SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46354 46378 chr2L 46432 46456 5 78 1.5 1.5 1.5 2.0 102 chr2L 46354 intron Cda5 - chr2L 46405 intron Cda5 - chr2L 46456 intron Cda5 - chr2L_5_45001 chr2L_45001 RAL-707 2 chr2L 47461 47492 chr2L 52565 52596 jockey 16 5105 3.5 4.0 3.8 3.3 5135 chr2L 47461 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_16_50001 chr2L_50001 RAL-707 3 chr2L 126938 126976 chr2L 127019 127057 10 81 4.5 2.0 3.2 2.4 119 chr2L 126938 intron,intron CG11455 +,CG3164 - chr2L 126998 intron,intron CG11455 +,CG3164 - chr2L 127057 intron,intron CG11455 +,CG3164 - chr2L_10_125001 chr2L_125001 RAL-707 4 chr2L 135592 135624 chr2L 135668 135700 11 75 2.5 2.5 2.5 3.1 108 chr2L 135592 intron,5` UTR CG11455 +,CR44185 + chr2L 135646 intron,5` UTR CG11455 +,CR44185 + chr2L 135700 intron,5` UTR CG11455 +,CR44185 + chr2L_11_135001 chr2L_135001 RAL-707 5 chr2L 220120 220145 chr2L 220330 220356 5 211 1.0 2.5 1.8 1.8 236 chr2L 220120 intron kis - chr2L 220238 intron kis - chr2L 220356 intron kis - chr2L_5_220001 chr2L_220001 RAL-707 6 chr2L 224715 224744 chr2L 224996 225025 14 281 1.5 1.5 1.5 5.6 310 chr2L 224715 intron kis - chr2L 224870 intron kis - chr2L 225025 intron kis - chr2L_14_220001 chr2L_220001 RAL-707 7 chr2L 287237 287265 chr2L 287318 287346 8 80 2.5 1.5 2.0 2.7 109 chr2L 287237 intron CG3625 - chr2L 287292 intron,3` UTR CG3625 -,Amnionless - chr2L 287346 intron,3` UTR CG3625 -,Amnionless - chr2L_8_285001 chr2L_285001 RAL-707 8 chr2L 347887 347911 chr2L 355386 355411 blood 10 7500 4.5 1.5 3.0 2.5 7524 chr2L 347887 3` UTR Plc21C + chr2L 351649 intron Plc21C + chr2L 355411 3` UTR Plc21C + chr2L_10_350001 chr2L_350001 RAL-707 9 chr2L 467360 467364 chr2L 467459 467462 6 99 4.0 7.5 5.8 0.9 102 chr2L 467360 intron CG4297 - chr2L 467411 intron CG4297 - chr2L 467462 intron CG4297 - chr2L_6_465001 chr2L_465001 RAL-707 10 chr2L 590623 590651 chr2L 590723 590751 8 101 3.0 4.5 3.8 1.7 128 chr2L 590623 intron Gsc - chr2L 590687 intron Gsc - chr2L 590751 intron Gsc - chr2L_8_590001 chr2L_590001 RAL-707 11 chr2L 597177 597195 chr2L 597297 597313 4 118 12.0 20.5 16.2 0.2 136 chr2L 597177 intergenic not near genes chr2L 597245 intergenic not near genes chr2L 597313 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-707 12 chr2L 664519 664530 chr2L 665013 665024 8 494 1.5 3.0 2.2 2.5 505 chr2L 664519 intron ds - chr2L 664772 intron ds - chr2L 665024 intron ds - chr2L_8_660001 chr2L_660001 RAL-707 13 chr2L 686926 686947 chr2L 695966 695987 roo 6 9040 2.5 3.5 3.0 1.5 9061 chr2L 686926 intron ds - chr2L 691456 intron ds - chr2L 695987 intron ds - chr2L_6_690001 chr2L_690001 RAL-707 14 chr2L 769432 769467 chr2L 769509 769545 8 78 2.0 0.5 1.2 3.6 113 chr2L 769432 intergenic not near genes chr2L 769488 intergenic not near genes chr2L 769545 intergenic not near genes chr2L_8_765001 chr2L_765001 RAL-707 15 chr2L 770464 770494 chr2L 772245 772275 Bari1 12 1781 2.0 3.5 2.8 3.2 1811 chr2L 770464 intergenic not near genes chr2L 771370 intergenic not near genes chr2L 772275 intergenic CR44614 + chr2L_12_770001 chr2L_770001 RAL-707 16 chr2L 971911 971937 chr2L 972002 972028 5 91 3.0 5.5 4.2 1.0 117 chr2L 971911 intergenic not near genes chr2L 971970 intergenic not near genes chr2L 972028 intergenic not near genes chr2L_5_970001 chr2L_970001 RAL-707 17 chr2L 1030608 1030620 chr2L 1030936 1030948 7 328 0.5 4.5 2.5 2.0 340 chr2L 1030608 intron IA-2 - chr2L 1030778 intron IA-2 - chr2L 1030948 intron IA-2 - chr2L_7_1030001 chr2L_1030001 RAL-707 18 chr2L 1137658 1137673 chr2L 1137838 1137853 7 180 3.5 1.0 2.2 2.2 195 chr2L 1137658 intron CG4577 + chr2L 1137756 intron CG4577 + chr2L 1137853 intron CG4577 + chr2L_7_1135001 chr2L_1135001 RAL-707 19 chr2L 1156858 1156894 chr2L 1156963 1156999 7 105 1.5 0.5 1.0 3.5 141 chr2L 1156858 intron capt - chr2L 1156928 intron capt - chr2L 1156999 intron capt - chr2L_7_1155001 chr2L_1155001 RAL-707 20 chr2L 1220131 1220158 chr2L 1227597 1227624 blood 5 7466 4.5 1.5 3.0 1.2 7493 chr2L 1220131 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227624 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-707 21 chr2L 1331071 1331094 chr2L 1331148 1331171 5 77 0.0 1.5 0.8 2.8 100 chr2L 1331071 intergenic not near genes chr2L 1331121 intergenic not near genes chr2L 1331171 intergenic not near genes chr2L_5_1330001 chr2L_1330001 RAL-707 22 chr2L 1478961 1478985 chr2L 1479056 1479079 8 93 2.0 2.0 2.0 2.7 118 chr2L 1478961 intergenic not near genes chr2L 1479020 intergenic not near genes chr2L 1479079 intergenic not near genes chr2L_8_1475001 chr2L_1475001 RAL-707 23 chr2L 1513084 1513119 chr2L 1513188 1513223 8 103 2.0 4.5 3.2 1.9 139 chr2L 1513084 intergenic not near genes chr2L 1513154 intergenic not near genes chr2L 1513223 intergenic not near genes chr2L_8_1510001 chr2L_1510001 RAL-707 24 chr2L 1570689 1570717 chr2L 1573561 1573589 F-element 5 2872 3.0 2.5 2.8 1.3 2900 chr2L 1570689 intron haf + chr2L 1572139 intron haf + chr2L 1573589 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-707 25 chr2L 1591862 1591890 chr2L 1591946 1591974 8 83 1.5 1.5 1.5 3.2 112 chr2L 1591862 intron haf + chr2L 1591918 intron haf + chr2L 1591974 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-707 26 chr2L 1678957 1679004 chr2L 1686440 1686469 blood 5 7472 0.0 4.0 2.0 1.7 7512 chr2L 1678957 intron chinmo + chr2L 1682713 intron chinmo + chr2L 1686469 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-707 27 chr2L 1699096 1699123 chr2L 1699186 1699211 7 90 1.5 2.0 1.8 2.5 115 chr2L 1699096 3` UTR chinmo + chr2L 1699154 3` UTR chinmo + chr2L 1699211 3` UTR chinmo + chr2L_7_1695001 chr2L_1695001 RAL-707 28 chr2L 1711357 1711389 chr2L 1711681 1711713 mdg3 13 324 2.0 2.5 2.2 4.1 356 chr2L 1711357 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711713 3` UTR frtz - chr2L_13_1710001 chr2L_1710001 RAL-707 29 chr2L 1721822 1721852 chr2L 1721906 1721936 10 84 0.5 1.0 0.8 5.6 114 chr2L 1721822 intron Rim2 - chr2L 1721879 intron Rim2 - chr2L 1721936 intron Rim2 - chr2L_10_1720001 chr2L_1720001 RAL-707 30 chr2L 1883419 1883444 chr2L 1884001 1884024 6 580 1.5 1.5 1.5 2.4 605 chr2L 1883419 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884024 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-707 31 chr2L 1946727 1946761 chr2L 1946803 1946837 9 76 1.0 1.0 1.0 4.5 110 chr2L 1946727 5` UTR CG33673 - chr2L 1946782 intergenic CG33673 - chr2L 1946837 intergenic CG33673 - chr2L_9_1945001 chr2L_1945001 RAL-707 32 chr2L 1948622 1948657 chr2L 1948729 1948764 6 107 0.0 1.5 0.8 3.3 142 chr2L 1948622 intergenic not near genes chr2L 1948693 intergenic not near genes chr2L 1948764 intergenic not near genes chr2L_6_1945001 chr2L_1945001 RAL-707 33 chr2L 2047802 2047832 chr2L 2047997 2048027 9 195 4.0 0.0 2.0 3.0 225 chr2L 2047802 3` UTR Kebab + chr2L 2047914 3` UTR Kebab + chr2L 2048027 3` UTR Kebab + chr2L_9_2045001 chr2L_2045001 RAL-707 34 chr2L 2083981 2084008 chr2L 2084275 2084303 9 295 1.5 6.0 3.8 1.9 322 chr2L 2083981 intron,5` UTR dpr3 -,CR44055 + chr2L 2084142 intron,5` UTR dpr3 -,CR44055 + chr2L 2084303 intron,5` UTR dpr3 -,CR44055 + chr2L_9_2080001 chr2L_2080001 RAL-707 35 chr2L 2100384 2100404 chr2L 2109535 2109555 roo 8 9151 2.5 2.0 2.2 2.5 9171 chr2L 2100384 intron dpr3 - chr2L 2104970 intron dpr3 - chr2L 2109555 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-707 36 chr2L 2112121 2112144 chr2L 2119783 2119805 opus 7 7662 3.0 3.5 3.2 1.7 7684 chr2L 2112121 intergenic not near genes chr2L 2115963 intergenic not near genes chr2L 2119805 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-707 37 chr2L 2290602 2290616 chr2L 2290678 2290692 7 76 2.5 6.5 4.5 1.3 90 chr2L 2290602 exon robl22E - chr2L 2290647 intron robl22E - chr2L 2290692 intron robl22E - chr2L_7_2290001 chr2L_2290001 RAL-707 38 chr2L 2294042 2294075 chr2L 2299247 2299280 copia 6 5205 0.0 3.5 1.8 2.1 5238 chr2L 2294042 intergenic not near genes chr2L 2296661 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-707 39 chr2L 2303505 2303532 chr2L 2303588 2303615 6 83 3.5 1.0 2.2 1.9 110 chr2L 2303505 intergenic not near genes chr2L 2303560 intergenic not near genes chr2L 2303615 intergenic not near genes chr2L_6_2300001 chr2L_2300001 RAL-707 40 chr2L 2318883 2318907 chr2L 2318956 2318984 12 76 3.5 3.5 3.5 2.7 101 chr2L 2318883 intron,intron CG9967 -,eys + chr2L 2318934 intron,intron CG9967 -,eys + chr2L 2318984 intron,intron CG9967 -,eys + chr2L_12_2315001 chr2L_2315001 RAL-707 41 chr2L 2372363 2372401 chr2L 2372449 2372481 4 84 0.0 1.5 0.8 2.2 118 chr2L 2372363 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372481 3` UTR CG3609 - chr2L_4_2370001 chr2L_2370001 RAL-707 42 chr2L 2402320 2402341 chr2L 2402431 2402452 4 111 4.0 4.5 4.2 0.8 132 chr2L 2402320 intron VGlut + chr2L 2402386 intron VGlut + chr2L 2402452 intron VGlut + chr2L_4_2400001 chr2L_2400001 RAL-707 43 chr2L 2466398 2466410 chr2L 2466491 2466503 4 93 2.5 0.0 1.2 1.8 105 chr2L 2466398 intergenic not near genes chr2L 2466450 intergenic not near genes chr2L 2466503 intergenic not near genes chr2L_4_2465001 chr2L_2465001 RAL-707 44 chr2L 2543494 2543511 chr2L 2543602 2543619 5 108 1.5 1.5 1.5 2.0 125 chr2L 2543494 intergenic not near genes chr2L 2543556 intergenic not near genes chr2L 2543619 intergenic not near genes chr2L_5_2540001 chr2L_2540001 RAL-707 45 chr2L 2587818 2587848 chr2L 2587897 2587927 7 79 1.0 1.0 1.0 3.5 109 chr2L 2587818 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587927 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-707 46 chr2L 2618041 2618064 chr2L 2618119 2618143 4 78 2.0 4.0 3.0 1.0 102 chr2L 2618041 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618143 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-707 47 chr2L 2661201 2661233 chr2L 2663039 2663069 I-element 8 1837 0.5 2.0 1.2 3.6 1868 chr2L 2661201 intergenic not near genes chr2L 2662135 intergenic not near genes chr2L 2663069 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-707 48 chr2L 2667628 2667652 chr2L 2667707 2667731 7 79 5.0 3.0 4.0 1.4 103 chr2L 2667628 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667731 intergenic not near genes chr2L_7_2665001 chr2L_2665001 RAL-707 49 chr2L 2713515 2713547 chr2L 2713613 2713646 12 99 3.5 6.0 4.8 2.1 131 chr2L 2713515 intron CG31690 + chr2L 2713580 intron CG31690 + chr2L 2713646 intron CG31690 + chr2L_12_2710001 chr2L_2710001 RAL-707 50 chr2L 2724420 2724426 chr2L 2724496 2724502 4 76 2.0 2.0 2.0 1.3 82 chr2L 2724420 intergenic not near genes chr2L 2724461 intergenic not near genes chr2L 2724502 intergenic not near genes chr2L_4_2720001 chr2L_2720001 RAL-707 51 chr2L 2800617 2800619 chr2L 2800700 2800701 4 83 1.0 0.0 0.5 2.7 84 chr2L 2800617 intergenic not near genes chr2L 2800659 intergenic not near genes chr2L 2800701 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-707 52 chr2L 2831084 2831091 chr2L 2831190 2831197 5 106 4.0 0.0 2.0 1.7 113 chr2L 2831084 intergenic not near genes chr2L 2831140 intergenic not near genes chr2L 2831197 intergenic not near genes chr2L_5_2830001 chr2L_2830001 RAL-707 53 chr2L 2885374 2885383 chr2L 2885451 2885460 6 77 5.0 2.5 3.8 1.2 86 chr2L 2885374 intron NTPase - chr2L 2885417 intron NTPase - chr2L 2885460 intron NTPase - chr2L_6_2885001 chr2L_2885001 RAL-707 54 chr2L 3046431 3046438 chr2L 3046578 3046585 4 148 4.0 0.0 2.0 1.3 154 chr2L 3046431 intron v(2)k05816 + chr2L 3046508 intron v(2)k05816 + chr2L 3046585 intron v(2)k05816 + chr2L_4_3045001 chr2L_3045001 RAL-707 55 chr2L 3073019 3073029 chr2L 3078241 3078252 copia 6 5223 0.5 3.0 1.8 2.1 5233 chr2L 3073019 intron toc - chr2L 3075636 intron toc - chr2L 3078252 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-707 56 chr2L 3108877 3108898 chr2L 3108954 3108975 8 77 2.5 3.5 3.0 2.0 98 chr2L 3108877 intron toc - chr2L 3108926 intron toc - chr2L 3108975 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-707 57 chr2L 3147277 3147308 chr2L 3147354 3147381 14 76 4.0 5.0 4.5 2.5 104 chr2L 3147277 3` UTR Mad - chr2L 3147329 3` UTR Mad - chr2L 3147381 3` UTR Mad - chr2L_14_3145001 chr2L_3145001 RAL-707 58 chr2L 3192209 3192237 chr2L 3192320 3192348 7 111 1.0 4.0 2.5 2.0 139 chr2L 3192209 exon CG34393 - chr2L 3192278 intron CG34393 - chr2L 3192348 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-707 59 chr2L 3202741 3202770 chr2L 3210170 3210198 mdg1 8 7429 0.5 3.5 2.0 2.7 7457 chr2L 3202741 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210198 intergenic CR45336 + chr2L_8_3205001 chr2L_3205001 RAL-707 60 chr2L 3233189 3233203 chr2L 3237210 3237224 6 4021 1.0 2.0 1.5 2.4 4035 chr2L 3233189 intergenic not near genes chr2L 3235206 intergenic not near genes chr2L 3237224 intergenic not near genes chr2L_6_3235001 chr2L_3235001 RAL-707 61 chr2L 3251498 3251526 chr2L 3259063 3259091 springer 4 7565 2.0 4.5 3.2 1.0 7593 chr2L 3251498 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-707 62 chr2L 3323257 3323284 chr2L 3323364 3323391 7 106 1.5 2.5 2.0 2.3 134 chr2L 3323257 intergenic CG8837 + chr2L 3323324 intergenic CG8837 + chr2L 3323391 intergenic CG8837 + chr2L_7_3320001 chr2L_3320001 RAL-707 63 chr2L 3367015 3367043 chr2L 3367165 3367193 8 150 3.5 6.0 4.8 1.4 178 chr2L 3367015 intron CG34394 - chr2L 3367104 intron CG34394 - chr2L 3367193 intron CG34394 - chr2L_8_3365001 chr2L_3365001 RAL-707 64 chr2L 3388600 3388627 chr2L 3388841 3388868 pogo 5 241 3.0 2.0 2.5 1.4 268 chr2L 3388600 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388868 intergenic CG42460 -,CR44791 + chr2L_5_3385001 chr2L_3385001 RAL-707 65 chr2L 3393783 3393819 chr2L 3393868 3393894 12 83 3.0 3.5 3.2 2.9 111 chr2L 3393783 intergenic not near genes chr2L 3393838 intergenic not near genes chr2L 3393894 intergenic not near genes chr2L_12_3390001 chr2L_3390001 RAL-707 66 chr2L 3582878 3582911 chr2L 3582955 3582988 14 77 1.5 4.0 2.8 3.7 110 chr2L 3582878 intergenic not near genes chr2L 3582933 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_14_3580001 chr2L_3580001 RAL-707 67 chr2L 3632269 3632274 chr2L 3632345 3632350 5 76 0.0 7.5 3.8 1.0 81 chr2L 3632269 intron for - chr2L 3632310 intron for - chr2L 3632350 intron for - chr2L_5_3630001 chr2L_3630001 RAL-707 68 chr2L 3634100 3634133 chr2L 3634182 3634215 10 82 2.0 4.0 3.0 2.5 115 chr2L 3634100 intron for - chr2L 3634158 intron for - chr2L 3634215 intron for - chr2L_10_3630001 chr2L_3630001 RAL-707 69 chr2L 3702912 3702931 chr2L 3702998 3703017 4 86 0.0 3.0 1.5 1.6 105 chr2L 3702912 5` UTR CR44311 + chr2L 3702964 intergenic CR44311 + chr2L 3703017 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-707 70 chr2L 3782203 3782232 chr2L 3786513 3786542 10 4310 19.5 16.5 18.0 0.5 4339 chr2L 3782203 exon bowl + chr2L 3784372 intergenic bowl + chr2L 3786542 intergenic CG31958 + chr2L_10_3780001 chr2L_3780001 RAL-707 71 chr2L 3950083 3950105 chr2L 3950159 3950181 10 76 0.5 1.0 0.8 5.6 98 chr2L 3950083 intron fred - chr2L 3950132 intron fred - chr2L 3950181 intron fred - chr2L_10_3950001 chr2L_3950001 RAL-707 72 chr2L 4166375 4166410 chr2L 4166458 4166493 8 83 0.5 3.5 2.0 2.7 118 chr2L 4166375 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166493 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-707 73 chr2L 4224400 4224428 chr2L 4224479 4224507 5 79 0.0 1.5 0.8 2.8 107 chr2L 4224400 intergenic CG3702 - chr2L 4224454 intergenic CG3702 - chr2L 4224507 intergenic CG3702 - chr2L_5_4220001 chr2L_4220001 RAL-707 74 chr2L 4285713 4285736 chr2L 4285793 4285816 9 80 4.0 3.0 3.5 2.0 103 chr2L 4285713 intron tutl + chr2L 4285764 intron tutl + chr2L 4285816 intron tutl + chr2L_9_4285001 chr2L_4285001 RAL-707 75 chr2L 4373713 4373733 chr2L 4373812 4373833 8 100 5.5 0.0 2.8 2.1 120 chr2L 4373713 intron Traf4 + chr2L 4373773 intron Traf4 + chr2L 4373833 intron Traf4 + chr2L_8_4370001 chr2L_4370001 RAL-707 76 chr2L 4601708 4601736 chr2L 4609149 4609177 mdg1 8 7441 3.5 3.0 3.2 1.9 7469 chr2L 4601708 intron dp - chr2L 4605442 intron dp - chr2L 4609177 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-707 77 chr2L 4622997 4623031 chr2L 4624788 4624821 8 1790 17.5 17.0 17.2 0.4 1824 chr2L 4622997 intergenic not near genes chr2L 4623909 intergenic not near genes chr2L 4624821 intergenic not near genes chr2L_8_4620001 chr2L_4620001 RAL-707 78 chr2L 4622510 4622518 chr2L 4624791 4624799 6 2281 17.0 18.0 17.5 0.3 2289 chr2L 4622510 intergenic not near genes chr2L 4623654 intergenic not near genes chr2L 4624799 intergenic not near genes chr2L_6_4620001 chr2L_4620001 RAL-707 79 chr2L 4676859 4676884 chr2L 4676938 4676963 7 79 4.5 4.5 4.5 1.3 104 chr2L 4676859 intergenic not near genes chr2L 4676911 intergenic not near genes chr2L 4676963 intergenic not near genes chr2L_7_4675001 chr2L_4675001 RAL-707 80 chr2L 4787042 4787075 chr2L 4787226 4787256 11 184 1.0 1.5 1.2 5.0 214 chr2L 4787042 intron CG15630 - chr2L 4787149 intron CG15630 - chr2L 4787256 intron CG15630 - chr2L_11_4785001 chr2L_4785001 RAL-707 81 chr2L 4841070 4841098 chr2L 4841146 4841172 8 76 8.0 2.5 5.2 1.3 102 chr2L 4841070 intron CG12194 + chr2L 4841121 intron CG12194 + chr2L 4841172 exon CG12194 + chr2L_8_4840001 chr2L_4840001 RAL-707 82 chr2L 4869467 4869498 chr2L 4869547 4869578 8 80 1.5 2.0 1.8 2.9 111 chr2L 4869467 intron pog + chr2L 4869522 intron pog + chr2L 4869578 intron pog + chr2L_8_4865001 chr2L_4865001 RAL-707 83 chr2L 4886885 4886914 chr2L 4886979 4887008 8 94 1.5 3.0 2.2 2.5 123 chr2L 4886885 intergenic not near genes chr2L 4886946 intergenic not near genes chr2L 4887008 intergenic not near genes chr2L_8_4885001 chr2L_4885001 RAL-707 84 chr2L 5117297 5117319 chr2L 5117379 5117400 8 82 2.0 2.0 2.0 2.7 103 chr2L 5117297 intron Msp300 + chr2L 5117348 intron Msp300 + chr2L 5117400 intron Msp300 + chr2L_8_5115001 chr2L_5115001 RAL-707 85 chr2L 5242870 5242899 chr2L 5243058 5243089 11 189 3.0 3.5 3.2 2.6 219 chr2L 5242870 intron tkv - chr2L 5242980 intron tkv - chr2L 5243089 intron tkv - chr2L_11_5240001 chr2L_5240001 RAL-707 86 chr2L 5242936 5242937 chr2L 16217660 16217660 10 10974724 0.0 11.5 5.8 1.5 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_10_10730001 chr2L_10730001 RAL-707 87 chr2L 5468701 5468726 chr2L 5468783 5468808 5 82 3.0 3.0 3.0 1.2 107 chr2L 5468701 intergenic not near genes chr2L 5468754 intergenic not near genes chr2L 5468808 intergenic not near genes chr2L_5_5465001 chr2L_5465001 RAL-707 88 chr2L 5492005 5492038 chr2L 5492083 5492116 13 78 1.0 2.0 1.5 5.2 111 chr2L 5492005 intergenic not near genes chr2L 5492060 intergenic not near genes chr2L 5492116 intergenic not near genes chr2L_13_5490001 chr2L_5490001 RAL-707 89 chr2L 5508528 5508562 chr2L 5508604 5508638 12 76 1.5 1.0 1.2 5.5 110 chr2L 5508528 intergenic not near genes chr2L 5508583 intergenic not near genes chr2L 5508638 intergenic not near genes chr2L_12_5505001 chr2L_5505001 RAL-707 90 chr2L 5582194 5582222 chr2L 5582270 5582298 11 75 2.5 2.0 2.2 3.4 104 chr2L 5582194 intergenic not near genes chr2L 5582246 intergenic not near genes chr2L 5582298 intergenic not near genes chr2L_11_5580001 chr2L_5580001 RAL-707 91 chr2L 5611809 5611834 chr2L 5612169 5612194 8 360 2.5 5.0 3.8 1.7 385 chr2L 5611809 intron CG14010 - chr2L 5612002 intron CG14010 - chr2L 5612194 intron CG14010 - chr2L_8_5610001 chr2L_5610001 RAL-707 92 chr2L 5676981 5677014 chr2L 5677064 5677097 10 83 0.0 1.0 0.5 6.7 116 chr2L 5676981 intergenic not near genes chr2L 5677039 intergenic not near genes chr2L 5677097 intergenic not near genes chr2L_10_5675001 chr2L_5675001 RAL-707 93 chr2L 5695875 5695891 chr2L 5695967 5695983 4 92 1.5 6.0 3.8 0.8 108 chr2L 5695875 intergenic not near genes chr2L 5695929 intergenic not near genes chr2L 5695983 intergenic not near genes chr2L_4_5695001 chr2L_5695001 RAL-707 94 chr2L 5762381 5762406 chr2L 5762504 5762529 4 123 2.0 2.0 2.0 1.3 148 chr2L 5762381 3` UTR CG11030 + chr2L 5762455 intergenic CG11030 +,obst-E - chr2L 5762529 intergenic obst-E -,CG11030 + chr2L_4_5760001 chr2L_5760001 RAL-707 95 chr2L 5790044 5790054 chr2L 5790123 5790133 5 78 2.5 2.5 2.5 1.4 89 chr2L 5790044 intron CG9171 - chr2L 5790088 intron CG9171 - chr2L 5790133 intron CG9171 - chr2L_5_5790001 chr2L_5790001 RAL-707 96 chr2L 5806054 5806074 chr2L 5806135 5806155 4 81 2.0 1.0 1.5 1.6 101 chr2L 5806054 intron CG11034 + chr2L 5806104 intron CG11034 + chr2L 5806155 intron CG11034 + chr2L_4_5805001 chr2L_5805001 RAL-707 97 chr2L 5827716 5827737 chr2L 5836724 5836745 roo 6 9007 4.5 4.5 4.5 1.1 9029 chr2L 5827716 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-707 98 chr2L 5904464 5904475 chr2L 5904544 5904554 5 80 1.0 0.0 0.5 3.3 90 chr2L 5904464 intron CG9021 - chr2L 5904509 intron CG9021 - chr2L 5904554 intron CG9021 - chr2L_5_5900001 chr2L_5900001 RAL-707 99 chr2L 5931317 5931329 chr2L 5931429 5931440 4 112 1.0 1.5 1.2 1.8 123 chr2L 5931317 intron dsf + chr2L 5931378 intron dsf + chr2L 5931440 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-707 100 chr2L 6021621 6021642 chr2L 6021699 6021716 14 77 4.0 0.0 2.0 4.7 95 chr2L 6021621 exon CG13996 + chr2L 6021668 exon CG13996 + chr2L 6021716 3` UTR CG13996 + chr2L_14_6020001 chr2L_6020001 RAL-707 101 chr2L 6026919 6026943 chr2L 6027003 6027027 10 84 4.5 1.0 2.8 2.6 108 chr2L 6026919 intron CG9109 - chr2L 6026973 intron CG9109 - chr2L 6027027 intron CG9109 - chr2L_10_6025001 chr2L_6025001 RAL-707 102 chr2L 6136573 6136580 chr2L 6136670 6136677 4 97 0.0 3.0 1.5 1.6 104 chr2L 6136573 intergenic not near genes chr2L 6136625 intergenic not near genes chr2L 6136677 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-707 103 chr2L 6185439 6185470 chr2L 6185517 6185548 6 78 1.5 3.0 2.2 1.9 109 chr2L 6185439 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-707 104 chr2L 6230307 6230318 chr2L 6230408 6230420 4 101 2.0 4.0 3.0 1.0 113 chr2L 6230307 intergenic not near genes chr2L 6230364 intergenic not near genes chr2L 6230420 intergenic not near genes chr2L_4_6230001 chr2L_6230001 RAL-707 105 chr2L 6272138 6272158 chr2L 6272222 6272242 5 84 4.0 0.5 2.2 1.6 104 chr2L 6272138 intron Ddr + chr2L 6272190 intron Ddr + chr2L 6272242 intron Ddr + chr2L_5_6270001 chr2L_6270001 RAL-707 106 chr2L 6283953 6283975 chr2L 6284064 6284086 10 111 2.5 2.5 2.5 2.9 133 chr2L 6283953 intron Ddr + chr2L 6284020 intron Ddr + chr2L 6284086 intron Ddr + chr2L_10_6280001 chr2L_6280001 RAL-707 107 chr2L 6308311 6308336 chr2L 6308394 6308419 7 83 3.5 4.0 3.8 1.5 108 chr2L 6308311 intron Ddr + chr2L 6308365 intron Ddr + chr2L 6308419 intron,3` UTR Ddr +,CG43922 - chr2L_7_6305001 chr2L_6305001 RAL-707 108 chr2L 6318735 6318757 chr2L 6318889 6318911 7 154 2.0 3.0 2.5 2.0 176 chr2L 6318735 intron Ddr + chr2L 6318823 intron Ddr + chr2L 6318911 intron Ddr + chr2L_7_6315001 chr2L_6315001 RAL-707 109 chr2L 6321473 6321487 chr2L 6321547 6321563 6 75 1.0 4.5 2.8 1.6 90 chr2L 6321473 intron Ddr + chr2L 6321518 intron Ddr + chr2L 6321563 intron Ddr + chr2L_6_6320001 chr2L_6320001 RAL-707 110 chr2L 6343308 6343335 chr2L 6343403 6343430 10 95 3.0 2.0 2.5 2.9 122 chr2L 6343308 intron Cpr + chr2L 6343369 intron Cpr + chr2L 6343430 intron Cpr + chr2L_10_6340001 chr2L_6340001 RAL-707 111 chr2L 6363151 6363178 chr2L 6366071 6366100 Burdock 5 2921 4.0 0.5 2.2 1.6 2949 chr2L 6363151 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-707 112 chr2L 6426856 6426888 chr2L 6445116 6445148 roo 11 18260 7.0 3.5 5.2 1.8 18292 chr2L 6426856 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-707 113 chr2L 6470678 6470701 chr2L 6470771 6470794 9 93 1.0 1.5 1.2 4.1 116 chr2L 6470678 intron mmy - chr2L 6470736 intron mmy - chr2L 6470794 intron mmy - chr2L_9_6470001 chr2L_6470001 RAL-707 114 chr2L 6514125 6514152 chr2L 6514203 6514230 9 77 2.5 2.5 2.5 2.6 105 chr2L 6514125 intron CG31637 + chr2L 6514178 intron CG31637 + chr2L 6514230 intron CG31637 + chr2L_9_6510001 chr2L_6510001 RAL-707 115 chr2L 6544371 6544390 chr2L 6544463 6544482 6 92 4.0 2.0 3.0 1.5 111 chr2L 6544371 intron eya - chr2L 6544426 intron eya - chr2L 6544482 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-707 116 chr2L 6578341 6578371 chr2L 6578687 6578717 8 346 3.5 6.0 4.8 1.4 376 chr2L 6578341 intron CG11319 - chr2L 6578529 intron CG11319 - chr2L 6578717 intron CG11319 - chr2L_8_6575001 chr2L_6575001 RAL-707 117 chr2L 6590103 6590123 chr2L 6590180 6590201 6 77 1.5 3.0 2.2 1.9 98 chr2L 6590103 intron CG11319 - chr2L 6590152 intron CG11319 - chr2L 6590201 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-707 118 chr2L 6626891 6626920 chr2L 6626971 6627005 11 84 4.5 3.5 4.0 2.2 114 chr2L 6626891 intron Oatp26F - chr2L 6626948 intron Oatp26F - chr2L 6627005 intron Oatp26F - chr2L_11_6625001 chr2L_6625001 RAL-707 119 chr2L 6655526 6655546 chr2L 6655888 6655906 6 362 2.5 3.0 2.8 1.6 380 chr2L 6655526 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655906 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-707 120 chr2L 6771984 6772022 chr2L 6772071 6772109 6 87 2.0 1.0 1.5 2.4 125 chr2L 6771984 intron CG11321 - chr2L 6772046 intron CG11321 - chr2L 6772109 intron CG11321 - chr2L_6_6770001 chr2L_6770001 RAL-707 121 chr2L 6850390 6850413 chr2L 6850473 6850496 6 83 3.5 3.5 3.5 1.3 106 chr2L 6850390 intergenic not near genes chr2L 6850443 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-707 122 chr2L 6872627 6872646 chr2L 6872706 6872729 5 82 3.0 3.5 3.2 1.2 102 chr2L 6872627 intergenic CR44914 +,CR44915 - chr2L 6872678 intergenic CR44914 +,CR44915 - chr2L 6872729 5` UTR CR44914 + chr2L_5_6870001 chr2L_6870001 RAL-707 123 chr2L 6876785 6876805 chr2L 6882976 6882996 diver 5 6191 5.0 6.0 5.5 0.8 6211 chr2L 6876785 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6882996 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-707 124 chr2L 7179108 7179139 chr2L 7179190 7179223 8 84 2.0 2.0 2.0 2.7 115 chr2L 7179108 intergenic not near genes chr2L 7179166 intergenic not near genes chr2L 7179223 intergenic not near genes chr2L_8_7175001 chr2L_7175001 RAL-707 125 chr2L 7244724 7244753 chr2L 7244849 7244876 7 125 2.5 3.5 3.0 1.8 152 chr2L 7244724 intron Ndae1 - chr2L 7244800 intron Ndae1 - chr2L 7244876 intron Ndae1 - chr2L_7_7240001 chr2L_7240001 RAL-707 126 chr2L 7306384 7306397 chr2L 7306461 7306475 6 78 5.0 0.0 2.5 1.7 91 chr2L 7306384 intergenic not near genes chr2L 7306430 intergenic not near genes chr2L 7306475 intergenic not near genes chr2L_6_7305001 chr2L_7305001 RAL-707 127 chr2L 7343336 7343354 chr2L 7350452 7350470 roo 4 7115 4.0 5.5 4.8 0.7 7134 chr2L 7343336 intron Wnt6 + chr2L 7346903 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-707 128 chr2L 7399306 7399334 chr2L 7399679 7399707 8 373 0.5 3.5 2.0 2.7 401 chr2L 7399306 intergenic not near genes chr2L 7399506 intergenic not near genes chr2L 7399707 intergenic not near genes chr2L_8_7395001 chr2L_7395001 RAL-707 129 chr2L 7439384 7439409 chr2L 7439504 7439529 9 120 3.0 0.0 1.5 3.6 145 chr2L 7439384 intron CG5973 + chr2L 7439456 intron CG5973 + chr2L 7439529 intron CG5973 + chr2L_9_7435001 chr2L_7435001 RAL-707 130 chr2L 7502736 7502767 chr2L 7502812 7502843 8 76 1.5 3.0 2.2 2.5 107 chr2L 7502736 intron RapGAP1 - chr2L 7502790 intron RapGAP1 - chr2L 7502843 intron RapGAP1 - chr2L_8_7500001 chr2L_7500001 RAL-707 131 chr2L 7555226 7555230 chr2L 7555303 7555307 5 77 0.0 3.0 1.5 2.0 81 chr2L 7555226 intron RapGAP1 - chr2L 7555266 intron RapGAP1 - chr2L 7555307 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-707 132 chr2L 7572463 7572495 chr2L 7572613 7572645 8 150 3.0 2.0 2.5 2.3 182 chr2L 7572463 intron RapGAP1 - chr2L 7572554 intron RapGAP1 - chr2L 7572645 intron RapGAP1 - chr2L_8_7570001 chr2L_7570001 RAL-707 133 chr2L 7609533 7609751 chr2L 7609628 7609828 9 83 1.0 2.0 1.5 3.6 295 chr2L 7609533 intron CG6739 + chr2L 7609680 intron CG6739 + chr2L 7609828 intron CG6739 + chr2L_9_7605001 chr2L_7605001 RAL-707 134 chr2L 7679147 7679163 chr2L 7679346 7679362 4 199 4.0 3.0 3.5 0.9 215 chr2L 7679147 intron Myo28B1 + chr2L 7679254 intron Myo28B1 + chr2L 7679362 intron Myo28B1 + chr2L_4_7675001 chr2L_7675001 RAL-707 135 chr2L 7718754 7718787 chr2L 7719063 7719096 4 308 4.5 1.5 3.0 1.0 342 chr2L 7718754 exon CG13793 - chr2L 7718925 intron CG13793 - chr2L 7719096 exon CG13793 - chr2L_4_7715001 chr2L_7715001 RAL-707 136 chr2L 7867566 7867603 chr2L 7867660 7867697 12 94 2.0 0.5 1.2 5.5 131 chr2L 7867566 intron Proc - chr2L 7867632 intron Proc - chr2L 7867697 intron Proc - chr2L_12_7865001 chr2L_7865001 RAL-707 137 chr2L 7959041 7959066 chr2L 7960452 7960477 pogo 5 1411 3.0 0.5 1.8 1.8 1436 chr2L 7959041 intron Snoo - chr2L 7959759 intron Snoo - chr2L 7960477 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-707 138 chr2L 8018826 8018834 chr2L 8023610 8023618 Doc 6 4784 0.0 5.5 2.8 1.6 4792 chr2L 8018826 intron Tg + chr2L 8021222 intron Tg + chr2L 8023618 intron Tg + chr2L_6_8020001 chr2L_8020001 RAL-707 139 chr2L 8044067 8044089 chr2L 8044174 8044196 8 107 2.0 0.5 1.2 3.6 129 chr2L 8044067 exon CG7466 + chr2L 8044132 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-707 140 chr2L 8171281 8171297 chr2L 8171362 8171378 5 81 0.0 0.5 0.2 4.2 97 chr2L 8171281 intron Piezo + chr2L 8171330 intron Piezo + chr2L 8171378 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-707 141 chr2L 8286293 8286327 chr2L 8286380 8286414 13 87 3.0 3.0 3.0 3.2 121 chr2L 8286293 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286414 intron Btk29A - chr2L_13_8285001 chr2L_8285001 RAL-707 142 chr2L 8349612 8349630 chr2L 8349717 8349735 11 105 1.0 0.5 0.8 6.1 123 chr2L 8349612 intron CG7778 + chr2L 8349674 intron CG7778 + chr2L 8349735 intron CG7778 + chr2L_11_8345001 chr2L_8345001 RAL-707 143 chr2L 8452418 8452447 chr2L 8461589 8461618 roo 5 9171 3.5 1.0 2.2 1.6 9200 chr2L 8452418 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461618 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-707 144 chr2L 8723115 8723144 chr2L 8731492 8731521 Tirant 11 8377 1.5 2.5 2.0 3.7 8406 chr2L 8723115 intron raw - chr2L 8727318 intron raw - chr2L 8731521 intron raw - chr2L_11_8725001 chr2L_8725001 RAL-707 145 chr2L 8786552 8786578 chr2L 8786639 8786662 7 86 0.0 3.0 1.5 2.8 110 chr2L 8786552 intergenic not near genes chr2L 8786607 intergenic not near genes chr2L 8786662 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-707 146 chr2L 8788753 8788783 chr2L 8788844 8788874 5 91 0.5 1.0 0.8 2.8 121 chr2L 8788753 intergenic not near genes chr2L 8788814 intergenic not near genes chr2L 8788874 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-707 147 chr2L 8993217 8993242 chr2L 8993318 8993343 10 102 21.0 18.0 19.5 0.5 126 chr2L 8993217 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993343 3` UTR CG9555 + chr2L_10_8990001 chr2L_8990001 RAL-707 148 chr2L 9000279 9000311 chr2L 9007789 9007821 roo 11 7510 6.0 1.5 3.8 2.3 7542 chr2L 9000279 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007821 intergenic not near genes chr2L_11_9000001 chr2L_9000001 RAL-707 149 chr2L 9023153 9023185 chr2L 9023249 9023282 8 97 4.0 6.0 5.0 1.3 129 chr2L 9023153 intergenic not near genes chr2L 9023218 intergenic not near genes chr2L 9023282 intergenic not near genes chr2L_8_9020001 chr2L_9020001 RAL-707 150 chr2L 9040042 9040053 chr2L 9040129 9040140 4 87 2.5 4.0 3.2 1.0 98 chr2L 9040042 intergenic not near genes chr2L 9040091 intergenic not near genes chr2L 9040140 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-707 151 chr2L 9053413 9053430 chr2L 9053648 9053664 7 235 0.5 0.5 0.5 4.7 251 chr2L 9053413 exon CG31708 - chr2L 9053538 intron CG31708 - chr2L 9053664 intron CG31708 - chr2L_7_9050001 chr2L_9050001 RAL-707 152 chr2L 9084337 9084339 chr2L 16217660 16217660 11 7133321 12.0 11.5 11.8 0.9 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_12650001 chr2L_12650001 RAL-707 153 chr2L 9084340 9084340 chr2L 16217659 16217660 5 7133320 12.0 11.5 11.8 0.4 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-707 154 chr2L 9141331 9141356 chr2L 9141413 9141438 7 82 1.0 1.0 1.0 3.5 107 chr2L 9141331 intron CG32982 + chr2L 9141384 intron CG32982 + chr2L 9141438 intron CG32982 + chr2L_7_9140001 chr2L_9140001 RAL-707 155 chr2L 9235231 9235255 chr2L 9235337 9235361 9 106 5.5 0.5 3.0 2.2 130 chr2L 9235231 exon tai + chr2L 9235296 intron tai + chr2L 9235361 intron tai + chr2L_9_9235001 chr2L_9235001 RAL-707 156 chr2L 9297383 9297402 chr2L 9297460 9297479 6 76 4.5 3.5 4.0 1.2 96 chr2L 9297383 3` UTR Ggamma30A + chr2L 9297431 3` UTR Ggamma30A + chr2L 9297479 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-707 157 chr2L 9380296 9380321 chr2L 9380384 9380409 11 88 3.5 3.0 3.2 2.6 113 chr2L 9380296 intron Shawl - chr2L 9380352 intron Shawl - chr2L 9380409 intron Shawl - chr2L_11_9380001 chr2L_9380001 RAL-707 158 chr2L 9387257 9387267 chr2L 9387354 9387365 4 98 4.0 1.0 2.5 1.1 108 chr2L 9387257 intron Shawl - chr2L 9387311 intron Shawl - chr2L 9387365 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-707 159 chr2L 9393509 9393525 chr2L 9396476 9396492 jockey 7 2967 5.5 4.0 4.8 1.2 2983 chr2L 9393509 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396492 intron Shawl - chr2L_7_9395001 chr2L_9395001 RAL-707 160 chr2L 9450009 9450035 chr2L 9450099 9450117 7 88 0.5 0.0 0.2 5.8 108 chr2L 9450009 intron numb + chr2L 9450063 intron numb + chr2L 9450117 intron numb + chr2L_7_9450001 chr2L_9450001 RAL-707 161 chr2L 9456931 9456942 chr2L 9457012 9457020 4 80 2.5 2.0 2.2 1.2 89 chr2L 9456931 intron numb + chr2L 9456976 intron numb + chr2L 9457020 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-707 162 chr2L 9490524 9490551 chr2L 9490603 9490631 8 80 1.5 5.0 3.2 1.9 107 chr2L 9490524 intergenic not near genes chr2L 9490578 intergenic not near genes chr2L 9490631 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-707 163 chr2L 9493248 9493270 chr2L 9493332 9493354 5 83 2.0 3.0 2.5 1.4 106 chr2L 9493248 intron Gdi - chr2L 9493301 intron Gdi - chr2L 9493354 intron Gdi - chr2L_5_9490001 chr2L_9490001 RAL-707 164 chr2L 9509330 9509344 chr2L 9509412 9509426 4 82 0.0 3.0 1.5 1.6 96 chr2L 9509330 intron CG33298 + chr2L 9509378 intron CG33298 + chr2L 9509426 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-707 165 chr2L 9672616 9672641 chr2L 9672737 9672762 8 121 1.5 1.0 1.2 3.6 146 chr2L 9672616 intergenic not near genes chr2L 9672689 intergenic not near genes chr2L 9672762 intergenic not near genes chr2L_8_9670001 chr2L_9670001 RAL-707 166 chr2L 9730983 9731003 chr2L 9731066 9731086 5 83 1.5 1.5 1.5 2.0 103 chr2L 9730983 intron Nckx30C - chr2L 9731034 intron Nckx30C - chr2L 9731086 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-707 167 chr2L 9861812 9861822 chr2L 9861887 9861900 4 77 2.0 1.5 1.8 1.4 88 chr2L 9861812 intron nAChRalpha6 - chr2L 9861856 intron nAChRalpha6 - chr2L 9861900 intron nAChRalpha6 - chr2L_4_9860001 chr2L_9860001 RAL-707 168 chr2L 9973731 9973756 chr2L 9980850 9980875 HMS-Beagle 10 7119 4.5 4.0 4.2 1.9 7144 chr2L 9973731 intergenic not near genes chr2L 9977303 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-707 169 chr2L 9986365 9986380 chr2L 9986457 9986475 5 94 2.0 4.5 3.2 1.2 110 chr2L 9986365 intron bib + chr2L 9986420 intron bib + chr2L 9986475 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-707 170 chr2L 10032086 10032116 chr2L 10032171 10032201 8 85 1.5 2.5 2.0 2.7 115 chr2L 10032086 intergenic not near genes chr2L 10032144 intergenic not near genes chr2L 10032201 intergenic obst-B + chr2L_8_10030001 chr2L_10030001 RAL-707 171 chr2L 10033754 10033767 chr2L 10033847 10033858 4 92 2.5 2.5 2.5 1.1 104 chr2L 10033754 intron obst-B + chr2L 10033806 intron obst-B + chr2L 10033858 intron obst-B + chr2L_4_10030001 chr2L_10030001 RAL-707 172 chr2L 10105281 10105312 chr2L 10105356 10105388 6 76 2.0 3.0 2.5 1.7 107 chr2L 10105281 intron,intron CG44153 -,CG34109 + chr2L 10105334 intron,intron CG44153 -,CG34109 + chr2L 10105388 intron,intron CG44153 -,CG34109 + chr2L_6_10105001 chr2L_10105001 RAL-707 173 chr2L 10153200 10153232 chr2L 10153279 10153311 11 79 3.0 2.0 2.5 3.1 111 chr2L 10153200 intron,exon CG44153 -,CG4839 + chr2L 10153256 intron,intron CG44153 -,CG4839 + chr2L 10153311 intron,intron CG44153 -,CG4839 + chr2L_11_10150001 chr2L_10150001 RAL-707 174 chr2L 10156322 10156355 chr2L 10163792 10163825 blood 9 7470 2.0 4.0 3.0 2.2 7503 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-707 175 chr2L 10227348 10227368 chr2L 10227494 10227519 5 150 2.5 3.0 2.8 1.3 171 chr2L 10227348 intergenic CG5694 - chr2L 10227434 intergenic CG5694 - chr2L 10227519 intergenic CG5694 - chr2L_5_10225001 chr2L_10225001 RAL-707 176 chr2L 10276202 10276225 chr2L 10276280 10276303 5 78 0.5 1.0 0.8 2.8 101 chr2L 10276202 intron Utx - chr2L 10276252 intron Utx - chr2L 10276303 intron Utx - chr2L_5_10275001 chr2L_10275001 RAL-707 177 chr2L 10515361 10515387 chr2L 10515454 10515480 9 93 2.0 3.0 2.5 2.6 119 chr2L 10515361 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515480 intron,intron CG45083 -,Fatp - chr2L_9_10515001 chr2L_10515001 RAL-707 178 chr2L 10572699 10572733 chr2L 10572780 10572814 12 81 5.0 2.0 3.5 2.7 115 chr2L 10572699 intron Trim9 + chr2L 10572756 intron Trim9 + chr2L 10572814 intron Trim9 + chr2L_12_10570001 chr2L_10570001 RAL-707 179 chr2L 10578402 10578412 chr2L 10578621 10578634 4 221 1.5 4.5 3.0 1.0 232 chr2L 10578402 intron Trim9 + chr2L 10578518 intron Trim9 + chr2L 10578634 intron Trim9 + chr2L_4_10575001 chr2L_10575001 RAL-707 180 chr2L 10580796 10580818 chr2L 10580877 10580899 4 81 2.0 3.0 2.5 1.1 103 chr2L 10580796 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580899 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-707 181 chr2L 10592841 10592875 chr2L 10600503 10600536 opus 9 7662 3.5 2.0 2.8 2.4 7695 chr2L 10592841 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600536 intron Trim9 + chr2L_9_10595001 chr2L_10595001 RAL-707 182 chr2L 10647598 10647608 chr2L 10647723 10647733 4 125 8.5 15.5 12.0 0.3 135 chr2L 10647598 exon CG17097 + chr2L 10647666 exon CG17097 + chr2L 10647733 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-707 183 chr2L 10656494 10656521 chr2L 10656579 10656606 13 85 3.5 2.5 3.0 3.2 112 chr2L 10656494 intergenic not near genes chr2L 10656550 intergenic not near genes chr2L 10656606 intergenic not near genes chr2L_13_10655001 chr2L_10655001 RAL-707 184 chr2L 10683456 10683471 chr2L 10683535 10683550 4 79 2.0 0.0 1.0 2.0 94 chr2L 10683456 3` UTR CG7299 - chr2L 10683503 3` UTR CG7299 - chr2L 10683550 3` UTR CG7299 - chr2L_4_10680001 chr2L_10680001 RAL-707 185 chr2L 10862846 10862873 chr2L 10864460 10864485 Rt1c 6 1614 3.5 4.0 3.8 1.2 1639 chr2L 10862846 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864485 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-707 186 chr2L 10912987 10913002 chr2L 10913066 10913081 5 79 4.0 5.0 4.5 0.9 94 chr2L 10912987 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913081 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-707 187 chr2L 10945071 10945088 chr2L 10945330 10945347 5 259 3.5 0.5 2.0 1.7 276 chr2L 10945071 intron dpr2 - chr2L 10945209 intron dpr2 - chr2L 10945347 intron dpr2 - chr2L_5_10945001 chr2L_10945001 RAL-707 188 chr2L 10946961 10946974 chr2L 10956165 10956189 roo 5 9213 5.5 5.5 5.5 0.8 9228 chr2L 10946961 intron dpr2 - chr2L 10951575 intron dpr2 - chr2L 10956189 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-707 189 chr2L 11224056 11224088 chr2L 11224167 11224199 9 111 2.0 2.5 2.2 2.8 143 chr2L 11224056 intron ab + chr2L 11224128 intron ab + chr2L 11224199 intron ab + chr2L_9_11220001 chr2L_11220001 RAL-707 190 chr2L 11303066 11303087 chr2L 11303147 11303168 5 80 2.5 2.0 2.2 1.6 102 chr2L 11303066 intergenic not near genes chr2L 11303117 intergenic not near genes chr2L 11303168 intergenic not near genes chr2L_5_11300001 chr2L_11300001 RAL-707 191 chr2L 11356408 11356423 chr2L 11356519 11356534 5 111 3.0 2.0 2.5 1.4 126 chr2L 11356408 intergenic not near genes chr2L 11356471 intergenic not near genes chr2L 11356534 intergenic not near genes chr2L_5_11355001 chr2L_11355001 RAL-707 192 chr2L 11357985 11358012 chr2L 11358063 11358090 7 78 2.0 2.5 2.2 2.2 105 chr2L 11357985 intergenic not near genes chr2L 11358038 intergenic not near genes chr2L 11358090 intergenic not near genes chr2L_7_11355001 chr2L_11355001 RAL-707 193 chr2L 11404785 11404810 chr2L 11404861 11404886 8 76 0.0 3.5 1.8 2.9 101 chr2L 11404785 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404886 intergenic not near genes chr2L_8_11400001 chr2L_11400001 RAL-707 194 chr2L 11413309 11413320 chr2L 11413432 11413444 4 124 2.0 1.5 1.8 1.4 135 chr2L 11413309 intergenic not near genes chr2L 11413376 intergenic not near genes chr2L 11413444 intergenic not near genes chr2L_4_11410001 chr2L_11410001 RAL-707 195 chr2L 11540586 11540614 chr2L 11547988 11548016 Tabor 6 7402 2.5 3.5 3.0 1.5 7430 chr2L 11540586 intergenic not near genes chr2L 11544301 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_6_11540001 chr2L_11540001 RAL-707 196 chr2L 11563639 11563661 chr2L 11568843 11568864 copia 4 5204 3.5 3.5 3.5 0.9 5225 chr2L 11563639 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568864 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-707 197 chr2L 11614066 11614077 chr2L 11615560 11615572 hopper2 6 1493 1.0 2.0 1.5 2.4 1506 chr2L 11614066 intron kek2 + chr2L 11614819 intron kek2 + chr2L 11615572 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-707 198 chr2L 11636286 11636302 chr2L 11636374 11636391 5 89 0.0 2.0 1.0 2.5 105 chr2L 11636286 intergenic not near genes chr2L 11636338 intergenic not near genes chr2L 11636391 intergenic not near genes chr2L_5_11635001 chr2L_11635001 RAL-707 199 chr2L 11713507 11713538 chr2L 11720975 11721006 blood 4 7468 2.0 3.0 2.5 1.1 7499 chr2L 11713507 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-707 200 chr2L 11765068 11765098 chr2L 11765425 11765455 7 357 1.5 2.0 1.8 2.5 387 chr2L 11765068 intergenic not near genes chr2L 11765262 intergenic not near genes chr2L 11765455 intergenic not near genes chr2L_7_11765001 chr2L_11765001 RAL-707 201 chr2L 11889060 11889095 chr2L 11889142 11889177 13 81 3.5 2.0 2.8 3.4 117 chr2L 11889060 intron Pde1c - chr2L 11889118 intron Pde1c - chr2L 11889177 intron Pde1c - chr2L_13_11885001 chr2L_11885001 RAL-707 202 chr2L 11910957 11910981 chr2L 11911035 11911059 8 77 3.0 2.0 2.5 2.3 102 chr2L 11910957 intron Pde1c - chr2L 11911008 intron Pde1c - chr2L 11911059 intron Pde1c - chr2L_8_11910001 chr2L_11910001 RAL-707 203 chr2L 11932165 11932197 chr2L 11932244 11932276 11 79 1.5 2.5 2.0 3.7 111 chr2L 11932165 intergenic not near genes chr2L 11932220 intergenic not near genes chr2L 11932276 intergenic not near genes chr2L_11_11930001 chr2L_11930001 RAL-707 204 chr2L 11958997 11959024 chr2L 11959074 11959102 7 77 0.0 1.5 0.8 3.9 105 chr2L 11958997 3` UTR CR43314 - chr2L 11959050 3` UTR CR43314 - chr2L 11959102 3` UTR CR43314 - chr2L_7_11955001 chr2L_11955001 RAL-707 205 chr2L 12031386 12031416 chr2L 12031466 12031497 8 81 0.5 0.5 0.5 5.3 111 chr2L 12031386 intron dmGlut + chr2L 12031442 intron dmGlut + chr2L 12031497 intron dmGlut + chr2L_8_12030001 chr2L_12030001 RAL-707 206 chr2L 12132727 12132746 chr2L 12132813 12132832 5 86 2.0 0.5 1.2 2.3 105 chr2L 12132727 intron rho-6 - chr2L 12132780 intron rho-6 - chr2L 12132832 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-707 207 chr2L 12183167 12183198 chr2L 12183244 12183275 10 77 1.0 1.0 1.0 5.0 108 chr2L 12183167 intron aret + chr2L 12183221 intron aret + chr2L 12183275 intron aret + chr2L_10_12180001 chr2L_12180001 RAL-707 208 chr2L 12293570 12293591 chr2L 12293666 12293688 5 97 2.0 3.0 2.5 1.4 118 chr2L 12293570 intron aret + chr2L 12293629 intron aret + chr2L 12293688 intron aret + chr2L_5_12290001 chr2L_12290001 RAL-707 209 chr2L 12305410 12305433 chr2L 12305498 12305521 13 88 3.0 3.5 3.2 3.1 111 chr2L 12305410 intron aret + chr2L 12305466 intron aret + chr2L 12305521 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-707 210 chr2L 12349637 12349661 chr2L 12349731 12349755 8 94 1.0 2.0 1.5 3.2 118 chr2L 12349637 intron bru-2 + chr2L 12349696 intron bru-2 + chr2L 12349755 intron bru-2 + chr2L_8_12345001 chr2L_12345001 RAL-707 211 chr2L 12398671 12398682 chr2L 12398760 12398771 4 88 8.5 4.0 6.2 0.6 100 chr2L 12398671 exon Pkd2 + chr2L 12398721 exon Pkd2 + chr2L 12398771 exon Pkd2 + chr2L_4_12395001 chr2L_12395001 RAL-707 212 chr2L 12425830 12425857 chr2L 12429247 12429271 8 3415 21.5 25.5 23.5 0.3 3441 chr2L 12425830 exon CG6405 + chr2L 12427550 exon CG5446 - chr2L 12429271 exon CG6388 + chr2L_8_12425001 chr2L_12425001 RAL-707 213 chr2L 12487886 12487920 chr2L 12487967 12488001 10 81 3.5 6.5 5.0 1.7 115 chr2L 12487886 intron bun - chr2L 12487944 intron bun - chr2L 12488001 intron bun - chr2L_10_12485001 chr2L_12485001 RAL-707 214 chr2L 12529236 12529257 chr2L 12529388 12529409 6 152 1.0 4.0 2.5 1.7 173 chr2L 12529236 intron bun - chr2L 12529322 intron bun - chr2L 12529409 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-707 215 chr2L 12558320 12558346 chr2L 12565449 12565475 HMS-Beagle 7 7129 4.0 2.0 3.0 1.8 7155 chr2L 12558320 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565475 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-707 216 chr2L 12583491 12583516 chr2L 12583583 12583608 6 92 0.5 0.0 0.2 5.0 117 chr2L 12583491 5` UTR CR44595 + chr2L 12583550 5` UTR CR44595 + chr2L 12583608 intergenic CR44595 + chr2L_6_12580001 chr2L_12580001 RAL-707 217 chr2L 12728921 12728940 chr2L 12729161 12729182 pogo 4 241 4.5 3.5 4.0 0.8 261 chr2L 12728921 intron MRP + chr2L 12729052 intron MRP + chr2L 12729182 intron MRP + chr2L_4_12725001 chr2L_12725001 RAL-707 218 chr2L 12731054 12731084 chr2L 12735821 12735851 F-element 8 4767 2.0 3.0 2.5 2.3 4797 chr2L 12731054 intron MRP + chr2L 12733452 intron MRP + chr2L 12735851 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-707 219 chr2L 12739175 12739205 chr2L 12743956 12743986 Doc 7 4781 1.0 4.5 2.8 1.8 4811 chr2L 12739175 exon MRP + chr2L 12741580 intron MRP + chr2L 12743986 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-707 220 chr2L 12751314 12751338 chr2L 12751397 12751421 7 82 3.0 2.5 2.8 1.8 107 chr2L 12751314 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-707 221 chr2L 12791601 12791627 chr2L 12795276 12795302 F-element 8 3675 5.5 3.0 4.2 1.5 3701 chr2L 12791601 intergenic not near genes chr2L 12793452 intergenic not near genes chr2L 12795302 intergenic not near genes chr2L_8_12790001 chr2L_12790001 RAL-707 222 chr2L 12811464 12811471 chr2L 12811563 12811570 4 99 0.0 3.0 1.5 1.6 106 chr2L 12811464 intergenic not near genes chr2L 12811517 intergenic not near genes chr2L 12811570 intergenic not near genes chr2L_4_12810001 chr2L_12810001 RAL-707 223 chr2L 12861693 12861718 chr2L 12863160 12863182 hobo 8 1466 3.0 2.5 2.8 2.1 1489 chr2L 12861693 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-707 224 chr2L 12894030 12894054 chr2L 12895496 12895520 hobo 4 1466 4.5 5.5 5.0 0.7 1490 chr2L 12894030 intergenic not near genes chr2L 12894775 intergenic not near genes chr2L 12895520 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-707 225 chr2L 12933849 12933873 chr2L 12941316 12941339 blood 8 7467 6.5 2.5 4.5 1.5 7490 chr2L 12933849 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941339 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-707 226 chr2L 13109453 13109467 chr2L 13109581 13109595 5 128 2.0 2.0 2.0 1.7 142 chr2L 13109453 3` UTR CG5142 + chr2L 13109524 intergenic CG5142 + chr2L 13109595 intergenic CG5142 + chr2L_5_13105001 chr2L_13105001 RAL-707 227 chr2L 13215384 13215411 chr2L 13215659 13215686 8 275 1.5 3.0 2.2 2.5 302 chr2L 13215384 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215535 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215686 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_8_13215001 chr2L_13215001 RAL-707 228 chr2L 13405647 13405676 chr2L 13410444 13410473 Doc 15 4797 2.0 3.0 2.5 4.3 4826 chr2L 13405647 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-707 229 chr2L 13422486 13422505 chr2L 13422565 13422584 5 79 0.0 5.0 2.5 1.4 98 chr2L 13422486 intron CG42784 + chr2L 13422535 intron CG42784 + chr2L 13422584 intron CG42784 + chr2L_5_13420001 chr2L_13420001 RAL-707 230 chr2L 13449464 13449494 chr2L 13456900 13456929 Quasimodo 6 7436 3.0 4.0 3.5 1.3 7465 chr2L 13449464 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-707 231 chr2L 13481450 13481473 chr2L 13482057 13482080 jockey 5 607 5.0 7.5 6.2 0.7 630 chr2L 13481450 intron CG42784 + chr2L 13481765 intron CG42784 + chr2L 13482080 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-707 232 chr2L 13536280 13536300 chr2L 13536372 13536390 7 91 4.0 8.0 6.0 1.0 110 chr2L 13536280 intron B4 - chr2L 13536335 intron B4 - chr2L 13536390 intron B4 - chr2L_7_13535001 chr2L_13535001 RAL-707 233 chr2L 13543965 13543969 chr2L 13544043 13544045 5 77 5.5 2.5 4.0 1.0 80 chr2L 13543965 intron B4 - chr2L 13544005 intron B4 - chr2L 13544045 intron B4 - chr2L_5_13540001 chr2L_13540001 RAL-707 234 chr2L 13549165 13549190 chr2L 13549243 13549268 10 77 7.0 2.0 4.5 1.8 103 chr2L 13549165 5` UTR B4 - chr2L 13549216 5` UTR B4 - chr2L 13549268 5` UTR B4 - chr2L_10_13545001 chr2L_13545001 RAL-707 235 chr2L 13628961 13628976 chr2L 13629053 13629072 5 95 1.0 3.5 2.2 1.6 111 chr2L 13628961 intron kuz + chr2L 13629016 intron kuz + chr2L 13629072 intron kuz + chr2L_5_13625001 chr2L_13625001 RAL-707 236 chr2L 13699551 13699587 chr2L 13699628 13699664 19 77 2.0 3.5 2.8 5.0 113 chr2L 13699551 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699664 intron CG31814 - chr2L_19_13695001 chr2L_13695001 RAL-707 237 chr2L 13761807 13761821 chr2L 13762913 13762932 Doc 7 1110 5.5 2.5 4.0 1.4 1125 chr2L 13761807 intron TM9SF4 + chr2L 13762370 intron TM9SF4 + chr2L 13762932 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-707 238 chr2L 13842133 13842164 chr2L 13842217 13842248 5 84 0.5 1.0 0.8 2.8 115 chr2L 13842133 intron CenG1A + chr2L 13842190 intron CenG1A + chr2L 13842248 intron CenG1A + chr2L_5_13840001 chr2L_13840001 RAL-707 239 chr2L 13853096 13853106 chr2L 13862247 13862257 roo 5 9151 6.5 4.0 5.2 0.8 9161 chr2L 13853096 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862257 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-707 240 chr2L 13988295 13988304 chr2L 13988382 13988391 4 87 1.0 2.0 1.5 1.6 96 chr2L 13988295 intron rk - chr2L 13988343 intron rk - chr2L 13988391 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-707 241 chr2L 14005182 14005189 chr2L 14005260 14005263 7 76 3.0 2.5 2.8 1.8 81 chr2L 14005182 intergenic not near genes chr2L 14005222 intergenic not near genes chr2L 14005263 intergenic not near genes chr2L_7_14005001 chr2L_14005001 RAL-707 242 chr2L 14056809 14056837 chr2L 14056895 14056922 7 86 1.5 2.0 1.8 2.5 113 chr2L 14056809 intron nAChRalpha5 + chr2L 14056866 intron nAChRalpha5 + chr2L 14056922 intron nAChRalpha5 + chr2L_7_14055001 chr2L_14055001 RAL-707 243 chr2L 14246294 14246307 chr2L 14246372 14246385 5 78 0.0 0.0 0.0 5.0 91 chr2L 14246294 intergenic not near genes chr2L 14246340 intergenic not near genes chr2L 14246385 intergenic not near genes chr2L_5_14245001 chr2L_14245001 RAL-707 244 chr2L 14472049 14472059 chr2L 14472125 14472135 4 76 2.5 2.0 2.2 1.2 86 chr2L 14472049 intergenic not near genes chr2L 14472092 intergenic not near genes chr2L 14472135 intergenic not near genes chr2L_4_14470001 chr2L_14470001 RAL-707 245 chr2L 14557247 14557276 chr2L 14557343 14557372 8 96 1.5 2.0 1.8 2.9 125 chr2L 14557247 intergenic not near genes chr2L 14557310 intergenic not near genes chr2L 14557372 intergenic not near genes chr2L_8_14555001 chr2L_14555001 RAL-707 246 chr2L 14588386 14588420 chr2L 14588540 14588574 6 154 1.0 0.0 0.5 4.0 188 chr2L 14588386 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-707 247 chr2L 14601976 14602003 chr2L 14602059 14602087 5 84 3.0 1.0 2.0 1.7 111 chr2L 14601976 exon osp - chr2L 14602032 intron osp - chr2L 14602087 intron osp - chr2L_5_14600001 chr2L_14600001 RAL-707 248 chr2L 14642572 14642604 chr2L 14651735 14651767 roo 12 9163 1.0 2.5 1.8 4.3 9195 chr2L 14642572 intron osp - chr2L 14647170 intron osp - chr2L 14651767 intron osp - chr2L_12_14645001 chr2L_14645001 RAL-707 249 chr2L 14803883 14803910 chr2L 14809086 14809112 copia 7 5203 1.5 4.5 3.0 1.8 5229 chr2L 14803883 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809112 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-707 250 chr2L 14923103 14923130 chr2L 14923183 14923210 11 80 6.5 1.5 4.0 2.2 107 chr2L 14923103 intron CG42313 - chr2L 14923156 intron CG42313 - chr2L 14923210 intron CG42313 - chr2L_11_14920001 chr2L_14920001 RAL-707 251 chr2L 15044708 15044733 chr2L 15044784 15044809 8 76 1.5 0.0 0.8 4.4 101 chr2L 15044708 intergenic ck - chr2L 15044758 intergenic ck - chr2L 15044809 intergenic ck - chr2L_8_15040001 chr2L_15040001 RAL-707 252 chr2L 15078623 15078656 chr2L 15078750 15078783 8 127 1.0 3.5 2.2 2.5 160 chr2L 15078623 intron CG15270 + chr2L 15078703 intron CG15270 + chr2L 15078783 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-707 253 chr2L 15127767 15127792 chr2L 15127853 15127873 10 85 9.0 5.5 7.2 1.2 106 chr2L 15127767 intergenic not near genes chr2L 15127820 intergenic not near genes chr2L 15127873 intergenic not near genes chr2L_10_15125001 chr2L_15125001 RAL-707 254 chr2L 15196735 15196770 chr2L 15196819 15196854 10 84 1.0 2.5 1.8 3.6 119 chr2L 15196735 intron CG4168 - chr2L 15196794 intron CG4168 - chr2L 15196854 intron CG4168 - chr2L_10_15195001 chr2L_15195001 RAL-707 255 chr2L 15244063 15244072 chr2L 15244176 15244185 4 113 3.0 5.0 4.0 0.8 122 chr2L 15244063 intron ZnT35C - chr2L 15244124 intron ZnT35C - chr2L 15244185 intron ZnT35C - chr2L_4_15240001 chr2L_15240001 RAL-707 256 chr2L 15280608 15280634 chr2L 15280692 15280718 7 84 4.0 3.0 3.5 1.6 110 chr2L 15280608 intergenic CR45349 + chr2L 15280663 intergenic CR45349 + chr2L 15280718 intergenic CR45349 + chr2L_7_15280001 chr2L_15280001 RAL-707 257 chr2L 15283887 15283903 chr2L 15284179 15284195 5 292 4.0 3.5 3.8 1.0 308 chr2L 15283887 intergenic not near genes chr2L 15284041 intergenic not near genes chr2L 15284195 intergenic not near genes chr2L_5_15280001 chr2L_15280001 RAL-707 258 chr2L 15446050 15446078 chr2L 15453519 15453547 blood 6 7469 2.0 3.0 2.5 1.7 7497 chr2L 15446050 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453547 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-707 259 chr2L 15487025 15487054 chr2L 15487139 15487168 10 114 4.5 0.5 2.5 2.9 143 chr2L 15487025 intergenic not near genes chr2L 15487096 intergenic not near genes chr2L 15487168 intergenic not near genes chr2L_10_15485001 chr2L_15485001 RAL-707 260 chr2L 15500866 15500894 chr2L 15501111 15501139 6 245 1.5 3.5 2.5 1.7 273 chr2L 15500866 intron lace + chr2L 15501002 intron lace + chr2L 15501139 intron lace + chr2L_6_15500001 chr2L_15500001 RAL-707 261 chr2L 15586411 15586441 chr2L 15593463 15593493 297 4 7052 2.5 3.0 2.8 1.1 7082 chr2L 15586411 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593493 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-707 262 chr2L 15626363 15626389 chr2L 15626442 15626465 8 78 1.5 1.5 1.5 3.2 102 chr2L 15626363 intergenic not near genes chr2L 15626414 intergenic not near genes chr2L 15626465 intergenic not near genes chr2L_8_15625001 chr2L_15625001 RAL-707 263 chr2L 15761100 15761108 chr2L 15761180 15761188 4 80 0.0 2.5 1.2 1.8 88 chr2L 15761100 intron Gli - chr2L 15761144 intron Gli - chr2L 15761188 intron Gli - chr2L_4_15760001 chr2L_15760001 RAL-707 264 chr2L 15823351 15823371 chr2L 15823427 15823447 5 76 2.5 1.0 1.8 1.8 96 chr2L 15823351 intergenic CR44601 - chr2L 15823399 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-707 265 chr2L 15915655 15915684 chr2L 15915732 15915762 10 78 2.5 1.5 2.0 3.3 107 chr2L 15915655 intron beat-Ib - chr2L 15915708 intron beat-Ib - chr2L 15915762 intron beat-Ib - chr2L_10_15915001 chr2L_15915001 RAL-707 266 chr2L 15954533 15954547 chr2L 15954706 15954720 5 173 1.5 2.0 1.8 1.8 187 chr2L 15954533 intron beat-Ib - chr2L 15954626 intron beat-Ib - chr2L 15954720 intron beat-Ib - chr2L_5_15950001 chr2L_15950001 RAL-707 267 chr2L 15956023 15956052 chr2L 15957490 15957519 hobo 10 1467 5.0 5.0 5.0 1.7 1496 chr2L 15956023 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_10_15955001 chr2L_15955001 RAL-707 268 chr2L 16051609 16051633 chr2L 16051688 16051712 10 79 2.0 1.5 1.8 3.6 103 chr2L 16051609 intron beat-Ia + chr2L 16051660 intron beat-Ia + chr2L 16051712 intron beat-Ia + chr2L_10_16050001 chr2L_16050001 RAL-707 269 chr2L 16058126 16058151 chr2L 16058267 16058292 7 141 1.5 0.5 1.0 3.5 166 chr2L 16058126 intron beat-Ia + chr2L 16058209 intron beat-Ia + chr2L 16058292 intron beat-Ia + chr2L_7_16055001 chr2L_16055001 RAL-707 270 chr2L 16059957 16059982 chr2L 16060055 16060080 4 98 1.0 1.5 1.2 1.8 123 chr2L 16059957 intron beat-Ia + chr2L 16060018 intron beat-Ia + chr2L 16060080 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-707 271 chr2L 14672881 14672886 chr2L 16071771 16071771 4 1398887 5.5 13.5 9.5 0.4 1398890 chr2L 14672881 intron osp - chr2L 15372326 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_15370001 chr2L_15370001 RAL-707 272 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 12 145889 14.5 11.5 13.0 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-707 273 chr2L 16141171 16141191 chr2L 16146378 16146398 copia 9 5207 2.5 2.5 2.5 2.6 5227 chr2L 16141171 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-707 274 chr2L 16210616 16210648 chr2L 16210724 16210756 4 108 2.0 1.5 1.8 1.4 140 chr2L 16210616 intergenic not near genes chr2L 16210686 intergenic not near genes chr2L 16210756 intergenic not near genes chr2L_4_16210001 chr2L_16210001 RAL-707 275 chr2L 9084336 9084340 chr2L 16217660 16217660 21 7133321 12.0 11.5 11.8 1.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_21_12650001 chr2L_12650001 RAL-707 276 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 14.5 11.5 13.0 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-707 277 chr2L 16217660 16217660 chr2L 18622718 18622720 13 2405059 13.5 18.0 15.8 0.8 2405060 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622720 intron MESR3 + chr2L_13_17420001 chr2L_17420001 RAL-707 278 chr2L 16243696 16243855 chr2L 16243779 16243950 10 92 5.0 2.0 3.5 2.2 254 chr2L 16243696 exon CG42818 + chr2L 16243823 exon CG42818 + chr2L 16243950 exon CG42818 + chr2L_10_16240001 chr2L_16240001 RAL-707 279 chr2L 16280250 16280285 chr2L 16281418 16281453 1360 12 1168 1.0 4.5 2.8 3.2 1203 chr2L 16280250 intron crp - chr2L 16280852 intron crp - chr2L 16281453 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-707 280 chr2L 16320346 16320373 chr2L 16320485 16320512 6 137 2.0 3.5 2.8 1.6 166 chr2L 16320346 intron cact - chr2L 16320429 intron cact - chr2L 16320512 intron cact - chr2L_6_16320001 chr2L_16320001 RAL-707 281 chr2L 16375392 16375397 chr2L 16375483 16375488 4 91 8.5 0.0 4.2 0.8 96 chr2L 16375392 intergenic not near genes chr2L 16375440 intergenic not near genes chr2L 16375488 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-707 282 chr2L 16397628 16397638 chr2L 16397776 16397786 5 147 2.0 2.5 2.2 1.6 158 chr2L 16397628 intergenic not near genes chr2L 16397707 intergenic not near genes chr2L 16397786 intergenic not near genes chr2L_5_16395001 chr2L_16395001 RAL-707 283 chr2L 16488736 16488755 chr2L 16488856 16488875 6 120 4.0 3.0 3.5 1.3 139 chr2L 16488736 exon CG4580 + chr2L 16488806 exon CG4580 + chr2L 16488875 exon CG4580 + chr2L_6_16485001 chr2L_16485001 RAL-707 284 chr2L 16511967 16511996 chr2L 16519081 16519110 HMS-Beagle 5 7114 0.5 0.0 0.2 4.2 7143 chr2L 16511967 intron CG5953 - chr2L 16515538 intron CG5953 - chr2L 16519110 intron CG5953 - chr2L_5_16515001 chr2L_16515001 RAL-707 285 chr2L 16550652 16550688 chr2L 16550728 16550764 12 76 1.0 3.5 2.2 3.8 112 chr2L 16550652 intron CG42389 + chr2L 16550708 intron CG42389 + chr2L 16550764 intron CG42389 + chr2L_12_16550001 chr2L_16550001 RAL-707 286 chr2L 16592097 16592120 chr2L 16592302 16592325 8 205 2.0 0.5 1.2 3.6 228 chr2L 16592097 intron CG42389 + chr2L 16592211 intron CG42389 + chr2L 16592325 intron CG42389 + chr2L_8_16590001 chr2L_16590001 RAL-707 287 chr2L 16709092 16709101 chr2L 16709176 16709185 5 84 3.0 4.5 3.8 1.0 93 chr2L 16709092 intron CG31808 - chr2L 16709138 intron CG31808 - chr2L 16709185 intron CG31808 - chr2L_5_16705001 chr2L_16705001 RAL-707 288 chr2L 16764977 16764995 chr2L 16765057 16765075 7 80 1.0 1.5 1.2 3.2 98 chr2L 16764977 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765075 intergenic not near genes chr2L_7_16765001 chr2L_16765001 RAL-707 289 chr2L 16841020 16841043 chr2L 16841096 16841119 6 76 2.0 1.5 1.8 2.1 99 chr2L 16841020 intron,intron SclA +,SclB + chr2L 16841070 intron,intron SclA +,SclB + chr2L 16841119 intron,intron SclA +,SclB + chr2L_6_16840001 chr2L_16840001 RAL-707 290 chr2L 16923234 16923263 chr2L 16923348 16923376 6 113 0.0 2.5 1.2 2.7 142 chr2L 16923234 intergenic not near genes chr2L 16923305 intergenic not near genes chr2L 16923376 intergenic not near genes chr2L_6_16920001 chr2L_16920001 RAL-707 291 chr2L 17101022 17101050 chr2L 17101551 17101579 5 529 13.5 14.0 13.8 0.3 557 chr2L 17101022 intergenic not near genes chr2L 17101300 intergenic not near genes chr2L 17101579 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-707 292 chr2L 17158722 17158748 chr2L 17158825 17158851 6 103 4.5 2.5 3.5 1.3 129 chr2L 17158722 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158786 intron,intron CG34106 +,beat-IIIa + chr2L 17158851 intron,intron CG34106 +,beat-IIIa + chr2L_6_17155001 chr2L_17155001 RAL-707 293 chr2L 17159858 17159881 chr2L 17159941 17159964 6 83 1.0 1.5 1.2 2.7 106 chr2L 17159858 intron,intron CG34106 +,beat-IIIa + chr2L 17159911 intron,intron CG34106 +,beat-IIIa + chr2L 17159964 intron,intron CG34106 +,beat-IIIa + chr2L_6_17155001 chr2L_17155001 RAL-707 294 chr2L 17163606 17163634 chr2L 17163695 17163723 6 89 3.0 1.0 2.0 2.0 117 chr2L 17163606 intron,intron CG34106 +,beat-IIIa + chr2L 17163664 intron,intron CG34106 +,beat-IIIa + chr2L 17163723 intron,intron CG34106 +,beat-IIIa + chr2L_6_17160001 chr2L_17160001 RAL-707 295 chr2L 17167567 17167584 chr2L 17167808 17167825 pogo 4 240 2.5 4.0 3.2 1.0 258 chr2L 17167567 intron,intron CG34106 +,beat-IIIa + chr2L 17167696 intron,intron CG34106 +,beat-IIIa + chr2L 17167825 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-707 296 chr2L 17239045 17239070 chr2L 17239129 17239154 6 84 3.0 3.5 3.2 1.4 109 chr2L 17239045 intron beat-IIIc - chr2L 17239100 intron beat-IIIc - chr2L 17239154 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-707 297 chr2L 17264742 17264777 chr2L 17264822 17264857 9 80 2.5 0.5 1.5 3.6 115 chr2L 17264742 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264857 intergenic not near genes chr2L_9_17260001 chr2L_17260001 RAL-707 298 chr2L 17273192 17273223 chr2L 17277975 17278004 F-element 10 4782 3.5 2.5 3.0 2.5 4812 chr2L 17273192 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278004 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-707 299 chr2L 17303437 17303465 chr2L 17303615 17303643 8 178 2.0 4.0 3.0 2.0 206 chr2L 17303437 intergenic not near genes chr2L 17303540 intergenic not near genes chr2L 17303643 intergenic not near genes chr2L_8_17300001 chr2L_17300001 RAL-707 300 chr2L 17344533 17344567 chr2L 17344614 17344648 12 81 1.5 2.5 2.0 4.0 115 chr2L 17344533 intergenic not near genes chr2L 17344590 intergenic not near genes chr2L 17344648 intergenic not near genes chr2L_12_17340001 chr2L_17340001 RAL-707 301 chr2L 17360038 17360044 chr2L 17360216 17360222 4 178 1.5 0.0 0.8 2.2 184 chr2L 17360038 intergenic not near genes chr2L 17360130 intergenic not near genes chr2L 17360222 intergenic not near genes chr2L_4_17360001 chr2L_17360001 RAL-707 302 chr2L 17432023 17432046 chr2L 17432130 17432153 1360 5 107 0.0 0.0 0.0 5.0 130 chr2L 17432023 intron Dif - chr2L 17432088 intron Dif - chr2L 17432153 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-707 303 chr2L 17466426 17466455 chr2L 17466519 17466548 13 93 0.0 3.5 1.8 4.6 122 chr2L 17466426 intron BicD - chr2L 17466487 intron BicD - chr2L 17466548 intron BicD - chr2L_13_17465001 chr2L_17465001 RAL-707 304 chr2L 17503221 17503250 chr2L 17503298 17503327 11 77 3.0 3.0 3.0 2.8 106 chr2L 17503221 intron Dhc36C + chr2L 17503274 intron Dhc36C + chr2L 17503327 intron Dhc36C + chr2L_11_17500001 chr2L_17500001 RAL-707 305 chr2L 17790219 17790235 chr2L 17790302 17790318 6 83 1.5 1.0 1.2 2.7 99 chr2L 17790219 intron CadN2 - chr2L 17790268 intron CadN2 - chr2L 17790318 intron CadN2 - chr2L_6_17790001 chr2L_17790001 RAL-707 306 chr2L 17819921 17819951 chr2L 17825124 17825152 copia 7 5202 1.0 3.0 2.0 2.3 5231 chr2L 17819921 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825152 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-707 307 chr2L 17855495 17855527 chr2L 17855572 17855605 11 78 1.5 1.0 1.2 5.0 110 chr2L 17855495 intron CadN2 - chr2L 17855550 intron CadN2 - chr2L 17855605 intron CadN2 - chr2L_11_17855001 chr2L_17855001 RAL-707 308 chr2L 17911959 17911990 chr2L 17914137 17914168 pogo 7 2178 2.5 4.0 3.2 1.7 2209 chr2L 17911959 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914168 intergenic CG43271 - chr2L_7_17910001 chr2L_17910001 RAL-707 309 chr2L 17951945 17951978 chr2L 17953411 17953445 hobo 9 1467 3.5 1.0 2.2 2.8 1500 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-707 310 chr2L 17987313 17987337 chr2L 17991517 17991541 4 4204 20.0 13.5 16.8 0.2 4228 chr2L 17987313 exon CG5681 + chr2L 17989427 intergenic not near genes chr2L 17991541 3` UTR Prosbeta5R2 + chr2L_4_17985001 chr2L_17985001 RAL-707 311 chr2L 18051876 18051909 chr2L 18061023 18061056 roo 7 9147 2.0 3.5 2.8 1.8 9180 chr2L 18051876 intron rdo + chr2L 18056466 intron rdo + chr2L 18061056 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-707 312 chr2L 18111246 18111264 chr2L 18111336 18111355 6 91 3.5 3.5 3.5 1.3 109 chr2L 18111246 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-707 313 chr2L 18122330 18122339 chr2L 18122931 18122940 8 601 1.5 0.5 1.0 4.0 610 chr2L 18122330 intron CG5758 + chr2L 18122635 intron CG5758 + chr2L 18122940 intron CG5758 + chr2L_8_18120001 chr2L_18120001 RAL-707 314 chr2L 18254814 18254841 chr2L 18254914 18254941 7 100 1.5 2.5 2.0 2.3 127 chr2L 18254814 intron CG42750 - chr2L 18254878 intron CG42750 - chr2L 18254941 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-707 315 chr2L 18264064 18264086 chr2L 18264141 18264163 4 75 3.5 1.5 2.5 1.1 99 chr2L 18264064 intron CG42750 - chr2L 18264114 intron CG42750 - chr2L 18264163 intron CG42750 - chr2L_4_18260001 chr2L_18260001 RAL-707 316 chr2L 18274043 18274075 chr2L 18274129 18274161 11 86 2.0 3.5 2.8 2.9 118 chr2L 18274043 intron CG42750 - chr2L 18274102 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_11_18270001 chr2L_18270001 RAL-707 317 chr2L 18303978 18304004 chr2L 18304069 18304095 4 91 2.0 2.0 2.0 1.3 117 chr2L 18303978 intergenic not near genes chr2L 18304036 intergenic not near genes chr2L 18304095 intergenic not near genes chr2L_4_18300001 chr2L_18300001 RAL-707 318 chr2L 18334615 18334647 chr2L 18334700 18334732 11 85 2.5 1.0 1.8 3.9 117 chr2L 18334615 intron Fas3 + chr2L 18334674 intron Fas3 + chr2L 18334732 intron Fas3 + chr2L_11_18330001 chr2L_18330001 RAL-707 319 chr2L 18538567 18538598 chr2L 18538648 18538679 6 81 0.5 2.0 1.2 2.7 112 chr2L 18538567 intron Pde11 - chr2L 18538623 intron Pde11 - chr2L 18538679 intron Pde11 - chr2L_6_18535001 chr2L_18535001 RAL-707 320 chr2L 16217660 16217660 chr2L 18622718 18622719 9 2405058 13.5 18.0 15.8 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-707 321 chr2L 18664579 18664613 chr2L 18664653 18664689 9 76 2.0 3.0 2.5 2.6 110 chr2L 18664579 intergenic not near genes chr2L 18664634 intergenic not near genes chr2L 18664689 intergenic not near genes chr2L_9_18660001 chr2L_18660001 RAL-707 322 chr2L 18812557 18812588 chr2L 18812820 18812850 6 263 2.5 2.0 2.2 1.9 293 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812850 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_6_18810001 chr2L_18810001 RAL-707 323 chr2L 18898395 18898426 chr2L 18898477 18898508 16 82 3.0 0.5 1.8 5.7 113 chr2L 18898395 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_16_18895001 chr2L_18895001 RAL-707 324 chr2L 18926578 18926592 chr2L 18926685 18926698 6 107 3.5 4.0 3.8 1.2 120 chr2L 18926578 intron ssp3 - chr2L 18926638 intron ssp3 - chr2L 18926698 intron ssp3 - chr2L_6_18925001 chr2L_18925001 RAL-707 325 chr2L 18981393 18981421 chr2L 18981476 18981504 6 83 3.0 4.5 3.8 1.2 111 chr2L 18981393 intron Swip-1 - chr2L 18981448 intron Swip-1 - chr2L 18981504 intron Swip-1 - chr2L_6_18980001 chr2L_18980001 RAL-707 326 chr2L 19144928 19145197 chr2L 19145005 19145284 9 80 4.5 1.0 2.8 2.4 356 chr2L 19144928 intron brat + chr2L 19145106 intron brat + chr2L 19145284 intron brat + chr2L_9_19145001 chr2L_19145001 RAL-707 327 chr2L 19147369 19147401 chr2L 19154404 19154436 297 5 7034 2.0 1.5 1.8 1.8 7067 chr2L 19147369 intron brat + chr2L 19150902 intron brat + chr2L 19154436 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-707 328 chr2L 19156885 19156913 chr2L 19156974 19157002 12 89 6.0 1.5 3.8 2.5 117 chr2L 19156885 intron brat + chr2L 19156944 intron brat + chr2L 19157002 intron brat + chr2L_12_19155001 chr2L_19155001 RAL-707 329 chr2L 19211254 19211282 chr2L 19211364 19211390 9 110 1.5 2.0 1.8 3.2 136 chr2L 19211254 intergenic not near genes chr2L 19211322 intergenic not near genes chr2L 19211390 intergenic not near genes chr2L_9_19210001 chr2L_19210001 RAL-707 330 chr2L 19246828 19246849 chr2L 19246909 19246930 8 81 2.5 1.5 2.0 2.7 102 chr2L 19246828 intergenic not near genes chr2L 19246879 intergenic not near genes chr2L 19246930 intergenic not near genes chr2L_8_19245001 chr2L_19245001 RAL-707 331 chr2L 19345014 19345046 chr2L 19357223 19357255 blood 7 12209 2.0 3.5 2.8 1.8 12241 chr2L 19345014 intron dnt - chr2L 19351134 intron dnt - chr2L 19357255 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-707 332 chr2L 19357547 19357569 chr2L 19357635 19357659 9 90 1.5 4.0 2.8 2.4 112 chr2L 19357547 intron dnt - chr2L 19357603 intron dnt - chr2L 19357659 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-707 333 chr2L 19378340 19378364 chr2L 19378423 19378447 5 83 3.5 4.0 3.8 1.0 107 chr2L 19378340 intergenic not near genes chr2L 19378394 intergenic not near genes chr2L 19378447 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-707 334 chr2L 19380508 19380525 chr2L 19380588 19380605 6 80 2.0 2.0 2.0 2.0 97 chr2L 19380508 intergenic CG17350 + chr2L 19380556 intergenic CG17350 + chr2L 19380605 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-707 335 chr2L 19405618 19405642 chr2L 19405708 19405731 10 90 2.0 0.5 1.2 4.5 113 chr2L 19405618 intron Pax - chr2L 19405674 intron Pax - chr2L 19405731 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-707 336 chr2L 19407717 19407740 chr2L 19407913 19407937 10 196 2.0 4.0 3.0 2.5 220 chr2L 19407717 intron Pax - chr2L 19407827 intron Pax - chr2L 19407937 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-707 337 chr2L 19441065 19441089 chr2L 19441142 19441166 19 77 2.0 4.5 3.2 4.5 101 chr2L 19441065 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_19_19440001 chr2L_19440001 RAL-707 338 chr2L 19544592 19544624 chr2L 19544668 19544701 8 77 4.5 3.5 4.0 1.6 109 chr2L 19544592 exon ref(2)P + chr2L 19544646 exon ref(2)P + chr2L 19544701 exon ref(2)P + chr2L_8_19540001 chr2L_19540001 RAL-707 339 chr2L 19620092 19620129 chr2L 19621081 19621117 jockey 12 988 0.5 3.0 1.8 4.3 1025 chr2L 19620092 intron Lar + chr2L 19620604 intron Lar + chr2L 19621117 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-707 340 chr2L 19652572 19652602 chr2L 19674007 19674038 opus 6 21436 2.5 4.0 3.2 1.4 21466 chr2L 19652572 intron Lar + chr2L 19663305 intron Lar + chr2L 19674038 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-707 341 chr2L 19689069 19689090 chr2L 19689173 19689194 6 104 4.5 2.0 3.2 1.4 125 chr2L 19689069 intron Lar + chr2L 19689132 intron Lar + chr2L 19689194 intron Lar + chr2L_6_19685001 chr2L_19685001 RAL-707 342 chr2L 19697138 19697170 chr2L 19697231 19697263 10 93 3.0 4.0 3.5 2.2 125 chr2L 19697138 intron Lar + chr2L 19697200 intron Lar + chr2L 19697263 intron Lar + chr2L_10_19695001 chr2L_19695001 RAL-707 343 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 10 9136 5.0 0.0 2.5 2.9 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-707 344 chr2L 19712694 19712719 chr2L 19712778 19712803 10 84 0.0 3.5 1.8 3.6 109 chr2L 19712694 intron Lar + chr2L 19712748 intron Lar + chr2L 19712803 intron Lar + chr2L_10_19710001 chr2L_19710001 RAL-707 345 chr2L 19737364 19737388 chr2L 19740831 19740857 1360 5 3468 1.5 3.0 2.2 1.6 3493 chr2L 19737364 intergenic Nf-YB + chr2L 19739110 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-707 346 chr2L 19762813 19762835 chr2L 19763051 19763077 pogo 6 241 1.5 1.0 1.2 2.7 264 chr2L 19762813 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763077 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-707 347 chr2L 19773161 19773192 chr2L 19773248 19773279 10 87 2.0 1.0 1.5 4.0 118 chr2L 19773161 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773279 intergenic not near genes chr2L_10_19770001 chr2L_19770001 RAL-707 348 chr2L 19837276 19837310 chr2L 19837356 19837390 16 80 2.0 2.5 2.2 5.0 114 chr2L 19837276 intron sick + chr2L 19837333 intron sick + chr2L 19837390 intron sick + chr2L_16_19835001 chr2L_19835001 RAL-707 349 chr2L 19846247 19846267 chr2L 19846328 19846348 9 80 0.0 3.0 1.5 3.6 101 chr2L 19846247 intron sick + chr2L 19846298 intron sick + chr2L 19846348 intron sick + chr2L_9_19845001 chr2L_19845001 RAL-707 350 chr2L 19911293 19911316 chr2L 19911381 19911404 10 88 3.5 3.5 3.5 2.2 111 chr2L 19911293 intron,3` UTR sick +,CR43097 - chr2L 19911348 intron,3` UTR sick +,CR43097 - chr2L 19911404 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-707 351 chr2L 19964830 19964867 chr2L 19964916 19964953 12 86 5.0 2.0 3.5 2.7 123 chr2L 19964830 intron CG10680 + chr2L 19964892 exon CG10680 + chr2L 19964953 exon CG10680 + chr2L_12_19960001 chr2L_19960001 RAL-707 352 chr2L 19973357 19973377 chr2L 19973434 19973454 6 77 1.5 1.0 1.2 2.7 97 chr2L 19973357 intron CG43861 - chr2L 19973406 intron CG43861 - chr2L 19973454 intron CG43861 - chr2L_6_19970001 chr2L_19970001 RAL-707 353 chr2L 20005885 20005903 chr2L 20010961 20010979 flea 7 5076 1.0 3.5 2.2 2.2 5094 chr2L 20005885 intron CG43861 - chr2L 20008432 intron CG43861 - chr2L 20010979 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-707 354 chr2L 20022091 20022123 chr2L 20022203 20022235 7 113 2.0 2.5 2.2 2.2 144 chr2L 20022091 intergenic not near genes chr2L 20022163 intergenic not near genes chr2L 20022235 intergenic not near genes chr2L_7_20020001 chr2L_20020001 RAL-707 355 chr2L 20041429 20041460 chr2L 20041514 20041540 15 84 5.0 3.5 4.2 2.9 111 chr2L 20041429 intron sNPF + chr2L 20041484 intron sNPF + chr2L 20041540 intron sNPF + chr2L_15_20040001 chr2L_20040001 RAL-707 356 chr2L 20098717 20098741 chr2L 20099001 20099025 8 284 2.0 3.0 2.5 2.3 308 chr2L 20098717 intron Kua + chr2L 20098871 intron Kua + chr2L 20099025 intron Kua + chr2L_8_20095001 chr2L_20095001 RAL-707 357 chr2L 20226257 20226287 chr2L 20226338 20226369 13 82 1.5 4.5 3.0 3.2 112 chr2L 20226257 intergenic not near genes chr2L 20226313 intergenic not near genes chr2L 20226369 intergenic not near genes chr2L_13_20225001 chr2L_20225001 RAL-707 358 chr2L 20236512 20236530 chr2L 20236588 20236606 6 76 3.5 1.5 2.5 1.7 94 chr2L 20236512 intergenic not near genes chr2L 20236559 intergenic not near genes chr2L 20236606 intergenic not near genes chr2L_6_20235001 chr2L_20235001 RAL-707 359 chr2L 20250921 20250957 chr2L 20250999 20251035 9 78 3.0 2.5 2.8 2.4 114 chr2L 20250921 intergenic not near genes chr2L 20250978 intergenic not near genes chr2L 20251035 intergenic not near genes chr2L_9_20250001 chr2L_20250001 RAL-707 360 chr2L 20272118 20272142 chr2L 20282829 20282853 copia 5 10711 1.5 8.0 4.8 0.9 10735 chr2L 20272118 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-707 361 chr2L 20296516 20296537 chr2L 20296596 20296618 5 81 0.0 6.0 3.0 1.2 102 chr2L 20296516 intergenic CR43414 - chr2L 20296567 intergenic CR43414 - chr2L 20296618 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-707 362 chr2L 20300007 20300020 chr2L 20300095 20300096 4 85 3.5 3.0 3.2 1.0 89 chr2L 20300007 intergenic not near genes chr2L 20300052 intergenic not near genes chr2L 20300096 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-707 363 chr2L 20303164 20303192 chr2L 20310632 20310660 blood 7 7468 0.5 3.0 1.8 2.5 7496 chr2L 20303164 intergenic not near genes chr2L 20306912 intergenic not near genes chr2L 20310660 intergenic not near genes chr2L_7_20305001 chr2L_20305001 RAL-707 364 chr2L 20310890 20310918 chr2L 20310969 20310997 6 79 0.5 5.5 3.0 1.5 107 chr2L 20310890 intergenic spir + chr2L 20310944 intergenic spir + chr2L 20310997 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-707 365 chr2L 20322640 20322668 chr2L 20322723 20322751 7 83 1.0 3.5 2.2 2.2 111 chr2L 20322640 intron spir + chr2L 20322696 intron spir + chr2L 20322751 intron spir + chr2L_7_20320001 chr2L_20320001 RAL-707 366 chr2L 20372220 20372259 chr2L 20372470 20372500 pogo 4 246 0.0 3.5 1.8 1.4 280 chr2L 20372220 intergenic Ugt37a1 - chr2L 20372360 intergenic Ugt37a1 - chr2L 20372500 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-707 367 chr2L 20552809 20552819 chr2L 20553047 20553056 8 238 1.0 7.0 4.0 1.6 247 chr2L 20552809 intergenic not near genes chr2L 20552932 intergenic not near genes chr2L 20553056 intergenic not near genes chr2L_8_20550001 chr2L_20550001 RAL-707 368 chr2L 20568670 20568686 chr2L 20569059 20569076 X-element 5 389 3.0 1.5 2.2 1.6 406 chr2L 20568670 intron CR45347 + chr2L 20568873 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-707 369 chr2L 20576219 20576251 chr2L 20583687 20583719 blood 6 7468 1.5 3.0 2.2 1.9 7500 chr2L 20576219 intergenic CR45347 + chr2L 20579969 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-707 370 chr2L 20597091 20597119 chr2L 20597168 20597196 7 77 1.0 3.5 2.2 2.2 105 chr2L 20597091 intron CR44909 - chr2L 20597144 intron CR44909 - chr2L 20597196 intron CR44909 - chr2L_7_20595001 chr2L_20595001 RAL-707 371 chr2L 20611248 20611261 chr2L 20611337 20611349 4 88 0.0 1.0 0.5 2.7 101 chr2L 20611248 intron CR44909 - chr2L 20611298 intron CR44909 - chr2L 20611349 intron CR44909 - chr2L_4_20610001 chr2L_20610001 RAL-707 372 chr2L 20626103 20626125 chr2L 20626209 20626231 7 106 3.0 3.0 3.0 1.8 128 chr2L 20626103 3` UTR CR44909 - chr2L 20626167 3` UTR CR44909 - chr2L 20626231 intergenic CR44909 - chr2L_7_20625001 chr2L_20625001 RAL-707 373 chr2L 20668691 20668717 chr2L 20668767 20668793 5 76 3.0 2.5 2.8 1.3 102 chr2L 20668691 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668793 intron CG31678 - chr2L_5_20665001 chr2L_20665001 RAL-707 374 chr2L 20794904 20794935 chr2L 20795064 20795095 7 160 3.0 0.0 1.5 2.8 191 chr2L 20794904 intron,5` UTR vari -,CR44146 + chr2L 20795000 intron,intron vari -,CR44146 + chr2L 20795095 intron,5` UTR vari -,CR44146 + chr2L_7_20790001 chr2L_20790001 RAL-707 375 chr2L 20818512 20818523 chr2L 20818593 20818604 6 81 4.0 1.5 2.8 1.6 92 chr2L 20818512 exon CheB38a - chr2L 20818558 intergenic CheB38a - chr2L 20818604 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-707 376 chr2L 20835809 20835840 chr2L 20836526 20836557 Quasimodo 5 717 1.5 2.5 2.0 1.7 748 chr2L 20835809 5` UTR Oseg5 - chr2L 20836183 intergenic Oseg5 -,Spn38F - chr2L 20836557 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 RAL-707 377 chr2L 20901477 20901489 chr2L 20902641 20902653 1360 4 1164 0.5 0.5 0.5 2.7 1176 chr2L 20901477 intron,intron CG43739 -,sky - chr2L 20902065 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-707 378 chr2L 20927274 20927295 chr2L 20927539 20927560 6 266 7.5 15.5 11.5 0.5 286 chr2L 20927274 exon CG9272 - chr2L 20927417 exon CG9272 - chr2L 20927560 exon CG9272 - chr2L_6_20925001 chr2L_20925001 RAL-707 379 chr2L 20976641 20976667 chr2L 20981456 20981482 X-element 7 4815 1.5 4.0 2.8 1.8 4841 chr2L 20976641 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981482 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-707 380 chr2L 20984737 20984770 chr2L 20984829 20984862 12 91 3.0 2.0 2.5 3.4 125 chr2L 20984737 intron CG42238 - chr2L 20984800 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_12_20980001 chr2L_20980001 RAL-707 381 chr2L 20986918 20986934 chr2L 20987255 20987269 6 337 1.5 3.5 2.5 1.7 351 chr2L 20986918 intron CG42238 - chr2L 20987094 intron CG42238 - chr2L 20987269 intron CG42238 - chr2L_6_20985001 chr2L_20985001 RAL-707 382 chr2L 20991036 20991068 chr2L 20991114 20991146 9 78 2.5 2.0 2.2 2.8 110 chr2L 20991036 intron CG42238 - chr2L 20991091 intron CG42238 - chr2L 20991146 intron CG42238 - chr2L_9_20990001 chr2L_20990001 RAL-707 383 chr2L 21020272 21020301 chr2L 21023948 21023977 NOF 5 3677 0.5 3.0 1.8 1.8 3705 chr2L 21020272 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023977 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-707 384 chr2L 21041133 21041168 chr2L 21049394 21049424 Tirant 11 8260 2.5 1.5 2.0 3.7 8291 chr2L 21041133 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049424 intron CG42238 - chr2L_11_21045001 chr2L_21045001 RAL-707 385 chr2L 21074923 21074938 chr2L 21075014 21075029 5 91 2.0 1.0 1.5 2.0 106 chr2L 21074923 intergenic tadr + chr2L 21074976 intergenic tadr + chr2L 21075029 intergenic tadr + chr2L_5_21070001 chr2L_21070001 RAL-707 386 chr2L 21113685 21113718 chr2L 21113778 21113811 9 93 1.5 5.0 3.2 2.1 126 chr2L 21113685 intron Nhe2 + chr2L 21113748 intron Nhe2 + chr2L 21113811 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-707 387 chr2L 21119285 21119318 chr2L 21119367 21119402 6 83 1.5 1.5 1.5 2.4 117 chr2L 21119285 intron Nhe2 + chr2L 21119344 intron Nhe2 + chr2L 21119402 intron Nhe2 + chr2L_6_21115001 chr2L_21115001 RAL-707 388 chr2L 21124534 21124563 chr2L 21124620 21124649 12 85 0.0 4.0 2.0 4.0 115 chr2L 21124534 intron Nhe2 + chr2L 21124592 intron Nhe2 + chr2L 21124649 intron Nhe2 + chr2L_12_21120001 chr2L_21120001 RAL-707 389 chr2L 21133288 21133297 chr2L 21133372 21133381 4 84 2.0 3.5 2.8 1.1 93 chr2L 21133288 intergenic Nhe2 + chr2L 21133334 intergenic Nhe2 + chr2L 21133381 intergenic Nhe2 + chr2L_4_21130001 chr2L_21130001 RAL-707 390 chr2L 21233963 21233996 chr2L 21234060 21234093 9 97 4.0 1.5 2.8 2.4 130 chr2L 21233963 intron,5` UTR CG31626 -,CR45713 + chr2L 21234028 intron,5` UTR CG31626 -,CR45713 + chr2L 21234093 intron CG31626 - chr2L_9_21230001 chr2L_21230001 RAL-707 391 chr2L 21286606 21286633 chr2L 21286684 21286711 5 78 0.0 3.0 1.5 2.0 105 chr2L 21286606 exon Mio - chr2L 21286658 intron Mio - chr2L 21286711 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-707 392 chr2L 21345025 21345055 chr2L 21345103 21345132 8 78 3.5 2.5 3.0 2.0 107 chr2L 21345025 intron Tsp39D + chr2L 21345078 intron Tsp39D + chr2L 21345132 intron Tsp39D + chr2L_8_21345001 chr2L_21345001 RAL-707 393 chr2L 21597031 21597057 chr2L 21604775 21604801 roo 6 7744 2.0 1.5 1.8 2.1 7770 chr2L 21597031 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604801 intergenic not near genes chr2L_6_21600001 chr2L_21600001 RAL-707 394 chr2L 21691835 21691852 chr2L 21698305 21698322 Burdock 5 6470 2.5 1.5 2.0 1.7 6487 chr2L 21691835 intron CG31619 + chr2L 21695078 intron CG31619 + chr2L 21698322 intron CG31619 + chr2L_5_21695001 chr2L_21695001 RAL-707 395 chr2L 21778712 21778731 chr2L 21778848 21778870 6 138 2.5 0.5 1.5 2.4 158 chr2L 21778712 intron CG31612 - chr2L 21778791 intron CG31612 - chr2L 21778870 intron CG31612 - chr2L_6_21775001 chr2L_21775001 RAL-707 396 chr2L 21794481 21794499 chr2L 21794557 21794575 7 76 3.0 1.0 2.0 2.3 94 chr2L 21794481 intron CG31612 - chr2L 21794528 intron CG31612 - chr2L 21794575 intron CG31612 - chr2L_7_21790001 chr2L_21790001 RAL-707 397 chr2L 21806231 21806260 chr2L 21806334 21806363 4 103 1.5 2.0 1.8 1.4 132 chr2L 21806231 intergenic not near genes chr2L 21806297 intergenic not near genes chr2L 21806363 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-707 398 chr2L 21812592 21812602 chr2L 21812668 21812672 4 75 6.5 2.0 4.2 0.8 80 chr2L 21812592 intergenic not near genes chr2L 21812632 intergenic not near genes chr2L 21812672 intergenic not near genes chr2L_4_21810001 chr2L_21810001 RAL-707 399 chr2L 21825155 21825177 chr2L 21825589 21825611 6 434 0.5 5.0 2.8 1.6 456 chr2L 21825155 intergenic not near genes chr2L 21825383 intergenic not near genes chr2L 21825611 intergenic not near genes chr2L_6_21825001 chr2L_21825001 RAL-707 400 chr2L 21846439 21846457 chr2L 21846638 21846656 11 199 6.0 5.5 5.8 1.6 217 chr2L 21846439 intergenic not near genes chr2L 21846548 intergenic not near genes chr2L 21846656 intergenic not near genes chr2L_11_21845001 chr2L_21845001 RAL-707 401 chr2L 21864694 21864727 chr2L 21864783 21864816 11 89 1.0 3.0 2.0 3.7 122 chr2L 21864694 intron CR44917 + chr2L 21864755 intron CR44917 + chr2L 21864816 intron CR44917 + chr2L_11_21860001 chr2L_21860001 RAL-707 402 chr2L 21886623 21886655 chr2L 21886701 21886731 10 79 2.0 1.0 1.5 4.0 108 chr2L 21886623 intergenic not near genes chr2L 21886677 intergenic not near genes chr2L 21886731 intergenic not near genes chr2L_10_21885001 chr2L_21885001 RAL-707 403 chr2L 21926771 21926796 chr2L 21926854 21926880 12 84 2.0 3.5 2.8 3.2 109 chr2L 21926771 intergenic not near genes chr2L 21926826 intergenic not near genes chr2L 21926880 intergenic not near genes chr2L_12_21925001 chr2L_21925001 RAL-707 404 chr2L 21981682 21981715 chr2L 21990847 21990880 roo 10 9165 2.5 0.5 1.5 4.0 9198 chr2L 21981682 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-707 405 chr2L 21996942 21996974 chr2L 21997023 21997055 7 81 2.0 2.0 2.0 2.3 113 chr2L 21996942 intergenic not near genes chr2L 21996998 intergenic not near genes chr2L 21997055 intergenic not near genes chr2L_7_21995001 chr2L_21995001 RAL-707 406 chr2L 22165513 22165550 chr2L 22165598 22165635 4 85 1.5 1.5 1.5 1.6 122 chr2L 22165513 3` UTR CG42748 + chr2L 22165574 3` UTR CG42748 + chr2L 22165635 3` UTR CG42748 + chr2L_4_22165001 chr2L_22165001 RAL-707 407 chr2L 22548921 22548942 chr2L 22550146 22550167 1360 6 1225 0.0 4.0 2.0 2.0 1246 chr2L 22548921 intergenic CG17490 + chr2L 22549544 intergenic not near genes chr2L 22550167 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-707 408 chr2L 22558145 22558161 chr2L 22558216 22558237 7 75 1.5 3.0 2.2 2.2 92 chr2L 22558145 intergenic not near genes chr2L 22558191 intergenic not near genes chr2L 22558237 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-707 409 chr2L 22558388 22558415 chr2L 22558699 22558726 8 311 3.5 3.0 3.2 1.9 338 chr2L 22558388 intergenic not near genes chr2L 22558557 intergenic not near genes chr2L 22558726 intergenic not near genes chr2L_8_22555001 chr2L_22555001 RAL-707 410 chr2L 22581977 22581996 chr2L 22583766 22583785 S-element 4 1789 2.0 2.0 2.0 1.3 1808 chr2L 22581977 intron CG17494 + chr2L 22582881 intron CG17494 + chr2L 22583785 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-707 411 chr2L 22719440 22719464 chr2L 22727563 22727587 gypsy2 8 8122 0.5 2.5 1.5 3.2 8147 chr2L 22719440 intron CG40006 - chr2L 22723514 intron CG40006 - chr2L 22727587 intron CG40006 - chr2L_8_22720001 chr2L_22720001 RAL-707 412 chr2L 22776422 22776452 chr2L 22778211 22778240 S-element 7 1789 0.5 1.5 1.0 3.5 1818 chr2L 22776422 intergenic not near genes chr2L 22777331 intergenic not near genes chr2L 22778240 intergenic not near genes chr2L_7_22775001 chr2L_22775001 RAL-707 413 chr2L 22941249 22941278 chr2L 22941331 22941360 10 82 3.0 2.0 2.5 2.9 111 chr2L 22941249 3` UTR lt + chr2L 22941304 3` UTR lt + chr2L 22941360 3` UTR lt + chr2L_10_22940001 chr2L_22940001 RAL-707 414 chr2L 23006503 23006538 chr2L 23007179 23007213 Osvaldo 10 676 3.0 2.0 2.5 2.9 710 chr2L 23006503 intron Cht3 - chr2L 23006858 intron Cht3 - chr2L 23007213 intron Cht3 - chr2L_10_23005001 chr2L_23005001 RAL-707 415 chr2R 529336 529345 chr2R 537961 537970 Max-element 4 8624 3.0 1.5 2.2 1.2 8634 chr2R 529336 intron CG40378 + chr2R 533653 intron CG40378 + chr2R 537970 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-707 416 chr2R 1082370 1082383 chr2R 1087134 1087158 Doc 6 4774 2.5 4.0 3.2 1.4 4788 chr2R 1082370 intron rl + chr2R 1084764 intron rl + chr2R 1087158 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-707 417 chr2R 1340063 1340075 chr2R 1340153 1340165 5 90 11.0 7.0 9.0 0.5 102 chr2R 1340063 intergenic not near genes chr2R 1340114 intergenic not near genes chr2R 1340165 intergenic not near genes chr2R_5_1340001 chr2R_1340001 RAL-707 418 chr2R 2498982 2499014 chr2R 2508129 2508161 roo 10 9147 2.0 1.0 1.5 4.0 9179 chr2R 2498982 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508161 intron MFS17 - chr2R_10_2500001 chr2R_2500001 RAL-707 419 chr2R 2591544 2591559 chr2R 2594219 2594235 roo 4 2675 16.5 13.5 15.0 0.2 2691 chr2R 2591544 intergenic not near genes chr2R 2592890 intergenic not near genes chr2R 2594235 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-707 420 chr2R 3144092 3144107 chr2R 3393370 3393385 Doc 4 249278 15.5 2.5 9.0 0.4 249293 chr2R 3144092 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393385 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-707 421 chr2R 3291929 3292103 chr2R 3915098 3915263 6 623164 7.5 16.0 11.8 0.5 623334 chr2R 3291929 intergenic not near genes chr2R 3603596 intergenic not near genes chr2R 3915263 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-707 422 chr2R 3293751 3293766 chr2R 3293828 3293844 8 78 2.0 1.5 1.8 2.9 93 chr2R 3293751 intergenic not near genes chr2R 3293798 intergenic not near genes chr2R 3293844 intergenic not near genes chr2R_8_3290001 chr2R_3290001 RAL-707 423 chr2R 4602846 4602870 chr2R 4603201 4603225 8 355 2.0 5.0 3.5 1.8 379 chr2R 4602846 intron p120ctn + chr2R 4603036 intron p120ctn + chr2R 4603225 intron p120ctn + chr2R_8_4600001 chr2R_4600001 RAL-707 424 chr2R 4622954 4622987 chr2R 4624112 4624146 1360 6 1159 6.5 1.5 4.0 1.2 1192 chr2R 4622954 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-707 425 chr2R 4688105 4688128 chr2R 4688198 4688221 5 93 1.5 2.0 1.8 1.8 116 chr2R 4688105 intergenic not near genes chr2R 4688163 intergenic not near genes chr2R 4688221 intergenic not near genes chr2R_5_4685001 chr2R_4685001 RAL-707 426 chr2R 4783419 4783452 chr2R 4783497 4783530 11 78 4.5 6.0 5.2 1.8 111 chr2R 4783419 intergenic not near genes chr2R 4783474 intergenic not near genes chr2R 4783530 intergenic not near genes chr2R_11_4780001 chr2R_4780001 RAL-707 427 chr2R 4838873 4838888 chr2R 4840395 4840411 transib2 8 1523 6.5 3.5 5.0 1.3 1538 chr2R 4838873 intergenic not near genes chr2R 4839642 intergenic not near genes chr2R 4840411 intergenic not near genes chr2R_8_4835001 chr2R_4835001 RAL-707 428 chr2R 4942070 4942085 chr2R 4942188 4942210 4 123 2.5 0.5 1.5 1.6 140 chr2R 4942070 intron Ir41a + chr2R 4942140 intron Ir41a + chr2R 4942210 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-707 429 chr2R 5008877 5008888 chr2R 5009944 5009957 4 1068 0.0 3.5 1.8 1.4 1080 chr2R 5008877 intron Ir41a + chr2R 5009417 intron Ir41a + chr2R 5009957 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-707 430 chr2R 5028519 5028523 chr2R 5028712 5028716 4 192 7.5 0.0 3.8 0.8 197 chr2R 5028519 intergenic not near genes chr2R 5028618 intergenic not near genes chr2R 5028716 intergenic not near genes chr2R_4_5025001 chr2R_5025001 RAL-707 431 chr2R 5209790 5209815 chr2R 5210284 5210304 11 494 4.5 3.0 3.8 2.3 514 chr2R 5209790 intron Nipped-A - chr2R 5210047 intron Nipped-A - chr2R 5210304 intron Nipped-A - chr2R_11_5210001 chr2R_5210001 RAL-707 432 chr2R 5303492 5303522 chr2R 5303580 5303610 4 87 12.0 12.0 12.0 0.3 118 chr2R 5303492 intergenic not near genes chr2R 5303551 intergenic not near genes chr2R 5303610 intergenic not near genes chr2R_4_5300001 chr2R_5300001 RAL-707 433 chr2R 5342830 5342852 chr2R 5342927 5342949 6 97 2.5 2.5 2.5 1.7 119 chr2R 5342830 intergenic not near genes chr2R 5342890 intergenic not near genes chr2R 5342949 intergenic not near genes chr2R_6_5340001 chr2R_5340001 RAL-707 434 chr2R 5460527 5460557 chr2R 5460627 5460661 10 103 1.5 2.5 2.0 3.3 134 chr2R 5460527 intergenic not near genes chr2R 5460594 intergenic not near genes chr2R 5460661 intergenic not near genes chr2R_10_5460001 chr2R_5460001 RAL-707 435 chr2R 5476356 5476371 chr2R 5476900 5476914 6 544 3.5 2.5 3.0 1.5 558 chr2R 5476356 intron CG30440 - chr2R 5476635 intron CG30440 - chr2R 5476914 intron CG30440 - chr2R_6_5475001 chr2R_5475001 RAL-707 436 chr2R 5491662 5491688 chr2R 5491755 5491781 10 93 4.5 2.5 3.5 2.2 119 chr2R 5491662 intron CG30440 - chr2R 5491722 intron CG30440 - chr2R 5491781 intron CG30440 - chr2R_10_5490001 chr2R_5490001 RAL-707 437 chr2R 5717040 5717056 chr2R 5717116 5717132 6 76 0.5 1.0 0.8 3.3 92 chr2R 5717040 intron ap - chr2R 5717086 intron ap - chr2R 5717132 intron ap - chr2R_6_5715001 chr2R_5715001 RAL-707 438 chr2R 5760703 5760720 chr2R 5760788 5760807 6 86 2.0 1.5 1.8 2.1 104 chr2R 5760703 intergenic Gp210 +,CG7791 - chr2R 5760755 intergenic Gp210 +,CG7791 - chr2R 5760807 intergenic Gp210 +,CG7791 - chr2R_6_5760001 chr2R_5760001 RAL-707 439 chr2R 5790463 5790490 chr2R 5790548 5790575 6 85 2.5 1.0 1.8 2.1 112 chr2R 5790463 intergenic not near genes chr2R 5790519 intergenic not near genes chr2R 5790575 intergenic not near genes chr2R_6_5790001 chr2R_5790001 RAL-707 440 chr2R 5861290 5861317 chr2R 5861411 5861437 5 119 3.5 2.0 2.8 1.3 147 chr2R 5861290 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861437 intergenic not near genes chr2R_5_5860001 chr2R_5860001 RAL-707 441 chr2R 5869274 5869309 chr2R 5874350 5874385 flea 8 5076 1.0 0.5 0.8 4.4 5111 chr2R 5869274 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874385 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-707 442 chr2R 5878936 5878949 chr2R 5879016 5879028 4 79 2.5 3.0 2.8 1.1 92 chr2R 5878936 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879028 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-707 443 chr2R 5885370 5885373 chr2R 5885499 5885502 5 129 3.0 2.0 2.5 1.4 132 chr2R 5885370 5` UTR CR44125 + chr2R 5885436 5` UTR CR44125 + chr2R 5885502 5` UTR CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-707 444 chr2R 5933796 5933825 chr2R 5933873 5933902 13 77 3.0 3.0 3.0 3.2 106 chr2R 5933796 intergenic not near genes chr2R 5933849 intergenic not near genes chr2R 5933902 intergenic not near genes chr2R_13_5930001 chr2R_5930001 RAL-707 445 chr2R 5945797 5945834 chr2R 5945890 5945927 8 93 2.5 3.0 2.8 2.1 130 chr2R 5945797 intergenic not near genes chr2R 5945862 intergenic not near genes chr2R 5945927 intergenic not near genes chr2R_8_5945001 chr2R_5945001 RAL-707 446 chr2R 5991934 5991966 chr2R 5992022 5992054 7 88 1.0 2.0 1.5 2.8 120 chr2R 5991934 intron Src42A + chr2R 5991994 intron Src42A + chr2R 5992054 intron Src42A + chr2R_7_5990001 chr2R_5990001 RAL-707 447 chr2R 6033441 6033475 chr2R 6033525 6033560 9 85 1.0 0.5 0.8 5.0 119 chr2R 6033441 intron SCAP - chr2R 6033500 intron SCAP - chr2R 6033560 intron SCAP - chr2R_9_6030001 chr2R_6030001 RAL-707 448 chr2R 6065419 6065443 chr2R 6065496 6065522 9 79 3.0 6.5 4.8 1.6 103 chr2R 6065419 intron CCHa2-R + chr2R 6065470 intron CCHa2-R + chr2R 6065522 intron CCHa2-R + chr2R_9_6065001 chr2R_6065001 RAL-707 449 chr2R 6088379 6088386 chr2R 6088472 6088479 4 93 3.0 5.5 4.2 0.8 100 chr2R 6088379 intergenic not near genes chr2R 6088429 intergenic not near genes chr2R 6088479 intergenic not near genes chr2R_4_6085001 chr2R_6085001 RAL-707 450 chr2R 6096718 6096751 chr2R 6101916 6101949 BS 10 5198 2.0 3.0 2.5 2.9 5231 chr2R 6096718 intron EcR - chr2R 6099334 intron EcR - chr2R 6101949 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-707 451 chr2R 6206774 6206799 chr2R 6206850 6206874 5 75 3.5 0.5 2.0 1.7 100 chr2R 6206774 intergenic CG17994 - chr2R 6206824 intergenic CG17994 - chr2R 6206874 intergenic CG17994 - chr2R_5_6205001 chr2R_6205001 RAL-707 452 chr2R 6530784 6530798 chr2R 6530864 6530878 4 80 2.0 4.0 3.0 1.0 94 chr2R 6530784 intron jing + chr2R 6530831 intron jing + chr2R 6530878 intron jing + chr2R_4_6530001 chr2R_6530001 RAL-707 453 chr2R 6539821 6539848 chr2R 6539944 6539963 4 120 3.5 0.0 1.8 1.4 142 chr2R 6539821 intron jing + chr2R 6539892 intron jing + chr2R 6539963 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-707 454 chr2R 6592217 6592240 chr2R 6592339 6592359 6 122 6.5 3.0 4.8 1.0 142 chr2R 6592217 intron jing + chr2R 6592288 intron jing + chr2R 6592359 intron jing + chr2R_6_6590001 chr2R_6590001 RAL-707 455 chr2R 6622143 6622176 chr2R 6622615 6622648 invader1 18 472 5.0 1.0 3.0 4.5 505 chr2R 6622143 intergenic not near genes chr2R 6622396 intergenic not near genes chr2R 6622648 intergenic not near genes chr2R_18_6620001 chr2R_6620001 RAL-707 456 chr2R 6651359 6651395 chr2R 6651473 6651509 10 114 2.5 1.0 1.8 3.6 150 chr2R 6651359 intron debcl + chr2R 6651434 intron debcl + chr2R 6651509 intron debcl + chr2R_10_6650001 chr2R_6650001 RAL-707 457 chr2R 6664190 6664206 chr2R 6665991 6666007 S-element 7 1801 3.5 1.5 2.5 2.0 1817 chr2R 6664190 intron,3` UTR Adf1 +,CR45128 - chr2R 6665098 intron Adf1 + chr2R 6666007 intron Adf1 + chr2R_7_6665001 chr2R_6665001 RAL-707 458 chr2R 6712586 6712601 chr2R 6712683 6712697 8 97 6.5 3.0 4.8 1.4 111 chr2R 6712586 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_8_6710001 chr2R_6710001 RAL-707 459 chr2R 6713919 6713934 chr2R 6714016 6714031 4 97 0.0 3.5 1.8 1.4 112 chr2R 6713919 intron,intron CG3409 -,CG45092 - chr2R 6713975 intron,intron CG3409 -,CG45092 - chr2R 6714031 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-707 460 chr2R 6738847 6738877 chr2R 6738929 6738959 13 82 2.5 4.0 3.2 3.1 112 chr2R 6738847 intron l(2)01289 - chr2R 6738903 intron l(2)01289 - chr2R 6738959 intron l(2)01289 - chr2R_13_6735001 chr2R_6735001 RAL-707 461 chr2R 6782540 6782572 chr2R 6782637 6782669 7 97 3.0 2.0 2.5 2.0 129 chr2R 6782540 intron Epac - chr2R 6782604 intron Epac - chr2R 6782669 intron Epac - chr2R_7_6780001 chr2R_6780001 RAL-707 462 chr2R 6825434 6825468 chr2R 6825527 6825561 11 93 2.0 1.5 1.8 3.9 127 chr2R 6825434 intergenic not near genes chr2R 6825498 intergenic not near genes chr2R 6825561 intergenic not near genes chr2R_11_6825001 chr2R_6825001 RAL-707 463 chr2R 6846311 6846325 chr2R 6846387 6846401 4 76 1.0 2.5 1.8 1.4 90 chr2R 6846311 intergenic not near genes chr2R 6846356 intergenic not near genes chr2R 6846401 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-707 464 chr2R 6876225 6876251 chr2R 6876307 6876333 10 82 3.5 6.0 4.8 1.7 108 chr2R 6876225 intron,intron CR44169 +,Spn42Da - chr2R 6876279 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_10_6875001 chr2R_6875001 RAL-707 465 chr2R 6961890 6961912 chr2R 6961975 6961996 5 85 1.5 2.0 1.8 1.8 106 chr2R 6961890 intron,intron mim -,CheB42c - chr2R 6961943 intron,intron mim -,CheB42c - chr2R 6961996 intron,intron mim -,CheB42c - chr2R_5_6960001 chr2R_6960001 RAL-707 466 chr2R 7067968 7067998 chr2R 7068052 7068082 7 84 3.0 2.0 2.5 2.0 114 chr2R 7067968 intergenic CG12836 + chr2R 7068025 intergenic CG12836 + chr2R 7068082 intergenic CG12836 + chr2R_7_7065001 chr2R_7065001 RAL-707 467 chr2R 7120149 7120154 chr2R 7120248 7120253 4 99 3.0 3.5 3.2 1.0 104 chr2R 7120149 intron esn + chr2R 7120201 intron esn + chr2R 7120253 intron esn + chr2R_4_7120001 chr2R_7120001 RAL-707 468 chr2R 7173796 7173811 chr2R 7174049 7174064 5 253 2.0 4.0 3.0 1.2 268 chr2R 7173796 intron pk + chr2R 7173930 intron pk + chr2R 7174064 intron pk + chr2R_5_7170001 chr2R_7170001 RAL-707 469 chr2R 7194846 7194847 chr2R 13364796 13364797 4 6169950 12.0 4.5 8.2 0.4 6169951 chr2R 7194846 intron pk + chr2R 10279822 intron CAP + chr2R 13364797 intergenic not near genes chr2R_4_10275001 chr2R_10275001 RAL-707 470 chr2R 7196573 7196594 chr2R 7201346 7201369 F-element 7 4775 2.0 3.5 2.8 1.8 4796 chr2R 7196573 intron pk + chr2R 7198971 intron pk + chr2R 7201369 intron pk + chr2R_7_7195001 chr2R_7195001 RAL-707 471 chr2R 7208034 7208062 chr2R 7208120 7208148 7 86 3.0 4.0 3.5 1.6 114 chr2R 7208034 intron pk + chr2R 7208091 intron pk + chr2R 7208148 intron pk + chr2R_7_7205001 chr2R_7205001 RAL-707 472 chr2R 7209870 7209874 chr2R 7217630 7217635 roo 4 7761 0.0 1.5 0.8 2.2 7765 chr2R 7209870 intron pk + chr2R 7213752 intron pk + chr2R 7217635 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-707 473 chr2R 7235828 7235850 chr2R 7240920 7240942 jockey 14 5092 3.5 4.0 3.8 2.9 5114 chr2R 7235828 intergenic not near genes chr2R 7238385 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_14_7235001 chr2R_7235001 RAL-707 474 chr2R 7248732 7248752 chr2R 7250319 7250339 8 1587 27.0 26.5 26.8 0.3 1607 chr2R 7248732 intergenic Gadd45 + chr2R 7249536 exon Gadd45 + chr2R 7250339 3` UTR Gadd45 + chr2R_8_7245001 chr2R_7245001 RAL-707 475 chr2R 7253557 7253572 chr2R 7253872 7253887 5 315 2.5 3.0 2.8 1.3 330 chr2R 7253557 intergenic not near genes chr2R 7253722 intergenic not near genes chr2R 7253887 intergenic not near genes chr2R_5_7250001 chr2R_7250001 RAL-707 476 chr2R 7269831 7269864 chr2R 7273939 7273972 22 4109 34.5 36.5 35.5 0.6 4141 chr2R 7269831 intergenic not near genes chr2R 7271902 intergenic Br140 - chr2R 7273972 exon Br140 - chr2R_22_7270001 chr2R_7270001 RAL-707 477 chr2R 7325233 7325242 chr2R 7325743 7325752 4 510 1.5 3.0 2.2 1.2 519 chr2R 7325233 intron Dscam1 - chr2R 7325492 intron Dscam1 - chr2R 7325752 intron Dscam1 - chr2R_4_7325001 chr2R_7325001 RAL-707 478 chr2R 7389570 7389598 chr2R 7389672 7389699 5 102 2.0 3.0 2.5 1.4 129 chr2R 7389570 intron CG11107 + chr2R 7389634 intron CG11107 + chr2R 7389699 intron CG11107 + chr2R_5_7385001 chr2R_7385001 RAL-707 479 chr2R 7418148 7418167 chr2R 7418226 7418246 5 79 3.5 4.5 4.0 1.0 98 chr2R 7418148 intergenic not near genes chr2R 7418197 intergenic not near genes chr2R 7418246 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-707 480 chr2R 7434895 7434912 chr2R 7439196 7439213 Juan 4 4301 3.0 4.5 3.8 0.8 4318 chr2R 7434895 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439213 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-707 481 chr2R 7608408 7608435 chr2R 7613611 7613638 I-element 8 5203 2.5 0.0 1.2 3.6 5230 chr2R 7608408 intron CG1358 - chr2R 7611023 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_8_7610001 chr2R_7610001 RAL-707 482 chr2R 7815681 7815695 chr2R 7822150 7822164 Burdock 6 6469 6.0 1.5 3.8 1.2 6483 chr2R 7815681 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822164 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-707 483 chr2R 7869190 7869221 chr2R 7873976 7874006 Doc 14 4786 3.0 7.0 5.0 2.3 4816 chr2R 7869190 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874006 intron Dgk - chr2R_14_7870001 chr2R_7870001 RAL-707 484 chr2R 7910152 7910174 chr2R 7910237 7910259 6 85 8.0 5.0 6.5 0.8 107 chr2R 7910152 intron CG30377 + chr2R 7910206 intron CG30377 + chr2R 7910259 intron CG30377 + chr2R_6_7910001 chr2R_7910001 RAL-707 485 chr2R 7920002 7920007 chr2R 7924526 7924531 6 4524 14.0 28.5 21.2 0.3 4529 chr2R 7920002 intron Cul1 + chr2R 7922266 exon Or43b - chr2R 7924531 exon Kdm4A - chr2R_6_7920001 chr2R_7920001 RAL-707 486 chr2R 8015659 8015682 chr2R 8017678 8017705 7 2022 2.0 7.0 4.5 1.3 2046 chr2R 8015659 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-707 487 chr2R 8236044 8236064 chr2R 8236125 8236144 4 80 1.5 2.5 2.0 1.3 100 chr2R 8236044 intergenic not near genes chr2R 8236094 intergenic not near genes chr2R 8236144 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-707 488 chr2R 8330868 8330893 chr2R 8331354 8331379 roo 9 486 2.0 3.5 2.8 2.4 511 chr2R 8330868 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-707 489 chr2R 8398206 8398240 chr2R 8402987 8403021 Doc 7 4780 4.5 1.0 2.8 1.8 4815 chr2R 8398206 intron CG2121 - chr2R 8400614 intron CG2121 - chr2R 8403021 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-707 490 chr2R 8408842 8408862 chr2R 8408968 8408990 6 127 3.0 3.0 3.0 1.5 148 chr2R 8408842 intron CG2121 - chr2R 8408916 intron CG2121 - chr2R 8408990 intron CG2121 - chr2R_6_8405001 chr2R_8405001 RAL-707 491 chr2R 8489742 8489756 chr2R 8489821 8489835 4 79 1.5 3.0 2.2 1.2 93 chr2R 8489742 intron mtt - chr2R 8489788 intron mtt - chr2R 8489835 intron mtt - chr2R_4_8485001 chr2R_8485001 RAL-707 492 chr2R 8508757 8508789 chr2R 8508840 8508872 4 82 2.0 0.5 1.2 1.8 115 chr2R 8508757 intron mtt - chr2R 8508814 intron mtt - chr2R 8508872 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-707 493 chr2R 8540599 8540616 chr2R 8540818 8540835 4 218 4.5 2.0 3.2 1.0 236 chr2R 8540599 intergenic not near genes chr2R 8540717 intergenic not near genes chr2R 8540835 intergenic not near genes chr2R_4_8540001 chr2R_8540001 RAL-707 494 chr2R 8612594 8612610 chr2R 8612671 8612687 5 77 0.0 2.5 1.2 2.3 93 chr2R 8612594 intron CG8642 - chr2R 8612640 intron CG8642 - chr2R 8612687 intron CG8642 - chr2R_5_8610001 chr2R_8610001 RAL-707 495 chr2R 8637260 8637288 chr2R 8637818 8637846 8 558 0.5 2.0 1.2 3.6 586 chr2R 8637260 intergenic not near genes chr2R 8637553 intergenic not near genes chr2R 8637846 intergenic not near genes chr2R_8_8635001 chr2R_8635001 RAL-707 496 chr2R 8658242 8658259 chr2R 8658312 8658333 5 74 0.5 2.0 1.2 2.3 91 chr2R 8658242 intron ptc + chr2R 8658288 intron ptc + chr2R 8658333 intron ptc + chr2R_5_8655001 chr2R_8655001 RAL-707 497 chr2R 8722766 8722795 chr2R 8723007 8723036 pogo 9 240 3.5 6.0 4.8 1.6 270 chr2R 8722766 intron CG14767 - chr2R 8722901 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-707 498 chr2R 8784883 8784915 chr2R 8785349 8785382 7 466 1.5 2.0 1.8 2.5 499 chr2R 8784883 intergenic not near genes chr2R 8785132 intergenic not near genes chr2R 8785382 intergenic not near genes chr2R_7_8785001 chr2R_8785001 RAL-707 499 chr2R 8833425 8833451 chr2R 8833507 8833533 12 82 3.0 1.0 2.0 4.0 108 chr2R 8833425 intron sns + chr2R 8833479 intron sns + chr2R 8833533 intron sns + chr2R_12_8830001 chr2R_8830001 RAL-707 500 chr2R 8882126 8882153 chr2R 8882235 8882261 16 108 7.0 7.0 7.0 2.0 135 chr2R 8882126 intron RyR + chr2R 8882194 intron RyR + chr2R 8882261 intron RyR + chr2R_16_8880001 chr2R_8880001 RAL-707 501 chr2R 8967419 8967687 chr2R 8967566 8967804 12 144 6.0 1.0 3.5 2.7 385 chr2R 8967419 intron CG8216 - chr2R 8967612 intron CG8216 - chr2R 8967804 intron CG8216 - chr2R_12_8965001 chr2R_8965001 RAL-707 502 chr2R 8995936 8995963 chr2R 8996023 8996050 11 87 3.5 2.0 2.8 2.9 114 chr2R 8995936 exon Np - chr2R 8995993 intron Np - chr2R 8996050 intron Np - chr2R_11_8995001 chr2R_8995001 RAL-707 503 chr2R 9031975 9032010 chr2R 9032053 9032088 14 78 1.0 5.0 3.0 3.5 113 chr2R 9031975 intergenic not near genes chr2R 9032032 intergenic not near genes chr2R 9032088 intergenic not near genes chr2R_14_9030001 chr2R_9030001 RAL-707 504 chr2R 9052709 9052731 chr2R 9052790 9052812 12 81 0.0 2.0 1.0 6.0 103 chr2R 9052709 intron CG13743 - chr2R 9052760 intron CG13743 - chr2R 9052812 intron CG13743 - chr2R_12_9050001 chr2R_9050001 RAL-707 505 chr2R 9055435 9055461 chr2R 9055563 9055589 6 127 5.5 2.0 3.8 1.2 154 chr2R 9055435 intron CG13743 - chr2R 9055512 intron CG13743 - chr2R 9055589 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-707 506 chr2R 9212702 9212721 chr2R 9213188 9213207 roo 7 485 4.0 4.0 4.0 1.4 505 chr2R 9212702 intergenic CR45309 + chr2R 9212954 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-707 507 chr2R 9368130 9368155 chr2R 9368206 9368231 7 75 2.0 0.0 1.0 3.5 101 chr2R 9368130 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368231 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-707 508 chr2R 9388653 9388690 chr2R 9388740 9388777 14 87 1.0 3.0 2.0 4.7 124 chr2R 9388653 5` UTR CG13954 - chr2R 9388715 5` UTR CG13954 - chr2R 9388777 5` UTR CG13954 - chr2R_14_9385001 chr2R_9385001 RAL-707 509 chr2R 9401621 9401652 chr2R 9401708 9401739 12 87 3.5 3.0 3.2 2.9 118 chr2R 9401621 intron wun - chr2R 9401680 intron wun - chr2R 9401739 intron wun - chr2R_12_9400001 chr2R_9400001 RAL-707 510 chr2R 9408230 9408254 chr2R 9408313 9408337 4 83 1.5 0.5 1.0 2.0 107 chr2R 9408230 intron wun - chr2R 9408284 intron wun - chr2R 9408337 intron wun - chr2R_4_9405001 chr2R_9405001 RAL-707 511 chr2R 9415862 9415883 chr2R 9415948 9415969 8 86 3.5 2.0 2.8 2.1 107 chr2R 9415862 intron wun2 + chr2R 9415916 intron wun2 + chr2R 9415969 intron wun2 + chr2R_8_9415001 chr2R_9415001 RAL-707 512 chr2R 9509435 9509453 chr2R 9509519 9509536 5 84 3.5 2.0 2.8 1.3 101 chr2R 9509435 intron brp + chr2R 9509486 intron brp + chr2R 9509536 intron brp + chr2R_5_9505001 chr2R_9505001 RAL-707 513 chr2R 9510665 9510693 chr2R 9510781 9510809 6 116 1.5 3.5 2.5 1.7 144 chr2R 9510665 intron brp + chr2R 9510737 intron brp + chr2R 9510809 intron brp + chr2R_6_9510001 chr2R_9510001 RAL-707 514 chr2R 9605831 9605857 chr2R 9605938 9605964 6 107 2.5 2.0 2.2 1.9 133 chr2R 9605831 3` UTR CR44285 - chr2R 9605898 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605964 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_6_9605001 chr2R_9605001 RAL-707 515 chr2R 9697244 9697275 chr2R 9697333 9697364 5 89 0.0 2.0 1.0 2.5 120 chr2R 9697244 intergenic not near genes chr2R 9697304 intergenic not near genes chr2R 9697364 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-707 516 chr2R 9945434 9945446 chr2R 9945630 9945642 BS 6 196 6.5 1.0 3.8 1.2 208 chr2R 9945434 intron Mef2 - chr2R 9945538 intron Mef2 - chr2R 9945642 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-707 517 chr2R 10005559 10005571 chr2R 10005656 10005666 4 96 2.5 1.0 1.8 1.4 107 chr2R 10005559 intron Pka-R2 - chr2R 10005612 intron Pka-R2 - chr2R 10005666 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-707 518 chr2R 10005851 10005879 chr2R 10007016 10007044 1360 15 1164 4.0 5.0 4.5 2.7 1193 chr2R 10005851 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007044 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-707 519 chr2R 10053525 10053548 chr2R 10053627 10053651 9 103 2.5 1.5 2.0 3.0 126 chr2R 10053525 intron magu + chr2R 10053588 intron magu + chr2R 10053651 intron magu + chr2R_9_10050001 chr2R_10050001 RAL-707 520 chr2R 10122742 10122749 chr2R 10122952 10122958 4 210 1.5 3.0 2.2 1.2 216 chr2R 10122742 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122958 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-707 521 chr2R 10129688 10129712 chr2R 10130088 10130112 8 400 2.0 1.0 1.5 3.2 424 chr2R 10129688 intron gem + chr2R 10129900 intron gem + chr2R 10130112 intron gem + chr2R_8_10125001 chr2R_10125001 RAL-707 522 chr2R 10176877 10176903 chr2R 10186044 10186070 roo 4 9167 3.5 1.0 2.2 1.2 9193 chr2R 10176877 intron KCNQ - chr2R 10181474 intron KCNQ - chr2R 10186070 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-707 523 chr2R 10197404 10197411 chr2R 10197488 10197497 4 85 0.5 3.0 1.8 1.4 93 chr2R 10197404 3` UTR CG34221 - chr2R 10197450 3` UTR CG34221 - chr2R 10197497 3` UTR CG34221 - chr2R_4_10195001 chr2R_10195001 RAL-707 524 chr2R 10203645 10203659 chr2R 10203728 10203744 6 85 2.5 1.5 2.0 2.0 99 chr2R 10203645 intergenic not near genes chr2R 10203694 intergenic not near genes chr2R 10203744 intergenic not near genes chr2R_6_10200001 chr2R_10200001 RAL-707 525 chr2R 10216200 10216212 chr2R 10216278 10216290 4 78 3.0 4.0 3.5 0.9 90 chr2R 10216200 intron,intron CG12912 -,Hr46 - chr2R 10216245 intron,intron CG12912 -,Hr46 - chr2R 10216290 intron,intron CG12912 -,Hr46 - chr2R_4_10215001 chr2R_10215001 RAL-707 526 chr2R 10225737 10225750 chr2R 10225818 10225832 8 82 1.0 2.0 1.5 3.2 95 chr2R 10225737 intron,intron CG12912 -,Hr46 - chr2R 10225784 intron,intron CG12912 -,Hr46 - chr2R 10225832 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-707 527 chr2R 10266495 10266527 chr2R 10266586 10266618 7 91 3.0 2.0 2.5 2.0 123 chr2R 10266495 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266618 intron CG12910 + chr2R_7_10265001 chr2R_10265001 RAL-707 528 chr2R 10303530 10303561 chr2R 10303630 10303661 10 100 3.5 3.5 3.5 2.2 131 chr2R 10303530 intron CAP + chr2R 10303596 intron CAP + chr2R 10303661 intron CAP + chr2R_10_10300001 chr2R_10300001 RAL-707 529 chr2R 10313321 10313351 chr2R 10313409 10313439 8 88 0.5 2.0 1.2 3.6 118 chr2R 10313321 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_8_10310001 chr2R_10310001 RAL-707 530 chr2R 10318515 10318539 chr2R 10318601 10318625 7 86 1.0 2.5 1.8 2.5 110 chr2R 10318515 intron Ndg + chr2R 10318570 intron Ndg + chr2R 10318625 intron Ndg + chr2R_7_10315001 chr2R_10315001 RAL-707 531 chr2R 10319716 10319737 chr2R 10319807 10319829 7 92 6.0 3.5 4.8 1.2 113 chr2R 10319716 intron Ndg + chr2R 10319772 intron Ndg + chr2R 10319829 intron Ndg + chr2R_7_10315001 chr2R_10315001 RAL-707 532 chr2R 10387982 10388002 chr2R 10388079 10388099 5 97 0.0 5.5 2.8 1.3 117 chr2R 10387982 intron CG42732 - chr2R 10388040 intron CG42732 - chr2R 10388099 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-707 533 chr2R 10429023 10429050 chr2R 10429099 10429127 11 77 2.0 0.5 1.2 5.0 104 chr2R 10429023 intergenic not near genes chr2R 10429075 intergenic not near genes chr2R 10429127 intergenic not near genes chr2R_11_10425001 chr2R_10425001 RAL-707 534 chr2R 10556366 10556383 chr2R 10556448 10556465 6 82 0.0 7.5 3.8 1.2 99 chr2R 10556366 intergenic not near genes chr2R 10556416 intergenic not near genes chr2R 10556465 intergenic not near genes chr2R_6_10555001 chr2R_10555001 RAL-707 535 chr2R 10562992 10563250 chr2R 10563069 10563348 5 82 0.0 0.0 0.0 5.0 356 chr2R 10562992 intron psq + chr2R 10563170 intron psq + chr2R 10563348 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-707 536 chr2R 10563278 10563574 chr2R 10563376 10563652 5 83 2.5 5.0 3.8 1.0 374 chr2R 10563278 intron psq + chr2R 10563465 intron psq + chr2R 10563652 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-707 537 chr2R 10585574 10585590 chr2R 10594156 10594173 Tirant 6 8583 3.0 4.0 3.5 1.3 8599 chr2R 10585574 intron psq + chr2R 10589874 intron psq + chr2R 10594173 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-707 538 chr2R 10622351 10622365 chr2R 10637115 10637125 mdg1 8 14764 2.5 2.5 2.5 2.3 14774 chr2R 10622351 intron CG11883 + chr2R 10629738 intron CG11883 + chr2R 10637125 intron CG11883 + chr2R_8_10625001 chr2R_10625001 RAL-707 539 chr2R 10644064 10644091 chr2R 10644142 10644169 7 78 0.5 0.5 0.5 4.7 105 chr2R 10644064 intron Git - chr2R 10644116 intron Git - chr2R 10644169 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-707 540 chr2R 10687733 10687745 chr2R 10687967 10687977 4 234 0.0 1.0 0.5 2.7 244 chr2R 10687733 intron stan + chr2R 10687855 intron stan + chr2R 10687977 intron stan + chr2R_4_10685001 chr2R_10685001 RAL-707 541 chr2R 10790144 10790175 chr2R 10790232 10790263 6 88 1.0 2.0 1.5 2.4 119 chr2R 10790144 intron CG33144 - chr2R 10790204 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_6_10790001 chr2R_10790001 RAL-707 542 chr2R 10796017 10796043 chr2R 10796099 10796125 11 81 1.5 4.0 2.8 2.9 108 chr2R 10796017 intron CG33144 - chr2R 10796071 intron CG33144 - chr2R 10796125 intron CG33144 - chr2R_11_10795001 chr2R_10795001 RAL-707 543 chr2R 10827333 10827342 chr2R 10827421 10827430 4 88 2.0 3.0 2.5 1.1 97 chr2R 10827333 exon CG12325 + chr2R 10827382 3` UTR CG12325 + chr2R 10827430 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_4_10825001 chr2R_10825001 RAL-707 544 chr2R 10863126 10863157 chr2R 10863209 10863240 12 83 2.5 2.0 2.2 3.8 114 chr2R 10863126 intron CG30015 - chr2R 10863183 intron CG30015 - chr2R 10863240 intron CG30015 - chr2R_12_10860001 chr2R_10860001 RAL-707 545 chr2R 10979656 10979681 chr2R 10980126 10980148 297 4 468 2.0 1.5 1.8 1.4 492 chr2R 10979656 intergenic not near genes chr2R 10979902 intergenic not near genes chr2R 10980148 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-707 546 chr2R 11009818 11009840 chr2R 11018990 11019014 roo 11 9174 0.5 3.0 1.8 3.9 9196 chr2R 11009818 intron luna - chr2R 11014416 intron luna - chr2R 11019014 intron luna - chr2R_11_11010001 chr2R_11010001 RAL-707 547 chr2R 11076034 11076050 chr2R 11076324 11076342 4 290 3.0 7.5 5.2 0.6 308 chr2R 11076034 intron luna - chr2R 11076188 intron luna - chr2R 11076342 intron luna - chr2R_4_11075001 chr2R_11075001 RAL-707 548 chr2R 11093719 11093746 chr2R 11093874 11093901 7 155 0.5 2.0 1.2 3.2 182 chr2R 11093719 intron luna - chr2R 11093810 intron luna - chr2R 11093901 intron luna - chr2R_7_11090001 chr2R_11090001 RAL-707 549 chr2R 11111158 11111175 chr2R 11111294 11111312 5 137 2.5 2.0 2.2 1.6 154 chr2R 11111158 intron luna - chr2R 11111235 intron luna - chr2R 11111312 intron luna - chr2R_5_11110001 chr2R_11110001 RAL-707 550 chr2R 11133415 11133447 chr2R 11133515 11133547 7 100 1.5 2.0 1.8 2.5 132 chr2R 11133415 intergenic not near genes chr2R 11133481 intergenic not near genes chr2R 11133547 intergenic not near genes chr2R_7_11130001 chr2R_11130001 RAL-707 551 chr2R 11207813 11207845 chr2R 11208005 11208037 BS 9 192 1.5 2.5 2.0 3.0 224 chr2R 11207813 intron shn + chr2R 11207925 intron shn + chr2R 11208037 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-707 552 chr2R 11249171 11249186 chr2R 11249297 11249311 6 126 3.0 0.0 1.5 2.4 140 chr2R 11249171 intergenic CG43112 + chr2R 11249241 intergenic CG43112 + chr2R 11249311 intergenic CG43112 + chr2R_6_11245001 chr2R_11245001 RAL-707 553 chr2R 11260517 11260542 chr2R 11260623 11260648 8 105 0.5 3.5 2.0 2.7 131 chr2R 11260517 intergenic not near genes chr2R 11260582 intergenic Cpr47Ed - chr2R 11260648 intergenic Cpr47Ed - chr2R_8_11260001 chr2R_11260001 RAL-707 554 chr2R 11336587 11336614 chr2R 11336670 11336697 8 83 1.0 4.0 2.5 2.3 110 chr2R 11336587 intergenic sha +,lambdaTry + chr2R 11336642 intergenic sha +,lambdaTry + chr2R 11336697 intergenic lambdaTry +,sha + chr2R_8_11335001 chr2R_11335001 RAL-707 555 chr2R 11344146 11344159 chr2R 11344242 11344255 5 96 0.0 1.0 0.5 3.3 109 chr2R 11344146 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-707 556 chr2R 11415527 11415546 chr2R 11418675 11418695 opus 8 3149 1.5 4.0 2.8 2.1 3168 chr2R 11415527 intron Drip - chr2R 11417111 intron Drip - chr2R 11418695 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-707 557 chr2R 11419869 11419894 chr2R 11419999 11420024 8 130 2.0 4.0 3.0 2.0 155 chr2R 11419869 intron Drip - chr2R 11419946 intron Drip - chr2R 11420024 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-707 558 chr2R 11472647 11472674 chr2R 11473844 11473871 pogo 10 1197 3.0 3.0 3.0 2.5 1224 chr2R 11472647 intergenic not near genes chr2R 11473259 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-707 559 chr2R 11494603 11494627 chr2R 11494688 11494716 8 88 2.5 3.5 3.0 2.0 113 chr2R 11494603 intron inv + chr2R 11494660 intron inv + chr2R 11494716 intron inv + chr2R_8_11490001 chr2R_11490001 RAL-707 560 chr2R 11516800 11516821 chr2R 11516883 11516904 4 83 2.5 2.5 2.5 1.1 104 chr2R 11516800 intergenic not near genes chr2R 11516852 intergenic not near genes chr2R 11516904 intergenic not near genes chr2R_4_11515001 chr2R_11515001 RAL-707 561 chr2R 11636409 11636426 chr2R 11636486 11636504 8 78 3.5 3.0 3.2 1.9 95 chr2R 11636409 intron CG9005 - chr2R 11636456 intron CG9005 - chr2R 11636504 intron CG9005 - chr2R_8_11635001 chr2R_11635001 RAL-707 562 chr2R 11677872 11677894 chr2R 11677950 11677972 8 78 1.0 1.5 1.2 3.6 100 chr2R 11677872 intron,exon Roc2 -,Tret1-2 + chr2R 11677922 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677972 intron,3` UTR Roc2 -,Tret1-2 + chr2R_8_11675001 chr2R_11675001 RAL-707 563 chr2R 11724174 11724190 chr2R 11724256 11724273 4 83 0.0 4.0 2.0 1.3 99 chr2R 11724174 intron pyr + chr2R 11724224 intron pyr + chr2R 11724273 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-707 564 chr2R 11777914 11777943 chr2R 11777995 11778024 9 81 5.5 2.5 4.0 1.8 110 chr2R 11777914 intron ths + chr2R 11777969 intron ths + chr2R 11778024 intron ths + chr2R_9_11775001 chr2R_11775001 RAL-707 565 chr2R 11924525 11924546 chr2R 11924600 11924622 4 76 1.5 3.0 2.2 1.2 97 chr2R 11924525 intergenic not near genes chr2R 11924574 intergenic not near genes chr2R 11924622 intergenic not near genes chr2R_4_11920001 chr2R_11920001 RAL-707 566 chr2R 11977527 11977560 chr2R 11977638 11977671 9 99 11.5 11.5 11.5 0.7 144 chr2R 11977527 3` UTR CG8290 + chr2R 11977599 3` UTR,3` UTR CG8290 +,CG30036 - chr2R 11977671 3` UTR,3` UTR CG8290 +,CG30036 - chr2R_9_11975001 chr2R_11975001 RAL-707 567 chr2R 11999433 11999462 chr2R 11999512 11999541 8 78 1.0 3.0 2.0 2.7 108 chr2R 11999433 intergenic not near genes chr2R 11999487 intergenic not near genes chr2R 11999541 intergenic not near genes chr2R_8_11995001 chr2R_11995001 RAL-707 568 chr2R 8518794 8518798 chr2R 12066188 12066192 4 3547394 6.5 14.5 10.5 0.3 3547398 chr2R 8518794 intron mtt - chr2R 10292493 intron CAP + chr2R 12066192 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-707 569 chr2R 12124830 12124862 chr2R 12124914 12124946 8 83 1.5 4.0 2.8 2.1 116 chr2R 12124830 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124946 intergenic not near genes chr2R_8_12120001 chr2R_12120001 RAL-707 570 chr2R 12178923 12178938 chr2R 12179003 12179018 4 80 0.5 0.5 0.5 2.7 95 chr2R 12178923 intergenic CR45264 +,EndoG - chr2R 12178970 intergenic CR45264 +,EndoG - chr2R 12179018 5` UTR CR45264 + chr2R_4_12175001 chr2R_12175001 RAL-707 571 chr2R 12186000 12186035 chr2R 12186095 12186130 16 95 1.5 3.5 2.5 4.6 130 chr2R 12186000 intron Cyp6g1 + chr2R 12186065 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_16_12185001 chr2R_12185001 RAL-707 572 chr2R 12187471 12187508 chr2R 12190087 12190124 58 2617 147.0 80.5 113.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_58_12185001 chr2R_12185001 RAL-707 573 chr2R 12240764 12240778 chr2R 12240840 12240854 5 76 3.0 0.0 1.5 2.0 90 chr2R 12240764 3` UTR CG13170 + chr2R 12240809 3` UTR CG13170 + chr2R 12240854 intergenic CG13170 +,CG43315 + chr2R_5_12240001 chr2R_12240001 RAL-707 574 chr2R 12363379 12363416 chr2R 12363811 12363847 20 432 3.0 3.0 3.0 5.0 468 chr2R 12363379 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_20_12360001 chr2R_12360001 RAL-707 575 chr2R 12417460 12417479 chr2R 12417540 12417559 9 79 2.0 4.0 3.0 2.2 99 chr2R 12417460 exon CG13157 + chr2R 12417510 exon CG13157 + chr2R 12417559 exon CG13157 + chr2R_9_12415001 chr2R_12415001 RAL-707 576 chr2R 12481141 12481168 chr2R 12482945 12482971 roo 7 1803 3.5 5.5 4.5 1.3 1830 chr2R 12481141 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482971 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-707 577 chr2R 12492101 12492124 chr2R 12492187 12492218 11 93 3.5 0.0 1.8 3.9 117 chr2R 12492101 intron fdl - chr2R 12492160 intron fdl - chr2R 12492218 intron fdl - chr2R_11_12490001 chr2R_12490001 RAL-707 578 chr2R 12501704 12501719 chr2R 12503866 12503881 Rt1c 4 2161 1.5 11.5 6.5 0.5 2177 chr2R 12501704 intron fdl - chr2R 12502792 intron fdl - chr2R 12503881 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-707 579 chr2R 12504151 12504179 chr2R 12504228 12504254 8 77 3.0 3.0 3.0 2.0 103 chr2R 12504151 intron fdl - chr2R 12504202 intron fdl - chr2R 12504254 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-707 580 chr2R 12527276 12527301 chr2R 12527485 12527509 8 209 0.5 2.5 1.5 3.2 233 chr2R 12527276 intergenic not near genes chr2R 12527392 intergenic not near genes chr2R 12527509 intergenic not near genes chr2R_8_12525001 chr2R_12525001 RAL-707 581 chr2R 12540474 12540494 chr2R 12540557 12540577 6 82 4.0 5.5 4.8 1.0 103 chr2R 12540474 intron fra + chr2R 12540526 intron fra + chr2R 12540577 intron fra + chr2R_6_12540001 chr2R_12540001 RAL-707 582 chr2R 12548544 12548548 chr2R 12548621 12548625 4 77 0.0 6.0 3.0 1.0 81 chr2R 12548544 intron fra + chr2R 12548584 intron fra + chr2R 12548625 intron fra + chr2R_4_12545001 chr2R_12545001 RAL-707 583 chr2R 12565564 12565597 chr2R 12565934 12565967 6 370 1.0 3.5 2.2 1.9 403 chr2R 12565564 intergenic not near genes chr2R 12565766 intergenic Cyp301a1 + chr2R 12565967 intergenic Cyp301a1 + chr2R_6_12565001 chr2R_12565001 RAL-707 584 chr2R 12652855 12652886 chr2R 12656144 12656176 9 3289 23.0 24.5 23.8 0.4 3321 chr2R 12652855 5` UTR ZnT49B + chr2R 12654516 exon ZnT49B + chr2R 12656176 intron CG8646 + chr2R_9_12650001 chr2R_12650001 RAL-707 585 chr2R 12664791 12664818 chr2R 12664869 12664896 7 78 1.5 3.5 2.5 2.0 105 chr2R 12664791 intron nemy - chr2R 12664844 intron nemy - chr2R 12664896 intron nemy - chr2R_7_12660001 chr2R_12660001 RAL-707 586 chr2R 12707529 12707541 chr2R 12715895 12715907 roo 6 8366 0.0 2.5 1.2 2.7 8378 chr2R 12707529 intron CG42663 + chr2R 12711718 intron CG42663 + chr2R 12715907 intron CG42663 + chr2R_6_12710001 chr2R_12710001 RAL-707 587 chr2R 12739140 12739155 chr2R 12739215 12739230 7 75 3.0 4.0 3.5 1.6 90 chr2R 12739140 intron CG42663 + chr2R 12739185 intron CG42663 + chr2R 12739230 intron CG42663 + chr2R_7_12735001 chr2R_12735001 RAL-707 588 chr2R 12771328 12771356 chr2R 12771437 12771465 16 109 3.0 4.0 3.5 3.6 137 chr2R 12771328 intergenic not near genes chr2R 12771396 intergenic not near genes chr2R 12771465 intergenic not near genes chr2R_16_12770001 chr2R_12770001 RAL-707 589 chr2R 12789295 12789327 chr2R 12797658 12797690 roo 12 8362 1.5 5.5 3.5 2.7 8395 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_12_12790001 chr2R_12790001 RAL-707 590 chr2R 12819467 12819476 chr2R 12824536 12824545 jockey 5 5069 1.0 4.5 2.8 1.3 5078 chr2R 12819467 intergenic not near genes chr2R 12822006 intergenic not near genes chr2R 12824545 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-707 591 chr2R 12840826 12840841 chr2R 12841163 12841180 8 338 0.5 5.5 3.0 2.0 354 chr2R 12840826 3` UTR Cyp9h1 - chr2R 12841003 exon Cyp9h1 - chr2R 12841180 exon Cyp9h1 - chr2R_8_12840001 chr2R_12840001 RAL-707 592 chr2R 12908483 12908492 chr2R 12908562 12908571 5 79 3.0 5.5 4.2 1.0 88 chr2R 12908483 intergenic not near genes chr2R 12908527 intergenic not near genes chr2R 12908571 intergenic not near genes chr2R_5_12905001 chr2R_12905001 RAL-707 593 chr2R 12951668 12951694 chr2R 12951749 12951774 5 81 1.5 2.5 2.0 1.7 106 chr2R 12951668 intron,intron CG44251 -,CG44250 - chr2R 12951721 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_5_12950001 chr2R_12950001 RAL-707 594 chr2R 13089753 13089777 chr2R 13089862 13089887 8 109 2.5 1.0 1.8 2.9 134 chr2R 13089753 intergenic not near genes chr2R 13089820 intergenic not near genes chr2R 13089887 intergenic not near genes chr2R_8_13085001 chr2R_13085001 RAL-707 595 chr2R 13136845 13136869 chr2R 13141638 13141666 Doc 6 4797 4.0 7.0 5.5 0.9 4821 chr2R 13136845 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-707 596 chr2R 13167426 13167451 chr2R 13167520 13167545 10 94 3.5 0.0 1.8 3.6 119 chr2R 13167426 intron GLaz - chr2R 13167486 intron GLaz - chr2R 13167545 intron GLaz - chr2R_10_13165001 chr2R_13165001 RAL-707 597 chr2R 13218304 13218395 chr2R 13218387 13218472 6 82 0.0 0.0 0.0 6.0 168 chr2R 13218304 intron CG4630 - chr2R 13218388 intron CG4630 - chr2R 13218472 intron CG4630 - chr2R_6_13215001 chr2R_13215001 RAL-707 598 chr2R 13249575 13249593 chr2R 13249663 13249682 4 89 1.0 2.5 1.8 1.4 107 chr2R 13249575 intron CG4712 - chr2R 13249628 intron CG4712 - chr2R 13249682 intron CG4712 - chr2R_4_13245001 chr2R_13245001 RAL-707 599 chr2R 13432938 13432965 chr2R 13433014 13433041 5 76 3.0 4.0 3.5 1.1 103 chr2R 13432938 intron CG42321 - chr2R 13432990 intron CG42321 - chr2R 13433041 intron,5` UTR CG42321 -,CG30065 + chr2R_5_13430001 chr2R_13430001 RAL-707 600 chr2R 13439110 13439121 chr2R 13439225 13439236 5 115 5.5 3.0 4.2 1.0 126 chr2R 13439110 intergenic CG42321 -,cnn - chr2R 13439173 intergenic CG42321 -,cnn - chr2R 13439236 intergenic cnn -,CG42321 - chr2R_5_13435001 chr2R_13435001 RAL-707 601 chr2R 13497255 13497290 chr2R 13497347 13497382 14 92 3.5 1.5 2.5 4.0 127 chr2R 13497255 intron drk - chr2R 13497318 intron drk - chr2R 13497382 exon drk - chr2R_14_13495001 chr2R_13495001 RAL-707 602 chr2R 13547083 13547101 chr2R 13547278 13547296 10 195 2.0 1.5 1.8 3.6 213 chr2R 13547083 intron CG6145 - chr2R 13547190 intron CG6145 - chr2R 13547296 intron CG6145 - chr2R_10_13545001 chr2R_13545001 RAL-707 603 chr2R 13566258 13566287 chr2R 13566338 13566367 6 80 5.0 0.0 2.5 1.7 109 chr2R 13566258 intergenic not near genes chr2R 13566312 intergenic not near genes chr2R 13566367 intergenic not near genes chr2R_6_13565001 chr2R_13565001 RAL-707 604 chr2R 13580496 13580517 chr2R 13580846 13580867 jockey 9 350 0.5 2.5 1.5 3.6 371 chr2R 13580496 3` UTR CG6191 - chr2R 13580682 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580867 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-707 605 chr2R 13608275 13608300 chr2R 13608358 13608384 10 84 3.0 0.5 1.8 3.6 109 chr2R 13608275 intergenic CG12464 - chr2R 13608330 intergenic CG12464 - chr2R 13608384 intergenic CG12464 - chr2R_10_13605001 chr2R_13605001 RAL-707 606 chr2R 13652709 13652725 chr2R 13652787 13652802 5 78 1.5 1.0 1.2 2.3 93 chr2R 13652709 intron fas + chr2R 13652756 intron fas + chr2R 13652802 intron fas + chr2R_5_13650001 chr2R_13650001 RAL-707 607 chr2R 13692322 13692351 chr2R 13692406 13692434 8 84 1.5 4.0 2.8 2.1 112 chr2R 13692322 intron,intron fas +,CG6220 - chr2R 13692378 intron,intron fas +,CG6220 - chr2R 13692434 intron,intron fas +,CG6220 - chr2R_8_13690001 chr2R_13690001 RAL-707 608 chr2R 13694627 13694658 chr2R 13694704 13694735 4 77 1.0 1.0 1.0 2.0 108 chr2R 13694627 intron fas + chr2R 13694681 intron fas + chr2R 13694735 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-707 609 chr2R 13721204 13721225 chr2R 13721287 13721308 7 83 2.5 2.5 2.5 2.0 104 chr2R 13721204 intron fas + chr2R 13721256 intron fas + chr2R 13721308 intron fas + chr2R_7_13720001 chr2R_13720001 RAL-707 610 chr2R 13768995 13769008 chr2R 13769094 13769107 7 99 0.5 5.0 2.8 1.8 112 chr2R 13768995 intergenic not near genes chr2R 13769051 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-707 611 chr2R 13905613 13905634 chr2R 13907595 13907616 Rt1a 7 1982 2.5 6.0 4.2 1.3 2003 chr2R 13905613 intron shot - chr2R 13906614 intron shot - chr2R 13907616 intron shot - chr2R_7_13905001 chr2R_13905001 RAL-707 612 chr2R 13925870 13925881 chr2R 13926022 13926035 5 154 3.0 1.0 2.0 1.7 165 chr2R 13925870 intron shot - chr2R 13925952 intron shot - chr2R 13926035 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-707 613 chr2R 14000363 14000390 chr2R 14000573 14000600 8 210 2.5 4.0 3.2 1.9 237 chr2R 14000363 intron mam + chr2R 14000482 intron mam + chr2R 14000600 intron mam + chr2R_8_14000001 chr2R_14000001 RAL-707 614 chr2R 14018155 14018194 chr2R 14018239 14018278 7 84 1.5 1.5 1.5 2.8 123 chr2R 14018155 intron mam + chr2R 14018216 intron mam + chr2R 14018278 intron mam + chr2R_7_14015001 chr2R_14015001 RAL-707 615 chr2R 14081358 14081368 chr2R 14081456 14081466 4 98 5.0 5.0 5.0 0.7 108 chr2R 14081358 intron Prosap - chr2R 14081412 intron Prosap - chr2R 14081466 intron Prosap - chr2R_4_14080001 chr2R_14080001 RAL-707 616 chr2R 14142334 14142472 chr2R 14142422 14142562 13 89 0.0 0.0 0.0 13.0 228 chr2R 14142334 intergenic not near genes chr2R 14142448 intergenic not near genes chr2R 14142562 intergenic not near genes chr2R_13_14140001 chr2R_14140001 RAL-707 617 chr2R 14334528 14334548 chr2R 14334607 14334627 6 79 1.5 0.5 1.0 3.0 99 chr2R 14334528 intron Shroom + chr2R 14334578 intron Shroom + chr2R 14334627 intron Shroom + chr2R_6_14330001 chr2R_14330001 RAL-707 618 chr2R 14357557 14357572 chr2R 14357647 14357662 5 90 1.0 0.5 0.8 2.8 105 chr2R 14357557 intergenic CG8617 -,Arc1 - chr2R 14357610 intergenic Arc1 -,CG8617 - chr2R 14357662 intergenic Arc1 -,CG8617 - chr2R_5_14355001 chr2R_14355001 RAL-707 619 chr2R 14393864 14393895 chr2R 14393949 14393980 10 85 1.5 3.0 2.2 3.1 116 chr2R 14393864 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-707 620 chr2R 14467310 14467327 chr2R 14476468 14476485 roo 12 9158 3.0 5.5 4.2 2.3 9175 chr2R 14467310 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-707 621 chr2R 14497395 14497419 chr2R 14498561 14498585 1360 5 1166 2.0 6.0 4.0 1.0 1190 chr2R 14497395 3` UTR Cpsf160 - chr2R 14497990 intron Cpsf160 - chr2R 14498585 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-707 622 chr2R 14524855 14524873 chr2R 14524950 14524965 5 96 3.5 0.0 1.8 1.8 110 chr2R 14524855 intergenic not near genes chr2R 14524910 intergenic not near genes chr2R 14524965 intergenic not near genes chr2R_5_14520001 chr2R_14520001 RAL-707 623 chr2R 14530774 14530789 chr2R 14530853 14530868 4 79 3.5 2.5 3.0 1.0 94 chr2R 14530774 intron ttv + chr2R 14530821 intron ttv + chr2R 14530868 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-707 624 chr2R 14565573 14565587 chr2R 14565650 14565664 6 77 3.0 6.0 4.5 1.1 91 chr2R 14565573 intron ttv + chr2R 14565618 intron ttv + chr2R 14565664 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-707 625 chr2R 14583949 14583967 chr2R 14587873 14587891 4 3924 18.0 4.0 11.0 0.3 3942 chr2R 14583949 exon ttv + chr2R 14585920 3` UTR ttv + chr2R 14587891 3` UTR ttv + chr2R_4_14585001 chr2R_14585001 RAL-707 626 chr2R 14610249 14610273 chr2R 14610341 14610365 9 91 3.5 4.5 4.0 1.8 116 chr2R 14610249 exon Su(var)2-HP2 - chr2R 14610307 exon Su(var)2-HP2 - chr2R 14610365 exon Su(var)2-HP2 - chr2R_9_14610001 chr2R_14610001 RAL-707 627 chr2R 14729959 14729982 chr2R 14730043 14730066 9 84 2.5 2.0 2.2 2.8 107 chr2R 14729959 intergenic not near genes chr2R 14730012 intergenic not near genes chr2R 14730066 intergenic not near genes chr2R_9_14730001 chr2R_14730001 RAL-707 628 chr2R 14855032 14855061 chr2R 14855124 14855153 7 92 4.5 4.0 4.2 1.3 121 chr2R 14855032 5` UTR Ciao1 - chr2R 14855092 intergenic Ciao1 -,HPS1 + chr2R 14855153 intergenic Ciao1 -,HPS1 + chr2R_7_14855001 chr2R_14855001 RAL-707 629 chr2R 14889208 14889237 chr2R 14897816 14897842 Max-element 8 8607 2.5 0.0 1.2 3.6 8634 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893525 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_8_14890001 chr2R_14890001 RAL-707 630 chr2R 14911701 14911728 chr2R 14911824 14911851 5 123 1.0 3.0 2.0 1.7 150 chr2R 14911701 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-707 631 chr2R 15004724 15004760 chr2R 15005053 15005089 jockey 13 329 1.5 0.5 1.0 6.5 365 chr2R 15004724 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_13_15000001 chr2R_15000001 RAL-707 632 chr2R 15015454 15015489 chr2R 15022878 15022913 mdg1 9 7424 3.0 0.0 1.5 3.6 7459 chr2R 15015454 intron hbs + chr2R 15019184 intron hbs + chr2R 15022913 intron hbs + chr2R_9_15015001 chr2R_15015001 RAL-707 633 chr2R 15084980 15085005 chr2R 15092028 15092054 297 4 7049 0.5 4.5 2.5 1.1 7074 chr2R 15084980 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092054 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-707 634 chr2R 15100917 15100945 chr2R 15100998 15101026 7 81 2.0 3.5 2.8 1.8 109 chr2R 15100917 intergenic not near genes chr2R 15100972 intergenic not near genes chr2R 15101026 intergenic not near genes chr2R_7_15100001 chr2R_15100001 RAL-707 635 chr2R 15119316 15119348 chr2R 15127797 15127829 Tirant 12 8480 3.0 3.0 3.0 3.0 8513 chr2R 15119316 intron chn + chr2R 15123572 intron chn + chr2R 15127829 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-707 636 chr2R 15133479 15133509 chr2R 15133558 15133588 7 79 3.5 1.5 2.5 2.0 109 chr2R 15133479 intron chn + chr2R 15133534 intron chn + chr2R 15133588 intron chn + chr2R_7_15130001 chr2R_15130001 RAL-707 637 chr2R 15137969 15137999 chr2R 15138047 15138077 4 80 1.5 0.0 0.8 2.2 108 chr2R 15137969 intron chn + chr2R 15138023 intron chn + chr2R 15138077 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-707 638 chr2R 15230386 15230392 chr2R 15231097 15231103 5 711 20.0 1.5 10.8 0.4 717 chr2R 15230386 intron,5` UTR Fs -,CR44370 + chr2R 15230744 intron,5` UTR Fs -,CR44370 + chr2R 15231103 intron,5` UTR Fs -,CR44370 + chr2R_5_15230001 chr2R_15230001 RAL-707 639 chr2R 15833528 15833555 chr2R 15833614 15833642 10 86 2.5 2.5 2.5 2.9 114 chr2R 15833528 intron,intron tun +,Poxn - chr2R 15833585 intron,intron tun +,Poxn - chr2R 15833642 intron,intron tun +,Poxn - chr2R_10_15830001 chr2R_15830001 RAL-707 640 chr2R 15877966 15877998 chr2R 15878051 15878083 9 85 2.5 2.0 2.2 2.8 117 chr2R 15877966 intron sli - chr2R 15878024 intron sli - chr2R 15878083 intron sli - chr2R_9_15875001 chr2R_15875001 RAL-707 641 chr2R 15910809 15910838 chr2R 15910885 15910915 11 77 0.5 1.5 1.0 5.5 106 chr2R 15910809 intron sli - chr2R 15910862 intron sli - chr2R 15910915 intron sli - chr2R_11_15910001 chr2R_15910001 RAL-707 642 chr2R 16055262 16055287 chr2R 16055344 16055368 9 82 2.5 2.0 2.2 2.8 106 chr2R 16055262 intron CG8405 + chr2R 16055315 intron CG8405 + chr2R 16055368 intron CG8405 + chr2R_9_16055001 chr2R_16055001 RAL-707 643 chr2R 16119886 16119918 chr2R 16120010 16120042 12 124 3.0 3.0 3.0 3.0 156 chr2R 16119886 5` UTR Jhe + chr2R 16119964 intron Jhe + chr2R 16120042 intron Jhe + chr2R_12_16115001 chr2R_16115001 RAL-707 644 chr2R 16214884 16214911 chr2R 16214969 16214996 8 85 2.0 4.0 3.0 2.0 112 chr2R 16214884 intron mrj - chr2R 16214940 intron mrj - chr2R 16214996 intron mrj - chr2R_8_16210001 chr2R_16210001 RAL-707 645 chr2R 16245631 16245657 chr2R 16245718 16245745 9 88 4.0 3.0 3.5 2.0 114 chr2R 16245631 intron CngA - chr2R 16245688 intron CngA - chr2R 16245745 intron CngA - chr2R_9_16245001 chr2R_16245001 RAL-707 646 chr2R 16307891 16307903 chr2R 16307968 16307980 4 77 4.5 2.0 3.2 1.0 89 chr2R 16307891 5` UTR Nox + chr2R 16307936 5` UTR Nox + chr2R 16307980 5` UTR Nox + chr2R_4_16305001 chr2R_16305001 RAL-707 647 chr2R 16352013 16352033 chr2R 16352161 16352181 5 148 3.0 5.5 4.2 1.0 168 chr2R 16352013 intergenic not near genes chr2R 16352097 intergenic not near genes chr2R 16352181 intergenic not near genes chr2R_5_16350001 chr2R_16350001 RAL-707 648 chr2R 16380123 16380147 chr2R 16380221 16380245 7 98 0.5 2.0 1.2 3.2 122 chr2R 16380123 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380184 3` UTR CR45317 - chr2R 16380245 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_7_16380001 chr2R_16380001 RAL-707 649 chr2R 16496332 16496339 chr2R 16496413 16496420 5 81 4.5 0.0 2.2 1.6 88 chr2R 16496332 intergenic not near genes chr2R 16496376 intergenic not near genes chr2R 16496420 intergenic CG7813 - chr2R_5_16495001 chr2R_16495001 RAL-707 650 chr2R 16544855 16544869 chr2R 16544940 16544954 4 85 0.0 0.0 0.0 4.0 99 chr2R 16544855 intergenic not near genes chr2R 16544904 intergenic not near genes chr2R 16544954 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-707 651 chr2R 16571877 16571903 chr2R 16571972 16571998 8 95 1.5 1.5 1.5 3.2 121 chr2R 16571877 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571998 intergenic CG4927 + chr2R_8_16570001 chr2R_16570001 RAL-707 652 chr2R 16614133 16614158 chr2R 16614352 16614377 7 219 3.0 3.5 3.2 1.7 244 chr2R 16614133 intron CG5065 + chr2R 16614255 intron CG5065 + chr2R 16614377 intron CG5065 + chr2R_7_16610001 chr2R_16610001 RAL-707 653 chr2R 16618723 16618745 chr2R 16618799 16618821 7 76 0.0 5.5 2.8 1.8 98 chr2R 16618723 intron CG5065 + chr2R 16618772 intron CG5065 + chr2R 16618821 5` UTR CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-707 654 chr2R 16732628 16732651 chr2R 16732715 16732738 7 87 2.0 2.5 2.2 2.2 110 chr2R 16732628 5` UTR CG30463 - chr2R 16732683 5` UTR CG30463 - chr2R 16732738 5` UTR CG30463 - chr2R_7_16730001 chr2R_16730001 RAL-707 655 chr2R 16772601 16772624 chr2R 16773767 16773790 6 1165 20.5 28.0 24.2 0.2 1189 chr2R 16772601 5` UTR unc-104 - chr2R 16773196 exon Sod2 - chr2R 16773790 5` UTR Sod2 - chr2R_6_16770001 chr2R_16770001 RAL-707 656 chr2R 16910233 16910247 chr2R 16910332 16910345 4 98 1.5 5.5 3.5 0.9 112 chr2R 16910233 intergenic not near genes chr2R 16910289 intergenic not near genes chr2R 16910345 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-707 657 chr2R 17079053 17079088 chr2R 17079135 17079169 5 81 0.5 0.5 0.5 3.3 116 chr2R 17079053 intron CG30460 - chr2R 17079111 intron CG30460 - chr2R 17079169 intron CG30460 - chr2R_5_17075001 chr2R_17075001 RAL-707 658 chr2R 17087490 17087496 chr2R 17087568 17087574 4 78 3.5 3.0 3.2 1.0 84 chr2R 17087490 5` UTR CG30460 - chr2R 17087532 5` UTR CG30460 - chr2R 17087574 5` UTR CG30460 - chr2R_4_17085001 chr2R_17085001 RAL-707 659 chr2R 17098652 17098663 chr2R 17098741 17098752 4 89 5.0 2.5 3.8 0.8 100 chr2R 17098652 intergenic GstS1 - chr2R 17098702 intergenic GstS1 - chr2R 17098752 intergenic GstS1 - chr2R_4_17095001 chr2R_17095001 RAL-707 660 chr2R 17120284 17120297 chr2R 17120382 17120395 10 98 4.0 2.5 3.2 2.4 111 chr2R 17120284 5` UTR Amy-p - chr2R 17120340 intergenic Amy-p - chr2R 17120395 intergenic Amy-p - chr2R_10_17120001 chr2R_17120001 RAL-707 661 chr2R 17147248 17147270 chr2R 17152279 17152301 jockey 5 5031 4.5 6.0 5.2 0.8 5053 chr2R 17147248 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-707 662 chr2R 17176353 17176385 chr2R 17182543 17182575 diver 6 6190 3.0 1.5 2.2 1.9 6222 chr2R 17176353 intergenic not near genes chr2R 17179464 intergenic not near genes chr2R 17182575 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-707 663 chr2R 17236507 17236541 chr2R 17241711 17241745 copia 10 5204 1.5 1.5 1.5 4.0 5238 chr2R 17236507 intron mbl + chr2R 17239126 intron mbl + chr2R 17241745 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-707 664 chr2R 17331615 17331648 chr2R 17331722 17331755 4 107 1.0 2.0 1.5 1.6 140 chr2R 17331615 intron mbl + chr2R 17331685 intron mbl + chr2R 17331755 intron mbl + chr2R_4_17330001 chr2R_17330001 RAL-707 665 chr2R 17395286 17395316 chr2R 17395363 17395394 7 78 2.0 3.5 2.8 1.8 108 chr2R 17395286 intron Sip1 + chr2R 17395340 intron Sip1 + chr2R 17395394 intron Sip1 + chr2R_7_17395001 chr2R_17395001 RAL-707 666 chr2R 17459013 17459034 chr2R 17459098 17459119 7 85 3.0 5.0 4.0 1.4 106 chr2R 17459013 intron CG14478 + chr2R 17459066 intron CG14478 + chr2R 17459119 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-707 667 chr2R 17485916 17485932 chr2R 17490686 17490702 F-element 6 4770 1.5 1.0 1.2 2.7 4786 chr2R 17485916 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488309 intron NT5E-2 + chr2R 17490702 intron NT5E-2 + chr2R_6_17485001 chr2R_17485001 RAL-707 668 chr2R 17500678 17500694 chr2R 17500754 17500769 4 76 0.0 3.0 1.5 1.6 91 chr2R 17500678 intergenic not near genes chr2R 17500724 intergenic not near genes chr2R 17500769 intergenic not near genes chr2R_4_17500001 chr2R_17500001 RAL-707 669 chr2R 17637845 17637853 chr2R 17637925 17637933 4 80 0.0 2.0 1.0 2.0 88 chr2R 17637845 intron CG10936 - chr2R 17637889 intron CG10936 - chr2R 17637933 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-707 670 chr2R 17708403 17708410 chr2R 17708484 17708491 4 81 1.5 1.5 1.5 1.6 88 chr2R 17708403 intron CG6424 - chr2R 17708447 intron CG6424 - chr2R 17708491 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-707 671 chr2R 17709983 17710094 chr2R 17710074 17710172 7 85 0.0 0.0 0.0 7.0 189 chr2R 17709983 intron CG6424 - chr2R 17710078 intron CG6424 - chr2R 17710172 intron CG6424 - chr2R_7_17710001 chr2R_17710001 RAL-707 672 chr2R 17784029 17784049 chr2R 17784268 17784288 pogo 5 239 0.0 2.0 1.0 2.5 259 chr2R 17784029 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784288 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-707 673 chr2R 17835032 17835049 chr2R 17835126 17835143 5 94 4.5 0.5 2.5 1.4 111 chr2R 17835032 intron grh + chr2R 17835088 intron grh + chr2R 17835143 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-707 674 chr2R 17846786 17846812 chr2R 17846870 17846896 11 84 3.0 4.5 3.8 2.3 110 chr2R 17846786 intron,5` UTR olf186-F +,olf186-M + chr2R 17846841 intron,5` UTR olf186-F +,olf186-M + chr2R 17846896 intron,5` UTR olf186-F +,olf186-M + chr2R_11_17845001 chr2R_17845001 RAL-707 675 chr2R 17872098 17872128 chr2R 17872182 17872214 11 87 2.0 2.0 2.0 3.7 116 chr2R 17872098 intergenic Mapmodulin - chr2R 17872156 intergenic Mapmodulin - chr2R 17872214 intergenic Mapmodulin - chr2R_11_17870001 chr2R_17870001 RAL-707 676 chr2R 17920079 17920098 chr2R 17920318 17920338 4 240 5.0 3.5 4.2 0.8 259 chr2R 17920079 intron Elk + chr2R 17920208 intron Elk + chr2R 17920338 intron Elk + chr2R_4_17920001 chr2R_17920001 RAL-707 677 chr2R 17922681 17922711 chr2R 17922806 17922838 8 127 2.0 2.5 2.2 2.5 157 chr2R 17922681 intron Elk + chr2R 17922760 intron Elk + chr2R 17922838 intron Elk + chr2R_8_17920001 chr2R_17920001 RAL-707 678 chr2R 17968606 17968624 chr2R 17968710 17968728 6 104 4.5 5.0 4.8 1.0 122 chr2R 17968606 intergenic not near genes chr2R 17968667 intergenic not near genes chr2R 17968728 intergenic not near genes chr2R_6_17965001 chr2R_17965001 RAL-707 679 chr2R 18021487 18021548 chr2R 18021974 18022035 6 477 5.0 3.0 4.0 1.2 548 chr2R 18021487 exon CG10910 + chr2R 18021761 exon CG10910 + chr2R 18022035 exon CG10910 + chr2R_6_18020001 chr2R_18020001 RAL-707 680 chr2R 18076038 18076048 chr2R 18076142 18076152 4 104 4.0 1.0 2.5 1.1 114 chr2R 18076038 intron CG34386 + chr2R 18076095 intron CG34386 + chr2R 18076152 intron CG34386 + chr2R_4_18075001 chr2R_18075001 RAL-707 681 chr2R 18076049 18076063 chr2R 18076140 18076167 4 101 3.0 1.0 2.0 1.3 118 chr2R 18076049 intron CG34386 + chr2R 18076108 intron CG34386 + chr2R 18076167 intron CG34386 + chr2R_4_18075001 chr2R_18075001 RAL-707 682 chr2R 18111690 18111708 chr2R 18115557 18115576 F-element 5 3868 2.0 1.5 1.8 1.8 3886 chr2R 18111690 intergenic not near genes chr2R 18113633 intergenic not near genes chr2R 18115576 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-707 683 chr2R 18124343 18124364 chr2R 18124419 18124441 7 77 3.5 4.0 3.8 1.5 98 chr2R 18124343 intron stau - chr2R 18124392 intron stau - chr2R 18124441 intron stau - chr2R_7_18120001 chr2R_18120001 RAL-707 684 chr2R 18171495 18171522 chr2R 18171634 18171661 8 139 4.5 1.5 3.0 2.0 166 chr2R 18171495 intron Dgp-1 - chr2R 18171578 intron Dgp-1 - chr2R 18171661 intron Dgp-1 - chr2R_8_18170001 chr2R_18170001 RAL-707 685 chr2R 18187669 18187677 chr2R 18187883 18187891 7 214 3.0 2.0 2.5 2.0 222 chr2R 18187669 intron CG33958 - chr2R 18187780 intron,exon CG33958 -,CG14499 + chr2R 18187891 intron,exon CG33958 -,CG14499 + chr2R_7_18185001 chr2R_18185001 RAL-707 686 chr2R 18188667 18188690 chr2R 18188754 18188777 5 87 1.5 5.5 3.5 1.1 110 chr2R 18188667 intron CG33958 - chr2R 18188722 intron CG33958 - chr2R 18188777 intron CG33958 - chr2R_5_18185001 chr2R_18185001 RAL-707 687 chr2R 18308299 18308314 chr2R 18308405 18308420 6 106 1.5 2.0 1.8 2.1 121 chr2R 18308299 intron sbb - chr2R 18308360 intron sbb - chr2R 18308420 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-707 688 chr2R 18358391 18358421 chr2R 18372603 18372633 roo 7 14212 3.5 0.0 1.8 2.5 14242 chr2R 18358391 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-707 689 chr2R 18408285 18408313 chr2R 18408405 18408434 6 120 3.0 2.5 2.8 1.6 149 chr2R 18408285 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408434 exon GstE8 + chr2R_6_18405001 chr2R_18405001 RAL-707 690 chr2R 18435736 18435765 chr2R 18435821 18435850 10 84 4.0 3.5 3.8 2.1 114 chr2R 18435736 intron CG30118 - chr2R 18435793 intron CG30118 - chr2R 18435850 intron CG30118 - chr2R_10_18435001 chr2R_18435001 RAL-707 691 chr2R 18477743 18477758 chr2R 18477826 18477841 6 83 0.5 4.0 2.2 1.9 98 chr2R 18477743 intron CG30116 - chr2R 18477792 intron CG30116 - chr2R 18477841 intron CG30116 - chr2R_6_18475001 chr2R_18475001 RAL-707 692 chr2R 18590865 18590898 chr2R 18600017 18600050 roo 10 9152 2.5 1.5 2.0 3.3 9185 chr2R 18590865 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-707 693 chr2R 18657434 18657467 chr2R 18657631 18657664 18 197 6.0 3.5 4.8 3.1 230 chr2R 18657434 intron SP2637 - chr2R 18657549 intron SP2637 - chr2R 18657664 intron SP2637 - chr2R_18_18655001 chr2R_18655001 RAL-707 694 chr2R 18692902 18692919 chr2R 18692989 18693006 7 87 2.5 1.0 1.8 2.5 104 chr2R 18692902 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_7_18690001 chr2R_18690001 RAL-707 695 chr2R 18785927 18785939 chr2R 18785995 18786018 7 77 1.5 5.0 3.2 1.7 91 chr2R 18785927 intron CG15080 + chr2R 18785972 intron CG15080 + chr2R 18786018 intron CG15080 + chr2R_7_18785001 chr2R_18785001 RAL-707 696 chr2R 18808065 18808079 chr2R 18808154 18808168 4 89 0.0 0.0 0.0 4.0 103 chr2R 18808065 intergenic CG15096 - chr2R 18808116 intergenic CG15096 - chr2R 18808168 intergenic CG15096 - chr2R_4_18805001 chr2R_18805001 RAL-707 697 chr2R 18812964 18812983 chr2R 18813040 18813058 6 75 1.0 3.0 2.0 2.0 94 chr2R 18812964 intron CG15096 - chr2R 18813011 intron CG15096 - chr2R 18813058 intron CG15096 - chr2R_6_18810001 chr2R_18810001 RAL-707 698 chr2R 18835781 18835802 chr2R 18835863 18835884 7 82 1.5 0.0 0.8 3.9 103 chr2R 18835781 intron CG15083 + chr2R 18835832 intron CG15083 + chr2R 18835884 intron CG15083 + chr2R_7_18835001 chr2R_18835001 RAL-707 699 chr2R 18871645 18871676 chr2R 18871730 18871761 16 85 3.5 0.0 1.8 5.7 116 chr2R 18871645 intergenic not near genes chr2R 18871703 intergenic not near genes chr2R 18871761 intergenic not near genes chr2R_16_18870001 chr2R_18870001 RAL-707 700 chr2R 18876709 18876731 chr2R 18876800 18876820 5 91 1.0 1.5 1.2 2.3 111 chr2R 18876709 intergenic not near genes chr2R 18876764 intergenic not near genes chr2R 18876820 intergenic not near genes chr2R_5_18875001 chr2R_18875001 RAL-707 701 chr2R 18883084 18883117 chr2R 18883163 18883196 8 79 2.0 2.5 2.2 2.5 112 chr2R 18883084 intron sano + chr2R 18883140 intron sano + chr2R 18883196 intron sano + chr2R_8_18880001 chr2R_18880001 RAL-707 702 chr2R 18989026 18989047 chr2R 18989104 18989125 6 78 1.5 0.5 1.0 3.0 99 chr2R 18989026 intron tn + chr2R 18989076 intron tn + chr2R 18989125 intron tn + chr2R_6_18985001 chr2R_18985001 RAL-707 703 chr2R 19042691 19042698 chr2R 19042779 19042787 5 89 5.0 6.0 5.5 0.8 96 chr2R 19042691 intergenic not near genes chr2R 19042739 intergenic not near genes chr2R 19042787 intergenic not near genes chr2R_5_19040001 chr2R_19040001 RAL-707 704 chr2R 19067723 19067748 chr2R 19067799 19067824 6 76 1.0 1.0 1.0 3.0 101 chr2R 19067723 intron 5-HT1A + chr2R 19067774 intron 5-HT1A + chr2R 19067824 intron 5-HT1A + chr2R_6_19065001 chr2R_19065001 RAL-707 705 chr2R 19105500 19105524 chr2R 19105586 19105610 8 86 2.5 1.5 2.0 2.7 110 chr2R 19105500 intron 5-HT1A + chr2R 19105555 intron 5-HT1A + chr2R 19105610 intron 5-HT1A + chr2R_8_19105001 chr2R_19105001 RAL-707 706 chr2R 19177869 19177899 chr2R 19177948 19177971 11 78 5.0 3.0 4.0 2.2 102 chr2R 19177869 3` UTR CG10737 + chr2R 19177920 3` UTR CG10737 + chr2R 19177971 3` UTR CG10737 + chr2R_11_19175001 chr2R_19175001 RAL-707 707 chr2R 19234838 19234860 chr2R 19234920 19234942 4 82 2.0 1.5 1.8 1.4 104 chr2R 19234838 intron cora + chr2R 19234890 intron cora + chr2R 19234942 intron cora + chr2R_4_19230001 chr2R_19230001 RAL-707 708 chr2R 19253095 19253127 chr2R 19253185 19253217 11 89 1.5 1.5 1.5 4.4 122 chr2R 19253095 intron CG33453 - chr2R 19253156 exon CG33453 - chr2R 19253217 5` UTR CG33453 - chr2R_11_19250001 chr2R_19250001 RAL-707 709 chr2R 19300973 19300990 chr2R 19301056 19301073 4 83 2.5 2.5 2.5 1.1 100 chr2R 19300973 intron Tab2 + chr2R 19301023 intron Tab2 + chr2R 19301073 intron Tab2 + chr2R_4_19300001 chr2R_19300001 RAL-707 710 chr2R 19466597 19466620 chr2R 19466691 19466714 4 94 1.5 4.0 2.8 1.1 117 chr2R 19466597 intron par-1 + chr2R 19466656 intron par-1 + chr2R 19466714 intron par-1 + chr2R_4_19465001 chr2R_19465001 RAL-707 711 chr2R 19714704 19714719 chr2R 19714780 19714795 6 76 0.0 1.0 0.5 4.0 91 chr2R 19714704 3` UTR CG8517 + chr2R 19714750 3` UTR CG8517 + chr2R 19714795 3` UTR CG8517 + chr2R_6_19710001 chr2R_19710001 RAL-707 712 chr2R 19837720 19837748 chr2R 19837818 19837847 8 98 1.0 1.5 1.2 3.6 127 chr2R 19837720 intergenic not near genes chr2R 19837784 intergenic not near genes chr2R 19837847 intergenic not near genes chr2R_8_19835001 chr2R_19835001 RAL-707 713 chr2R 19897096 19897122 chr2R 19897181 19897208 16 85 0.5 2.0 1.2 7.3 112 chr2R 19897096 intergenic CR44572 - chr2R 19897152 intergenic CR44572 - chr2R 19897208 intergenic CR44572 - chr2R_16_19895001 chr2R_19895001 RAL-707 714 chr2R 19904202 19904235 chr2R 19904282 19904314 4 79 1.0 4.5 2.8 1.1 112 chr2R 19904202 intergenic not near genes chr2R 19904258 intergenic not near genes chr2R 19904314 intergenic not near genes chr2R_4_19900001 chr2R_19900001 RAL-707 715 chr2R 19914845 19914877 chr2R 19922257 19922289 mdg1 9 7412 3.5 2.5 3.0 2.2 7444 chr2R 19914845 intergenic not near genes chr2R 19918567 intergenic not near genes chr2R 19922289 intergenic not near genes chr2R_9_19915001 chr2R_19915001 RAL-707 716 chr2R 19957434 19957462 chr2R 19962635 19962664 copia 8 5201 1.5 1.5 1.5 3.2 5230 chr2R 19957434 intergenic CG44623 + chr2R 19960049 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_8_19960001 chr2R_19960001 RAL-707 717 chr2R 19967514 19967528 chr2R 19967693 19967706 5 179 1.5 4.0 2.8 1.3 192 chr2R 19967514 intergenic not near genes chr2R 19967610 intergenic not near genes chr2R 19967706 intergenic not near genes chr2R_5_19965001 chr2R_19965001 RAL-707 718 chr2R 20269053 20269071 chr2R 20278045 20278065 10 8993 22.0 21.5 21.8 0.4 9012 chr2R 20269053 exon CG8908 + chr2R 20273559 exon CG10444 - chr2R 20278065 exon CG9143 - chr2R_10_20270001 chr2R_20270001 RAL-707 719 chr2R 20326759 20326781 chr2R 20326836 20326858 8 76 3.0 1.5 2.2 2.5 99 chr2R 20326759 5` UTR MED8 - chr2R 20326808 intergenic MED8 -,CG8929 + chr2R 20326858 intergenic MED8 -,CG8929 + chr2R_8_20325001 chr2R_20325001 RAL-707 720 chr2R 20338761 20338784 chr2R 20338839 20338864 4 80 1.5 0.0 0.8 2.2 103 chr2R 20338761 intergenic not near genes chr2R 20338812 intergenic not near genes chr2R 20338864 intergenic not near genes chr2R_4_20335001 chr2R_20335001 RAL-707 721 chr2R 20523042 20523069 chr2R 20523153 20523180 12 111 2.5 4.0 3.2 2.9 138 chr2R 20523042 intergenic not near genes chr2R 20523111 intergenic not near genes chr2R 20523180 intergenic not near genes chr2R_12_20520001 chr2R_20520001 RAL-707 722 chr2R 20725052 20725079 chr2R 20725173 20725201 6 122 3.5 3.5 3.5 1.3 149 chr2R 20725052 intron dpr + chr2R 20725126 intron dpr + chr2R 20725201 intron dpr + chr2R_6_20725001 chr2R_20725001 RAL-707 723 chr2R 20739442 20739470 chr2R 20744210 20744238 F-element 5 4768 2.0 3.0 2.5 1.4 4796 chr2R 20739442 intron dpr + chr2R 20741840 intron dpr + chr2R 20744238 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-707 724 chr2R 20783312 20783333 chr2R 20788084 20788104 F-element 5 4772 2.5 2.5 2.5 1.4 4792 chr2R 20783312 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-707 725 chr2R 20962905 20962928 chr2R 20963003 20963026 6 98 5.0 4.0 4.5 1.1 121 chr2R 20962905 intergenic not near genes chr2R 20962966 intergenic not near genes chr2R 20963026 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-707 726 chr2R 21117477 21117491 chr2R 21117833 21117847 4 356 2.5 1.5 2.0 1.3 370 chr2R 21117477 intron ktub + chr2R 21117662 intron ktub + chr2R 21117847 intron ktub + chr2R_4_21115001 chr2R_21115001 RAL-707 727 chr2R 21136897 21136940 chr2R 21136981 21137018 10 82 0.0 1.5 0.8 5.6 121 chr2R 21136897 intron Magi - chr2R 21136958 intron Magi - chr2R 21137018 intron Magi - chr2R_10_21135001 chr2R_21135001 RAL-707 728 chr2R 21188220 21188233 chr2R 21188301 21188314 7 81 4.0 3.5 3.8 1.5 94 chr2R 21188220 exon tud + chr2R 21188267 intron tud + chr2R 21188314 intron tud + chr2R_7_21185001 chr2R_21185001 RAL-707 729 chr2R 21478290 21478304 chr2R 21478477 21478491 4 186 2.0 2.0 2.0 1.3 201 chr2R 21478290 intron Sdc - chr2R 21478390 intron Sdc - chr2R 21478491 intron Sdc - chr2R_4_21475001 chr2R_21475001 RAL-707 730 chr2R 21505768 21505795 chr2R 21505849 21505876 8 81 1.0 4.0 2.5 2.3 108 chr2R 21505768 intron MESK2 + chr2R 21505822 intron MESK2 + chr2R 21505876 intron MESK2 + chr2R_8_21505001 chr2R_21505001 RAL-707 731 chr2R 21612366 21612379 chr2R 21612454 21612467 7 88 3.5 2.0 2.8 1.8 101 chr2R 21612366 intron CG15673 - chr2R 21612416 intron CG15673 - chr2R 21612467 intron CG15673 - chr2R_7_21610001 chr2R_21610001 RAL-707 732 chr2R 21625817 21625821 chr2R 21625893 21625897 6 76 4.0 4.5 4.2 1.2 80 chr2R 21625817 intron mahj + chr2R 21625857 intron mahj + chr2R 21625897 intron mahj + chr2R_6_21625001 chr2R_21625001 RAL-707 733 chr2R 21738280 21738307 chr2R 21747440 21747467 roo 5 9158 2.5 0.5 1.5 2.0 9187 chr2R 21738280 intergenic not near genes chr2R 21742874 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-707 734 chr2R 21832427 21832454 chr2R 21832833 21832860 10 406 4.5 2.0 3.2 2.4 433 chr2R 21832427 intergenic CG34040 - chr2R 21832644 exon CG34040 - chr2R 21832860 exon CG34040 - chr2R_10_21830001 chr2R_21830001 RAL-707 735 chr2R 21906271 21906302 chr2R 21906372 21906403 8 101 2.5 2.0 2.2 2.5 132 chr2R 21906271 intron Fili + chr2R 21906337 intron Fili + chr2R 21906403 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-707 736 chr2R 22009790 22009806 chr2R 22009866 22009882 6 76 0.0 3.0 1.5 2.4 92 chr2R 22009790 intron CG34370 - chr2R 22009836 intron CG34370 - chr2R 22009882 intron CG34370 - chr2R_6_22005001 chr2R_22005001 RAL-707 737 chr2R 22185675 22185708 chr2R 22185774 22185807 7 99 2.0 0.0 1.0 3.5 132 chr2R 22185675 3` UTR MED16 + chr2R 22185741 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-707 738 chr2R 22349693 22349722 chr2R 22351472 22351506 jockey 10 1783 3.0 3.0 3.0 2.5 1813 chr2R 22349693 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351506 intron Liprin-gamma - chr2R_10_22350001 chr2R_22350001 RAL-707 739 chr2R 22360380 22360394 chr2R 22360813 22360826 jockey 4 432 5.0 2.0 3.5 0.9 446 chr2R 22360380 intron Liprin-gamma - chr2R 22360603 intron Liprin-gamma - chr2R 22360826 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-707 740 chr2R 22499854 22499886 chr2R 22499930 22499962 11 76 0.0 6.0 3.0 2.8 108 chr2R 22499854 intron px - chr2R 22499908 intron px - chr2R 22499962 intron px - chr2R_11_22495001 chr2R_22495001 RAL-707 741 chr2R 22503873 22503893 chr2R 22503968 22503988 9 95 0.5 1.5 1.0 4.5 115 chr2R 22503873 intron px - chr2R 22503930 intron px - chr2R 22503988 intron px - chr2R_9_22500001 chr2R_22500001 RAL-707 742 chr2R 22525757 22525786 chr2R 22529312 22529341 jockey 4 3555 1.5 3.5 2.5 1.1 3584 chr2R 22525757 intron px - chr2R 22527549 intron px - chr2R 22529341 intron px - chr2R_4_22525001 chr2R_22525001 RAL-707 743 chr2R 22574168 22574187 chr2R 22574248 22574267 5 80 0.5 2.0 1.2 2.3 99 chr2R 22574168 intron dnr1 - chr2R 22574218 intron dnr1 - chr2R 22574267 intron dnr1 - chr2R_5_22570001 chr2R_22570001 RAL-707 744 chr2R 22620828 22620852 chr2R 22620928 22620952 8 100 1.0 0.0 0.5 5.3 124 chr2R 22620828 5` UTR CG33143 + chr2R 22620890 5` UTR CG33143 + chr2R 22620952 5` UTR CG33143 + chr2R_8_22620001 chr2R_22620001 RAL-707 745 chr2R 22624196 22624209 chr2R 22624277 22624290 9 80 2.0 4.0 3.0 2.2 94 chr2R 22624196 intron CG33143 + chr2R 22624243 intron CG33143 + chr2R 22624290 intron CG33143 + chr2R_9_22620001 chr2R_22620001 RAL-707 746 chr2R 22723233 22723265 chr2R 22723309 22723341 7 76 1.5 2.0 1.8 2.5 108 chr2R 22723233 intron jbug - chr2R 22723287 intron jbug - chr2R 22723341 intron jbug - chr2R_7_22720001 chr2R_22720001 RAL-707 747 chr2R 22774968 22774997 chr2R 22775386 22775416 jockey 12 419 4.5 5.0 4.8 2.1 448 chr2R 22774968 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-707 748 chr2R 22941824 22941855 chr2R 22941903 22941934 10 79 1.0 2.5 1.8 3.6 110 chr2R 22941824 intergenic CG42694 + chr2R 22941879 5` UTR CG42694 + chr2R 22941934 5` UTR CG42694 + chr2R_10_22940001 chr2R_22940001 RAL-707 749 chr2R 22988312 22988323 chr2R 22988393 22988404 7 81 1.5 3.0 2.2 2.2 92 chr2R 22988312 intron twi + chr2R 22988358 intron twi + chr2R 22988404 intron twi + chr2R_7_22985001 chr2R_22985001 RAL-707 750 chr2R 23029612 23029637 chr2R 23029689 23029713 11 77 2.0 3.5 2.8 2.9 101 chr2R 23029612 intron,intron twi +,CG42741 - chr2R 23029662 intron,intron twi +,CG42741 - chr2R 23029713 intron,intron twi +,CG42741 - chr2R_11_23025001 chr2R_23025001 RAL-707 751 chr2R 23052651 23052688 chr2R 23052727 23052764 14 76 2.0 2.0 2.0 4.7 113 chr2R 23052651 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052764 intergenic not near genes chr2R_14_23050001 chr2R_23050001 RAL-707 752 chr2R 23061772 23061781 chr2R 23061866 23061875 4 94 4.5 3.0 3.8 0.8 103 chr2R 23061772 3` UTR l(2)06496 - chr2R 23061824 3` UTR l(2)06496 - chr2R 23061875 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-707 753 chr2R 23133457 23133472 chr2R 23133535 23133551 4 78 0.0 4.0 2.0 1.3 94 chr2R 23133457 intergenic not near genes chr2R 23133504 intergenic not near genes chr2R 23133551 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-707 754 chr2R 23158346 23158355 chr2R 23158423 23158432 5 76 4.5 6.5 5.5 0.8 86 chr2R 23158346 intron CG9899 + chr2R 23158389 intron CG9899 + chr2R 23158432 intron CG9899 + chr2R_5_23155001 chr2R_23155001 RAL-707 755 chr2R 23175044 23175065 chr2R 23175120 23175142 6 77 2.5 3.5 3.0 1.5 98 chr2R 23175044 intron CG34371 - chr2R 23175093 intron CG34371 - chr2R 23175142 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-707 756 chr2R 23186104 23186122 chr2R 23186249 23186267 5 145 0.0 4.0 2.0 1.7 163 chr2R 23186104 intron CG34371 - chr2R 23186186 intron CG34371 - chr2R 23186267 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-707 757 chr2R 23186573 23186601 chr2R 23186651 23186679 9 78 2.5 0.5 1.5 3.6 106 chr2R 23186573 intron CG34371 - chr2R 23186626 intron CG34371 - chr2R 23186679 intron CG34371 - chr2R_9_23185001 chr2R_23185001 RAL-707 758 chr2R 23356278 23356310 chr2R 23356363 23356399 17 88 2.5 2.0 2.2 5.3 121 chr2R 23356278 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356399 3` UTR,3` UTR Rpi +,CG3500 - chr2R_17_23355001 chr2R_23355001 RAL-707 759 chr2R 23423740 23423772 chr2R 23423898 23423930 8 158 1.5 2.0 1.8 2.9 190 chr2R 23423740 intron CG9815 - chr2R 23423835 intron CG9815 - chr2R 23423930 intron CG9815 - chr2R_8_23420001 chr2R_23420001 RAL-707 760 chr2R 23437230 23437244 chr2R 23437307 23437321 4 76 2.5 4.0 3.2 1.0 91 chr2R 23437230 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437321 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-707 761 chr2R 23529577 23529605 chr2R 23537153 23537180 412 11 7576 2.0 5.0 3.5 2.4 7603 chr2R 23529577 intron bw - chr2R 23533378 intron bw - chr2R 23537180 exon bw - chr2R_11_23530001 chr2R_23530001 RAL-707 762 chr2R 23589180 23589194 chr2R 23589257 23589271 5 77 6.0 7.0 6.5 0.7 91 chr2R 23589180 intron apt + chr2R 23589226 intron apt + chr2R 23589271 intron apt + chr2R_5_23585001 chr2R_23585001 RAL-707 763 chr2R 23705625 23705653 chr2R 23710904 23710931 10 5279 33.0 38.0 35.5 0.3 5306 chr2R 23705625 exon l(2)not - chr2R 23708278 intron,exon l(2)not -,l(2)tid + chr2R 23710931 intergenic not near genes chr2R_10_23705001 chr2R_23705001 RAL-707 764 chr2R 23886689 23886722 chr2R 23886777 23886810 14 87 2.0 3.5 2.8 3.7 121 chr2R 23886689 intergenic CG5597 + chr2R 23886750 intergenic CG5597 + chr2R 23886810 intergenic CG5597 + chr2R_14_23885001 chr2R_23885001 RAL-707 765 chr2R 23914298 23914330 chr2R 23921921 23921954 412 11 7624 2.5 3.5 3.0 2.8 7656 chr2R 23914298 exon kcc + chr2R 23918126 intron kcc + chr2R 23921954 intron kcc + chr2R_11_23915001 chr2R_23915001 RAL-707 766 chr2R 23986530 23986546 chr2R 23986610 23986626 5 80 2.0 4.0 3.0 1.2 96 chr2R 23986530 intron Phm - chr2R 23986578 intron Phm - chr2R 23986626 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-707 767 chr2R 23993918 23993944 chr2R 23993998 23994024 6 80 5.5 4.0 4.8 1.0 106 chr2R 23993918 intron CG3860 - chr2R 23993971 intron CG3860 - chr2R 23994024 intron CG3860 - chr2R_6_23990001 chr2R_23990001 RAL-707 768 chr2R 24031380 24031414 chr2R 24031464 24031497 9 84 2.5 2.0 2.2 2.8 117 chr2R 24031380 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-707 769 chr2R 24045874 24045899 chr2R 24045956 24045983 10 84 3.0 2.5 2.8 2.6 109 chr2R 24045874 intron tsr - chr2R 24045928 intron tsr - chr2R 24045983 intron tsr - chr2R_10_24045001 chr2R_24045001 RAL-707 770 chr2R 24138310 24138338 chr2R 24138469 24138497 7 159 3.0 5.0 4.0 1.4 187 chr2R 24138310 intergenic CG4065 -,CR44826 + chr2R 24138404 intergenic CR44826 +,CG4065 - chr2R 24138497 intergenic CR44826 +,CG4065 - chr2R_7_24135001 chr2R_24135001 RAL-707 771 chr2R 24177234 24177268 chr2R 24184719 24184753 412 12 7485 3.0 2.5 2.8 3.2 7519 chr2R 24177234 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_12_24180001 chr2R_24180001 RAL-707 772 chr2R 24243746 24243768 chr2R 24243848 24243870 4 102 3.0 1.5 2.2 1.2 124 chr2R 24243746 intron nord + chr2R 24243808 intron nord + chr2R 24243870 intron nord + chr2R_4_24240001 chr2R_24240001 RAL-707 773 chr2R 24278320 24278362 chr2R 24278403 24278440 10 80 0.5 7.0 3.8 2.1 120 chr2R 24278320 intron nvy + chr2R 24278380 intron nvy + chr2R 24278440 intron nvy + chr2R_10_24275001 chr2R_24275001 RAL-707 774 chr2R 24291946 24291978 chr2R 24292079 24292111 12 133 2.5 2.5 2.5 3.4 165 chr2R 24291946 intergenic not near genes chr2R 24292028 intergenic not near genes chr2R 24292111 intergenic not near genes chr2R_12_24290001 chr2R_24290001 RAL-707 775 chr2R 24509306 24509339 chr2R 24509390 24509423 8 84 3.5 2.5 3.0 2.0 117 chr2R 24509306 intergenic Letm1 - chr2R 24509364 intergenic Letm1 - chr2R 24509423 intergenic Letm1 - chr2R_8_24505001 chr2R_24505001 RAL-707 776 chr2R 24590112 24590146 chr2R 24590204 24590237 20 92 4.0 3.0 3.5 4.4 125 chr2R 24590112 intron pio + chr2R 24590174 intron pio + chr2R 24590237 intron pio + chr2R_20_24590001 chr2R_24590001 RAL-707 777 chr2R 24633993 24634025 chr2R 24634074 24634105 8 80 4.0 3.0 3.5 1.8 112 chr2R 24633993 intron CG13594 - chr2R 24634049 intron CG13594 - chr2R 24634105 intron CG13594 - chr2R_8_24630001 chr2R_24630001 RAL-707 778 chr2R 24710086 24710116 chr2R 24710166 24710197 9 80 1.5 2.5 2.0 3.0 111 chr2R 24710086 intron Mid1 - chr2R 24710142 intron Mid1 - chr2R 24710197 intron Mid1 - chr2R_9_24710001 chr2R_24710001 RAL-707 779 chr2R 24719800 24719826 chr2R 24719908 24719938 20 111 2.0 5.0 3.5 4.4 138 chr2R 24719800 intron Mid1 - chr2R 24719869 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_20_24715001 chr2R_24715001 RAL-707 780 chr2R 24721250 24721276 chr2R 24721401 24721427 6 151 3.5 4.0 3.8 1.2 177 chr2R 24721250 intron Mid1 - chr2R 24721338 intron Mid1 - chr2R 24721427 intron Mid1 - chr2R_6_24720001 chr2R_24720001 RAL-707 781 chr2R 24727886 24727914 chr2R 24735393 24735422 mdg1 11 7508 5.5 7.5 6.5 1.5 7536 chr2R 24727886 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735422 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-707 782 chr2R 24763608 24763642 chr2R 24765584 24765618 G2 17 1976 5.0 3.5 4.2 3.3 2010 chr2R 24763608 exon CG3894 + chr2R 24764613 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_17_24760001 chr2R_24760001 RAL-707 783 chr2R 24767994 24768022 chr2R 24768080 24768108 12 85 1.0 2.0 1.5 4.8 114 chr2R 24767994 5` UTR GstE12 - chr2R 24768051 5` UTR GstE12 - chr2R 24768108 5` UTR GstE12 - chr2R_12_24765001 chr2R_24765001 RAL-707 784 chr2R 24856570 24856599 chr2R 24856930 24856959 22 360 1.0 2.0 1.5 8.8 389 chr2R 24856570 intergenic not near genes chr2R 24856764 intergenic not near genes chr2R 24856959 intergenic not near genes chr2R_22_24855001 chr2R_24855001 RAL-707 785 chr2R 24859840 24859869 chr2R 24859926 24859955 7 86 3.0 0.5 1.8 2.5 115 chr2R 24859840 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859955 5` UTR CR44829 + chr2R_7_24855001 chr2R_24855001 RAL-707 786 chr2R 24884050 24884076 chr2R 24884132 24884158 6 82 2.0 2.5 2.2 1.9 108 chr2R 24884050 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-707 787 chr2R 24927848 24927873 chr2R 24927931 24927956 7 83 1.5 2.5 2.0 2.3 108 chr2R 24927848 intron pain - chr2R 24927902 intron pain - chr2R 24927956 intron pain - chr2R_7_24925001 chr2R_24925001 RAL-707 788 chr2R 24959987 24960009 chr2R 24960088 24960111 5 101 1.5 3.5 2.5 1.4 124 chr2R 24959987 3` UTR CG2765 - chr2R 24960049 3` UTR CG2765 - chr2R 24960111 3` UTR CG2765 - chr2R_5_24960001 chr2R_24960001 RAL-707 789 chr2R 25022641 25022671 chr2R 25022725 25022755 10 84 1.0 3.5 2.2 3.1 114 chr2R 25022641 intron uzip + chr2R 25022698 intron uzip + chr2R 25022755 intron uzip + chr2R_10_25020001 chr2R_25020001 RAL-707 790 chr2R 25097858 25097886 chr2R 25097956 25097984 6 98 1.0 1.5 1.2 2.7 126 chr2R 25097858 intron lov - chr2R 25097921 intron lov - chr2R 25097984 intron lov - chr2R_6_25095001 chr2R_25095001 RAL-707 791 chr2R 25141655 25141665 chr2R 25159345 25159355 roo 4 17690 3.5 2.0 2.8 1.1 17700 chr2R 25141655 intergenic not near genes chr2R 25150505 intergenic not near genes chr2R 25159355 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-707 792 chr2R 25234769 25234796 chr2R 25234849 25234876 5 80 2.0 2.0 2.0 1.7 107 chr2R 25234769 intron CG9380 - chr2R 25234822 intron CG9380 - chr2R 25234876 intron CG9380 - chr2R_5_25230001 chr2R_25230001 RAL-707 793 chr2R 25253447 25253475 chr2R 25253522 25253551 4 75 3.0 3.5 3.2 1.0 104 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253499 intron,intron CG9380 -,CG30428 + chr2R 25253551 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-707 794 chr3L 68998 69015 chr3L 69085 69102 8 87 3.0 6.0 4.5 1.5 104 chr3L 68998 intergenic Lsp1gamma +,CR44510 + chr3L 69050 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-707 795 chr3L 88763 88777 chr3L 90682 90697 6 1918 2.5 7.0 4.8 1.0 1934 chr3L 88763 intergenic not near genes chr3L 89730 intergenic not near genes chr3L 90697 intergenic not near genes chr3L_6_85001 chr3L_85001 RAL-707 796 chr3L 110219 110243 chr3L 119386 119409 roo 7 9167 1.5 2.0 1.8 2.5 9190 chr3L 110219 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-707 797 chr3L 285193 285219 chr3L 285272 285298 7 79 4.0 1.5 2.8 1.8 105 chr3L 285193 intron RhoGEF3 + chr3L 285246 intron RhoGEF3 + chr3L 285298 intron RhoGEF3 + chr3L_7_285001 chr3L_285001 RAL-707 798 chr3L 390970 390986 chr3L 391076 391091 4 106 7.0 7.0 7.0 0.5 121 chr3L 390970 intron trh - chr3L 391030 intron trh - chr3L 391091 intron trh - chr3L_4_390001 chr3L_390001 RAL-707 799 chr3L 402693 402718 chr3L 409746 409771 297 13 7053 4.0 11.0 7.5 1.5 7078 chr3L 402693 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_13_405001 chr3L_405001 RAL-707 800 chr3L 421051 421086 chr3L 421145 421181 4 95 10.5 9.0 9.8 0.4 130 chr3L 421051 intergenic not near genes chr3L 421116 intergenic not near genes chr3L 421181 intergenic not near genes chr3L_4_420001 chr3L_420001 RAL-707 801 chr3L 459988 460004 chr3L 460065 460081 6 77 3.5 5.0 4.2 1.2 93 chr3L 459988 intron klar - chr3L 460034 intron klar - chr3L 460081 intron klar - chr3L_6_460001 chr3L_460001 RAL-707 802 chr3L 524743 524775 chr3L 524826 524857 4 82 5.5 4.5 5.0 0.7 114 chr3L 524743 intron klar - chr3L 524800 intron klar - chr3L 524857 intron klar - chr3L_4_520001 chr3L_520001 RAL-707 803 chr3L 642480 642498 chr3L 642570 642589 6 91 3.5 4.0 3.8 1.2 109 chr3L 642480 5` UTR CR43334 + chr3L 642534 5` UTR CR43334 + chr3L 642589 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-707 804 chr3L 651387 651422 chr3L 651475 651509 9 88 7.0 6.5 6.8 1.2 122 chr3L 651387 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651509 intergenic CG3402 -,Gale + chr3L_9_650001 chr3L_650001 RAL-707 805 chr3L 789912 789945 chr3L 790397 790430 roo 11 485 3.0 0.5 1.8 3.9 518 chr3L 789912 intergenic not near genes chr3L 790171 intergenic not near genes chr3L 790430 intergenic not near genes chr3L_11_790001 chr3L_790001 RAL-707 806 chr3L 857999 858031 chr3L 866480 866512 Tirant 7 8481 1.5 2.5 2.0 2.3 8513 chr3L 857999 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_7_860001 chr3L_860001 RAL-707 807 chr3L 933915 933938 chr3L 934018 934041 9 103 3.0 2.0 2.5 2.6 126 chr3L 933915 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934041 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-707 808 chr3L 939771 939800 chr3L 940891 940921 jockey 10 1121 5.0 4.0 4.5 1.8 1150 chr3L 939771 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-707 809 chr3L 961018 961031 chr3L 961111 961123 4 92 3.5 0.5 2.0 1.3 105 chr3L 961018 intron Glut1 + chr3L 961070 intron Glut1 + chr3L 961123 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-707 810 chr3L 1003052 1003070 chr3L 1003129 1003147 8 77 5.5 7.5 6.5 1.1 95 chr3L 1003052 intron trio - chr3L 1003100 intron trio - chr3L 1003147 intron trio - chr3L_8_1000001 chr3L_1000001 RAL-707 811 chr3L 1008402 1008413 chr3L 1008503 1008514 5 101 12.5 16.0 14.2 0.3 112 chr3L 1008402 intron trio - chr3L 1008458 intron trio - chr3L 1008514 intron trio - chr3L_5_1005001 chr3L_1005001 RAL-707 812 chr3L 1015141 1015163 chr3L 1015229 1015250 6 88 5.5 4.5 5.0 1.0 109 chr3L 1015141 intron trio - chr3L 1015196 intron trio - chr3L 1015250 intron trio - chr3L_6_1015001 chr3L_1015001 RAL-707 813 chr3L 1021384 1021628 chr3L 1021464 1021704 9 77 3.5 18.0 10.8 0.8 320 chr3L 1021384 intron trio - chr3L 1021544 intron trio - chr3L 1021704 intron trio - chr3L_9_1020001 chr3L_1020001 RAL-707 814 chr3L 1047353 1047378 chr3L 1055165 1055187 412 6 7811 1.5 2.0 1.8 2.1 7834 chr3L 1047353 intron bab1 - chr3L 1051270 intron bab1 - chr3L 1055187 intron bab1 - chr3L_6_1050001 chr3L_1050001 RAL-707 815 chr3L 1109634 1109659 chr3L 1109722 1109747 9 88 7.0 5.0 6.0 1.3 113 chr3L 1109634 intergenic not near genes chr3L 1109690 intergenic not near genes chr3L 1109747 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-707 816 chr3L 1154129 1154143 chr3L 1163279 1163293 roo 8 9149 4.0 0.5 2.2 2.5 9164 chr3L 1154129 intron bab2 - chr3L 1158711 intron bab2 - chr3L 1163293 intron bab2 - chr3L_8_1155001 chr3L_1155001 RAL-707 817 chr3L 1189626 1189649 chr3L 1189710 1189734 6 85 7.0 5.0 6.0 0.9 108 chr3L 1189626 5` UTR CG13912 + chr3L 1189680 5` UTR CG13912 + chr3L 1189734 5` UTR CG13912 + chr3L_6_1185001 chr3L_1185001 RAL-707 818 chr3L 1219594 1219625 chr3L 1227327 1227358 412 16 7733 2.0 3.0 2.5 4.6 7764 chr3L 1219594 intron mwh + chr3L 1223476 intron mwh + chr3L 1227358 intron mwh + chr3L_16_1220001 chr3L_1220001 RAL-707 819 chr3L 1260146 1260163 chr3L 1260226 1260243 4 80 5.5 3.0 4.2 0.8 97 chr3L 1260146 intron CG9134 + chr3L 1260194 intron CG9134 + chr3L 1260243 intron CG9134 + chr3L_4_1260001 chr3L_1260001 RAL-707 820 chr3L 1310986 1311014 chr3L 1315846 1315874 4 4860 27.0 23.0 25.0 0.2 4888 chr3L 1310986 exon CG2469 + chr3L 1313430 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-707 821 chr3L 1347156 1347193 chr3L 1347241 1347278 10 85 4.0 8.0 6.0 1.4 122 chr3L 1347156 intron Ptp61F - chr3L 1347217 intron Ptp61F - chr3L 1347278 intron Ptp61F - chr3L_10_1345001 chr3L_1345001 RAL-707 822 chr3L 1374433 1374451 chr3L 1374510 1374524 5 76 4.5 2.5 3.5 1.1 91 chr3L 1374433 intron,intron Ptp61F -,ru + chr3L 1374478 intron,intron Ptp61F -,ru + chr3L 1374524 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-707 823 chr3L 1415774 1415806 chr3L 1415856 1415888 13 82 3.5 4.0 3.8 2.7 114 chr3L 1415774 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415888 intron Ptp61F - chr3L_13_1415001 chr3L_1415001 RAL-707 824 chr3L 1480998 1481026 chr3L 1481078 1481106 10 80 1.0 4.0 2.5 2.9 108 chr3L 1480998 intron stet - chr3L 1481052 intron stet - chr3L 1481106 intron stet - chr3L_10_1480001 chr3L_1480001 RAL-707 825 chr3L 1485737 1485742 chr3L 1486908 1486912 1360 4 1170 4.5 8.0 6.2 0.6 1175 chr3L 1485737 intron stet - chr3L 1486324 intron stet - chr3L 1486912 intron stet - chr3L_4_1485001 chr3L_1485001 RAL-707 826 chr3L 1571485 1571494 chr3L 1571570 1571579 5 85 0.5 4.0 2.2 1.6 94 chr3L 1571485 intron CG12004 + chr3L 1571532 intron CG12004 + chr3L 1571579 intron CG12004 + chr3L_5_1570001 chr3L_1570001 RAL-707 827 chr3L 1581158 1581182 chr3L 1581492 1581514 10 333 0.0 3.0 1.5 4.0 356 chr3L 1581158 intron CG13917 + chr3L 1581336 intron CG13917 + chr3L 1581514 intron CG13917 + chr3L_10_1580001 chr3L_1580001 RAL-707 828 chr3L 1582446 1582462 chr3L 1582526 1582543 5 81 0.0 4.5 2.2 1.6 97 chr3L 1582446 intron CG13917 + chr3L 1582494 intron CG13917 + chr3L 1582543 intron CG13917 + chr3L_5_1580001 chr3L_1580001 RAL-707 829 chr3L 1600185 1600188 chr3L 11777678 11777678 6 10177491 8.0 21.5 14.8 0.4 10177493 chr3L 1600185 3` UTR CG13917 + chr3L 6688932 intergenic SP1173 - chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_6685001 chr3L_6685001 RAL-707 830 chr3L 1661564 1661600 chr3L 1661647 1661683 10 82 2.5 3.5 3.0 2.5 119 chr3L 1661564 exon CG7971 - chr3L 1661624 intron CG7971 - chr3L 1661683 intron CG7971 - chr3L_10_1660001 chr3L_1660001 RAL-707 831 chr3L 1677713 1677730 chr3L 1677795 1677819 5 86 1.0 1.5 1.2 2.3 106 chr3L 1677713 intron CG7991 + chr3L 1677766 intron CG7991 + chr3L 1677819 intron CG7991 + chr3L_5_1675001 chr3L_1675001 RAL-707 832 chr3L 1740855 1740880 chr3L 1741095 1741121 pogo 7 241 2.5 1.0 1.8 2.5 266 chr3L 1740855 intron Gk + chr3L 1740988 intron Gk + chr3L 1741121 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-707 833 chr3L 1772214 1772240 chr3L 1772304 1772328 7 89 5.0 2.5 3.8 1.5 114 chr3L 1772214 3` UTR CG13933 - chr3L 1772271 3` UTR CG13933 - chr3L 1772328 3` UTR CG13933 - chr3L_7_1770001 chr3L_1770001 RAL-707 834 chr3L 1991118 1991150 chr3L 1991196 1991226 7 78 1.5 1.5 1.5 2.8 108 chr3L 1991118 intergenic not near genes chr3L 1991172 intergenic not near genes chr3L 1991226 intergenic not near genes chr3L_7_1990001 chr3L_1990001 RAL-707 835 chr3L 2011729 2011755 chr3L 2011930 2011956 9 201 3.0 4.0 3.5 2.0 227 chr3L 2011729 intergenic not near genes chr3L 2011842 intergenic not near genes chr3L 2011956 intergenic not near genes chr3L_9_2010001 chr3L_2010001 RAL-707 836 chr3L 2139205 2139234 chr3L 2139286 2139315 7 81 3.0 2.5 2.8 1.8 110 chr3L 2139205 intron zormin - chr3L 2139260 intron zormin - chr3L 2139315 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-707 837 chr3L 2168771 2168807 chr3L 2168862 2168898 10 91 2.0 4.0 3.0 2.5 127 chr3L 2168771 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-707 838 chr3L 2176684 2176716 chr3L 2177093 2177125 5 409 3.0 2.5 2.8 1.3 441 chr3L 2176684 intergenic not near genes chr3L 2176904 intergenic not near genes chr3L 2177125 intergenic not near genes chr3L_5_2175001 chr3L_2175001 RAL-707 839 chr3L 2282990 2283018 chr3L 2283066 2283094 8 76 4.0 1.5 2.8 2.1 104 chr3L 2282990 5` UTR MsR2 + chr3L 2283042 5` UTR MsR2 + chr3L 2283094 5` UTR MsR2 + chr3L_8_2280001 chr3L_2280001 RAL-707 840 chr3L 2308012 2308036 chr3L 2308118 2308141 5 106 0.0 3.0 1.5 2.0 129 chr3L 2308012 intergenic not near genes chr3L 2308076 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-707 841 chr3L 2331580 2331615 chr3L 2331657 2331692 13 77 0.5 1.0 0.8 7.2 112 chr3L 2331580 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331692 intron MsR1 + chr3L_13_2330001 chr3L_2330001 RAL-707 842 chr3L 2347085 2347104 chr3L 2347174 2347192 4 88 3.0 5.5 4.2 0.8 107 chr3L 2347085 intergenic not near genes chr3L 2347138 intergenic not near genes chr3L 2347192 intergenic not near genes chr3L_4_2345001 chr3L_2345001 RAL-707 843 chr3L 2351489 2351508 chr3L 2352040 2352062 5 553 2.5 3.0 2.8 1.3 573 chr3L 2351489 intergenic not near genes chr3L 2351776 intergenic not near genes chr3L 2352062 intergenic not near genes chr3L_5_2350001 chr3L_2350001 RAL-707 844 chr3L 2411337 2411344 chr3L 2411417 2411424 5 80 1.0 3.0 2.0 1.7 87 chr3L 2411337 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411424 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-707 845 chr3L 2447503 2447537 chr3L 2456658 2456693 roo 12 9155 3.5 1.5 2.5 3.4 9190 chr3L 2447503 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_12_2450001 chr3L_2450001 RAL-707 846 chr3L 2459140 2459157 chr3L 2459301 2459318 5 161 2.5 1.5 2.0 1.7 178 chr3L 2459140 intron CG45186 + chr3L 2459229 intron CG45186 + chr3L 2459318 intron CG45186 + chr3L_5_2455001 chr3L_2455001 RAL-707 847 chr3L 2481486 2481512 chr3L 2481569 2481596 9 83 2.0 4.0 3.0 2.2 110 chr3L 2481486 intron CG45186 + chr3L 2481541 intron CG45186 + chr3L 2481596 intron CG45186 + chr3L_9_2480001 chr3L_2480001 RAL-707 848 chr3L 2483613 2483621 chr3L 2483872 2483880 4 259 4.0 0.0 2.0 1.3 267 chr3L 2483613 intron CG45186 + chr3L 2483746 intron CG45186 + chr3L 2483880 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-707 849 chr3L 2533647 2533672 chr3L 2533729 2533754 6 82 8.0 3.5 5.8 0.9 107 chr3L 2533647 intron Spn - chr3L 2533700 intron Spn - chr3L 2533754 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-707 850 chr3L 2548257 2548287 chr3L 2548346 2548376 7 89 3.0 5.0 4.0 1.4 119 chr3L 2548257 intron Spn - chr3L 2548316 intron Spn - chr3L 2548376 intron Spn - chr3L_7_2545001 chr3L_2545001 RAL-707 851 chr3L 2561536 2561560 chr3L 2561612 2561637 6 77 4.0 2.5 3.2 1.4 101 chr3L 2561536 intron msn - chr3L 2561586 intron msn - chr3L 2561637 intron msn - chr3L_6_2560001 chr3L_2560001 RAL-707 852 chr3L 2581897 2581913 chr3L 2581991 2582006 5 94 0.5 1.5 1.0 2.5 109 chr3L 2581897 intron msn - chr3L 2581952 intron msn - chr3L 2582006 intron msn - chr3L_5_2580001 chr3L_2580001 RAL-707 853 chr3L 2702346 2702380 chr3L 2702426 2702459 13 80 4.0 4.5 4.2 2.5 113 chr3L 2702346 intron Fife - chr3L 2702402 intron Fife - chr3L 2702459 intron Fife - chr3L_13_2700001 chr3L_2700001 RAL-707 854 chr3L 2766747 2766764 chr3L 2766844 2766860 4 97 0.0 3.0 1.5 1.6 113 chr3L 2766747 intergenic Non2 +,Mrtf - chr3L 2766804 intergenic Non2 +,Mrtf - chr3L 2766860 intergenic Non2 +,Mrtf - chr3L_4_2765001 chr3L_2765001 RAL-707 855 chr3L 2854479 2854497 chr3L 2854557 2854574 7 76 2.0 3.0 2.5 2.0 95 chr3L 2854479 intron CG43444 - chr3L 2854526 intron CG43444 - chr3L 2854574 intron CG43444 - chr3L_7_2850001 chr3L_2850001 RAL-707 856 chr3L 3028343 3028373 chr3L 3028422 3028449 7 78 2.5 2.0 2.2 2.2 106 chr3L 3028343 intergenic not near genes chr3L 3028396 intergenic not near genes chr3L 3028449 intergenic not near genes chr3L_7_3025001 chr3L_3025001 RAL-707 857 chr3L 3040331 3040356 chr3L 3042120 3042145 S-element 8 1789 2.5 1.0 1.8 2.9 1814 chr3L 3040331 3` UTR CG2162 + chr3L 3041238 intergenic not near genes chr3L 3042145 intergenic Jafrac2 + chr3L_8_3040001 chr3L_3040001 RAL-707 858 chr3L 3281440 3281473 chr3L 3281936 3281969 Doc 16 495 2.0 4.5 3.2 3.8 529 chr3L 3281440 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_16_3280001 chr3L_3280001 RAL-707 859 chr3L 3294138 3294143 chr3L 3294229 3294234 4 91 0.5 1.5 1.0 2.0 96 chr3L 3294138 intron CG12009 + chr3L 3294186 intron CG12009 + chr3L 3294234 intron CG12009 + chr3L_4_3290001 chr3L_3290001 RAL-707 860 chr3L 3310292 3310320 chr3L 3310371 3310399 8 79 3.0 2.0 2.5 2.3 107 chr3L 3310292 intron ZnT63C + chr3L 3310346 intron ZnT63C + chr3L 3310399 intron ZnT63C + chr3L_8_3310001 chr3L_3310001 RAL-707 861 chr3L 3475072 3475107 chr3L 3475516 3475550 jockey 11 443 0.5 4.5 2.5 3.1 478 chr3L 3475072 intron CG42324 + chr3L 3475311 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-707 862 chr3L 3601302 3601320 chr3L 3606613 3606631 copia 5 5311 5.5 1.5 3.5 1.1 5329 chr3L 3601302 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606631 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-707 863 chr3L 3619406 3619432 chr3L 3619500 3619525 6 94 2.0 1.5 1.8 2.1 119 chr3L 3619406 intergenic not near genes chr3L 3619466 intergenic not near genes chr3L 3619525 intergenic not near genes chr3L_6_3615001 chr3L_3615001 RAL-707 864 chr3L 3622330 3622340 chr3L 3622407 3622419 7 79 0.0 0.0 0.0 7.0 89 chr3L 3622330 intergenic not near genes chr3L 3622374 intergenic not near genes chr3L 3622419 intergenic not near genes chr3L_7_3620001 chr3L_3620001 RAL-707 865 chr3L 3627240 3627264 chr3L 3627345 3627369 7 105 1.0 3.0 2.0 2.3 129 chr3L 3627240 intron dar1 + chr3L 3627304 intron dar1 + chr3L 3627369 intron dar1 + chr3L_7_3625001 chr3L_3625001 RAL-707 866 chr3L 3777066 3777070 chr3L 22908066 22908067 5 19131000 17.0 16.0 16.5 0.3 19131001 chr3L 3777066 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_13340001 chr3L_13340001 RAL-707 867 chr3L 3815052 3815078 chr3L 3815133 3815159 14 81 4.5 5.0 4.8 2.4 107 chr3L 3815052 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815159 intron,intron Scsalpha +,CR43932 - chr3L_14_3815001 chr3L_3815001 RAL-707 868 chr3L 3833749 3833770 chr3L 3833990 3834011 pogo 6 240 0.0 2.5 1.2 2.7 262 chr3L 3833749 intron enc + chr3L 3833880 intron enc + chr3L 3834011 intron enc + chr3L_6_3830001 chr3L_3830001 RAL-707 869 chr3L 3890961 3890994 chr3L 3891042 3891073 13 81 2.0 0.0 1.0 6.5 112 chr3L 3890961 intergenic not near genes chr3L 3891017 intergenic not near genes chr3L 3891073 intergenic not near genes chr3L_13_3890001 chr3L_3890001 RAL-707 870 chr3L 3955848 3955872 chr3L 3955938 3955961 6 90 3.0 1.0 2.0 2.0 113 chr3L 3955848 3` UTR CG12605 - chr3L 3955904 3` UTR CG12605 - chr3L 3955961 3` UTR CG12605 - chr3L_6_3955001 chr3L_3955001 RAL-707 871 chr3L 3968051 3968058 chr3L 3968129 3968137 4 79 0.5 0.0 0.2 3.3 86 chr3L 3968051 intergenic not near genes chr3L 3968094 intergenic not near genes chr3L 3968137 intergenic not near genes chr3L_4_3965001 chr3L_3965001 RAL-707 872 chr3L 3977444 3977459 chr3L 3977524 3977539 6 80 4.0 1.5 2.8 1.6 95 chr3L 3977444 intergenic not near genes chr3L 3977492 intergenic not near genes chr3L 3977539 intergenic not near genes chr3L_6_3975001 chr3L_3975001 RAL-707 873 chr3L 4015732 4015762 chr3L 4015815 4015845 7 83 0.5 0.5 0.5 4.7 113 chr3L 4015732 intergenic not near genes chr3L 4015788 intergenic not near genes chr3L 4015845 intergenic not near genes chr3L_7_4015001 chr3L_4015001 RAL-707 874 chr3L 4099486 4099489 chr3L 4099566 4099570 4 81 3.0 2.5 2.8 1.1 84 chr3L 4099486 intron CG14995 - chr3L 4099528 intron CG14995 - chr3L 4099570 intron CG14995 - chr3L_4_4095001 chr3L_4095001 RAL-707 875 chr3L 4195139 4195171 chr3L 4195243 4195273 9 103 4.0 4.0 4.0 1.8 134 chr3L 4195139 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195273 intron CG43367 + chr3L_9_4195001 chr3L_4195001 RAL-707 876 chr3L 4342410 4342440 chr3L 4342489 4342519 13 78 2.5 4.0 3.2 3.1 109 chr3L 4342410 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342519 intron Cip4 - chr3L_13_4340001 chr3L_4340001 RAL-707 877 chr3L 4353331 4353348 chr3L 4353863 4353881 4 533 2.5 5.5 4.0 0.8 550 chr3L 4353331 intron Cip4 - chr3L 4353606 intron Cip4 - chr3L 4353881 intron Cip4 - chr3L_4_4350001 chr3L_4350001 RAL-707 878 chr3L 4441836 4441866 chr3L 4441912 4441945 6 77 2.0 3.0 2.5 1.7 109 chr3L 4441836 intergenic not near genes chr3L 4441890 intergenic not near genes chr3L 4441945 intergenic not near genes chr3L_6_4440001 chr3L_4440001 RAL-707 879 chr3L 4784963 4784991 chr3L 4785172 4785200 7 209 0.5 0.0 0.2 5.8 237 chr3L 4784963 intron RhoGEF64C + chr3L 4785082 intron RhoGEF64C + chr3L 4785200 intron RhoGEF64C + chr3L_7_4785001 chr3L_4785001 RAL-707 880 chr3L 4901126 4901157 chr3L 4907316 4907347 diver 11 6190 3.5 0.0 1.8 3.9 6221 chr3L 4901126 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907347 intergenic not near genes chr3L_11_4900001 chr3L_4900001 RAL-707 881 chr3L 4958413 4958443 chr3L 4958501 4958531 8 88 2.0 1.5 1.8 2.9 118 chr3L 4958413 intron Con - chr3L 4958472 intron Con - chr3L 4958531 intron Con - chr3L_8_4955001 chr3L_4955001 RAL-707 882 chr3L 5030777 5030787 chr3L 5030847 5030862 6 74 5.5 5.5 5.5 0.9 85 chr3L 5030777 intron Con - chr3L 5030820 intron Con - chr3L 5030862 intron Con - chr3L_6_5030001 chr3L_5030001 RAL-707 883 chr3L 5045457 5045468 chr3L 5050238 5050249 Doc 4 4781 4.5 2.5 3.5 0.9 4792 chr3L 5045457 intron Con - chr3L 5047853 intron Con - chr3L 5050249 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-707 884 chr3L 5066308 5066326 chr3L 5066407 5066425 6 99 0.5 2.5 1.5 2.4 117 chr3L 5066308 intron Con - chr3L 5066366 intron Con - chr3L 5066425 intron Con - chr3L_6_5065001 chr3L_5065001 RAL-707 885 chr3L 5073026 5073045 chr3L 5073109 5073128 10 83 3.0 3.5 3.2 2.4 102 chr3L 5073026 intron Con - chr3L 5073077 intron Con - chr3L 5073128 intron Con - chr3L_10_5070001 chr3L_5070001 RAL-707 886 chr3L 5099484 5099518 chr3L 5099573 5099607 12 88 1.0 1.5 1.2 5.5 123 chr3L 5099484 intron CR34047 - chr3L 5099546 3` UTR CR34047 - chr3L 5099607 3` UTR CR34047 - chr3L_12_5095001 chr3L_5095001 RAL-707 887 chr3L 5104486 5104509 chr3L 5124620 5124643 10 20134 1.5 3.0 2.2 3.1 20157 chr3L 5104486 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124643 intergenic not near genes chr3L_10_5110001 chr3L_5110001 RAL-707 888 chr3L 5130929 5130944 chr3L 5131032 5131047 4 103 4.0 0.5 2.2 1.2 118 chr3L 5130929 intergenic not near genes chr3L 5130988 intergenic not near genes chr3L 5131047 intergenic CG15212 + chr3L_4_5130001 chr3L_5130001 RAL-707 889 chr3L 5164638 5164670 chr3L 5164714 5164746 12 76 3.0 2.0 2.5 3.4 108 chr3L 5164638 intron shep - chr3L 5164692 intron shep - chr3L 5164746 intron shep - chr3L_12_5160001 chr3L_5160001 RAL-707 890 chr3L 5171775 5171803 chr3L 5172089 5172117 9 314 1.5 4.5 3.0 2.2 342 chr3L 5171775 intron shep - chr3L 5171946 intron shep - chr3L 5172117 intron shep - chr3L_9_5170001 chr3L_5170001 RAL-707 891 chr3L 5212239 5212267 chr3L 5212322 5212350 9 82 3.0 2.5 2.8 2.4 111 chr3L 5212239 intron shep - chr3L 5212294 intron shep - chr3L 5212350 intron shep - chr3L_9_5210001 chr3L_5210001 RAL-707 892 chr3L 5213516 5213548 chr3L 5213593 5213623 6 77 2.0 1.0 1.5 2.4 107 chr3L 5213516 intron shep - chr3L 5213570 intron shep - chr3L 5213623 intron shep - chr3L_6_5210001 chr3L_5210001 RAL-707 893 chr3L 5223418 5223448 chr3L 5223500 5223526 5 78 0.5 1.5 1.0 2.5 108 chr3L 5223418 intron shep - chr3L 5223472 intron shep - chr3L 5223526 intron shep - chr3L_5_5220001 chr3L_5220001 RAL-707 894 chr3L 5257631 5257657 chr3L 5257919 5257944 7 288 3.5 1.0 2.2 2.2 313 chr3L 5257631 intron shep - chr3L 5257788 intron shep - chr3L 5257944 intron shep - chr3L_7_5255001 chr3L_5255001 RAL-707 895 chr3L 5383079 5383103 chr3L 5383180 5383204 8 101 4.5 3.0 3.8 1.7 125 chr3L 5383079 intergenic Ir64a - chr3L 5383142 intergenic Ir64a - chr3L 5383204 intergenic Ir64a - chr3L_8_5380001 chr3L_5380001 RAL-707 896 chr3L 5384318 5384344 chr3L 5384398 5384422 6 79 1.0 4.0 2.5 1.7 104 chr3L 5384318 intergenic not near genes chr3L 5384370 intergenic not near genes chr3L 5384422 intergenic not near genes chr3L_6_5380001 chr3L_5380001 RAL-707 897 chr3L 5387670 5387695 chr3L 5387927 5387952 7 256 0.5 4.5 2.5 2.0 282 chr3L 5387670 intergenic not near genes chr3L 5387811 intergenic not near genes chr3L 5387952 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-707 898 chr3L 5537723 5537744 chr3L 5538065 5538085 jockey 4 340 1.5 2.5 2.0 1.3 362 chr3L 5537723 intergenic not near genes chr3L 5537904 intergenic not near genes chr3L 5538085 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-707 899 chr3L 5654851 5654882 chr3L 5654943 5654981 8 98 1.5 0.0 0.8 4.4 130 chr3L 5654851 5` UTR lin-28 + chr3L 5654916 5` UTR lin-28 + chr3L 5654981 exon lin-28 + chr3L_8_5650001 chr3L_5650001 RAL-707 900 chr3L 5855570 5855572 chr3L 22908066 22908067 13 17052496 4.0 16.0 10.0 1.2 17052497 chr3L 5855570 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_13_14380001 chr3L_14380001 RAL-707 901 chr3L 5926316 5926351 chr3L 5926506 5926540 BS 14 189 1.5 4.5 3.0 3.5 224 chr3L 5926316 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_14_5925001 chr3L_5925001 RAL-707 902 chr3L 6001683 6001693 chr3L 6004383 6004393 jockey 4 2700 2.0 0.5 1.2 1.8 2710 chr3L 6001683 intron PVRAP + chr3L 6003038 intron PVRAP + chr3L 6004393 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-707 903 chr3L 6040377 6040394 chr3L 6042733 6042750 Doc 5 2356 2.0 3.0 2.5 1.4 2373 chr3L 6040377 intergenic Jon65Aiv + chr3L 6041564 intergenic not near genes chr3L 6042750 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-707 904 chr3L 6052652 6052665 chr3L 6052737 6052750 5 84 6.5 13.5 10.0 0.5 98 chr3L 6052652 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-707 905 chr3L 6137597 6137602 chr3L 6137702 6137707 4 105 2.0 2.5 2.2 1.2 110 chr3L 6137597 3` UTR Lcp65Ae - chr3L 6137652 3` UTR Lcp65Ae - chr3L 6137707 3` UTR Lcp65Ae - chr3L_4_6135001 chr3L_6135001 RAL-707 906 chr3L 6185603 6185631 chr3L 6185681 6185709 7 78 2.5 3.0 2.8 1.8 106 chr3L 6185603 exon CG43293 + chr3L 6185656 intron CG43293 + chr3L 6185709 exon CG43293 + chr3L_7_6185001 chr3L_6185001 RAL-707 907 chr3L 6220914 6220948 chr3L 6230066 6230100 roo 13 9152 3.0 5.5 4.2 2.5 9186 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-707 908 chr3L 6231168 6231372 chr3L 6231249 6231458 10 84 1.0 1.0 1.0 5.0 290 chr3L 6231168 intergenic not near genes chr3L 6231313 intergenic CG13299 - chr3L 6231458 intergenic CG13299 - chr3L_10_6230001 chr3L_6230001 RAL-707 909 chr3L 6279971 6279993 chr3L 6280096 6280119 9 126 2.5 3.5 3.0 2.2 148 chr3L 6279971 intergenic not near genes chr3L 6280045 intergenic not near genes chr3L 6280119 intergenic not near genes chr3L_9_6280001 chr3L_6280001 RAL-707 910 chr3L 6335010 6335036 chr3L 6335481 6335507 297 6 470 1.5 4.0 2.8 1.6 497 chr3L 6335010 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335507 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-707 911 chr3L 6405673 6405690 chr3L 6432137 6432154 roo 4 26463 0.0 2.0 1.0 2.0 26481 chr3L 6405673 intron CG42747 + chr3L 6418914 intron CG42747 + chr3L 6432154 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-707 912 chr3L 6512265 6512293 chr3L 6512350 6512379 8 86 2.5 0.5 1.5 3.2 114 chr3L 6512265 intron sfl + chr3L 6512322 intron sfl + chr3L 6512379 intron sfl + chr3L_8_6510001 chr3L_6510001 RAL-707 913 chr3L 6557432 6557459 chr3L 6557838 6557865 7 406 3.0 2.0 2.5 2.0 433 chr3L 6557432 intron CG18769 + chr3L 6557648 intron CG18769 + chr3L 6557865 intron CG18769 + chr3L_7_6555001 chr3L_6555001 RAL-707 914 chr3L 6604289 6604296 chr3L 6604366 6604373 5 77 0.0 5.0 2.5 1.4 84 chr3L 6604289 intron CG8368 + chr3L 6604331 intron CG8368 + chr3L 6604373 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-707 915 chr3L 6652079 6652109 chr3L 6652162 6652192 10 83 2.0 4.0 3.0 2.5 113 chr3L 6652079 intergenic not near genes chr3L 6652136 intergenic not near genes chr3L 6652192 intergenic not near genes chr3L_10_6650001 chr3L_6650001 RAL-707 916 chr3L 6781120 6781155 chr3L 6783133 6783168 Doc 8 2013 2.0 2.0 2.0 2.7 2048 chr3L 6781120 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783168 intergenic not near genes chr3L_8_6780001 chr3L_6780001 RAL-707 917 chr3L 6855932 6855950 chr3L 6860716 6860733 Doc 4 4784 0.5 2.0 1.2 1.8 4801 chr3L 6855932 intergenic not near genes chr3L 6858332 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-707 918 chr3L 6887517 6887551 chr3L 6895009 6895043 roo 5 7492 2.5 1.5 2.0 1.7 7526 chr3L 6887517 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-707 919 chr3L 6942062 6942086 chr3L 6942161 6942180 5 98 4.0 3.5 3.8 1.0 118 chr3L 6942062 intergenic not near genes chr3L 6942121 intergenic not near genes chr3L 6942180 intergenic not near genes chr3L_5_6940001 chr3L_6940001 RAL-707 920 chr3L 7033170 7033205 chr3L 7033250 7033285 9 80 1.5 2.0 1.8 3.2 115 chr3L 7033170 intron Mp + chr3L 7033228 intron Mp + chr3L 7033285 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-707 921 chr3L 7090022 7090059 chr3L 7090103 7090140 9 81 2.0 1.0 1.5 3.6 118 chr3L 7090022 intergenic not near genes chr3L 7090081 intergenic not near genes chr3L 7090140 intergenic not near genes chr3L_9_7090001 chr3L_7090001 RAL-707 922 chr3L 7358297 7358326 chr3L 7359580 7359610 13 1284 13.0 20.5 16.8 0.7 1313 chr3L 7358297 exon pst - chr3L 7358954 exon pst - chr3L 7359610 intron pst - chr3L_13_7355001 chr3L_7355001 RAL-707 923 chr3L 7377315 7377347 chr3L 7380420 7380452 297 5 3105 3.0 2.5 2.8 1.3 3137 chr3L 7377315 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380452 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-707 924 chr3L 7450687 7450707 chr3L 7450770 7450790 7 83 1.5 0.0 0.8 3.9 103 chr3L 7450687 intron CG42458 + chr3L 7450738 intron CG42458 + chr3L 7450790 intron CG42458 + chr3L_7_7450001 chr3L_7450001 RAL-707 925 chr3L 7498766 7498790 chr3L 7503542 7503567 F-element 7 4776 1.0 3.0 2.0 2.3 4801 chr3L 7498766 5` UTR CG8539 - chr3L 7501166 intergenic not near genes chr3L 7503567 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-707 926 chr3L 7540096 7540112 chr3L 7540207 7540223 6 111 1.0 3.5 2.2 1.9 127 chr3L 7540096 intergenic lqf +,CG32374 -,CG16998 - chr3L 7540160 intergenic CG32374 -,lqf +,CG16998 - chr3L 7540223 intergenic CG32374 -,lqf +,CG16998 - chr3L_6_7540001 chr3L_7540001 RAL-707 927 chr3L 7556621 7556650 chr3L 7556755 7556784 7 134 2.5 2.5 2.5 2.0 163 chr3L 7556621 exon CG14837 - chr3L 7556702 exon CG14837 - chr3L 7556784 exon CG14837 - chr3L_7_7555001 chr3L_7555001 RAL-707 928 chr3L 7591158 7591178 chr3L 7591244 7591267 8 90 3.0 3.5 3.2 1.9 109 chr3L 7591158 intergenic CG7716 - chr3L 7591212 intergenic CG7716 - chr3L 7591267 intergenic CG7716 - chr3L_8_7590001 chr3L_7590001 RAL-707 929 chr3L 7591895 7591922 chr3L 7591972 7591999 9 77 2.0 2.5 2.2 2.8 104 chr3L 7591895 intergenic not near genes chr3L 7591947 intergenic not near genes chr3L 7591999 intergenic not near genes chr3L_9_7590001 chr3L_7590001 RAL-707 930 chr3L 7665867 7665897 chr3L 7665985 7666017 10 120 2.5 1.5 2.0 3.3 150 chr3L 7665867 intron,intron,exon CG32373 +,Ank2 -,CG44195 - chr3L 7665942 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7666017 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_10_7665001 chr3L_7665001 RAL-707 931 chr3L 7749470 7749472 chr3L 11777678 11777678 6 4028208 12.0 21.5 16.8 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-707 932 chr3L 7752155 7752178 chr3L 7752262 7752283 4 106 3.5 4.0 3.8 0.8 128 chr3L 7752155 intron CG32373 + chr3L 7752219 intron CG32373 + chr3L 7752283 intron CG32373 + chr3L_4_7750001 chr3L_7750001 RAL-707 933 chr3L 7793717 7793733 chr3L 7800767 7800785 297 4 7052 3.0 4.0 3.5 0.9 7068 chr3L 7793717 intron CG32369 - chr3L 7797251 intron CG32369 - chr3L 7800785 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-707 934 chr3L 7845387 7845402 chr3L 7845470 7845485 4 83 1.0 0.0 0.5 2.7 98 chr3L 7845387 intron Pdp1 - chr3L 7845436 intron Pdp1 - chr3L 7845485 intron Pdp1 - chr3L_4_7845001 chr3L_7845001 RAL-707 935 chr3L 7875041 7875053 chr3L 7876871 7876883 5 1830 1.5 6.5 4.0 1.0 1842 chr3L 7875041 intron CG32365 + chr3L 7875962 intron CG32365 + chr3L 7876883 intron CG32365 + chr3L_5_7875001 chr3L_7875001 RAL-707 936 chr3L 7886515 7886546 chr3L 7889033 7889064 Stalker4 13 2518 2.0 3.5 2.8 3.4 2549 chr3L 7886515 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-707 937 chr3L 7916001 7916121 chr3L 7916111 7916280 9 137 0.0 0.0 0.0 9.0 279 chr3L 7916001 intergenic CG32368 + chr3L 7916140 intergenic CG32368 + chr3L 7916280 intergenic syd -,CG32368 + chr3L_9_7915001 chr3L_7915001 RAL-707 938 chr3L 7916830 7916862 chr3L 7926001 7926033 roo 9 9171 0.0 0.5 0.2 7.5 9203 chr3L 7916830 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926033 3` UTR syd - chr3L_9_7920001 chr3L_7920001 RAL-707 939 chr3L 7985375 7985397 chr3L 7987702 7987725 NOF 5 2328 0.5 3.5 2.0 1.7 2350 chr3L 7985375 intron nmo + chr3L 7986550 intron nmo + chr3L 7987725 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-707 940 chr3L 8026601 8026628 chr3L 8026679 8026706 6 78 2.5 0.5 1.5 2.4 105 chr3L 8026601 intron nmo + chr3L 8026654 intron nmo + chr3L 8026706 intron nmo + chr3L_6_8025001 chr3L_8025001 RAL-707 941 chr3L 8248312 8248339 chr3L 8248400 8248429 7 89 1.5 2.5 2.0 2.3 117 chr3L 8248312 intron Dscam4 + chr3L 8248370 intron Dscam4 + chr3L 8248429 intron Dscam4 + chr3L_7_8245001 chr3L_8245001 RAL-707 942 chr3L 8317591 8317596 chr3L 22908066 22908067 8 14590471 2.0 16.0 9.0 0.8 14590476 chr3L 8317591 intergenic not near genes chr3L 15612829 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_8_15610001 chr3L_15610001 RAL-707 943 chr3L 8456482 8456489 chr3L 8456575 8456590 4 95 6.5 8.0 7.2 0.5 108 chr3L 8456482 intron Gug + chr3L 8456536 intron Gug + chr3L 8456590 intron Gug + chr3L_4_8455001 chr3L_8455001 RAL-707 944 chr3L 8481783 8481806 chr3L 8490942 8490965 roo 4 9159 2.0 8.0 5.0 0.7 9182 chr3L 8481783 intron CG43163 - chr3L 8486374 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-707 945 chr3L 8498295 8498327 chr3L 8505762 8505794 blood 6 7467 1.0 3.0 2.0 2.0 7499 chr3L 8498295 intron CG43163 - chr3L 8502044 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-707 946 chr3L 8579860 8579882 chr3L 8579932 8579962 6 79 4.5 3.5 4.0 1.2 102 chr3L 8579860 intron CG43078 + chr3L 8579911 intron CG43078 + chr3L 8579962 intron CG43078 + chr3L_6_8575001 chr3L_8575001 RAL-707 947 chr3L 8849211 8849237 chr3L 8849291 8849316 5 80 1.5 0.5 1.0 2.5 105 chr3L 8849211 intron dally + chr3L 8849264 intron dally + chr3L 8849316 intron dally + chr3L_5_8845001 chr3L_8845001 RAL-707 948 chr3L 9076926 9076960 chr3L 9084486 9084520 412 11 7560 3.5 1.5 2.5 3.1 7594 chr3L 9076926 exon Tequila + chr3L 9080723 intron Tequila + chr3L 9084520 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-707 949 chr3L 9130557 9130570 chr3L 9134318 9134330 412 9 3761 6.0 2.5 4.2 1.7 3773 chr3L 9130557 intergenic bol - chr3L 9132444 intergenic not near genes chr3L 9134330 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 RAL-707 950 chr3L 9164695 9164725 chr3L 9166162 9166192 hobo 7 1467 1.0 1.5 1.2 3.2 1497 chr3L 9164695 intron Rdl - chr3L 9165444 intron Rdl - chr3L 9166192 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-707 951 chr3L 9179702 9179726 chr3L 9179829 9179853 7 126 3.5 3.5 3.5 1.6 151 chr3L 9179702 intron Rdl - chr3L 9179778 intron Rdl - chr3L 9179853 intron Rdl - chr3L_7_9175001 chr3L_9175001 RAL-707 952 chr3L 9219244 9219270 chr3L 9219916 9219942 jockey 7 671 5.5 2.5 4.0 1.4 698 chr3L 9219244 intergenic not near genes chr3L 9219593 intergenic not near genes chr3L 9219942 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-707 953 chr3L 9270617 9270649 chr3L 9278372 9278402 roo 16 7754 3.0 0.5 1.8 5.7 7785 chr3L 9270617 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278402 exon GluRIB + chr3L_16_9270001 chr3L_9270001 RAL-707 954 chr3L 9443512 9443543 chr3L 9445299 9445330 S-element 9 1787 3.0 1.5 2.2 2.8 1818 chr3L 9443512 intron CG33926 + chr3L 9444421 intron CG33926 + chr3L 9445330 intron CG33926 + chr3L_9_9440001 chr3L_9440001 RAL-707 955 chr3L 9492805 9492830 chr3L 9494127 9494152 10 1322 11.0 24.0 17.5 0.5 1347 chr3L 9492805 intergenic not near genes chr3L 9493478 intergenic not near genes chr3L 9494152 intergenic path - chr3L_10_9490001 chr3L_9490001 RAL-707 956 chr3L 9491855 9491884 chr3L 9495468 9495497 11 3613 27.0 24.5 25.8 0.4 3642 chr3L 9491855 5` UTR CG32037 - chr3L 9493676 intergenic not near genes chr3L 9495497 3` UTR path - chr3L_11_9490001 chr3L_9490001 RAL-707 957 chr3L 9498202 9498230 chr3L 9498279 9498307 5 77 2.5 1.0 1.8 1.8 105 chr3L 9498202 intron path - chr3L 9498254 intron path - chr3L 9498307 intron path - chr3L_5_9495001 chr3L_9495001 RAL-707 958 chr3L 9513441 9513475 chr3L 9513528 9513561 8 87 2.0 1.0 1.5 3.2 120 chr3L 9513441 intergenic CG33702 - chr3L 9513501 intergenic CG33702 - chr3L 9513561 intergenic CG33702 - chr3L_8_9510001 chr3L_9510001 RAL-707 959 chr3L 9526484 9526514 chr3L 9528164 9528194 Doc 7 1680 1.0 2.5 1.8 2.5 1710 chr3L 9526484 intergenic not near genes chr3L 9527339 intergenic not near genes chr3L 9528194 intergenic not near genes chr3L_7_9525001 chr3L_9525001 RAL-707 960 chr3L 9533752 9533782 chr3L 9541311 9541342 412 7 7559 1.0 5.0 3.0 1.8 7590 chr3L 9533752 intergenic not near genes chr3L 9537547 intergenic not near genes chr3L 9541342 intergenic not near genes chr3L_7_9535001 chr3L_9535001 RAL-707 961 chr3L 9571901 9571932 chr3L 9572249 9572280 jockey 10 348 3.0 2.5 2.8 2.6 379 chr3L 9571901 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572280 intron CG42673 + chr3L_10_9570001 chr3L_9570001 RAL-707 962 chr3L 9575907 9575929 chr3L 9580985 9581006 jockey 8 5078 4.0 2.5 3.2 1.9 5099 chr3L 9575907 intron CG42673 + chr3L 9578456 intron CG42673 + chr3L 9581006 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-707 963 chr3L 9594228 9594256 chr3L 9594309 9594337 5 81 1.5 3.5 2.5 1.4 109 chr3L 9594228 intron CG42673 + chr3L 9594282 intron CG42673 + chr3L 9594337 intron CG42673 + chr3L_5_9590001 chr3L_9590001 RAL-707 964 chr3L 9691786 9691818 chr3L 9691875 9691907 8 89 15.0 16.0 15.5 0.5 121 chr3L 9691786 intron CG6767 - chr3L 9691846 intron CG6767 - chr3L 9691907 intron CG6767 - chr3L_8_9690001 chr3L_9690001 RAL-707 965 chr3L 9710117 9710145 chr3L 9710203 9710231 16 86 2.0 3.0 2.5 4.6 114 chr3L 9710117 3` UTR CG16711 + chr3L 9710174 3` UTR CG16711 + chr3L 9710231 3` UTR CG16711 + chr3L_16_9710001 chr3L_9710001 RAL-707 966 chr3L 9775383 9775397 chr3L 9775743 9775756 6 360 0.0 5.0 2.5 1.7 373 chr3L 9775383 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775756 intron CG8177 + chr3L_6_9775001 chr3L_9775001 RAL-707 967 chr3L 9818075 9818107 chr3L 9818189 9818221 8 114 2.0 2.0 2.0 2.7 146 chr3L 9818075 intron CG43897 + chr3L 9818148 intron CG43897 + chr3L 9818221 intron CG43897 + chr3L_8_9815001 chr3L_9815001 RAL-707 968 chr3L 9831708 9831738 chr3L 9831789 9831819 4 81 0.0 1.5 0.8 2.2 111 chr3L 9831708 intron CG43897 + chr3L 9831764 intron CG43897 + chr3L 9831819 intron CG43897 + chr3L_4_9830001 chr3L_9830001 RAL-707 969 chr3L 9871193 9871212 chr3L 9871289 9871308 9 96 3.0 2.0 2.5 2.6 115 chr3L 9871193 intergenic not near genes chr3L 9871250 intergenic not near genes chr3L 9871308 intergenic not near genes chr3L_9_9870001 chr3L_9870001 RAL-707 970 chr3L 9976957 9976967 chr3L 9977037 9977046 4 80 0.0 2.0 1.0 2.0 89 chr3L 9976957 intron dpr6 + chr3L 9977002 intron dpr6 + chr3L 9977046 intron dpr6 + chr3L_4_9975001 chr3L_9975001 RAL-707 971 chr3L 10003151 10003179 chr3L 10003248 10003276 4 97 3.0 4.0 3.5 0.9 125 chr3L 10003151 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-707 972 chr3L 10006729 10006760 chr3L 10006888 10006919 13 159 2.5 4.5 3.5 2.9 190 chr3L 10006729 intron dpr6 + chr3L 10006824 intron dpr6 + chr3L 10006919 intron dpr6 + chr3L_13_10005001 chr3L_10005001 RAL-707 973 chr3L 10161797 10161828 chr3L 10161928 10161959 12 131 2.5 2.0 2.2 3.8 162 chr3L 10161797 intron dpr10 - chr3L 10161878 intron dpr10 - chr3L 10161959 intron dpr10 - chr3L_12_10160001 chr3L_10160001 RAL-707 974 chr3L 10165661 10165673 chr3L 10165737 10165749 4 76 2.5 0.0 1.2 1.8 88 chr3L 10165661 intron dpr10 - chr3L 10165705 intron dpr10 - chr3L 10165749 intron dpr10 - chr3L_4_10165001 chr3L_10165001 RAL-707 975 chr3L 10182253 10182283 chr3L 10182340 10182369 8 86 2.0 2.5 2.2 2.5 116 chr3L 10182253 exon dpr10 - chr3L 10182311 5` UTR dpr10 - chr3L 10182369 5` UTR dpr10 - chr3L_8_10180001 chr3L_10180001 RAL-707 976 chr3L 10214729 10214824 chr3L 10214816 10214926 5 90 0.0 0.0 0.0 5.0 197 chr3L 10214729 intergenic not near genes chr3L 10214828 intergenic not near genes chr3L 10214926 intergenic not near genes chr3L_5_10210001 chr3L_10210001 RAL-707 977 chr3L 10222747 10222755 chr3L 10222827 10222835 4 80 0.0 3.0 1.5 1.6 88 chr3L 10222747 intron scramb1 - chr3L 10222791 intron scramb1 - chr3L 10222835 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-707 978 chr3L 10308764 10308776 chr3L 10308840 10308853 6 77 2.0 4.0 3.0 1.5 89 chr3L 10308764 intergenic not near genes chr3L 10308808 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-707 979 chr3L 10381714 10381742 chr3L 10381797 10381827 4 83 1.0 1.5 1.2 1.8 113 chr3L 10381714 intergenic not near genes chr3L 10381770 intergenic not near genes chr3L 10381827 intergenic not near genes chr3L_4_10380001 chr3L_10380001 RAL-707 980 chr3L 10414941 10414975 chr3L 10417313 10417347 Doc 14 2372 1.5 3.5 2.5 4.0 2406 chr3L 10414941 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-707 981 chr3L 10417575 10417597 chr3L 10417651 10417674 6 77 4.5 3.5 4.0 1.2 99 chr3L 10417575 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417674 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-707 982 chr3L 10419096 10419117 chr3L 10419173 10419194 6 77 3.0 1.5 2.2 1.9 98 chr3L 10419096 intergenic not near genes chr3L 10419145 intergenic not near genes chr3L 10419194 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-707 983 chr3L 10469929 10469966 chr3L 10470005 10470041 10 76 1.5 5.0 3.2 2.4 112 chr3L 10469929 intergenic not near genes chr3L 10469985 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_10_10465001 chr3L_10465001 RAL-707 984 chr3L 10601206 10601230 chr3L 10601299 10601321 13 93 2.0 3.0 2.5 3.7 115 chr3L 10601206 intergenic not near genes chr3L 10601264 intergenic not near genes chr3L 10601321 intergenic not near genes chr3L_13_10600001 chr3L_10600001 RAL-707 985 chr3L 10621848 10621872 chr3L 10621934 10621956 4 86 1.0 0.5 0.8 2.2 108 chr3L 10621848 intergenic not near genes chr3L 10621902 intergenic not near genes chr3L 10621956 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-707 986 chr3L 10678734 10678754 chr3L 10678817 10678837 4 83 1.5 3.5 2.5 1.1 103 chr3L 10678734 intron simj + chr3L 10678786 intron simj + chr3L 10678837 intron simj + chr3L_4_10675001 chr3L_10675001 RAL-707 987 chr3L 10958211 10958233 chr3L 10958292 10958315 5 82 3.5 0.5 2.0 1.7 104 chr3L 10958211 intergenic not near genes chr3L 10958263 intergenic not near genes chr3L 10958315 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-707 988 chr3L 11083501 11083533 chr3L 11083599 11083631 9 98 2.5 2.5 2.5 2.6 130 chr3L 11083501 intron JIL-1 - chr3L 11083566 intron JIL-1 - chr3L 11083631 intron JIL-1 - chr3L_9_11080001 chr3L_11080001 RAL-707 989 chr3L 11085676 11085704 chr3L 11085759 11085787 8 83 2.0 5.0 3.5 1.8 111 chr3L 11085676 exon JIL-1 - chr3L 11085732 intron JIL-1 - chr3L 11085787 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-707 990 chr3L 11087077 11087088 chr3L 11088863 11088874 S-element 4 1788 0.5 7.0 3.8 0.8 1797 chr3L 11087077 intron JIL-1 - chr3L 11087976 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-707 991 chr3L 11105291 11105322 chr3L 11107002 11107033 X-element 10 1711 2.5 1.5 2.0 3.3 1742 chr3L 11105291 intergenic not near genes chr3L 11106162 intergenic not near genes chr3L 11107033 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-707 992 chr3L 11121589 11121615 chr3L 11122996 11123030 8 1408 31.0 33.0 32.0 0.2 1441 chr3L 11121589 exon mRpL2 + chr3L 11122310 exon Ufd1-like - chr3L 11123030 exon Ufd1-like - chr3L_8_11120001 chr3L_11120001 RAL-707 993 chr3L 11135771 11135803 chr3L 11135856 11135888 7 85 0.0 2.0 1.0 3.5 117 chr3L 11135771 intergenic CG32082 +,CG14143 + chr3L 11135830 intergenic CG32082 +,CG14143 + chr3L 11135888 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-707 994 chr3L 11187710 11187737 chr3L 11187790 11187818 6 81 0.0 1.0 0.5 4.0 108 chr3L 11187710 intron GlcAT-P - chr3L 11187764 intron GlcAT-P - chr3L 11187818 intron GlcAT-P - chr3L_6_11185001 chr3L_11185001 RAL-707 995 chr3L 11264462 11264497 chr3L 11271414 11271447 17.6 7 6952 2.5 1.5 2.0 2.3 6985 chr3L 11264462 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271447 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-707 996 chr3L 11277463 11277476 chr3L 11278457 11278471 Rt1a 9 995 0.0 3.0 1.5 3.6 1008 chr3L 11277463 intergenic not near genes chr3L 11277967 intergenic not near genes chr3L 11278471 intergenic not near genes chr3L_9_11275001 chr3L_11275001 RAL-707 997 chr3L 11279722 11279744 chr3L 11279802 11279825 10 79 2.0 4.0 3.0 2.5 103 chr3L 11279722 intergenic not near genes chr3L 11279774 intergenic not near genes chr3L 11279825 intergenic not near genes chr3L_10_11275001 chr3L_11275001 RAL-707 998 chr3L 11305796 11305808 chr3L 22908066 22908067 7 11602263 4.0 16.0 10.0 0.6 11602271 chr3L 11305796 intergenic not near genes chr3L 17106932 intron Rbp6 - chr3L 22908067 intergenic not near genes chr3L_7_17105001 chr3L_17105001 RAL-707 999 chr3L 11340524 11340555 chr3L 11340647 11340679 4 124 2.5 4.5 3.5 0.9 155 chr3L 11340524 intergenic not near genes chr3L 11340602 intergenic not near genes chr3L 11340679 intergenic not near genes chr3L_4_11340001 chr3L_11340001 RAL-707 1000 chr3L 11383978 11383995 chr3L 11384057 11384073 5 79 3.5 3.5 3.5 1.1 95 chr3L 11383978 3` UTR CR42755 - chr3L 11384026 3` UTR CR42755 - chr3L 11384073 3` UTR CR42755 - chr3L_5_11380001 chr3L_11380001 RAL-707 1001 chr3L 11550781 11550782 chr3L 22908066 22908066 4 11357285 1.0 16.0 8.5 0.4 11357285 chr3L 11550781 intron Mob2 - chr3L 17229424 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_4_17225001 chr3L_17225001 RAL-707 1002 chr3L 11564790 11564811 chr3L 11572414 11572436 412 5 7625 2.5 3.5 3.0 1.2 7646 chr3L 11564790 exon CG33267 + chr3L 11568613 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-707 1003 chr3L 11579558 11579575 chr3L 11579664 11579680 5 106 1.5 2.5 2.0 1.7 122 chr3L 11579558 intergenic CG43390 - chr3L 11579619 intergenic CG43390 - chr3L 11579680 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-707 1004 chr3L 11723082 11723115 chr3L 11727877 11727910 Doc 12 4795 0.5 4.5 2.5 3.4 4828 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-707 1005 chr3L 11744011 11744030 chr3L 11744119 11744138 9 108 6.0 0.0 3.0 2.2 127 chr3L 11744011 exon CG6024 - chr3L 11744074 intron CG6024 - chr3L 11744138 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-707 1006 chr3L 11771004 11771015 chr3L 11771090 11771101 5 86 0.0 5.0 2.5 1.4 97 chr3L 11771004 exon Muc68D - chr3L 11771052 exon Muc68D - chr3L 11771101 exon Muc68D - chr3L_5_11770001 chr3L_11770001 RAL-707 1007 chr3L 11864552 11864575 chr3L 11865847 11865870 pogo 8 1295 7.0 3.0 5.0 1.3 1318 chr3L 11864552 intron CG44837 - chr3L 11865211 intron CG44837 - chr3L 11865870 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-707 1008 chr3L 11887262 11887289 chr3L 11887359 11887391 5 98 0.0 0.5 0.2 4.2 129 chr3L 11887262 intron,3` UTR CG44837 -,CG5897 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887391 intron,3` UTR CG44837 -,CG5897 - chr3L_5_11885001 chr3L_11885001 RAL-707 1009 chr3L 11906426 11906451 chr3L 11906500 11906527 8 75 1.0 0.0 0.5 5.3 101 chr3L 11906426 intron CG44837 - chr3L 11906476 intron CG44837 - chr3L 11906527 intron CG44837 - chr3L_8_11905001 chr3L_11905001 RAL-707 1010 chr3L 11915976 11915985 chr3L 11916058 11916067 5 82 2.5 0.0 1.2 2.3 91 chr3L 11915976 intron CG44837 - chr3L 11916022 intron CG44837 - chr3L 11916067 intron CG44837 - chr3L_5_11915001 chr3L_11915001 RAL-707 1011 chr3L 11943495 11943519 chr3L 11943596 11943620 5 101 3.0 2.5 2.8 1.3 125 chr3L 11943495 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943620 intergenic CG5883 -,Rpt4R + chr3L_5_11940001 chr3L_11940001 RAL-707 1012 chr3L 11984569 11984586 chr3L 11984660 11984676 5 91 3.5 0.0 1.8 1.8 107 chr3L 11984569 intergenic CG6938 + chr3L 11984622 intergenic CG6938 + chr3L 11984676 intergenic CG6938 + chr3L_5_11980001 chr3L_11980001 RAL-707 1013 chr3L 12052703 12052730 chr3L 12052792 12052819 4 89 4.0 2.0 3.0 1.0 116 chr3L 12052703 intron rols - chr3L 12052761 intron rols - chr3L 12052819 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-707 1014 chr3L 12075429 12075449 chr3L 12075518 12075538 8 89 3.0 0.0 1.5 3.2 109 chr3L 12075429 intron Sema-5c - chr3L 12075484 intron Sema-5c - chr3L 12075538 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-707 1015 chr3L 12082209 12082229 chr3L 12082438 12082458 11 229 0.5 2.0 1.2 5.0 249 chr3L 12082209 intergenic Sema-5c - chr3L 12082334 intergenic not near genes chr3L 12082458 intergenic not near genes chr3L_11_12080001 chr3L_12080001 RAL-707 1016 chr3L 12099999 12100027 chr3L 12100082 12100110 9 83 1.5 1.5 1.5 3.6 111 chr3L 12099999 intergenic not near genes chr3L 12100054 intergenic not near genes chr3L 12100110 intergenic not near genes chr3L_9_12100001 chr3L_12100001 RAL-707 1017 chr3L 12206052 12206077 chr3L 12206142 12206166 10 89 2.0 3.0 2.5 2.9 114 chr3L 12206052 intergenic CG5626 -,app - chr3L 12206109 intergenic CG5626 -,app - chr3L 12206166 intergenic app -,CG5626 - chr3L_10_12205001 chr3L_12205001 RAL-707 1018 chr3L 12231376 12231405 chr3L 12231676 12231704 6 300 22.5 15.5 19.0 0.3 328 chr3L 12231376 intron app - chr3L 12231540 intron app - chr3L 12231704 intron app - chr3L_6_12230001 chr3L_12230001 RAL-707 1019 chr3L 12248982 12249014 chr3L 12250418 12250450 8 1436 19.5 20.0 19.8 0.4 1468 chr3L 12248982 intron app - chr3L 12249716 intron app - chr3L 12250450 intron app - chr3L_8_12245001 chr3L_12245001 RAL-707 1020 chr3L 12288014 12288044 chr3L 12288101 12288133 9 88 3.5 5.5 4.5 1.6 119 chr3L 12288014 intergenic not near genes chr3L 12288074 intergenic not near genes chr3L 12288133 intergenic not near genes chr3L_9_12285001 chr3L_12285001 RAL-707 1021 chr3L 12300847 12300882 chr3L 12300986 12301021 10 139 2.5 2.5 2.5 2.9 174 chr3L 12300847 intergenic CR44550 + chr3L 12300934 intergenic CR44550 + chr3L 12301021 5` UTR CR44550 + chr3L_10_12300001 chr3L_12300001 RAL-707 1022 chr3L 12304102 12304118 chr3L 12304177 12304194 6 76 1.0 5.0 3.0 1.5 92 chr3L 12304102 intergenic not near genes chr3L 12304148 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-707 1023 chr3L 12312488 12312505 chr3L 12312565 12312583 6 78 4.0 4.0 4.0 1.2 95 chr3L 12312488 intergenic not near genes chr3L 12312536 intergenic not near genes chr3L 12312583 intergenic not near genes chr3L_6_12310001 chr3L_12310001 RAL-707 1024 chr3L 12318637 12318662 chr3L 12318724 12318750 13 87 5.0 10.5 7.8 1.5 113 chr3L 12318637 intergenic not near genes chr3L 12318694 intergenic not near genes chr3L 12318750 intergenic not near genes chr3L_13_12315001 chr3L_12315001 RAL-707 1025 chr3L 12353928 12353952 chr3L 12354016 12354040 8 88 2.5 1.0 1.8 2.9 112 chr3L 12353928 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354040 intergenic not near genes chr3L_8_12350001 chr3L_12350001 RAL-707 1026 chr3L 12369540 12369568 chr3L 12369630 12369658 7 90 0.5 1.5 1.0 3.5 118 chr3L 12369540 intron Ncc69 - chr3L 12369599 intron Ncc69 - chr3L 12369658 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-707 1027 chr3L 12371095 12371111 chr3L 12371194 12371208 4 98 4.0 1.0 2.5 1.1 113 chr3L 12371095 intron Ncc69 - chr3L 12371152 intron Ncc69 - chr3L 12371208 intron Ncc69 - chr3L_4_12370001 chr3L_12370001 RAL-707 1028 chr3L 12390971 12390996 chr3L 12391071 12391096 6 100 5.0 3.5 4.2 1.2 125 chr3L 12390971 5` UTR Ncc69 - chr3L 12391034 5` UTR Ncc69 - chr3L 12391096 5` UTR Ncc69 - chr3L_6_12390001 chr3L_12390001 RAL-707 1029 chr3L 12412729 12412762 chr3L 12412814 12412847 10 85 4.0 3.5 3.8 2.1 118 chr3L 12412729 intron CG32103 - chr3L 12412788 intron CG32103 - chr3L 12412847 intron CG32103 - chr3L_10_12410001 chr3L_12410001 RAL-707 1030 chr3L 12446282 12446300 chr3L 12446360 12446378 5 77 1.5 1.5 1.5 2.0 96 chr3L 12446282 intergenic not near genes chr3L 12446330 intergenic not near genes chr3L 12446378 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-707 1031 chr3L 12578054 12578069 chr3L 12578142 12578157 4 88 0.0 0.5 0.2 3.3 103 chr3L 12578054 intergenic not near genes chr3L 12578106 intergenic not near genes chr3L 12578157 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-707 1032 chr3L 12578783 12578789 chr3L 22908066 22908067 5 10329280 11.0 16.0 13.5 0.3 10329284 chr3L 12578783 intergenic not near genes chr3L 17743425 intron Ccn + chr3L 22908067 intergenic not near genes chr3L_5_17740001 chr3L_17740001 RAL-707 1033 chr3L 12591632 12591640 chr3L 12591709 12591717 5 77 7.0 4.0 5.5 0.8 85 chr3L 12591632 intron ara + chr3L 12591674 intron ara + chr3L 12591717 intron ara + chr3L_5_12590001 chr3L_12590001 RAL-707 1034 chr3L 11777678 11777678 chr3L 12638619 12638621 5 860942 19.0 11.0 15.0 0.3 860943 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208150 intron app - chr3L 12638621 intron CR32111 + chr3L_5_12205001 chr3L_12205001 RAL-707 1035 chr3L 12647948 12647974 chr3L 12648024 12648050 7 76 1.0 0.5 0.8 3.9 102 chr3L 12647948 5` UTR CR32111 + chr3L 12647999 5` UTR CR32111 + chr3L 12648050 5` UTR CR32111 + chr3L_7_12645001 chr3L_12645001 RAL-707 1036 chr3L 12706642 12706652 chr3L 12706769 12706779 5 127 2.5 3.5 3.0 1.2 137 chr3L 12706642 intron mirr + chr3L 12706710 intron mirr + chr3L 12706779 intron mirr + chr3L_5_12705001 chr3L_12705001 RAL-707 1037 chr3L 12801994 12802007 chr3L 12802070 12802083 6 75 0.5 4.5 2.5 1.7 89 chr3L 12801994 intron Atg1 - chr3L 12802038 intron Atg1 - chr3L 12802083 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-707 1038 chr3L 12874937 12874957 chr3L 12877229 12877249 jockey 6 2292 1.0 2.5 1.8 2.1 2312 chr3L 12874937 intergenic not near genes chr3L 12876093 intergenic not near genes chr3L 12877249 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-707 1039 chr3L 12894801 12894818 chr3L 12894879 12894896 6 77 7.0 6.0 6.5 0.8 95 chr3L 12894801 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-707 1040 chr3L 12919277 12919292 chr3L 12924761 12924776 Rt1c 6 5484 3.5 1.5 2.5 1.7 5499 chr3L 12919277 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-707 1041 chr3L 12957800 12957815 chr3L 12962282 12962297 copia 6 4482 2.5 5.0 3.8 1.2 4497 chr3L 12957800 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962297 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-707 1042 chr3L 13008816 13008824 chr3L 13008975 13008983 5 159 1.5 8.5 5.0 0.8 167 chr3L 13008816 exon CG14117 + chr3L 13008900 intron CG14117 + chr3L 13008983 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-707 1043 chr3L 13069559 13069586 chr3L 13069638 13069665 9 79 1.5 0.0 0.8 5.0 106 chr3L 13069559 intergenic not near genes chr3L 13069612 intergenic not near genes chr3L 13069665 intergenic not near genes chr3L_9_13065001 chr3L_13065001 RAL-707 1044 chr3L 13113650 13113665 chr3L 13113851 13113866 6 201 3.0 4.5 3.8 1.2 216 chr3L 13113650 intergenic not near genes chr3L 13113758 intergenic not near genes chr3L 13113866 intergenic trn + chr3L_6_13110001 chr3L_13110001 RAL-707 1045 chr3L 13144128 13144147 chr3L 13144205 13144224 8 77 0.5 2.0 1.2 3.6 96 chr3L 13144128 intergenic not near genes chr3L 13144176 intergenic not near genes chr3L 13144224 intergenic not near genes chr3L_8_13140001 chr3L_13140001 RAL-707 1046 chr3L 13168109 13168142 chr3L 13168191 13168232 14 87 1.0 0.0 0.5 9.3 123 chr3L 13168109 intergenic not near genes chr3L 13168170 intergenic not near genes chr3L 13168232 intergenic not near genes chr3L_14_13165001 chr3L_13165001 RAL-707 1047 chr3L 13223235 13223242 chr3L 13223312 13223319 4 77 0.0 5.0 2.5 1.1 84 chr3L 13223235 intergenic not near genes chr3L 13223277 intergenic not near genes chr3L 13223319 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-707 1048 chr3L 13289348 13289361 chr3L 13289489 13289502 6 141 0.5 1.0 0.8 3.3 154 chr3L 13289348 intergenic not near genes chr3L 13289425 intergenic not near genes chr3L 13289502 intergenic not near genes chr3L_6_13285001 chr3L_13285001 RAL-707 1049 chr3L 13301258 13301277 chr3L 13301340 13301359 8 82 0.0 0.0 0.0 8.0 101 chr3L 13301258 intergenic SP + chr3L 13301308 intergenic SP + chr3L 13301359 intergenic SP + chr3L_8_13300001 chr3L_13300001 RAL-707 1050 chr3L 13400526 13400530 chr3L 13400602 13400606 4 76 1.5 1.0 1.2 1.8 80 chr3L 13400526 intron sens - chr3L 13400566 intron sens - chr3L 13400606 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-707 1051 chr3L 13452513 13452678 chr3L 13452648 13452766 9 119 0.0 0.0 0.0 9.0 253 chr3L 13452513 intron CG10738 + chr3L 13452640 intron CG10738 + chr3L 13452766 intron CG10738 + chr3L_9_13450001 chr3L_13450001 RAL-707 1052 chr3L 13498657 13498683 chr3L 13498738 13498763 7 81 2.5 0.0 1.2 3.2 106 chr3L 13498657 intron Tgi + chr3L 13498710 intron Tgi + chr3L 13498763 intron Tgi + chr3L_7_13495001 chr3L_13495001 RAL-707 1053 chr3L 13525155 13525185 chr3L 13532951 13532981 roo 9 7795 5.5 2.5 4.0 1.8 7826 chr3L 13525155 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-707 1054 chr3L 13535919 13535937 chr3L 13535992 13536013 5 75 2.0 3.0 2.5 1.4 94 chr3L 13535919 intergenic not near genes chr3L 13535966 intergenic not near genes chr3L 13536013 intergenic not near genes chr3L_5_13535001 chr3L_13535001 RAL-707 1055 chr3L 13595033 13595037 chr3L 13595113 13595117 4 80 3.0 3.5 3.2 1.0 84 chr3L 13595033 intron bru-3 - chr3L 13595075 intron bru-3 - chr3L 13595117 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-707 1056 chr3L 13629528 13629549 chr3L 13629639 13629660 5 111 3.0 7.5 5.2 0.8 132 chr3L 13629528 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-707 1057 chr3L 13633418 13633444 chr3L 13633772 13633798 9 354 1.0 3.0 2.0 3.0 380 chr3L 13633418 intron bru-3 - chr3L 13633608 intron bru-3 - chr3L 13633798 intron bru-3 - chr3L_9_13630001 chr3L_13630001 RAL-707 1058 chr3L 13648887 13648910 chr3L 13648977 13649000 5 89 2.0 3.5 2.8 1.3 113 chr3L 13648887 intron bru-3 - chr3L 13648944 intron bru-3 - chr3L 13649000 intron bru-3 - chr3L_5_13645001 chr3L_13645001 RAL-707 1059 chr3L 13677529 13677740 chr3L 13677606 13677896 4 97 0.0 1.5 0.8 2.2 367 chr3L 13677529 intron bru-3 - chr3L 13677712 intron bru-3 - chr3L 13677896 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-707 1060 chr3L 13677751 13677757 chr3L 13677907 13677913 4 156 0.0 1.5 0.8 2.2 162 chr3L 13677751 intron bru-3 - chr3L 13677832 intron bru-3 - chr3L 13677913 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-707 1061 chr3L 13703433 13703455 chr3L 13703519 13703541 6 86 3.0 2.0 2.5 1.7 108 chr3L 13703433 intron bru-3 - chr3L 13703487 intron bru-3 - chr3L 13703541 intron bru-3 - chr3L_6_13700001 chr3L_13700001 RAL-707 1062 chr3L 13722450 13722472 chr3L 13722527 13722550 8 78 1.5 3.5 2.5 2.3 100 chr3L 13722450 intron bru-3 - chr3L 13722500 intron bru-3 - chr3L 13722550 intron bru-3 - chr3L_8_13720001 chr3L_13720001 RAL-707 1063 chr3L 13740035 13740049 chr3L 13740126 13740142 6 93 3.5 1.0 2.2 1.9 107 chr3L 13740035 intron bru-3 - chr3L 13740088 intron bru-3 - chr3L 13740142 intron bru-3 - chr3L_6_13740001 chr3L_13740001 RAL-707 1064 chr3L 13804543 13804563 chr3L 13822829 13822849 roo 4 18286 4.0 3.5 3.8 0.8 18306 chr3L 13804543 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822849 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-707 1065 chr3L 13957897 13957905 chr3L 13958090 13958098 5 193 2.0 4.5 3.2 1.2 201 chr3L 13957897 intron CG32137 + chr3L 13957998 intron CG32137 + chr3L 13958098 intron CG32137 + chr3L_5_13955001 chr3L_13955001 RAL-707 1066 chr3L 13986601 13986629 chr3L 13988338 13988366 5 1737 2.0 2.0 2.0 1.7 1765 chr3L 13986601 intron CG17364 - chr3L 13987484 intron CG17364 - chr3L 13988366 intron,exon CG17364 -,CG9040 + chr3L_5_13985001 chr3L_13985001 RAL-707 1067 chr3L 14175355 14175381 chr3L 14175503 14175529 4 147 1.0 1.5 1.2 1.8 174 chr3L 14175355 intergenic D - chr3L 14175442 intergenic D - chr3L 14175529 intergenic D - chr3L_4_14175001 chr3L_14175001 RAL-707 1068 chr3L 14211255 14211285 chr3L 14211350 14211381 5 95 1.0 1.0 1.0 2.5 126 chr3L 14211255 intron nuf + chr3L 14211318 intron nuf + chr3L 14211381 intron nuf + chr3L_5_14210001 chr3L_14210001 RAL-707 1069 chr3L 14245570 14245589 chr3L 14245664 14245683 1360 7 94 2.0 2.0 2.0 2.3 113 chr3L 14245570 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-707 1070 chr3L 14267373 14267395 chr3L 14271813 14271835 F-element 7 4440 2.5 3.5 3.0 1.8 4462 chr3L 14267373 intergenic not near genes chr3L 14269604 intergenic not near genes chr3L 14271835 intergenic not near genes chr3L_7_14265001 chr3L_14265001 RAL-707 1071 chr3L 14282593 14282603 chr3L 14282672 14282683 6 79 0.0 4.5 2.2 1.9 90 chr3L 14282593 intron fz + chr3L 14282638 intron fz + chr3L 14282683 intron fz + chr3L_6_14280001 chr3L_14280001 RAL-707 1072 chr3L 14295982 14296012 chr3L 14296467 14296498 roo 11 485 6.0 3.0 4.5 2.0 516 chr3L 14295982 intron fz + chr3L 14296240 intron fz + chr3L 14296498 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-707 1073 chr3L 14312023 14312058 chr3L 14316836 14316872 X-element 5 4814 1.5 3.5 2.5 1.4 4849 chr3L 14312023 exon fz + chr3L 14314448 intron fz + chr3L 14316872 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-707 1074 chr3L 14356520 14356548 chr3L 14356599 14356628 14 80 2.0 1.0 1.5 5.6 108 chr3L 14356520 intron fz + chr3L 14356574 intron fz + chr3L 14356628 intron fz + chr3L_14_14355001 chr3L_14355001 RAL-707 1075 chr3L 14429444 14429469 chr3L 14429517 14429544 11 76 1.0 2.5 1.8 3.9 100 chr3L 14429444 intron bbg - chr3L 14429494 intron bbg - chr3L 14429544 intron bbg - chr3L_11_14425001 chr3L_14425001 RAL-707 1076 chr3L 14454774 14454793 chr3L 14455046 14455064 4 272 4.0 4.0 4.0 0.8 290 chr3L 14454774 intron bbg - chr3L 14454919 intron bbg - chr3L 14455064 intron bbg - chr3L_4_14450001 chr3L_14450001 RAL-707 1077 chr3L 14468454 14468477 chr3L 14473660 14473681 copia 5 5206 1.5 4.5 3.0 1.2 5227 chr3L 14468454 intron bbg - chr3L 14471068 intron bbg - chr3L 14473681 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-707 1078 chr3L 14514694 14514696 chr3L 22908066 22908066 Stalker2 7 8393372 10.0 16.0 13.0 0.5 8393372 chr3L 14514694 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_7_18710001 chr3L_18710001 RAL-707 1079 chr3L 14546617 14546818 chr3L 14546698 14546899 7 81 0.0 5.0 2.5 2.0 282 chr3L 14546617 intron CG9238 - chr3L 14546758 intron CG9238 - chr3L 14546899 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-707 1080 chr3L 14549563 14549594 chr3L 14549657 14549688 7 94 1.0 2.5 1.8 2.5 125 chr3L 14549563 intron CG9238 - chr3L 14549626 intron CG9238 - chr3L 14549688 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-707 1081 chr3L 14596111 14596143 chr3L 14596190 14596223 8 79 0.0 0.0 0.0 8.0 112 chr3L 14596111 intron HGTX - chr3L 14596167 intron HGTX - chr3L 14596223 intron HGTX - chr3L_8_14595001 chr3L_14595001 RAL-707 1082 chr3L 14633793 14633806 chr3L 14633889 14633902 4 96 4.0 2.0 3.0 1.0 109 chr3L 14633793 intron dlp + chr3L 14633848 intron dlp + chr3L 14633902 intron dlp + chr3L_4_14630001 chr3L_14630001 RAL-707 1083 chr3L 14721181 14721210 chr3L 14723024 14723053 Rt1c 14 1842 3.0 4.5 3.8 2.9 1872 chr3L 14721181 intron ome + chr3L 14722117 intron ome + chr3L 14723053 intron ome + chr3L_14_14720001 chr3L_14720001 RAL-707 1084 chr3L 14741141 14741169 chr3L 14741219 14741246 9 78 1.5 2.5 2.0 3.0 105 chr3L 14741141 intron ome + chr3L 14741194 intron ome + chr3L 14741246 intron ome + chr3L_9_14740001 chr3L_14740001 RAL-707 1085 chr3L 14849258 14849283 chr3L 14849351 14849375 12 93 2.5 4.0 3.2 2.9 117 chr3L 14849258 intron CG17839 + chr3L 14849316 intron CG17839 + chr3L 14849375 intron CG17839 + chr3L_12_14845001 chr3L_14845001 RAL-707 1086 chr3L 14861803 14861830 chr3L 14861883 14861910 6 80 3.0 4.0 3.5 1.3 107 chr3L 14861803 intron CG17839 + chr3L 14861856 intron CG17839 + chr3L 14861910 intron CG17839 + chr3L_6_14860001 chr3L_14860001 RAL-707 1087 chr3L 14917660 14917692 chr3L 14917743 14917775 11 83 2.5 2.0 2.2 3.4 115 chr3L 14917660 intron DCX-EMAP + chr3L 14917718 intron DCX-EMAP + chr3L 14917775 intron DCX-EMAP + chr3L_11_14915001 chr3L_14915001 RAL-707 1088 chr3L 14954371 14954395 chr3L 14956040 14956060 transib2 4 1668 1.5 2.0 1.8 1.4 1689 chr3L 14954371 intergenic not near genes chr3L 14955216 intergenic not near genes chr3L 14956060 intergenic not near genes chr3L_4_14955001 chr3L_14955001 RAL-707 1089 chr3L 14959947 14959972 chr3L 14960028 14960053 4 81 0.5 2.0 1.2 1.8 106 chr3L 14959947 intergenic not near genes chr3L 14960000 intergenic not near genes chr3L 14960053 intergenic not near genes chr3L_4_14960001 chr3L_14960001 RAL-707 1090 chr3L 15063701 15063703 chr3L 22908066 22908067 4 7844364 12.0 16.0 14.0 0.3 7844366 chr3L 15063701 intron Sytbeta - chr3L 18985884 intergenic CG11619 -,CG14075 + chr3L 22908067 intergenic not near genes chr3L_4_18985001 chr3L_18985001 RAL-707 1091 chr3L 15069792 15069812 chr3L 15069943 15069950 5 148 15.5 3.0 9.2 0.5 158 chr3L 15069792 exon cp309 - chr3L 15069871 intron cp309 - chr3L 15069950 exon cp309 - chr3L_5_15065001 chr3L_15065001 RAL-707 1092 chr3L 15184946 15184971 chr3L 15185037 15185066 6 94 3.5 0.0 1.8 2.1 120 chr3L 15184946 intergenic not near genes chr3L 15185006 intergenic not near genes chr3L 15185066 intergenic not near genes chr3L_6_15185001 chr3L_15185001 RAL-707 1093 chr3L 15233565 15233584 chr3L 15233646 15233665 9 81 1.0 1.5 1.2 4.1 100 chr3L 15233565 intergenic not near genes chr3L 15233615 intergenic not near genes chr3L 15233665 intergenic not near genes chr3L_9_15230001 chr3L_15230001 RAL-707 1094 chr3L 15261722 15261724 chr3L 22908066 22908067 13 7646343 9.0 16.0 12.5 1.0 7646345 chr3L 15261722 intergenic not near genes chr3L 19084894 intron Mkp3 - chr3L 22908067 intergenic not near genes chr3L_13_19080001 chr3L_19080001 RAL-707 1095 chr3L 15384955 15384985 chr3L 15385083 15385113 7 127 0.5 2.5 1.5 2.8 158 chr3L 15384955 intergenic not near genes chr3L 15385034 intergenic not near genes chr3L 15385113 intergenic not near genes chr3L_7_15385001 chr3L_15385001 RAL-707 1096 chr3L 15406019 15406048 chr3L 15406101 15406131 4 83 0.0 1.0 0.5 2.7 112 chr3L 15406019 intergenic not near genes chr3L 15406075 intergenic not near genes chr3L 15406131 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-707 1097 chr3L 15423772 15423784 chr3L 15426616 15426628 opus 4 2844 2.5 2.5 2.5 1.1 2856 chr3L 15423772 intergenic not near genes chr3L 15425200 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-707 1098 chr3L 15444653 15444680 chr3L 15444747 15444774 17 93 3.5 4.0 3.8 3.5 121 chr3L 15444653 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444774 intergenic not near genes chr3L_17_15440001 chr3L_15440001 RAL-707 1099 chr3L 15463461 15463493 chr3L 15463551 15463583 11 90 1.0 6.5 3.8 2.3 122 chr3L 15463461 intergenic not near genes chr3L 15463522 intergenic not near genes chr3L 15463583 intergenic not near genes chr3L_11_15460001 chr3L_15460001 RAL-707 1100 chr3L 15466037 15466127 chr3L 15466119 15466223 7 88 0.0 0.0 0.0 7.0 186 chr3L 15466037 intergenic not near genes chr3L 15466130 intergenic not near genes chr3L 15466223 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-707 1101 chr3L 15615933 15615957 chr3L 15616029 15616053 6 96 3.0 3.0 3.0 1.5 120 chr3L 15615933 intron comm3 - chr3L 15615993 intron comm3 - chr3L 15616053 intron comm3 - chr3L_6_15615001 chr3L_15615001 RAL-707 1102 chr3L 15641799 15641812 chr3L 15641884 15641896 4 85 0.0 3.0 1.5 1.6 97 chr3L 15641799 intron comm3 - chr3L 15641848 intron comm3 - chr3L 15641896 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-707 1103 chr3L 15691414 15691444 chr3L 15691496 15691526 4 82 1.0 0.0 0.5 2.7 112 chr3L 15691414 intron CG34451 - chr3L 15691470 intron CG34451 - chr3L 15691526 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-707 1104 chr3L 15747569 15747594 chr3L 15747645 15747670 5 76 2.0 1.5 1.8 1.8 101 chr3L 15747569 5` UTR CR45240 + chr3L 15747620 5` UTR CR45240 + chr3L 15747670 5` UTR CR45240 + chr3L_5_15745001 chr3L_15745001 RAL-707 1105 chr3L 15748454 15748475 chr3L 15748539 15748559 5 83 5.0 2.0 3.5 1.1 105 chr3L 15748454 5` UTR CR45240 + chr3L 15748506 5` UTR CR45240 + chr3L 15748559 5` UTR CR45240 + chr3L_5_15745001 chr3L_15745001 RAL-707 1106 chr3L 15778580 15778608 chr3L 15778662 15778689 5 81 2.5 0.5 1.5 2.0 109 chr3L 15778580 intergenic not near genes chr3L 15778634 intergenic not near genes chr3L 15778689 intergenic not near genes chr3L_5_15775001 chr3L_15775001 RAL-707 1107 chr3L 15880599 15880617 chr3L 15880677 15880696 7 78 6.0 4.5 5.2 1.1 97 chr3L 15880599 intron pHCl - chr3L 15880648 intron pHCl - chr3L 15880696 intron pHCl - chr3L_7_15880001 chr3L_15880001 RAL-707 1108 chr3L 15883189 15883216 chr3L 15883482 15883508 4 292 1.0 2.0 1.5 1.6 319 chr3L 15883189 intron pHCl - chr3L 15883348 intron pHCl - chr3L 15883508 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-707 1109 chr3L 15899228 15899260 chr3L 15899790 15899827 jockey 8 566 1.5 3.5 2.5 2.3 599 chr3L 15899228 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899827 intergenic sff - chr3L_8_15895001 chr3L_15895001 RAL-707 1110 chr3L 15920771 15920802 chr3L 15920868 15920899 11 97 2.0 2.5 2.2 3.4 128 chr3L 15920771 intron sff - chr3L 15920835 intron sff - chr3L 15920899 intron sff - chr3L_11_15920001 chr3L_15920001 RAL-707 1111 chr3L 15981676 15981685 chr3L 15981762 15981771 5 86 6.5 3.0 4.8 0.9 95 chr3L 15981676 intron,3` UTR brm -,CG17027 + chr3L 15981724 intron,3` UTR brm -,CG17027 + chr3L 15981771 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-707 1112 chr3L 16180353 16180370 chr3L 16180455 16180472 7 102 2.5 1.0 1.8 2.5 119 chr3L 16180353 intergenic not near genes chr3L 16180412 intergenic not near genes chr3L 16180472 intergenic not near genes chr3L_7_16180001 chr3L_16180001 RAL-707 1113 chr3L 16184110 16184140 chr3L 16188929 16188959 X-element 7 4819 4.0 1.0 2.5 2.0 4849 chr3L 16184110 intergenic not near genes chr3L 16186534 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-707 1114 chr3L 16201456 16201471 chr3L 16201564 16201579 4 108 6.5 2.5 4.5 0.7 123 chr3L 16201456 exon CG33690 + chr3L 16201518 exon CG33690 + chr3L 16201579 exon CG33690 + chr3L_4_16200001 chr3L_16200001 RAL-707 1115 chr3L 16240716 16240717 chr3L 16240864 16240866 4 149 1.5 2.5 2.0 1.3 150 chr3L 16240716 intergenic not near genes chr3L 16240791 intergenic not near genes chr3L 16240866 intergenic not near genes chr3L_4_16240001 chr3L_16240001 RAL-707 1116 chr3L 16279085 16279104 chr3L 16279166 16279185 4 81 1.5 1.0 1.2 1.8 100 chr3L 16279085 intron CG13050 - chr3L 16279135 intron CG13050 - chr3L 16279185 intron CG13050 - chr3L_4_16275001 chr3L_16275001 RAL-707 1117 chr3L 16322824 16323063 chr3L 16322914 16323162 13 91 25.0 2.5 13.8 0.9 338 chr3L 16322824 intergenic not near genes chr3L 16322993 intergenic not near genes chr3L 16323162 intergenic not near genes chr3L_13_16320001 chr3L_16320001 RAL-707 1118 chr3L 16360884 16360915 chr3L 16360962 16360993 16 78 2.0 5.0 3.5 3.6 109 chr3L 16360884 intron CG45057 - chr3L 16360938 intron CG45057 - chr3L 16360993 intron CG45057 - chr3L_16_16360001 chr3L_16360001 RAL-707 1119 chr3L 16443849 16443877 chr3L 16446189 16446217 Doc 12 2340 2.0 2.0 2.0 4.0 2368 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_12_16445001 chr3L_16445001 RAL-707 1120 chr3L 16450020 16450053 chr3L 16450105 16450138 9 85 0.5 1.5 1.0 4.5 118 chr3L 16450020 intron,intron CG33158 +,dsx-c73A - chr3L 16450079 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_9_16450001 chr3L_16450001 RAL-707 1121 chr3L 16479836 16479866 chr3L 16479935 16479965 6 98 2.5 2.0 2.2 1.9 129 chr3L 16479836 intron,intron CG33158 +,aos - chr3L 16479900 intron,intron CG33158 +,aos - chr3L 16479965 intron,intron CG33158 +,aos - chr3L_6_16475001 chr3L_16475001 RAL-707 1122 chr3L 16493979 16493991 chr3L 16494496 16494508 jockey 5 517 7.5 4.0 5.8 0.7 529 chr3L 16493979 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494508 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-707 1123 chr3L 16503625 16503657 chr3L 16503702 16503733 5 76 0.0 0.0 0.0 5.0 108 chr3L 16503625 intron CG43373 - chr3L 16503679 intron CG43373 - chr3L 16503733 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-707 1124 chr3L 16563231 16563256 chr3L 16563312 16563337 4 81 1.5 0.0 0.8 2.2 106 chr3L 16563231 intergenic Mipp1 - chr3L 16563284 intergenic Mipp1 - chr3L 16563337 intergenic Mipp1 - chr3L_4_16560001 chr3L_16560001 RAL-707 1125 chr3L 16581767 16581796 chr3L 16582131 16582158 14 364 5.5 1.5 3.5 3.1 391 chr3L 16581767 5` UTR CR43727 + chr3L 16581962 5` UTR CR43727 + chr3L 16582158 5` UTR CR43727 + chr3L_14_16580001 chr3L_16580001 RAL-707 1126 chr3L 16616511 16616540 chr3L 16621839 16621868 297 8 5328 2.0 2.0 2.0 2.7 5357 chr3L 16616511 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621868 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-707 1127 chr3L 16708525 16708548 chr3L 16708639 16708662 7 114 1.5 1.0 1.2 3.2 137 chr3L 16708525 intron,intron Lasp -,CG43954 - chr3L 16708594 intron,intron Lasp -,CG43954 - chr3L 16708662 intron,intron Lasp -,CG43954 - chr3L_7_16705001 chr3L_16705001 RAL-707 1128 chr3L 16745584 16745597 chr3L 16745659 16745674 5 76 5.0 5.0 5.0 0.8 90 chr3L 16745584 intergenic not near genes chr3L 16745629 intergenic not near genes chr3L 16745674 intergenic not near genes chr3L_5_16745001 chr3L_16745001 RAL-707 1129 chr3L 16815863 16815887 chr3L 16815949 16815970 4 85 2.5 4.5 3.5 0.9 107 chr3L 16815863 intron,intron nudC +,CG13024 - chr3L 16815916 intron,intron nudC +,CG13024 - chr3L 16815970 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-707 1130 chr3L 16818748 16818777 chr3L 16818824 16818853 8 76 3.0 4.0 3.5 1.8 105 chr3L 16818748 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818853 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-707 1131 chr3L 16845025 16845044 chr3L 16845138 16845157 6 113 2.5 2.5 2.5 1.7 132 chr3L 16845025 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845091 intergenic CG9669 -,CG9715 + chr3L 16845157 intergenic CG9669 -,CG9715 + chr3L_6_16845001 chr3L_16845001 RAL-707 1132 chr3L 16866218 16866227 chr3L 16866300 16866318 7 90 3.0 1.0 2.0 2.3 100 chr3L 16866218 intron Lmpt + chr3L 16866268 intron Lmpt + chr3L 16866318 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-707 1133 chr3L 16867551 16867569 chr3L 16867629 16867647 4 78 3.0 5.5 4.2 0.8 96 chr3L 16867551 intron Lmpt + chr3L 16867599 intron Lmpt + chr3L 16867647 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-707 1134 chr3L 16919951 16919973 chr3L 16920057 16920079 8 106 2.5 1.5 2.0 2.7 128 chr3L 16919951 intron Lmpt + chr3L 16920015 intron Lmpt + chr3L 16920079 intron Lmpt + chr3L_8_16920001 chr3L_16920001 RAL-707 1135 chr3L 16945726 16945761 chr3L 16954878 16954914 roo 13 9153 3.5 0.0 1.8 4.6 9188 chr3L 16945726 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-707 1136 chr3L 17120660 17120944 chr3L 17120736 17121019 13 76 2.0 3.5 2.8 3.4 359 chr3L 17120660 intron Rbp6 - chr3L 17120840 intron Rbp6 - chr3L 17121019 intron Rbp6 - chr3L_13_17120001 chr3L_17120001 RAL-707 1137 chr3L 17126014 17126044 chr3L 17126229 17126259 8 215 2.0 1.0 1.5 3.2 245 chr3L 17126014 intron Rbp6 - chr3L 17126136 intron Rbp6 - chr3L 17126259 intron Rbp6 - chr3L_8_17125001 chr3L_17125001 RAL-707 1138 chr3L 17146953 17146988 chr3L 17147035 17147069 13 82 2.5 1.0 1.8 4.6 116 chr3L 17146953 intron Rbp6 - chr3L 17147011 intron Rbp6 - chr3L 17147069 intron Rbp6 - chr3L_13_17145001 chr3L_17145001 RAL-707 1139 chr3L 17149165 17149182 chr3L 17149246 17149263 9 81 4.5 0.0 2.2 2.8 98 chr3L 17149165 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-707 1140 chr3L 17164380 17164399 chr3L 17164521 17164539 5 141 1.5 0.0 0.8 2.8 159 chr3L 17164380 intron Rbp6 - chr3L 17164460 intron Rbp6 - chr3L 17164539 intron Rbp6 - chr3L_5_17160001 chr3L_17160001 RAL-707 1141 chr3L 17510745 17510765 chr3L 17510829 17510849 4 84 3.0 6.0 4.5 0.7 104 chr3L 17510745 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-707 1142 chr3L 17516979 17517013 chr3L 17524537 17524568 412 7 7557 4.0 3.0 3.5 1.6 7589 chr3L 17516979 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-707 1143 chr3L 17580592 17580609 chr3L 17580767 17580785 8 176 3.0 0.0 1.5 3.2 193 chr3L 17580592 intron Eip74EF - chr3L 17580688 intron Eip74EF - chr3L 17580785 intron Eip74EF - chr3L_8_17580001 chr3L_17580001 RAL-707 1144 chr3L 17646015 17646048 chr3L 17646180 17646213 11 165 26.0 25.5 25.8 0.4 198 chr3L 17646015 exon CG43085 - chr3L 17646114 exon CG43085 - chr3L 17646213 exon CG43085 - chr3L_11_17645001 chr3L_17645001 RAL-707 1145 chr3L 17730854 17730882 chr3L 17738184 17738212 mdg1 7 7330 2.0 0.0 1.0 3.5 7358 chr3L 17730854 intron Ccn + chr3L 17734533 intron Ccn + chr3L 17738212 intron Ccn + chr3L_7_17730001 chr3L_17730001 RAL-707 1146 chr3L 17789841 17789876 chr3L 17789917 17789951 6 76 0.5 1.0 0.8 3.3 110 chr3L 17789841 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789951 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-707 1147 chr3L 17799812 17799838 chr3L 17801598 17801625 S-element 4 1787 3.0 0.5 1.8 1.4 1813 chr3L 17799812 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801625 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 RAL-707 1148 chr3L 17983502 17983523 chr3L 17983651 17983672 7 149 2.0 4.5 3.2 1.7 170 chr3L 17983502 intron Eip75B - chr3L 17983587 intron Eip75B - chr3L 17983672 intron Eip75B - chr3L_7_17980001 chr3L_17980001 RAL-707 1149 chr3L 18092782 18092805 chr3L 18092896 18092920 9 115 4.0 0.0 2.0 3.0 138 chr3L 18092782 intron CG13698 - chr3L 18092851 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_9_18090001 chr3L_18090001 RAL-707 1150 chr3L 18119659 18119674 chr3L 18119756 18119772 7 98 0.0 3.0 1.5 2.8 113 chr3L 18119659 intron CG7341 + chr3L 18119716 intron CG7341 + chr3L 18119772 intron CG7341 + chr3L_7_18115001 chr3L_18115001 RAL-707 1151 chr3L 18197454 18197481 chr3L 18197651 18197678 7 196 1.5 3.5 2.5 2.0 224 chr3L 18197454 intergenic not near genes chr3L 18197566 intergenic not near genes chr3L 18197678 intergenic not near genes chr3L_7_18195001 chr3L_18195001 RAL-707 1152 chr3L 18223167 18223188 chr3L 18223250 18223270 7 82 0.0 0.0 0.0 7.0 103 chr3L 18223167 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223270 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-707 1153 chr3L 18248952 18248982 chr3L 18249050 18249080 4 98 0.0 1.0 0.5 2.7 128 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249080 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-707 1154 chr3L 18258862 18258887 chr3L 18258987 18259012 8 125 1.0 1.5 1.2 3.6 150 chr3L 18258862 intergenic not near genes chr3L 18258937 intergenic not near genes chr3L 18259012 intergenic not near genes chr3L_8_18255001 chr3L_18255001 RAL-707 1155 chr3L 18267865 18267980 chr3L 18267942 18268057 6 77 2.5 2.5 2.5 1.7 192 chr3L 18267865 intergenic not near genes chr3L 18267961 intergenic not near genes chr3L 18268057 intergenic not near genes chr3L_6_18265001 chr3L_18265001 RAL-707 1156 chr3L 9013689 9013694 chr3L 18417066 18417066 4 9403376 23.0 15.5 19.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-707 1157 chr3L 18506137 18506161 chr3L 18509600 18509624 F-element 4 3463 1.5 3.5 2.5 1.1 3487 chr3L 18506137 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509624 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-707 1158 chr3L 18528626 18528657 chr3L 18537787 18537818 roo 7 9160 2.5 3.0 2.8 1.8 9192 chr3L 18528626 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-707 1159 chr3L 18538637 18538649 chr3L 18539130 18539142 6 492 3.5 2.5 3.0 1.5 505 chr3L 18538637 intergenic not near genes chr3L 18538890 intergenic not near genes chr3L 18539142 intergenic not near genes chr3L_6_18535001 chr3L_18535001 RAL-707 1160 chr3L 18593955 18593969 chr3L 18595935 18595949 Doc 4 1980 2.5 0.0 1.2 1.8 1994 chr3L 18593955 intergenic term - chr3L 18594952 intergenic not near genes chr3L 18595949 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-707 1161 chr3L 18606749 18606767 chr3L 18606945 18606965 4 197 4.5 1.5 3.0 1.0 216 chr3L 18606749 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606857 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606965 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_4_18605001 chr3L_18605001 RAL-707 1162 chr3L 18634632 18634655 chr3L 18634714 18634739 5 84 1.5 2.5 2.0 1.7 107 chr3L 18634632 intron MYPT-75D + chr3L 18634686 intron MYPT-75D + chr3L 18634739 intron MYPT-75D + chr3L_5_18630001 chr3L_18630001 RAL-707 1163 chr3L 18649647 18649657 chr3L 18650008 18650020 5 363 5.5 0.0 2.8 1.3 373 chr3L 18649647 intron MYPT-75D + chr3L 18649834 intron MYPT-75D + chr3L 18650020 intron MYPT-75D + chr3L_5_18645001 chr3L_18645001 RAL-707 1164 chr3L 18653951 18653970 chr3L 18654040 18654052 4 87 1.0 2.5 1.8 1.4 101 chr3L 18653951 intron MYPT-75D + chr3L 18654002 intron MYPT-75D + chr3L 18654052 intron MYPT-75D + chr3L_4_18650001 chr3L_18650001 RAL-707 1165 chr3L 18701129 18701162 chr3L 18701217 18701250 12 88 2.0 1.0 1.5 4.8 121 chr3L 18701129 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701250 intergenic not near genes chr3L_12_18700001 chr3L_18700001 RAL-707 1166 chr3L 18710761 18710791 chr3L 18718713 18718743 Stalker2 5 7952 2.0 1.5 1.8 1.8 7982 chr3L 18710761 intergenic not near genes chr3L 18714752 intergenic not near genes chr3L 18718743 intergenic not near genes chr3L_5_18710001 chr3L_18710001 RAL-707 1167 chr3L 18724487 18724517 chr3L 18724684 18724714 6 196 1.5 1.0 1.2 2.7 227 chr3L 18724487 intergenic CR43985 + chr3L 18724600 intergenic CR43985 + chr3L 18724714 intergenic CR43985 + chr3L_6_18720001 chr3L_18720001 RAL-707 1168 chr3L 18739062 18739081 chr3L 18739310 18739330 4 249 2.0 1.5 1.8 1.4 268 chr3L 18739062 intergenic not near genes chr3L 18739196 intergenic not near genes chr3L 18739330 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-707 1169 chr3L 18772408 18772431 chr3L 18781089 18781112 roo 8 8681 0.5 2.5 1.5 3.2 8704 chr3L 18772408 intron ftz-f1 - chr3L 18776760 intron ftz-f1 - chr3L 18781112 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-707 1170 chr3L 18797312 18797334 chr3L 18797395 18797418 4 83 1.0 1.5 1.2 1.8 106 chr3L 18797312 intron ftz-f1 - chr3L 18797365 intron ftz-f1 - chr3L 18797418 intron ftz-f1 - chr3L_4_18795001 chr3L_18795001 RAL-707 1171 chr3L 18868963 18868994 chr3L 18869044 18869075 5 81 1.5 1.5 1.5 2.0 112 chr3L 18868963 3` UTR Dysb + chr3L 18869019 3` UTR Dysb + chr3L 18869075 3` UTR Dysb + chr3L_5_18865001 chr3L_18865001 RAL-707 1172 chr3L 18896764 18896788 chr3L 18896898 18896923 4 135 1.0 1.0 1.0 2.0 159 chr3L 18896764 intron CG3902 - chr3L 18896844 intron CG3902 - chr3L 18896923 intron CG3902 - chr3L_4_18895001 chr3L_18895001 RAL-707 1173 chr3L 18929961 18929986 chr3L 18930043 18930070 7 84 1.0 4.0 2.5 2.0 109 chr3L 18929961 intron CG32204 - chr3L 18930016 intron CG32204 - chr3L 18930070 exon CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-707 1174 chr3L 18933625 18933660 chr3L 18933719 18933753 6 94 0.5 2.0 1.2 2.7 128 chr3L 18933625 intron CG32204 - chr3L 18933689 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-707 1175 chr3L 18958602 18958619 chr3L 18958678 18958694 9 76 2.5 2.0 2.2 2.8 92 chr3L 18958602 intergenic not near genes chr3L 18958648 intergenic not near genes chr3L 18958694 intergenic not near genes chr3L_9_18955001 chr3L_18955001 RAL-707 1176 chr3L 19008856 19008872 chr3L 19009192 19009210 jockey 6 338 1.5 3.0 2.2 1.9 354 chr3L 19008856 intron nkd - chr3L 19009033 intron nkd - chr3L 19009210 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-707 1177 chr3L 19015184 19015217 chr3L 19015268 19015296 5 81 0.0 2.0 1.0 2.5 112 chr3L 19015184 intron nkd - chr3L 19015240 intron nkd - chr3L 19015296 intron nkd - chr3L_5_19015001 chr3L_19015001 RAL-707 1178 chr3L 19115648 19115669 chr3L 19115825 19115847 BS 4 177 2.5 3.0 2.8 1.1 199 chr3L 19115648 intron CG14082 - chr3L 19115748 intron CG14082 - chr3L 19115847 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-707 1179 chr3L 19117045 19117073 chr3L 19124492 19124519 mdg1 9 7447 4.0 5.0 4.5 1.6 7474 chr3L 19117045 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-707 1180 chr3L 19127732 19127764 chr3L 19127819 19127851 13 87 2.5 1.5 2.0 4.3 119 chr3L 19127732 intron CG14082 - chr3L 19127792 intron CG14082 - chr3L 19127851 intron CG14082 - chr3L_13_19125001 chr3L_19125001 RAL-707 1181 chr3L 19182390 19182418 chr3L 19182471 19182499 6 81 0.5 2.0 1.2 2.7 109 chr3L 19182390 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182499 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-707 1182 chr3L 19208060 19208091 chr3L 19209432 19209465 Doc 6 1374 2.0 1.5 1.8 2.1 1405 chr3L 19208060 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209465 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-707 1183 chr3L 9307796 9307796 chr3L 19220637 19220637 4 9912841 11.0 12.5 11.8 0.3 9912841 chr3L 9307796 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_4_14260001 chr3L_14260001 RAL-707 1184 chr3L 19336999 19337007 chr3L 19337085 19337093 4 86 1.5 4.0 2.8 1.1 94 chr3L 19336999 intron pip - chr3L 19337046 intron pip - chr3L 19337093 intron pip - chr3L_4_19335001 chr3L_19335001 RAL-707 1185 chr3L 19342760 19342772 chr3L 19342851 19342863 4 91 2.0 1.5 1.8 1.4 103 chr3L 19342760 3` UTR CG32206 - chr3L 19342812 3` UTR CG32206 - chr3L 19342863 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-707 1186 chr3L 19365924 19365930 chr3L 19366021 19366026 4 97 0.0 6.5 3.2 1.0 102 chr3L 19365924 intron CG32206 - chr3L 19365975 intron CG32206 - chr3L 19366026 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-707 1187 chr3L 19404976 19405009 chr3L 19405052 19405086 7 77 0.5 2.0 1.2 3.2 110 chr3L 19404976 intron CG32206 - chr3L 19405031 intron CG32206 - chr3L 19405086 intron CG32206 - chr3L_7_19405001 chr3L_19405001 RAL-707 1188 chr3L 19423067 19423083 chr3L 19423158 19423174 4 91 2.5 9.5 6.0 0.6 107 chr3L 19423067 3` UTR CR32205 - chr3L 19423120 3` UTR CR32205 - chr3L 19423174 3` UTR CR32205 - chr3L_4_19420001 chr3L_19420001 RAL-707 1189 chr3L 19426758 19426780 chr3L 19426831 19426858 7 77 1.5 4.5 3.0 1.8 100 chr3L 19426758 intergenic not near genes chr3L 19426808 intergenic not near genes chr3L 19426858 intergenic not near genes chr3L_7_19425001 chr3L_19425001 RAL-707 1190 chr3L 19488477 19488500 chr3L 19488559 19488582 5 82 4.0 1.5 2.8 1.3 105 chr3L 19488477 intergenic pncr009:3L -,CG32212 + chr3L 19488530 intergenic pncr009:3L -,CG32212 + chr3L 19488582 intergenic pncr009:3L -,CG32212 + chr3L_5_19485001 chr3L_19485001 RAL-707 1191 chr3L 19527922 19527960 chr3L 19528001 19528038 9 78 4.5 3.5 4.0 1.8 116 chr3L 19527922 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528038 intergenic not near genes chr3L_9_19525001 chr3L_19525001 RAL-707 1192 chr3L 19848505 19848535 chr3L 19857695 19857725 roo 7 9190 3.5 3.5 3.5 1.6 9220 chr3L 19848505 intron Papss + chr3L 19853115 intron Papss + chr3L 19857725 intron Papss + chr3L_7_19850001 chr3L_19850001 RAL-707 1193 chr3L 19929206 19929207 chr3L 22908066 22908067 8 2978860 10.5 16.0 13.2 0.6 2978861 chr3L 19929206 intron RhoGDI + chr3L 21418636 intron rgn + chr3L 22908067 intergenic not near genes chr3L_8_21415001 chr3L_21415001 RAL-707 1194 chr3L 19962955 19962974 chr3L 19963033 19963052 5 78 1.5 3.0 2.2 1.6 97 chr3L 19962955 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963052 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-707 1195 chr3L 19981205 19981216 chr3L 19981285 19981296 4 80 3.0 0.0 1.5 1.6 91 chr3L 19981205 intergenic CG17732 + chr3L 19981250 intergenic CG17732 + chr3L 19981296 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-707 1196 chr3L 20113657 20113689 chr3L 20122914 20122946 roo 4 9257 3.5 3.0 3.2 1.0 9289 chr3L 20113657 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122946 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-707 1197 chr3L 20143083 20143108 chr3L 20143163 20143188 7 80 3.0 3.0 3.0 1.8 105 chr3L 20143083 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143188 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-707 1198 chr3L 20148288 20148316 chr3L 20148378 20148406 6 90 1.0 2.5 1.8 2.1 118 chr3L 20148288 intergenic not near genes chr3L 20148347 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_6_20145001 chr3L_20145001 RAL-707 1199 chr3L 20257334 20257362 chr3L 20258453 20258482 pogo 19 1120 1.0 3.5 2.2 5.9 1148 chr3L 20257334 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258482 intron rdgC + chr3L_19_20255001 chr3L_20255001 RAL-707 1200 chr3L 20476753 20476769 chr3L 20484352 20484368 springer 6 7599 4.5 2.0 3.2 1.4 7615 chr3L 20476753 3` UTR isoQC + chr3L 20480560 intergenic not near genes chr3L 20484368 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-707 1201 chr3L 20590071 20590097 chr3L 20590610 20590635 412 4 537 3.5 2.5 3.0 1.0 564 chr3L 20590071 intergenic not near genes chr3L 20590353 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-707 1202 chr3L 20752116 20752138 chr3L 20752194 20752216 5 78 3.5 1.5 2.5 1.4 100 chr3L 20752116 intergenic not near genes chr3L 20752166 intergenic not near genes chr3L 20752216 intergenic not near genes chr3L_5_20750001 chr3L_20750001 RAL-707 1203 chr3L 20771563 20771567 chr3L 22908066 22908067 9 2136502 18.5 16.0 17.2 0.5 2136504 chr3L 20771563 5` UTR Pitslre + chr3L 21839815 5` UTR P5CDh1 - chr3L 22908067 intergenic not near genes chr3L_9_21835001 chr3L_21835001 RAL-707 1204 chr3L 20821291 20821309 chr3L 20824902 20824920 NOF 4 3611 1.5 4.0 2.8 1.1 3629 chr3L 20821291 intron Pka-R1 + chr3L 20823106 intron Pka-R1 + chr3L 20824920 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-707 1205 chr3L 20863611 20863625 chr3L 20863802 20863816 7 191 4.5 2.5 3.5 1.6 205 chr3L 20863611 intron CG32432 - chr3L 20863714 intron CG32432 - chr3L 20863816 intron CG32432 - chr3L_7_20860001 chr3L_20860001 RAL-707 1206 chr3L 20864650 20864675 chr3L 20864731 20864756 5 81 4.0 2.5 3.2 1.2 106 chr3L 20864650 intron CG32432 - chr3L 20864703 intron CG32432 - chr3L 20864756 intron CG32432 - chr3L_5_20860001 chr3L_20860001 RAL-707 1207 chr3L 20917090 20917121 chr3L 20917166 20917198 12 77 2.0 3.0 2.5 3.4 108 chr3L 20917090 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917198 intergenic not near genes chr3L_12_20915001 chr3L_20915001 RAL-707 1208 chr3L 20964622 20964648 chr3L 20964699 20964725 8 77 2.0 4.0 3.0 2.0 103 chr3L 20964622 3` UTR CG12983 - chr3L 20964674 3` UTR CG12983 - chr3L 20964725 3` UTR CG12983 - chr3L_8_20960001 chr3L_20960001 RAL-707 1209 chr3L 20977414 20977439 chr3L 20977540 20977565 7 126 4.0 2.5 3.2 1.7 151 chr3L 20977414 intergenic not near genes chr3L 20977490 intergenic not near genes chr3L 20977565 intergenic not near genes chr3L_7_20975001 chr3L_20975001 RAL-707 1210 chr3L 21010372 21010392 chr3L 21010479 21010499 4 107 5.0 1.5 3.2 1.0 127 chr3L 21010372 intron skd - chr3L 21010436 intron skd - chr3L 21010499 intron skd - chr3L_4_21010001 chr3L_21010001 RAL-707 1211 chr3L 21014915 21014947 chr3L 21023396 21023428 Tirant 6 8480 3.5 3.0 3.2 1.4 8513 chr3L 21014915 intron skd - chr3L 21019172 intron skd - chr3L 21023428 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-707 1212 chr3L 21057144 21057151 chr3L 21057358 21057367 4 216 2.0 1.0 1.5 1.6 223 chr3L 21057144 intron siz + chr3L 21057256 intron siz + chr3L 21057367 intron siz + chr3L_4_21055001 chr3L_21055001 RAL-707 1213 chr3L 21082227 21082241 chr3L 21082305 21082318 5 78 0.5 6.0 3.2 1.2 91 chr3L 21082227 intron ko - chr3L 21082272 intron ko - chr3L 21082318 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-707 1214 chr3L 21085583 21085614 chr3L 21085970 21086002 11 387 1.5 2.0 1.8 3.9 419 chr3L 21085583 intron ko - chr3L 21085792 intron ko - chr3L 21086002 intron ko - chr3L_11_21085001 chr3L_21085001 RAL-707 1215 chr3L 21151867 21151887 chr3L 21156951 21156971 flea 6 5084 4.5 2.5 3.5 1.3 5104 chr3L 21151867 intron Ac78C - chr3L 21154419 intron Ac78C - chr3L 21156971 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-707 1216 chr3L 21243749 21243757 chr3L 21251311 21251320 412 6 7562 4.5 2.5 3.5 1.3 7571 chr3L 21243749 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251320 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-707 1217 chr3L 21306151 21306178 chr3L 21315310 21315337 roo 9 9159 1.0 2.5 1.8 3.2 9186 chr3L 21306151 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-707 1218 chr3L 21406997 21407006 chr3L 21407076 21407085 4 78 5.0 3.0 4.0 0.8 88 chr3L 21406997 intron rgn + chr3L 21407041 intron rgn + chr3L 21407085 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-707 1219 chr3L 21415136 21415165 chr3L 21415218 21415248 12 83 3.0 2.5 2.8 3.2 112 chr3L 21415136 intron rgn + chr3L 21415192 intron rgn + chr3L 21415248 intron rgn + chr3L_12_21415001 chr3L_21415001 RAL-707 1220 chr3L 21498839 21498870 chr3L 21500473 21500506 1360 8 1636 3.0 5.0 4.0 1.6 1667 chr3L 21498839 intron Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500506 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-707 1221 chr3L 21639200 21639226 chr3L 21639278 21639305 7 79 2.5 4.5 3.5 1.6 105 chr3L 21639200 intergenic CG32444 +,CG32445 + chr3L 21639252 intergenic CG32445 +,CG32444 + chr3L 21639305 intergenic CG32445 +,CG32444 + chr3L_7_21635001 chr3L_21635001 RAL-707 1222 chr3L 21656995 21657021 chr3L 21657088 21657114 10 93 2.5 4.0 3.2 2.4 119 chr3L 21656995 intron CG43980 + chr3L 21657054 intron CG43980 + chr3L 21657114 intron CG43980 + chr3L_10_21655001 chr3L_21655001 RAL-707 1223 chr3L 21749319 21749345 chr3L 21754479 21754505 Doc 8 5160 1.5 3.5 2.5 2.3 5186 chr3L 21749319 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754505 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-707 1224 chr3L 21767035 21767069 chr3L 21767116 21767150 8 81 2.0 4.0 3.0 2.0 115 chr3L 21767035 intron Syn1 - chr3L 21767092 intron Syn1 - chr3L 21767150 intron Syn1 - chr3L_8_21765001 chr3L_21765001 RAL-707 1225 chr3L 21787617 21787638 chr3L 21787695 21787715 10 78 0.5 3.0 1.8 3.6 98 chr3L 21787617 intergenic not near genes chr3L 21787666 intergenic not near genes chr3L 21787715 intergenic not near genes chr3L_10_21785001 chr3L_21785001 RAL-707 1226 chr3L 21836726 21836758 chr3L 21836812 21836844 8 85 1.0 0.0 0.5 5.3 118 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836785 3` UTR P5CDh1 - chr3L 21836844 3` UTR P5CDh1 - chr3L_8_21835001 chr3L_21835001 RAL-707 1227 chr3L 21849505 21849530 chr3L 21849586 21849612 9 82 2.5 0.5 1.5 3.6 107 chr3L 21849505 intron mub + chr3L 21849558 intron mub + chr3L 21849612 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-707 1228 chr3L 21905330 21905361 chr3L 21905410 21905441 10 80 5.0 4.0 4.5 1.8 111 chr3L 21905330 intron mub + chr3L 21905386 intron mub + chr3L 21905441 intron mub + chr3L_10_21905001 chr3L_21905001 RAL-707 1229 chr3L 21970801 21970837 chr3L 21970892 21970927 14 91 4.5 1.0 2.8 3.7 126 chr3L 21970801 intergenic not near genes chr3L 21970864 intergenic not near genes chr3L 21970927 intergenic not near genes chr3L_14_21970001 chr3L_21970001 RAL-707 1230 chr3L 21992944 21992968 chr3L 21993023 21993047 5 78 1.0 1.0 1.0 2.5 103 chr3L 21992944 intergenic not near genes chr3L 21992996 intergenic not near genes chr3L 21993047 intergenic not near genes chr3L_5_21990001 chr3L_21990001 RAL-707 1231 chr3L 22010627 22010656 chr3L 22010776 22010805 10 149 2.0 2.0 2.0 3.3 178 chr3L 22010627 intergenic not near genes chr3L 22010716 intergenic not near genes chr3L 22010805 intergenic not near genes chr3L_10_22010001 chr3L_22010001 RAL-707 1232 chr3L 22012352 22012381 chr3L 22012506 22012536 13 155 2.5 2.5 2.5 3.7 184 chr3L 22012352 intergenic not near genes chr3L 22012444 intergenic not near genes chr3L 22012536 intergenic not near genes chr3L_13_22010001 chr3L_22010001 RAL-707 1233 chr3L 22023223 22023242 chr3L 22023314 22023333 7 91 1.0 2.0 1.5 2.8 110 chr3L 22023223 intergenic not near genes chr3L 22023278 intergenic not near genes chr3L 22023333 intergenic not near genes chr3L_7_22020001 chr3L_22020001 RAL-707 1234 chr3L 22099678 22099709 chr3L 22105864 22105895 3S18 7 6186 3.5 4.0 3.8 1.5 6217 chr3L 22099678 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-707 1235 chr3L 22124945 22124979 chr3L 22125101 22125135 11 156 1.0 1.5 1.2 5.0 190 chr3L 22124945 intergenic not near genes chr3L 22125040 intergenic not near genes chr3L 22125135 intergenic not near genes chr3L_11_22125001 chr3L_22125001 RAL-707 1236 chr3L 22130506 22130522 chr3L 22130651 22130668 6 146 1.5 4.5 3.0 1.5 162 chr3L 22130506 intergenic not near genes chr3L 22130587 intergenic not near genes chr3L 22130668 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-707 1237 chr3L 22169454 22169488 chr3L 22169547 22169581 9 93 0.5 5.0 2.8 2.4 127 chr3L 22169454 intron olf413 + chr3L 22169518 intron olf413 + chr3L 22169581 intron olf413 + chr3L_9_22165001 chr3L_22165001 RAL-707 1238 chr3L 22312281 22312309 chr3L 22312712 22312743 6 433 1.0 2.5 1.8 2.1 462 chr3L 22312281 intron Ten-m - chr3L 22312512 intron Ten-m - chr3L 22312743 intron Ten-m - chr3L_6_22310001 chr3L_22310001 RAL-707 1239 chr3L 22314889 22314909 chr3L 22315103 22315123 7 214 1.0 1.0 1.0 3.5 234 chr3L 22314889 intron Ten-m - chr3L 22315006 intron Ten-m - chr3L 22315123 intron Ten-m - chr3L_7_22315001 chr3L_22315001 RAL-707 1240 chr3L 22384175 22384204 chr3L 22384412 22384439 12 236 2.0 3.0 2.5 3.4 264 chr3L 22384175 intron Ten-m - chr3L 22384307 intron Ten-m - chr3L 22384439 intron Ten-m - chr3L_12_22380001 chr3L_22380001 RAL-707 1241 chr3L 22411372 22411398 chr3L 22411449 22411474 11 77 3.0 2.5 2.8 2.9 102 chr3L 22411372 intergenic not near genes chr3L 22411423 intergenic not near genes chr3L 22411474 intergenic not near genes chr3L_11_22410001 chr3L_22410001 RAL-707 1242 chr3L 22487124 22487156 chr3L 22487218 22487250 11 94 3.5 3.5 3.5 2.4 126 chr3L 22487124 intergenic not near genes chr3L 22487187 intergenic not near genes chr3L 22487250 intergenic not near genes chr3L_11_22485001 chr3L_22485001 RAL-707 1243 chr3L 22513015 22513023 chr3L 22513102 22513110 4 87 2.5 3.5 3.0 1.0 95 chr3L 22513015 intergenic not near genes chr3L 22513062 intergenic not near genes chr3L 22513110 intergenic not near genes chr3L_4_22510001 chr3L_22510001 RAL-707 1244 chr3L 22555775 22555793 chr3L 22563243 22563263 blood 4 7469 2.0 1.0 1.5 1.6 7488 chr3L 22555775 intergenic not near genes chr3L 22559519 intergenic not near genes chr3L 22563263 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-707 1245 chr3L 22577614 22577644 chr3L 22582402 22582432 Doc 9 4788 2.0 6.5 4.2 1.7 4818 chr3L 22577614 intergenic not near genes chr3L 22580023 intergenic not near genes chr3L 22582432 3` UTR CG14459 - chr3L_9_22580001 chr3L_22580001 RAL-707 1246 chr3L 22603923 22603948 chr3L 22604005 22604030 8 82 3.5 5.5 4.5 1.5 107 chr3L 22603923 intron CG14459 - chr3L 22603976 intron CG14459 - chr3L 22604030 intron CG14459 - chr3L_8_22600001 chr3L_22600001 RAL-707 1247 chr3L 22617188 22617223 chr3L 22624640 22624675 blood 14 7452 2.5 1.5 2.0 4.7 7487 chr3L 22617188 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624675 intron CG14459 - chr3L_14_22620001 chr3L_22620001 RAL-707 1248 chr3L 22675616 22675633 chr3L 22675715 22675732 5 99 3.0 3.5 3.2 1.2 116 chr3L 22675616 intron CG14457 + chr3L 22675674 intron CG14457 + chr3L 22675732 intron CG14457 + chr3L_5_22675001 chr3L_22675001 RAL-707 1249 chr3L 22761385 22761419 chr3L 22766819 22766853 Ivk 13 5434 3.0 1.0 2.0 4.3 5468 chr3L 22761385 intron SPoCk + chr3L 22764119 intron SPoCk + chr3L 22766853 intron SPoCk + chr3L_13_22760001 chr3L_22760001 RAL-707 1250 chr3L 22786064 22786097 chr3L 22788501 22788534 11 2437 8.0 16.0 12.0 0.8 2470 chr3L 22786064 3` UTR SPoCk + chr3L 22787299 3` UTR SPoCk + chr3L 22788534 exon CG14448 + chr3L_11_22785001 chr3L_22785001 RAL-707 1251 chr3L 22853464 22853723 chr3L 22853551 22853809 19 86 0.0 2.5 1.2 8.6 345 chr3L 22853464 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_19_22850001 chr3L_22850001 RAL-707 1252 chr3L 19220633 19220636 chr3L 22908066 22908066 12 3687432 10.5 16.0 13.2 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_12_21060001 chr3L_21060001 RAL-707 1253 chr3L 19220634 19220637 chr3L 22908067 22908067 8 3687432 10.0 15.5 12.8 0.6 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-707 1254 chr3L 22909034 22909054 chr3L 22909125 22909145 9 91 3.0 3.0 3.0 2.2 111 chr3L 22909034 intergenic CR45661 + chr3L 22909090 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-707 1255 chr3L 22989862 22989887 chr3L 22996835 22996861 297 7 6974 2.0 2.5 2.2 2.2 6999 chr3L 22989862 intergenic not near genes chr3L 22993362 intergenic not near genes chr3L 22996861 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-707 1256 chr3L 23428257 23428270 chr3L 23428337 23428349 5 80 1.5 2.5 2.0 1.7 92 chr3L 23428257 intergenic not near genes chr3L 23428303 intergenic not near genes chr3L 23428349 intergenic not near genes chr3L_5_23425001 chr3L_23425001 RAL-707 1257 chr3L 23532598 23532601 chr3L 23532688 23532691 5 90 3.0 2.5 2.8 1.3 93 chr3L 23532598 intergenic not near genes chr3L 23532644 intergenic not near genes chr3L 23532691 intergenic not near genes chr3L_5_23530001 chr3L_23530001 RAL-707 1258 chr3L 23536254 23536259 chr3L 23797106 23797110 gypsy8 4 260852 19.0 10.0 14.5 0.3 260856 chr3L 23536254 intergenic not near genes chr3L 23666682 intron AGO3 + chr3L 23797110 intergenic not near genes chr3L_4_23665001 chr3L_23665001 RAL-707 1259 chr3L 22908066 22908067 chr3L 23657063 23657066 11 748999 15.5 5.5 10.5 1.0 749000 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657066 intron AGO3 + chr3L_11_23280001 chr3L_23280001 RAL-707 1260 chr3L 23722736 23722744 chr3L 23722980 23722988 4 244 0.5 3.5 2.0 1.3 252 chr3L 23722736 intergenic not near genes chr3L 23722862 intergenic not near genes chr3L 23722988 intergenic not near genes chr3L_4_23720001 chr3L_23720001 RAL-707 1261 chr3L 23824029 23824048 chr3L 23824442 23824460 5 413 3.5 2.0 2.8 1.3 431 chr3L 23824029 intergenic not near genes chr3L 23824244 intergenic not near genes chr3L 23824460 intergenic not near genes chr3L_5_23820001 chr3L_23820001 RAL-707 1262 chr3L 23875536 23875554 chr3L 23875616 23875634 6 81 2.5 2.5 2.5 1.7 98 chr3L 23875536 intron CG40470 - chr3L 23875585 intron CG40470 - chr3L 23875634 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-707 1263 chr3L 24012411 24012431 chr3L 24020752 24020772 roo 5 8341 3.5 0.5 2.0 1.7 8361 chr3L 24012411 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020772 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-707 1264 chr3L 24168791 24168804 chr3L 24176119 24176129 ZAM 7 7327 5.0 2.0 3.5 1.6 7338 chr3L 24168791 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176129 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-707 1265 chr3L 24791902 24791925 chr3L 24796681 24796704 Doc 4 4779 0.0 1.5 0.8 2.2 4802 chr3L 24791902 intergenic not near genes chr3L 24794303 intergenic not near genes chr3L 24796704 intergenic not near genes chr3L_4_24790001 chr3L_24790001 RAL-707 1266 chr3L 25106584 25106609 chr3L 25106671 25106696 10 87 4.0 2.5 3.2 2.4 112 chr3L 25106584 intergenic not near genes chr3L 25106640 intergenic not near genes chr3L 25106696 intergenic not near genes chr3L_10_25105001 chr3L_25105001 RAL-707 1267 chr3L 25268557 25268584 chr3L 25268638 25268665 4 80 2.5 1.5 2.0 1.3 108 chr3L 25268557 intron CG40467 - chr3L 25268611 intron CG40467 - chr3L 25268665 intron CG40467 - chr3L_4_25265001 chr3L_25265001 RAL-707 1268 chr3L 25464086 25464099 chr3L 25464184 25464197 6 98 21.0 18.5 19.8 0.3 111 chr3L 25464086 intergenic not near genes chr3L 25464142 intergenic not near genes chr3L 25464197 intergenic not near genes chr3L_6_25460001 chr3L_25460001 RAL-707 1269 chr3L 25513582 25513606 chr3L 25513661 25513685 4 78 1.0 4.5 2.8 1.1 103 chr3L 25513582 intron CG41343 - chr3L 25513634 intron CG41343 - chr3L 25513685 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-707 1270 chr3L 25514881 25514899 chr3L 25514973 25514987 4 91 2.5 5.5 4.0 0.8 106 chr3L 25514881 intron CG41343 - chr3L 25514934 intron CG41343 - chr3L 25514987 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-707 1271 chr3L 25628501 25628528 chr3L 25633272 25633299 F-element 9 4771 2.0 3.5 2.8 2.4 4798 chr3L 25628501 intron CG41343 - chr3L 25630900 intron CG41343 - chr3L 25633299 intron CG41343 - chr3L_9_25630001 chr3L_25630001 RAL-707 1272 chr3L 25842482 25842495 chr3L 25842568 25842581 5 86 3.0 3.5 3.2 1.2 99 chr3L 25842482 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842581 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-707 1273 chr3L 25886867 25886892 chr3L 25887269 25887295 13 403 4.0 3.0 3.5 2.9 428 chr3L 25886867 intron CG40178 - chr3L 25887081 intron CG40178 - chr3L 25887295 intron CG40178 - chr3L_13_25885001 chr3L_25885001 RAL-707 1274 chr3L 24566080 24566085 chr3L 25889009 25889016 micropia 4 1322930 2.5 12.0 7.2 0.5 1322936 chr3L 24566080 intergenic not near genes chr3L 25227548 intergenic not near genes chr3L 25889016 intron CG40178 - chr3L_4_25225001 chr3L_25225001 RAL-707 1275 chr3L 26009426 26009447 chr3L 26009516 26009537 6 90 1.5 3.0 2.2 1.9 111 chr3L 26009426 intron CG40178 - chr3L 26009482 intron CG40178 - chr3L 26009537 intron CG40178 - chr3L_6_26005001 chr3L_26005001 RAL-707 1276 chr3L 22908067 22908067 chr3L 26014451 26014452 Porto1 4 3106384 15.5 4.5 10.0 0.4 3106385 chr3L 22908067 intergenic not near genes chr3L 24461260 intergenic not near genes chr3L 26014452 intergenic CG40178 - chr3L_4_24460001 chr3L_24460001 RAL-707 1277 chr3L 26694925 26694956 chr3L 26695005 26695036 7 77 4.0 1.5 2.8 1.8 111 chr3L 26694925 intergenic not near genes chr3L 26694980 intergenic not near genes chr3L 26695036 intergenic not near genes chr3L_7_26690001 chr3L_26690001 RAL-707 1278 chr3L 27167946 27167983 chr3L 27168066 27168103 10 120 2.5 3.0 2.8 2.6 157 chr3L 27167946 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168103 intergenic not near genes chr3L_10_27165001 chr3L_27165001 RAL-707 1279 chr3L 27368878 27368910 chr3L 27369423 27369455 8 544 1.5 1.0 1.2 3.6 577 chr3L 27368878 intron Dbp80 + chr3L 27369166 intron Dbp80 + chr3L 27369455 intron Dbp80 + chr3L_8_27365001 chr3L_27365001 RAL-707 1280 chr3L 22908066 22908067 chr3L 27698695 27698695 micropia 5 4790628 15.5 2.5 9.0 0.5 4790629 chr3L 22908066 intergenic not near genes chr3L 25303380 intron CG40467 - chr3L 27698695 intergenic not near genes chr3L_5_25300001 chr3L_25300001 RAL-707 1281 chr3L 27980726 27980728 chr3L 27985524 27985526 Doc 5 4798 0.0 5.0 2.5 1.4 4800 chr3L 27980726 intron CG17514 - chr3L 27983126 intron CG17514 - chr3L 27985526 intron CG17514 - chr3L_5_27980001 chr3L_27980001 RAL-707 1282 chr3R 1021784 1021795 chr3R 1022038 1022049 4 254 14.5 13.0 13.8 0.3 265 chr3R 1021784 intergenic not near genes chr3R 1021916 intergenic not near genes chr3R 1022049 intergenic not near genes chr3R_4_1020001 chr3R_1020001 RAL-707 1283 chr3R 1521166 1521183 chr3R 1521252 1521271 5 86 9.0 8.5 8.8 0.5 105 chr3R 1521166 intergenic not near genes chr3R 1521218 intergenic not near genes chr3R 1521271 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-707 1284 chr3R 1866436 1866443 chr3R 1866795 1866803 4 360 9.0 7.0 8.0 0.4 367 chr3R 1866436 intron CG42623 + chr3R 1866620 intron CG42623 + chr3R 1866803 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-707 1285 chr3R 1511854 1511859 chr3R 2516774 2516781 297 5 1004921 5.0 11.5 8.2 0.5 1004927 chr3R 1511854 intergenic not near genes chr3R 2014318 intergenic not near genes chr3R 2516781 intergenic not near genes chr3R_5_2010001 chr3R_2010001 RAL-707 1286 chr3R 2534134 2534167 chr3R 2541700 2541736 7 7568 13.5 16.5 15.0 0.4 7602 chr3R 2534134 intergenic not near genes chr3R 2537935 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-707 1287 chr3R 4012509 4012532 chr3R 4012598 4012621 5 89 3.5 2.0 2.8 1.3 112 chr3R 4012509 intergenic not near genes chr3R 4012565 intergenic not near genes chr3R 4012621 intergenic not near genes chr3R_5_4010001 chr3R_4010001 RAL-707 1288 chr3R 4206071 4206100 chr3R 4211644 4211675 mdg3 7 5575 2.0 1.0 1.5 2.8 5604 chr3R 4206071 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211675 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-707 1289 chr3R 4366756 4366781 chr3R 4375139 4375162 roo 7 8383 3.5 0.5 2.0 2.3 8406 chr3R 4366756 3` UTR CG1090 + chr3R 4370959 intergenic not near genes chr3R 4375162 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 RAL-707 1290 chr3R 4408413 4408439 chr3R 4412717 4412743 Juan 6 4304 4.0 1.0 2.5 1.7 4330 chr3R 4408413 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-707 1291 chr3R 4420804 4420836 chr3R 4420880 4420912 6 76 2.0 3.5 2.8 1.6 108 chr3R 4420804 intergenic not near genes chr3R 4420858 intergenic not near genes chr3R 4420912 intergenic not near genes chr3R_6_4420001 chr3R_4420001 RAL-707 1292 chr3R 4527589 4527613 chr3R 4528139 4528163 13 550 3.5 2.5 3.0 3.2 574 chr3R 4527589 intron CG34357 - chr3R 4527876 intron CG34357 - chr3R 4528163 intron CG34357 - chr3R_13_4525001 chr3R_4525001 RAL-707 1293 chr3R 4654856 4654888 chr3R 4654933 4654965 15 77 2.0 1.5 1.8 5.4 109 chr3R 4654856 5` UTR spartin + chr3R 4654910 5` UTR spartin + chr3R 4654965 5` UTR spartin + chr3R_15_4650001 chr3R_4650001 RAL-707 1294 chr3R 4753241 4753271 chr3R 4757544 4757574 F-element 13 4303 5.5 4.0 4.8 2.2 4333 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755408 intron,intron atms +,CG44098 - chr3R 4757574 intron,exon atms +,CG44098 - chr3R_13_4755001 chr3R_4755001 RAL-707 1295 chr3R 4861575 4861596 chr3R 4861655 4861677 8 80 3.5 6.0 4.8 1.4 102 chr3R 4861575 intron opa + chr3R 4861626 intron opa + chr3R 4861677 intron opa + chr3R_8_4860001 chr3R_4860001 RAL-707 1296 chr3R 4887479 4887509 chr3R 4894856 4894886 rover 8 7376 2.0 2.0 2.0 2.7 7407 chr3R 4887479 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894886 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-707 1297 chr3R 4943616 4943623 chr3R 4943721 4943728 4 105 6.0 2.5 4.2 0.8 112 chr3R 4943616 intron Cdep + chr3R 4943672 intron Cdep + chr3R 4943728 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-707 1298 chr3R 4948388 4948392 chr3R 4949010 4949014 4 622 9.0 14.5 11.8 0.3 626 chr3R 4948388 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948701 intergenic UbcD6 - chr3R 4949014 3` UTR UbcD6 - chr3R_4_4945001 chr3R_4945001 RAL-707 1299 chr3R 4966008 4966035 chr3R 4966100 4966127 4 92 2.0 3.0 2.5 1.1 119 chr3R 4966008 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966127 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-707 1300 chr3R 5000288 5000316 chr3R 5000395 5000423 10 107 3.0 1.5 2.2 3.1 135 chr3R 5000288 intron CG2022 - chr3R 5000356 intron CG2022 - chr3R 5000423 intron CG2022 - chr3R_10_5000001 chr3R_5000001 RAL-707 1301 chr3R 5038742 5038773 chr3R 5038824 5038855 15 82 6.5 3.0 4.8 2.6 113 chr3R 5038742 intergenic not near genes chr3R 5038798 intergenic not near genes chr3R 5038855 intergenic not near genes chr3R_15_5035001 chr3R_5035001 RAL-707 1302 chr3R 5045846 5045872 chr3R 5052948 5052974 HMS-Beagle 4 7102 3.0 1.0 2.0 1.3 7128 chr3R 5045846 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052974 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-707 1303 chr3R 5055360 5055382 chr3R 5055574 5055596 8 214 3.0 2.0 2.5 2.3 236 chr3R 5055360 intergenic not near genes chr3R 5055478 intergenic not near genes chr3R 5055596 intergenic not near genes chr3R_8_5055001 chr3R_5055001 RAL-707 1304 chr3R 5067980 5068012 chr3R 5073497 5073529 mdg3 15 5517 1.5 2.0 1.8 5.4 5549 chr3R 5067980 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_15_5070001 chr3R_5070001 RAL-707 1305 chr3R 5105560 5105575 chr3R 5105639 5105657 5 82 3.0 2.0 2.5 1.4 97 chr3R 5105560 intergenic not near genes chr3R 5105608 intergenic not near genes chr3R 5105657 intergenic not near genes chr3R_5_5105001 chr3R_5105001 RAL-707 1306 chr3R 5236222 5236245 chr3R 5236350 5236373 9 128 5.0 2.5 3.8 1.9 151 chr3R 5236222 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236298 3` UTR rtp - chr3R 5236373 3` UTR rtp - chr3R_9_5235001 chr3R_5235001 RAL-707 1307 chr3R 5250880 5250910 chr3R 5250992 5251018 4 110 5.5 3.5 4.5 0.7 138 chr3R 5250880 intron CG12163 - chr3R 5250949 intron CG12163 - chr3R 5251018 intron CG12163 - chr3R_4_5250001 chr3R_5250001 RAL-707 1308 chr3R 5278087 5278119 chr3R 5278168 5278200 15 81 3.5 1.5 2.5 4.3 113 chr3R 5278087 intron mtd - chr3R 5278144 intron mtd - chr3R 5278200 intron mtd - chr3R_15_5275001 chr3R_5275001 RAL-707 1309 chr3R 5338396 5338428 chr3R 5343573 5343604 Rt1c 14 5176 4.0 6.0 5.0 2.3 5208 chr3R 5338396 intron mtd - chr3R 5341000 intron mtd - chr3R 5343604 intron mtd - chr3R_14_5340001 chr3R_5340001 RAL-707 1310 chr3R 5385974 5386005 chr3R 5386145 5386176 8 171 2.5 2.5 2.5 2.3 202 chr3R 5385974 intron kkv - chr3R 5386075 intron kkv - chr3R 5386176 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-707 1311 chr3R 5445964 5445984 chr3R 5452424 5452444 Burdock 7 6460 3.0 3.0 3.0 1.8 6480 chr3R 5445964 intron CG14669 + chr3R 5449204 intron CG14669 + chr3R 5452444 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-707 1312 chr3R 5696129 5696140 chr3R 5696225 5696235 5 95 0.0 4.0 2.0 1.7 106 chr3R 5696129 intron plx + chr3R 5696182 intron plx + chr3R 5696235 intron plx + chr3R_5_5695001 chr3R_5695001 RAL-707 1313 chr3R 5712090 5712115 chr3R 5712178 5712202 8 88 0.5 2.5 1.5 3.2 112 chr3R 5712090 3` UTR plx + chr3R 5712146 3` UTR plx + chr3R 5712202 3` UTR plx + chr3R_8_5710001 chr3R_5710001 RAL-707 1314 chr3R 5746013 5746045 chr3R 5746254 5746286 pogo 6 241 3.5 4.5 4.0 1.2 273 chr3R 5746013 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-707 1315 chr3R 5747010 5747046 chr3R 5753201 5753237 diver 5 6191 1.0 1.5 1.2 2.3 6227 chr3R 5747010 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753237 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-707 1316 chr3R 5765642 5765657 chr3R 5765726 5765741 10 84 4.5 7.5 6.0 1.4 99 chr3R 5765642 intron CG2082 - chr3R 5765692 intron CG2082 - chr3R 5765741 intron CG2082 - chr3R_10_5765001 chr3R_5765001 RAL-707 1317 chr3R 5769232 5769262 chr3R 5769330 5769358 7 98 3.0 1.5 2.2 2.2 126 chr3R 5769232 intron CG2082 - chr3R 5769295 intron CG2082 - chr3R 5769358 intron CG2082 - chr3R_7_5765001 chr3R_5765001 RAL-707 1318 chr3R 5772376 5772409 chr3R 5772534 5772566 7 158 0.5 5.0 2.8 1.8 190 chr3R 5772376 intron CG2082 - chr3R 5772471 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-707 1319 chr3R 5775917 5775952 chr3R 5776565 5776598 12 648 2.0 3.0 2.5 3.4 681 chr3R 5775917 intron CG2082 - chr3R 5776258 intron CG2082 - chr3R 5776598 intron CG2082 - chr3R_12_5775001 chr3R_5775001 RAL-707 1320 chr3R 5809119 5809141 chr3R 5809360 5809380 pogo 6 241 3.0 2.5 2.8 1.6 261 chr3R 5809119 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809380 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-707 1321 chr3R 5822383 5822412 chr3R 5823550 5823578 1360 7 1167 3.5 4.5 4.0 1.4 1195 chr3R 5822383 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823578 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-707 1322 chr3R 5927561 5927587 chr3R 5927800 5927827 pogo 11 240 3.5 2.5 3.0 2.8 266 chr3R 5927561 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927827 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-707 1323 chr3R 5931851 5931872 chr3R 5931927 5931948 6 76 1.0 1.0 1.0 3.0 97 chr3R 5931851 intron CG34113 - chr3R 5931900 intron CG34113 - chr3R 5931948 intron CG34113 - chr3R_6_5930001 chr3R_5930001 RAL-707 1324 chr3R 5954323 5954358 chr3R 5954399 5954434 10 76 0.0 2.0 1.0 5.0 111 chr3R 5954323 intron CG34113 - chr3R 5954378 intron CG34113 - chr3R 5954434 intron CG34113 - chr3R_10_5950001 chr3R_5950001 RAL-707 1325 chr3R 5968178 5968197 chr3R 5968258 5968277 11 80 5.5 3.5 4.5 2.0 99 chr3R 5968178 intergenic not near genes chr3R 5968228 intergenic not near genes chr3R 5968277 intergenic not near genes chr3R_11_5965001 chr3R_5965001 RAL-707 1326 chr3R 5989347 5989366 chr3R 5989430 5989449 9 83 0.5 4.0 2.2 2.8 102 chr3R 5989347 5` UTR CR44927 + chr3R 5989398 5` UTR CR44927 + chr3R 5989449 5` UTR CR44927 + chr3R_9_5985001 chr3R_5985001 RAL-707 1327 chr3R 6015971 6015987 chr3R 6024470 6024488 Tirant 8 8501 4.0 0.0 2.0 2.7 8517 chr3R 6015971 intergenic not near genes chr3R 6020230 intergenic not near genes chr3R 6024488 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-707 1328 chr3R 6051883 6051905 chr3R 6051964 6051986 7 81 5.0 1.0 3.0 1.8 103 chr3R 6051883 intergenic not near genes chr3R 6051934 intergenic not near genes chr3R 6051986 intergenic not near genes chr3R_7_6050001 chr3R_6050001 RAL-707 1329 chr3R 6119126 6119148 chr3R 6119212 6119234 4 86 1.0 1.0 1.0 2.0 108 chr3R 6119126 intergenic not near genes chr3R 6119180 intergenic not near genes chr3R 6119234 intergenic not near genes chr3R_4_6115001 chr3R_6115001 RAL-707 1330 chr3R 6121174 6121185 chr3R 6121392 6121403 BS 5 218 0.0 2.5 1.2 2.3 229 chr3R 6121174 intergenic not near genes chr3R 6121288 intergenic not near genes chr3R 6121403 intergenic not near genes chr3R_5_6120001 chr3R_6120001 RAL-707 1331 chr3R 6158513 6158536 chr3R 6167095 6167118 Tirant 10 8582 2.5 6.5 4.5 1.8 8605 chr3R 6158513 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-707 1332 chr3R 6171147 6171180 chr3R 6171509 6171542 6 362 0.0 1.0 0.5 4.0 395 chr3R 6171147 intergenic not near genes chr3R 6171344 intergenic not near genes chr3R 6171542 intergenic not near genes chr3R_6_6170001 chr3R_6170001 RAL-707 1333 chr3R 6175173 6175199 chr3R 6182445 6182470 HMS-Beagle2 7 7272 3.0 1.0 2.0 2.3 7297 chr3R 6175173 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182470 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-707 1334 chr3R 6283302 6283332 chr3R 6283389 6283419 4 87 1.0 1.5 1.2 1.8 117 chr3R 6283302 intergenic not near genes chr3R 6283360 intergenic not near genes chr3R 6283419 intergenic not near genes chr3R_4_6280001 chr3R_6280001 RAL-707 1335 chr3R 6316776 6316811 chr3R 6316869 6316904 11 93 1.0 4.5 2.8 2.9 128 chr3R 6316776 intron Osi17 + chr3R 6316840 intron Osi17 + chr3R 6316904 intron Osi17 + chr3R_11_6315001 chr3R_6315001 RAL-707 1336 chr3R 6510031 6510053 chr3R 6515112 6515134 jockey 5 5081 1.5 1.5 1.5 2.0 5103 chr3R 6510031 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515134 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-707 1337 chr3R 6523315 6523347 chr3R 6523691 6523723 6 376 4.0 2.0 3.0 1.5 408 chr3R 6523315 intergenic not near genes chr3R 6523519 intergenic not near genes chr3R 6523723 intergenic not near genes chr3R_6_6520001 chr3R_6520001 RAL-707 1338 chr3R 6737504 6737529 chr3R 6739291 6739314 Doc 12 1787 1.0 4.0 2.5 3.4 1810 chr3R 6737504 intron pb - chr3R 6738409 intron pb - chr3R 6739314 intron pb - chr3R_12_6735001 chr3R_6735001 RAL-707 1339 chr3R 6773563 6773576 chr3R 6773652 6773665 5 89 5.0 3.0 4.0 1.0 102 chr3R 6773563 intron CR42721 + chr3R 6773614 intron CR42721 + chr3R 6773665 intron CR42721 + chr3R_5_6770001 chr3R_6770001 RAL-707 1340 chr3R 6782433 6782467 chr3R 6782511 6782546 8 79 3.0 2.0 2.5 2.3 113 chr3R 6782433 intergenic not near genes chr3R 6782490 intergenic not near genes chr3R 6782546 intergenic not near genes chr3R_8_6780001 chr3R_6780001 RAL-707 1341 chr3R 6918060 6918093 chr3R 6918138 6918171 10 78 0.5 1.0 0.8 5.6 111 chr3R 6918060 intron Antp - chr3R 6918116 intron Antp - chr3R 6918171 intron Antp - chr3R_10_6915001 chr3R_6915001 RAL-707 1342 chr3R 6958926 6958954 chr3R 6959137 6959165 5 211 3.0 2.5 2.8 1.3 239 chr3R 6958926 intron Antp - chr3R 6959046 intron Antp - chr3R 6959165 intron Antp - chr3R_5_6955001 chr3R_6955001 RAL-707 1343 chr3R 7095967 7095993 chr3R 7096052 7096077 11 85 3.0 2.0 2.5 3.1 110 chr3R 7095967 intergenic not near genes chr3R 7096022 intergenic not near genes chr3R 7096077 intergenic not near genes chr3R_11_7095001 chr3R_7095001 RAL-707 1344 chr3R 7103933 7103958 chr3R 7104032 7104056 12 99 3.5 2.5 3.0 3.0 123 chr3R 7103933 intron Alh - chr3R 7103994 intron Alh - chr3R 7104056 intron Alh - chr3R_12_7100001 chr3R_7100001 RAL-707 1345 chr3R 7106531 7106537 chr3R 7106610 7106618 4 80 1.5 1.5 1.5 1.6 87 chr3R 7106531 intron Alh - chr3R 7106574 intron Alh - chr3R 7106618 intron Alh - chr3R_4_7105001 chr3R_7105001 RAL-707 1346 chr3R 7206875 7206906 chr3R 7206964 7206995 10 88 1.0 1.5 1.2 4.5 120 chr3R 7206875 intergenic CG1288 - chr3R 7206935 intergenic CG1288 - chr3R 7206995 intergenic CG1288 - chr3R_10_7205001 chr3R_7205001 RAL-707 1347 chr3R 7372997 7373019 chr3R 7373076 7373098 5 78 0.5 2.5 1.5 2.0 101 chr3R 7372997 intergenic not near genes chr3R 7373048 intergenic not near genes chr3R 7373098 intergenic not near genes chr3R_5_7370001 chr3R_7370001 RAL-707 1348 chr3R 7385587 7385617 chr3R 7385663 7385693 11 76 1.0 2.5 1.8 3.9 106 chr3R 7385587 intergenic not near genes chr3R 7385640 intergenic not near genes chr3R 7385693 intergenic not near genes chr3R_11_7385001 chr3R_7385001 RAL-707 1349 chr3R 7464690 7464712 chr3R 7464776 7464798 5 86 4.0 2.5 3.2 1.2 108 chr3R 7464690 intergenic not near genes chr3R 7464744 intergenic not near genes chr3R 7464798 intergenic not near genes chr3R_5_7460001 chr3R_7460001 RAL-707 1350 chr3R 7485775 7485806 chr3R 7487295 7487325 5 1519 12.0 36.0 24.0 0.2 1550 chr3R 7485775 intergenic not near genes chr3R 7486550 intergenic alpha-Est10 - chr3R 7487325 exon alpha-Est10 - chr3R_5_7485001 chr3R_7485001 RAL-707 1351 chr3R 7496844 7496875 chr3R 7496921 7496952 8 77 3.5 2.5 3.0 2.0 108 chr3R 7496844 exon alpha-Est9 - chr3R 7496898 intron alpha-Est9 - chr3R 7496952 intron alpha-Est9 - chr3R_8_7495001 chr3R_7495001 RAL-707 1352 chr3R 7526289 7526323 chr3R 7526371 7526405 8 82 2.5 1.0 1.8 2.9 116 chr3R 7526289 intron alpha-Est6 - chr3R 7526347 intron alpha-Est6 - chr3R 7526405 intron alpha-Est6 - chr3R_8_7525001 chr3R_7525001 RAL-707 1353 chr3R 7527146 7527168 chr3R 7527227 7527249 7 81 3.0 0.0 1.5 2.8 103 chr3R 7527146 intron alpha-Est6 - chr3R 7527198 intron alpha-Est6 - chr3R 7527249 intron alpha-Est6 - chr3R_7_7525001 chr3R_7525001 RAL-707 1354 chr3R 7530079 7530098 chr3R 7530166 7530186 4 87 0.0 3.0 1.5 1.6 107 chr3R 7530079 intron Rtnl2 - chr3R 7530132 intron Rtnl2 - chr3R 7530186 5` UTR Rtnl2 - chr3R_4_7530001 chr3R_7530001 RAL-707 1355 chr3R 7532715 7532739 chr3R 7532794 7532818 8 79 2.0 2.0 2.0 2.7 103 chr3R 7532715 3` UTR alphaTub84D + chr3R 7532766 intergenic alphaTub84D + chr3R 7532818 intergenic alphaTub84D + chr3R_8_7530001 chr3R_7530001 RAL-707 1356 chr3R 7548603 7548635 chr3R 7548682 7548714 7 78 2.5 2.5 2.5 2.0 111 chr3R 7548603 intron alpha-Est1 - chr3R 7548658 intron alpha-Est1 - chr3R 7548714 intron alpha-Est1 - chr3R_7_7545001 chr3R_7545001 RAL-707 1357 chr3R 7635654 7635682 chr3R 7635736 7635765 8 82 2.0 2.0 2.0 2.7 111 chr3R 7635654 intron CG34127 - chr3R 7635710 intron CG34127 - chr3R 7635765 intron CG34127 - chr3R_8_7635001 chr3R_7635001 RAL-707 1358 chr3R 7677920 7677945 chr3R 7678033 7678058 7 113 0.5 1.0 0.8 3.9 138 chr3R 7677920 intron Nlg1 + chr3R 7677989 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-707 1359 chr3R 7694575 7694610 chr3R 7713636 7713671 invader3 5 19061 2.5 1.0 1.8 1.8 19096 chr3R 7694575 3` UTR Nlg1 + chr3R 7704123 intergenic not near genes chr3R 7713671 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-707 1360 chr3R 7729472 7729497 chr3R 7737410 7737435 Stalker2 10 7938 2.0 2.5 2.2 3.1 7963 chr3R 7729472 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_10_7730001 chr3R_7730001 RAL-707 1361 chr3R 7775915 7775948 chr3R 7775996 7776026 7 79 0.5 1.5 1.0 3.5 111 chr3R 7775915 intergenic not near genes chr3R 7775970 intergenic not near genes chr3R 7776026 intergenic not near genes chr3R_7_7775001 chr3R_7775001 RAL-707 1362 chr3R 7809919 7809951 chr3R 7809998 7810023 5 77 2.0 1.5 1.8 1.8 104 chr3R 7809919 5` UTR CG2993 - chr3R 7809971 5` UTR CG2993 - chr3R 7810023 intergenic CG2993 - chr3R_5_7805001 chr3R_7805001 RAL-707 1363 chr3R 7973321 7973344 chr3R 7974383 7974406 1360 5 1062 0.5 6.5 3.5 1.1 1085 chr3R 7973321 intergenic not near genes chr3R 7973864 intergenic not near genes chr3R 7974406 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-707 1364 chr3R 8013890 8013912 chr3R 8022854 8022877 9 8965 30.0 27.5 28.8 0.3 8987 chr3R 8013890 exon Pbp95 + chr3R 8018384 exon CG2747 - chr3R 8022877 exon CG2747 - chr3R_9_8015001 chr3R_8015001 RAL-707 1365 chr3R 8090276 8090303 chr3R 8090453 8090480 4 177 2.0 4.0 3.0 1.0 204 chr3R 8090276 5` UTR CR44330 + chr3R 8090378 intergenic CR44330 + chr3R 8090480 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-707 1366 chr3R 8101764 8101790 chr3R 8104848 8104874 G2 7 3084 3.5 2.0 2.8 1.8 3110 chr3R 8101764 exon CG7900 + chr3R 8103319 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-707 1367 chr3R 8196110 8196113 chr3R 12733785 12733787 4 4537674 6.5 9.5 8.0 0.4 4537677 chr3R 8196110 intergenic not near genes chr3R 10464948 3` UTR CR44955 - chr3R 12733787 intergenic not near genes chr3R_4_10460001 chr3R_10460001 RAL-707 1368 chr3R 8207569 8207582 chr3R 8208413 8208426 F-element 6 844 4.5 7.0 5.8 0.9 857 chr3R 8207569 intergenic not near genes chr3R 8207998 intergenic not near genes chr3R 8208426 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-707 1369 chr3R 8339242 8339247 chr3R 21907534 21907536 36 13568289 18.0 20.5 19.2 1.8 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_36_15120001 chr3R_15120001 RAL-707 1370 chr3R 8375134 8375162 chr3R 8375218 8375245 14 84 2.5 4.0 3.2 3.3 111 chr3R 8375134 intron CG45263 - chr3R 8375190 intron CG45263 - chr3R 8375245 intron CG45263 - chr3R_14_8375001 chr3R_8375001 RAL-707 1371 chr3R 8403009 8403035 chr3R 8412175 8412201 roo 11 9165 4.0 6.5 5.2 1.8 9192 chr3R 8403009 intron CG45263 - chr3R 8407605 intron CG45263 - chr3R 8412201 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-707 1372 chr3R 8469571 8469577 chr3R 8469649 8469657 4 80 2.5 5.0 3.8 0.8 86 chr3R 8469571 intron CG45263 - chr3R 8469614 intron CG45263 - chr3R 8469657 intron CG45263 - chr3R_4_8465001 chr3R_8465001 RAL-707 1373 chr3R 8552369 8552395 chr3R 8552449 8552474 6 80 4.0 2.5 3.2 1.4 105 chr3R 8552369 intergenic Or85d + chr3R 8552422 intergenic Or85d + chr3R 8552474 intergenic Or85d + chr3R_6_8550001 chr3R_8550001 RAL-707 1374 chr3R 8570476 8570509 chr3R 8575112 8575144 HMS-Beagle 7 4636 2.0 4.5 3.2 1.7 4668 chr3R 8570476 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575144 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-707 1375 chr3R 8601770 8601798 chr3R 8610922 8610950 roo 6 9153 2.5 4.5 3.5 1.3 9180 chr3R 8601770 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-707 1376 chr3R 8621542 8621553 chr3R 8621619 8621630 6 77 3.5 2.5 3.0 1.5 88 chr3R 8621542 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621630 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-707 1377 chr3R 8707362 8707384 chr3R 8709803 8709825 jockey 6 2441 4.0 5.5 4.8 1.0 2463 chr3R 8707362 intergenic not near genes chr3R 8708594 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-707 1378 chr3R 8740252 8740264 chr3R 8740341 8740353 5 89 5.0 3.5 4.2 1.0 101 chr3R 8740252 intron CG9801 - chr3R 8740302 intron CG9801 - chr3R 8740353 intron CG9801 - chr3R_5_8740001 chr3R_8740001 RAL-707 1379 chr3R 8743186 8743221 chr3R 8743268 8743303 15 82 3.0 4.5 3.8 3.1 117 chr3R 8743186 intron CG9801 - chr3R 8743244 intron CG9801 - chr3R 8743303 intron CG9801 - chr3R_15_8740001 chr3R_8740001 RAL-707 1380 chr3R 8894870 8894906 chr3R 8896026 8896062 1360 7 1156 3.5 1.5 2.5 2.0 1192 chr3R 8894870 intron pyd - chr3R 8895466 intron pyd - chr3R 8896062 intron pyd - chr3R_7_8895001 chr3R_8895001 RAL-707 1381 chr3R 9036378 9036397 chr3R 9036456 9036475 5 78 4.5 2.5 3.5 1.1 97 chr3R 9036378 intron neur - chr3R 9036426 intron neur - chr3R 9036475 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-707 1382 chr3R 9069494 9069515 chr3R 9069573 9069594 9 79 1.5 1.0 1.2 4.1 100 chr3R 9069494 3` UTR pum - chr3R 9069544 3` UTR pum - chr3R 9069594 3` UTR pum - chr3R_9_9065001 chr3R_9065001 RAL-707 1383 chr3R 9082046 9082068 chr3R 9082137 9082162 5 93 4.0 2.5 3.2 1.2 116 chr3R 9082046 intron pum - chr3R 9082104 intron pum - chr3R 9082162 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-707 1384 chr3R 9108867 9108881 chr3R 9108943 9108957 6 76 2.0 1.5 1.8 2.1 90 chr3R 9108867 intron pum - chr3R 9108912 intron pum - chr3R 9108957 intron pum - chr3R_6_9105001 chr3R_9105001 RAL-707 1385 chr3R 9111456 9111488 chr3R 9111551 9111582 9 95 2.5 1.5 2.0 3.0 126 chr3R 9111456 intron pum - chr3R 9111519 intron pum - chr3R 9111582 intron pum - chr3R_9_9110001 chr3R_9110001 RAL-707 1386 chr3R 9141160 9141191 chr3R 9141249 9141279 5 88 0.5 3.0 1.8 1.8 119 chr3R 9141160 intron pum - chr3R 9141220 intron pum - chr3R 9141279 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-707 1387 chr3R 9298231 9298256 chr3R 9298318 9298343 7 87 2.0 3.0 2.5 2.0 112 chr3R 9298231 intron CG8861 - chr3R 9298287 intron CG8861 - chr3R 9298343 intron CG8861 - chr3R_7_9295001 chr3R_9295001 RAL-707 1388 chr3R 9319572 9319605 chr3R 9320007 9320040 jockey 10 434 3.5 3.5 3.5 2.2 468 chr3R 9319572 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320040 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-707 1389 chr3R 9361815 9361828 chr3R 9362056 9362069 pogo 6 241 1.5 1.0 1.2 2.7 254 chr3R 9361815 3` UTR CG45050 + chr3R 9361942 3` UTR CG45050 + chr3R 9362069 3` UTR CG45050 + chr3R_6_9360001 chr3R_9360001 RAL-707 1390 chr3R 9422381 9422411 chr3R 9422475 9422505 9 94 3.5 3.0 3.2 2.1 124 chr3R 9422381 intron ps + chr3R 9422443 intron ps + chr3R 9422505 intron ps + chr3R_9_9420001 chr3R_9420001 RAL-707 1391 chr3R 9440344 9440356 chr3R 9440430 9440442 5 86 5.5 5.0 5.2 0.8 98 chr3R 9440344 intron ps + chr3R 9440393 intron ps + chr3R 9440442 intron ps + chr3R_5_9440001 chr3R_9440001 RAL-707 1392 chr3R 9529341 9529365 chr3R 9529424 9529447 7 83 1.5 0.5 1.0 3.5 106 chr3R 9529341 3` UTR by - chr3R 9529394 3` UTR by - chr3R 9529447 3` UTR by - chr3R_7_9525001 chr3R_9525001 RAL-707 1393 chr3R 9620954 9620956 chr3R 21907534 21907536 12 12286580 7.0 20.5 13.8 0.8 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_12_15760001 chr3R_15760001 RAL-707 1394 chr3R 9644585 9644610 chr3R 9644666 9644691 8 81 3.5 2.5 3.0 2.0 106 chr3R 9644585 intron Dh44 + chr3R 9644638 intron Dh44 + chr3R 9644691 intron Dh44 + chr3R_8_9640001 chr3R_9640001 RAL-707 1395 chr3R 9699978 9700000 chr3R 9700067 9700089 1360 5 89 3.5 4.5 4.0 1.0 111 chr3R 9699978 intron Unc-115a - chr3R 9700034 intron Unc-115a - chr3R 9700089 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-707 1396 chr3R 9765921 9765940 chr3R 9765997 9766016 6 76 2.0 3.0 2.5 1.7 95 chr3R 9765921 3` UTR CG8478 + chr3R 9765968 3` UTR CG8478 + chr3R 9766016 3` UTR CG8478 + chr3R_6_9765001 chr3R_9765001 RAL-707 1397 chr3R 9834515 9834530 chr3R 9834859 9834874 4 344 0.0 4.0 2.0 1.3 359 chr3R 9834515 intron Teh1 - chr3R 9834694 intron Teh1 - chr3R 9834874 intron Teh1 - chr3R_4_9830001 chr3R_9830001 RAL-707 1398 chr3R 9857810 9857831 chr3R 9858250 9858271 8 440 2.5 2.0 2.2 2.5 461 chr3R 9857810 intron Teh1 - chr3R 9858040 intron Teh1 - chr3R 9858271 intron Teh1 - chr3R_8_9855001 chr3R_9855001 RAL-707 1399 chr3R 9936876 9936912 chr3R 9936952 9936988 16 76 2.5 3.5 3.0 4.0 112 chr3R 9936876 intron Glut4EF + chr3R 9936932 intron Glut4EF + chr3R 9936988 intron Glut4EF + chr3R_16_9935001 chr3R_9935001 RAL-707 1400 chr3R 10306960 10306984 chr3R 10312219 10312243 7 5259 34.0 17.5 25.8 0.3 5283 chr3R 10306960 exon CG43143 + chr3R 10309602 exon CG6293 - chr3R 10312243 3` UTR Bruce - chr3R_7_10305001 chr3R_10305001 RAL-707 1401 chr3R 10394065 10394098 chr3R 10394164 10394197 14 99 4.0 2.5 3.2 3.3 132 chr3R 10394065 intron cwo + chr3R 10394131 intron cwo + chr3R 10394197 intron cwo + chr3R_14_10390001 chr3R_10390001 RAL-707 1402 chr3R 10427424 10427426 chr3R 10427533 10427536 4 110 5.0 0.0 2.5 1.1 112 chr3R 10427424 intergenic not near genes chr3R 10427480 intergenic not near genes chr3R 10427536 intergenic not near genes chr3R_4_10425001 chr3R_10425001 RAL-707 1403 chr3R 10430679 10430704 chr3R 10430767 10430792 13 88 2.0 5.5 3.8 2.7 113 chr3R 10430679 intergenic not near genes chr3R 10430736 intergenic not near genes chr3R 10430792 intergenic not near genes chr3R_13_10430001 chr3R_10430001 RAL-707 1404 chr3R 10596631 10596648 chr3R 10596707 10596724 4 76 2.0 3.5 2.8 1.1 93 chr3R 10596631 intron hth - chr3R 10596678 intron hth - chr3R 10596724 intron hth - chr3R_4_10595001 chr3R_10595001 RAL-707 1405 chr3R 10723764 10723791 chr3R 10723856 10723883 10 92 3.0 0.5 1.8 3.6 119 chr3R 10723764 intergenic not near genes chr3R 10723824 intergenic not near genes chr3R 10723883 intergenic not near genes chr3R_10_10720001 chr3R_10720001 RAL-707 1406 chr3R 10727644 10727679 chr3R 10727724 10727759 14 79 1.0 5.5 3.2 3.3 115 chr3R 10727644 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_14_10725001 chr3R_10725001 RAL-707 1407 chr3R 10732326 10732343 chr3R 10733198 10733215 5 872 3.5 2.0 2.8 1.3 889 chr3R 10732326 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-707 1408 chr3R 10868599 10868618 chr3R 10868677 10868696 4 78 1.5 3.5 2.5 1.1 97 chr3R 10868599 5` UTR SelR - chr3R 10868648 intergenic SelR -,Tsp86D + chr3R 10868696 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-707 1409 chr3R 10904914 10904936 chr3R 10905117 10905140 7 204 2.0 3.0 2.5 2.0 226 chr3R 10904914 intergenic not near genes chr3R 10905027 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_7_10905001 chr3R_10905001 RAL-707 1410 chr3R 10906831 10906852 chr3R 10906907 10906928 4 76 2.0 1.5 1.8 1.4 97 chr3R 10906831 intergenic not near genes chr3R 10906880 intergenic not near genes chr3R 10906928 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-707 1411 chr3R 10919685 10919715 chr3R 10919763 10919793 5 78 2.0 1.0 1.5 2.0 108 chr3R 10919685 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-707 1412 chr3R 10920045 10920073 chr3R 10920123 10920151 4 78 1.0 1.0 1.0 2.0 106 chr3R 10920045 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920151 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-707 1413 chr3R 10957870 10957880 chr3R 10963259 10963267 Rt1c 4 5388 4.5 4.5 4.5 0.7 5397 chr3R 10957870 intergenic not near genes chr3R 10960568 intergenic not near genes chr3R 10963267 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-707 1414 chr3R 10971483 10971502 chr3R 10971571 10971592 7 90 4.0 2.5 3.2 1.7 109 chr3R 10971483 intergenic not near genes chr3R 10971538 intergenic not near genes chr3R 10971592 intergenic not near genes chr3R_7_10970001 chr3R_10970001 RAL-707 1415 chr3R 11085462 11085491 chr3R 11085539 11085568 8 77 0.0 3.0 1.5 3.2 106 chr3R 11085462 3` UTR CR44940 - chr3R 11085515 intergenic CR44940 - chr3R 11085568 intergenic CR44940 - chr3R_8_11085001 chr3R_11085001 RAL-707 1416 chr3R 11102325 11102354 chr3R 11102405 11102429 8 79 4.0 4.5 4.2 1.5 104 chr3R 11102325 intergenic not near genes chr3R 11102377 intergenic not near genes chr3R 11102429 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-707 1417 chr3R 11167111 11167141 chr3R 11167316 11167346 11 205 2.0 4.0 3.0 2.8 235 chr3R 11167111 exon Ugt86De - chr3R 11167228 exon Ugt86De - chr3R 11167346 exon Ugt86De - chr3R_11_11165001 chr3R_11165001 RAL-707 1418 chr3R 11197996 11198018 chr3R 11198095 11198117 6 99 2.0 4.5 3.2 1.4 121 chr3R 11197996 intron cu + chr3R 11198056 intron cu + chr3R 11198117 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-707 1419 chr3R 11263402 11263426 chr3R 11263486 11263510 5 84 2.0 3.0 2.5 1.4 108 chr3R 11263402 intergenic not near genes chr3R 11263456 intergenic not near genes chr3R 11263510 intergenic not near genes chr3R_5_11260001 chr3R_11260001 RAL-707 1420 chr3R 11310601 11310625 chr3R 11310696 11310720 8 95 2.0 3.5 2.8 2.1 119 chr3R 11310601 intergenic CR45055 + chr3R 11310660 intergenic CR45055 + chr3R 11310720 5` UTR CR45055 + chr3R_8_11310001 chr3R_11310001 RAL-707 1421 chr3R 11342542 11342574 chr3R 11342618 11342649 8 75 1.5 1.5 1.5 3.2 107 chr3R 11342542 intron pros + chr3R 11342596 intron pros + chr3R 11342649 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-707 1422 chr3R 11379239 11379269 chr3R 11388394 11388424 roo 10 9155 2.0 2.5 2.2 3.1 9185 chr3R 11379239 intron pros + chr3R 11383832 intron pros + chr3R 11388424 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-707 1423 chr3R 11476954 11476970 chr3R 11477056 11477072 6 102 0.5 1.5 1.0 3.0 118 chr3R 11476954 intergenic not near genes chr3R 11477013 intergenic not near genes chr3R 11477072 intergenic not near genes chr3R_6_11475001 chr3R_11475001 RAL-707 1424 chr3R 11491607 11491630 chr3R 11491683 11491706 9 76 1.5 0.5 1.0 4.5 99 chr3R 11491607 intergenic not near genes chr3R 11491656 intergenic not near genes chr3R 11491706 intergenic not near genes chr3R_9_11490001 chr3R_11490001 RAL-707 1425 chr3R 11664790 11664814 chr3R 11664882 11664905 9 92 2.0 4.0 3.0 2.2 115 chr3R 11664790 intron CG42327 + chr3R 11664848 intron CG42327 + chr3R 11664905 intron CG42327 + chr3R_9_11660001 chr3R_11660001 RAL-707 1426 chr3R 11694724 11694751 chr3R 11694817 11694844 13 93 3.0 1.5 2.2 4.1 120 chr3R 11694724 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_13_11690001 chr3R_11690001 RAL-707 1427 chr3R 11734162 11734187 chr3R 11734281 11734306 8 119 0.0 2.5 1.2 3.6 144 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_8_11730001 chr3R_11730001 RAL-707 1428 chr3R 11840054 11840087 chr3R 11840151 11840182 11 96 3.5 0.0 1.8 3.9 128 chr3R 11840054 intron CG6959 - chr3R 11840118 intron CG6959 - chr3R 11840182 intron CG6959 - chr3R_11_11840001 chr3R_11840001 RAL-707 1429 chr3R 11841064 11841095 chr3R 11846255 11846286 BS 12 5191 1.5 2.0 1.8 4.3 5222 chr3R 11841064 intron CG6959 - chr3R 11843675 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_12_11840001 chr3R_11840001 RAL-707 1430 chr3R 11853434 11853472 chr3R 11853583 11853634 7 155 0.5 0.0 0.2 5.8 200 chr3R 11853434 intron CG6959 - chr3R 11853534 intron CG6959 - chr3R 11853634 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-707 1431 chr3R 11916425 11916457 chr3R 11916504 11916536 10 79 1.5 1.0 1.2 4.5 111 chr3R 11916425 intron Cad87A - chr3R 11916480 intron Cad87A - chr3R 11916536 intron Cad87A - chr3R_10_11915001 chr3R_11915001 RAL-707 1432 chr3R 11965176 11965213 chr3R 11965417 11965454 14 241 0.0 3.0 1.5 5.6 278 chr3R 11965176 3` UTR CG12213 - chr3R 11965315 3` UTR CG12213 - chr3R 11965454 exon CG12213 - chr3R_14_11965001 chr3R_11965001 RAL-707 1433 chr3R 12022887 12022910 chr3R 12025063 12025087 pogo 8 2177 3.5 3.5 3.5 1.8 2200 chr3R 12022887 intergenic not near genes chr3R 12023987 intergenic not near genes chr3R 12025087 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-707 1434 chr3R 12111903 12111924 chr3R 12111979 12112000 7 76 0.0 1.0 0.5 4.7 97 chr3R 12111903 intergenic dpr17 + chr3R 12111952 intergenic not near genes chr3R 12112000 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-707 1435 chr3R 12154029 12154062 chr3R 12154456 12154488 4 426 19.5 16.0 17.8 0.2 459 chr3R 12154029 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154488 intron dpr15 - chr3R_4_12150001 chr3R_12150001 RAL-707 1436 chr3R 12214349 12214371 chr3R 12214435 12214460 5 90 2.5 3.0 2.8 1.3 111 chr3R 12214349 3` UTR CG4848 - chr3R 12214404 3` UTR CG4848 - chr3R 12214460 3` UTR CG4848 - chr3R_5_12210001 chr3R_12210001 RAL-707 1437 chr3R 12585753 12585773 chr3R 12585833 12585853 5 80 2.5 2.0 2.2 1.6 100 chr3R 12585753 intron Octbeta2R - chr3R 12585803 intron Octbeta2R - chr3R 12585853 intron Octbeta2R - chr3R_5_12585001 chr3R_12585001 RAL-707 1438 chr3R 12720808 12720836 chr3R 12720981 12721009 6 172 6.0 1.5 3.8 1.2 201 chr3R 12720808 intron Men - chr3R 12720908 intron Men - chr3R 12721009 intron Men - chr3R_6_12720001 chr3R_12720001 RAL-707 1439 chr3R 12733477 12733509 chr3R 12733552 12733585 7 77 0.5 1.5 1.0 3.5 108 chr3R 12733477 intergenic not near genes chr3R 12733531 intergenic not near genes chr3R 12733585 intergenic not near genes chr3R_7_12730001 chr3R_12730001 RAL-707 1440 chr3R 12801247 12801273 chr3R 12801336 12801362 6 88 2.5 1.0 1.8 2.1 115 chr3R 12801247 intergenic not near genes chr3R 12801304 intergenic not near genes chr3R 12801362 intergenic not near genes chr3R_6_12800001 chr3R_12800001 RAL-707 1441 chr3R 12823791 12823818 chr3R 12823870 12823897 6 79 0.5 4.5 2.5 1.7 106 chr3R 12823791 intergenic not near genes chr3R 12823844 intergenic not near genes chr3R 12823897 intergenic not near genes chr3R_6_12820001 chr3R_12820001 RAL-707 1442 chr3R 12876966 12876984 chr3R 12877047 12877067 9 82 0.5 1.5 1.0 4.5 101 chr3R 12876966 intergenic not near genes chr3R 12877016 intergenic not near genes chr3R 12877067 intergenic not near genes chr3R_9_12875001 chr3R_12875001 RAL-707 1443 chr3R 12894595 12894612 chr3R 12894708 12894725 6 112 0.0 0.5 0.2 5.0 130 chr3R 12894595 intergenic not near genes chr3R 12894660 intergenic not near genes chr3R 12894725 intergenic not near genes chr3R_6_12890001 chr3R_12890001 RAL-707 1444 chr3R 12920151 12920186 chr3R 12925354 12925389 copia 9 5203 2.5 2.0 2.2 2.8 5238 chr3R 12920151 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-707 1445 chr3R 13067097 13067135 chr3R 13067173 13067211 5 76 0.0 0.5 0.2 4.2 114 chr3R 13067097 intron sim + chr3R 13067154 intron sim + chr3R 13067211 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-707 1446 chr3R 13104419 13104419 chr3R 21907535 21907536 4 8803116 25.5 20.5 23.0 0.2 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-707 1447 chr3R 13104420 13104421 chr3R 21907534 21907535 4 8803114 25.0 20.5 22.8 0.2 8803115 chr3R 13104420 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-707 1448 chr3R 13114405 13114428 chr3R 13114499 13114522 8 94 1.5 4.0 2.8 2.1 117 chr3R 13114405 intron timeout + chr3R 13114464 intron timeout + chr3R 13114522 intron timeout + chr3R_8_13110001 chr3R_13110001 RAL-707 1449 chr3R 13143039 13143066 chr3R 13148615 13148642 mdg3 8 5576 4.5 4.5 4.5 1.5 5603 chr3R 13143039 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-707 1450 chr3R 13173442 13173471 chr3R 13173524 13173552 5 82 1.5 4.0 2.8 1.3 110 chr3R 13173442 intergenic not near genes chr3R 13173497 intergenic not near genes chr3R 13173552 intergenic not near genes chr3R_5_13170001 chr3R_13170001 RAL-707 1451 chr3R 13195950 13195982 chr3R 13196045 13196077 11 95 4.0 3.5 3.8 2.3 127 chr3R 13195950 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_11_13195001 chr3R_13195001 RAL-707 1452 chr3R 13248652 13248679 chr3R 13248751 13248769 8 98 4.0 3.0 3.5 1.8 117 chr3R 13248652 intron Ace - chr3R 13248710 intron Ace - chr3R 13248769 intron Ace - chr3R_8_13245001 chr3R_13245001 RAL-707 1453 chr3R 13260727 13260746 chr3R 13260858 13260877 11 131 3.0 3.5 3.2 2.6 150 chr3R 13260727 intron CG11686 + chr3R 13260802 intron CG11686 + chr3R 13260877 intron CG11686 + chr3R_11_13260001 chr3R_13260001 RAL-707 1454 chr3R 13212795 13212818 chr3R 13264773 13264796 6 51978 19.0 31.0 25.0 0.2 52001 chr3R 13212795 intron CG8483 - chr3R 13238796 intron Ace - chr3R 13264796 exon Su(var)3-7 + chr3R_6_13235001 chr3R_13235001 RAL-707 1455 chr3R 13272060 13272080 chr3R 13272145 13272165 5 85 0.0 0.0 0.0 5.0 105 chr3R 13272060 intergenic CG8449 - chr3R 13272112 intergenic CG8449 - chr3R 13272165 intergenic CG8449 - chr3R_5_13270001 chr3R_13270001 RAL-707 1456 chr3R 13274210 13274249 chr3R 13274289 13274328 11 79 2.5 3.5 3.0 2.8 118 chr3R 13274210 intergenic not near genes chr3R 13274269 intergenic not near genes chr3R 13274328 intergenic not near genes chr3R_11_13270001 chr3R_13270001 RAL-707 1457 chr3R 13306129 13306151 chr3R 13306516 13306538 14 387 1.0 4.0 2.5 4.0 409 chr3R 13306129 intron CG32473 + chr3R 13306334 intron CG32473 + chr3R 13306538 intron CG32473 + chr3R_14_13305001 chr3R_13305001 RAL-707 1458 chr3R 13314093 13314123 chr3R 13318880 13318911 Doc 12 4788 2.0 1.0 1.5 4.8 4818 chr3R 13314093 intergenic not near genes chr3R 13316502 intergenic not near genes chr3R 13318911 intergenic CG45080 - chr3R_12_13315001 chr3R_13315001 RAL-707 1459 chr3R 13323964 13323977 chr3R 13324075 13324088 5 111 4.5 0.5 2.5 1.4 124 chr3R 13323964 intergenic not near genes chr3R 13324026 intergenic not near genes chr3R 13324088 intergenic not near genes chr3R_5_13320001 chr3R_13320001 RAL-707 1460 chr3R 13326935 13326958 chr3R 13327030 13327052 6 94 1.5 0.0 0.8 3.3 117 chr3R 13326935 intergenic not near genes chr3R 13326994 intergenic not near genes chr3R 13327052 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-707 1461 chr3R 13356091 13356108 chr3R 13356176 13356193 6 85 3.0 4.0 3.5 1.3 102 chr3R 13356091 intergenic not near genes chr3R 13356142 intergenic not near genes chr3R 13356193 intergenic not near genes chr3R_6_13355001 chr3R_13355001 RAL-707 1462 chr3R 13391633 13391667 chr3R 13391711 13391745 15 78 2.5 2.5 2.5 4.3 112 chr3R 13391633 intron CCHa2 - chr3R 13391689 intron CCHa2 - chr3R 13391745 intron CCHa2 - chr3R_15_13390001 chr3R_13390001 RAL-707 1463 chr3R 13511823 13511851 chr3R 13511899 13511931 13 79 1.0 1.0 1.0 6.5 108 chr3R 13511823 intergenic not near genes chr3R 13511877 intergenic not near genes chr3R 13511931 intergenic not near genes chr3R_13_13510001 chr3R_13510001 RAL-707 1464 chr3R 13554155 13554168 chr3R 13554233 13554247 5 78 4.5 4.0 4.2 1.0 92 chr3R 13554155 intergenic not near genes chr3R 13554201 intergenic not near genes chr3R 13554247 intergenic not near genes chr3R_5_13550001 chr3R_13550001 RAL-707 1465 chr3R 13599078 13599105 chr3R 13599165 13599192 4 87 2.5 0.0 1.2 1.8 114 chr3R 13599078 intergenic not near genes chr3R 13599135 intergenic not near genes chr3R 13599192 intergenic not near genes chr3R_4_13595001 chr3R_13595001 RAL-707 1466 chr3R 13625702 13625724 chr3R 13625783 13625805 7 81 1.0 1.0 1.0 3.5 103 chr3R 13625702 intergenic not near genes chr3R 13625754 intergenic not near genes chr3R 13625805 intergenic not near genes chr3R_7_13625001 chr3R_13625001 RAL-707 1467 chr3R 13659720 13659737 chr3R 13659826 13659843 4 106 0.0 0.0 0.0 4.0 123 chr3R 13659720 intron Hrb87F - chr3R 13659782 intron Hrb87F - chr3R 13659843 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-707 1468 chr3R 13672941 13672973 chr3R 13673019 13673051 10 78 0.5 3.0 1.8 3.6 110 chr3R 13672941 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673051 intron Task6 - chr3R_10_13670001 chr3R_13670001 RAL-707 1469 chr3R 13692785 13692812 chr3R 13692863 13692889 17 78 2.0 3.0 2.5 4.9 104 chr3R 13692785 3` UTR flfl + chr3R 13692837 3` UTR flfl + chr3R 13692889 3` UTR flfl + chr3R_17_13690001 chr3R_13690001 RAL-707 1470 chr3R 13693026 13693030 chr3R 21907534 21907535 8 8214507 15.5 20.5 18.0 0.4 8214509 chr3R 13693026 3` UTR flfl + chr3R 17800280 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-707 1471 chr3R 13744185 13744219 chr3R 13744331 13744365 6 146 2.5 2.0 2.2 1.9 180 chr3R 13744185 intron CG34383 + chr3R 13744275 intron CG34383 + chr3R 13744365 intron CG34383 + chr3R_6_13740001 chr3R_13740001 RAL-707 1472 chr3R 13782052 13782084 chr3R 13782133 13782165 11 81 1.0 0.5 0.8 6.1 113 chr3R 13782052 exon CG9286 + chr3R 13782108 intergenic CG9286 +,Dip-B + chr3R 13782165 intergenic CG9286 +,Dip-B + chr3R_11_13780001 chr3R_13780001 RAL-707 1473 chr3R 13803896 13803908 chr3R 13804117 13804126 6 220 0.0 0.0 0.0 6.0 230 chr3R 13803896 intergenic not near genes chr3R 13804011 intergenic not near genes chr3R 13804126 intergenic not near genes chr3R_6_13800001 chr3R_13800001 RAL-707 1474 chr3R 13850333 13850341 chr3R 13850421 13850429 5 87 0.0 6.0 3.0 1.2 96 chr3R 13850333 intergenic not near genes chr3R 13850381 intergenic not near genes chr3R 13850429 intergenic not near genes chr3R_5_13850001 chr3R_13850001 RAL-707 1475 chr3R 13863685 13863716 chr3R 13863773 13863804 11 88 1.0 3.5 2.2 3.4 119 chr3R 13863685 intergenic not near genes chr3R 13863744 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_11_13860001 chr3R_13860001 RAL-707 1476 chr3R 13880546 13880579 chr3R 13880667 13880700 12 120 0.5 3.5 2.0 4.0 154 chr3R 13880546 intergenic not near genes chr3R 13880623 intergenic not near genes chr3R 13880700 intergenic not near genes chr3R_12_13880001 chr3R_13880001 RAL-707 1477 chr3R 13896794 13896813 chr3R 13896946 13896965 8 152 7.0 2.0 4.5 1.5 171 chr3R 13896794 intergenic not near genes chr3R 13896880 intergenic not near genes chr3R 13896965 intergenic not near genes chr3R_8_13895001 chr3R_13895001 RAL-707 1478 chr3R 13984428 13984451 chr3R 13984545 13984568 12 117 3.0 5.0 4.0 2.4 140 chr3R 13984428 intron rdx - chr3R 13984498 intron rdx - chr3R 13984568 intron rdx - chr3R_12_13980001 chr3R_13980001 RAL-707 1479 chr3R 14011193 14011211 chr3R 14011270 14011289 4 78 2.5 4.0 3.2 1.0 96 chr3R 14011193 intron rdx - chr3R 14011241 intron rdx - chr3R 14011289 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-707 1480 chr3R 14058124 14058150 chr3R 14058244 14058270 4 120 1.0 1.0 1.0 2.0 146 chr3R 14058124 intron foxo + chr3R 14058197 intron foxo + chr3R 14058270 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-707 1481 chr3R 14067144 14067154 chr3R 14067223 14067233 4 78 2.5 0.5 1.5 1.6 89 chr3R 14067144 exon foxo + chr3R 14067188 intron foxo + chr3R 14067233 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-707 1482 chr3R 14068588 14068614 chr3R 14068673 14068699 7 85 1.0 1.5 1.2 3.2 111 chr3R 14068588 intron foxo + chr3R 14068644 intron foxo + chr3R 14068699 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-707 1483 chr3R 14076255 14076278 chr3R 14076410 14076433 7 155 13.5 13.5 13.5 0.5 178 chr3R 14076255 intron foxo + chr3R 14076344 intron foxo + chr3R 14076433 intron foxo + chr3R_7_14075001 chr3R_14075001 RAL-707 1484 chr3R 14075659 14075669 chr3R 14076721 14076731 4 1062 1.0 15.5 8.2 0.4 1072 chr3R 14075659 intron foxo + chr3R 14076195 intron foxo + chr3R 14076731 intron foxo + chr3R_4_14075001 chr3R_14075001 RAL-707 1485 chr3R 14180811 14180828 chr3R 14185576 14185593 F-element 7 4764 5.0 0.0 2.5 2.0 4782 chr3R 14180811 intron Dop1R1 - chr3R 14183202 intron Dop1R1 - chr3R 14185593 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-707 1486 chr3R 14208701 14208730 chr3R 14208859 14208888 6 158 2.0 4.5 3.2 1.4 187 chr3R 14208701 intron Dop1R1 - chr3R 14208794 intron Dop1R1 - chr3R 14208888 intron Dop1R1 - chr3R_6_14205001 chr3R_14205001 RAL-707 1487 chr3R 14245611 14245643 chr3R 14245742 14245774 9 131 2.0 3.0 2.5 2.6 163 chr3R 14245611 intergenic CG9616 - chr3R 14245692 intergenic CG9616 - chr3R 14245774 intergenic CG9616 - chr3R_9_14245001 chr3R_14245001 RAL-707 1488 chr3R 14246400 14246415 chr3R 14247896 14247911 jockey 6 1495 0.5 3.5 2.0 2.0 1511 chr3R 14246400 intergenic not near genes chr3R 14247156 intergenic not near genes chr3R 14247911 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-707 1489 chr3R 14361161 14361171 chr3R 14361287 14361297 6 127 1.5 0.0 0.8 3.3 136 chr3R 14361161 intron,5` UTR NK7.1 -,CG31320 - chr3R 14361229 intron,5` UTR NK7.1 -,CG31320 - chr3R 14361297 intron,5` UTR NK7.1 -,CG31320 - chr3R_6_14360001 chr3R_14360001 RAL-707 1490 chr3R 14426591 14426614 chr3R 14426743 14426768 5 152 19.0 16.5 17.8 0.3 177 chr3R 14426591 intron cv-c - chr3R 14426680 intron cv-c - chr3R 14426768 intron cv-c - chr3R_5_14425001 chr3R_14425001 RAL-707 1491 chr3R 14440721 14440755 chr3R 14440797 14440831 5 76 1.5 3.0 2.2 1.6 110 chr3R 14440721 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440831 intron cv-c - chr3R_5_14440001 chr3R_14440001 RAL-707 1492 chr3R 14448350 14448377 chr3R 14448465 14448491 12 115 1.0 4.0 2.5 3.4 141 chr3R 14448350 intron cv-c - chr3R 14448420 intron cv-c - chr3R 14448491 intron cv-c - chr3R_12_14445001 chr3R_14445001 RAL-707 1493 chr3R 14520435 14520473 chr3R 14520535 14520573 13 100 0.0 1.5 0.8 7.2 138 chr3R 14520435 intron Pde6 - chr3R 14520504 intron Pde6 - chr3R 14520573 intron Pde6 - chr3R_13_14520001 chr3R_14520001 RAL-707 1494 chr3R 14577960 14577978 chr3R 14578076 14578094 5 116 3.0 3.0 3.0 1.2 134 chr3R 14577960 intron stumps + chr3R 14578027 intron stumps + chr3R 14578094 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-707 1495 chr3R 14662316 14662332 chr3R 14662396 14662413 7 81 3.0 1.5 2.2 2.2 97 chr3R 14662316 exon Rad17 - chr3R 14662364 intron Rad17 - chr3R 14662413 exon Rad17 - chr3R_7_14660001 chr3R_14660001 RAL-707 1496 chr3R 14704399 14704418 chr3R 14704476 14704494 4 77 2.0 4.0 3.0 1.0 95 chr3R 14704399 intron kibra - chr3R 14704446 intron kibra - chr3R 14704494 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-707 1497 chr3R 14779070 14779094 chr3R 14779150 14779174 8 80 1.5 5.5 3.5 1.8 104 chr3R 14779070 intron jvl + chr3R 14779122 intron jvl + chr3R 14779174 intron jvl + chr3R_8_14775001 chr3R_14775001 RAL-707 1498 chr3R 14923731 14923747 chr3R 14923808 14923824 6 77 2.5 7.0 4.8 1.0 93 chr3R 14923731 3` UTR CR45598 - chr3R 14923778 intergenic CR45598 - chr3R 14923824 intergenic CR45598 - chr3R_6_14920001 chr3R_14920001 RAL-707 1499 chr3R 14954807 14954830 chr3R 14955019 14955042 6 212 2.5 1.5 2.0 2.0 235 chr3R 14954807 intergenic not near genes chr3R 14954924 intergenic not near genes chr3R 14955042 intergenic not near genes chr3R_6_14950001 chr3R_14950001 RAL-707 1500 chr3R 14973165 14973182 chr3R 14973242 14973259 4 77 3.5 2.0 2.8 1.1 94 chr3R 14973165 intergenic not near genes chr3R 14973212 intergenic not near genes chr3R 14973259 intergenic not near genes chr3R_4_14970001 chr3R_14970001 RAL-707 1501 chr3R 15020632 15020663 chr3R 15020894 15020925 7 262 2.5 2.5 2.5 2.0 293 chr3R 15020632 intergenic not near genes chr3R 15020778 intergenic not near genes chr3R 15020925 intergenic not near genes chr3R_7_15020001 chr3R_15020001 RAL-707 1502 chr3R 15041429 15041459 chr3R 15045197 15045226 Doc 7 3768 1.0 1.0 1.0 3.5 3797 chr3R 15041429 intergenic not near genes chr3R 15043328 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_7_15040001 chr3R_15040001 RAL-707 1503 chr3R 15049462 15049485 chr3R 15049585 15049611 9 126 4.0 3.5 3.8 1.9 149 chr3R 15049462 intergenic not near genes chr3R 15049536 intergenic not near genes chr3R 15049611 intergenic not near genes chr3R_9_15045001 chr3R_15045001 RAL-707 1504 chr3R 15079806 15079837 chr3R 15080047 15080078 pogo 6 241 1.5 2.5 2.0 2.0 272 chr3R 15079806 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080078 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-707 1505 chr3R 15162552 15162579 chr3R 15167319 15167346 F-element 8 4766 3.0 4.5 3.8 1.7 4794 chr3R 15162552 intron Gyc88E + chr3R 15164949 intron Gyc88E + chr3R 15167346 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-707 1506 chr3R 15177438 15177444 chr3R 15177517 15177523 4 79 3.0 4.0 3.5 0.9 85 chr3R 15177438 intron,intron Gyc88E +,Mf - chr3R 15177480 intron,intron Gyc88E +,Mf - chr3R 15177523 intron,intron Gyc88E +,Mf - chr3R_4_15175001 chr3R_15175001 RAL-707 1507 chr3R 15225301 15225330 chr3R 15225381 15225410 9 80 2.0 0.5 1.2 4.1 109 chr3R 15225301 5` UTR CG31344 - chr3R 15225356 intergenic CG31344 -,Caf1 + chr3R 15225410 intergenic CG31344 -,Caf1 + chr3R_9_15225001 chr3R_15225001 RAL-707 1508 chr3R 15286987 15286988 chr3R 21907534 21907536 5 6620548 13.5 20.5 17.0 0.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-707 1509 chr3R 15470996 15471019 chr3R 15471074 15471097 12 78 1.5 4.0 2.8 3.2 101 chr3R 15470996 intron AdamTS-A - chr3R 15471046 intron AdamTS-A - chr3R 15471097 intron AdamTS-A - chr3R_12_15470001 chr3R_15470001 RAL-707 1510 chr3R 15504175 15504206 chr3R 15504264 15504296 7 89 1.5 1.0 1.2 3.2 121 chr3R 15504175 intergenic not near genes chr3R 15504236 intergenic not near genes chr3R 15504296 intergenic not near genes chr3R_7_15500001 chr3R_15500001 RAL-707 1511 chr3R 15601165 15601194 chr3R 15608687 15608716 412 11 7522 3.0 2.5 2.8 2.9 7551 chr3R 15601165 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-707 1512 chr3R 15618737 15618756 chr3R 15626210 15626230 blood 6 7474 1.5 3.0 2.2 1.9 7493 chr3R 15618737 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626230 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-707 1513 chr3R 15677146 15677162 chr3R 15677479 15677495 7 333 3.0 1.5 2.2 2.2 349 chr3R 15677146 intron pxb + chr3R 15677320 intron pxb + chr3R 15677495 intron pxb + chr3R_7_15675001 chr3R_15675001 RAL-707 1514 chr3R 15691181 15691330 chr3R 15691286 15691417 9 91 0.5 0.5 0.5 6.0 236 chr3R 15691181 intergenic not near genes chr3R 15691299 intergenic not near genes chr3R 15691417 intergenic not near genes chr3R_9_15690001 chr3R_15690001 RAL-707 1515 chr3R 15734173 15734201 chr3R 15734264 15734292 4 90 5.0 1.5 3.2 1.0 119 chr3R 15734173 intergenic not near genes chr3R 15734232 intergenic not near genes chr3R 15734292 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-707 1516 chr3R 15777696 15777713 chr3R 15777830 15777847 5 134 0.0 3.5 1.8 1.8 151 chr3R 15777696 intergenic CG4525 + chr3R 15777772 intergenic CG4525 + chr3R 15777847 intergenic CG4525 + chr3R_5_15775001 chr3R_15775001 RAL-707 1517 chr3R 16048853 16048882 chr3R 16048943 16048970 5 89 1.5 2.0 1.8 1.8 117 chr3R 16048853 intron ird5 - chr3R 16048912 intron ird5 - chr3R 16048970 intron ird5 - chr3R_5_16045001 chr3R_16045001 RAL-707 1518 chr3R 16215112 16215127 chr3R 16215217 16215232 6 105 0.5 2.0 1.2 2.7 120 chr3R 16215112 intergenic CR45641 + chr3R 16215172 intergenic CR45641 + chr3R 16215232 intergenic CR45641 + chr3R_6_16215001 chr3R_16215001 RAL-707 1519 chr3R 16246523 16246552 chr3R 16246599 16246628 6 76 0.0 3.0 1.5 2.4 105 chr3R 16246523 intron tara + chr3R 16246576 intron tara + chr3R 16246628 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-707 1520 chr3R 16472583 16472598 chr3R 16472659 16472674 6 76 5.5 8.0 6.8 0.8 91 chr3R 16472583 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-707 1521 chr3R 16576289 16576319 chr3R 16576375 16576396 9 85 3.0 3.5 3.2 2.1 107 chr3R 16576289 intron Scp2 - chr3R 16576342 intron Scp2 - chr3R 16576396 intron Scp2 - chr3R_9_16575001 chr3R_16575001 RAL-707 1522 chr3R 16582907 16582916 chr3R 16582986 16582995 6 79 5.5 4.0 4.8 1.0 88 chr3R 16582907 intron Scp2 - chr3R 16582951 intron Scp2 - chr3R 16582995 intron Scp2 - chr3R_6_16580001 chr3R_16580001 RAL-707 1523 chr3R 16756319 16756352 chr3R 16762510 16762543 diver 7 6191 1.0 2.0 1.5 2.8 6224 chr3R 16756319 intron bxd - chr3R 16759431 intron bxd - chr3R 16762543 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-707 1524 chr3R 16845157 16845183 chr3R 16845245 16845271 4 88 1.5 1.0 1.2 1.8 114 chr3R 16845157 intron iab-8 - chr3R 16845214 intron iab-8 - chr3R 16845271 intron iab-8 - chr3R_4_16845001 chr3R_16845001 RAL-707 1525 chr3R 17121527 17121553 chr3R 17121722 17121748 5 194 2.5 2.0 2.2 1.6 221 chr3R 17121527 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121748 intron,exon cher -,CG42779 + chr3R_5_17120001 chr3R_17120001 RAL-707 1526 chr3R 17155057 17155067 chr3R 17155171 17155183 5 115 3.5 6.0 4.8 0.9 126 chr3R 17155057 exon Mur89F - chr3R 17155120 exon Mur89F - chr3R 17155183 exon Mur89F - chr3R_5_17155001 chr3R_17155001 RAL-707 1527 chr3R 17248466 17248490 chr3R 17248573 17248600 7 109 4.0 2.5 3.2 1.7 134 chr3R 17248466 intron beat-IIb - chr3R 17248533 intron beat-IIb - chr3R 17248600 intron beat-IIb - chr3R_7_17245001 chr3R_17245001 RAL-707 1528 chr3R 17346696 17346718 chr3R 17348259 17348279 F-element 4 1562 0.5 6.5 3.5 0.9 1583 chr3R 17346696 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348279 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-707 1529 chr3R 17355489 17355521 chr3R 17355567 17355599 7 78 2.0 3.5 2.8 1.8 110 chr3R 17355489 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-707 1530 chr3R 17360879 17360906 chr3R 17361069 17361095 8 190 1.0 1.0 1.0 4.0 216 chr3R 17360879 intron beat-IIa - chr3R 17360987 intron beat-IIa - chr3R 17361095 intron beat-IIa - chr3R_8_17360001 chr3R_17360001 RAL-707 1531 chr3R 17389054 17389054 chr3R 21907534 21907535 4 4518480 6.0 20.5 13.2 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-707 1532 chr3R 17461200 17461227 chr3R 17461282 17461309 8 82 3.0 0.5 1.8 2.9 109 chr3R 17461200 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461309 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-707 1533 chr3R 17497966 17497991 chr3R 17498052 17498077 7 86 1.0 2.5 1.8 2.5 111 chr3R 17497966 intron Dscam3 - chr3R 17498022 intron Dscam3 - chr3R 17498077 intron Dscam3 - chr3R_7_17495001 chr3R_17495001 RAL-707 1534 chr3R 17498850 17498879 chr3R 17498991 17499021 10 142 2.0 4.5 3.2 2.4 171 chr3R 17498850 intron Dscam3 - chr3R 17498936 intron Dscam3 - chr3R 17499021 intron Dscam3 - chr3R_10_17495001 chr3R_17495001 RAL-707 1535 chr3R 17521569 17521585 chr3R 17521729 17521741 6 159 0.0 4.0 2.0 2.0 172 chr3R 17521569 intergenic not near genes chr3R 17521655 intergenic not near genes chr3R 17521741 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-707 1536 chr3R 17554351 17554389 chr3R 17554628 17554666 19 277 2.5 1.0 1.8 6.8 315 chr3R 17554351 intergenic not near genes chr3R 17554508 intergenic not near genes chr3R 17554666 intergenic not near genes chr3R_19_17550001 chr3R_17550001 RAL-707 1537 chr3R 17591293 17591319 chr3R 17591729 17591755 F-element 8 434 1.5 2.0 1.8 2.9 462 chr3R 17591293 intergenic not near genes chr3R 17591524 intergenic not near genes chr3R 17591755 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-707 1538 chr3R 17638323 17638350 chr3R 17638809 17638834 roo 5 485 0.0 2.0 1.0 2.5 511 chr3R 17638323 intron CG43175 + chr3R 17638578 intron CG43175 + chr3R 17638834 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-707 1539 chr3R 17725072 17725085 chr3R 17725166 17725179 5 94 1.0 0.0 0.5 3.3 107 chr3R 17725072 intergenic Atg8b - chr3R 17725126 intergenic Atg8b - chr3R 17725179 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 RAL-707 1540 chr3R 17749065 17749078 chr3R 17749148 17749161 6 83 2.0 0.0 1.0 3.0 96 chr3R 17749065 intergenic not near genes chr3R 17749113 intergenic not near genes chr3R 17749161 intergenic not near genes chr3R_6_17745001 chr3R_17745001 RAL-707 1541 chr3R 17811201 17811207 chr3R 17811281 17811287 4 80 4.5 0.0 2.2 1.2 86 chr3R 17811201 intergenic CG18012 -,tinc + chr3R 17811244 intergenic CG18012 -,tinc + chr3R 17811287 intergenic CG18012 -,tinc + chr3R_4_17810001 chr3R_17810001 RAL-707 1542 chr3R 17823212 17823229 chr3R 17823297 17823314 7 85 3.0 0.5 1.8 2.5 102 chr3R 17823212 intron tinc + chr3R 17823263 intron tinc + chr3R 17823314 intron tinc + chr3R_7_17820001 chr3R_17820001 RAL-707 1543 chr3R 17925857 17925886 chr3R 17927324 17927353 hobo 10 1467 4.5 6.5 5.5 1.5 1496 chr3R 17925857 intron cpo + chr3R 17926605 intron cpo + chr3R 17927353 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-707 1544 chr3R 18040776 18040808 chr3R 18040869 18040900 6 93 2.5 4.0 3.2 1.4 124 chr3R 18040776 intergenic not near genes chr3R 18040838 intergenic not near genes chr3R 18040900 intergenic not near genes chr3R_6_18040001 chr3R_18040001 RAL-707 1545 chr3R 18041754 18041774 chr3R 18041830 18041851 9 77 0.0 0.0 0.0 9.0 97 chr3R 18041754 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_9_18040001 chr3R_18040001 RAL-707 1546 chr3R 18061581 18061612 chr3R 18063149 18063180 F-element 6 1568 1.5 1.0 1.2 2.7 1599 chr3R 18061581 intergenic not near genes chr3R 18062380 intergenic not near genes chr3R 18063180 intergenic not near genes chr3R_6_18060001 chr3R_18060001 RAL-707 1547 chr3R 18068002 18068021 chr3R 18068084 18068103 4 82 0.0 2.0 1.0 2.0 101 chr3R 18068002 intergenic not near genes chr3R 18068052 intergenic not near genes chr3R 18068103 intergenic not near genes chr3R_4_18065001 chr3R_18065001 RAL-707 1548 chr3R 18339001 18339021 chr3R 18339105 18339125 4 104 0.5 3.0 1.8 1.4 124 chr3R 18339001 intron CG15803 - chr3R 18339063 intron CG15803 - chr3R 18339125 intron CG15803 - chr3R_4_18335001 chr3R_18335001 RAL-707 1549 chr3R 18342015 18342042 chr3R 18342093 18342120 7 77 4.0 2.5 3.2 1.7 105 chr3R 18342015 intron CG15803 - chr3R 18342068 intron CG15803 - chr3R 18342120 intron CG15803 - chr3R_7_18340001 chr3R_18340001 RAL-707 1550 chr3R 18435940 18435963 chr3R 18436032 18436055 6 92 2.0 5.5 3.8 1.2 115 chr3R 18435940 intron fru - chr3R 18435998 intron fru - chr3R 18436055 intron fru - chr3R_6_18435001 chr3R_18435001 RAL-707 1551 chr3R 18501597 18501622 chr3R 18501678 18501702 6 81 2.5 3.0 2.8 1.6 105 chr3R 18501597 intron fru - chr3R 18501650 intron fru - chr3R 18501702 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-707 1552 chr3R 18528377 18528401 chr3R 18528464 18528488 7 86 1.0 2.0 1.5 2.8 111 chr3R 18528377 intron fru - chr3R 18528432 intron fru - chr3R 18528488 intron fru - chr3R_7_18525001 chr3R_18525001 RAL-707 1553 chr3R 18563192 18563214 chr3R 18563489 18563511 4 297 2.5 2.5 2.5 1.1 319 chr3R 18563192 intergenic not near genes chr3R 18563352 intergenic not near genes chr3R 18563511 intergenic not near genes chr3R_4_18560001 chr3R_18560001 RAL-707 1554 chr3R 18575572 18575604 chr3R 18575656 18575688 8 84 3.0 4.5 3.8 1.7 116 chr3R 18575572 intron,intron CG7694 +,fray + chr3R 18575630 intron,intron CG7694 +,fray + chr3R 18575688 intron,intron CG7694 +,fray + chr3R_8_18575001 chr3R_18575001 RAL-707 1555 chr3R 18579576 18579589 chr3R 18579652 18579665 6 77 2.0 0.0 1.0 3.0 89 chr3R 18579576 intron,intron CG7694 +,fray + chr3R 18579620 intron,intron CG7694 +,fray + chr3R 18579665 intron,intron CG7694 +,fray + chr3R_6_18575001 chr3R_18575001 RAL-707 1556 chr3R 18606503 18606531 chr3R 18610735 18610763 F-element 6 4232 1.0 2.0 1.5 2.4 4260 chr3R 18606503 intron,intron qin +,CG14304 - chr3R 18608633 intron,intron qin +,CG14304 - chr3R 18610763 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-707 1557 chr3R 18618274 18618291 chr3R 18618359 18618376 8 85 1.5 0.0 0.8 4.4 102 chr3R 18618274 intron,intron qin +,CG14304 - chr3R 18618325 intron,intron qin +,CG14304 - chr3R 18618376 intron,intron qin +,CG14304 - chr3R_8_18615001 chr3R_18615001 RAL-707 1558 chr3R 18730031 18730037 chr3R 18730107 18730112 4 76 2.5 5.5 4.0 0.8 81 chr3R 18730031 intron Cha + chr3R 18730072 intron Cha + chr3R 18730112 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-707 1559 chr3R 18766777 18766808 chr3R 18766855 18766886 13 78 2.0 3.0 2.5 3.7 109 chr3R 18766777 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766886 intron CG7720 - chr3R_13_18765001 chr3R_18765001 RAL-707 1560 chr3R 18781702 18781718 chr3R 18781778 18781794 4 76 1.0 2.5 1.8 1.4 92 chr3R 18781702 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781794 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-707 1561 chr3R 18802136 18802148 chr3R 18802218 18802233 5 84 3.5 3.0 3.2 1.2 97 chr3R 18802136 3` UTR CG18208 - chr3R 18802184 3` UTR CG18208 - chr3R 18802233 3` UTR CG18208 - chr3R_5_18800001 chr3R_18800001 RAL-707 1562 chr3R 18812077 18812109 chr3R 18812155 18812187 11 78 1.0 4.5 2.8 2.9 110 chr3R 18812077 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-707 1563 chr3R 18817512 18817523 chr3R 18817610 18817621 6 98 1.0 0.5 0.8 3.3 109 chr3R 18817512 intron CG18208 - chr3R 18817566 intron CG18208 - chr3R 18817621 intron CG18208 - chr3R_6_18815001 chr3R_18815001 RAL-707 1564 chr3R 18839812 18839849 chr3R 18839896 18839925 7 83 1.5 3.0 2.2 2.2 113 chr3R 18839812 intron CG18208 - chr3R 18839868 intron CG18208 - chr3R 18839925 intron CG18208 - chr3R_7_18835001 chr3R_18835001 RAL-707 1565 chr3R 18967134 18967161 chr3R 18967325 18967352 9 191 19.5 20.5 20.0 0.4 218 chr3R 18967134 intron,intron CG42613 +,CG43732 + chr3R 18967243 intron,intron CG42613 +,CG43732 + chr3R 18967352 intron,intron CG42613 +,CG43732 + chr3R_9_18965001 chr3R_18965001 RAL-707 1566 chr3R 19010025 19010035 chr3R 19010112 19010123 4 87 2.5 3.5 3.0 1.0 98 chr3R 19010025 intron gukh + chr3R 19010074 intron gukh + chr3R 19010123 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-707 1567 chr3R 19013018 19013050 chr3R 19013102 19013133 8 84 1.0 3.5 2.2 2.5 115 chr3R 19013018 intron gukh + chr3R 19013076 intron gukh + chr3R 19013133 intron gukh + chr3R_8_19010001 chr3R_19010001 RAL-707 1568 chr3R 19033925 19033961 chr3R 19034003 19034039 11 78 4.5 3.0 3.8 2.3 114 chr3R 19033925 intron CG6026 + chr3R 19033982 intron CG6026 + chr3R 19034039 intron CG6026 + chr3R_11_19030001 chr3R_19030001 RAL-707 1569 chr3R 19276935 19276946 chr3R 19277015 19277026 5 80 1.0 4.0 2.5 1.4 91 chr3R 19276935 intergenic not near genes chr3R 19276980 intergenic not near genes chr3R 19277026 intergenic not near genes chr3R_5_19275001 chr3R_19275001 RAL-707 1570 chr3R 19290549 19290579 chr3R 19290623 19290655 7 76 1.5 3.0 2.2 2.2 106 chr3R 19290549 intergenic not near genes chr3R 19290602 intergenic not near genes chr3R 19290655 intergenic not near genes chr3R_7_19290001 chr3R_19290001 RAL-707 1571 chr3R 19340401 19340425 chr3R 19340478 19340502 5 77 2.5 1.0 1.8 1.8 101 chr3R 19340401 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340502 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-707 1572 chr3R 19344684 19344698 chr3R 19344819 19344833 4 134 1.0 3.5 2.2 1.2 149 chr3R 19344684 intergenic not near genes chr3R 19344758 intergenic not near genes chr3R 19344833 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-707 1573 chr3R 19418412 19418439 chr3R 19418504 19418528 6 92 1.5 2.5 2.0 2.0 116 chr3R 19418412 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418528 intron CG31221 + chr3R_6_19415001 chr3R_19415001 RAL-707 1574 chr3R 19435513 19435544 chr3R 19435789 19435819 9 276 1.5 2.5 2.0 3.0 306 chr3R 19435513 intron CG31221 + chr3R 19435666 intron CG31221 + chr3R 19435819 intron CG31221 + chr3R_9_19435001 chr3R_19435001 RAL-707 1575 chr3R 19453851 19453868 chr3R 19454001 19454018 5 150 1.0 1.5 1.2 2.3 167 chr3R 19453851 intron CG31221 + chr3R 19453934 intron CG31221 + chr3R 19454018 intron CG31221 + chr3R_5_19450001 chr3R_19450001 RAL-707 1576 chr3R 19466163 19466185 chr3R 19468003 19468024 4 1839 16.0 9.0 12.5 0.3 1861 chr3R 19466163 intron Dys + chr3R 19467094 intron Dys + chr3R 19468024 intron Dys + chr3R_4_19465001 chr3R_19465001 RAL-707 1577 chr3R 19502199 19502231 chr3R 19502276 19502308 12 77 1.5 1.5 1.5 4.8 109 chr3R 19502199 intron Dys + chr3R 19502254 intron Dys + chr3R 19502308 intron Dys + chr3R_12_19500001 chr3R_19500001 RAL-707 1578 chr3R 19602761 19602790 chr3R 19602839 19602868 7 78 1.5 1.0 1.2 3.2 107 chr3R 19602761 intergenic CG7333 + chr3R 19602814 intergenic CG7333 + chr3R 19602868 intergenic CG7333 + chr3R_7_19600001 chr3R_19600001 RAL-707 1579 chr3R 19693811 19693834 chr3R 19693899 19693921 4 88 5.0 5.0 5.0 0.7 110 chr3R 19693811 intron Naam + chr3R 19693866 intron Naam + chr3R 19693921 intron Naam + chr3R_4_19690001 chr3R_19690001 RAL-707 1580 chr3R 19800230 19800248 chr3R 19800351 19800369 5 121 0.0 1.0 0.5 3.3 139 chr3R 19800230 intron bnl - chr3R 19800300 intron bnl - chr3R 19800369 intron bnl - chr3R_5_19800001 chr3R_19800001 RAL-707 1581 chr3R 19890240 19890255 chr3R 19890384 19890399 4 144 2.0 3.0 2.5 1.1 159 chr3R 19890240 intergenic CG4733 + chr3R 19890320 intergenic CG4733 + chr3R 19890399 intergenic CG4733 + chr3R_4_19890001 chr3R_19890001 RAL-707 1582 chr3R 19908283 19908303 chr3R 19908365 19908387 4 83 0.0 3.5 1.8 1.4 104 chr3R 19908283 intron RhoGAP92B + chr3R 19908335 intron RhoGAP92B + chr3R 19908387 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-707 1583 chr3R 19914376 19914409 chr3R 19914459 19914492 7 83 2.5 2.0 2.2 2.2 116 chr3R 19914376 3` UTR CG42508 - chr3R 19914434 3` UTR,3` UTR CG42508 -,Xport - chr3R 19914492 exon,3` UTR CG42508 -,Xport - chr3R_7_19910001 chr3R_19910001 RAL-707 1584 chr3R 19989846 19989877 chr3R 19989922 19989957 8 79 3.0 2.5 2.8 2.1 111 chr3R 19989846 intron Hs6st - chr3R 19989902 intron Hs6st - chr3R 19989957 intron Hs6st - chr3R_8_19985001 chr3R_19985001 RAL-707 1585 chr3R 20008821 20008851 chr3R 20008902 20008932 7 81 2.0 3.0 2.5 2.0 111 chr3R 20008821 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008932 intergenic MED25 +,Hs6st - chr3R_7_20005001 chr3R_20005001 RAL-707 1586 chr3R 20059464 20059500 chr3R 20059544 20059580 10 80 1.0 1.0 1.0 5.0 116 chr3R 20059464 intron CG4390 - chr3R 20059522 intron CG4390 - chr3R 20059580 exon CG4390 - chr3R_10_20055001 chr3R_20055001 RAL-707 1587 chr3R 20066115 20066139 chr3R 20066305 20066328 9 190 3.5 1.0 2.2 2.8 213 chr3R 20066115 intergenic not near genes chr3R 20066222 intergenic not near genes chr3R 20066328 intergenic not near genes chr3R_9_20065001 chr3R_20065001 RAL-707 1588 chr3R 20066552 20066562 chr3R 20066787 20066798 6 236 3.0 4.0 3.5 1.3 246 chr3R 20066552 intergenic not near genes chr3R 20066675 intergenic not near genes chr3R 20066798 intergenic not near genes chr3R_6_20065001 chr3R_20065001 RAL-707 1589 chr3R 20106663 20106687 chr3R 20106750 20106774 6 87 0.5 2.5 1.5 2.4 111 chr3R 20106663 intergenic CG31206 - chr3R 20106718 intergenic CG31206 - chr3R 20106774 intergenic CG31206 - chr3R_6_20105001 chr3R_20105001 RAL-707 1590 chr3R 20124571 20124598 chr3R 20124658 20124685 13 87 3.0 2.5 2.8 3.4 114 chr3R 20124571 intergenic not near genes chr3R 20124628 intergenic not near genes chr3R 20124685 intergenic not near genes chr3R_13_20120001 chr3R_20120001 RAL-707 1591 chr3R 20137197 20137225 chr3R 20137323 20137345 6 125 1.5 4.0 2.8 1.6 148 chr3R 20137197 intergenic not near genes chr3R 20137271 intergenic not near genes chr3R 20137345 intergenic not near genes chr3R_6_20135001 chr3R_20135001 RAL-707 1592 chr3R 20156698 20156720 chr3R 20165868 20165890 roo 7 9170 3.0 3.0 3.0 1.8 9192 chr3R 20156698 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165890 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-707 1593 chr3R 20228518 20228552 chr3R 20228749 20228782 6 231 4.0 2.5 3.2 1.4 264 chr3R 20228518 intron Nlg4 + chr3R 20228650 intron Nlg4 + chr3R 20228782 intron Nlg4 + chr3R_6_20225001 chr3R_20225001 RAL-707 1594 chr3R 20240488 20240502 chr3R 20240642 20240653 6 152 3.0 2.5 2.8 1.6 165 chr3R 20240488 intron Nlg4 + chr3R 20240570 intron Nlg4 + chr3R 20240653 intron Nlg4 + chr3R_6_20240001 chr3R_20240001 RAL-707 1595 chr3R 20252234 20252250 chr3R 20252312 20252328 7 78 0.0 1.5 0.8 3.9 94 chr3R 20252234 intergenic not near genes chr3R 20252281 intergenic cic + chr3R 20252328 intergenic cic + chr3R_7_20250001 chr3R_20250001 RAL-707 1596 chr3R 20266517 20266536 chr3R 20272987 20273007 Burdock 5 6471 4.5 2.5 3.5 1.1 6490 chr3R 20266517 intron cic + chr3R 20269762 intron cic + chr3R 20273007 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-707 1597 chr3R 20274446 20274463 chr3R 20274591 20274608 7 145 1.0 2.0 1.5 2.8 162 chr3R 20274446 intron cic + chr3R 20274527 intron cic + chr3R 20274608 intron cic + chr3R_7_20270001 chr3R_20270001 RAL-707 1598 chr3R 20282282 20282308 chr3R 20282358 20282383 4 76 0.0 0.5 0.2 3.3 101 chr3R 20282282 intron cic + chr3R 20282332 intron cic + chr3R 20282383 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-707 1599 chr3R 20331002 20331019 chr3R 20331488 20331505 roo 7 486 3.5 4.0 3.8 1.5 503 chr3R 20331002 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331505 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-707 1600 chr3R 20349644 20349665 chr3R 20350398 20350416 4 753 0.5 2.0 1.2 1.8 772 chr3R 20349644 intergenic not near genes chr3R 20350030 intergenic not near genes chr3R 20350416 intergenic not near genes chr3R_4_20350001 chr3R_20350001 RAL-707 1601 chr3R 20364446 20364474 chr3R 20364738 20364766 7 291 1.5 2.5 2.0 2.3 320 chr3R 20364446 intergenic not near genes chr3R 20364606 intergenic not near genes chr3R 20364766 intergenic not near genes chr3R_7_20360001 chr3R_20360001 RAL-707 1602 chr3R 20420391 20420410 chr3R 20420796 20420816 8 406 1.5 1.0 1.2 3.6 425 chr3R 20420391 intron Gfrl - chr3R 20420604 intron Gfrl - chr3R 20420816 intron Gfrl - chr3R_8_20420001 chr3R_20420001 RAL-707 1603 chr3R 20425091 20425110 chr3R 20425486 20425506 9 394 6.5 2.5 4.5 1.6 415 chr3R 20425091 intron Gfrl - chr3R 20425298 intron Gfrl - chr3R 20425506 intron Gfrl - chr3R_9_20425001 chr3R_20425001 RAL-707 1604 chr3R 20499872 20499898 chr3R 20499962 20499988 7 90 0.5 1.0 0.8 3.9 116 chr3R 20499872 intergenic Dic2 - chr3R 20499930 intergenic Dic2 - chr3R 20499988 intergenic Dic2 - chr3R_7_20495001 chr3R_20495001 RAL-707 1605 chr3R 20516540 20516553 chr3R 20516896 20516909 4 356 3.0 2.5 2.8 1.1 369 chr3R 20516540 intergenic not near genes chr3R 20516724 intergenic not near genes chr3R 20516909 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-707 1606 chr3R 20686971 20686989 chr3R 20687406 20687424 7 435 3.5 2.0 2.8 1.8 453 chr3R 20686971 intergenic not near genes chr3R 20687198 intergenic not near genes chr3R 20687424 intergenic not near genes chr3R_7_20685001 chr3R_20685001 RAL-707 1607 chr3R 20703484 20703510 chr3R 20703877 20703904 10 394 2.5 1.5 2.0 3.3 420 chr3R 20703484 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703904 intron Oamb - chr3R_10_20700001 chr3R_20700001 RAL-707 1608 chr3R 20707747 20707770 chr3R 20707962 20707985 5 215 3.5 1.0 2.2 1.6 238 chr3R 20707747 intron Oamb - chr3R 20707866 intron Oamb - chr3R 20707985 intron Oamb - chr3R_5_20705001 chr3R_20705001 RAL-707 1609 chr3R 20722852 20722870 chr3R 20722979 20722997 4 127 5.0 2.5 3.8 0.8 145 chr3R 20722852 intergenic not near genes chr3R 20722924 intergenic not near genes chr3R 20722997 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-707 1610 chr3R 20724501 20724527 chr3R 20724591 20724617 6 90 2.0 3.0 2.5 1.7 116 chr3R 20724501 intergenic not near genes chr3R 20724559 intergenic not near genes chr3R 20724617 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-707 1611 chr3R 20735006 20735045 chr3R 20735092 20735131 11 85 2.0 3.0 2.5 3.1 125 chr3R 20735006 intergenic not near genes chr3R 20735068 intergenic not near genes chr3R 20735131 intergenic cdc2c + chr3R_11_20735001 chr3R_20735001 RAL-707 1612 chr3R 20767498 20767534 chr3R 20767592 20767630 4 95 4.0 1.0 2.5 1.1 132 chr3R 20767498 intron Syp + chr3R 20767564 intron Syp + chr3R 20767630 intron Syp + chr3R_4_20765001 chr3R_20765001 RAL-707 1613 chr3R 20787439 20787458 chr3R 20787530 20787549 7 91 3.5 2.5 3.0 1.8 110 chr3R 20787439 intron Syp + chr3R 20787494 intron Syp + chr3R 20787549 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-707 1614 chr3R 20794878 20794908 chr3R 20794963 20794994 5 85 1.0 0.5 0.8 2.8 116 chr3R 20794878 intron Syp + chr3R 20794936 intron Syp + chr3R 20794994 intron Syp + chr3R_5_20790001 chr3R_20790001 RAL-707 1615 chr3R 20874519 20874545 chr3R 20874604 20874630 6 85 1.0 2.0 1.5 2.4 111 chr3R 20874519 3` UTR TotB + chr3R 20874574 intergenic TotB + chr3R 20874630 intergenic TotB + chr3R_6_20870001 chr3R_20870001 RAL-707 1616 chr3R 20880915 20880933 chr3R 20881003 20881021 11 88 1.0 2.0 1.5 4.4 106 chr3R 20880915 intergenic not near genes chr3R 20880968 intergenic not near genes chr3R 20881021 intergenic not near genes chr3R_11_20880001 chr3R_20880001 RAL-707 1617 chr3R 20901346 20901375 chr3R 20901432 20901460 12 85 3.0 3.5 3.2 2.9 114 chr3R 20901346 intergenic not near genes chr3R 20901403 intergenic not near genes chr3R 20901460 intergenic CG5621 + chr3R_12_20900001 chr3R_20900001 RAL-707 1618 chr3R 20966132 20966151 chr3R 20966215 20966234 5 83 0.0 2.0 1.0 2.5 102 chr3R 20966132 intron Atpalpha + chr3R 20966183 intron Atpalpha + chr3R 20966234 intron Atpalpha + chr3R_5_20965001 chr3R_20965001 RAL-707 1619 chr3R 21014007 21014042 chr3R 21014085 21014120 10 77 2.5 5.0 3.8 2.1 113 chr3R 21014007 3` UTR Calx + chr3R 21014064 3` UTR Calx + chr3R 21014120 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-707 1620 chr3R 21074806 21074831 chr3R 21075025 21075052 11 221 1.0 0.5 0.8 6.1 246 chr3R 21074806 intron dmrt93B + chr3R 21074929 intron dmrt93B + chr3R 21075052 intron dmrt93B + chr3R_11_21070001 chr3R_21070001 RAL-707 1621 chr3R 21191477 21191482 chr3R 21194354 21194360 5 2878 10.0 18.5 14.2 0.3 2883 chr3R 21191477 intron SNF4Agamma + chr3R 21192918 intron SNF4Agamma + chr3R 21194360 intron SNF4Agamma + chr3R_5_21190001 chr3R_21190001 RAL-707 1622 chr3R 21235200 21235233 chr3R 21235744 21235775 9 544 3.0 4.0 3.5 2.0 575 chr3R 21235200 intron e - chr3R 21235488 intron e - chr3R 21235775 intron e - chr3R_9_21235001 chr3R_21235001 RAL-707 1623 chr3R 21239806 21239959 chr3R 21239900 21240035 8 85 0.0 0.0 0.0 8.0 229 chr3R 21239806 intergenic not near genes chr3R 21239920 intergenic not near genes chr3R 21240035 intergenic not near genes chr3R_8_21235001 chr3R_21235001 RAL-707 1624 chr3R 21287656 21287678 chr3R 21288008 21288029 7 352 2.5 4.5 3.5 1.6 373 chr3R 21287656 intron SIFaR - chr3R 21287842 intron SIFaR - chr3R 21288029 intron SIFaR - chr3R_7_21285001 chr3R_21285001 RAL-707 1625 chr3R 21330807 21330827 chr3R 21330897 21330916 9 90 1.0 3.0 2.0 3.0 109 chr3R 21330807 intron CG16791 - chr3R 21330862 intron CG16791 - chr3R 21330916 intron CG16791 - chr3R_9_21330001 chr3R_21330001 RAL-707 1626 chr3R 21383271 21383282 chr3R 21383351 21383361 5 80 0.0 0.5 0.2 4.2 90 chr3R 21383271 intergenic not near genes chr3R 21383316 intergenic not near genes chr3R 21383361 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-707 1627 chr3R 21472026 21472035 chr3R 21472107 21472116 4 81 2.5 4.0 3.2 1.0 90 chr3R 21472026 intergenic not near genes chr3R 21472071 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-707 1628 chr3R 21494690 21494714 chr3R 21494770 21494789 5 79 2.0 1.0 1.5 2.0 99 chr3R 21494690 intergenic not near genes chr3R 21494740 intergenic not near genes chr3R 21494789 intergenic not near genes chr3R_5_21490001 chr3R_21490001 RAL-707 1629 chr3R 21505223 21505239 chr3R 21505305 21505321 5 82 5.5 2.0 3.8 1.0 98 chr3R 21505223 intron C15 + chr3R 21505272 intron C15 + chr3R 21505321 intron C15 + chr3R_5_21505001 chr3R_21505001 RAL-707 1630 chr3R 21518254 21518269 chr3R 21518338 21518353 4 84 0.0 3.5 1.8 1.4 99 chr3R 21518254 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-707 1631 chr3R 21519985 21520134 chr3R 21520086 21520228 8 97 0.5 0.5 0.5 5.3 243 chr3R 21519985 intergenic not near genes chr3R 21520106 intergenic not near genes chr3R 21520228 intergenic not near genes chr3R_8_21520001 chr3R_21520001 RAL-707 1632 chr3R 21609005 21609027 chr3R 21611638 21611655 NOF 6 2632 5.0 3.0 4.0 1.2 2650 chr3R 21609005 intron InR - chr3R 21610330 intron InR - chr3R 21611655 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-707 1633 chr3R 21631128 21631158 chr3R 21631532 21631563 7 405 2.0 1.0 1.5 2.8 435 chr3R 21631128 intron E2f - chr3R 21631346 intron E2f - chr3R 21631563 intron E2f - chr3R_7_21630001 chr3R_21630001 RAL-707 1634 chr3R 21633245 21633275 chr3R 21633491 21633521 9 246 1.5 2.5 2.0 3.0 276 chr3R 21633245 intron E2f - chr3R 21633383 intron E2f - chr3R 21633521 intron E2f - chr3R_9_21630001 chr3R_21630001 RAL-707 1635 chr3R 21644653 21644685 chr3R 21644836 21644868 10 182 3.0 2.5 2.8 2.6 215 chr3R 21644653 intron E2f - chr3R 21644760 intron E2f - chr3R 21644868 intron E2f - chr3R_10_21640001 chr3R_21640001 RAL-707 1636 chr3R 21761124 21761154 chr3R 21768516 21768544 mdg1 12 7391 4.0 5.0 4.5 2.2 7420 chr3R 21761124 exon CG42335 + chr3R 21764834 intron CG42335 + chr3R 21768544 exon CG42335 + chr3R_12_21760001 chr3R_21760001 RAL-707 1637 chr3R 21790958 21790986 chr3R 21791043 21791070 10 84 3.0 1.5 2.2 3.1 112 chr3R 21790958 intron CASK - chr3R 21791014 intron CASK - chr3R 21791070 intron CASK - chr3R_10_21790001 chr3R_21790001 RAL-707 1638 chr3R 8339241 8339247 chr3R 21907534 21907534 15 13568288 18.0 20.5 19.2 0.7 13568293 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-707 1639 chr3R 9620954 9620956 chr3R 21907534 21907534 4 12286579 7.0 20.5 13.8 0.3 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-707 1640 chr3R 17389054 17389054 chr3R 21907534 21907534 7 4518480 6.0 20.5 13.2 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_7_19645001 chr3R_19645001 RAL-707 1641 chr3R 21907534 21907534 chr3R 24389465 24389465 4 2481931 24.0 10.0 17.0 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-707 1642 chr3R 21907534 21907534 chr3R 28831801 28831803 30 6924268 24.0 16.5 20.2 1.4 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-707 1643 chr3R 8339247 8339247 chr3R 21907535 21907535 10 13568288 18.0 20.5 19.2 0.5 13568288 chr3R 8339247 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-707 1644 chr3R 9620956 9620956 chr3R 21907535 21907535 8 12286579 7.0 20.5 13.8 0.5 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-707 1645 chr3R 17389054 17389054 chr3R 21907535 21907535 5 4518481 6.0 20.5 13.2 0.4 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-707 1646 chr3R 21907535 21907535 chr3R 28831798 28831803 100 6924266 23.5 16.5 20.0 4.8 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_100_25365001 chr3R_25365001 RAL-707 1647 chr3R 8339246 8339247 chr3R 21907536 21907536 5 13568289 18.0 21.0 19.5 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-707 1648 chr3R 9620956 9620959 chr3R 21907536 21907536 5 12286579 7.0 21.0 14.0 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-707 1649 chr3R 21907536 21907536 chr3R 28831801 28831802 81 6924266 23.5 16.5 20.0 3.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_81_25365001 chr3R_25365001 RAL-707 1650 chr3R 21924013 21924042 chr3R 21924101 21924132 5 89 4.0 2.0 3.0 1.2 119 chr3R 21924013 intergenic not near genes chr3R 21924072 intergenic not near genes chr3R 21924132 intergenic not near genes chr3R_5_21920001 chr3R_21920001 RAL-707 1651 chr3R 21952135 21952164 chr3R 21952219 21952249 6 85 1.5 2.5 2.0 2.0 114 chr3R 21952135 intron Eip93F + chr3R 21952192 intron Eip93F + chr3R 21952249 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-707 1652 chr3R 22116413 22116431 chr3R 22116780 22116797 6 367 2.5 1.5 2.0 2.0 384 chr3R 22116413 exon Ir94b - chr3R 22116605 exon Ir94b - chr3R 22116797 exon Ir94b - chr3R_6_22115001 chr3R_22115001 RAL-707 1653 chr3R 22117427 22117448 chr3R 22117503 22117524 5 76 2.0 2.0 2.0 1.7 97 chr3R 22117427 intergenic Ir94b -,Ir94c - chr3R 22117476 intergenic Ir94c -,Ir94b - chr3R 22117524 intergenic Ir94c -,Ir94b - chr3R_5_22115001 chr3R_22115001 RAL-707 1654 chr3R 22239491 22239519 chr3R 22248551 22248579 roo 5 9060 2.0 3.5 2.8 1.3 9088 chr3R 22239491 intron SKIP + chr3R 22244035 intron SKIP + chr3R 22248579 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-707 1655 chr3R 22292474 22292505 chr3R 22292554 22292585 7 80 5.0 2.0 3.5 1.6 111 chr3R 22292474 intron SKIP + chr3R 22292530 intron SKIP + chr3R 22292585 intron SKIP + chr3R_7_22290001 chr3R_22290001 RAL-707 1656 chr3R 22428576 22428600 chr3R 22428652 22428676 10 76 3.5 2.0 2.8 2.6 100 chr3R 22428576 intron CG13847 - chr3R 22428626 intron CG13847 - chr3R 22428676 intron CG13847 - chr3R_10_22425001 chr3R_22425001 RAL-707 1657 chr3R 22450547 22450574 chr3R 22453187 22453214 NOF 10 2640 2.5 2.5 2.5 2.9 2667 chr3R 22450547 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-707 1658 chr3R 22492382 22492414 chr3R 22492463 22492495 9 81 1.5 2.5 2.0 3.0 113 chr3R 22492382 intergenic CG7045 + chr3R 22492438 intergenic CG7045 + chr3R 22492495 intergenic CG7045 +,CG7046 + chr3R_9_22490001 chr3R_22490001 RAL-707 1659 chr3R 22518443 22518462 chr3R 22518659 22518678 5 216 3.5 1.0 2.2 1.6 235 chr3R 22518443 3` UTR Octbeta1R + chr3R 22518560 3` UTR Octbeta1R + chr3R 22518678 3` UTR Octbeta1R + chr3R_5_22515001 chr3R_22515001 RAL-707 1660 chr3R 22538445 22538473 chr3R 22538530 22538558 4 85 2.0 1.5 1.8 1.4 113 chr3R 22538445 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-707 1661 chr3R 22646926 22646944 chr3R 22647011 22647031 7 87 6.5 0.0 3.2 1.7 105 chr3R 22646926 intron wake + chr3R 22646978 intron wake + chr3R 22647031 intron wake + chr3R_7_22645001 chr3R_22645001 RAL-707 1662 chr3R 22676194 22676200 chr3R 22676286 22676293 4 93 1.5 5.5 3.5 0.9 99 chr3R 22676194 intron wake + chr3R 22676244 intron wake + chr3R 22676293 intron wake + chr3R_4_22675001 chr3R_22675001 RAL-707 1663 chr3R 22769113 22769125 chr3R 22769190 22769199 4 76 1.0 8.5 4.8 0.7 86 chr3R 22769113 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769156 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_4_22765001 chr3R_22765001 RAL-707 1664 chr3R 22860152 22860175 chr3R 22860244 22860267 14 92 2.5 1.0 1.8 5.0 115 chr3R 22860152 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860267 intergenic not near genes chr3R_14_22860001 chr3R_22860001 RAL-707 1665 chr3R 22871433 22871465 chr3R 22871532 22871564 6 99 4.0 0.5 2.2 1.9 131 chr3R 22871433 intergenic not near genes chr3R 22871498 intergenic not near genes chr3R 22871564 intergenic not near genes chr3R_6_22870001 chr3R_22870001 RAL-707 1666 chr3R 22919158 22919184 chr3R 22919255 22919280 7 96 2.5 2.0 2.2 2.2 122 chr3R 22919158 intron klg + chr3R 22919219 intron klg + chr3R 22919280 intron klg + chr3R_7_22915001 chr3R_22915001 RAL-707 1667 chr3R 22927870 22927905 chr3R 22927965 22928000 13 94 3.0 4.5 3.8 2.7 130 chr3R 22927870 intron klg + chr3R 22927935 intron klg + chr3R 22928000 intron klg + chr3R_13_22925001 chr3R_22925001 RAL-707 1668 chr3R 23016196 23016227 chr3R 23016273 23016304 7 77 1.0 1.0 1.0 3.5 108 chr3R 23016196 intergenic not near genes chr3R 23016250 intergenic not near genes chr3R 23016304 intergenic not near genes chr3R_7_23015001 chr3R_23015001 RAL-707 1669 chr3R 23090404 23090433 chr3R 23090487 23090516 8 83 3.5 2.5 3.0 2.0 112 chr3R 23090404 intron CG13830 - chr3R 23090460 intron CG13830 - chr3R 23090516 intron CG13830 - chr3R_8_23090001 chr3R_23090001 RAL-707 1670 chr3R 23182494 23182626 chr3R 23182610 23182706 9 113 0.0 0.0 0.0 9.0 212 chr3R 23182494 intron Irk1 + chr3R 23182600 intron Irk1 + chr3R 23182706 intron Irk1 + chr3R_9_23180001 chr3R_23180001 RAL-707 1671 chr3R 23245992 23246021 chr3R 23246074 23246102 5 82 3.5 2.5 3.0 1.2 110 chr3R 23245992 intron CG4467 - chr3R 23246047 intron CG4467 - chr3R 23246102 intron CG4467 - chr3R_5_23245001 chr3R_23245001 RAL-707 1672 chr3R 23248203 23248231 chr3R 23248286 23248313 10 84 2.0 5.0 3.5 2.2 110 chr3R 23248203 intron CG4467 - chr3R 23248258 intron CG4467 - chr3R 23248313 intron CG4467 - chr3R_10_23245001 chr3R_23245001 RAL-707 1673 chr3R 23291260 23291271 chr3R 23291341 23291357 4 84 7.0 2.5 4.8 0.7 97 chr3R 23291260 3` UTR pnt - chr3R 23291308 3` UTR pnt - chr3R 23291357 3` UTR pnt - chr3R_4_23290001 chr3R_23290001 RAL-707 1674 chr3R 23311685 23311700 chr3R 23311779 23311794 5 94 3.5 3.0 3.2 1.2 109 chr3R 23311685 intron pnt - chr3R 23311740 intron pnt - chr3R 23311794 intron pnt - chr3R_5_23310001 chr3R_23310001 RAL-707 1675 chr3R 23338907 23338915 chr3R 23338979 23338991 7 74 7.0 3.5 5.2 1.1 84 chr3R 23338907 intron pnt - chr3R 23338949 intron pnt - chr3R 23338991 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-707 1676 chr3R 23533537 23533544 chr3R 23533629 23533635 4 92 5.5 16.5 11.0 0.3 98 chr3R 23533537 exon CG10170 - chr3R 23533586 exon CG10170 - chr3R 23533635 exon CG10170 - chr3R_4_23530001 chr3R_23530001 RAL-707 1677 chr3R 23557875 23557882 chr3R 23557953 23557960 4 77 5.0 2.0 3.5 0.9 85 chr3R 23557875 intron beat-IV + chr3R 23557918 intron beat-IV + chr3R 23557960 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-707 1678 chr3R 23558400 23558424 chr3R 23560181 23560205 Bari1 11 1781 1.0 4.0 2.5 3.1 1805 chr3R 23558400 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560205 intron beat-IV + chr3R_11_23555001 chr3R_23555001 RAL-707 1679 chr3R 23572751 23572778 chr3R 23572871 23572898 9 120 2.0 1.5 1.8 3.2 147 chr3R 23572751 intron beat-IV + chr3R 23572824 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_9_23570001 chr3R_23570001 RAL-707 1680 chr3R 23608577 23608606 chr3R 23608703 23608734 6 128 5.5 3.5 4.5 1.1 157 chr3R 23608577 intron CG31145 - chr3R 23608656 intron CG31145 - chr3R 23608734 exon CG31145 - chr3R_6_23605001 chr3R_23605001 RAL-707 1681 chr3R 23684696 23684722 chr3R 23685182 23685208 roo 8 485 3.5 3.5 3.5 1.8 512 chr3R 23684696 exon CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685208 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-707 1682 chr3R 23688474 23688500 chr3R 23688564 23688591 7 91 2.0 5.0 3.5 1.6 117 chr3R 23688474 intergenic SPE + chr3R 23688532 intergenic SPE +,CG10254 - chr3R 23688591 intergenic CG10254 -,SPE + chr3R_7_23685001 chr3R_23685001 RAL-707 1683 chr3R 23714711 23714744 chr3R 23714805 23714838 6 94 4.0 0.5 2.2 1.9 127 chr3R 23714711 intron nau - chr3R 23714774 intron nau - chr3R 23714838 intron nau - chr3R_6_23710001 chr3R_23710001 RAL-707 1684 chr3R 23820635 23820668 chr3R 23820719 23820752 7 84 2.0 2.0 2.0 2.3 117 chr3R 23820635 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820752 5` UTR CG34355 + chr3R_7_23820001 chr3R_23820001 RAL-707 1685 chr3R 23835405 23835424 chr3R 23844555 23844574 roo 7 9150 4.5 3.0 3.8 1.5 9169 chr3R 23835405 intron CG34355 + chr3R 23839990 intron CG34355 + chr3R 23844574 intron CG34355 + chr3R_7_23835001 chr3R_23835001 RAL-707 1686 chr3R 23944911 23944931 chr3R 23944996 23945016 11 85 2.5 5.0 3.8 2.3 105 chr3R 23944911 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945016 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-707 1687 chr3R 24011672 24011678 chr3R 24011755 24011760 4 83 1.0 0.0 0.5 2.7 88 chr3R 24011672 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011760 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-707 1688 chr3R 24025577 24025600 chr3R 24025656 24025679 5 79 3.5 2.5 3.0 1.2 102 chr3R 24025577 intron KrT95D - chr3R 24025628 intron KrT95D - chr3R 24025679 intron KrT95D - chr3R_5_24025001 chr3R_24025001 RAL-707 1689 chr3R 24072087 24072122 chr3R 24072523 24072560 jockey 9 437 2.0 7.0 4.5 1.6 473 chr3R 24072087 intron 4EHP - chr3R 24072324 intron 4EHP - chr3R 24072560 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-707 1690 chr3R 24076918 24076948 chr3R 24078385 24078415 hobo 8 1467 4.5 3.5 4.0 1.6 1497 chr3R 24076918 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-707 1691 chr3R 24080612 24080636 chr3R 24080711 24080735 8 99 3.0 4.0 3.5 1.8 123 chr3R 24080612 intron 4EHP - chr3R 24080674 intron 4EHP - chr3R 24080735 intron 4EHP - chr3R_8_24080001 chr3R_24080001 RAL-707 1692 chr3R 24100457 24100601 chr3R 24100552 24100825 10 134 3.0 3.0 3.0 2.5 368 chr3R 24100457 intron 4EHP - chr3R 24100641 intron 4EHP - chr3R 24100825 intron 4EHP - chr3R_10_24100001 chr3R_24100001 RAL-707 1693 chr3R 24207228 24207245 chr3R 24212304 24212321 flea 4 5076 4.0 8.0 6.0 0.6 5093 chr3R 24207228 intron twin - chr3R 24209774 intron twin - chr3R 24212321 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-707 1694 chr3R 24431601 24431627 chr3R 24431680 24431706 10 79 5.0 1.0 3.0 2.5 105 chr3R 24431601 intron nAChRalpha1 - chr3R 24431654 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-707 1695 chr3R 24433478 24433500 chr3R 24433556 24433578 8 79 2.0 3.0 2.5 2.3 100 chr3R 24433478 intron nAChRalpha1 - chr3R 24433528 intron nAChRalpha1 - chr3R 24433578 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-707 1696 chr3R 24493274 24493310 chr3R 24493503 24493539 BS 10 229 2.0 3.5 2.8 2.6 265 chr3R 24493274 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_10_24490001 chr3R_24490001 RAL-707 1697 chr3R 24624378 24624395 chr3R 24624463 24624484 11 88 2.5 2.5 2.5 3.1 106 chr3R 24624378 intron Syx18 - chr3R 24624431 intron Syx18 - chr3R 24624484 exon Syx18 - chr3R_11_24620001 chr3R_24620001 RAL-707 1698 chr3R 24670168 24670198 chr3R 24670252 24670281 12 84 0.5 3.5 2.0 4.0 113 chr3R 24670168 intron slo + chr3R 24670224 intron slo + chr3R 24670281 intron slo + chr3R_12_24670001 chr3R_24670001 RAL-707 1699 chr3R 24671220 24671240 chr3R 24671297 24671317 5 77 4.0 2.5 3.2 1.2 97 chr3R 24671220 intron slo + chr3R 24671268 intron slo + chr3R 24671317 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-707 1700 chr3R 24728339 24728361 chr3R 24728512 24728533 5 173 3.0 2.5 2.8 1.3 194 chr3R 24728339 intron tok + chr3R 24728436 intron tok + chr3R 24728533 intron tok + chr3R_5_24725001 chr3R_24725001 RAL-707 1701 chr3R 24730093 24730118 chr3R 24732471 24732496 Doc 7 2377 3.0 0.0 1.5 2.8 2403 chr3R 24730093 intron tok + chr3R 24731294 intron tok + chr3R 24732496 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-707 1702 chr3R 24743053 24743063 chr3R 24743138 24743148 6 85 0.0 5.5 2.8 1.6 95 chr3R 24743053 intron tok + chr3R 24743100 intron tok + chr3R 24743148 intron tok + chr3R_6_24740001 chr3R_24740001 RAL-707 1703 chr3R 24789983 24790011 chr3R 24790128 24790156 6 145 2.0 2.0 2.0 2.0 173 chr3R 24789983 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790156 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-707 1704 chr3R 24893473 24893486 chr3R 24893553 24893566 4 80 1.5 1.5 1.5 1.6 93 chr3R 24893473 intron CG31121 - chr3R 24893520 intron CG31121 - chr3R 24893566 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-707 1705 chr3R 24927123 24927157 chr3R 24931914 24931948 Doc 7 4791 4.0 2.0 3.0 1.8 4825 chr3R 24927123 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931948 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-707 1706 chr3R 25004905 25004919 chr3R 25004988 25005002 8 83 0.0 1.5 0.8 4.4 97 chr3R 25004905 intron tnc + chr3R 25004954 intron tnc + chr3R 25005002 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-707 1707 chr3R 25088785 25088806 chr3R 25088870 25088891 14 84 0.5 2.5 1.5 5.6 106 chr3R 25088785 intergenic not near genes chr3R 25088838 intergenic not near genes chr3R 25088891 intergenic not near genes chr3R_14_25085001 chr3R_25085001 RAL-707 1708 chr3R 25209598 25209621 chr3R 25209680 25209703 9 82 2.0 1.5 1.8 3.2 105 chr3R 25209598 intron CG13654 + chr3R 25209650 intron CG13654 + chr3R 25209703 intron CG13654 + chr3R_9_25205001 chr3R_25205001 RAL-707 1709 chr3R 25267858 25267874 chr3R 25267963 25267978 5 105 0.0 0.0 0.0 5.0 120 chr3R 25267858 intron CR45214 - chr3R 25267918 intron CR45214 - chr3R 25267978 3` UTR CR45214 - chr3R_5_25265001 chr3R_25265001 RAL-707 1710 chr3R 25362206 25362227 chr3R 25362402 25362423 6 196 1.5 3.0 2.2 1.9 217 chr3R 25362206 intron Fur1 - chr3R 25362314 intron Fur1 - chr3R 25362423 intron Fur1 - chr3R_6_25360001 chr3R_25360001 RAL-707 1711 chr3R 25368475 25368502 chr3R 25368593 25368620 7 118 0.5 0.0 0.2 5.8 145 chr3R 25368475 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368620 intron Fur1 - chr3R_7_25365001 chr3R_25365001 RAL-707 1712 chr3R 25377089 25377124 chr3R 25377355 25377390 13 266 2.0 5.5 3.8 2.7 301 chr3R 25377089 intron Fur1 - chr3R 25377240 intron Fur1 - chr3R 25377390 intron Fur1 - chr3R_13_25375001 chr3R_25375001 RAL-707 1713 chr3R 25386823 25386855 chr3R 25386916 25386948 12 93 0.5 2.5 1.5 4.8 125 chr3R 25386823 intron Fur1 - chr3R 25386886 intron Fur1 - chr3R 25386948 intron Fur1 - chr3R_12_25385001 chr3R_25385001 RAL-707 1714 chr3R 25422066 25422090 chr3R 25422147 25422171 7 81 2.0 0.0 1.0 3.5 105 chr3R 25422066 intron Fur1 - chr3R 25422118 intron Fur1 - chr3R 25422171 intron Fur1 - chr3R_7_25420001 chr3R_25420001 RAL-707 1715 chr3R 25436495 25436512 chr3R 25436589 25436606 10 94 1.0 2.5 1.8 3.6 111 chr3R 25436495 intron Fur1 - chr3R 25436550 intron Fur1 - chr3R 25436606 intron Fur1 - chr3R_10_25435001 chr3R_25435001 RAL-707 1716 chr3R 25637355 25637391 chr3R 25637531 25637567 7 175 2.0 3.0 2.5 2.0 212 chr3R 25637355 intergenic jigr1 + chr3R 25637461 intergenic jigr1 + chr3R 25637567 intergenic jigr1 + chr3R_7_25635001 chr3R_25635001 RAL-707 1717 chr3R 25669068 25669098 chr3R 25669161 25669189 7 93 0.0 0.5 0.2 5.8 121 chr3R 25669068 intron Lgr3 + chr3R 25669128 intron Lgr3 + chr3R 25669189 intron Lgr3 + chr3R_7_25665001 chr3R_25665001 RAL-707 1718 chr3R 25689130 25689163 chr3R 25689238 25689271 12 108 2.0 2.5 2.2 3.8 141 chr3R 25689130 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-707 1719 chr3R 25725831 25725860 chr3R 25734987 25735020 roo 5 9159 3.5 2.5 3.0 1.2 9189 chr3R 25725831 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735020 intron LpR2 - chr3R_5_25730001 chr3R_25730001 RAL-707 1720 chr3R 25746585 25746609 chr3R 25746999 25747023 7 414 4.0 5.0 4.5 1.3 438 chr3R 25746585 intron LpR1 - chr3R 25746804 intron LpR1 - chr3R 25747023 exon LpR1 - chr3R_7_25745001 chr3R_25745001 RAL-707 1721 chr3R 25765877 25765912 chr3R 25765956 25765991 10 79 2.5 3.5 3.0 2.5 114 chr3R 25765877 intergenic not near genes chr3R 25765934 intergenic not near genes chr3R 25765991 intergenic not near genes chr3R_10_25765001 chr3R_25765001 RAL-707 1722 chr3R 25788521 25788548 chr3R 25788609 25788638 9 89 4.0 4.5 4.2 1.7 117 chr3R 25788521 exon CG31380 - chr3R 25788580 exon CG31380 - chr3R 25788638 exon CG31380 - chr3R_9_25785001 chr3R_25785001 RAL-707 1723 chr3R 25801272 25801288 chr3R 25802256 25802271 5 984 2.0 1.5 1.8 1.8 999 chr3R 25801272 intergenic not near genes chr3R 25801772 intergenic not near genes chr3R 25802271 intergenic not near genes chr3R_5_25800001 chr3R_25800001 RAL-707 1724 chr3R 25832695 25832724 chr3R 25841875 25841906 roo 11 9182 4.0 6.0 5.0 1.8 9211 chr3R 25832695 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_11_25835001 chr3R_25835001 RAL-707 1725 chr3R 25843635 25843666 chr3R 25843765 25843796 9 130 1.5 3.0 2.2 2.8 161 chr3R 25843635 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843796 intergenic CR45653 + chr3R_9_25840001 chr3R_25840001 RAL-707 1726 chr3R 25900883 25900907 chr3R 25903600 25903624 9 2717 29.5 22.0 25.8 0.3 2741 chr3R 25900883 exon CG31091 + chr3R 25902254 intergenic CG31091 +,CG31089 + chr3R 25903624 exon,intron CG31089 +,CR43259 - chr3R_9_25900001 chr3R_25900001 RAL-707 1727 chr3R 25927507 25927537 chr3R 25927588 25927619 7 82 2.5 0.0 1.2 3.2 112 chr3R 25927507 intron CCAP-R - chr3R 25927563 intron CCAP-R - chr3R 25927619 intron CCAP-R - chr3R_7_25925001 chr3R_25925001 RAL-707 1728 chr3R 26093846 26093873 chr3R 26093924 26093951 8 78 3.0 4.0 3.5 1.8 105 chr3R 26093846 intron dys - chr3R 26093898 intron dys - chr3R 26093951 intron dys - chr3R_8_26090001 chr3R_26090001 RAL-707 1729 chr3R 26100031 26100066 chr3R 26100107 26100142 13 76 2.5 4.5 3.5 2.9 111 chr3R 26100031 intergenic not near genes chr3R 26100086 intergenic not near genes chr3R 26100142 intergenic not near genes chr3R_13_26100001 chr3R_26100001 RAL-707 1730 chr3R 26104066 26104100 chr3R 26105145 26105179 10 1079 16.5 11.5 14.0 0.7 1113 chr3R 26104066 intergenic not near genes chr3R 26104622 intergenic not near genes chr3R 26105179 intergenic not near genes chr3R_10_26100001 chr3R_26100001 RAL-707 1731 chr3R 26108828 26108840 chr3R 26117410 26117423 Tirant 4 8583 2.0 0.5 1.2 1.8 8595 chr3R 26108828 5` UTR CG31324 + chr3R 26113126 intron CG31324 + chr3R 26117423 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-707 1732 chr3R 26121953 26121973 chr3R 26122050 26122070 6 97 0.0 4.5 2.2 1.9 117 chr3R 26121953 intron CG31324 + chr3R 26122012 intron CG31324 + chr3R 26122070 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-707 1733 chr3R 26126272 26126288 chr3R 26126376 26126393 6 105 2.0 3.0 2.5 1.7 121 chr3R 26126272 intron CG31324 + chr3R 26126332 intron CG31324 + chr3R 26126393 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-707 1734 chr3R 26143228 26143240 chr3R 26143460 26143472 5 232 3.0 1.0 2.0 1.7 244 chr3R 26143228 intergenic not near genes chr3R 26143350 intergenic not near genes chr3R 26143472 intergenic not near genes chr3R_5_26140001 chr3R_26140001 RAL-707 1735 chr3R 26265820 26265846 chr3R 26265907 26265933 8 88 3.5 4.5 4.0 1.6 113 chr3R 26265820 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265933 intron CG6154 + chr3R_8_26265001 chr3R_26265001 RAL-707 1736 chr3R 26294718 26294746 chr3R 26294796 26294824 11 78 1.0 2.0 1.5 4.4 106 chr3R 26294718 intergenic not near genes chr3R 26294771 intergenic not near genes chr3R 26294824 intergenic not near genes chr3R_11_26290001 chr3R_26290001 RAL-707 1737 chr3R 26314649 26314675 chr3R 26314794 26314820 8 145 4.5 1.5 3.0 2.0 171 chr3R 26314649 intergenic not near genes chr3R 26314734 intergenic not near genes chr3R 26314820 intergenic not near genes chr3R_8_26310001 chr3R_26310001 RAL-707 1738 chr3R 26320363 26320371 chr3R 26320550 26320557 5 187 2.5 6.0 4.2 1.0 194 chr3R 26320363 intron CG33970 + chr3R 26320460 intron CG33970 + chr3R 26320557 intron CG33970 + chr3R_5_26320001 chr3R_26320001 RAL-707 1739 chr3R 26325684 26325708 chr3R 26325771 26325795 9 87 2.5 2.5 2.5 2.6 111 chr3R 26325684 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325795 intron CG33970 + chr3R_9_26325001 chr3R_26325001 RAL-707 1740 chr3R 26330291 26330319 chr3R 26330386 26330414 9 95 4.5 0.5 2.5 2.6 123 chr3R 26330291 intron CG33970 + chr3R 26330352 intron CG33970 + chr3R 26330414 intron CG33970 + chr3R_9_26330001 chr3R_26330001 RAL-707 1741 chr3R 26331608 26331631 chr3R 26331762 26331786 5 155 2.0 4.0 3.0 1.2 178 chr3R 26331608 exon CG33970 + chr3R 26331697 intron CG33970 + chr3R 26331786 intron CG33970 + chr3R_5_26330001 chr3R_26330001 RAL-707 1742 chr3R 26376324 26376356 chr3R 26385484 26385514 roo 10 9160 2.5 0.0 1.2 4.5 9190 chr3R 26376324 intergenic not near genes chr3R 26380919 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_10_26380001 chr3R_26380001 RAL-707 1743 chr3R 26510522 26510533 chr3R 26519577 26519588 roo 4 9055 3.5 1.5 2.5 1.1 9066 chr3R 26510522 intron plum - chr3R 26515055 intron plum - chr3R 26519588 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-707 1744 chr3R 26553212 26553241 chr3R 26553716 26553745 10 504 3.5 1.0 2.2 3.1 533 chr3R 26553212 intron scrib + chr3R 26553478 intron scrib + chr3R 26553745 intron scrib + chr3R_10_26550001 chr3R_26550001 RAL-707 1745 chr3R 26558328 26558360 chr3R 26565640 26565672 Stalker4 11 7312 3.5 3.5 3.5 2.4 7344 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565672 intron scrib + chr3R_11_26560001 chr3R_26560001 RAL-707 1746 chr3R 26607744 26607770 chr3R 26607820 26607846 8 75 2.0 3.0 2.5 2.3 102 chr3R 26607744 5` UTR CR44951 + chr3R 26607795 5` UTR CR44951 + chr3R 26607846 5` UTR CR44951 + chr3R_8_26605001 chr3R_26605001 RAL-707 1747 chr3R 26641639 26641663 chr3R 26641726 26641748 8 86 2.5 3.0 2.8 2.1 109 chr3R 26641639 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641748 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-707 1748 chr3R 26642728 26642761 chr3R 26643121 26643155 jockey 6 394 3.5 3.5 3.5 1.3 427 chr3R 26642728 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-707 1749 chr3R 21907535 21907536 chr3R 26659336 26659337 6 4751801 23.5 24.0 23.8 0.2 4751802 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-707 1750 chr3R 26660650 26660678 chr3R 26660734 26660762 9 84 0.0 6.5 3.2 2.1 112 chr3R 26660650 intron beat-VII - chr3R 26660706 intron beat-VII - chr3R 26660762 intron beat-VII - chr3R_9_26660001 chr3R_26660001 RAL-707 1751 chr3R 26710830 26710856 chr3R 26710915 26710940 5 84 3.5 1.0 2.2 1.6 110 chr3R 26710830 intron amon - chr3R 26710885 intron amon - chr3R 26710940 intron amon - chr3R_5_26710001 chr3R_26710001 RAL-707 1752 chr3R 26770240 26770271 chr3R 26770317 26770348 9 77 3.0 1.5 2.2 2.8 108 chr3R 26770240 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770348 intergenic not near genes chr3R_9_26770001 chr3R_26770001 RAL-707 1753 chr3R 26789605 26789615 chr3R 26789684 26789694 4 79 0.0 0.0 0.0 4.0 89 chr3R 26789605 intergenic not near genes chr3R 26789650 intergenic not near genes chr3R 26789694 intergenic not near genes chr3R_4_26785001 chr3R_26785001 RAL-707 1754 chr3R 26810553 26810585 chr3R 26811038 26811070 roo 9 485 2.0 3.0 2.5 2.6 517 chr3R 26810553 intron Tl + chr3R 26810812 intron Tl + chr3R 26811070 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-707 1755 chr3R 27007411 27007430 chr3R 27016546 27016565 roo 9 9135 3.0 3.5 3.2 2.1 9154 chr3R 27007411 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016565 intron RYa-R + chr3R_9_27010001 chr3R_27010001 RAL-707 1756 chr3R 27140518 27140547 chr3R 27148128 27148157 412 14 7610 5.0 5.5 5.2 2.3 7639 chr3R 27140518 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-707 1757 chr3R 27292281 27292306 chr3R 27292393 27292418 7 112 2.0 3.5 2.8 1.8 137 chr3R 27292281 intergenic CG3348 - chr3R 27292350 intergenic CG3348 - chr3R 27292418 intergenic CG3348 - chr3R_7_27290001 chr3R_27290001 RAL-707 1758 chr3R 27329473 27329494 chr3R 27329550 27329571 6 77 2.5 1.0 1.8 2.1 98 chr3R 27329473 intergenic CG3330 - chr3R 27329522 intergenic CG3330 - chr3R 27329571 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-707 1759 chr3R 27342796 27342824 chr3R 27351376 27351405 Tirant 12 8581 3.5 2.0 2.8 3.2 8609 chr3R 27342796 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_12_27345001 chr3R_27345001 RAL-707 1760 chr3R 27385688 27385721 chr3R 27385959 27385992 11 270 2.0 3.5 2.8 2.9 304 chr3R 27385688 intron side - chr3R 27385840 intron side - chr3R 27385992 intron side - chr3R_11_27385001 chr3R_27385001 RAL-707 1761 chr3R 27490938 27490967 chr3R 27491048 27491077 12 110 3.5 1.5 2.5 3.4 139 chr3R 27490938 intergenic not near genes chr3R 27491008 intergenic not near genes chr3R 27491077 intergenic not near genes chr3R_12_27490001 chr3R_27490001 RAL-707 1762 chr3R 27496596 27496601 chr3R 27496700 27496706 5 105 3.0 1.0 2.0 1.7 110 chr3R 27496596 intergenic not near genes chr3R 27496651 intergenic not near genes chr3R 27496706 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-707 1763 chr3R 27619703 27619728 chr3R 27619815 27619842 12 114 2.0 3.5 2.8 3.2 139 chr3R 27619703 intron Tusp + chr3R 27619772 intron Tusp + chr3R 27619842 intron Tusp + chr3R_12_27615001 chr3R_27615001 RAL-707 1764 chr3R 27622233 27622258 chr3R 27622328 27622353 6 94 2.0 2.5 2.2 1.9 120 chr3R 27622233 intron Tusp + chr3R 27622293 intron Tusp + chr3R 27622353 intron Tusp + chr3R_6_27620001 chr3R_27620001 RAL-707 1765 chr3R 27627092 27627119 chr3R 27627194 27627219 7 102 2.0 2.0 2.0 2.3 127 chr3R 27627092 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627219 intron Tusp + chr3R_7_27625001 chr3R_27625001 RAL-707 1766 chr3R 27706777 27706795 chr3R 27706854 27706871 5 77 4.5 0.5 2.5 1.4 94 chr3R 27706777 intergenic CG12428 -,CG12877 + chr3R 27706824 intergenic CG12428 -,CG12877 + chr3R 27706871 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-707 1767 chr3R 27799941 27799962 chr3R 27800023 27800044 10 82 3.0 2.5 2.8 2.6 103 chr3R 27799941 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_10_27795001 chr3R_27795001 RAL-707 1768 chr3R 27856759 27856791 chr3R 27858242 27858271 hopper2 9 1482 1.5 4.5 3.0 2.2 1512 chr3R 27856759 intron CG34353 - chr3R 27857515 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-707 1769 chr3R 27875703 27875733 chr3R 27882756 27882788 297 9 7055 2.5 2.0 2.2 2.8 7085 chr3R 27875703 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-707 1770 chr3R 27991335 27991352 chr3R 27991419 27991436 4 84 1.0 2.0 1.5 1.6 101 chr3R 27991335 intergenic not near genes chr3R 27991386 intergenic not near genes chr3R 27991436 intergenic not near genes chr3R_4_27990001 chr3R_27990001 RAL-707 1771 chr3R 28035490 28035515 chr3R 28035567 28035592 5 77 1.0 2.5 1.8 1.8 102 chr3R 28035490 intron CG34362 + chr3R 28035541 intron CG34362 + chr3R 28035592 intron CG34362 + chr3R_5_28035001 chr3R_28035001 RAL-707 1772 chr3R 28068493 28068527 chr3R 28073935 28073969 I-element 7 5442 1.0 2.5 1.8 2.5 5476 chr3R 28068493 intron CG34362 + chr3R 28071231 intron CG34362 + chr3R 28073969 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-707 1773 chr3R 28102574 28102591 chr3R 28102812 28102829 5 238 2.5 4.5 3.5 1.1 255 chr3R 28102574 intergenic not near genes chr3R 28102702 intergenic not near genes chr3R 28102829 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-707 1774 chr3R 28103334 28103356 chr3R 28103426 28103449 7 92 2.5 3.0 2.8 1.8 115 chr3R 28103334 intergenic not near genes chr3R 28103392 intergenic not near genes chr3R 28103449 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-707 1775 chr3R 28118570 28118864 chr3R 28118699 28118945 9 109 4.5 0.0 2.2 2.8 375 chr3R 28118570 intergenic not near genes chr3R 28118758 intergenic not near genes chr3R 28118945 intergenic not near genes chr3R_9_28115001 chr3R_28115001 RAL-707 1776 chr3R 28130075 28130096 chr3R 28130189 28130210 5 114 2.0 2.0 2.0 1.7 135 chr3R 28130075 intergenic not near genes chr3R 28130142 intergenic not near genes chr3R 28130210 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-707 1777 chr3R 28169842 28169874 chr3R 28170028 28170060 10 186 2.0 0.5 1.2 4.5 218 chr3R 28169842 intron CG34354 + chr3R 28169951 intron CG34354 + chr3R 28170060 intron CG34354 + chr3R_10_28165001 chr3R_28165001 RAL-707 1778 chr3R 28173670 28173702 chr3R 28181099 28181132 mdg1 4 7430 3.5 1.0 2.2 1.2 7462 chr3R 28173670 intron CG34354 + chr3R 28177401 intron CG34354 + chr3R 28181132 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-707 1779 chr3R 28201830 28201852 chr3R 28201927 28201949 10 98 5.0 3.5 4.2 1.9 119 chr3R 28201830 intron CG34354 + chr3R 28201890 intron CG34354 + chr3R 28201949 intron CG34354 + chr3R_10_28200001 chr3R_28200001 RAL-707 1780 chr3R 28223909 28223935 chr3R 28224365 28224390 5 456 3.0 2.0 2.5 1.4 481 chr3R 28223909 intron CG34354 + chr3R 28224150 intron CG34354 + chr3R 28224390 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-707 1781 chr3R 28233781 28233808 chr3R 28234017 28234044 5 235 1.5 2.5 2.0 1.7 263 chr3R 28233781 intron CG34354 + chr3R 28233912 intron CG34354 + chr3R 28234044 intron CG34354 + chr3R_5_28230001 chr3R_28230001 RAL-707 1782 chr3R 28253341 28253372 chr3R 28255851 28255882 jockey 7 2510 4.0 3.0 3.5 1.6 2541 chr3R 28253341 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255882 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-707 1783 chr3R 28282987 28283017 chr3R 28283616 28283646 11 629 2.5 2.5 2.5 3.1 659 chr3R 28282987 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283646 intergenic CG34437 +,CG34436 + chr3R_11_28280001 chr3R_28280001 RAL-707 1784 chr3R 28300167 28300195 chr3R 28300253 28300281 9 86 5.0 2.5 3.8 1.9 114 chr3R 28300167 intergenic not near genes chr3R 28300224 intergenic not near genes chr3R 28300281 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-707 1785 chr3R 28305312 28305338 chr3R 28306484 28306510 6 1172 3.0 3.0 3.0 1.5 1198 chr3R 28305312 intergenic not near genes chr3R 28305911 intergenic not near genes chr3R 28306510 intergenic not near genes chr3R_6_28305001 chr3R_28305001 RAL-707 1786 chr3R 28407706 28407740 chr3R 28407790 28407826 10 85 2.5 3.0 2.8 2.6 120 chr3R 28407706 intergenic not near genes chr3R 28407766 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_10_28405001 chr3R_28405001 RAL-707 1787 chr3R 28628127 28628154 chr3R 28628210 28628237 4 83 1.5 1.0 1.2 1.8 110 chr3R 28628127 intron CG10011 - chr3R 28628182 intron CG10011 - chr3R 28628237 intron CG10011 - chr3R_4_28625001 chr3R_28625001 RAL-707 1788 chr3R 28640345 28640361 chr3R 28640428 28640444 5 83 1.0 2.5 1.8 1.8 99 chr3R 28640345 intergenic not near genes chr3R 28640394 intergenic not near genes chr3R 28640444 intergenic not near genes chr3R_5_28640001 chr3R_28640001 RAL-707 1789 chr3R 28758288 28758303 chr3R 28763905 28763919 roo 5 5617 3.0 0.0 1.5 2.0 5631 chr3R 28758288 intergenic aqrs - chr3R 28761104 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-707 1790 chr3R 28792869 28792897 chr3R 28797964 28797991 jockey 5 5094 0.5 1.5 1.0 2.5 5122 chr3R 28792869 intergenic not near genes chr3R 28795430 intergenic not near genes chr3R 28797991 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-707 1791 chr3R 28811572 28811599 chr3R 28811718 28811745 5 146 2.5 1.0 1.8 1.8 173 chr3R 28811572 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811745 intergenic CG1646 +,wdn - chr3R_5_28810001 chr3R_28810001 RAL-707 1792 chr3R 21907534 21907536 chr3R 28831798 28831801 123 6924265 23.5 16.5 20.0 5.9 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_123_25365001 chr3R_25365001 RAL-707 1793 chr3R 21907534 21907535 chr3R 28831802 28831803 84 6924267 23.5 16.5 20.0 4.0 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_84_25365001 chr3R_25365001 RAL-707 1794 chr3R 28888773 28888799 chr3R 28888865 28888892 6 93 2.0 0.0 1.0 3.0 119 chr3R 28888773 intron Doa + chr3R 28888832 intron Doa + chr3R 28888892 intron Doa + chr3R_6_28885001 chr3R_28885001 RAL-707 1795 chr3R 28935606 28935635 chr3R 28935694 28935723 13 88 1.5 3.0 2.2 4.1 117 chr3R 28935606 intron CG14521 - chr3R 28935664 intron CG14521 - chr3R 28935723 intron CG14521 - chr3R_13_28935001 chr3R_28935001 RAL-707 1796 chr3R 29009959 29009978 chr3R 29010065 29010084 6 106 0.5 5.5 3.0 1.5 125 chr3R 29009959 intron wat - chr3R 29010022 intron wat - chr3R 29010084 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-707 1797 chr3R 21907534 21907536 chr3R 29013340 29013340 15 7105805 23.5 9.5 16.5 0.9 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_15_25460001 chr3R_25460001 RAL-707 1798 chr3R 29067614 29067635 chr3R 29067760 29067783 4 146 3.5 0.0 1.8 1.4 169 chr3R 29067614 intron CG11873 + chr3R 29067698 intron CG11873 + chr3R 29067783 intron CG11873 + chr3R_4_29065001 chr3R_29065001 RAL-707 1799 chr3R 29079378 29079410 chr3R 29080750 29080782 NOF 13 1372 2.0 3.0 2.5 3.7 1404 chr3R 29079378 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_13_29080001 chr3R_29080001 RAL-707 1800 chr3R 29195976 29196003 chr3R 29196055 29196082 5 78 1.5 1.0 1.2 2.3 106 chr3R 29195976 intergenic not near genes chr3R 29196029 intergenic not near genes chr3R 29196082 intergenic not near genes chr3R_5_29195001 chr3R_29195001 RAL-707 1801 chr3R 29213059 29213086 chr3R 29213142 29213169 5 83 5.0 1.5 3.2 1.2 110 chr3R 29213059 intergenic not near genes chr3R 29213114 intergenic not near genes chr3R 29213169 intergenic not near genes chr3R_5_29210001 chr3R_29210001 RAL-707 1802 chr3R 29237262 29237282 chr3R 29239283 29239303 4 2021 14.5 6.0 10.2 0.4 2041 chr3R 29237262 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-707 1803 chr3R 29239225 29239249 chr3R 29245513 29245539 8 6290 3.0 24.5 13.8 0.5 6314 chr3R 29239225 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_8_29240001 chr3R_29240001 RAL-707 1804 chr3R 29319823 29319844 chr3R 29320142 29320163 jockey 6 319 1.5 1.5 1.5 2.4 340 chr3R 29319823 intergenic Cnx99A - chr3R 29319993 intergenic Cnx99A - chr3R 29320163 intergenic not near genes chr3R_6_29315001 chr3R_29315001 RAL-707 1805 chr3R 29332347 29332381 chr3R 29332435 29332466 9 87 0.0 2.5 1.2 4.1 119 chr3R 29332347 intergenic not near genes chr3R 29332406 intergenic not near genes chr3R 29332466 intergenic not near genes chr3R_9_29330001 chr3R_29330001 RAL-707 1806 chr3R 29356057 29356082 chr3R 29356131 29356163 7 80 1.0 1.5 1.2 3.2 106 chr3R 29356057 intergenic CR45547 - chr3R 29356110 intergenic CR45547 - chr3R 29356163 3` UTR CR45547 - chr3R_7_29355001 chr3R_29355001 RAL-707 1807 chr3R 29406616 29406649 chr3R 29407902 29407935 jockey 7 1286 2.5 2.5 2.5 2.0 1319 chr3R 29406616 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-707 1808 chr3R 29472012 29472038 chr3R 29472104 29472129 7 92 1.5 0.5 1.0 3.5 117 chr3R 29472012 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-707 1809 chr3R 29474427 29474438 chr3R 29474514 29474525 7 87 1.5 2.0 1.8 2.5 98 chr3R 29474427 intron Ptp99A + chr3R 29474476 intron Ptp99A + chr3R 29474525 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-707 1810 chr3R 29539431 29539461 chr3R 29539507 29539536 15 76 2.5 0.0 1.2 6.8 105 chr3R 29539431 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539536 intergenic not near genes chr3R_15_29535001 chr3R_29535001 RAL-707 1811 chr3R 29550255 29550270 chr3R 29550336 29550351 10 81 6.5 2.0 4.2 1.9 96 chr3R 29550255 intergenic not near genes chr3R 29550303 intergenic not near genes chr3R 29550351 intergenic not near genes chr3R_10_29550001 chr3R_29550001 RAL-707 1812 chr3R 29590375 29590396 chr3R 29590468 29590488 12 92 2.5 4.0 3.2 2.9 113 chr3R 29590375 intron CG31041 - chr3R 29590432 intron CG31041 - chr3R 29590488 intron CG31041 - chr3R_12_29590001 chr3R_29590001 RAL-707 1813 chr3R 29615088 29615112 chr3R 29615169 29615193 6 80 1.0 1.0 1.0 3.0 105 chr3R 29615088 intron alph + chr3R 29615140 intron alph + chr3R 29615193 intron alph + chr3R_6_29615001 chr3R_29615001 RAL-707 1814 chr3R 29627560 29627595 chr3R 29627651 29627685 4 91 2.5 5.0 3.8 0.8 125 chr3R 29627560 intergenic not near genes chr3R 29627622 intergenic not near genes chr3R 29627685 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-707 1815 chr3R 29719403 29719431 chr3R 29719489 29719517 7 86 1.0 2.5 1.8 2.5 114 chr3R 29719403 intron CG15506 + chr3R 29719460 intron CG15506 + chr3R 29719517 intron CG15506 + chr3R_7_29715001 chr3R_29715001 RAL-707 1816 chr3R 29738273 29738297 chr3R 29739740 29739763 hobo 5 1466 1.5 4.5 3.0 1.2 1490 chr3R 29738273 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-707 1817 chr3R 29769683 29769712 chr3R 29769765 29769793 6 82 4.5 1.5 3.0 1.5 110 chr3R 29769683 intron kay + chr3R 29769738 intron kay + chr3R 29769793 intron kay + chr3R_6_29765001 chr3R_29765001 RAL-707 1818 chr3R 29880582 29880610 chr3R 29880667 29880695 5 84 5.5 0.5 3.0 1.2 113 chr3R 29880582 intron CG31038 + chr3R 29880638 intron CG31038 + chr3R 29880695 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-707 1819 chr3R 29882025 29882051 chr3R 29891182 29891208 roo 12 9157 2.5 5.5 4.0 2.4 9183 chr3R 29882025 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_12_29885001 chr3R_29885001 RAL-707 1820 chr3R 29923607 29923634 chr3R 29925454 29925481 8 1848 4.0 20.5 12.2 0.6 1874 chr3R 29923607 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924544 exon Jon99Cii - chr3R 29925481 exon Jon99Ci - chr3R_8_29920001 chr3R_29920001 RAL-707 1821 chr3R 29950576 29950600 chr3R 29950653 29950675 10 76 1.0 1.0 1.0 5.0 99 chr3R 29950576 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950675 intergenic TkR99D - chr3R_10_29950001 chr3R_29950001 RAL-707 1822 chr3R 29963487 29963512 chr3R 29963586 29963614 7 101 0.0 4.0 2.0 2.3 127 chr3R 29963487 intron TkR99D - chr3R 29963550 intron TkR99D - chr3R 29963614 intron TkR99D - chr3R_7_29960001 chr3R_29960001 RAL-707 1823 chr3R 29966059 29966068 chr3R 29966143 29966153 6 85 5.0 2.0 3.5 1.3 94 chr3R 29966059 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966153 intron TkR99D - chr3R_6_29965001 chr3R_29965001 RAL-707 1824 chr3R 30013675 30013707 chr3R 30013758 30013790 11 83 2.0 2.0 2.0 3.7 115 chr3R 30013675 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013790 intron CG7920 - chr3R_11_30010001 chr3R_30010001 RAL-707 1825 chr3R 30084853 30084886 chr3R 30086319 30086353 hobo 7 1467 0.0 2.5 1.2 3.2 1500 chr3R 30084853 intron sima + chr3R 30085603 intron sima + chr3R 30086353 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-707 1826 chr3R 30088614 30088635 chr3R 30088700 30088721 4 86 0.0 1.5 0.8 2.2 107 chr3R 30088614 intron sima + chr3R 30088668 intron sima + chr3R 30088721 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-707 1827 chr3R 30136966 30136980 chr3R 30137045 30137059 6 79 1.5 7.0 4.2 1.2 93 chr3R 30136966 exon AdoR - chr3R 30137012 intron AdoR - chr3R 30137059 intron AdoR - chr3R_6_30135001 chr3R_30135001 RAL-707 1828 chr3R 30181356 30181368 chr3R 30181442 30181454 4 86 0.5 0.0 0.2 3.3 98 chr3R 30181356 3` UTR Bet5 + chr3R 30181405 3` UTR Bet5 + chr3R 30181454 3` UTR Bet5 + chr3R_4_30180001 chr3R_30180001 RAL-707 1829 chr3R 30224648 30224671 chr3R 30224726 30224749 4 78 2.0 2.5 2.2 1.2 101 chr3R 30224648 intergenic not near genes chr3R 30224698 intergenic not near genes chr3R 30224749 intergenic not near genes chr3R_4_30220001 chr3R_30220001 RAL-707 1830 chr3R 30238762 30238796 chr3R 30239926 30239960 1360 6 1163 2.0 1.0 1.5 2.4 1198 chr3R 30238762 intergenic not near genes chr3R 30239361 intergenic not near genes chr3R 30239960 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-707 1831 chr3R 30262574 30262606 chr3R 30262671 30262703 10 97 2.0 1.5 1.8 3.6 129 chr3R 30262574 intergenic not near genes chr3R 30262638 intergenic not near genes chr3R 30262703 intergenic not near genes chr3R_10_30260001 chr3R_30260001 RAL-707 1832 chr3R 30364850 30364866 chr3R 30365022 30365039 7 173 2.0 3.5 2.8 1.8 189 chr3R 30364850 3` UTR hdc + chr3R 30364944 3` UTR hdc + chr3R 30365039 3` UTR hdc + chr3R_7_30360001 chr3R_30360001 RAL-707 1833 chr3R 30375555 30375571 chr3R 30383180 30383196 412 4 7625 2.0 5.5 3.8 0.8 7641 chr3R 30375555 intergenic not near genes chr3R 30379376 intergenic not near genes chr3R 30383196 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-707 1834 chr3R 30396215 30396245 chr3R 30404481 30404510 roo 9 8266 1.5 2.0 1.8 3.2 8295 chr3R 30396215 intergenic not near genes chr3R 30400362 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_9_30400001 chr3R_30400001 RAL-707 1835 chr3R 30440687 30440714 chr3R 30440946 30440973 12 259 7.0 4.0 5.5 1.8 286 chr3R 30440687 intron CG15537 - chr3R 30440830 intron CG15537 - chr3R 30440973 intron CG15537 - chr3R_12_30440001 chr3R_30440001 RAL-707 1836 chr3R 30456397 30456420 chr3R 30456477 30456500 15 79 1.5 1.5 1.5 6.0 103 chr3R 30456397 intergenic CG2224 - chr3R 30456448 3` UTR CG2224 - chr3R 30456500 3` UTR CG2224 - chr3R_15_30455001 chr3R_30455001 RAL-707 1837 chr3R 30458012 30458047 chr3R 30458092 30458127 12 80 2.5 3.5 3.0 3.0 115 chr3R 30458012 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-707 1838 chr3R 30471900 30471936 chr3R 30471975 30472012 9 76 2.5 1.0 1.8 3.2 112 chr3R 30471900 intron PH4alphaEFB + chr3R 30471956 intron PH4alphaEFB + chr3R 30472012 intron PH4alphaEFB + chr3R_9_30470001 chr3R_30470001 RAL-707 1839 chr3R 30480473 30480507 chr3R 30482941 30482975 jockey 14 2468 5.5 1.5 3.5 3.1 2502 chr3R 30480473 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_14_30480001 chr3R_30480001 RAL-707 1840 chr3R 30495171 30495190 chr3R 30495291 30495308 9 119 2.0 4.0 3.0 2.2 137 chr3R 30495171 intron PH4alphaMP - chr3R 30495240 intron PH4alphaMP - chr3R 30495308 intron PH4alphaMP - chr3R_9_30495001 chr3R_30495001 RAL-707 1841 chr3R 30498419 30498435 chr3R 30498619 30498635 6 200 0.0 4.0 2.0 2.0 216 chr3R 30498419 intron PH4alphaNE1 - chr3R 30498527 intron PH4alphaNE1 - chr3R 30498635 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-707 1842 chr3R 30544654 30544689 chr3R 30544734 30544769 11 79 1.0 2.5 1.8 3.9 115 chr3R 30544654 intron tmod + chr3R 30544712 intron tmod + chr3R 30544769 intron tmod + chr3R_11_30540001 chr3R_30540001 RAL-707 1843 chr3R 30551271 30551294 chr3R 30551355 30551378 5 84 1.0 2.0 1.5 2.0 107 chr3R 30551271 intron tmod + chr3R 30551324 intron tmod + chr3R 30551378 intron tmod + chr3R_5_30550001 chr3R_30550001 RAL-707 1844 chr3R 30592507 30592534 chr3R 30592617 30592644 8 110 4.0 5.0 4.5 1.5 137 chr3R 30592507 intergenic CG2246 - chr3R 30592576 intergenic CG2246 - chr3R 30592644 intergenic CG2246 - chr3R_8_30590001 chr3R_30590001 RAL-707 1845 chr3R 30627608 30627639 chr3R 30627688 30627719 16 79 2.5 4.0 3.2 3.8 111 chr3R 30627608 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627719 exon CG2267 - chr3R_16_30625001 chr3R_30625001 RAL-707 1846 chr3R 30679517 30679538 chr3R 30686986 30687007 blood 7 7469 3.5 1.5 2.5 2.0 7490 chr3R 30679517 intergenic not near genes chr3R 30683262 intergenic not near genes chr3R 30687007 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-707 1847 chr3R 30690162 30690190 chr3R 30690246 30690274 10 84 2.5 2.0 2.2 3.1 112 chr3R 30690162 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690274 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-707 1848 chr3R 30985694 30985712 chr3R 30985779 30985797 6 85 1.5 1.5 1.5 2.4 103 chr3R 30985694 intron 5-HT7 - chr3R 30985746 intron 5-HT7 - chr3R 30985797 intron 5-HT7 - chr3R_6_30985001 chr3R_30985001 RAL-707 1849 chr3R 31042111 31042143 chr3R 31042198 31042230 14 87 2.0 2.5 2.2 4.4 119 chr3R 31042111 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_14_31040001 chr3R_31040001 RAL-707 1850 chr3R 31067026 31067053 chr3R 31067153 31067180 15 127 1.5 5.5 3.5 3.3 154 chr3R 31067026 intron Sox100B + chr3R 31067103 intron Sox100B + chr3R 31067180 intron Sox100B + chr3R_15_31065001 chr3R_31065001 RAL-707 1851 chr3R 31074234 31074262 chr3R 31081831 31081860 springer 8 7598 2.0 2.0 2.0 2.7 7626 chr3R 31074234 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_8_31075001 chr3R_31075001 RAL-707 1852 chr3R 31146748 31146784 chr3R 31146826 31146861 15 78 2.5 1.0 1.8 5.4 113 chr3R 31146748 intron Gycbeta100B + chr3R 31146804 intron Gycbeta100B + chr3R 31146861 intron Gycbeta100B + chr3R_15_31145001 chr3R_31145001 RAL-707 1853 chr3R 31270905 31270906 chr3R 31270985 31270988 4 81 6.0 0.0 3.0 1.0 83 chr3R 31270905 intergenic not near genes chr3R 31270946 intergenic not near genes chr3R 31270988 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-707 1854 chr3R 31274363 31274394 chr3R 31274441 31274472 13 78 3.5 4.0 3.8 2.7 109 chr3R 31274363 intergenic not near genes chr3R 31274418 intergenic not near genes chr3R 31274472 intergenic not near genes chr3R_13_31270001 chr3R_31270001 RAL-707 1855 chr3R 31279379 31279408 chr3R 31285570 31285598 diver 6 6190 2.0 3.5 2.8 1.6 6219 chr3R 31279379 intergenic not near genes chr3R 31282488 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-707 1856 chr3R 31348056 31348089 chr3R 31348133 31348166 13 77 3.0 4.5 3.8 2.7 110 chr3R 31348056 intron CG34347 + chr3R 31348111 intron CG34347 + chr3R 31348166 intron CG34347 + chr3R_13_31345001 chr3R_31345001 RAL-707 1857 chr3R 31412709 31412736 chr3R 31412802 31412829 8 93 1.5 3.5 2.5 2.3 120 chr3R 31412709 intron Gprk2 + chr3R 31412769 intron Gprk2 + chr3R 31412829 intron Gprk2 + chr3R_8_31410001 chr3R_31410001 RAL-707 1858 chr3R 31413087 31413118 chr3R 31418287 31418318 copia 12 5200 4.5 0.0 2.2 3.8 5231 chr3R 31413087 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-707 1859 chr3R 31435364 31435391 chr3R 31435516 31435543 8 152 4.0 2.0 3.0 2.0 179 chr3R 31435364 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-707 1860 chr3R 31606142 31606170 chr3R 31606304 31606331 8 162 2.0 0.0 1.0 4.0 189 chr3R 31606142 intron CycG - chr3R 31606236 intron CycG - chr3R 31606331 intron CycG - chr3R_8_31605001 chr3R_31605001 RAL-707 1861 chr3R 31630064 31630086 chr3R 31630169 31630191 10 105 1.5 3.0 2.2 3.1 127 chr3R 31630064 intron kek6 + chr3R 31630128 intron kek6 + chr3R 31630191 intron kek6 + chr3R_10_31630001 chr3R_31630001 RAL-707 1862 chr3R 31691533 31691560 chr3R 31696299 31696326 Doc 9 4766 5.5 7.5 6.5 1.2 4793 chr3R 31691533 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-707 1863 chr3R 31726666 31726690 chr3R 31726752 31726776 9 85 0.5 4.5 2.5 2.6 110 chr3R 31726666 intron ttk + chr3R 31726721 intron ttk + chr3R 31726776 intron ttk + chr3R_9_31725001 chr3R_31725001 RAL-707 1864 chr3R 31851230 31851263 chr3R 31851313 31851346 8 83 1.5 2.5 2.0 2.7 116 chr3R 31851230 intergenic heph - chr3R 31851288 intergenic heph - chr3R 31851346 intergenic heph - chr3R_8_31850001 chr3R_31850001 RAL-707 1865 chr3R 31880301 31880323 chr3R 31880377 31880398 9 75 3.5 5.0 4.2 1.7 97 chr3R 31880301 intron heph - chr3R 31880350 intron heph - chr3R 31880398 intron heph - chr3R_9_31880001 chr3R_31880001 RAL-707 1866 chr3R 31911679 31911807 chr3R 31911765 31911893 20 86 0.5 0.5 0.5 13.3 214 chr3R 31911679 intron heph - chr3R 31911786 intron heph - chr3R 31911893 intron heph - chr3R_20_31910001 chr3R_31910001 RAL-707 1867 chr3R 31924600 31924606 chr3R 31924681 31924687 5 81 0.0 3.5 1.8 1.8 87 chr3R 31924600 intron heph - chr3R 31924644 intron heph - chr3R 31924687 intron heph - chr3R_5_31920001 chr3R_31920001 RAL-707 1868 chr3R 31931198 31931215 chr3R 31931278 31931298 4 82 2.0 2.5 2.2 1.2 100 chr3R 31931198 intron heph - chr3R 31931248 intron heph - chr3R 31931298 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-707 1869 chr3R 31953144 31953178 chr3R 31953222 31953256 7 78 2.0 4.0 3.0 1.8 112 chr3R 31953144 intron heph - chr3R 31953200 intron heph - chr3R 31953256 intron heph - chr3R_7_31950001 chr3R_31950001 RAL-707 1870 chr3R 31997995 31998025 chr3R 32005465 32005495 blood 12 7470 2.5 2.0 2.2 3.8 7500 chr3R 31997995 intron heph - chr3R 32001745 intron heph - chr3R 32005495 intron heph - chr3R_12_32000001 chr3R_32000001 RAL-707 1871 chr3R 32013272 32013309 chr3R 32013390 32013427 9 118 1.5 0.0 0.8 5.0 155 chr3R 32013272 intron,5` UTR heph -,CR45556 + chr3R 32013350 intron,5` UTR heph -,CR45556 + chr3R 32013427 intron heph - chr3R_9_32010001 chr3R_32010001 RAL-707 1872 chr3R 32039963 32039995 chr3R 32040064 32040096 7 101 2.5 1.5 2.0 2.3 133 chr3R 32039963 intergenic CG2053 + chr3R 32040030 intergenic CG2053 + chr3R 32040096 intergenic CG2053 + chr3R_7_32040001 chr3R_32040001 RAL-707 1873 chr4 97485 97501 chr4 97618 97634 4 133 11.5 9.0 10.2 0.4 149 chr4 97485 intron pan + chr4 97560 intron pan + chr4 97634 intron pan + chr4_4_95001 chr4_95001 RAL-707 1874 chr4 257402 257438 chr4 257572 257608 7 170 1.5 4.5 3.0 1.8 206 chr4 257402 exon RhoGAP102A + chr4 257505 intron RhoGAP102A + chr4 257608 intron RhoGAP102A + chr4_7_255001 chr4_255001 RAL-707 1875 chr4 280829 280836 chr4 281457 281466 4 630 2.0 4.0 3.0 1.0 637 chr4 280829 intron Syt7 - chr4 281148 intron Syt7 - chr4 281466 intron Syt7 - chr4_4_280001 chr4_280001 RAL-707 1876 chr4 671603 671636 chr4 680186 680219 Tirant 12 8583 6.0 7.5 6.8 1.5 8616 chr4 671603 intron CG11360 + chr4 675911 intron CG11360 + chr4 680219 intron CG11360 + chr4_12_675001 chr4_675001 RAL-707 1877 chr4 1231230 1231249 chr4 1231362 1231381 5 132 2.0 1.0 1.5 2.0 151 chr4 1231230 intron Caps + chr4 1231306 intron Caps + chr4 1231381 intron Caps + chr4_5_1230001 chr4_1230001 RAL-707 1878 chrX 295859 295866 chrX 303479 303486 412 4 7620 1.5 1.5 1.5 1.6 7627 chrX 295859 intron CG3777 + chrX 299672 intron CG3777 + chrX 303486 intron CG3777 + chrX_4_295001 chrX_295001 RAL-707 1879 chrX 318471 318491 chrX 323557 323577 flea 5 5086 3.5 2.5 3.0 1.2 5106 chrX 318471 intron,intron CG3777 +,CG32816 - chrX 321024 intron,intron CG3777 +,CG32816 - chrX 323577 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-707 1880 chrX 428419 428451 chrX 434604 434636 3S18 14 6185 2.0 1.5 1.8 5.0 6217 chrX 428419 intron CG32816 - chrX 431528 intron CG32816 - chrX 434636 intron CG32816 - chrX_14_430001 chrX_430001 RAL-707 1881 chrX 551427 551450 chrX 558989 559012 412 9 7561 2.5 1.0 1.8 3.2 7585 chrX 551427 intron Appl + chrX 555220 intron Appl + chrX 559012 intron Appl + chrX_9_555001 chrX_555001 RAL-707 1882 chrX 569344 569375 chrX 569459 569490 6 114 2.5 3.0 2.8 1.6 146 chrX 569344 intron Appl + chrX 569417 intron Appl + chrX 569490 intron Appl + chrX_6_565001 chrX_565001 RAL-707 1883 chrX 611138 611168 chrX 611228 611258 9 90 2.5 2.5 2.5 2.6 120 chrX 611138 intron CG13366 - chrX 611198 intron CG13366 - chrX 611258 intron CG13366 - chrX_9_610001 chrX_610001 RAL-707 1884 chrX 667647 667681 chrX 667731 667765 9 84 3.5 2.5 3.0 2.2 118 chrX 667647 intergenic not near genes chrX 667706 intergenic not near genes chrX 667765 intergenic not near genes chrX_9_665001 chrX_665001 RAL-707 1885 chrX 680837 680871 chrX 680920 680953 9 82 1.5 4.0 2.8 2.4 116 chrX 680837 intergenic not near genes chrX 680895 intergenic not near genes chrX 680953 intergenic not near genes chrX_9_680001 chrX_680001 RAL-707 1886 chrX 706805 706826 chrX 707169 707190 4 364 0.0 3.0 1.5 1.6 385 chrX 706805 intron sdk + chrX 706998 intron sdk + chrX 707190 intron sdk + chrX_4_705001 chrX_705001 RAL-707 1887 chrX 778139 778153 chrX 778229 778243 9 90 2.0 1.0 1.5 3.6 104 chrX 778139 intron fz3 + chrX 778191 intron fz3 + chrX 778243 intron fz3 + chrX_9_775001 chrX_775001 RAL-707 1888 chrX 780591 780602 chrX 780667 780677 6 76 4.5 0.0 2.2 1.9 86 chrX 780591 intron fz3 + chrX 780634 intron fz3 + chrX 780677 intron fz3 + chrX_6_780001 chrX_780001 RAL-707 1889 chrX 802290 802320 chrX 802364 802397 6 76 4.0 2.0 3.0 1.5 107 chrX 802290 exon CG13359 - chrX 802344 exon CG13359 - chrX 802397 exon CG13359 - chrX_6_800001 chrX_800001 RAL-707 1890 chrX 806782 806817 chrX 806878 806913 10 96 2.0 2.0 2.0 3.3 131 chrX 806782 intron Sec22 + chrX 806848 intron Sec22 + chrX 806913 intron Sec22 + chrX_10_805001 chrX_805001 RAL-707 1891 chrX 827602 827634 chrX 835393 835425 roo 9 7792 3.0 1.5 2.2 2.8 7823 chrX 827602 intron CG43867 - chrX 831514 intron CG43867 - chrX 835425 intron CG43867 - chrX_9_830001 chrX_830001 RAL-707 1892 chrX 868502 868518 chrX 868579 868595 5 77 3.5 6.0 4.8 0.9 93 chrX 868502 intron CG43867 - chrX 868548 intron CG43867 - chrX 868595 intron CG43867 - chrX_5_865001 chrX_865001 RAL-707 1893 chrX 906703 906720 chrX 908492 908509 S-element 5 1789 2.5 5.0 3.8 1.0 1806 chrX 906703 intron CG43867 - chrX 907606 intron CG43867 - chrX 908509 intron CG43867 - chrX_5_905001 chrX_905001 RAL-707 1894 chrX 1053117 1053123 chrX 16983076 16983076 13 15929958 10.0 4.0 7.0 1.6 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_13_9015001 chrX_9015001 RAL-707 1895 chrX 1150268 1150287 chrX 1150431 1150450 8 163 1.5 6.5 4.0 1.6 182 chrX 1150268 intergenic not near genes chrX 1150359 intergenic not near genes chrX 1150450 intergenic not near genes chrX_8_1150001 chrX_1150001 RAL-707 1896 chrX 1163296 1163330 chrX 1163374 1163408 10 78 0.5 2.5 1.5 4.0 112 chrX 1163296 intergenic CG34320 - chrX 1163352 intergenic CG34320 - chrX 1163408 intergenic CG34320 - chrX_10_1160001 chrX_1160001 RAL-707 1897 chrX 1169771 1169787 chrX 1169855 1169872 7 85 3.5 5.0 4.2 1.3 101 chrX 1169771 intergenic not near genes chrX 1169822 intergenic not near genes chrX 1169872 intergenic not near genes chrX_7_1165001 chrX_1165001 RAL-707 1898 chrX 1357774 1357800 chrX 1367941 1367970 Doc 8 10170 2.5 1.0 1.8 2.9 10196 chrX 1357774 intergenic png - chrX 1362872 intergenic not near genes chrX 1367970 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-707 1899 chrX 1518042 1518071 chrX 1523444 1523473 jockey 8 5401 2.0 1.5 1.8 2.9 5431 chrX 1518042 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523473 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-707 1900 chrX 1758777 1758808 chrX 1758851 1758880 5 75 2.0 2.0 2.0 1.7 103 chrX 1758777 intergenic not near genes chrX 1758828 intergenic not near genes chrX 1758880 intergenic not near genes chrX_5_1755001 chrX_1755001 RAL-707 1901 chrX 1930546 1930566 chrX 1938117 1938136 opus 4 7570 1.5 1.0 1.2 1.8 7590 chrX 1930546 intergenic CG11596 + chrX 1934341 intergenic not near genes chrX 1938136 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-707 1902 chrX 2142149 2142182 chrX 2142227 2142260 9 78 3.0 2.5 2.8 2.4 111 chrX 2142149 intron CG3835 + chrX 2142204 intron CG3835 + chrX 2142260 intron CG3835 + chrX_9_2140001 chrX_2140001 RAL-707 1903 chrX 2320472 2320499 chrX 2320549 2320576 4 77 0.5 1.0 0.8 2.2 104 chrX 2320472 intron phl + chrX 2320524 intron phl + chrX 2320576 intron phl + chrX_4_2320001 chrX_2320001 RAL-707 1904 chrX 2397922 2397929 chrX 2398016 2398023 4 94 2.0 0.0 1.0 2.0 101 chrX 2397922 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398023 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-707 1905 chrX 2399836 2399867 chrX 2408188 2408220 roo 6 8353 3.0 3.5 3.2 1.4 8384 chrX 2399836 intergenic not near genes chrX 2404028 intergenic not near genes chrX 2408220 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-707 1906 chrX 2578815 2578842 chrX 2578906 2578934 9 92 1.0 1.5 1.2 4.1 119 chrX 2578815 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578934 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-707 1907 chrX 2610383 2610390 chrX 2617500 2617507 HMS-Beagle 4 7117 2.5 0.5 1.5 1.6 7124 chrX 2610383 intergenic CG8636 - chrX 2613945 intergenic not near genes chrX 2617507 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-707 1908 chrX 2635377 2635393 chrX 2635486 2635501 6 109 2.0 1.0 1.5 2.4 124 chrX 2635377 intron sgg + chrX 2635439 intron sgg + chrX 2635501 intron sgg + chrX_6_2635001 chrX_2635001 RAL-707 1909 chrX 2664397 2664415 chrX 2665543 2665561 1360 4 1146 2.0 3.0 2.5 1.1 1164 chrX 2664397 intron sgg + chrX 2664979 intron sgg + chrX 2665561 intron sgg + chrX_4_2660001 chrX_2660001 RAL-707 1910 chrX 2888111 2888138 chrX 2888189 2888216 7 78 2.0 1.5 1.8 2.5 105 chrX 2888111 intron kirre + chrX 2888164 intron kirre + chrX 2888216 intron kirre + chrX_7_2885001 chrX_2885001 RAL-707 1911 chrX 3107227 3107233 chrX 16983076 16983077 6 13875847 4.5 4.0 4.2 1.2 13875850 chrX 3107227 intron kirre + chrX 10045152 intron,3` UTR Cht6 +,CR45185 - chrX 16983077 intron CG45002 - chrX_6_10045001 chrX_10045001 RAL-707 1912 chrX 3111074 3111085 chrX 3111154 3111165 6 80 2.0 0.0 1.0 3.0 91 chrX 3111074 intron kirre + chrX 3111120 intron kirre + chrX 3111165 intron kirre + chrX_6_3110001 chrX_3110001 RAL-707 1913 chrX 3408984 3409016 chrX 3409061 3409093 9 77 0.5 3.5 2.0 3.0 109 chrX 3408984 intron,intron CR44999 +,CG12535 - chrX 3409038 intron,intron CR44999 +,CG12535 - chrX 3409093 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-707 1914 chrX 3493089 3493124 chrX 3502248 3502283 roo 6 9159 3.0 0.0 1.5 2.4 9194 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502283 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-707 1915 chrX 3535408 3535432 chrX 3535499 3535523 4 91 2.5 1.5 2.0 1.3 115 chrX 3535408 intron CG32791 - chrX 3535466 intron CG32791 - chrX 3535523 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-707 1916 chrX 3537395 3537411 chrX 3537472 3537488 5 77 3.0 3.0 3.0 1.2 93 chrX 3537395 intron CG32791 - chrX 3537442 intron CG32791 - chrX 3537488 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-707 1917 chrX 3620460 3620490 chrX 3620559 3620588 4 98 1.5 2.0 1.8 1.4 128 chrX 3620460 intron AstA-R1 + chrX 3620524 intron AstA-R1 + chrX 3620588 intron AstA-R1 + chrX_4_3620001 chrX_3620001 RAL-707 1918 chrX 3630544 3630572 chrX 3630620 3630648 6 76 2.5 2.0 2.2 1.9 104 chrX 3630544 intron AstA-R1 + chrX 3630596 intron AstA-R1 + chrX 3630648 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-707 1919 chrX 3662487 3662514 chrX 3662571 3662598 4 84 2.5 0.0 1.2 1.8 111 chrX 3662487 intron AstA-R1 + chrX 3662542 intron AstA-R1 + chrX 3662598 intron AstA-R1 + chrX_4_3660001 chrX_3660001 RAL-707 1920 chrX 3866114 3866134 chrX 3866192 3866212 4 78 1.5 2.0 1.8 1.4 98 chrX 3866114 intron yin - chrX 3866163 intron yin - chrX 3866212 intron yin - chrX_4_3865001 chrX_3865001 RAL-707 1921 chrX 3880462 3880486 chrX 3880548 3880568 5 85 1.0 1.5 1.2 2.3 106 chrX 3880462 intergenic VhaAC39-1 + chrX 3880515 intergenic VhaAC39-1 + chrX 3880568 intergenic VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-707 1922 chrX 3881268 3881304 chrX 3881407 3881443 12 139 1.0 0.5 0.8 6.7 175 chrX 3881268 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_12_3880001 chrX_3880001 RAL-707 1923 chrX 3915520 3915552 chrX 3915607 3915639 7 87 2.0 1.5 1.8 2.5 119 chrX 3915520 intron CG42541 - chrX 3915580 intron CG42541 - chrX 3915639 intron CG42541 - chrX_7_3915001 chrX_3915001 RAL-707 1924 chrX 3986861 3986892 chrX 3994494 3994524 412 9 7632 3.5 1.5 2.5 2.6 7663 chrX 3986861 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994524 intergenic not near genes chrX_9_3990001 chrX_3990001 RAL-707 1925 chrX 4048506 4048528 chrX 4048582 4048604 6 76 3.0 2.5 2.8 1.6 98 chrX 4048506 3` UTR CR45482 - chrX 4048555 3` UTR CR45482 - chrX 4048604 3` UTR CR45482 - chrX_6_4045001 chrX_4045001 RAL-707 1926 chrX 4132666 4132697 chrX 4132832 4132865 5 167 2.0 0.5 1.2 2.3 199 chrX 4132666 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132865 intergenic Fas2 -,GlcAT-I + chrX_5_4130001 chrX_4130001 RAL-707 1927 chrX 4157903 4157925 chrX 4164938 4164960 297 6 7034 1.5 3.0 2.2 1.9 7057 chrX 4157903 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164960 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-707 1928 chrX 4184281 4184308 chrX 4184400 4184428 5 120 1.5 1.5 1.5 2.0 147 chrX 4184281 intron Fas2 - chrX 4184354 intron Fas2 - chrX 4184428 intron Fas2 - chrX_5_4180001 chrX_4180001 RAL-707 1929 chrX 4396973 4396999 chrX 4397058 4397083 8 85 3.0 2.5 2.8 2.1 110 chrX 4396973 intron CR32773 - chrX 4397028 intron CR32773 - chrX 4397083 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-707 1930 chrX 4515834 4515852 chrX 4515912 4515930 10 78 1.5 1.0 1.2 4.5 96 chrX 4515834 intron CR32773 - chrX 4515882 intron CR32773 - chrX 4515930 intron CR32773 - chrX_10_4515001 chrX_4515001 RAL-707 1931 chrX 4598903 4598919 chrX 4599494 4599514 6 594 2.0 2.0 2.0 2.0 611 chrX 4598903 intron CR32773 - chrX 4599208 intron CR32773 - chrX 4599514 intron CR32773 - chrX_6_4595001 chrX_4595001 RAL-707 1932 chrX 4757379 4757401 chrX 4757458 4757480 4 79 0.5 1.0 0.8 2.2 101 chrX 4757379 intergenic not near genes chrX 4757430 intergenic not near genes chrX 4757480 intergenic not near genes chrX_4_4755001 chrX_4755001 RAL-707 1933 chrX 4763252 4763284 chrX 4763739 4763772 Stalker4 7 487 1.0 0.5 0.8 3.9 520 chrX 4763252 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763772 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-707 1934 chrX 4792384 4792409 chrX 4792817 4792842 jockey 6 432 2.5 6.0 4.2 1.2 458 chrX 4792384 intergenic not near genes chrX 4792613 intergenic not near genes chrX 4792842 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-707 1935 chrX 4827975 4827995 chrX 4835345 4835366 Stalker4 5 7369 2.0 3.5 2.8 1.3 7391 chrX 4827975 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835366 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-707 1936 chrX 4931349 4931378 chrX 4931443 4931471 8 94 16.0 13.5 14.8 0.5 122 chrX 4931349 intron CG44774 - chrX 4931410 intron CG44774 - chrX 4931471 intron CG44774 - chrX_8_4930001 chrX_4930001 RAL-707 1937 chrX 4943910 4943925 chrX 4944007 4944022 6 97 2.5 3.5 3.0 1.5 112 chrX 4943910 intron Ptp4E + chrX 4943966 intron Ptp4E + chrX 4944022 intron Ptp4E + chrX_6_4940001 chrX_4940001 RAL-707 1938 chrX 4990053 4990076 chrX 4997266 4997290 roo 6 7214 1.5 1.5 1.5 2.4 7237 chrX 4990053 intron CR44833 - chrX 4993672 intron CR44833 - chrX 4997290 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-707 1939 chrX 5055857 5055880 chrX 5055989 5056011 5 132 0.5 0.5 0.5 3.3 154 chrX 5055857 intron,intron CR44833 -,ovo + chrX 5055934 intron,intron CR44833 -,ovo + chrX 5056011 intron,intron CR44833 -,ovo + chrX_5_5055001 chrX_5055001 RAL-707 1940 chrX 5096297 5096304 chrX 5103862 5103869 springer 5 7565 0.5 2.0 1.2 2.3 7572 chrX 5096297 intron,intron CG15465 +,rg + chrX 5100083 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-707 1941 chrX 5220397 5220416 chrX 5220638 5220655 5 240 0.0 3.5 1.8 1.8 258 chrX 5220397 intron,intron CG15465 +,rg + chrX 5220526 intron,intron CG15465 +,rg + chrX 5220655 intron,intron CG15465 +,rg + chrX_5_5220001 chrX_5220001 RAL-707 1942 chrX 5286839 5286863 chrX 5286935 5286957 5 95 2.0 4.5 3.2 1.2 118 chrX 5286839 intergenic not near genes chrX 5286898 intergenic not near genes chrX 5286957 intergenic not near genes chrX_5_5285001 chrX_5285001 RAL-707 1943 chrX 5338712 5338737 chrX 5339965 5339988 jockey 6 1253 0.0 3.0 1.5 2.4 1276 chrX 5338712 intergenic not near genes chrX 5339350 intergenic not near genes chrX 5339988 intergenic SK + chrX_6_5335001 chrX_5335001 RAL-707 1944 chrX 5345416 5345427 chrX 5345527 5345538 5 111 1.0 3.0 2.0 1.7 122 chrX 5345416 intron SK + chrX 5345477 intron SK + chrX 5345538 intron SK + chrX_5_5345001 chrX_5345001 RAL-707 1945 chrX 5435873 5435895 chrX 5436005 5436027 4 132 2.0 2.5 2.2 1.2 154 chrX 5435873 intergenic CR44471 + chrX 5435950 intergenic CR44471 + chrX 5436027 intergenic CR44471 + chrX_4_5435001 chrX_5435001 RAL-707 1946 chrX 5481066 5481091 chrX 5485034 5485059 I-element 8 3968 0.0 1.5 0.8 4.4 3993 chrX 5481066 intron SPR + chrX 5483062 intron SPR + chrX 5485059 intron SPR + chrX_8_5480001 chrX_5480001 RAL-707 1947 chrX 5524850 5524867 chrX 5528713 5528730 412 6 3863 2.5 0.0 1.2 2.7 3880 chrX 5524850 intergenic snoRNA:Psi28S-3342 - chrX 5526790 intergenic not near genes chrX 5528730 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-707 1948 chrX 5884167 5884184 chrX 5884406 5884425 pogo 6 241 6.0 2.0 4.0 1.2 258 chrX 5884167 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884425 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-707 1949 chrX 6003280 6003309 chrX 6003361 6003389 6 81 0.0 1.0 0.5 4.0 109 chrX 6003280 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003389 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-707 1950 chrX 6171592 6171616 chrX 6179025 6179049 Quasimodo 6 7433 1.0 2.5 1.8 2.1 7457 chrX 6171592 intron Ca-alpha1T - chrX 6175320 intron Ca-alpha1T - chrX 6179049 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-707 1951 chrX 6335216 6335244 chrX 6337725 6337754 Tirant 5 2509 0.0 1.5 0.8 2.8 2538 chrX 6335216 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-707 1952 chrX 6370564 6370574 chrX 6370663 6370673 4 99 1.0 2.5 1.8 1.4 109 chrX 6370564 3` UTR Marf + chrX 6370618 3` UTR,3` UTR Marf +,CR44816 - chrX 6370673 3` UTR,3` UTR Marf +,CR44816 - chrX_4_6370001 chrX_6370001 RAL-707 1953 chrX 6392864 6392898 chrX 6397628 6397663 Doc 8 4765 1.0 0.5 0.8 4.4 4799 chrX 6392864 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397663 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-707 1954 chrX 6562817 6562847 chrX 6571298 6571324 Tirant 12 8480 5.5 3.0 4.2 2.3 8507 chrX 6562817 intron CG34417 + chrX 6567070 intron CG34417 + chrX 6571324 intron CG34417 + chrX_12_6565001 chrX_6565001 RAL-707 1955 chrX 6605479 6605506 chrX 6608501 6608528 Burdock 6 3020 1.5 2.0 1.8 2.1 3049 chrX 6605479 intron pigs + chrX 6607004 intron pigs + chrX 6608528 intron pigs + chrX_6_6605001 chrX_6605001 RAL-707 1956 chrX 6730967 6730997 chrX 6731345 6731375 9 378 2.5 2.5 2.5 2.6 408 chrX 6730967 intron CG3168 - chrX 6731171 intron CG3168 - chrX 6731375 intron CG3168 - chrX_9_6730001 chrX_6730001 RAL-707 1957 chrX 6737520 6737552 chrX 6737602 6737634 8 81 1.0 0.5 0.8 4.4 114 chrX 6737520 intron CG3168 - chrX 6737577 intron CG3168 - chrX 6737634 intron CG3168 - chrX_8_6735001 chrX_6735001 RAL-707 1958 chrX 6859562 6859571 chrX 6859975 6859984 5 413 2.5 0.0 1.2 2.3 422 chrX 6859562 intron CG14434 - chrX 6859773 intron CG14434 - chrX 6859984 intron CG14434 - chrX_5_6855001 chrX_6855001 RAL-707 1959 chrX 6897577 6897706 chrX 6897655 6897816 11 101 2.0 2.0 2.0 3.7 239 chrX 6897577 intergenic not near genes chrX 6897696 intergenic not near genes chrX 6897816 intergenic not near genes chrX_11_6895001 chrX_6895001 RAL-707 1960 chrX 7023609 7023631 chrX 7030999 7031019 Tabor 6 7390 3.0 1.5 2.2 1.9 7410 chrX 7023609 intron CG12541 - chrX 7027314 intron CG12541 - chrX 7031019 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-707 1961 chrX 7543268 7543294 chrX 7543344 7543370 6 76 1.5 1.0 1.2 2.7 102 chrX 7543268 intron CG32719 - chrX 7543319 intron CG32719 - chrX 7543370 intron CG32719 - chrX_6_7540001 chrX_7540001 RAL-707 1962 chrX 7570637 7570659 chrX 7570771 7570793 7 134 2.5 2.0 2.2 2.2 156 chrX 7570637 intergenic not near genes chrX 7570715 intergenic not near genes chrX 7570793 intergenic not near genes chrX_7_7570001 chrX_7570001 RAL-707 1963 chrX 7681262 7681265 chrX 7681345 7681348 4 83 1.0 0.0 0.5 2.7 86 chrX 7681262 3` UTR CR45665 - chrX 7681305 intergenic CR45665 - chrX 7681348 intergenic CR45665 - chrX_4_7680001 chrX_7680001 RAL-707 1964 chrX 7702909 7702928 chrX 7703346 7703367 jockey 4 438 3.0 1.5 2.2 1.2 458 chrX 7702909 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703367 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-707 1965 chrX 7737165 7737180 chrX 7737247 7737262 4 82 1.0 2.0 1.5 1.6 97 chrX 7737165 5` UTR Tom40 + chrX 7737214 intron Tom40 + chrX 7737262 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-707 1966 chrX 7832432 7832462 chrX 7832521 7832551 4 89 3.0 3.0 3.0 1.0 119 chrX 7832432 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832551 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-707 1967 chrX 7845723 7845739 chrX 7847214 7847230 hopper2 6 1491 3.0 2.5 2.8 1.6 1507 chrX 7845723 intergenic not near genes chrX 7846476 intergenic not near genes chrX 7847230 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-707 1968 chrX 8075138 8075170 chrX 8075247 8075275 9 108 3.5 2.0 2.8 2.4 137 chrX 8075138 exon Upf2 - chrX 8075206 5` UTR Upf2 - chrX 8075275 5` UTR Upf2 - chrX_9_8075001 chrX_8075001 RAL-707 1969 chrX 8085587 8085596 chrX 8085673 8085682 5 86 2.0 3.0 2.5 1.4 95 chrX 8085587 intron,5` UTR CG2256 -,CR45535 + chrX 8085634 intron,5` UTR CG2256 -,CR45535 + chrX 8085682 intron,5` UTR CG2256 -,CR45535 + chrX_5_8085001 chrX_8085001 RAL-707 1970 chrX 8092288 8092320 chrX 8092373 8092405 4 85 0.0 0.5 0.2 3.3 117 chrX 8092288 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092405 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-707 1971 chrX 8364834 8364866 chrX 8365238 8365270 BS 5 404 1.5 2.5 2.0 1.7 436 chrX 8364834 intron nAChRalpha3 - chrX 8365052 intron nAChRalpha3 - chrX 8365270 intron nAChRalpha3 - chrX_5_8365001 chrX_8365001 RAL-707 1972 chrX 8421463 8421494 chrX 8421555 8421586 9 92 2.0 2.5 2.2 2.8 123 chrX 8421463 intron Trf2 + chrX 8421524 intron Trf2 + chrX 8421586 intron Trf2 + chrX_9_8420001 chrX_8420001 RAL-707 1973 chrX 8506535 8506555 chrX 8506742 8506763 5 208 1.0 1.0 1.0 2.5 228 chrX 8506535 intron CG33181 + chrX 8506649 intron CG33181 + chrX 8506763 intron CG33181 + chrX_5_8505001 chrX_8505001 RAL-707 1974 chrX 8513094 8513120 chrX 8513361 8513387 9 267 2.5 3.0 2.8 2.4 293 chrX 8513094 intron CG33181 + chrX 8513240 intron CG33181 + chrX 8513387 intron CG33181 + chrX_9_8510001 chrX_8510001 RAL-707 1975 chrX 8829963 8829972 chrX 8830079 8830090 4 117 3.0 1.0 2.0 1.3 127 chrX 8829963 intergenic not near genes chrX 8830026 intergenic not near genes chrX 8830090 intergenic not near genes chrX_4_8830001 chrX_8830001 RAL-707 1976 chrX 8877785 8877808 chrX 8877909 8877932 4 124 2.5 0.0 1.2 1.8 147 chrX 8877785 intron Moe - chrX 8877858 intron Moe - chrX 8877932 intron Moe - chrX_4_8875001 chrX_8875001 RAL-707 1977 chrX 8922331 8922361 chrX 8922765 8922795 jockey 8 433 1.0 3.5 2.2 2.5 464 chrX 8922331 intron rdgA + chrX 8922563 intron rdgA + chrX 8922795 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-707 1978 chrX 8927591 8927615 chrX 8929860 8929885 NOF 5 2270 2.0 3.0 2.5 1.4 2294 chrX 8927591 intron rdgA + chrX 8928738 intron rdgA + chrX 8929885 intron rdgA + chrX_5_8925001 chrX_8925001 RAL-707 1979 chrX 8931382 8931409 chrX 8931476 8931503 10 94 2.5 2.5 2.5 2.9 121 chrX 8931382 intron rdgA + chrX 8931442 intron rdgA + chrX 8931503 intron rdgA + chrX_10_8930001 chrX_8930001 RAL-707 1980 chrX 8948764 8948789 chrX 8956274 8956299 roo 4 7510 0.0 2.5 1.2 1.8 7535 chrX 8948764 intron rdgA + chrX 8952532 intron rdgA + chrX 8956299 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-707 1981 chrX 9218077 9218087 chrX 9218168 9218178 8 91 4.5 0.5 2.5 2.3 101 chrX 9218077 3` UTR t - chrX 9218128 3` UTR t - chrX 9218178 3` UTR t - chrX_8_9215001 chrX_9215001 RAL-707 1982 chrX 9401309 9401335 chrX 9401417 9401443 5 108 3.5 1.5 2.5 1.4 134 chrX 9401309 intron mgl - chrX 9401376 intron mgl - chrX 9401443 intron mgl - chrX_5_9400001 chrX_9400001 RAL-707 1983 chrX 9476060 9476076 chrX 9476285 9476301 5 225 1.5 1.5 1.5 2.0 241 chrX 9476060 intron mgl - chrX 9476180 intron mgl - chrX 9476301 intron mgl - chrX_5_9475001 chrX_9475001 RAL-707 1984 chrX 9508134 9508166 chrX 9509652 9509684 jockey 8 1518 3.0 2.0 2.5 2.3 1550 chrX 9508134 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509684 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-707 1985 chrX 9543397 9543427 chrX 9543476 9543506 7 79 2.5 1.5 2.0 2.3 109 chrX 9543397 intron CG32700 - chrX 9543452 intron CG32700 - chrX 9543506 intron CG32700 - chrX_7_9540001 chrX_9540001 RAL-707 1986 chrX 9575789 9575813 chrX 9576113 9576137 mdg3 10 324 5.0 3.0 4.0 2.0 348 chrX 9575789 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576137 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-707 1987 chrX 9791880 9791893 chrX 9791977 9791990 4 96 0.5 3.0 1.8 1.4 110 chrX 9791880 intron CG32698 + chrX 9791935 intron CG32698 + chrX 9791990 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-707 1988 chrX 9993352 9993373 chrX 9993500 9993521 7 148 1.0 2.0 1.5 2.8 169 chrX 9993352 intron CG32694 + chrX 9993436 intron CG32694 + chrX 9993521 intron CG32694 + chrX_7_9990001 chrX_9990001 RAL-707 1989 chrX 10216844 10216852 chrX 10216925 10216933 4 81 3.5 7.0 5.2 0.6 89 chrX 10216844 3` UTR l(1)G0230 + chrX 10216888 3` UTR l(1)G0230 + chrX 10216933 3` UTR l(1)G0230 + chrX_4_10215001 chrX_10215001 RAL-707 1990 chrX 10317555 10317570 chrX 10317633 10317648 4 78 2.5 0.5 1.5 1.6 93 chrX 10317555 intron alpha-Man-I - chrX 10317602 intron alpha-Man-I - chrX 10317648 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-707 1991 chrX 10348808 10348829 chrX 10356373 10356394 springer 4 7565 4.0 1.5 2.8 1.1 7586 chrX 10348808 intergenic snoRNA:U3:9B + chrX 10352601 intergenic not near genes chrX 10356394 intergenic l(1)G0289 - chrX_4_10350001 chrX_10350001 RAL-707 1992 chrX 10506502 10506528 chrX 10506587 10506615 7 86 0.0 4.0 2.0 2.3 113 chrX 10506502 intron spri - chrX 10506558 intron spri - chrX 10506615 intron spri - chrX_7_10505001 chrX_10505001 RAL-707 1993 chrX 10532503 10532526 chrX 10532582 10532605 9 79 1.5 2.5 2.0 3.0 102 chrX 10532503 intron spri - chrX 10532554 intron spri - chrX 10532605 intron spri - chrX_9_10530001 chrX_10530001 RAL-707 1994 chrX 10550863 10550886 chrX 10552330 10552353 hobo 7 1467 1.5 1.5 1.5 2.8 1490 chrX 10550863 intron spri - chrX 10551608 intron spri - chrX 10552353 intron spri - chrX_7_10550001 chrX_10550001 RAL-707 1995 chrX 10686051 10686082 chrX 10691188 10691217 roo 11 5137 3.0 3.0 3.0 2.8 5166 chrX 10686051 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691217 intron X11Lbeta + chrX_11_10685001 chrX_10685001 RAL-707 1996 chrX 10694158 10694182 chrX 10694238 10694262 7 80 3.0 3.0 3.0 1.8 104 chrX 10694158 intron X11Lbeta + chrX 10694210 intron X11Lbeta + chrX 10694262 intron X11Lbeta + chrX_7_10690001 chrX_10690001 RAL-707 1997 chrX 10772679 10772695 chrX 10772762 10772778 Tirant 4 82 3.0 1.0 2.0 1.3 99 chrX 10772679 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772778 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-707 1998 chrX 10803040 10803049 chrX 10803125 10803133 4 85 3.5 3.0 3.2 1.0 93 chrX 10803040 intron Imp - chrX 10803086 intron Imp - chrX 10803133 intron Imp - chrX_4_10800001 chrX_10800001 RAL-707 1999 chrX 11194449 11194462 chrX 11201870 11201883 gypsy5 5 7421 2.0 5.0 3.5 1.1 7434 chrX 11194449 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201883 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-707 2000 chrX 11214988 11215012 chrX 11215351 11215375 8 363 1.0 1.5 1.2 3.6 387 chrX 11214988 intergenic not near genes chrX 11215182 intergenic not near genes chrX 11215375 intergenic not near genes chrX_8_11215001 chrX_11215001 RAL-707 2001 chrX 11268560 11268593 chrX 11270053 11270086 hopper2 8 1492 2.0 3.5 2.8 2.1 1526 chrX 11268560 intron CG44422 - chrX 11269323 intron CG44422 - chrX 11270086 intron CG44422 - chrX_8_11265001 chrX_11265001 RAL-707 2002 chrX 11312070 11312092 chrX 11319419 11319443 Stalker2 4 7350 1.5 7.0 4.2 0.8 7373 chrX 11312070 intergenic not near genes chrX 11315756 intergenic not near genes chrX 11319443 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-707 2003 chrX 11327197 11327230 chrX 11327273 11327306 14 76 2.0 0.5 1.2 6.4 109 chrX 11327197 intron CG1657 + chrX 11327252 intron CG1657 + chrX 11327306 intron CG1657 + chrX_14_11325001 chrX_11325001 RAL-707 2004 chrX 11499109 11499139 chrX 11499187 11499213 5 77 2.0 3.5 2.8 1.3 104 chrX 11499109 intron Drak + chrX 11499161 intron Drak + chrX 11499213 intron Drak + chrX_5_11495001 chrX_11495001 RAL-707 2005 chrX 11633424 11633447 chrX 11640478 11640501 297 10 7054 2.0 4.0 3.0 2.5 7077 chrX 11633424 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_10_11635001 chrX_11635001 RAL-707 2006 chrX 11804679 11804689 chrX 11804782 11804793 5 104 2.5 1.5 2.0 1.7 114 chrX 11804679 intron Hsc70-3 - chrX 11804736 intron Hsc70-3 - chrX 11804793 intron Hsc70-3 - chrX_5_11800001 chrX_11800001 RAL-707 2007 chrX 11922364 11922380 chrX 11922497 11922513 6 133 2.5 2.5 2.5 1.7 149 chrX 11922364 exon Sclp - chrX 11922438 intron Sclp - chrX 11922513 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-707 2008 chrX 11936573 11936589 chrX 11936672 11936688 6 99 0.0 4.5 2.2 1.9 115 chrX 11936573 intron cac - chrX 11936630 intron cac - chrX 11936688 intron cac - chrX_6_11935001 chrX_11935001 RAL-707 2009 chrX 12014077 12014087 chrX 12014166 12014176 4 89 1.0 1.0 1.0 2.0 99 chrX 12014077 intron regucalcin + chrX 12014126 intron regucalcin + chrX 12014176 intron regucalcin + chrX_4_12010001 chrX_12010001 RAL-707 2010 chrX 12094036 12094067 chrX 12094128 12094158 6 92 1.0 1.0 1.0 3.0 122 chrX 12094036 intron,intron CR43960 +,Ten-a + chrX 12094097 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-707 2011 chrX 12168142 12168166 chrX 12173584 12173608 I-element 4 5442 1.5 2.5 2.0 1.3 5466 chrX 12168142 intron Ten-a + chrX 12170875 intron Ten-a + chrX 12173608 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-707 2012 chrX 12248756 12248772 chrX 12248848 12248864 5 92 0.5 2.5 1.5 2.0 108 chrX 12248756 intron Ten-a + chrX 12248810 intron Ten-a + chrX 12248864 intron Ten-a + chrX_5_12245001 chrX_12245001 RAL-707 2013 chrX 12272855 12272868 chrX 12272934 12272947 6 79 0.5 3.5 2.0 2.0 92 chrX 12272855 intron Ten-a + chrX 12272901 intron Ten-a + chrX 12272947 intron Ten-a + chrX_6_12270001 chrX_12270001 RAL-707 2014 chrX 12301954 12301981 chrX 12303260 12303287 X-element 5 1306 2.0 1.5 1.8 1.8 1333 chrX 12301954 intron Ten-a + chrX 12302620 intron Ten-a + chrX 12303287 intron Ten-a + chrX_5_12300001 chrX_12300001 RAL-707 2015 chrX 12303816 12303841 chrX 12303918 12303943 6 102 2.0 0.5 1.2 2.7 127 chrX 12303816 intron Ten-a + chrX 12303880 intron Ten-a + chrX 12303943 intron Ten-a + chrX_6_12300001 chrX_12300001 RAL-707 2016 chrX 12307427 12307462 chrX 12307516 12307551 8 89 1.0 1.5 1.2 3.6 124 chrX 12307427 intron Ten-a + chrX 12307489 intron Ten-a + chrX 12307551 intron Ten-a + chrX_8_12305001 chrX_12305001 RAL-707 2017 chrX 12350777 12350803 chrX 12350858 12350884 8 81 2.5 0.0 1.2 3.6 107 chrX 12350777 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350884 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-707 2018 chrX 12677224 12677239 chrX 12677313 12677328 4 89 0.0 2.5 1.2 1.8 104 chrX 12677224 intron Tis11 + chrX 12677276 intron Tis11 + chrX 12677328 intron Tis11 + chrX_4_12675001 chrX_12675001 RAL-707 2019 chrX 12752280 12752310 chrX 12752367 12752397 7 87 1.5 5.0 3.2 1.7 117 chrX 12752280 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752397 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-707 2020 chrX 12960765 12960799 chrX 12960846 12960880 5 81 2.5 0.0 1.2 2.3 115 chrX 12960765 3` UTR CG32642 + chrX 12960822 intergenic CG32642 + chrX 12960880 intergenic CG32642 + chrX_5_12960001 chrX_12960001 RAL-707 2021 chrX 13061351 13061366 chrX 13061462 13061477 4 111 1.0 1.0 1.0 2.0 126 chrX 13061351 intron rad + chrX 13061414 intron rad + chrX 13061477 intron rad + chrX_4_13060001 chrX_13060001 RAL-707 2022 chrX 13172358 13172380 chrX 13172434 13172456 7 76 3.0 2.5 2.8 1.8 98 chrX 13172358 exon CG34411 - chrX 13172407 intron CG34411 - chrX 13172456 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-707 2023 chrX 13278160 13278184 chrX 13278242 13278267 4 83 4.5 0.0 2.2 1.2 107 chrX 13278160 intron HDAC4 - chrX 13278214 intron HDAC4 - chrX 13278267 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-707 2024 chrX 13374839 13374865 chrX 13374919 13374945 8 80 1.5 1.5 1.5 3.2 106 chrX 13374839 intron CG1640 + chrX 13374892 intron CG1640 + chrX 13374945 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-707 2025 chrX 13429463 13429488 chrX 13430612 13430637 jockey 5 1149 2.0 0.5 1.2 2.3 1174 chrX 13429463 intergenic not near genes chrX 13430050 intergenic not near genes chrX 13430637 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-707 2026 chrX 13754438 13754465 chrX 13754528 13754557 7 91 2.0 2.5 2.2 2.2 119 chrX 13754438 intron Pdcd4 - chrX 13754498 intron Pdcd4 - chrX 13754557 intron Pdcd4 - chrX_7_13750001 chrX_13750001 RAL-707 2027 chrX 13843394 13843403 chrX 13843546 13843556 5 152 2.5 3.0 2.8 1.3 162 chrX 13843394 intron AMPdeam - chrX 13843475 intron AMPdeam - chrX 13843556 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-707 2028 chrX 13935515 13935527 chrX 13935598 13935610 6 83 3.0 5.0 4.0 1.2 95 chrX 13935515 intron mamo - chrX 13935562 intron mamo - chrX 13935610 intron mamo - chrX_6_13935001 chrX_13935001 RAL-707 2029 chrX 13943279 13943299 chrX 13943370 13943390 7 91 0.0 4.0 2.0 2.3 111 chrX 13943279 intron mamo - chrX 13943334 intron mamo - chrX 13943390 intron mamo - chrX_7_13940001 chrX_13940001 RAL-707 2030 chrX 13975874 13975907 chrX 13975951 13975984 8 77 0.0 1.5 0.8 4.4 110 chrX 13975874 intron mamo - chrX 13975929 intron mamo - chrX 13975984 intron mamo - chrX_8_13975001 chrX_13975001 RAL-707 2031 chrX 14068431 14068440 chrX 14068572 14068580 6 141 5.5 1.5 3.5 1.3 149 chrX 14068431 intergenic not near genes chrX 14068506 intergenic not near genes chrX 14068580 intergenic not near genes chrX_6_14065001 chrX_14065001 RAL-707 2032 chrX 14105039 14105055 chrX 14114190 14114204 roo 5 9150 1.5 3.0 2.2 1.6 9165 chrX 14105039 intergenic not near genes chrX 14109622 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-707 2033 chrX 14121147 14121163 chrX 14121379 14121395 4 232 4.0 2.0 3.0 1.0 248 chrX 14121147 intergenic not near genes chrX 14121271 intergenic not near genes chrX 14121395 intergenic not near genes chrX_4_14120001 chrX_14120001 RAL-707 2034 chrX 14124283 14124317 chrX 14124374 14124408 4 91 2.5 1.0 1.8 1.4 125 chrX 14124283 intergenic not near genes chrX 14124346 intergenic not near genes chrX 14124408 intergenic not near genes chrX_4_14120001 chrX_14120001 RAL-707 2035 chrX 14157593 14157607 chrX 14163250 14163264 297 6 5657 1.0 0.5 0.8 3.3 5671 chrX 14157593 intergenic not near genes chrX 14160428 intergenic not near genes chrX 14163264 intergenic not near genes chrX_6_14160001 chrX_14160001 RAL-707 2036 chrX 14209464 14209488 chrX 14209555 14209578 6 91 2.0 3.0 2.5 1.7 114 chrX 14209464 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209521 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209578 intron,intron l(1)G0007 +,l(1)G0469 - chrX_6_14205001 chrX_14205001 RAL-707 2037 chrX 14333310 14333317 chrX 14333391 14333397 4 81 1.0 2.0 1.5 1.6 87 chrX 14333310 intron dpr8 + chrX 14333354 intron dpr8 + chrX 14333397 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-707 2038 chrX 14371815 14371843 chrX 14371894 14371923 9 80 1.0 0.0 0.5 6.0 108 chrX 14371815 intron dpr8 + chrX 14371869 intron dpr8 + chrX 14371923 intron dpr8 + chrX_9_14370001 chrX_14370001 RAL-707 2039 chrX 14395105 14395129 chrX 14395204 14395227 8 99 1.0 0.0 0.5 5.3 122 chrX 14395105 intron dpr8 + chrX 14395166 intron dpr8 + chrX 14395227 intron dpr8 + chrX_8_14395001 chrX_14395001 RAL-707 2040 chrX 14411258 14411288 chrX 14411335 14411365 8 77 1.0 2.5 1.8 2.9 107 chrX 14411258 intron dpr8 + chrX 14411312 intron dpr8 + chrX 14411365 intron dpr8 + chrX_8_14410001 chrX_14410001 RAL-707 2041 chrX 14487819 14487852 chrX 14487914 14487947 9 95 0.5 2.0 1.2 4.1 128 chrX 14487819 intergenic not near genes chrX 14487883 intergenic not near genes chrX 14487947 intergenic not near genes chrX_9_14485001 chrX_14485001 RAL-707 2042 chrX 14597736 14597751 chrX 14597813 14597828 5 77 0.0 2.0 1.0 2.5 92 chrX 14597736 intron CG9413 - chrX 14597782 intron CG9413 - chrX 14597828 intron CG9413 - chrX_5_14595001 chrX_14595001 RAL-707 2043 chrX 14636465 14636483 chrX 14641906 14641924 I-element 7 5441 1.0 4.5 2.8 1.8 5459 chrX 14636465 intron NetA - chrX 14639194 intron NetA - chrX 14641924 intron NetA - chrX_7_14635001 chrX_14635001 RAL-707 2044 chrX 14767945 14767962 chrX 14768025 14768042 5 80 3.0 0.0 1.5 2.0 97 chrX 14767945 intergenic not near genes chrX 14767994 intergenic not near genes chrX 14768042 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-707 2045 chrX 14778035 14778058 chrX 14782832 14782854 Doc 6 4797 1.0 2.0 1.5 2.4 4819 chrX 14778035 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782854 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-707 2046 chrX 14818774 14818796 chrX 14823978 14824000 copia 5 5204 0.5 1.0 0.8 2.8 5226 chrX 14818774 intron rut - chrX 14821387 intron rut - chrX 14824000 intron rut - chrX_5_14820001 chrX_14820001 RAL-707 2047 chrX 14968083 14968099 chrX 14968162 14968178 10 79 1.5 4.0 2.8 2.6 95 chrX 14968083 intron eag + chrX 14968130 intron eag + chrX 14968178 intron eag + chrX_10_14965001 chrX_14965001 RAL-707 2048 chrX 15229315 15229337 chrX 15229392 15229414 7 77 3.5 0.5 2.0 2.3 99 chrX 15229315 exon CG9101 - chrX 15229364 intron CG9101 - chrX 15229414 intron CG9101 - chrX_7_15225001 chrX_15225001 RAL-707 2049 chrX 15273702 15273725 chrX 15274868 15274891 1360 5 1166 7.0 3.5 5.2 0.8 1189 chrX 15273702 intergenic not near genes chrX 15274296 intergenic not near genes chrX 15274891 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-707 2050 chrX 15367776 15367790 chrX 15367865 15367878 7 89 4.0 1.5 2.8 1.8 102 chrX 15367776 intron acj6 - chrX 15367827 intron acj6 - chrX 15367878 intron acj6 - chrX_7_15365001 chrX_15365001 RAL-707 2051 chrX 15413055 15413082 chrX 15417357 15417383 Juan 7 4302 4.5 3.0 3.8 1.5 4328 chrX 15413055 intron Cngl - chrX 15415219 intron Cngl - chrX 15417383 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-707 2052 chrX 15536700 15536707 chrX 15536776 15536780 5 76 8.0 5.0 6.5 0.7 80 chrX 15536700 intron Ac13E - chrX 15536740 intron Ac13E - chrX 15536780 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-707 2053 chrX 15565647 15565668 chrX 15565733 15565754 6 86 2.0 2.5 2.2 1.9 107 chrX 15565647 intergenic not near genes chrX 15565700 intergenic not near genes chrX 15565754 intergenic not near genes chrX_6_15565001 chrX_15565001 RAL-707 2054 chrX 15666212 15666228 chrX 15666289 15666305 6 77 3.5 3.0 3.2 1.4 93 chrX 15666212 intergenic not near genes chrX 15666258 intergenic not near genes chrX 15666305 intergenic not near genes chrX_6_15665001 chrX_15665001 RAL-707 2055 chrX 15678048 15678068 chrX 15678125 15678145 11 77 2.0 4.5 3.2 2.6 97 chrX 15678048 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_11_15675001 chrX_15675001 RAL-707 2056 chrX 15680488 15680503 chrX 15680576 15680591 4 88 0.5 0.0 0.2 3.3 103 chrX 15680488 intergenic not near genes chrX 15680540 intergenic not near genes chrX 15680591 intergenic not near genes chrX_4_15680001 chrX_15680001 RAL-707 2057 chrX 15681396 15681424 chrX 15681478 15681506 4 82 2.5 0.0 1.2 1.8 110 chrX 15681396 intergenic not near genes chrX 15681451 intergenic not near genes chrX 15681506 intergenic not near genes chrX_4_15680001 chrX_15680001 RAL-707 2058 chrX 16150006 16150034 chrX 16150100 16150128 6 94 0.0 0.0 0.0 6.0 122 chrX 16150006 intergenic not near genes chrX 16150067 intergenic not near genes chrX 16150128 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-707 2059 chrX 16295533 16295549 chrX 16295617 16295633 4 84 0.5 0.0 0.2 3.3 100 chrX 16295533 intron CG9911 - chrX 16295583 intron CG9911 - chrX 16295633 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-707 2060 chrX 16329438 16329448 chrX 16329521 16329531 4 82 0.0 6.5 3.2 1.0 93 chrX 16329438 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329531 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-707 2061 chrX 16650930 16650956 chrX 16651007 16651033 6 77 2.5 0.0 1.2 2.7 103 chrX 16650930 intergenic CG32573 +,CG42512 + chrX 16650982 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_6_16650001 chrX_16650001 RAL-707 2062 chrX 16689624 16689656 chrX 16689709 16689740 6 85 1.0 2.0 1.5 2.4 116 chrX 16689624 intron Sep4 - chrX 16689682 intron Sep4 - chrX 16689740 intron Sep4 - chrX_6_16685001 chrX_16685001 RAL-707 2063 chrX 16841406 16841424 chrX 16841484 16841502 7 78 0.5 0.5 0.5 4.7 96 chrX 16841406 exon RSG7 - chrX 16841454 intron RSG7 - chrX 16841502 intron RSG7 - chrX_7_16840001 chrX_16840001 RAL-707 2064 chrX 16951320 16951356 chrX 16951400 16951436 14 79 2.0 2.0 2.0 4.7 116 chrX 16951320 exon RhoGAP15B + chrX 16951378 exon RhoGAP15B + chrX 16951436 exon RhoGAP15B + chrX_14_16950001 chrX_16950001 RAL-707 2065 chrX 17011968 17011997 chrX 17012051 17012080 6 83 2.0 2.5 2.2 1.9 112 chrX 17011968 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012080 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-707 2066 chrX 17335695 17335728 chrX 17335787 17335820 7 91 3.0 1.5 2.2 2.2 125 chrX 17335695 intergenic not near genes chrX 17335758 intergenic not near genes chrX 17335820 intergenic not near genes chrX_7_17335001 chrX_17335001 RAL-707 2067 chrX 17493249 17493278 chrX 17493329 17493358 8 80 3.0 0.5 1.8 2.9 109 chrX 17493249 intron CG43658 - chrX 17493304 intron CG43658 - chrX 17493358 intron CG43658 - chrX_8_17490001 chrX_17490001 RAL-707 2068 chrX 17612622 17612633 chrX 17612700 17612711 7 78 1.5 0.5 1.0 3.5 89 chrX 17612622 intergenic not near genes chrX 17612666 intergenic not near genes chrX 17612711 intergenic not near genes chrX_7_17610001 chrX_17610001 RAL-707 2069 chrX 17792964 17792981 chrX 17796260 17796277 flea 7 3296 0.5 0.5 0.5 4.7 3313 chrX 17792964 intron OdsH + chrX 17794620 intron OdsH + chrX 17796277 intron OdsH + chrX_7_17790001 chrX_17790001 RAL-707 2070 chrX 17911868 17911879 chrX 17911956 17911967 4 88 0.0 2.0 1.0 2.0 99 chrX 17911868 intron CG6847 + chrX 17911918 intron CG6847 + chrX 17911967 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-707 2071 chrX 18230531 18230542 chrX 18235220 18235229 5 4688 14.0 13.5 13.8 0.3 4698 chrX 18230531 intergenic not near genes chrX 18232880 intergenic not near genes chrX 18235229 intergenic not near genes chrX_5_18230001 chrX_18230001 RAL-707 2072 chrX 18270048 18270068 chrX 18270136 18270156 9 88 2.5 1.0 1.8 3.2 108 chrX 18270048 intergenic not near genes chrX 18270102 intergenic not near genes chrX 18270156 intergenic not near genes chrX_9_18270001 chrX_18270001 RAL-707 2073 chrX 18355278 18355283 chrX 18355395 18355400 5 117 2.5 2.0 2.2 1.6 122 chrX 18355278 intron CG6123 - chrX 18355339 intron CG6123 - chrX 18355400 intron CG6123 - chrX_5_18355001 chrX_18355001 RAL-707 2074 chrX 18427380 18427401 chrX 18427791 18427812 6 411 1.5 1.5 1.5 2.4 432 chrX 18427380 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427812 intergenic not near genes chrX_6_18425001 chrX_18425001 RAL-707 2075 chrX 18429497 18429525 chrX 18434807 18434836 Transpac 8 5311 0.5 1.0 0.8 4.4 5339 chrX 18429497 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434836 intergenic not near genes chrX_8_18430001 chrX_18430001 RAL-707 2076 chrX 18453607 18453615 chrX 18453683 18453691 4 76 5.0 4.0 4.5 0.7 84 chrX 18453607 intron CG32547 - chrX 18453649 intron CG32547 - chrX 18453691 intron CG32547 - chrX_4_18450001 chrX_18450001 RAL-707 2077 chrX 18512015 18512038 chrX 18512104 18512127 6 88 2.0 2.5 2.2 1.9 112 chrX 18512015 intron Ggt-1 - chrX 18512071 5` UTR Ggt-1 - chrX 18512127 5` UTR Ggt-1 - chrX_6_18510001 chrX_18510001 RAL-707 2078 chrX 18558776 18558802 chrX 18558858 18558884 8 81 0.0 3.5 1.8 2.9 108 chrX 18558776 intron Bx + chrX 18558830 intron Bx + chrX 18558884 intron Bx + chrX_8_18555001 chrX_18555001 RAL-707 2079 chrX 18645013 18645049 chrX 18645111 18645147 7 98 1.0 3.0 2.0 2.3 134 chrX 18645013 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645147 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-707 2080 chrX 18749622 18749648 chrX 18749706 18749732 8 84 2.5 3.5 3.0 2.0 110 chrX 18749622 intergenic not near genes chrX 18749677 intergenic not near genes chrX 18749732 intergenic not near genes chrX_8_18745001 chrX_18745001 RAL-707 2081 chrX 18896519 18896546 chrX 18896630 18896657 7 111 1.5 0.0 0.8 3.9 138 chrX 18896519 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896657 intergenic CG7349 + chrX_7_18895001 chrX_18895001 RAL-707 2082 chrX 18944516 18944547 chrX 18944601 18944632 9 84 0.5 1.0 0.8 5.0 116 chrX 18944516 intron CG43759 + chrX 18944574 intron CG43759 + chrX 18944632 intron CG43759 + chrX_9_18940001 chrX_18940001 RAL-707 2083 chrX 18947504 18947535 chrX 18947597 18947628 7 93 1.0 2.5 1.8 2.5 124 chrX 18947504 intron CG43759 + chrX 18947566 intron CG43759 + chrX 18947628 intron CG43759 + chrX_7_18945001 chrX_18945001 RAL-707 2084 chrX 19048220 19048250 chrX 19048310 19048340 7 90 1.0 1.5 1.2 3.2 120 chrX 19048220 intergenic not near genes chrX 19048280 intergenic not near genes chrX 19048340 intergenic not near genes chrX_7_19045001 chrX_19045001 RAL-707 2085 chrX 19060412 19060436 chrX 19065196 19065220 Doc 4 4784 0.5 1.5 1.0 2.0 4808 chrX 19060412 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065220 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-707 2086 chrX 19084106 19084119 chrX 19084226 19084239 4 120 0.0 0.0 0.0 4.0 133 chrX 19084106 intergenic CR45503 + chrX 19084172 intergenic CR45503 + chrX 19084239 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-707 2087 chrX 19098758 19098783 chrX 19098836 19098861 5 78 1.0 1.0 1.0 2.5 103 chrX 19098758 intergenic not near genes chrX 19098810 intergenic not near genes chrX 19098861 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-707 2088 chrX 19136553 19136582 chrX 19143473 19143501 412 4 6920 2.0 0.5 1.2 1.8 6948 chrX 19136553 intergenic not near genes chrX 19140027 intergenic not near genes chrX 19143501 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-707 2089 chrX 19187516 19187531 chrX 19187598 19187613 4 81 3.0 0.0 1.5 1.6 97 chrX 19187516 intergenic CG33253 + chrX 19187564 intergenic CG33253 +,Mec2 + chrX 19187613 intergenic CG33253 +,Mec2 + chrX_4_19185001 chrX_19185001 RAL-707 2090 chrX 19191430 19191461 chrX 19191667 19191698 8 237 2.0 1.5 1.8 2.9 268 chrX 19191430 intergenic HP1D3csd + chrX 19191564 intergenic not near genes chrX 19191698 intergenic not near genes chrX_8_19190001 chrX_19190001 RAL-707 2091 chrX 13057298 13057300 chrX 19242812 19242814 14 6185514 8.0 8.5 8.2 1.5 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_14_16150001 chrX_16150001 RAL-707 2092 chrX 19320232 19320253 chrX 19320320 19320340 8 88 3.5 3.0 3.2 1.9 108 chrX 19320232 intron out - chrX 19320286 intron out - chrX 19320340 intron out - chrX_8_19320001 chrX_19320001 RAL-707 2093 chrX 19330472 19330484 chrX 19330592 19330604 4 120 1.0 2.5 1.8 1.4 132 chrX 19330472 intron nAChRalpha7 - chrX 19330538 intron nAChRalpha7 - chrX 19330604 intron nAChRalpha7 - chrX_4_19330001 chrX_19330001 RAL-707 2094 chrX 19356995 19357009 chrX 19358436 19358450 NOF 5 1441 2.0 0.0 1.0 2.5 1455 chrX 19356995 intron kek5 + chrX 19357722 intron kek5 + chrX 19358450 intron kek5 + chrX_5_19355001 chrX_19355001 RAL-707 2095 chrX 19472137 19472156 chrX 19472707 19472726 jockey 4 570 1.0 4.0 2.5 1.1 589 chrX 19472137 intergenic kek5 + chrX 19472432 intergenic not near genes chrX 19472726 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-707 2096 chrX 19710071 19710098 chrX 19711857 19711881 S-element 9 1785 2.0 2.0 2.0 3.0 1810 chrX 19710071 intron meso18E - chrX 19710976 intron meso18E - chrX 19711881 intron meso18E - chrX_9_19710001 chrX_19710001 RAL-707 2097 chrX 19838507 19838521 chrX 19838585 19838599 5 77 4.5 3.0 3.8 1.0 92 chrX 19838507 intron pico - chrX 19838553 intron pico - chrX 19838599 intron pico - chrX_5_19835001 chrX_19835001 RAL-707 2098 chrX 19881455 19881483 chrX 19881536 19881564 5 81 2.0 4.0 3.0 1.2 109 chrX 19881455 intron Hers + chrX 19881510 intron Hers + chrX 19881564 intron Hers + chrX_5_19880001 chrX_19880001 RAL-707 2099 chrX 19884104 19884119 chrX 19884180 19884195 5 75 0.5 2.5 1.5 2.0 91 chrX 19884104 intron Hers + chrX 19884150 intron Hers + chrX 19884195 intron Hers + chrX_5_19880001 chrX_19880001 RAL-707 2100 chrX 19992419 19992437 chrX 19992495 19992513 9 76 3.0 8.0 5.5 1.4 94 chrX 19992419 intergenic not near genes chrX 19992466 intergenic not near genes chrX 19992513 intergenic not near genes chrX_9_19990001 chrX_19990001 RAL-707 2101 chrX 20041532 20041564 chrX 20041612 20041644 7 80 2.0 1.5 1.8 2.5 112 chrX 20041532 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041644 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-707 2102 chrX 20105195 20105229 chrX 20105298 20105332 9 103 25.0 23.0 24.0 0.4 137 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_9_20105001 chrX_20105001 RAL-707 2103 chrX 20312883 20312909 chrX 20312961 20312987 5 78 2.0 1.5 1.8 1.8 104 chrX 20312883 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20312987 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-707 2104 chrX 20377330 20377348 chrX 20378797 20378814 hobo 4 1467 3.5 3.5 3.5 0.9 1484 chrX 20377330 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378814 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-707 2105 chrX 20384966 20384982 chrX 20385451 20385467 6 485 0.0 2.5 1.2 2.7 501 chrX 20384966 intergenic not near genes chrX 20385216 intergenic not near genes chrX 20385467 intergenic not near genes chrX_6_20385001 chrX_20385001 RAL-707 2106 chrX 20426182 20426213 chrX 20428377 20428407 15 2195 34.0 29.5 31.8 0.5 2225 chrX 20426182 exon cactin + chrX 20427294 intergenic CG11710 -,CG15456 - chrX 20428407 exon CG11710 - chrX_15_20425001 chrX_20425001 RAL-707 2107 chrX 20456661 20456687 chrX 20456763 20456789 4 102 0.5 3.5 2.0 1.3 128 chrX 20456661 intron CG32506 + chrX 20456725 intron CG32506 + chrX 20456789 intron CG32506 + chrX_4_20455001 chrX_20455001 RAL-707 2108 chrX 20464116 20464144 chrX 20467685 20467713 7 3569 12.0 16.0 14.0 0.5 3597 chrX 20464116 exon CG32506 + chrX 20465914 3` UTR CG32506 + chrX 20467713 5` UTR GstT3 + chrX_7_20465001 chrX_20465001 RAL-707 2109 chrX 20468013 20468042 chrX 20468102 20468131 8 89 0.0 0.0 0.0 8.0 118 chrX 20468013 intron GstT3 + chrX 20468072 intron GstT3 + chrX 20468131 intron GstT3 + chrX_8_20465001 chrX_20465001 RAL-707 2110 chrX 20504132 20504153 chrX 20505653 20505672 transib2 7 1520 2.5 2.5 2.5 2.0 1540 chrX 20504132 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505672 intron RhoGAP19D - chrX_7_20500001 chrX_20500001 RAL-707 2111 chrX 20814197 20814228 chrX 20814290 20814322 5 94 1.5 2.0 1.8 1.8 125 chrX 20814197 intron shakB - chrX 20814260 intron shakB - chrX 20814322 intron shakB - chrX_5_20810001 chrX_20810001 RAL-707 2112 chrX 20822724 20822742 chrX 20823078 20823096 6 354 2.0 2.5 2.2 1.9 372 chrX 20822724 intron,intron shakB -,CG15450 + chrX 20822910 intron,intron shakB -,CG15450 + chrX 20823096 intron,intron shakB -,CG15450 + chrX_6_20820001 chrX_20820001 RAL-707 2113 chrX 20897943 20897952 chrX 20898033 20898042 5 90 3.0 0.0 1.5 2.0 99 chrX 20897943 intron shakB - chrX 20897992 intron shakB - chrX 20898042 intron shakB - chrX_5_20895001 chrX_20895001 RAL-707 2114 chrX 20915048 20915068 chrX 20915219 20915237 7 170 2.0 2.0 2.0 2.3 189 chrX 20915048 intron shakB - chrX 20915142 intron shakB - chrX 20915237 intron shakB - chrX_7_20915001 chrX_20915001 RAL-707 2115 chrX 20940736 20940756 chrX 20942203 20942225 hobo 6 1468 3.5 3.5 3.5 1.3 1489 chrX 20940736 intergenic not near genes chrX 20941480 intergenic not near genes chrX 20942225 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-707 2116 chrX 21078776 21078781 chrX 21078854 21078859 4 78 0.5 2.5 1.5 1.6 83 chrX 21078776 intron bves + chrX 21078818 intron bves + chrX 21078859 intron bves + chrX_4_21075001 chrX_21075001 RAL-707 2117 chrX 21086137 21086159 chrX 21087166 21087188 jockey 5 1029 3.0 2.5 2.8 1.3 1051 chrX 21086137 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087188 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-707 2118 chrX 21185725 21185752 chrX 21186792 21186819 6 1067 7.5 11.5 9.5 0.6 1094 chrX 21185725 intergenic not near genes chrX 21186272 intergenic not near genes chrX 21186819 intergenic not near genes chrX_6_21185001 chrX_21185001 RAL-707 2119 chrX 21253285 21253306 chrX 21253361 21253383 11 77 4.0 3.0 3.5 2.4 98 chrX 21253285 intron CG32521 - chrX 21253334 intron CG32521 - chrX 21253383 intron CG32521 - chrX_11_21250001 chrX_21250001 RAL-707 2120 chrX 21334349 21334370 chrX 21334454 21334475 7 105 1.5 0.5 1.0 3.5 126 chrX 21334349 intron tty - chrX 21334412 intron tty - chrX 21334475 intron tty - chrX_7_21330001 chrX_21330001 RAL-707 2121 chrX 21430012 21430017 chrX 21430090 21430095 4 78 3.0 3.5 3.2 1.0 83 chrX 21430012 intron CG42343 - chrX 21430054 intron CG42343 - chrX 21430095 intron CG42343 - chrX_4_21430001 chrX_21430001 RAL-707 2122 chrX 21458691 21458729 chrX 21464127 21464165 Ivk 7 5436 0.0 2.0 1.0 3.5 5474 chrX 21458691 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464165 intergenic not near genes chrX_7_21460001 chrX_21460001 RAL-707 2123 chrX 21495251 21495273 chrX 21495332 21495356 6 82 1.5 2.5 2.0 2.0 105 chrX 21495251 intergenic not near genes chrX 21495304 intergenic not near genes chrX 21495356 intergenic not near genes chrX_6_21495001 chrX_21495001 RAL-707 2124 chrX 21500562 21500586 chrX 21500763 21500787 6 201 0.0 2.0 1.0 3.0 225 chrX 21500562 intron CR45082 - chrX 21500674 intron CR45082 - chrX 21500787 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-707 2125 chrX 21516970 21516985 chrX 21517067 21517082 7 97 4.0 3.0 3.5 1.6 112 chrX 21516970 intron CR45082 - chrX 21517026 intron CR45082 - chrX 21517082 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-707 2126 chrX 21565412 21565438 chrX 21565490 21565516 4 78 1.0 2.0 1.5 1.6 104 chrX 21565412 intergenic not near genes chrX 21565464 intergenic not near genes chrX 21565516 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-707 2127 chrX 21567956 21567963 chrX 21568037 21568044 4 81 6.0 0.0 3.0 1.0 88 chrX 21567956 intergenic not near genes chrX 21568000 intergenic not near genes chrX 21568044 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-707 2128 chrX 22478871 22478895 chrX 22479004 22479028 8 133 0.0 3.0 1.5 3.2 157 chrX 22478871 intron CG12576 - chrX 22478950 intron CG12576 - chrX 22479028 intron CG12576 - chrX_8_22475001 chrX_22475001 RAL-707 2129 chrX 22521487 22521504 chrX 22521783 22521800 6 296 2.5 1.5 2.0 2.0 313 chrX 22521487 intron CG17600 + chrX 22521644 intron CG17600 + chrX 22521800 intron CG17600 + chrX_6_22520001 chrX_22520001 RAL-707 2130 chrX 22564571 22564578 chrX 22575145 22575150 jockey 4 10573 12.5 5.0 8.8 0.4 10579 chrX 22564571 intergenic not near genes chrX 22569860 intergenic not near genes chrX 22575150 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-707 2131 chrX 22661977 22662005 chrX 22662076 22662104 8 99 0.0 1.0 0.5 5.3 127 chrX 22661977 intron CR44997 + chrX 22662040 intron CR44997 + chrX 22662104 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-707 2132 chrX 22690489 22690505 chrX 22690584 22690600 5 95 1.0 4.0 2.5 1.4 111 chrX 22690489 intron CR44997 + chrX 22690544 intron CR44997 + chrX 22690600 intron CR44997 + chrX_5_22690001 chrX_22690001 RAL-707 2133 chrX 22697500 22697513 chrX 22701797 22701810 Juan 5 4297 3.0 4.0 3.5 1.1 4310 chrX 22697500 intron CR44997 + chrX 22699655 intron CR44997 + chrX 22701810 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-707 2134 chrX 22771508 22771533 chrX 22774798 22774824 297 6 3291 2.5 1.0 1.8 2.1 3316 chrX 22771508 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774824 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-707 2135 chrX 22820962 22820985 chrX 22821150 22821173 7 188 0.5 0.5 0.5 4.7 211 chrX 22820962 intergenic not near genes chrX 22821068 intergenic not near genes chrX 22821173 intergenic not near genes chrX_7_22820001 chrX_22820001 RAL-707 2136 chrX 22987104 22987134 chrX 22989763 22989793 Burdock 5 2659 1.0 1.0 1.0 2.5 2689 chrX 22987104 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989793 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-707 2137 chrX 22996309 22996338 chrX 23003543 23003572 roo 7 7234 2.5 2.5 2.5 2.0 7263 chrX 22996309 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-707 2138 chrY 975608 975819 chrY 975718 975899 7 100 156.5 120.5 138.5 0.1 291 chrY 975608 intergenic not near genes chrY 975754 intergenic not near genes chrY 975899 intergenic not near genes chrY_7_975001 chrY_975001 RAL-707 2139 chrY 1431368 1431373 chrY 1447404 1447409 Doc 4 16036 1.5 2.5 2.0 1.3 16041 chrY 1431368 intergenic not near genes chrY 1439388 intergenic not near genes chrY 1447409 intergenic not near genes chrY_4_1435001 chrY_1435001 RAL-707 2140 chrY 3666431 3666453 chrY 3666584 3666606 5 153 0.0 0.0 0.0 5.0 175 chrY 3666431 intergenic not near genes chrY 3666518 intergenic not near genes chrY 3666606 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-707