG10931 + chr2R_9_17745001 chr2R_17745001 RAL-712 610 chr2R 17784027 17784054 chr2R 17784267 17784295 pogo 11 241 4.5 4.0 4.2 2.1 268 chr2R 17784027 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-712 611 chr2R 17835035 17835063 chr2R 17835129 17835157 9 94 3.0 2.5 2.8 2.4 122 chr2R 17835035 intron grh + chr2R 17835096 intron grh + chr2R 17835157 intron grh + chr2R_9_17835001 chr2R_17835001 RAL-712 612 chr2R 17849802 17849831 chr2R 17849959 17849988 7 157 1.0 1.0 1.0 3.5 186 chr2R 17849802 intron olf186-F + chr2R 17849895 intron olf186-F + chr2R 17849988 intron olf186-F + chr2R_7_17845001 chr2R_17845001 RAL-712 613 chr2R 18045667 18045703 chr2R 18046019 18046053 jockey 6 352 2.0 0.5 1.2 2.7 386 chr2R 18045667 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046053 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-712 614 chr2R 18124345 18124367 chr2R 18124422 18124444 6 77 5.0 2.0 3.5 1.3 99 chr2R 18124345 intron stau - chr2R 18124394 intron stau - chr2R 18124444 intron stau - chr2R_6_18120001 chr2R_18120001 RAL-712 615 chr2R 18376731 18376753 chr2R 18376821 18376843 6 90 4.5 0.5 2.5 1.7 112 chr2R 18376731 intergenic not near genes chr2R 18376787 intergenic not near genes chr2R 18376843 intergenic not near genes chr2R_6_18375001 chr2R_18375001 RAL-712 616 chr2R 18432202 18432232 chr2R 18432284 18432314 4 82 3.0 3.0 3.0 1.0 112 chr2R 18432202 intron CG30118 - chr2R 18432258 intron CG30118 - chr2R 18432314 intron CG30118 - chr2R_4_18430001 chr2R_18430001 RAL-712 617 chr2R 18528194 18528221 chr2R 18528279 18528306 6 84 2.0 2.0 2.0 2.0 112 chr2R 18528194 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528306 intron CG10924 + chr2R_6_18525001 chr2R_18525001 RAL-712 618 chr2R 18541633 18541659 chr2R 18541815 18541841 11 182 2.0 3.5 2.8 2.9 208 chr2R 18541633 intron Rgk2 + chr2R 18541737 intron Rgk2 + chr2R 18541841 intron Rgk2 + chr2R_11_18540001 chr2R_18540001 RAL-712 619 chr2R 18570739 18570767 chr2R 18570872 18570901 9 134 1.0 2.5 1.8 3.2 162 chr2R 18570739 intron GEFmeso - chr2R 18570820 intron GEFmeso - chr2R 18570901 intron GEFmeso - chr2R_9_18570001 chr2R_18570001 RAL-712 620 chr2R 18575795 18575829 chr2R 18581983 18582017 3S18 8 6188 0.0 4.5 2.2 2.5 6222 chr2R 18575795 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-712 621 chr2R 18590870 18590901 chr2R 18600021 18600053 roo 6 9151 2.5 5.0 3.8 1.2 9183 chr2R 18590870 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-712 622 chr2R 18641014 18641044 chr2R 18641122 18641152 6 108 1.5 1.5 1.5 2.4 138 chr2R 18641014 3` UTR SP2637 - chr2R 18641083 3` UTR SP2637 - chr2R 18641152 3` UTR SP2637 - chr2R_6_18640001 chr2R_18640001 RAL-712 623 chr2R 18678534 18678537 chr2R 18678654 18678657 4 120 4.0 0.0 2.0 1.3 123 chr2R 18678534 intergenic CG44434 -,CG44435 - chr2R 18678596 intergenic CG44434 -,CG44435 - chr2R 18678657 intergenic CG44434 -,CG44435 - chr2R_4_18675001 chr2R_18675001 RAL-712 624 chr2R 18689297 18689307 chr2R 18689875 18689889 4 580 5.0 5.0 5.0 0.7 592 chr2R 18689297 intron Sik3 + chr2R 18689593 intron Sik3 + chr2R 18689889 intron Sik3 + chr2R_4_18685001 chr2R_18685001 RAL-712 625 chr2R 18871654 18871678 chr2R 18871738 18871763 12 85 3.5 0.0 1.8 4.3 109 chr2R 18871654 intergenic not near genes chr2R 18871708 intergenic not near genes chr2R 18871763 intergenic not near genes chr2R_12_18870001 chr2R_18870001 RAL-712 626 chr2R 18926506 18926524 chr2R 18926593 18926611 8 87 2.5 1.5 2.0 2.7 105 chr2R 18926506 intron sano + chr2R 18926558 intron sano + chr2R 18926611 intron sano + chr2R_8_18925001 chr2R_18925001 RAL-712 627 chr2R 18953159 18953182 chr2R 18953246 18953269 6 86 5.0 0.5 2.8 1.6 110 chr2R 18953159 intron sano + chr2R 18953214 intron sano + chr2R 18953269 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-712 628 chr2R 19026048 19026057 chr2R 19026149 19026158 4 101 5.5 0.0 2.8 1.1 110 chr2R 19026048 intron 5-HT1B - chr2R 19026103 intron 5-HT1B - chr2R 19026158 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-712 629 chr2R 19067726 19067752 chr2R 19067802 19067828 7 76 1.5 0.0 0.8 3.9 102 chr2R 19067726 intron 5-HT1A + chr2R 19067777 intron 5-HT1A + chr2R 19067828 intron 5-HT1A + chr2R_7_19065001 chr2R_19065001 RAL-712 630 chr2R 19072113 19072133 chr2R 19072184 19072203 7 74 3.0 1.5 2.2 2.2 90 chr2R 19072113 intron 5-HT1A + chr2R 19072158 intron 5-HT1A + chr2R 19072203 intron 5-HT1A + chr2R_7_19070001 chr2R_19070001 RAL-712 631 chr2R 19078142 19078169 chr2R 19078231 19078259 10 91 3.0 4.5 3.8 2.1 117 chr2R 19078142 intron 5-HT1A + chr2R 19078200 intron 5-HT1A + chr2R 19078259 intron 5-HT1A + chr2R_10_19075001 chr2R_19075001 RAL-712 632 chr2R 19078803 19078823 chr2R 19078889 19078919 7 94 0.5 1.5 1.0 3.5 116 chr2R 19078803 intron 5-HT1A + chr2R 19078861 intron 5-HT1A + chr2R 19078919 intron 5-HT1A + chr2R_7_19075001 chr2R_19075001 RAL-712 633 chr2R 19104887 19104906 chr2R 19104992 19105011 4 105 1.0 2.0 1.5 1.6 124 chr2R 19104887 intron 5-HT1A + chr2R 19104949 intron 5-HT1A + chr2R 19105011 intron 5-HT1A + chr2R_4_19100001 chr2R_19100001 RAL-712 634 chr2R 19148680 19148704 chr2R 19148765 19148789 8 85 0.5 1.5 1.0 4.0 109 chr2R 19148680 intron ena + chr2R 19148734 intron ena + chr2R 19148789 intron ena + chr2R_8_19145001 chr2R_19145001 RAL-712 635 chr2R 19209188 19209212 chr2R 19209278 19209303 4 91 3.0 0.5 1.8 1.4 115 chr2R 19209188 intron hppy + chr2R 19209246 intron hppy + chr2R 19209303 intron hppy + chr2R_4_19205001 chr2R_19205001 RAL-712 636 chr2R 19280157 19280179 chr2R 19286162 19286184 11 6005 29.0 32.5 30.8 0.3 6027 chr2R 19280157 3` UTR rib + chr2R 19283170 exon CG11906 - chr2R 19286184 exon CG10474 - chr2R_11_19280001 chr2R_19280001 RAL-712 637 chr2R 19588771 19588782 chr2R 19588849 19588860 6 78 1.0 5.0 3.0 1.5 89 chr2R 19588771 intron sm - chr2R 19588816 intron sm - chr2R 19588860 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-712 638 chr2R 19680604 19680623 chr2R 19680682 19680701 6 78 1.5 2.0 1.8 2.1 97 chr2R 19680604 intergenic CG15127 - chr2R 19680652 intergenic CG15127 - chr2R 19680701 intergenic CG15127 - chr2R_6_19680001 chr2R_19680001 RAL-712 639 chr2R 19774010 19774042 chr2R 19774122 19774155 7 113 1.0 1.0 1.0 3.5 145 chr2R 19774010 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774155 intergenic not near genes chr2R_7_19770001 chr2R_19770001 RAL-712 640 chr2R 19776594 19776628 chr2R 19779917 19779951 jockey 11 3322 2.0 3.5 2.8 2.9 3357 chr2R 19776594 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-712 641 chr2R 19914844 19914861 chr2R 19922256 19922273 mdg1 5 7412 1.5 1.5 1.5 2.0 7429 chr2R 19914844 intergenic not near genes chr2R 19918558 intergenic not near genes chr2R 19922273 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-712 642 chr2R 19957432 19957463 chr2R 19962630 19962665 copia 5 5201 1.0 2.0 1.5 2.0 5233 chr2R 19957432 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-712 643 chr2R 20080600 20080625 chr2R 20080677 20080701 9 77 0.0 3.5 1.8 3.2 101 chr2R 20080600 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080701 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-712 644 chr2R 20095400 20095425 chr2R 20095515 20095540 4 115 2.0 3.0 2.5 1.1 140 chr2R 20095400 intergenic not near genes chr2R 20095470 intergenic not near genes chr2R 20095540 intergenic not near genes chr2R_4_20095001 chr2R_20095001 RAL-712 645 chr2R 20227671 20227707 chr2R 20227770 20227805 5 99 4.5 0.0 2.2 1.6 134 chr2R 20227671 intergenic not near genes chr2R 20227738 intergenic not near genes chr2R 20227805 intergenic not near genes chr2R_5_20225001 chr2R_20225001 RAL-712 646 chr2R 20405069 20405105 chr2R 20405156 20405191 8 86 2.0 0.5 1.2 3.6 122 chr2R 20405069 intergenic not near genes chr2R 20405130 intergenic not near genes chr2R 20405191 intergenic not near genes chr2R_8_20405001 chr2R_20405001 RAL-712 647 chr2R 20480580 20480609 chr2R 20480672 20480701 12 92 0.0 3.5 1.8 4.3 121 chr2R 20480580 intergenic not near genes chr2R 20480640 intergenic not near genes chr2R 20480701 intergenic not near genes chr2R_12_20480001 chr2R_20480001 RAL-712 648 chr2R 20541998 20542016 chr2R 20542076 20542094 7 78 2.0 2.0 2.0 2.3 96 chr2R 20541998 intergenic not near genes chr2R 20542046 intergenic not near genes chr2R 20542094 intergenic not near genes chr2R_7_20540001 chr2R_20540001 RAL-712 649 chr2R 20698109 20698124 chr2R 20698225 20698239 4 116 0.0 0.5 0.2 3.3 130 chr2R 20698109 intergenic dpr + chr2R 20698174 intergenic dpr + chr2R 20698239 intergenic dpr + chr2R_4_20695001 chr2R_20695001 RAL-712 650 chr2R 20739444 20739477 chr2R 20744212 20744245 F-element 4 4768 1.0 3.5 2.2 1.2 4801 chr2R 20739444 intron dpr + chr2R 20741844 intron dpr + chr2R 20744245 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-712 651 chr2R 20777004 20777014 chr2R 20777153 20777162 6 148 3.5 10.5 7.0 0.8 158 chr2R 20777004 exon CG43710 - chr2R 20777083 exon CG43710 - chr2R 20777162 exon CG43710 - chr2R_6_20775001 chr2R_20775001 RAL-712 652 chr2R 20783316 20783327 chr2R 20788088 20788099 F-element 4 4772 2.5 5.0 3.8 0.8 4783 chr2R 20783316 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788099 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-712 653 chr2R 20830535 20830567 chr2R 20830614 20830647 13 80 3.5 1.0 2.2 4.1 112 chr2R 20830535 intron,intron insc -,sktl - chr2R 20830591 intron,intron insc -,sktl - chr2R 20830647 intron,intron insc -,sktl - chr2R_13_20830001 chr2R_20830001 RAL-712 654 chr2R 21031757 21031762 chr2R 21031846 21031851 4 88 5.5 2.5 4.0 0.8 94 chr2R 21031757 intergenic not near genes chr2R 21031804 intergenic not near genes chr2R 21031851 intergenic not near genes chr2R_4_21030001 chr2R_21030001 RAL-712 655 chr2R 21151128 21151146 chr2R 21153761 21153779 opus 5 2632 2.5 3.5 3.0 1.2 2651 chr2R 21151128 intron CG30389 - chr2R 21152454 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-712 656 chr2R 21188219 21188235 chr2R 21188300 21188316 7 81 4.5 3.0 3.8 1.5 97 chr2R 21188219 exon tud + chr2R 21188268 intron tud + chr2R 21188316 intron tud + chr2R_7_21185001 chr2R_21185001 RAL-712 657 chr2R 21253687 21253704 chr2R 21253812 21253830 5 126 1.5 3.0 2.2 1.6 143 chr2R 21253687 intergenic not near genes chr2R 21253758 intergenic not near genes chr2R 21253830 intergenic not near genes chr2R_5_21250001 chr2R_21250001 RAL-712 658 chr2R 21410079 21410104 chr2R 21410158 21410183 5 79 4.0 0.0 2.0 1.7 104 chr2R 21410079 intron Sdc - chr2R 21410131 intron Sdc - chr2R 21410183 intron Sdc - chr2R_5_21410001 chr2R_21410001 RAL-712 659 chr2R 21592852 21592858 chr2R 21592932 21592939 4 82 5.5 11.5 8.5 0.4 87 chr2R 21592852 intergenic not near genes chr2R 21592896 intergenic not near genes chr2R 21592939 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-712 660 chr2R 21660877 21660907 chr2R 21660970 21661000 8 93 4.5 4.0 4.2 1.5 123 chr2R 21660877 intergenic pirk - chr2R 21660938 intergenic pirk - chr2R 21661000 3` UTR pirk - chr2R_8_21660001 chr2R_21660001 RAL-712 661 chr2R 21699914 21699941 chr2R 21700002 21700029 10 88 1.0 1.5 1.2 4.5 115 chr2R 21699914 intron HmgZ - chr2R 21699972 intron HmgZ - chr2R 21700029 intron HmgZ - chr2R_10_21695001 chr2R_21695001 RAL-712 662 chr2R 21738281 21738304 chr2R 21747441 21747462 roo 6 9159 2.5 2.0 2.2 1.9 9181 chr2R 21738281 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747462 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-712 663 chr2R 21753089 21753107 chr2R 21753574 21753592 roo 7 485 3.0 2.0 2.5 2.0 503 chr2R 21753089 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753592 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-712 664 chr2R 21809524 21809551 chr2R 21817764 21817790 roo 9 8240 1.5 2.0 1.8 3.2 8266 chr2R 21809524 intergenic not near genes chr2R 21813657 intergenic not near genes chr2R 21817790 intergenic not near genes chr2R_9_21810001 chr2R_21810001 RAL-712 665 chr2R 21857349 21857372 chr2R 21857440 21857463 5 91 0.5 4.0 2.2 1.6 114 chr2R 21857349 intergenic not near genes chr2R 21857406 intergenic not near genes chr2R 21857463 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-712 666 chr2R 21886130 21886167 chr2R 21886209 21886244 14 78 2.5 0.0 1.2 6.4 114 chr2R 21886130 intron Fili + chr2R 21886187 intron Fili + chr2R 21886244 intron Fili + chr2R_14_21885001 chr2R_21885001 RAL-712 667 chr2R 22003090 22003120 chr2R 22003176 22003204 7 86 1.5 0.0 0.8 3.9 114 chr2R 22003090 intron CG34370 - chr2R 22003147 intron CG34370 - chr2R 22003204 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-712 668 chr2R 22037785 22037806 chr2R 22037867 22037888 7 82 0.0 0.0 0.0 7.0 103 chr2R 22037785 intron CG34370 - chr2R 22037836 intron CG34370 - chr2R 22037888 intron CG34370 - chr2R_7_22035001 chr2R_22035001 RAL-712 669 chr2R 22072683 22072714 chr2R 22072768 22072798 17 85 1.5 5.5 3.5 3.8 115 chr2R 22072683 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_17_22070001 chr2R_22070001 RAL-712 670 chr2R 22185680 22185706 chr2R 22185779 22185805 6 99 0.5 0.5 0.5 4.0 125 chr2R 22185680 3` UTR MED16 + chr2R 22185742 3` UTR MED16 + chr2R 22185805 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-712 671 chr2R 22360380 22360398 chr2R 22360813 22360831 jockey 5 433 4.5 3.5 4.0 1.0 451 chr2R 22360380 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-712 672 chr2R 22460390 22460405 chr2R 22460469 22460484 4 79 4.0 7.0 5.5 0.6 94 chr2R 22460390 intron CG10384 + chr2R 22460437 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-712 673 chr2R 22461818 22461854 chr2R 22461894 22461930 6 76 3.0 2.5 2.8 1.6 112 chr2R 22461818 intron CG10384 + chr2R 22461874 intron CG10384 + chr2R 22461930 intron CG10384 + chr2R_6_22460001 chr2R_22460001 RAL-712 674 chr2R 22525746 22525779 chr2R 22529300 22529334 jockey 6 3555 1.5 2.5 2.0 2.0 3588 chr2R 22525746 intron px - chr2R 22527540 intron px - chr2R 22529334 intron px - chr2R_6_22525001 chr2R_22525001 RAL-712 675 chr2R 22549371 22549381 chr2R 22549453 22549455 5 80 0.0 5.5 2.8 1.3 84 chr2R 22549371 intron px - chr2R 22549413 intron px - chr2R 22549455 intron px - chr2R_5_22545001 chr2R_22545001 RAL-712 676 chr2R 22574173 22574188 chr2R 22574253 22574268 4 79 0.5 3.0 1.8 1.4 95 chr2R 22574173 intron dnr1 - chr2R 22574220 intron dnr1 - chr2R 22574268 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-712 677 chr2R 22588150 22588157 chr2R 22588245 22588252 4 94 4.0 5.0 4.5 0.7 102 chr2R 22588150 intron dnr1 - chr2R 22588201 intron dnr1 - chr2R 22588252 intron dnr1 - chr2R_4_22585001 chr2R_22585001 RAL-712 678 chr2R 22623451 22623484 chr2R 22623591 22623624 12 139 1.0 2.5 1.8 4.3 173 chr2R 22623451 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623624 intron CG33143 + chr2R_12_22620001 chr2R_22620001 RAL-712 679 chr2R 22739350 22739370 chr2R 22739428 22739448 7 78 5.0 1.5 3.2 1.7 98 chr2R 22739350 intron jbug - chr2R 22739399 intron jbug - chr2R 22739448 intron jbug - chr2R_7_22735001 chr2R_22735001 RAL-712 680 chr2R 22752423 22752429 chr2R 22752529 22752535 6 106 2.0 5.0 3.5 1.3 112 chr2R 22752423 intron CG42260 - chr2R 22752479 intron CG42260 - chr2R 22752535 intron CG42260 - chr2R_6_22750001 chr2R_22750001 RAL-712 681 chr2R 22774961 22775001 chr2R 22775379 22775419 jockey 10 418 3.5 5.5 4.5 1.8 458 chr2R 22774961 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-712 682 chr2R 22971495 22971531 chr2R 22971574 22971609 10 79 1.0 1.0 1.0 5.0 114 chr2R 22971495 intergenic not near genes chr2R 22971552 intergenic not near genes chr2R 22971609 intergenic not near genes chr2R_10_22970001 chr2R_22970001 RAL-712 683 chr2R 23134837 23134852 chr2R 23134920 23134934 7 83 4.0 5.0 4.5 1.3 97 chr2R 23134837 intergenic not near genes chr2R 23134886 intergenic not near genes chr2R 23134934 intergenic not near genes chr2R_7_23130001 chr2R_23130001 RAL-712 684 chr2R 23332693 23332723 chr2R 23333359 23333389 7 665 3.0 2.5 2.8 1.8 696 chr2R 23332693 intergenic not near genes chr2R 23333041 intergenic not near genes chr2R 23333389 intergenic not near genes chr2R_7_23330001 chr2R_23330001 RAL-712 685 chr2R 23346530 23346551 chr2R 23346606 23346627 7 75 0.0 3.0 1.5 2.8 97 chr2R 23346530 intron CG3502 - chr2R 23346578 intron CG3502 - chr2R 23346627 intron CG3502 - chr2R_7_23345001 chr2R_23345001 RAL-712 686 chr2R 23349609 23349633 chr2R 23349875 23349899 9 266 5.0 4.0 4.5 1.6 290 chr2R 23349609 intergenic not near genes chr2R 23349754 intergenic not near genes chr2R 23349899 intergenic not near genes chr2R_9_23345001 chr2R_23345001 RAL-712 687 chr2R 23356274 23356308 chr2R 23356363 23356397 10 89 4.5 4.5 4.5 1.8 123 chr2R 23356274 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356397 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-712 688 chr2R 23429068 23429104 chr2R 23429226 23429262 7 158 1.5 1.0 1.2 3.2 194 chr2R 23429068 intron CG9815 - chr2R 23429165 intron CG9815 - chr2R 23429262 intron CG9815 - chr2R_7_23425001 chr2R_23425001 RAL-712 689 chr2R 23518197 23518209 chr2R 23518275 23518287 5 78 1.0 3.0 2.0 1.7 90 chr2R 23518197 intergenic not near genes chr2R 23518242 intergenic not near genes chr2R 23518287 intergenic not near genes chr2R_5_23515001 chr2R_23515001 RAL-712 690 chr2R 23529575 23529605 chr2R 23537151 23537181 412 8 7575 4.5 4.5 4.5 1.5 7606 chr2R 23529575 intron bw - chr2R 23533378 intron bw - chr2R 23537181 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-712 691 chr2R 23567020 23567047 chr2R 23567111 23567137 15 91 2.0 2.0 2.0 5.0 117 chr2R 23567020 intron apt + chr2R 23567078 intron apt + chr2R 23567137 intron apt + chr2R_15_23565001 chr2R_23565001 RAL-712 692 chr2R 23576255 23576274 chr2R 23576388 23576407 7 133 1.0 1.0 1.0 3.5 152 chr2R 23576255 intron apt + chr2R 23576331 intron apt + chr2R 23576407 intron apt + chr2R_7_23575001 chr2R_23575001 RAL-712 693 chr2R 23607036 23607184 chr2R 23607117 23607277 10 83 3.0 4.0 3.5 2.2 241 chr2R 23607036 intron CG17664 - chr2R 23607156 intron CG17664 - chr2R 23607277 intron CG17664 - chr2R_10_23605001 chr2R_23605001 RAL-712 694 chr2R 23718294 23718314 chr2R 23718435 23718456 8 142 18.5 19.5 19.0 0.4 162 chr2R 23718294 intron Sesn + chr2R 23718375 intron Sesn + chr2R 23718456 intron Sesn + chr2R_8_23715001 chr2R_23715001 RAL-712 695 chr2R 23726227 23726258 chr2R 23726317 23726348 9 90 0.5 3.5 2.0 3.0 121 chr2R 23726227 intron Sesn + chr2R 23726288 intron Sesn + chr2R 23726348 intron Sesn + chr2R_9_23725001 chr2R_23725001 RAL-712 696 chr2R 23776164 23776174 chr2R 23776240 23776249 5 76 2.5 5.0 3.8 1.0 85 chr2R 23776164 intron CG9850 - chr2R 23776206 intron CG9850 - chr2R 23776249 intron CG9850 - chr2R_5_23775001 chr2R_23775001 RAL-712 697 chr2R 24031389 24031410 chr2R 24031472 24031493 7 83 4.0 1.5 2.8 1.8 104 chr2R 24031389 5` UTR CG30172 - chr2R 24031441 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-712 698 chr2R 24045873 24045903 chr2R 24045956 24045984 10 83 2.0 2.5 2.2 3.1 111 chr2R 24045873 intron tsr - chr2R 24045928 intron tsr - chr2R 24045984 intron tsr - chr2R_10_24045001 chr2R_24045001 RAL-712 699 chr2R 24147072 24147097 chr2R 24154649 24154675 412 11 7577 5.0 2.5 3.8 2.3 7603 chr2R 24147072 intron Dat + chr2R 24150874 intron Dat + chr2R 24154675 intron Dat + chr2R_11_24150001 chr2R_24150001 RAL-712 700 chr2R 24177237 24177264 chr2R 24184721 24184749 412 7 7485 4.0 4.0 4.0 1.4 7512 chr2R 24177237 3` UTR Nop60B + chr2R 24180993 intron Nop60B + chr2R 24184749 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-712 701 chr2R 24282265 24282299 chr2R 24282344 24282378 6 79 1.0 4.5 2.8 1.6 113 chr2R 24282265 intron nvy + chr2R 24282322 intron nvy + chr2R 24282378 intron nvy + chr2R_6_24280001 chr2R_24280001 RAL-712 702 chr2R 24290559 24290588 chr2R 24290642 24290671 12 82 2.0 1.5 1.8 4.3 112 chr2R 24290559 3` UTR nvy + chr2R 24290615 3` UTR nvy + chr2R 24290671 3` UTR nvy + chr2R_12_24290001 chr2R_24290001 RAL-712 703 chr2R 24323618 24323654 chr2R 24323710 24323747 11 93 2.5 2.0 2.2 3.4 129 chr2R 24323618 intergenic not near genes chr2R 24323682 intergenic not near genes chr2R 24323747 intergenic not near genes chr2R_11_24320001 chr2R_24320001 RAL-712 704 chr2R 24353427 24353458 chr2R 24361789 24361820 roo 6 8362 2.0 2.5 2.2 1.9 8393 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361820 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-712 705 chr2R 24383828 24383858 chr2R 24383909 24383939 14 81 0.5 1.5 1.0 7.0 111 chr2R 24383828 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383939 exon mAChR-A - chr2R_14_24380001 chr2R_24380001 RAL-712 706 chr2R 24542594 24542625 chr2R 24542690 24542721 8 96 2.0 0.5 1.2 3.6 127 chr2R 24542594 intron,intron CG4622 -,ITP + chr2R 24542658 intron,intron CG4622 -,ITP + chr2R 24542721 intron,intron CG4622 -,ITP + chr2R_8_24540001 chr2R_24540001 RAL-712 707 chr2R 24630550 24630581 chr2R 24630749 24630780 7 199 0.5 2.0 1.2 3.2 230 chr2R 24630550 intron CG13594 - chr2R 24630665 intron CG13594 - chr2R 24630780 intron CG13594 - chr2R_7_24630001 chr2R_24630001 RAL-712 708 chr2R 24647574 24647617 chr2R 24655145 24655174 412 5 7559 0.0 3.0 1.5 2.0 7600 chr2R 24647574 intergenic not near genes chr2R 24651374 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-712 709 chr2R 24722368 24722389 chr2R 24722450 24722471 6 82 1.0 4.5 2.8 1.6 103 chr2R 24722368 intron Mid1 - chr2R 24722420 intron Mid1 - chr2R 24722471 intron Mid1 - chr2R_6_24720001 chr2R_24720001 RAL-712 710 chr2R 24727890 24727909 chr2R 24735398 24735417 mdg1 8 7508 5.5 7.0 6.2 1.1 7527 chr2R 24727890 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735417 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-712 711 chr2R 24747251 24747277 chr2R 24747331 24747355 11 80 2.5 2.0 2.2 3.4 104 chr2R 24747251 intron CG30421 + chr2R 24747303 intron CG30421 + chr2R 24747355 intron CG30421 + chr2R_11_24745001 chr2R_24745001 RAL-712 712 chr2R 24763608 24763642 chr2R 24765584 24765617 G2 22 1976 4.0 4.5 4.2 4.2 2009 chr2R 24763608 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765617 exon CG3894 + chr2R_22_24760001 chr2R_24760001 RAL-712 713 chr2R 24768001 24768019 chr2R 24768084 24768105 6 86 1.0 2.0 1.5 2.4 104 chr2R 24768001 5` UTR GstE12 - chr2R 24768053 5` UTR GstE12 - chr2R 24768105 5` UTR GstE12 - chr2R_6_24765001 chr2R_24765001 RAL-712 714 chr2R 24837962 24837972 chr2R 24838043 24838053 4 82 5.5 2.0 3.8 0.8 91 chr2R 24837962 intergenic not near genes chr2R 24838008 intergenic not near genes chr2R 24838053 intergenic not near genes chr2R_4_24835001 chr2R_24835001 RAL-712 715 chr2R 25018713 25018743 chr2R 25018876 25018906 15 163 3.0 3.0 3.0 3.8 193 chr2R 25018713 intron uzip + chr2R 25018810 intron uzip + chr2R 25018906 intron uzip + chr2R_15_25015001 chr2R_25015001 RAL-712 716 chr2R 25101277 25101309 chr2R 25101379 25101411 8 102 3.5 1.5 2.5 2.3 134 chr2R 25101277 intron lov - chr2R 25101344 intron lov - chr2R 25101411 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-712 717 chr2R 25102523 25102550 chr2R 25102692 25102719 7 169 1.0 3.0 2.0 2.3 196 chr2R 25102523 intron lov - chr2R 25102621 intron lov - chr2R 25102719 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-712 718 chr2R 25104779 25104805 chr2R 25104904 25104928 7 125 2.0 3.5 2.8 1.8 149 chr2R 25104779 intron lov - chr2R 25104854 intron lov - chr2R 25104928 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-712 719 chr2R 25131029 25131046 chr2R 25131106 25131121 4 76 3.0 1.5 2.2 1.2 92 chr2R 25131029 intron lov - chr2R 25131075 intron lov - chr2R 25131121 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-712 720 chr2R 25141656 25141683 chr2R 25159346 25159373 roo 9 17690 4.5 3.5 4.0 1.8 17717 chr2R 25141656 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_9_25150001 chr2R_25150001 RAL-712 721 chr2R 25201240 25201255 chr2R 25201366 25201381 6 126 1.0 3.5 2.2 1.9 141 chr2R 25201240 intron CG9380 - chr2R 25201310 intron CG9380 - chr2R 25201381 intron CG9380 - chr2R_6_25200001 chr2R_25200001 RAL-712 722 chr3L 52911 52933 chr3L 52995 53017 8 84 0.5 4.0 2.2 2.5 106 chr3L 52911 intergenic not near genes chr3L 52964 intergenic not near genes chr3L 53017 intergenic not near genes chr3L_8_50001 chr3L_50001 RAL-712 723 chr3L 68987 69011 chr3L 69072 69098 9 87 1.0 3.0 2.0 3.0 111 chr3L 68987 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_9_65001 chr3L_65001 RAL-712 724 chr3L 291021 291051 chr3L 291334 291365 9 314 2.5 1.5 2.0 3.0 344 chr3L 291021 exon RhoGEF3 + chr3L 291193 intron RhoGEF3 + chr3L 291365 exon RhoGEF3 + chr3L_9_290001 chr3L_290001 RAL-712 725 chr3L 338807 338837 chr3L 338901 338931 10 94 2.5 2.5 2.5 2.9 124 chr3L 338807 intron,intron Ptpmeg +,mthl10 - chr3L 338869 intron,intron Ptpmeg +,mthl10 - chr3L 338931 intron,intron Ptpmeg +,mthl10 - chr3L_10_335001 chr3L_335001 RAL-712 726 chr3L 363154 363189 chr3L 363258 363293 16 103 2.5 1.5 2.0 5.3 139 chr3L 363154 exon CG1233 + chr3L 363224 exon CG1233 + chr3L 363293 exon CG1233 + chr3L_16_360001 chr3L_360001 RAL-712 727 chr3L 366207 366224 chr3L 366440 366455 4 232 5.5 0.0 2.8 1.1 248 chr3L 366207 exon CG13884 - chr3L 366331 5` UTR CG13884 - chr3L 366455 intergenic CG13884 -,trh - chr3L_4_365001 chr3L_365001 RAL-712 728 chr3L 402691 402718 chr3L 409744 409771 297 14 7052 6.5 8.0 7.2 1.7 7080 chr3L 402691 intergenic not near genes chr3L 406231 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_14_405001 chr3L_405001 RAL-712 729 chr3L 491639 491666 chr3L 491721 491748 7 82 2.0 1.5 1.8 2.5 109 chr3L 491639 intron klar - chr3L 491694 intron klar - chr3L 491748 intron klar - chr3L_7_490001 chr3L_490001 RAL-712 730 chr3L 534779 534806 chr3L 535035 535062 6 256 1.0 1.0 1.0 3.0 283 chr3L 534779 intron klar - chr3L 534920 intron klar - chr3L 535062 intron klar - chr3L_6_530001 chr3L_530001 RAL-712 731 chr3L 789916 789929 chr3L 790401 790414 roo 4 485 3.0 1.0 2.0 1.3 498 chr3L 789916 intergenic not near genes chr3L 790165 intergenic not near genes chr3L 790414 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-712 732 chr3L 802565 802566 chr3L 11777678 11777678 4 10975112 12.0 3.0 7.5 0.5 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-712 733 chr3L 819335 819352 chr3L 819412 819429 7 78 0.5 0.0 0.2 5.8 94 chr3L 819335 intergenic not near genes chr3L 819382 intergenic not near genes chr3L 819429 intergenic not near genes chr3L_7_815001 chr3L_815001 RAL-712 734 chr3L 858008 858028 chr3L 866488 866509 Tirant 5 8481 2.5 2.0 2.2 1.6 8501 chr3L 858008 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866509 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-712 735 chr3L 925175 925202 chr3L 932601 932628 mdg1 8 7426 2.0 2.0 2.0 2.7 7453 chr3L 925175 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-712 736 chr3L 933910 933943 chr3L 934013 934046 7 103 4.0 3.0 3.5 1.6 136 chr3L 933910 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-712 737 chr3L 939774 939798 chr3L 940895 940919 jockey 10 1121 5.0 2.0 3.5 2.2 1145 chr3L 939774 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940919 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-712 738 chr3L 961027 961043 chr3L 961117 961136 6 92 1.0 2.0 1.5 2.4 109 chr3L 961027 intron Glut1 + chr3L 961082 intron Glut1 + chr3L 961136 intron Glut1 + chr3L_6_960001 chr3L_960001 RAL-712 739 chr3L 1000272 1000300 chr3L 1000355 1000380 9 83 2.5 1.5 2.0 3.0 108 chr3L 1000272 intron trio - chr3L 1000326 intron trio - chr3L 1000380 intron trio - chr3L_9_1000001 chr3L_1000001 RAL-712 740 chr3L 1015037 1015054 chr3L 1015149 1015166 5 112 3.5 3.5 3.5 1.1 129 chr3L 1015037 intron trio - chr3L 1015102 intron trio - chr3L 1015166 intron trio - chr3L_5_1015001 chr3L_1015001 RAL-712 741 chr3L 1031587 1031617 chr3L 1031662 1031687 4 74 2.5 3.0 2.8 1.1 100 chr3L 1031587 intron trio - chr3L 1031637 intron trio - chr3L 1031687 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-712 742 chr3L 1042963 1042987 chr3L 1043041 1043065 6 78 2.0 1.5 1.8 2.1 102 chr3L 1042963 intron bab1 - chr3L 1043014 intron bab1 - chr3L 1043065 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-712 743 chr3L 1154130 1154160 chr3L 1163280 1163310 roo 9 9150 0.5 1.5 1.0 4.5 9180 chr3L 1154130 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163310 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-712 744 chr3L 1189624 1189657 chr3L 1189710 1189743 13 85 2.0 2.0 2.0 4.3 119 chr3L 1189624 5` UTR CG13912 + chr3L 1189684 5` UTR CG13912 + chr3L 1189743 5` UTR CG13912 + chr3L_13_1185001 chr3L_1185001 RAL-712 745 chr3L 1219603 1219620 chr3L 1227335 1227353 412 8 7732 2.5 2.5 2.5 2.3 7750 chr3L 1219603 intron mwh + chr3L 1223478 intron mwh + chr3L 1227353 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-712 746 chr3L 1347157 1347193 chr3L 1347242 1347276 12 84 2.0 3.0 2.5 3.4 119 chr3L 1347157 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347276 intron Ptp61F - chr3L_12_1345001 chr3L_1345001 RAL-712 747 chr3L 1364048 1364063 chr3L 1364134 1364149 6 86 0.0 4.0 2.0 2.0 101 chr3L 1364048 intron Ptp61F - chr3L 1364098 intron Ptp61F - chr3L 1364149 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-712 748 chr3L 1385186 1385210 chr3L 1385274 1385298 8 88 2.5 4.0 3.2 1.9 112 chr3L 1385186 intron,intron Ptp61F -,ru + chr3L 1385242 intron,intron Ptp61F -,ru + chr3L 1385298 intron,intron Ptp61F -,ru + chr3L_8_1385001 chr3L_1385001 RAL-712 749 chr3L 1396739 1396757 chr3L 1396823 1396841 5 84 4.5 3.0 3.8 1.0 102 chr3L 1396739 intron Ptp61F - chr3L 1396790 intron Ptp61F - chr3L 1396841 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-712 750 chr3L 1415782 1415805 chr3L 1415864 1415887 8 82 4.0 4.5 4.2 1.5 105 chr3L 1415782 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415887 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-712 751 chr3L 1506004 1506031 chr3L 1513601 1513628 17.6 8 7597 2.5 2.0 2.2 2.5 7624 chr3L 1506004 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-712 752 chr3L 1726639 1726644 chr3L 1726719 1726724 5 80 2.5 7.5 5.0 0.8 85 chr3L 1726639 intron drpr - chr3L 1726682 intron drpr - chr3L 1726724 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-712 753 chr3L 1740862 1740886 chr3L 1741107 1741131 pogo 9 245 1.0 2.0 1.5 3.6 269 chr3L 1740862 intron Gk + chr3L 1740996 intron Gk + chr3L 1741131 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-712 754 chr3L 1885163 1885186 chr3L 1885243 1885266 8 80 0.0 2.0 1.0 4.0 103 chr3L 1885163 intergenic Aprt -,Tmhs + chr3L 1885214 intergenic Aprt -,Tmhs + chr3L 1885266 intergenic Aprt -,Tmhs + chr3L_8_1885001 chr3L_1885001 RAL-712 755 chr3L 1988840 1988875 chr3L 1989019 1989054 12 178 2.5 3.0 2.8 3.2 214 chr3L 1988840 intergenic not near genes chr3L 1988947 intergenic not near genes chr3L 1989054 intergenic not near genes chr3L_12_1985001 chr3L_1985001 RAL-712 756 chr3L 2108251 2108272 chr3L 2113455 2113476 copia 7 5203 2.0 2.0 2.0 2.3 5225 chr3L 2108251 intron sls - chr3L 2110864 intron sls - chr3L 2113476 intron sls - chr3L_7_2110001 chr3L_2110001 RAL-712 757 chr3L 2139207 2139228 chr3L 2139288 2139308 8 81 5.0 3.0 4.0 1.6 101 chr3L 2139207 intron zormin - chr3L 2139258 intron zormin - chr3L 2139308 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-712 758 chr3L 2168772 2168808 chr3L 2168863 2168898 12 91 1.0 3.0 2.0 4.0 126 chr3L 2168772 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_12_2165001 chr3L_2165001 RAL-712 759 chr3L 2308006 2308030 chr3L 2308112 2308136 7 106 2.5 2.0 2.2 2.2 130 chr3L 2308006 intergenic not near genes chr3L 2308071 intergenic not near genes chr3L 2308136 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-712 760 chr3L 2351491 2351512 chr3L 2352045 2352066 4 554 1.5 2.0 1.8 1.4 575 chr3L 2351491 intergenic not near genes chr3L 2351778 intergenic not near genes chr3L 2352066 intergenic not near genes chr3L_4_2350001 chr3L_2350001 RAL-712 761 chr3L 2447507 2447533 chr3L 2456663 2456689 roo 7 9155 1.0 4.5 2.8 1.8 9182 chr3L 2447507 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-712 762 chr3L 2683945 2683978 chr3L 2684021 2684054 6 76 2.5 1.5 2.0 2.0 109 chr3L 2683945 intron Fife - chr3L 2684000 intron Fife - chr3L 2684054 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-712 763 chr3L 2707925 2707959 chr3L 2708012 2708046 4 87 1.0 4.5 2.8 1.1 121 chr3L 2707925 intron Fife - chr3L 2707986 intron Fife - chr3L 2708046 intron Fife - chr3L_4_2705001 chr3L_2705001 RAL-712 764 chr3L 2719539 2719556 chr3L 2719641 2719656 7 102 2.0 1.0 1.5 2.8 117 chr3L 2719539 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719656 3` UTR Mrtf - chr3L_7_2715001 chr3L_2715001 RAL-712 765 chr3L 2866346 2866357 chr3L 2866423 2866433 4 76 4.0 1.5 2.8 1.1 87 chr3L 2866346 intron CG43444 - chr3L 2866390 intron CG43444 - chr3L 2866433 intron CG43444 - chr3L_4_2865001 chr3L_2865001 RAL-712 766 chr3L 2927844 2927872 chr3L 2936121 2936147 Tirant 8 8276 2.0 1.5 1.8 2.9 8303 chr3L 2927844 intron Shab + chr3L 2931996 intron Shab + chr3L 2936147 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-712 767 chr3L 3027602 3027629 chr3L 3028603 3028630 11 1001 1.5 2.5 2.0 3.7 1028 chr3L 3027602 intergenic not near genes chr3L 3028116 intergenic not near genes chr3L 3028630 intergenic not near genes chr3L_11_3025001 chr3L_3025001 RAL-712 768 chr3L 3040337 3040349 chr3L 3042126 3042137 S-element 4 1788 2.0 3.5 2.8 1.1 1800 chr3L 3040337 3` UTR CG2162 + chr3L 3041237 intergenic not near genes chr3L 3042137 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-712 769 chr3L 3061282 3061312 chr3L 3069865 3069895 Tirant 4 8582 0.5 1.5 1.0 2.0 8613 chr3L 3061282 intron CG32486 - chr3L 3065588 intron CG32486 - chr3L 3069895 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-712 770 chr3L 3075917 3075940 chr3L 3075993 3076016 7 76 3.0 4.0 3.5 1.6 99 chr3L 3075917 intron CG11486 + chr3L 3075966 intron CG11486 + chr3L 3076016 intron CG11486 + chr3L_7_3075001 chr3L_3075001 RAL-712 771 chr3L 3246891 3246895 chr3L 3246980 3246984 4 88 0.0 2.5 1.2 1.8 93 chr3L 3246891 intergenic not near genes chr3L 3246938 intergenic not near genes chr3L 3246984 intergenic not near genes chr3L_4_3245001 chr3L_3245001 RAL-712 772 chr3L 3281448 3281472 chr3L 3281943 3281967 Doc 13 495 4.5 10.0 7.2 1.6 519 chr3L 3281448 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-712 773 chr3L 3436296 3436309 chr3L 3436375 3436388 4 79 0.5 0.5 0.5 2.7 92 chr3L 3436296 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436388 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-712 774 chr3L 3470160 3470185 chr3L 3470236 3470261 7 76 0.0 1.5 0.8 3.9 101 chr3L 3470160 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470261 intron CG14971 - chr3L_7_3470001 chr3L_3470001 RAL-712 775 chr3L 3475074 3475101 chr3L 3475518 3475544 jockey 6 443 0.5 3.0 1.8 2.1 470 chr3L 3475074 intron CG42324 + chr3L 3475309 intron CG42324 + chr3L 3475544 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-712 776 chr3L 3481582 3481598 chr3L 3481794 3481810 7 212 1.5 3.5 2.5 2.0 228 chr3L 3481582 intron CG42324 + chr3L 3481696 intron CG42324 + chr3L 3481810 intron CG42324 + chr3L_7_3480001 chr3L_3480001 RAL-712 777 chr3L 3484378 3484402 chr3L 3484554 3484578 6 176 0.0 3.0 1.5 2.4 200 chr3L 3484378 intron,exon CG42324 +,CG43074 - chr3L 3484478 intron,exon CG42324 +,CG43074 - chr3L 3484578 intron,exon CG42324 +,CG43074 - chr3L_6_3480001 chr3L_3480001 RAL-712 778 chr3L 3585598 3585626 chr3L 3585690 3585718 7 92 0.0 2.5 1.2 3.2 120 chr3L 3585598 intron Eip63E + chr3L 3585658 intron Eip63E + chr3L 3585718 intron Eip63E + chr3L_7_3585001 chr3L_3585001 RAL-712 779 chr3L 3601300 3601329 chr3L 3606611 3606640 copia 5 5311 5.0 1.0 3.0 1.2 5340 chr3L 3601300 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-712 780 chr3L 3777066 3777066 chr3L 22908066 22908067 9 19131001 4.5 13.5 9.0 0.9 19131001 chr3L 3777066 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_9_13340001 chr3L_13340001 RAL-712 781 chr3L 3890963 3890991 chr3L 3891044 3891072 6 81 0.5 0.0 0.2 5.0 109 chr3L 3890963 intergenic not near genes chr3L 3891018 intergenic not near genes chr3L 3891072 intergenic not near genes chr3L_6_3890001 chr3L_3890001 RAL-712 782 chr3L 3921393 3921425 chr3L 3921657 3921689 8 264 3.0 1.5 2.2 2.5 296 chr3L 3921393 intron Eip63F-1 - chr3L 3921541 intron Eip63F-1 - chr3L 3921689 intron Eip63F-1 - chr3L_8_3920001 chr3L_3920001 RAL-712 783 chr3L 4032855 4032885 chr3L 4032946 4032976 11 91 1.5 2.0 1.8 3.9 121 chr3L 4032855 exon,5` UTR Gr64d +,Gr64e + chr3L 4032916 exon,5` UTR Gr64d +,Gr64e + chr3L 4032976 exon,5` UTR Gr64d +,Gr64e + chr3L_11_4030001 chr3L_4030001 RAL-712 784 chr3L 4146812 4146839 chr3L 4146894 4146921 5 82 0.0 1.5 0.8 2.8 109 chr3L 4146812 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146921 intergenic not near genes chr3L_5_4145001 chr3L_4145001 RAL-712 785 chr3L 4157604 4157637 chr3L 4158005 4158038 8 401 2.5 0.5 1.5 3.2 434 chr3L 4157604 intron nab - chr3L 4157821 intron nab - chr3L 4158038 intron nab - chr3L_8_4155001 chr3L_4155001 RAL-712 786 chr3L 4195138 4195168 chr3L 4195242 4195272 6 104 4.5 1.5 3.0 1.5 134 chr3L 4195138 exon CG43367 + chr3L 4195205 intron CG43367 + chr3L 4195272 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-712 787 chr3L 4229738 4229763 chr3L 4229831 4229857 4 94 3.0 3.5 3.2 1.0 119 chr3L 4229738 intron ImpL2 - chr3L 4229798 intron ImpL2 - chr3L 4229857 intron ImpL2 - chr3L_4_4225001 chr3L_4225001 RAL-712 788 chr3L 4231158 4231186 chr3L 4231251 4231279 8 93 2.0 2.0 2.0 2.7 121 chr3L 4231158 intron ImpL2 - chr3L 4231218 intron ImpL2 - chr3L 4231279 intron ImpL2 - chr3L_8_4230001 chr3L_4230001 RAL-712 789 chr3L 4444104 4444136 chr3L 4444184 4444216 6 80 0.0 1.0 0.5 4.0 112 chr3L 4444104 intergenic not near genes chr3L 4444160 intergenic not near genes chr3L 4444216 intergenic not near genes chr3L_6_4440001 chr3L_4440001 RAL-712 790 chr3L 4599518 4599533 chr3L 4599655 4599670 7 137 0.0 3.5 1.8 2.5 152 chr3L 4599518 intron Src64B - chr3L 4599594 intron Src64B - chr3L 4599670 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-712 791 chr3L 4699300 4699314 chr3L 4699379 4699394 4 80 1.5 2.0 1.8 1.4 94 chr3L 4699300 intron RhoGEF64C + chr3L 4699347 intron RhoGEF64C + chr3L 4699394 intron RhoGEF64C + chr3L_4_4695001 chr3L_4695001 RAL-712 792 chr3L 4748705 4748721 chr3L 4748796 4748812 7 91 4.5 1.5 3.0 1.8 107 chr3L 4748705 intron RhoGEF64C + chr3L 4748758 intron RhoGEF64C + chr3L 4748812 intron RhoGEF64C + chr3L_7_4745001 chr3L_4745001 RAL-712 793 chr3L 4784958 4784987 chr3L 4785167 4785195 4 208 1.0 0.0 0.5 2.7 237 chr3L 4784958 intron RhoGEF64C + chr3L 4785076 intron RhoGEF64C + chr3L 4785195 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-712 794 chr3L 4840408 4840418 chr3L 4840516 4840527 5 109 1.0 0.0 0.5 3.3 119 chr3L 4840408 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840527 intergenic CG13707 - chr3L_5_4840001 chr3L_4840001 RAL-712 795 chr3L 4858302 4858334 chr3L 4858391 4858424 16 89 3.5 5.5 4.5 2.9 122 chr3L 4858302 intergenic not near genes chr3L 4858363 intergenic not near genes chr3L 4858424 intergenic not near genes chr3L_16_4855001 chr3L_4855001 RAL-712 796 chr3L 4901126 4901153 chr3L 4907316 4907343 diver 5 6190 1.5 0.0 0.8 2.8 6217 chr3L 4901126 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-712 797 chr3L 5034158 5034183 chr3L 5043310 5043335 roo 4 9152 0.5 1.0 0.8 2.2 9177 chr3L 5034158 intron Con - chr3L 5038746 intron Con - chr3L 5043335 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-712 798 chr3L 5059939 5059962 chr3L 5060026 5060050 5 88 1.5 3.0 2.2 1.6 111 chr3L 5059939 intron Con - chr3L 5059994 intron Con - chr3L 5060050 intron Con - chr3L_5_5055001 chr3L_5055001 RAL-712 799 chr3L 5064679 5064687 chr3L 5064756 5064767 4 78 1.5 0.0 0.8 2.2 88 chr3L 5064679 intron Con - chr3L 5064723 intron Con - chr3L 5064767 intron Con - chr3L_4_5060001 chr3L_5060001 RAL-712 800 chr3L 5066300 5066314 chr3L 5066399 5066413 4 99 0.0 0.0 0.0 4.0 113 chr3L 5066300 intron Con - chr3L 5066356 intron Con - chr3L 5066413 intron Con - chr3L_4_5065001 chr3L_5065001 RAL-712 801 chr3L 5212242 5212268 chr3L 5212323 5212351 8 82 2.5 2.0 2.2 2.5 109 chr3L 5212242 intron shep - chr3L 5212296 intron shep - chr3L 5212351 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-712 802 chr3L 5327471 5327477 chr3L 5327556 5327562 5 85 1.5 3.0 2.2 1.6 91 chr3L 5327471 intergenic not near genes chr3L 5327516 intergenic not near genes chr3L 5327562 intergenic not near genes chr3L_5_5325001 chr3L_5325001 RAL-712 803 chr3L 5346368 5346398 chr3L 5346460 5346490 8 92 3.0 1.0 2.0 2.7 122 chr3L 5346368 5` UTR lama - chr3L 5346429 5` UTR lama - chr3L 5346490 5` UTR lama - chr3L_8_5345001 chr3L_5345001 RAL-712 804 chr3L 5351117 5351135 chr3L 5351202 5351220 4 85 0.0 3.5 1.8 1.4 103 chr3L 5351117 intron lama - chr3L 5351168 intron lama - chr3L 5351220 intron lama - chr3L_4_5350001 chr3L_5350001 RAL-712 805 chr3L 5388201 5388233 chr3L 5388524 5388557 7 324 4.5 2.5 3.5 1.6 356 chr3L 5388201 intergenic not near genes chr3L 5388379 intergenic not near genes chr3L 5388557 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-712 806 chr3L 5537724 5537755 chr3L 5538059 5538097 jockey 8 341 2.5 2.5 2.5 2.3 373 chr3L 5537724 intergenic not near genes chr3L 5537910 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-712 807 chr3L 5727182 5727200 chr3L 5727650 5727672 7 472 0.5 2.0 1.2 3.2 490 chr3L 5727182 intron sif + chr3L 5727427 intron sif + chr3L 5727672 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-712 808 chr3L 5771131 5771146 chr3L 5771476 5771492 4 346 13.5 20.5 17.0 0.2 361 chr3L 5771131 intron scny + chr3L 5771312 intron scny + chr3L 5771492 intron scny + chr3L_4_5770001 chr3L_5770001 RAL-712 809 chr3L 5910037 5910063 chr3L 5910278 5910304 pogo 5 241 1.5 4.5 3.0 1.2 267 chr3L 5910037 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-712 810 chr3L 5926324 5926349 chr3L 5926514 5926538 BS 10 189 6.0 4.5 5.2 1.6 214 chr3L 5926324 intron Vap-33B + chr3L 5926431 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-712 811 chr3L 5939687 5939710 chr3L 5939783 5939806 5 96 1.5 5.0 3.2 1.2 119 chr3L 5939687 intron CG33993 - chr3L 5939746 intron CG33993 - chr3L 5939806 intron CG33993 - chr3L_5_5935001 chr3L_5935001 RAL-712 812 chr3L 5980588 5980616 chr3L 5980675 5980703 10 87 4.5 2.0 3.2 2.4 115 chr3L 5980588 intergenic not near genes chr3L 5980646 intergenic not near genes chr3L 5980703 intergenic not near genes chr3L_10_5980001 chr3L_5980001 RAL-712 813 chr3L 6001678 6001688 chr3L 6004378 6004388 jockey 4 2700 6.5 1.5 4.0 0.8 2710 chr3L 6001678 intron PVRAP + chr3L 6003033 intron PVRAP + chr3L 6004388 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-712 814 chr3L 6052652 6052663 chr3L 6052737 6052748 4 85 6.0 6.0 6.0 0.6 96 chr3L 6052652 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052748 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-712 815 chr3L 6220913 6220945 chr3L 6230065 6230097 roo 12 9152 1.5 4.0 2.8 3.2 9184 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-712 816 chr3L 6315014 6315038 chr3L 6315110 6315125 4 94 0.5 0.0 0.2 3.3 111 chr3L 6315014 intergenic not near genes chr3L 6315070 intergenic not near genes chr3L 6315125 intergenic not near genes chr3L_4_6315001 chr3L_6315001 RAL-712 817 chr3L 6351038 6351069 chr3L 6351117 6351148 8 79 2.0 5.5 3.8 1.7 110 chr3L 6351038 intron CG13300 - chr3L 6351093 intron CG13300 - chr3L 6351148 intron CG13300 - chr3L_8_6350001 chr3L_6350001 RAL-712 818 chr3L 6442154 6442182 chr3L 6442368 6442398 8 214 17.5 16.0 16.8 0.4 244 chr3L 6442154 intron CG42747 + chr3L 6442276 intron CG42747 + chr3L 6442398 intron CG42747 + chr3L_8_6440001 chr3L_6440001 RAL-712 819 chr3L 6573655 6573688 chr3L 6573758 6573791 10 103 1.5 3.0 2.2 3.1 136 chr3L 6573655 intron,intron CG18769 +,jv - chr3L 6573723 intron,intron CG18769 +,jv - chr3L 6573791 intron,intron CG18769 +,jv - chr3L_10_6570001 chr3L_6570001 RAL-712 820 chr3L 6582769 6582799 chr3L 6582868 6582898 8 98 0.5 2.5 1.5 3.2 129 chr3L 6582769 intron,intron CG18769 +,jv - chr3L 6582834 intron,intron CG18769 +,jv - chr3L 6582898 intron,intron CG18769 +,jv - chr3L_8_6580001 chr3L_6580001 RAL-712 821 chr3L 6604288 6604296 chr3L 6604364 6604372 5 76 0.0 2.5 1.2 2.3 84 chr3L 6604288 intron CG8368 + chr3L 6604330 intron CG8368 + chr3L 6604372 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-712 822 chr3L 6668966 6668998 chr3L 6669046 6669079 8 81 1.0 0.0 0.5 5.3 113 chr3L 6668966 intergenic not near genes chr3L 6669022 intergenic not near genes chr3L 6669079 intergenic not near genes chr3L_8_6665001 chr3L_6665001 RAL-712 823 chr3L 6808890 6808924 chr3L 6809355 6809389 5 465 2.0 2.5 2.2 1.6 499 chr3L 6808890 intergenic not near genes chr3L 6809140 intergenic not near genes chr3L 6809389 intergenic not near genes chr3L_5_6805001 chr3L_6805001 RAL-712 824 chr3L 6855933 6855954 chr3L 6860717 6860738 Doc 6 4784 0.5 2.5 1.5 2.4 4805 chr3L 6855933 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-712 825 chr3L 6887517 6887545 chr3L 6895009 6895037 roo 5 7492 2.0 2.5 2.2 1.6 7520 chr3L 6887517 intergenic not near genes chr3L 6891277 intergenic not near genes chr3L 6895037 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-712 826 chr3L 6942060 6942087 chr3L 6942159 6942186 6 99 2.5 3.5 3.0 1.5 126 chr3L 6942060 intergenic not near genes chr3L 6942123 intergenic not near genes chr3L 6942186 intergenic not near genes chr3L_6_6940001 chr3L_6940001 RAL-712 827 chr3L 6963565 6963593 chr3L 6963650 6963678 13 84 3.0 4.0 3.5 2.9 113 chr3L 6963565 intron sgl - chr3L 6963622 intron sgl - chr3L 6963678 intron sgl - chr3L_13_6960001 chr3L_6960001 RAL-712 828 chr3L 6974504 6974521 chr3L 6974605 6974622 6 101 0.0 4.0 2.0 2.0 118 chr3L 6974504 intron Galphai - chr3L 6974563 intron Galphai - chr3L 6974622 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-712 829 chr3L 6994885 6994891 chr3L 6995496 6995502 BS 4 611 0.0 0.5 0.2 3.3 617 chr3L 6994885 intergenic bin + chr3L 6995194 intergenic not near genes chr3L 6995502 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-712 830 chr3L 7057740 7057761 chr3L 7058543 7058565 10 803 2.5 2.5 2.5 2.9 825 chr3L 7057740 intergenic not near genes chr3L 7058152 intergenic not near genes chr3L 7058565 intergenic CG8641 - chr3L_10_7055001 chr3L_7055001 RAL-712 831 chr3L 7090026 7090055 chr3L 7090107 7090136 13 81 2.5 1.0 1.8 4.6 110 chr3L 7090026 intergenic not near genes chr3L 7090081 intergenic not near genes chr3L 7090136 intergenic not near genes chr3L_13_7090001 chr3L_7090001 RAL-712 832 chr3L 7100432 7100463 chr3L 7100518 7100550 8 87 3.5 5.0 4.2 1.5 118 chr3L 7100432 intron form3 + chr3L 7100491 intron form3 + chr3L 7100550 intron form3 + chr3L_8_7100001 chr3L_7100001 RAL-712 833 chr3L 7112583 7112611 chr3L 7112670 7112698 7 87 3.0 4.0 3.5 1.6 115 chr3L 7112583 intron form3 + chr3L 7112640 intron form3 + chr3L 7112698 intron form3 + chr3L_7_7110001 chr3L_7110001 RAL-712 834 chr3L 7150888 7150898 chr3L 7150962 7150968 4 74 0.5 1.5 1.0 2.0 80 chr3L 7150888 intron corn - chr3L 7150928 intron corn - chr3L 7150968 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-712 835 chr3L 7227380 7227399 chr3L 7227516 7227535 4 136 1.5 3.5 2.5 1.1 155 chr3L 7227380 intergenic not near genes chr3L 7227458 intergenic not near genes chr3L 7227535 intergenic not near genes chr3L_4_7225001 chr3L_7225001 RAL-712 836 chr3L 7285328 7285341 chr3L 7285440 7285453 5 112 4.0 0.5 2.2 1.6 125 chr3L 7285328 intron unc-13-4A - chr3L 7285390 intron unc-13-4A - chr3L 7285453 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-712 837 chr3L 7299481 7299501 chr3L 7299608 7299628 5 127 1.5 1.0 1.2 2.3 147 chr3L 7299481 intron unc-13-4A - chr3L 7299554 intron unc-13-4A - chr3L 7299628 intron unc-13-4A - chr3L_5_7295001 chr3L_7295001 RAL-712 838 chr3L 7358297 7358321 chr3L 7359580 7359605 6 1283 17.0 14.5 15.8 0.4 1308 chr3L 7358297 exon pst - chr3L 7358951 exon pst - chr3L 7359605 intron pst - chr3L_6_7355001 chr3L_7355001 RAL-712 839 chr3L 7377318 7377348 chr3L 7380423 7380453 297 8 3104 2.0 3.0 2.5 2.3 3135 chr3L 7377318 intron SMSr - chr3L 7378886 intron SMSr - chr3L 7380453 intron SMSr - chr3L_8_7375001 chr3L_7375001 RAL-712 840 chr3L 7444022 7444046 chr3L 7444120 7444145 5 98 2.5 0.0 1.2 2.3 123 chr3L 7444022 intron CG42458 + chr3L 7444084 intron CG42458 + chr3L 7444145 intron CG42458 + chr3L_5_7440001 chr3L_7440001 RAL-712 841 chr3L 7572292 7572314 chr3L 7572378 7572401 8 86 1.5 3.5 2.5 2.3 109 chr3L 7572292 intergenic not near genes chr3L 7572346 intergenic not near genes chr3L 7572401 intergenic not near genes chr3L_8_7570001 chr3L_7570001 RAL-712 842 chr3L 7574211 7574238 chr3L 7574291 7574318 9 79 3.5 0.0 1.8 3.2 107 chr3L 7574211 intergenic not near genes chr3L 7574264 intergenic not near genes chr3L 7574318 intergenic not near genes chr3L_9_7570001 chr3L_7570001 RAL-712 843 chr3L 7576221 7576231 chr3L 7576309 7576319 4 88 1.0 5.0 3.0 1.0 98 chr3L 7576221 intergenic not near genes chr3L 7576270 intergenic not near genes chr3L 7576319 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-712 844 chr3L 7581624 7581652 chr3L 7581708 7581735 7 83 2.5 4.5 3.5 1.6 111 chr3L 7581624 intergenic not near genes chr3L 7581680 intergenic not near genes chr3L 7581735 intergenic not near genes chr3L_7_7580001 chr3L_7580001 RAL-712 845 chr3L 7591147 7591176 chr3L 7591236 7591267 4 90 2.0 2.0 2.0 1.3 120 chr3L 7591147 intergenic CG7716 - chr3L 7591207 intergenic CG7716 - chr3L 7591267 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-712 846 chr3L 7607795 7607806 chr3L 7608080 7608091 5 285 4.0 2.5 3.2 1.2 296 chr3L 7607795 intron CG33275 + chr3L 7607943 intron CG33275 + chr3L 7608091 intron CG33275 + chr3L_5_7605001 chr3L_7605001 RAL-712 847 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 6.0 3.0 4.5 1.1 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-712 848 chr3L 7793713 7793744 chr3L 7800765 7800796 297 9 7052 2.5 2.0 2.2 2.8 7083 chr3L 7793713 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-712 849 chr3L 7803126 7803144 chr3L 7803204 7803222 4 78 1.5 0.0 0.8 2.2 96 chr3L 7803126 intron CG32369 - chr3L 7803174 intron CG32369 - chr3L 7803222 intron CG32369 - chr3L_4_7800001 chr3L_7800001 RAL-712 850 chr3L 7876108 7876129 chr3L 7876187 7876208 5 79 0.0 0.0 0.0 5.0 100 chr3L 7876108 intron CG32365 + chr3L 7876158 intron CG32365 + chr3L 7876208 intron CG32365 + chr3L_5_7875001 chr3L_7875001 RAL-712 851 chr3L 7883758 7883768 chr3L 7883914 7883925 4 157 4.5 0.0 2.2 1.2 167 chr3L 7883758 intron CG32365 + chr3L 7883842 intron CG32365 + chr3L 7883925 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-712 852 chr3L 7886520 7886547 chr3L 7889038 7889065 Stalker4 8 2518 0.0 0.5 0.2 6.7 2545 chr3L 7886520 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-712 853 chr3L 7916839 7916862 chr3L 7926010 7926033 roo 4 9171 1.5 2.0 1.8 1.4 9194 chr3L 7916839 3` UTR syd - chr3L 7921436 intron syd - chr3L 7926033 3` UTR syd - chr3L_4_7920001 chr3L_7920001 RAL-712 854 chr3L 7985361 7985395 chr3L 7987689 7987723 NOF 4 2328 0.0 2.5 1.2 1.8 2362 chr3L 7985361 intron nmo + chr3L 7986542 intron nmo + chr3L 7987723 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-712 855 chr3L 8019700 8019737 chr3L 8024112 8024153 NOF 6 4415 1.5 1.0 1.2 2.7 4453 chr3L 8019700 intron nmo + chr3L 8021926 intron nmo + chr3L 8024153 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-712 856 chr3L 8157403 8157422 chr3L 8157486 8157505 4 83 0.0 3.0 1.5 1.6 102 chr3L 8157403 intron CG42445 - chr3L 8157454 intron CG42445 - chr3L 8157505 intron CG42445 - chr3L_4_8155001 chr3L_8155001 RAL-712 857 chr3L 8208130 8208157 chr3L 8208262 8208289 10 132 3.5 1.5 2.5 2.9 159 chr3L 8208130 intergenic not near genes chr3L 8208210 intergenic not near genes chr3L 8208289 intergenic not near genes chr3L_10_8205001 chr3L_8205001 RAL-712 858 chr3L 8243816 8243847 chr3L 8243899 8243930 6 83 2.5 1.5 2.0 2.0 114 chr3L 8243816 intron Dscam4 + chr3L 8243873 intron Dscam4 + chr3L 8243930 intron Dscam4 + chr3L_6_8240001 chr3L_8240001 RAL-712 859 chr3L 8295789 8295810 chr3L 8295947 8295968 6 158 2.5 2.0 2.2 1.9 179 chr3L 8295789 intergenic CG7201 - chr3L 8295878 intergenic not near genes chr3L 8295968 intergenic not near genes chr3L_6_8295001 chr3L_8295001 RAL-712 860 chr3L 8317592 8317596 chr3L 22908066 22908067 11 14590471 0.0 13.5 6.8 1.4 14590475 chr3L 8317592 intergenic not near genes chr3L 15612830 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_11_15610001 chr3L_15610001 RAL-712 861 chr3L 8392762 8392782 chr3L 8392849 8392869 6 86 0.5 3.5 2.0 2.0 107 chr3L 8392762 intergenic Jon66Cii -,Jon66Ci + chr3L 8392816 intergenic Jon66Cii -,Jon66Ci + chr3L 8392869 exon Jon66Cii - chr3L_6_8390001 chr3L_8390001 RAL-712 862 chr3L 8395833 8395864 chr3L 8395929 8395960 7 94 2.5 4.5 3.5 1.6 127 chr3L 8395833 intergenic CG7120 + chr3L 8395896 intergenic CG7120 + chr3L 8395960 intergenic CG7120 + chr3L_7_8395001 chr3L_8395001 RAL-712 863 chr3L 8644198 8644230 chr3L 8644275 8644307 10 76 0.5 0.5 0.5 6.7 109 chr3L 8644198 intergenic not near genes chr3L 8644252 intergenic not near genes chr3L 8644307 intergenic not near genes chr3L_10_8640001 chr3L_8640001 RAL-712 864 chr3L 8658726 8658759 chr3L 8658827 8658860 9 101 1.0 2.5 1.8 3.2 134 chr3L 8658726 intergenic not near genes chr3L 8658793 intergenic not near genes chr3L 8658860 intergenic not near genes chr3L_9_8655001 chr3L_8655001 RAL-712 865 chr3L 8691160 8691190 chr3L 8691242 8691272 4 82 1.5 1.5 1.5 1.6 112 chr3L 8691160 intergenic not near genes chr3L 8691216 intergenic not near genes chr3L 8691272 intergenic not near genes chr3L_4_8690001 chr3L_8690001 RAL-712 866 chr3L 8849208 8849235 chr3L 8849288 8849315 7 79 2.5 0.0 1.2 3.2 107 chr3L 8849208 intron dally + chr3L 8849262 intron dally + chr3L 8849315 intron dally + chr3L_7_8845001 chr3L_8845001 RAL-712 867 chr3L 9076931 9076958 chr3L 9084491 9084518 412 8 7560 3.5 3.0 3.2 1.9 7587 chr3L 9076931 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084518 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-712 868 chr3L 9130558 9130579 chr3L 9134318 9134340 412 7 3761 2.0 3.5 2.8 1.8 3782 chr3L 9130558 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-712 869 chr3L 9164696 9164732 chr3L 9166163 9166198 hobo 5 1467 1.5 1.5 1.5 2.0 1502 chr3L 9164696 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166198 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-712 870 chr3L 9219249 9219270 chr3L 9219920 9219941 jockey 9 671 4.5 3.0 3.8 1.9 692 chr3L 9219249 intergenic not near genes chr3L 9219595 intergenic not near genes chr3L 9219941 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-712 871 chr3L 9270617 9270650 chr3L 9278372 9278404 roo 6 7754 3.0 0.5 1.8 2.1 7787 chr3L 9270617 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278404 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-712 872 chr3L 9299413 9299442 chr3L 9299547 9299574 11 134 2.5 2.0 2.2 3.4 161 chr3L 9299413 intergenic not near genes chr3L 9299494 intergenic not near genes chr3L 9299574 intergenic not near genes chr3L_11_9295001 chr3L_9295001 RAL-712 873 chr3L 9348473 9348704 chr3L 9348975 9349064 4 431 0.0 0.0 0.0 4.0 591 chr3L 9348473 intergenic PGRP-LC + chr3L 9348768 intergenic PGRP-LC + chr3L 9349064 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-712 874 chr3L 9443520 9443539 chr3L 9445311 9445329 S-element 5 1791 1.5 2.5 2.0 1.7 1809 chr3L 9443520 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445329 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-712 875 chr3L 9493622 9493646 chr3L 9493699 9493724 5 78 1.5 2.0 1.8 1.8 102 chr3L 9493622 intergenic not near genes chr3L 9493673 intergenic not near genes chr3L 9493724 intergenic not near genes chr3L_5_9490001 chr3L_9490001 RAL-712 876 chr3L 9501704 9501734 chr3L 9502190 9502220 roo 7 486 1.0 3.5 2.2 2.2 516 chr3L 9501704 intron path - chr3L 9501962 intron path - chr3L 9502220 intron path - chr3L_7_9500001 chr3L_9500001 RAL-712 877 chr3L 9502466 9502643 chr3L 9502557 9502723 5 82 1.0 10.5 5.8 0.7 257 chr3L 9502466 intron path - chr3L 9502594 intron path - chr3L 9502723 intron path - chr3L_5_9500001 chr3L_9500001 RAL-712 878 chr3L 9513442 9513470 chr3L 9513529 9513557 6 86 1.0 1.0 1.0 3.0 115 chr3L 9513442 intergenic CG33702 - chr3L 9513500 intergenic CG33702 - chr3L 9513557 intergenic CG33702 - chr3L_6_9510001 chr3L_9510001 RAL-712 879 chr3L 9519656 9519680 chr3L 9519749 9519773 4 93 2.5 2.5 2.5 1.1 117 chr3L 9519656 intron CG33700 - chr3L 9519714 intron CG33700 - chr3L 9519773 intron CG33700 - chr3L_4_9515001 chr3L_9515001 RAL-712 880 chr3L 9526483 9526508 chr3L 9528163 9528188 Doc 8 1680 0.5 2.0 1.2 3.6 1705 chr3L 9526483 intergenic not near genes chr3L 9527336 intergenic not near genes chr3L 9528188 intergenic not near genes chr3L_8_9525001 chr3L_9525001 RAL-712 881 chr3L 9533759 9533785 chr3L 9541315 9541345 412 4 7559 3.5 3.5 3.5 0.9 7586 chr3L 9533759 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541345 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-712 882 chr3L 9548477 9548511 chr3L 9548555 9548589 6 78 2.5 1.5 2.0 2.0 112 chr3L 9548477 intron CG42673 + chr3L 9548533 intron CG42673 + chr3L 9548589 intron CG42673 + chr3L_6_9545001 chr3L_9545001 RAL-712 883 chr3L 9571901 9571927 chr3L 9572249 9572275 jockey 9 348 3.0 3.5 3.2 2.1 374 chr3L 9571901 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572275 intron CG42673 + chr3L_9_9570001 chr3L_9570001 RAL-712 884 chr3L 9572299 9572336 chr3L 9572378 9572415 5 79 1.5 0.5 1.0 2.5 116 chr3L 9572299 intron CG42673 + chr3L 9572357 intron CG42673 + chr3L 9572415 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-712 885 chr3L 9575908 9575935 chr3L 9580986 9581013 jockey 7 5078 2.5 3.0 2.8 1.8 5105 chr3L 9575908 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-712 886 chr3L 9637853 9637876 chr3L 9637935 9637958 8 82 4.5 4.5 4.5 1.5 105 chr3L 9637853 intron fry - chr3L 9637906 intron fry - chr3L 9637958 intron fry - chr3L_8_9635001 chr3L_9635001 RAL-712 887 chr3L 9809728 9809743 chr3L 9809805 9809820 9 76 4.5 3.5 4.0 1.8 92 chr3L 9809728 intergenic not near genes chr3L 9809774 intergenic not near genes chr3L 9809820 intergenic not near genes chr3L_9_9805001 chr3L_9805001 RAL-712 888 chr3L 9929673 9929701 chr3L 9938451 9938478 roo 5 8778 2.0 5.0 3.5 1.1 8805 chr3L 9929673 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938478 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-712 889 chr3L 10049498 10049523 chr3L 10049666 10049691 8 168 2.0 2.5 2.2 2.5 193 chr3L 10049498 intron dpr6 + chr3L 10049594 intron dpr6 + chr3L 10049691 intron dpr6 + chr3L_8_10045001 chr3L_10045001 RAL-712 890 chr3L 10286281 10286310 chr3L 10286359 10286388 6 78 3.5 1.5 2.5 1.7 107 chr3L 10286281 intergenic not near genes chr3L 10286334 intergenic not near genes chr3L 10286388 intergenic not near genes chr3L_6_10285001 chr3L_10285001 RAL-712 891 chr3L 10303202 10303209 chr3L 10303278 10303285 4 76 7.5 3.0 5.2 0.6 83 chr3L 10303202 intergenic not near genes chr3L 10303244 intergenic not near genes chr3L 10303285 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-712 892 chr3L 10308758 10308776 chr3L 10308835 10308853 5 77 3.0 2.0 2.5 1.4 95 chr3L 10308758 intergenic not near genes chr3L 10308806 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-712 893 chr3L 10310349 10310380 chr3L 10310446 10310477 7 97 3.5 2.0 2.8 1.8 128 chr3L 10310349 intergenic not near genes chr3L 10310413 intergenic not near genes chr3L 10310477 intergenic not near genes chr3L_7_10310001 chr3L_10310001 RAL-712 894 chr3L 10348654 10348667 chr3L 10348771 10348783 4 117 3.5 0.0 1.8 1.4 129 chr3L 10348654 intron CR44327 + chr3L 10348718 intron CR44327 + chr3L 10348783 intron CR44327 + chr3L_4_10345001 chr3L_10345001 RAL-712 895 chr3L 10386393 10386412 chr3L 10386469 10386489 4 76 1.0 2.0 1.5 1.6 96 chr3L 10386393 intergenic CR45245 + chr3L 10386441 intergenic CR45245 + chr3L 10386489 5` UTR CR45245 + chr3L_4_10385001 chr3L_10385001 RAL-712 896 chr3L 10414943 10414977 chr3L 10417315 10417349 Doc 5 2372 3.0 1.0 2.0 1.7 2406 chr3L 10414943 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-712 897 chr3L 10417566 10417595 chr3L 10417643 10417672 7 77 1.5 1.0 1.2 3.2 106 chr3L 10417566 intergenic not near genes chr3L 10417619 intergenic not near genes chr3L 10417672 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-712 898 chr3L 10553502 10553521 chr3L 10553699 10553718 4 197 1.0 2.0 1.5 1.6 216 chr3L 10553502 intron A2bp1 + chr3L 10553610 intron A2bp1 + chr3L 10553718 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-712 899 chr3L 10613180 10613197 chr3L 10613475 10613492 5 295 0.0 3.0 1.5 2.0 312 chr3L 10613180 intergenic not near genes chr3L 10613336 intergenic not near genes chr3L 10613492 intergenic not near genes chr3L_5_10610001 chr3L_10610001 RAL-712 900 chr3L 10621865 10621876 chr3L 10621952 10621963 4 87 1.0 2.5 1.8 1.4 98 chr3L 10621865 intergenic not near genes chr3L 10621914 intergenic not near genes chr3L 10621963 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-712 901 chr3L 10658079 10658212 chr3L 10658155 10658339 11 99 0.5 0.5 0.5 7.3 260 chr3L 10658079 intron CG32066 - chr3L 10658209 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-712 902 chr3L 10694922 10694933 chr3L 10695014 10695025 5 92 1.5 2.0 1.8 1.8 103 chr3L 10694922 intron NijA - chr3L 10694974 intron NijA - chr3L 10695025 exon NijA - chr3L_5_10690001 chr3L_10690001 RAL-712 903 chr3L 10940075 10940094 chr3L 10940152 10940171 6 77 2.5 2.5 2.5 1.7 96 chr3L 10940075 intergenic not near genes chr3L 10940123 intergenic not near genes chr3L 10940171 intergenic not near genes chr3L_6_10940001 chr3L_10940001 RAL-712 904 chr3L 11052920 11052933 chr3L 11053014 11053026 6 94 2.0 5.5 3.8 1.2 106 chr3L 11052920 intergenic not near genes chr3L 11052973 intergenic not near genes chr3L 11053026 intergenic not near genes chr3L_6_11050001 chr3L_11050001 RAL-712 905 chr3L 11105298 11105326 chr3L 11107009 11107037 X-element 4 1711 3.0 3.0 3.0 1.0 1739 chr3L 11105298 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107037 exon CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-712 906 chr3L 11121587 11121621 chr3L 11122994 11123029 13 1408 30.0 30.5 30.2 0.4 1442 chr3L 11121587 exon mRpL2 + chr3L 11122308 exon Ufd1-like - chr3L 11123029 exon Ufd1-like - chr3L_13_11120001 chr3L_11120001 RAL-712 907 chr3L 11135786 11135806 chr3L 11135871 11135885 7 84 0.5 3.5 2.0 2.3 99 chr3L 11135786 intergenic CG32082 +,CG14143 + chr3L 11135836 intergenic CG32082 +,CG14143 + chr3L 11135885 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-712 908 chr3L 11264465 11264496 chr3L 11271417 11271448 17.6 5 6952 1.5 1.5 1.5 2.0 6983 chr3L 11264465 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271448 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-712 909 chr3L 11297618 11297652 chr3L 11297694 11297728 7 75 0.5 1.5 1.0 3.5 110 chr3L 11297618 intergenic not near genes chr3L 11297673 intergenic not near genes chr3L 11297728 intergenic not near genes chr3L_7_11295001 chr3L_11295001 RAL-712 910 chr3L 11305796 11305819 chr3L 22908066 22908067 7 11602263 5.5 13.5 9.5 0.7 11602271 chr3L 11305796 intergenic not near genes chr3L 17106932 intron Rbp6 - chr3L 22908067 intergenic not near genes chr3L_7_17105001 chr3L_17105001 RAL-712 911 chr3L 11329687 11329727 chr3L 11332892 11332932 jockey 4 3205 2.0 1.0 1.5 1.6 3245 chr3L 11329687 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332932 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-712 912 chr3L 11353139 11353167 chr3L 11353222 11353250 9 83 1.5 2.5 2.0 3.0 111 chr3L 11353139 intergenic not near genes chr3L 11353194 intergenic not near genes chr3L 11353250 intergenic not near genes chr3L_9_11350001 chr3L_11350001 RAL-712 913 chr3L 11432905 11432929 chr3L 11432984 11433008 4 79 3.0 0.0 1.5 1.6 103 chr3L 11432905 intergenic not near genes chr3L 11432956 intergenic not near genes chr3L 11433008 intergenic not near genes chr3L_4_11430001 chr3L_11430001 RAL-712 914 chr3L 11442794 11442797 chr3L 11442879 11442882 4 85 0.5 0.0 0.2 3.3 88 chr3L 11442794 intergenic not near genes chr3L 11442838 intergenic not near genes chr3L 11442882 intergenic not near genes chr3L_4_11440001 chr3L_11440001 RAL-712 915 chr3L 11564794 11564811 chr3L 11572416 11572436 412 6 7623 3.5 3.5 3.5 1.3 7642 chr3L 11564794 exon CG33267 + chr3L 11568615 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-712 916 chr3L 11579560 11579583 chr3L 11579663 11579689 6 106 1.0 2.0 1.5 2.4 129 chr3L 11579560 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-712 917 chr3L 11678102 11678121 chr3L 11678189 11678208 5 87 1.0 4.0 2.5 1.4 106 chr3L 11678102 intron CG32085 - chr3L 11678155 intron CG32085 - chr3L 11678208 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-712 918 chr3L 11723091 11723114 chr3L 11727886 11727909 Doc 7 4795 2.5 3.5 3.0 1.8 4818 chr3L 11723091 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-712 919 chr3L 11729681 11729703 chr3L 11729757 11729779 8 76 1.0 4.0 2.5 2.3 98 chr3L 11729681 exon CG32088 + chr3L 11729730 intron CG32088 + chr3L 11729779 exon CG32088 + chr3L_8_11725001 chr3L_11725001 RAL-712 920 chr3L 11744011 11744041 chr3L 11744119 11744149 11 108 5.5 0.0 2.8 2.9 138 chr3L 11744011 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-712 921 chr3L 802565 802566 chr3L 11777678 11777678 13 10975112 12.0 3.0 7.5 1.5 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_13_6290001 chr3L_6290001 RAL-712 922 chr3L 11816795 11816814 chr3L 11816896 11816915 7 101 6.0 2.5 4.2 1.3 120 chr3L 11816795 3` UTR CG5946 - chr3L 11816855 3` UTR CG5946 - chr3L 11816915 3` UTR CG5946 - chr3L_7_11815001 chr3L_11815001 RAL-712 923 chr3L 11818994 11819143 chr3L 11819073 11819224 10 80 1.5 2.0 1.8 3.6 230 chr3L 11818994 intron CG5946 - chr3L 11819109 intron CG5946 - chr3L 11819224 intron CG5946 - chr3L_10_11815001 chr3L_11815001 RAL-712 924 chr3L 11840201 11840222 chr3L 11840431 11840452 5 230 4.5 2.0 3.2 1.2 251 chr3L 11840201 intergenic not near genes chr3L 11840326 intergenic not near genes chr3L 11840452 intergenic not near genes chr3L_5_11840001 chr3L_11840001 RAL-712 925 chr3L 11849332 11849355 chr3L 11849432 11849455 8 100 1.5 2.0 1.8 2.9 123 chr3L 11849332 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849455 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-712 926 chr3L 11864554 11864585 chr3L 11865849 11865879 pogo 10 1295 3.5 5.0 4.2 1.9 1325 chr3L 11864554 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865879 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-712 927 chr3L 11916905 11916936 chr3L 11916994 11917025 9 88 1.5 3.0 2.2 2.8 120 chr3L 11916905 intron CG44837 - chr3L 11916965 intron CG44837 - chr3L 11917025 intron CG44837 - chr3L_9_11915001 chr3L_11915001 RAL-712 928 chr3L 11984568 11984588 chr3L 11984659 11984679 5 91 6.0 0.0 3.0 1.2 111 chr3L 11984568 intergenic CG6938 + chr3L 11984624 intergenic CG6938 + chr3L 11984679 intergenic CG6938 + chr3L_5_11980001 chr3L_11980001 RAL-712 929 chr3L 12089081 12089110 chr3L 12089161 12089190 10 80 1.5 1.0 1.2 4.5 109 chr3L 12089081 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089190 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-712 930 chr3L 12092400 12092419 chr3L 12092477 12092496 4 77 0.0 3.0 1.5 1.6 96 chr3L 12092400 intergenic not near genes chr3L 12092448 intergenic not near genes chr3L 12092496 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-712 931 chr3L 12092529 12092550 chr3L 12093940 12093963 6 1412 10.0 14.0 12.0 0.5 1434 chr3L 12092529 intergenic not near genes chr3L 12093246 intergenic not near genes chr3L 12093963 intergenic not near genes chr3L_6_12090001 chr3L_12090001 RAL-712 932 chr3L 12231377 12231402 chr3L 12231677 12231702 10 300 11.5 17.5 14.5 0.6 325 chr3L 12231377 intron app - chr3L 12231540 intron app - chr3L 12231702 intron app - chr3L_10_12230001 chr3L_12230001 RAL-712 933 chr3L 12255201 12255223 chr3L 12255286 12255307 8 85 3.0 2.0 2.5 2.3 106 chr3L 12255201 intron app - chr3L 12255254 intron app - chr3L 12255307 intron app - chr3L_8_12255001 chr3L_12255001 RAL-712 934 chr3L 12304092 12304114 chr3L 12304168 12304190 7 76 3.5 2.0 2.8 1.8 98 chr3L 12304092 intergenic not near genes chr3L 12304141 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-712 935 chr3L 12353923 12353952 chr3L 12354012 12354041 7 89 1.0 4.5 2.8 1.8 118 chr3L 12353923 intergenic not near genes chr3L 12353982 intergenic not near genes chr3L 12354041 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-712 936 chr3L 12378574 12378606 chr3L 12378743 12378775 5 169 3.0 3.5 3.2 1.2 201 chr3L 12378574 intron Ncc69 - chr3L 12378674 intron Ncc69 - chr3L 12378775 intron Ncc69 - chr3L_5_12375001 chr3L_12375001 RAL-712 937 chr3L 12488420 12488443 chr3L 12488547 12488570 4 127 1.0 1.5 1.2 1.8 150 chr3L 12488420 intron CG10660 - chr3L 12488495 intron CG10660 - chr3L 12488570 exon CG10660 - chr3L_4_12485001 chr3L_12485001 RAL-712 938 chr3L 12493884 12493916 chr3L 12493977 12494009 11 93 2.0 1.0 1.5 4.4 125 chr3L 12493884 intron CG10657 - chr3L 12493946 intron CG10657 - chr3L 12494009 intron CG10657 - chr3L_11_12490001 chr3L_12490001 RAL-712 939 chr3L 11777676 11777678 chr3L 12638619 12638625 14 860944 5.0 15.0 10.0 1.3 860949 chr3L 11777676 intron,intron Pi3K68D -,CG14131 + chr3L 12208150 intron app - chr3L 12638625 intron CR32111 + chr3L_14_12205001 chr3L_12205001 RAL-712 940 chr3L 12681689 12681715 chr3L 12682042 12682068 5 353 2.5 1.0 1.8 1.8 379 chr3L 12681689 intergenic not near genes chr3L 12681878 intergenic not near genes chr3L 12682068 intergenic not near genes chr3L_5_12680001 chr3L_12680001 RAL-712 941 chr3L 12808663 12808677 chr3L 12808745 12808759 6 82 2.0 2.0 2.0 2.0 96 chr3L 12808663 intron Sap130 + chr3L 12808711 intron Sap130 + chr3L 12808759 intron,5` UTR Sap130 +,CG32110 + chr3L_6_12805001 chr3L_12805001 RAL-712 942 chr3L 12874936 12874963 chr3L 12877228 12877255 jockey 10 2292 2.5 4.0 3.2 2.4 2319 chr3L 12874936 intergenic not near genes chr3L 12876096 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-712 943 chr3L 12894805 12894815 chr3L 12894883 12894893 5 78 4.5 8.5 6.5 0.7 88 chr3L 12894805 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894893 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-712 944 chr3L 12919278 12919291 chr3L 12924762 12924773 Rt1c 4 5483 4.0 0.5 2.2 1.2 5495 chr3L 12919278 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924773 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-712 945 chr3L 12955132 12955163 chr3L 12955208 12955238 6 76 1.0 1.5 1.2 2.7 106 chr3L 12955132 intergenic CG10752 - chr3L 12955185 intergenic not near genes chr3L 12955238 intergenic not near genes chr3L_6_12955001 chr3L_12955001 RAL-712 946 chr3L 12957788 12957819 chr3L 12962270 12962301 copia 8 4482 4.5 3.5 4.0 1.6 4513 chr3L 12957788 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_8_12960001 chr3L_12960001 RAL-712 947 chr3L 12978758 12978777 chr3L 12978837 12978856 6 78 0.0 0.0 0.0 6.0 98 chr3L 12978758 intergenic not near genes chr3L 12978807 intergenic not near genes chr3L 12978856 intergenic not near genes chr3L_6_12975001 chr3L_12975001 RAL-712 948 chr3L 13009862 13009862 chr3L 22908066 22908067 7 9898204 9.5 13.5 11.5 0.6 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_7_17955001 chr3L_17955001 RAL-712 949 chr3L 13069575 13069587 chr3L 13069654 13069666 4 78 3.0 3.0 3.0 1.0 91 chr3L 13069575 intergenic not near genes chr3L 13069620 intergenic not near genes chr3L 13069666 intergenic not near genes chr3L_4_13065001 chr3L_13065001 RAL-712 950 chr3L 13196000 13196015 chr3L 13196147 13196162 5 146 3.5 4.0 3.8 1.0 162 chr3L 13196000 intergenic not near genes chr3L 13196081 intergenic not near genes chr3L 13196162 intergenic not near genes chr3L_5_13195001 chr3L_13195001 RAL-712 951 chr3L 13311019 13311049 chr3L 13311100 13311130 7 81 0.5 1.0 0.8 3.9 111 chr3L 13311019 intergenic not near genes chr3L 13311074 intergenic not near genes chr3L 13311130 intergenic not near genes chr3L_7_13310001 chr3L_13310001 RAL-712 952 chr3L 13361967 13361988 chr3L 13362061 13362082 7 94 3.5 1.5 2.5 2.0 115 chr3L 13361967 intergenic not near genes chr3L 13362024 intergenic not near genes chr3L 13362082 intergenic not near genes chr3L_7_13360001 chr3L_13360001 RAL-712 953 chr3L 13374250 13374277 chr3L 13374339 13374366 6 89 3.0 2.0 2.5 1.7 116 chr3L 13374250 intergenic not near genes chr3L 13374308 intergenic not near genes chr3L 13374366 intergenic not near genes chr3L_6_13370001 chr3L_13370001 RAL-712 954 chr3L 13452672 13452683 chr3L 13452760 13452770 6 88 1.5 2.0 1.8 2.1 98 chr3L 13452672 intron CG10738 + chr3L 13452721 intron CG10738 + chr3L 13452770 intron CG10738 + chr3L_6_13450001 chr3L_13450001 RAL-712 955 chr3L 13455750 13455780 chr3L 13455905 13455935 7 155 0.0 4.0 2.0 2.3 185 chr3L 13455750 intron CG10738 + chr3L 13455842 intron CG10738 + chr3L 13455935 intron CG10738 + chr3L_7_13455001 chr3L_13455001 RAL-712 956 chr3L 13525158 13525189 chr3L 13532954 13532985 roo 13 7796 3.5 5.5 4.5 2.4 7827 chr3L 13525158 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_13_13525001 chr3L_13525001 RAL-712 957 chr3L 13535901 13535937 chr3L 13535977 13536013 7 76 0.5 3.5 2.0 2.3 112 chr3L 13535901 intergenic not near genes chr3L 13535957 intergenic not near genes chr3L 13536013 intergenic not near genes chr3L_7_13535001 chr3L_13535001 RAL-712 958 chr3L 13559963 13559998 chr3L 13560048 13560084 10 86 2.5 3.0 2.8 2.6 121 chr3L 13559963 intron bru-3 - chr3L 13560024 intron bru-3 - chr3L 13560084 intron bru-3 - chr3L_10_13560001 chr3L_13560001 RAL-712 959 chr3L 13610204 13610225 chr3L 13610301 13610322 6 97 1.5 0.5 1.0 3.0 118 chr3L 13610204 intron bru-3 - chr3L 13610263 intron bru-3 - chr3L 13610322 intron bru-3 - chr3L_6_13610001 chr3L_13610001 RAL-712 960 chr3L 13769011 13769029 chr3L 13769097 13769115 6 86 0.0 1.5 0.8 3.3 104 chr3L 13769011 intron bru-3 - chr3L 13769063 intron bru-3 - chr3L 13769115 intron bru-3 - chr3L_6_13765001 chr3L_13765001 RAL-712 961 chr3L 13804548 13804571 chr3L 13822834 13822857 roo 6 18286 2.5 3.5 3.0 1.5 18309 chr3L 13804548 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822857 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-712 962 chr3L 13823872 13823889 chr3L 13824041 13824058 6 169 2.5 3.5 3.0 1.5 186 chr3L 13823872 intergenic not near genes chr3L 13823965 intergenic not near genes chr3L 13824058 intergenic not near genes chr3L_6_13820001 chr3L_13820001 RAL-712 963 chr3L 13828697 13828721 chr3L 13828772 13828797 8 76 0.5 3.0 1.8 2.9 100 chr3L 13828697 intergenic not near genes chr3L 13828747 intergenic not near genes chr3L 13828797 intergenic not near genes chr3L_8_13825001 chr3L_13825001 RAL-712 964 chr3L 14092745 14092756 chr3L 14092828 14092839 5 83 1.5 0.0 0.8 2.8 94 chr3L 14092745 intergenic not near genes chr3L 14092792 intergenic not near genes chr3L 14092839 intergenic not near genes chr3L_5_14090001 chr3L_14090001 RAL-712 965 chr3L 14196424 14196444 chr3L 14196509 14196529 6 85 3.0 3.0 3.0 1.5 105 chr3L 14196424 intron nuf + chr3L 14196476 intron nuf + chr3L 14196529 intron nuf + chr3L_6_14195001 chr3L_14195001 RAL-712 966 chr3L 14245572 14245592 chr3L 14245665 14245686 1360 9 94 3.5 3.0 3.2 2.1 114 chr3L 14245572 3` UTR CR44561 - chr3L 14245629 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-712 967 chr3L 14295996 14296013 chr3L 14296482 14296499 roo 6 486 5.5 6.5 6.0 0.9 503 chr3L 14295996 intron fz + chr3L 14296248 intron fz + chr3L 14296499 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-712 968 chr3L 14312023 14312052 chr3L 14316835 14316865 X-element 6 4813 2.0 3.5 2.8 1.6 4842 chr3L 14312023 exon fz + chr3L 14314444 intron fz + chr3L 14316865 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-712 969 chr3L 14356519 14356549 chr3L 14356599 14356629 10 80 1.0 1.0 1.0 5.0 110 chr3L 14356519 intron fz + chr3L 14356574 intron fz + chr3L 14356629 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-712 970 chr3L 14399179 14399191 chr3L 14399268 14399280 4 89 4.5 0.0 2.2 1.2 101 chr3L 14399179 intergenic not near genes chr3L 14399230 intergenic not near genes chr3L 14399280 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-712 971 chr3L 14437884 14437914 chr3L 14437978 14438007 6 94 2.0 2.5 2.2 1.9 123 chr3L 14437884 intron bbg - chr3L 14437946 intron bbg - chr3L 14438007 intron bbg - chr3L_6_14435001 chr3L_14435001 RAL-712 972 chr3L 14462884 14462889 chr3L 14462972 14462977 4 88 0.0 1.5 0.8 2.2 93 chr3L 14462884 intron bbg - chr3L 14462930 intron bbg - chr3L 14462977 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-712 973 chr3L 14468453 14468467 chr3L 14473659 14473673 copia 5 5206 2.5 3.5 3.0 1.2 5220 chr3L 14468453 intron bbg - chr3L 14471063 intron bbg - chr3L 14473673 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-712 974 chr3L 14514693 14514694 chr3L 22908066 22908067 Stalker2 7 8393373 11.0 13.5 12.2 0.5 8393374 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_7_18710001 chr3L_18710001 RAL-712 975 chr3L 14531227 14531238 chr3L 14531340 14531351 4 113 2.0 1.0 1.5 1.6 124 chr3L 14531227 intron bbg - chr3L 14531289 intron bbg - chr3L 14531351 intron bbg - chr3L_4_14530001 chr3L_14530001 RAL-712 976 chr3L 14543712 14543736 chr3L 14543798 14543822 5 85 3.0 0.0 1.5 2.0 110 chr3L 14543712 intron CG9238 - chr3L 14543767 intron CG9238 - chr3L 14543822 intron CG9238 - chr3L_5_14540001 chr3L_14540001 RAL-712 977 chr3L 14596126 14596141 chr3L 14596206 14596221 4 80 0.0 0.0 0.0 4.0 95 chr3L 14596126 intron HGTX - chr3L 14596174 intron HGTX - chr3L 14596221 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-712 978 chr3L 14600922 14600956 chr3L 14601005 14601039 8 83 4.0 0.5 2.2 2.5 117 chr3L 14600922 intergenic not near genes chr3L 14600980 intergenic not near genes chr3L 14601039 intergenic not near genes chr3L_8_14600001 chr3L_14600001 RAL-712 979 chr3L 14638338 14638362 chr3L 14638431 14638457 7 94 2.0 3.0 2.5 2.0 119 chr3L 14638338 intron dlp + chr3L 14638398 intron dlp + chr3L 14638457 intron dlp + chr3L_7_14635001 chr3L_14635001 RAL-712 980 chr3L 14684624 14684634 chr3L 14684716 14684726 5 91 4.0 1.0 2.5 1.4 102 chr3L 14684624 intron ome + chr3L 14684675 intron ome + chr3L 14684726 intron ome + chr3L_5_14680001 chr3L_14680001 RAL-712 981 chr3L 14721188 14721206 chr3L 14723031 14723049 Rt1c 4 1843 3.0 1.5 2.2 1.2 1861 chr3L 14721188 intron ome + chr3L 14722118 intron ome + chr3L 14723049 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-712 982 chr3L 14730031 14730057 chr3L 14730113 14730140 6 83 1.0 1.5 1.2 2.7 109 chr3L 14730031 intron ome + chr3L 14730086 intron ome + chr3L 14730140 intron ome + chr3L_6_14730001 chr3L_14730001 RAL-712 983 chr3L 14865369 14865382 chr3L 14865465 14865478 5 96 0.0 1.0 0.5 3.3 109 chr3L 14865369 exon CG17839 + chr3L 14865424 intron CG17839 + chr3L 14865478 intron CG17839 + chr3L_5_14865001 chr3L_14865001 RAL-712 984 chr3L 14876107 14876132 chr3L 14876341 14876366 6 234 0.0 2.0 1.0 3.0 259 chr3L 14876107 intron CG17839 + chr3L 14876236 intron CG17839 + chr3L 14876366 intron CG17839 + chr3L_6_14875001 chr3L_14875001 RAL-712 985 chr3L 14922100 14922128 chr3L 14922208 14922235 6 107 1.5 0.5 1.0 3.0 135 chr3L 14922100 intron DCX-EMAP + chr3L 14922168 intron DCX-EMAP + chr3L 14922235 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-712 986 chr3L 15054588 15054616 chr3L 15054664 15054692 14 75 2.5 5.0 3.8 2.9 104 chr3L 15054588 intron Sytbeta - chr3L 15054640 intron Sytbeta - chr3L 15054692 intron Sytbeta - chr3L_14_15050001 chr3L_15050001 RAL-712 987 chr3L 15085059 15085084 chr3L 15086225 15086250 1360 7 1166 1.0 2.0 1.5 2.8 1191 chr3L 15085059 intron cp309 - chr3L 15085654 intron cp309 - chr3L 15086250 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-712 988 chr3L 15233563 15233579 chr3L 15233644 15233659 5 81 1.0 2.5 1.8 1.8 96 chr3L 15233563 intergenic not near genes chr3L 15233611 intergenic not near genes chr3L 15233659 intergenic not near genes chr3L_5_15230001 chr3L_15230001 RAL-712 989 chr3L 15261724 15261726 chr3L 22908066 22908066 5 7646342 4.5 13.5 9.0 0.5 7646342 chr3L 15261724 intergenic not near genes chr3L 19084895 intron Mkp3 - chr3L 22908066 intergenic not near genes chr3L_5_19080001 chr3L_19080001 RAL-712 990 chr3L 15295768 15295789 chr3L 15298611 15298632 gypsy5 6 2843 4.0 2.0 3.0 1.5 2864 chr3L 15295768 intergenic not near genes chr3L 15297200 intergenic not near genes chr3L 15298632 intergenic Best4 + chr3L_6_15295001 chr3L_15295001 RAL-712 991 chr3L 15362427 15362455 chr3L 15362660 15362688 6 231 2.5 0.0 1.2 2.7 261 chr3L 15362427 intergenic not near genes chr3L 15362558 intergenic not near genes chr3L 15362688 intergenic not near genes chr3L_6_15360001 chr3L_15360001 RAL-712 992 chr3L 15406028 15406054 chr3L 15406111 15406137 5 83 3.0 2.0 2.5 1.4 109 chr3L 15406028 intergenic not near genes chr3L 15406082 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-712 993 chr3L 15423761 15423781 chr3L 15426605 15426625 opus 4 2844 1.5 1.5 1.5 1.6 2864 chr3L 15423761 intergenic not near genes chr3L 15425193 intergenic not near genes chr3L 15426625 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-712 994 chr3L 15443590 15443595 chr3L 15443666 15443671 4 76 5.0 2.5 3.8 0.8 81 chr3L 15443590 intergenic not near genes chr3L 15443630 intergenic not near genes chr3L 15443671 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-712 995 chr3L 15453890 15453921 chr3L 15453974 15454004 6 84 1.0 0.5 0.8 3.3 114 chr3L 15453890 intergenic not near genes chr3L 15453947 intergenic not near genes chr3L 15454004 intergenic not near genes chr3L_6_15450001 chr3L_15450001 RAL-712 996 chr3L 15541616 15541636 chr3L 15541707 15541727 5 91 4.0 1.0 2.5 1.4 111 chr3L 15541616 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541727 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-712 997 chr3L 15609247 15609274 chr3L 15609329 15609356 8 82 3.5 5.5 4.5 1.5 109 chr3L 15609247 3` UTR CG7650 - chr3L 15609302 3` UTR CG7650 - chr3L 15609356 3` UTR CG7650 - chr3L_8_15605001 chr3L_15605001 RAL-712 998 chr3L 15880601 15880625 chr3L 15880681 15880705 6 80 4.0 5.0 4.5 1.1 104 chr3L 15880601 intron pHCl - chr3L 15880653 intron pHCl - chr3L 15880705 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-712 999 chr3L 15883191 15883222 chr3L 15883484 15883513 8 293 1.5 2.0 1.8 2.9 322 chr3L 15883191 intron pHCl - chr3L 15883352 intron pHCl - chr3L 15883513 intron pHCl - chr3L_8_15880001 chr3L_15880001 RAL-712 1000 chr3L 15899224 15899261 chr3L 15899791 15899828 jockey 10 567 1.0 2.0 1.5 4.0 604 chr3L 15899224 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899828 intergenic sff - chr3L_10_15895001 chr3L_15895001 RAL-712 1001 chr3L 15908226 15908253 chr3L 15908339 15908366 7 113 3.0 2.0 2.5 2.0 140 chr3L 15908226 intron sff - chr3L 15908296 intron sff - chr3L 15908366 intron sff - chr3L_7_15905001 chr3L_15905001 RAL-712 1002 chr3L 15976485 15976500 chr3L 15976568 15976583 7 83 1.5 0.0 0.8 3.9 98 chr3L 15976485 intron brm - chr3L 15976534 intron brm - chr3L 15976583 intron brm - chr3L_7_15975001 chr3L_15975001 RAL-712 1003 chr3L 16158804 16158835 chr3L 16158889 16158920 5 85 2.5 0.5 1.5 2.0 116 chr3L 16158804 intron CG5151 - chr3L 16158862 intron CG5151 - chr3L 16158920 intron CG5151 - chr3L_5_16155001 chr3L_16155001 RAL-712 1004 chr3L 16184102 16184137 chr3L 16188921 16188956 X-element 8 4819 1.0 2.0 1.5 3.2 4854 chr3L 16184102 intergenic not near genes chr3L 16186529 intergenic not near genes chr3L 16188956 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-712 1005 chr3L 16212811 16212830 chr3L 16212902 16212921 9 91 2.5 1.0 1.8 3.2 110 chr3L 16212811 intergenic CG13073 - chr3L 16212866 intergenic CG13073 - chr3L 16212921 intergenic CG13073 - chr3L_9_16210001 chr3L_16210001 RAL-712 1006 chr3L 16258388 16258414 chr3L 16258474 16258500 7 85 4.0 0.0 2.0 2.3 112 chr3L 16258388 intergenic not near genes chr3L 16258444 intergenic not near genes chr3L 16258500 intergenic not near genes chr3L_7_16255001 chr3L_16255001 RAL-712 1007 chr3L 16312761 16312786 chr3L 16312840 16312864 5 79 0.0 1.0 0.5 3.3 103 chr3L 16312761 intergenic not near genes chr3L 16312812 intergenic not near genes chr3L 16312864 intergenic not near genes chr3L_5_16310001 chr3L_16310001 RAL-712 1008 chr3L 16364356 16364380 chr3L 16364446 16364470 9 90 1.5 3.0 2.2 2.8 114 chr3L 16364356 intergenic not near genes chr3L 16364413 intergenic Cpr72Eb + chr3L 16364470 intergenic Cpr72Eb + chr3L_9_16360001 chr3L_16360001 RAL-712 1009 chr3L 16406031 16406037 chr3L 22908066 22908066 5 6502032 11.5 13.5 12.5 0.4 6502035 chr3L 16406031 intron fax - chr3L 19657048 intron tey - chr3L 22908066 intergenic not near genes chr3L_5_19655001 chr3L_19655001 RAL-712 1010 chr3L 16443849 16443872 chr3L 16446188 16446212 Doc 11 2340 5.0 2.0 3.5 2.4 2363 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446212 intron,intron CG33158 +,dsx-c73A - chr3L_11_16445001 chr3L_16445001 RAL-712 1011 chr3L 16493989 16494012 chr3L 16494506 16494529 jockey 9 517 1.5 3.0 2.2 2.8 540 chr3L 16493989 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494259 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-712 1012 chr3L 16533574 16533585 chr3L 16533685 16533695 4 110 0.5 2.0 1.2 1.8 121 chr3L 16533574 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533695 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-712 1013 chr3L 16540056 16540082 chr3L 16540144 16540170 7 88 3.5 1.5 2.5 2.0 114 chr3L 16540056 intron CG43373 - chr3L 16540113 intron CG43373 - chr3L 16540170 intron CG43373 - chr3L_7_16540001 chr3L_16540001 RAL-712 1014 chr3L 16681863 16681876 chr3L 16681954 16681967 5 91 5.0 2.0 3.5 1.1 104 chr3L 16681863 intron,intron Lasp -,CG43954 - chr3L 16681915 intron,intron Lasp -,CG43954 - chr3L 16681967 intron,intron Lasp -,CG43954 - chr3L_5_16680001 chr3L_16680001 RAL-712 1015 chr3L 16772492 16772510 chr3L 16772582 16772600 6 90 6.5 1.5 4.0 1.2 108 chr3L 16772492 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772600 intron Nrt + chr3L_6_16770001 chr3L_16770001 RAL-712 1016 chr3L 16786981 16787002 chr3L 16787056 16787078 4 76 0.0 4.0 2.0 1.3 97 chr3L 16786981 intergenic Int6 - chr3L 16787030 intergenic Int6 - chr3L 16787078 intergenic Int6 -,CG9674 - chr3L_4_16785001 chr3L_16785001 RAL-712 1017 chr3L 16817881 16817902 chr3L 16818017 16818042 8 139 3.5 4.0 3.8 1.7 161 chr3L 16817881 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818042 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-712 1018 chr3L 16818747 16818780 chr3L 16818823 16818856 10 76 0.5 4.0 2.2 3.1 109 chr3L 16818747 intron,intron nudC +,CG13024 - chr3L 16818802 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_10_16815001 chr3L_16815001 RAL-712 1019 chr3L 16869589 16869607 chr3L 16869672 16869690 5 83 0.5 1.5 1.0 2.5 101 chr3L 16869589 intron Lmpt + chr3L 16869640 intron Lmpt + chr3L 16869690 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-712 1020 chr3L 16870880 16870893 chr3L 16870971 16870984 5 91 0.0 2.0 1.0 2.5 104 chr3L 16870880 intron Lmpt + chr3L 16870932 intron Lmpt + chr3L 16870984 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-712 1021 chr3L 16913677 16913700 chr3L 16913757 16913780 9 80 2.0 3.0 2.5 2.6 103 chr3L 16913677 intron Lmpt + chr3L 16913728 intron Lmpt + chr3L 16913780 intron Lmpt + chr3L_9_16910001 chr3L_16910001 RAL-712 1022 chr3L 16945726 16945761 chr3L 16954879 16954914 roo 12 9152 3.5 0.0 1.8 4.3 9188 chr3L 16945726 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_12_16950001 chr3L_16950001 RAL-712 1023 chr3L 17026790 17026822 chr3L 17026870 17026903 10 81 0.5 3.5 2.0 3.3 113 chr3L 17026790 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026903 3` UTR Fit2 + chr3L_10_17025001 chr3L_17025001 RAL-712 1024 chr3L 17034936 17034967 chr3L 17035124 17035155 G2 6 188 1.0 1.0 1.0 3.0 219 chr3L 17034936 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035155 intergenic not near genes chr3L_6_17035001 chr3L_17035001 RAL-712 1025 chr3L 17085003 17085031 chr3L 17094151 17094180 roo 9 9149 4.5 2.5 3.5 2.0 9177 chr3L 17085003 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094180 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-712 1026 chr3L 17104996 17105016 chr3L 17105073 17105093 6 77 3.0 2.0 2.5 1.7 97 chr3L 17104996 intron Rbp6 - chr3L 17105044 intron Rbp6 - chr3L 17105093 intron Rbp6 - chr3L_6_17105001 chr3L_17105001 RAL-712 1027 chr3L 17139492 17139508 chr3L 17139631 17139647 7 139 2.0 3.5 2.8 1.8 155 chr3L 17139492 intron Rbp6 - chr3L 17139570 intron Rbp6 - chr3L 17139647 intron Rbp6 - chr3L_7_17135001 chr3L_17135001 RAL-712 1028 chr3L 17220811 17220829 chr3L 17220911 17220929 4 99 1.0 1.5 1.2 1.8 118 chr3L 17220811 intron Rbp6 - chr3L 17220870 intron Rbp6 - chr3L 17220929 intron Rbp6 - chr3L_4_17220001 chr3L_17220001 RAL-712 1029 chr3L 17272246 17272260 chr3L 17272379 17272393 4 133 3.5 3.0 3.2 1.0 147 chr3L 17272246 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272393 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-712 1030 chr3L 17510747 17510765 chr3L 17510831 17510849 6 84 1.5 4.5 3.0 1.5 102 chr3L 17510747 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-712 1031 chr3L 17516984 17517010 chr3L 17524542 17524563 412 13 7557 2.0 2.0 2.0 4.3 7579 chr3L 17516984 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524563 3` UTR CG7564 + chr3L_13_17520001 chr3L_17520001 RAL-712 1032 chr3L 17612214 17612243 chr3L 17612299 17612327 14 84 2.0 3.5 2.8 3.7 113 chr3L 17612214 intron Eip74EF - chr3L 17612270 intron Eip74EF - chr3L 17612327 intron Eip74EF - chr3L_14_17610001 chr3L_17610001 RAL-712 1033 chr3L 17730859 17730881 chr3L 17738189 17738210 mdg1 8 7330 2.5 2.0 2.2 2.5 7351 chr3L 17730859 intron Ccn + chr3L 17734534 intron Ccn + chr3L 17738210 intron Ccn + chr3L_8_17730001 chr3L_17730001 RAL-712 1034 chr3L 17837624 17837652 chr3L 17837712 17837740 11 88 4.0 6.5 5.2 1.8 116 chr3L 17837624 exon Grd + chr3L 17837682 intron Grd + chr3L 17837740 intron Grd + chr3L_11_17835001 chr3L_17835001 RAL-712 1035 chr3L 18029963 18029978 chr3L 18030039 18030055 4 77 1.5 0.0 0.8 2.2 92 chr3L 18029963 intron Eip75B - chr3L 18030009 intron Eip75B - chr3L 18030055 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-712 1036 chr3L 18118215 18118238 chr3L 18118291 18118316 5 78 2.5 1.5 2.0 1.7 101 chr3L 18118215 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118316 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-712 1037 chr3L 18133023 18133039 chr3L 18133113 18133128 4 90 1.0 0.0 0.5 2.7 105 chr3L 18133023 intergenic Cyp312a1 - chr3L 18133076 intergenic Cyp312a1 - chr3L 18133128 intergenic Cyp312a1 - chr3L_4_18130001 chr3L_18130001 RAL-712 1038 chr3L 18221097 18221107 chr3L 18221178 18221188 4 80 0.0 0.0 0.0 4.0 91 chr3L 18221097 intergenic not near genes chr3L 18221142 intergenic not near genes chr3L 18221188 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-712 1039 chr3L 18267846 18267870 chr3L 18267923 18267947 5 77 0.5 1.5 1.0 2.5 101 chr3L 18267846 intergenic not near genes chr3L 18267896 intergenic not near genes chr3L 18267947 intergenic not near genes chr3L_5_18265001 chr3L_18265001 RAL-712 1040 chr3L 18361974 18362002 chr3L 18362617 18362645 6 643 13.5 10.0 11.8 0.5 671 chr3L 18361974 intergenic not near genes chr3L 18362310 intergenic not near genes chr3L 18362645 intergenic not near genes chr3L_6_18360001 chr3L_18360001 RAL-712 1041 chr3L 18445250 18445279 chr3L 18445328 18445357 5 78 2.0 1.5 1.8 1.8 107 chr3L 18445250 intergenic not near genes chr3L 18445304 intergenic not near genes chr3L 18445357 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-712 1042 chr3L 18456282 18456298 chr3L 18456370 18456386 5 88 0.5 1.5 1.0 2.5 104 chr3L 18456282 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456386 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-712 1043 chr3L 18506136 18506151 chr3L 18509599 18509613 F-element 5 3463 1.5 1.5 1.5 2.0 3477 chr3L 18506136 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509613 intergenic not near genes chr3L_5_18505001 chr3L_18505001 RAL-712 1044 chr3L 18528625 18528655 chr3L 18537786 18537816 roo 5 9161 1.0 1.5 1.2 2.3 9191 chr3L 18528625 intergenic not near genes chr3L 18533220 intergenic not near genes chr3L 18537816 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-712 1045 chr3L 18656182 18656220 chr3L 18656267 18656296 9 83 1.0 2.0 1.5 3.6 114 chr3L 18656182 intron MYPT-75D + chr3L 18656239 intron MYPT-75D + chr3L 18656296 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 RAL-712 1046 chr3L 18721785 18721802 chr3L 18721876 18721893 8 91 1.0 1.5 1.2 3.6 108 chr3L 18721785 intergenic CG12477 - chr3L 18721839 intergenic CG12477 - chr3L 18721893 3` UTR CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-712 1047 chr3L 18753549 18753566 chr3L 18753630 18753648 5 82 0.5 0.5 0.5 3.3 99 chr3L 18753549 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753648 intron ftz-f1 - chr3L_5_18750001 chr3L_18750001 RAL-712 1048 chr3L 18772406 18772433 chr3L 18781087 18781114 roo 7 8681 2.5 2.0 2.2 2.2 8708 chr3L 18772406 intron ftz-f1 - chr3L 18776760 intron ftz-f1 - chr3L 18781114 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-712 1049 chr3L 18833783 18833808 chr3L 18834945 18834972 1360 6 1164 2.0 1.5 1.8 2.1 1189 chr3L 18833783 intron Indy - chr3L 18834378 intron Indy - chr3L 18834972 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-712 1050 chr3L 18838543 18838555 chr3L 18838623 18838635 4 80 0.5 2.5 1.5 1.6 92 chr3L 18838543 intron Indy - chr3L 18838589 intron Indy - chr3L 18838635 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-712 1051 chr3L 18839742 18839765 chr3L 18839825 18839848 5 82 2.0 2.5 2.2 1.6 106 chr3L 18839742 intron Indy - chr3L 18839795 intron Indy - chr3L 18839848 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-712 1052 chr3L 18928313 18928336 chr3L 18928400 18928421 6 86 3.0 1.5 2.2 1.9 108 chr3L 18928313 intron CG32204 - chr3L 18928367 intron CG32204 - chr3L 18928421 intron CG32204 - chr3L_6_18925001 chr3L_18925001 RAL-712 1053 chr3L 18932280 18932307 chr3L 18932386 18932413 7 106 1.5 3.0 2.2 2.2 133 chr3L 18932280 intron CG32204 - chr3L 18932346 intron CG32204 - chr3L 18932413 intron CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-712 1054 chr3L 18933625 18933636 chr3L 18933719 18933730 5 94 4.0 1.5 2.8 1.3 105 chr3L 18933625 intron CG32204 - chr3L 18933678 intron CG32204 - chr3L 18933730 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-712 1055 chr3L 18941182 18941204 chr3L 18941293 18941315 9 111 3.0 5.5 4.2 1.7 133 chr3L 18941182 intron CG32204 - chr3L 18941248 intron CG32204 - chr3L 18941315 intron CG32204 - chr3L_9_18940001 chr3L_18940001 RAL-712 1056 chr3L 19008847 19008862 chr3L 19009185 19009200 jockey 10 338 5.0 5.5 5.2 1.6 353 chr3L 19008847 intron nkd - chr3L 19009024 intron nkd - chr3L 19009200 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-712 1057 chr3L 19082037 19082069 chr3L 19082139 19082171 6 102 1.0 1.5 1.2 2.7 134 chr3L 19082037 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_6_19080001 chr3L_19080001 RAL-712 1058 chr3L 19115636 19115669 chr3L 19115814 19115846 BS 5 178 4.0 3.5 3.8 1.0 210 chr3L 19115636 intron CG14082 - chr3L 19115741 intron CG14082 - chr3L 19115846 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-712 1059 chr3L 19117040 19117075 chr3L 19124487 19124522 mdg1 9 7446 2.5 3.0 2.8 2.4 7482 chr3L 19117040 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-712 1060 chr3L 19208059 19208091 chr3L 19209433 19209465 Doc 6 1374 1.0 3.0 2.0 2.0 1406 chr3L 19208059 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209465 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-712 1061 chr3L 19210124 19210141 chr3L 19210217 19210237 4 95 0.0 2.0 1.0 2.0 113 chr3L 19210124 intron fz2 - chr3L 19210180 intron fz2 - chr3L 19210237 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-712 1062 chr3L 19248864 19248883 chr3L 19249036 19249055 4 172 0.5 2.5 1.5 1.6 191 chr3L 19248864 intergenic not near genes chr3L 19248960 intergenic not near genes chr3L 19249055 intergenic not near genes chr3L_4_19245001 chr3L_19245001 RAL-712 1063 chr3L 19253821 19253840 chr3L 19253898 19253917 4 77 2.5 1.0 1.8 1.4 96 chr3L 19253821 3` UTR mRpL21 - chr3L 19253869 3` UTR mRpL21 - chr3L 19253917 3` UTR mRpL21 - chr3L_4_19250001 chr3L_19250001 RAL-712 1064 chr3L 19269816 19269849 chr3L 19270020 19270049 7 202 3.0 1.0 2.0 2.3 233 chr3L 19269816 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270049 intron,exon CG14085 +,CG14088 - chr3L_7_19265001 chr3L_19265001 RAL-712 1065 chr3L 19369845 19369862 chr3L 19369927 19369944 4 82 2.0 2.5 2.2 1.2 99 chr3L 19369845 intron CG32206 - chr3L 19369894 intron CG32206 - chr3L 19369944 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-712 1066 chr3L 19378288 19378314 chr3L 19378676 19378702 7 388 2.0 3.5 2.8 1.8 414 chr3L 19378288 intron CG32206 - chr3L 19378495 intron CG32206 - chr3L 19378702 intron CG32206 - chr3L_7_19375001 chr3L_19375001 RAL-712 1067 chr3L 19417802 19417832 chr3L 19417879 19417912 8 80 2.0 2.0 2.0 2.7 110 chr3L 19417802 intergenic not near genes chr3L 19417857 intergenic not near genes chr3L 19417912 intergenic not near genes chr3L_8_19415001 chr3L_19415001 RAL-712 1068 chr3L 19426752 19426775 chr3L 19426828 19426852 6 77 2.5 1.0 1.8 2.1 100 chr3L 19426752 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426852 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-712 1069 chr3L 19430409 19430435 chr3L 19430487 19430513 8 78 0.5 7.0 3.8 1.7 104 chr3L 19430409 intergenic not near genes chr3L 19430461 intergenic not near genes chr3L 19430513 intergenic not near genes chr3L_8_19430001 chr3L_19430001 RAL-712 1070 chr3L 19513885 19513907 chr3L 19514378 19514400 4 493 3.0 2.0 2.5 1.1 515 chr3L 19513885 intergenic not near genes chr3L 19514142 intergenic not near genes chr3L 19514400 intergenic not near genes chr3L_4_19510001 chr3L_19510001 RAL-712 1071 chr3L 19527922 19527955 chr3L 19528001 19528034 7 79 2.0 2.0 2.0 2.3 112 chr3L 19527922 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528034 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-712 1072 chr3L 19544240 19544265 chr3L 19544316 19544336 10 75 1.5 0.5 1.0 5.0 96 chr3L 19544240 intergenic CG9279 -,l(3)76BDr - chr3L 19544288 intergenic l(3)76BDr -,CG9279 - chr3L 19544336 intergenic l(3)76BDr -,CG9279 - chr3L_10_19540001 chr3L_19540001 RAL-712 1073 chr3L 19848508 19848523 chr3L 19857698 19857713 roo 7 9190 2.5 0.5 1.5 2.8 9205 chr3L 19848508 intron Papss + chr3L 19853110 intron Papss + chr3L 19857713 intron Papss + chr3L_7_19850001 chr3L_19850001 RAL-712 1074 chr3L 19933541 19933554 chr3L 19934363 19934376 7 822 3.5 2.0 2.8 1.8 835 chr3L 19933541 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934376 intergenic CR45678 + chr3L_7_19930001 chr3L_19930001 RAL-712 1075 chr3L 19981211 19981225 chr3L 19981291 19981305 4 80 2.5 1.0 1.8 1.4 94 chr3L 19981211 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981305 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-712 1076 chr3L 20082794 20082803 chr3L 20082891 20082900 5 97 4.5 0.5 2.5 1.4 106 chr3L 20082794 intron sNPF-R - chr3L 20082847 intron sNPF-R - chr3L 20082900 intron sNPF-R - chr3L_5_20080001 chr3L_20080001 RAL-712 1077 chr3L 20112190 20112217 chr3L 20112266 20112293 13 76 2.5 2.0 2.2 4.1 103 chr3L 20112190 intergenic CG14187 - chr3L 20112242 intergenic CG14187 - chr3L 20112293 3` UTR CG14187 - chr3L_13_20110001 chr3L_20110001 RAL-712 1078 chr3L 20113670 20113690 chr3L 20122927 20122947 roo 4 9257 1.5 4.0 2.8 1.1 9277 chr3L 20113670 intergenic not near genes chr3L 20118308 intergenic not near genes chr3L 20122947 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-712 1079 chr3L 20143086 20143102 chr3L 20143166 20143182 5 80 1.0 3.5 2.2 1.6 96 chr3L 20143086 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143182 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-712 1080 chr3L 20150732 20150750 chr3L 20150863 20150881 6 131 4.0 2.0 3.0 1.5 149 chr3L 20150732 3` UTR CG42674 - chr3L 20150806 3` UTR CG42674 - chr3L 20150881 3` UTR CG42674 - chr3L_6_20150001 chr3L_20150001 RAL-712 1081 chr3L 20257336 20257356 chr3L 20258456 20258475 pogo 10 1120 1.0 3.0 2.0 3.3 1139 chr3L 20257336 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258475 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-712 1082 chr3L 20262801 20262829 chr3L 20262912 20262941 16 112 4.5 9.5 7.0 2.0 140 chr3L 20262801 exon rdgC + chr3L 20262871 intron rdgC + chr3L 20262941 intron rdgC + chr3L_16_20260001 chr3L_20260001 RAL-712 1083 chr3L 20386937 20386957 chr3L 20387039 20387059 8 102 4.0 1.0 2.5 2.3 122 chr3L 20386937 intron fbl + chr3L 20386998 intron fbl + chr3L 20387059 intron fbl + chr3L_8_20385001 chr3L_20385001 RAL-712 1084 chr3L 20402194 20402212 chr3L 20402274 20402293 4 81 2.5 2.0 2.2 1.2 99 chr3L 20402194 intergenic not near genes chr3L 20402244 intergenic not near genes chr3L 20402293 intergenic not near genes chr3L_4_20400001 chr3L_20400001 RAL-712 1085 chr3L 20403584 20403603 chr3L 20403679 20403698 4 95 3.0 4.5 3.8 0.8 114 chr3L 20403584 intergenic not near genes chr3L 20403641 intergenic not near genes chr3L 20403698 intergenic not near genes chr3L_4_20400001 chr3L_20400001 RAL-712 1086 chr3L 20476753 20476785 chr3L 20484352 20484384 springer 10 7599 1.0 2.5 1.8 3.6 7631 chr3L 20476753 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_10_20480001 chr3L_20480001 RAL-712 1087 chr3L 20590062 20590095 chr3L 20590601 20590633 412 8 538 2.0 1.5 1.8 2.9 571 chr3L 20590062 intergenic not near genes chr3L 20590348 intergenic not near genes chr3L 20590633 intergenic not near genes chr3L_8_20590001 chr3L_20590001 RAL-712 1088 chr3L 20680944 20680966 chr3L 20681239 20681260 10 295 2.0 3.0 2.5 2.9 316 chr3L 20680944 intergenic not near genes chr3L 20681102 intergenic not near genes chr3L 20681260 intergenic not near genes chr3L_10_20680001 chr3L_20680001 RAL-712 1089 chr3L 20821295 20821311 chr3L 20824764 20824780 NOF 4 3469 2.0 7.5 4.8 0.7 3485 chr3L 20821295 intron Pka-R1 + chr3L 20823038 intron Pka-R1 + chr3L 20824780 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-712 1090 chr3L 20826362 20826390 chr3L 20826553 20826581 8 190 4.0 2.0 3.0 2.0 219 chr3L 20826362 intron Pka-R1 + chr3L 20826472 intron Pka-R1 + chr3L 20826581 intron Pka-R1 + chr3L_8_20825001 chr3L_20825001 RAL-712 1091 chr3L 20849275 20849300 chr3L 20849354 20849379 8 79 1.5 4.0 2.8 2.1 104 chr3L 20849275 intron CG32432 - chr3L 20849327 intron CG32432 - chr3L 20849379 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-712 1092 chr3L 20902700 20902721 chr3L 20902782 20902802 8 82 2.0 4.0 3.0 2.0 102 chr3L 20902700 intergenic CR45383 + chr3L 20902751 intergenic CR45383 + chr3L 20902802 intergenic CR45383 + chr3L_8_20900001 chr3L_20900001 RAL-712 1093 chr3L 20964617 20964644 chr3L 20964694 20964719 9 76 3.0 2.5 2.8 2.4 102 chr3L 20964617 3` UTR CG12983 - chr3L 20964668 3` UTR CG12983 - chr3L 20964719 3` UTR CG12983 - chr3L_9_20960001 chr3L_20960001 RAL-712 1094 chr3L 20986762 20986788 chr3L 20986839 20986866 13 77 1.5 5.0 3.2 3.1 104 chr3L 20986762 intergenic not near genes chr3L 20986814 intergenic not near genes chr3L 20986866 intergenic not near genes chr3L_13_20985001 chr3L_20985001 RAL-712 1095 chr3L 21014914 21014940 chr3L 21023395 21023419 Tirant 5 8481 4.5 1.0 2.8 1.3 8505 chr3L 21014914 intron skd - chr3L 21019166 intron skd - chr3L 21023419 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-712 1096 chr3L 21039686 21039700 chr3L 21039776 21039791 5 91 1.0 3.0 2.0 1.7 105 chr3L 21039686 intron siz + chr3L 21039738 intron siz + chr3L 21039791 intron siz + chr3L_5_21035001 chr3L_21035001 RAL-712 1097 chr3L 21065479 21065509 chr3L 21065567 21065597 7 88 2.5 4.0 3.2 1.7 118 chr3L 21065479 intron siz + chr3L 21065538 intron siz + chr3L 21065597 intron siz + chr3L_7_21065001 chr3L_21065001 RAL-712 1098 chr3L 21082215 21082240 chr3L 21082293 21082316 7 78 1.0 2.0 1.5 2.8 101 chr3L 21082215 intron ko - chr3L 21082266 intron ko - chr3L 21082316 intron ko - chr3L_7_21080001 chr3L_21080001 RAL-712 1099 chr3L 21151864 21151894 chr3L 21156948 21156978 flea 9 5084 2.0 3.5 2.8 2.4 5114 chr3L 21151864 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-712 1100 chr3L 21236629 21236654 chr3L 21236714 21236740 5 86 4.0 0.0 2.0 1.7 111 chr3L 21236629 intron Eip78C + chr3L 21236684 intron Eip78C + chr3L 21236740 intron Eip78C + chr3L_5_21235001 chr3L_21235001 RAL-712 1101 chr3L 21295771 21295797 chr3L 21296192 21296217 4 420 4.5 2.0 3.2 1.0 446 chr3L 21295771 exon Cpr78Cb + chr3L 21295994 exon Cpr78Cb + chr3L 21296217 3` UTR Cpr78Cb + chr3L_4_21295001 chr3L_21295001 RAL-712 1102 chr3L 21301730 21301765 chr3L 21301816 21301851 10 86 1.0 2.0 1.5 4.0 121 chr3L 21301730 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301851 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_10_21300001 chr3L_21300001 RAL-712 1103 chr3L 21306153 21306178 chr3L 21315312 21315336 roo 4 9159 3.5 0.5 2.0 1.3 9183 chr3L 21306153 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315336 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-712 1104 chr3L 21361730 21361752 chr3L 21362684 21362706 G2 5 954 3.0 2.0 2.5 1.4 976 chr3L 21361730 intergenic not near genes chr3L 21362218 intergenic not near genes chr3L 21362706 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-712 1105 chr3L 21362853 21362883 chr3L 21362937 21362967 6 84 1.0 1.5 1.2 2.7 114 chr3L 21362853 intergenic not near genes chr3L 21362910 intergenic not near genes chr3L 21362967 intergenic not near genes chr3L_6_21360001 chr3L_21360001 RAL-712 1106 chr3L 21395141 21395162 chr3L 21395229 21395250 8 88 4.0 3.0 3.5 1.8 109 chr3L 21395141 intron rgn + chr3L 21395196 intron rgn + chr3L 21395250 intron rgn + chr3L_8_21395001 chr3L_21395001 RAL-712 1107 chr3L 21406992 21407023 chr3L 21407071 21407102 8 79 2.5 4.5 3.5 1.8 110 chr3L 21406992 intron rgn + chr3L 21407047 intron rgn + chr3L 21407102 intron rgn + chr3L_8_21405001 chr3L_21405001 RAL-712 1108 chr3L 21412746 21412753 chr3L 21412823 21412831 4 78 4.0 2.0 3.0 1.0 85 chr3L 21412746 intron rgn + chr3L 21412788 intron rgn + chr3L 21412831 intron rgn + chr3L_4_21410001 chr3L_21410001 RAL-712 1109 chr3L 21498835 21498861 chr3L 21500471 21500495 1360 8 1636 5.0 3.5 4.2 1.5 1660 chr3L 21498835 intron Glg1 - chr3L 21499665 intron Glg1 - chr3L 21500495 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-712 1110 chr3L 21639189 21639213 chr3L 21639275 21639299 8 86 1.5 3.5 2.5 2.3 110 chr3L 21639189 intergenic CG32444 +,CG32445 + chr3L 21639244 intergenic CG32445 +,CG32444 + chr3L 21639299 intergenic CG32445 +,CG32444 + chr3L_8_21635001 chr3L_21635001 RAL-712 1111 chr3L 21749321 21749330 chr3L 21754481 21754490 Doc 6 5158 4.5 5.5 5.0 1.0 5169 chr3L 21749321 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754490 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-712 1112 chr3L 21840838 21840864 chr3L 21840962 21840988 8 124 4.0 2.0 3.0 2.0 150 chr3L 21840838 intron P5CDh1 - chr3L 21840913 intron P5CDh1 - chr3L 21840988 intron P5CDh1 - chr3L_8_21840001 chr3L_21840001 RAL-712 1113 chr3L 21950334 21950356 chr3L 21950411 21950432 4 76 2.5 5.0 3.8 0.8 98 chr3L 21950334 exon CG7448 + chr3L 21950383 exon CG7448 + chr3L 21950432 intron CG7448 + chr3L_4_21950001 chr3L_21950001 RAL-712 1114 chr3L 21975684 21975707 chr3L 21975918 21975941 4 234 1.5 2.5 2.0 1.3 257 chr3L 21975684 intron CG7470 + chr3L 21975812 intron CG7470 + chr3L 21975941 intron CG7470 + chr3L_4_21975001 chr3L_21975001 RAL-712 1115 chr3L 21994439 21994456 chr3L 21994520 21994537 5 81 1.0 2.0 1.5 2.0 98 chr3L 21994439 intergenic not near genes chr3L 21994488 intergenic not near genes chr3L 21994537 intergenic not near genes chr3L_5_21990001 chr3L_21990001 RAL-712 1116 chr3L 22008850 22008882 chr3L 22008927 22008959 12 77 2.0 5.0 3.5 2.7 109 chr3L 22008850 intergenic not near genes chr3L 22008904 intergenic not near genes chr3L 22008959 intergenic not near genes chr3L_12_22005001 chr3L_22005001 RAL-712 1117 chr3L 22124809 22124839 chr3L 22124892 22124920 5 82 3.0 2.0 2.5 1.4 111 chr3L 22124809 intergenic not near genes chr3L 22124864 intergenic not near genes chr3L 22124920 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-712 1118 chr3L 22130499 22130522 chr3L 22130645 22130666 8 146 1.0 1.5 1.2 3.6 167 chr3L 22130499 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130666 intergenic not near genes chr3L_8_22130001 chr3L_22130001 RAL-712 1119 chr3L 22152178 22152202 chr3L 22152261 22152285 4 83 0.5 1.5 1.0 2.0 107 chr3L 22152178 intron olf413 + chr3L 22152232 intron olf413 + chr3L 22152285 intron olf413 + chr3L_4_22150001 chr3L_22150001 RAL-712 1120 chr3L 22447205 22447231 chr3L 22447296 22447322 10 91 2.0 6.0 4.0 2.0 117 chr3L 22447205 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-712 1121 chr3L 22543729 22543744 chr3L 22543806 22543821 9 77 5.5 2.0 3.8 1.9 92 chr3L 22543729 intergenic not near genes chr3L 22543775 intergenic not near genes chr3L 22543821 intergenic not near genes chr3L_9_22540001 chr3L_22540001 RAL-712 1122 chr3L 22555775 22555798 chr3L 22563244 22563267 blood 5 7470 2.0 0.5 1.2 2.3 7492 chr3L 22555775 intergenic not near genes chr3L 22559521 intergenic not near genes chr3L 22563267 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-712 1123 chr3L 22570427 22570457 chr3L 22570571 22570601 12 144 0.5 1.5 1.0 6.0 174 chr3L 22570427 intergenic not near genes chr3L 22570514 intergenic not near genes chr3L 22570601 intergenic not near genes chr3L_12_22570001 chr3L_22570001 RAL-712 1124 chr3L 22577614 22577632 chr3L 22582402 22582420 Doc 5 4788 4.0 6.0 5.0 0.8 4806 chr3L 22577614 intergenic not near genes chr3L 22580017 intergenic not near genes chr3L 22582420 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-712 1125 chr3L 22617188 22617221 chr3L 22624640 22624672 blood 9 7451 3.0 3.5 3.2 2.1 7484 chr3L 22617188 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-712 1126 chr3L 22630738 22630774 chr3L 22630817 22630853 11 79 1.0 3.5 2.2 3.4 115 chr3L 22630738 intron CG14459 - chr3L 22630796 intron CG14459 - chr3L 22630853 intron CG14459 - chr3L_11_22630001 chr3L_22630001 RAL-712 1127 chr3L 22652320 22652340 chr3L 22652457 22652477 13 138 3.0 3.0 3.0 3.2 157 chr3L 22652320 exon CG33772 - chr3L 22652398 intron CG33772 - chr3L 22652477 exon CG33772 - chr3L_13_22650001 chr3L_22650001 RAL-712 1128 chr3L 22761386 22761419 chr3L 22766820 22766853 Ivk 10 5434 1.5 4.5 3.0 2.5 5467 chr3L 22761386 intron SPoCk + chr3L 22764120 intron SPoCk + chr3L 22766853 intron SPoCk + chr3L_10_22760001 chr3L_22760001 RAL-712 1129 chr3L 22865986 22866011 chr3L 22867119 22867144 Doc 5 1133 1.5 2.0 1.8 1.8 1158 chr3L 22865986 intron CG33170 + chr3L 22866565 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-712 1130 chr3L 22897195 22897226 chr3L 22897278 22897309 8 82 1.0 4.5 2.8 2.1 114 chr3L 22897195 intergenic not near genes chr3L 22897252 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_8_22895001 chr3L_22895001 RAL-712 1131 chr3L 22928837 22928844 chr3L 22928930 22928937 4 93 5.0 3.0 4.0 0.8 100 chr3L 22928837 intergenic not near genes chr3L 22928887 intergenic not near genes chr3L 22928937 intergenic not near genes chr3L_4_22925001 chr3L_22925001 RAL-712 1132 chr3L 22989866 22989892 chr3L 22996839 22996865 297 5 6973 1.5 3.0 2.2 1.6 6999 chr3L 22989866 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996865 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-712 1133 chr3L 23042224 23042258 chr3L 23048977 23049011 gypsy6 7 6753 1.5 1.0 1.2 3.2 6787 chr3L 23042224 intergenic not near genes chr3L 23045618 intergenic not near genes chr3L 23049011 intergenic not near genes chr3L_7_23045001 chr3L_23045001 RAL-712 1134 chr3L 23182262 23182295 chr3L 23182376 23182408 11 113 3.0 4.5 3.8 2.3 146 chr3L 23182262 intron CG34031 + chr3L 23182335 intron CG34031 + chr3L 23182408 intron CG34031 + chr3L_11_23180001 chr3L_23180001 RAL-712 1135 chr3L 22908066 22908067 chr3L 23657065 23657066 5 748999 14.0 3.5 8.8 0.5 749000 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657066 intron AGO3 + chr3L_5_23280001 chr3L_23280001 RAL-712 1136 chr3L 24168786 24168801 chr3L 24176123 24176138 ZAM 6 7336 3.5 2.5 3.0 1.5 7352 chr3L 24168786 intron Snap25 + chr3L 24172462 intron Snap25 + chr3L 24176138 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-712 1137 chr3L 25074313 25074336 chr3L 25074458 25074480 7 144 2.0 2.5 2.2 2.2 167 chr3L 25074313 intergenic not near genes chr3L 25074396 intergenic not near genes chr3L 25074480 intergenic not near genes chr3L_7_25070001 chr3L_25070001 RAL-712 1138 chr3L 25331642 25331649 chr3L 25331733 25331740 5 91 3.5 2.5 3.0 1.2 98 chr3L 25331642 intergenic not near genes chr3L 25331691 intergenic not near genes chr3L 25331740 intergenic not near genes chr3L_5_25330001 chr3L_25330001 RAL-712 1139 chr3L 25343635 25343648 chr3L 25346402 25346415 5 2767 1.0 4.0 2.5 1.4 2780 chr3L 25343635 intergenic not near genes chr3L 25345025 intergenic not near genes chr3L 25346415 intergenic not near genes chr3L_5_25345001 chr3L_25345001 RAL-712 1140 chr3L 25464085 25464098 chr3L 25464183 25464196 4 98 11.5 12.5 12.0 0.3 111 chr3L 25464085 intergenic not near genes chr3L 25464140 intergenic not near genes chr3L 25464196 intergenic not near genes chr3L_4_25460001 chr3L_25460001 RAL-712 1141 chr3L 25514702 25514718 chr3L 25514849 25514866 5 148 2.0 2.0 2.0 1.7 164 chr3L 25514702 intron CG41343 - chr3L 25514784 intron CG41343 - chr3L 25514866 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-712 1142 chr3L 25628498 25628528 chr3L 25633268 25633297 F-element 13 4771 1.0 4.0 2.5 3.7 4799 chr3L 25628498 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633297 intron CG41343 - chr3L_13_25630001 chr3L_25630001 RAL-712 1143 chr3L 25842485 25842499 chr3L 25842571 25842585 4 86 3.0 3.5 3.2 1.0 100 chr3L 25842485 intron CG40178 - chr3L 25842535 intron CG40178 - chr3L 25842585 intron CG40178 - chr3L_4_25840001 chr3L_25840001 RAL-712 1144 chr3L 25995936 25995952 chr3L 25996016 25996033 4 81 0.5 5.0 2.8 1.1 97 chr3L 25995936 intron CG40178 - chr3L 25995984 intron CG40178 - chr3L 25996033 intron CG40178 - chr3L_4_25995001 chr3L_25995001 RAL-712 1145 chr3L 26694925 26694958 chr3L 26695005 26695037 4 80 2.0 1.5 1.8 1.4 112 chr3L 26694925 intergenic not near genes chr3L 26694981 intergenic not near genes chr3L 26695037 intergenic not near genes chr3L_4_26690001 chr3L_26690001 RAL-712 1146 chr3L 27368877 27368907 chr3L 27369422 27369452 8 545 3.0 1.0 2.0 2.7 575 chr3L 27368877 intron Dbp80 + chr3L 27369164 intron Dbp80 + chr3L 27369452 intron Dbp80 + chr3L_8_27365001 chr3L_27365001 RAL-712 1147 chr3R 1939052 1939075 chr3R 1939146 1939169 7 94 3.0 1.5 2.2 2.2 117 chr3R 1939052 intergenic not near genes chr3R 1939110 intergenic not near genes chr3R 1939169 intergenic not near genes chr3R_7_1935001 chr3R_1935001 RAL-712 1148 chr3R 2534141 2534163 chr3R 2541710 2541732 10 7568 15.0 17.0 16.0 0.6 7591 chr3R 2534141 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_10_2535001 chr3R_2535001 RAL-712 1149 chr3R 3525753 3525774 chr3R 3525845 3525866 6 91 0.5 2.0 1.2 2.7 113 chr3R 3525753 intron Parp - chr3R 3525810 intron Parp - chr3R 3525866 intron Parp - chr3R_6_3525001 chr3R_3525001 RAL-712 1150 chr3R 3578376 3578405 chr3R 3578456 3578485 5 80 3.5 2.0 2.8 1.3 109 chr3R 3578376 intron Parp - chr3R 3578430 intron Parp - chr3R 3578485 intron Parp - chr3R_5_3575001 chr3R_3575001 RAL-712 1151 chr3R 3752756 3752761 chr3R 3752837 3752844 4 82 1.0 2.5 1.8 1.4 88 chr3R 3752756 intergenic CG41128 + chr3R 3752800 intergenic CG41128 + chr3R 3752844 intergenic CG41128 + chr3R_4_3750001 chr3R_3750001 RAL-712 1152 chr3R 4012511 4012530 chr3R 4012600 4012618 4 88 3.5 3.0 3.2 1.0 107 chr3R 4012511 intergenic not near genes chr3R 4012564 intergenic not near genes chr3R 4012618 intergenic not near genes chr3R_4_4010001 chr3R_4010001 RAL-712 1153 chr3R 4150556 4150583 chr3R 4150638 4150665 9 81 3.0 2.0 2.5 2.6 109 chr3R 4150556 intergenic not near genes chr3R 4150610 intergenic not near genes chr3R 4150665 intergenic not near genes chr3R_9_4150001 chr3R_4150001 RAL-712 1154 chr3R 4152037 4152065 chr3R 4152143 4152170 6 105 13.0 16.0 14.5 0.4 133 chr3R 4152037 intergenic not near genes chr3R 4152104 intergenic not near genes chr3R 4152170 intergenic not near genes chr3R_6_4150001 chr3R_4150001 RAL-712 1155 chr3R 4206078 4206104 chr3R 4211653 4211679 mdg3 7 5575 2.0 2.5 2.2 2.2 5601 chr3R 4206078 intron CG14636 - chr3R 4208878 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-712 1156 chr3R 4290009 4290031 chr3R 4290519 4290541 7 510 0.5 3.5 2.0 2.3 532 chr3R 4290009 intron cpx + chr3R 4290275 intron cpx + chr3R 4290541 intron cpx + chr3R_7_4290001 chr3R_4290001 RAL-712 1157 chr3R 4366759 4366778 chr3R 4375142 4375161 roo 5 8383 3.0 2.5 2.8 1.3 8402 chr3R 4366759 3` UTR CG1090 + chr3R 4370960 intergenic not near genes chr3R 4375161 5` UTR CR44922 + chr3R_5_4370001 chr3R_4370001 RAL-712 1158 chr3R 4408414 4408442 chr3R 4412718 4412746 Juan 6 4304 3.0 2.0 2.5 1.7 4332 chr3R 4408414 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-712 1159 chr3R 4568710 4568729 chr3R 4568797 4568816 4 86 2.5 4.5 3.5 0.9 106 chr3R 4568710 intergenic not near genes chr3R 4568763 intergenic not near genes chr3R 4568816 intergenic not near genes chr3R_4_4565001 chr3R_4565001 RAL-712 1160 chr3R 4609546 4609578 chr3R 4610710 4610742 1360 9 1164 2.0 1.0 1.5 3.6 1196 chr3R 4609546 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-712 1161 chr3R 4683177 4683209 chr3R 4684936 4684967 S-element 4 1758 2.0 3.5 2.8 1.1 1790 chr3R 4683177 intron CG43427 + chr3R 4684072 intron CG43427 + chr3R 4684967 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-712 1162 chr3R 4753241 4753261 chr3R 4757544 4757564 F-element 6 4301 6.5 8.0 7.2 0.7 4323 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757564 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-712 1163 chr3R 4759718 4759752 chr3R 4761215 4761248 hopper2 8 1497 3.5 3.0 3.2 1.9 1530 chr3R 4759718 intron,intron atms +,CG44098 - chr3R 4760483 intron,intron atms +,CG44098 - chr3R 4761248 intron,intron atms +,CG44098 - chr3R_8_4760001 chr3R_4760001 RAL-712 1164 chr3R 4796110 4796139 chr3R 4796233 4796262 8 123 2.5 2.0 2.2 2.5 152 chr3R 4796110 intron ctrip - chr3R 4796186 intron ctrip - chr3R 4796262 intron ctrip - chr3R_8_4795001 chr3R_4795001 RAL-712 1165 chr3R 4861572 4861593 chr3R 4861653 4861674 11 80 5.5 3.0 4.2 2.1 102 chr3R 4861572 intron opa + chr3R 4861623 intron opa + chr3R 4861674 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-712 1166 chr3R 4887489 4887512 chr3R 4894865 4894889 rover 4 7377 1.0 4.0 2.5 1.1 7400 chr3R 4887489 intergenic not near genes chr3R 4891189 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-712 1167 chr3R 5045844 5045861 chr3R 5052946 5052963 HMS-Beagle 7 7102 8.0 1.5 4.8 1.2 7119 chr3R 5045844 intron CR43635 - chr3R 5049404 intergenic not near genes chr3R 5052963 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-712 1168 chr3R 5067984 5068012 chr3R 5073501 5073527 mdg3 11 5517 1.5 3.0 2.2 3.4 5543 chr3R 5067984 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_11_5070001 chr3R_5070001 RAL-712 1169 chr3R 5158145 5158176 chr3R 5158238 5158269 10 93 2.0 2.5 2.2 3.1 124 chr3R 5158145 intron dpr16 + chr3R 5158207 intron dpr16 + chr3R 5158269 intron dpr16 + chr3R_10_5155001 chr3R_5155001 RAL-712 1170 chr3R 5161955 5161964 chr3R 5162032 5162040 4 77 4.0 0.0 2.0 1.3 85 chr3R 5161955 intron dpr16 + chr3R 5161998 intron dpr16 + chr3R 5162040 intron dpr16 + chr3R_4_5160001 chr3R_5160001 RAL-712 1171 chr3R 5278090 5278123 chr3R 5278171 5278203 11 81 2.0 4.5 3.2 2.6 113 chr3R 5278090 intron mtd - chr3R 5278146 intron mtd - chr3R 5278203 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-712 1172 chr3R 5338396 5338426 chr3R 5343573 5343603 Rt1c 16 5177 6.5 2.5 4.5 2.9 5207 chr3R 5338396 intron mtd - chr3R 5341000 intron mtd - chr3R 5343603 intron mtd - chr3R_16_5340001 chr3R_5340001 RAL-712 1173 chr3R 5445964 5445994 chr3R 5452423 5452454 Burdock 6 6460 0.0 0.5 0.2 5.0 6490 chr3R 5445964 intron CG14669 + chr3R 5449209 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-712 1174 chr3R 5519592 5519620 chr3R 5519727 5519757 5 136 2.0 1.0 1.5 2.0 165 chr3R 5519592 intron,intron Nmdar1 -,Itp-r83A + chr3R 5519674 intron,intron Nmdar1 -,Itp-r83A + chr3R 5519757 intron,intron Nmdar1 -,Itp-r83A + chr3R_5_5515001 chr3R_5515001 RAL-712 1175 chr3R 5726089 5726125 chr3R 5726251 5726287 8 162 1.0 0.5 0.8 4.4 198 chr3R 5726089 intergenic not near genes chr3R 5726188 intergenic not near genes chr3R 5726287 intergenic not near genes chr3R_8_5725001 chr3R_5725001 RAL-712 1176 chr3R 5746026 5746044 chr3R 5746267 5746285 pogo 6 241 2.0 2.5 2.2 1.9 259 chr3R 5746026 3` UTR Madm + chr3R 5746156 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-712 1177 chr3R 5747021 5747047 chr3R 5753210 5753238 diver 5 6190 3.0 1.5 2.2 1.6 6217 chr3R 5747021 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753238 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-712 1178 chr3R 5765628 5765656 chr3R 5765712 5765739 16 83 4.0 5.0 4.5 2.9 111 chr3R 5765628 intron CG2082 - chr3R 5765684 intron CG2082 - chr3R 5765739 intron CG2082 - chr3R_16_5765001 chr3R_5765001 RAL-712 1179 chr3R 5769239 5769265 chr3R 5769337 5769363 10 98 1.5 1.5 1.5 4.0 124 chr3R 5769239 intron CG2082 - chr3R 5769301 intron CG2082 - chr3R 5769363 intron CG2082 - chr3R_10_5765001 chr3R_5765001 RAL-712 1180 chr3R 5772378 5772403 chr3R 5772536 5772561 11 158 3.5 3.0 3.2 2.6 183 chr3R 5772378 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772561 intron CG2082 - chr3R_11_5770001 chr3R_5770001 RAL-712 1181 chr3R 5809120 5809142 chr3R 5809361 5809383 pogo 7 241 1.0 1.5 1.2 3.2 263 chr3R 5809120 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-712 1182 chr3R 5822378 5822413 chr3R 5823545 5823576 1360 12 1167 2.5 3.5 3.0 3.0 1198 chr3R 5822378 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_12_5820001 chr3R_5820001 RAL-712 1183 chr3R 5840821 5840850 chr3R 5840910 5840939 16 89 6.5 6.5 6.5 2.1 118 chr3R 5840821 intergenic CG1213 + chr3R 5840880 intergenic CG1213 + chr3R 5840939 intergenic CG1213 + chr3R_16_5840001 chr3R_5840001 RAL-712 1184 chr3R 5927563 5927591 chr3R 5927803 5927831 pogo 9 240 2.0 3.5 2.8 2.4 268 chr3R 5927563 intron CG34113 - chr3R 5927697 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_9_5925001 chr3R_5925001 RAL-712 1185 chr3R 6015968 6015983 chr3R 6024449 6024463 Tirant 5 8481 2.0 2.0 2.0 1.7 8495 chr3R 6015968 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024463 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-712 1186 chr3R 6124226 6124255 chr3R 6124310 6124339 11 84 1.0 1.0 1.0 5.5 113 chr3R 6124226 3` UTR Vha14-2 + chr3R 6124282 3` UTR Vha14-2 + chr3R 6124339 3` UTR Vha14-2 + chr3R_11_6120001 chr3R_6120001 RAL-712 1187 chr3R 6148480 6148496 chr3R 6148577 6148594 4 98 2.5 3.0 2.8 1.1 114 chr3R 6148480 intergenic not near genes chr3R 6148537 intergenic not near genes chr3R 6148594 intergenic not near genes chr3R_4_6145001 chr3R_6145001 RAL-712 1188 chr3R 6158515 6158540 chr3R 6167098 6167122 Tirant 7 8583 1.5 2.0 1.8 2.5 8607 chr3R 6158515 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167122 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-712 1189 chr3R 6510025 6510042 chr3R 6515106 6515123 jockey 5 5080 5.0 1.0 3.0 1.2 5098 chr3R 6510025 intergenic not near genes chr3R 6512574 intergenic not near genes chr3R 6515123 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-712 1190 chr3R 6519114 6519137 chr3R 6519222 6519245 5 108 7.0 0.0 3.5 1.1 131 chr3R 6519114 intergenic not near genes chr3R 6519180 intergenic not near genes chr3R 6519245 intergenic not near genes chr3R_5_6515001 chr3R_6515001 RAL-712 1191 chr3R 6538212 6538227 chr3R 6538303 6538321 8 96 2.0 0.5 1.2 3.6 109 chr3R 6538212 intron dpr11 - chr3R 6538266 intron dpr11 - chr3R 6538321 exon dpr11 - chr3R_8_6535001 chr3R_6535001 RAL-712 1192 chr3R 6550325 6550352 chr3R 6550406 6550432 6 81 2.5 3.5 3.0 1.5 107 chr3R 6550325 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550432 intron dpr11 - chr3R_6_6550001 chr3R_6550001 RAL-712 1193 chr3R 6551118 6551143 chr3R 6551212 6551237 4 94 3.0 1.5 2.2 1.2 119 chr3R 6551118 intron dpr11 - chr3R 6551178 intron dpr11 - chr3R 6551237 intron dpr11 - chr3R_4_6550001 chr3R_6550001 RAL-712 1194 chr3R 6639912 6639927 chr3R 6639990 6640005 6 78 1.0 0.0 0.5 4.0 93 chr3R 6639912 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640005 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-712 1195 chr3R 6698010 6698039 chr3R 6698089 6698118 10 79 2.0 3.5 2.8 2.6 108 chr3R 6698010 intergenic not near genes chr3R 6698064 intergenic not near genes chr3R 6698118 intergenic not near genes chr3R_10_6695001 chr3R_6695001 RAL-712 1196 chr3R 6737501 6737527 chr3R 6739287 6739314 Doc 4 1786 1.0 2.5 1.8 1.4 1813 chr3R 6737501 intron pb - chr3R 6738408 intron pb - chr3R 6739314 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-712 1197 chr3R 6780448 6780483 chr3R 6780531 6780566 10 83 1.5 1.5 1.5 4.0 118 chr3R 6780448 intergenic not near genes chr3R 6780507 intergenic not near genes chr3R 6780566 intergenic not near genes chr3R_10_6780001 chr3R_6780001 RAL-712 1198 chr3R 6782432 6782470 chr3R 6782511 6782549 9 79 2.0 1.5 1.8 3.2 117 chr3R 6782432 intergenic not near genes chr3R 6782490 intergenic not near genes chr3R 6782549 intergenic not near genes chr3R_9_6780001 chr3R_6780001 RAL-712 1199 chr3R 6807264 6807292 chr3R 6807346 6807374 6 82 2.5 1.0 1.8 2.1 110 chr3R 6807264 intergenic not near genes chr3R 6807319 intergenic not near genes chr3R 6807374 intergenic not near genes chr3R_6_6805001 chr3R_6805001 RAL-712 1200 chr3R 6813481 6813511 chr3R 6813761 6813791 11 280 2.0 3.0 2.5 3.1 310 chr3R 6813481 intron CR42651 - chr3R 6813636 intron CR42651 - chr3R 6813791 intron CR42651 - chr3R_11_6810001 chr3R_6810001 RAL-712 1201 chr3R 6862226 6862252 chr3R 6862313 6862339 4 87 2.5 4.0 3.2 1.0 113 chr3R 6862226 intergenic not near genes chr3R 6862282 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_4_6860001 chr3R_6860001 RAL-712 1202 chr3R 6912118 6912122 chr3R 6912229 6912233 5 111 0.5 0.5 0.5 3.3 115 chr3R 6912118 intron Antp - chr3R 6912176 intron Antp - chr3R 6912233 intron Antp - chr3R_5_6910001 chr3R_6910001 RAL-712 1203 chr3R 6961183 6961203 chr3R 6961262 6961282 5 79 2.0 6.5 4.2 1.0 99 chr3R 6961183 intron Antp - chr3R 6961232 intron Antp - chr3R 6961282 intron Antp - chr3R_5_6960001 chr3R_6960001 RAL-712 1204 chr3R 7103290 7103311 chr3R 7103366 7103387 5 75 2.0 2.5 2.2 1.6 97 chr3R 7103290 intron Alh - chr3R 7103338 intron Alh - chr3R 7103387 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-712 1205 chr3R 7126509 7126533 chr3R 7126604 7126628 5 95 1.0 1.5 1.2 2.3 119 chr3R 7126509 3` UTR CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126628 3` UTR CG10068 - chr3R_5_7125001 chr3R_7125001 RAL-712 1206 chr3R 7173681 7173710 chr3R 7173761 7173790 5 80 0.5 2.5 1.5 2.0 109 chr3R 7173681 intron sas + chr3R 7173736 intron sas + chr3R 7173790 intron sas + chr3R_5_7170001 chr3R_7170001 RAL-712 1207 chr3R 7206875 7206902 chr3R 7206963 7206991 10 88 3.0 1.5 2.2 3.1 116 chr3R 7206875 intergenic CG1288 - chr3R 7206933 intergenic CG1288 - chr3R 7206991 intergenic CG1288 - chr3R_10_7205001 chr3R_7205001 RAL-712 1208 chr3R 7385586 7385614 chr3R 7385662 7385690 10 76 3.0 1.5 2.2 3.1 104 chr3R 7385586 intergenic not near genes chr3R 7385638 intergenic not near genes chr3R 7385690 intergenic not near genes chr3R_10_7385001 chr3R_7385001 RAL-712 1209 chr3R 7447991 7448011 chr3R 7448069 7448089 7 78 1.5 5.0 3.2 1.7 98 chr3R 7447991 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448089 intergenic not near genes chr3R_7_7445001 chr3R_7445001 RAL-712 1210 chr3R 7464693 7464717 chr3R 7464779 7464802 8 86 4.0 3.0 3.5 1.8 109 chr3R 7464693 intergenic not near genes chr3R 7464748 intergenic not near genes chr3R 7464802 intergenic not near genes chr3R_8_7460001 chr3R_7460001 RAL-712 1211 chr3R 7621557 7621563 chr3R 7621647 7621653 4 90 0.5 4.0 2.2 1.2 96 chr3R 7621557 intron CG34127 - chr3R 7621605 intron CG34127 - chr3R 7621653 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-712 1212 chr3R 7677917 7677945 chr3R 7678030 7678058 6 113 0.5 1.0 0.8 3.3 141 chr3R 7677917 intron Nlg1 + chr3R 7677988 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_6_7675001 chr3R_7675001 RAL-712 1213 chr3R 7694587 7694603 chr3R 7713648 7713664 invader3 4 19061 1.0 3.0 2.0 1.3 19077 chr3R 7694587 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713664 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-712 1214 chr3R 7724440 7724477 chr3R 7724530 7724567 12 89 3.0 1.5 2.2 3.8 127 chr3R 7724440 3` UTR CG2616 + chr3R 7724504 3` UTR CG2616 + chr3R 7724567 3` UTR CG2616 + chr3R_12_7720001 chr3R_7720001 RAL-712 1215 chr3R 7729465 7729499 chr3R 7737403 7737437 Stalker2 7 7938 2.0 2.5 2.2 2.2 7972 chr3R 7729465 intergenic not near genes chr3R 7733451 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-712 1216 chr3R 7849656 7849667 chr3R 7850823 7850834 1360 5 1167 1.5 1.5 1.5 2.0 1178 chr3R 7849656 intron CG34384 + chr3R 7850245 intron CG34384 + chr3R 7850834 intron CG34384 + chr3R_5_7850001 chr3R_7850001 RAL-712 1217 chr3R 7973315 7973343 chr3R 7974377 7974405 1360 8 1062 0.5 1.5 1.0 4.0 1090 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974405 intergenic CD98hc - chr3R_8_7970001 chr3R_7970001 RAL-712 1218 chr3R 8090270 8090299 chr3R 8090447 8090474 6 176 4.0 0.5 2.2 1.9 204 chr3R 8090270 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090474 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-712 1219 chr3R 8094409 8094440 chr3R 8099714 8099745 Transpac 9 5305 3.0 3.5 3.2 2.1 5336 chr3R 8094409 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-712 1220 chr3R 8101779 8101790 chr3R 8104863 8104874 G2 4 3084 4.5 2.0 3.2 1.0 3095 chr3R 8101779 exon CG7900 + chr3R 8103326 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-712 1221 chr3R 8107385 8107418 chr3R 8107519 8107550 9 134 2.5 1.0 1.8 3.2 165 chr3R 8107385 intron puc + chr3R 8107468 intron puc + chr3R 8107550 intron puc + chr3R_9_8105001 chr3R_8105001 RAL-712 1222 chr3R 8207567 8207586 chr3R 8208412 8208431 F-element 7 844 2.0 5.0 3.5 1.6 864 chr3R 8207567 intergenic not near genes chr3R 8207999 intergenic not near genes chr3R 8208431 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-712 1223 chr3R 8213021 8213035 chr3R 8213101 8213118 4 82 6.5 2.0 4.2 0.8 97 chr3R 8213021 intergenic not near genes chr3R 8213070 intergenic not near genes chr3R 8213118 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-712 1224 chr3R 8267848 8267881 chr3R 8267929 8267962 8 81 0.5 2.5 1.5 3.2 114 chr3R 8267848 3` UTR Mcm2 + chr3R 8267905 3` UTR Mcm2 + chr3R 8267962 3` UTR CG9630 - chr3R_8_8265001 chr3R_8265001 RAL-712 1225 chr3R 8339241 8339247 chr3R 21907534 21907536 23 13568290 17.5 10.5 14.0 1.5 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_23_15120001 chr3R_15120001 RAL-712 1226 chr3R 8393579 8393605 chr3R 8393663 8393688 5 83 1.5 2.0 1.8 1.8 109 chr3R 8393579 intron CG45263 - chr3R 8393634 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-712 1227 chr3R 8403009 8403034 chr3R 8412174 8412200 roo 17 9166 5.5 3.5 4.5 3.1 9191 chr3R 8403009 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412200 intron CG45263 - chr3R_17_8405001 chr3R_8405001 RAL-712 1228 chr3R 8478079 8478108 chr3R 8478159 8478187 6 80 0.0 0.5 0.2 5.0 108 chr3R 8478079 intergenic CG45263 - chr3R 8478133 intergenic not near genes chr3R 8478187 intergenic not near genes chr3R_6_8475001 chr3R_8475001 RAL-712 1229 chr3R 8552367 8552401 chr3R 8552447 8552481 4 78 1.5 1.0 1.2 1.8 114 chr3R 8552367 intergenic Or85d + chr3R 8552424 intergenic Or85d + chr3R 8552481 intergenic Or85d + chr3R_4_8550001 chr3R_8550001 RAL-712 1230 chr3R 8563563 8563596 chr3R 8563674 8563707 7 111 2.0 2.0 2.0 2.3 144 chr3R 8563563 3` UTR CR44291 - chr3R 8563635 3` UTR CR44291 - chr3R 8563707 3` UTR CR44291 - chr3R_7_8560001 chr3R_8560001 RAL-712 1231 chr3R 8570478 8570497 chr3R 8575113 8575133 HMS-Beagle 10 4636 1.0 0.5 0.8 5.6 4655 chr3R 8570478 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575133 intergenic not near genes chr3R_10_8570001 chr3R_8570001 RAL-712 1232 chr3R 8596281 8596299 chr3R 8596393 8596411 4 112 2.0 3.5 2.8 1.1 130 chr3R 8596281 intron 5-HT2B + chr3R 8596346 intron 5-HT2B + chr3R 8596411 intron 5-HT2B + chr3R_4_8595001 chr3R_8595001 RAL-712 1233 chr3R 8601772 8601799 chr3R 8610925 8610952 roo 7 9153 2.0 2.5 2.2 2.2 9180 chr3R 8601772 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-712 1234 chr3R 8707367 8707387 chr3R 8709807 8709827 jockey 11 2441 2.5 2.5 2.5 3.1 2460 chr3R 8707367 intergenic not near genes chr3R 8708597 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-712 1235 chr3R 8745748 8745778 chr3R 8745859 8745889 5 111 3.0 2.0 2.5 1.4 141 chr3R 8745748 intron CG9801 - chr3R 8745818 intron CG9801 - chr3R 8745889 intron CG9801 - chr3R_5_8745001 chr3R_8745001 RAL-712 1236 chr3R 8882071 8882088 chr3R 8882162 8882179 7 91 1.0 3.0 2.0 2.3 108 chr3R 8882071 intron pyd - chr3R 8882125 intron pyd - chr3R 8882179 intron pyd - chr3R_7_8880001 chr3R_8880001 RAL-712 1237 chr3R 8894878 8894906 chr3R 8896034 8896061 1360 8 1156 1.0 3.5 2.2 2.5 1183 chr3R 8894878 intron pyd - chr3R 8895470 intron pyd - chr3R 8896061 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-712 1238 chr3R 9083151 9083175 chr3R 9083236 9083260 7 85 0.5 2.5 1.5 2.8 109 chr3R 9083151 intron pum - chr3R 9083206 intron pum - chr3R 9083260 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-712 1239 chr3R 9101837 9101872 chr3R 9101935 9101970 9 98 1.0 2.0 1.5 3.6 133 chr3R 9101837 intron pum - chr3R 9101904 intron pum - chr3R 9101970 intron pum - chr3R_9_9100001 chr3R_9100001 RAL-712 1240 chr3R 9141163 9141185 chr3R 9141252 9141274 7 89 4.0 2.0 3.0 1.8 111 chr3R 9141163 intron pum - chr3R 9141218 intron pum - chr3R 9141274 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-712 1241 chr3R 9204027 9204050 chr3R 9204419 9204437 4 391 2.5 2.5 2.5 1.1 410 chr3R 9204027 intron pum - chr3R 9204232 intron pum - chr3R 9204437 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-712 1242 chr3R 9227936 9227966 chr3R 9228050 9228080 12 114 2.0 3.0 2.5 3.4 144 chr3R 9227936 intron pum - chr3R 9228008 intron pum - chr3R 9228080 intron pum - chr3R_12_9225001 chr3R_9225001 RAL-712 1243 chr3R 9278781 9278800 chr3R 9284041 9284059 Rt1a 6 5260 3.0 3.5 3.2 1.4 5278 chr3R 9278781 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284059 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-712 1244 chr3R 9361817 9361846 chr3R 9362058 9362087 pogo 4 241 1.5 1.0 1.2 1.8 270 chr3R 9361817 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362087 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-712 1245 chr3R 9419881 9419910 chr3R 9419980 9420009 8 99 2.0 1.5 1.8 2.9 128 chr3R 9419881 intron ps + chr3R 9419945 intron ps + chr3R 9420009 intron ps + chr3R_8_9415001 chr3R_9415001 RAL-712 1246 chr3R 9447443 9447457 chr3R 9447546 9447560 4 103 3.0 4.0 3.5 0.9 117 chr3R 9447443 intron ps + chr3R 9447502 intron ps + chr3R 9447560 intron ps + chr3R_4_9445001 chr3R_9445001 RAL-712 1247 chr3R 9524017 9524048 chr3R 9524105 9524136 8 87 1.5 0.0 0.8 4.4 119 chr3R 9524017 intron CG8176 + chr3R 9524076 intron CG8176 + chr3R 9524136 intron CG8176 + chr3R_8_9520001 chr3R_9520001 RAL-712 1248 chr3R 9620954 9620956 chr3R 21907534 21907536 6 12286580 12.0 10.5 11.2 0.5 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-712 1249 chr3R 9699973 9699995 chr3R 9700062 9700084 1360 6 88 4.5 4.0 4.2 1.2 111 chr3R 9699973 intron Unc-115a - chr3R 9700028 intron Unc-115a - chr3R 9700084 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-712 1250 chr3R 9836880 9836901 chr3R 9836968 9836989 9 88 1.0 5.0 3.0 2.2 109 chr3R 9836880 intron Teh1 - chr3R 9836934 intron Teh1 - chr3R 9836989 intron Teh1 - chr3R_9_9835001 chr3R_9835001 RAL-712 1251 chr3R 9996306 9996332 chr3R 9996644 9996670 10 338 2.0 1.5 1.8 3.6 364 chr3R 9996306 exon Gr85a - chr3R 9996488 exon Gr85a - chr3R 9996670 exon Gr85a - chr3R_10_9995001 chr3R_9995001 RAL-712 1252 chr3R 10021482 10021508 chr3R 10021571 10021597 8 89 1.5 2.0 1.8 2.9 115 chr3R 10021482 intron Mical - chr3R 10021540 intron Mical - chr3R 10021597 intron Mical - chr3R_8_10020001 chr3R_10020001 RAL-712 1253 chr3R 10140432 10140460 chr3R 10140522 10140551 4 90 0.0 0.0 0.0 4.0 119 chr3R 10140432 3` UTR TAF1B - chr3R 10140492 3` UTR TAF1B - chr3R 10140551 3` UTR TAF1B - chr3R_4_10140001 chr3R_10140001 RAL-712 1254 chr3R 10192285 10192302 chr3R 10192471 10192488 7 186 0.5 2.0 1.2 3.2 203 chr3R 10192285 intron Syn + chr3R 10192386 intron Syn + chr3R 10192488 intron Syn + chr3R_7_10190001 chr3R_10190001 RAL-712 1255 chr3R 10231790 10231811 chr3R 10237367 10237388 mdg3 4 5577 0.5 3.0 1.8 1.4 5598 chr3R 10231790 intron CG42795 + chr3R 10234589 intron CG42795 + chr3R 10237388 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-712 1256 chr3R 10401895 10401923 chr3R 10402085 10402109 8 189 4.0 3.5 3.8 1.7 214 chr3R 10401895 exon mthl11 + chr3R 10402002 intron mthl11 + chr3R 10402109 exon mthl11 + chr3R_8_10400001 chr3R_10400001 RAL-712 1257 chr3R 10430675 10430704 chr3R 10430764 10430792 9 88 2.5 4.0 3.2 2.1 117 chr3R 10430675 intergenic not near genes chr3R 10430734 intergenic not near genes chr3R 10430792 intergenic not near genes chr3R_9_10430001 chr3R_10430001 RAL-712 1258 chr3R 10491771 10491808 chr3R 10491855 10491892 12 84 1.0 3.0 2.0 4.0 121 chr3R 10491771 intergenic not near genes chr3R 10491832 intergenic not near genes chr3R 10491892 intergenic not near genes chr3R_12_10490001 chr3R_10490001 RAL-712 1259 chr3R 10507250 10507284 chr3R 10507337 10507371 7 86 1.0 2.5 1.8 2.5 121 chr3R 10507250 intergenic hth - chr3R 10507310 intergenic hth - chr3R 10507371 intergenic hth - chr3R_7_10505001 chr3R_10505001 RAL-712 1260 chr3R 10563132 10563145 chr3R 10563212 10563225 4 80 3.0 2.0 2.5 1.1 93 chr3R 10563132 intron hth - chr3R 10563178 intron hth - chr3R 10563225 intron hth - chr3R_4_10560001 chr3R_10560001 RAL-712 1261 chr3R 10723763 10723795 chr3R 10723855 10723887 10 92 1.0 0.0 0.5 6.7 124 chr3R 10723763 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723887 intergenic not near genes chr3R_10_10720001 chr3R_10720001 RAL-712 1262 chr3R 10727647 10727673 chr3R 10727727 10727753 14 80 2.5 1.0 1.8 5.0 106 chr3R 10727647 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727753 intergenic not near genes chr3R_14_10725001 chr3R_10725001 RAL-712 1263 chr3R 10732324 10732346 chr3R 10733196 10733217 9 872 2.0 2.5 2.2 2.8 893 chr3R 10732324 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733217 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-712 1264 chr3R 10817221 10817253 chr3R 10817304 10817336 6 83 1.5 0.0 0.8 3.3 115 chr3R 10817221 3` UTR CG4089 + chr3R 10817278 3` UTR CG4089 + chr3R 10817336 3` UTR CG4089 + chr3R_6_10815001 chr3R_10815001 RAL-712 1265 chr3R 10870863 10870898 chr3R 10870944 10870979 13 81 3.0 3.5 3.2 3.1 116 chr3R 10870863 intergenic Fdh -,Tsp86D + chr3R 10870921 3` UTR Fdh - chr3R 10870979 3` UTR Fdh - chr3R_13_10870001 chr3R_10870001 RAL-712 1266 chr3R 10919690 10919716 chr3R 10919768 10919794 6 78 2.5 3.0 2.8 1.6 104 chr3R 10919690 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-712 1267 chr3R 10920053 10920075 chr3R 10920131 10920153 7 78 2.5 4.0 3.2 1.7 100 chr3R 10920053 intergenic not near genes chr3R 10920103 intergenic not near genes chr3R 10920153 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-712 1268 chr3R 10957870 10957885 chr3R 10963255 10963270 Rt1c 4 5385 5.0 6.5 5.8 0.6 5400 chr3R 10957870 intergenic not near genes chr3R 10960570 intergenic not near genes chr3R 10963270 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-712 1269 chr3R 10963568 10963579 chr3R 10963662 10963673 4 94 3.5 2.0 2.8 1.1 105 chr3R 10963568 intergenic not near genes chr3R 10963620 intergenic not near genes chr3R 10963673 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-712 1270 chr3R 10987276 10987300 chr3R 10988142 10988166 6 867 0.5 1.0 0.8 3.3 890 chr3R 10987276 intron CG34114 + chr3R 10987721 intron CG34114 + chr3R 10988166 intron CG34114 + chr3R_6_10985001 chr3R_10985001 RAL-712 1271 chr3R 11073642 11073654 chr3R 11073876 11073888 6 234 4.0 2.0 3.0 1.5 246 chr3R 11073642 intergenic not near genes chr3R 11073765 intergenic not near genes chr3R 11073888 intergenic not near genes chr3R_6_11070001 chr3R_11070001 RAL-712 1272 chr3R 11085459 11085484 chr3R 11085536 11085561 7 77 0.0 1.5 0.8 3.9 102 chr3R 11085459 3` UTR CR44940 - chr3R 11085510 intergenic CR44940 - chr3R 11085561 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-712 1273 chr3R 11085777 11085804 chr3R 11086072 11086099 8 295 1.0 1.5 1.2 3.6 322 chr3R 11085777 intergenic CR44940 - chr3R 11085938 intergenic CR44940 - chr3R 11086099 intergenic not near genes chr3R_8_11085001 chr3R_11085001 RAL-712 1274 chr3R 11102323 11102346 chr3R 11102404 11102427 9 80 3.5 3.0 3.2 2.1 104 chr3R 11102323 intergenic not near genes chr3R 11102375 intergenic not near genes chr3R 11102427 intergenic not near genes chr3R_9_11100001 chr3R_11100001 RAL-712 1275 chr3R 11109034 11109054 chr3R 11109152 11109172 7 118 2.0 2.0 2.0 2.3 138 chr3R 11109034 intergenic not near genes chr3R 11109103 intergenic not near genes chr3R 11109172 intergenic not near genes chr3R_7_11105001 chr3R_11105001 RAL-712 1276 chr3R 11149873 11149896 chr3R 11149967 11149993 9 97 4.5 2.0 3.2 2.1 120 chr3R 11149873 intergenic not near genes chr3R 11149933 intergenic not near genes chr3R 11149993 intergenic not near genes chr3R_9_11145001 chr3R_11145001 RAL-712 1277 chr3R 11151667 11151697 chr3R 11156560 11156590 5 4893 16.0 8.5 12.2 0.4 4923 chr3R 11151667 3` UTR Ugt86Di - chr3R 11154128 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156590 intergenic Ugt86Dc + chr3R_5_11150001 chr3R_11150001 RAL-712 1278 chr3R 11248878 11248911 chr3R 11248987 11249019 9 109 0.5 1.0 0.8 5.0 141 chr3R 11248878 3` UTR CR43283 - chr3R 11248948 3` UTR CR43283 - chr3R 11249019 3` UTR CR43283 - chr3R_9_11245001 chr3R_11245001 RAL-712 1279 chr3R 11294468 11294498 chr3R 11294779 11294809 7 311 1.5 1.0 1.2 3.2 341 chr3R 11294468 intron CR31386 - chr3R 11294638 intron CR31386 - chr3R 11294809 intron CR31386 - chr3R_7_11290001 chr3R_11290001 RAL-712 1280 chr3R 11307189 11307221 chr3R 11307276 11307305 10 86 3.0 1.0 2.0 3.3 116 chr3R 11307189 intergenic not near genes chr3R 11307247 intergenic not near genes chr3R 11307305 intergenic not near genes chr3R_10_11305001 chr3R_11305001 RAL-712 1281 chr3R 11379239 11379260 chr3R 11388394 11388415 roo 6 9154 3.5 3.5 3.5 1.3 9176 chr3R 11379239 intron pros + chr3R 11383827 intron pros + chr3R 11388415 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-712 1282 chr3R 11518812 11518848 chr3R 11518903 11518939 8 91 0.5 5.0 2.8 2.1 127 chr3R 11518812 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518939 intergenic not near genes chr3R_8_11515001 chr3R_11515001 RAL-712 1283 chr3R 11683811 11683835 chr3R 11683889 11683915 10 79 3.5 2.5 3.0 2.5 104 chr3R 11683811 intron CG6830 - chr3R 11683863 intron CG6830 - chr3R 11683915 intron CG6830 - chr3R_10_11680001 chr3R_11680001 RAL-712 1284 chr3R 11734162 11734172 chr3R 11734281 11734288 5 118 2.5 2.5 2.5 1.4 126 chr3R 11734162 intergenic not near genes chr3R 11734225 intergenic not near genes chr3R 11734288 intergenic not near genes chr3R_5_11730001 chr3R_11730001 RAL-712 1285 chr3R 11841062 11841097 chr3R 11846253 11846287 BS 13 5191 1.5 1.5 1.5 5.2 5225 chr3R 11841062 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_13_11840001 chr3R_11840001 RAL-712 1286 chr3R 11916426 11916462 chr3R 11916505 11916541 9 79 1.5 2.5 2.0 3.0 115 chr3R 11916426 intron Cad87A - chr3R 11916484 intron Cad87A - chr3R 11916541 intron Cad87A - chr3R_9_11915001 chr3R_11915001 RAL-712 1287 chr3R 11930232 11930268 chr3R 11930316 11930352 18 84 2.0 5.0 3.5 4.0 120 chr3R 11930232 intron Cad87A - chr3R 11930292 intron Cad87A - chr3R 11930352 intron Cad87A - chr3R_18_11930001 chr3R_11930001 RAL-712 1288 chr3R 11945384 11945406 chr3R 11945481 11945504 4 98 3.5 2.0 2.8 1.1 120 chr3R 11945384 intron Cad87A - chr3R 11945444 intron Cad87A - chr3R 11945504 intron Cad87A - chr3R_4_11945001 chr3R_11945001 RAL-712 1289 chr3R 12022884 12022908 chr3R 12025061 12025085 pogo 10 2177 1.5 2.0 1.8 3.6 2201 chr3R 12022884 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025085 intergenic not near genes chr3R_10_12020001 chr3R_12020001 RAL-712 1290 chr3R 12145990 12146013 chr3R 12146071 12146095 9 82 1.0 3.5 2.2 2.8 105 chr3R 12145990 intron dpr15 - chr3R 12146042 intron dpr15 - chr3R 12146095 intron dpr15 - chr3R_9_12145001 chr3R_12145001 RAL-712 1291 chr3R 12180043 12180067 chr3R 12180127 12180153 10 86 4.0 3.0 3.5 2.2 110 chr3R 12180043 intergenic not near genes chr3R 12180098 intergenic not near genes chr3R 12180153 intergenic not near genes chr3R_10_12180001 chr3R_12180001 RAL-712 1292 chr3R 12247145 12247174 chr3R 12247230 12247259 5 85 1.5 2.0 1.8 1.8 114 chr3R 12247145 intergenic not near genes chr3R 12247202 intergenic not near genes chr3R 12247259 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-712 1293 chr3R 12392893 12392899 chr3R 12392990 12392999 4 99 2.0 5.5 3.8 0.8 106 chr3R 12392893 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392946 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392999 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-712 1294 chr3R 12602396 12602415 chr3R 12602474 12602493 6 78 0.5 2.5 1.5 2.4 97 chr3R 12602396 intergenic not near genes chr3R 12602444 intergenic not near genes chr3R 12602493 intergenic not near genes chr3R_6_12600001 chr3R_12600001 RAL-712 1295 chr3R 12733850 12733885 chr3R 12733930 12733964 10 80 1.0 3.0 2.0 3.3 114 chr3R 12733850 intergenic not near genes chr3R 12733907 intergenic not near genes chr3R 12733964 intergenic not near genes chr3R_10_12730001 chr3R_12730001 RAL-712 1296 chr3R 12748962 12748986 chr3R 12749055 12749079 9 93 3.0 3.0 3.0 2.2 117 chr3R 12748962 intron beat-Vc - chr3R 12749020 intron beat-Vc - chr3R 12749079 intron beat-Vc - chr3R_9_12745001 chr3R_12745001 RAL-712 1297 chr3R 12804806 12804814 chr3R 12805188 12805197 11 382 4.5 2.5 3.5 2.4 391 chr3R 12804806 intergenic not near genes chr3R 12805002 intergenic not near genes chr3R 12805197 intergenic not near genes chr3R_11_12805001 chr3R_12805001 RAL-712 1298 chr3R 13067111 13067130 chr3R 13067187 13067206 4 76 0.0 2.0 1.0 2.0 95 chr3R 13067111 intron sim + chr3R 13067158 intron sim + chr3R 13067206 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-712 1299 chr3R 13104420 13104421 chr3R 21907534 21907535 4 8803114 16.0 10.5 13.2 0.3 8803115 chr3R 13104420 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-712 1300 chr3R 13120775 13120796 chr3R 13120852 13120872 5 77 4.0 3.0 3.5 1.1 97 chr3R 13120775 intron timeout + chr3R 13120824 intron timeout + chr3R 13120872 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-712 1301 chr3R 13205413 13205441 chr3R 13205494 13205522 8 81 2.5 5.5 4.0 1.6 109 chr3R 13205413 intergenic not near genes chr3R 13205468 intergenic not near genes chr3R 13205522 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-712 1302 chr3R 13206663 13206678 chr3R 13206899 13206914 5 237 1.0 1.5 1.2 2.3 251 chr3R 13206663 intergenic not near genes chr3R 13206788 intergenic not near genes chr3R 13206914 intergenic not near genes chr3R_5_13205001 chr3R_13205001 RAL-712 1303 chr3R 13274219 13274249 chr3R 13274298 13274328 7 79 2.5 3.5 3.0 1.8 109 chr3R 13274219 intergenic not near genes chr3R 13274274 intergenic not near genes chr3R 13274328 intergenic not near genes chr3R_7_13270001 chr3R_13270001 RAL-712 1304 chr3R 13276991 13277025 chr3R 13277080 13277114 12 89 2.5 2.5 2.5 3.4 123 chr3R 13276991 intergenic not near genes chr3R 13277052 intergenic not near genes chr3R 13277114 intergenic not near genes chr3R_12_13275001 chr3R_13275001 RAL-712 1305 chr3R 13314107 13314125 chr3R 13318895 13318913 Doc 4 4788 1.5 1.5 1.5 1.6 4806 chr3R 13314107 intergenic not near genes chr3R 13316510 intergenic not near genes chr3R 13318913 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-712 1306 chr3R 13349010 13349032 chr3R 13349086 13349108 10 76 1.0 3.0 2.0 3.3 98 chr3R 13349010 intergenic not near genes chr3R 13349059 intergenic not near genes chr3R 13349108 intergenic not near genes chr3R_10_13345001 chr3R_13345001 RAL-712 1307 chr3R 13380720 13380749 chr3R 13380808 13380836 8 88 2.0 2.0 2.0 2.7 116 chr3R 13380720 exon CG8870 + chr3R 13380778 exon CG8870 + chr3R 13380836 intron CG8870 + chr3R_8_13380001 chr3R_13380001 RAL-712 1308 chr3R 13418666 13418682 chr3R 13418740 13418758 6 76 2.0 3.0 2.5 1.7 92 chr3R 13418666 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418758 intergenic not near genes chr3R_6_13415001 chr3R_13415001 RAL-712 1309 chr3R 13496630 13496640 chr3R 13496709 13496719 6 79 5.0 0.5 2.8 1.6 89 chr3R 13496630 intergenic not near genes chr3R 13496674 intergenic not near genes chr3R 13496719 intergenic not near genes chr3R_6_13495001 chr3R_13495001 RAL-712 1310 chr3R 13659718 13659848 chr3R 13659824 13659937 4 98 0.0 0.0 0.0 4.0 219 chr3R 13659718 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659937 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-712 1311 chr3R 13672939 13672974 chr3R 13673017 13673052 6 78 2.0 3.0 2.5 1.7 113 chr3R 13672939 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673052 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-712 1312 chr3R 13693028 13693034 chr3R 21907534 21907535 12 8214506 15.0 10.5 12.8 0.9 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 RAL-712 1313 chr3R 13878242 13878269 chr3R 13878341 13878367 10 98 4.5 1.5 3.0 2.5 125 chr3R 13878242 intergenic not near genes chr3R 13878304 intergenic not near genes chr3R 13878367 intergenic not near genes chr3R_10_13875001 chr3R_13875001 RAL-712 1314 chr3R 13948238 13948254 chr3R 13948316 13948332 5 78 1.5 2.0 1.8 1.8 94 chr3R 13948238 intergenic CG31517 + chr3R 13948285 intergenic CG31517 + chr3R 13948332 intergenic CG31517 + chr3R_5_13945001 chr3R_13945001 RAL-712 1315 chr3R 13975373 13975405 chr3R 13975453 13975485 7 80 0.5 0.5 0.5 4.7 112 chr3R 13975373 intron rdx - chr3R 13975429 intron rdx - chr3R 13975485 intron rdx - chr3R_7_13975001 chr3R_13975001 RAL-712 1316 chr3R 13994305 13994331 chr3R 13994559 13994586 9 255 0.5 0.5 0.5 6.0 281 chr3R 13994305 intron rdx - chr3R 13994446 intron rdx - chr3R 13994586 intron rdx - chr3R_9_13990001 chr3R_13990001 RAL-712 1317 chr3R 14021648 14021679 chr3R 14023465 14023495 S-element 10 1817 2.0 1.5 1.8 3.6 1847 chr3R 14021648 intron rdx - chr3R 14022572 intron rdx - chr3R 14023495 intron rdx - chr3R_10_14020001 chr3R_14020001 RAL-712 1318 chr3R 14067141 14067155 chr3R 14067220 14067234 4 79 1.5 2.5 2.0 1.3 93 chr3R 14067141 exon foxo + chr3R 14067188 intron foxo + chr3R 14067234 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-712 1319 chr3R 14083417 14083424 chr3R 14083518 14083525 4 101 0.5 0.0 0.2 3.3 108 chr3R 14083417 intron foxo + chr3R 14083471 intron foxo + chr3R 14083525 intron foxo + chr3R_4_14080001 chr3R_14080001 RAL-712 1320 chr3R 14117441 14117458 chr3R 14117511 14117534 4 74 3.5 5.0 4.2 0.8 93 chr3R 14117441 intron Kif19A - chr3R 14117488 intron Kif19A - chr3R 14117534 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-712 1321 chr3R 14161465 14161486 chr3R 14161556 14161577 4 91 1.5 2.5 2.0 1.3 112 chr3R 14161465 intergenic not near genes chr3R 14161521 intergenic not near genes chr3R 14161577 intergenic not near genes chr3R_4_14160001 chr3R_14160001 RAL-712 1322 chr3R 14180814 14180833 chr3R 14185579 14185598 F-element 7 4765 1.0 2.0 1.5 2.8 4784 chr3R 14180814 intron Dop1R1 - chr3R 14183206 intron Dop1R1 - chr3R 14185598 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-712 1323 chr3R 14194449 14194461 chr3R 14203598 14203610 roo 6 9149 3.5 5.5 4.5 1.1 9161 chr3R 14194449 intron Dop1R1 - chr3R 14199030 intron Dop1R1 - chr3R 14203610 intron Dop1R1 - chr3R_6_14195001 chr3R_14195001 RAL-712 1324 chr3R 14246396 14246416 chr3R 14247892 14247911 jockey 4 1496 0.5 2.0 1.2 1.8 1515 chr3R 14246396 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247911 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-712 1325 chr3R 14440723 14440739 chr3R 14440799 14440815 5 75 1.0 1.5 1.2 2.3 92 chr3R 14440723 intron cv-c - chr3R 14440769 intron cv-c - chr3R 14440815 intron cv-c - chr3R_5_14440001 chr3R_14440001 RAL-712 1326 chr3R 14548593 14548607 chr3R 14548678 14548695 4 86 1.5 6.5 4.0 0.8 102 chr3R 14548593 intron Pde6 - chr3R 14548644 intron Pde6 - chr3R 14548695 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-712 1327 chr3R 14560895 14560924 chr3R 14560989 14561018 7 94 1.5 1.0 1.2 3.2 123 chr3R 14560895 intergenic CG14850 + chr3R 14560956 5` UTR CG14850 + chr3R 14561018 exon CG14850 + chr3R_7_14560001 chr3R_14560001 RAL-712 1328 chr3R 14579347 14579380 chr3R 14579436 14579469 12 89 3.5 2.0 2.8 3.2 122 chr3R 14579347 intron stumps + chr3R 14579408 intron stumps + chr3R 14579469 intron stumps + chr3R_12_14575001 chr3R_14575001 RAL-712 1329 chr3R 14821613 14821639 chr3R 14821762 14821788 9 149 1.5 1.5 1.5 3.6 175 chr3R 14821613 intron btsz - chr3R 14821700 intron btsz - chr3R 14821788 intron btsz - chr3R_9_14820001 chr3R_14820001 RAL-712 1330 chr3R 14882806 14882837 chr3R 14882888 14882918 8 82 1.5 3.0 2.2 2.5 112 chr3R 14882806 intron Rrp6 - chr3R 14882862 intron Rrp6 - chr3R 14882918 exon Rrp6 - chr3R_8_14880001 chr3R_14880001 RAL-712 1331 chr3R 14963220 14963246 chr3R 14963297 14963323 8 77 0.5 0.5 0.5 5.3 103 chr3R 14963220 intergenic not near genes chr3R 14963272 intergenic not near genes chr3R 14963323 intergenic not near genes chr3R_8_14960001 chr3R_14960001 RAL-712 1332 chr3R 15002374 15002408 chr3R 15002473 15002507 7 98 2.0 1.5 1.8 2.5 133 chr3R 15002374 intergenic not near genes chr3R 15002440 intergenic not near genes chr3R 15002507 intergenic not near genes chr3R_7_15000001 chr3R_15000001 RAL-712 1333 chr3R 15037003 15037030 chr3R 15037086 15037114 7 83 3.0 0.5 1.8 2.5 111 chr3R 15037003 intergenic RpL10Aa + chr3R 15037058 intergenic RpL10Aa + chr3R 15037114 intergenic RpL10Aa + chr3R_7_15035001 chr3R_15035001 RAL-712 1334 chr3R 15041423 15041457 chr3R 15045191 15045225 Doc 5 3768 1.0 1.0 1.0 2.5 3802 chr3R 15041423 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045225 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-712 1335 chr3R 15049461 15049489 chr3R 15049587 15049615 7 126 2.0 5.0 3.5 1.6 154 chr3R 15049461 intergenic not near genes chr3R 15049538 intergenic not near genes chr3R 15049615 intergenic not near genes chr3R_7_15045001 chr3R_15045001 RAL-712 1336 chr3R 15075244 15075266 chr3R 15075328 15075350 6 84 1.5 0.5 1.0 3.0 106 chr3R 15075244 intron dpr9 - chr3R 15075297 intron dpr9 - chr3R 15075350 intron dpr9 - chr3R_6_15075001 chr3R_15075001 RAL-712 1337 chr3R 15102522 15102530 chr3R 15109777 15109785 412 5 7255 0.0 4.0 2.0 1.7 7263 chr3R 15102522 intron CG42788 - chr3R 15106154 intron CG42788 - chr3R 15109785 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-712 1338 chr3R 15132048 15132084 chr3R 15135108 15135144 Juan 4 3060 3.5 2.5 3.0 1.0 3096 chr3R 15132048 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135144 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-712 1339 chr3R 15162554 15162569 chr3R 15167321 15167336 F-element 5 4767 5.5 3.0 4.2 1.0 4782 chr3R 15162554 intron Gyc88E + chr3R 15164945 intron Gyc88E + chr3R 15167336 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-712 1340 chr3R 15168281 15168296 chr3R 15168364 15168379 4 83 2.5 1.5 2.0 1.3 98 chr3R 15168281 intron Gyc88E + chr3R 15168330 intron Gyc88E + chr3R 15168379 intron Gyc88E + chr3R_4_15165001 chr3R_15165001 RAL-712 1341 chr3R 15406135 15406166 chr3R 15406214 15406247 4 80 1.5 0.0 0.8 2.2 112 chr3R 15406135 intron CG6125 - chr3R 15406191 intron CG6125 - chr3R 15406247 intron CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-712 1342 chr3R 15416246 15416283 chr3R 15416326 15416363 7 80 0.5 3.0 1.8 2.5 117 chr3R 15416246 3` UTR Atx2 + chr3R 15416304 3` UTR Atx2 + chr3R 15416363 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-712 1343 chr3R 15594655 15594675 chr3R 15594737 15594758 4 82 0.0 2.0 1.0 2.0 103 chr3R 15594655 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594758 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-712 1344 chr3R 15601164 15601195 chr3R 15608686 15608717 412 11 7522 5.0 2.5 3.8 2.3 7553 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-712 1345 chr3R 15618735 15618750 chr3R 15626208 15626224 blood 12 7473 3.5 3.5 3.5 2.7 7489 chr3R 15618735 intergenic not near genes chr3R 15622480 intergenic not near genes chr3R 15626224 intergenic not near genes chr3R_12_15620001 chr3R_15620001 RAL-712 1346 chr3R 15692524 15692542 chr3R 15692603 15692621 4 79 2.5 3.0 2.8 1.1 97 chr3R 15692524 intergenic not near genes chr3R 15692572 intergenic not near genes chr3R 15692621 intergenic CG31446 + chr3R_4_15690001 chr3R_15690001 RAL-712 1347 chr3R 15694062 15694093 chr3R 15694166 15694197 5 104 2.0 0.5 1.2 2.3 135 chr3R 15694062 exon CG31446 + chr3R 15694130 3` UTR CG31446 + chr3R 15694197 intergenic CG31446 + chr3R_5_15690001 chr3R_15690001 RAL-712 1348 chr3R 15715815 15715836 chr3R 15715900 15715921 6 85 3.5 2.5 3.0 1.5 106 chr3R 15715815 exon CG31294 - chr3R 15715868 intron CG31294 - chr3R 15715921 exon CG31294 - chr3R_6_15715001 chr3R_15715001 RAL-712 1349 chr3R 15734176 15734200 chr3R 15734267 15734291 4 91 3.0 0.5 1.8 1.4 115 chr3R 15734176 intergenic not near genes chr3R 15734234 intergenic not near genes chr3R 15734291 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-712 1350 chr3R 15868942 15868960 chr3R 15869022 15869040 6 80 2.0 0.0 1.0 3.0 98 chr3R 15868942 intron CG31183 - chr3R 15868991 intron CG31183 - chr3R 15869040 intron CG31183 - chr3R_6_15865001 chr3R_15865001 RAL-712 1351 chr3R 15891363 15891383 chr3R 15891451 15891471 4 88 3.0 4.5 3.8 0.8 108 chr3R 15891363 intron CG14877 - chr3R 15891417 intron CG14877 - chr3R 15891471 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-712 1352 chr3R 15899920 15899950 chr3R 15900230 15900260 8 310 3.0 2.5 2.8 2.1 340 chr3R 15899920 intron glob1 - chr3R 15900090 intron glob1 - chr3R 15900260 intron glob1 - chr3R_8_15900001 chr3R_15900001 RAL-712 1353 chr3R 15945953 15945978 chr3R 15946143 15946168 5 190 1.0 2.0 1.5 2.0 215 chr3R 15945953 intron Sap47 + chr3R 15946060 intron Sap47 + chr3R 15946168 intron Sap47 + chr3R_5_15945001 chr3R_15945001 RAL-712 1354 chr3R 15952908 15952928 chr3R 15952989 15953009 4 80 1.0 3.5 2.2 1.2 101 chr3R 15952908 intron Sap47 + chr3R 15952958 intron Sap47 + chr3R 15953009 intron Sap47 + chr3R_4_15950001 chr3R_15950001 RAL-712 1355 chr3R 16013130 16013156 chr3R 16013218 16013243 5 88 2.5 2.0 2.2 1.6 113 chr3R 16013130 intron GATAe + chr3R 16013186 intron GATAe + chr3R 16013243 intron GATAe + chr3R_5_16010001 chr3R_16010001 RAL-712 1356 chr3R 16179080 16179110 chr3R 16179203 16179232 5 122 0.5 2.5 1.5 2.0 152 chr3R 16179080 intron CG8925 + chr3R 16179156 intron CG8925 + chr3R 16179232 intron CG8925 + chr3R_5_16175001 chr3R_16175001 RAL-712 1357 chr3R 16189408 16189443 chr3R 16189811 16189846 invader4 10 403 1.0 0.0 0.5 6.7 438 chr3R 16189408 intron sra + chr3R 16189627 intron sra + chr3R 16189846 intron sra + chr3R_10_16185001 chr3R_16185001 RAL-712 1358 chr3R 16225092 16225114 chr3R 16225177 16225198 7 85 0.0 4.0 2.0 2.3 106 chr3R 16225092 intergenic not near genes chr3R 16225145 intergenic not near genes chr3R 16225198 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-712 1359 chr3R 16284892 16284923 chr3R 16284968 16285001 7 78 1.0 2.5 1.8 2.5 109 chr3R 16284892 intron gish + chr3R 16284946 intron gish + chr3R 16285001 intron gish + chr3R_7_16280001 chr3R_16280001 RAL-712 1360 chr3R 16285801 16285828 chr3R 16285888 16285915 5 87 1.5 1.0 1.2 2.3 114 chr3R 16285801 intron gish + chr3R 16285858 intron gish + chr3R 16285915 intron gish + chr3R_5_16285001 chr3R_16285001 RAL-712 1361 chr3R 16298872 16298906 chr3R 16298957 16298991 7 85 1.5 1.5 1.5 2.8 119 chr3R 16298872 intron gish + chr3R 16298932 intron gish + chr3R 16298991 intron gish + chr3R_7_16295001 chr3R_16295001 RAL-712 1362 chr3R 16472580 16472597 chr3R 16472655 16472672 6 75 3.5 3.5 3.5 1.3 92 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472672 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-712 1363 chr3R 16582907 16582915 chr3R 16582986 16582986 4 76 5.0 5.5 5.2 0.6 79 chr3R 16582907 intron Scp2 - chr3R 16582946 intron Scp2 - chr3R 16582986 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-712 1364 chr3R 16663605 16663637 chr3R 16663682 16663712 7 76 2.0 2.5 2.2 2.2 107 chr3R 16663605 intron Ubx - chr3R 16663658 intron Ubx - chr3R 16663712 intron Ubx - chr3R_7_16660001 chr3R_16660001 RAL-712 1365 chr3R 16756323 16756352 chr3R 16762514 16762543 diver 7 6191 1.5 3.0 2.2 2.2 6220 chr3R 16756323 intron bxd - chr3R 16759433 intron bxd - chr3R 16762543 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-712 1366 chr3R 16779440 16779468 chr3R 16779527 16779555 6 87 2.0 1.5 1.8 2.1 115 chr3R 16779440 intergenic not near genes chr3R 16779498 intergenic not near genes chr3R 16779555 intergenic not near genes chr3R_6_16775001 chr3R_16775001 RAL-712 1367 chr3R 16820260 16820276 chr3R 16820354 16820370 5 94 1.5 2.0 1.8 1.8 110 chr3R 16820260 intron abd-A - chr3R 16820315 intron abd-A - chr3R 16820370 intron abd-A - chr3R_5_16820001 chr3R_16820001 RAL-712 1368 chr3R 17066787 17066812 chr3R 17066870 17066900 12 87 2.5 0.5 1.5 4.8 113 chr3R 17066787 intron Dad + chr3R 17066844 intron Dad + chr3R 17066900 intron Dad + chr3R_12_17065001 chr3R_17065001 RAL-712 1369 chr3R 17184737 17184745 chr3R 17184813 17184821 5 76 0.5 2.0 1.2 2.3 84 chr3R 17184737 intron Mur89F - chr3R 17184779 intron Mur89F - chr3R 17184821 intron Mur89F - chr3R_5_17180001 chr3R_17180001 RAL-712 1370 chr3R 17194415 17194426 chr3R 17194493 17194505 6 79 2.5 1.0 1.8 2.1 90 chr3R 17194415 intron Mur89F - chr3R 17194460 intron Mur89F - chr3R 17194505 intron Mur89F - chr3R_6_17190001 chr3R_17190001 RAL-712 1371 chr3R 17232894 17232917 chr3R 17232991 17233015 5 98 0.0 1.0 0.5 3.3 121 chr3R 17232894 exon beat-IIb - chr3R 17232954 intron beat-IIb - chr3R 17233015 intron beat-IIb - chr3R_5_17230001 chr3R_17230001 RAL-712 1372 chr3R 17273970 17273988 chr3R 17274077 17274095 5 107 3.0 2.5 2.8 1.3 125 chr3R 17273970 intergenic not near genes chr3R 17274032 intergenic not near genes chr3R 17274095 intergenic not near genes chr3R_5_17270001 chr3R_17270001 RAL-712 1373 chr3R 17294667 17294701 chr3R 17295095 17295129 BS 7 428 0.5 2.5 1.5 2.8 462 chr3R 17294667 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295129 intergenic not near genes chr3R_7_17290001 chr3R_17290001 RAL-712 1374 chr3R 17470493 17470505 chr3R 17470595 17470608 5 102 2.0 3.5 2.8 1.3 115 chr3R 17470493 intergenic not near genes chr3R 17470550 intergenic not near genes chr3R 17470608 intergenic not near genes chr3R_5_17470001 chr3R_17470001 RAL-712 1375 chr3R 17591288 17591311 chr3R 17591724 17591744 F-element 5 435 7.0 1.5 4.2 1.0 456 chr3R 17591288 intergenic not near genes chr3R 17591516 intergenic not near genes chr3R 17591744 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-712 1376 chr3R 17823200 17823221 chr3R 17823277 17823290 6 76 4.0 3.5 3.8 1.2 90 chr3R 17823200 intron tinc + chr3R 17823245 intron tinc + chr3R 17823290 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-712 1377 chr3R 17925851 17925889 chr3R 17927317 17927356 hobo 15 1467 1.0 5.5 3.2 3.6 1505 chr3R 17925851 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_15_17925001 chr3R_17925001 RAL-712 1378 chr3R 18041758 18041777 chr3R 18041835 18041854 5 77 0.0 0.5 0.2 4.2 96 chr3R 18041758 intergenic not near genes chr3R 18041806 intergenic not near genes chr3R 18041854 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-712 1379 chr3R 18126208 18126228 chr3R 18126287 18126305 5 79 1.5 1.5 1.5 2.0 97 chr3R 18126208 intron sr + chr3R 18126256 intron sr + chr3R 18126305 intron sr + chr3R_5_18125001 chr3R_18125001 RAL-712 1380 chr3R 18157613 18157615 chr3R 18157721 18157723 4 108 0.0 8.0 4.0 0.8 110 chr3R 18157613 intergenic CR45103 + chr3R 18157668 intergenic CR45103 + chr3R 18157723 5` UTR CR45103 + chr3R_4_18155001 chr3R_18155001 RAL-712 1381 chr3R 18342017 18342041 chr3R 18342090 18342119 4 77 1.5 1.0 1.2 1.8 102 chr3R 18342017 intron CG15803 - chr3R 18342068 intron CG15803 - chr3R 18342119 intron CG15803 - chr3R_4_18340001 chr3R_18340001 RAL-712 1382 chr3R 18376189 18376216 chr3R 18376299 18376326 7 110 3.0 3.0 3.0 1.8 137 chr3R 18376189 5` UTR CR44946 + chr3R 18376258 5` UTR CR44946 + chr3R 18376326 5` UTR CR44946 + chr3R_7_18375001 chr3R_18375001 RAL-712 1383 chr3R 18442797 18442808 chr3R 18442877 18442888 6 80 4.0 5.5 4.8 1.0 91 chr3R 18442797 intron fru - chr3R 18442842 intron fru - chr3R 18442888 intron fru - chr3R_6_18440001 chr3R_18440001 RAL-712 1384 chr3R 18501602 18501618 chr3R 18501683 18501699 7 81 1.5 4.5 3.0 1.8 97 chr3R 18501602 intron fru - chr3R 18501650 intron fru - chr3R 18501699 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-712 1385 chr3R 18528370 18528399 chr3R 18528457 18528486 6 87 1.0 2.0 1.5 2.4 116 chr3R 18528370 intron fru - chr3R 18528428 intron fru - chr3R 18528486 intron fru - chr3R_6_18525001 chr3R_18525001 RAL-712 1386 chr3R 18579577 18579582 chr3R 18579654 18579659 4 76 2.0 0.0 1.0 2.0 82 chr3R 18579577 intron,intron CG7694 +,fray + chr3R 18579618 intron,intron CG7694 +,fray + chr3R 18579659 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-712 1387 chr3R 18606503 18606533 chr3R 18610735 18610765 F-element 9 4232 2.5 3.5 3.0 2.2 4262 chr3R 18606503 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610765 intron,intron qin +,CG14304 - chr3R_9_18605001 chr3R_18605001 RAL-712 1388 chr3R 18622775 18622805 chr3R 18622851 18622880 6 76 1.0 0.0 0.5 4.0 105 chr3R 18622775 intron qin + chr3R 18622828 intron qin + chr3R 18622880 intron qin + chr3R_6_18620001 chr3R_18620001 RAL-712 1389 chr3R 18660835 18660836 chr3R 18662896 18662906 4 2064 24.0 34.5 29.2 0.1 2071 chr3R 18660835 exon CstF-64 + chr3R 18661870 exon Cpsf73 - chr3R 18662906 exon Cpsf73 - chr3R_4_18660001 chr3R_18660001 RAL-712 1390 chr3R 18697384 18697544 chr3R 18697464 18697709 8 154 2.0 2.0 2.0 2.7 325 chr3R 18697384 intergenic not near genes chr3R 18697546 intergenic not near genes chr3R 18697709 intergenic not near genes chr3R_8_18695001 chr3R_18695001 RAL-712 1391 chr3R 18812076 18812105 chr3R 18812154 18812183 14 78 1.0 5.5 3.2 3.3 107 chr3R 18812076 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812183 intron CG18208 - chr3R_14_18810001 chr3R_18810001 RAL-712 1392 chr3R 18965211 18965237 chr3R 18965404 18965430 4 193 1.0 3.5 2.2 1.2 219 chr3R 18965211 intron,intron CG42613 +,CG43732 + chr3R 18965320 intron,intron CG42613 +,CG43732 + chr3R 18965430 intron,intron CG42613 +,CG43732 + chr3R_4_18965001 chr3R_18965001 RAL-712 1393 chr3R 19010028 19010041 chr3R 19010116 19010129 4 87 1.0 3.5 2.2 1.2 101 chr3R 19010028 intron gukh + chr3R 19010078 intron gukh + chr3R 19010129 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-712 1394 chr3R 19013034 19013052 chr3R 19013118 19013136 4 84 0.5 4.5 2.5 1.1 102 chr3R 19013034 intron gukh + chr3R 19013085 intron gukh + chr3R 19013136 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-712 1395 chr3R 19033928 19033940 chr3R 19034005 19034018 4 78 8.0 2.0 5.0 0.7 90 chr3R 19033928 intron CG6026 + chr3R 19033973 intron CG6026 + chr3R 19034018 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-712 1396 chr3R 19140268 19140298 chr3R 19140716 19140746 9 448 1.5 2.5 2.0 3.0 478 chr3R 19140268 3` UTR Ppcs - chr3R 19140507 3` UTR Ppcs - chr3R 19140746 3` UTR Ppcs - chr3R_9_19140001 chr3R_19140001 RAL-712 1397 chr3R 19148736 19148763 chr3R 19148819 19148846 10 83 3.5 4.0 3.8 2.1 110 chr3R 19148736 3` UTR CG5835 - chr3R 19148791 3` UTR CG5835 - chr3R 19148846 3` UTR CG5835 - chr3R_10_19145001 chr3R_19145001 RAL-712 1398 chr3R 19290549 19290569 chr3R 19290625 19290645 7 76 3.5 2.0 2.8 1.8 96 chr3R 19290549 intergenic not near genes chr3R 19290597 intergenic not near genes chr3R 19290645 intergenic not near genes chr3R_7_19290001 chr3R_19290001 RAL-712 1399 chr3R 19340395 19340425 chr3R 19340472 19340502 5 77 3.5 0.5 2.0 1.7 107 chr3R 19340395 intergenic not near genes chr3R 19340448 intergenic not near genes chr3R 19340502 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-712 1400 chr3R 19435513 19435546 chr3R 19435789 19435822 12 276 1.5 3.5 2.5 3.4 309 chr3R 19435513 intron CG31221 + chr3R 19435668 intron CG31221 + chr3R 19435822 intron CG31221 + chr3R_12_19435001 chr3R_19435001 RAL-712 1401 chr3R 19453852 19453869 chr3R 19454001 19454019 4 150 1.5 2.0 1.8 1.4 167 chr3R 19453852 intron CG31221 + chr3R 19453936 intron CG31221 + chr3R 19454019 intron CG31221 + chr3R_4_19450001 chr3R_19450001 RAL-712 1402 chr3R 19466158 19466182 chr3R 19468001 19468021 6 1840 19.5 7.0 13.2 0.4 1863 chr3R 19466158 intron Dys + chr3R 19467090 intron Dys + chr3R 19468021 intron Dys + chr3R_6_19465001 chr3R_19465001 RAL-712 1403 chr3R 19532221 19532249 chr3R 19532297 19532325 7 76 1.5 2.0 1.8 2.5 104 chr3R 19532221 intron Dys + chr3R 19532273 intron Dys + chr3R 19532325 intron Dys + chr3R_7_19530001 chr3R_19530001 RAL-712 1404 chr3R 19602769 19602785 chr3R 19602847 19602863 4 78 2.0 2.0 2.0 1.3 94 chr3R 19602769 intergenic CG7333 + chr3R 19602816 intergenic CG7333 + chr3R 19602863 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-712 1405 chr3R 19702323 19702354 chr3R 19702405 19702436 5 82 1.5 3.0 2.2 1.6 113 chr3R 19702323 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702436 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-712 1406 chr3R 19716220 19716240 chr3R 19716296 19716317 6 77 0.0 0.0 0.0 6.0 97 chr3R 19716220 intergenic CG34286 - chr3R 19716268 intergenic CG34286 - chr3R 19716317 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-712 1407 chr3R 19824514 19824536 chr3R 19824608 19824630 5 94 1.5 4.5 3.0 1.2 116 chr3R 19824514 intron bnl - chr3R 19824572 intron bnl - chr3R 19824630 intron bnl - chr3R_5_19820001 chr3R_19820001 RAL-712 1408 chr3R 19943879 19943899 chr3R 19943959 19943979 5 80 2.5 0.0 1.2 2.3 100 chr3R 19943879 intron Hs6st - chr3R 19943929 intron Hs6st - chr3R 19943979 intron Hs6st - chr3R_5_19940001 chr3R_19940001 RAL-712 1409 chr3R 19950033 19950065 chr3R 19950111 19950143 5 78 3.0 3.0 3.0 1.2 110 chr3R 19950033 intron Hs6st - chr3R 19950088 intron Hs6st - chr3R 19950143 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-712 1410 chr3R 20008831 20008853 chr3R 20008912 20008932 5 81 2.0 3.0 2.5 1.4 101 chr3R 20008831 intergenic MED25 +,Hs6st - chr3R 20008882 intergenic MED25 +,Hs6st - chr3R 20008932 intergenic MED25 +,Hs6st - chr3R_5_20005001 chr3R_20005001 RAL-712 1411 chr3R 20060632 20060656 chr3R 20060715 20060739 8 83 5.0 2.0 3.5 1.8 107 chr3R 20060632 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060739 intergenic not near genes chr3R_8_20060001 chr3R_20060001 RAL-712 1412 chr3R 20077036 20077064 chr3R 20077121 20077149 6 86 1.5 0.0 0.8 3.3 113 chr3R 20077036 intergenic not near genes chr3R 20077092 intergenic not near genes chr3R 20077149 intergenic not near genes chr3R_6_20075001 chr3R_20075001 RAL-712 1413 chr3R 20124568 20124590 chr3R 20124655 20124677 10 87 3.0 0.5 1.8 3.6 109 chr3R 20124568 intergenic not near genes chr3R 20124622 intergenic not near genes chr3R 20124677 intergenic not near genes chr3R_10_20120001 chr3R_20120001 RAL-712 1414 chr3R 20137195 20137225 chr3R 20137322 20137352 7 126 2.5 2.5 2.5 2.0 157 chr3R 20137195 intergenic not near genes chr3R 20137274 intergenic not near genes chr3R 20137352 intergenic not near genes chr3R_7_20135001 chr3R_20135001 RAL-712 1415 chr3R 20252231 20252246 chr3R 20252309 20252324 4 78 0.0 0.0 0.0 4.0 93 chr3R 20252231 intergenic not near genes chr3R 20252278 intergenic cic + chr3R 20252324 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-712 1416 chr3R 20266522 20266548 chr3R 20272993 20273019 Burdock 5 6471 4.5 2.0 3.2 1.2 6497 chr3R 20266522 intron cic + chr3R 20269770 intron cic + chr3R 20273019 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-712 1417 chr3R 20406490 20406518 chr3R 20406589 20406617 6 99 0.0 0.0 0.0 6.0 127 chr3R 20406490 intron Gfrl - chr3R 20406554 intron Gfrl - chr3R 20406617 intron,3` UTR Gfrl -,CG4335 - chr3R_6_20405001 chr3R_20405001 RAL-712 1418 chr3R 20411222 20411242 chr3R 20411437 20411457 6 215 1.0 1.0 1.0 3.0 235 chr3R 20411222 intron Gfrl - chr3R 20411340 intron Gfrl - chr3R 20411457 intron Gfrl - chr3R_6_20410001 chr3R_20410001 RAL-712 1419 chr3R 20516543 20516555 chr3R 20516899 20516909 5 355 2.5 2.0 2.2 1.6 366 chr3R 20516543 intergenic not near genes chr3R 20516726 intergenic not near genes chr3R 20516909 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-712 1420 chr3R 20595602 20595635 chr3R 20595812 20595845 9 210 1.5 0.0 0.8 5.0 243 chr3R 20595602 intron bon + chr3R 20595724 intron bon + chr3R 20595845 intron bon + chr3R_9_20595001 chr3R_20595001 RAL-712 1421 chr3R 20686962 20686988 chr3R 20687397 20687422 6 435 2.0 1.0 1.5 2.4 460 chr3R 20686962 intergenic not near genes chr3R 20687192 intergenic not near genes chr3R 20687422 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-712 1422 chr3R 20703489 20703511 chr3R 20703883 20703905 4 394 1.5 2.0 1.8 1.4 416 chr3R 20703489 intron Oamb - chr3R 20703697 intron Oamb - chr3R 20703905 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-712 1423 chr3R 20707746 20707771 chr3R 20707960 20707986 7 215 2.0 2.0 2.0 2.3 240 chr3R 20707746 intron Oamb - chr3R 20707866 intron Oamb - chr3R 20707986 intron Oamb - chr3R_7_20705001 chr3R_20705001 RAL-712 1424 chr3R 20722852 20722880 chr3R 20722979 20723007 7 127 2.5 1.5 2.0 2.3 155 chr3R 20722852 intergenic not near genes chr3R 20722930 intergenic not near genes chr3R 20723007 intergenic not near genes chr3R_7_20720001 chr3R_20720001 RAL-712 1425 chr3R 20724506 20724527 chr3R 20724596 20724615 5 88 1.5 5.0 3.2 1.2 109 chr3R 20724506 intergenic not near genes chr3R 20724560 intergenic not near genes chr3R 20724615 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-712 1426 chr3R 20735034 20735045 chr3R 20735119 20735131 5 85 2.5 5.0 3.8 1.0 97 chr3R 20735034 intergenic not near genes chr3R 20735082 intergenic not near genes chr3R 20735131 intergenic cdc2c + chr3R_5_20735001 chr3R_20735001 RAL-712 1427 chr3R 20787437 20787454 chr3R 20787528 20787545 5 91 2.5 1.5 2.0 1.7 108 chr3R 20787437 intron Syp + chr3R 20787491 intron Syp + chr3R 20787545 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-712 1428 chr3R 20824818 20824851 chr3R 20824894 20824926 9 76 2.5 1.5 2.0 3.0 108 chr3R 20824818 3` UTR AdSS - chr3R 20824872 3` UTR AdSS - chr3R 20824926 3` UTR AdSS - chr3R_9_20820001 chr3R_20820001 RAL-712 1429 chr3R 20874520 20874550 chr3R 20874605 20874635 11 85 2.5 1.5 2.0 3.7 115 chr3R 20874520 3` UTR TotB + chr3R 20874578 intergenic TotB + chr3R 20874635 intergenic TotB + chr3R_11_20870001 chr3R_20870001 RAL-712 1430 chr3R 21014016 21014045 chr3R 21014094 21014123 9 78 5.5 3.5 4.5 1.6 107 chr3R 21014016 3` UTR Calx + chr3R 21014070 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_9_21010001 chr3R_21010001 RAL-712 1431 chr3R 21141702 21141707 chr3R 21150182 21150185 Tirant 4 8480 1.0 3.5 2.2 1.2 8483 chr3R 21141702 intron SNF4Agamma + chr3R 21145944 intron SNF4Agamma + chr3R 21150185 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-712 1432 chr3R 21186029 21186057 chr3R 21186129 21186157 4 100 0.5 3.0 1.8 1.4 128 chr3R 21186029 intron SNF4Agamma + chr3R 21186093 intron SNF4Agamma + chr3R 21186157 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-712 1433 chr3R 21287649 21287673 chr3R 21288000 21288025 8 352 3.5 2.0 2.8 2.1 376 chr3R 21287649 intron SIFaR - chr3R 21287837 intron SIFaR - chr3R 21288025 intron SIFaR - chr3R_8_21285001 chr3R_21285001 RAL-712 1434 chr3R 21464403 21464424 chr3R 21464489 21464510 5 86 0.0 0.0 0.0 5.0 107 chr3R 21464403 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464510 intergenic not near genes chr3R_5_21460001 chr3R_21460001 RAL-712 1435 chr3R 21472015 21472034 chr3R 21472096 21472115 4 81 4.0 2.5 3.2 1.0 100 chr3R 21472015 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-712 1436 chr3R 21494687 21494718 chr3R 21494766 21494796 7 80 1.0 3.0 2.0 2.3 109 chr3R 21494687 intergenic not near genes chr3R 21494742 intergenic not near genes chr3R 21494796 intergenic not near genes chr3R_7_21490001 chr3R_21490001 RAL-712 1437 chr3R 21505226 21505249 chr3R 21505304 21505331 6 80 2.0 2.5 2.2 1.9 105 chr3R 21505226 intron C15 + chr3R 21505278 intron C15 + chr3R 21505331 intron C15 + chr3R_6_21505001 chr3R_21505001 RAL-712 1438 chr3R 21519988 21520134 chr3R 21520089 21520228 6 98 3.5 3.0 3.2 1.4 240 chr3R 21519988 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520228 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-712 1439 chr3R 21609013 21609040 chr3R 21611647 21611674 NOF 8 2633 1.5 4.0 2.8 2.1 2661 chr3R 21609013 intron InR - chr3R 21610344 intron InR - chr3R 21611674 intron InR - chr3R_8_21610001 chr3R_21610001 RAL-712 1440 chr3R 21631130 21631155 chr3R 21631531 21631560 8 404 1.5 1.0 1.2 3.6 430 chr3R 21631130 intron E2f - chr3R 21631345 intron E2f - chr3R 21631560 intron E2f - chr3R_8_21630001 chr3R_21630001 RAL-712 1441 chr3R 21633243 21633272 chr3R 21633489 21633518 6 246 3.0 2.0 2.5 1.7 275 chr3R 21633243 intron E2f - chr3R 21633380 intron E2f - chr3R 21633518 intron E2f - chr3R_6_21630001 chr3R_21630001 RAL-712 1442 chr3R 21644653 21644681 chr3R 21644836 21644864 9 183 1.0 5.5 3.2 2.1 211 chr3R 21644653 intron E2f - chr3R 21644758 intron E2f - chr3R 21644864 intron E2f - chr3R_9_21640001 chr3R_21640001 RAL-712 1443 chr3R 21761128 21761144 chr3R 21768520 21768536 mdg1 6 7392 5.0 3.5 4.2 1.2 7408 chr3R 21761128 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768536 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-712 1444 chr3R 21790961 21790990 chr3R 21791044 21791075 12 85 1.0 2.0 1.5 4.8 114 chr3R 21790961 intron CASK - chr3R 21791018 intron CASK - chr3R 21791075 intron CASK - chr3R_12_21790001 chr3R_21790001 RAL-712 1445 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 17.5 10.5 14.0 0.6 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-712 1446 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 4.0 10.5 7.2 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-712 1447 chr3R 21907534 21907534 chr3R 24389465 24389465 5 2481931 14.5 8.0 11.2 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-712 1448 chr3R 21907534 21907534 chr3R 28831798 28831803 26 6924268 14.5 14.0 14.2 1.7 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-712 1449 chr3R 8339246 8339247 chr3R 21907535 21907535 6 13568288 17.5 11.0 14.2 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-712 1450 chr3R 9620956 9620965 chr3R 21907535 21907535 8 12286578 13.5 11.0 12.2 0.6 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-712 1451 chr3R 21907535 21907535 chr3R 28831799 28831805 69 6924266 15.0 14.0 14.5 4.5 6924270 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_69_25365001 chr3R_25365001 RAL-712 1452 chr3R 8339246 8339247 chr3R 21907536 21907536 4 13568290 17.5 11.0 14.2 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-712 1453 chr3R 21907536 21907536 chr3R 28831801 28831802 72 6924266 14.5 14.5 14.5 4.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_72_25365001 chr3R_25365001 RAL-712 1454 chr3R 21924010 21924036 chr3R 21924099 21924126 6 89 6.5 1.5 4.0 1.2 116 chr3R 21924010 intergenic not near genes chr3R 21924068 intergenic not near genes chr3R 21924126 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-712 1455 chr3R 21952135 21952168 chr3R 21952220 21952253 5 85 1.5 2.5 2.0 1.7 118 chr3R 21952135 intron Eip93F + chr3R 21952194 intron Eip93F + chr3R 21952253 intron Eip93F + chr3R_5_21950001 chr3R_21950001 RAL-712 1456 chr3R 21958611 21958636 chr3R 21958700 21958726 6 90 1.0 0.5 0.8 3.3 115 chr3R 21958611 intron Eip93F + chr3R 21958668 intron Eip93F + chr3R 21958726 intron Eip93F + chr3R_6_21955001 chr3R_21955001 RAL-712 1457 chr3R 22117418 22117442 chr3R 22117494 22117518 8 76 0.5 1.0 0.8 4.4 100 chr3R 22117418 intergenic Ir94b -,Ir94c - chr3R 22117468 intergenic Ir94c -,Ir94b - chr3R 22117518 intergenic Ir94c -,Ir94b - chr3R_8_22115001 chr3R_22115001 RAL-712 1458 chr3R 22234685 22234715 chr3R 22236004 22236034 pogo 8 1319 1.5 2.0 1.8 2.9 1349 chr3R 22234685 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236034 intron SKIP + chr3R_8_22235001 chr3R_22235001 RAL-712 1459 chr3R 22239490 22239525 chr3R 22248550 22248585 roo 9 9060 1.0 2.5 1.8 3.2 9095 chr3R 22239490 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248585 intron SKIP + chr3R_9_22240001 chr3R_22240001 RAL-712 1460 chr3R 22292473 22292498 chr3R 22292552 22292578 9 80 4.0 2.5 3.2 2.1 105 chr3R 22292473 intron SKIP + chr3R 22292526 intron SKIP + chr3R 22292578 intron SKIP + chr3R_9_22290001 chr3R_22290001 RAL-712 1461 chr3R 22428576 22428605 chr3R 22428652 22428681 7 76 2.5 1.5 2.0 2.3 105 chr3R 22428576 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428681 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-712 1462 chr3R 22450541 22450575 chr3R 22453181 22453215 NOF 8 2639 1.5 2.5 2.0 2.7 2674 chr3R 22450541 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453215 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-712 1463 chr3R 22492390 22492415 chr3R 22492471 22492496 9 81 3.0 4.5 3.8 1.9 106 chr3R 22492390 intergenic CG7045 + chr3R 22492443 intergenic CG7045 + chr3R 22492496 intergenic CG7045 +,CG7046 + chr3R_9_22490001 chr3R_22490001 RAL-712 1464 chr3R 22538447 22538468 chr3R 22538532 22538553 11 85 2.0 2.5 2.2 3.4 106 chr3R 22538447 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538553 intron CG5326 - chr3R_11_22535001 chr3R_22535001 RAL-712 1465 chr3R 22646923 22646940 chr3R 22647011 22647027 4 88 3.5 0.0 1.8 1.4 104 chr3R 22646923 intron wake + chr3R 22646975 intron wake + chr3R 22647027 intron wake + chr3R_4_22645001 chr3R_22645001 RAL-712 1466 chr3R 22769090 22769125 chr3R 22769167 22769202 9 77 0.5 2.0 1.2 4.1 112 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-712 1467 chr3R 22794280 22794300 chr3R 22794506 22794526 4 226 1.0 3.0 2.0 1.3 246 chr3R 22794280 intergenic CG7029 + chr3R 22794403 intergenic CG7029 + chr3R 22794526 intergenic CG7029 + chr3R_4_22790001 chr3R_22790001 RAL-712 1468 chr3R 22797757 22797937 chr3R 22797843 22798033 9 88 0.0 0.0 0.0 9.0 276 chr3R 22797757 intergenic not near genes chr3R 22797895 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-712 1469 chr3R 22919155 22919182 chr3R 22919252 22919278 9 96 4.5 2.5 3.5 2.0 123 chr3R 22919155 intron klg + chr3R 22919216 intron klg + chr3R 22919278 intron klg + chr3R_9_22915001 chr3R_22915001 RAL-712 1470 chr3R 22927870 22927906 chr3R 22927965 22928001 8 95 2.5 2.5 2.5 2.3 131 chr3R 22927870 intron klg + chr3R 22927936 intron klg + chr3R 22928001 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-712 1471 chr3R 22990352 22990381 chr3R 22990607 22990636 6 255 2.5 4.5 3.5 1.3 284 chr3R 22990352 intron,exon Nha2 -,Or94b + chr3R 22990494 intron,intron Nha2 -,Or94b + chr3R 22990636 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-712 1472 chr3R 23016200 23016230 chr3R 23016275 23016307 9 76 3.0 1.5 2.2 2.8 107 chr3R 23016200 intergenic not near genes chr3R 23016254 intergenic not near genes chr3R 23016307 intergenic not near genes chr3R_9_23015001 chr3R_23015001 RAL-712 1473 chr3R 23180183 23180216 chr3R 23180266 23180299 9 83 0.5 2.5 1.5 3.6 116 chr3R 23180183 intron Irk1 + chr3R 23180241 intron Irk1 + chr3R 23180299 intron Irk1 + chr3R_9_23180001 chr3R_23180001 RAL-712 1474 chr3R 23277355 23277373 chr3R 23277445 23277463 9 90 0.0 1.5 0.8 5.0 108 chr3R 23277355 intron orb - chr3R 23277409 intron orb - chr3R 23277463 intron orb - chr3R_9_23275001 chr3R_23275001 RAL-712 1475 chr3R 23303630 23303658 chr3R 23303708 23303736 7 78 2.0 2.5 2.2 2.2 106 chr3R 23303630 intron pnt - chr3R 23303683 intron pnt - chr3R 23303736 intron pnt - chr3R_7_23300001 chr3R_23300001 RAL-712 1476 chr3R 23311678 23311710 chr3R 23311770 23311802 4 93 2.0 1.5 1.8 1.4 124 chr3R 23311678 intron pnt - chr3R 23311740 intron pnt - chr3R 23311802 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-712 1477 chr3R 23338900 23338914 chr3R 23338976 23338990 4 76 2.0 3.0 2.5 1.1 90 chr3R 23338900 intron pnt - chr3R 23338945 intron pnt - chr3R 23338990 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-712 1478 chr3R 23342634 23342670 chr3R 23342769 23342805 13 134 3.5 3.5 3.5 2.9 171 chr3R 23342634 intron pnt - chr3R 23342720 intron pnt - chr3R 23342805 intron pnt - chr3R_13_23340001 chr3R_23340001 RAL-712 1479 chr3R 23533534 23533544 chr3R 23533626 23533636 4 92 4.0 15.0 9.5 0.4 102 chr3R 23533534 exon CG10170 - chr3R 23533585 exon CG10170 - chr3R 23533636 exon CG10170 - chr3R_4_23530001 chr3R_23530001 RAL-712 1480 chr3R 23557872 23557893 chr3R 23557950 23557969 11 78 3.5 4.5 4.0 2.2 97 chr3R 23557872 5` UTR beat-IV + chr3R 23557920 intron beat-IV + chr3R 23557969 intron beat-IV + chr3R_11_23555001 chr3R_23555001 RAL-712 1481 chr3R 23558402 23558429 chr3R 23560183 23560210 Bari1 10 1781 0.5 2.0 1.2 4.5 1808 chr3R 23558402 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-712 1482 chr3R 23564446 23564470 chr3R 23564590 23564614 6 144 1.5 4.0 2.8 1.6 168 chr3R 23564446 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564614 intron beat-IV + chr3R_6_23560001 chr3R_23560001 RAL-712 1483 chr3R 23572753 23572778 chr3R 23572873 23572898 4 119 1.5 1.5 1.5 1.6 145 chr3R 23572753 intron beat-IV + chr3R 23572826 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_4_23570001 chr3R_23570001 RAL-712 1484 chr3R 23608573 23608606 chr3R 23608701 23608731 5 127 2.5 3.0 2.8 1.3 158 chr3R 23608573 intron CG31145 - chr3R 23608652 intron CG31145 - chr3R 23608731 exon CG31145 - chr3R_5_23605001 chr3R_23605001 RAL-712 1485 chr3R 23667918 23667932 chr3R 23675150 23675162 4 7232 15.5 15.0 15.2 0.2 7244 chr3R 23667918 intron CG31145 - chr3R 23671540 intergenic not near genes chr3R 23675162 intergenic not near genes chr3R_4_23670001 chr3R_23670001 RAL-712 1486 chr3R 23676051 23676076 chr3R 23676127 23676152 8 76 0.0 3.5 1.8 2.9 101 chr3R 23676051 intergenic not near genes chr3R 23676102 intergenic not near genes chr3R 23676152 intergenic not near genes chr3R_8_23675001 chr3R_23675001 RAL-712 1487 chr3R 23684694 23684729 chr3R 23685180 23685215 roo 14 485 1.0 3.5 2.2 4.4 521 chr3R 23684694 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685215 exon CG18754 + chr3R_14_23680001 chr3R_23680001 RAL-712 1488 chr3R 23688475 23688494 chr3R 23688566 23688584 7 90 4.5 3.5 4.0 1.4 109 chr3R 23688475 intergenic SPE + chr3R 23688530 intergenic SPE +,CG10254 - chr3R 23688584 intergenic CG10254 -,SPE + chr3R_7_23685001 chr3R_23685001 RAL-712 1489 chr3R 23714728 23714745 chr3R 23714822 23714839 5 94 2.5 3.5 3.0 1.2 111 chr3R 23714728 intron nau - chr3R 23714784 intron nau - chr3R 23714839 intron nau - chr3R_5_23710001 chr3R_23710001 RAL-712 1490 chr3R 23820641 23820663 chr3R 23820722 23820746 9 83 2.5 2.0 2.2 2.8 105 chr3R 23820641 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820746 5` UTR CG34355 + chr3R_9_23820001 chr3R_23820001 RAL-712 1491 chr3R 23835411 23835434 chr3R 23844561 23844584 roo 6 9150 1.5 2.5 2.0 2.0 9173 chr3R 23835411 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844584 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-712 1492 chr3R 23944913 23944927 chr3R 23944998 23945012 4 85 2.0 3.0 2.5 1.1 99 chr3R 23944913 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945012 intron CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-712 1493 chr3R 24025579 24025604 chr3R 24025658 24025683 7 77 1.0 3.5 2.2 2.2 104 chr3R 24025579 intron KrT95D - chr3R 24025631 intron KrT95D - chr3R 24025683 intron KrT95D - chr3R_7_24025001 chr3R_24025001 RAL-712 1494 chr3R 24072085 24072112 chr3R 24072523 24072550 jockey 11 438 5.0 2.5 3.8 2.3 465 chr3R 24072085 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072550 intron 4EHP - chr3R_11_24070001 chr3R_24070001 RAL-712 1495 chr3R 24080613 24080641 chr3R 24080709 24080740 8 99 2.5 3.0 2.8 2.1 127 chr3R 24080613 intron 4EHP - chr3R 24080676 intron 4EHP - chr3R 24080740 intron 4EHP - chr3R_8_24080001 chr3R_24080001 RAL-712 1496 chr3R 24100459 24100612 chr3R 24100554 24100836 10 172 2.0 2.5 2.2 3.1 377 chr3R 24100459 intron 4EHP - chr3R 24100648 intron 4EHP - chr3R 24100836 intron 4EHP - chr3R_10_24100001 chr3R_24100001 RAL-712 1497 chr3R 24207215 24207245 chr3R 24212291 24212321 flea 6 5076 4.0 4.5 4.2 1.2 5106 chr3R 24207215 intron twin - chr3R 24209768 intron twin - chr3R 24212321 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-712 1498 chr3R 21907534 21907535 chr3R 24389465 24389465 5 2481930 15.0 8.0 11.5 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-712 1499 chr3R 24431599 24431625 chr3R 24431678 24431704 7 79 3.0 1.5 2.2 2.2 105 chr3R 24431599 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431704 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-712 1500 chr3R 24433476 24433497 chr3R 24433555 24433576 6 79 1.5 2.0 1.8 2.1 100 chr3R 24433476 intron nAChRalpha1 - chr3R 24433526 intron nAChRalpha1 - chr3R 24433576 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-712 1501 chr3R 24493276 24493308 chr3R 24493505 24493537 BS 6 229 2.0 5.0 3.5 1.3 261 chr3R 24493276 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493537 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-712 1502 chr3R 24728342 24728360 chr3R 24728515 24728533 5 173 3.0 3.0 3.0 1.2 191 chr3R 24728342 intron tok + chr3R 24728438 intron tok + chr3R 24728533 intron tok + chr3R_5_24725001 chr3R_24725001 RAL-712 1503 chr3R 24893467 24893482 chr3R 24893547 24893562 4 80 4.5 0.0 2.2 1.2 95 chr3R 24893467 intron CG31121 - chr3R 24893514 intron CG31121 - chr3R 24893562 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-712 1504 chr3R 24912482 24912512 chr3R 24912564 24912594 4 82 2.5 2.0 2.2 1.2 112 chr3R 24912482 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912594 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-712 1505 chr3R 24927122 24927164 chr3R 24931913 24931955 Doc 13 4791 4.0 1.0 2.5 3.7 4833 chr3R 24927122 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931955 intergenic CG11771 + chr3R_13_24925001 chr3R_24925001 RAL-712 1506 chr3R 24974916 24974935 chr3R 24974995 24975013 5 78 3.5 5.5 4.5 0.9 97 chr3R 24974916 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975013 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-712 1507 chr3R 25178403 25178435 chr3R 25178491 25178522 10 87 3.0 3.0 3.0 2.5 119 chr3R 25178403 intron lobo - chr3R 25178462 intron lobo - chr3R 25178522 intron lobo - chr3R_10_25175001 chr3R_25175001 RAL-712 1508 chr3R 25192788 25192801 chr3R 25192920 25192932 5 131 1.5 0.5 1.0 2.5 144 chr3R 25192788 intron,3` UTR lobo -,dan + chr3R 25192860 intron lobo - chr3R 25192932 intron lobo - chr3R_5_25190001 chr3R_25190001 RAL-712 1509 chr3R 25277678 25277696 chr3R 25277775 25277793 4 97 1.0 4.0 2.5 1.1 115 chr3R 25277678 intergenic CG10513 - chr3R 25277736 intergenic not near genes chr3R 25277793 intergenic not near genes chr3R_4_25275001 chr3R_25275001 RAL-712 1510 chr3R 25302681 25302712 chr3R 25302930 25302961 9 249 1.5 6.0 3.8 1.9 280 chr3R 25302681 exon CG31370 + chr3R 25302821 exon CG31370 + chr3R 25302961 exon CG31370 + chr3R_9_25300001 chr3R_25300001 RAL-712 1511 chr3R 25328980 25329010 chr3R 25329459 25329489 8 479 1.5 0.5 1.0 4.0 509 chr3R 25328980 exon CHKov1 - chr3R 25329234 exon CHKov1 - chr3R 25329489 intergenic CHKov2 -,CHKov1 - chr3R_8_25325001 chr3R_25325001 RAL-712 1512 chr3R 25368474 25368504 chr3R 25368592 25368622 8 118 2.5 0.0 1.2 3.6 148 chr3R 25368474 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_8_25365001 chr3R_25365001 RAL-712 1513 chr3R 25377091 25377121 chr3R 25377355 25377387 10 266 4.0 3.0 3.5 2.2 296 chr3R 25377091 intron Fur1 - chr3R 25377239 intron Fur1 - chr3R 25377387 intron Fur1 - chr3R_10_25375001 chr3R_25375001 RAL-712 1514 chr3R 25411791 25411804 chr3R 25411894 25411907 4 102 0.0 2.5 1.2 1.8 116 chr3R 25411791 intron Fur1 - chr3R 25411849 intron Fur1 - chr3R 25411907 intron Fur1 - chr3R_4_25410001 chr3R_25410001 RAL-712 1515 chr3R 25422069 25422095 chr3R 25422150 25422176 5 81 2.0 0.0 1.0 2.5 107 chr3R 25422069 intron Fur1 - chr3R 25422122 intron Fur1 - chr3R 25422176 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-712 1516 chr3R 25464155 25464173 chr3R 25464363 25464381 5 208 2.0 3.0 2.5 1.4 226 chr3R 25464155 intron Fur1 - chr3R 25464268 intron Fur1 - chr3R 25464381 intron Fur1 - chr3R_5_25460001 chr3R_25460001 RAL-712 1517 chr3R 25604788 25604812 chr3R 25604880 25604904 5 92 1.5 4.0 2.8 1.3 116 chr3R 25604788 3` UTR,intron msi +,ymp - chr3R 25604846 3` UTR,intron msi +,ymp - chr3R 25604904 3` UTR,intron msi +,ymp - chr3R_5_25600001 chr3R_25600001 RAL-712 1518 chr3R 25637357 25637391 chr3R 25637531 25637567 7 176 1.5 1.0 1.2 3.2 210 chr3R 25637357 intergenic jigr1 + chr3R 25637462 intergenic jigr1 + chr3R 25637567 intergenic jigr1 + chr3R_7_25635001 chr3R_25635001 RAL-712 1519 chr3R 25669065 25669096 chr3R 25669159 25669190 7 94 0.0 2.0 1.0 3.5 125 chr3R 25669065 intron Lgr3 + chr3R 25669128 intron Lgr3 + chr3R 25669190 intron Lgr3 + chr3R_7_25665001 chr3R_25665001 RAL-712 1520 chr3R 25689129 25689161 chr3R 25689237 25689269 8 108 3.0 1.0 2.0 2.7 140 chr3R 25689129 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689269 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-712 1521 chr3R 25716376 25716410 chr3R 25716454 25716488 6 78 3.5 1.0 2.2 1.9 112 chr3R 25716376 intron LpR2 - chr3R 25716432 intron LpR2 - chr3R 25716488 intron LpR2 - chr3R_6_25715001 chr3R_25715001 RAL-712 1522 chr3R 25765875 25765912 chr3R 25765954 25765991 11 79 1.5 3.0 2.2 3.4 116 chr3R 25765875 intergenic not near genes chr3R 25765933 intergenic not near genes chr3R 25765991 intergenic not near genes chr3R_11_25765001 chr3R_25765001 RAL-712 1523 chr3R 25832698 25832712 chr3R 25841880 25841894 roo 5 9182 4.5 4.5 4.5 0.9 9196 chr3R 25832698 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841894 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-712 1524 chr3R 25843639 25843669 chr3R 25843769 25843799 6 130 1.0 2.5 1.8 2.1 160 chr3R 25843639 intergenic CR45653 + chr3R 25843719 intergenic CR45653 + chr3R 25843799 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-712 1525 chr3R 26015704 26015729 chr3R 26015791 26015816 4 87 3.0 3.0 3.0 1.0 112 chr3R 26015704 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015760 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015816 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R_4_26015001 chr3R_26015001 RAL-712 1526 chr3R 26093861 26093874 chr3R 26093939 26093952 9 78 1.0 5.0 3.0 2.2 91 chr3R 26093861 intron dys - chr3R 26093906 intron dys - chr3R 26093952 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-712 1527 chr3R 26104069 26104094 chr3R 26105148 26105173 7 1079 16.5 11.0 13.8 0.5 1104 chr3R 26104069 intergenic not near genes chr3R 26104621 intergenic not near genes chr3R 26105173 intergenic not near genes chr3R_7_26100001 chr3R_26100001 RAL-712 1528 chr3R 26121952 26121975 chr3R 26122048 26122072 9 97 0.0 5.5 2.8 2.4 120 chr3R 26121952 intron CG31324 + chr3R 26122012 intron CG31324 + chr3R 26122072 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-712 1529 chr3R 26166179 26166200 chr3R 26166265 26166286 8 86 1.5 1.0 1.2 3.6 107 chr3R 26166179 intergenic not near genes chr3R 26166232 intergenic not near genes chr3R 26166286 intergenic not near genes chr3R_8_26165001 chr3R_26165001 RAL-712 1530 chr3R 26265817 26265844 chr3R 26265905 26265932 9 88 4.5 2.5 3.5 2.0 115 chr3R 26265817 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265932 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-712 1531 chr3R 26292104 26292137 chr3R 26292184 26292217 6 80 1.0 3.5 2.2 1.9 113 chr3R 26292104 intergenic not near genes chr3R 26292160 intergenic not near genes chr3R 26292217 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-712 1532 chr3R 26314651 26314671 chr3R 26314796 26314815 5 145 3.5 2.5 3.0 1.2 164 chr3R 26314651 intergenic not near genes chr3R 26314733 intergenic not near genes chr3R 26314815 intergenic not near genes chr3R_5_26310001 chr3R_26310001 RAL-712 1533 chr3R 26320353 26320375 chr3R 26320540 26320561 4 187 1.5 1.5 1.5 1.6 208 chr3R 26320353 intron CG33970 + chr3R 26320457 intron CG33970 + chr3R 26320561 intron CG33970 + chr3R_4_26320001 chr3R_26320001 RAL-712 1534 chr3R 26325683 26325708 chr3R 26325771 26325796 11 88 4.0 2.5 3.2 2.6 113 chr3R 26325683 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325796 intron CG33970 + chr3R_11_26325001 chr3R_26325001 RAL-712 1535 chr3R 26376323 26376350 chr3R 26385483 26385510 roo 8 9159 2.5 0.0 1.2 3.6 9187 chr3R 26376323 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-712 1536 chr3R 26425888 26425905 chr3R 26425972 26425989 6 83 3.5 1.5 2.5 1.7 101 chr3R 26425888 intron CR31084 + chr3R 26425938 intron CR31084 + chr3R 26425989 intron CR31084 + chr3R_6_26425001 chr3R_26425001 RAL-712 1537 chr3R 26450520 26450549 chr3R 26450618 26450647 10 98 2.0 4.0 3.0 2.5 127 chr3R 26450520 exon Hex-t1 + chr3R 26450584 3` UTR Hex-t1 + chr3R 26450647 intergenic Hex-t2 +,Hex-t1 + chr3R_10_26450001 chr3R_26450001 RAL-712 1538 chr3R 26553211 26553229 chr3R 26553715 26553733 5 504 2.0 2.0 2.0 1.7 522 chr3R 26553211 intron scrib + chr3R 26553472 intron scrib + chr3R 26553733 intron scrib + chr3R_5_26550001 chr3R_26550001 RAL-712 1539 chr3R 26558328 26558349 chr3R 26565640 26565661 Stalker4 7 7312 2.0 2.5 2.2 2.2 7333 chr3R 26558328 intron scrib + chr3R 26561994 intron scrib + chr3R 26565661 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-712 1540 chr3R 26607741 26607765 chr3R 26607816 26607841 8 76 3.0 1.5 2.2 2.5 100 chr3R 26607741 5` UTR CR44951 + chr3R 26607791 5` UTR CR44951 + chr3R 26607841 5` UTR CR44951 + chr3R_8_26605001 chr3R_26605001 RAL-712 1541 chr3R 26641640 26641663 chr3R 26641726 26641750 5 87 1.0 3.5 2.2 1.6 110 chr3R 26641640 intergenic not near genes chr3R 26641695 intergenic not near genes chr3R 26641750 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-712 1542 chr3R 26642729 26642760 chr3R 26643121 26643154 jockey 6 394 0.5 3.5 2.0 2.0 425 chr3R 26642729 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-712 1543 chr3R 21907534 21907536 chr3R 26659336 26659337 5 4751801 14.5 17.0 15.8 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-712 1544 chr3R 26660645 26660677 chr3R 26660729 26660761 17 84 2.5 2.0 2.2 5.3 116 chr3R 26660645 intron beat-VII - chr3R 26660703 intron beat-VII - chr3R 26660761 intron beat-VII - chr3R_17_26660001 chr3R_26660001 RAL-712 1545 chr3R 26695566 26695594 chr3R 26695675 26695699 4 108 1.0 3.0 2.0 1.3 133 chr3R 26695566 intergenic not near genes chr3R 26695632 intergenic not near genes chr3R 26695699 intergenic not near genes chr3R_4_26695001 chr3R_26695001 RAL-712 1546 chr3R 26750923 26750950 chr3R 26751049 26751076 4 126 1.5 0.0 0.8 2.2 153 chr3R 26750923 intergenic not near genes chr3R 26751000 intergenic not near genes chr3R 26751076 intergenic not near genes chr3R_4_26750001 chr3R_26750001 RAL-712 1547 chr3R 26770245 26770272 chr3R 26770322 26770349 10 77 3.0 3.0 3.0 2.5 104 chr3R 26770245 intergenic CR45563 + chr3R 26770297 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_10_26770001 chr3R_26770001 RAL-712 1548 chr3R 26789601 26789623 chr3R 26789680 26789702 5 79 0.0 0.0 0.0 5.0 101 chr3R 26789601 intergenic not near genes chr3R 26789652 intergenic not near genes chr3R 26789702 intergenic not near genes chr3R_5_26785001 chr3R_26785001 RAL-712 1549 chr3R 26810552 26810586 chr3R 26811037 26811068 roo 4 484 1.0 3.0 2.0 1.3 516 chr3R 26810552 intron Tl + chr3R 26810810 intron Tl + chr3R 26811068 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-712 1550 chr3R 26854780 26854810 chr3R 26855287 26855314 7 507 3.5 1.0 2.2 2.2 534 chr3R 26854780 intron Lerp - chr3R 26855047 intron Lerp - chr3R 26855314 intron Lerp - chr3R_7_26855001 chr3R_26855001 RAL-712 1551 chr3R 26857881 26857908 chr3R 26857969 26857996 7 88 1.0 0.0 0.5 4.7 115 chr3R 26857881 intron Lerp - chr3R 26857938 intron Lerp - chr3R 26857996 intron Lerp - chr3R_7_26855001 chr3R_26855001 RAL-712 1552 chr3R 27007419 27007437 chr3R 27016554 27016569 roo 4 9134 0.0 3.5 1.8 1.4 9150 chr3R 27007419 intron RYa-R + chr3R 27011994 intron RYa-R + chr3R 27016569 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-712 1553 chr3R 27140514 27140547 chr3R 27148124 27148157 412 12 7610 4.5 2.0 3.2 2.9 7643 chr3R 27140514 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-712 1554 chr3R 27241402 27241426 chr3R 27244702 27244726 8 3300 26.0 25.0 25.5 0.3 3324 chr3R 27241402 exon CG17991 + chr3R 27243064 exon CG18766 - chr3R 27244726 intron CG18766 - chr3R_8_27240001 chr3R_27240001 RAL-712 1555 chr3R 27245596 27245610 chr3R 27245682 27245701 6 90 5.0 2.5 3.8 1.2 105 chr3R 27245596 intergenic CG18766 - chr3R 27245648 intergenic CG18766 - chr3R 27245701 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-712 1556 chr3R 27315992 27316012 chr3R 27316068 27316088 8 76 3.5 3.0 3.2 1.9 96 chr3R 27315992 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316088 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-712 1557 chr3R 27329479 27329496 chr3R 27329556 27329573 5 77 3.0 2.0 2.5 1.4 94 chr3R 27329479 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329573 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-712 1558 chr3R 27342795 27342820 chr3R 27351376 27351400 Tirant 5 8581 3.5 3.0 3.2 1.2 8605 chr3R 27342795 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-712 1559 chr3R 27393675 27393702 chr3R 27393957 27393984 6 282 1.5 3.5 2.5 1.7 309 chr3R 27393675 intron side - chr3R 27393830 intron side - chr3R 27393984 intron side - chr3R_6_27390001 chr3R_27390001 RAL-712 1560 chr3R 27457864 27457894 chr3R 27457956 27457986 9 92 2.0 0.0 1.0 4.5 122 chr3R 27457864 intergenic not near genes chr3R 27457925 intergenic not near genes chr3R 27457986 intergenic not near genes chr3R_9_27455001 chr3R_27455001 RAL-712 1561 chr3R 27492386 27492408 chr3R 27492473 27492495 9 87 1.0 2.0 1.5 3.6 109 chr3R 27492386 intergenic not near genes chr3R 27492440 intergenic not near genes chr3R 27492495 intergenic not near genes chr3R_9_27490001 chr3R_27490001 RAL-712 1562 chr3R 27595056 27595084 chr3R 27595139 27595167 8 83 1.0 2.0 1.5 3.2 111 chr3R 27595056 intron CG5639 - chr3R 27595112 intron CG5639 - chr3R 27595167 intron CG5639 - chr3R_8_27595001 chr3R_27595001 RAL-712 1563 chr3R 27619709 27619731 chr3R 27619824 27619845 9 115 2.0 3.0 2.5 2.6 136 chr3R 27619709 intron Tusp + chr3R 27619777 intron Tusp + chr3R 27619845 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-712 1564 chr3R 27627086 27627120 chr3R 27627188 27627222 7 101 2.5 0.5 1.5 2.8 136 chr3R 27627086 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627222 intron Tusp + chr3R_7_27625001 chr3R_27625001 RAL-712 1565 chr3R 27706776 27706803 chr3R 27706853 27706880 8 77 1.5 1.0 1.2 3.6 104 chr3R 27706776 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706880 intergenic CG12428 -,CG12877 + chr3R_8_27705001 chr3R_27705001 RAL-712 1566 chr3R 27799947 27799960 chr3R 27800029 27800042 5 82 3.0 4.5 3.8 1.0 95 chr3R 27799947 intron CG34353 - chr3R 27799994 intron CG34353 - chr3R 27800042 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-712 1567 chr3R 27856758 27856790 chr3R 27858241 27858272 hopper2 10 1483 3.5 3.0 3.2 2.4 1514 chr3R 27856758 intron CG34353 - chr3R 27857515 intron CG34353 - chr3R 27858272 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-712 1568 chr3R 27862953 27862985 chr3R 27868258 27868290 Transpac 11 5305 2.5 1.5 2.0 3.7 5337 chr3R 27862953 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868290 intron CG34353 - chr3R_11_27865001 chr3R_27865001 RAL-712 1569 chr3R 27875699 27875722 chr3R 27882754 27882775 297 6 7054 4.5 1.5 3.0 1.5 7076 chr3R 27875699 intron CG34353 - chr3R 27879237 intron CG34353 - chr3R 27882775 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-712 1570 chr3R 27900356 27900368 chr3R 27900438 27900449 7 82 0.0 5.5 2.8 1.8 93 chr3R 27900356 intron CG34353 - chr3R 27900402 intron CG34353 - chr3R 27900449 intron CG34353 - chr3R_7_27900001 chr3R_27900001 RAL-712 1571 chr3R 28035489 28035505 chr3R 28035566 28035582 7 77 1.0 0.0 0.5 4.7 93 chr3R 28035489 intron CG34362 + chr3R 28035536 intron CG34362 + chr3R 28035582 intron CG34362 + chr3R_7_28035001 chr3R_28035001 RAL-712 1572 chr3R 28068499 28068525 chr3R 28073941 28073967 I-element 7 5442 1.0 3.5 2.2 2.2 5468 chr3R 28068499 intron CG34362 + chr3R 28071233 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-712 1573 chr3R 28102585 28102593 chr3R 28102823 28102831 6 238 2.0 6.5 4.2 1.2 246 chr3R 28102585 intergenic not near genes chr3R 28102708 intergenic not near genes chr3R 28102831 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-712 1574 chr3R 28103323 28103356 chr3R 28103416 28103449 8 93 2.0 1.0 1.5 3.2 126 chr3R 28103323 intergenic not near genes chr3R 28103386 intergenic not near genes chr3R 28103449 intergenic not near genes chr3R_8_28100001 chr3R_28100001 RAL-712 1575 chr3R 28118568 28118867 chr3R 28118700 28118948 14 106 3.0 2.0 2.5 4.0 380 chr3R 28118568 intergenic not near genes chr3R 28118758 intergenic not near genes chr3R 28118948 intergenic not near genes chr3R_14_28115001 chr3R_28115001 RAL-712 1576 chr3R 28130069 28130099 chr3R 28130183 28130213 8 114 3.5 1.0 2.2 2.5 144 chr3R 28130069 intergenic not near genes chr3R 28130141 intergenic not near genes chr3R 28130213 intergenic not near genes chr3R_8_28130001 chr3R_28130001 RAL-712 1577 chr3R 28169845 28169876 chr3R 28170031 28170062 9 186 0.0 0.5 0.2 7.5 217 chr3R 28169845 intron CG34354 + chr3R 28169954 intron CG34354 + chr3R 28170062 intron CG34354 + chr3R_9_28165001 chr3R_28165001 RAL-712 1578 chr3R 28201830 28201847 chr3R 28201928 28201944 6 98 2.5 2.5 2.5 1.7 114 chr3R 28201830 intron CG34354 + chr3R 28201887 intron CG34354 + chr3R 28201944 intron CG34354 + chr3R_6_28200001 chr3R_28200001 RAL-712 1579 chr3R 28223906 28223935 chr3R 28224362 28224391 5 456 2.5 1.5 2.0 1.7 485 chr3R 28223906 intron CG34354 + chr3R 28224148 intron CG34354 + chr3R 28224391 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-712 1580 chr3R 28233780 28233795 chr3R 28234015 28234031 5 236 2.5 3.5 3.0 1.2 251 chr3R 28233780 intron CG34354 + chr3R 28233906 intron CG34354 + chr3R 28234031 intron CG34354 + chr3R_5_28230001 chr3R_28230001 RAL-712 1581 chr3R 28253350 28253371 chr3R 28255860 28255881 jockey 8 2510 2.0 3.0 2.5 2.3 2531 chr3R 28253350 intergenic not near genes chr3R 28254616 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-712 1582 chr3R 28282987 28283018 chr3R 28283615 28283647 17 629 4.5 3.0 3.8 3.5 660 chr3R 28282987 exon CG34436 + chr3R 28283317 exon CG34436 + chr3R 28283647 intergenic CG34437 +,CG34436 + chr3R_17_28280001 chr3R_28280001 RAL-712 1583 chr3R 28302099 28302132 chr3R 28302538 28302569 jockey 11 439 1.5 3.5 2.5 3.1 470 chr3R 28302099 intergenic not near genes chr3R 28302334 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_11_28300001 chr3R_28300001 RAL-712 1584 chr3R 28425194 28425219 chr3R 28425270 28425296 8 78 2.5 2.0 2.2 2.5 102 chr3R 28425194 intron beat-VI + chr3R 28425245 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_8_28425001 chr3R_28425001 RAL-712 1585 chr3R 28626231 28626250 chr3R 28626329 28626348 5 98 2.5 5.0 3.8 1.0 117 chr3R 28626231 intron CG10011 - chr3R 28626290 intron CG10011 - chr3R 28626348 intron CG10011 - chr3R_5_28625001 chr3R_28625001 RAL-712 1586 chr3R 28745591 28745618 chr3R 28745677 28745704 9 84 2.5 0.5 1.5 3.6 113 chr3R 28745591 intergenic not near genes chr3R 28745648 intergenic not near genes chr3R 28745704 intergenic not near genes chr3R_9_28745001 chr3R_28745001 RAL-712 1587 chr3R 28792880 28792891 chr3R 28797975 28797986 jockey 4 5095 2.0 1.5 1.8 1.4 5106 chr3R 28792880 intergenic not near genes chr3R 28795433 intergenic not near genes chr3R 28797986 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-712 1588 chr3R 28827687 28827711 chr3R 28827842 28827867 10 156 3.0 1.5 2.2 3.1 180 chr3R 28827687 intron WASp - chr3R 28827777 intron WASp - chr3R 28827867 intron WASp - chr3R_10_28825001 chr3R_28825001 RAL-712 1589 chr3R 21907534 21907535 chr3R 28831798 28831804 132 6924266 15.0 14.0 14.5 8.5 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_132_25365001 chr3R_25365001 RAL-712 1590 chr3R 28845984 28846003 chr3R 28846074 28846091 5 90 0.5 0.5 0.5 3.3 107 chr3R 28845984 exon spg + chr3R 28846038 intron spg + chr3R 28846091 intron spg + chr3R_5_28845001 chr3R_28845001 RAL-712 1591 chr3R 28960507 28960543 chr3R 28960592 28960628 6 85 0.5 2.5 1.5 2.4 121 chr3R 28960507 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960628 intron CG14521 - chr3R_6_28960001 chr3R_28960001 RAL-712 1592 chr3R 29009954 29009986 chr3R 29010060 29010092 14 106 2.5 1.5 2.0 4.7 138 chr3R 29009954 intron wat - chr3R 29010023 intron wat - chr3R 29010092 intron wat - chr3R_14_29010001 chr3R_29010001 RAL-712 1593 chr3R 21907534 21907536 chr3R 29013340 29013340 17 7105805 14.5 11.5 13.0 1.2 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_17_25460001 chr3R_25460001 RAL-712 1594 chr3R 29017129 29017147 chr3R 29017223 29017241 9 94 1.5 1.5 1.5 3.6 112 chr3R 29017129 intron wat - chr3R 29017185 intron wat - chr3R 29017241 intron wat - chr3R_9_29015001 chr3R_29015001 RAL-712 1595 chr3R 29067612 29067637 chr3R 29067757 29067785 6 147 1.0 0.0 0.5 4.0 173 chr3R 29067612 intron CG11873 + chr3R 29067698 intron CG11873 + chr3R 29067785 intron CG11873 + chr3R_6_29065001 chr3R_29065001 RAL-712 1596 chr3R 29079381 29079407 chr3R 29080753 29080779 NOF 7 1372 3.0 6.0 4.5 1.3 1398 chr3R 29079381 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080779 intron CG11873 + chr3R_7_29080001 chr3R_29080001 RAL-712 1597 chr3R 29213059 29213085 chr3R 29213142 29213168 8 83 4.5 4.5 4.5 1.5 109 chr3R 29213059 intergenic not near genes chr3R 29213114 intergenic not near genes chr3R 29213168 intergenic not near genes chr3R_8_29210001 chr3R_29210001 RAL-712 1598 chr3R 29237253 29237281 chr3R 29239274 29239302 5 2021 20.0 4.5 12.2 0.4 2049 chr3R 29237253 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-712 1599 chr3R 29319835 29319856 chr3R 29320154 29320175 jockey 8 318 1.5 3.5 2.5 2.3 340 chr3R 29319835 intergenic Cnx99A - chr3R 29320005 intergenic Cnx99A - chr3R 29320175 intergenic not near genes chr3R_8_29320001 chr3R_29320001 RAL-712 1600 chr3R 29329174 29329195 chr3R 29329517 29329538 7 343 1.5 3.5 2.5 2.0 364 chr3R 29329174 intergenic not near genes chr3R 29329356 intergenic not near genes chr3R 29329538 intergenic not near genes chr3R_7_29325001 chr3R_29325001 RAL-712 1601 chr3R 29340588 29340610 chr3R 29340665 29340687 5 77 2.0 3.5 2.8 1.3 99 chr3R 29340588 intergenic not near genes chr3R 29340638 intergenic not near genes chr3R 29340687 intergenic not near genes chr3R_5_29340001 chr3R_29340001 RAL-712 1602 chr3R 29384852 29384876 chr3R 29384976 29384995 9 123 1.0 6.0 3.5 2.0 143 chr3R 29384852 intron Ptp99A + chr3R 29384924 intron Ptp99A + chr3R 29384995 intron Ptp99A + chr3R_9_29380001 chr3R_29380001 RAL-712 1603 chr3R 29406617 29406641 chr3R 29407903 29407926 jockey 8 1286 4.5 5.0 4.8 1.4 1309 chr3R 29406617 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-712 1604 chr3R 29472012 29472037 chr3R 29472105 29472127 5 92 1.5 4.0 2.8 1.3 115 chr3R 29472012 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-712 1605 chr3R 29505915 29505925 chr3R 29505992 29506002 5 77 0.5 6.0 3.2 1.2 87 chr3R 29505915 intergenic not near genes chr3R 29505958 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-712 1606 chr3R 29539435 29539454 chr3R 29539508 29539530 6 76 1.5 0.0 0.8 3.3 95 chr3R 29539435 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539530 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-712 1607 chr3R 29590381 29590403 chr3R 29590474 29590496 12 93 2.0 7.5 4.8 2.1 115 chr3R 29590381 intron CG31041 - chr3R 29590438 intron CG31041 - chr3R 29590496 intron CG31041 - chr3R_12_29590001 chr3R_29590001 RAL-712 1608 chr3R 29592750 29592763 chr3R 29592828 29592841 6 78 1.0 2.0 1.5 2.4 91 chr3R 29592750 intron alph + chr3R 29592796 intron alph + chr3R 29592841 intron alph + chr3R_6_29590001 chr3R_29590001 RAL-712 1609 chr3R 29615088 29615108 chr3R 29615169 29615190 5 81 1.5 1.0 1.2 2.3 102 chr3R 29615088 intron alph + chr3R 29615139 intron alph + chr3R 29615190 intron alph + chr3R_5_29615001 chr3R_29615001 RAL-712 1610 chr3R 29627564 29627594 chr3R 29627655 29627685 14 91 2.0 2.5 2.2 4.4 121 chr3R 29627564 intergenic not near genes chr3R 29627624 intergenic not near genes chr3R 29627685 intergenic not near genes chr3R_14_29625001 chr3R_29625001 RAL-712 1611 chr3R 29738268 29738301 chr3R 29739735 29739768 hobo 4 1467 1.5 4.0 2.8 1.1 1500 chr3R 29738268 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739768 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-712 1612 chr3R 29760376 29760393 chr3R 29761574 29761594 pogo 4 1200 3.5 1.5 2.5 1.1 1218 chr3R 29760376 intergenic not near genes chr3R 29760985 intergenic not near genes chr3R 29761594 intergenic not near genes chr3R_4_29760001 chr3R_29760001 RAL-712 1613 chr3R 29769682 29769699 chr3R 29769764 29769781 6 82 5.5 2.0 3.8 1.2 99 chr3R 29769682 intron kay + chr3R 29769732 intron kay + chr3R 29769781 intron kay + chr3R_6_29765001 chr3R_29765001 RAL-712 1614 chr3R 29880583 29880618 chr3R 29880668 29880702 9 85 3.0 0.5 1.8 3.2 119 chr3R 29880583 intron CG31038 + chr3R 29880642 intron CG31038 + chr3R 29880702 intron CG31038 + chr3R_9_29880001 chr3R_29880001 RAL-712 1615 chr3R 29882031 29882050 chr3R 29891188 29891207 roo 6 9157 1.5 5.0 3.2 1.4 9176 chr3R 29882031 intron CG31038 + chr3R 29886619 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-712 1616 chr3R 29950578 29950598 chr3R 29950654 29950675 7 77 1.5 1.0 1.2 3.2 97 chr3R 29950578 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950675 intergenic TkR99D - chr3R_7_29950001 chr3R_29950001 RAL-712 1617 chr3R 29963477 29963511 chr3R 29963579 29963612 12 102 0.0 5.0 2.5 3.4 135 chr3R 29963477 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_12_29960001 chr3R_29960001 RAL-712 1618 chr3R 29966059 29966074 chr3R 29966144 29966157 4 84 2.5 2.5 2.5 1.1 98 chr3R 29966059 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966157 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-712 1619 chr3R 30013679 30013708 chr3R 30013760 30013791 10 82 1.5 2.0 1.8 3.6 112 chr3R 30013679 intron CG7920 - chr3R 30013735 intron CG7920 - chr3R 30013791 intron CG7920 - chr3R_10_30010001 chr3R_30010001 RAL-712 1620 chr3R 30074497 30074534 chr3R 30075003 30075040 7 506 2.0 2.5 2.2 2.2 543 chr3R 30074497 intron sima + chr3R 30074768 intron sima + chr3R 30075040 intron sima + chr3R_7_30070001 chr3R_30070001 RAL-712 1621 chr3R 30084848 30084881 chr3R 30086315 30086348 hobo 10 1467 0.0 5.5 2.8 2.6 1500 chr3R 30084848 intron sima + chr3R 30085598 intron sima + chr3R 30086348 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-712 1622 chr3R 30124960 30124979 chr3R 30125036 30125054 4 76 2.0 0.5 1.2 1.8 94 chr3R 30124960 intergenic CG45073 - chr3R 30125007 intergenic CG45073 - chr3R 30125054 intergenic CG45073 - chr3R_4_30125001 chr3R_30125001 RAL-712 1623 chr3R 30136963 30136967 chr3R 30137042 30137046 4 79 2.0 4.0 3.0 1.0 83 chr3R 30136963 exon AdoR - chr3R 30137004 intron AdoR - chr3R 30137046 intron AdoR - chr3R_4_30135001 chr3R_30135001 RAL-712 1624 chr3R 30182756 30182787 chr3R 30182895 30182926 10 139 1.0 2.5 1.8 3.6 170 chr3R 30182756 intergenic not near genes chr3R 30182841 intergenic not near genes chr3R 30182926 intergenic not near genes chr3R_10_30180001 chr3R_30180001 RAL-712 1625 chr3R 30238760 30238796 chr3R 30239924 30239960 1360 9 1164 2.0 1.5 1.8 3.2 1200 chr3R 30238760 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239960 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-712 1626 chr3R 30262574 30262606 chr3R 30262671 30262703 6 97 2.5 1.0 1.8 2.1 129 chr3R 30262574 intergenic not near genes chr3R 30262638 intergenic not near genes chr3R 30262703 intergenic not near genes chr3R_6_30260001 chr3R_30260001 RAL-712 1627 chr3R 30330496 30330523 chr3R 30330576 30330603 9 80 2.0 1.5 1.8 3.2 107 chr3R 30330496 intron hdc + chr3R 30330550 intron hdc + chr3R 30330603 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-712 1628 chr3R 30364843 30364864 chr3R 30365016 30365037 15 173 3.0 2.5 2.8 3.9 194 chr3R 30364843 3` UTR hdc + chr3R 30364940 3` UTR hdc + chr3R 30365037 3` UTR hdc + chr3R_15_30360001 chr3R_30360001 RAL-712 1629 chr3R 30396218 30396242 chr3R 30404484 30404508 roo 6 8266 1.5 3.0 2.2 1.9 8290 chr3R 30396218 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404508 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-712 1630 chr3R 23457301 23457322 chr3R 30410916 30410935 6 6953613 19.0 8.5 13.8 0.4 6953634 chr3R 23457301 intron CG4374 - chr3R 26934118 intron sda + chr3R 30410935 intergenic not near genes chr3R_6_26930001 chr3R_26930001 RAL-712 1631 chr3R 30440690 30440716 chr3R 30440949 30440972 8 259 3.5 2.5 3.0 2.0 282 chr3R 30440690 intron CG15537 - chr3R 30440831 intron CG15537 - chr3R 30440972 intron CG15537 - chr3R_8_30440001 chr3R_30440001 RAL-712 1632 chr3R 30456393 30456422 chr3R 30456473 30456502 11 80 1.0 3.5 2.2 3.4 109 chr3R 30456393 intergenic CG2224 - chr3R 30456448 3` UTR CG2224 - chr3R 30456502 3` UTR CG2224 - chr3R_11_30455001 chr3R_30455001 RAL-712 1633 chr3R 30458012 30458045 chr3R 30458092 30458125 9 80 0.5 1.5 1.0 4.5 113 chr3R 30458012 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458125 intron CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-712 1634 chr3R 30471899 30471934 chr3R 30471975 30472008 6 76 0.5 1.0 0.8 3.3 109 chr3R 30471899 intron PH4alphaEFB + chr3R 30471954 intron PH4alphaEFB + chr3R 30472008 intron PH4alphaEFB + chr3R_6_30470001 chr3R_30470001 RAL-712 1635 chr3R 30480477 30480512 chr3R 30482945 30482980 jockey 12 2468 0.5 2.5 1.5 4.8 2503 chr3R 30480477 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482980 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-712 1636 chr3R 30495174 30495193 chr3R 30495292 30495313 6 119 1.5 1.0 1.2 2.7 139 chr3R 30495174 intron PH4alphaMP - chr3R 30495244 intron PH4alphaMP - chr3R 30495313 intron PH4alphaMP - chr3R_6_30495001 chr3R_30495001 RAL-712 1637 chr3R 30544659 30544685 chr3R 30544739 30544765 9 79 1.5 0.5 1.0 4.5 106 chr3R 30544659 intron tmod + chr3R 30544712 intron tmod + chr3R 30544765 intron tmod + chr3R_9_30540001 chr3R_30540001 RAL-712 1638 chr3R 30551276 30551298 chr3R 30551358 30551382 10 84 1.0 0.5 0.8 5.6 106 chr3R 30551276 intron tmod + chr3R 30551329 intron tmod + chr3R 30551382 intron tmod + chr3R_10_30550001 chr3R_30550001 RAL-712 1639 chr3R 30592506 30592539 chr3R 30592616 30592649 9 110 1.5 4.5 3.0 2.2 143 chr3R 30592506 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592649 intergenic CG2246 - chr3R_9_30590001 chr3R_30590001 RAL-712 1640 chr3R 30627607 30627636 chr3R 30627687 30627716 5 80 3.5 4.5 4.0 1.0 109 chr3R 30627607 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-712 1641 chr3R 30690160 30690192 chr3R 30690244 30690276 14 83 2.0 2.0 2.0 4.7 116 chr3R 30690160 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_14_30690001 chr3R_30690001 RAL-712 1642 chr3R 30859408 30859427 chr3R 30859486 30859505 4 78 1.5 0.5 1.0 2.0 97 chr3R 30859408 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859505 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-712 1643 chr3R 30900536 30900561 chr3R 30901671 30901696 8 1135 6.0 1.5 3.8 1.7 1160 chr3R 30900536 3` UTR Cyp4c3 + chr3R 30901116 intron CG33483 - chr3R 30901696 intron CG33483 - chr3R_8_30900001 chr3R_30900001 RAL-712 1644 chr3R 31042114 31042133 chr3R 31042201 31042220 9 87 3.5 3.5 3.5 2.0 106 chr3R 31042114 intron CanA1 + chr3R 31042167 intron CanA1 + chr3R 31042220 intron CanA1 + chr3R_9_31040001 chr3R_31040001 RAL-712 1645 chr3R 31067027 31067054 chr3R 31067153 31067181 12 127 1.5 2.0 1.8 4.3 154 chr3R 31067027 intron Sox100B + chr3R 31067104 intron Sox100B + chr3R 31067181 intron Sox100B + chr3R_12_31065001 chr3R_31065001 RAL-712 1646 chr3R 31146752 31146783 chr3R 31146830 31146861 11 78 1.0 1.5 1.2 5.0 109 chr3R 31146752 intron Gycbeta100B + chr3R 31146806 intron Gycbeta100B + chr3R 31146861 intron Gycbeta100B + chr3R_11_31145001 chr3R_31145001 RAL-712 1647 chr3R 31274364 31274394 chr3R 31274441 31274472 8 78 2.5 3.5 3.0 2.0 108 chr3R 31274364 intergenic not near genes chr3R 31274418 intergenic not near genes chr3R 31274472 intergenic not near genes chr3R_8_31270001 chr3R_31270001 RAL-712 1648 chr3R 31279388 31279407 chr3R 31285579 31285598 diver 5 6191 4.0 4.5 4.2 1.0 6210 chr3R 31279388 intergenic not near genes chr3R 31282493 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-712 1649 chr3R 31348056 31348072 chr3R 31348133 31348149 7 77 3.5 1.0 2.2 2.2 93 chr3R 31348056 intron CG34347 + chr3R 31348102 intron CG34347 + chr3R 31348149 intron CG34347 + chr3R_7_31345001 chr3R_31345001 RAL-712 1650 chr3R 31412709 31412735 chr3R 31412801 31412827 4 92 1.5 3.5 2.5 1.1 118 chr3R 31412709 intron Gprk2 + chr3R 31412768 intron Gprk2 + chr3R 31412827 intron Gprk2 + chr3R_4_31410001 chr3R_31410001 RAL-712 1651 chr3R 31413089 31413117 chr3R 31418289 31418317 copia 11 5199 4.0 0.0 2.0 3.7 5228 chr3R 31413089 intron Gprk2 + chr3R 31415703 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-712 1652 chr3R 31426883 31426898 chr3R 31426975 31426989 4 92 3.0 2.0 2.5 1.1 106 chr3R 31426883 intron Gprk2 + chr3R 31426936 intron Gprk2 + chr3R 31426989 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-712 1653 chr3R 31435372 31435391 chr3R 31435523 31435543 8 152 3.5 4.0 3.8 1.7 171 chr3R 31435372 intron Gprk2 + chr3R 31435458 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-712 1654 chr3R 31606145 31606170 chr3R 31606307 31606331 6 162 0.0 0.5 0.2 5.0 186 chr3R 31606145 intron CycG - chr3R 31606238 intron CycG - chr3R 31606331 intron CycG - chr3R_6_31605001 chr3R_31605001 RAL-712 1655 chr3R 31691540 31691560 chr3R 31696296 31696326 Doc 5 4763 3.0 3.5 3.2 1.2 4786 chr3R 31691540 intergenic not near genes chr3R 31693933 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-712 1656 chr3R 31774871 31774896 chr3R 31775015 31775041 7 145 2.5 1.0 1.8 2.5 170 chr3R 31774871 3` UTR sip3 + chr3R 31774956 3` UTR sip3 + chr3R 31775041 3` UTR sip3 + chr3R_7_31770001 chr3R_31770001 RAL-712 1657 chr3R 31860275 31860285 chr3R 31860352 31860365 5 79 4.5 2.0 3.2 1.2 90 chr3R 31860275 intron heph - chr3R 31860320 intron heph - chr3R 31860365 intron heph - chr3R_5_31860001 chr3R_31860001 RAL-712 1658 chr3R 31915482 31915506 chr3R 31915589 31915613 7 107 2.5 0.0 1.2 3.2 131 chr3R 31915482 intron heph - chr3R 31915548 intron heph - chr3R 31915613 intron heph - chr3R_7_31915001 chr3R_31915001 RAL-712 1659 chr3R 31998005 31998025 chr3R 32005474 32005490 blood 5 7469 1.5 5.0 3.2 1.2 7485 chr3R 31998005 intron heph - chr3R 32001748 intron heph - chr3R 32005490 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-712 1660 chr4 61372 61392 chr4 61584 61602 4 212 2.5 1.0 1.8 1.4 230 chr4 61372 intron CR43957 + chr4 61487 intron CR43957 + chr4 61602 intron CR43957 + chr4_4_60001 chr4_60001 RAL-712 1661 chr4 76492 76518 chr4 81935 81961 I-element 4 5443 0.5 2.5 1.5 1.6 5469 chr4 76492 intron pan + chr4 79226 intron pan + chr4 81961 intron pan + chr4_4_75001 chr4_75001 RAL-712 1662 chr4 671606 671634 chr4 680187 680217 Tirant 8 8583 2.0 2.5 2.2 2.5 8611 chr4 671606 intron CG11360 + chr4 675912 intron CG11360 + chr4 680217 intron CG11360 + chr4_8_675001 chr4_675001 RAL-712 1663 chr4 1096320 1096349 chr4 1096498 1096524 4 177 2.0 0.5 1.2 1.8 204 chr4 1096320 intron sv + chr4 1096422 intron sv + chr4 1096524 intron sv + chr4_4_1095001 chr4_1095001 RAL-712 1664 chrX 295860 295877 chrX 303480 303495 412 4 7619 2.0 3.0 2.5 1.1 7635 chrX 295860 intron CG3777 + chrX 299678 intron CG3777 + chrX 303495 intron CG3777 + chrX_4_295001 chrX_295001 RAL-712 1665 chrX 388260 388272 chrX 390607 390619 4 2347 11.0 13.5 12.2 0.3 2359 chrX 388260 intron CG32816 - chrX 389440 intron CG32816 - chrX 390619 intron CG32816 - chrX_4_385001 chrX_385001 RAL-712 1666 chrX 428419 428438 chrX 434604 434622 3S18 4 6184 3.0 2.0 2.5 1.1 6203 chrX 428419 intron CG32816 - chrX 431520 intron CG32816 - chrX 434622 intron CG32816 - chrX_4_430001 chrX_430001 RAL-712 1667 chrX 494605 494625 chrX 494697 494717 4 92 1.5 3.0 2.2 1.2 112 chrX 494605 intergenic CG17778 + chrX 494661 5` UTR CG17778 + chrX 494717 intron CG17778 + chrX_4_490001 chrX_490001 RAL-712 1668 chrX 551421 551429 chrX 558983 558989 412 4 7561 2.5 2.0 2.2 1.2 7568 chrX 551421 intron Appl + chrX 555205 intron Appl + chrX 558989 intron Appl + chrX_4_555001 chrX_555001 RAL-712 1669 chrX 714271 714282 chrX 714404 714415 6 133 5.5 1.5 3.5 1.3 144 chrX 714271 intron sdk + chrX 714343 intron sdk + chrX 714415 intron sdk + chrX_6_710001 chrX_710001 RAL-712 1670 chrX 802287 802315 chrX 802364 802392 9 77 1.0 2.0 1.5 3.6 105 chrX 802287 exon CG13359 - chrX 802340 exon CG13359 - chrX 802392 exon CG13359 - chrX_9_800001 chrX_800001 RAL-712 1671 chrX 812266 812290 chrX 817897 817921 297 6 5631 2.0 2.5 2.2 1.9 5655 chrX 812266 intron CG43867 - chrX 815094 intron CG43867 - chrX 817921 intron CG43867 - chrX_6_815001 chrX_815001 RAL-712 1672 chrX 827601 827619 chrX 835391 835410 roo 4 7791 5.5 1.5 3.5 0.9 7809 chrX 827601 intron CG43867 - chrX 831506 intron CG43867 - chrX 835410 intron CG43867 - chrX_4_830001 chrX_830001 RAL-712 1673 chrX 906701 906722 chrX 908490 908511 S-element 9 1788 2.5 1.5 2.0 3.0 1810 chrX 906701 intron CG43867 - chrX 907606 intron CG43867 - chrX 908511 intron CG43867 - chrX_9_905001 chrX_905001 RAL-712 1674 chrX 1051067 1051091 chrX 1051143 1051169 10 77 5.5 8.5 7.0 1.2 102 chrX 1051067 intron CR44779 + chrX 1051118 intron CR44779 + chrX 1051169 intron CR44779 + chrX_10_1050001 chrX_1050001 RAL-712 1675 chrX 1053117 1053119 chrX 16983076 16983077 4 15929958 7.0 3.0 5.0 0.7 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-712 1676 chrX 1151787 1151795 chrX 1152052 1152055 5 264 5.5 2.5 4.0 1.0 268 chrX 1151787 intergenic not near genes chrX 1151921 intergenic not near genes chrX 1152055 intergenic not near genes chrX_5_1150001 chrX_1150001 RAL-712 1677 chrX 1229661 1229691 chrX 1229747 1229777 10 86 0.5 1.5 1.0 5.0 116 chrX 1229661 intron CG3638 - chrX 1229719 intron CG3638 - chrX 1229777 intron CG3638 - chrX_10_1225001 chrX_1225001 RAL-712 1678 chrX 1253731 1253763 chrX 1253813 1253845 17 82 2.0 1.0 1.5 6.8 114 chrX 1253731 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253845 intron Atf3 - chrX_17_1250001 chrX_1250001 RAL-712 1679 chrX 1518035 1518071 chrX 1523437 1523472 jockey 4 5401 1.5 3.0 2.2 1.2 5437 chrX 1518035 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523472 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-712 1680 chrX 1559923 1559949 chrX 1560007 1560032 11 84 1.0 3.0 2.0 3.7 109 chrX 1559923 intron Mur2B - chrX 1559978 intron Mur2B - chrX 1560032 intron Mur2B - chrX_11_1555001 chrX_1555001 RAL-712 1681 chrX 1627984 1627999 chrX 1635452 1635467 gtwin 5 7468 3.0 5.0 4.0 1.0 7483 chrX 1627984 intron,intron Mur2B -,br + chrX 1631726 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-712 1682 chrX 1845739 1845757 chrX 1845839 1845857 6 100 3.0 1.5 2.2 1.9 118 chrX 1845739 intron CG42666 + chrX 1845798 intron CG42666 + chrX 1845857 intron CG42666 + chrX_6_1845001 chrX_1845001 RAL-712 1683 chrX 1930545 1930570 chrX 1938116 1938138 opus 4 7570 2.5 1.5 2.0 1.3 7593 chrX 1930545 intergenic CG11596 + chrX 1934342 intergenic not near genes chrX 1938138 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-712 1684 chrX 1954889 1954911 chrX 1962828 1962851 Stalker2 4 7939 3.0 2.0 2.5 1.1 7962 chrX 1954889 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962851 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-712 1685 chrX 2014062 2014083 chrX 2014142 2014163 6 80 10.0 12.5 11.2 0.5 101 chrX 2014062 intron east + chrX 2014112 intron east + chrX 2014163 intron east + chrX_6_2010001 chrX_2010001 RAL-712 1686 chrX 2023961 2023986 chrX 2024084 2024109 8 122 7.5 10.5 9.0 0.8 148 chrX 2023961 3` UTR,3` UTR east +,Actn - chrX 2024035 3` UTR,3` UTR east +,Actn - chrX 2024109 3` UTR,3` UTR east +,Actn - chrX_8_2020001 chrX_2020001 RAL-712 1687 chrX 2020871 2020894 chrX 2025590 2025613 9 4719 28.0 14.5 21.2 0.4 4742 chrX 2020871 exon east + chrX 2023242 3` UTR east + chrX 2025613 exon Actn - chrX_9_2020001 chrX_2020001 RAL-712 1688 chrX 2394275 2394306 chrX 2394357 2394388 10 82 2.0 3.5 2.8 2.6 113 chrX 2394275 intergenic not near genes chrX 2394332 intergenic not near genes chrX 2394388 intergenic not near genes chrX_10_2390001 chrX_2390001 RAL-712 1689 chrX 2399836 2399869 chrX 2408189 2408222 roo 11 8353 2.5 1.5 2.0 3.7 8386 chrX 2399836 intergenic not near genes chrX 2404029 intergenic not near genes chrX 2408222 intergenic not near genes chrX_11_2400001 chrX_2400001 RAL-712 1690 chrX 2517848 2517874 chrX 2517925 2517951 6 77 1.0 2.0 1.5 2.4 103 chrX 2517848 intron trol - chrX 2517900 intron trol - chrX 2517951 intron trol - chrX_6_2515001 chrX_2515001 RAL-712 1691 chrX 2525475 2525507 chrX 2525556 2525587 9 81 0.0 1.0 0.5 6.0 112 chrX 2525475 intron trol - chrX 2525531 intron trol - chrX 2525587 intron trol - chrX_9_2525001 chrX_2525001 RAL-712 1692 chrX 2559362 2559389 chrX 2559450 2559477 10 88 2.0 4.5 3.2 2.4 115 chrX 2559362 intron Pdfr + chrX 2559420 intron Pdfr + chrX 2559477 intron Pdfr + chrX_10_2555001 chrX_2555001 RAL-712 1693 chrX 2568196 2568224 chrX 2568444 2568472 6 248 1.5 1.5 1.5 2.4 276 chrX 2568196 intron Pdfr + chrX 2568334 intron Pdfr + chrX 2568472 intron Pdfr + chrX_6_2565001 chrX_2565001 RAL-712 1694 chrX 2578812 2578831 chrX 2578904 2578921 4 92 3.0 5.0 4.0 0.8 109 chrX 2578812 intergenic Pdfr +,Vha36-3 - chrX 2578866 intergenic Vha36-3 -,Pdfr + chrX 2578921 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-712 1695 chrX 2610384 2610398 chrX 2617500 2617515 HMS-Beagle 6 7117 2.0 2.0 2.0 2.0 7131 chrX 2610384 intergenic CG8636 - chrX 2613950 intergenic not near genes chrX 2617515 intergenic Tsp3A - chrX_6_2610001 chrX_2610001 RAL-712 1696 chrX 2758050 2758077 chrX 2758131 2758158 4 80 2.5 1.5 2.0 1.3 108 chrX 2758050 intron kirre + chrX 2758104 intron kirre + chrX 2758158 intron kirre + chrX_4_2755001 chrX_2755001 RAL-712 1697 chrX 2807365 2807393 chrX 2807460 2807488 4 95 2.0 1.0 1.5 1.6 123 chrX 2807365 intron kirre + chrX 2807426 intron kirre + chrX 2807488 intron kirre + chrX_4_2805001 chrX_2805001 RAL-712 1698 chrX 2844897 2844932 chrX 2852307 2852342 mdg1 11 7410 0.0 0.0 0.0 11.0 7445 chrX 2844897 intron kirre + chrX 2848620 intron kirre + chrX 2852342 intron kirre + chrX_11_2845001 chrX_2845001 RAL-712 1699 chrX 2888112 2888141 chrX 2888190 2888219 7 78 2.0 3.5 2.8 1.8 107 chrX 2888112 intron kirre + chrX 2888166 intron kirre + chrX 2888219 intron kirre + chrX_7_2885001 chrX_2885001 RAL-712 1700 chrX 2893730 2893749 chrX 2894822 2894842 6 1092 14.5 10.5 12.5 0.4 1112 chrX 2893730 intron,exon kirre +,CG3526 + chrX 2894286 intron kirre + chrX 2894842 intron kirre + chrX_6_2890001 chrX_2890001 RAL-712 1701 chrX 3075634 3075648 chrX 3080941 3080955 Transpac 4 5307 0.5 0.0 0.2 3.3 5321 chrX 3075634 intron kirre + chrX 3078294 intron kirre + chrX 3080955 intron kirre + chrX_4_3075001 chrX_3075001 RAL-712 1702 chrX 3107227 3107233 chrX 16983076 16983077 7 13875847 1.5 3.0 2.2 2.2 13875850 chrX 3107227 intron kirre + chrX 10045152 intron,3` UTR Cht6 +,CR45185 - chrX 16983077 intron CG45002 - chrX_7_10045001 chrX_10045001 RAL-712 1703 chrX 3365636 3365664 chrX 3365787 3365815 5 152 1.0 1.0 1.0 2.5 179 chrX 3365636 intergenic not near genes chrX 3365726 intergenic not near genes chrX 3365815 intergenic not near genes chrX_5_3365001 chrX_3365001 RAL-712 1704 chrX 3597551 3597571 chrX 3619719 3619739 roo 11 22168 4.5 4.5 4.5 2.0 22188 chrX 3597551 intron AstA-R1 + chrX 3608645 intron AstA-R1 + chrX 3619739 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-712 1705 chrX 3620464 3620495 chrX 3620563 3620594 5 99 2.0 3.5 2.8 1.3 130 chrX 3620464 intron AstA-R1 + chrX 3620529 intron AstA-R1 + chrX 3620594 intron AstA-R1 + chrX_5_3620001 chrX_3620001 RAL-712 1706 chrX 3630545 3630573 chrX 3630621 3630649 4 76 1.0 1.0 1.0 2.0 104 chrX 3630545 intron AstA-R1 + chrX 3630597 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_4_3630001 chrX_3630001 RAL-712 1707 chrX 3636187 3636209 chrX 3637120 3637136 5 930 1.5 4.0 2.8 1.3 949 chrX 3636187 intron AstA-R1 + chrX 3636662 intron AstA-R1 + chrX 3637136 intron AstA-R1 + chrX_5_3635001 chrX_3635001 RAL-712 1708 chrX 3842331 3842349 chrX 3842572 3842590 pogo 5 241 2.5 1.5 2.0 1.7 259 chrX 3842331 intron ec + chrX 3842460 intron ec + chrX 3842590 intron ec + chrX_5_3840001 chrX_3840001 RAL-712 1709 chrX 3880470 3880479 chrX 3880555 3880565 4 86 1.0 2.0 1.5 1.6 95 chrX 3880470 intergenic VhaAC39-1 + chrX 3880518 intergenic VhaAC39-1 + chrX 3880565 intergenic VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-712 1710 chrX 3881274 3881305 chrX 3881413 3881444 9 139 0.5 1.5 1.0 4.5 170 chrX 3881274 intron VhaAC39-1 + chrX 3881359 intron VhaAC39-1 + chrX 3881444 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-712 1711 chrX 3891147 3891178 chrX 3891265 3891296 4 118 1.0 0.0 0.5 2.7 149 chrX 3891147 intergenic CG42541 - chrX 3891222 intergenic CG42541 - chrX 3891296 intergenic CG42541 - chrX_4_3890001 chrX_3890001 RAL-712 1712 chrX 3916134 3916154 chrX 3916222 3916242 6 87 1.5 3.0 2.2 1.9 108 chrX 3916134 intron CG42541 - chrX 3916188 intron CG42541 - chrX 3916242 intron CG42541 - chrX_6_3915001 chrX_3915001 RAL-712 1713 chrX 3986872 3986896 chrX 3994504 3994529 412 7 7633 4.5 4.5 4.5 1.3 7657 chrX 3986872 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994529 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-712 1714 chrX 4021179 4021199 chrX 4021277 4021297 5 97 1.0 0.0 0.5 3.3 118 chrX 4021179 intergenic not near genes chrX 4021238 intergenic not near genes chrX 4021297 intergenic not near genes chrX_5_4020001 chrX_4020001 RAL-712 1715 chrX 4157901 4157923 chrX 4164931 4164958 297 5 7032 2.0 1.5 1.8 1.8 7057 chrX 4157901 intron Fas2 - chrX 4161430 intron Fas2 - chrX 4164958 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-712 1716 chrX 4358093 4358115 chrX 4358195 4358217 5 102 1.5 0.0 0.8 2.8 124 chrX 4358093 intron norpA + chrX 4358155 intron norpA + chrX 4358217 intron norpA + chrX_5_4355001 chrX_4355001 RAL-712 1717 chrX 4361443 4361464 chrX 4361522 4361543 8 79 1.0 1.5 1.2 3.6 100 chrX 4361443 intron norpA + chrX 4361493 intron norpA + chrX 4361543 intron norpA + chrX_8_4360001 chrX_4360001 RAL-712 1718 chrX 4396990 4397088 chrX 4397075 4397174 5 85 0.0 0.0 0.0 5.0 184 chrX 4396990 intron CR32773 - chrX 4397082 intron CR32773 - chrX 4397174 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-712 1719 chrX 4617442 4617442 chrX 12725569 12725573 4 8108129 3.0 6.5 4.8 0.7 8108131 chrX 4617442 intergenic peb + chrX 8671508 intergenic not near genes chrX 12725573 intron,intron Smr -,CR43963 - chrX_4_8670001 chrX_8670001 RAL-712 1720 chrX 4731812 4731831 chrX 4736904 4736924 jockey 6 5093 5.0 4.0 4.5 1.1 5112 chrX 4731812 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736924 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-712 1721 chrX 4756214 4756217 chrX 12076673 12076679 4 7320460 3.5 2.5 3.0 1.0 7320465 chrX 4756214 intergenic not near genes chrX 8416446 intron Trf2 + chrX 12076679 intron,intron CR43960 +,Ten-a + chrX_4_8415001 chrX_8415001 RAL-712 1722 chrX 4763252 4763275 chrX 4763739 4763763 Stalker4 4 488 1.5 3.0 2.2 1.2 511 chrX 4763252 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763763 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-712 1723 chrX 4792379 4792403 chrX 4792811 4792835 jockey 6 433 2.5 3.5 3.0 1.5 456 chrX 4792379 intergenic not near genes chrX 4792607 intergenic not near genes chrX 4792835 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-712 1724 chrX 4827650 4827680 chrX 4827731 4827761 8 82 1.5 4.0 2.8 2.1 111 chrX 4827650 intergenic not near genes chrX 4827706 intergenic not near genes chrX 4827761 intergenic not near genes chrX_8_4825001 chrX_4825001 RAL-712 1725 chrX 4827966 4827998 chrX 4835337 4835369 Stalker4 8 7370 1.5 2.0 1.8 2.9 7403 chrX 4827966 intergenic not near genes chrX 4831668 intergenic not near genes chrX 4835369 intergenic not near genes chrX_8_4830001 chrX_4830001 RAL-712 1726 chrX 4893364 4893387 chrX 4893633 4893656 5 269 2.0 1.5 1.8 1.8 292 chrX 4893364 intron CG42594 + chrX 4893510 intron CG42594 + chrX 4893656 intron CG42594 + chrX_5_4890001 chrX_4890001 RAL-712 1727 chrX 5096273 5096306 chrX 5103838 5103870 springer 8 7565 4.0 0.5 2.2 2.5 7597 chrX 5096273 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_8_5100001 chrX_5100001 RAL-712 1728 chrX 5122839 5122849 chrX 5123068 5123078 4 229 0.0 0.0 0.0 4.0 239 chrX 5122839 intron,intron CG15465 +,rg + chrX 5122958 intron,intron CG15465 +,rg + chrX 5123078 intron,intron CG15465 +,rg + chrX_4_5120001 chrX_5120001 RAL-712 1729 chrX 5206310 5206333 chrX 5206583 5206606 5 273 1.5 2.5 2.0 1.7 296 chrX 5206310 intron,intron CG15465 +,rg + chrX 5206458 intron,intron CG15465 +,rg + chrX 5206606 intron,intron CG15465 +,rg + chrX_5_5205001 chrX_5205001 RAL-712 1730 chrX 5338709 5338737 chrX 5339958 5339984 jockey 5 1251 2.0 0.5 1.2 2.3 1275 chrX 5338709 intergenic not near genes chrX 5339346 intergenic not near genes chrX 5339984 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-712 1731 chrX 5345402 5345429 chrX 5345512 5345540 6 111 1.0 2.0 1.5 2.4 138 chrX 5345402 intron SK + chrX 5345471 intron SK + chrX 5345540 intron SK + chrX_6_5345001 chrX_5345001 RAL-712 1732 chrX 5798861 5798890 chrX 5799023 5799052 4 162 0.0 3.5 1.8 1.4 191 chrX 5798861 intergenic not near genes chrX 5798956 intergenic not near genes chrX 5799052 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-712 1733 chrX 5884168 5884187 chrX 5884409 5884428 pogo 4 241 2.5 0.5 1.5 1.6 260 chrX 5884168 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884428 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-712 1734 chrX 6171591 6171608 chrX 6179024 6179041 Quasimodo 4 7433 2.5 1.5 2.0 1.3 7450 chrX 6171591 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179041 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-712 1735 chrX 6215339 6215372 chrX 6215422 6215455 10 83 0.5 2.5 1.5 4.0 116 chrX 6215339 intergenic not near genes chrX 6215397 intergenic not near genes chrX 6215455 intergenic not near genes chrX_10_6215001 chrX_6215001 RAL-712 1736 chrX 6315160 6315186 chrX 6315290 6315316 5 130 2.5 3.5 3.0 1.2 156 chrX 6315160 intron CG15894 + chrX 6315238 intron CG15894 + chrX 6315316 intron CG15894 + chrX_5_6315001 chrX_6315001 RAL-712 1737 chrX 6335226 6335236 chrX 6337736 6337746 Tirant 4 2510 0.0 4.5 2.2 1.2 2520 chrX 6335226 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337746 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-712 1738 chrX 6388668 6388694 chrX 6388744 6388770 6 76 1.5 0.0 0.8 3.3 102 chrX 6388668 intergenic not near genes chrX 6388719 intergenic not near genes chrX 6388770 intergenic not near genes chrX_6_6385001 chrX_6385001 RAL-712 1739 chrX 6392867 6392896 chrX 6397629 6397661 Doc 5 4764 2.0 1.5 1.8 1.8 4794 chrX 6392867 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397661 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-712 1740 chrX 6562817 6562851 chrX 6571299 6571330 Tirant 23 8482 2.0 2.5 2.2 7.2 8513 chrX 6562817 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571330 intron CG34417 + chrX_23_6565001 chrX_6565001 RAL-712 1741 chrX 6581550 6581580 chrX 6581629 6581659 12 79 2.0 3.5 2.8 3.2 109 chrX 6581550 intron CG34417 + chrX 6581604 intron CG34417 + chrX 6581659 intron CG34417 + chrX_12_6580001 chrX_6580001 RAL-712 1742 chrX 6605482 6605506 chrX 6608503 6608528 Burdock 4 3022 0.0 4.0 2.0 1.3 3046 chrX 6605482 intron pigs + chrX 6607005 intron pigs + chrX 6608528 intron pigs + chrX_4_6605001 chrX_6605001 RAL-712 1743 chrX 6871197 6871209 chrX 6871287 6871299 4 90 1.0 0.5 0.8 2.2 102 chrX 6871197 intron CG43736 + chrX 6871248 intron CG43736 + chrX 6871299 intron CG43736 + chrX_4_6870001 chrX_6870001 RAL-712 1744 chrX 6897586 6897707 chrX 6897665 6897817 9 103 1.5 1.5 1.5 3.6 231 chrX 6897586 intergenic not near genes chrX 6897702 intergenic not near genes chrX 6897817 intergenic not near genes chrX_9_6895001 chrX_6895001 RAL-712 1745 chrX 6989507 6989529 chrX 6989593 6989616 4 87 1.0 3.5 2.2 1.2 109 chrX 6989507 intron ogre - chrX 6989562 intron ogre - chrX 6989616 intron ogre - chrX_4_6985001 chrX_6985001 RAL-712 1746 chrX 7023599 7023630 chrX 7030989 7031020 Tabor 7 7390 3.0 2.0 2.5 2.0 7421 chrX 7023599 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031020 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-712 1747 chrX 7125247 7125276 chrX 7134405 7134435 roo 8 9159 1.0 2.0 1.5 3.2 9188 chrX 7125247 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134435 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-712 1748 chrX 7268372 7268401 chrX 7268450 7268478 10 78 2.0 3.0 2.5 2.9 106 chrX 7268372 intron CR44357 - chrX 7268425 intron CR44357 - chrX 7268478 intron CR44357 - chrX_10_7265001 chrX_7265001 RAL-712 1749 chrX 7381158 7381189 chrX 7381241 7381271 5 83 1.0 1.0 1.0 2.5 113 chrX 7381158 intron,intron CR44357 -,CG1677 - chrX 7381214 intron,intron CR44357 -,CG1677 - chrX 7381271 intron,intron CR44357 -,CG1677 - chrX_5_7380001 chrX_7380001 RAL-712 1750 chrX 7570641 7570667 chrX 7570773 7570801 4 134 1.0 0.5 0.8 2.2 160 chrX 7570641 intergenic not near genes chrX 7570721 intergenic not near genes chrX 7570801 intergenic not near genes chrX_4_7570001 chrX_7570001 RAL-712 1751 chrX 7702907 7702926 chrX 7703346 7703365 jockey 4 439 2.5 4.0 3.2 1.0 458 chrX 7702907 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-712 1752 chrX 7845726 7845752 chrX 7847217 7847243 hopper2 7 1491 0.0 1.5 0.8 3.9 1517 chrX 7845726 intergenic not near genes chrX 7846484 intergenic not near genes chrX 7847243 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-712 1753 chrX 8092294 8092313 chrX 8092379 8092398 4 85 2.5 2.0 2.2 1.2 104 chrX 8092294 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092398 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-712 1754 chrX 8275315 8275347 chrX 8275402 8275434 6 87 2.5 4.0 3.2 1.4 119 chrX 8275315 exon CG1636 + chrX 8275374 3` UTR CG1636 + chrX 8275434 3` UTR CG1636 + chrX_6_8275001 chrX_8275001 RAL-712 1755 chrX 8279540 8279566 chrX 8279628 8279654 6 88 1.0 1.5 1.2 2.7 114 chrX 8279540 3` UTR nAChRalpha3 - chrX 8279597 3` UTR nAChRalpha3 - chrX 8279654 3` UTR nAChRalpha3 - chrX_6_8275001 chrX_8275001 RAL-712 1756 chrX 8536760 8536780 chrX 8536834 8536856 6 76 4.0 6.0 5.0 1.0 96 chrX 8536760 intron Nrg + chrX 8536808 intron Nrg + chrX 8536856 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-712 1757 chrX 8601026 8601059 chrX 8601111 8601144 12 85 2.0 3.5 2.8 3.2 118 chrX 8601026 3` UTR Crag + chrX 8601085 3` UTR Crag + chrX 8601144 3` UTR Crag + chrX_12_8600001 chrX_8600001 RAL-712 1758 chrX 8708693 8708717 chrX 8708876 8708900 7 183 12.0 10.0 11.0 0.6 207 chrX 8708693 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708900 intergenic not near genes chrX_7_8705001 chrX_8705001 RAL-712 1759 chrX 8922328 8922361 chrX 8922762 8922795 jockey 9 434 3.0 3.5 3.2 2.1 467 chrX 8922328 intron rdgA + chrX 8922562 intron rdgA + chrX 8922795 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-712 1760 chrX 8948756 8948791 chrX 8956266 8956299 roo 4 7510 0.0 1.0 0.5 2.7 7543 chrX 8948756 intron rdgA + chrX 8952528 intron rdgA + chrX 8956299 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-712 1761 chrX 8971897 8971913 chrX 8971976 8971992 5 78 0.5 2.5 1.5 2.0 95 chrX 8971897 intron rdgA + chrX 8971944 intron rdgA + chrX 8971992 intron rdgA + chrX_5_8970001 chrX_8970001 RAL-712 1762 chrX 9072814 9072839 chrX 9072947 9072972 4 131 1.0 0.5 0.8 2.2 158 chrX 9072814 intron CG44325 - chrX 9072893 intron CG44325 - chrX 9072972 intron CG44325 - chrX_4_9070001 chrX_9070001 RAL-712 1763 chrX 9210849 9210858 chrX 9210924 9210934 4 76 5.0 2.0 3.5 0.9 85 chrX 9210849 5` UTR CG12119 - chrX 9210892 intergenic CG12119 - chrX 9210934 intergenic CG12119 - chrX_4_9210001 chrX_9210001 RAL-712 1764 chrX 9224932 9224957 chrX 9225061 9225083 5 128 0.0 0.0 0.0 5.0 151 chrX 9224932 intergenic not near genes chrX 9225008 intergenic CG15370 + chrX 9225083 intergenic CG15370 + chrX_5_9225001 chrX_9225001 RAL-712 1765 chrX 9337953 9337969 chrX 9338044 9338061 9 91 0.0 2.5 1.2 4.1 108 chrX 9337953 intron CG34449 - chrX 9338007 intron CG34449 - chrX 9338061 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-712 1766 chrX 9391573 9391597 chrX 9391719 9391743 5 146 1.5 1.5 1.5 2.0 170 chrX 9391573 intron mgl - chrX 9391658 intron mgl - chrX 9391743 intron mgl - chrX_5_9390001 chrX_9390001 RAL-712 1767 chrX 9508134 9508165 chrX 9509651 9509683 jockey 4 1518 2.5 2.5 2.5 1.1 1549 chrX 9508134 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509683 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-712 1768 chrX 9575797 9575824 chrX 9576119 9576148 mdg3 8 323 2.0 1.5 1.8 2.9 351 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575972 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-712 1769 chrX 9595352 9595372 chrX 9595437 9595457 5 85 5.0 1.5 3.2 1.2 105 chrX 9595352 5` UTR CR45543 + chrX 9595404 5` UTR CR45543 + chrX 9595457 5` UTR CR45543 + chrX_5_9595001 chrX_9595001 RAL-712 1770 chrX 9923397 9923421 chrX 9923487 9923511 5 90 1.5 2.0 1.8 1.8 114 chrX 9923397 intergenic not near genes chrX 9923454 intergenic not near genes chrX 9923511 intergenic not near genes chrX_5_9920001 chrX_9920001 RAL-712 1771 chrX 10317557 10317580 chrX 10317635 10317658 4 78 1.0 0.5 0.8 2.2 101 chrX 10317557 intron alpha-Man-I - chrX 10317608 intron alpha-Man-I - chrX 10317658 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-712 1772 chrX 10550336 10550356 chrX 10550413 10550434 6 78 2.0 2.0 2.0 2.0 98 chrX 10550336 intron spri - chrX 10550385 intron spri - chrX 10550434 intron spri - chrX_6_10550001 chrX_10550001 RAL-712 1773 chrX 10550857 10550889 chrX 10552324 10552356 hobo 7 1467 1.5 1.5 1.5 2.8 1499 chrX 10550857 intron spri - chrX 10551606 intron spri - chrX 10552356 intron spri - chrX_7_10550001 chrX_10550001 RAL-712 1774 chrX 10666448 10666473 chrX 10666614 10666640 8 167 2.0 1.0 1.5 3.2 192 chrX 10666448 intron X11Lbeta + chrX 10666544 intron X11Lbeta + chrX 10666640 intron X11Lbeta + chrX_8_10665001 chrX_10665001 RAL-712 1775 chrX 10686055 10686070 chrX 10691192 10691207 roo 5 5137 3.0 1.5 2.2 1.6 5152 chrX 10686055 intron X11Lbeta + chrX 10688631 intron X11Lbeta + chrX 10691207 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-712 1776 chrX 10719123 10719151 chrX 10719207 10719235 4 84 0.0 2.5 1.2 1.8 112 chrX 10719123 intron CG32676 - chrX 10719179 intron CG32676 - chrX 10719235 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-712 1777 chrX 10899832 10899845 chrX 10899921 10899934 4 89 0.0 1.0 0.5 2.7 102 chrX 10899832 intergenic CG15208 + chrX 10899883 intergenic CG15208 + chrX 10899934 intergenic CG15208 + chrX_4_10895001 chrX_10895001 RAL-712 1778 chrX 11069159 11069188 chrX 11069300 11069331 7 142 1.0 0.0 0.5 4.7 172 chrX 11069159 intergenic not near genes chrX 11069245 intergenic not near genes chrX 11069331 intergenic not near genes chrX_7_11065001 chrX_11065001 RAL-712 1779 chrX 11095998 11096020 chrX 11103100 11103122 HMS-Beagle 5 7102 4.0 1.5 2.8 1.3 7124 chrX 11095998 intergenic not near genes chrX 11099560 intergenic not near genes chrX 11103122 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-712 1780 chrX 11633417 11633449 chrX 11640471 11640503 297 8 7054 3.5 2.0 2.8 2.1 7086 chrX 11633417 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-712 1781 chrX 11719878 11719901 chrX 11719958 11719981 8 80 1.0 2.0 1.5 3.2 103 chrX 11719878 3` UTR prtp + chrX 11719930 intergenic prtp +,Tango10 + chrX 11719981 intergenic prtp +,Tango10 + chrX_8_11715001 chrX_11715001 RAL-712 1782 chrX 11839038 11839067 chrX 11839286 11839314 11 248 0.0 1.5 0.8 6.1 276 chrX 11839038 intergenic not near genes chrX 11839176 intergenic Cyp28c1 + chrX 11839314 intergenic Cyp28c1 + chrX_11_11835001 chrX_11835001 RAL-712 1783 chrX 11936569 11936585 chrX 11936668 11936683 4 99 0.0 3.5 1.8 1.4 114 chrX 11936569 intron cac - chrX 11936626 intron cac - chrX 11936683 intron cac - chrX_4_11935001 chrX_11935001 RAL-712 1784 chrX 12038087 12038116 chrX 12038281 12038310 10 194 4.0 3.0 3.5 2.2 223 chrX 12038087 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038310 intergenic not near genes chrX_10_12035001 chrX_12035001 RAL-712 1785 chrX 12176738 12176760 chrX 12176814 12176836 6 76 3.5 3.5 3.5 1.3 98 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176787 intron,3` UTR Ten-a +,CG1924 - chrX 12176836 intron,3` UTR Ten-a +,CG1924 - chrX_6_12175001 chrX_12175001 RAL-712 1786 chrX 12245693 12245713 chrX 12245775 12245795 4 82 0.5 1.5 1.0 2.0 102 chrX 12245693 intron Ten-a + chrX 12245744 intron Ten-a + chrX 12245795 intron Ten-a + chrX_4_12245001 chrX_12245001 RAL-712 1787 chrX 12248744 12248752 chrX 12248836 12248844 5 92 3.5 0.5 2.0 1.7 100 chrX 12248744 intron Ten-a + chrX 12248794 intron Ten-a + chrX 12248844 intron Ten-a + chrX_5_12245001 chrX_12245001 RAL-712 1788 chrX 12272850 12272862 chrX 12272929 12272938 4 78 2.0 2.5 2.2 1.2 88 chrX 12272850 intron Ten-a + chrX 12272894 intron Ten-a + chrX 12272938 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-712 1789 chrX 12350771 12350799 chrX 12350852 12350880 7 81 4.0 0.0 2.0 2.3 109 chrX 12350771 intergenic not near genes chrX 12350826 intergenic not near genes chrX 12350880 intergenic not near genes chrX_7_12350001 chrX_12350001 RAL-712 1790 chrX 12357006 12357038 chrX 12357162 12357194 10 156 3.5 0.5 2.0 3.3 188 chrX 12357006 intergenic not near genes chrX 12357100 intergenic not near genes chrX 12357194 intergenic not near genes chrX_10_12355001 chrX_12355001 RAL-712 1791 chrX 12648115 12648148 chrX 12648197 12648230 8 82 1.5 2.0 1.8 2.9 115 chrX 12648115 intron Tomosyn + chrX 12648172 intron Tomosyn + chrX 12648230 intron Tomosyn + chrX_8_12645001 chrX_12645001 RAL-712 1792 chrX 12781204 12781209 chrX 12781285 12781291 5 82 3.0 0.5 1.8 1.8 87 chrX 12781204 intron CG32647 - chrX 12781248 intron CG32647 - chrX 12781291 intron CG32647 - chrX_5_12780001 chrX_12780001 RAL-712 1793 chrX 12960775 12960796 chrX 12960854 12960876 5 80 1.5 1.0 1.2 2.3 101 chrX 12960775 3` UTR CG32642 + chrX 12960826 intergenic CG32642 + chrX 12960876 intergenic CG32642 + chrX_5_12960001 chrX_12960001 RAL-712 1794 chrX 13008358 13008376 chrX 13008596 13008615 4 239 1.5 1.5 1.5 1.6 257 chrX 13008358 intron rad + chrX 13008486 intron rad + chrX 13008615 intron rad + chrX_4_13005001 chrX_13005001 RAL-712 1795 chrX 13116096 13116112 chrX 13116216 13116232 4 120 4.5 3.0 3.8 0.8 136 chrX 13116096 intron CG42237 + chrX 13116164 intron CG42237 + chrX 13116232 intron CG42237 + chrX_4_13115001 chrX_13115001 RAL-712 1796 chrX 13172353 13172381 chrX 13172429 13172457 5 76 1.5 2.0 1.8 1.8 104 chrX 13172353 exon CG34411 - chrX 13172405 intron CG34411 - chrX 13172457 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-712 1797 chrX 13577770 13577776 chrX 13578006 13578012 4 236 2.5 4.5 3.5 0.9 242 chrX 13577770 intron Tango13 + chrX 13577891 intron Tango13 + chrX 13578012 intron Tango13 + chrX_4_13575001 chrX_13575001 RAL-712 1798 chrX 13934295 13934321 chrX 13934378 13934404 5 83 0.0 1.5 0.8 2.8 109 chrX 13934295 intron mamo - chrX 13934350 intron mamo - chrX 13934404 intron mamo - chrX_5_13930001 chrX_13930001 RAL-712 1799 chrX 13937980 13938000 chrX 13941251 13941271 I-element 4 3270 1.0 1.0 1.0 2.0 3291 chrX 13937980 intron mamo - chrX 13939626 intron mamo - chrX 13941271 intron mamo - chrX_4_13935001 chrX_13935001 RAL-712 1800 chrX 14105020 14105053 chrX 14114171 14114204 roo 6 9150 1.5 3.0 2.2 1.9 9184 chrX 14105020 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-712 1801 chrX 14157600 14157617 chrX 14163257 14163274 297 10 5657 0.5 2.0 1.2 4.5 5674 chrX 14157600 intergenic not near genes chrX 14160437 intergenic not near genes chrX 14163274 intergenic not near genes chrX_10_14160001 chrX_14160001 RAL-712 1802 chrX 14413827 14413856 chrX 14413921 14413950 7 94 2.0 2.0 2.0 2.3 123 chrX 14413827 intron dpr8 + chrX 14413888 intron dpr8 + chrX 14413950 intron dpr8 + chrX_7_14410001 chrX_14410001 RAL-712 1803 chrX 14443682 14443706 chrX 14443771 14443798 6 91 2.0 1.5 1.8 2.1 116 chrX 14443682 intron dpr8 + chrX 14443740 intron dpr8 + chrX 14443798 intron dpr8 + chrX_6_14440001 chrX_14440001 RAL-712 1804 chrX 14572884 14572909 chrX 14572971 14572997 10 88 1.5 2.5 2.0 3.3 113 chrX 14572884 intergenic not near genes chrX 14572940 intergenic not near genes chrX 14572997 intergenic not near genes chrX_10_14570001 chrX_14570001 RAL-712 1805 chrX 14636465 14636492 chrX 14641906 14641933 I-element 6 5441 2.5 2.0 2.2 1.9 5468 chrX 14636465 intron NetA - chrX 14639199 intron NetA - chrX 14641933 intron NetA - chrX_6_14635001 chrX_14635001 RAL-712 1806 chrX 14778027 14778062 chrX 14782824 14782859 Doc 8 4797 1.0 1.5 1.2 3.6 4832 chrX 14778027 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782859 intergenic Ag5r2 - chrX_8_14780001 chrX_14780001 RAL-712 1807 chrX 14818763 14818797 chrX 14823967 14824001 copia 6 5204 2.5 3.0 2.8 1.6 5238 chrX 14818763 intron rut - chrX 14821382 intron rut - chrX 14824001 intron rut - chrX_6_14820001 chrX_14820001 RAL-712 1808 chrX 14968087 14968097 chrX 14968166 14968176 5 79 2.0 3.0 2.5 1.4 89 chrX 14968087 intron eag + chrX 14968132 intron eag + chrX 14968176 intron eag + chrX_5_14965001 chrX_14965001 RAL-712 1809 chrX 2159854 2159862 chrX 15115025 15115032 4 12955171 20.5 10.0 15.2 0.2 12955178 chrX 2159854 exon Cyp4d1 - chrX 8637443 intron oc - chrX 15115032 exon Cyp4s3 - chrX_4_8635001 chrX_8635001 RAL-712 1810 chrX 15248272 15248287 chrX 15248338 15248363 4 74 0.5 1.0 0.8 2.2 91 chrX 15248272 intergenic not near genes chrX 15248318 intergenic not near genes chrX 15248363 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-712 1811 chrX 15273715 15273723 chrX 15274882 15274889 1360 4 1167 6.5 5.0 5.8 0.6 1174 chrX 15273715 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274889 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-712 1812 chrX 15277638 15277664 chrX 15277722 15277748 4 84 2.5 1.5 2.0 1.3 110 chrX 15277638 intergenic not near genes chrX 15277693 intergenic not near genes chrX 15277748 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-712 1813 chrX 15413059 15413074 chrX 15417361 15417376 Juan 4 4302 2.5 0.0 1.2 1.8 4317 chrX 15413059 intron Cngl - chrX 15415218 intron Cngl - chrX 15417376 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-712 1814 chrX 15435689 15435705 chrX 15436122 15436138 rover 7 433 0.0 4.5 2.2 2.2 449 chrX 15435689 intron Cngl - chrX 15435914 intron Cngl - chrX 15436138 intron Cngl - chrX_7_15435001 chrX_15435001 RAL-712 1815 chrX 15492505 15492531 chrX 15492596 15492621 7 91 0.0 2.0 1.0 3.5 116 chrX 15492505 intron Gmap + chrX 15492563 intron Gmap + chrX 15492621 intron Gmap + chrX_7_15490001 chrX_15490001 RAL-712 1816 chrX 15678036 15678062 chrX 15678113 15678137 8 77 3.0 2.0 2.5 2.3 101 chrX 15678036 intergenic CG12708 + chrX 15678086 intergenic CG12708 + chrX 15678137 intergenic CG12708 + chrX_8_15675001 chrX_15675001 RAL-712 1817 chrX 16222777 16222809 chrX 16231127 16231159 roo 6 8350 0.0 0.0 0.0 6.0 8382 chrX 16222777 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231159 intergenic not near genes chrX_6_16225001 chrX_16225001 RAL-712 1818 chrX 16437609 16437632 chrX 16437696 16437719 6 87 1.0 2.5 1.8 2.1 110 chrX 16437609 3` UTR,3` UTR hang +,CG9947 - chrX 16437664 3` UTR,3` UTR hang +,CG9947 - chrX 16437719 3` UTR,3` UTR hang +,CG9947 - chrX_6_16435001 chrX_16435001 RAL-712 1819 chrX 16492647 16492679 chrX 16498224 16498256 mdg3 5 5577 2.0 1.0 1.5 2.0 5609 chrX 16492647 intron para - chrX 16495452 intron para - chrX 16498256 intron para - chrX_5_16495001 chrX_16495001 RAL-712 1820 chrX 16689628 16689655 chrX 16689714 16689740 4 86 1.0 0.0 0.5 2.7 112 chrX 16689628 intron Sep4 - chrX 16689684 intron Sep4 - chrX 16689740 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-712 1821 chrX 16870088 16870095 chrX 16870171 16870178 6 83 1.5 3.0 2.2 1.9 90 chrX 16870088 intron CG13003 - chrX 16870133 intron CG13003 - chrX 16870178 intron CG13003 - chrX_6_16870001 chrX_16870001 RAL-712 1822 chrX 17011970 17012000 chrX 17012053 17012083 7 82 3.0 4.0 3.5 1.6 113 chrX 17011970 intron CG45002 - chrX 17012026 intron CG45002 - chrX 17012083 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-712 1823 chrX 17089599 17089632 chrX 17089725 17089758 5 126 0.5 1.5 1.0 2.5 159 chrX 17089599 intergenic not near genes chrX 17089678 intergenic not near genes chrX 17089758 intergenic not near genes chrX_5_17085001 chrX_17085001 RAL-712 1824 chrX 17195222 17195234 chrX 17200308 17200320 flea 6 5085 2.0 4.5 3.2 1.4 5098 chrX 17195222 3` UTR baz + chrX 17197771 3` UTR baz + chrX 17200320 3` UTR baz + chrX_6_17195001 chrX_17195001 RAL-712 1825 chrX 17205848 17205853 chrX 17205938 17205943 4 90 1.0 3.5 2.2 1.2 95 chrX 17205848 intergenic not near genes chrX 17205896 intergenic not near genes chrX 17205943 intergenic CG32564 + chrX_4_17205001 chrX_17205001 RAL-712 1826 chrX 17316384 17316396 chrX 17316468 17316480 4 84 0.5 0.0 0.2 3.3 96 chrX 17316384 intron B-H2 + chrX 17316432 intron B-H2 + chrX 17316480 intron B-H2 + chrX_4_17315001 chrX_17315001 RAL-712 1827 chrX 17352599 17352615 chrX 17352699 17352718 9 103 0.0 1.5 0.8 5.0 119 chrX 17352599 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352718 intergenic not near genes chrX_9_17350001 chrX_17350001 RAL-712 1828 chrX 17502355 17502372 chrX 17502435 17502452 6 80 0.5 2.5 1.5 2.4 97 chrX 17502355 intron CG43658 - chrX 17502404 intron CG43658 - chrX 17502452 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-712 1829 chrX 17680889 17680919 chrX 17680965 17680996 6 77 1.0 2.5 1.8 2.1 107 chrX 17680889 intron chas - chrX 17680942 intron chas - chrX 17680996 intron chas - chrX_6_17680001 chrX_17680001 RAL-712 1830 chrX 17740374 17740402 chrX 17740450 17740477 7 76 1.5 3.0 2.2 2.2 103 chrX 17740374 intron CG42684 + chrX 17740426 intron CG42684 + chrX 17740477 intron CG42684 + chrX_7_17740001 chrX_17740001 RAL-712 1831 chrX 17782574 17782590 chrX 17782663 17782679 4 89 1.0 1.5 1.2 1.8 105 chrX 17782574 intergenic not near genes chrX 17782626 intergenic not near genes chrX 17782679 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-712 1832 chrX 17968898 17968919 chrX 17969016 17969037 5 118 1.5 1.5 1.5 2.0 139 chrX 17968898 intron Sh - chrX 17968968 intron Sh - chrX 17969037 intron Sh - chrX_5_17965001 chrX_17965001 RAL-712 1833 chrX 18122826 18122854 chrX 18122902 18122929 9 76 3.0 5.0 4.0 1.8 103 chrX 18122826 5` UTR CR45606 + chrX 18122878 5` UTR CR45606 + chrX 18122929 intergenic CR45606 + chrX_9_18120001 chrX_18120001 RAL-712 1834 chrX 18128214 18128241 chrX 18131049 18131076 12 2834 18.0 14.0 16.0 0.7 2862 chrX 18128214 intergenic mir-210 + chrX 18129645 3` UTR CG43133 - chrX 18131076 3` UTR ari-1 - chrX_12_18125001 chrX_18125001 RAL-712 1835 chrX 18182313 18182331 chrX 18182668 18182686 6 355 1.5 1.0 1.2 2.7 373 chrX 18182313 intron Frq2 + chrX 18182500 intron Frq2 + chrX 18182686 intron Frq2 + chrX_6_18180001 chrX_18180001 RAL-712 1836 chrX 18194065 18194105 chrX 18194600 18194640 BS 11 535 1.0 2.0 1.5 4.4 575 chrX 18194065 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194640 intron Frq2 + chrX_11_18190001 chrX_18190001 RAL-712 1837 chrX 18429492 18429527 chrX 18434803 18434838 Transpac 5 5311 1.0 1.5 1.2 2.3 5346 chrX 18429492 intergenic not near genes chrX 18432165 intergenic not near genes chrX 18434838 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-712 1838 chrX 18645017 18645047 chrX 18645115 18645145 5 98 0.5 4.5 2.5 1.4 128 chrX 18645017 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645145 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-712 1839 chrX 18896914 18896939 chrX 18896991 18897016 6 76 1.5 2.5 2.0 2.0 102 chrX 18896914 intergenic CG7349 + chrX 18896965 intergenic CG7349 + chrX 18897016 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-712 1840 chrX 18957079 18957088 chrX 18965741 18965746 roo 4 8662 2.0 0.5 1.2 1.8 8667 chrX 18957079 intron CG43759 + chrX 18961412 intron CG43759 + chrX 18965746 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-712 1841 chrX 19014374 19014390 chrX 19014453 19014469 5 79 1.0 2.0 1.5 2.0 95 chrX 19014374 intron CG43759 + chrX 19014422 intron CG43759 + chrX 19014469 intron CG43759 + chrX_5_19010001 chrX_19010001 RAL-712 1842 chrX 19020589 19020623 chrX 19020667 19020701 6 78 0.0 2.0 1.0 3.0 112 chrX 19020589 intron CG43759 + chrX 19020645 intron CG43759 + chrX 19020701 intron CG43759 + chrX_6_19020001 chrX_19020001 RAL-712 1843 chrX 19060424 19060438 chrX 19065208 19065222 Doc 4 4784 1.5 2.0 1.8 1.4 4798 chrX 19060424 intron CG14190 + chrX 19062823 intron CG14190 + chrX 19065222 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-712 1844 chrX 19099653 19099666 chrX 19099736 19099749 4 83 5.5 1.0 3.2 1.0 96 chrX 19099653 intergenic not near genes chrX 19099701 intergenic not near genes chrX 19099749 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-712 1845 chrX 19124440 19124455 chrX 19124528 19124543 4 88 1.0 0.5 0.8 2.2 103 chrX 19124440 intergenic CG15882 - chrX 19124492 intergenic CG15882 - chrX 19124543 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-712 1846 chrX 19125692 19125720 chrX 19125821 19125849 7 129 2.0 2.5 2.2 2.2 157 chrX 19125692 intron tgy - chrX 19125770 intron tgy - chrX 19125849 intron tgy - chrX_7_19125001 chrX_19125001 RAL-712 1847 chrX 19176214 19176232 chrX 19176294 19176316 4 83 2.5 2.0 2.2 1.2 102 chrX 19176214 3` UTR CG7556 - chrX 19176265 3` UTR CG7556 - chrX 19176316 3` UTR CG7556 - chrX_4_19175001 chrX_19175001 RAL-712 1848 chrX 19240217 19240242 chrX 19240303 19240326 10 86 2.0 2.5 2.2 3.1 109 chrX 19240217 intron CG14196 - chrX 19240272 intron CG14196 - chrX 19240326 intron CG14196 - chrX_10_19240001 chrX_19240001 RAL-712 1849 chrX 13057298 13057300 chrX 19242812 19242814 14 6185514 5.5 0.0 2.8 3.7 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_14_16150001 chrX_16150001 RAL-712 1850 chrX 19256651 19256673 chrX 19256730 19256752 5 79 2.5 1.5 2.0 1.7 101 chrX 19256651 intron rictor - chrX 19256702 intron rictor - chrX 19256752 intron rictor - chrX_5_19255001 chrX_19255001 RAL-712 1851 chrX 19285812 19285829 chrX 19286023 19286040 6 210 2.5 1.5 2.0 2.0 228 chrX 19285812 intron CG8034 - chrX 19285926 intron CG8034 - chrX 19286040 intron CG8034 - chrX_6_19285001 chrX_19285001 RAL-712 1852 chrX 19315770 19315784 chrX 19315870 19315884 6 100 2.0 0.0 1.0 3.0 114 chrX 19315770 intron out - chrX 19315827 intron out - chrX 19315884 intron out - chrX_6_19315001 chrX_19315001 RAL-712 1853 chrX 19356987 19357016 chrX 19358428 19358457 NOF 12 1441 2.5 0.5 1.5 4.8 1470 chrX 19356987 intron kek5 + chrX 19357722 intron kek5 + chrX 19358457 intron kek5 + chrX_12_19355001 chrX_19355001 RAL-712 1854 chrX 16983076 16983076 chrX 19404963 19404965 4 2421887 4.0 12.5 8.2 0.4 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-712 1855 chrX 19472117 19472156 chrX 19472687 19472726 jockey 12 570 3.0 1.0 2.0 4.0 609 chrX 19472117 intergenic kek5 + chrX 19472422 intergenic not near genes chrX 19472726 intergenic not near genes chrX_12_19470001 chrX_19470001 RAL-712 1856 chrX 19593948 19593974 chrX 19594033 19594056 11 85 2.0 3.0 2.5 3.1 108 chrX 19593948 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594056 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-712 1857 chrX 19710073 19710104 chrX 19711859 19711890 S-element 12 1786 0.5 2.5 1.5 4.8 1817 chrX 19710073 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_12_19710001 chrX_19710001 RAL-712 1858 chrX 19744633 19744663 chrX 19744758 19744789 4 124 17.0 16.5 16.8 0.2 156 chrX 19744633 5` UTR,exon CG33932 +,Rpp20 + chrX 19744711 intron,intron CG33932 +,Rpp20 + chrX 19744789 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-712 1859 chrX 19822828 19822862 chrX 19822995 19823029 10 167 5.5 2.5 4.0 2.0 201 chrX 19822828 intergenic not near genes chrX 19822928 intergenic skpE - chrX 19823029 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-712 1860 chrX 19881456 19881484 chrX 19881536 19881565 6 81 0.5 1.5 1.0 3.0 109 chrX 19881456 intron Hers + chrX 19881510 intron Hers + chrX 19881565 intron Hers + chrX_6_19880001 chrX_19880001 RAL-712 1861 chrX 19983867 19983899 chrX 19983947 19983979 6 80 1.5 1.0 1.2 2.7 112 chrX 19983867 intergenic not near genes chrX 19983923 intergenic not near genes chrX 19983979 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-712 1862 chrX 19992416 19992431 chrX 19992491 19992507 5 75 4.5 7.0 5.8 0.7 91 chrX 19992416 intergenic not near genes chrX 19992462 intergenic not near genes chrX 19992507 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-712 1863 chrX 20052795 20052812 chrX 20052879 20052896 6 83 3.0 0.0 1.5 2.4 101 chrX 20052795 intron Dop2R - chrX 20052846 intron Dop2R - chrX 20052896 intron Dop2R - chrX_6_20050001 chrX_20050001 RAL-712 1864 chrX 20105196 20105229 chrX 20105299 20105332 8 103 33.0 28.5 30.8 0.3 136 chrX 20105196 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-712 1865 chrX 20279762 20279778 chrX 20279843 20279859 4 81 0.0 0.0 0.0 4.0 97 chrX 20279762 intergenic not near genes chrX 20279810 intergenic not near genes chrX 20279859 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-712 1866 chrX 20312881 20312910 chrX 20312959 20312988 6 78 1.5 1.0 1.2 2.7 107 chrX 20312881 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312988 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-712 1867 chrX 20359137 20359173 chrX 20359215 20359251 7 78 1.0 2.0 1.5 2.8 114 chrX 20359137 intergenic not near genes chrX 20359194 intergenic not near genes chrX 20359251 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-712 1868 chrX 20374104 20374127 chrX 20374180 20374203 7 76 1.0 3.0 2.0 2.3 99 chrX 20374104 intergenic not near genes chrX 20374154 intergenic not near genes chrX 20374203 intergenic not near genes chrX_7_20370001 chrX_20370001 RAL-712 1869 chrX 20377325 20377344 chrX 20378792 20378811 hobo 6 1467 5.0 1.5 3.2 1.4 1486 chrX 20377325 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378811 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-712 1870 chrX 20443174 20443190 chrX 20443250 20443266 4 76 4.5 2.0 3.2 1.0 92 chrX 20443174 exon CG1695 + chrX 20443220 intron CG1695 + chrX 20443266 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-712 1871 chrX 20468013 20468032 chrX 20468101 20468120 6 88 0.0 0.0 0.0 6.0 107 chrX 20468013 intron GstT3 + chrX 20468066 intron GstT3 + chrX 20468120 intron GstT3 + chrX_6_20465001 chrX_20465001 RAL-712 1872 chrX 20504151 20504157 chrX 20505671 20505678 transib2 4 1520 2.0 4.0 3.0 1.0 1527 chrX 20504151 intron RhoGAP19D - chrX 20504914 intron RhoGAP19D - chrX 20505678 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-712 1873 chrX 20528600 20528618 chrX 20528948 20528966 4 348 4.0 2.5 3.2 1.0 366 chrX 20528600 intergenic not near genes chrX 20528783 intergenic not near genes chrX 20528966 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-712 1874 chrX 20583728 20583758 chrX 20583898 20583929 4 171 0.0 0.0 0.0 4.0 201 chrX 20583728 intergenic not near genes chrX 20583828 intergenic not near genes chrX 20583929 intergenic not near genes chrX_4_20580001 chrX_20580001 RAL-712 1875 chrX 20635433 20635440 chrX 20635599 20635606 4 166 3.5 3.0 3.2 1.0 173 chrX 20635433 intergenic not near genes chrX 20635520 intergenic not near genes chrX 20635606 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-712 1876 chrX 20836726 20836751 chrX 20844327 20844353 roo 5 7602 1.5 1.0 1.2 2.3 7627 chrX 20836726 intron shakB - chrX 20840540 intron shakB - chrX 20844353 intron shakB - chrX_5_20840001 chrX_20840001 RAL-712 1877 chrX 20871591 20871601 chrX 20871668 20871678 5 77 2.5 0.5 1.5 2.0 87 chrX 20871591 intron shakB - chrX 20871634 intron shakB - chrX 20871678 intron shakB - chrX_5_20870001 chrX_20870001 RAL-712 1878 chrX 20915043 20915073 chrX 20915214 20915244 4 171 2.5 0.5 1.5 1.6 201 chrX 20915043 intron shakB - chrX 20915144 intron shakB - chrX 20915244 intron shakB - chrX_4_20915001 chrX_20915001 RAL-712 1879 chrX 20940726 20940749 chrX 20942195 20942218 hobo 6 1468 4.5 4.0 4.2 1.2 1492 chrX 20940726 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942218 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-712 1880 chrX 20981026 20981060 chrX 20981129 20981163 6 103 2.5 0.5 1.5 2.4 137 chrX 20981026 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981163 intergenic not near genes chrX_6_20980001 chrX_20980001 RAL-712 1881 chrX 21086133 21086155 chrX 21087162 21087184 jockey 6 1029 2.5 1.0 1.8 2.1 1051 chrX 21086133 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087184 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-712 1882 chrX 21358075 21358085 chrX 21358155 21358165 4 80 1.5 2.0 1.8 1.4 90 chrX 21358075 intergenic sol +,Sep1 + chrX 21358120 intergenic Sep1 +,sol + chrX 21358165 intergenic Sep1 +,sol + chrX_4_21355001 chrX_21355001 RAL-712 1883 chrX 21458691 21458716 chrX 21464127 21464151 Ivk 7 5436 3.0 1.5 2.2 2.2 5460 chrX 21458691 intergenic not near genes chrX 21461421 intergenic not near genes chrX 21464151 intergenic not near genes chrX_7_21460001 chrX_21460001 RAL-712 1884 chrX 21517001 21517020 chrX 21517080 21517099 7 78 2.5 4.0 3.2 1.7 98 chrX 21517001 intron CR45082 - chrX 21517050 intron CR45082 - chrX 21517099 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-712 1885 chrX 21581555 21581563 chrX 21581636 21581644 5 81 0.5 0.0 0.2 4.2 89 chrX 21581555 intergenic not near genes chrX 21581600 intergenic not near genes chrX 21581644 intergenic not near genes chrX_5_21580001 chrX_21580001 RAL-712 1886 chrX 21668265 21668285 chrX 21668350 21668370 5 85 9.0 5.5 7.2 0.6 105 chrX 21668265 intergenic not near genes chrX 21668318 intergenic not near genes chrX 21668370 intergenic not near genes chrX_5_21665001 chrX_21665001 RAL-712 1887 chrX 22478881 22478893 chrX 22479014 22479026 4 133 0.0 2.5 1.2 1.8 145 chrX 22478881 intron CG12576 - chrX 22478954 intron CG12576 - chrX 22479026 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-712 1888 chrX 22697505 22697524 chrX 22701802 22701821 Juan 4 4297 3.0 3.0 3.0 1.0 4316 chrX 22697505 intron CR44997 + chrX 22699663 intron CR44997 + chrX 22701821 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-712 1889 chrX 22771506 22771531 chrX 22774797 22774822 297 8 3291 1.0 2.0 1.5 3.2 3316 chrX 22771506 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774822 intron CR44997 + chrX_8_22770001 chrX_22770001 RAL-712 1890 chrX 22798774 22798797 chrX 22798890 22798913 4 116 2.5 0.0 1.2 1.8 139 chrX 22798774 intergenic not near genes chrX 22798844 intergenic not near genes chrX 22798913 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-712 1891 chrX 22811991 22812001 chrX 22816763 22816773 F-element 4 4772 1.5 1.0 1.2 1.8 4782 chrX 22811991 intergenic CG12446 - chrX 22814382 intergenic not near genes chrX 22816773 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-712 1892 chrX 22867983 22868007 chrX 22868096 22868121 5 114 1.0 0.0 0.5 3.3 138 chrX 22867983 exon CG42346 + chrX 22868052 intron CG42346 + chrX 22868121 intron CG42346 + chrX_5_22865001 chrX_22865001 RAL-712 1893 chrX 22870874 22870897 chrX 22870965 22870988 5 91 1.0 3.0 2.0 1.7 114 chrX 22870874 intron,3` UTR CG42346 +,CR43656 - chrX 22870931 intron,3` UTR CG42346 +,CR43656 - chrX 22870988 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-712 1894 chrX 22895724 22895752 chrX 22895842 22895870 13 118 3.5 2.0 2.8 3.4 146 chrX 22895724 intergenic not near genes chrX 22895797 intergenic not near genes chrX 22895870 intergenic not near genes chrX_13_22895001 chrX_22895001 RAL-712 1895 chrX 22987109 22987134 chrX 22989768 22989792 Burdock 10 2659 0.5 1.0 0.8 5.6 2683 chrX 22987109 intron,intron stnA -,stnB - chrX 22988450 intron,intron stnA -,stnB - chrX 22989792 intron,intron stnA -,stnB - chrX_10_22985001 chrX_22985001 RAL-712