SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47450	47484	chr2L	52574	52582	jockey	11	5120	2.5	4.5	3.5	2.4	5132	chr2L	47450	intron	Cda5 -	chr2L	50016	intron	Cda5 -	chr2L	52582	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-703
5	chr2L	347878	347903	chr2L	355394	355423	blood	6	7519	1.5	3.5	2.5	1.7	7545	chr2L	347878	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355423	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-703
11	chr2L	770474	770487	chr2L	772250	772283	Bari1	4	1794	4.0	5.5	4.8	0.7	1809	chr2L	770474	intergenic	not near genes	chr2L	771378	intergenic	not near genes	chr2L	772283	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-703
23	chr2L	976859	976885	chr2L	984515	984530	roo	6	7654	5.0	0.5	2.8	1.6	7671	chr2L	976859	intergenic	not near genes	chr2L	980694	intergenic	not near genes	chr2L	984530	intergenic	not near genes	chr2L_6_980001	chr2L_980001	RAL-703
24	chr2L	996707	996748	chr2L	1005822	1005863	roo	4	9115	0.0	5.0	2.5	1.1	9156	chr2L	996707	intergenic	not near genes	chr2L	1001285	intergenic	not near genes	chr2L	1005863	intergenic	not near genes	chr2L_4_1000001	chr2L_1000001	RAL-703
29	chr2L	1220117	1220160	chr2L	1227593	1227646	blood	10	7476	2.5	2.5	2.5	2.9	7529	chr2L	1220117	intron	CG42329 +	chr2L	1223882	intron	CG42329 +	chr2L	1227646	intron	CG42329 +	chr2L_10_1220001	chr2L_1220001	RAL-703
32	chr2L	1301761	1301775	chr2L	1302320	1302334	gypsy	5	559	3.5	2.5	3.0	1.2	573	chr2L	1301761	intergenic	not near genes	chr2L	1302048	intergenic	not near genes	chr2L	1302334	intergenic	not near genes	chr2L_5_1300001	chr2L_1300001	RAL-703
37	chr2L	1570685	1570713	chr2L	1573561	1573605	F-element	8	2889	2.5	3.5	3.0	2.0	2920	chr2L	1570685	intron	haf +	chr2L	1572145	intron	haf +	chr2L	1573605	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-703
39	chr2L	1678963	1679002	chr2L	1686447	1686487	blood	7	7481	3.5	3.0	3.2	1.7	7524	chr2L	1678963	intron	chinmo +	chr2L	1682725	intron	chinmo +	chr2L	1686487	intron	chinmo +	chr2L_7_1680001	chr2L_1680001	RAL-703
41	chr2L	1711345	1711372	chr2L	1711678	1711713	mdg3	8	340	5.0	3.0	4.0	1.6	368	chr2L	1711345	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711529	3` UTR	frtz -	chr2L	1711713	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-703
44	chr2L	2100379	2100408	chr2L	2109545	2109553	roo	6	9156	3.0	3.0	3.0	1.5	9174	chr2L	2100379	intron	dpr3 -	chr2L	2104966	intron	dpr3 -	chr2L	2109553	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-703
45	chr2L	2294040	2294066	chr2L	2299247	2299281	copia	4	5212	2.5	3.0	2.8	1.1	5241	chr2L	2294040	intergenic	not near genes	chr2L	2296660	intergenic	not near genes	chr2L	2299281	intergenic	not near genes	chr2L_4_2295001	chr2L_2295001	RAL-703
50	chr2L	2565538	2565560	chr2L	2571631	2571653	297	6	6090	1.5	7.0	4.2	1.2	6115	chr2L	2565538	exon	Cyp309a2 -	chr2L	2568596	intron	Cyp309a2 -	chr2L	2571653	exon	Cyp309a2 -	chr2L_6_2565001	chr2L_2565001	RAL-703
52	chr2L	2661210	2661228	chr2L	2663043	2663085	I-element	7	1845	2.0	5.5	3.8	1.5	1875	chr2L	2661210	intergenic	not near genes	chr2L	2662148	intergenic	not near genes	chr2L	2663085	intergenic	not near genes	chr2L_7_2660001	chr2L_2660001	RAL-703
55	chr2L	2772601	2772627	chr2L	2779203	2779231	297	5	6603	2.0	4.0	3.0	1.2	6630	chr2L	2772601	3` UTR	Syt1 -	chr2L	2775916	intron	Syt1 -	chr2L	2779231	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-703
57	chr2L	2933306	2933331	chr2L	2935488	2935511	pogo	10	2189	3.0	2.5	2.8	2.6	2205	chr2L	2933306	intron	lilli +	chr2L	2934408	intron	lilli +	chr2L	2935511	intron	lilli +	chr2L_10_2930001	chr2L_2930001	RAL-703
60	chr2L	3072998	3073026	chr2L	3078238	3078268	copia	9	5241	2.5	4.0	3.2	2.1	5270	chr2L	3072998	intron	toc -	chr2L	3075633	intron	toc -	chr2L	3078268	intron	toc -	chr2L_9_3075001	chr2L_3075001	RAL-703
64	chr2L	3202720	3202771	chr2L	3210169	3210220	mdg1	7	7447	0.0	2.5	1.2	3.2	7500	chr2L	3202720	intergenic	not near genes	chr2L	3206470	intergenic	not near genes	chr2L	3210220	intergenic	CR45336 +	chr2L_7_3205001	chr2L_3205001	RAL-703
65	chr2L	3251480	3251523	chr2L	3259059	3259106	springer	5	7579	0.5	3.5	2.0	1.7	7626	chr2L	3251480	intergenic	not near genes	chr2L	3255293	intergenic	not near genes	chr2L	3259106	intergenic	not near genes	chr2L_5_3255001	chr2L_3255001	RAL-703
67	chr2L	3388578	3388612	chr2L	3388839	3388872	pogo	8	257	4.5	2.0	3.2	1.9	294	chr2L	3388578	intergenic	CG42460 -	chr2L	3388725	intergenic	CG42460 -	chr2L	3388872	intergenic	CG42460 -,CR44791 +	chr2L_8_3385001	chr2L_3385001	RAL-703
73	chr2L	3649772	3649805	chr2L	3654994	3655027	copia	6	5222	2.5	0.5	1.5	2.4	5255	chr2L	3649772	intron	for -	chr2L	3652400	intron	for -	chr2L	3655027	intron	for -	chr2L_6_3650001	chr2L_3650001	RAL-703
82	chr2L	4066033	4066058	chr2L	4068867	4068885	Juan	8	2835	2.5	4.0	3.2	1.9	2852	chr2L	4066033	intron	ed +	chr2L	4067459	intron	ed +	chr2L	4068885	intron	ed +	chr2L_8_4065001	chr2L_4065001	RAL-703
84	chr2L	4181296	4181302	chr2L	4183911	4183941	Burdock	4	2640	5.0	3.5	4.2	0.8	2645	chr2L	4181296	intergenic	not near genes	chr2L	4182618	intergenic	not near genes	chr2L	4183941	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-703
90	chr2L	4601695	4601721	chr2L	4609155	4609182	mdg1	7	7458	3.0	3.0	3.0	1.8	7487	chr2L	4601695	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609182	intron	dp -	chr2L_7_4605001	chr2L_4605001	RAL-703
91	chr2L	4661844	4661855	chr2L	4669429	4669454	opus	5	7597	2.5	2.5	2.5	1.4	7610	chr2L	4661844	intergenic	not near genes	chr2L	4665649	intergenic	not near genes	chr2L	4669454	intergenic	not near genes	chr2L_5_4665001	chr2L_4665001	RAL-703
96	chr2L	4953495	4953534	chr2L	4953756	4953795	pogo	10	258	2.5	1.0	1.8	3.6	300	chr2L	4953495	intergenic	Jon25Bii -	chr2L	4953645	intergenic	not near genes	chr2L	4953795	intergenic	Jon25Bi -	chr2L_10_4950001	chr2L_4950001	RAL-703
101	chr2L	5342751	5342793	chr2L	5345151	5345191	Doc	8	2397	2.5	2.0	2.2	2.5	2440	chr2L	5342751	intergenic	not near genes	chr2L	5343971	intergenic	not near genes	chr2L	5345191	intergenic	not near genes	chr2L_8_5340001	chr2L_5340001	RAL-703
108	chr2L	5827712	5827740	chr2L	5836726	5836751	roo	4	9020	2.5	8.0	5.2	0.6	9039	chr2L	5827712	intron	TrissinR +	chr2L	5832232	intron	TrissinR +	chr2L	5836751	intron	TrissinR +	chr2L_4_5830001	chr2L_5830001	RAL-703
117	chr2L	6426853	6426887	chr2L	6445120	6445150	roo	7	18275	3.5	6.5	5.0	1.2	18297	chr2L	6426853	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445150	exon	CG9527 -	chr2L_7_6435001	chr2L_6435001	RAL-703
124	chr2L	6876771	6876806	chr2L	6882965	6882993	diver	4	6194	5.0	1.5	3.2	1.0	6222	chr2L	6876771	intron	Nlg2 +	chr2L	6879882	intron	Nlg2 +	chr2L	6882993	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-703
129	chr2L	7343317	7343343	chr2L	7350439	7350457	roo	7	7129	4.5	1.0	2.8	1.8	7140	chr2L	7343317	intron	Wnt6 +	chr2L	7346887	intron	Wnt6 +	chr2L	7350457	intron	Wnt6 +	chr2L_7_7345001	chr2L_7345001	RAL-703
139	chr2L	7977078	7977110	chr2L	7984069	7984098	297	8	6988	3.0	5.0	4.0	1.6	7020	chr2L	7977078	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984098	intron,5` UTR	Snoo -,CG7231 +	chr2L_8_7980001	chr2L_7980001	RAL-703
141	chr2L	8018824	8018838	chr2L	8023627	8023642	Doc	4	4804	0.0	4.5	2.2	1.2	4818	chr2L	8018824	intron	Tg +	chr2L	8021233	intron	Tg +	chr2L	8023642	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-703
150	chr2L	8594458	8594491	chr2L	8601518	8601565	297	6	7069	4.5	4.0	4.2	1.2	7107	chr2L	8594458	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598012	intron	Sema-1a +	chr2L	8601565	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-703
151	chr2L	8723101	8723144	chr2L	8731497	8731538	Tirant	5	8392	0.5	1.0	0.8	2.8	8437	chr2L	8723101	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731538	intron	raw -	chr2L_5_8725001	chr2L_8725001	RAL-703
155	chr2L	9000264	9000310	chr2L	9007793	9007819	roo	6	7521	2.0	2.5	2.2	1.9	7555	chr2L	9000264	intergenic	Try29F +	chr2L	9004042	intergenic	not near genes	chr2L	9007819	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-703
160	chr2L	9217952	9217994	chr2L	9222759	9222800	Doc	4	4806	4.0	3.0	3.5	0.9	4848	chr2L	9217952	intron	tai +	chr2L	9220376	intron	tai +	chr2L	9222800	intron	tai +	chr2L_4_9220001	chr2L_9220001	RAL-703
169	chr2L	9393480	9393516	chr2L	9396467	9396501	jockey	7	2983	5.0	6.0	5.5	1.1	3021	chr2L	9393480	intron	Shawl -	chr2L	9394990	intron	Shawl -	chr2L	9396501	intron	Shawl -	chr2L_7_9390001	chr2L_9390001	RAL-703
170	chr2L	9393517	9393529	chr2L	9396463	9396516	jockey	6	2971	3.5	5.5	4.5	1.1	2999	chr2L	9393517	intron	Shawl -	chr2L	9395016	intron	Shawl -	chr2L	9396516	intron	Shawl -	chr2L_6_9395001	chr2L_9395001	RAL-703
179	chr2L	9973724	9973756	chr2L	9980846	9980894	HMS-Beagle	7	7134	4.5	3.5	4.0	1.4	7170	chr2L	9973724	intergenic	not near genes	chr2L	9977309	intergenic	not near genes	chr2L	9980894	intergenic	not near genes	chr2L_7_9975001	chr2L_9975001	RAL-703
184	chr2L	10156306	10156319	chr2L	10163796	10163809	blood	5	7488	7.5	4.0	5.8	0.7	7503	chr2L	10156306	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160058	intron	CG44153 -	chr2L	10163809	intron	CG44153 -	chr2L_5_10160001	chr2L_10160001	RAL-703
185	chr2L	10156321	10156340	chr2L	10163793	10163817	blood	5	7483	5.0	4.0	4.5	0.9	7496	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160069	intron	CG44153 -	chr2L	10163817	intron	CG44153 -	chr2L_5_10160001	chr2L_10160001	RAL-703
194	chr2L	10592829	10592873	chr2L	10600511	10600542	opus	5	7678	0.5	3.0	1.8	1.8	7713	chr2L	10592829	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600542	intron	Trim9 +	chr2L_5_10595001	chr2L_10595001	RAL-703
202	chr2L	10862837	10862874	chr2L	10864454	10864504	Rt1c	11	1625	3.5	2.0	2.8	2.9	1667	chr2L	10862837	3` UTR	CR43807 -	chr2L	10863670	intron	CR43807 -	chr2L	10864504	3` UTR	CR43807 -	chr2L_11_10860001	chr2L_10860001	RAL-703
203	chr2L	10946947	10946964	chr2L	10956166	10956179	roo	7	9229	2.5	2.0	2.2	2.2	9232	chr2L	10946947	intron	dpr2 -	chr2L	10951563	intron	dpr2 -	chr2L	10956179	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-703
215	chr2L	11563620	11563664	chr2L	11568841	11568888	copia	6	5222	2.5	0.5	1.5	2.4	5268	chr2L	11563620	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568888	intergenic	not near genes	chr2L_6_11565001	chr2L_11565001	RAL-703
217	chr2L	11614061	11614085	chr2L	11615574	11615587	hopper2	4	1508	2.0	2.5	2.2	1.2	1526	chr2L	11614061	intron	kek2 +	chr2L	11614824	intron	kek2 +	chr2L	11615587	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	RAL-703
219	chr2L	11713502	11713532	chr2L	11720990	11721006	blood	7	7483	3.0	6.5	4.8	1.2	7504	chr2L	11713502	intergenic	not near genes	chr2L	11717254	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-703
222	chr2L	12067309	12067361	chr2L	12074381	12074397	297	5	7065	1.0	2.5	1.8	1.8	7088	chr2L	12067309	intergenic	not near genes	chr2L	12070853	intergenic	not near genes	chr2L	12074397	intergenic	not near genes	chr2L_5_12070001	chr2L_12070001	RAL-703
235	chr2L	12558315	12558353	chr2L	12565464	12565485	HMS-Beagle	7	7146	3.0	5.5	4.2	1.3	7170	chr2L	12558315	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565485	intergenic	not near genes	chr2L_7_12560001	chr2L_12560001	RAL-703
239	chr2L	12728907	12728947	chr2L	12729167	12729207	pogo	11	258	5.0	5.5	5.2	1.8	300	chr2L	12728907	intron	MRP +	chr2L	12729057	intron	MRP +	chr2L	12729207	exon	MRP +	chr2L_11_12725001	chr2L_12725001	RAL-703
240	chr2L	12731042	12731084	chr2L	12735829	12735869	F-element	9	4784	1.5	1.5	1.5	3.6	4827	chr2L	12731042	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735869	intron	MRP +	chr2L_9_12730001	chr2L_12730001	RAL-703
241	chr2L	12739159	12739201	chr2L	12743960	12743993	Doc	13	4797	3.0	2.0	2.5	3.7	4834	chr2L	12739159	exon	MRP +	chr2L	12741576	intron	MRP +	chr2L	12743993	exon	MRP +	chr2L_13_12740001	chr2L_12740001	RAL-703
243	chr2L	12781791	12781811	chr2L	12789254	12789273	Quasimodo	7	7463	6.5	2.5	4.5	1.3	7482	chr2L	12781791	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789273	intergenic	not near genes	chr2L_7_12785001	chr2L_12785001	RAL-703
245	chr2L	12861678	12861686	chr2L	12863163	12863173	hobo	4	1486	7.5	4.5	6.0	0.6	1495	chr2L	12861678	intergenic	not near genes	chr2L	12862426	intergenic	not near genes	chr2L	12863173	intergenic	not near genes	chr2L_4_12860001	chr2L_12860001	RAL-703
246	chr2L	12861689	12861725	chr2L	12863160	12863175	hobo	12	1477	3.0	4.0	3.5	2.7	1486	chr2L	12861689	intergenic	not near genes	chr2L	12862432	intergenic	not near genes	chr2L	12863175	intergenic	not near genes	chr2L_12_12860001	chr2L_12860001	RAL-703
247	chr2L	12894009	12894052	chr2L	12895485	12895514	hobo	10	1478	3.0	1.5	2.2	3.1	1505	chr2L	12894009	intergenic	not near genes	chr2L	12894762	intergenic	not near genes	chr2L	12895514	intergenic	not near genes	chr2L_10_12890001	chr2L_12890001	RAL-703
249	chr2L	12933834	12933874	chr2L	12941316	12941361	blood	14	7484	2.5	2.5	2.5	4.0	7527	chr2L	12933834	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941361	intergenic	not near genes	chr2L_14_12935001	chr2L_12935001	RAL-703
251	chr2L	13036231	13036257	chr2L	13036493	13036519	X-element	6	262	3.5	0.0	1.8	2.1	288	chr2L	13036231	intron	CG9932 -	chr2L	13036375	intron	CG9932 -	chr2L	13036519	intron	CG9932 -	chr2L_6_13035001	chr2L_13035001	RAL-703
253	chr2L	13405630	13405680	chr2L	13410447	13410497	Doc	9	4815	1.5	3.5	2.5	2.6	4867	chr2L	13405630	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410497	intron	CG7110 +	chr2L_9_13405001	chr2L_13405001	RAL-703
254	chr2L	13449459	13449485	chr2L	13456915	13456929	Quasimodo	7	7454	4.5	5.5	5.0	1.2	7470	chr2L	13449459	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453194	intron	CG42784 +	chr2L	13456929	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	RAL-703
255	chr2L	13481430	13481462	chr2L	13482056	13482088	jockey	7	621	6.5	3.0	4.8	1.2	658	chr2L	13481430	intron	CG42784 +	chr2L	13481759	intron	CG42784 +	chr2L	13482088	intron	CG42784 +	chr2L_7_13480001	chr2L_13480001	RAL-703
256	chr2L	13522122	13522164	chr2L	13527660	13527684	Transpac	8	5533	0.5	2.5	1.5	3.2	5562	chr2L	13522122	intron	B4 -	chr2L	13524903	intron	B4 -	chr2L	13527684	intron	B4 -	chr2L_8_13520001	chr2L_13520001	RAL-703
264	chr2L	13761799	13761835	chr2L	13762915	13762951	Doc	7	1126	2.0	2.0	2.0	2.3	1152	chr2L	13761799	intron	TM9SF4 +	chr2L	13762375	intron	TM9SF4 +	chr2L	13762951	intron	TM9SF4 +	chr2L_7_13760001	chr2L_13760001	RAL-703
283	chr2L	14803877	14803906	chr2L	14809087	14809129	copia	5	5219	1.5	2.5	2.0	1.7	5252	chr2L	14803877	intergenic	not near genes	chr2L	14806503	intergenic	not near genes	chr2L	14809129	intergenic	not near genes	chr2L_5_14805001	chr2L_14805001	RAL-703
293	chr2L	14984367	14984398	chr2L	14991988	14992020	opus	5	7618	4.5	4.5	4.5	0.9	7653	chr2L	14984367	intron	mol -	chr2L	14988194	intron	mol -	chr2L	14992020	intron	mol -	chr2L_5_14985001	chr2L_14985001	RAL-703
304	chr2L	15446030	15446076	chr2L	15453519	15453565	blood	10	7486	2.5	1.0	1.8	3.6	7535	chr2L	15446030	intergenic	not near genes	chr2L	15449798	intergenic	not near genes	chr2L	15453565	intergenic	not near genes	chr2L_10_15445001	chr2L_15445001	RAL-703
306	chr2L	15586393	15586423	chr2L	15593465	15593483	297	6	7070	3.5	2.5	3.0	1.5	7090	chr2L	15586393	intergenic	not near genes	chr2L	15589938	intergenic	not near genes	chr2L	15593483	intergenic	not near genes	chr2L_6_15585001	chr2L_15585001	RAL-703
312	chr2L	15956005	15956021	chr2L	15957492	15957500	hobo	7	1485	5.5	2.5	4.0	1.4	1495	chr2L	15956005	intron	beat-Ib -	chr2L	15956752	intron	beat-Ib -	chr2L	15957500	intron	beat-Ib -	chr2L_7_15955001	chr2L_15955001	RAL-703
313	chr2L	15956026	15956059	chr2L	15957488	15957530	hobo	8	1481	1.0	1.5	1.2	3.6	1504	chr2L	15956026	intron	beat-Ib -	chr2L	15956778	intron	beat-Ib -	chr2L	15957530	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-703
317	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	15	145889	16.5	17.0	16.8	0.8	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_15_16140001	chr2L_16140001	RAL-703
319	chr2L	16141151	16141193	chr2L	16146378	16146419	copia	10	5226	2.5	4.0	3.2	2.4	5268	chr2L	16141151	intergenic	not near genes	chr2L	16143785	intergenic	not near genes	chr2L	16146419	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-703
320	chr2L	16153729	16153737	chr2L	16160811	16160824	297	4	7086	3.5	4.5	4.0	0.8	7095	chr2L	16153729	intergenic	not near genes	chr2L	16157276	intergenic	not near genes	chr2L	16160824	intergenic	not near genes	chr2L_4_16155001	chr2L_16155001	RAL-703
322	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	16.5	17.0	16.8	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-703
323	chr2L	16280236	16280285	chr2L	16281427	16281476	1360	16	1188	1.5	5.0	3.2	3.8	1240	chr2L	16280236	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281476	intron	crp -	chr2L_16_16280001	chr2L_16280001	RAL-703
329	chr2L	16511963	16511992	chr2L	16519097	16519126	HMS-Beagle	4	7134	3.0	1.0	2.0	1.3	7163	chr2L	16511963	intron	CG5953 -	chr2L	16515544	intron	CG5953 -	chr2L	16519126	intron	CG5953 -	chr2L_4_16515001	chr2L_16515001	RAL-703
343	chr2L	16958092	16958105	chr2L	16962899	16962913	Doc	4	4804	4.0	2.0	3.0	1.0	4821	chr2L	16958092	intergenic	not near genes	chr2L	16960502	intergenic	not near genes	chr2L	16962913	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	RAL-703
344	chr2L	16958107	16958127	chr2L	16962898	16962911	Doc	5	4800	2.5	2.0	2.2	1.6	4804	chr2L	16958107	intergenic	not near genes	chr2L	16960509	intergenic	not near genes	chr2L	16962911	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-703
362	chr2L	17687500	17687522	chr2L	17692265	17692285	F-element	5	4764	2.5	1.0	1.8	1.8	4785	chr2L	17687500	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692285	intron	CadN -	chr2L_5_17685001	chr2L_17685001	RAL-703
363	chr2L	17727853	17727878	chr2L	17729340	17729344	hobo	5	1483	3.0	4.0	3.5	1.1	1491	chr2L	17727853	intron	CadN -	chr2L	17728598	intron	CadN -	chr2L	17729344	intron	CadN -	chr2L_5_17725001	chr2L_17725001	RAL-703
365	chr2L	17819912	17819937	chr2L	17825123	17825154	copia	6	5216	2.5	2.5	2.5	1.7	5242	chr2L	17819912	intron	CadN2 -	chr2L	17822533	intron	CadN2 -	chr2L	17825154	intron	CadN2 -	chr2L_6_17820001	chr2L_17820001	RAL-703
367	chr2L	17911945	17911989	chr2L	17914143	17914167	pogo	7	2192	1.0	3.5	2.2	2.2	2222	chr2L	17911945	intergenic	not near genes	chr2L	17913056	intergenic	not near genes	chr2L	17914167	intergenic	CG43271 -	chr2L_7_17910001	chr2L_17910001	RAL-703
369	chr2L	17951926	17951978	chr2L	17953412	17953459	hobo	7	1482	2.5	5.0	3.8	1.5	1533	chr2L	17951926	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953459	intergenic	not near genes	chr2L_7_17950001	chr2L_17950001	RAL-703
371	chr2L	18051863	18051896	chr2L	18061030	18061063	roo	6	9165	2.5	4.0	3.2	1.4	9200	chr2L	18051863	intron	rdo +	chr2L	18056463	intron	rdo +	chr2L	18061063	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-703
393	chr2L	19147357	19147403	chr2L	19154412	19154458	297	5	7047	6.0	6.0	6.0	0.7	7101	chr2L	19147357	intron	brat +	chr2L	19150908	intron	brat +	chr2L	19154458	intron	brat +	chr2L_5_19150001	chr2L_19150001	RAL-703
400	chr2L	19345012	19345046	chr2L	19357227	19357274	blood	4	12223	3.5	3.5	3.5	0.9	12262	chr2L	19345012	intron	dnt -	chr2L	19351143	intron	dnt -	chr2L	19357274	intron	dnt -	chr2L_4_19350001	chr2L_19350001	RAL-703
409	chr2L	19620079	19620125	chr2L	19621087	19621127	jockey	14	1007	3.0	5.0	4.0	2.8	1048	chr2L	19620079	intron	Lar +	chr2L	19620603	intron	Lar +	chr2L	19621127	intron	Lar +	chr2L_14_19620001	chr2L_19620001	RAL-703
410	chr2L	19652554	19652569	chr2L	19674007	19674008	opus	4	21450	6.0	4.0	5.0	0.7	21454	chr2L	19652554	intron	Lar +	chr2L	19663281	intron	Lar +	chr2L	19674008	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-703
413	chr2L	19703517	19703563	chr2L	19712673	19712717	roo	13	9149	2.5	2.5	2.5	3.7	9200	chr2L	19703517	intron	Lar +	chr2L	19708117	intron	Lar +	chr2L	19712717	intron	Lar +	chr2L_13_19705001	chr2L_19705001	RAL-703
415	chr2L	19737346	19737386	chr2L	19740832	19740874	1360	8	3482	2.5	2.0	2.2	2.5	3528	chr2L	19737346	intergenic	Nf-YB +	chr2L	19739110	intergenic	not near genes	chr2L	19740874	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	RAL-703
416	chr2L	19762793	19762827	chr2L	19763054	19763089	pogo	11	259	2.0	1.5	1.8	3.9	296	chr2L	19762793	5` UTR	fbp -	chr2L	19762941	intron	fbp -	chr2L	19763089	intron	fbp -	chr2L_11_19760001	chr2L_19760001	RAL-703
422	chr2L	20005860	20005903	chr2L	20010946	20010989	flea	9	5092	2.5	3.0	2.8	2.4	5129	chr2L	20005860	intron	CG43861 -	chr2L	20008424	intron	CG43861 -	chr2L	20010989	intron	CG43861 -	chr2L_9_20005001	chr2L_20005001	RAL-703
425	chr2L	20272096	20272142	chr2L	20282827	20282858	copia	13	10729	6.0	1.5	3.8	2.7	10762	chr2L	20272096	intergenic	not near genes	chr2L	20277477	intergenic	not near genes	chr2L	20282858	intergenic	not near genes	chr2L_13_20275001	chr2L_20275001	RAL-703
428	chr2L	20372209	20372255	chr2L	20372479	20372514	pogo	5	268	0.0	5.5	2.8	1.3	305	chr2L	20372209	intergenic	Ugt37a1 -	chr2L	20372362	intergenic	Ugt37a1 -	chr2L	20372514	exon	Ugt37a1 -	chr2L_5_20370001	chr2L_20370001	RAL-703
432	chr2L	20568661	20568681	chr2L	20569062	20569091	X-element	5	407	2.5	3.5	3.0	1.2	430	chr2L	20568661	intron	CR45347 +	chr2L	20568876	intron	CR45347 +	chr2L	20569091	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	RAL-703
433	chr2L	20576201	20576245	chr2L	20583688	20583733	blood	7	7487	2.5	0.5	1.5	2.8	7532	chr2L	20576201	intergenic	CR45347 +	chr2L	20579967	intergenic	not near genes	chr2L	20583733	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-703
443	chr2L	20976640	20976668	chr2L	20981458	20981483	X-element	5	4827	4.0	1.0	2.5	1.4	4843	chr2L	20976640	intron	CG42238 -	chr2L	20979062	intron	CG42238 -	chr2L	20981483	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-703
447	chr2L	21020256	21020309	chr2L	21023953	21023983	NOF	12	3688	3.5	2.0	2.8	3.2	3727	chr2L	21020256	intron	CG42238 -	chr2L	21022120	intron	CG42238 -	chr2L	21023983	intron	CG42238 -	chr2L_12_21020001	chr2L_21020001	RAL-703
448	chr2L	21041119	21041167	chr2L	21049400	21049421	Tirant	12	8275	2.0	1.5	1.8	4.3	8302	chr2L	21041119	intron	CG42238 -	chr2L	21045270	intron	CG42238 -	chr2L	21049421	intron	CG42238 -	chr2L_12_21045001	chr2L_21045001	RAL-703
460	chr2L	21691808	21691835	chr2L	21698295	21698325	Burdock	5	6483	4.5	0.5	2.5	1.4	6517	chr2L	21691808	intron	CG31619 +	chr2L	21695066	intron	CG31619 +	chr2L	21698325	intron	CG31619 +	chr2L_5_21695001	chr2L_21695001	RAL-703
465	chr2L	21981664	21981701	chr2L	21990849	21990881	roo	8	9184	3.0	2.5	2.8	2.1	9217	chr2L	21981664	exon	CG2528 -	chr2L	21986272	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-703
468	chr2L	22581971	22582002	chr2L	22583758	22583807	S-element	7	1803	1.0	3.0	2.0	2.3	1836	chr2L	22581971	intron	CG17494 +	chr2L	22582889	intron	CG17494 +	chr2L	22583807	intron	CG17494 +	chr2L_7_22580001	chr2L_22580001	RAL-703
470	chr2L	23006505	23006522	chr2L	23007182	23007217	Osvaldo	5	690	3.0	2.5	2.8	1.3	712	chr2L	23006505	intron	Cht3 -	chr2L	23006861	intron	Cht3 -	chr2L	23007217	intron	Cht3 -	chr2L_5_23005001	chr2L_23005001	RAL-703
472	chr2R	529332	529347	chr2R	537976	537991	Max-element	4	8644	3.0	5.0	4.0	0.8	8659	chr2R	529332	intron	CG40378 +	chr2R	533662	intron	CG40378 +	chr2R	537991	intron	CG40378 +	chr2R_4_530001	chr2R_530001	RAL-703
473	chr2R	552756	552767	chr2R	553973	553983	1360	4	1222	2.5	1.0	1.8	1.4	1227	chr2R	552756	intron	CG40378 +	chr2R	553370	intron	CG40378 +	chr2R	553983	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-703
474	chr2R	1082374	1082382	chr2R	1087132	1087178	Doc	4	4777	3.5	3.5	3.5	0.9	4804	chr2R	1082374	intron	rl +	chr2R	1084776	intron	rl +	chr2R	1087178	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-703
475	chr2R	1516586	1516596	chr2R	1521334	1521344	1731	7	4748	9.5	3.5	6.5	0.9	4758	chr2R	1516586	exon	Maf1 -	chr2R	1518965	intron	Maf1 -	chr2R	1521344	5` UTR	Maf1 -	chr2R_7_1515001	chr2R_1515001	RAL-703
477	chr2R	2498970	2499011	chr2R	2508135	2508161	roo	7	9163	1.5	3.0	2.2	2.2	9191	chr2R	2498970	intron	MFS17 -	chr2R	2503566	intron	MFS17 -	chr2R	2508161	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RAL-703
479	chr2R	3144067	3144105	chr2R	3393365	3393403	Doc	5	249298	9.5	13.5	11.5	0.4	249336	chr2R	3144067	intron	CG42596 +	chr2R	3268735	intergenic	not near genes	chr2R	3393403	intergenic	not near genes	chr2R_5_3265001	chr2R_3265001	RAL-703
480	chr2R	3532608	3532633	chr2R	3536071	3536096	Doc	6	3461	0.0	1.5	0.8	3.3	3488	chr2R	3532608	intergenic	not near genes	chr2R	3534352	intergenic	not near genes	chr2R	3536096	intergenic	not near genes	chr2R_6_3530001	chr2R_3530001	RAL-703
483	chr2R	4622944	4622979	chr2R	4624114	4624158	1360	8	1174	4.5	2.0	3.2	1.9	1214	chr2R	4622944	intergenic	CR44101 -	chr2R	4623551	intergenic	not near genes	chr2R	4624158	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	RAL-703
499	chr2R	5869254	5869298	chr2R	5874350	5874394	flea	8	5094	3.0	1.5	2.2	2.5	5140	chr2R	5869254	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874394	intergenic	not near genes	chr2R_8_5870001	chr2R_5870001	RAL-703
502	chr2R	6096700	6096751	chr2R	6101913	6101934	BS	8	5205	2.0	4.5	3.2	1.9	5234	chr2R	6096700	intron	EcR -	chr2R	6099317	intron	EcR -	chr2R	6101934	intron	EcR -	chr2R_8_6095001	chr2R_6095001	RAL-703
507	chr2R	6494519	6494544	chr2R	6499301	6499326	F-element	6	4779	3.0	1.5	2.2	1.9	4807	chr2R	6494519	intergenic	not near genes	chr2R	6496922	intergenic	not near genes	chr2R	6499326	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-703
511	chr2R	6579770	6579800	chr2R	6584875	6584906	flea	4	5106	2.0	2.0	2.0	1.3	5136	chr2R	6579770	intron	jing +	chr2R	6582338	intron	jing +	chr2R	6584906	intron	jing +	chr2R_4_6580001	chr2R_6580001	RAL-703
519	chr2R	7196552	7196595	chr2R	7201347	7201390	F-element	15	4794	3.5	3.0	3.2	3.6	4838	chr2R	7196552	intron	pk +	chr2R	7198971	intron	pk +	chr2R	7201390	intron	pk +	chr2R_15_7195001	chr2R_7195001	RAL-703
523	chr2R	7608392	7608432	chr2R	7613614	7613653	I-element	15	5220	2.5	5.0	3.8	3.1	5261	chr2R	7608392	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613653	intron	CG1358 -	chr2R_15_7610001	chr2R_7610001	RAL-703
526	chr2R	7815653	7815701	chr2R	7822142	7822162	Burdock	10	6482	2.5	2.5	2.5	2.9	6509	chr2R	7815653	intergenic	CG1882 +	chr2R	7818908	intergenic	not near genes	chr2R	7822162	3` UTR	cathD -	chr2R_10_7815001	chr2R_7815001	RAL-703
528	chr2R	7869177	7869209	chr2R	7873983	7873998	Doc	5	4802	3.5	2.0	2.8	1.3	4821	chr2R	7869177	intron	Dgk -	chr2R	7871588	intron	Dgk -	chr2R	7873998	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-703
530	chr2R	8160918	8160941	chr2R	8161025	8161050	1360	6	107	2.0	6.5	4.2	1.2	132	chr2R	8160918	exon	CG8708 -	chr2R	8160984	intron	CG8708 -	chr2R	8161050	intron	CG8708 -	chr2R_6_8160001	chr2R_8160001	RAL-703
532	chr2R	8330849	8330885	chr2R	8331355	8331391	roo	11	503	3.5	2.5	3.0	2.8	542	chr2R	8330849	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331391	intron	pdm3 +	chr2R_11_8330001	chr2R_8330001	RAL-703
533	chr2R	8398215	8398244	chr2R	8402995	8403029	Doc	5	4788	2.0	3.5	2.8	1.3	4814	chr2R	8398215	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403029	intron	CG2121 -	chr2R_5_8400001	chr2R_8400001	RAL-703
539	chr2R	8566012	8566058	chr2R	8566984	8567025	1360	9	971	4.5	5.5	5.0	1.5	1013	chr2R	8566012	5` UTR	Cyp6a14 -	chr2R	8566518	5` UTR	Cyp6a14 -	chr2R	8567025	5` UTR	Cyp6a14 -	chr2R_9_8565001	chr2R_8565001	RAL-703
543	chr2R	8722748	8722789	chr2R	8723009	8723039	pogo	8	258	3.5	1.0	2.2	2.5	291	chr2R	8722748	intron	CG14767 -	chr2R	8722894	intron	CG14767 -	chr2R	8723039	intron	CG14767 -	chr2R_8_8720001	chr2R_8720001	RAL-703
545	chr2R	8777903	8777944	chr2R	8784127	8784160	diver	4	6222	1.5	3.0	2.2	1.2	6257	chr2R	8777903	intergenic	not near genes	chr2R	8781032	intergenic	not near genes	chr2R	8784160	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-703
548	chr2R	9151285	9151331	chr2R	9157775	9157820	Burdock	8	6485	2.0	3.0	2.5	2.3	6535	chr2R	9151285	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157820	intergenic	CG8008 -	chr2R_8_9150001	chr2R_9150001	RAL-703
549	chr2R	9212674	9212718	chr2R	9213179	9213224	roo	14	502	3.0	5.0	4.0	2.8	550	chr2R	9212674	intergenic	CR45309 +	chr2R	9212949	intergenic	CR45309 +	chr2R	9213224	5` UTR	CR45309 +	chr2R_14_9210001	chr2R_9210001	RAL-703
555	chr2R	9871055	9871065	chr2R	9871548	9871564	roo	5	501	0.0	7.0	3.5	1.1	509	chr2R	9871055	intron	cbx -	chr2R	9871310	intron	cbx -	chr2R	9871564	intron,5` UTR	cbx -,CG18446 +	chr2R_5_9870001	chr2R_9870001	RAL-703
558	chr2R	9945431	9945466	chr2R	9945647	9945682	BS	6	215	1.5	3.5	2.5	1.7	251	chr2R	9945431	intron	Mef2 -	chr2R	9945556	intron	Mef2 -	chr2R	9945682	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-703
561	chr2R	10005833	10005879	chr2R	10007012	10007044	1360	10	1178	2.0	2.0	2.0	3.3	1211	chr2R	10005833	intron	Pka-R2 -	chr2R	10006438	intron	Pka-R2 -	chr2R	10007044	intron	Pka-R2 -	chr2R_10_10005001	chr2R_10005001	RAL-703
581	chr2R	11009799	11009843	chr2R	11018991	11019013	roo	6	9179	3.0	2.5	2.8	1.6	9214	chr2R	11009799	intron	luna -	chr2R	11014406	intron	luna -	chr2R	11019013	intron	luna -	chr2R_6_11010001	chr2R_11010001	RAL-703
582	chr2R	11019883	11019904	chr2R	11024949	11024990	jockey	4	5072	2.5	4.0	3.2	1.0	5107	chr2R	11019883	intron	luna -	chr2R	11022436	intron	luna -	chr2R	11024990	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-703
588	chr2R	11297623	11297646	chr2R	11301964	11301987	flea	4	4341	3.5	1.0	2.2	1.2	4364	chr2R	11297623	intergenic	CG42336 -	chr2R	11299805	intergenic	not near genes	chr2R	11301987	5` UTR	CG7741 +	chr2R_4_11295001	chr2R_11295001	RAL-703
589	chr2R	11415523	11415547	chr2R	11418665	11418714	opus	7	3160	2.0	2.0	2.0	2.3	3191	chr2R	11415523	intron	Drip -	chr2R	11417118	intron	Drip -	chr2R	11418714	intron	Drip -	chr2R_7_11415001	chr2R_11415001	RAL-703
590	chr2R	11472639	11472680	chr2R	11473844	11473895	pogo	6	1213	4.5	4.0	4.2	1.2	1256	chr2R	11472639	intergenic	not near genes	chr2R	11473267	intergenic	not near genes	chr2R	11473895	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-703
612	chr2R	12501688	12501704	chr2R	12503852	12503867	Rt1c	4	2172	4.5	2.5	3.5	0.9	2179	chr2R	12501688	intron	fdl -	chr2R	12502778	intron	fdl -	chr2R	12503867	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-703
617	chr2R	12707511	12707542	chr2R	12715896	12715905	roo	6	8381	0.5	3.0	1.8	2.1	8394	chr2R	12707511	intron	CG42663 +	chr2R	12711708	intron	CG42663 +	chr2R	12715905	intron	CG42663 +	chr2R_6_12710001	chr2R_12710001	RAL-703
620	chr2R	12789285	12789326	chr2R	12797656	12797685	roo	6	8372	2.5	2.5	2.5	1.7	8400	chr2R	12789285	intron,3` UTR	sca +,CR45137 -	chr2R	12793485	intron,intron	sca +,CR45137 -	chr2R	12797685	intron,3` UTR	sca +,CR45137 -	chr2R_6_12790001	chr2R_12790001	RAL-703
624	chr2R	13136820	13136861	chr2R	13141638	13141678	Doc	14	4814	3.5	2.0	2.8	3.7	4858	chr2R	13136820	exon	Cap-G +	chr2R	13139249	intron	Cap-G +	chr2R	13141678	intron	Cap-G +	chr2R_14_13135001	chr2R_13135001	RAL-703
638	chr2R	13580506	13580525	chr2R	13580854	13580869	jockey	8	362	1.5	5.0	3.2	1.9	363	chr2R	13580506	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580869	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_8_13580001	chr2R_13580001	RAL-703
640	chr2R	13728137	13728155	chr2R	13735792	13735832	opus	5	7673	2.5	3.0	2.8	1.3	7695	chr2R	13728137	intron	fas +	chr2R	13731984	intron	fas +	chr2R	13735832	intron	fas +	chr2R_5_13730001	chr2R_13730001	RAL-703
647	chr2R	14467303	14467318	chr2R	14476464	14476495	roo	5	9169	4.0	2.5	3.2	1.2	9192	chr2R	14467303	intergenic	not near genes	chr2R	14471899	intergenic	not near genes	chr2R	14476495	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	RAL-703
648	chr2R	14497378	14497415	chr2R	14498564	14498601	1360	7	1185	3.0	2.0	2.5	2.0	1223	chr2R	14497378	3` UTR	Cpsf160 -	chr2R	14497990	intron	Cpsf160 -	chr2R	14498601	3` UTR	Cpsf160 -	chr2R_7_14495001	chr2R_14495001	RAL-703
664	chr2R	15015440	15015479	chr2R	15022882	15022923	mdg1	6	7443	0.5	2.0	1.2	2.7	7483	chr2R	15015440	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022923	intron	hbs +	chr2R_6_15015001	chr2R_15015001	RAL-703
667	chr2R	15084962	15085001	chr2R	15092031	15092068	297	9	7066	4.5	2.5	3.5	2.0	7106	chr2R	15084962	intergenic	not near genes	chr2R	15088515	intergenic	not near genes	chr2R	15092068	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	RAL-703
668	chr2R	15119298	15119348	chr2R	15127799	15127844	Tirant	8	8497	5.5	2.5	4.0	1.6	8546	chr2R	15119298	intron	chn +	chr2R	15123571	intron	chn +	chr2R	15127844	intron	chn +	chr2R_8_15120001	chr2R_15120001	RAL-703
684	chr2R	16539642	16539668	chr2R	16544871	16544896	copia	5	5228	1.5	3.5	2.5	1.4	5254	chr2R	16539642	intergenic	not near genes	chr2R	16542269	intergenic	not near genes	chr2R	16544896	intergenic	not near genes	chr2R_5_16540001	chr2R_16540001	RAL-703
692	chr2R	17147225	17147264	chr2R	17152274	17152315	jockey	10	5050	6.5	3.5	5.0	1.7	5090	chr2R	17147225	intergenic	not near genes	chr2R	17149770	intergenic	not near genes	chr2R	17152315	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	RAL-703
693	chr2R	17236490	17236536	chr2R	17241712	17241745	copia	7	5214	2.0	4.5	3.2	1.7	5255	chr2R	17236490	intron	mbl +	chr2R	17239118	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_7_17235001	chr2R_17235001	RAL-703
697	chr2R	17485900	17485949	chr2R	17490690	17490736	F-element	10	4785	1.5	2.0	1.8	3.6	4836	chr2R	17485900	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488318	intron	NT5E-2 +	chr2R	17490736	intron	NT5E-2 +	chr2R_10_17485001	chr2R_17485001	RAL-703
702	chr2R	17782346	17782376	chr2R	17783569	17783599	pogo	5	1223	2.5	1.5	2.0	1.7	1253	chr2R	17782346	intergenic	CG33981 -,fab1 -	chr2R	17782972	intergenic	not near genes	chr2R	17783599	intergenic	mir-31a -	chr2R_5_17780001	chr2R_17780001	RAL-703
704	chr2R	18045654	18045701	chr2R	18046026	18046057	jockey	9	369	3.0	1.5	2.2	2.8	403	chr2R	18045654	intergenic	not near genes	chr2R	18045856	intergenic	not near genes	chr2R	18046057	intergenic	CG5767 -	chr2R_9_18045001	chr2R_18045001	RAL-703
705	chr2R	18111690	18111714	chr2R	18115550	18115602	F-element	5	3882	2.5	1.0	1.8	1.8	3912	chr2R	18111690	intergenic	not near genes	chr2R	18113646	intergenic	not near genes	chr2R	18115602	intergenic	not near genes	chr2R_5_18110001	chr2R_18110001	RAL-703
709	chr2R	18358373	18358414	chr2R	18372605	18372646	roo	13	14230	5.0	6.5	5.8	1.9	14273	chr2R	18358373	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372646	intergenic	not near genes	chr2R_13_18365001	chr2R_18365001	RAL-703
714	chr2R	18575814	18575831	chr2R	18581984	18582035	3S18	13	6193	2.0	2.5	2.2	4.1	6221	chr2R	18575814	intron	GEFmeso -	chr2R	18578924	intron	GEFmeso -	chr2R	18582035	intron	GEFmeso -	chr2R_13_18575001	chr2R_18575001	RAL-703
715	chr2R	18590850	18590892	chr2R	18600020	18600064	roo	8	9172	4.0	4.5	4.2	1.5	9214	chr2R	18590850	intron	GEFmeso -	chr2R	18595457	intron	GEFmeso -	chr2R	18600064	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-703
736	chr2R	19776576	19776618	chr2R	19779917	19779927	jockey	5	3335	3.5	4.0	3.8	1.0	3351	chr2R	19776576	intergenic	not near genes	chr2R	19778252	intergenic	not near genes	chr2R	19779927	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-703
739	chr2R	19957430	19957455	chr2R	19962640	19962675	copia	6	5213	3.0	3.0	3.0	1.5	5245	chr2R	19957430	intergenic	CG44623 +	chr2R	19960052	intergenic	not near genes	chr2R	19962675	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-703
742	chr2R	20069226	20069269	chr2R	20071875	20071914	opus	9	2649	2.0	3.0	2.5	2.6	2688	chr2R	20069226	intergenic	not near genes	chr2R	20070570	intergenic	not near genes	chr2R	20071914	intergenic	not near genes	chr2R_9_20070001	chr2R_20070001	RAL-703
743	chr2R	20087983	20088028	chr2R	20088111	20088156	1360	8	123	2.5	3.0	2.8	2.1	173	chr2R	20087983	intergenic	not near genes	chr2R	20088070	intergenic	not near genes	chr2R	20088156	intergenic	not near genes	chr2R_8_20085001	chr2R_20085001	RAL-703
751	chr2R	20739429	20739466	chr2R	20744215	20744253	F-element	4	4787	1.5	3.5	2.5	1.1	4824	chr2R	20739429	intron	dpr +	chr2R	20741841	intron	dpr +	chr2R	20744253	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-703
752	chr2R	20783293	20783330	chr2R	20788085	20788117	F-element	6	4789	2.0	5.0	3.5	1.3	4824	chr2R	20783293	intergenic	not near genes	chr2R	20785705	intergenic	not near genes	chr2R	20788117	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-703
768	chr2R	21738272	21738310	chr2R	21747440	21747446	roo	5	9165	1.5	5.5	3.5	1.1	9174	chr2R	21738272	intergenic	not near genes	chr2R	21742859	intergenic	not near genes	chr2R	21747446	intergenic	not near genes	chr2R_5_21740001	chr2R_21740001	RAL-703
769	chr2R	21753066	21753117	chr2R	21753571	21753594	roo	7	498	1.0	1.5	1.2	3.2	528	chr2R	21753066	intergenic	not near genes	chr2R	21753330	intergenic	not near genes	chr2R	21753594	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-703
780	chr2R	22349677	22349717	chr2R	22351477	22351512	jockey	5	1799	2.5	5.0	3.8	1.0	1835	chr2R	22349677	intron	Liprin-gamma -	chr2R	22350594	intron	Liprin-gamma -	chr2R	22351512	intron	Liprin-gamma -	chr2R_5_22350001	chr2R_22350001	RAL-703
781	chr2R	22360364	22360394	chr2R	22360816	22360830	jockey	6	448	2.5	2.5	2.5	1.7	466	chr2R	22360364	intron	Liprin-gamma -	chr2R	22360597	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-703
785	chr2R	22525752	22525777	chr2R	22529307	22529352	jockey	6	3572	3.5	1.5	2.5	1.7	3600	chr2R	22525752	intron	px -	chr2R	22527552	intron	px -	chr2R	22529352	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-703
788	chr2R	22774946	22774991	chr2R	22775380	22775430	jockey	6	436	2.0	2.0	2.0	2.0	484	chr2R	22774946	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775430	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-703
797	chr2R	23402598	23402639	chr2R	23407694	23407704	flea	9	5091	2.0	5.0	3.5	2.0	5106	chr2R	23402598	intergenic	CG3520 -	chr2R	23405151	intergenic	not near genes	chr2R	23407704	intergenic	not near genes	chr2R_9_23405001	chr2R_23405001	RAL-703
801	chr2R	23914293	23914331	chr2R	23921930	23921965	412	6	7632	2.5	5.0	3.8	1.2	7672	chr2R	23914293	exon	kcc +	chr2R	23918129	intron	kcc +	chr2R	23921965	exon	kcc +	chr2R_6_23915001	chr2R_23915001	RAL-703
805	chr2R	24177215	24177243	chr2R	24184720	24184730	412	10	7502	7.5	1.5	4.5	1.8	7515	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180972	intron	Nop60B +	chr2R	24184730	3` UTR	Nop60B +	chr2R_10_24180001	chr2R_24180001	RAL-703
807	chr2R	24353418	24353443	chr2R	24361800	24361823	roo	5	8382	5.0	6.0	5.5	0.8	8405	chr2R	24353418	intron,intron	bs +,CR44811 -	chr2R	24357620	intron,intron	bs +,CR44811 -	chr2R	24361823	intron,intron	bs +,CR44811 -	chr2R_5_24355001	chr2R_24355001	RAL-703
811	chr2R	24647571	24647588	chr2R	24655148	24655159	412	4	7571	7.0	4.5	5.8	0.6	7588	chr2R	24647571	intergenic	not near genes	chr2R	24651365	intergenic	not near genes	chr2R	24655159	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	RAL-703
814	chr2R	24727883	24727913	chr2R	24735402	24735429	mdg1	7	7516	0.0	3.0	1.5	2.8	7546	chr2R	24727883	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735429	intron	Mid1 -	chr2R_7_24730001	chr2R_24730001	RAL-703
815	chr2R	24763594	24763643	chr2R	24765588	24765622	G2	15	1989	2.5	4.0	3.2	3.6	2028	chr2R	24763594	exon	CG3894 +	chr2R	24764608	intron	CG3894 +	chr2R	24765622	exon	CG3894 +	chr2R_15_24760001	chr2R_24760001	RAL-703
824	chr2R	25141641	25141669	chr2R	25159351	25159373	roo	5	17708	2.5	4.0	3.2	1.2	17732	chr2R	25141641	intergenic	not near genes	chr2R	25150507	intergenic	not near genes	chr2R	25159373	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-703
829	chr3L	110192	110239	chr3L	119379	119426	roo	9	9186	4.0	3.0	3.5	2.0	9234	chr3L	110192	intergenic	not near genes	chr3L	114809	intergenic	not near genes	chr3L	119426	intergenic	not near genes	chr3L_9_110001	chr3L_110001	RAL-703
832	chr3L	402668	402710	chr3L	409740	409766	297	8	7068	4.0	2.5	3.2	1.9	7098	chr3L	402668	intergenic	not near genes	chr3L	406217	intergenic	not near genes	chr3L	409766	intergenic	not near genes	chr3L_8_405001	chr3L_405001	RAL-703
838	chr3L	857989	858011	chr3L	866480	866480	Tirant	7	8486	7.0	2.5	4.8	1.2	8491	chr3L	857989	intergenic	not near genes	chr3L	862234	intergenic	not near genes	chr3L	866480	intergenic	CG12502 +	chr3L_7_860001	chr3L_860001	RAL-703
840	chr3L	925157	925209	chr3L	932603	932655	mdg1	14	7443	5.0	2.0	3.5	3.1	7498	chr3L	925157	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932655	intron	Glut1 +	chr3L_14_925001	chr3L_925001	RAL-703
842	chr3L	939763	939786	chr3L	940894	940927	jockey	4	1138	6.0	3.5	4.8	0.7	1164	chr3L	939763	intron	Glut1 +	chr3L	940345	intron	Glut1 +	chr3L	940927	intron	Glut1 +	chr3L_4_940001	chr3L_940001	RAL-703
847	chr3L	1154120	1154152	chr3L	1163278	1163322	roo	5	9166	3.5	2.0	2.8	1.3	9202	chr3L	1154120	intron	bab2 -	chr3L	1158721	intron	bab2 -	chr3L	1163322	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-703
849	chr3L	1219601	1219620	chr3L	1227331	1227368	412	4	7742	2.5	3.5	3.0	1.0	7767	chr3L	1219601	intron	mwh +	chr3L	1223484	intron	mwh +	chr3L	1227368	intron	mwh +	chr3L_4_1220001	chr3L_1220001	RAL-703
854	chr3L	1505996	1506030	chr3L	1513592	1513647	17.6	8	7610	3.5	3.0	3.2	1.9	7651	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509822	intron,intron	Psa +,cue -	chr3L	1513647	intron,intron	Psa +,cue -	chr3L_8_1505001	chr3L_1505001	RAL-703
872	chr3L	2447489	2447534	chr3L	2456661	2456710	roo	5	9174	4.0	1.0	2.5	1.4	9221	chr3L	2447489	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456710	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-703
876	chr3L	2751437	2751462	chr3L	2755752	2755761	F-element	4	4311	3.5	3.5	3.5	0.9	4324	chr3L	2751437	intron	Mrtf -	chr3L	2753599	intron	Mrtf -	chr3L	2755761	intron	Mrtf -	chr3L_4_2750001	chr3L_2750001	RAL-703
878	chr3L	2927822	2927869	chr3L	2936119	2936166	Tirant	4	8297	1.5	3.5	2.5	1.1	8344	chr3L	2927822	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936166	intron	Shab +	chr3L_4_2930001	chr3L_2930001	RAL-703
880	chr3L	3061268	3061317	chr3L	3069870	3069917	Tirant	10	8595	1.0	2.0	1.5	4.0	8649	chr3L	3061268	intron	CG32486 -	chr3L	3065592	intron	CG32486 -	chr3L	3069917	intron	CG32486 -	chr3L_10_3065001	chr3L_3065001	RAL-703
884	chr3L	3281434	3281445	chr3L	3281950	3281959	Doc	4	515	7.5	5.0	6.2	0.6	525	chr3L	3281434	intron	CG12017 +	chr3L	3281696	intron	CG12017 +	chr3L	3281959	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-703
885	chr3L	3281455	3281472	chr3L	3281938	3281987	Doc	9	498	4.0	3.5	3.8	1.9	532	chr3L	3281455	intron	CG12017 +	chr3L	3281721	intron	CG12017 +	chr3L	3281987	intron	CG12017 +	chr3L_9_3280001	chr3L_3280001	RAL-703
889	chr3L	3475058	3475102	chr3L	3475521	3475546	jockey	7	460	3.0	2.0	2.5	2.0	488	chr3L	3475058	intron	CG42324 +	chr3L	3475302	intron	CG42324 +	chr3L	3475546	intron	CG42324 +	chr3L_7_3475001	chr3L_3475001	RAL-703
893	chr3L	3601282	3601322	chr3L	3606613	3606653	copia	5	5327	3.0	0.0	1.5	2.0	5371	chr3L	3601282	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606653	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-703
913	chr3L	4901117	4901149	chr3L	4907319	4907359	diver	7	6208	2.5	2.0	2.2	2.2	6242	chr3L	4901117	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907359	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	RAL-703
914	chr3L	5034148	5034169	chr3L	5043319	5043326	roo	7	9167	4.5	3.0	3.8	1.5	9178	chr3L	5034148	intron	Con -	chr3L	5038737	intron	Con -	chr3L	5043326	intron	Con -	chr3L_7_5035001	chr3L_5035001	RAL-703
915	chr3L	5045464	5045486	chr3L	5050245	5050287	Doc	7	4795	2.5	5.0	3.8	1.5	4823	chr3L	5045464	intron	Con -	chr3L	5047876	intron	Con -	chr3L	5050287	intron	Con -	chr3L_7_5045001	chr3L_5045001	RAL-703
927	chr3L	5537701	5537745	chr3L	5538063	5538105	jockey	4	361	4.0	4.5	4.2	0.8	404	chr3L	5537701	intergenic	not near genes	chr3L	5537903	intergenic	not near genes	chr3L	5538105	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-703
932	chr3L	5910019	5910062	chr3L	5910274	5910322	pogo	13	259	1.0	1.0	1.0	6.5	303	chr3L	5910019	intron	CG13288 +	chr3L	5910170	intron	CG13288 +	chr3L	5910322	intron	CG13288 +	chr3L_13_5910001	chr3L_5910001	RAL-703
933	chr3L	6040346	6040394	chr3L	6042722	6042756	Doc	9	2374	4.5	4.5	4.5	1.6	2410	chr3L	6040346	intergenic	Jon65Aiv +	chr3L	6041551	intergenic	not near genes	chr3L	6042756	intergenic	not near genes	chr3L_9_6040001	chr3L_6040001	RAL-703
937	chr3L	6220913	6220944	chr3L	6230070	6230116	roo	14	9169	4.5	2.5	3.5	3.1	9203	chr3L	6220913	5` UTR	pncr008:3L +	chr3L	6225514	intergenic	not near genes	chr3L	6230116	intergenic	not near genes	chr3L_14_6225001	chr3L_6225001	RAL-703
940	chr3L	6405645	6405691	chr3L	6432129	6432175	roo	8	26482	2.5	3.5	3.0	2.0	26530	chr3L	6405645	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432175	intron	CG42747 +	chr3L_8_6415001	chr3L_6415001	RAL-703
945	chr3L	6781111	6781146	chr3L	6783144	6783176	Doc	6	2032	1.5	3.0	2.2	1.9	2065	chr3L	6781111	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783176	intergenic	not near genes	chr3L_6_6780001	chr3L_6780001	RAL-703
947	chr3L	6855926	6855947	chr3L	6860724	6860751	Doc	6	4800	2.5	2.5	2.5	1.7	4825	chr3L	6855926	intergenic	not near genes	chr3L	6858338	intergenic	not near genes	chr3L	6860751	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	RAL-703
948	chr3L	6887501	6887542	chr3L	6895013	6895054	roo	10	7508	3.5	1.5	2.5	2.9	7553	chr3L	6887501	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895054	intergenic	not near genes	chr3L_10_6890001	chr3L_6890001	RAL-703
953	chr3L	6994896	6994912	chr3L	6995525	6995542	BS	5	630	0.0	0.5	0.2	4.2	646	chr3L	6994896	intergenic	bin +	chr3L	6995219	intergenic	not near genes	chr3L	6995542	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	RAL-703
967	chr3L	7916821	7916861	chr3L	7926012	7926043	roo	4	9187	1.0	2.5	1.8	1.4	9222	chr3L	7916821	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926043	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	RAL-703
968	chr3L	7985363	7985391	chr3L	7987691	7987739	NOF	9	2345	5.5	2.5	4.0	1.8	2376	chr3L	7985363	intron	nmo +	chr3L	7986551	intron	nmo +	chr3L	7987739	intron	nmo +	chr3L_9_7985001	chr3L_7985001	RAL-703
975	chr3L	8498301	8498318	chr3L	8505788	8505805	blood	5	7487	1.0	6.5	3.8	1.0	7504	chr3L	8498301	intron	CG43163 -	chr3L	8502053	intron	CG43163 -	chr3L	8505805	intron	CG43163 -	chr3L_5_8500001	chr3L_8500001	RAL-703
979	chr3L	8791257	8791308	chr3L	8796697	8796747	I-element	4	5440	5.5	0.0	2.8	1.1	5490	chr3L	8791257	exon	Fhos +	chr3L	8794002	intron	Fhos +	chr3L	8796747	intron	Fhos +	chr3L_4_8790001	chr3L_8790001	RAL-703
981	chr3L	9076916	9076957	chr3L	9084489	9084512	412	11	7573	3.5	4.5	4.0	2.2	7596	chr3L	9076916	exon	Tequila +	chr3L	9080714	intron	Tequila +	chr3L	9084512	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-703
984	chr3L	9130544	9130569	chr3L	9134322	9134327	412	4	3771	6.0	4.5	5.2	0.6	3783	chr3L	9130544	intergenic	bol -	chr3L	9132436	intergenic	not near genes	chr3L	9134327	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-703
985	chr3L	9164683	9164700	chr3L	9166170	9166187	hobo	8	1485	3.0	1.5	2.2	2.5	1504	chr3L	9164683	intron	Rdl -	chr3L	9165435	intron	Rdl -	chr3L	9166187	intron	Rdl -	chr3L_8_9165001	chr3L_9165001	RAL-703
986	chr3L	9219228	9219269	chr3L	9219917	9219944	jockey	9	675	3.5	6.0	4.8	1.6	716	chr3L	9219228	intergenic	not near genes	chr3L	9219586	intergenic	not near genes	chr3L	9219944	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-703
987	chr3L	9270597	9270644	chr3L	9278371	9278419	roo	6	7774	2.0	2.0	2.0	2.0	7822	chr3L	9270597	intron	GluRIB +	chr3L	9274508	intron	GluRIB +	chr3L	9278419	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	RAL-703
993	chr3L	9571889	9571924	chr3L	9572249	9572282	jockey	4	362	3.5	1.5	2.5	1.1	393	chr3L	9571889	intron	CG42673 +	chr3L	9572086	intron	CG42673 +	chr3L	9572282	intron	CG42673 +	chr3L_4_9570001	chr3L_9570001	RAL-703
997	chr3L	9929670	9929701	chr3L	9938463	9938500	roo	7	8799	2.0	2.5	2.2	2.2	8830	chr3L	9929670	intron	CG34356 +	chr3L	9934085	intron	CG34356 +	chr3L	9938500	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-703
1016	chr3L	11087021	11087088	chr3L	11088846	11088885	S-element	12	1807	0.5	1.5	1.0	6.0	1864	chr3L	11087021	intron	JIL-1 -	chr3L	11087953	intron	JIL-1 -	chr3L	11088885	intron	JIL-1 -	chr3L_12_11085001	chr3L_11085001	RAL-703
1021	chr3L	11264466	11264482	chr3L	11271440	11271454	17.6	4	6972	5.0	5.0	5.0	0.7	6988	chr3L	11264466	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271454	intergenic	not near genes	chr3L_4_11265001	chr3L_11265001	RAL-703
1023	chr3L	11329675	11329728	chr3L	11332893	11332936	jockey	12	3217	3.0	4.5	3.8	2.5	3261	chr3L	11329675	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332936	intergenic	not near genes	chr3L_12_11330001	chr3L_11330001	RAL-703
1028	chr3L	11564792	11564813	chr3L	11572406	11572420	412	7	7611	3.0	4.5	3.8	1.5	7628	chr3L	11564792	exon	CG33267 +	chr3L	11568606	intron	CG33267 +	chr3L	11572420	exon	CG33267 +	chr3L_7_11565001	chr3L_11565001	RAL-703
1035	chr3L	11723072	11723114	chr3L	11727884	11727929	Doc	5	4814	3.5	1.5	2.5	1.4	4857	chr3L	11723072	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727929	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	RAL-703
1040	chr3L	11864540	11864581	chr3L	11865852	11865868	pogo	10	1305	3.0	3.5	3.2	2.4	1328	chr3L	11864540	intron	CG44837 -	chr3L	11865204	intron	CG44837 -	chr3L	11865868	intron	CG44837 -	chr3L_10_11865001	chr3L_11865001	RAL-703
1064	chr3L	12874907	12874959	chr3L	12877219	12877271	jockey	10	2307	1.5	1.5	1.5	4.0	2364	chr3L	12874907	intergenic	not near genes	chr3L	12876089	intergenic	not near genes	chr3L	12877271	intergenic	not near genes	chr3L_10_12875001	chr3L_12875001	RAL-703
1070	chr3L	12919270	12919297	chr3L	12924746	12924746	Rt1c	8	5476	6.0	3.0	4.5	1.5	5476	chr3L	12919270	intergenic	not near genes	chr3L	12922008	intergenic	not near genes	chr3L	12924746	intergenic	not near genes	chr3L_8_12920001	chr3L_12920001	RAL-703
1096	chr3L	14245571	14245594	chr3L	14245671	14245706	1360	5	106	4.0	3.0	3.5	1.1	135	chr3L	14245571	3` UTR	CR44561 -	chr3L	14245638	3` UTR	CR44561 -	chr3L	14245706	intergenic	CR44561 -,CR44560 +	chr3L_5_14245001	chr3L_14245001	RAL-703
1097	chr3L	14267358	14267400	chr3L	14271817	14271834	F-element	9	4449	3.0	1.5	2.2	2.8	4476	chr3L	14267358	intergenic	not near genes	chr3L	14269596	intergenic	not near genes	chr3L	14271834	intergenic	not near genes	chr3L_9_14265001	chr3L_14265001	RAL-703
1098	chr3L	14295982	14296011	chr3L	14296487	14296516	roo	6	504	3.0	4.5	3.8	1.2	534	chr3L	14295982	intron	fz +	chr3L	14296249	intron	fz +	chr3L	14296516	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-703
1099	chr3L	14312027	14312059	chr3L	14316838	14316878	X-element	7	4822	2.0	5.0	3.5	1.6	4851	chr3L	14312027	exon	fz +	chr3L	14314452	intron	fz +	chr3L	14316878	intron	fz +	chr3L_7_14310001	chr3L_14310001	RAL-703
1103	chr3L	14468446	14468473	chr3L	14473653	14473699	copia	7	5217	3.5	3.5	3.5	1.6	5253	chr3L	14468446	intron	bbg -	chr3L	14471072	intron	bbg -	chr3L	14473699	intron	bbg -	chr3L_7_14470001	chr3L_14470001	RAL-703
1107	chr3L	14721171	14721206	chr3L	14723028	14723068	Rt1c	9	1855	4.5	3.0	3.8	1.9	1897	chr3L	14721171	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723068	intron	ome +	chr3L_9_14720001	chr3L_14720001	RAL-703
1108	chr3L	14725585	14725614	chr3L	14728603	14728632	Doc	4	3014	3.0	4.0	3.5	0.9	3047	chr3L	14725585	intron	ome +	chr3L	14727108	intron	ome +	chr3L	14728632	intron	ome +	chr3L_4_14725001	chr3L_14725001	RAL-703
1115	chr3L	15085046	15085071	chr3L	15086232	15086241	1360	4	1182	3.0	5.5	4.2	0.8	1195	chr3L	15085046	intron	cp309 -	chr3L	15085644	intron	cp309 -	chr3L	15086241	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-703
1122	chr3L	15554916	15554944	chr3L	15556723	15556740	S-element	5	1803	2.5	5.0	3.8	1.0	1824	chr3L	15554916	intron	AGO2 +	chr3L	15555828	intron	AGO2 +	chr3L	15556740	intron	AGO2 +	chr3L_5_15555001	chr3L_15555001	RAL-703
1129	chr3L	15899222	15899253	chr3L	15899790	15899820	jockey	9	573	2.5	3.0	2.8	2.4	598	chr3L	15899222	intergenic	pHCl -	chr3L	15899521	intergenic	pHCl -	chr3L	15899820	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	RAL-703
1135	chr3L	16184097	16184116	chr3L	16188930	16188954	X-element	4	4835	8.0	8.0	8.0	0.4	4857	chr3L	16184097	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188954	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-703
1140	chr3L	16493994	16494012	chr3L	16494513	16494549	jockey	5	533	0.0	3.5	1.8	1.8	555	chr3L	16493994	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494272	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494549	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_5_16490001	chr3L_16490001	RAL-703
1147	chr3L	16945715	16945760	chr3L	16954885	16954912	roo	11	9167	4.5	7.0	5.8	1.6	9197	chr3L	16945715	exon	Obp73a +	chr3L	16950314	intergenic	not near genes	chr3L	16954912	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-703
1149	chr3L	17034923	17034957	chr3L	17035131	17035159	G2	6	207	1.5	2.5	2.0	2.0	236	chr3L	17034923	intergenic	not near genes	chr3L	17035041	intergenic	not near genes	chr3L	17035159	intergenic	not near genes	chr3L_6_17035001	chr3L_17035001	RAL-703
1150	chr3L	17084987	17085038	chr3L	17094156	17094207	roo	10	9169	2.0	4.0	3.0	2.5	9220	chr3L	17084987	intron	Rbp6 -	chr3L	17089597	intron	Rbp6 -	chr3L	17094207	intron	Rbp6 -	chr3L_10_17085001	chr3L_17085001	RAL-703
1159	chr3L	17516976	17516987	chr3L	17524539	17524551	412	4	7569	1.0	1.0	1.0	2.0	7575	chr3L	17516976	intron	CG7564 +	chr3L	17520764	intron	CG7564 +	chr3L	17524551	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-703
1163	chr3L	17799793	17799837	chr3L	17801600	17801644	S-element	8	1806	2.0	2.0	2.0	2.7	1851	chr3L	17799793	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801644	intron	NUCB1 -	chr3L_8_17800001	chr3L_17800001	RAL-703
1165	chr3L	17918364	17918394	chr3L	17921187	17921216	opus	7	2819	4.0	3.5	3.8	1.5	2852	chr3L	17918364	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921216	intergenic	not near genes	chr3L_7_17915001	chr3L_17915001	RAL-703
1184	chr3L	18528612	18528658	chr3L	18537793	18537832	roo	4	9174	0.5	2.5	1.5	1.6	9220	chr3L	18528612	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537832	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	RAL-703
1192	chr3L	18772393	18772420	chr3L	18781094	18781121	roo	6	8701	2.5	4.5	3.5	1.3	8728	chr3L	18772393	intron	ftz-f1 -	chr3L	18776757	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_6_18775001	chr3L_18775001	RAL-703
1193	chr3L	18833775	18833807	chr3L	18834949	18834991	1360	5	1176	1.0	1.5	1.2	2.3	1216	chr3L	18833775	intron	Indy -	chr3L	18834383	intron	Indy -	chr3L	18834991	intron	Indy -	chr3L_5_18830001	chr3L_18830001	RAL-703
1200	chr3L	19008834	19008866	chr3L	19009176	19009223	jockey	4	351	1.5	2.0	1.8	1.4	389	chr3L	19008834	intron	nkd -	chr3L	19009028	intron	nkd -	chr3L	19009223	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-703
1202	chr3L	19115634	19115672	chr3L	19115826	19115852	BS	6	191	2.5	3.0	2.8	1.6	218	chr3L	19115634	intron	CG14082 -	chr3L	19115743	intron	CG14082 -	chr3L	19115852	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-703
1203	chr3L	19117036	19117072	chr3L	19124487	19124538	mdg1	13	7459	2.5	3.0	2.8	3.4	7502	chr3L	19117036	intron	CG14082 -	chr3L	19120787	intron	CG14082 -	chr3L	19124538	intron	CG14082 -	chr3L_13_19120001	chr3L_19120001	RAL-703
1206	chr3L	19208054	19208090	chr3L	19209433	19209483	Doc	8	1389	4.0	3.0	3.5	1.8	1429	chr3L	19208054	intron	fz2 -	chr3L	19208768	intron	fz2 -	chr3L	19209483	intron	fz2 -	chr3L_8_19205001	chr3L_19205001	RAL-703
1219	chr3L	19848490	19848502	chr3L	19857700	19857712	roo	5	9209	4.5	3.0	3.8	1.0	9222	chr3L	19848490	intron	Papss +	chr3L	19853101	intron	Papss +	chr3L	19857712	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-703
1220	chr3L	19848505	19848532	chr3L	19857692	19857741	roo	4	9204	3.5	1.5	2.5	1.1	9236	chr3L	19848505	intron	Papss +	chr3L	19853123	intron	Papss +	chr3L	19857741	intron	Papss +	chr3L_4_19850001	chr3L_19850001	RAL-703
1221	chr3L	19861817	19861850	chr3L	19863621	19863658	S-element	4	1807	3.0	3.0	3.0	1.0	1841	chr3L	19861817	5` UTR	CR45433 +	chr3L	19862738	intergenic	not near genes	chr3L	19863658	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-703
1225	chr3L	20113646	20113673	chr3L	20122922	20122950	roo	5	9277	2.0	2.0	2.0	1.7	9304	chr3L	20113646	intergenic	not near genes	chr3L	20118298	intergenic	not near genes	chr3L	20122950	intergenic	not near genes	chr3L_5_20115001	chr3L_20115001	RAL-703
1232	chr3L	20476737	20476780	chr3L	20484356	20484399	springer	7	7616	3.0	5.0	4.0	1.4	7662	chr3L	20476737	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484399	3` UTR	ZnT77C -	chr3L_7_20480001	chr3L_20480001	RAL-703
1233	chr3L	20590043	20590090	chr3L	20590602	20590630	412	6	551	2.5	3.5	3.0	1.5	587	chr3L	20590043	intergenic	not near genes	chr3L	20590336	intergenic	not near genes	chr3L	20590630	intergenic	not near genes	chr3L_6_20590001	chr3L_20590001	RAL-703
1243	chr3L	21014898	21014948	chr3L	21023399	21023430	Tirant	12	8492	6.0	5.0	5.5	1.8	8532	chr3L	21014898	intron	skd -	chr3L	21019164	intron	skd -	chr3L	21023430	intron	skd -	chr3L_12_21015001	chr3L_21015001	RAL-703
1246	chr3L	21151856	21151897	chr3L	21156950	21156988	flea	10	5097	6.0	2.5	4.2	1.9	5132	chr3L	21151856	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156988	intron	Ac78C -	chr3L_10_21150001	chr3L_21150001	RAL-703
1248	chr3L	21306147	21306173	chr3L	21315307	21315352	roo	5	9172	3.5	2.0	2.8	1.3	9205	chr3L	21306147	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310750	intron	Pc -	chr3L	21315352	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-703
1250	chr3L	21361705	21361743	chr3L	21362679	21362715	G2	5	970	1.5	1.5	1.5	2.0	1010	chr3L	21361705	intergenic	CG32440 +	chr3L	21362210	intergenic	not near genes	chr3L	21362715	intergenic	not near genes	chr3L_5_21360001	chr3L_21360001	RAL-703
1255	chr3L	21498828	21498870	chr3L	21500479	21500517	1360	7	1650	2.5	8.0	5.2	1.1	1689	chr3L	21498828	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499672	intron	Glg1 -	chr3L	21500517	intron	Glg1 -	chr3L_7_21495001	chr3L_21495001	RAL-703
1256	chr3L	21749302	21749346	chr3L	21754477	21754502	Doc	7	5167	4.0	4.5	4.2	1.3	5200	chr3L	21749302	intron	Syn1 -	chr3L	21751902	intron	Syn1 -	chr3L	21754502	intron	Syn1 -	chr3L_7_21750001	chr3L_21750001	RAL-703
1260	chr3L	22099667	22099705	chr3L	22105873	22105910	3S18	6	6203	5.5	2.5	4.0	1.2	6243	chr3L	22099667	intergenic	not near genes	chr3L	22102788	intergenic	not near genes	chr3L	22105910	intergenic	not near genes	chr3L_6_22100001	chr3L_22100001	RAL-703
1264	chr3L	22555792	22555802	chr3L	22563254	22563264	blood	5	7468	2.0	3.5	2.8	1.3	7472	chr3L	22555792	intergenic	not near genes	chr3L	22559528	intergenic	not near genes	chr3L	22563264	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-703
1266	chr3L	22577611	22577642	chr3L	22582410	22582450	Doc	6	4802	5.5	5.5	5.5	0.9	4839	chr3L	22577611	intergenic	not near genes	chr3L	22580030	intergenic	not near genes	chr3L	22582450	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-703
1267	chr3L	22617169	22617216	chr3L	22624640	22624661	blood	9	7467	3.5	4.0	3.8	1.9	7492	chr3L	22617169	intron	CG14459 -	chr3L	22620915	intron	CG14459 -	chr3L	22624661	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-703
1269	chr3L	22761372	22761416	chr3L	22766826	22766870	Ivk	10	5448	2.5	6.0	4.2	1.9	5498	chr3L	22761372	intron	SPoCk +	chr3L	22764121	intron	SPoCk +	chr3L	22766870	intron	SPoCk +	chr3L_10_22760001	chr3L_22760001	RAL-703
1280	chr3L	22989844	22989890	chr3L	22996836	22996878	297	4	6990	2.5	2.5	2.5	1.1	7034	chr3L	22989844	intergenic	not near genes	chr3L	22993361	intergenic	not near genes	chr3L	22996878	intergenic	not near genes	chr3L_4_22990001	chr3L_22990001	RAL-703
1285	chr3L	23665515	23665529	chr3L	23665625	23665639	gypsy8	8	108	15.5	16.0	15.8	0.5	124	chr3L	23665515	intron	AGO3 +	chr3L	23665577	intron	AGO3 +	chr3L	23665639	intron	AGO3 +	chr3L_8_23665001	chr3L_23665001	RAL-703
1286	chr3L	24012393	24012438	chr3L	24020754	24020780	roo	6	8355	0.0	1.0	0.5	4.0	8387	chr3L	24012393	intergenic	not near genes	chr3L	24016586	intergenic	not near genes	chr3L	24020780	intergenic	not near genes	chr3L_6_24015001	chr3L_24015001	RAL-703
1297	chr3R	1850868	1850906	chr3R	1853514	1853553	INE-1	6	2646	0.0	2.5	1.2	2.7	2685	chr3R	1850868	intron	CG42623 +	chr3R	1852210	intron	CG42623 +	chr3R	1853553	intron	CG42623 +	chr3R_6_1850001	chr3R_1850001	RAL-703
1301	chr3R	4206051	4206094	chr3R	4211644	4211688	mdg3	8	5590	4.5	1.5	3.0	2.0	5637	chr3R	4206051	intron	CG14636 -	chr3R	4208870	intron	CG14636 -	chr3R	4211688	intron	CG14636 -	chr3R_8_4205001	chr3R_4205001	RAL-703
1302	chr3R	4408393	4408434	chr3R	4412716	4412758	Juan	9	4324	5.5	3.0	4.2	1.7	4365	chr3R	4408393	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412758	intron	CG32944 -	chr3R_9_4410001	chr3R_4410001	RAL-703
1308	chr3R	4753225	4753272	chr3R	4757548	4757565	F-element	8	4317	6.5	6.0	6.2	1.1	4340	chr3R	4753225	intron,intron	atms +,CG44098 -	chr3R	4755395	intron,intron	atms +,CG44098 -	chr3R	4757565	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-703
1311	chr3R	4887475	4887510	chr3R	4894856	4894906	rover	7	7395	1.0	2.5	1.8	2.5	7431	chr3R	4887475	intergenic	not near genes	chr3R	4891190	intergenic	not near genes	chr3R	4894906	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	RAL-703
1315	chr3R	5045836	5045871	chr3R	5052955	5052990	HMS-Beagle	6	7118	2.5	3.0	2.8	1.6	7154	chr3R	5045836	intron	CR43635 -	chr3R	5049413	intergenic	not near genes	chr3R	5052990	intergenic	CR45588 -	chr3R_6_5045001	chr3R_5045001	RAL-703
1316	chr3R	5067965	5068012	chr3R	5073502	5073549	mdg3	8	5532	1.5	3.0	2.2	2.5	5584	chr3R	5067965	intergenic	not near genes	chr3R	5070757	intergenic	not near genes	chr3R	5073549	intergenic	not near genes	chr3R_8_5070001	chr3R_5070001	RAL-703
1323	chr3R	5338391	5338428	chr3R	5343571	5343606	Rt1c	8	5187	4.0	5.5	4.8	1.4	5215	chr3R	5338391	intron	mtd -	chr3R	5340998	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_8_5340001	chr3R_5340001	RAL-703
1326	chr3R	5445942	5445980	chr3R	5452420	5452460	Burdock	4	6480	4.0	3.0	3.5	0.9	6518	chr3R	5445942	intron	CG14669 +	chr3R	5449201	intron	CG14669 +	chr3R	5452460	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-703
1329	chr3R	5745999	5746028	chr3R	5746260	5746288	pogo	7	258	4.0	3.0	3.5	1.6	289	chr3R	5745999	3` UTR	Madm +	chr3R	5746144	3` UTR	Madm +	chr3R	5746288	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-703
1330	chr3R	5746997	5747037	chr3R	5753207	5753246	diver	10	6208	2.0	4.0	3.0	2.5	6249	chr3R	5746997	intergenic	Madm +	chr3R	5750122	intergenic	not near genes	chr3R	5753246	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	RAL-703
1331	chr3R	5809102	5809125	chr3R	5809371	5809379	pogo	4	266	6.0	2.5	4.2	0.8	277	chr3R	5809102	3` UTR	CG11000 +	chr3R	5809240	3` UTR	CG11000 +	chr3R	5809379	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	RAL-703
1332	chr3R	5822362	5822404	chr3R	5823549	5823591	1360	13	1184	4.0	4.0	4.0	2.6	1229	chr3R	5822362	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823591	3` UTR	CG2023 -	chr3R_13_5820001	chr3R_5820001	RAL-703
1333	chr3R	5927560	5927582	chr3R	5927799	5927840	pogo	4	253	4.5	2.5	3.5	0.9	280	chr3R	5927560	intron	CG34113 -	chr3R	5927700	intron	CG34113 -	chr3R	5927840	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-703
1335	chr3R	6015953	6015993	chr3R	6024441	6024477	Tirant	10	8485	2.0	1.0	1.5	4.0	8524	chr3R	6015953	intergenic	not near genes	chr3R	6020215	intergenic	not near genes	chr3R	6024477	intergenic	not near genes	chr3R_10_6020001	chr3R_6020001	RAL-703
1338	chr3R	6206270	6206318	chr3R	6206506	6206553	BS	10	232	1.5	2.0	1.8	3.6	283	chr3R	6206270	exon	Osi24 +	chr3R	6206412	intron	Osi24 +	chr3R	6206553	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	RAL-703
1341	chr3R	6510012	6510051	chr3R	6515113	6515151	jockey	5	5101	0.5	2.0	1.2	2.3	5139	chr3R	6510012	intergenic	not near genes	chr3R	6512582	intergenic	not near genes	chr3R	6515151	intergenic	not near genes	chr3R_5_6510001	chr3R_6510001	RAL-703
1342	chr3R	6737504	6737517	chr3R	6739289	6739323	Doc	5	1797	4.0	2.5	3.2	1.2	1819	chr3R	6737504	intron	pb -	chr3R	6738414	intron	pb -	chr3R	6739323	intron	pb -	chr3R_5_6735001	chr3R_6735001	RAL-703
1365	chr3R	7729451	7729492	chr3R	7737409	7737448	Stalker2	10	7955	5.0	3.5	4.2	1.9	7997	chr3R	7729451	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737448	intergenic	not near genes	chr3R_10_7730001	chr3R_7730001	RAL-703
1367	chr3R	7973300	7973335	chr3R	7974381	7974417	1360	5	1076	8.0	3.0	5.5	0.8	1117	chr3R	7973300	intergenic	not near genes	chr3R	7973858	intergenic	not near genes	chr3R	7974417	3` UTR	CD98hc -	chr3R_5_7970001	chr3R_7970001	RAL-703
1368	chr3R	8094401	8094439	chr3R	8099717	8099751	Transpac	4	5320	1.0	2.5	1.8	1.4	5350	chr3R	8094401	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099751	intron	CG7900 +	chr3R_4_8095001	chr3R_8095001	RAL-703
1370	chr3R	8207555	8207585	chr3R	8208418	8208450	F-element	4	860	3.0	4.5	3.8	0.8	895	chr3R	8207555	intergenic	not near genes	chr3R	8208002	intergenic	not near genes	chr3R	8208450	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RAL-703
1373	chr3R	8403010	8403041	chr3R	8412171	8412207	roo	8	9169	1.5	3.0	2.2	2.5	9197	chr3R	8403010	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_8_8405001	chr3R_8405001	RAL-703
1376	chr3R	8570470	8570509	chr3R	8575126	8575164	HMS-Beagle	8	4653	1.0	3.0	2.0	2.7	4694	chr3R	8570470	intergenic	not near genes	chr3R	8572817	intergenic	not near genes	chr3R	8575164	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	RAL-703
1377	chr3R	8601765	8601798	chr3R	8610924	8610970	roo	4	9168	2.0	2.0	2.0	1.3	9205	chr3R	8601765	intron	5-HT2B +	chr3R	8606368	intron	5-HT2B +	chr3R	8610970	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-703
1378	chr3R	8707360	8707383	chr3R	8709811	8709844	jockey	7	2458	5.5	4.5	5.0	1.2	2484	chr3R	8707360	intergenic	not near genes	chr3R	8708602	intergenic	not near genes	chr3R	8709844	intergenic	not near genes	chr3R_7_8705001	chr3R_8705001	RAL-703
1389	chr3R	9278777	9278808	chr3R	9284045	9284088	Rt1a	6	5276	6.5	5.0	5.8	0.9	5311	chr3R	9278777	intergenic	not near genes	chr3R	9281432	intergenic	not near genes	chr3R	9284088	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-703
1402	chr3R	10231765	10231813	chr3R	10237362	10237407	mdg3	8	5596	1.0	2.0	1.5	3.2	5642	chr3R	10231765	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237407	intron	CG42795 +	chr3R_8_10230001	chr3R_10230001	RAL-703
1416	chr3R	10957851	10957885	chr3R	10963255	10963294	Rt1c	4	5402	3.0	3.0	3.0	1.0	5443	chr3R	10957851	intergenic	not near genes	chr3R	10960572	intergenic	not near genes	chr3R	10963294	intergenic	not near genes	chr3R_4_10960001	chr3R_10960001	RAL-703
1422	chr3R	11379222	11379234	chr3R	11388397	11388401	roo	5	9172	8.5	4.0	6.2	0.7	9179	chr3R	11379222	intron	pros +	chr3R	11383812	intron	pros +	chr3R	11388401	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-703
1429	chr3R	11841056	11841095	chr3R	11846266	11846299	BS	12	5208	2.0	4.5	3.2	2.9	5243	chr3R	11841056	intron	CG6959 -	chr3R	11843678	intron	CG6959 -	chr3R	11846299	intron	CG6959 -	chr3R_12_11840001	chr3R_11840001	RAL-703
1432	chr3R	12022868	12022913	chr3R	12025065	12025106	pogo	6	2193	1.5	4.5	3.0	1.5	2238	chr3R	12022868	intergenic	not near genes	chr3R	12023987	intergenic	not near genes	chr3R	12025106	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-703
1449	chr3R	12864540	12864591	chr3R	12865045	12865096	roo	8	505	1.0	0.5	0.8	4.4	556	chr3R	12864540	intergenic	not near genes	chr3R	12864818	intergenic	not near genes	chr3R	12865096	intergenic	not near genes	chr3R_8_12860001	chr3R_12860001	RAL-703
1460	chr3R	13135825	13135856	chr3R	13138009	13138041	pogo	4	2189	5.0	2.0	3.5	0.9	2216	chr3R	13135825	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136933	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13135001	chr3R_13135001	RAL-703
1461	chr3R	13143025	13143063	chr3R	13148618	13148652	mdg3	9	5588	3.0	2.5	2.8	2.4	5627	chr3R	13143025	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145838	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148652	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RAL-703
1479	chr3R	14246394	14246412	chr3R	14247896	14247928	jockey	5	1506	4.0	4.5	4.2	1.0	1534	chr3R	14246394	intergenic	not near genes	chr3R	14247161	intergenic	not near genes	chr3R	14247928	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-703
1499	chr3R	15041410	15041440	chr3R	15045198	15045228	Doc	6	3788	3.5	1.5	2.5	1.7	3818	chr3R	15041410	intergenic	not near genes	chr3R	15043319	intergenic	not near genes	chr3R	15045228	intergenic	not near genes	chr3R_6_15040001	chr3R_15040001	RAL-703
1501	chr3R	15079805	15079838	chr3R	15080066	15080093	pogo	5	257	3.0	3.0	3.0	1.2	288	chr3R	15079805	3` UTR	CG6966 -	chr3R	15079949	3` UTR	CG6966 -	chr3R	15080093	3` UTR	CG6966 -	chr3R_5_15075001	chr3R_15075001	RAL-703
1505	chr3R	15132044	15132069	chr3R	15135124	15135149	Juan	18	3077	10.0	13.0	11.5	1.4	3105	chr3R	15132044	intergenic	CG42788 -	chr3R	15133596	intergenic	not near genes	chr3R	15135149	3` UTR	CG6912 -	chr3R_18_15130001	chr3R_15130001	RAL-703
1511	chr3R	15601155	15601192	chr3R	15608697	15608719	412	7	7539	5.0	7.0	6.0	1.0	7564	chr3R	15601155	intergenic	not near genes	chr3R	15604937	intergenic	not near genes	chr3R	15608719	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-703
1512	chr3R	15618724	15618763	chr3R	15626218	15626257	blood	6	7492	2.0	4.0	3.0	1.5	7533	chr3R	15618724	intergenic	not near genes	chr3R	15622490	intergenic	not near genes	chr3R	15626257	intergenic	not near genes	chr3R_6_15620001	chr3R_15620001	RAL-703
1524	chr3R	16756309	16756349	chr3R	16762520	16762528	diver	7	6200	3.5	2.5	3.0	1.8	6219	chr3R	16756309	intron	bxd -	chr3R	16759418	intron	bxd -	chr3R	16762528	intron	bxd -	chr3R_7_16755001	chr3R_16755001	RAL-703
1535	chr3R	17294652	17294694	chr3R	17295099	17295123	BS	12	446	3.5	5.5	4.5	2.2	471	chr3R	17294652	intergenic	not near genes	chr3R	17294888	intergenic	not near genes	chr3R	17295123	intergenic	not near genes	chr3R_12_17290001	chr3R_17290001	RAL-703
1536	chr3R	17346686	17346709	chr3R	17348269	17348292	F-element	5	1579	3.0	5.0	4.0	1.0	1606	chr3R	17346686	intron	beat-IIa -	chr3R	17347489	intron	beat-IIa -	chr3R	17348292	intron	beat-IIa -	chr3R_5_17345001	chr3R_17345001	RAL-703
1542	chr3R	17591293	17591327	chr3R	17591724	17591726	F-element	6	440	2.5	3.5	3.0	1.5	433	chr3R	17591293	intergenic	not near genes	chr3R	17591510	intergenic	not near genes	chr3R	17591726	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	RAL-703
1545	chr3R	17657653	17657661	chr3R	17657803	17657832	INE-1	5	166	0.0	2.5	1.2	2.3	179	chr3R	17657653	intron	CG14322 +	chr3R	17657742	intron	CG14322 +	chr3R	17657832	intron	CG14322 +	chr3R_5_17655001	chr3R_17655001	RAL-703
1584	chr3R	20109521	20109567	chr3R	20114743	20114777	copia	5	5217	1.0	1.5	1.2	2.3	5256	chr3R	20109521	intergenic	not near genes	chr3R	20112149	intergenic	not near genes	chr3R	20114777	intergenic	CG10887 +	chr3R_5_20110001	chr3R_20110001	RAL-703
1585	chr3R	20156687	20156716	chr3R	20165867	20165875	roo	4	9180	3.5	2.0	2.8	1.1	9188	chr3R	20156687	intergenic	not near genes	chr3R	20161281	intergenic	not near genes	chr3R	20165875	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-703
1589	chr3R	20245261	20245299	chr3R	20248889	20248930	F-element	5	3627	3.0	2.0	2.5	1.4	3669	chr3R	20245261	3` UTR	Nlg4 +	chr3R	20247096	intergenic	not near genes	chr3R	20248930	intergenic	not near genes	chr3R_5_20245001	chr3R_20245001	RAL-703
1591	chr3R	20266502	20266546	chr3R	20272992	20273037	Burdock	16	6488	0.5	1.0	0.8	8.9	6535	chr3R	20266502	intron	cic +	chr3R	20269770	intron	cic +	chr3R	20273037	intron	cic +	chr3R_16_20265001	chr3R_20265001	RAL-703
1592	chr3R	20330983	20331018	chr3R	20331489	20331524	roo	4	506	3.5	1.0	2.2	1.2	541	chr3R	20330983	intergenic	Sirt2 +	chr3R	20331254	intergenic	Sirt2 +	chr3R	20331524	intergenic	not near genes	chr3R_4_20330001	chr3R_20330001	RAL-703
1596	chr3R	20506585	20506616	chr3R	20507393	20507408	BS	7	816	1.0	4.5	2.8	1.8	823	chr3R	20506585	intergenic	Or92a +	chr3R	20506996	intergenic	CG4288 -	chr3R	20507408	3` UTR	CG4288 -	chr3R_7_20505001	chr3R_20505001	RAL-703
1608	chr3R	21141662	21141687	chr3R	21150156	21150169	Tirant	11	8496	6.0	1.5	3.8	2.3	8507	chr3R	21141662	intron	SNF4Agamma +	chr3R	21145916	intron	SNF4Agamma +	chr3R	21150169	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	RAL-703
1620	chr3R	21761104	21761151	chr3R	21768514	21768539	mdg1	12	7406	7.0	4.0	5.5	1.8	7435	chr3R	21761104	exon	CG42335 +	chr3R	21764822	intron	CG42335 +	chr3R	21768539	exon	CG42335 +	chr3R_12_21760001	chr3R_21760001	RAL-703
1629	chr3R	22234697	22234709	chr3R	22236003	22236006	pogo	5	1322	2.0	3.0	2.5	1.4	1309	chr3R	22234697	intron	SKIP +	chr3R	22235352	intron	SKIP +	chr3R	22236006	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-703
1634	chr3R	22450525	22450566	chr3R	22453185	22453202	NOF	9	2653	4.5	4.0	4.2	1.7	2677	chr3R	22450525	intron	CG34376 +	chr3R	22451864	intron	CG34376 +	chr3R	22453202	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-703
1650	chr3R	23558395	23558421	chr3R	23560189	23560222	Bari1	9	1797	3.0	3.0	3.0	2.2	1827	chr3R	23558395	intron	beat-IV +	chr3R	23559308	intron	beat-IV +	chr3R	23560222	intron	beat-IV +	chr3R_9_23555001	chr3R_23555001	RAL-703
1653	chr3R	23684679	23684725	chr3R	23685184	23685206	roo	7	493	2.0	4.5	3.2	1.7	527	chr3R	23684679	exon	CG18754 +	chr3R	23684942	intron	CG18754 +	chr3R	23685206	exon	CG18754 +	chr3R_7_23680001	chr3R_23680001	RAL-703
1659	chr3R	24072088	24072110	chr3R	24072530	24072567	jockey	4	452	1.5	2.0	1.8	1.4	479	chr3R	24072088	intron	4EHP -	chr3R	24072328	intron	4EHP -	chr3R	24072567	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-703
1660	chr3R	24076916	24076945	chr3R	24078394	24078432	hobo	8	1480	1.0	5.5	3.2	1.9	1516	chr3R	24076916	intron	4EHP -	chr3R	24077674	intron	4EHP -	chr3R	24078432	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-703
1662	chr3R	24207226	24207239	chr3R	24212305	24212310	flea	6	5087	6.0	6.5	6.2	0.8	5084	chr3R	24207226	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212310	intron	twin -	chr3R_6_24205001	chr3R_24205001	RAL-703
1668	chr3R	24493269	24493293	chr3R	24493516	24493528	BS	4	245	7.0	5.5	6.2	0.6	259	chr3R	24493269	intergenic	not near genes	chr3R	24493398	intergenic	not near genes	chr3R	24493528	intergenic	not near genes	chr3R_4_24490001	chr3R_24490001	RAL-703
1674	chr3R	24730075	24730112	chr3R	24732468	24732483	Doc	8	2386	3.5	0.5	2.0	2.7	2408	chr3R	24730075	intron	tok +	chr3R	24731279	intron	tok +	chr3R	24732483	intron	tok +	chr3R_8_24730001	chr3R_24730001	RAL-703
1676	chr3R	24927134	24927153	chr3R	24931920	24931954	Doc	9	4805	5.0	2.0	3.5	2.0	4820	chr3R	24927134	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931954	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	RAL-703
1687	chr3R	25725814	25725860	chr3R	25734993	25735039	roo	4	9180	1.0	2.5	1.8	1.4	9225	chr3R	25725814	intron	LpR2 -	chr3R	25730426	intron	LpR2 -	chr3R	25735039	intron	LpR2 -	chr3R_4_25730001	chr3R_25730001	RAL-703
1691	chr3R	25832681	25832720	chr3R	25841879	25841922	roo	4	9191	4.5	5.0	4.8	0.7	9241	chr3R	25832681	exon	alpha4GT2 +	chr3R	25837302	intron	alpha4GT2 +	chr3R	25841922	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-703
1699	chr3R	26376308	26376348	chr3R	26385488	26385525	roo	9	9177	4.5	0.0	2.2	2.8	9217	chr3R	26376308	intergenic	not near genes	chr3R	26380916	intergenic	not near genes	chr3R	26385525	intergenic	not near genes	chr3R_9_26380001	chr3R_26380001	RAL-703
1700	chr3R	26510502	26510519	chr3R	26519580	26519599	roo	8	9078	3.0	3.0	3.0	2.0	9097	chr3R	26510502	intron	plum -	chr3R	26515050	intron	plum -	chr3R	26519599	intron,5` UTR	plum -,CR45226 +	chr3R_8_26515001	chr3R_26515001	RAL-703
1703	chr3R	26558313	26558351	chr3R	26565645	26565681	Stalker4	6	7325	2.5	5.0	3.8	1.2	7368	chr3R	26558313	intron	scrib +	chr3R	26561997	intron	scrib +	chr3R	26565681	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-703
1707	chr3R	26642729	26642757	chr3R	26643140	26643170	jockey	5	413	2.5	3.5	3.0	1.2	441	chr3R	26642729	intergenic	not near genes	chr3R	26642950	intergenic	not near genes	chr3R	26643170	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-703
1711	chr3R	26810537	26810584	chr3R	26811042	26811088	roo	11	502	3.5	3.5	3.5	2.4	551	chr3R	26810537	intron	Tl +	chr3R	26810812	intron	Tl +	chr3R	26811088	intron	Tl +	chr3R_11_26810001	chr3R_26810001	RAL-703
1715	chr3R	27007383	27007436	chr3R	27016538	27016562	roo	10	9149	5.0	2.5	3.8	2.1	9179	chr3R	27007383	intron	RYa-R +	chr3R	27011972	intron	RYa-R +	chr3R	27016562	intron	RYa-R +	chr3R_10_27010001	chr3R_27010001	RAL-703
1718	chr3R	27140503	27140538	chr3R	27148133	27148168	412	6	7626	3.5	4.0	3.8	1.2	7665	chr3R	27140503	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148168	intron	CG6051 -	chr3R_6_27140001	chr3R_27140001	RAL-703
1725	chr3R	27521159	27521184	chr3R	27530367	27530413	roo	4	9224	1.5	3.0	2.2	1.2	9254	chr3R	27521159	intron	CG12885 +	chr3R	27525786	intron	CG12885 +	chr3R	27530413	intron	CG12885 +	chr3R_4_27525001	chr3R_27525001	RAL-703
1731	chr3R	27725564	27725597	chr3R	27731026	27731043	I-element	9	5460	2.5	2.0	2.2	2.8	5479	chr3R	27725564	intergenic	not near genes	chr3R	27728304	intergenic	not near genes	chr3R	27731043	intergenic	not near genes	chr3R_9_27725001	chr3R_27725001	RAL-703
1734	chr3R	27856759	27856779	chr3R	27858246	27858246	hopper2	6	1488	4.0	4.0	4.0	1.2	1487	chr3R	27856759	intron	CG34353 -	chr3R	27857502	intron	CG34353 -	chr3R	27858246	intron	CG34353 -	chr3R_6_27855001	chr3R_27855001	RAL-703
1735	chr3R	27875687	27875722	chr3R	27882762	27882796	297	10	7072	1.5	5.5	3.5	2.2	7109	chr3R	27875687	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882796	intron	CG34353 -	chr3R_10_27875001	chr3R_27875001	RAL-703
1739	chr3R	28068489	28068528	chr3R	28073935	28073959	I-element	6	5454	0.5	1.5	1.0	3.0	5470	chr3R	28068489	intron	CG34362 +	chr3R	28071224	intron	CG34362 +	chr3R	28073959	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-703
1742	chr3R	28173663	28173701	chr3R	28181113	28181142	mdg1	6	7448	3.5	1.0	2.2	1.9	7479	chr3R	28173663	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181142	intron	CG34354 +	chr3R_6_28175001	chr3R_28175001	RAL-703
1744	chr3R	28302090	28302125	chr3R	28302549	28302584	jockey	9	458	4.0	5.0	4.5	1.6	494	chr3R	28302090	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302584	intergenic	not near genes	chr3R_9_28300001	chr3R_28300001	RAL-703
1757	chr3R	28758266	28758279	chr3R	28763902	28763915	roo	4	5636	3.0	0.5	1.8	1.4	5649	chr3R	28758266	intergenic	aqrs -	chr3R	28761090	intergenic	not near genes	chr3R	28763915	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-703
1758	chr3R	28792869	28792904	chr3R	28797965	28798016	jockey	6	5102	2.0	4.5	3.2	1.4	5147	chr3R	28792869	intergenic	not near genes	chr3R	28795442	intergenic	not near genes	chr3R	28798016	intergenic	not near genes	chr3R_6_28795001	chr3R_28795001	RAL-703
1776	chr3R	29406611	29406643	chr3R	29407908	29407913	jockey	6	1298	4.0	2.0	3.0	1.5	1302	chr3R	29406611	intron	Ptp99A +	chr3R	29407262	intron	Ptp99A +	chr3R	29407913	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-703
1787	chr3R	29738258	29738292	chr3R	29739729	29739779	hobo	7	1479	4.0	3.0	3.5	1.6	1521	chr3R	29738258	intergenic	CG1969 +,CG7598 +	chr3R	29739018	intron	CG1969 +	chr3R	29739779	5` UTR	CG1969 +	chr3R_7_29735001	chr3R_29735001	RAL-703
1790	chr3R	29882005	29882042	chr3R	29891182	29891219	roo	7	9175	4.5	5.5	5.0	1.2	9214	chr3R	29882005	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891219	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-703
1793	chr3R	30084846	30084879	chr3R	30086318	30086366	hobo	9	1482	3.0	2.5	2.8	2.4	1520	chr3R	30084846	intron	sima +	chr3R	30085606	intron	sima +	chr3R	30086366	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-703
1796	chr3R	30238764	30238787	chr3R	30239928	30239971	1360	6	1177	1.5	3.0	2.2	1.9	1207	chr3R	30238764	intergenic	not near genes	chr3R	30239368	intergenic	not near genes	chr3R	30239971	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-703
1799	chr3R	30317314	30317358	chr3R	30324923	30324970	roo	8	7607	0.5	3.0	1.8	2.9	7656	chr3R	30317314	intron	hdc +	chr3R	30321142	intron	hdc +	chr3R	30324970	intron	hdc +	chr3R_8_30320001	chr3R_30320001	RAL-703
1803	chr3R	30375529	30375562	chr3R	30383172	30383192	412	6	7640	4.0	4.0	4.0	1.2	7663	chr3R	30375529	intergenic	not near genes	chr3R	30379360	intergenic	not near genes	chr3R	30383192	intergenic	not near genes	chr3R_6_30375001	chr3R_30375001	RAL-703
1804	chr3R	30396200	30396244	chr3R	30404485	30404530	roo	12	8281	5.5	4.5	5.0	2.0	8330	chr3R	30396200	intergenic	not near genes	chr3R	30400365	intergenic	not near genes	chr3R	30404530	5` UTR	CR45570 +	chr3R_12_30400001	chr3R_30400001	RAL-703
1807	chr3R	30480476	30480497	chr3R	30482945	30482985	jockey	12	2481	3.5	7.0	5.2	1.9	2509	chr3R	30480476	intron	PH4alphaEFB +	chr3R	30481730	intron	PH4alphaEFB +	chr3R	30482985	intron	PH4alphaEFB +	chr3R_12_30480001	chr3R_30480001	RAL-703
1814	chr3R	30679508	30679547	chr3R	30686995	30687033	blood	7	7486	2.5	3.0	2.8	1.8	7525	chr3R	30679508	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687033	intergenic	not near genes	chr3R_7_30680001	chr3R_30680001	RAL-703
1816	chr3R	30818792	30818836	chr3R	30820377	30820421	1360	12	1583	3.0	6.0	4.5	2.2	1629	chr3R	30818792	intron	cindr +	chr3R	30819606	intron	cindr +	chr3R	30820421	intron	cindr +	chr3R_12_30815001	chr3R_30815001	RAL-703
1824	chr3R	31074215	31074237	chr3R	31081832	31081836	springer	5	7614	5.5	0.5	3.0	1.2	7621	chr3R	31074215	intron	Sox100B +	chr3R	31078026	intron	Sox100B +	chr3R	31081836	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-703
1828	chr3R	31279367	31279408	chr3R	31285563	31285594	diver	6	6202	1.5	2.0	1.8	2.1	6227	chr3R	31279367	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-703
1841	chr3R	31997981	31998021	chr3R	32005465	32005510	blood	10	7486	1.5	3.0	2.2	3.1	7529	chr3R	31997981	intron	heph -	chr3R	32001746	intron	heph -	chr3R	32005510	intron	heph -	chr3R_10_32000001	chr3R_32000001	RAL-703
1842	chr4	319985	320000	chr4	328181	328190	Stalker2	4	8194	2.5	3.5	3.0	1.0	8205	chr4	319985	3` UTR	CG32850 +	chr4	324088	intron	CG32850 +	chr4	328190	3` UTR	CG32850 +	chr4_4_320001	chr4_320001	RAL-703
1844	chr4	671590	671622	chr4	680190	680224	Tirant	5	8601	1.0	3.0	2.0	1.7	8634	chr4	671590	intron	CG11360 +	chr4	675907	intron	CG11360 +	chr4	680224	intron	CG11360 +	chr4_5_675001	chr4_675001	RAL-703
1846	chrX	428400	428440	chrX	434604	434621	3S18	5	6193	4.5	1.0	2.8	1.3	6221	chrX	428400	intron	CG32816 -	chrX	431510	intron	CG32816 -	chrX	434621	intron	CG32816 -	chrX_5_430001	chrX_430001	RAL-703
1848	chrX	551407	551454	chrX	558986	559026	412	12	7579	3.5	2.0	2.8	3.2	7619	chrX	551407	intron	Appl +	chrX	555216	intron	Appl +	chrX	559026	intron	Appl +	chrX_12_555001	chrX_555001	RAL-703
1851	chrX	827591	827633	chrX	835397	835462	roo	5	7815	1.0	0.5	0.8	2.8	7871	chrX	827591	intron	CG43867 -	chrX	831526	intron	CG43867 -	chrX	835462	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-703
1852	chrX	906685	906725	chrX	908493	908534	S-element	13	1808	2.5	11.0	6.8	1.7	1849	chrX	906685	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908534	intron	CG43867 -	chrX_13_905001	chrX_905001	RAL-703
1854	chrX	1357779	1357809	chrX	1367946	1367957	Doc	6	10176	1.0	3.5	2.2	1.9	10178	chrX	1357779	intergenic	png -	chrX	1362868	intergenic	not near genes	chrX	1367957	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-703
1856	chrX	1518042	1518073	chrX	1523443	1523496	jockey	10	5413	2.0	4.5	3.2	2.4	5454	chrX	1518042	intergenic	inc +	chrX	1520769	intergenic	not near genes	chrX	1523496	intergenic	not near genes	chrX_10_1520001	chrX_1520001	RAL-703
1857	chrX	1930522	1930540	chrX	1938113	1938130	opus	6	7590	2.5	3.5	3.0	1.5	7608	chrX	1930522	intergenic	CG11596 +	chrX	1934326	intergenic	not near genes	chrX	1938130	3` UTR	CG3857 -	chrX_6_1930001	chrX_1930001	RAL-703
1858	chrX	1930542	1930566	chrX	1938112	1938156	opus	7	7585	0.5	3.5	2.0	2.3	7614	chrX	1930542	intergenic	CG11596 +	chrX	1934349	intergenic	not near genes	chrX	1938156	3` UTR	CG3857 -	chrX_7_1930001	chrX_1930001	RAL-703
1866	chrX	2844884	2844927	chrX	2852314	2852317	mdg1	5	7421	1.5	5.5	3.5	1.1	7433	chrX	2844884	intron	kirre +	chrX	2848600	intron	kirre +	chrX	2852317	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-703
1871	chrX	3058003	3058045	chrX	3058263	3058306	pogo	9	259	1.5	2.5	2.0	3.0	303	chrX	3058003	intron	kirre +	chrX	3058154	intron	kirre +	chrX	3058306	intron	kirre +	chrX_9_3055001	chrX_3055001	RAL-703
1876	chrX	3415000	3415046	chrX	3421205	3421251	3S18	5	6201	1.0	2.0	1.5	2.0	6251	chrX	3415000	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421251	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-703
1878	chrX	3493087	3493118	chrX	3502249	3502297	roo	8	9172	2.5	1.0	1.8	2.9	9210	chrX	3493087	intron,intron	CR44999 +,Gas8 -	chrX	3497692	intron,intron	CR44999 +,Gas8 -	chrX	3502297	intron,intron	CR44999 +,Gas8 -	chrX_8_3495001	chrX_3495001	RAL-703
1880	chrX	3597549	3597583	chrX	3619733	3619771	roo	8	22186	3.0	4.0	3.5	1.8	22222	chrX	3597549	intron	AstA-R1 +	chrX	3608660	intron	AstA-R1 +	chrX	3619771	intron	AstA-R1 +	chrX_8_3605001	chrX_3605001	RAL-703
1882	chrX	3842312	3842350	chrX	3842573	3842611	pogo	8	260	1.5	4.5	3.0	2.0	299	chrX	3842312	intron	ec +	chrX	3842462	intron	ec +	chrX	3842611	intron	ec +	chrX_8_3840001	chrX_3840001	RAL-703
1887	chrX	3986843	3986870	chrX	3994496	3994523	412	5	7651	2.5	2.0	2.2	1.6	7680	chrX	3986843	intergenic	not near genes	chrX	3990683	intergenic	not near genes	chrX	3994523	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-703
1890	chrX	4157889	4157913	chrX	4164953	4164986	297	7	7071	2.0	1.5	1.8	2.5	7097	chrX	4157889	intron	Fas2 -	chrX	4161438	intron	Fas2 -	chrX	4164986	intron	Fas2 -	chrX_7_4160001	chrX_4160001	RAL-703
1896	chrX	4700371	4700423	chrX	4700734	4700786	jockey	7	362	2.5	1.5	2.0	2.3	415	chrX	4700371	3` UTR	ctp +	chrX	4700578	3` UTR	ctp +	chrX	4700786	3` UTR	ctp +	chrX_7_4700001	chrX_4700001	RAL-703
1898	chrX	4731797	4731814	chrX	4736910	4736910	jockey	5	5108	4.0	3.0	3.5	1.1	5113	chrX	4731797	intergenic	not near genes	chrX	4734354	intergenic	not near genes	chrX	4736910	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-703
1899	chrX	4763245	4763279	chrX	4763753	4763782	Stalker4	9	504	1.0	1.5	1.2	4.1	537	chrX	4763245	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763782	intergenic	not near genes	chrX_9_4760001	chrX_4760001	RAL-703
1901	chrX	4792358	4792401	chrX	4792811	4792854	jockey	6	452	2.0	3.5	2.8	1.6	496	chrX	4792358	intergenic	not near genes	chrX	4792606	intergenic	not near genes	chrX	4792854	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-703
1904	chrX	4990033	4990072	chrX	4997267	4997306	roo	6	7234	1.0	2.0	1.5	2.4	7273	chrX	4990033	intron	CR44833 -	chrX	4993670	intron	CR44833 -	chrX	4997306	intron	CR44833 -	chrX_6_4990001	chrX_4990001	RAL-703
1906	chrX	5096271	5096305	chrX	5103840	5103858	springer	9	7573	1.5	2.5	2.0	3.0	7587	chrX	5096271	intron,intron	CG15465 +,rg +	chrX	5100064	intron,intron	CG15465 +,rg +	chrX	5103858	intron,intron	CG15465 +,rg +	chrX_9_5100001	chrX_5100001	RAL-703
1908	chrX	5338689	5338731	chrX	5339962	5339971	jockey	6	1266	2.5	1.5	2.0	2.0	1282	chrX	5338689	intergenic	not near genes	chrX	5339330	intergenic	not near genes	chrX	5339971	intergenic	SK +	chrX_6_5335001	chrX_5335001	RAL-703
1910	chrX	5524833	5524855	chrX	5528716	5528737	412	4	3882	4.0	0.5	2.2	1.2	3904	chrX	5524833	intergenic	snoRNA:Psi28S-3342 -	chrX	5526785	intergenic	not near genes	chrX	5528737	intergenic	Vsx2 -	chrX_4_5525001	chrX_5525001	RAL-703
1912	chrX	5883814	5883837	chrX	5884063	5884077	pogo	5	254	1.0	2.5	1.8	1.8	263	chrX	5883814	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884077	intron	CR45668 -	chrX_5_5880001	chrX_5880001	RAL-703
1913	chrX	5884152	5884187	chrX	5884411	5884447	pogo	8	260	2.0	0.5	1.2	3.6	295	chrX	5884152	intron	CR45668 -	chrX	5884300	intron	CR45668 -	chrX	5884447	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-703
1917	chrX	6171581	6171597	chrX	6179032	6179047	Quasimodo	7	7450	3.5	4.0	3.8	1.5	7466	chrX	6171581	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179047	intron	Ca-alpha1T -	chrX_7_6175001	chrX_6175001	RAL-703
1918	chrX	6171599	6171612	chrX	6179030	6179065	Quasimodo	8	7443	1.5	4.0	2.8	2.1	7466	chrX	6171599	intron	Ca-alpha1T -	chrX	6175332	intron	Ca-alpha1T -	chrX	6179065	intron	Ca-alpha1T -	chrX_8_6175001	chrX_6175001	RAL-703
1919	chrX	6335223	6335237	chrX	6337735	6337753	Tirant	4	2522	0.5	3.0	1.8	1.4	2530	chrX	6335223	intergenic	not near genes	chrX	6336488	intergenic	not near genes	chrX	6337753	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-703
1923	chrX	6392853	6392898	chrX	6397637	6397674	Doc	8	4780	1.5	2.5	2.0	2.7	4821	chrX	6392853	intergenic	not near genes	chrX	6395264	intergenic	not near genes	chrX	6397674	intergenic	not near genes	chrX_8_6395001	chrX_6395001	RAL-703
1925	chrX	6562802	6562819	chrX	6571302	6571320	Tirant	4	8499	7.0	4.5	5.8	0.6	8518	chrX	6562802	intron	CG34417 +	chrX	6567061	intron	CG34417 +	chrX	6571320	intron	CG34417 +	chrX_4_6565001	chrX_6565001	RAL-703
1926	chrX	6562821	6562847	chrX	6571301	6571349	Tirant	5	8497	4.0	4.5	4.2	1.0	8528	chrX	6562821	intron	CG34417 +	chrX	6567085	intron	CG34417 +	chrX	6571349	intron	CG34417 +	chrX_5_6565001	chrX_6565001	RAL-703
1932	chrX	7023592	7023631	chrX	7031002	7031036	Tabor	7	7409	5.0	5.0	5.0	1.2	7444	chrX	7023592	intron	CG12541 -	chrX	7027314	intron	CG12541 -	chrX	7031036	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-703
1933	chrX	7125230	7125275	chrX	7134409	7134454	roo	8	9179	1.5	3.5	2.5	2.3	9224	chrX	7125230	intergenic	not near genes	chrX	7129842	intergenic	not near genes	chrX	7134454	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-703
1937	chrX	7702895	7702918	chrX	7703352	7703376	jockey	5	455	2.5	2.5	2.5	1.4	481	chrX	7702895	intron	CHES-1-like -	chrX	7703136	intron	CHES-1-like -	chrX	7703376	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-703
1938	chrX	7845718	7845755	chrX	7847229	7847261	hopper2	6	1510	2.5	5.5	4.0	1.2	1543	chrX	7845718	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847261	intergenic	not near genes	chrX_6_7845001	chrX_7845001	RAL-703
1939	chrX	8031410	8031441	chrX	8035738	8035770	Juan	6	4328	7.0	3.0	5.0	1.0	4360	chrX	8031410	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035770	3` UTR	CG2233 -	chrX_6_8030001	chrX_8030001	RAL-703
1945	chrX	8922344	8922358	chrX	8922779	8922804	jockey	9	448	4.0	4.0	4.0	1.8	460	chrX	8922344	intron	rdgA +	chrX	8922574	intron	rdgA +	chrX	8922804	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-703
1946	chrX	8948754	8948785	chrX	8956271	8956315	roo	4	7527	2.0	3.0	2.5	1.1	7561	chrX	8948754	intron	rdgA +	chrX	8952534	intron	rdgA +	chrX	8956315	intron	rdgA +	chrX_4_8950001	chrX_8950001	RAL-703
1949	chrX	9508124	9508161	chrX	9509662	9509694	jockey	9	1533	3.0	2.5	2.8	2.4	1570	chrX	9508124	intron	CG32700 -	chrX	9508909	intron	CG32700 -	chrX	9509694	intron	CG32700 -	chrX_9_9505001	chrX_9505001	RAL-703
1950	chrX	9575777	9575822	chrX	9576119	9576165	mdg3	8	331	2.0	7.0	4.5	1.5	388	chrX	9575777	intron,exon	CG32699 -,CG42395 -	chrX	9575971	intron,intron	CG32699 -,CG42395 -	chrX	9576165	intron,5` UTR	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-703
1962	chrX	10550840	10550883	chrX	10552327	10552354	hobo	7	1478	2.5	3.0	2.8	1.8	1514	chrX	10550840	intron	spri -	chrX	10551597	intron	spri -	chrX	10552354	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-703
1963	chrX	10686043	10686081	chrX	10691192	10691238	roo	5	5155	3.5	2.0	2.8	1.3	5195	chrX	10686043	intron	X11Lbeta +	chrX	10688640	intron	X11Lbeta +	chrX	10691238	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-703
1969	chrX	11312040	11312081	chrX	11319412	11319454	Stalker2	4	7368	3.0	3.0	3.0	1.0	7414	chrX	11312040	intergenic	not near genes	chrX	11315747	intergenic	not near genes	chrX	11319454	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-703
1970	chrX	11312082	11312094	chrX	11319410	11319434	Stalker2	6	7350	1.5	3.0	2.2	1.9	7352	chrX	11312082	intergenic	not near genes	chrX	11315758	intergenic	not near genes	chrX	11319434	intergenic	not near genes	chrX_6_11315001	chrX_11315001	RAL-703
1973	chrX	11633412	11633445	chrX	11640486	11640508	297	8	7071	5.0	4.5	4.8	1.4	7096	chrX	11633412	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640508	intron	Ptp10D +	chrX_8_11635001	chrX_11635001	RAL-703
1976	chrX	12168130	12168161	chrX	12173578	12173592	I-element	4	5448	0.5	2.5	1.5	1.6	5462	chrX	12168130	intron	Ten-a +	chrX	12170861	intron	Ten-a +	chrX	12173592	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-703
1978	chrX	12301959	12301984	chrX	12303269	12303295	X-element	4	1317	1.0	2.0	1.5	1.6	1336	chrX	12301959	intron	Ten-a +	chrX	12302627	intron	Ten-a +	chrX	12303295	intron	Ten-a +	chrX_4_12300001	chrX_12300001	RAL-703
1990	chrX	13429469	13429495	chrX	13430631	13430646	jockey	7	1161	0.0	0.0	0.0	7.0	1177	chrX	13429469	intergenic	not near genes	chrX	13430058	intergenic	not near genes	chrX	13430646	intergenic	not near genes	chrX_7_13430001	chrX_13430001	RAL-703
1991	chrX	13463629	13463658	chrX	13469226	13469255	mdg3	7	5595	4.5	2.0	3.2	1.7	5626	chrX	13463629	intron	Neto +	chrX	13466442	intron	Neto +	chrX	13469255	intron	Neto +	chrX_7_13465001	chrX_13465001	RAL-703
1995	chrX	14105012	14105054	chrX	14114180	14114204	roo	10	9165	3.0	4.5	3.8	2.1	9192	chrX	14105012	intergenic	not near genes	chrX	14109608	intergenic	not near genes	chrX	14114204	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	RAL-703
2001	chrX	14636451	14636491	chrX	14641910	14641933	I-element	9	5453	0.5	1.5	1.0	4.5	5482	chrX	14636451	intron	NetA -	chrX	14639192	intron	NetA -	chrX	14641933	intron	NetA -	chrX_9_14635001	chrX_14635001	RAL-703
2003	chrX	14778020	14778050	chrX	14782836	14782867	Doc	8	4816	4.0	4.5	4.2	1.5	4847	chrX	14778020	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782867	intergenic	Ag5r2 -	chrX_8_14780001	chrX_14780001	RAL-703
2004	chrX	14818761	14818794	chrX	14823969	14824013	copia	4	5213	1.0	1.0	1.0	2.0	5252	chrX	14818761	intron	rut -	chrX	14821387	intron	rut -	chrX	14824013	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-703
2007	chrX	14936845	14936892	chrX	14946121	14946168	roo	11	9274	1.5	2.5	2.0	3.7	9323	chrX	14936845	intron	pdgy -	chrX	14941506	intron	pdgy -	chrX	14946168	intron	pdgy -	chrX_11_14940001	chrX_14940001	RAL-703
2009	chrX	15273711	15273734	chrX	15274868	15274906	1360	7	1165	2.0	4.5	3.2	1.7	1195	chrX	15273711	intergenic	not near genes	chrX	15274308	intergenic	not near genes	chrX	15274906	intergenic	not near genes	chrX_7_15270001	chrX_15270001	RAL-703
2010	chrX	15421912	15421922	chrX	15423443	15423443	pogo	4	1528	0.5	3.0	1.8	1.4	1531	chrX	15421912	intron	Cngl -	chrX	15422678	intron	Cngl -	chrX	15423443	intron	Cngl -	chrX_4_15420001	chrX_15420001	RAL-703
2016	chrX	16492639	16492674	chrX	16498236	16498259	mdg3	6	5592	5.0	5.5	5.2	1.0	5620	chrX	16492639	intron	para -	chrX	16495449	intron	para -	chrX	16498259	intron	para -	chrX_6_16495001	chrX_16495001	RAL-703
2019	chrX	16936003	16936033	chrX	16936441	16936458	jockey	5	435	0.5	4.0	2.2	1.6	455	chrX	16936003	intron	CG4928 +	chrX	16936230	intron	CG4928 +	chrX	16936458	intron	CG4928 +	chrX_5_16935001	chrX_16935001	RAL-703
2022	chrX	17057933	17057964	chrX	17058194	17058224	pogo	4	260	0.0	2.5	1.2	1.8	291	chrX	17057933	intron	CG45002 -	chrX	17058078	intron	CG45002 -	chrX	17058224	intron	CG45002 -	chrX_4_17055001	chrX_17055001	RAL-703
2025	chrX	17195186	17195231	chrX	17200292	17200307	flea	9	5100	0.5	3.0	1.8	3.2	5121	chrX	17195186	3` UTR	baz +	chrX	17197746	3` UTR	baz +	chrX	17200307	3` UTR	baz +	chrX_9_17195001	chrX_17195001	RAL-703
2032	chrX	17792938	17792980	chrX	17796256	17796298	flea	7	3316	0.0	1.5	0.8	3.9	3360	chrX	17792938	intron	OdsH +	chrX	17794618	intron	OdsH +	chrX	17796298	intron	OdsH +	chrX_7_17790001	chrX_17790001	RAL-703
2036	chrX	18555365	18555371	chrX	18556899	18556913	transib2	4	1540	5.5	0.0	2.8	1.1	1548	chrX	18555365	intron	Bx +	chrX	18556139	intron	Bx +	chrX	18556913	intron	Bx +	chrX_4_18555001	chrX_18555001	RAL-703
2040	chrX	18957057	18957100	chrX	18965738	18965783	roo	8	8679	3.0	2.5	2.8	2.1	8726	chrX	18957057	intron	CG43759 +	chrX	18961420	intron	CG43759 +	chrX	18965783	intron	CG43759 +	chrX_8_18960001	chrX_18960001	RAL-703
2042	chrX	19060393	19060435	chrX	19065196	19065239	Doc	8	4798	4.0	3.5	3.8	1.7	4846	chrX	19060393	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065239	intron	CG14190 +	chrX_8_19060001	chrX_19060001	RAL-703
2047	chrX	19136532	19136583	chrX	19143472	19143522	412	7	6933	0.5	1.0	0.8	3.9	6990	chrX	19136532	intergenic	not near genes	chrX	19140027	intergenic	not near genes	chrX	19143522	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	RAL-703
2049	chrX	19356979	19357023	chrX	19358440	19358502	NOF	4	1464	2.0	0.0	1.0	2.0	1523	chrX	19356979	intron	kek5 +	chrX	19357740	intron	kek5 +	chrX	19358502	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-703
2050	chrX	19380143	19380181	chrX	19380404	19380425	pogo	6	256	4.5	2.5	3.5	1.3	282	chrX	19380143	intron	kek5 +	chrX	19380284	intron	kek5 +	chrX	19380425	intron	kek5 +	chrX_6_19380001	chrX_19380001	RAL-703
2054	chrX	19797314	19797340	chrX	19804661	19804676	Stalker4	4	7344	3.5	2.5	3.0	1.0	7362	chrX	19797314	intergenic	not near genes	chrX	19800995	intergenic	not near genes	chrX	19804676	intergenic	not near genes	chrX_4_19800001	chrX_19800001	RAL-703
2066	chrX	20377325	20377349	chrX	20378812	20378816	hobo	5	1483	4.0	3.5	3.8	1.0	1491	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-703
2070	chrX	20504120	20504153	chrX	20505660	20505694	transib2	7	1538	4.0	5.5	4.8	1.2	1574	chrX	20504120	intron	RhoGAP19D -	chrX	20504907	intron	RhoGAP19D -	chrX	20505694	intron	RhoGAP19D -	chrX_7_20500001	chrX_20500001	RAL-703
2076	chrX	20940719	20940740	chrX	20942190	20942202	hobo	4	1478	3.0	2.0	2.5	1.1	1483	chrX	20940719	intergenic	not near genes	chrX	20941460	intergenic	not near genes	chrX	20942202	intergenic	not near genes	chrX_4_20940001	chrX_20940001	RAL-703
2092	chrX	22564562	22564579	chrX	22575121	22575131	jockey	4	10554	12.0	4.0	8.0	0.4	10569	chrX	22564562	intergenic	not near genes	chrX	22569846	intergenic	not near genes	chrX	22575131	intergenic	not near genes	chrX_4_22565001	chrX_22565001	RAL-703
2093	chrX	22697479	22697513	chrX	22701796	22701830	Juan	6	4314	3.5	4.5	4.0	1.2	4351	chrX	22697479	intron	CR44997 +	chrX	22699654	intron	CR44997 +	chrX	22701830	intron	CR44997 +	chrX_6_22695001	chrX_22695001	RAL-703
2097	chrX	22996291	22996333	chrX	23003545	23003587	roo	9	7253	3.0	1.5	2.2	2.8	7296	chrX	22996291	intron,intron	stnA -,stnB -	chrX	22999939	intron,intron	stnA -,stnB -	chrX	23003587	intron,intron	stnA -,stnB -	chrX_9_22995001	chrX_22995001	RAL-703