SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47450 47484 chr2L 52574 52582 jockey 11 5120 2.5 4.5 3.5 2.4 5132 chr2L 47450 intron Cda5 - chr2L 50016 intron Cda5 - chr2L 52582 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-703 2 chr2L 243900 243910 chr2L 244490 244534 6 597 19.0 21.0 20.0 0.3 634 chr2L 243900 intron kis - chr2L 244217 intron kis - chr2L 244534 intron kis - chr2L_6_240001 chr2L_240001 RAL-703 3 chr2L 263289 263315 chr2L 263455 263463 4 161 6.5 9.5 8.0 0.4 174 chr2L 263289 intron,3` UTR CG3645 -,CG17075 - chr2L 263376 intron,3` UTR CG3645 -,CG17075 - chr2L 263463 intron,3` UTR CG3645 -,CG17075 - chr2L_4_260001 chr2L_260001 RAL-703 4 chr2L 263067 263101 chr2L 267669 267708 10 4603 22.5 26.5 24.5 0.4 4641 chr2L 263067 intron,3` UTR CG3645 -,CG17075 - chr2L 265388 intron,exon CG3645 -,CG17075 - chr2L 267708 intron CG3645 - chr2L_10_265001 chr2L_265001 RAL-703 5 chr2L 347878 347903 chr2L 355394 355423 blood 6 7519 1.5 3.5 2.5 1.7 7545 chr2L 347878 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355423 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-703 6 chr2L 371436 371446 chr2L 371534 371545 4 98 4.5 3.5 4.0 0.8 109 chr2L 371436 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371545 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-703 7 chr2L 407939 407968 chr2L 408040 408061 6 99 3.0 5.0 4.0 1.2 122 chr2L 407939 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408061 3` UTR AP-2alpha - chr2L_6_405001 chr2L_405001 RAL-703 8 chr2L 593469 593512 chr2L 593569 593611 7 95 2.5 1.5 2.0 2.3 142 chr2L 593469 intron Gsc - chr2L 593540 intron Gsc - chr2L 593611 exon Gsc - chr2L_7_590001 chr2L_590001 RAL-703 9 chr2L 630313 630334 chr2L 630408 630426 6 97 2.5 0.0 1.2 2.7 113 chr2L 630313 intergenic not near genes chr2L 630370 intergenic not near genes chr2L 630426 intergenic not near genes chr2L_6_630001 chr2L_630001 RAL-703 10 chr2L 764546 764586 chr2L 764647 764676 9 98 4.0 2.0 3.0 2.2 130 chr2L 764546 intergenic not near genes chr2L 764611 intergenic not near genes chr2L 764676 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-703 11 chr2L 770474 770487 chr2L 772250 772283 Bari1 4 1794 4.0 5.5 4.8 0.7 1809 chr2L 770474 intergenic not near genes chr2L 771378 intergenic not near genes chr2L 772283 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-703 12 chr2L 791440 791467 chr2L 791554 791581 5 114 4.0 2.5 3.2 1.2 141 chr2L 791440 intergenic not near genes chr2L 791510 intergenic not near genes chr2L 791581 intergenic not near genes chr2L_5_790001 chr2L_790001 RAL-703 13 chr2L 795909 795953 chr2L 796071 796088 4 153 2.5 2.5 2.5 1.1 179 chr2L 795909 intergenic not near genes chr2L 795998 intergenic not near genes chr2L 796088 intergenic not near genes chr2L_4_795001 chr2L_795001 RAL-703 14 chr2L 802469 802503 chr2L 802808 802843 5 338 4.0 2.5 3.2 1.2 374 chr2L 802469 intergenic not near genes chr2L 802656 intergenic not near genes chr2L 802843 intergenic not near genes chr2L_5_800001 chr2L_800001 RAL-703 15 chr2L 849460 849481 chr2L 849560 849590 4 107 3.0 4.0 3.5 0.9 130 chr2L 849460 intron drongo - chr2L 849525 intron drongo - chr2L 849590 intron drongo - chr2L_4_845001 chr2L_845001 RAL-703 16 chr2L 877827 877836 chr2L 877928 877936 6 100 10.5 3.5 7.0 0.8 109 chr2L 877827 3` UTR,exon CG15824 -,ninaA + chr2L 877882 3` UTR,intron CG15824 -,ninaA + chr2L 877936 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-703 17 chr2L 892414 892428 chr2L 892533 892562 6 128 2.5 3.5 3.0 1.5 148 chr2L 892414 intergenic not near genes chr2L 892488 intergenic not near genes chr2L 892562 intergenic not near genes chr2L_6_890001 chr2L_890001 RAL-703 18 chr2L 908375 908406 chr2L 908461 908473 6 81 3.0 5.0 4.0 1.2 98 chr2L 908375 intergenic not near genes chr2L 908424 intergenic not near genes chr2L 908473 intergenic not near genes chr2L_6_905001 chr2L_905001 RAL-703 19 chr2L 908784 908799 chr2L 908885 908898 6 101 2.0 1.0 1.5 2.4 114 chr2L 908784 intergenic not near genes chr2L 908841 intergenic not near genes chr2L 908898 intergenic not near genes chr2L_6_905001 chr2L_905001 RAL-703 20 chr2L 922458 922494 chr2L 922549 922594 8 95 2.0 2.5 2.2 2.5 136 chr2L 922458 intergenic CG4341 + chr2L 922526 intergenic CG4341 + chr2L 922594 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-703 21 chr2L 931620 931665 chr2L 931719 931759 6 98 3.0 3.5 3.2 1.4 139 chr2L 931620 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931759 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-703 22 chr2L 964536 964574 chr2L 964640 964656 9 100 3.5 3.5 3.5 2.0 120 chr2L 964536 intergenic not near genes chr2L 964596 intergenic not near genes chr2L 964656 intergenic not near genes chr2L_9_960001 chr2L_960001 RAL-703 23 chr2L 976859 976885 chr2L 984515 984530 roo 6 7654 5.0 0.5 2.8 1.6 7671 chr2L 976859 intergenic not near genes chr2L 980694 intergenic not near genes chr2L 984530 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-703 24 chr2L 996707 996748 chr2L 1005822 1005863 roo 4 9115 0.0 5.0 2.5 1.1 9156 chr2L 996707 intergenic not near genes chr2L 1001285 intergenic not near genes chr2L 1005863 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-703 25 chr2L 1006801 1006853 chr2L 1006923 1006965 6 114 1.0 0.0 0.5 4.0 164 chr2L 1006801 intergenic not near genes chr2L 1006883 intergenic not near genes chr2L 1006965 intergenic not near genes chr2L_6_1005001 chr2L_1005001 RAL-703 26 chr2L 1126685 1126705 chr2L 1126748 1126801 6 88 2.5 1.5 2.0 2.0 116 chr2L 1126685 intron Pino - chr2L 1126743 intron Pino - chr2L 1126801 intron Pino - chr2L_6_1125001 chr2L_1125001 RAL-703 27 chr2L 1133163 1133205 chr2L 1133296 1133320 16 126 3.5 2.5 3.0 4.0 157 chr2L 1133163 exon Iris - chr2L 1133242 exon Iris - chr2L 1133320 exon Iris - chr2L_16_1130001 chr2L_1130001 RAL-703 28 chr2L 1156843 1156893 chr2L 1156968 1157013 8 124 3.5 6.0 4.8 1.4 170 chr2L 1156843 intron capt - chr2L 1156928 intron capt - chr2L 1157013 intron capt - chr2L_8_1155001 chr2L_1155001 RAL-703 29 chr2L 1220117 1220160 chr2L 1227593 1227646 blood 10 7476 2.5 2.5 2.5 2.9 7529 chr2L 1220117 intron CG42329 + chr2L 1223882 intron CG42329 + chr2L 1227646 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-703 30 chr2L 1261148 1261259 chr2L 1261232 1261341 7 93 0.0 0.0 0.0 7.0 193 chr2L 1261148 intron robo3 + chr2L 1261244 intron robo3 + chr2L 1261341 intron robo3 + chr2L_7_1260001 chr2L_1260001 RAL-703 31 chr2L 1292340 1292368 chr2L 1292629 1292660 6 294 2.0 4.0 3.0 1.5 320 chr2L 1292340 intron robo3 + chr2L 1292500 intron robo3 + chr2L 1292660 exon robo3 + chr2L_6_1290001 chr2L_1290001 RAL-703 32 chr2L 1301761 1301775 chr2L 1302320 1302334 gypsy 5 559 3.5 2.5 3.0 1.2 573 chr2L 1301761 intergenic not near genes chr2L 1302048 intergenic not near genes chr2L 1302334 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-703 33 chr2L 1336920 1336952 chr2L 1337182 1337214 7 261 2.0 5.5 3.8 1.5 294 chr2L 1336920 intergenic not near genes chr2L 1337067 intergenic not near genes chr2L 1337214 intergenic not near genes chr2L_7_1335001 chr2L_1335001 RAL-703 34 chr2L 1348830 1348875 chr2L 1348934 1348980 11 103 4.5 4.5 4.5 2.0 150 chr2L 1348830 intergenic not near genes chr2L 1348905 intergenic not near genes chr2L 1348980 intergenic not near genes chr2L_11_1345001 chr2L_1345001 RAL-703 35 chr2L 1427815 1427841 chr2L 1427912 1427942 9 100 2.5 3.5 3.0 2.2 127 chr2L 1427815 intergenic not near genes chr2L 1427878 intergenic not near genes chr2L 1427942 intergenic not near genes chr2L_9_1425001 chr2L_1425001 RAL-703 36 chr2L 1557128 1557171 chr2L 1557273 1557315 9 143 1.5 2.0 1.8 3.2 187 chr2L 1557128 intron haf + chr2L 1557222 intron haf + chr2L 1557315 intron haf + chr2L_9_1555001 chr2L_1555001 RAL-703 37 chr2L 1570685 1570713 chr2L 1573561 1573605 F-element 8 2889 2.5 3.5 3.0 2.0 2920 chr2L 1570685 intron haf + chr2L 1572145 intron haf + chr2L 1573605 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-703 38 chr2L 1622472 1622479 chr2L 1622825 1622836 4 356 3.5 1.5 2.5 1.1 364 chr2L 1622472 3` UTR CR44603 - chr2L 1622654 3` UTR CR44603 - chr2L 1622836 3` UTR CR44603 - chr2L_4_1620001 chr2L_1620001 RAL-703 39 chr2L 1678963 1679002 chr2L 1686447 1686487 blood 7 7481 3.5 3.0 3.2 1.7 7524 chr2L 1678963 intron chinmo + chr2L 1682725 intron chinmo + chr2L 1686487 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-703 40 chr2L 1699255 1699289 chr2L 1699340 1699392 11 96 3.0 3.0 3.0 2.8 137 chr2L 1699255 3` UTR chinmo + chr2L 1699324 3` UTR chinmo + chr2L 1699392 3` UTR chinmo + chr2L_11_1695001 chr2L_1695001 RAL-703 41 chr2L 1711345 1711372 chr2L 1711678 1711713 mdg3 8 340 5.0 3.0 4.0 1.6 368 chr2L 1711345 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711529 3` UTR frtz - chr2L 1711713 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-703 42 chr2L 1825230 1825278 chr2L 1825410 1825433 11 178 1.0 1.5 1.2 5.0 203 chr2L 1825230 exon CG31664 - chr2L 1825332 exon CG31664 - chr2L 1825433 exon CG31664 - chr2L_11_1825001 chr2L_1825001 RAL-703 43 chr2L 1883397 1883447 chr2L 1883999 1884047 6 600 1.0 2.0 1.5 2.4 650 chr2L 1883397 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884047 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-703 44 chr2L 2100379 2100408 chr2L 2109545 2109553 roo 6 9156 3.0 3.0 3.0 1.5 9174 chr2L 2100379 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109553 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-703 45 chr2L 2294040 2294066 chr2L 2299247 2299281 copia 4 5212 2.5 3.0 2.8 1.1 5241 chr2L 2294040 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299281 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-703 46 chr2L 2317109 2317127 chr2L 2317300 2317318 5 187 12.5 18.0 15.2 0.3 209 chr2L 2317109 intron,intron CG9967 -,eys + chr2L 2317214 intron,intron CG9967 -,eys + chr2L 2317318 intron,intron CG9967 -,eys + chr2L_5_2315001 chr2L_2315001 RAL-703 47 chr2L 2318886 2318904 chr2L 2318965 2318989 4 80 3.0 3.5 3.2 1.0 103 chr2L 2318886 intron,intron CG9967 -,eys + chr2L 2318938 intron,intron CG9967 -,eys + chr2L 2318989 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-703 48 chr2L 2427357 2427387 chr2L 2427463 2427490 9 101 6.0 1.5 3.8 1.9 133 chr2L 2427357 3` UTR CR44912 - chr2L 2427424 3` UTR CR44912 - chr2L 2427490 3` UTR CR44912 - chr2L_9_2425001 chr2L_2425001 RAL-703 49 chr2L 2439259 2439280 chr2L 2439348 2439377 6 94 4.5 9.0 6.8 0.8 118 chr2L 2439259 intron dpp + chr2L 2439318 intron dpp + chr2L 2439377 intron dpp + chr2L_6_2435001 chr2L_2435001 RAL-703 50 chr2L 2565538 2565560 chr2L 2571631 2571653 297 6 6090 1.5 7.0 4.2 1.2 6115 chr2L 2565538 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571653 exon Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-703 51 chr2L 2587797 2587848 chr2L 2587896 2587939 18 88 2.0 3.5 2.8 4.7 142 chr2L 2587797 intergenic not near genes chr2L 2587868 intergenic not near genes chr2L 2587939 intergenic not near genes chr2L_18_2585001 chr2L_2585001 RAL-703 52 chr2L 2661210 2661228 chr2L 2663043 2663085 I-element 7 1845 2.0 5.5 3.8 1.5 1875 chr2L 2661210 intergenic not near genes chr2L 2662148 intergenic not near genes chr2L 2663085 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-703 53 chr2L 2698848 2698894 chr2L 2698954 2699001 7 103 0.5 2.5 1.5 2.8 153 chr2L 2698848 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2699001 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-703 54 chr2L 2713507 2713543 chr2L 2713613 2713661 7 109 3.0 2.5 2.8 1.8 154 chr2L 2713507 intron CG31690 + chr2L 2713584 intron CG31690 + chr2L 2713661 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-703 55 chr2L 2772601 2772627 chr2L 2779203 2779231 297 5 6603 2.0 4.0 3.0 1.2 6630 chr2L 2772601 3` UTR Syt1 - chr2L 2775916 intron Syt1 - chr2L 2779231 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-703 56 chr2L 2885357 2885396 chr2L 2885453 2885477 7 92 3.0 3.0 3.0 1.8 120 chr2L 2885357 intron NTPase - chr2L 2885417 intron NTPase - chr2L 2885477 intron NTPase - chr2L_7_2885001 chr2L_2885001 RAL-703 57 chr2L 2933306 2933331 chr2L 2935488 2935511 pogo 10 2189 3.0 2.5 2.8 2.6 2205 chr2L 2933306 intron lilli + chr2L 2934408 intron lilli + chr2L 2935511 intron lilli + chr2L_10_2930001 chr2L_2930001 RAL-703 58 chr2L 2937409 2937421 chr2L 2937505 2937517 4 96 6.5 2.5 4.5 0.7 108 chr2L 2937409 intron lilli + chr2L 2937463 intron lilli + chr2L 2937517 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-703 59 chr2L 2937422 2937439 chr2L 2937503 2937530 6 91 3.5 2.5 3.0 1.5 108 chr2L 2937422 intron lilli + chr2L 2937476 intron lilli + chr2L 2937530 intron lilli + chr2L_6_2935001 chr2L_2935001 RAL-703 60 chr2L 3072998 3073026 chr2L 3078238 3078268 copia 9 5241 2.5 4.0 3.2 2.1 5270 chr2L 3072998 intron toc - chr2L 3075633 intron toc - chr2L 3078268 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-703 61 chr2L 3108848 3108875 chr2L 3108945 3108972 7 97 8.0 1.0 4.5 1.3 124 chr2L 3108848 exon toc - chr2L 3108910 intron toc - chr2L 3108972 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-703 62 chr2L 3109395 3109427 chr2L 3109481 3109525 4 95 0.5 3.0 1.8 1.4 130 chr2L 3109395 intron toc - chr2L 3109460 intron toc - chr2L 3109525 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-703 63 chr2L 3193825 3193850 chr2L 3193930 3193956 5 106 7.0 4.0 5.5 0.8 131 chr2L 3193825 intron CG34393 - chr2L 3193890 intron CG34393 - chr2L 3193956 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-703 64 chr2L 3202720 3202771 chr2L 3210169 3210220 mdg1 7 7447 0.0 2.5 1.2 3.2 7500 chr2L 3202720 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210220 intergenic CR45336 + chr2L_7_3205001 chr2L_3205001 RAL-703 65 chr2L 3251480 3251523 chr2L 3259059 3259106 springer 5 7579 0.5 3.5 2.0 1.7 7626 chr2L 3251480 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259106 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-703 66 chr2L 3291219 3291267 chr2L 3291319 3291366 12 96 2.5 4.0 3.2 2.9 147 chr2L 3291219 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291366 3` UTR CG9664 - chr2L_12_3290001 chr2L_3290001 RAL-703 67 chr2L 3388578 3388612 chr2L 3388839 3388872 pogo 8 257 4.5 2.0 3.2 1.9 294 chr2L 3388578 intergenic CG42460 - chr2L 3388725 intergenic CG42460 - chr2L 3388872 intergenic CG42460 -,CR44791 + chr2L_8_3385001 chr2L_3385001 RAL-703 68 chr2L 3508332 3508370 chr2L 3508430 3508461 9 95 4.5 1.0 2.8 2.4 129 chr2L 3508332 intergenic tim -,CR45299 + chr2L 3508396 intergenic CR45299 +,tim - chr2L 3508461 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-703 69 chr2L 3561229 3561269 chr2L 3561327 3561356 7 97 5.5 3.0 4.2 1.3 127 chr2L 3561229 intergenic not near genes chr2L 3561292 intergenic not near genes chr2L 3561356 intergenic not near genes chr2L_7_3560001 chr2L_3560001 RAL-703 70 chr2L 3584656 3584698 chr2L 3584753 3584795 4 94 2.5 1.0 1.8 1.4 139 chr2L 3584656 intergenic not near genes chr2L 3584726 intergenic not near genes chr2L 3584795 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-703 71 chr2L 3627867 3627911 chr2L 3627975 3628016 6 107 2.5 1.5 2.0 2.0 149 chr2L 3627867 intron for - chr2L 3627942 intron for - chr2L 3628016 intron for - chr2L_6_3625001 chr2L_3625001 RAL-703 72 chr2L 3634106 3634135 chr2L 3634208 3634236 9 100 2.5 5.5 4.0 1.8 130 chr2L 3634106 intron for - chr2L 3634171 intron for - chr2L 3634236 intron for - chr2L_9_3630001 chr2L_3630001 RAL-703 73 chr2L 3649772 3649805 chr2L 3654994 3655027 copia 6 5222 2.5 0.5 1.5 2.4 5255 chr2L 3649772 intron for - chr2L 3652400 intron for - chr2L 3655027 intron for - chr2L_6_3650001 chr2L_3650001 RAL-703 74 chr2L 3659183 3659205 chr2L 3659440 3659462 4 256 3.5 4.0 3.8 0.8 279 chr2L 3659183 intergenic not near genes chr2L 3659322 intergenic not near genes chr2L 3659462 intergenic not near genes chr2L_4_3655001 chr2L_3655001 RAL-703 75 chr2L 3673269 3673312 chr2L 3673388 3673430 8 114 1.0 3.5 2.2 2.5 161 chr2L 3673269 exon CG34340 + chr2L 3673350 intron CG34340 + chr2L 3673430 intron CG34340 + chr2L_8_3670001 chr2L_3670001 RAL-703 76 chr2L 3784700 3784720 chr2L 3785616 3785637 5 916 23.0 16.0 19.5 0.2 937 chr2L 3784700 intergenic CG31960 + chr2L 3785168 exon CG31960 + chr2L 3785637 intergenic CG31960 +,CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-703 77 chr2L 3819029 3819046 chr2L 3819129 3819147 6 101 4.0 0.0 2.0 2.0 118 chr2L 3819029 intergenic CR44077 + chr2L 3819088 intergenic not near genes chr2L 3819147 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-703 78 chr2L 3862407 3862523 chr2L 3862511 3862630 8 101 0.0 0.0 0.0 8.0 223 chr2L 3862407 intergenic CG3964 +,CR44078 - chr2L 3862518 intergenic CG3964 +,CR44078 - chr2L 3862630 intergenic CG3964 + chr2L_8_3860001 chr2L_3860001 RAL-703 79 chr2L 3891875 3891922 chr2L 3891979 3892005 15 100 2.5 2.5 2.5 4.3 130 chr2L 3891875 intron capu - chr2L 3891940 intron capu - chr2L 3892005 intron capu - chr2L_15_3890001 chr2L_3890001 RAL-703 80 chr2L 3960541 3960595 chr2L 3960731 3960785 8 184 4.0 1.5 2.8 2.1 244 chr2L 3960541 intron fred - chr2L 3960663 intron fred - chr2L 3960785 intron fred - chr2L_8_3960001 chr2L_3960001 RAL-703 81 chr2L 4037783 4037806 chr2L 4037890 4037913 4 107 2.5 1.5 2.0 1.3 130 chr2L 4037783 intron ed + chr2L 4037848 intron ed + chr2L 4037913 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-703 82 chr2L 4066033 4066058 chr2L 4068867 4068885 Juan 8 2835 2.5 4.0 3.2 1.9 2852 chr2L 4066033 intron ed + chr2L 4067459 intron ed + chr2L 4068885 intron ed + chr2L_8_4065001 chr2L_4065001 RAL-703 83 chr2L 4166371 4166398 chr2L 4166464 4166499 5 101 2.0 3.5 2.8 1.3 128 chr2L 4166371 intergenic Or24a - chr2L 4166435 intergenic Or24a - chr2L 4166499 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-703 84 chr2L 4181296 4181302 chr2L 4183911 4183941 Burdock 4 2640 5.0 3.5 4.2 0.8 2645 chr2L 4181296 intergenic not near genes chr2L 4182618 intergenic not near genes chr2L 4183941 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-703 85 chr2L 4229594 4229641 chr2L 4229717 4229764 8 112 2.5 1.0 1.8 2.9 170 chr2L 4229594 intergenic CR44608 + chr2L 4229679 intergenic CR44608 + chr2L 4229764 intergenic CR44608 + chr2L_8_4225001 chr2L_4225001 RAL-703 86 chr2L 4243691 4243720 chr2L 4243802 4243822 7 106 2.5 3.5 3.0 1.8 131 chr2L 4243691 intergenic not near genes chr2L 4243756 intergenic not near genes chr2L 4243822 intergenic not near genes chr2L_7_4240001 chr2L_4240001 RAL-703 87 chr2L 4265476 4265524 chr2L 4265582 4265630 6 106 2.5 3.0 2.8 1.6 154 chr2L 4265476 intergenic not near genes chr2L 4265553 intergenic not near genes chr2L 4265630 intergenic not near genes chr2L_6_4265001 chr2L_4265001 RAL-703 88 chr2L 4266506 4266551 chr2L 4266606 4266651 5 98 2.0 0.5 1.2 2.3 145 chr2L 4266506 intergenic not near genes chr2L 4266578 intergenic not near genes chr2L 4266651 intergenic not near genes chr2L_5_4265001 chr2L_4265001 RAL-703 89 chr2L 4285723 4285733 chr2L 4285794 4285818 4 88 2.5 2.0 2.2 1.2 95 chr2L 4285723 intron tutl + chr2L 4285770 intron tutl + chr2L 4285818 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-703 90 chr2L 4601695 4601721 chr2L 4609155 4609182 mdg1 7 7458 3.0 3.0 3.0 1.8 7487 chr2L 4601695 intron dp - chr2L 4605438 intron dp - chr2L 4609182 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-703 91 chr2L 4661844 4661855 chr2L 4669429 4669454 opus 5 7597 2.5 2.5 2.5 1.4 7610 chr2L 4661844 intergenic not near genes chr2L 4665649 intergenic not near genes chr2L 4669454 intergenic not near genes chr2L_5_4665001 chr2L_4665001 RAL-703 92 chr2L 4793297 4793322 chr2L 4793605 4793636 4 313 2.0 1.0 1.5 1.6 339 chr2L 4793297 intron CG15630 - chr2L 4793466 intron CG15630 - chr2L 4793636 intron CG15630 - chr2L_4_4790001 chr2L_4790001 RAL-703 93 chr2L 4819498 4819515 chr2L 4819615 4819658 6 139 1.5 3.0 2.2 1.9 160 chr2L 4819498 intergenic not near genes chr2L 4819578 intergenic not near genes chr2L 4819658 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-703 94 chr2L 4907611 4907637 chr2L 4907707 4907733 5 96 8.5 0.5 4.5 0.9 122 chr2L 4907611 intergenic not near genes chr2L 4907672 intergenic not near genes chr2L 4907733 intergenic not near genes chr2L_5_4905001 chr2L_4905001 RAL-703 95 chr2L 4925658 4925695 chr2L 4925757 4925794 5 99 2.0 1.0 1.5 2.0 136 chr2L 4925658 intron hoe1 - chr2L 4925726 intron hoe1 - chr2L 4925794 intron hoe1 - chr2L_5_4925001 chr2L_4925001 RAL-703 96 chr2L 4953495 4953534 chr2L 4953756 4953795 pogo 10 258 2.5 1.0 1.8 3.6 300 chr2L 4953495 intergenic Jon25Bii - chr2L 4953645 intergenic not near genes chr2L 4953795 intergenic Jon25Bi - chr2L_10_4950001 chr2L_4950001 RAL-703 97 chr2L 4996072 4996109 chr2L 4996168 4996206 5 96 3.5 3.5 3.5 1.1 134 chr2L 4996072 intron Rtnl1 - chr2L 4996139 intron Rtnl1 - chr2L 4996206 intron Rtnl1 - chr2L_5_4995001 chr2L_4995001 RAL-703 98 chr2L 5027943 5027986 chr2L 5028046 5028089 5 103 1.5 2.5 2.0 1.7 146 chr2L 5027943 intron vkg - chr2L 5028016 intron vkg - chr2L 5028089 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-703 99 chr2L 5117301 5117320 chr2L 5117380 5117422 5 93 2.0 1.5 1.8 1.8 121 chr2L 5117301 intron Msp300 + chr2L 5117362 intron Msp300 + chr2L 5117422 intron Msp300 + chr2L_5_5115001 chr2L_5115001 RAL-703 100 chr2L 5120961 5121000 chr2L 5121075 5121108 8 112 3.0 1.0 2.0 2.7 147 chr2L 5120961 intron Msp300 + chr2L 5121034 intron Msp300 + chr2L 5121108 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-703 101 chr2L 5342751 5342793 chr2L 5345151 5345191 Doc 8 2397 2.5 2.0 2.2 2.5 2440 chr2L 5342751 intergenic not near genes chr2L 5343971 intergenic not near genes chr2L 5345191 intergenic not near genes chr2L_8_5340001 chr2L_5340001 RAL-703 102 chr2L 5503199 5503234 chr2L 5503431 5503463 5 231 2.5 1.5 2.0 1.7 264 chr2L 5503199 intergenic not near genes chr2L 5503331 intergenic not near genes chr2L 5503463 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-703 103 chr2L 5508521 5508534 chr2L 5508613 5508630 4 93 4.5 2.5 3.5 0.9 109 chr2L 5508521 intergenic not near genes chr2L 5508576 intergenic not near genes chr2L 5508630 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-703 104 chr2L 5666282 5666324 chr2L 5666384 5666434 4 107 0.5 1.5 1.0 2.0 152 chr2L 5666282 intron Hsp60C + chr2L 5666358 intron Hsp60C + chr2L 5666434 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-703 105 chr2L 5789743 5789777 chr2L 5790096 5790130 4 350 2.0 1.5 1.8 1.4 387 chr2L 5789743 intron CG9171 - chr2L 5789936 intron CG9171 - chr2L 5790130 intron CG9171 - chr2L_4_5785001 chr2L_5785001 RAL-703 106 chr2L 5805954 5805990 chr2L 5806359 5806377 5 398 4.5 2.0 3.2 1.2 423 chr2L 5805954 intron CG11034 + chr2L 5806166 intron CG11034 + chr2L 5806377 intron CG11034 + chr2L_5_5805001 chr2L_5805001 RAL-703 107 chr2L 5814672 5814711 chr2L 5814775 5814814 7 102 1.5 0.5 1.0 3.5 142 chr2L 5814672 intergenic not near genes chr2L 5814743 intergenic not near genes chr2L 5814814 intergenic not near genes chr2L_7_5810001 chr2L_5810001 RAL-703 108 chr2L 5827712 5827740 chr2L 5836726 5836751 roo 4 9020 2.5 8.0 5.2 0.6 9039 chr2L 5827712 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836751 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-703 109 chr2L 5897573 5897624 chr2L 5897676 5897727 11 91 4.5 3.0 3.8 2.3 154 chr2L 5897573 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897727 intergenic not near genes chr2L_11_5895001 chr2L_5895001 RAL-703 110 chr2L 5926505 5926520 chr2L 5926849 5926877 6 354 1.5 0.5 1.0 3.0 372 chr2L 5926505 intron dsf + chr2L 5926691 intron dsf + chr2L 5926877 intron dsf + chr2L_6_5925001 chr2L_5925001 RAL-703 111 chr2L 5942030 5942054 chr2L 5942126 5942146 9 106 2.5 4.0 3.2 2.1 116 chr2L 5942030 5` UTR CR45289 + chr2L 5942088 5` UTR CR45289 + chr2L 5942146 5` UTR CR45289 + chr2L_9_5940001 chr2L_5940001 RAL-703 112 chr2L 5993324 5993357 chr2L 5993431 5993468 4 108 3.0 2.5 2.8 1.1 144 chr2L 5993324 exon lid - chr2L 5993396 intron lid - chr2L 5993468 intron lid - chr2L_4_5990001 chr2L_5990001 RAL-703 113 chr2L 6103208 6103252 chr2L 6103296 6103347 11 89 4.5 3.0 3.8 2.3 139 chr2L 6103208 intron stai + chr2L 6103278 intron stai + chr2L 6103347 intron stai + chr2L_11_6100001 chr2L_6100001 RAL-703 114 chr2L 6108777 6108820 chr2L 6108879 6108922 6 101 1.5 1.5 1.5 2.4 145 chr2L 6108777 intron stai + chr2L 6108850 intron stai + chr2L 6108922 intron stai + chr2L_6_6105001 chr2L_6105001 RAL-703 115 chr2L 6136532 6136578 chr2L 6136649 6136687 5 112 1.5 3.5 2.5 1.4 155 chr2L 6136532 intergenic not near genes chr2L 6136610 intergenic not near genes chr2L 6136687 intergenic not near genes chr2L_5_6135001 chr2L_6135001 RAL-703 116 chr2L 6253607 6253899 chr2L 6253698 6253995 8 94 3.0 3.0 3.0 2.0 388 chr2L 6253607 intron Ddr + chr2L 6253801 intron Ddr + chr2L 6253995 intron Ddr + chr2L_8_6250001 chr2L_6250001 RAL-703 117 chr2L 6426853 6426887 chr2L 6445120 6445150 roo 7 18275 3.5 6.5 5.0 1.2 18297 chr2L 6426853 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445150 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-703 118 chr2L 6544356 6544385 chr2L 6544468 6544497 6 112 2.5 2.5 2.5 1.7 141 chr2L 6544356 intron eya - chr2L 6544426 intron eya - chr2L 6544497 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-703 119 chr2L 6626888 6626919 chr2L 6626974 6627024 10 99 2.0 3.0 2.5 2.9 136 chr2L 6626888 intron Oatp26F - chr2L 6626956 intron Oatp26F - chr2L 6627024 intron Oatp26F - chr2L_10_6625001 chr2L_6625001 RAL-703 120 chr2L 6771984 6772006 chr2L 6772082 6772094 4 93 5.0 4.5 4.8 0.7 110 chr2L 6771984 intron CG11321 - chr2L 6772039 intron CG11321 - chr2L 6772094 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-703 121 chr2L 6799545 6799555 chr2L 6799627 6799650 5 94 2.5 1.0 1.8 1.8 105 chr2L 6799545 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799650 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-703 122 chr2L 6850365 6850402 chr2L 6850467 6850504 7 102 2.0 2.5 2.2 2.2 139 chr2L 6850365 intergenic not near genes chr2L 6850434 intergenic not near genes chr2L 6850504 intergenic not near genes chr2L_7_6850001 chr2L_6850001 RAL-703 123 chr2L 6873751 6873784 chr2L 6873855 6873888 6 104 1.5 4.0 2.8 1.6 137 chr2L 6873751 intron CR44914 + chr2L 6873820 intron CR44914 + chr2L 6873888 intron CR44914 + chr2L_6_6870001 chr2L_6870001 RAL-703 124 chr2L 6876771 6876806 chr2L 6882965 6882993 diver 4 6194 5.0 1.5 3.2 1.0 6222 chr2L 6876771 intron Nlg2 + chr2L 6879882 intron Nlg2 + chr2L 6882993 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-703 125 chr2L 7100979 7101016 chr2L 7101225 7101261 4 242 0.0 3.0 1.5 1.6 282 chr2L 7100979 intron Pvf3 - chr2L 7101120 intron Pvf3 - chr2L 7101261 intron Pvf3 - chr2L_4_7100001 chr2L_7100001 RAL-703 126 chr2L 7140819 7140870 chr2L 7140921 7140969 8 101 1.5 0.5 1.0 4.0 150 chr2L 7140819 intron Pvf3 - chr2L 7140894 intron Pvf3 - chr2L 7140969 intron Pvf3 - chr2L_8_7140001 chr2L_7140001 RAL-703 127 chr2L 7147308 7147350 chr2L 7147434 7147458 9 124 1.5 2.5 2.0 3.0 150 chr2L 7147308 intron Pvf3 - chr2L 7147383 intron Pvf3 - chr2L 7147458 intron Pvf3 - chr2L_9_7145001 chr2L_7145001 RAL-703 128 chr2L 7325907 7325951 chr2L 7326010 7326048 4 97 2.0 3.0 2.5 1.1 141 chr2L 7325907 intergenic not near genes chr2L 7325978 intergenic not near genes chr2L 7326048 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-703 129 chr2L 7343317 7343343 chr2L 7350439 7350457 roo 7 7129 4.5 1.0 2.8 1.8 7140 chr2L 7343317 intron Wnt6 + chr2L 7346887 intron Wnt6 + chr2L 7350457 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-703 130 chr2L 7363501 7363556 chr2L 7363599 7363654 8 98 1.0 1.5 1.2 3.6 153 chr2L 7363501 5` UTR Wnt10 + chr2L 7363578 5` UTR Wnt10 + chr2L 7363654 5` UTR Wnt10 + chr2L_8_7360001 chr2L_7360001 RAL-703 131 chr2L 7555722 7555761 chr2L 7555819 7555855 4 95 2.5 3.0 2.8 1.1 133 chr2L 7555722 intron RapGAP1 - chr2L 7555788 intron RapGAP1 - chr2L 7555855 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-703 132 chr2L 7567512 7567533 chr2L 7567607 7567641 7 106 1.5 3.5 2.5 2.0 129 chr2L 7567512 intron RapGAP1 - chr2L 7567576 intron RapGAP1 - chr2L 7567641 intron RapGAP1 - chr2L_7_7565001 chr2L_7565001 RAL-703 133 chr2L 7579889 7579919 chr2L 7579991 7580021 7 102 3.5 3.0 3.2 1.7 132 chr2L 7579889 intergenic not near genes chr2L 7579955 intergenic not near genes chr2L 7580021 intergenic not near genes chr2L_7_7575001 chr2L_7575001 RAL-703 134 chr2L 7769543 7769560 chr2L 7769642 7769686 4 119 3.5 2.0 2.8 1.1 143 chr2L 7769543 intron CG7191 + chr2L 7769614 intron CG7191 + chr2L 7769686 intron CG7191 + chr2L_4_7765001 chr2L_7765001 RAL-703 135 chr2L 7775622 7775661 chr2L 7775734 7775773 4 112 2.5 0.5 1.5 1.6 151 chr2L 7775622 intergenic CG7179 - chr2L 7775698 intergenic CG7179 - chr2L 7775773 intergenic CG7179 - chr2L_4_7775001 chr2L_7775001 RAL-703 136 chr2L 7867550 7867598 chr2L 7867663 7867695 5 109 1.0 1.5 1.2 2.3 145 chr2L 7867550 intron Proc - chr2L 7867622 intron Proc - chr2L 7867695 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-703 137 chr2L 7946345 7946385 chr2L 7946673 7946713 10 327 5.0 2.0 3.5 2.2 368 chr2L 7946345 intron Snoo - chr2L 7946529 intron Snoo - chr2L 7946713 intron Snoo - chr2L_10_7945001 chr2L_7945001 RAL-703 138 chr2L 7974894 7974913 chr2L 7974991 7975021 6 108 3.0 4.0 3.5 1.3 127 chr2L 7974894 intron Snoo - chr2L 7974958 intron Snoo - chr2L 7975021 intron Snoo - chr2L_6_7970001 chr2L_7970001 RAL-703 139 chr2L 7977078 7977110 chr2L 7984069 7984098 297 8 6988 3.0 5.0 4.0 1.6 7020 chr2L 7977078 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984098 intron,5` UTR Snoo -,CG7231 + chr2L_8_7980001 chr2L_7980001 RAL-703 140 chr2L 7985243 7985271 chr2L 7985337 7985382 9 105 1.5 6.0 3.8 1.9 139 chr2L 7985243 intron CG7231 + chr2L 7985312 intron CG7231 + chr2L 7985382 intron CG7231 + chr2L_9_7985001 chr2L_7985001 RAL-703 141 chr2L 8018824 8018838 chr2L 8023627 8023642 Doc 4 4804 0.0 4.5 2.2 1.2 4818 chr2L 8018824 intron Tg + chr2L 8021233 intron Tg + chr2L 8023642 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-703 142 chr2L 8044081 8044127 chr2L 8044176 8044223 12 92 2.5 3.5 3.0 3.0 142 chr2L 8044081 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044223 intron CG7466 + chr2L_12_8040001 chr2L_8040001 RAL-703 143 chr2L 8167126 8167172 chr2L 8167237 8167283 9 107 1.5 1.5 1.5 3.6 157 chr2L 8167126 intron Piezo + chr2L 8167204 intron Piezo + chr2L 8167283 intron Piezo + chr2L_9_8165001 chr2L_8165001 RAL-703 144 chr2L 8184909 8184921 chr2L 8185020 8185032 5 111 3.0 4.0 3.5 1.1 123 chr2L 8184909 intron Piezo + chr2L 8184970 intron Piezo + chr2L 8185032 intron Piezo + chr2L_5_8180001 chr2L_8180001 RAL-703 145 chr2L 8184928 8184954 chr2L 8185016 8185064 10 108 1.0 4.0 2.5 2.9 136 chr2L 8184928 intron Piezo + chr2L 8184996 intron Piezo + chr2L 8185064 intron Piezo + chr2L_10_8180001 chr2L_8180001 RAL-703 146 chr2L 8286290 8286326 chr2L 8286384 8286433 7 99 1.0 2.0 1.5 2.8 143 chr2L 8286290 intron Btk29A - chr2L 8286362 intron Btk29A - chr2L 8286433 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-703 147 chr2L 8349590 8349623 chr2L 8349713 8349748 14 122 2.5 2.5 2.5 4.0 158 chr2L 8349590 exon CG7778 + chr2L 8349669 intron CG7778 + chr2L 8349748 exon CG7778 + chr2L_14_8345001 chr2L_8345001 RAL-703 148 chr2L 8502650 8502690 chr2L 8502754 8502794 10 103 7.0 2.0 4.5 1.8 144 chr2L 8502650 intron Dh31 - chr2L 8502722 intron Dh31 - chr2L 8502794 intron Dh31 - chr2L_10_8500001 chr2L_8500001 RAL-703 149 chr2L 8567655 8567709 chr2L 8567752 8567794 9 96 2.5 3.5 3.0 2.2 139 chr2L 8567655 intron Sema-1a + chr2L 8567724 intron Sema-1a + chr2L 8567794 intron Sema-1a + chr2L_9_8565001 chr2L_8565001 RAL-703 150 chr2L 8594458 8594491 chr2L 8601518 8601565 297 6 7069 4.5 4.0 4.2 1.2 7107 chr2L 8594458 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598012 intron Sema-1a + chr2L 8601565 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-703 151 chr2L 8723101 8723144 chr2L 8731497 8731538 Tirant 5 8392 0.5 1.0 0.8 2.8 8437 chr2L 8723101 intron raw - chr2L 8727320 intron raw - chr2L 8731538 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-703 152 chr2L 8789291 8789341 chr2L 8789387 8789436 9 90 5.0 3.5 4.2 1.7 145 chr2L 8789291 intergenic not near genes chr2L 8789364 intergenic not near genes chr2L 8789436 intergenic not near genes chr2L_9_8785001 chr2L_8785001 RAL-703 153 chr2L 8876596 8876646 chr2L 8876738 8876788 11 144 10.0 8.0 9.0 1.1 192 chr2L 8876596 intergenic not near genes chr2L 8876692 intergenic not near genes chr2L 8876788 intergenic not near genes chr2L_11_8875001 chr2L_8875001 RAL-703 154 chr2L 8997260 8997306 chr2L 8997608 8997650 6 354 17.0 20.0 18.5 0.3 390 chr2L 8997260 exon alien - chr2L 8997455 intergenic alien -,CG18661 + chr2L 8997650 5` UTR CG18661 + chr2L_6_8995001 chr2L_8995001 RAL-703 155 chr2L 9000264 9000310 chr2L 9007793 9007819 roo 6 7521 2.0 2.5 2.2 1.9 7555 chr2L 9000264 intergenic Try29F + chr2L 9004042 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-703 156 chr2L 9088572 9088598 chr2L 9089596 9089601 7 1020 2.0 1.0 1.5 2.8 1029 chr2L 9088572 exon Toll-4 + chr2L 9089086 exon Toll-4 + chr2L 9089601 intergenic Toll-4 + chr2L_7_9085001 chr2L_9085001 RAL-703 157 chr2L 9105735 9105778 chr2L 9105906 9105946 7 170 1.0 3.5 2.2 2.2 211 chr2L 9105735 intergenic not near genes chr2L 9105840 intergenic not near genes chr2L 9105946 intergenic not near genes chr2L_7_9105001 chr2L_9105001 RAL-703 158 chr2L 9108295 9108334 chr2L 9108382 9108423 8 94 0.5 2.5 1.5 3.2 128 chr2L 9108295 intergenic not near genes chr2L 9108359 intergenic not near genes chr2L 9108423 intergenic not near genes chr2L_8_9105001 chr2L_9105001 RAL-703 159 chr2L 9171157 9171188 chr2L 9171257 9171287 9 99 3.0 2.0 2.5 2.6 130 chr2L 9171157 intron tai + chr2L 9171222 intron tai + chr2L 9171287 intron tai + chr2L_9_9170001 chr2L_9170001 RAL-703 160 chr2L 9217952 9217994 chr2L 9222759 9222800 Doc 4 4806 4.0 3.0 3.5 0.9 4848 chr2L 9217952 intron tai + chr2L 9220376 intron tai + chr2L 9222800 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-703 161 chr2L 9225830 9225879 chr2L 9225940 9225989 10 109 1.0 2.5 1.8 3.6 159 chr2L 9225830 intron tai + chr2L 9225910 intron tai + chr2L 9225989 intron tai + chr2L_10_9225001 chr2L_9225001 RAL-703 162 chr2L 9251140 9251172 chr2L 9251257 9251289 10 113 3.5 4.5 4.0 2.0 149 chr2L 9251140 intergenic aust -,borr - chr2L 9251214 intergenic aust -,borr - chr2L 9251289 intergenic borr -,aust - chr2L_10_9250001 chr2L_9250001 RAL-703 163 chr2L 9297359 9297403 chr2L 9297456 9297499 9 95 3.0 3.5 3.2 2.1 140 chr2L 9297359 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297499 3` UTR Ggamma30A + chr2L_9_9295001 chr2L_9295001 RAL-703 164 chr2L 9304329 9304490 chr2L 9304433 9304586 4 101 0.0 0.0 0.0 4.0 257 chr2L 9304329 intergenic CR42844 - chr2L 9304458 3` UTR CR42844 - chr2L 9304586 3` UTR CR42844 - chr2L_4_9300001 chr2L_9300001 RAL-703 165 chr2L 9362127 9362152 chr2L 9362225 9362249 8 98 1.0 2.5 1.8 2.9 122 chr2L 9362127 intergenic not near genes chr2L 9362188 intergenic not near genes chr2L 9362249 intergenic not near genes chr2L_8_9360001 chr2L_9360001 RAL-703 166 chr2L 9364280 9364333 chr2L 9364399 9364429 9 114 0.0 1.0 0.5 6.0 149 chr2L 9364280 intergenic CR43404 + chr2L 9364354 5` UTR CR43404 + chr2L 9364429 intron CR43404 + chr2L_9_9360001 chr2L_9360001 RAL-703 167 chr2L 9385097 9385135 chr2L 9385207 9385245 9 107 6.5 2.0 4.2 1.7 148 chr2L 9385097 intron Shawl - chr2L 9385171 intron Shawl - chr2L 9385245 intron Shawl - chr2L_9_9385001 chr2L_9385001 RAL-703 168 chr2L 9391565 9391613 chr2L 9391693 9391743 7 127 2.0 3.0 2.5 2.0 178 chr2L 9391565 intron,3` UTR Shawl -,Aldh + chr2L 9391654 intron Shawl - chr2L 9391743 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-703 169 chr2L 9393480 9393516 chr2L 9396467 9396501 jockey 7 2983 5.0 6.0 5.5 1.1 3021 chr2L 9393480 intron Shawl - chr2L 9394990 intron Shawl - chr2L 9396501 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-703 170 chr2L 9393517 9393529 chr2L 9396463 9396516 jockey 6 2971 3.5 5.5 4.5 1.1 2999 chr2L 9393517 intron Shawl - chr2L 9395016 intron Shawl - chr2L 9396516 intron Shawl - chr2L_6_9395001 chr2L_9395001 RAL-703 171 chr2L 9412141 9412164 chr2L 9412261 9412281 5 119 1.5 7.0 4.2 1.0 140 chr2L 9412141 intron Shawl - chr2L 9412211 intron Shawl - chr2L 9412281 intron Shawl - chr2L_5_9410001 chr2L_9410001 RAL-703 172 chr2L 9506350 9506368 chr2L 9506452 9506464 5 101 0.0 2.5 1.2 2.3 114 chr2L 9506350 intron CG33298 + chr2L 9506407 intron CG33298 + chr2L 9506464 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-703 173 chr2L 9514402 9514427 chr2L 9514503 9514530 5 106 3.5 2.5 3.0 1.2 128 chr2L 9514402 intron CG33298 + chr2L 9514466 intron CG33298 + chr2L 9514530 intron CG33298 + chr2L_5_9510001 chr2L_9510001 RAL-703 174 chr2L 9558311 9558325 chr2L 9558419 9558430 4 104 0.0 2.5 1.2 1.8 119 chr2L 9558311 intron jp - chr2L 9558370 intron jp - chr2L 9558430 intron jp - chr2L_4_9555001 chr2L_9555001 RAL-703 175 chr2L 9733541 9733591 chr2L 9733653 9733703 16 110 1.5 3.0 2.2 5.0 162 chr2L 9733541 intron Nckx30C - chr2L 9733622 intron Nckx30C - chr2L 9733703 intron Nckx30C - chr2L_16_9730001 chr2L_9730001 RAL-703 176 chr2L 9829559 9829581 chr2L 9829782 9829803 4 222 4.0 3.5 3.8 0.8 244 chr2L 9829559 intron nAChRalpha6 - chr2L 9829681 intron nAChRalpha6 - chr2L 9829803 intron nAChRalpha6 - chr2L_4_9825001 chr2L_9825001 RAL-703 177 chr2L 9871532 9871557 chr2L 9871641 9871666 7 109 4.5 0.5 2.5 2.0 134 chr2L 9871532 intron nAChRalpha6 - chr2L 9871599 intron nAChRalpha6 - chr2L 9871666 intron nAChRalpha6 - chr2L_7_9870001 chr2L_9870001 RAL-703 178 chr2L 9956975 9957010 chr2L 9957263 9957282 11 286 5.0 2.0 3.5 2.4 307 chr2L 9956975 exon CG5846 - chr2L 9957128 intergenic CG4658 +,CG5846 - chr2L 9957282 5` UTR CG4658 + chr2L_11_9955001 chr2L_9955001 RAL-703 179 chr2L 9973724 9973756 chr2L 9980846 9980894 HMS-Beagle 7 7134 4.5 3.5 4.0 1.4 7170 chr2L 9973724 intergenic not near genes chr2L 9977309 intergenic not near genes chr2L 9980894 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-703 180 chr2L 10051708 10051750 chr2L 10051812 10051838 7 93 4.5 4.0 4.2 1.3 130 chr2L 10051708 5` UTR CR44874 + chr2L 10051773 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-703 181 chr2L 10087474 10087488 chr2L 10087552 10087584 4 87 5.0 2.0 3.5 0.9 110 chr2L 10087474 intron CG44153 - chr2L 10087529 intron CG44153 - chr2L 10087584 intron CG44153 - chr2L_4_10085001 chr2L_10085001 RAL-703 182 chr2L 10095627 10095659 chr2L 10095727 10095759 6 100 3.0 2.5 2.8 1.6 132 chr2L 10095627 intron CG44153 - chr2L 10095693 intron CG44153 - chr2L 10095759 intron CG44153 - chr2L_6_10095001 chr2L_10095001 RAL-703 183 chr2L 10153183 10153235 chr2L 10153280 10153333 16 93 1.0 3.0 2.0 5.3 150 chr2L 10153183 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153333 intron,exon CG44153 -,CG4839 + chr2L_16_10150001 chr2L_10150001 RAL-703 184 chr2L 10156306 10156319 chr2L 10163796 10163809 blood 5 7488 7.5 4.0 5.8 0.7 7503 chr2L 10156306 intron,3` UTR CG44153 -,CG4839 + chr2L 10160058 intron CG44153 - chr2L 10163809 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-703 185 chr2L 10156321 10156340 chr2L 10163793 10163817 blood 5 7483 5.0 4.0 4.5 0.9 7496 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160069 intron CG44153 - chr2L 10163817 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-703 186 chr2L 10294658 10294677 chr2L 10294764 10294783 5 102 2.0 0.5 1.2 2.3 125 chr2L 10294658 intron Hand - chr2L 10294720 intron Hand - chr2L 10294783 intron Hand - chr2L_5_10290001 chr2L_10290001 RAL-703 187 chr2L 10458086 10458100 chr2L 10458367 10458381 5 280 1.0 0.0 0.5 3.3 295 chr2L 10458086 intron LM408 + chr2L 10458234 intron LM408 + chr2L 10458381 intron LM408 + chr2L_5_10455001 chr2L_10455001 RAL-703 188 chr2L 10474370 10474386 chr2L 10474465 10474467 4 93 4.0 3.0 3.5 0.9 97 chr2L 10474370 intergenic RluA-1 - chr2L 10474418 intergenic RluA-1 - chr2L 10474467 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 RAL-703 189 chr2L 10490265 10490306 chr2L 10490360 10490380 5 95 1.0 2.5 1.8 1.8 115 chr2L 10490265 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490322 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490380 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_5_10490001 chr2L_10490001 RAL-703 190 chr2L 10495292 10495456 chr2L 10495378 10495558 13 101 0.0 0.5 0.2 10.8 266 chr2L 10495292 intron Myo31DF - chr2L 10495425 intron Myo31DF - chr2L 10495558 intron Myo31DF - chr2L_13_10495001 chr2L_10495001 RAL-703 191 chr2L 10515346 10515388 chr2L 10515458 10515493 6 108 1.5 1.0 1.2 2.7 147 chr2L 10515346 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515493 intron,intron CG45083 -,Fatp - chr2L_6_10515001 chr2L_10515001 RAL-703 192 chr2L 10540860 10540880 chr2L 10540957 10540978 5 98 5.5 5.5 5.5 0.8 118 chr2L 10540860 intergenic not near genes chr2L 10540919 intergenic not near genes chr2L 10540978 intergenic not near genes chr2L_5_10540001 chr2L_10540001 RAL-703 193 chr2L 10572684 10572734 chr2L 10572783 10572820 7 91 4.0 6.0 5.0 1.2 136 chr2L 10572684 intron Trim9 + chr2L 10572752 intron Trim9 + chr2L 10572820 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-703 194 chr2L 10592829 10592873 chr2L 10600511 10600542 opus 5 7678 0.5 3.0 1.8 1.8 7713 chr2L 10592829 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600542 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-703 195 chr2L 10640625 10640665 chr2L 10640734 10640774 8 109 2.0 1.0 1.5 3.2 149 chr2L 10640625 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640774 exon CG31872 + chr2L_8_10640001 chr2L_10640001 RAL-703 196 chr2L 10683432 10683477 chr2L 10683531 10683576 6 99 2.5 0.5 1.5 2.4 144 chr2L 10683432 3` UTR CG7299 - chr2L 10683504 3` UTR CG7299 - chr2L 10683576 3` UTR CG7299 - chr2L_6_10680001 chr2L_10680001 RAL-703 197 chr2L 10704896 10704943 chr2L 10705011 10705058 5 114 2.5 0.5 1.5 2.0 162 chr2L 10704896 intron,exon Lip2 -,CG6415 + chr2L 10704977 intron Lip2 - chr2L 10705058 exon Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-703 198 chr2L 10705431 10705473 chr2L 10705532 10705549 7 88 4.5 4.0 4.2 1.3 118 chr2L 10705431 exon Lip2 - chr2L 10705490 exon Lip2 - chr2L 10705549 intron Lip2 - chr2L_7_10705001 chr2L_10705001 RAL-703 199 chr2L 10740313 10740354 chr2L 10740427 10740466 9 114 3.0 5.0 4.0 1.8 153 chr2L 10740313 3` UTR CG12299 + chr2L 10740390 3` UTR CG12299 + chr2L 10740466 3` UTR CG12299 + chr2L_9_10740001 chr2L_10740001 RAL-703 200 chr2L 10793314 10793339 chr2L 10793402 10793434 5 93 1.5 2.5 2.0 1.7 120 chr2L 10793314 intron CG31869 - chr2L 10793374 intron CG31869 - chr2L 10793434 intron CG31869 - chr2L_5_10790001 chr2L_10790001 RAL-703 201 chr2L 10809517 10809553 chr2L 10809607 10809656 10 101 3.0 2.5 2.8 2.6 139 chr2L 10809517 intron Nos - chr2L 10809586 intron Nos - chr2L 10809656 intron Nos - chr2L_10_10805001 chr2L_10805001 RAL-703 202 chr2L 10862837 10862874 chr2L 10864454 10864504 Rt1c 11 1625 3.5 2.0 2.8 2.9 1667 chr2L 10862837 3` UTR CR43807 - chr2L 10863670 intron CR43807 - chr2L 10864504 3` UTR CR43807 - chr2L_11_10860001 chr2L_10860001 RAL-703 203 chr2L 10946947 10946964 chr2L 10956166 10956179 roo 7 9229 2.5 2.0 2.2 2.2 9232 chr2L 10946947 intron dpr2 - chr2L 10951563 intron dpr2 - chr2L 10956179 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-703 204 chr2L 11055045 11055074 chr2L 11055150 11055161 8 100 2.0 3.5 2.8 2.1 116 chr2L 11055045 intron Samuel - chr2L 11055103 intron Samuel - chr2L 11055161 intron Samuel - chr2L_8_11055001 chr2L_11055001 RAL-703 205 chr2L 11182297 11182326 chr2L 11182376 11182422 7 93 2.0 2.5 2.2 2.2 125 chr2L 11182297 intron Ca-beta - chr2L 11182360 intron Ca-beta - chr2L 11182422 intron Ca-beta - chr2L_7_11180001 chr2L_11180001 RAL-703 206 chr2L 11183780 11183810 chr2L 11183894 11183926 4 115 1.5 2.0 1.8 1.4 146 chr2L 11183780 intron Ca-beta - chr2L 11183853 intron Ca-beta - chr2L 11183926 intron Ca-beta - chr2L_4_11180001 chr2L_11180001 RAL-703 207 chr2L 11224043 11224090 chr2L 11224167 11224220 10 126 1.0 2.5 1.8 3.6 177 chr2L 11224043 intron ab + chr2L 11224132 intron ab + chr2L 11224220 intron ab + chr2L_10_11220001 chr2L_11220001 RAL-703 208 chr2L 11292395 11292403 chr2L 11292464 11292487 5 91 4.0 5.0 4.5 0.9 92 chr2L 11292395 intergenic not near genes chr2L 11292441 intergenic not near genes chr2L 11292487 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-703 209 chr2L 11357628 11357661 chr2L 11357730 11357764 7 103 2.5 1.5 2.0 2.3 136 chr2L 11357628 intergenic not near genes chr2L 11357696 intergenic not near genes chr2L 11357764 intergenic not near genes chr2L_7_11355001 chr2L_11355001 RAL-703 210 chr2L 11380599 11380635 chr2L 11380696 11380732 11 95 2.0 3.5 2.8 2.9 133 chr2L 11380599 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380732 intergenic not near genes chr2L_11_11380001 chr2L_11380001 RAL-703 211 chr2L 11418647 11418688 chr2L 11418741 11418782 7 94 0.5 4.5 2.5 2.0 135 chr2L 11418647 intergenic not near genes chr2L 11418714 intergenic not near genes chr2L 11418782 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-703 212 chr2L 11450112 11450155 chr2L 11450209 11450216 5 94 0.0 0.5 0.2 4.2 104 chr2L 11450112 intergenic not near genes chr2L 11450164 intergenic not near genes chr2L 11450216 intergenic not near genes chr2L_5_11450001 chr2L_11450001 RAL-703 213 chr2L 11496621 11496637 chr2L 11496719 11496734 7 98 4.0 4.0 4.0 1.4 113 chr2L 11496621 intergenic CG6488 - chr2L 11496678 intergenic CG6488 - chr2L 11496734 intergenic CG6488 - chr2L_7_11495001 chr2L_11495001 RAL-703 214 chr2L 11537972 11538007 chr2L 11538085 11538098 6 108 1.0 6.0 3.5 1.3 126 chr2L 11537972 intergenic not near genes chr2L 11538035 intergenic not near genes chr2L 11538098 intergenic not near genes chr2L_6_11535001 chr2L_11535001 RAL-703 215 chr2L 11563620 11563664 chr2L 11568841 11568888 copia 6 5222 2.5 0.5 1.5 2.4 5268 chr2L 11563620 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568888 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-703 216 chr2L 11610525 11610571 chr2L 11610624 11610653 4 94 1.0 1.0 1.0 2.0 128 chr2L 11610525 intron,3` UTR kek2 +,spag4 - chr2L 11610589 intron,3` UTR kek2 +,spag4 - chr2L 11610653 intron,3` UTR kek2 +,spag4 - chr2L_4_11610001 chr2L_11610001 RAL-703 217 chr2L 11614061 11614085 chr2L 11615574 11615587 hopper2 4 1508 2.0 2.5 2.2 1.2 1526 chr2L 11614061 intron kek2 + chr2L 11614824 intron kek2 + chr2L 11615587 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-703 218 chr2L 11672133 11672158 chr2L 11672246 11672285 6 118 2.5 3.0 2.8 1.6 152 chr2L 11672133 intergenic not near genes chr2L 11672209 intergenic not near genes chr2L 11672285 intergenic not near genes chr2L_6_11670001 chr2L_11670001 RAL-703 219 chr2L 11713502 11713532 chr2L 11720990 11721006 blood 7 7483 3.0 6.5 4.8 1.2 7504 chr2L 11713502 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-703 220 chr2L 11862341 11862387 chr2L 11862454 11862500 6 113 1.5 4.0 2.8 1.6 159 chr2L 11862341 intron Pde1c - chr2L 11862420 intron Pde1c - chr2L 11862500 intron Pde1c - chr2L_6_11860001 chr2L_11860001 RAL-703 221 chr2L 12065241 12065293 chr2L 12065349 12065389 10 99 5.0 2.5 3.8 2.1 148 chr2L 12065241 intron CG14946 - chr2L 12065315 5` UTR CG14946 - chr2L 12065389 5` UTR CG14946 - chr2L_10_12065001 chr2L_12065001 RAL-703 222 chr2L 12067309 12067361 chr2L 12074381 12074397 297 5 7065 1.0 2.5 1.8 1.8 7088 chr2L 12067309 intergenic not near genes chr2L 12070853 intergenic not near genes chr2L 12074397 intergenic not near genes chr2L_5_12070001 chr2L_12070001 RAL-703 223 chr2L 12078400 12078421 chr2L 12078496 12078523 9 106 2.0 5.5 3.8 1.9 123 chr2L 12078400 intergenic not near genes chr2L 12078462 intergenic not near genes chr2L 12078523 intergenic not near genes chr2L_9_12075001 chr2L_12075001 RAL-703 224 chr2L 12123253 12123271 chr2L 12123358 12123376 4 105 1.0 8.0 4.5 0.7 123 chr2L 12123253 intron CG17211 + chr2L 12123314 intron CG17211 + chr2L 12123376 intron CG17211 + chr2L_4_12120001 chr2L_12120001 RAL-703 225 chr2L 12132705 12132747 chr2L 12132811 12132853 5 106 0.0 2.0 1.0 2.5 148 chr2L 12132705 intron rho-6 - chr2L 12132779 intron rho-6 - chr2L 12132853 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-703 226 chr2L 12262836 12262863 chr2L 12262940 12262967 4 104 0.0 4.5 2.2 1.2 131 chr2L 12262836 intron aret + chr2L 12262902 intron aret + chr2L 12262967 intron aret + chr2L_4_12260001 chr2L_12260001 RAL-703 227 chr2L 12272142 12272197 chr2L 12272240 12272278 7 94 2.0 2.0 2.0 2.3 136 chr2L 12272142 intron aret + chr2L 12272210 intron aret + chr2L 12272278 intron aret + chr2L_7_12270001 chr2L_12270001 RAL-703 228 chr2L 12278914 12278923 chr2L 12279010 12279023 5 97 2.5 1.5 2.0 1.7 109 chr2L 12278914 exon aret + chr2L 12278968 intron aret + chr2L 12279023 intron aret + chr2L_5_12275001 chr2L_12275001 RAL-703 229 chr2L 12366843 12366874 chr2L 12366949 12366980 5 102 1.5 1.0 1.2 2.3 137 chr2L 12366843 intron bru-2 + chr2L 12366912 intron bru-2 + chr2L 12366980 intron bru-2 + chr2L_5_12365001 chr2L_12365001 RAL-703 230 chr2L 12394945 12394988 chr2L 12395059 12395120 4 127 4.0 0.0 2.0 1.3 175 chr2L 12394945 intron bru-2 + chr2L 12395032 intron bru-2 + chr2L 12395120 intron bru-2 + chr2L_4_12395001 chr2L_12395001 RAL-703 231 chr2L 12480521 12480572 chr2L 12480618 12480669 10 95 2.0 2.0 2.0 3.3 148 chr2L 12480521 intron bun - chr2L 12480595 intron bun - chr2L 12480669 intron bun - chr2L_10_12480001 chr2L_12480001 RAL-703 232 chr2L 12487867 12487913 chr2L 12487968 12487983 9 93 1.5 1.5 1.5 3.6 116 chr2L 12487867 intron bun - chr2L 12487925 intron bun - chr2L 12487983 intron bun - chr2L_9_12485001 chr2L_12485001 RAL-703 233 chr2L 12510121 12510136 chr2L 12510220 12510240 5 102 4.5 3.0 3.8 1.0 119 chr2L 12510121 intron bun - chr2L 12510180 intron bun - chr2L 12510240 intron bun - chr2L_5_12510001 chr2L_12510001 RAL-703 234 chr2L 12529217 12529247 chr2L 12529389 12529392 4 165 2.0 1.5 1.8 1.4 175 chr2L 12529217 intron bun - chr2L 12529304 intron bun - chr2L 12529392 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-703 235 chr2L 12558315 12558353 chr2L 12565464 12565485 HMS-Beagle 7 7146 3.0 5.5 4.2 1.3 7170 chr2L 12558315 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565485 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-703 236 chr2L 12638760 12638800 chr2L 12638881 12638923 11 121 2.0 2.0 2.0 3.7 163 chr2L 12638760 intron Ref2 - chr2L 12638842 intron Ref2 - chr2L 12638923 intron Ref2 - chr2L_11_12635001 chr2L_12635001 RAL-703 237 chr2L 12693829 12693867 chr2L 12693925 12693948 12 94 6.0 0.5 3.2 2.9 119 chr2L 12693829 exon CG6153 + chr2L 12693888 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693948 3` UTR CG5780 - chr2L_12_12690001 chr2L_12690001 RAL-703 238 chr2L 12696413 12696455 chr2L 12696509 12696544 8 92 0.0 2.0 1.0 4.0 131 chr2L 12696413 intron PICK1 + chr2L 12696478 intron,exon PICK1 +,CG5781 - chr2L 12696544 intron,exon PICK1 +,CG5781 - chr2L_8_12695001 chr2L_12695001 RAL-703 239 chr2L 12728907 12728947 chr2L 12729167 12729207 pogo 11 258 5.0 5.5 5.2 1.8 300 chr2L 12728907 intron MRP + chr2L 12729057 intron MRP + chr2L 12729207 exon MRP + chr2L_11_12725001 chr2L_12725001 RAL-703 240 chr2L 12731042 12731084 chr2L 12735829 12735869 F-element 9 4784 1.5 1.5 1.5 3.6 4827 chr2L 12731042 intron MRP + chr2L 12733456 intron MRP + chr2L 12735869 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-703 241 chr2L 12739159 12739201 chr2L 12743960 12743993 Doc 13 4797 3.0 2.0 2.5 3.7 4834 chr2L 12739159 exon MRP + chr2L 12741576 intron MRP + chr2L 12743993 exon MRP + chr2L_13_12740001 chr2L_12740001 RAL-703 242 chr2L 12760229 12760256 chr2L 12760344 12760372 6 114 3.0 2.5 2.8 1.6 143 chr2L 12760229 intergenic CG15483 - chr2L 12760300 intergenic CG15483 - chr2L 12760372 3` UTR CG15483 - chr2L_6_12760001 chr2L_12760001 RAL-703 243 chr2L 12781791 12781811 chr2L 12789254 12789273 Quasimodo 7 7463 6.5 2.5 4.5 1.3 7482 chr2L 12781791 intergenic not near genes chr2L 12785532 intergenic not near genes chr2L 12789273 intergenic not near genes chr2L_7_12785001 chr2L_12785001 RAL-703 244 chr2L 12860019 12860064 chr2L 12860125 12860164 9 103 5.0 6.5 5.8 1.3 145 chr2L 12860019 intergenic not near genes chr2L 12860092 intergenic not near genes chr2L 12860164 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-703 245 chr2L 12861678 12861686 chr2L 12863163 12863173 hobo 4 1486 7.5 4.5 6.0 0.6 1495 chr2L 12861678 intergenic not near genes chr2L 12862426 intergenic not near genes chr2L 12863173 intergenic not near genes chr2L_4_12860001 chr2L_12860001 RAL-703 246 chr2L 12861689 12861725 chr2L 12863160 12863175 hobo 12 1477 3.0 4.0 3.5 2.7 1486 chr2L 12861689 intergenic not near genes chr2L 12862432 intergenic not near genes chr2L 12863175 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-703 247 chr2L 12894009 12894052 chr2L 12895485 12895514 hobo 10 1478 3.0 1.5 2.2 3.1 1505 chr2L 12894009 intergenic not near genes chr2L 12894762 intergenic not near genes chr2L 12895514 intergenic not near genes chr2L_10_12890001 chr2L_12890001 RAL-703 248 chr2L 12905456 12905498 chr2L 12905559 12905602 7 100 2.0 0.5 1.2 3.2 146 chr2L 12905456 intergenic not near genes chr2L 12905529 intergenic not near genes chr2L 12905602 intergenic not near genes chr2L_7_12905001 chr2L_12905001 RAL-703 249 chr2L 12933834 12933874 chr2L 12941316 12941361 blood 14 7484 2.5 2.5 2.5 4.0 7527 chr2L 12933834 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941361 intergenic not near genes chr2L_14_12935001 chr2L_12935001 RAL-703 250 chr2L 12945955 12946008 chr2L 12946055 12946069 10 93 0.5 0.5 0.5 6.7 114 chr2L 12945955 intergenic not near genes chr2L 12946012 intergenic not near genes chr2L 12946069 intergenic not near genes chr2L_10_12945001 chr2L_12945001 RAL-703 251 chr2L 13036231 13036257 chr2L 13036493 13036519 X-element 6 262 3.5 0.0 1.8 2.1 288 chr2L 13036231 intron CG9932 - chr2L 13036375 intron CG9932 - chr2L 13036519 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-703 252 chr2L 13215367 13215414 chr2L 13215661 13215709 8 290 2.5 3.0 2.8 2.1 342 chr2L 13215367 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215538 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215709 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_8_13215001 chr2L_13215001 RAL-703 253 chr2L 13405630 13405680 chr2L 13410447 13410497 Doc 9 4815 1.5 3.5 2.5 2.6 4867 chr2L 13405630 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410497 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-703 254 chr2L 13449459 13449485 chr2L 13456915 13456929 Quasimodo 7 7454 4.5 5.5 5.0 1.2 7470 chr2L 13449459 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-703 255 chr2L 13481430 13481462 chr2L 13482056 13482088 jockey 7 621 6.5 3.0 4.8 1.2 658 chr2L 13481430 intron CG42784 + chr2L 13481759 intron CG42784 + chr2L 13482088 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-703 256 chr2L 13522122 13522164 chr2L 13527660 13527684 Transpac 8 5533 0.5 2.5 1.5 3.2 5562 chr2L 13522122 intron B4 - chr2L 13524903 intron B4 - chr2L 13527684 intron B4 - chr2L_8_13520001 chr2L_13520001 RAL-703 257 chr2L 13567072 13567119 chr2L 13567180 13567227 9 103 1.0 0.5 0.8 5.0 155 chr2L 13567072 intron kuz + chr2L 13567150 intron kuz + chr2L 13567227 intron kuz + chr2L_9_13565001 chr2L_13565001 RAL-703 258 chr2L 13608027 13608075 chr2L 13608156 13608202 11 125 4.0 2.5 3.2 2.6 175 chr2L 13608027 intron kuz + chr2L 13608114 intron kuz + chr2L 13608202 intron kuz + chr2L_11_13605001 chr2L_13605001 RAL-703 259 chr2L 13670120 13670145 chr2L 13670332 13670358 4 213 3.5 2.0 2.8 1.1 238 chr2L 13670120 intron CG18507 + chr2L 13670239 intron CG18507 + chr2L 13670358 intron CG18507 + chr2L_4_13670001 chr2L_13670001 RAL-703 260 chr2L 13717609 13717650 chr2L 13717721 13717761 9 108 4.0 2.5 3.2 2.1 152 chr2L 13717609 intergenic CG31814 - chr2L 13717685 intergenic CG31814 - chr2L 13717761 intergenic CG31814 - chr2L_9_13715001 chr2L_13715001 RAL-703 261 chr2L 13721493 13721500 chr2L 13721569 13721583 4 87 3.0 3.0 3.0 1.0 90 chr2L 13721493 intergenic not near genes chr2L 13721538 intergenic not near genes chr2L 13721583 intergenic not near genes chr2L_4_13720001 chr2L_13720001 RAL-703 262 chr2L 13740086 13740094 chr2L 13740153 13740193 4 92 0.5 4.5 2.5 1.1 107 chr2L 13740086 intergenic not near genes chr2L 13740140 intergenic not near genes chr2L 13740193 intergenic not near genes chr2L_4_13740001 chr2L_13740001 RAL-703 263 chr2L 13752540 13752585 chr2L 13752641 13752652 6 92 2.5 2.0 2.2 1.9 112 chr2L 13752540 intron,intron CR44846 +,TM9SF4 + chr2L 13752596 intron,intron CR44846 +,TM9SF4 + chr2L 13752652 intron,intron CR44846 +,TM9SF4 + chr2L_6_13750001 chr2L_13750001 RAL-703 264 chr2L 13761799 13761835 chr2L 13762915 13762951 Doc 7 1126 2.0 2.0 2.0 2.3 1152 chr2L 13761799 intron TM9SF4 + chr2L 13762375 intron TM9SF4 + chr2L 13762951 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-703 265 chr2L 13913580 13913602 chr2L 13913713 13913727 8 130 3.5 6.0 4.8 1.4 147 chr2L 13913580 intergenic not near genes chr2L 13913654 intergenic not near genes chr2L 13913727 intergenic not near genes chr2L_8_13910001 chr2L_13910001 RAL-703 266 chr2L 13978355 13978401 chr2L 13978444 13978491 11 87 3.0 3.5 3.2 2.6 136 chr2L 13978355 exon Cyp28a5 + chr2L 13978423 exon Cyp28a5 + chr2L 13978491 exon Cyp28a5 + chr2L_11_13975001 chr2L_13975001 RAL-703 267 chr2L 13981504 13981542 chr2L 13981615 13981653 9 103 2.5 3.0 2.8 2.4 149 chr2L 13981504 exon NimC2 + chr2L 13981578 intron NimC2 + chr2L 13981653 intron NimC2 + chr2L_9_13980001 chr2L_13980001 RAL-703 268 chr2L 13988270 13988390 chr2L 13988377 13988491 7 103 0.5 0.5 0.5 4.7 221 chr2L 13988270 intron rk - chr2L 13988380 intron rk - chr2L 13988491 intron rk - chr2L_7_13985001 chr2L_13985001 RAL-703 269 chr2L 14160683 14160709 chr2L 14160773 14160803 4 95 1.5 1.5 1.5 1.6 120 chr2L 14160683 intergenic CG17341 +,CG43332 - chr2L 14160743 intergenic CG17341 +,CG43332 - chr2L 14160803 intergenic CG17341 +,CG43332 - chr2L_4_14160001 chr2L_14160001 RAL-703 270 chr2L 14190138 14190169 chr2L 14190718 14190765 9 590 3.5 2.5 3.0 2.2 627 chr2L 14190138 intron Dyrk2 - chr2L 14190452 intron Dyrk2 - chr2L 14190765 intron Dyrk2 - chr2L_9_14190001 chr2L_14190001 RAL-703 271 chr2L 14246285 14246305 chr2L 14246383 14246400 5 96 0.0 0.0 0.0 5.0 115 chr2L 14246285 intergenic not near genes chr2L 14246342 intergenic not near genes chr2L 14246400 intergenic not near genes chr2L_5_14245001 chr2L_14245001 RAL-703 272 chr2L 14340506 14340523 chr2L 14340608 14340611 4 98 0.0 1.0 0.5 2.7 105 chr2L 14340506 intron CG33090 + chr2L 14340558 intron CG33090 + chr2L 14340611 intron CG33090 + chr2L_4_14340001 chr2L_14340001 RAL-703 273 chr2L 14369122 14369155 chr2L 14369258 14369290 6 134 2.5 4.5 3.5 1.3 168 chr2L 14369122 intergenic not near genes chr2L 14369206 intergenic not near genes chr2L 14369290 intergenic not near genes chr2L_6_14365001 chr2L_14365001 RAL-703 274 chr2L 14429419 14429434 chr2L 14429520 14429535 6 100 3.5 1.5 2.5 1.7 116 chr2L 14429419 3` UTR CR44732 - chr2L 14429477 3` UTR CR44732 - chr2L 14429535 3` UTR CR44732 - chr2L_6_14425001 chr2L_14425001 RAL-703 275 chr2L 14510540 14510570 chr2L 14510639 14510658 9 104 1.5 0.0 0.8 5.0 118 chr2L 14510540 3` UTR CR45693 - chr2L 14510599 3` UTR CR45693 - chr2L 14510658 3` UTR CR45693 - chr2L_9_14510001 chr2L_14510001 RAL-703 276 chr2L 14564181 14564228 chr2L 14564277 14564307 6 90 3.0 2.5 2.8 1.6 126 chr2L 14564181 intergenic CG3473 - chr2L 14564244 intergenic not near genes chr2L 14564307 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-703 277 chr2L 14588367 14588377 chr2L 14588541 14588550 4 174 3.5 2.5 3.0 1.0 183 chr2L 14588367 intergenic CG42680 - chr2L 14588458 intergenic CG42680 - chr2L 14588550 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-703 278 chr2L 14588396 14588418 chr2L 14588538 14588592 7 169 3.0 2.5 2.8 1.8 196 chr2L 14588396 intergenic CG42680 - chr2L 14588494 intergenic CG42680 - chr2L 14588592 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-703 279 chr2L 14669786 14669841 chr2L 14669881 14669911 8 88 2.0 3.0 2.5 2.3 125 chr2L 14669786 intron osp - chr2L 14669848 intron osp - chr2L 14669911 intron osp - chr2L_8_14665001 chr2L_14665001 RAL-703 280 chr2L 14707189 14707228 chr2L 14707328 14707367 7 139 3.5 2.5 3.0 1.8 178 chr2L 14707189 intergenic not near genes chr2L 14707278 intergenic not near genes chr2L 14707367 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-703 281 chr2L 14772691 14772737 chr2L 14772810 14772856 5 119 1.0 3.0 2.0 1.7 165 chr2L 14772691 intergenic not near genes chr2L 14772774 intergenic not near genes chr2L 14772856 intergenic not near genes chr2L_5_14770001 chr2L_14770001 RAL-703 282 chr2L 14781542 14781587 chr2L 14781662 14781708 8 120 1.0 1.0 1.0 4.0 166 chr2L 14781542 intergenic not near genes chr2L 14781625 intergenic not near genes chr2L 14781708 intergenic not near genes chr2L_8_14780001 chr2L_14780001 RAL-703 283 chr2L 14803877 14803906 chr2L 14809087 14809129 copia 5 5219 1.5 2.5 2.0 1.7 5252 chr2L 14803877 intergenic not near genes chr2L 14806503 intergenic not near genes chr2L 14809129 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-703 284 chr2L 14819818 14819851 chr2L 14819958 14820000 6 147 1.0 1.5 1.2 2.7 182 chr2L 14819818 intergenic not near genes chr2L 14819909 intergenic not near genes chr2L 14820000 intergenic not near genes chr2L_6_14815001 chr2L_14815001 RAL-703 285 chr2L 14833790 14833812 chr2L 14833910 14833933 7 123 1.5 2.5 2.0 2.3 143 chr2L 14833790 intergenic not near genes chr2L 14833862 intergenic not near genes chr2L 14833933 intergenic not near genes chr2L_7_14830001 chr2L_14830001 RAL-703 286 chr2L 14840981 14841005 chr2L 14841081 14841100 4 102 4.0 3.5 3.8 0.8 119 chr2L 14840981 3` UTR CR43805 - chr2L 14841040 3` UTR CR43805 - chr2L 14841100 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-703 287 chr2L 14850683 14850717 chr2L 14850772 14850806 4 90 1.0 2.5 1.8 1.4 123 chr2L 14850683 intron CG15279 - chr2L 14850744 intron CG15279 - chr2L 14850806 intron CG15279 - chr2L_4_14850001 chr2L_14850001 RAL-703 288 chr2L 14857438 14857470 chr2L 14857540 14857564 6 100 2.5 2.0 2.2 1.9 126 chr2L 14857438 intergenic not near genes chr2L 14857501 intergenic not near genes chr2L 14857564 intergenic not near genes chr2L_6_14855001 chr2L_14855001 RAL-703 289 chr2L 14866948 14866974 chr2L 14867050 14867085 4 103 3.5 3.0 3.2 1.0 137 chr2L 14866948 intergenic not near genes chr2L 14867016 intergenic not near genes chr2L 14867085 intergenic not near genes chr2L_4_14865001 chr2L_14865001 RAL-703 290 chr2L 14933369 14933385 chr2L 14933464 14933483 6 96 2.5 5.5 4.0 1.2 114 chr2L 14933369 intron CG42313 - chr2L 14933426 intron CG42313 - chr2L 14933483 intron CG42313 - chr2L_6_14930001 chr2L_14930001 RAL-703 291 chr2L 14943090 14943127 chr2L 14943341 14943382 6 254 2.5 2.0 2.2 1.9 292 chr2L 14943090 intron CG42313 - chr2L 14943236 intron CG42313 - chr2L 14943382 intron CG42313 - chr2L_6_14940001 chr2L_14940001 RAL-703 292 chr2L 14982123 14982275 chr2L 14982250 14982381 12 115 0.0 0.0 0.0 12.0 258 chr2L 14982123 intron mol - chr2L 14982252 intron mol - chr2L 14982381 intron mol - chr2L_12_14980001 chr2L_14980001 RAL-703 293 chr2L 14984367 14984398 chr2L 14991988 14992020 opus 5 7618 4.5 4.5 4.5 0.9 7653 chr2L 14984367 intron mol - chr2L 14988194 intron mol - chr2L 14992020 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-703 294 chr2L 15014601 15014622 chr2L 15014700 15014707 4 87 0.0 1.5 0.8 2.2 106 chr2L 15014601 intergenic not near genes chr2L 15014654 intergenic not near genes chr2L 15014707 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-703 295 chr2L 15026004 15026053 chr2L 15026103 15026144 18 94 4.5 5.0 4.8 3.1 140 chr2L 15026004 exon GABA-B-R1 + chr2L 15026074 intron GABA-B-R1 + chr2L 15026144 intron GABA-B-R1 + chr2L_18_15025001 chr2L_15025001 RAL-703 296 chr2L 15044704 15044726 chr2L 15044800 15044804 5 92 2.0 0.0 1.0 2.5 100 chr2L 15044704 intergenic ck - chr2L 15044754 intergenic ck - chr2L 15044804 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-703 297 chr2L 15078053 15078100 chr2L 15078161 15078208 11 108 1.0 4.0 2.5 3.1 155 chr2L 15078053 intron CG15270 + chr2L 15078130 intron CG15270 + chr2L 15078208 intron CG15270 + chr2L_11_15075001 chr2L_15075001 RAL-703 298 chr2L 15103841 15103868 chr2L 15103957 15103958 4 105 3.5 0.0 1.8 1.4 117 chr2L 15103841 intergenic not near genes chr2L 15103900 intergenic not near genes chr2L 15103958 intergenic not near genes chr2L_4_15100001 chr2L_15100001 RAL-703 299 chr2L 15137759 15137774 chr2L 15137863 15137867 5 101 6.0 0.0 3.0 1.2 108 chr2L 15137759 intergenic not near genes chr2L 15137813 intergenic not near genes chr2L 15137867 intergenic not near genes chr2L_5_15135001 chr2L_15135001 RAL-703 300 chr2L 15169817 15169850 chr2L 15169914 15169947 6 94 1.0 0.5 0.8 3.3 130 chr2L 15169817 intron CG4168 - chr2L 15169882 intron CG4168 - chr2L 15169947 intron CG4168 - chr2L_6_15165001 chr2L_15165001 RAL-703 301 chr2L 15225053 15225071 chr2L 15225170 15225184 4 116 4.5 2.5 3.5 0.9 131 chr2L 15225053 intergenic not near genes chr2L 15225118 intergenic not near genes chr2L 15225184 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-703 302 chr2L 15226389 15226396 chr2L 15226451 15226490 5 76 2.5 3.0 2.8 1.3 101 chr2L 15226389 intergenic not near genes chr2L 15226440 intergenic not near genes chr2L 15226490 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-703 303 chr2L 15231411 15231455 chr2L 15231526 15231571 7 103 0.5 2.5 1.5 2.8 160 chr2L 15231411 intron ZnT35C - chr2L 15231491 intron ZnT35C - chr2L 15231571 intron ZnT35C - chr2L_7_15230001 chr2L_15230001 RAL-703 304 chr2L 15446030 15446076 chr2L 15453519 15453565 blood 10 7486 2.5 1.0 1.8 3.6 7535 chr2L 15446030 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453565 intergenic not near genes chr2L_10_15445001 chr2L_15445001 RAL-703 305 chr2L 15499897 15499938 chr2L 15500004 15500045 7 108 0.0 2.5 1.2 3.2 148 chr2L 15499897 intron lace + chr2L 15499971 intron lace + chr2L 15500045 intron lace + chr2L_7_15495001 chr2L_15495001 RAL-703 306 chr2L 15586393 15586423 chr2L 15593465 15593483 297 6 7070 3.5 2.5 3.0 1.5 7090 chr2L 15586393 intergenic not near genes chr2L 15589938 intergenic not near genes chr2L 15593483 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-703 307 chr2L 15795609 15795650 chr2L 15795803 15795844 9 193 3.0 2.5 2.8 2.4 235 chr2L 15795609 intergenic not near genes chr2L 15795726 intergenic not near genes chr2L 15795844 intergenic not near genes chr2L_9_15795001 chr2L_15795001 RAL-703 308 chr2L 15823336 15823371 chr2L 15823432 15823467 4 96 2.0 1.5 1.8 1.4 131 chr2L 15823336 intergenic CR44601 - chr2L 15823402 intergenic CR44601 - chr2L 15823467 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-703 309 chr2L 15825645 15825692 chr2L 15825743 15825790 8 91 3.0 2.0 2.5 2.3 145 chr2L 15825645 intergenic not near genes chr2L 15825718 intergenic not near genes chr2L 15825790 intergenic not near genes chr2L_8_15825001 chr2L_15825001 RAL-703 310 chr2L 15844525 15844563 chr2L 15844622 15844634 5 84 2.0 6.5 4.2 1.0 109 chr2L 15844525 intergenic not near genes chr2L 15844580 intergenic not near genes chr2L 15844634 intergenic not near genes chr2L_5_15840001 chr2L_15840001 RAL-703 311 chr2L 15950370 15950409 chr2L 15950464 15950507 11 94 0.0 1.0 0.5 7.3 137 chr2L 15950370 intron beat-Ib - chr2L 15950438 intron beat-Ib - chr2L 15950507 intron beat-Ib - chr2L_11_15950001 chr2L_15950001 RAL-703 312 chr2L 15956005 15956021 chr2L 15957492 15957500 hobo 7 1485 5.5 2.5 4.0 1.4 1495 chr2L 15956005 intron beat-Ib - chr2L 15956752 intron beat-Ib - chr2L 15957500 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-703 313 chr2L 15956026 15956059 chr2L 15957488 15957530 hobo 8 1481 1.0 1.5 1.2 3.6 1504 chr2L 15956026 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957530 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-703 314 chr2L 15977960 15977987 chr2L 15978057 15978100 7 106 0.0 7.0 3.5 1.6 140 chr2L 15977960 intergenic not near genes chr2L 15978030 intergenic not near genes chr2L 15978100 intergenic not near genes chr2L_7_15975001 chr2L_15975001 RAL-703 315 chr2L 16027376 16027403 chr2L 16027471 16027498 4 95 3.0 1.5 2.2 1.2 122 chr2L 16027376 intron beat-Ic + chr2L 16027437 intron beat-Ic + chr2L 16027498 intron beat-Ic + chr2L_4_16025001 chr2L_16025001 RAL-703 316 chr2L 16059956 16059983 chr2L 16060073 16060099 5 116 1.5 2.5 2.0 1.7 143 chr2L 16059956 intron beat-Ia + chr2L 16060028 intron beat-Ia + chr2L 16060099 intron beat-Ia + chr2L_5_16060001 chr2L_16060001 RAL-703 317 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 16.5 17.0 16.8 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-703 318 chr2L 16115520 16115548 chr2L 16115616 16115644 4 96 1.0 1.5 1.2 1.8 124 chr2L 16115520 intergenic not near genes chr2L 16115582 intergenic not near genes chr2L 16115644 intergenic not near genes chr2L_4_16115001 chr2L_16115001 RAL-703 319 chr2L 16141151 16141193 chr2L 16146378 16146419 copia 10 5226 2.5 4.0 3.2 2.4 5268 chr2L 16141151 intergenic not near genes chr2L 16143785 intergenic not near genes chr2L 16146419 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-703 320 chr2L 16153729 16153737 chr2L 16160811 16160824 297 4 7086 3.5 4.5 4.0 0.8 7095 chr2L 16153729 intergenic not near genes chr2L 16157276 intergenic not near genes chr2L 16160824 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-703 321 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133320 15.0 17.0 16.0 0.2 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-703 322 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 16.5 17.0 16.8 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-703 323 chr2L 16280236 16280285 chr2L 16281427 16281476 1360 16 1188 1.5 5.0 3.2 3.8 1240 chr2L 16280236 intron crp - chr2L 16280856 intron crp - chr2L 16281476 intron crp - chr2L_16_16280001 chr2L_16280001 RAL-703 324 chr2L 16354763 16354786 chr2L 16354875 16354893 4 110 0.5 4.0 2.2 1.2 130 chr2L 16354763 intergenic CaBP1 -,CG4455 + chr2L 16354828 intergenic CaBP1 -,CG4455 + chr2L 16354893 3` UTR CaBP1 - chr2L_4_16350001 chr2L_16350001 RAL-703 325 chr2L 16363926 16363965 chr2L 16364191 16364231 5 264 1.5 1.0 1.2 2.3 305 chr2L 16363926 intergenic not near genes chr2L 16364078 intergenic not near genes chr2L 16364231 intergenic not near genes chr2L_5_16360001 chr2L_16360001 RAL-703 326 chr2L 16365454 16365497 chr2L 16365624 16365680 4 173 0.0 1.5 0.8 2.2 226 chr2L 16365454 intergenic jhamt + chr2L 16365567 intergenic jhamt + chr2L 16365680 intergenic jhamt + chr2L_4_16365001 chr2L_16365001 RAL-703 327 chr2L 16480587 16480638 chr2L 16480694 16480746 17 105 2.5 3.0 2.8 4.5 159 chr2L 16480587 intron dac - chr2L 16480666 intron dac - chr2L 16480746 intron dac - chr2L_17_16480001 chr2L_16480001 RAL-703 328 chr2L 16504979 16505003 chr2L 16505107 16505125 4 127 0.5 5.5 3.0 1.0 146 chr2L 16504979 intron Tpr2 + chr2L 16505052 intron Tpr2 + chr2L 16505125 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-703 329 chr2L 16511963 16511992 chr2L 16519097 16519126 HMS-Beagle 4 7134 3.0 1.0 2.0 1.3 7163 chr2L 16511963 intron CG5953 - chr2L 16515544 intron CG5953 - chr2L 16519126 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-703 330 chr2L 16585767 16585804 chr2L 16585876 16585889 11 106 2.0 1.5 1.8 3.9 122 chr2L 16585767 intron CG42389 + chr2L 16585828 intron CG42389 + chr2L 16585889 intron CG42389 + chr2L_11_16585001 chr2L_16585001 RAL-703 331 chr2L 16694131 16694160 chr2L 16694214 16694263 5 100 3.0 2.5 2.8 1.3 132 chr2L 16694131 intron grp + chr2L 16694197 intron grp + chr2L 16694263 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-703 332 chr2L 16695244 16695278 chr2L 16695348 16695382 6 102 1.5 2.5 2.0 2.0 138 chr2L 16695244 intron grp + chr2L 16695313 intron grp + chr2L 16695382 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-703 333 chr2L 16697052 16697074 chr2L 16697264 16697271 5 210 2.0 0.0 1.0 2.5 219 chr2L 16697052 intron grp + chr2L 16697162 intron grp + chr2L 16697271 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-703 334 chr2L 16703793 16703827 chr2L 16703903 16703937 6 107 4.0 2.5 3.2 1.4 144 chr2L 16703793 intergenic CG31808 - chr2L 16703865 intergenic CG31808 - chr2L 16703937 intergenic CG31808 - chr2L_6_16700001 chr2L_16700001 RAL-703 335 chr2L 16721016 16721055 chr2L 16721110 16721127 7 93 2.5 2.5 2.5 2.0 111 chr2L 16721016 intron Cyt-c-p + chr2L 16721072 intron Cyt-c-p + chr2L 16721127 intron Cyt-c-p + chr2L_7_16720001 chr2L_16720001 RAL-703 336 chr2L 16728920 16728957 chr2L 16729575 16729594 8 647 0.0 1.5 0.8 4.4 674 chr2L 16728920 intergenic not near genes chr2L 16729257 intergenic not near genes chr2L 16729594 intergenic CG31812 + chr2L_8_16725001 chr2L_16725001 RAL-703 337 chr2L 16764954 16764997 chr2L 16765052 16765093 6 99 3.5 3.0 3.2 1.4 139 chr2L 16764954 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765093 intergenic not near genes chr2L_6_16765001 chr2L_16765001 RAL-703 338 chr2L 16767073 16767123 chr2L 16767168 16767219 5 95 1.5 1.0 1.2 2.3 146 chr2L 16767073 intron Mhc + chr2L 16767146 intron Mhc + chr2L 16767219 intron Mhc + chr2L_5_16765001 chr2L_16765001 RAL-703 339 chr2L 16840999 16841045 chr2L 16841093 16841134 9 93 4.0 2.5 3.2 2.1 135 chr2L 16840999 intron,intron SclA +,SclB + chr2L 16841066 intron,intron SclA +,SclB + chr2L 16841134 intron,intron SclA +,SclB + chr2L_9_16840001 chr2L_16840001 RAL-703 340 chr2L 16850539 16850564 chr2L 16850642 16850681 4 104 1.5 2.0 1.8 1.4 142 chr2L 16850539 intron CG31810 - chr2L 16850610 intron CG31810 - chr2L 16850681 intron CG31810 - chr2L_4_16850001 chr2L_16850001 RAL-703 341 chr2L 16867006 16867035 chr2L 16867121 16867150 5 113 2.5 3.5 3.0 1.2 144 chr2L 16867006 intergenic not near genes chr2L 16867078 intergenic not near genes chr2L 16867150 intergenic not near genes chr2L_5_16865001 chr2L_16865001 RAL-703 342 chr2L 16870095 16870141 chr2L 16870511 16870560 12 417 1.0 1.0 1.0 6.0 465 chr2L 16870095 5` UTR CR31781 + chr2L 16870328 5` UTR CR31781 + chr2L 16870560 5` UTR CR31781 + chr2L_12_16870001 chr2L_16870001 RAL-703 343 chr2L 16958092 16958105 chr2L 16962899 16962913 Doc 4 4804 4.0 2.0 3.0 1.0 4821 chr2L 16958092 intergenic not near genes chr2L 16960502 intergenic not near genes chr2L 16962913 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-703 344 chr2L 16958107 16958127 chr2L 16962898 16962911 Doc 5 4800 2.5 2.0 2.2 1.6 4804 chr2L 16958107 intergenic not near genes chr2L 16960509 intergenic not near genes chr2L 16962911 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-703 345 chr2L 16968221 16968242 chr2L 16968328 16968348 5 108 1.5 1.0 1.2 2.3 127 chr2L 16968221 intergenic not near genes chr2L 16968284 intergenic not near genes chr2L 16968348 intergenic not near genes chr2L_5_16965001 chr2L_16965001 RAL-703 346 chr2L 16983207 16983250 chr2L 16983311 16983353 9 101 2.0 3.0 2.5 2.6 146 chr2L 16983207 intron beat-IIIb + chr2L 16983280 intron beat-IIIb + chr2L 16983353 intron beat-IIIb + chr2L_9_16980001 chr2L_16980001 RAL-703 347 chr2L 17018685 17018735 chr2L 17018781 17018831 7 89 1.5 1.0 1.2 3.2 146 chr2L 17018685 intergenic not near genes chr2L 17018758 intergenic not near genes chr2L 17018831 intergenic not near genes chr2L_7_17015001 chr2L_17015001 RAL-703 348 chr2L 17111830 17111858 chr2L 17111948 17111976 4 118 0.5 4.0 2.2 1.2 146 chr2L 17111830 intergenic not near genes chr2L 17111903 intergenic not near genes chr2L 17111976 intergenic not near genes chr2L_4_17110001 chr2L_17110001 RAL-703 349 chr2L 17120821 17120874 chr2L 17120920 17120972 12 93 3.5 3.5 3.5 2.7 151 chr2L 17120821 intergenic not near genes chr2L 17120896 intergenic not near genes chr2L 17120972 intergenic not near genes chr2L_12_17120001 chr2L_17120001 RAL-703 350 chr2L 17158720 17158744 chr2L 17158826 17158866 4 118 4.0 1.0 2.5 1.1 146 chr2L 17158720 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158793 intron,intron CG34106 +,beat-IIIa + chr2L 17158866 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-703 351 chr2L 17226085 17226126 chr2L 17226184 17226224 4 98 2.5 3.0 2.8 1.1 139 chr2L 17226085 intron beat-IIIc - chr2L 17226154 intron beat-IIIc - chr2L 17226224 intron beat-IIIc - chr2L_4_17225001 chr2L_17225001 RAL-703 352 chr2L 17238812 17238859 chr2L 17238917 17238962 5 103 5.0 3.5 4.2 1.0 150 chr2L 17238812 intron beat-IIIc - chr2L 17238887 intron beat-IIIc - chr2L 17238962 intron beat-IIIc - chr2L_5_17235001 chr2L_17235001 RAL-703 353 chr2L 17240550 17240593 chr2L 17240652 17240700 10 104 2.5 1.5 2.0 3.3 150 chr2L 17240550 intron beat-IIIc - chr2L 17240625 intron beat-IIIc - chr2L 17240700 intron beat-IIIc - chr2L_10_17240001 chr2L_17240001 RAL-703 354 chr2L 17243909 17243943 chr2L 17244137 17244171 5 224 2.5 2.0 2.2 1.6 262 chr2L 17243909 intron beat-IIIc - chr2L 17244040 intron beat-IIIc - chr2L 17244171 intron beat-IIIc - chr2L_5_17240001 chr2L_17240001 RAL-703 355 chr2L 17260861 17260882 chr2L 17260964 17260985 5 100 2.0 1.5 1.8 1.8 124 chr2L 17260861 intergenic beat-IIIc - chr2L 17260923 intergenic beat-IIIc - chr2L 17260985 intergenic beat-IIIc - chr2L_5_17260001 chr2L_17260001 RAL-703 356 chr2L 17301613 17301627 chr2L 17301800 17301833 4 192 1.5 4.5 3.0 1.0 220 chr2L 17301613 intergenic not near genes chr2L 17301723 intergenic not near genes chr2L 17301833 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-703 357 chr2L 17424245 17424276 chr2L 17424420 17424453 4 172 2.5 1.5 2.0 1.3 208 chr2L 17424245 intron Dif - chr2L 17424349 intron Dif - chr2L 17424453 intron Dif - chr2L_4_17420001 chr2L_17420001 RAL-703 358 chr2L 17456375 17456429 chr2L 17456487 17456530 4 104 1.0 0.0 0.5 2.7 155 chr2L 17456375 intron CG5050 + chr2L 17456452 intron CG5050 + chr2L 17456530 intron CG5050 + chr2L_4_17455001 chr2L_17455001 RAL-703 359 chr2L 17466952 17466990 chr2L 17467381 17467407 8 428 0.5 3.0 1.8 2.9 455 chr2L 17466952 intron BicD - chr2L 17467180 intron BicD - chr2L 17467407 intron BicD - chr2L_8_17465001 chr2L_17465001 RAL-703 360 chr2L 17511613 17511656 chr2L 17511775 17511818 4 162 2.0 0.5 1.2 1.8 205 chr2L 17511613 intron Dhc36C + chr2L 17511716 intron Dhc36C + chr2L 17511818 intron Dhc36C + chr2L_4_17510001 chr2L_17510001 RAL-703 361 chr2L 17623343 17623398 chr2L 17623444 17623499 6 100 0.0 3.0 1.5 2.4 156 chr2L 17623343 intergenic not near genes chr2L 17623421 intergenic not near genes chr2L 17623499 intergenic not near genes chr2L_6_17620001 chr2L_17620001 RAL-703 362 chr2L 17687500 17687522 chr2L 17692265 17692285 F-element 5 4764 2.5 1.0 1.8 1.8 4785 chr2L 17687500 intron CadN - chr2L 17689892 intron CadN - chr2L 17692285 intron CadN - chr2L_5_17685001 chr2L_17685001 RAL-703 363 chr2L 17727853 17727878 chr2L 17729340 17729344 hobo 5 1483 3.0 4.0 3.5 1.1 1491 chr2L 17727853 intron CadN - chr2L 17728598 intron CadN - chr2L 17729344 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-703 364 chr2L 17755736 17755768 chr2L 17755842 17755875 5 107 3.0 3.0 3.0 1.2 139 chr2L 17755736 intron CadN - chr2L 17755806 intron CadN - chr2L 17755875 intron CadN - chr2L_5_17755001 chr2L_17755001 RAL-703 365 chr2L 17819912 17819937 chr2L 17825123 17825154 copia 6 5216 2.5 2.5 2.5 1.7 5242 chr2L 17819912 intron CadN2 - chr2L 17822533 intron CadN2 - chr2L 17825154 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-703 366 chr2L 17879982 17880029 chr2L 17880089 17880136 10 105 2.5 4.5 3.5 2.2 154 chr2L 17879982 intergenic not near genes chr2L 17880059 intergenic not near genes chr2L 17880136 intergenic not near genes chr2L_10_17880001 chr2L_17880001 RAL-703 367 chr2L 17911945 17911989 chr2L 17914143 17914167 pogo 7 2192 1.0 3.5 2.2 2.2 2222 chr2L 17911945 intergenic not near genes chr2L 17913056 intergenic not near genes chr2L 17914167 intergenic CG43271 - chr2L_7_17910001 chr2L_17910001 RAL-703 368 chr2L 17938676 17938715 chr2L 17938782 17938819 6 101 3.0 0.5 1.8 2.1 143 chr2L 17938676 intergenic CR44399 - chr2L 17938748 intergenic CR44399 - chr2L 17938819 intergenic CR44399 - chr2L_6_17935001 chr2L_17935001 RAL-703 369 chr2L 17951926 17951978 chr2L 17953412 17953459 hobo 7 1482 2.5 5.0 3.8 1.5 1533 chr2L 17951926 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953459 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-703 370 chr2L 18014665 18014693 chr2L 18014796 18014821 6 139 2.0 2.0 2.0 2.0 156 chr2L 18014665 intron rdo + chr2L 18014743 intron rdo + chr2L 18014821 intron rdo + chr2L_6_18010001 chr2L_18010001 RAL-703 371 chr2L 18051863 18051896 chr2L 18061030 18061063 roo 6 9165 2.5 4.0 3.2 1.4 9200 chr2L 18051863 intron rdo + chr2L 18056463 intron rdo + chr2L 18061063 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-703 372 chr2L 18062747 18062791 chr2L 18062913 18062950 8 156 2.0 2.0 2.0 2.7 203 chr2L 18062747 intron rdo + chr2L 18062848 intron rdo + chr2L 18062950 intron rdo + chr2L_8_18060001 chr2L_18060001 RAL-703 373 chr2L 18077186 18077226 chr2L 18077283 18077332 5 101 3.0 3.5 3.2 1.2 146 chr2L 18077186 intergenic not near genes chr2L 18077259 intergenic not near genes chr2L 18077332 intergenic not near genes chr2L_5_18075001 chr2L_18075001 RAL-703 374 chr2L 18110066 18110107 chr2L 18110186 18110226 5 119 1.0 0.5 0.8 2.8 160 chr2L 18110066 intergenic not near genes chr2L 18110146 intergenic not near genes chr2L 18110226 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-703 375 chr2L 18154299 18154345 chr2L 18154405 18154452 15 105 4.5 3.5 4.0 3.0 153 chr2L 18154299 exon CG17681 + chr2L 18154376 exon CG17681 + chr2L 18154452 3` UTR CG17681 + chr2L_15_18150001 chr2L_18150001 RAL-703 376 chr2L 18245502 18245548 chr2L 18245676 18245721 7 170 1.0 3.0 2.0 2.3 219 chr2L 18245502 intron CG42750 - chr2L 18245612 intron CG42750 - chr2L 18245721 intron CG42750 - chr2L_7_18245001 chr2L_18245001 RAL-703 377 chr2L 18442345 18442367 chr2L 18442440 18442466 9 98 3.0 5.5 4.2 1.7 121 chr2L 18442345 3` UTR RpS26 - chr2L 18442406 3` UTR RpS26 - chr2L 18442466 3` UTR RpS26 - chr2L_9_18440001 chr2L_18440001 RAL-703 378 chr2L 18449386 18449412 chr2L 18449487 18449532 4 115 1.5 2.5 2.0 1.3 146 chr2L 18449386 intergenic bsf -,ncm - chr2L 18449459 intergenic bsf - chr2L 18449532 3` UTR bsf - chr2L_4_18445001 chr2L_18445001 RAL-703 379 chr2L 18464774 18464815 chr2L 18464877 18464918 11 102 2.0 3.5 2.8 2.9 144 chr2L 18464774 intron let-7-C + chr2L 18464846 intron let-7-C + chr2L 18464918 intron let-7-C + chr2L_11_18460001 chr2L_18460001 RAL-703 380 chr2L 18561535 18561579 chr2L 18561656 18561700 14 120 3.5 2.5 3.0 3.5 165 chr2L 18561535 intron Pde11 - chr2L 18561618 intron Pde11 - chr2L 18561700 intron Pde11 - chr2L_14_18560001 chr2L_18560001 RAL-703 381 chr2L 18577265 18577296 chr2L 18577454 18577459 5 179 1.5 2.5 2.0 1.7 194 chr2L 18577265 intron Pde11 - chr2L 18577362 intron Pde11 - chr2L 18577459 intron Pde11 - chr2L_5_18575001 chr2L_18575001 RAL-703 382 chr2L 16217660 16217660 chr2L 18622713 18622719 6 2405058 17.0 20.0 18.5 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-703 383 chr2L 18737075 18737088 chr2L 18737216 18737216 4 137 2.0 4.0 3.0 1.0 141 chr2L 18737075 intergenic not near genes chr2L 18737146 intergenic not near genes chr2L 18737216 intergenic not near genes chr2L_4_18735001 chr2L_18735001 RAL-703 384 chr2L 18741896 18741924 chr2L 18742001 18742023 4 102 24.0 16.0 20.0 0.2 127 chr2L 18741896 intergenic not near genes chr2L 18741960 intergenic not near genes chr2L 18742023 intergenic not near genes chr2L_4_18740001 chr2L_18740001 RAL-703 385 chr2L 18755903 18755942 chr2L 18756154 18756193 8 248 4.0 5.5 4.8 1.4 290 chr2L 18755903 intergenic not near genes chr2L 18756048 intergenic not near genes chr2L 18756193 intergenic not near genes chr2L_8_18755001 chr2L_18755001 RAL-703 386 chr2L 18811650 18811687 chr2L 18811879 18811898 9 224 2.5 1.5 2.0 3.0 248 chr2L 18811650 intergenic not near genes chr2L 18811774 intergenic not near genes chr2L 18811898 intergenic not near genes chr2L_9_18810001 chr2L_18810001 RAL-703 387 chr2L 18812559 18812587 chr2L 18812842 18812862 4 278 1.5 6.0 3.8 0.8 303 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812710 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812862 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-703 388 chr2L 18824354 18824393 chr2L 18827239 18827264 5 2879 19.5 14.0 16.8 0.3 2910 chr2L 18824354 exon CG17323 + chr2L 18825809 exon CG17323 + chr2L 18827264 intron CG17322 + chr2L_5_18825001 chr2L_18825001 RAL-703 389 chr2L 18898393 18898422 chr2L 18898485 18898523 5 100 2.0 1.0 1.5 2.0 130 chr2L 18898393 intergenic not near genes chr2L 18898458 intergenic not near genes chr2L 18898523 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-703 390 chr2L 18902609 18902655 chr2L 18902907 18902954 14 296 1.5 2.0 1.8 5.0 345 chr2L 18902609 intergenic not near genes chr2L 18902782 intergenic not near genes chr2L 18902954 intergenic not near genes chr2L_14_18900001 chr2L_18900001 RAL-703 391 chr2L 18926568 18926584 chr2L 18926690 18926710 4 123 0.5 2.0 1.2 1.8 142 chr2L 18926568 intron ssp3 - chr2L 18926639 intron ssp3 - chr2L 18926710 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-703 392 chr2L 19024096 19024097 chr2L 21768291 21768291 5 2744194 12.5 14.5 13.5 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-703 393 chr2L 19147357 19147403 chr2L 19154412 19154458 297 5 7047 6.0 6.0 6.0 0.7 7101 chr2L 19147357 intron brat + chr2L 19150908 intron brat + chr2L 19154458 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-703 394 chr2L 19163351 19163398 chr2L 19163452 19163499 18 96 3.0 3.0 3.0 4.5 148 chr2L 19163351 intron brat + chr2L 19163425 intron brat + chr2L 19163499 intron brat + chr2L_18_19160001 chr2L_19160001 RAL-703 395 chr2L 19189961 19190001 chr2L 19190124 19190168 7 170 1.5 4.0 2.8 1.8 207 chr2L 19189961 intergenic pigeon +,drl + chr2L 19190064 intergenic pigeon +,drl + chr2L 19190168 intergenic drl +,pigeon + chr2L_7_19190001 chr2L_19190001 RAL-703 396 chr2L 19199653 19199667 chr2L 19199750 19199763 8 96 6.5 3.0 4.8 1.4 110 chr2L 19199653 intron drl + chr2L 19199708 intron drl + chr2L 19199763 intron drl + chr2L_8_19195001 chr2L_19195001 RAL-703 397 chr2L 19199676 19199700 chr2L 19199749 19199780 7 82 3.0 3.5 3.2 1.7 104 chr2L 19199676 intron drl + chr2L 19199728 intron drl + chr2L 19199780 intron drl + chr2L_7_19195001 chr2L_19195001 RAL-703 398 chr2L 19209596 19209648 chr2L 19209701 19209753 5 101 3.5 3.5 3.5 1.1 157 chr2L 19209596 intergenic not near genes chr2L 19209674 intergenic not near genes chr2L 19209753 intergenic not near genes chr2L_5_19205001 chr2L_19205001 RAL-703 399 chr2L 19220100 19220135 chr2L 19220225 19220275 9 134 2.0 2.5 2.2 2.8 175 chr2L 19220100 intergenic not near genes chr2L 19220188 intergenic not near genes chr2L 19220275 intergenic not near genes chr2L_9_19220001 chr2L_19220001 RAL-703 400 chr2L 19345012 19345046 chr2L 19357227 19357274 blood 4 12223 3.5 3.5 3.5 0.9 12262 chr2L 19345012 intron dnt - chr2L 19351143 intron dnt - chr2L 19357274 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-703 401 chr2L 19357526 19357568 chr2L 19357636 19357675 6 109 4.5 3.0 3.8 1.2 149 chr2L 19357526 intron dnt - chr2L 19357600 intron dnt - chr2L 19357675 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-703 402 chr2L 19374476 19374514 chr2L 19374605 19374642 7 126 2.5 2.0 2.2 2.2 166 chr2L 19374476 intergenic not near genes chr2L 19374559 intergenic not near genes chr2L 19374642 intergenic not near genes chr2L_7_19370001 chr2L_19370001 RAL-703 403 chr2L 19407703 19407736 chr2L 19407916 19407953 6 214 2.5 2.0 2.2 1.9 250 chr2L 19407703 intron Pax - chr2L 19407828 intron Pax - chr2L 19407953 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-703 404 chr2L 19441066 19441088 chr2L 19441163 19441184 4 97 1.5 5.0 3.2 1.0 118 chr2L 19441066 intron CG10237 - chr2L 19441125 intron CG10237 - chr2L 19441184 5` UTR CG10237 - chr2L_4_19440001 chr2L_19440001 RAL-703 405 chr2L 19559990 19560032 chr2L 19560263 19560303 5 269 1.5 3.0 2.2 1.6 313 chr2L 19559990 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560303 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-703 406 chr2L 19560836 19560854 chr2L 19560918 19560935 8 94 2.5 0.0 1.2 3.6 99 chr2L 19560836 intron Tep5 + chr2L 19560886 exon Tep5 + chr2L 19560935 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-703 407 chr2L 19561322 19561363 chr2L 19561484 19561523 6 158 1.5 1.5 1.5 2.4 201 chr2L 19561322 exon Tep5 + chr2L 19561422 exon Tep5 + chr2L 19561523 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-703 408 chr2L 19601561 19601597 chr2L 19601658 19601692 6 94 2.5 4.0 3.2 1.4 131 chr2L 19601561 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601692 intron,intron Lar +,CR44978 - chr2L_6_19600001 chr2L_19600001 RAL-703 409 chr2L 19620079 19620125 chr2L 19621087 19621127 jockey 14 1007 3.0 5.0 4.0 2.8 1048 chr2L 19620079 intron Lar + chr2L 19620603 intron Lar + chr2L 19621127 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-703 410 chr2L 19652554 19652569 chr2L 19674007 19674008 opus 4 21450 6.0 4.0 5.0 0.7 21454 chr2L 19652554 intron Lar + chr2L 19663281 intron Lar + chr2L 19674008 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-703 411 chr2L 19689050 19689076 chr2L 19689171 19689200 4 123 4.5 4.0 4.2 0.8 150 chr2L 19689050 intron Lar + chr2L 19689125 intron Lar + chr2L 19689200 intron Lar + chr2L_4_19685001 chr2L_19685001 RAL-703 412 chr2L 19697121 19697162 chr2L 19697232 19697254 12 109 3.0 2.0 2.5 3.4 133 chr2L 19697121 intron Lar + chr2L 19697188 intron Lar + chr2L 19697254 intron Lar + chr2L_12_19695001 chr2L_19695001 RAL-703 413 chr2L 19703517 19703563 chr2L 19712673 19712717 roo 13 9149 2.5 2.5 2.5 3.7 9200 chr2L 19703517 intron Lar + chr2L 19708117 intron Lar + chr2L 19712717 intron Lar + chr2L_13_19705001 chr2L_19705001 RAL-703 414 chr2L 19712710 19712721 chr2L 19712771 19712794 4 85 1.0 3.0 2.0 1.3 84 chr2L 19712710 intron Lar + chr2L 19712752 intron Lar + chr2L 19712794 intron Lar + chr2L_4_19710001 chr2L_19710001 RAL-703 415 chr2L 19737346 19737386 chr2L 19740832 19740874 1360 8 3482 2.5 2.0 2.2 2.5 3528 chr2L 19737346 intergenic Nf-YB + chr2L 19739110 intergenic not near genes chr2L 19740874 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-703 416 chr2L 19762793 19762827 chr2L 19763054 19763089 pogo 11 259 2.0 1.5 1.8 3.9 296 chr2L 19762793 5` UTR fbp - chr2L 19762941 intron fbp - chr2L 19763089 intron fbp - chr2L_11_19760001 chr2L_19760001 RAL-703 417 chr2L 19773165 19773189 chr2L 19773264 19773296 7 106 3.5 1.0 2.2 2.2 131 chr2L 19773165 intergenic not near genes chr2L 19773230 intergenic not near genes chr2L 19773296 intergenic not near genes chr2L_7_19770001 chr2L_19770001 RAL-703 418 chr2L 19935226 19935258 chr2L 19935323 19935340 4 88 4.0 4.5 4.2 0.8 114 chr2L 19935226 intron sick + chr2L 19935283 intron sick + chr2L 19935340 intron sick + chr2L_4_19935001 chr2L_19935001 RAL-703 419 chr2L 19941493 19941519 chr2L 19941602 19941628 4 109 2.5 2.0 2.2 1.2 135 chr2L 19941493 intron sick + chr2L 19941560 intron sick + chr2L 19941628 intron sick + chr2L_4_19940001 chr2L_19940001 RAL-703 420 chr2L 19994641 19994687 chr2L 19994731 19994787 9 89 0.5 3.0 1.8 3.2 146 chr2L 19994641 intron CG43861 - chr2L 19994714 intron CG43861 - chr2L 19994787 intron CG43861 - chr2L_9_19990001 chr2L_19990001 RAL-703 421 chr2L 20000028 20000074 chr2L 20000136 20000183 11 103 1.5 1.5 1.5 4.4 155 chr2L 20000028 intron CG43861 - chr2L 20000106 intron CG43861 - chr2L 20000183 intron,3` UTR CG43861 -,CR44908 - chr2L_11_20000001 chr2L_20000001 RAL-703 422 chr2L 20005860 20005903 chr2L 20010946 20010989 flea 9 5092 2.5 3.0 2.8 2.4 5129 chr2L 20005860 intron CG43861 - chr2L 20008424 intron CG43861 - chr2L 20010989 intron CG43861 - chr2L_9_20005001 chr2L_20005001 RAL-703 423 chr2L 20022070 20022095 chr2L 20022202 20022228 6 133 5.0 2.0 3.5 1.3 158 chr2L 20022070 intergenic not near genes chr2L 20022149 intergenic not near genes chr2L 20022228 intergenic not near genes chr2L_6_20020001 chr2L_20020001 RAL-703 424 chr2L 20124312 20124352 chr2L 20124409 20124450 4 97 3.5 2.0 2.8 1.1 138 chr2L 20124312 intergenic not near genes chr2L 20124381 intergenic not near genes chr2L 20124450 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-703 425 chr2L 20272096 20272142 chr2L 20282827 20282858 copia 13 10729 6.0 1.5 3.8 2.7 10762 chr2L 20272096 intergenic not near genes chr2L 20277477 intergenic not near genes chr2L 20282858 intergenic not near genes chr2L_13_20275001 chr2L_20275001 RAL-703 426 chr2L 20296490 20296537 chr2L 20296590 20296622 12 96 0.5 1.0 0.8 6.7 132 chr2L 20296490 intergenic CR43414 - chr2L 20296556 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_12_20295001 chr2L_20295001 RAL-703 427 chr2L 20367535 20367569 chr2L 20367692 20367725 6 156 2.5 5.0 3.8 1.2 190 chr2L 20367535 intergenic not near genes chr2L 20367630 intergenic not near genes chr2L 20367725 intergenic not near genes chr2L_6_20365001 chr2L_20365001 RAL-703 428 chr2L 20372209 20372255 chr2L 20372479 20372514 pogo 5 268 0.0 5.5 2.8 1.3 305 chr2L 20372209 intergenic Ugt37a1 - chr2L 20372362 intergenic Ugt37a1 - chr2L 20372514 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-703 429 chr2L 20372837 20372873 chr2L 20372935 20372972 11 94 2.5 2.5 2.5 3.1 135 chr2L 20372837 exon Ugt37a1 - chr2L 20372904 exon Ugt37a1 - chr2L 20372972 exon Ugt37a1 - chr2L_11_20370001 chr2L_20370001 RAL-703 430 chr2L 20498671 20498706 chr2L 20498789 20498813 7 115 4.5 3.5 4.0 1.4 142 chr2L 20498671 intergenic not near genes chr2L 20498742 intergenic not near genes chr2L 20498813 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-703 431 chr2L 20500395 20500436 chr2L 20500495 20500535 6 99 4.0 2.5 3.2 1.4 140 chr2L 20500395 intergenic not near genes chr2L 20500465 intergenic not near genes chr2L 20500535 intergenic not near genes chr2L_6_20500001 chr2L_20500001 RAL-703 432 chr2L 20568661 20568681 chr2L 20569062 20569091 X-element 5 407 2.5 3.5 3.0 1.2 430 chr2L 20568661 intron CR45347 + chr2L 20568876 intron CR45347 + chr2L 20569091 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-703 433 chr2L 20576201 20576245 chr2L 20583688 20583733 blood 7 7487 2.5 0.5 1.5 2.8 7532 chr2L 20576201 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583733 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-703 434 chr2L 20668672 20668714 chr2L 20668767 20668798 11 93 3.0 3.5 3.2 2.6 126 chr2L 20668672 intron CG31678 - chr2L 20668735 intron CG31678 - chr2L 20668798 intron CG31678 - chr2L_11_20665001 chr2L_20665001 RAL-703 435 chr2L 20669941 20669993 chr2L 20670041 20670093 9 99 2.0 2.5 2.2 2.8 152 chr2L 20669941 intron CG31678 - chr2L 20670017 intron CG31678 - chr2L 20670093 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-703 436 chr2L 20674811 20674861 chr2L 20674916 20674959 9 99 2.0 0.0 1.0 4.5 148 chr2L 20674811 intron CG31678 - chr2L 20674885 intron CG31678 - chr2L 20674959 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-703 437 chr2L 20778229 20778262 chr2L 20778315 20778365 8 99 3.0 2.5 2.8 2.1 136 chr2L 20778229 intron cad + chr2L 20778297 intron cad + chr2L 20778365 intron cad + chr2L_8_20775001 chr2L_20775001 RAL-703 438 chr2L 20818495 20818534 chr2L 20818596 20818635 6 99 4.0 1.0 2.5 1.7 140 chr2L 20818495 exon CheB38a - chr2L 20818565 intergenic CheB38a - chr2L 20818635 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-703 439 chr2L 20840021 20840057 chr2L 20840236 20840288 10 228 2.5 5.0 3.8 2.1 267 chr2L 20840021 intergenic not near genes chr2L 20840154 intergenic not near genes chr2L 20840288 intergenic CG31676 + chr2L_10_20840001 chr2L_20840001 RAL-703 440 chr2L 20906806 20906839 chr2L 20907008 20907042 11 200 4.0 3.0 3.5 2.4 236 chr2L 20906806 intron,intron CG43739 -,sky - chr2L 20906924 intron,intron CG43739 -,sky - chr2L 20907042 intron,intron CG43739 -,sky - chr2L_11_20905001 chr2L_20905001 RAL-703 441 chr2L 20946927 20946943 chr2L 20947033 20947045 6 106 5.0 3.5 4.2 1.2 118 chr2L 20946927 intergenic CR44606 - chr2L 20946986 intergenic CR44606 - chr2L 20947045 intergenic CR44606 - chr2L_6_20945001 chr2L_20945001 RAL-703 442 chr2L 20967064 20967107 chr2L 20967170 20967211 5 106 1.0 4.5 2.8 1.3 147 chr2L 20967064 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967211 3` UTR CG42238 - chr2L_5_20965001 chr2L_20965001 RAL-703 443 chr2L 20976640 20976668 chr2L 20981458 20981483 X-element 5 4827 4.0 1.0 2.5 1.4 4843 chr2L 20976640 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-703 444 chr2L 20984719 20984772 chr2L 20984829 20984884 11 111 4.0 2.0 3.0 2.8 165 chr2L 20984719 intron CG42238 - chr2L 20984802 intron CG42238 - chr2L 20984884 intron CG42238 - chr2L_11_20980001 chr2L_20980001 RAL-703 445 chr2L 20986886 20986934 chr2L 20987243 20987275 13 352 3.5 4.0 3.8 2.7 389 chr2L 20986886 intron CG42238 - chr2L 20987080 intron CG42238 - chr2L 20987275 intron CG42238 - chr2L_13_20985001 chr2L_20985001 RAL-703 446 chr2L 20991018 20991062 chr2L 20991116 20991159 8 94 2.5 4.5 3.5 1.8 141 chr2L 20991018 intron CG42238 - chr2L 20991088 intron CG42238 - chr2L 20991159 intron CG42238 - chr2L_8_20990001 chr2L_20990001 RAL-703 447 chr2L 21020256 21020309 chr2L 21023953 21023983 NOF 12 3688 3.5 2.0 2.8 3.2 3727 chr2L 21020256 intron CG42238 - chr2L 21022120 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-703 448 chr2L 21041119 21041167 chr2L 21049400 21049421 Tirant 12 8275 2.0 1.5 1.8 4.3 8302 chr2L 21041119 intron CG42238 - chr2L 21045270 intron CG42238 - chr2L 21049421 intron CG42238 - chr2L_12_21045001 chr2L_21045001 RAL-703 449 chr2L 21074924 21074949 chr2L 21075024 21075056 4 104 1.5 1.0 1.2 1.8 132 chr2L 21074924 intergenic tadr + chr2L 21074990 intergenic tadr + chr2L 21075056 intergenic tadr + chr2L_4_21070001 chr2L_21070001 RAL-703 450 chr2L 21113670 21113715 chr2L 21113783 21113828 8 112 2.5 1.5 2.0 2.7 158 chr2L 21113670 intron Nhe2 + chr2L 21113749 intron Nhe2 + chr2L 21113828 intron Nhe2 + chr2L_8_21110001 chr2L_21110001 RAL-703 451 chr2L 21199207 21199255 chr2L 21199304 21199329 15 91 3.5 3.0 3.2 3.6 122 chr2L 21199207 intergenic CG31624 -,Ret - chr2L 21199268 3` UTR CG31624 - chr2L 21199329 3` UTR CG31624 - chr2L_15_21195001 chr2L_21195001 RAL-703 452 chr2L 21218958 21219007 chr2L 21219252 21219301 11 290 2.5 1.5 2.0 3.7 343 chr2L 21218958 intron Atg18b - chr2L 21219130 intron Atg18b - chr2L 21219301 intron Atg18b - chr2L_11_21215001 chr2L_21215001 RAL-703 453 chr2L 21246528 21246541 chr2L 21246618 21246656 5 104 3.5 5.5 4.5 0.9 128 chr2L 21246528 intron Hr39 + chr2L 21246592 intron Hr39 + chr2L 21246656 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-703 454 chr2L 21267018 21267037 chr2L 21267155 21267164 4 133 1.5 0.5 1.0 2.0 146 chr2L 21267018 intron CG8671 + chr2L 21267091 intron CG8671 + chr2L 21267164 intron CG8671 + chr2L_4_21265001 chr2L_21265001 RAL-703 455 chr2L 21274250 21274287 chr2L 21274348 21274375 5 94 4.0 5.0 4.5 0.9 125 chr2L 21274250 exon CG8671 + chr2L 21274312 exon CG8671 + chr2L 21274375 exon CG8671 + chr2L_5_21270001 chr2L_21270001 RAL-703 456 chr2L 21286593 21286624 chr2L 21286691 21286723 6 98 3.0 2.0 2.5 1.7 130 chr2L 21286593 exon Mio - chr2L 21286658 intron Mio - chr2L 21286723 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-703 457 chr2L 21323408 21323436 chr2L 21323516 21323544 4 108 2.0 4.0 3.0 1.0 136 chr2L 21323408 intergenic not near genes chr2L 21323476 intergenic not near genes chr2L 21323544 intergenic not near genes chr2L_4_21320001 chr2L_21320001 RAL-703 458 chr2L 21333608 21333633 chr2L 21333767 21333783 4 160 1.0 2.5 1.8 1.4 175 chr2L 21333608 intron dimm + chr2L 21333696 intron dimm + chr2L 21333783 intron dimm + chr2L_4_21330001 chr2L_21330001 RAL-703 459 chr2L 21355592 21355629 chr2L 21355758 21355794 4 165 3.5 2.0 2.8 1.1 202 chr2L 21355592 exon Tsp39D + chr2L 21355693 intron Tsp39D + chr2L 21355794 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-703 460 chr2L 21691808 21691835 chr2L 21698295 21698325 Burdock 5 6483 4.5 0.5 2.5 1.4 6517 chr2L 21691808 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698325 intron CG31619 + chr2L_5_21695001 chr2L_21695001 RAL-703 461 chr2L 21771224 21771258 chr2L 21771351 21771364 8 122 6.0 7.5 6.8 1.0 140 chr2L 21771224 intron CG31612 - chr2L 21771294 intron CG31612 - chr2L 21771364 intron CG31612 - chr2L_8_21770001 chr2L_21770001 RAL-703 462 chr2L 21787615 21787662 chr2L 21787716 21787749 9 100 2.5 0.5 1.5 3.6 134 chr2L 21787615 intron CG31612 - chr2L 21787682 intron CG31612 - chr2L 21787749 intron CG31612 - chr2L_9_21785001 chr2L_21785001 RAL-703 463 chr2L 21825148 21825174 chr2L 21825592 21825628 4 448 3.0 2.5 2.8 1.1 480 chr2L 21825148 intergenic not near genes chr2L 21825388 intergenic not near genes chr2L 21825628 intergenic not near genes chr2L_4_21825001 chr2L_21825001 RAL-703 464 chr2L 21898832 21898869 chr2L 21898980 21899017 10 147 5.0 3.5 4.2 1.9 185 chr2L 21898832 intergenic not near genes chr2L 21898924 intergenic not near genes chr2L 21899017 intergenic not near genes chr2L_10_21895001 chr2L_21895001 RAL-703 465 chr2L 21981664 21981701 chr2L 21990849 21990881 roo 8 9184 3.0 2.5 2.8 2.1 9217 chr2L 21981664 exon CG2528 - chr2L 21986272 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-703 466 chr2L 22025816 22025848 chr2L 22025913 22025943 6 94 1.0 2.0 1.5 2.4 127 chr2L 22025816 intergenic tio + chr2L 22025880 intergenic tio + chr2L 22025943 intergenic tio + chr2L_6_22025001 chr2L_22025001 RAL-703 467 chr2L 22543593 22543643 chr2L 22548564 22548597 7 4962 22.0 10.5 16.2 0.4 5004 chr2L 22543593 intron CG17490 + chr2L 22546095 intron CG17490 + chr2L 22548597 intergenic CG17490 + chr2L_7_22545001 chr2L_22545001 RAL-703 468 chr2L 22581971 22582002 chr2L 22583758 22583807 S-element 7 1803 1.0 3.0 2.0 2.3 1836 chr2L 22581971 intron CG17494 + chr2L 22582889 intron CG17494 + chr2L 22583807 intron CG17494 + chr2L_7_22580001 chr2L_22580001 RAL-703 469 chr2L 22941229 22941278 chr2L 22941329 22941367 5 99 1.5 3.5 2.5 1.4 138 chr2L 22941229 3` UTR lt + chr2L 22941298 3` UTR lt + chr2L 22941367 3` UTR lt + chr2L_5_22940001 chr2L_22940001 RAL-703 470 chr2L 23006505 23006522 chr2L 23007182 23007217 Osvaldo 5 690 3.0 2.5 2.8 1.3 712 chr2L 23006505 intron Cht3 - chr2L 23006861 intron Cht3 - chr2L 23007217 intron Cht3 - chr2L_5_23005001 chr2L_23005001 RAL-703 471 chr2L 23168873 23168882 chr2L 23168969 23168977 4 96 4.0 3.0 3.5 0.9 104 chr2L 23168873 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168925 intron CG12567 - chr2L 23168977 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-703 472 chr2R 529332 529347 chr2R 537976 537991 Max-element 4 8644 3.0 5.0 4.0 0.8 8659 chr2R 529332 intron CG40378 + chr2R 533662 intron CG40378 + chr2R 537991 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-703 473 chr2R 552756 552767 chr2R 553973 553983 1360 4 1222 2.5 1.0 1.8 1.4 1227 chr2R 552756 intron CG40378 + chr2R 553370 intron CG40378 + chr2R 553983 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-703 474 chr2R 1082374 1082382 chr2R 1087132 1087178 Doc 4 4777 3.5 3.5 3.5 0.9 4804 chr2R 1082374 intron rl + chr2R 1084776 intron rl + chr2R 1087178 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-703 475 chr2R 1516586 1516596 chr2R 1521334 1521344 1731 7 4748 9.5 3.5 6.5 0.9 4758 chr2R 1516586 exon Maf1 - chr2R 1518965 intron Maf1 - chr2R 1521344 5` UTR Maf1 - chr2R_7_1515001 chr2R_1515001 RAL-703 476 chr2R 2015118 2015165 chr2R 2015215 2015259 6 93 2.0 0.5 1.2 2.7 141 chr2R 2015118 intron CG17684 - chr2R 2015188 intron CG17684 - chr2R 2015259 intron CG17684 - chr2R_6_2015001 chr2R_2015001 RAL-703 477 chr2R 2498970 2499011 chr2R 2508135 2508161 roo 7 9163 1.5 3.0 2.2 2.2 9191 chr2R 2498970 intron MFS17 - chr2R 2503566 intron MFS17 - chr2R 2508161 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-703 478 chr2R 2508310 2508329 chr2R 2508468 2508485 4 158 4.0 3.0 3.5 0.9 175 chr2R 2508310 intron MFS17 - chr2R 2508398 intron MFS17 - chr2R 2508485 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-703 479 chr2R 3144067 3144105 chr2R 3393365 3393403 Doc 5 249298 9.5 13.5 11.5 0.4 249336 chr2R 3144067 intron CG42596 + chr2R 3268735 intergenic not near genes chr2R 3393403 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-703 480 chr2R 3532608 3532633 chr2R 3536071 3536096 Doc 6 3461 0.0 1.5 0.8 3.3 3488 chr2R 3532608 intergenic not near genes chr2R 3534352 intergenic not near genes chr2R 3536096 intergenic not near genes chr2R_6_3530001 chr2R_3530001 RAL-703 481 chr2R 4296472 4296488 chr2R 4297907 4297926 4 1440 1.5 2.5 2.0 1.3 1454 chr2R 4296472 intergenic not near genes chr2R 4297199 intergenic not near genes chr2R 4297926 intergenic not near genes chr2R_4_4295001 chr2R_4295001 RAL-703 482 chr2R 4604559 4604575 chr2R 4604629 4604640 8 86 2.5 3.5 3.0 2.0 81 chr2R 4604559 intron p120ctn + chr2R 4604600 intron p120ctn + chr2R 4604640 intron p120ctn + chr2R_8_4600001 chr2R_4600001 RAL-703 483 chr2R 4622944 4622979 chr2R 4624114 4624158 1360 8 1174 4.5 2.0 3.2 1.9 1214 chr2R 4622944 intergenic CR44101 - chr2R 4623551 intergenic not near genes chr2R 4624158 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-703 484 chr2R 4656786 4656799 chr2R 4656893 4656909 5 114 4.5 1.0 2.8 1.3 123 chr2R 4656786 intergenic not near genes chr2R 4656848 intergenic not near genes chr2R 4656909 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-703 485 chr2R 4656802 4656814 chr2R 4656891 4656938 4 100 3.0 0.5 1.8 1.4 136 chr2R 4656802 intergenic not near genes chr2R 4656870 intergenic not near genes chr2R 4656938 intergenic not near genes chr2R_4_4655001 chr2R_4655001 RAL-703 486 chr2R 5144982 5145015 chr2R 5145226 5145272 6 258 1.0 0.0 0.5 4.0 290 chr2R 5144982 intron Atf6 + chr2R 5145127 intron Atf6 + chr2R 5145272 intron Atf6 + chr2R_6_5145001 chr2R_5145001 RAL-703 487 chr2R 5179947 5179970 chr2R 5180100 5180123 6 150 3.0 0.5 1.8 2.1 176 chr2R 5179947 intron Nipped-A - chr2R 5180035 intron Nipped-A - chr2R 5180123 intron Nipped-A - chr2R_6_5180001 chr2R_5180001 RAL-703 488 chr2R 5209789 5209817 chr2R 5210330 5210357 6 542 3.0 1.0 2.0 2.0 568 chr2R 5209789 intron Nipped-A - chr2R 5210073 intron Nipped-A - chr2R 5210357 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-703 489 chr2R 5266100 5266150 chr2R 5266203 5266252 9 100 35.0 35.5 35.2 0.2 152 chr2R 5266100 intron d4 + chr2R 5266176 intron d4 + chr2R 5266252 intron d4 + chr2R_9_5265001 chr2R_5265001 RAL-703 490 chr2R 5363501 5363516 chr2R 5363585 5363614 4 94 0.5 3.5 2.0 1.3 113 chr2R 5363501 intron CR42646 + chr2R 5363558 intron CR42646 + chr2R 5363614 intron CR42646 + chr2R_4_5360001 chr2R_5360001 RAL-703 491 chr2R 5460518 5460550 chr2R 5460625 5460655 7 103 2.5 2.5 2.5 2.0 137 chr2R 5460518 intergenic not near genes chr2R 5460586 intergenic not near genes chr2R 5460655 intergenic not near genes chr2R_7_5460001 chr2R_5460001 RAL-703 492 chr2R 5712317 5712341 chr2R 5712400 5712420 6 91 1.5 4.0 2.8 1.6 103 chr2R 5712317 intron ap - chr2R 5712368 intron ap - chr2R 5712420 intron ap - chr2R_6_5710001 chr2R_5710001 RAL-703 493 chr2R 5724978 5725022 chr2R 5725224 5725272 4 244 1.0 1.5 1.2 1.8 294 chr2R 5724978 intron ap - chr2R 5725125 intron ap - chr2R 5725272 intron ap - chr2R_4_5725001 chr2R_5725001 RAL-703 494 chr2R 5731360 5731380 chr2R 5731447 5731458 5 88 6.0 0.0 3.0 1.2 98 chr2R 5731360 intergenic not near genes chr2R 5731409 intergenic not near genes chr2R 5731458 intergenic not near genes chr2R_5_5730001 chr2R_5730001 RAL-703 495 chr2R 5746101 5746146 chr2R 5746204 5746252 4 103 2.0 2.5 2.2 1.2 151 chr2R 5746101 intergenic not near genes chr2R 5746176 intergenic not near genes chr2R 5746252 intergenic not near genes chr2R_4_5745001 chr2R_5745001 RAL-703 496 chr2R 5766178 5766209 chr2R 5766380 5766395 4 198 6.5 0.5 3.5 0.9 217 chr2R 5766178 exon Gp210 + chr2R 5766286 intron Gp210 + chr2R 5766395 intron Gp210 + chr2R_4_5765001 chr2R_5765001 RAL-703 497 chr2R 5772500 5772731 chr2R 5772597 5772850 11 110 1.5 1.0 1.2 5.0 350 chr2R 5772500 3` UTR Gp210 + chr2R 5772675 3` UTR Gp210 + chr2R 5772850 3` UTR Gp210 + chr2R_11_5770001 chr2R_5770001 RAL-703 498 chr2R 5800242 5800273 chr2R 5800351 5800384 9 104 2.0 2.0 2.0 3.0 142 chr2R 5800242 intergenic not near genes chr2R 5800313 intergenic not near genes chr2R 5800384 intergenic not near genes chr2R_9_5800001 chr2R_5800001 RAL-703 499 chr2R 5869254 5869298 chr2R 5874350 5874394 flea 8 5094 3.0 1.5 2.2 2.5 5140 chr2R 5869254 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874394 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-703 500 chr2R 5897020 5897038 chr2R 5897094 5897107 5 78 2.5 5.0 3.8 1.0 87 chr2R 5897020 intron CG43366 + chr2R 5897064 intron CG43366 + chr2R 5897107 intron CG43366 + chr2R_5_5895001 chr2R_5895001 RAL-703 501 chr2R 6016779 6016799 chr2R 6016876 6016902 5 102 0.5 1.5 1.0 2.5 123 chr2R 6016779 intergenic not near genes chr2R 6016840 intergenic not near genes chr2R 6016902 intergenic not near genes chr2R_5_6015001 chr2R_6015001 RAL-703 502 chr2R 6096700 6096751 chr2R 6101913 6101934 BS 8 5205 2.0 4.5 3.2 1.9 5234 chr2R 6096700 intron EcR - chr2R 6099317 intron EcR - chr2R 6101934 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-703 503 chr2R 6129326 6129343 chr2R 6129424 6129440 4 94 5.5 6.0 5.8 0.6 114 chr2R 6129326 intron EcR - chr2R 6129383 intron EcR - chr2R 6129440 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-703 504 chr2R 6129348 6129355 chr2R 6129404 6129453 6 80 4.5 2.0 3.2 1.4 105 chr2R 6129348 intron EcR - chr2R 6129400 intron EcR - chr2R 6129453 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-703 505 chr2R 6168181 6168226 chr2R 6168283 6168316 10 98 2.0 3.5 2.8 2.6 135 chr2R 6168181 intron EcR - chr2R 6168248 intron EcR - chr2R 6168316 intron EcR - chr2R_10_6165001 chr2R_6165001 RAL-703 506 chr2R 6178101 6178145 chr2R 6178247 6178290 5 145 2.0 2.0 2.0 1.7 189 chr2R 6178101 intergenic not near genes chr2R 6178196 intergenic not near genes chr2R 6178290 intergenic not near genes chr2R_5_6175001 chr2R_6175001 RAL-703 507 chr2R 6494519 6494544 chr2R 6499301 6499326 F-element 6 4779 3.0 1.5 2.2 1.9 4807 chr2R 6494519 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499326 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-703 508 chr2R 6541064 6541090 chr2R 6541155 6541183 12 93 1.0 3.0 2.0 4.0 119 chr2R 6541064 intron jing + chr2R 6541124 intron jing + chr2R 6541183 intron jing + chr2R_12_6540001 chr2R_6540001 RAL-703 509 chr2R 6541092 6541105 chr2R 6541147 6541189 5 82 0.5 2.0 1.2 2.3 97 chr2R 6541092 intron jing + chr2R 6541140 intron jing + chr2R 6541189 intron jing + chr2R_5_6540001 chr2R_6540001 RAL-703 510 chr2R 6551975 6552017 chr2R 6552097 6552138 5 121 3.5 4.0 3.8 1.0 163 chr2R 6551975 intron jing + chr2R 6552056 intron jing + chr2R 6552138 intron jing + chr2R_5_6550001 chr2R_6550001 RAL-703 511 chr2R 6579770 6579800 chr2R 6584875 6584906 flea 4 5106 2.0 2.0 2.0 1.3 5136 chr2R 6579770 intron jing + chr2R 6582338 intron jing + chr2R 6584906 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-703 512 chr2R 6612116 6612156 chr2R 6612213 6612256 7 97 2.0 1.5 1.8 2.5 140 chr2R 6612116 intron jing + chr2R 6612186 intron jing + chr2R 6612256 intron jing + chr2R_7_6610001 chr2R_6610001 RAL-703 513 chr2R 6633176 6633212 chr2R 6633273 6633309 4 97 5.0 2.5 3.8 0.8 133 chr2R 6633176 intergenic Vha16-1 -,Trap1 - chr2R 6633242 intergenic Vha16-1 -,Trap1 - chr2R 6633309 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-703 514 chr2R 6646784 6646807 chr2R 6647075 6647097 4 292 3.0 3.0 3.0 1.0 313 chr2R 6646784 intergenic not near genes chr2R 6646940 intergenic not near genes chr2R 6647097 intergenic not near genes chr2R_4_6645001 chr2R_6645001 RAL-703 515 chr2R 6846281 6846326 chr2R 6846633 6846677 4 352 2.5 3.0 2.8 1.1 396 chr2R 6846281 intergenic not near genes chr2R 6846479 intergenic not near genes chr2R 6846677 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-703 516 chr2R 6857078 6857099 chr2R 6857197 6857239 5 135 4.0 3.5 3.8 1.0 161 chr2R 6857078 intergenic not near genes chr2R 6857158 intergenic not near genes chr2R 6857239 intergenic not near genes chr2R_5_6855001 chr2R_6855001 RAL-703 517 chr2R 6914674 6914714 chr2R 6914780 6914781 4 90 1.0 2.0 1.5 1.6 107 chr2R 6914674 exon CG30158 + chr2R 6914728 exon CG30158 + chr2R 6914781 exon CG30158 + chr2R_4_6910001 chr2R_6910001 RAL-703 518 chr2R 7153143 7153185 chr2R 7153245 7153291 5 102 3.0 2.5 2.8 1.3 148 chr2R 7153143 intron,exon pk +,Spn43Ab - chr2R 7153217 intron,intron pk +,Spn43Ab - chr2R 7153291 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-703 519 chr2R 7196552 7196595 chr2R 7201347 7201390 F-element 15 4794 3.5 3.0 3.2 3.6 4838 chr2R 7196552 intron pk + chr2R 7198971 intron pk + chr2R 7201390 intron pk + chr2R_15_7195001 chr2R_7195001 RAL-703 520 chr2R 7393367 7393397 chr2R 7393461 7393479 5 99 3.5 1.5 2.5 1.4 112 chr2R 7393367 intergenic CG1707 -,Gr43a - chr2R 7393423 intergenic CG1707 -,Gr43a - chr2R 7393479 intergenic CG1707 -,Gr43a - chr2R_5_7390001 chr2R_7390001 RAL-703 521 chr2R 7459259 7459280 chr2R 7459367 7459388 6 107 4.5 1.0 2.8 1.6 129 chr2R 7459259 intergenic Inos -,CG11141 - chr2R 7459324 intergenic CG11141 -,Inos - chr2R 7459388 intergenic CG11141 - chr2R_6_7455001 chr2R_7455001 RAL-703 522 chr2R 7563076 7563124 chr2R 7563175 7563223 9 93 2.5 3.5 3.0 2.2 147 chr2R 7563076 3` UTR Corin + chr2R 7563150 3` UTR Corin + chr2R 7563223 3` UTR Corin + chr2R_9_7560001 chr2R_7560001 RAL-703 523 chr2R 7608392 7608432 chr2R 7613614 7613653 I-element 15 5220 2.5 5.0 3.8 3.1 5261 chr2R 7608392 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613653 intron CG1358 - chr2R_15_7610001 chr2R_7610001 RAL-703 524 chr2R 7692012 7692016 chr2R 7692113 7692117 4 101 0.5 4.5 2.5 1.1 105 chr2R 7692012 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692117 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-703 525 chr2R 7714075 7714104 chr2R 7714156 7714185 4 88 4.0 2.5 3.2 1.0 110 chr2R 7714075 exon CG1942 + chr2R 7714130 3` UTR CG1942 + chr2R 7714185 intergenic CG1942 + chr2R_4_7710001 chr2R_7710001 RAL-703 526 chr2R 7815653 7815701 chr2R 7822142 7822162 Burdock 10 6482 2.5 2.5 2.5 2.9 6509 chr2R 7815653 intergenic CG1882 + chr2R 7818908 intergenic not near genes chr2R 7822162 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-703 527 chr2R 7851250 7851293 chr2R 7851350 7851399 10 100 2.0 2.5 2.2 3.1 149 chr2R 7851250 intron Dgk - chr2R 7851324 intron Dgk - chr2R 7851399 intron Dgk - chr2R_10_7850001 chr2R_7850001 RAL-703 528 chr2R 7869177 7869209 chr2R 7873983 7873998 Doc 5 4802 3.5 2.0 2.8 1.3 4821 chr2R 7869177 intron Dgk - chr2R 7871588 intron Dgk - chr2R 7873998 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-703 529 chr2R 8068807 8068852 chr2R 8068924 8068970 10 111 2.5 3.5 3.0 2.5 163 chr2R 8068807 intron lig + chr2R 8068888 intron lig + chr2R 8068970 intron lig + chr2R_10_8065001 chr2R_8065001 RAL-703 530 chr2R 8160918 8160941 chr2R 8161025 8161050 1360 6 107 2.0 6.5 4.2 1.2 132 chr2R 8160918 exon CG8708 - chr2R 8160984 intron CG8708 - chr2R 8161050 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-703 531 chr2R 8236026 8236059 chr2R 8236127 8236158 4 100 2.0 1.0 1.5 1.6 132 chr2R 8236026 intergenic not near genes chr2R 8236092 intergenic not near genes chr2R 8236158 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-703 532 chr2R 8330849 8330885 chr2R 8331355 8331391 roo 11 503 3.5 2.5 3.0 2.8 542 chr2R 8330849 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331391 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-703 533 chr2R 8398215 8398244 chr2R 8402995 8403029 Doc 5 4788 2.0 3.5 2.8 1.3 4814 chr2R 8398215 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403029 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-703 534 chr2R 8424619 8424645 chr2R 8424774 8424792 5 155 1.0 2.0 1.5 2.0 173 chr2R 8424619 intron CSN7 + chr2R 8424706 intron CSN7 + chr2R 8424792 intron CSN7 + chr2R_5_8420001 chr2R_8420001 RAL-703 535 chr2R 8452028 8452061 chr2R 8452130 8452164 12 102 2.0 5.0 3.5 2.7 136 chr2R 8452028 intergenic Mal-A1 - chr2R 8452096 intergenic Mal-A1 - chr2R 8452164 intergenic Mal-A1 - chr2R_12_8450001 chr2R_8450001 RAL-703 536 chr2R 8515604 8515656 chr2R 8515705 8515756 5 99 3.5 2.5 3.0 1.2 152 chr2R 8515604 intron mtt - chr2R 8515680 intron mtt - chr2R 8515756 intron mtt - chr2R_5_8515001 chr2R_8515001 RAL-703 537 chr2R 8522175 8522200 chr2R 8522261 8522290 11 85 1.5 3.0 2.2 3.4 115 chr2R 8522175 5` UTR mtt - chr2R 8522232 5` UTR mtt - chr2R 8522290 5` UTR mtt - chr2R_11_8520001 chr2R_8520001 RAL-703 538 chr2R 8538849 8538897 chr2R 8538947 8538999 13 94 2.0 1.5 1.8 4.6 150 chr2R 8538849 intergenic not near genes chr2R 8538924 intergenic not near genes chr2R 8538999 intergenic not near genes chr2R_13_8535001 chr2R_8535001 RAL-703 539 chr2R 8566012 8566058 chr2R 8566984 8567025 1360 9 971 4.5 5.5 5.0 1.5 1013 chr2R 8566012 5` UTR Cyp6a14 - chr2R 8566518 5` UTR Cyp6a14 - chr2R 8567025 5` UTR Cyp6a14 - chr2R_9_8565001 chr2R_8565001 RAL-703 540 chr2R 8569175 8569193 chr2R 8569508 8569517 4 329 3.5 2.5 3.0 1.0 342 chr2R 8569175 intergenic not near genes chr2R 8569346 intergenic not near genes chr2R 8569517 intergenic not near genes chr2R_4_8565001 chr2R_8565001 RAL-703 541 chr2R 8587995 8588044 chr2R 8588099 8588122 10 99 2.0 3.5 2.8 2.6 127 chr2R 8587995 intergenic not near genes chr2R 8588058 intergenic not near genes chr2R 8588122 intergenic not near genes chr2R_10_8585001 chr2R_8585001 RAL-703 542 chr2R 8615758 8615800 chr2R 8615891 8615932 5 132 1.5 2.0 1.8 1.8 174 chr2R 8615758 intron Cirl + chr2R 8615845 intron Cirl + chr2R 8615932 5` UTR Cirl + chr2R_5_8615001 chr2R_8615001 RAL-703 543 chr2R 8722748 8722789 chr2R 8723009 8723039 pogo 8 258 3.5 1.0 2.2 2.5 291 chr2R 8722748 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723039 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-703 544 chr2R 8750660 8750704 chr2R 8750755 8750776 12 80 3.0 4.5 3.8 2.5 116 chr2R 8750660 intron CG8740 + chr2R 8750718 intron CG8740 + chr2R 8750776 intron CG8740 + chr2R_12_8750001 chr2R_8750001 RAL-703 545 chr2R 8777903 8777944 chr2R 8784127 8784160 diver 4 6222 1.5 3.0 2.2 1.2 6257 chr2R 8777903 intergenic not near genes chr2R 8781032 intergenic not near genes chr2R 8784160 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-703 546 chr2R 8967113 8967162 chr2R 8967222 8967272 9 108 1.5 2.0 1.8 3.2 159 chr2R 8967113 intron CG8216 - chr2R 8967192 intron CG8216 - chr2R 8967272 intron CG8216 - chr2R_9_8965001 chr2R_8965001 RAL-703 547 chr2R 9076118 9076162 chr2R 9076214 9076243 5 88 2.0 3.0 2.5 1.4 125 chr2R 9076118 intron ana + chr2R 9076180 intron ana + chr2R 9076243 intron ana + chr2R_5_9075001 chr2R_9075001 RAL-703 548 chr2R 9151285 9151331 chr2R 9157775 9157820 Burdock 8 6485 2.0 3.0 2.5 2.3 6535 chr2R 9151285 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157820 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 RAL-703 549 chr2R 9212674 9212718 chr2R 9213179 9213224 roo 14 502 3.0 5.0 4.0 2.8 550 chr2R 9212674 intergenic CR45309 + chr2R 9212949 intergenic CR45309 + chr2R 9213224 5` UTR CR45309 + chr2R_14_9210001 chr2R_9210001 RAL-703 550 chr2R 9227850 9227904 chr2R 9227957 9228011 17 104 1.0 3.5 2.2 5.3 161 chr2R 9227850 3` UTR hig - chr2R 9227930 3` UTR hig - chr2R 9228011 3` UTR hig - chr2R_17_9225001 chr2R_9225001 RAL-703 551 chr2R 9368121 9368144 chr2R 9368201 9368223 8 85 4.5 1.0 2.8 2.1 102 chr2R 9368121 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-703 552 chr2R 9378089 9378130 chr2R 9378191 9378211 12 97 4.5 4.0 4.2 2.3 122 chr2R 9378089 intron CG13954 - chr2R 9378150 intron CG13954 - chr2R 9378211 intron CG13954 - chr2R_12_9375001 chr2R_9375001 RAL-703 553 chr2R 9510659 9510697 chr2R 9510795 9510833 4 136 3.0 4.0 3.5 0.9 174 chr2R 9510659 intron brp + chr2R 9510746 intron brp + chr2R 9510833 exon brp + chr2R_4_9510001 chr2R_9510001 RAL-703 554 chr2R 9862773 9862792 chr2R 9862869 9862881 4 92 1.0 2.5 1.8 1.4 108 chr2R 9862773 intergenic not near genes chr2R 9862827 intergenic not near genes chr2R 9862881 intergenic not near genes chr2R_4_9860001 chr2R_9860001 RAL-703 555 chr2R 9871055 9871065 chr2R 9871548 9871564 roo 5 501 0.0 7.0 3.5 1.1 509 chr2R 9871055 intron cbx - chr2R 9871310 intron cbx - chr2R 9871564 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-703 556 chr2R 9923838 9923888 chr2R 9923939 9923971 11 92 4.5 4.0 4.2 2.1 133 chr2R 9923838 intron Mef2 - chr2R 9923904 intron Mef2 - chr2R 9923971 intron Mef2 - chr2R_11_9920001 chr2R_9920001 RAL-703 557 chr2R 9935008 9935060 chr2R 9935110 9935128 12 96 1.5 2.5 2.0 4.0 120 chr2R 9935008 intron Mef2 - chr2R 9935068 intron Mef2 - chr2R 9935128 intron Mef2 - chr2R_12_9935001 chr2R_9935001 RAL-703 558 chr2R 9945431 9945466 chr2R 9945647 9945682 BS 6 215 1.5 3.5 2.5 1.7 251 chr2R 9945431 intron Mef2 - chr2R 9945556 intron Mef2 - chr2R 9945682 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-703 559 chr2R 9948374 9948408 chr2R 9948457 9948492 8 88 2.0 4.0 3.0 2.0 118 chr2R 9948374 intron Mef2 - chr2R 9948433 intron Mef2 - chr2R 9948492 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-703 560 chr2R 9956053 9956097 chr2R 9956150 9956194 17 91 2.0 4.0 3.0 4.2 141 chr2R 9956053 intron Mef2 - chr2R 9956124 intron Mef2 - chr2R 9956194 intron Mef2 - chr2R_17_9955001 chr2R_9955001 RAL-703 561 chr2R 10005833 10005879 chr2R 10007012 10007044 1360 10 1178 2.0 2.0 2.0 3.3 1211 chr2R 10005833 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007044 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-703 562 chr2R 10020835 10020876 chr2R 10020931 10020972 11 94 4.0 3.5 3.8 2.3 137 chr2R 10020835 intron Pka-R2 - chr2R 10020904 intron Pka-R2 - chr2R 10020972 intron Pka-R2 - chr2R_11_10020001 chr2R_10020001 RAL-703 563 chr2R 10132172 10132220 chr2R 10132272 10132312 6 98 1.5 3.5 2.5 1.7 140 chr2R 10132172 intron gem + chr2R 10132242 intron gem + chr2R 10132312 exon gem + chr2R_6_10130001 chr2R_10130001 RAL-703 564 chr2R 10203627 10203661 chr2R 10203729 10203766 5 102 3.5 2.0 2.8 1.3 139 chr2R 10203627 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203766 intergenic not near genes chr2R_5_10200001 chr2R_10200001 RAL-703 565 chr2R 10216205 10216220 chr2R 10216284 10216301 5 91 0.5 4.5 2.5 1.4 96 chr2R 10216205 intron,intron CG12912 -,Hr46 - chr2R 10216253 intron,intron CG12912 -,Hr46 - chr2R 10216301 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-703 566 chr2R 10300625 10300678 chr2R 10300740 10300794 10 114 0.0 0.0 0.0 10.0 169 chr2R 10300625 intron CAP + chr2R 10300710 intron CAP + chr2R 10300794 intron CAP + chr2R_10_10300001 chr2R_10300001 RAL-703 567 chr2R 10313306 10313352 chr2R 10313414 10313439 7 105 1.0 2.0 1.5 2.8 133 chr2R 10313306 intergenic not near genes chr2R 10313372 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-703 568 chr2R 10352659 10352703 chr2R 10352753 10352800 4 96 2.5 3.0 2.8 1.1 141 chr2R 10352659 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352730 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352800 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-703 569 chr2R 10411782 10411831 chr2R 10411884 10411894 4 91 2.5 2.0 2.2 1.2 112 chr2R 10411782 intron CG42732 - chr2R 10411838 intron CG42732 - chr2R 10411894 intron CG42732 - chr2R_4_10410001 chr2R_10410001 RAL-703 570 chr2R 10431200 10431214 chr2R 10431327 10431342 6 127 4.5 7.5 6.0 0.9 142 chr2R 10431200 exon RanBPM + chr2R 10431271 exon RanBPM + chr2R 10431342 exon RanBPM + chr2R_6_10430001 chr2R_10430001 RAL-703 571 chr2R 10562961 10563233 chr2R 10563059 10563351 8 101 0.0 0.0 0.0 8.0 390 chr2R 10562961 intron psq + chr2R 10563156 intron psq + chr2R 10563351 intron psq + chr2R_8_10560001 chr2R_10560001 RAL-703 572 chr2R 10563555 10563578 chr2R 10563645 10563678 5 98 2.5 7.0 4.8 0.9 123 chr2R 10563555 intron psq + chr2R 10563616 intron psq + chr2R 10563678 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-703 573 chr2R 10582095 10582139 chr2R 10582210 10582244 11 112 2.5 0.0 1.2 5.0 149 chr2R 10582095 intron psq + chr2R 10582170 intron psq + chr2R 10582244 intron psq + chr2R_11_10580001 chr2R_10580001 RAL-703 574 chr2R 10644045 10644080 chr2R 10644143 10644178 5 98 1.5 0.5 1.0 2.5 133 chr2R 10644045 intron Git - chr2R 10644112 intron Git - chr2R 10644178 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-703 575 chr2R 10658037 10658071 chr2R 10658147 10658169 8 110 3.0 1.5 2.2 2.5 132 chr2R 10658037 intergenic CR44452 - chr2R 10658103 intergenic not near genes chr2R 10658169 intergenic not near genes chr2R_8_10655001 chr2R_10655001 RAL-703 576 chr2R 10762457 10762496 chr2R 10762559 10762599 6 96 4.5 5.5 5.0 1.0 142 chr2R 10762457 intron CG33144 - chr2R 10762528 intron CG33144 - chr2R 10762599 intron CG33144 - chr2R_6_10760001 chr2R_10760001 RAL-703 577 chr2R 10790137 10790176 chr2R 10790233 10790269 10 102 2.5 6.0 4.2 1.9 132 chr2R 10790137 intron CG33144 - chr2R 10790203 intron CG33144 - chr2R 10790269 intron CG33144 - chr2R_10_10790001 chr2R_10790001 RAL-703 578 chr2R 10800087 10800136 chr2R 10801588 10801639 12 1498 4.0 16.5 10.2 1.1 1552 chr2R 10800087 intergenic wde - chr2R 10800863 exon wde - chr2R 10801639 exon wde - chr2R_12_10800001 chr2R_10800001 RAL-703 579 chr2R 10947073 10947080 chr2R 10947180 10947187 4 107 5.0 0.0 2.5 1.1 114 chr2R 10947073 5` UTR CR45228 + chr2R 10947130 intergenic CR45228 + chr2R 10947187 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-703 580 chr2R 10959085 10959107 chr2R 10959183 10959206 5 96 0.5 6.0 3.2 1.2 121 chr2R 10959085 intergenic not near genes chr2R 10959146 intergenic not near genes chr2R 10959206 intergenic not near genes chr2R_5_10955001 chr2R_10955001 RAL-703 581 chr2R 11009799 11009843 chr2R 11018991 11019013 roo 6 9179 3.0 2.5 2.8 1.6 9214 chr2R 11009799 intron luna - chr2R 11014406 intron luna - chr2R 11019013 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-703 582 chr2R 11019883 11019904 chr2R 11024949 11024990 jockey 4 5072 2.5 4.0 3.2 1.0 5107 chr2R 11019883 intron luna - chr2R 11022436 intron luna - chr2R 11024990 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-703 583 chr2R 11059616 11059662 chr2R 11059713 11059747 6 92 2.0 3.0 2.5 1.7 131 chr2R 11059616 intron luna - chr2R 11059682 intron luna - chr2R 11059747 intron luna - chr2R_6_11055001 chr2R_11055001 RAL-703 584 chr2R 11119682 11119718 chr2R 11119833 11119855 4 139 4.5 0.0 2.2 1.2 173 chr2R 11119682 3` UTR Cyp12d1-p - chr2R 11119768 3` UTR Cyp12d1-p - chr2R 11119855 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-703 585 chr2R 11155832 11155838 chr2R 11155955 11155962 4 124 1.5 3.5 2.5 1.1 130 chr2R 11155832 intron CG13229 - chr2R 11155897 intron CG13229 - chr2R 11155962 intron CG13229 - chr2R_4_11155001 chr2R_11155001 RAL-703 586 chr2R 11179263 11179282 chr2R 11179358 11179380 5 100 0.0 4.0 2.0 1.7 117 chr2R 11179263 intron shn + chr2R 11179322 intron shn + chr2R 11179380 intron shn + chr2R_5_11175001 chr2R_11175001 RAL-703 587 chr2R 11292949 11293000 chr2R 11293048 11293117 7 97 2.0 0.0 1.0 3.5 168 chr2R 11292949 exon,3` UTR dare -,CG30033 + chr2R 11293033 5` UTR,3` UTR dare -,CG30033 + chr2R 11293117 5` UTR,3` UTR dare -,CG30033 + chr2R_7_11290001 chr2R_11290001 RAL-703 588 chr2R 11297623 11297646 chr2R 11301964 11301987 flea 4 4341 3.5 1.0 2.2 1.2 4364 chr2R 11297623 intergenic CG42336 - chr2R 11299805 intergenic not near genes chr2R 11301987 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-703 589 chr2R 11415523 11415547 chr2R 11418665 11418714 opus 7 3160 2.0 2.0 2.0 2.3 3191 chr2R 11415523 intron Drip - chr2R 11417118 intron Drip - chr2R 11418714 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-703 590 chr2R 11472639 11472680 chr2R 11473844 11473895 pogo 6 1213 4.5 4.0 4.2 1.2 1256 chr2R 11472639 intergenic not near genes chr2R 11473267 intergenic not near genes chr2R 11473895 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-703 591 chr2R 11480803 11480826 chr2R 11480906 11480919 4 100 0.5 3.0 1.8 1.4 116 chr2R 11480803 intron inv + chr2R 11480861 intron inv + chr2R 11480919 intron inv + chr2R_4_11480001 chr2R_11480001 RAL-703 592 chr2R 11494602 11494621 chr2R 11494685 11494729 5 99 3.0 2.0 2.5 1.4 127 chr2R 11494602 intron inv + chr2R 11494666 intron inv + chr2R 11494729 intron inv + chr2R_5_11490001 chr2R_11490001 RAL-703 593 chr2R 11550463 11550492 chr2R 11550545 11550584 6 96 1.5 0.0 0.8 3.3 121 chr2R 11550463 intergenic not near genes chr2R 11550524 intergenic not near genes chr2R 11550584 intergenic not near genes chr2R_6_11550001 chr2R_11550001 RAL-703 594 chr2R 11636412 11636442 chr2R 11636484 11636534 5 74 3.0 3.0 3.0 1.2 122 chr2R 11636412 intron CG9005 - chr2R 11636473 intron CG9005 - chr2R 11636534 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-703 595 chr2R 11660356 11660398 chr2R 11660492 11660535 6 137 0.5 2.5 1.5 2.4 179 chr2R 11660356 intron Roc2 - chr2R 11660446 intron Roc2 - chr2R 11660535 intron Roc2 - chr2R_6_11660001 chr2R_11660001 RAL-703 596 chr2R 11667372 11667400 chr2R 11667485 11667514 7 112 2.0 2.5 2.2 2.2 142 chr2R 11667372 intron,intron Roc2 -,Tret1-1 + chr2R 11667443 intron,intron Roc2 -,Tret1-1 + chr2R 11667514 intron,intron Roc2 -,Tret1-1 + chr2R_7_11665001 chr2R_11665001 RAL-703 597 chr2R 11677867 11677894 chr2R 11677950 11677991 6 88 5.0 2.0 3.5 1.3 124 chr2R 11677867 intron,exon Roc2 -,Tret1-2 + chr2R 11677929 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677991 intron,3` UTR Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-703 598 chr2R 11724141 11724184 chr2R 11724244 11724287 5 103 1.0 2.5 1.8 1.8 146 chr2R 11724141 intron pyr + chr2R 11724214 intron pyr + chr2R 11724287 intron pyr + chr2R_5_11720001 chr2R_11720001 RAL-703 599 chr2R 11932552 11932591 chr2R 11932676 11932728 9 129 2.0 2.5 2.2 2.8 176 chr2R 11932552 intergenic not near genes chr2R 11932640 intergenic not near genes chr2R 11932728 intergenic not near genes chr2R_9_11930001 chr2R_11930001 RAL-703 600 chr2R 12093936 12093980 chr2R 12094068 12094113 8 131 4.0 3.5 3.8 1.7 177 chr2R 12093936 intron jeb - chr2R 12094024 intron jeb - chr2R 12094113 intron jeb - chr2R_8_12090001 chr2R_12090001 RAL-703 601 chr2R 12185995 12186035 chr2R 12186110 12186150 8 111 2.5 4.0 3.2 1.9 155 chr2R 12185995 intron Cyp6g1 + chr2R 12186072 intron Cyp6g1 + chr2R 12186150 intron Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-703 602 chr2R 12185222 12185239 chr2R 12188127 12188144 4 2906 17.5 95.5 56.5 0.1 2922 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186683 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-703 603 chr2R 12189385 12189405 chr2R 12189598 12189614 7 210 69.0 71.5 70.2 0.1 229 chr2R 12189385 exon Cyp6g2 - chr2R 12189500 exon Cyp6g2 - chr2R 12189614 exon Cyp6g2 - chr2R_7_12185001 chr2R_12185001 RAL-703 604 chr2R 12187475 12187493 chr2R 12190071 12190090 13 2599 64.0 61.5 62.8 0.2 2615 chr2R 12187475 exon Cyp6g1 + chr2R 12188782 exon Cyp6g2 - chr2R 12190090 exon Cyp6g2 - chr2R_13_12185001 chr2R_12185001 RAL-703 605 chr2R 12187474 12187516 chr2R 12190092 12190124 13 2608 84.0 53.5 68.8 0.2 2650 chr2R 12187474 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_13_12185001 chr2R_12185001 RAL-703 606 chr2R 12194909 12194930 chr2R 12196032 12196081 18 1128 15.0 24.0 19.5 0.9 1172 chr2R 12194909 exon CG8858 - chr2R 12195495 exon CG8858 - chr2R 12196081 exon CG8858 - chr2R_18_12195001 chr2R_12195001 RAL-703 607 chr2R 12217571 12217601 chr2R 12217660 12217701 8 98 4.0 4.0 4.0 1.6 130 chr2R 12217571 intergenic not near genes chr2R 12217636 intergenic not near genes chr2R 12217701 intergenic not near genes chr2R_8_12215001 chr2R_12215001 RAL-703 608 chr2R 12363362 12363414 chr2R 12363814 12363849 7 446 1.5 3.5 2.5 2.0 487 chr2R 12363362 intergenic CG30043 + chr2R 12363606 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-703 609 chr2R 12417465 12417481 chr2R 12417542 12417581 4 82 1.0 3.0 2.0 1.3 116 chr2R 12417465 exon CG13157 + chr2R 12417523 exon CG13157 + chr2R 12417581 exon CG13157 + chr2R_4_12415001 chr2R_12415001 RAL-703 610 chr2R 12479118 12479153 chr2R 12479226 12479239 4 102 2.0 3.0 2.5 1.1 121 chr2R 12479118 intron Dh44-R2 + chr2R 12479178 intron Dh44-R2 + chr2R 12479239 intron Dh44-R2 + chr2R_4_12475001 chr2R_12475001 RAL-703 611 chr2R 12492085 12492104 chr2R 12492190 12492218 7 112 4.5 0.5 2.5 2.0 133 chr2R 12492085 intron fdl - chr2R 12492152 intron fdl - chr2R 12492218 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-703 612 chr2R 12501688 12501704 chr2R 12503852 12503867 Rt1c 4 2172 4.5 2.5 3.5 0.9 2179 chr2R 12501688 intron fdl - chr2R 12502778 intron fdl - chr2R 12503867 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-703 613 chr2R 12504135 12504179 chr2R 12504232 12504259 12 93 3.5 3.0 3.2 2.9 124 chr2R 12504135 intron fdl - chr2R 12504197 intron fdl - chr2R 12504259 intron fdl - chr2R_12_12500001 chr2R_12500001 RAL-703 614 chr2R 12527270 12527301 chr2R 12527497 12527530 6 226 2.5 8.0 5.2 1.0 260 chr2R 12527270 intergenic not near genes chr2R 12527400 intergenic not near genes chr2R 12527530 intergenic not near genes chr2R_6_12525001 chr2R_12525001 RAL-703 615 chr2R 12565560 12565597 chr2R 12565943 12565987 9 389 1.5 2.5 2.0 3.0 427 chr2R 12565560 intergenic not near genes chr2R 12565774 intergenic Cyp301a1 + chr2R 12565987 intergenic Cyp301a1 + chr2R_9_12565001 chr2R_12565001 RAL-703 616 chr2R 12700806 12700842 chr2R 12700906 12700911 11 92 5.0 5.0 5.0 1.8 105 chr2R 12700806 3` UTR wuc + chr2R 12700858 intergenic wuc + chr2R 12700911 intergenic wuc + chr2R_11_12700001 chr2R_12700001 RAL-703 617 chr2R 12707511 12707542 chr2R 12715896 12715905 roo 6 8381 0.5 3.0 1.8 2.1 8394 chr2R 12707511 intron CG42663 + chr2R 12711708 intron CG42663 + chr2R 12715905 intron CG42663 + chr2R_6_12710001 chr2R_12710001 RAL-703 618 chr2R 12724780 12724832 chr2R 12726083 12726124 9 1297 4.0 3.5 3.8 1.9 1344 chr2R 12724780 intron CG42663 + chr2R 12725452 intron CG42663 + chr2R 12726124 intron CG42663 + chr2R_9_12725001 chr2R_12725001 RAL-703 619 chr2R 12765047 12765073 chr2R 12765153 12765161 4 100 4.0 6.5 5.2 0.6 114 chr2R 12765047 intergenic not near genes chr2R 12765104 intergenic not near genes chr2R 12765161 intergenic not near genes chr2R_4_12765001 chr2R_12765001 RAL-703 620 chr2R 12789285 12789326 chr2R 12797656 12797685 roo 6 8372 2.5 2.5 2.5 1.7 8400 chr2R 12789285 intron,3` UTR sca +,CR45137 - chr2R 12793485 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-703 621 chr2R 12836369 12836407 chr2R 12836476 12836514 6 103 1.5 3.0 2.2 1.9 145 chr2R 12836369 intergenic not near genes chr2R 12836442 intergenic not near genes chr2R 12836514 intergenic not near genes chr2R_6_12835001 chr2R_12835001 RAL-703 622 chr2R 12844707 12844734 chr2R 12844799 12844845 4 106 6.0 3.0 4.5 0.7 138 chr2R 12844707 intergenic Or49b + chr2R 12844776 intergenic Or49b + chr2R 12844845 intergenic Or49b + chr2R_4_12840001 chr2R_12840001 RAL-703 623 chr2R 12951648 12951684 chr2R 12951749 12951782 4 100 2.5 4.0 3.2 1.0 134 chr2R 12951648 intron,intron CG44251 -,CG44250 - chr2R 12951715 intron,intron CG44251 -,CG44250 - chr2R 12951782 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-703 624 chr2R 13136820 13136861 chr2R 13141638 13141678 Doc 14 4814 3.5 2.0 2.8 3.7 4858 chr2R 13136820 exon Cap-G + chr2R 13139249 intron Cap-G + chr2R 13141678 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-703 625 chr2R 13163739 13163745 chr2R 13163827 13163843 5 93 2.5 3.5 3.0 1.2 104 chr2R 13163739 exon CG15870 - chr2R 13163791 exon CG15870 - chr2R 13163843 5` UTR CG15870 - chr2R_5_13160001 chr2R_13160001 RAL-703 626 chr2R 13167429 13167441 chr2R 13167542 13167554 6 112 2.0 0.0 1.0 3.0 125 chr2R 13167429 intron GLaz - chr2R 13167492 intron GLaz - chr2R 13167554 intron GLaz - chr2R_6_13165001 chr2R_13165001 RAL-703 627 chr2R 13258540 13258574 chr2R 13259805 13259836 7 1260 1.5 1.0 1.2 3.2 1296 chr2R 13258540 intergenic CG10799 + chr2R 13259188 intergenic not near genes chr2R 13259836 intergenic CG42319 + chr2R_7_13255001 chr2R_13255001 RAL-703 628 chr2R 13368738 13368788 chr2R 13368868 13368919 4 130 1.0 0.5 0.8 2.2 181 chr2R 13368738 intergenic not near genes chr2R 13368828 intergenic not near genes chr2R 13368919 intergenic not near genes chr2R_4_13365001 chr2R_13365001 RAL-703 629 chr2R 13372098 13372148 chr2R 13372210 13372239 9 105 6.0 6.5 6.2 1.2 141 chr2R 13372098 intergenic not near genes chr2R 13372168 intergenic not near genes chr2R 13372239 intergenic not near genes chr2R_9_13370001 chr2R_13370001 RAL-703 630 chr2R 13387135 13387177 chr2R 13387230 13387269 7 96 3.0 3.0 3.0 1.8 134 chr2R 13387135 intergenic not near genes chr2R 13387202 intergenic not near genes chr2R 13387269 intergenic not near genes chr2R_7_13385001 chr2R_13385001 RAL-703 631 chr2R 13431475 13431518 chr2R 13431574 13431617 5 92 2.0 3.5 2.8 1.3 142 chr2R 13431475 intron CG42321 - chr2R 13431546 intron CG42321 - chr2R 13431617 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-703 632 chr2R 13432923 13432967 chr2R 13433019 13433063 4 93 1.5 2.0 1.8 1.4 140 chr2R 13432923 intron CG42321 - chr2R 13432993 intron CG42321 - chr2R 13433063 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-703 633 chr2R 13439088 13439135 chr2R 13439223 13439268 4 127 1.5 1.0 1.2 1.8 180 chr2R 13439088 intergenic CG42321 -,cnn - chr2R 13439178 intergenic CG42321 -,cnn - chr2R 13439268 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-703 634 chr2R 13471618 13471635 chr2R 13471721 13471739 4 103 0.0 6.5 3.2 1.0 121 chr2R 13471618 intron arr - chr2R 13471678 intron arr - chr2R 13471739 intron arr - chr2R_4_13470001 chr2R_13470001 RAL-703 635 chr2R 13532500 13532521 chr2R 13532636 13532657 5 135 3.0 2.5 2.8 1.3 157 chr2R 13532500 intron Vmat - chr2R 13532578 intron Vmat - chr2R 13532657 intron Vmat - chr2R_5_13530001 chr2R_13530001 RAL-703 636 chr2R 13566238 13566278 chr2R 13566337 13566376 14 99 5.0 0.0 2.5 4.0 138 chr2R 13566238 intergenic not near genes chr2R 13566307 intergenic not near genes chr2R 13566376 intergenic not near genes chr2R_14_13565001 chr2R_13565001 RAL-703 637 chr2R 13577434 13577466 chr2R 13577508 13577544 6 87 2.0 0.5 1.2 2.7 110 chr2R 13577434 5` UTR CR44365 + chr2R 13577489 5` UTR CR44365 + chr2R 13577544 5` UTR CR44365 + chr2R_6_13575001 chr2R_13575001 RAL-703 638 chr2R 13580506 13580525 chr2R 13580854 13580869 jockey 8 362 1.5 5.0 3.2 1.9 363 chr2R 13580506 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580869 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-703 639 chr2R 13721192 13721229 chr2R 13721287 13721330 6 98 3.5 1.5 2.5 1.7 138 chr2R 13721192 intron fas + chr2R 13721261 intron fas + chr2R 13721330 intron fas + chr2R_6_13720001 chr2R_13720001 RAL-703 640 chr2R 13728137 13728155 chr2R 13735792 13735832 opus 5 7673 2.5 3.0 2.8 1.3 7695 chr2R 13728137 intron fas + chr2R 13731984 intron fas + chr2R 13735832 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-703 641 chr2R 13749494 13749527 chr2R 13749588 13749634 9 102 2.5 1.0 1.8 3.2 140 chr2R 13749494 intergenic fas + chr2R 13749564 intergenic fas + chr2R 13749634 intergenic fas + chr2R_9_13745001 chr2R_13745001 RAL-703 642 chr2R 13768964 13769005 chr2R 13769081 13769124 6 113 2.0 3.0 2.5 1.7 160 chr2R 13768964 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769124 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-703 643 chr2R 13817696 13817700 chr2R 13817785 13817801 5 100 3.0 3.0 3.0 1.2 105 chr2R 13817696 intron stj + chr2R 13817748 intron stj + chr2R 13817801 intron stj + chr2R_5_13815001 chr2R_13815001 RAL-703 644 chr2R 14093415 14093426 chr2R 14109586 14109597 4 16170 7.0 1.5 4.2 0.8 16182 chr2R 14093415 intron Prosap - chr2R 14101506 intron Prosap - chr2R 14109597 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-703 645 chr2R 14285040 14285051 chr2R 14285143 14285147 4 101 1.0 2.5 1.8 1.4 107 chr2R 14285040 intron Ih + chr2R 14285094 intron Ih + chr2R 14285147 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-703 646 chr2R 14393860 14393899 chr2R 14393953 14393985 9 101 2.0 6.0 4.0 1.8 125 chr2R 14393860 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393985 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-703 647 chr2R 14467303 14467318 chr2R 14476464 14476495 roo 5 9169 4.0 2.5 3.2 1.2 9192 chr2R 14467303 intergenic not near genes chr2R 14471899 intergenic not near genes chr2R 14476495 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-703 648 chr2R 14497378 14497415 chr2R 14498564 14498601 1360 7 1185 3.0 2.0 2.5 2.0 1223 chr2R 14497378 3` UTR Cpsf160 - chr2R 14497990 intron Cpsf160 - chr2R 14498601 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-703 649 chr2R 14530342 14530375 chr2R 14530451 14530484 6 105 4.5 3.5 4.0 1.2 142 chr2R 14530342 intron ttv + chr2R 14530413 intron ttv + chr2R 14530484 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-703 650 chr2R 14530728 14530773 chr2R 14530826 14530875 5 97 2.5 1.5 2.0 1.7 147 chr2R 14530728 intron ttv + chr2R 14530802 intron ttv + chr2R 14530875 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-703 651 chr2R 14538950 14538966 chr2R 14539045 14539059 4 95 5.0 4.0 4.5 0.7 109 chr2R 14538950 intron ttv + chr2R 14539004 intron ttv + chr2R 14539059 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-703 652 chr2R 14538975 14538986 chr2R 14539038 14539059 6 83 5.0 4.0 4.5 1.1 84 chr2R 14538975 intron ttv + chr2R 14539017 intron ttv + chr2R 14539059 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-703 653 chr2R 14556150 14556181 chr2R 14556241 14556280 13 94 3.0 3.0 3.0 3.2 130 chr2R 14556150 intron ttv + chr2R 14556215 intron ttv + chr2R 14556280 intron ttv + chr2R_13_14555001 chr2R_14555001 RAL-703 654 chr2R 14565548 14565592 chr2R 14565645 14565687 12 96 2.5 2.5 2.5 3.4 139 chr2R 14565548 intron ttv + chr2R 14565618 intron ttv + chr2R 14565687 intron ttv + chr2R_12_14565001 chr2R_14565001 RAL-703 655 chr2R 14566444 14566475 chr2R 14566535 14566569 9 100 6.0 2.5 4.2 1.7 125 chr2R 14566444 intron ttv + chr2R 14566506 intron ttv + chr2R 14566569 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-703 656 chr2R 14566977 14567009 chr2R 14567080 14567102 6 98 3.0 0.5 1.8 2.1 125 chr2R 14566977 intron ttv + chr2R 14567040 intron ttv + chr2R 14567102 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-703 657 chr2R 14634260 14634309 chr2R 14634367 14634417 14 105 5.0 4.5 4.8 2.4 157 chr2R 14634260 intergenic not near genes chr2R 14634338 intergenic not near genes chr2R 14634417 intergenic not near genes chr2R_14_14630001 chr2R_14630001 RAL-703 658 chr2R 14737611 14737637 chr2R 14737715 14737738 4 99 7.0 10.5 8.8 0.4 127 chr2R 14737611 3` UTR CR43428 - chr2R 14737674 3` UTR CR43428 - chr2R 14737738 3` UTR CR43428 - chr2R_4_14735001 chr2R_14735001 RAL-703 659 chr2R 14799866 14799890 chr2R 14799962 14799986 5 96 0.5 3.0 1.8 1.8 120 chr2R 14799866 intron kn - chr2R 14799926 intron kn - chr2R 14799986 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-703 660 chr2R 14850050 14850087 chr2R 14850163 14850210 10 120 12.5 19.0 15.8 0.6 160 chr2R 14850050 exon SMC2 - chr2R 14850130 intron SMC2 - chr2R 14850210 exon SMC2 - chr2R_10_14850001 chr2R_14850001 RAL-703 661 chr2R 14911680 14911707 chr2R 14911823 14911848 5 142 4.0 2.0 3.0 1.2 168 chr2R 14911680 intron CG10249 - chr2R 14911764 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-703 662 chr2R 14916536 14916550 chr2R 14916635 14916650 6 100 1.5 1.5 1.5 2.4 114 chr2R 14916536 intron CG10249 - chr2R 14916593 intron CG10249 - chr2R 14916650 intron CG10249 - chr2R_6_14915001 chr2R_14915001 RAL-703 663 chr2R 14922138 14922160 chr2R 14922231 14922256 4 95 3.0 1.5 2.2 1.2 118 chr2R 14922138 intron CG10249 - chr2R 14922197 intron CG10249 - chr2R 14922256 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-703 664 chr2R 15015440 15015479 chr2R 15022882 15022923 mdg1 6 7443 0.5 2.0 1.2 2.7 7483 chr2R 15015440 intron hbs + chr2R 15019182 intron hbs + chr2R 15022923 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-703 665 chr2R 15053384 15053427 chr2R 15053659 15053701 7 269 1.5 3.0 2.2 2.2 317 chr2R 15053384 intergenic not near genes chr2R 15053542 intergenic not near genes chr2R 15053701 intergenic not near genes chr2R_7_15050001 chr2R_15050001 RAL-703 666 chr2R 15054730 15054766 chr2R 15054823 15054863 5 91 5.5 6.0 5.8 0.7 133 chr2R 15054730 intergenic not near genes chr2R 15054796 intergenic not near genes chr2R 15054863 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-703 667 chr2R 15084962 15085001 chr2R 15092031 15092068 297 9 7066 4.5 2.5 3.5 2.0 7106 chr2R 15084962 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092068 5` UTR CR44457 + chr2R_9_15085001 chr2R_15085001 RAL-703 668 chr2R 15119298 15119348 chr2R 15127799 15127844 Tirant 8 8497 5.5 2.5 4.0 1.6 8546 chr2R 15119298 intron chn + chr2R 15123571 intron chn + chr2R 15127844 intron chn + chr2R_8_15120001 chr2R_15120001 RAL-703 669 chr2R 15201212 15201260 chr2R 15201322 15201328 9 102 3.0 0.5 1.8 3.2 116 chr2R 15201212 intergenic GPHR -,CG11807 + chr2R 15201270 5` UTR CG11807 + chr2R 15201328 5` UTR CG11807 + chr2R_9_15200001 chr2R_15200001 RAL-703 670 chr2R 15235056 15235080 chr2R 15235189 15235214 5 134 3.5 2.5 3.0 1.2 158 chr2R 15235056 intron Fs - chr2R 15235135 intron Fs - chr2R 15235214 intron Fs - chr2R_5_15235001 chr2R_15235001 RAL-703 671 chr2R 15326553 15326603 chr2R 15326655 15326706 5 102 1.0 2.0 1.5 2.0 153 chr2R 15326553 intergenic CG8157 - chr2R 15326630 intergenic CG8157 - chr2R 15326706 intergenic CG8157 -,CG8160 - chr2R_5_15325001 chr2R_15325001 RAL-703 672 chr2R 15405023 15405040 chr2R 15405166 15405184 5 144 3.0 0.0 1.5 2.0 161 chr2R 15405023 intron,5` UTR CG43729 +,CR45020 + chr2R 15405104 intron CG43729 + chr2R 15405184 intron CG43729 + chr2R_5_15405001 chr2R_15405001 RAL-703 673 chr2R 15415675 15415705 chr2R 15415758 15415761 4 82 1.0 3.5 2.2 1.2 86 chr2R 15415675 5` UTR CG43729 + chr2R 15415718 5` UTR CG43729 + chr2R 15415761 5` UTR CG43729 + chr2R_4_15415001 chr2R_15415001 RAL-703 674 chr2R 15606112 15606128 chr2R 15606209 15606225 4 96 5.5 1.0 3.2 1.0 113 chr2R 15606112 intergenic not near genes chr2R 15606168 intergenic not near genes chr2R 15606225 intergenic not near genes chr2R_4_15605001 chr2R_15605001 RAL-703 675 chr2R 15833503 15833559 chr2R 15833610 15833626 10 96 2.5 2.5 2.5 2.9 123 chr2R 15833503 intron,intron tun +,Poxn - chr2R 15833564 intron,intron tun +,Poxn - chr2R 15833626 intron,intron tun +,Poxn - chr2R_10_15830001 chr2R_15830001 RAL-703 676 chr2R 15848309 15848337 chr2R 15848406 15848434 5 97 1.0 0.0 0.5 3.3 125 chr2R 15848309 intron tun + chr2R 15848372 intron tun + chr2R 15848434 intron tun + chr2R_5_15845001 chr2R_15845001 RAL-703 677 chr2R 15869329 15869369 chr2R 15869429 15869465 5 97 2.0 3.0 2.5 1.4 136 chr2R 15869329 intergenic sli -,Rif1 - chr2R 15869397 intergenic sli -,Rif1 - chr2R 15869465 intergenic sli -,Rif1 - chr2R_5_15865001 chr2R_15865001 RAL-703 678 chr2R 16245616 16245645 chr2R 16245724 16245753 5 107 5.5 1.5 3.5 1.1 137 chr2R 16245616 intron CngA - chr2R 16245684 intron CngA - chr2R 16245753 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-703 679 chr2R 16352853 16352863 chr2R 16352956 16352958 4 101 2.5 1.5 2.0 1.3 105 chr2R 16352853 intergenic not near genes chr2R 16352906 intergenic not near genes chr2R 16352958 intergenic not near genes chr2R_4_16350001 chr2R_16350001 RAL-703 680 chr2R 16392314 16392328 chr2R 16392409 16392430 5 98 2.5 0.5 1.5 2.0 116 chr2R 16392314 intron Sema-2b + chr2R 16392372 intron Sema-2b + chr2R 16392430 intron Sema-2b + chr2R_5_16390001 chr2R_16390001 RAL-703 681 chr2R 16489279 16489297 chr2R 16489368 16489401 5 101 3.0 5.5 4.2 1.0 122 chr2R 16489279 intergenic CG33459 + chr2R 16489340 intergenic CG33459 + chr2R 16489401 intergenic CG33459 + chr2R_5_16485001 chr2R_16485001 RAL-703 682 chr2R 16518040 16518072 chr2R 16518136 16518167 6 95 1.5 4.0 2.8 1.6 127 chr2R 16518040 intron Sema-2a + chr2R 16518104 intron Sema-2a + chr2R 16518167 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-703 683 chr2R 16537013 16537049 chr2R 16537118 16537153 6 100 0.0 5.0 2.5 1.7 140 chr2R 16537013 3` UTR loopin-1 + chr2R 16537083 3` UTR loopin-1 + chr2R 16537153 intergenic loopin-1 + chr2R_6_16535001 chr2R_16535001 RAL-703 684 chr2R 16539642 16539668 chr2R 16544871 16544896 copia 5 5228 1.5 3.5 2.5 1.4 5254 chr2R 16539642 intergenic not near genes chr2R 16542269 intergenic not near genes chr2R 16544896 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-703 685 chr2R 16546981 16547016 chr2R 16547081 16547095 4 95 0.0 0.5 0.2 3.3 114 chr2R 16546981 intergenic not near genes chr2R 16547038 intergenic not near genes chr2R 16547095 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-703 686 chr2R 16571859 16571900 chr2R 16571969 16572015 4 114 3.0 3.0 3.0 1.0 156 chr2R 16571859 intergenic CG4927 + chr2R 16571937 intergenic CG4927 + chr2R 16572015 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-703 687 chr2R 16619967 16619996 chr2R 16620068 16620078 5 97 1.0 0.0 0.5 3.3 111 chr2R 16619967 intron CG5065 + chr2R 16620022 intron CG5065 + chr2R 16620078 intron CG5065 + chr2R_5_16620001 chr2R_16620001 RAL-703 688 chr2R 16775637 16775675 chr2R 16775924 16775962 6 285 2.0 2.0 2.0 2.0 325 chr2R 16775637 3` UTR Arp53D + chr2R 16775800 intergenic Arp53D + chr2R 16775962 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-703 689 chr2R 16806605 16806658 chr2R 16806815 16806866 5 207 2.0 1.0 1.5 2.0 261 chr2R 16806605 intergenic not near genes chr2R 16806736 intergenic not near genes chr2R 16806866 intergenic not near genes chr2R_5_16805001 chr2R_16805001 RAL-703 690 chr2R 17074129 17074169 chr2R 17074242 17074286 11 114 2.5 3.0 2.8 2.9 157 chr2R 17074129 intron CG30460 - chr2R 17074208 intron CG30460 - chr2R 17074286 intron CG30460 - chr2R_11_17070001 chr2R_17070001 RAL-703 691 chr2R 17130867 17130905 chr2R 17130956 17131002 10 90 2.0 5.0 3.5 2.2 135 chr2R 17130867 intergenic CR45273 - chr2R 17130934 intergenic CR45273 - chr2R 17131002 intergenic CR45273 - chr2R_10_17130001 chr2R_17130001 RAL-703 692 chr2R 17147225 17147264 chr2R 17152274 17152315 jockey 10 5050 6.5 3.5 5.0 1.7 5090 chr2R 17147225 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152315 intergenic not near genes chr2R_10_17145001 chr2R_17145001 RAL-703 693 chr2R 17236490 17236536 chr2R 17241712 17241745 copia 7 5214 2.0 4.5 3.2 1.7 5255 chr2R 17236490 intron mbl + chr2R 17239118 intron mbl + chr2R 17241745 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-703 694 chr2R 17259114 17259123 chr2R 17259252 17259261 4 138 5.0 2.5 3.8 0.8 147 chr2R 17259114 intron mbl + chr2R 17259188 intron mbl + chr2R 17259261 intron mbl + chr2R_4_17255001 chr2R_17255001 RAL-703 695 chr2R 17299770 17299782 chr2R 17299964 17299984 7 208 5.0 1.5 3.2 1.7 214 chr2R 17299770 intron mbl + chr2R 17299877 intron mbl + chr2R 17299984 intron mbl + chr2R_7_17295001 chr2R_17295001 RAL-703 696 chr2R 17389254 17389302 chr2R 17389364 17389405 10 100 5.5 5.5 5.5 1.5 151 chr2R 17389254 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389405 intergenic CR44344 - chr2R_10_17385001 chr2R_17385001 RAL-703 697 chr2R 17485900 17485949 chr2R 17490690 17490736 F-element 10 4785 1.5 2.0 1.8 3.6 4836 chr2R 17485900 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490736 intron NT5E-2 + chr2R_10_17485001 chr2R_17485001 RAL-703 698 chr2R 17532224 17532243 chr2R 17532331 17532348 6 107 9.0 7.0 8.0 0.7 124 chr2R 17532224 intron Patronin - chr2R 17532286 intron Patronin - chr2R 17532348 intron Patronin - chr2R_6_17530001 chr2R_17530001 RAL-703 699 chr2R 17661364 17661396 chr2R 17661529 17661561 5 165 1.5 2.5 2.0 1.7 197 chr2R 17661364 intron CCHa1-R - chr2R 17661462 intron CCHa1-R - chr2R 17661561 intron CCHa1-R - chr2R_5_17660001 chr2R_17660001 RAL-703 700 chr2R 17708392 17708417 chr2R 17708482 17708518 4 96 0.5 0.0 0.2 3.3 126 chr2R 17708392 intron CG6424 - chr2R 17708455 intron CG6424 - chr2R 17708518 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-703 701 chr2R 17709965 17710007 chr2R 17710075 17710103 6 105 3.5 3.5 3.5 1.3 138 chr2R 17709965 intron CG6424 - chr2R 17710034 intron CG6424 - chr2R 17710103 intron CG6424 - chr2R_6_17710001 chr2R_17710001 RAL-703 702 chr2R 17782346 17782376 chr2R 17783569 17783599 pogo 5 1223 2.5 1.5 2.0 1.7 1253 chr2R 17782346 intergenic CG33981 -,fab1 - chr2R 17782972 intergenic not near genes chr2R 17783599 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-703 703 chr2R 18042807 18042996 chr2R 18042943 18043109 4 125 0.0 0.0 0.0 4.0 302 chr2R 18042807 3` UTR CG5773 - chr2R 18042958 3` UTR CG5773 - chr2R 18043109 3` UTR CG5773 - chr2R_4_18040001 chr2R_18040001 RAL-703 704 chr2R 18045654 18045701 chr2R 18046026 18046057 jockey 9 369 3.0 1.5 2.2 2.8 403 chr2R 18045654 intergenic not near genes chr2R 18045856 intergenic not near genes chr2R 18046057 intergenic CG5767 - chr2R_9_18045001 chr2R_18045001 RAL-703 705 chr2R 18111690 18111714 chr2R 18115550 18115602 F-element 5 3882 2.5 1.0 1.8 1.8 3912 chr2R 18111690 intergenic not near genes chr2R 18113646 intergenic not near genes chr2R 18115602 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-703 706 chr2R 18127365 18127393 chr2R 18127502 18127531 6 137 2.5 4.0 3.2 1.4 166 chr2R 18127365 intron Spn55B + chr2R 18127448 intron Spn55B + chr2R 18127531 intron Spn55B + chr2R_6_18125001 chr2R_18125001 RAL-703 707 chr2R 18289406 18289455 chr2R 18289528 18289557 4 117 3.0 3.0 3.0 1.0 151 chr2R 18289406 intron,intron sbb -,CG14502 + chr2R 18289482 intron,intron sbb -,CG14502 + chr2R 18289557 exon,intron sbb -,CG14502 + chr2R_4_18285001 chr2R_18285001 RAL-703 708 chr2R 18308265 18308315 chr2R 18308391 18308441 10 123 2.0 2.0 2.0 3.3 176 chr2R 18308265 intron sbb - chr2R 18308353 intron sbb - chr2R 18308441 intron sbb - chr2R_10_18305001 chr2R_18305001 RAL-703 709 chr2R 18358373 18358414 chr2R 18372605 18372646 roo 13 14230 5.0 6.5 5.8 1.9 14273 chr2R 18358373 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372646 intergenic not near genes chr2R_13_18365001 chr2R_18365001 RAL-703 710 chr2R 18408272 18408313 chr2R 18408412 18408454 11 138 6.0 3.0 4.5 2.0 182 chr2R 18408272 exon GstE8 + chr2R 18408363 exon GstE8 + chr2R 18408454 exon GstE8 + chr2R_11_18405001 chr2R_18405001 RAL-703 711 chr2R 18480441 18480486 chr2R 18480568 18480613 4 127 0.0 0.0 0.0 4.0 172 chr2R 18480441 intron CG30116 - chr2R 18480527 intron CG30116 - chr2R 18480613 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-703 712 chr2R 18486849 18486874 chr2R 18487109 18487139 8 275 2.0 3.0 2.5 2.3 290 chr2R 18486849 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487139 intron CG30116 - chr2R_8_18485001 chr2R_18485001 RAL-703 713 chr2R 18511584 18511614 chr2R 18511678 18511720 4 101 2.0 1.5 1.8 1.4 136 chr2R 18511584 intergenic not near genes chr2R 18511652 intergenic not near genes chr2R 18511720 intergenic not near genes chr2R_4_18510001 chr2R_18510001 RAL-703 714 chr2R 18575814 18575831 chr2R 18581984 18582035 3S18 13 6193 2.0 2.5 2.2 4.1 6221 chr2R 18575814 intron GEFmeso - chr2R 18578924 intron GEFmeso - chr2R 18582035 intron GEFmeso - chr2R_13_18575001 chr2R_18575001 RAL-703 715 chr2R 18590850 18590892 chr2R 18600020 18600064 roo 8 9172 4.0 4.5 4.2 1.5 9214 chr2R 18590850 intron GEFmeso - chr2R 18595457 intron GEFmeso - chr2R 18600064 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-703 716 chr2R 18608620 18608651 chr2R 18608715 18608747 7 93 1.0 1.5 1.2 3.2 127 chr2R 18608620 intron GEFmeso - chr2R 18608684 intron GEFmeso - chr2R 18608747 intron GEFmeso - chr2R_7_18605001 chr2R_18605001 RAL-703 717 chr2R 18646396 18646434 chr2R 18646561 18646599 5 161 4.0 4.0 4.0 1.0 203 chr2R 18646396 intron SP2637 - chr2R 18646498 intron SP2637 - chr2R 18646599 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-703 718 chr2R 18667731 18667758 chr2R 18667828 18667859 4 108 1.0 1.5 1.2 1.8 128 chr2R 18667731 3` UTR edl - chr2R 18667795 3` UTR edl - chr2R 18667859 exon edl - chr2R_4_18665001 chr2R_18665001 RAL-703 719 chr2R 18692881 18692915 chr2R 18692988 18693008 8 101 4.5 2.0 3.2 1.9 127 chr2R 18692881 intron Sik3 + chr2R 18692944 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_8_18690001 chr2R_18690001 RAL-703 720 chr2R 18808138 18808178 chr2R 18808233 18808274 6 93 3.0 1.0 2.0 2.0 136 chr2R 18808138 intergenic CG15096 - chr2R 18808206 intergenic CG15096 - chr2R 18808274 intergenic CG15096 - chr2R_6_18805001 chr2R_18805001 RAL-703 721 chr2R 18819026 18819066 chr2R 18819124 18819160 5 96 3.5 0.0 1.8 1.8 134 chr2R 18819026 intergenic Phb2 + chr2R 18819093 intergenic Phb2 + chr2R 18819160 intergenic Phb2 + chr2R_5_18815001 chr2R_18815001 RAL-703 722 chr2R 18835881 18835903 chr2R 18835983 18835987 4 95 4.0 0.0 2.0 1.3 106 chr2R 18835881 intron CG15083 + chr2R 18835934 intron CG15083 + chr2R 18835987 intron CG15083 + chr2R_4_18835001 chr2R_18835001 RAL-703 723 chr2R 18926500 18926525 chr2R 18926607 18926628 6 105 2.5 0.0 1.2 2.7 128 chr2R 18926500 intron sano + chr2R 18926564 intron sano + chr2R 18926628 intron sano + chr2R_6_18925001 chr2R_18925001 RAL-703 724 chr2R 18953151 18953187 chr2R 18953258 18953294 9 106 3.5 4.5 4.0 1.8 143 chr2R 18953151 intron sano + chr2R 18953222 intron sano + chr2R 18953294 intron sano + chr2R_9_18950001 chr2R_18950001 RAL-703 725 chr2R 18989003 18989047 chr2R 18989099 18989145 6 97 2.5 1.5 2.0 2.0 142 chr2R 18989003 intron tn + chr2R 18989074 intron tn + chr2R 18989145 intron tn + chr2R_6_18985001 chr2R_18985001 RAL-703 726 chr2R 19014598 19014643 chr2R 19014697 19014742 7 99 0.5 2.5 1.5 2.8 144 chr2R 19014598 intergenic not near genes chr2R 19014670 intergenic not near genes chr2R 19014742 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-703 727 chr2R 19026038 19026040 chr2R 19026157 19026161 4 120 6.0 0.0 3.0 1.0 123 chr2R 19026038 intron 5-HT1B - chr2R 19026100 intron 5-HT1B - chr2R 19026161 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-703 728 chr2R 19096908 19096946 chr2R 19097142 19097176 5 233 3.0 2.0 2.5 1.4 268 chr2R 19096908 intron 5-HT1A + chr2R 19097042 intron 5-HT1A + chr2R 19097176 intron 5-HT1A + chr2R_5_19095001 chr2R_19095001 RAL-703 729 chr2R 19168732 19168768 chr2R 19168829 19168871 8 97 2.0 4.0 3.0 2.0 139 chr2R 19168732 intron CG10737 + chr2R 19168802 intron CG10737 + chr2R 19168871 intron CG10737 + chr2R_8_19165001 chr2R_19165001 RAL-703 730 chr2R 19234831 19234863 chr2R 19234922 19234965 5 100 1.5 2.5 2.0 1.7 134 chr2R 19234831 intron cora + chr2R 19234898 intron cora + chr2R 19234965 intron cora + chr2R_5_19230001 chr2R_19230001 RAL-703 731 chr2R 19300950 19300993 chr2R 19301053 19301096 9 103 1.5 2.5 2.0 3.0 146 chr2R 19300950 intron Tab2 + chr2R 19301023 intron Tab2 + chr2R 19301096 intron Tab2 + chr2R_9_19300001 chr2R_19300001 RAL-703 732 chr2R 19479673 19479700 chr2R 19479863 19479914 5 209 2.0 1.5 1.8 1.8 241 chr2R 19479673 intron par-1 + chr2R 19479794 intron par-1 + chr2R 19479914 intron par-1 + chr2R_5_19475001 chr2R_19475001 RAL-703 733 chr2R 19582921 19582960 chr2R 19583225 19583269 4 304 3.5 4.0 3.8 0.8 348 chr2R 19582921 intron sm - chr2R 19583095 intron sm - chr2R 19583269 intron sm - chr2R_4_19580001 chr2R_19580001 RAL-703 734 chr2R 19601252 19601300 chr2R 19601362 19601395 5 104 1.0 4.0 2.5 1.4 143 chr2R 19601252 intron sm - chr2R 19601324 intron sm - chr2R 19601395 intron sm - chr2R_5_19600001 chr2R_19600001 RAL-703 735 chr2R 19639568 19639592 chr2R 19639664 19639688 4 94 2.5 2.0 2.2 1.2 120 chr2R 19639568 intergenic not near genes chr2R 19639628 intergenic not near genes chr2R 19639688 intergenic not near genes chr2R_4_19635001 chr2R_19635001 RAL-703 736 chr2R 19776576 19776618 chr2R 19779917 19779927 jockey 5 3335 3.5 4.0 3.8 1.0 3351 chr2R 19776576 intergenic not near genes chr2R 19778252 intergenic not near genes chr2R 19779927 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-703 737 chr2R 19872414 19872453 chr2R 19872594 19872625 7 177 2.0 5.0 3.5 1.6 211 chr2R 19872414 intergenic not near genes chr2R 19872520 intergenic not near genes chr2R 19872625 intergenic not near genes chr2R_7_19870001 chr2R_19870001 RAL-703 738 chr2R 19926102 19926126 chr2R 19926713 19926736 4 611 3.0 4.5 3.8 0.8 634 chr2R 19926102 intergenic CR44626 - chr2R 19926419 intergenic not near genes chr2R 19926736 intergenic not near genes chr2R_4_19925001 chr2R_19925001 RAL-703 739 chr2R 19957430 19957455 chr2R 19962640 19962675 copia 6 5213 3.0 3.0 3.0 1.5 5245 chr2R 19957430 intergenic CG44623 + chr2R 19960052 intergenic not near genes chr2R 19962675 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-703 740 chr2R 20008164 20008210 chr2R 20008273 20008314 9 103 3.5 2.0 2.8 2.4 150 chr2R 20008164 intergenic not near genes chr2R 20008239 intergenic not near genes chr2R 20008314 intergenic not near genes chr2R_9_20005001 chr2R_20005001 RAL-703 741 chr2R 20016044 20016066 chr2R 20016117 20016171 7 99 2.0 3.5 2.8 1.8 127 chr2R 20016044 intergenic CR44630 - chr2R 20016108 intergenic CR44630 - chr2R 20016171 intergenic CR44630 - chr2R_7_20015001 chr2R_20015001 RAL-703 742 chr2R 20069226 20069269 chr2R 20071875 20071914 opus 9 2649 2.0 3.0 2.5 2.6 2688 chr2R 20069226 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071914 intergenic not near genes chr2R_9_20070001 chr2R_20070001 RAL-703 743 chr2R 20087983 20088028 chr2R 20088111 20088156 1360 8 123 2.5 3.0 2.8 2.1 173 chr2R 20087983 intergenic not near genes chr2R 20088070 intergenic not near genes chr2R 20088156 intergenic not near genes chr2R_8_20085001 chr2R_20085001 RAL-703 744 chr2R 20106126 20106161 chr2R 20106235 20106281 9 114 1.5 2.0 1.8 3.2 155 chr2R 20106126 intergenic not near genes chr2R 20106204 intergenic not near genes chr2R 20106281 intergenic not near genes chr2R_9_20105001 chr2R_20105001 RAL-703 745 chr2R 20118873 20118902 chr2R 20118960 20119004 5 99 3.0 3.5 3.2 1.2 131 chr2R 20118873 intergenic not near genes chr2R 20118938 intergenic not near genes chr2R 20119004 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-703 746 chr2R 20223946 20223982 chr2R 20224048 20224087 5 104 2.0 2.5 2.2 1.6 141 chr2R 20223946 intergenic not near genes chr2R 20224016 intergenic not near genes chr2R 20224087 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-703 747 chr2R 20523037 20523057 chr2R 20523149 20523172 4 115 6.5 4.5 5.5 0.6 135 chr2R 20523037 intergenic not near genes chr2R 20523104 intergenic not near genes chr2R 20523172 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-703 748 chr2R 20528737 20528786 chr2R 20528931 20528975 9 192 1.0 2.0 1.5 3.6 238 chr2R 20528737 exon CG30151 - chr2R 20528856 exon CG30151 - chr2R 20528975 exon CG30151 - chr2R_9_20525001 chr2R_20525001 RAL-703 749 chr2R 20541972 20542016 chr2R 20542070 20542097 7 95 5.0 4.0 4.5 1.3 125 chr2R 20541972 intergenic not near genes chr2R 20542034 intergenic not near genes chr2R 20542097 intergenic not near genes chr2R_7_20540001 chr2R_20540001 RAL-703 750 chr2R 20702659 20702692 chr2R 20702753 20702788 5 95 1.5 2.5 2.0 1.7 129 chr2R 20702659 intron dpr + chr2R 20702724 intron dpr + chr2R 20702788 intron dpr + chr2R_5_20700001 chr2R_20700001 RAL-703 751 chr2R 20739429 20739466 chr2R 20744215 20744253 F-element 4 4787 1.5 3.5 2.5 1.1 4824 chr2R 20739429 intron dpr + chr2R 20741841 intron dpr + chr2R 20744253 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-703 752 chr2R 20783293 20783330 chr2R 20788085 20788117 F-element 6 4789 2.0 5.0 3.5 1.3 4824 chr2R 20783293 intergenic not near genes chr2R 20785705 intergenic not near genes chr2R 20788117 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-703 753 chr2R 20803773 20803821 chr2R 20803874 20803917 11 95 6.0 1.0 3.5 2.4 144 chr2R 20803773 intergenic not near genes chr2R 20803845 intergenic not near genes chr2R 20803917 intergenic not near genes chr2R_11_20800001 chr2R_20800001 RAL-703 754 chr2R 20834811 20834829 chr2R 20834923 20834951 5 121 3.5 1.5 2.5 1.4 140 chr2R 20834811 intron,intron insc -,sktl - chr2R 20834881 intron,intron insc -,sktl - chr2R 20834951 intron,intron insc -,sktl - chr2R_5_20830001 chr2R_20830001 RAL-703 755 chr2R 20865499 20865532 chr2R 20865576 20865616 6 86 2.5 2.5 2.5 1.7 117 chr2R 20865499 intron CG15227 + chr2R 20865558 intron CG15227 + chr2R 20865616 intron CG15227 + chr2R_6_20865001 chr2R_20865001 RAL-703 756 chr2R 20870925 20870957 chr2R 20871153 20871182 10 228 0.5 1.5 1.0 5.0 257 chr2R 20870925 intron Ipk1 + chr2R 20871054 intron Ipk1 + chr2R 20871182 intron Ipk1 + chr2R_10_20870001 chr2R_20870001 RAL-703 757 chr2R 20880852 20880893 chr2R 20880945 20880963 8 86 4.0 4.5 4.2 1.5 111 chr2R 20880852 exon Cib2 + chr2R 20880908 intron Cib2 + chr2R 20880963 intron Cib2 + chr2R_8_20880001 chr2R_20880001 RAL-703 758 chr2R 20962910 20962938 chr2R 20963007 20963051 8 112 1.5 2.5 2.0 2.7 141 chr2R 20962910 intergenic not near genes chr2R 20962980 intergenic not near genes chr2R 20963051 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-703 759 chr2R 21110773 21110823 chr2R 21110886 21110936 11 112 5.0 1.5 3.2 2.6 163 chr2R 21110773 intron ktub + chr2R 21110854 intron ktub + chr2R 21110936 intron ktub + chr2R_11_21110001 chr2R_21110001 RAL-703 760 chr2R 21188199 21188248 chr2R 21188299 21188348 7 96 4.0 3.0 3.5 1.6 149 chr2R 21188199 exon tud + chr2R 21188274 intron tud + chr2R 21188348 intron tud + chr2R_7_21185001 chr2R_21185001 RAL-703 761 chr2R 21370497 21370531 chr2R 21370624 21370635 7 122 3.0 2.0 2.5 2.0 138 chr2R 21370497 intron cv-2 - chr2R 21370566 intron cv-2 - chr2R 21370635 intron cv-2 - chr2R_7_21370001 chr2R_21370001 RAL-703 762 chr2R 21370837 21370852 chr2R 21371023 21371039 4 186 2.0 0.5 1.2 1.8 202 chr2R 21370837 intron cv-2 - chr2R 21370938 intron cv-2 - chr2R 21371039 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-703 763 chr2R 21417026 21417067 chr2R 21417112 21417166 6 96 2.5 1.5 2.0 2.0 140 chr2R 21417026 intron Sdc - chr2R 21417096 intron Sdc - chr2R 21417166 intron Sdc - chr2R_6_21415001 chr2R_21415001 RAL-703 764 chr2R 21472300 21472334 chr2R 21472390 21472430 7 90 1.0 3.5 2.2 2.2 130 chr2R 21472300 intron Sdc - chr2R 21472365 intron Sdc - chr2R 21472430 intron Sdc - chr2R_7_21470001 chr2R_21470001 RAL-703 765 chr2R 21486664 21486669 chr2R 21486781 21486786 4 117 5.5 0.5 3.0 1.0 122 chr2R 21486664 exon Sara + chr2R 21486725 3` UTR Sara + chr2R 21486786 3` UTR Sara + chr2R_4_21485001 chr2R_21485001 RAL-703 766 chr2R 21486675 21486713 chr2R 21486778 21486830 11 112 1.0 0.5 0.8 6.1 155 chr2R 21486675 exon Sara + chr2R 21486752 3` UTR Sara + chr2R 21486830 3` UTR Sara + chr2R_11_21485001 chr2R_21485001 RAL-703 767 chr2R 21521744 21521783 chr2R 21521846 21521886 6 102 1.5 2.0 1.8 2.1 142 chr2R 21521744 exon CG30289 - chr2R 21521815 exon CG30289 - chr2R 21521886 intergenic CG30289 - chr2R_6_21520001 chr2R_21520001 RAL-703 768 chr2R 21738272 21738310 chr2R 21747440 21747446 roo 5 9165 1.5 5.5 3.5 1.1 9174 chr2R 21738272 intergenic not near genes chr2R 21742859 intergenic not near genes chr2R 21747446 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-703 769 chr2R 21753066 21753117 chr2R 21753571 21753594 roo 7 498 1.0 1.5 1.2 3.2 528 chr2R 21753066 intergenic not near genes chr2R 21753330 intergenic not near genes chr2R 21753594 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-703 770 chr2R 21805823 21805859 chr2R 21805920 21805955 10 97 3.5 2.0 2.8 2.6 132 chr2R 21805823 intergenic not near genes chr2R 21805889 intergenic not near genes chr2R 21805955 intergenic not near genes chr2R_10_21805001 chr2R_21805001 RAL-703 771 chr2R 21946749 21946803 chr2R 21946865 21946884 8 111 1.5 3.5 2.5 2.3 135 chr2R 21946749 intergenic Fili + chr2R 21946816 intergenic not near genes chr2R 21946884 intergenic not near genes chr2R_8_21945001 chr2R_21945001 RAL-703 772 chr2R 22009754 22009806 chr2R 22009850 22009897 7 90 1.0 4.5 2.8 1.8 143 chr2R 22009754 intron CG34370 - chr2R 22009826 intron CG34370 - chr2R 22009897 intron CG34370 - chr2R_7_22005001 chr2R_22005001 RAL-703 773 chr2R 22012980 22012999 chr2R 22013090 22013112 4 110 2.0 0.5 1.2 1.8 132 chr2R 22012980 intron CG34370 - chr2R 22013046 intron CG34370 - chr2R 22013112 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-703 774 chr2R 22072691 22072712 chr2R 22072796 22072817 8 105 3.0 4.5 3.8 1.7 126 chr2R 22072691 intron CG11474 - chr2R 22072754 intron CG11474 - chr2R 22072817 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-703 775 chr2R 22102096 22102136 chr2R 22102204 22102243 6 105 2.0 2.0 2.0 2.0 147 chr2R 22102096 intergenic not near genes chr2R 22102170 intergenic not near genes chr2R 22102243 intergenic not near genes chr2R_6_22100001 chr2R_22100001 RAL-703 776 chr2R 22142641 22142695 chr2R 22142775 22142826 7 129 1.5 2.5 2.0 2.3 185 chr2R 22142641 intron a + chr2R 22142734 intron a + chr2R 22142826 intron a + chr2R_7_22140001 chr2R_22140001 RAL-703 777 chr2R 22185670 22185694 chr2R 22185789 22185799 5 116 3.0 1.5 2.2 1.6 129 chr2R 22185670 3` UTR MED16 + chr2R 22185734 3` UTR MED16 + chr2R 22185799 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-703 778 chr2R 22290059 22290098 chr2R 22290163 22290178 4 98 3.5 1.0 2.2 1.2 119 chr2R 22290059 intergenic not near genes chr2R 22290118 intergenic not near genes chr2R 22290178 intergenic not near genes chr2R_4_22290001 chr2R_22290001 RAL-703 779 chr2R 22297707 22297736 chr2R 22297794 22297832 5 90 0.0 3.0 1.5 2.0 125 chr2R 22297707 intergenic not near genes chr2R 22297770 intergenic wdp - chr2R 22297832 intergenic wdp - chr2R_5_22295001 chr2R_22295001 RAL-703 780 chr2R 22349677 22349717 chr2R 22351477 22351512 jockey 5 1799 2.5 5.0 3.8 1.0 1835 chr2R 22349677 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351512 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-703 781 chr2R 22360364 22360394 chr2R 22360816 22360830 jockey 6 448 2.5 2.5 2.5 1.7 466 chr2R 22360364 intron Liprin-gamma - chr2R 22360597 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-703 782 chr2R 22380349 22380385 chr2R 22380460 22380494 7 110 2.5 0.5 1.5 2.8 145 chr2R 22380349 intron wrapper + chr2R 22380422 intron wrapper + chr2R 22380494 intron wrapper + chr2R_7_22380001 chr2R_22380001 RAL-703 783 chr2R 22460362 22460404 chr2R 22460461 22460503 9 94 1.5 2.5 2.0 3.0 141 chr2R 22460362 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460503 intron CG10384 + chr2R_9_22460001 chr2R_22460001 RAL-703 784 chr2R 22465188 22465235 chr2R 22465515 22465515 12 321 5.0 0.0 2.5 3.4 327 chr2R 22465188 intron CG10384 + chr2R 22465352 intron CG10384 + chr2R 22465515 intron CG10384 + chr2R_12_22465001 chr2R_22465001 RAL-703 785 chr2R 22525752 22525777 chr2R 22529307 22529352 jockey 6 3572 3.5 1.5 2.5 1.7 3600 chr2R 22525752 intron px - chr2R 22527552 intron px - chr2R 22529352 intron px - chr2R_6_22525001 chr2R_22525001 RAL-703 786 chr2R 22742866 22742908 chr2R 22744686 22744726 6 1818 11.5 18.0 14.8 0.4 1860 chr2R 22742866 3` UTR CG42260 - chr2R 22743796 3` UTR CG42260 - chr2R 22744726 exon CG42260 - chr2R_6_22740001 chr2R_22740001 RAL-703 787 chr2R 22756607 22756645 chr2R 22756710 22756743 6 97 6.0 0.0 3.0 1.5 136 chr2R 22756607 intron,intron CG42260 -,CR30267 + chr2R 22756675 intron,intron CG42260 -,CR30267 + chr2R 22756743 intron,intron CG42260 -,CR30267 + chr2R_6_22755001 chr2R_22755001 RAL-703 788 chr2R 22774946 22774991 chr2R 22775380 22775430 jockey 6 436 2.0 2.0 2.0 2.0 484 chr2R 22774946 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775430 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-703 789 chr2R 22941804 22941854 chr2R 22941903 22941944 8 97 0.0 2.5 1.2 3.6 140 chr2R 22941804 intergenic CG42694 + chr2R 22941874 intergenic CG42694 + chr2R 22941944 5` UTR CG42694 + chr2R_8_22940001 chr2R_22940001 RAL-703 790 chr2R 22988303 22988318 chr2R 22988404 22988419 4 101 4.0 7.5 5.8 0.6 116 chr2R 22988303 intron twi + chr2R 22988361 intron twi + chr2R 22988419 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-703 791 chr2R 22990467 22990499 chr2R 22990569 22990585 6 98 10.5 5.0 7.8 0.7 118 chr2R 22990467 intron twi + chr2R 22990526 intron twi + chr2R 22990585 intron twi + chr2R_6_22990001 chr2R_22990001 RAL-703 792 chr2R 23127485 23127507 chr2R 23127602 23127623 5 115 4.5 4.0 4.2 1.0 138 chr2R 23127485 intergenic CR44455 - chr2R 23127554 intergenic CR44455 - chr2R 23127623 3` UTR CR44455 - chr2R_5_23125001 chr2R_23125001 RAL-703 793 chr2R 23184290 23184293 chr2R 23184370 23184381 4 88 0.0 4.5 2.2 1.2 91 chr2R 23184290 intron,intron CG34371 -,CG13539 + chr2R 23184336 intron,intron CG34371 -,CG13539 + chr2R 23184381 intron,intron CG34371 -,CG13539 + chr2R_4_23180001 chr2R_23180001 RAL-703 794 chr2R 23188536 23188581 chr2R 23188634 23188679 14 95 1.5 3.5 2.5 4.0 143 chr2R 23188536 intron CG34371 - chr2R 23188608 intron CG34371 - chr2R 23188679 intron CG34371 - chr2R_14_23185001 chr2R_23185001 RAL-703 795 chr2R 23218988 23219019 chr2R 23219246 23219258 6 251 4.0 0.0 2.0 2.0 270 chr2R 23218988 intergenic not near genes chr2R 23219123 intergenic not near genes chr2R 23219258 intergenic not near genes chr2R_6_23215001 chr2R_23215001 RAL-703 796 chr2R 23225960 23225985 chr2R 23226084 23226108 4 124 2.0 3.0 2.5 1.1 148 chr2R 23225960 intergenic not near genes chr2R 23226034 intergenic not near genes chr2R 23226108 intergenic not near genes chr2R_4_23225001 chr2R_23225001 RAL-703 797 chr2R 23402598 23402639 chr2R 23407694 23407704 flea 9 5091 2.0 5.0 3.5 2.0 5106 chr2R 23402598 intergenic CG3520 - chr2R 23405151 intergenic not near genes chr2R 23407704 intergenic not near genes chr2R_9_23405001 chr2R_23405001 RAL-703 798 chr2R 23475643 23475654 chr2R 23475725 23475737 5 94 0.5 0.5 0.5 3.3 94 chr2R 23475643 intron CG43795 + chr2R 23475690 intron CG43795 + chr2R 23475737 intron,3` UTR CG43795 +,CG13557 - chr2R_5_23475001 chr2R_23475001 RAL-703 799 chr2R 23607036 23607183 chr2R 23607120 23607295 13 99 1.0 1.0 1.0 6.5 259 chr2R 23607036 intron CG17664 - chr2R 23607166 intron CG17664 - chr2R 23607295 intron CG17664 - chr2R_13_23605001 chr2R_23605001 RAL-703 800 chr2R 23784450 23784507 chr2R 23784548 23784605 15 96 1.0 0.0 0.5 10.0 155 chr2R 23784450 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784605 intron CG9850 - chr2R_15_23780001 chr2R_23780001 RAL-703 801 chr2R 23914293 23914331 chr2R 23921930 23921965 412 6 7632 2.5 5.0 3.8 1.2 7672 chr2R 23914293 exon kcc + chr2R 23918129 intron kcc + chr2R 23921965 exon kcc + chr2R_6_23915001 chr2R_23915001 RAL-703 802 chr2R 23986501 23986546 chr2R 23986601 23986645 8 98 2.0 3.5 2.8 2.1 144 chr2R 23986501 intron Phm - chr2R 23986573 intron Phm - chr2R 23986645 intron,5` UTR Phm -,CG30178 + chr2R_8_23985001 chr2R_23985001 RAL-703 803 chr2R 24031375 24031412 chr2R 24031464 24031500 8 99 1.0 4.5 2.8 2.1 125 chr2R 24031375 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031500 intergenic Chi -,CG30172 - chr2R_8_24030001 chr2R_24030001 RAL-703 804 chr2R 24045853 24045904 chr2R 24045956 24045988 15 99 0.5 2.0 1.2 6.8 135 chr2R 24045853 intron tsr - chr2R 24045920 intron tsr - chr2R 24045988 intron tsr - chr2R_15_24045001 chr2R_24045001 RAL-703 805 chr2R 24177215 24177243 chr2R 24184720 24184730 412 10 7502 7.5 1.5 4.5 1.8 7515 chr2R 24177215 3` UTR Nop60B + chr2R 24180972 intron Nop60B + chr2R 24184730 3` UTR Nop60B + chr2R_10_24180001 chr2R_24180001 RAL-703 806 chr2R 24246755 24246803 chr2R 24246855 24246896 10 99 2.5 1.5 2.0 3.3 141 chr2R 24246755 intron nord + chr2R 24246826 intron nord + chr2R 24246896 intron nord + chr2R_10_24245001 chr2R_24245001 RAL-703 807 chr2R 24353418 24353443 chr2R 24361800 24361823 roo 5 8382 5.0 6.0 5.5 0.8 8405 chr2R 24353418 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-703 808 chr2R 24430924 24430949 chr2R 24431021 24431039 7 102 0.0 4.5 2.2 2.2 115 chr2R 24430924 intergenic CG15873 -,Pgam5-2 - chr2R 24430982 intergenic CG15873 -,Pgam5-2 - chr2R 24431039 intergenic Pgam5-2 -,CG15873 - chr2R_7_24430001 chr2R_24430001 RAL-703 809 chr2R 24548902 24548954 chr2R 24549004 24549029 14 98 1.0 0.5 0.8 7.8 127 chr2R 24548902 intron,intron CG4622 -,ITP + chr2R 24548966 intron,intron CG4622 -,ITP + chr2R 24549029 intron,intron CG4622 -,ITP + chr2R_14_24545001 chr2R_24545001 RAL-703 810 chr2R 24590076 24590142 chr2R 24590204 24590217 11 119 0.0 4.5 2.2 3.4 141 chr2R 24590076 intron pio + chr2R 24590146 intron pio + chr2R 24590217 intron pio + chr2R_11_24590001 chr2R_24590001 RAL-703 811 chr2R 24647571 24647588 chr2R 24655148 24655159 412 4 7571 7.0 4.5 5.8 0.6 7588 chr2R 24647571 intergenic not near genes chr2R 24651365 intergenic not near genes chr2R 24655159 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-703 812 chr2R 24704667 24704713 chr2R 24704766 24704813 8 95 2.5 3.5 3.0 2.0 146 chr2R 24704667 intron Mid1 - chr2R 24704740 intron Mid1 - chr2R 24704813 intron Mid1 - chr2R_8_24700001 chr2R_24700001 RAL-703 813 chr2R 24722356 24722397 chr2R 24722456 24722499 5 102 4.0 4.5 4.2 1.0 143 chr2R 24722356 intron Mid1 - chr2R 24722428 intron Mid1 - chr2R 24722499 intron Mid1 - chr2R_5_24720001 chr2R_24720001 RAL-703 814 chr2R 24727883 24727913 chr2R 24735402 24735429 mdg1 7 7516 0.0 3.0 1.5 2.8 7546 chr2R 24727883 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735429 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-703 815 chr2R 24763594 24763643 chr2R 24765588 24765622 G2 15 1989 2.5 4.0 3.2 3.6 2028 chr2R 24763594 exon CG3894 + chr2R 24764608 intron CG3894 + chr2R 24765622 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-703 816 chr2R 24767979 24768022 chr2R 24768081 24768127 12 103 1.0 3.0 2.0 4.0 148 chr2R 24767979 5` UTR GstE12 - chr2R 24768053 5` UTR GstE12 - chr2R 24768127 5` UTR GstE12 - chr2R_12_24765001 chr2R_24765001 RAL-703 817 chr2R 24859829 24859867 chr2R 24859935 24859971 9 99 0.5 3.5 2.0 3.0 142 chr2R 24859829 5` UTR CR44829 + chr2R 24859900 5` UTR CR44829 + chr2R 24859971 5` UTR CR44829 + chr2R_9_24855001 chr2R_24855001 RAL-703 818 chr2R 24884041 24884075 chr2R 24884132 24884177 8 98 2.0 1.0 1.5 3.2 136 chr2R 24884041 intron NKAIN + chr2R 24884109 intron NKAIN + chr2R 24884177 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-703 819 chr2R 25078982 25079016 chr2R 25079114 25079129 8 138 3.0 1.5 2.2 2.5 147 chr2R 25078982 intron gol - chr2R 25079056 intron gol - chr2R 25079129 intron gol - chr2R_8_25075001 chr2R_25075001 RAL-703 820 chr2R 25104795 25104813 chr2R 25104909 25104927 4 113 1.5 5.0 3.2 1.0 132 chr2R 25104795 intron lov - chr2R 25104861 intron lov - chr2R 25104927 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-703 821 chr2R 25116338 25116348 chr2R 25116457 25116466 5 118 9.0 0.0 4.5 0.9 128 chr2R 25116338 intron lov - chr2R 25116402 intron lov - chr2R 25116466 intron lov - chr2R_5_25115001 chr2R_25115001 RAL-703 822 chr2R 25124439 25124484 chr2R 25124549 25124594 15 107 4.5 0.0 2.2 4.7 155 chr2R 25124439 intron lov - chr2R 25124516 intron lov - chr2R 25124594 intron lov - chr2R_15_25120001 chr2R_25120001 RAL-703 823 chr2R 25135252 25135292 chr2R 25135352 25135389 12 103 1.5 0.0 0.8 6.7 137 chr2R 25135252 intron lov - chr2R 25135320 intron lov - chr2R 25135389 intron lov - chr2R_12_25135001 chr2R_25135001 RAL-703 824 chr2R 25141641 25141669 chr2R 25159351 25159373 roo 5 17708 2.5 4.0 3.2 1.2 17732 chr2R 25141641 intergenic not near genes chr2R 25150507 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-703 825 chr2R 25167104 25167136 chr2R 25167204 25167236 5 93 3.5 2.0 2.8 1.3 132 chr2R 25167104 intergenic not near genes chr2R 25167170 intergenic CG34038 + chr2R 25167236 intergenic CG34038 + chr2R_5_25165001 chr2R_25165001 RAL-703 826 chr2R 25173563 25173579 chr2R 25173742 25173750 6 178 1.5 2.0 1.8 2.1 187 chr2R 25173563 intergenic PebII - chr2R 25173656 3` UTR PebII - chr2R 25173750 3` UTR PebII - chr2R_6_25170001 chr2R_25170001 RAL-703 827 chr3L 68961 69015 chr3L 69068 69122 7 105 2.0 2.5 2.2 2.2 161 chr3L 68961 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69122 intergenic CR44510 +,Lsp1gamma + chr3L_7_65001 chr3L_65001 RAL-703 828 chr3L 88727 88763 chr3L 90662 90703 7 1936 2.0 0.0 1.0 3.5 1976 chr3L 88727 intergenic not near genes chr3L 89715 intergenic not near genes chr3L 90703 intergenic not near genes chr3L_7_85001 chr3L_85001 RAL-703 829 chr3L 110192 110239 chr3L 119379 119426 roo 9 9186 4.0 3.0 3.5 2.0 9234 chr3L 110192 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119426 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-703 830 chr3L 365504 365549 chr3L 365610 365640 4 96 2.5 1.5 2.0 1.3 136 chr3L 365504 3` UTR CG1233 + chr3L 365572 3` UTR CG1233 + chr3L 365640 3` UTR CG1233 + chr3L_4_365001 chr3L_365001 RAL-703 831 chr3L 391915 391939 chr3L 392012 392051 8 107 0.0 3.0 1.5 3.2 136 chr3L 391915 intron trh - chr3L 391983 intron trh - chr3L 392051 intron,3` UTR trh -,CR45378 - chr3L_8_390001 chr3L_390001 RAL-703 832 chr3L 402668 402710 chr3L 409740 409766 297 8 7068 4.0 2.5 3.2 1.9 7098 chr3L 402668 intergenic not near genes chr3L 406217 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-703 833 chr3L 459965 460008 chr3L 460062 460086 15 92 4.0 3.5 3.8 3.1 121 chr3L 459965 intron klar - chr3L 460026 intron klar - chr3L 460086 intron klar - chr3L_15_460001 chr3L_460001 RAL-703 834 chr3L 514264 514292 chr3L 514360 514389 4 97 5.0 3.0 4.0 0.8 125 chr3L 514264 intron klar - chr3L 514326 intron klar - chr3L 514389 intron klar - chr3L_4_510001 chr3L_510001 RAL-703 835 chr3L 530476 530487 chr3L 530536 530554 6 81 2.5 3.0 2.8 1.6 78 chr3L 530476 intron klar - chr3L 530515 intron klar - chr3L 530554 intron klar - chr3L_6_530001 chr3L_530001 RAL-703 836 chr3L 705867 705929 chr3L 705996 706045 6 122 0.0 3.0 1.5 2.4 178 chr3L 705867 intergenic CG13895 -,CR44514 + chr3L 705956 3` UTR CG13895 - chr3L 706045 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-703 837 chr3L 832584 832634 chr3L 832681 832719 15 93 3.0 4.0 3.5 3.3 135 chr3L 832584 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832652 intron CG13900 - chr3L 832719 exon CG13900 - chr3L_15_830001 chr3L_830001 RAL-703 838 chr3L 857989 858011 chr3L 866480 866480 Tirant 7 8486 7.0 2.5 4.8 1.2 8491 chr3L 857989 intergenic not near genes chr3L 862234 intergenic not near genes chr3L 866480 intergenic CG12502 + chr3L_7_860001 chr3L_860001 RAL-703 839 chr3L 875641 875693 chr3L 875744 875799 9 105 2.5 1.0 1.8 3.2 158 chr3L 875641 intron CG32479 + chr3L 875720 intron CG32479 + chr3L 875799 intron CG32479 + chr3L_9_875001 chr3L_875001 RAL-703 840 chr3L 925157 925209 chr3L 932603 932655 mdg1 14 7443 5.0 2.0 3.5 3.1 7498 chr3L 925157 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932655 intron Glut1 + chr3L_14_925001 chr3L_925001 RAL-703 841 chr3L 933913 933940 chr3L 934033 934063 8 121 1.5 5.5 3.5 1.8 150 chr3L 933913 intron Glut1 + chr3L 933988 intron Glut1 + chr3L 934063 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-703 842 chr3L 939763 939786 chr3L 940894 940927 jockey 4 1138 6.0 3.5 4.8 0.7 1164 chr3L 939763 intron Glut1 + chr3L 940345 intron Glut1 + chr3L 940927 intron Glut1 + chr3L_4_940001 chr3L_940001 RAL-703 843 chr3L 961000 961042 chr3L 961113 961143 4 110 1.0 1.0 1.0 2.0 143 chr3L 961000 intron Glut1 + chr3L 961072 intron Glut1 + chr3L 961143 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-703 844 chr3L 976552 976567 chr3L 976698 976712 5 145 2.0 4.5 3.2 1.2 160 chr3L 976552 intron Glut1 + chr3L 976632 intron Glut1 + chr3L 976712 intron Glut1 + chr3L_5_975001 chr3L_975001 RAL-703 845 chr3L 1003034 1003080 chr3L 1003131 1003177 16 94 3.0 5.5 4.2 3.1 143 chr3L 1003034 intron trio - chr3L 1003106 intron trio - chr3L 1003177 intron trio - chr3L_16_1000001 chr3L_1000001 RAL-703 846 chr3L 1145229 1145250 chr3L 1145325 1145349 5 98 5.0 0.0 2.5 1.4 120 chr3L 1145229 intron bab2 - chr3L 1145289 intron bab2 - chr3L 1145349 intron bab2 - chr3L_5_1145001 chr3L_1145001 RAL-703 847 chr3L 1154120 1154152 chr3L 1163278 1163322 roo 5 9166 3.5 2.0 2.8 1.3 9202 chr3L 1154120 intron bab2 - chr3L 1158721 intron bab2 - chr3L 1163322 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-703 848 chr3L 1202334 1202361 chr3L 1202419 1202442 5 87 3.5 4.0 3.8 1.0 108 chr3L 1202334 intron,exon mwh +,CG32335 - chr3L 1202388 intron,exon mwh +,CG32335 - chr3L 1202442 intron,exon mwh +,CG32335 - chr3L_5_1200001 chr3L_1200001 RAL-703 849 chr3L 1219601 1219620 chr3L 1227331 1227368 412 4 7742 2.5 3.5 3.0 1.0 7767 chr3L 1219601 intron mwh + chr3L 1223484 intron mwh + chr3L 1227368 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-703 850 chr3L 1260124 1260159 chr3L 1260224 1260259 10 100 2.5 2.0 2.2 3.1 135 chr3L 1260124 intron CG9134 + chr3L 1260192 intron CG9134 + chr3L 1260259 intron CG9134 + chr3L_10_1260001 chr3L_1260001 RAL-703 851 chr3L 1415771 1415806 chr3L 1415863 1415879 10 90 1.0 3.0 2.0 3.3 108 chr3L 1415771 intron Ptp61F - chr3L 1415825 intron Ptp61F - chr3L 1415879 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-703 852 chr3L 1441367 1441403 chr3L 1441464 1441501 4 94 4.5 5.5 5.0 0.7 134 chr3L 1441367 intron Ptp61F - chr3L 1441434 intron Ptp61F - chr3L 1441501 intron Ptp61F - chr3L_4_1440001 chr3L_1440001 RAL-703 853 chr3L 1501982 1502013 chr3L 1502082 1502114 10 98 0.0 3.5 1.8 3.6 132 chr3L 1501982 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502114 intron pUf68 - chr3L_10_1500001 chr3L_1500001 RAL-703 854 chr3L 1505996 1506030 chr3L 1513592 1513647 17.6 8 7610 3.5 3.0 3.2 1.9 7651 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509822 intron,intron Psa +,cue - chr3L 1513647 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-703 855 chr3L 1534544 1534564 chr3L 1536140 1536156 6 1591 15.5 20.0 17.8 0.3 1612 chr3L 1534544 intergenic CG12091 - chr3L 1535350 3` UTR CG12091 - chr3L 1536156 exon CG12091 - chr3L_6_1535001 chr3L_1535001 RAL-703 856 chr3L 1684016 1684042 chr3L 1684114 1684115 4 91 2.0 2.5 2.2 1.2 99 chr3L 1684016 intron CG7991 + chr3L 1684066 intron CG7991 + chr3L 1684115 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-703 857 chr3L 1710674 1710715 chr3L 1710771 1710815 7 96 5.0 4.5 4.8 1.2 141 chr3L 1710674 intron CG7991 + chr3L 1710744 intron CG7991 + chr3L 1710815 intron CG7991 + chr3L_7_1710001 chr3L_1710001 RAL-703 858 chr3L 1737894 1737941 chr3L 1738006 1738055 6 116 1.0 0.0 0.5 4.0 161 chr3L 1737894 5` UTR CG18173 - chr3L 1737974 5` UTR CG18173 - chr3L 1738055 5` UTR CG18173 - chr3L_6_1735001 chr3L_1735001 RAL-703 859 chr3L 1805680 1805707 chr3L 1805873 1805891 8 188 4.5 1.5 3.0 2.0 211 chr3L 1805680 exon CG42676 + chr3L 1805786 intron CG42676 + chr3L 1805891 intron CG42676 + chr3L_8_1805001 chr3L_1805001 RAL-703 860 chr3L 1848623 1848637 chr3L 1848721 1848735 5 96 5.0 4.5 4.8 0.9 112 chr3L 1848623 intergenic not near genes chr3L 1848679 intergenic not near genes chr3L 1848735 intergenic not near genes chr3L_5_1845001 chr3L_1845001 RAL-703 861 chr3L 1848639 1848662 chr3L 1848718 1848760 7 94 4.0 3.5 3.8 1.5 121 chr3L 1848639 intergenic not near genes chr3L 1848700 intergenic not near genes chr3L 1848760 intergenic not near genes chr3L_7_1845001 chr3L_1845001 RAL-703 862 chr3L 1905354 1905373 chr3L 1905462 1905487 5 112 1.5 2.5 2.0 1.7 133 chr3L 1905354 intron CG1887 - chr3L 1905420 intron CG1887 - chr3L 1905487 intron CG1887 - chr3L_5_1905001 chr3L_1905001 RAL-703 863 chr3L 1922456 1922466 chr3L 1922537 1922543 5 86 7.0 9.5 8.2 0.5 87 chr3L 1922456 intron Dbx + chr3L 1922500 intron Dbx + chr3L 1922543 intron Dbx + chr3L_5_1920001 chr3L_1920001 RAL-703 864 chr3L 1924955 1925080 chr3L 1925113 1925183 4 118 0.5 0.5 0.5 2.7 228 chr3L 1924955 exon Dbx + chr3L 1925069 intron Dbx + chr3L 1925183 intron Dbx + chr3L_4_1925001 chr3L_1925001 RAL-703 865 chr3L 2139186 2139225 chr3L 2139286 2139322 9 96 6.0 3.5 4.8 1.6 136 chr3L 2139186 intron zormin - chr3L 2139254 intron zormin - chr3L 2139322 intron zormin - chr3L_9_2135001 chr3L_2135001 RAL-703 866 chr3L 2143014 2143038 chr3L 2143122 2143141 10 106 3.5 2.0 2.8 2.6 127 chr3L 2143014 intron zormin - chr3L 2143078 intron zormin - chr3L 2143141 intron zormin - chr3L_10_2140001 chr3L_2140001 RAL-703 867 chr3L 2168768 2168799 chr3L 2168877 2168910 7 106 5.5 6.0 5.8 1.0 142 chr3L 2168768 exon CG15879 - chr3L 2168839 intron CG15879 - chr3L 2168910 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-703 868 chr3L 2199790 2199821 chr3L 2199886 2199917 6 93 0.0 2.5 1.2 2.7 127 chr3L 2199790 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199917 intergenic not near genes chr3L_6_2195001 chr3L_2195001 RAL-703 869 chr3L 2307983 2308034 chr3L 2308109 2308134 11 119 1.5 4.0 2.8 2.9 151 chr3L 2307983 intergenic not near genes chr3L 2308058 intergenic not near genes chr3L 2308134 intergenic not near genes chr3L_11_2305001 chr3L_2305001 RAL-703 870 chr3L 2411317 2411344 chr3L 2411417 2411428 6 94 2.0 1.5 1.8 2.1 111 chr3L 2411317 intron CG45186 + chr3L 2411372 intron CG45186 + chr3L 2411428 intron CG45186 + chr3L_6_2410001 chr3L_2410001 RAL-703 871 chr3L 2415588 2415627 chr3L 2415684 2415723 4 94 2.0 1.5 1.8 1.4 135 chr3L 2415588 intron CG45186 + chr3L 2415656 intron CG45186 + chr3L 2415723 intron CG45186 + chr3L_4_2415001 chr3L_2415001 RAL-703 872 chr3L 2447489 2447534 chr3L 2456661 2456710 roo 5 9174 4.0 1.0 2.5 1.4 9221 chr3L 2447489 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456710 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-703 873 chr3L 2534614 2534634 chr3L 2534694 2534737 6 90 0.0 3.5 1.8 2.1 123 chr3L 2534614 intron Spn - chr3L 2534676 intron Spn - chr3L 2534737 exon Spn - chr3L_6_2530001 chr3L_2530001 RAL-703 874 chr3L 2683926 2683973 chr3L 2684022 2684069 7 94 2.5 2.5 2.5 2.0 143 chr3L 2683926 intron Fife - chr3L 2683998 intron Fife - chr3L 2684069 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-703 875 chr3L 2719518 2719559 chr3L 2719640 2719681 9 118 0.0 3.0 1.5 3.6 163 chr3L 2719518 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719681 3` UTR Mrtf - chr3L_9_2715001 chr3L_2715001 RAL-703 876 chr3L 2751437 2751462 chr3L 2755752 2755761 F-element 4 4311 3.5 3.5 3.5 0.9 4324 chr3L 2751437 intron Mrtf - chr3L 2753599 intron Mrtf - chr3L 2755761 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-703 877 chr3L 2801866 2801895 chr3L 2802008 2802044 7 146 4.5 2.5 3.5 1.6 178 chr3L 2801866 intron CG43444 - chr3L 2801955 intron CG43444 - chr3L 2802044 intron CG43444 - chr3L_7_2800001 chr3L_2800001 RAL-703 878 chr3L 2927822 2927869 chr3L 2936119 2936166 Tirant 4 8297 1.5 3.5 2.5 1.1 8344 chr3L 2927822 intron Shab + chr3L 2931994 intron Shab + chr3L 2936166 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-703 879 chr3L 3027588 3027630 chr3L 3028609 3028638 6 1018 2.0 3.5 2.8 1.6 1050 chr3L 3027588 intergenic not near genes chr3L 3028113 intergenic not near genes chr3L 3028638 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-703 880 chr3L 3061268 3061317 chr3L 3069870 3069917 Tirant 10 8595 1.0 2.0 1.5 4.0 8649 chr3L 3061268 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069917 intron CG32486 - chr3L_10_3065001 chr3L_3065001 RAL-703 881 chr3L 3080488 3080518 chr3L 3080588 3080619 4 101 1.5 3.5 2.5 1.1 131 chr3L 3080488 intron CG11486 + chr3L 3080554 intron CG11486 + chr3L 3080619 intron CG11486 + chr3L_4_3080001 chr3L_3080001 RAL-703 882 chr3L 3103444 3103471 chr3L 3103540 3103563 7 93 2.5 2.0 2.2 2.2 119 chr3L 3103444 intron Cht7 - chr3L 3103504 intron Cht7 - chr3L 3103563 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-703 883 chr3L 3259813 3259832 chr3L 3259933 3259950 4 118 0.0 5.5 2.8 1.1 137 chr3L 3259813 intron ckd + chr3L 3259882 intron ckd + chr3L 3259950 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-703 884 chr3L 3281434 3281445 chr3L 3281950 3281959 Doc 4 515 7.5 5.0 6.2 0.6 525 chr3L 3281434 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281959 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-703 885 chr3L 3281455 3281472 chr3L 3281938 3281987 Doc 9 498 4.0 3.5 3.8 1.9 532 chr3L 3281455 intron CG12017 + chr3L 3281721 intron CG12017 + chr3L 3281987 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-703 886 chr3L 3317512 3317562 chr3L 3317611 3317661 12 98 1.5 4.0 2.8 3.2 149 chr3L 3317512 intergenic Drsl5 + chr3L 3317586 intergenic PIG-C -,Drsl5 + chr3L 3317661 intergenic PIG-C - chr3L_12_3315001 chr3L_3315001 RAL-703 887 chr3L 3408927 3408941 chr3L 3409023 3409038 4 93 6.0 10.0 8.0 0.4 111 chr3L 3408927 intron sty - chr3L 3408982 intron sty - chr3L 3409038 intron sty - chr3L_4_3405001 chr3L_3405001 RAL-703 888 chr3L 3470143 3470187 chr3L 3470239 3470283 8 93 1.0 2.0 1.5 3.2 140 chr3L 3470143 intron CG14971 - chr3L 3470213 intron CG14971 - chr3L 3470283 intron CG14971 - chr3L_8_3470001 chr3L_3470001 RAL-703 889 chr3L 3475058 3475102 chr3L 3475521 3475546 jockey 7 460 3.0 2.0 2.5 2.0 488 chr3L 3475058 intron CG42324 + chr3L 3475302 intron CG42324 + chr3L 3475546 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-703 890 chr3L 3484268 3484312 chr3L 3484380 3484424 5 112 2.0 2.5 2.2 1.6 156 chr3L 3484268 intron,exon CG42324 +,CG43074 - chr3L 3484346 intron,exon CG42324 +,CG43074 - chr3L 3484424 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-703 891 chr3L 3544407 3544418 chr3L 3544537 3544548 7 130 0.0 6.0 3.0 1.8 141 chr3L 3544407 intron Eip63E + chr3L 3544478 intron Eip63E + chr3L 3544548 intron Eip63E + chr3L_7_3540001 chr3L_3540001 RAL-703 892 chr3L 3573179 3573193 chr3L 3573264 3573283 4 94 1.0 3.0 2.0 1.3 104 chr3L 3573179 intron Eip63E + chr3L 3573231 intron Eip63E + chr3L 3573283 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-703 893 chr3L 3601282 3601322 chr3L 3606613 3606653 copia 5 5327 3.0 0.0 1.5 2.0 5371 chr3L 3601282 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606653 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-703 894 chr3L 3685276 3685319 chr3L 3685455 3685499 7 178 1.0 1.0 1.0 3.5 223 chr3L 3685276 intergenic not near genes chr3L 3685388 intergenic not near genes chr3L 3685499 intergenic not near genes chr3L_7_3685001 chr3L_3685001 RAL-703 895 chr3L 3737934 3737955 chr3L 3738032 3738060 4 102 5.0 4.0 4.5 0.7 126 chr3L 3737934 intron CG32264 - chr3L 3737997 intron CG32264 - chr3L 3738060 intron CG32264 - chr3L_4_3735001 chr3L_3735001 RAL-703 896 chr3L 3763741 3763754 chr3L 3763841 3763854 4 100 4.5 0.0 2.2 1.2 113 chr3L 3763741 intron CG32264 - chr3L 3763798 intron CG32264 - chr3L 3763854 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-703 897 chr3L 3797239 3797265 chr3L 3797342 3797368 4 103 1.5 3.5 2.5 1.1 129 chr3L 3797239 intron CG32264 - chr3L 3797304 intron CG32264 - chr3L 3797368 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-703 898 chr3L 3815033 3815081 chr3L 3815134 3815178 12 98 2.5 1.5 2.0 4.0 145 chr3L 3815033 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815178 intron,intron Scsalpha +,CR43932 - chr3L_12_3815001 chr3L_3815001 RAL-703 899 chr3L 3889119 3889142 chr3L 3889222 3889244 8 100 3.0 3.0 3.0 2.0 125 chr3L 3889119 intergenic not near genes chr3L 3889182 intergenic not near genes chr3L 3889244 intergenic not near genes chr3L_8_3885001 chr3L_3885001 RAL-703 900 chr3L 3921381 3921416 chr3L 3921665 3921683 10 278 4.0 3.0 3.5 2.2 302 chr3L 3921381 intron Eip63F-1 - chr3L 3921532 intron Eip63F-1 - chr3L 3921683 intron Eip63F-1 - chr3L_10_3920001 chr3L_3920001 RAL-703 901 chr3L 3922794 3922826 chr3L 3922896 3922940 9 109 2.5 0.0 1.2 4.1 146 chr3L 3922794 intron Eip63F-1 - chr3L 3922867 intron Eip63F-1 - chr3L 3922940 intron Eip63F-1 - chr3L_9_3920001 chr3L_3920001 RAL-703 902 chr3L 4038025 4038066 chr3L 4038126 4038168 5 101 2.5 4.5 3.5 1.1 143 chr3L 4038025 3` UTR CG11593 - chr3L 4038096 3` UTR CG11593 - chr3L 4038168 3` UTR CG11593 - chr3L_5_4035001 chr3L_4035001 RAL-703 903 chr3L 4048397 4048425 chr3L 4048508 4048537 4 112 8.0 2.5 5.2 0.6 140 chr3L 4048397 intron CG1136 + chr3L 4048467 intron CG1136 + chr3L 4048537 intron CG1136 + chr3L_4_4045001 chr3L_4045001 RAL-703 904 chr3L 4146810 4146837 chr3L 4146896 4146939 8 97 0.0 3.0 1.5 3.2 129 chr3L 4146810 intergenic not near genes chr3L 4146874 intergenic not near genes chr3L 4146939 intergenic not near genes chr3L_8_4145001 chr3L_4145001 RAL-703 905 chr3L 4170070 4170108 chr3L 4170259 4170297 4 189 0.5 2.5 1.5 1.6 227 chr3L 4170070 intergenic Ero1L + chr3L 4170184 intergenic Ero1L + chr3L 4170297 intergenic Ero1L + chr3L_4_4170001 chr3L_4170001 RAL-703 906 chr3L 4536346 4536388 chr3L 4536466 4536508 8 117 1.0 3.5 2.2 2.5 162 chr3L 4536346 exon CG11353 + chr3L 4536427 intron CG11353 + chr3L 4536508 intron CG11353 + chr3L_8_4535001 chr3L_4535001 RAL-703 907 chr3L 4607262 4607287 chr3L 4607359 4607398 8 107 4.5 1.5 3.0 2.0 136 chr3L 4607262 intron Src64B - chr3L 4607330 intron Src64B - chr3L 4607398 intron Src64B - chr3L_8_4605001 chr3L_4605001 RAL-703 908 chr3L 4624742 4624773 chr3L 4624826 4624872 6 94 1.5 0.5 1.0 3.0 130 chr3L 4624742 intron Src64B - chr3L 4624807 intron Src64B - chr3L 4624872 intron Src64B - chr3L_6_4620001 chr3L_4620001 RAL-703 909 chr3L 4657966 4657994 chr3L 4658434 4658476 6 478 0.5 1.5 1.0 3.0 510 chr3L 4657966 intron axo - chr3L 4658221 intron axo - chr3L 4658476 intron axo - chr3L_6_4655001 chr3L_4655001 RAL-703 910 chr3L 4837891 4837920 chr3L 4837990 4837990 9 91 1.5 5.5 3.5 2.0 99 chr3L 4837891 3` UTR CG13707 - chr3L 4837940 3` UTR CG13707 - chr3L 4837990 3` UTR CG13707 - chr3L_9_4835001 chr3L_4835001 RAL-703 911 chr3L 4839541 4839578 chr3L 4839638 4839660 9 90 1.5 5.5 3.5 2.0 119 chr3L 4839541 intron CG13707 - chr3L 4839600 intron CG13707 - chr3L 4839660 intron CG13707 - chr3L_9_4835001 chr3L_4835001 RAL-703 912 chr3L 4858308 4858329 chr3L 4858402 4858405 6 96 3.5 2.5 3.0 1.5 97 chr3L 4858308 intergenic not near genes chr3L 4858356 intergenic not near genes chr3L 4858405 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-703 913 chr3L 4901117 4901149 chr3L 4907319 4907359 diver 7 6208 2.5 2.0 2.2 2.2 6242 chr3L 4901117 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907359 intergenic not near genes chr3L_7_4900001 chr3L_4900001 RAL-703 914 chr3L 5034148 5034169 chr3L 5043319 5043326 roo 7 9167 4.5 3.0 3.8 1.5 9178 chr3L 5034148 intron Con - chr3L 5038737 intron Con - chr3L 5043326 intron Con - chr3L_7_5035001 chr3L_5035001 RAL-703 915 chr3L 5045464 5045486 chr3L 5050245 5050287 Doc 7 4795 2.5 5.0 3.8 1.5 4823 chr3L 5045464 intron Con - chr3L 5047876 intron Con - chr3L 5050287 intron Con - chr3L_7_5045001 chr3L_5045001 RAL-703 916 chr3L 5056450 5056462 chr3L 5056550 5056566 4 103 10.0 2.5 6.2 0.6 116 chr3L 5056450 intron Con - chr3L 5056508 intron Con - chr3L 5056566 intron Con - chr3L_4_5055001 chr3L_5055001 RAL-703 917 chr3L 5056464 5056478 chr3L 5056547 5056578 5 95 2.0 2.5 2.2 1.6 114 chr3L 5056464 intron Con - chr3L 5056521 intron Con - chr3L 5056578 intron Con - chr3L_5_5055001 chr3L_5055001 RAL-703 918 chr3L 5103612 5103614 chr3L 5103701 5103710 4 96 3.0 0.0 1.5 1.6 98 chr3L 5103612 intergenic not near genes chr3L 5103661 intergenic not near genes chr3L 5103710 intergenic not near genes chr3L_4_5100001 chr3L_5100001 RAL-703 919 chr3L 5104470 5104512 chr3L 5124624 5124656 8 20150 1.5 0.0 0.8 4.4 20186 chr3L 5104470 intergenic not near genes chr3L 5114563 intergenic not near genes chr3L 5124656 intergenic not near genes chr3L_8_5110001 chr3L_5110001 RAL-703 920 chr3L 5310368 5310390 chr3L 5310498 5310512 5 134 2.5 6.0 4.2 1.0 144 chr3L 5310368 intergenic not near genes chr3L 5310440 intergenic not near genes chr3L 5310512 intergenic not near genes chr3L_5_5310001 chr3L_5310001 RAL-703 921 chr3L 5316942 5316968 chr3L 5317039 5317072 6 97 3.5 4.0 3.8 1.2 130 chr3L 5316942 intergenic CR45741 - chr3L 5317007 intergenic not near genes chr3L 5317072 intergenic not near genes chr3L_6_5315001 chr3L_5315001 RAL-703 922 chr3L 5339810 5339838 chr3L 5340069 5340102 6 262 5.0 3.5 4.2 1.2 292 chr3L 5339810 intergenic not near genes chr3L 5339956 intergenic not near genes chr3L 5340102 intergenic not near genes chr3L_6_5335001 chr3L_5335001 RAL-703 923 chr3L 5444995 5445029 chr3L 5445319 5445333 5 333 2.0 3.5 2.8 1.3 338 chr3L 5444995 intergenic not near genes chr3L 5445164 intergenic not near genes chr3L 5445333 intergenic not near genes chr3L_5_5445001 chr3L_5445001 RAL-703 924 chr3L 5449518 5449560 chr3L 5449617 5449659 6 99 2.0 2.0 2.0 2.0 141 chr3L 5449518 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449659 intergenic not near genes chr3L_6_5445001 chr3L_5445001 RAL-703 925 chr3L 5498380 5498421 chr3L 5498485 5498518 4 91 0.0 4.0 2.0 1.3 138 chr3L 5498380 exon blanks - chr3L 5498449 exon blanks - chr3L 5498518 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-703 926 chr3L 5526980 5527205 chr3L 5527055 5527330 8 117 1.5 0.0 0.8 4.4 350 chr3L 5526980 intron Lkr - chr3L 5527155 intron Lkr - chr3L 5527330 intron Lkr - chr3L_8_5525001 chr3L_5525001 RAL-703 927 chr3L 5537701 5537745 chr3L 5538063 5538105 jockey 4 361 4.0 4.5 4.2 0.8 404 chr3L 5537701 intergenic not near genes chr3L 5537903 intergenic not near genes chr3L 5538105 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-703 928 chr3L 5549436 5549463 chr3L 5549532 5549557 5 95 0.5 6.0 3.2 1.2 121 chr3L 5549436 intron CG10625 - chr3L 5549496 intron CG10625 - chr3L 5549557 intron CG10625 - chr3L_5_5545001 chr3L_5545001 RAL-703 929 chr3L 5562068 5562103 chr3L 5562340 5562388 12 272 1.5 4.5 3.0 3.0 320 chr3L 5562068 exon Sucb - chr3L 5562228 exon Sucb - chr3L 5562388 exon Sucb - chr3L_12_5560001 chr3L_5560001 RAL-703 930 chr3L 5677175 5677204 chr3L 5677271 5677300 6 94 0.0 2.5 1.2 2.7 125 chr3L 5677175 intron sif + chr3L 5677238 intron sif + chr3L 5677300 intron sif + chr3L_6_5675001 chr3L_5675001 RAL-703 931 chr3L 5683248 5683285 chr3L 5683346 5683392 7 99 1.0 2.5 1.8 2.5 144 chr3L 5683248 intron sif + chr3L 5683320 intron sif + chr3L 5683392 intron sif + chr3L_7_5680001 chr3L_5680001 RAL-703 932 chr3L 5910019 5910062 chr3L 5910274 5910322 pogo 13 259 1.0 1.0 1.0 6.5 303 chr3L 5910019 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910322 intron CG13288 + chr3L_13_5910001 chr3L_5910001 RAL-703 933 chr3L 6040346 6040394 chr3L 6042722 6042756 Doc 9 2374 4.5 4.5 4.5 1.6 2410 chr3L 6040346 intergenic Jon65Aiv + chr3L 6041551 intergenic not near genes chr3L 6042756 intergenic not near genes chr3L_9_6040001 chr3L_6040001 RAL-703 934 chr3L 6052640 6052663 chr3L 6052741 6052768 8 96 5.0 9.5 7.2 1.0 128 chr3L 6052640 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052768 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-703 935 chr3L 6116677 6116719 chr3L 6116780 6116823 7 101 5.0 2.0 3.5 1.6 146 chr3L 6116677 intron Ets65A + chr3L 6116750 intron Ets65A + chr3L 6116823 intron Ets65A + chr3L_7_6115001 chr3L_6115001 RAL-703 936 chr3L 6219411 6219440 chr3L 6219511 6219535 4 99 3.5 2.5 3.0 1.0 124 chr3L 6219411 intergenic not near genes chr3L 6219473 intergenic not near genes chr3L 6219535 intergenic not near genes chr3L_4_6215001 chr3L_6215001 RAL-703 937 chr3L 6220913 6220944 chr3L 6230070 6230116 roo 14 9169 4.5 2.5 3.5 3.1 9203 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225514 intergenic not near genes chr3L 6230116 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-703 938 chr3L 6280172 6280199 chr3L 6280266 6280287 8 92 1.5 0.5 1.0 4.0 115 chr3L 6280172 intergenic not near genes chr3L 6280230 intergenic not near genes chr3L 6280287 intergenic not near genes chr3L_8_6280001 chr3L_6280001 RAL-703 939 chr3L 6353370 6353400 chr3L 6353457 6353493 5 90 5.5 3.5 4.5 0.9 123 chr3L 6353370 intergenic not near genes chr3L 6353432 intergenic not near genes chr3L 6353493 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-703 940 chr3L 6405645 6405691 chr3L 6432129 6432175 roo 8 26482 2.5 3.5 3.0 2.0 26530 chr3L 6405645 intron CG42747 + chr3L 6418910 intron CG42747 + chr3L 6432175 intron CG42747 + chr3L_8_6415001 chr3L_6415001 RAL-703 941 chr3L 6582748 6582798 chr3L 6582867 6582916 12 116 2.0 2.0 2.0 4.0 168 chr3L 6582748 intron,intron CG18769 +,jv - chr3L 6582832 intron,intron CG18769 +,jv - chr3L 6582916 intron,intron CG18769 +,jv - chr3L_12_6580001 chr3L_6580001 RAL-703 942 chr3L 6642870 6643159 chr3L 6642970 6643235 6 101 3.0 0.0 1.5 2.4 365 chr3L 6642870 intergenic CR45239 + chr3L 6643052 intergenic CR45239 + chr3L 6643235 intergenic CR45239 + chr3L_6_6640001 chr3L_6640001 RAL-703 943 chr3L 6654201 6654250 chr3L 6654465 6654515 11 259 3.0 2.5 2.8 2.9 314 chr3L 6654201 intergenic not near genes chr3L 6654358 intergenic not near genes chr3L 6654515 intergenic not near genes chr3L_11_6650001 chr3L_6650001 RAL-703 944 chr3L 6668949 6668993 chr3L 6669050 6669093 15 101 3.0 0.0 1.5 6.0 144 chr3L 6668949 intergenic not near genes chr3L 6669021 intergenic not near genes chr3L 6669093 intergenic not near genes chr3L_15_6665001 chr3L_6665001 RAL-703 945 chr3L 6781111 6781146 chr3L 6783144 6783176 Doc 6 2032 1.5 3.0 2.2 1.9 2065 chr3L 6781111 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783176 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-703 946 chr3L 6816366 6816375 chr3L 6816485 6816493 6 116 1.0 3.5 2.2 1.9 127 chr3L 6816366 intergenic not near genes chr3L 6816430 intergenic not near genes chr3L 6816493 intergenic not near genes chr3L_6_6815001 chr3L_6815001 RAL-703 947 chr3L 6855926 6855947 chr3L 6860724 6860751 Doc 6 4800 2.5 2.5 2.5 1.7 4825 chr3L 6855926 intergenic not near genes chr3L 6858338 intergenic not near genes chr3L 6860751 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-703 948 chr3L 6887501 6887542 chr3L 6895013 6895054 roo 10 7508 3.5 1.5 2.5 2.9 7553 chr3L 6887501 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895054 intergenic not near genes chr3L_10_6890001 chr3L_6890001 RAL-703 949 chr3L 6934329 6934346 chr3L 6934460 6934477 4 131 3.0 2.0 2.5 1.1 148 chr3L 6934329 exon CG14820 + chr3L 6934403 intron CG14820 + chr3L 6934477 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-703 950 chr3L 6958975 6959005 chr3L 6963546 6963566 4 4562 21.5 23.5 22.5 0.2 4591 chr3L 6958975 exon Surf1 + chr3L 6961270 exon sgl - chr3L 6963566 intron sgl - chr3L_4_6960001 chr3L_6960001 RAL-703 951 chr3L 6974513 6974521 chr3L 6974613 6974622 4 107 0.0 5.5 2.8 1.1 109 chr3L 6974513 intron Galphai - chr3L 6974568 intron Galphai - chr3L 6974622 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-703 952 chr3L 6981929 6981936 chr3L 6982103 6982106 5 172 0.0 1.5 0.8 2.8 177 chr3L 6981929 intergenic not near genes chr3L 6982018 intergenic not near genes chr3L 6982106 intergenic not near genes chr3L_5_6980001 chr3L_6980001 RAL-703 953 chr3L 6994896 6994912 chr3L 6995525 6995542 BS 5 630 0.0 0.5 0.2 4.2 646 chr3L 6994896 intergenic bin + chr3L 6995219 intergenic not near genes chr3L 6995542 intergenic not near genes chr3L_5_6995001 chr3L_6995001 RAL-703 954 chr3L 7033166 7033187 chr3L 7033264 7033277 4 96 6.0 4.0 5.0 0.7 111 chr3L 7033166 intron Mp + chr3L 7033222 intron Mp + chr3L 7033277 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-703 955 chr3L 7033188 7033204 chr3L 7033253 7033290 8 93 3.0 3.5 3.2 1.9 102 chr3L 7033188 intron Mp + chr3L 7033239 intron Mp + chr3L 7033290 intron Mp + chr3L_8_7030001 chr3L_7030001 RAL-703 956 chr3L 7039697 7039730 chr3L 7039929 7039960 5 233 3.5 4.5 4.0 1.0 263 chr3L 7039697 intron Mp + chr3L 7039828 intron Mp + chr3L 7039960 intron Mp + chr3L_5_7035001 chr3L_7035001 RAL-703 957 chr3L 7150879 7150900 chr3L 7150974 7150995 4 96 3.5 4.5 4.0 0.8 116 chr3L 7150879 intron corn - chr3L 7150937 intron corn - chr3L 7150995 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-703 958 chr3L 7175042 7175050 chr3L 7175272 7175300 5 240 5.5 3.0 4.2 1.0 258 chr3L 7175042 intron Dscam2 - chr3L 7175171 intron Dscam2 - chr3L 7175300 intron Dscam2 - chr3L_5_7175001 chr3L_7175001 RAL-703 959 chr3L 7201721 7201745 chr3L 7201817 7201829 6 94 5.5 3.0 4.2 1.2 108 chr3L 7201721 intergenic not near genes chr3L 7201775 intergenic not near genes chr3L 7201829 intergenic not near genes chr3L_6_7200001 chr3L_7200001 RAL-703 960 chr3L 7264777 7264903 chr3L 7264880 7265006 10 109 0.0 0.0 0.0 10.0 229 chr3L 7264777 intergenic not near genes chr3L 7264892 intergenic not near genes chr3L 7265006 intergenic not near genes chr3L_10_7260001 chr3L_7260001 RAL-703 961 chr3L 7285451 7285472 chr3L 7285529 7285570 6 90 2.0 1.0 1.5 2.4 119 chr3L 7285451 intron unc-13-4A - chr3L 7285510 intron unc-13-4A - chr3L 7285570 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-703 962 chr3L 7350743 7350789 chr3L 7350871 7350915 7 123 4.0 3.0 3.5 1.6 172 chr3L 7350743 intron qm + chr3L 7350829 intron qm + chr3L 7350915 intron qm + chr3L_7_7350001 chr3L_7350001 RAL-703 963 chr3L 7574844 7574853 chr3L 7574941 7574945 4 96 0.0 1.0 0.5 2.7 101 chr3L 7574844 intergenic not near genes chr3L 7574894 intergenic not near genes chr3L 7574945 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-703 964 chr3L 7576206 7576238 chr3L 7576300 7576339 5 100 2.5 4.0 3.2 1.2 133 chr3L 7576206 intergenic not near genes chr3L 7576272 intergenic not near genes chr3L 7576339 intergenic not near genes chr3L_5_7575001 chr3L_7575001 RAL-703 965 chr3L 7869644 7869661 chr3L 7869744 7869750 4 96 6.5 2.5 4.5 0.7 106 chr3L 7869644 exon CG32365 + chr3L 7869697 exon CG32365 + chr3L 7869750 exon CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-703 966 chr3L 7876089 7876125 chr3L 7876188 7876224 4 99 0.0 0.0 0.0 4.0 135 chr3L 7876089 intron CG32365 + chr3L 7876156 intron CG32365 + chr3L 7876224 intron CG32365 + chr3L_4_7875001 chr3L_7875001 RAL-703 967 chr3L 7916821 7916861 chr3L 7926012 7926043 roo 4 9187 1.0 2.5 1.8 1.4 9222 chr3L 7916821 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926043 3` UTR syd - chr3L_4_7920001 chr3L_7920001 RAL-703 968 chr3L 7985363 7985391 chr3L 7987691 7987739 NOF 9 2345 5.5 2.5 4.0 1.8 2376 chr3L 7985363 intron nmo + chr3L 7986551 intron nmo + chr3L 7987739 intron nmo + chr3L_9_7985001 chr3L_7985001 RAL-703 969 chr3L 8026593 8026619 chr3L 8026691 8026700 4 94 1.5 2.0 1.8 1.4 107 chr3L 8026593 intron nmo + chr3L 8026646 intron nmo + chr3L 8026700 intron nmo + chr3L_4_8025001 chr3L_8025001 RAL-703 970 chr3L 8165946 8165989 chr3L 8166049 8166093 6 101 1.5 1.5 1.5 2.4 147 chr3L 8165946 intergenic CG13675 - chr3L 8166020 intergenic not near genes chr3L 8166093 intergenic not near genes chr3L_6_8165001 chr3L_8165001 RAL-703 971 chr3L 8208112 8208150 chr3L 8208263 8208298 10 150 3.0 1.5 2.2 3.1 186 chr3L 8208112 intergenic not near genes chr3L 8208205 intergenic not near genes chr3L 8208298 intergenic not near genes chr3L_10_8205001 chr3L_8205001 RAL-703 972 chr3L 8216836 8216889 chr3L 8216932 8216985 9 95 1.0 1.5 1.2 4.1 149 chr3L 8216836 intergenic not near genes chr3L 8216910 intergenic not near genes chr3L 8216985 intergenic not near genes chr3L_9_8215001 chr3L_8215001 RAL-703 973 chr3L 8295770 8295820 chr3L 8295948 8295998 9 174 2.5 3.5 3.0 2.2 228 chr3L 8295770 intergenic CG7201 - chr3L 8295884 intergenic not near genes chr3L 8295998 intergenic not near genes chr3L_9_8295001 chr3L_8295001 RAL-703 974 chr3L 8456459 8456483 chr3L 8456573 8456598 7 111 1.5 3.0 2.2 2.2 139 chr3L 8456459 intron Gug + chr3L 8456528 intron Gug + chr3L 8456598 intron Gug + chr3L_7_8455001 chr3L_8455001 RAL-703 975 chr3L 8498301 8498318 chr3L 8505788 8505805 blood 5 7487 1.0 6.5 3.8 1.0 7504 chr3L 8498301 intron CG43163 - chr3L 8502053 intron CG43163 - chr3L 8505805 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-703 976 chr3L 8619490 8619535 chr3L 8619599 8619630 5 106 5.0 2.0 3.5 1.1 140 chr3L 8619490 intergenic S-Lap1 +,S-Lap2 + chr3L 8619560 intergenic S-Lap1 +,S-Lap2 + chr3L 8619630 intergenic S-Lap1 +,S-Lap2 + chr3L_5_8615001 chr3L_8615001 RAL-703 977 chr3L 8691839 8691884 chr3L 8691942 8691981 9 90 2.5 5.0 3.8 1.9 142 chr3L 8691839 intergenic not near genes chr3L 8691910 intergenic not near genes chr3L 8691981 intergenic not near genes chr3L_9_8690001 chr3L_8690001 RAL-703 978 chr3L 8782106 8782149 chr3L 8782252 8782290 6 144 3.0 4.0 3.5 1.3 184 chr3L 8782106 intron Fhos + chr3L 8782198 intron Fhos + chr3L 8782290 intron Fhos + chr3L_6_8780001 chr3L_8780001 RAL-703 979 chr3L 8791257 8791308 chr3L 8796697 8796747 I-element 4 5440 5.5 0.0 2.8 1.1 5490 chr3L 8791257 exon Fhos + chr3L 8794002 intron Fhos + chr3L 8796747 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-703 980 chr3L 9024511 9024536 chr3L 9024600 9024636 6 95 1.0 1.0 1.0 3.0 125 chr3L 9024511 intergenic not near genes chr3L 9024574 intergenic not near genes chr3L 9024636 intergenic not near genes chr3L_6_9020001 chr3L_9020001 RAL-703 981 chr3L 9076916 9076957 chr3L 9084489 9084512 412 11 7573 3.5 4.5 4.0 2.2 7596 chr3L 9076916 exon Tequila + chr3L 9080714 intron Tequila + chr3L 9084512 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-703 982 chr3L 9109737 9109773 chr3L 9110362 9110393 10 622 2.0 3.0 2.5 2.9 656 chr3L 9109737 intron bol - chr3L 9110065 intron bol - chr3L 9110393 intron bol - chr3L_10_9110001 chr3L_9110001 RAL-703 983 chr3L 9128193 9128216 chr3L 9128296 9128320 9 104 5.5 5.5 5.5 1.4 127 chr3L 9128193 intron bol - chr3L 9128256 intron bol - chr3L 9128320 intron bol - chr3L_9_9125001 chr3L_9125001 RAL-703 984 chr3L 9130544 9130569 chr3L 9134322 9134327 412 4 3771 6.0 4.5 5.2 0.6 3783 chr3L 9130544 intergenic bol - chr3L 9132436 intergenic not near genes chr3L 9134327 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-703 985 chr3L 9164683 9164700 chr3L 9166170 9166187 hobo 8 1485 3.0 1.5 2.2 2.5 1504 chr3L 9164683 intron Rdl - chr3L 9165435 intron Rdl - chr3L 9166187 intron Rdl - chr3L_8_9165001 chr3L_9165001 RAL-703 986 chr3L 9219228 9219269 chr3L 9219917 9219944 jockey 9 675 3.5 6.0 4.8 1.6 716 chr3L 9219228 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219944 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-703 987 chr3L 9270597 9270644 chr3L 9278371 9278419 roo 6 7774 2.0 2.0 2.0 2.0 7822 chr3L 9270597 intron GluRIB + chr3L 9274508 intron GluRIB + chr3L 9278419 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-703 988 chr3L 9279881 9279924 chr3L 9279983 9279993 5 93 2.0 3.0 2.5 1.4 112 chr3L 9279881 intron GluRIB + chr3L 9279937 intron GluRIB + chr3L 9279993 intron GluRIB + chr3L_5_9275001 chr3L_9275001 RAL-703 989 chr3L 9313025 9313026 chr3L 11777678 11777678 4 2464652 12.0 7.0 9.5 0.4 2464653 chr3L 9313025 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-703 990 chr3L 9493593 9493640 chr3L 9493691 9493737 9 93 4.5 2.5 3.5 2.0 144 chr3L 9493593 intergenic not near genes chr3L 9493665 intergenic not near genes chr3L 9493737 intergenic not near genes chr3L_9_9490001 chr3L_9490001 RAL-703 991 chr3L 9502609 9502639 chr3L 9502709 9502739 4 98 2.0 3.0 2.5 1.1 130 chr3L 9502609 intron path - chr3L 9502674 intron path - chr3L 9502739 intron path - chr3L_4_9500001 chr3L_9500001 RAL-703 992 chr3L 9510905 9510957 chr3L 9511018 9511050 7 103 0.0 5.5 2.8 1.8 145 chr3L 9510905 intron RpS9 - chr3L 9510978 intron RpS9 - chr3L 9511050 intron RpS9 - chr3L_7_9510001 chr3L_9510001 RAL-703 993 chr3L 9571889 9571924 chr3L 9572249 9572282 jockey 4 362 3.5 1.5 2.5 1.1 393 chr3L 9571889 intron CG42673 + chr3L 9572086 intron CG42673 + chr3L 9572282 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-703 994 chr3L 9637836 9637884 chr3L 9637938 9637986 9 101 3.5 1.5 2.5 2.6 150 chr3L 9637836 intron fry - chr3L 9637911 intron fry - chr3L 9637986 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-703 995 chr3L 9824135 9824155 chr3L 9824234 9824253 4 98 4.5 0.0 2.2 1.2 118 chr3L 9824135 intron CG43897 + chr3L 9824194 intron CG43897 + chr3L 9824253 intron CG43897 + chr3L_4_9820001 chr3L_9820001 RAL-703 996 chr3L 9918862 9918904 chr3L 9918977 9919019 10 111 4.5 2.0 3.2 2.4 157 chr3L 9918862 intron CG34356 + chr3L 9918940 intron CG34356 + chr3L 9919019 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-703 997 chr3L 9929670 9929701 chr3L 9938463 9938500 roo 7 8799 2.0 2.5 2.2 2.2 8830 chr3L 9929670 intron CG34356 + chr3L 9934085 intron CG34356 + chr3L 9938500 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-703 998 chr3L 9987090 9987143 chr3L 9987188 9987241 5 98 2.5 1.0 1.8 1.8 151 chr3L 9987090 intron dpr6 + chr3L 9987166 intron dpr6 + chr3L 9987241 intron dpr6 + chr3L_5_9985001 chr3L_9985001 RAL-703 999 chr3L 10003138 10003178 chr3L 10003251 10003293 6 114 1.0 2.0 1.5 2.4 155 chr3L 10003138 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003293 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-703 1000 chr3L 10049551 10049570 chr3L 10049639 10049653 6 95 0.5 3.5 2.0 2.0 102 chr3L 10049551 intron dpr6 + chr3L 10049602 intron dpr6 + chr3L 10049653 intron dpr6 + chr3L_6_10045001 chr3L_10045001 RAL-703 1001 chr3L 10082562 10082581 chr3L 10082647 10082683 4 98 2.5 1.5 2.0 1.3 121 chr3L 10082562 intron dpr6 + chr3L 10082622 intron dpr6 + chr3L 10082683 intron dpr6 + chr3L_4_10080001 chr3L_10080001 RAL-703 1002 chr3L 10161428 10161451 chr3L 10161524 10161531 5 89 0.0 4.0 2.0 1.7 103 chr3L 10161428 intron dpr10 - chr3L 10161480 intron dpr10 - chr3L 10161531 intron dpr10 - chr3L_5_10160001 chr3L_10160001 RAL-703 1003 chr3L 10222763 10222776 chr3L 10222863 10222876 4 100 0.5 8.5 4.5 0.7 113 chr3L 10222763 intron scramb1 - chr3L 10222820 intron scramb1 - chr3L 10222876 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-703 1004 chr3L 10308726 10308750 chr3L 10308820 10308847 9 96 2.0 1.5 1.8 3.2 121 chr3L 10308726 intergenic not near genes chr3L 10308786 intergenic not near genes chr3L 10308847 intergenic not near genes chr3L_9_10305001 chr3L_10305001 RAL-703 1005 chr3L 10417553 10417606 chr3L 10417649 10417682 9 88 2.0 2.5 2.2 2.8 129 chr3L 10417553 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-703 1006 chr3L 10423050 10423077 chr3L 10423190 10423222 5 142 5.0 3.5 4.2 1.0 172 chr3L 10423050 intergenic not near genes chr3L 10423136 intergenic not near genes chr3L 10423222 intergenic not near genes chr3L_5_10420001 chr3L_10420001 RAL-703 1007 chr3L 10466026 10466068 chr3L 10466125 10466144 7 95 2.0 3.0 2.5 2.0 118 chr3L 10466026 intron S-Lap3 + chr3L 10466085 intron S-Lap3 + chr3L 10466144 intron S-Lap3 + chr3L_7_10465001 chr3L_10465001 RAL-703 1008 chr3L 10505621 10505672 chr3L 10505717 10505768 6 93 1.0 4.0 2.5 1.7 147 chr3L 10505621 intron A2bp1 + chr3L 10505694 intron A2bp1 + chr3L 10505768 intron A2bp1 + chr3L_6_10505001 chr3L_10505001 RAL-703 1009 chr3L 10583376 10583400 chr3L 10583520 10583544 5 144 4.0 1.5 2.8 1.3 168 chr3L 10583376 intron A2bp1 + chr3L 10583460 intron A2bp1 + chr3L 10583544 intron A2bp1 + chr3L_5_10580001 chr3L_10580001 RAL-703 1010 chr3L 10621849 10621868 chr3L 10621936 10621975 6 100 2.5 3.0 2.8 1.6 126 chr3L 10621849 intergenic not near genes chr3L 10621912 intergenic not near genes chr3L 10621975 intergenic not near genes chr3L_6_10620001 chr3L_10620001 RAL-703 1011 chr3L 10658067 10658209 chr3L 10658163 10658356 12 121 0.0 0.5 0.2 10.0 289 chr3L 10658067 intron CG32066 - chr3L 10658212 intron CG32066 - chr3L 10658356 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-703 1012 chr3L 10696356 10696404 chr3L 10696460 10696507 6 97 2.5 1.0 1.8 2.1 151 chr3L 10696356 intron NijA - chr3L 10696432 intron NijA - chr3L 10696507 intron NijA - chr3L_6_10695001 chr3L_10695001 RAL-703 1013 chr3L 10795043 10795073 chr3L 10795143 10795167 4 98 1.0 0.0 0.5 2.7 124 chr3L 10795043 5` UTR CR44546 + chr3L 10795105 5` UTR CR44546 + chr3L 10795167 5` UTR CR44546 + chr3L_4_10795001 chr3L_10795001 RAL-703 1014 chr3L 11029418 11029443 chr3L 11029549 11029573 7 130 2.5 4.0 3.2 1.7 155 chr3L 11029418 3` UTR CG32081 + chr3L 11029496 intergenic CG32081 + chr3L 11029573 intergenic CG32081 + chr3L_7_11025001 chr3L_11025001 RAL-703 1015 chr3L 11083447 11083472 chr3L 11083566 11083594 6 121 2.5 1.5 2.0 2.0 147 chr3L 11083447 exon JIL-1 - chr3L 11083520 intron JIL-1 - chr3L 11083594 intron JIL-1 - chr3L_6_11080001 chr3L_11080001 RAL-703 1016 chr3L 11087021 11087088 chr3L 11088846 11088885 S-element 12 1807 0.5 1.5 1.0 6.0 1864 chr3L 11087021 intron JIL-1 - chr3L 11087953 intron JIL-1 - chr3L 11088885 intron JIL-1 - chr3L_12_11085001 chr3L_11085001 RAL-703 1017 chr3L 11127193 11127216 chr3L 11127290 11127313 9 97 2.5 1.5 2.0 3.0 120 chr3L 11127193 intron CG42575 + chr3L 11127253 intron CG42575 + chr3L 11127313 intron CG42575 + chr3L_9_11125001 chr3L_11125001 RAL-703 1018 chr3L 11135511 11135794 chr3L 11135761 11135896 8 139 0.0 0.0 0.0 8.0 385 chr3L 11135511 intergenic CG14143 + chr3L 11135704 intergenic CG14143 +,CG32082 + chr3L 11135896 intergenic CG32082 +,CG14143 + chr3L_8_11135001 chr3L_11135001 RAL-703 1019 chr3L 11218479 11218514 chr3L 11218658 11218693 8 178 4.5 3.0 3.8 1.7 214 chr3L 11218479 intron CG42671 + chr3L 11218586 intron CG42671 + chr3L 11218693 intron CG42671 + chr3L_8_11215001 chr3L_11215001 RAL-703 1020 chr3L 11249856 11249886 chr3L 11249942 11249980 6 88 2.0 0.5 1.2 2.7 124 chr3L 11249856 5` UTR CR44717 + chr3L 11249918 5` UTR CR44717 + chr3L 11249980 5` UTR CR44717 + chr3L_6_11245001 chr3L_11245001 RAL-703 1021 chr3L 11264466 11264482 chr3L 11271440 11271454 17.6 4 6972 5.0 5.0 5.0 0.7 6988 chr3L 11264466 intergenic not near genes chr3L 11267960 intergenic not near genes chr3L 11271454 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-703 1022 chr3L 11300556 11300586 chr3L 11300636 11300687 8 96 5.0 3.0 4.0 1.6 131 chr3L 11300556 intergenic not near genes chr3L 11300622 intergenic not near genes chr3L 11300687 intergenic not near genes chr3L_8_11300001 chr3L_11300001 RAL-703 1023 chr3L 11329675 11329728 chr3L 11332893 11332936 jockey 12 3217 3.0 4.5 3.8 2.5 3261 chr3L 11329675 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332936 intergenic not near genes chr3L_12_11330001 chr3L_11330001 RAL-703 1024 chr3L 11344165 11344179 chr3L 11344253 11344286 5 104 2.5 0.0 1.2 2.3 121 chr3L 11344165 intergenic not near genes chr3L 11344226 intergenic not near genes chr3L 11344286 intergenic not near genes chr3L_5_11340001 chr3L_11340001 RAL-703 1025 chr3L 11383960 11383987 chr3L 11384042 11384058 6 82 3.0 3.5 3.2 1.4 98 chr3L 11383960 intron CR42755 - chr3L 11384009 3` UTR CR42755 - chr3L 11384058 3` UTR CR42755 - chr3L_6_11380001 chr3L_11380001 RAL-703 1026 chr3L 11404801 11404854 chr3L 11404935 11404988 9 132 4.0 2.0 3.0 2.2 187 chr3L 11404801 intergenic not near genes chr3L 11404894 intergenic not near genes chr3L 11404988 intergenic not near genes chr3L_9_11400001 chr3L_11400001 RAL-703 1027 chr3L 11449225 11449238 chr3L 11449318 11449351 8 114 2.0 3.5 2.8 2.1 126 chr3L 11449225 intergenic not near genes chr3L 11449288 intergenic not near genes chr3L 11449351 intergenic not near genes chr3L_8_11445001 chr3L_11445001 RAL-703 1028 chr3L 11564792 11564813 chr3L 11572406 11572420 412 7 7611 3.0 4.5 3.8 1.5 7628 chr3L 11564792 exon CG33267 + chr3L 11568606 intron CG33267 + chr3L 11572420 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-703 1029 chr3L 11579544 11579580 chr3L 11579669 11579706 9 125 2.0 1.5 1.8 3.2 162 chr3L 11579544 intergenic CG43390 - chr3L 11579625 intergenic CG43390 - chr3L 11579706 intergenic CG43390 - chr3L_9_11575001 chr3L_11575001 RAL-703 1030 chr3L 11587915 11587951 chr3L 11588004 11588044 5 92 2.0 5.0 3.5 1.1 129 chr3L 11587915 intergenic rt - chr3L 11587980 intergenic rt - chr3L 11588044 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-703 1031 chr3L 11588718 11588723 chr3L 11588894 11588898 4 175 2.5 2.0 2.2 1.2 180 chr3L 11588718 intergenic not near genes chr3L 11588808 intergenic not near genes chr3L 11588898 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-703 1032 chr3L 11588725 11588740 chr3L 11588890 11588916 4 167 2.5 2.0 2.2 1.2 191 chr3L 11588725 intergenic not near genes chr3L 11588820 intergenic not near genes chr3L 11588916 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-703 1033 chr3L 11588749 11588756 chr3L 11588889 11588931 5 168 2.5 2.0 2.2 1.6 182 chr3L 11588749 intergenic not near genes chr3L 11588840 intergenic not near genes chr3L 11588931 intergenic not near genes chr3L_5_11585001 chr3L_11585001 RAL-703 1034 chr3L 11701993 11702017 chr3L 11702088 11702116 5 94 5.0 3.0 4.0 1.0 123 chr3L 11701993 intron CG11658 - chr3L 11702054 intron CG11658 - chr3L 11702116 intron CG11658 - chr3L_5_11700001 chr3L_11700001 RAL-703 1035 chr3L 11723072 11723114 chr3L 11727884 11727929 Doc 5 4814 3.5 1.5 2.5 1.4 4857 chr3L 11723072 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727929 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-703 1036 chr3L 11757908 11757930 chr3L 11758025 11758047 9 117 4.0 0.0 2.0 3.0 139 chr3L 11757908 intron CG6024 - chr3L 11757978 intron CG6024 - chr3L 11758047 intron CG6024 - chr3L_9_11755001 chr3L_11755001 RAL-703 1037 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028207 10.5 7.0 8.8 1.0 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 RAL-703 1038 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 8.0 14.0 11.0 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-703 1039 chr3L 11849321 11849356 chr3L 11849436 11849475 6 116 1.5 3.0 2.2 1.9 154 chr3L 11849321 intergenic not near genes chr3L 11849398 intergenic not near genes chr3L 11849475 intergenic not near genes chr3L_6_11845001 chr3L_11845001 RAL-703 1040 chr3L 11864540 11864581 chr3L 11865852 11865868 pogo 10 1305 3.0 3.5 3.2 2.4 1328 chr3L 11864540 intron CG44837 - chr3L 11865204 intron CG44837 - chr3L 11865868 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-703 1041 chr3L 11901364 11901373 chr3L 11901463 11901489 5 112 0.0 2.5 1.2 2.3 125 chr3L 11901364 intron CG44837 - chr3L 11901426 intron CG44837 - chr3L 11901489 intron CG44837 - chr3L_5_11900001 chr3L_11900001 RAL-703 1042 chr3L 11915982 11915989 chr3L 11916083 11916091 4 101 2.5 4.0 3.2 1.0 109 chr3L 11915982 intron CG44837 - chr3L 11916036 intron CG44837 - chr3L 11916091 intron CG44837 - chr3L_4_11915001 chr3L_11915001 RAL-703 1043 chr3L 11943495 11943502 chr3L 11943616 11943623 4 120 2.5 4.0 3.2 1.0 128 chr3L 11943495 intergenic Rpt4R +,CG5883 - chr3L 11943559 intergenic Rpt4R +,CG5883 - chr3L 11943623 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-703 1044 chr3L 11956611 11956647 chr3L 11956701 11956749 6 98 0.0 3.0 1.5 2.4 138 chr3L 11956611 exon CG7248 + chr3L 11956680 exon CG7248 + chr3L 11956749 3` UTR,3` UTR CG7248 +,CG11570 - chr3L_6_11955001 chr3L_11955001 RAL-703 1045 chr3L 11984553 11984595 chr3L 11984656 11984714 7 98 2.0 0.0 1.0 3.5 161 chr3L 11984553 intergenic CG6938 + chr3L 11984634 intergenic CG6938 + chr3L 11984714 intergenic CG6938 + chr3L_7_11980001 chr3L_11980001 RAL-703 1046 chr3L 12019324 12019344 chr3L 12019450 12019476 6 126 1.5 6.5 4.0 1.2 152 chr3L 12019324 intron rols - chr3L 12019400 intron rols - chr3L 12019476 intron rols - chr3L_6_12015001 chr3L_12015001 RAL-703 1047 chr3L 12052685 12052733 chr3L 12052794 12052841 9 107 2.5 5.0 3.8 1.9 156 chr3L 12052685 intron rols - chr3L 12052763 intron rols - chr3L 12052841 intron rols - chr3L_9_12050001 chr3L_12050001 RAL-703 1048 chr3L 12075414 12075428 chr3L 12075523 12075534 4 108 4.5 0.0 2.2 1.2 120 chr3L 12075414 intron Sema-5c - chr3L 12075474 intron Sema-5c - chr3L 12075534 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-703 1049 chr3L 12089069 12089111 chr3L 12089169 12089211 10 97 1.5 3.0 2.2 3.1 142 chr3L 12089069 exon CG17154 + chr3L 12089140 3` UTR CG17154 + chr3L 12089211 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-703 1050 chr3L 12092379 12092421 chr3L 12092476 12092517 4 97 0.0 1.5 0.8 2.2 138 chr3L 12092379 intergenic not near genes chr3L 12092448 intergenic not near genes chr3L 12092517 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-703 1051 chr3L 12312492 12312509 chr3L 12312569 12312593 7 92 1.5 1.5 1.5 2.8 101 chr3L 12312492 intergenic not near genes chr3L 12312542 intergenic not near genes chr3L 12312593 intergenic not near genes chr3L_7_12310001 chr3L_12310001 RAL-703 1052 chr3L 12364260 12364271 chr3L 12366806 12366808 7 2548 3.0 0.5 1.8 2.5 2548 chr3L 12364260 intergenic not near genes chr3L 12365534 intergenic not near genes chr3L 12366808 intergenic not near genes chr3L_7_12365001 chr3L_12365001 RAL-703 1053 chr3L 12369515 12369564 chr3L 12369625 12369669 11 107 5.5 2.0 3.8 2.3 154 chr3L 12369515 intron Ncc69 - chr3L 12369592 intron Ncc69 - chr3L 12369669 intron Ncc69 - chr3L_11_12365001 chr3L_12365001 RAL-703 1054 chr3L 12555605 12555654 chr3L 12555719 12555735 11 107 1.5 3.0 2.2 3.4 130 chr3L 12555605 intron sowah - chr3L 12555670 intron sowah - chr3L 12555735 intron sowah - chr3L_11_12555001 chr3L_12555001 RAL-703 1055 chr3L 12578043 12578079 chr3L 12578151 12578186 4 108 0.0 0.0 0.0 4.0 143 chr3L 12578043 intergenic not near genes chr3L 12578114 intergenic not near genes chr3L 12578186 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-703 1056 chr3L 12610982 12611022 chr3L 12611248 12611288 8 266 0.0 2.5 1.2 3.6 306 chr3L 12610982 intron caup + chr3L 12611135 intron caup + chr3L 12611288 intron caup + chr3L_8_12610001 chr3L_12610001 RAL-703 1057 chr3L 12612558 12612612 chr3L 12612671 12612677 7 99 2.5 2.0 2.2 2.2 119 chr3L 12612558 intron caup + chr3L 12612618 intron caup + chr3L 12612677 intron caup + chr3L_7_12610001 chr3L_12610001 RAL-703 1058 chr3L 12626156 12626182 chr3L 12626285 12626291 9 126 3.5 0.0 1.8 3.2 135 chr3L 12626156 intergenic not near genes chr3L 12626224 intergenic not near genes chr3L 12626291 intergenic not near genes chr3L_9_12625001 chr3L_12625001 RAL-703 1059 chr3L 12647934 12647978 chr3L 12648027 12648049 6 84 2.5 1.5 2.0 2.0 115 chr3L 12647934 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648049 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-703 1060 chr3L 12705427 12705448 chr3L 12705528 12705542 7 95 0.5 9.5 5.0 1.2 115 chr3L 12705427 intron mirr + chr3L 12705484 intron mirr + chr3L 12705542 intron mirr + chr3L_7_12705001 chr3L_12705001 RAL-703 1061 chr3L 12706625 12706654 chr3L 12706772 12706801 9 145 2.5 3.0 2.8 2.4 176 chr3L 12706625 intron mirr + chr3L 12706713 intron mirr + chr3L 12706801 intron mirr + chr3L_9_12705001 chr3L_12705001 RAL-703 1062 chr3L 12720308 12720356 chr3L 12720412 12720429 6 99 2.5 5.0 3.8 1.2 121 chr3L 12720308 intergenic not near genes chr3L 12720368 intergenic not near genes chr3L 12720429 intergenic not near genes chr3L_6_12720001 chr3L_12720001 RAL-703 1063 chr3L 12801993 12802011 chr3L 12802071 12802105 4 90 3.0 5.5 4.2 0.8 112 chr3L 12801993 intron Atg1 - chr3L 12802049 intron Atg1 - chr3L 12802105 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-703 1064 chr3L 12874907 12874959 chr3L 12877219 12877271 jockey 10 2307 1.5 1.5 1.5 4.0 2364 chr3L 12874907 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877271 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-703 1065 chr3L 12894786 12894817 chr3L 12894884 12894897 4 93 4.5 4.0 4.2 0.8 111 chr3L 12894786 intergenic CG14118 + chr3L 12894842 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-703 1066 chr3L 12896218 12896254 chr3L 12896315 12896326 5 89 3.5 0.0 1.8 1.8 108 chr3L 12896218 intergenic not near genes chr3L 12896272 intergenic not near genes chr3L 12896326 intergenic not near genes chr3L_5_12895001 chr3L_12895001 RAL-703 1067 chr3L 12898893 12898910 chr3L 12898959 12899006 4 85 2.0 3.5 2.8 1.1 113 chr3L 12898893 intergenic not near genes chr3L 12898950 intergenic not near genes chr3L 12899006 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-703 1068 chr3L 12917522 12917542 chr3L 12917629 12917638 7 104 5.5 5.0 5.2 1.1 116 chr3L 12917522 intergenic not near genes chr3L 12917580 intergenic not near genes chr3L 12917638 intergenic not near genes chr3L_7_12915001 chr3L_12915001 RAL-703 1069 chr3L 12917546 12917552 chr3L 12917615 12917659 4 95 5.5 4.5 5.0 0.7 113 chr3L 12917546 intergenic not near genes chr3L 12917602 intergenic not near genes chr3L 12917659 intergenic not near genes chr3L_4_12915001 chr3L_12915001 RAL-703 1070 chr3L 12919270 12919297 chr3L 12924746 12924746 Rt1c 8 5476 6.0 3.0 4.5 1.5 5476 chr3L 12919270 intergenic not near genes chr3L 12922008 intergenic not near genes chr3L 12924746 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-703 1071 chr3L 12949265 12949317 chr3L 12949377 12949431 8 112 4.5 2.0 3.2 1.9 166 chr3L 12949265 intergenic not near genes chr3L 12949348 intergenic not near genes chr3L 12949431 intergenic not near genes chr3L_8_12945001 chr3L_12945001 RAL-703 1072 chr3L 12970977 12971021 chr3L 12971073 12971123 7 99 1.0 2.5 1.8 2.5 146 chr3L 12970977 intergenic CG10748 - chr3L 12971050 intergenic CG10748 - chr3L 12971123 intergenic CG10748 - chr3L_7_12970001 chr3L_12970001 RAL-703 1073 chr3L 12998562 12998594 chr3L 12998797 12998833 8 239 2.0 2.5 2.2 2.5 271 chr3L 12998562 intergenic not near genes chr3L 12998698 intergenic not near genes chr3L 12998833 intergenic not near genes chr3L_8_12995001 chr3L_12995001 RAL-703 1074 chr3L 13008786 13008826 chr3L 13008965 13009002 5 178 3.0 4.0 3.5 1.1 216 chr3L 13008786 exon CG14117 + chr3L 13008894 intron CG14117 + chr3L 13009002 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-703 1075 chr3L 13095799 13095834 chr3L 13095907 13095940 7 104 0.5 0.0 0.2 5.8 141 chr3L 13095799 intergenic not near genes chr3L 13095870 intergenic not near genes chr3L 13095940 intergenic not near genes chr3L_7_13095001 chr3L_13095001 RAL-703 1076 chr3L 13137652 13137673 chr3L 13137737 13137781 8 90 4.5 5.0 4.8 1.4 129 chr3L 13137652 intergenic not near genes chr3L 13137716 intergenic not near genes chr3L 13137781 intergenic not near genes chr3L_8_13135001 chr3L_13135001 RAL-703 1077 chr3L 13159276 13159297 chr3L 13159370 13159396 4 98 5.5 2.0 3.8 0.8 120 chr3L 13159276 intergenic not near genes chr3L 13159336 intergenic not near genes chr3L 13159396 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-703 1078 chr3L 13161782 13161796 chr3L 13161863 13161892 5 93 2.0 3.5 2.8 1.3 110 chr3L 13161782 intergenic not near genes chr3L 13161837 intergenic not near genes chr3L 13161892 intergenic not near genes chr3L_5_13160001 chr3L_13160001 RAL-703 1079 chr3L 13206219 13206263 chr3L 13206319 13206365 12 99 3.0 3.5 3.2 2.9 146 chr3L 13206219 intergenic not near genes chr3L 13206292 intergenic not near genes chr3L 13206365 intergenic not near genes chr3L_12_13205001 chr3L_13205001 RAL-703 1080 chr3L 13267265 13267311 chr3L 13267397 13267443 10 127 4.0 1.0 2.5 2.9 178 chr3L 13267265 intron caps + chr3L 13267354 intron caps + chr3L 13267443 intron caps + chr3L_10_13265001 chr3L_13265001 RAL-703 1081 chr3L 13296506 13296537 chr3L 13296617 13296648 5 106 5.0 2.0 3.5 1.1 142 chr3L 13296506 intergenic Sfp70A4 -,CR45253 + chr3L 13296577 3` UTR Sfp70A4 - chr3L 13296648 3` UTR Sfp70A4 - chr3L_5_13295001 chr3L_13295001 RAL-703 1082 chr3L 13311731 13311766 chr3L 13311888 13311920 12 157 1.0 6.0 3.5 2.7 189 chr3L 13311731 intergenic not near genes chr3L 13311826 intergenic not near genes chr3L 13311920 intergenic not near genes chr3L_12_13310001 chr3L_13310001 RAL-703 1083 chr3L 13407130 13407176 chr3L 13407230 13407276 6 97 2.5 0.5 1.5 2.4 146 chr3L 13407130 intergenic not near genes chr3L 13407203 intergenic not near genes chr3L 13407276 intergenic not near genes chr3L_6_13405001 chr3L_13405001 RAL-703 1084 chr3L 13477004 13477036 chr3L 13477101 13477130 5 96 0.0 1.5 0.8 2.8 126 chr3L 13477004 intergenic not near genes chr3L 13477067 intergenic stv + chr3L 13477130 intergenic stv + chr3L_5_13475001 chr3L_13475001 RAL-703 1085 chr3L 13595007 13595040 chr3L 13595104 13595138 6 94 1.5 3.5 2.5 1.7 131 chr3L 13595007 intron bru-3 - chr3L 13595072 intron bru-3 - chr3L 13595138 intron bru-3 - chr3L_6_13595001 chr3L_13595001 RAL-703 1086 chr3L 13629511 13629530 chr3L 13629642 13629658 4 129 4.0 7.5 5.8 0.6 147 chr3L 13629511 intron bru-3 - chr3L 13629584 intron bru-3 - chr3L 13629658 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-703 1087 chr3L 13648875 13648905 chr3L 13648985 13649015 8 110 5.0 3.5 4.2 1.5 140 chr3L 13648875 intron bru-3 - chr3L 13648945 intron bru-3 - chr3L 13649015 intron bru-3 - chr3L_8_13645001 chr3L_13645001 RAL-703 1088 chr3L 13677523 13677553 chr3L 13677607 13677650 7 89 2.5 1.5 2.0 2.3 127 chr3L 13677523 intron bru-3 - chr3L 13677586 intron bru-3 - chr3L 13677650 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-703 1089 chr3L 13774643 13774658 chr3L 13774749 13774764 4 106 3.5 6.0 4.8 0.7 121 chr3L 13774643 intron bru-3 - chr3L 13774704 intron bru-3 - chr3L 13774764 intron bru-3 - chr3L_4_13770001 chr3L_13770001 RAL-703 1090 chr3L 13833958 13834008 chr3L 13834090 13834122 7 124 1.0 1.0 1.0 3.5 164 chr3L 13833958 intergenic not near genes chr3L 13834040 intergenic not near genes chr3L 13834122 intergenic not near genes chr3L_7_13830001 chr3L_13830001 RAL-703 1091 chr3L 13845733 13845761 chr3L 13845815 13845855 6 93 2.0 3.0 2.5 1.7 122 chr3L 13845733 intergenic Hml +,Tsp68C + chr3L 13845794 intergenic Hml +,Tsp68C + chr3L 13845855 intergenic Hml + chr3L_6_13845001 chr3L_13845001 RAL-703 1092 chr3L 13884362 13884384 chr3L 13884473 13884495 11 109 1.5 1.5 1.5 4.4 133 chr3L 13884362 intron dysc - chr3L 13884428 intron dysc - chr3L 13884495 intron dysc - chr3L_11_13880001 chr3L_13880001 RAL-703 1093 chr3L 13922808 13922848 chr3L 13923039 13923066 11 226 2.0 5.0 3.5 2.4 258 chr3L 13922808 intron Rgl - chr3L 13922937 intron Rgl - chr3L 13923066 intron Rgl - chr3L_11_13920001 chr3L_13920001 RAL-703 1094 chr3L 14061649 14061689 chr3L 14061758 14061795 6 105 1.0 1.5 1.2 2.7 146 chr3L 14061649 intron CG32138 + chr3L 14061722 intron CG32138 + chr3L 14061795 intron CG32138 + chr3L_6_14060001 chr3L_14060001 RAL-703 1095 chr3L 14196413 14196435 chr3L 14196512 14196540 10 102 3.0 3.5 3.2 2.4 127 chr3L 14196413 intron nuf + chr3L 14196476 intron nuf + chr3L 14196540 intron nuf + chr3L_10_14195001 chr3L_14195001 RAL-703 1096 chr3L 14245571 14245594 chr3L 14245671 14245706 1360 5 106 4.0 3.0 3.5 1.1 135 chr3L 14245571 3` UTR CR44561 - chr3L 14245638 3` UTR CR44561 - chr3L 14245706 intergenic CR44561 -,CR44560 + chr3L_5_14245001 chr3L_14245001 RAL-703 1097 chr3L 14267358 14267400 chr3L 14271817 14271834 F-element 9 4449 3.0 1.5 2.2 2.8 4476 chr3L 14267358 intergenic not near genes chr3L 14269596 intergenic not near genes chr3L 14271834 intergenic not near genes chr3L_9_14265001 chr3L_14265001 RAL-703 1098 chr3L 14295982 14296011 chr3L 14296487 14296516 roo 6 504 3.0 4.5 3.8 1.2 534 chr3L 14295982 intron fz + chr3L 14296249 intron fz + chr3L 14296516 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-703 1099 chr3L 14312027 14312059 chr3L 14316838 14316878 X-element 7 4822 2.0 5.0 3.5 1.6 4851 chr3L 14312027 exon fz + chr3L 14314452 intron fz + chr3L 14316878 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-703 1100 chr3L 14356500 14356553 chr3L 14356598 14356616 7 89 2.5 2.0 2.2 2.2 116 chr3L 14356500 intron fz + chr3L 14356558 intron fz + chr3L 14356616 intron fz + chr3L_7_14355001 chr3L_14355001 RAL-703 1101 chr3L 14441570 14441621 chr3L 14441739 14441790 7 167 2.0 2.0 2.0 2.3 220 chr3L 14441570 intron bbg - chr3L 14441680 intron bbg - chr3L 14441790 intron bbg - chr3L_7_14440001 chr3L_14440001 RAL-703 1102 chr3L 14444714 14444728 chr3L 14444908 14444923 4 195 4.0 4.5 4.2 0.8 209 chr3L 14444714 intron bbg - chr3L 14444818 intron bbg - chr3L 14444923 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-703 1103 chr3L 14468446 14468473 chr3L 14473653 14473699 copia 7 5217 3.5 3.5 3.5 1.6 5253 chr3L 14468446 intron bbg - chr3L 14471072 intron bbg - chr3L 14473699 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-703 1104 chr3L 14522084 14522124 chr3L 14522202 14522243 7 116 1.5 3.0 2.2 2.2 159 chr3L 14522084 intron bbg - chr3L 14522164 intron bbg - chr3L 14522243 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-703 1105 chr3L 14584149 14584181 chr3L 14584256 14584262 9 104 3.0 3.5 3.2 2.1 113 chr3L 14584149 intron HGTX - chr3L 14584206 intron HGTX - chr3L 14584262 intron HGTX - chr3L_9_14580001 chr3L_14580001 RAL-703 1106 chr3L 14633778 14633805 chr3L 14633881 14633920 5 113 1.5 1.0 1.2 2.3 142 chr3L 14633778 intron dlp + chr3L 14633849 intron dlp + chr3L 14633920 intron dlp + chr3L_5_14630001 chr3L_14630001 RAL-703 1107 chr3L 14721171 14721206 chr3L 14723028 14723068 Rt1c 9 1855 4.5 3.0 3.8 1.9 1897 chr3L 14721171 intron ome + chr3L 14722120 intron ome + chr3L 14723068 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-703 1108 chr3L 14725585 14725614 chr3L 14728603 14728632 Doc 4 3014 3.0 4.0 3.5 0.9 3047 chr3L 14725585 intron ome + chr3L 14727108 intron ome + chr3L 14728632 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-703 1109 chr3L 14729493 14729539 chr3L 14729626 14729672 14 127 3.5 0.0 1.8 5.0 179 chr3L 14729493 intron ome + chr3L 14729582 intron ome + chr3L 14729672 intron ome + chr3L_14_14725001 chr3L_14725001 RAL-703 1110 chr3L 14861799 14861822 chr3L 14861883 14861922 5 90 1.0 0.0 0.5 3.3 123 chr3L 14861799 intron CG17839 + chr3L 14861860 intron CG17839 + chr3L 14861922 intron CG17839 + chr3L_5_14860001 chr3L_14860001 RAL-703 1111 chr3L 14867603 14867649 chr3L 14867707 14867752 11 101 3.5 4.5 4.0 2.2 149 chr3L 14867603 exon CG17839 + chr3L 14867678 intron CG17839 + chr3L 14867752 intron CG17839 + chr3L_11_14865001 chr3L_14865001 RAL-703 1112 chr3L 14918608 14918628 chr3L 14918695 14918741 8 103 1.0 4.5 2.8 2.1 133 chr3L 14918608 intron DCX-EMAP + chr3L 14918674 intron DCX-EMAP + chr3L 14918741 intron DCX-EMAP + chr3L_8_14915001 chr3L_14915001 RAL-703 1113 chr3L 14924930 14924964 chr3L 14925085 14925119 6 154 4.5 2.0 3.2 1.4 189 chr3L 14924930 intron DCX-EMAP + chr3L 14925024 intron DCX-EMAP + chr3L 14925119 intron DCX-EMAP + chr3L_6_14925001 chr3L_14925001 RAL-703 1114 chr3L 14961860 14961909 chr3L 14962230 14962279 10 363 3.5 1.5 2.5 2.9 419 chr3L 14961860 intergenic not near genes chr3L 14962070 intergenic not near genes chr3L 14962279 intergenic not near genes chr3L_10_14960001 chr3L_14960001 RAL-703 1115 chr3L 15085046 15085071 chr3L 15086232 15086241 1360 4 1182 3.0 5.5 4.2 0.8 1195 chr3L 15085046 intron cp309 - chr3L 15085644 intron cp309 - chr3L 15086241 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-703 1116 chr3L 15100414 15100462 chr3L 15100521 15100540 4 100 3.5 1.0 2.2 1.2 126 chr3L 15100414 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100477 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100540 intron,3` UTR CTPsyn +,CR43972 - chr3L_4_15100001 chr3L_15100001 RAL-703 1117 chr3L 15233543 15233584 chr3L 15233644 15233669 4 96 3.0 2.0 2.5 1.1 126 chr3L 15233543 intergenic not near genes chr3L 15233606 intergenic not near genes chr3L 15233669 intergenic not near genes chr3L_4_15230001 chr3L_15230001 RAL-703 1118 chr3L 15333139 15333165 chr3L 15333238 15333266 5 98 2.0 4.5 3.2 1.2 127 chr3L 15333139 intergenic CR43247 + chr3L 15333202 intergenic CR43247 + chr3L 15333266 intergenic CR43247 + chr3L_5_15330001 chr3L_15330001 RAL-703 1119 chr3L 15335461 15335488 chr3L 15335602 15335630 4 140 3.0 2.0 2.5 1.1 169 chr3L 15335461 intron CR43992 + chr3L 15335546 intron CR43992 + chr3L 15335630 intron CR43992 + chr3L_4_15335001 chr3L_15335001 RAL-703 1120 chr3L 15444632 15444685 chr3L 15444746 15444774 8 106 3.0 5.0 4.0 1.6 142 chr3L 15444632 intergenic not near genes chr3L 15444703 intergenic not near genes chr3L 15444774 intergenic not near genes chr3L_8_15440001 chr3L_15440001 RAL-703 1121 chr3L 15502497 15502534 chr3L 15502593 15502633 7 92 0.0 4.5 2.2 2.2 136 chr3L 15502497 intron CG7272 + chr3L 15502565 intron CG7272 + chr3L 15502633 intron CG7272 + chr3L_7_15500001 chr3L_15500001 RAL-703 1122 chr3L 15554916 15554944 chr3L 15556723 15556740 S-element 5 1803 2.5 5.0 3.8 1.0 1824 chr3L 15554916 intron AGO2 + chr3L 15555828 intron AGO2 + chr3L 15556740 intron AGO2 + chr3L_5_15555001 chr3L_15555001 RAL-703 1123 chr3L 15600149 15600197 chr3L 15600254 15600318 5 118 3.5 0.0 1.8 1.8 169 chr3L 15600149 intron RhoGAP71E + chr3L 15600234 intron RhoGAP71E + chr3L 15600318 intron RhoGAP71E + chr3L_5_15600001 chr3L_15600001 RAL-703 1124 chr3L 15633185 15633212 chr3L 15633285 15633311 4 98 2.0 1.0 1.5 1.6 126 chr3L 15633185 intron comm3 - chr3L 15633248 intron comm3 - chr3L 15633311 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-703 1125 chr3L 15651170 15651201 chr3L 15651272 15651303 6 100 4.5 2.5 3.5 1.3 133 chr3L 15651170 exon CG43084 + chr3L 15651236 exon CG43084 + chr3L 15651303 exon CG43084 + chr3L_6_15650001 chr3L_15650001 RAL-703 1126 chr3L 15756865 15756910 chr3L 15756968 15756992 5 98 3.5 1.0 2.2 1.6 127 chr3L 15756865 intergenic not near genes chr3L 15756928 intergenic not near genes chr3L 15756992 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-703 1127 chr3L 15769100 15769121 chr3L 15769212 15769233 5 112 1.0 2.5 1.8 1.8 133 chr3L 15769100 intergenic not near genes chr3L 15769166 intergenic not near genes chr3L 15769233 intergenic not near genes chr3L_5_15765001 chr3L_15765001 RAL-703 1128 chr3L 15840413 15840429 chr3L 15840521 15840529 4 106 3.5 1.5 2.5 1.1 116 chr3L 15840413 intron CG32150 - chr3L 15840471 intron CG32150 - chr3L 15840529 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-703 1129 chr3L 15899222 15899253 chr3L 15899790 15899820 jockey 9 573 2.5 3.0 2.8 2.4 598 chr3L 15899222 intergenic pHCl - chr3L 15899521 intergenic pHCl - chr3L 15899820 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-703 1130 chr3L 15914319 15914345 chr3L 15914427 15914444 4 101 1.0 2.5 1.8 1.4 125 chr3L 15914319 intron sff - chr3L 15914382 intron sff - chr3L 15914444 intron sff - chr3L_4_15910001 chr3L_15910001 RAL-703 1131 chr3L 15918091 15918133 chr3L 15918203 15918237 8 113 1.0 4.0 2.5 2.3 146 chr3L 15918091 intron sff - chr3L 15918164 intron sff - chr3L 15918237 intron sff - chr3L_8_15915001 chr3L_15915001 RAL-703 1132 chr3L 16070723 16070762 chr3L 16070820 16070859 7 96 2.5 1.5 2.0 2.3 136 chr3L 16070723 intron Mbs + chr3L 16070791 intron Mbs + chr3L 16070859 exon Mbs + chr3L_7_16070001 chr3L_16070001 RAL-703 1133 chr3L 16162588 16162604 chr3L 16162691 16162706 5 102 4.0 2.0 3.0 1.2 118 chr3L 16162588 intron CG5151 - chr3L 16162647 intron CG5151 - chr3L 16162706 intron CG5151 - chr3L_5_16160001 chr3L_16160001 RAL-703 1134 chr3L 16162785 16162828 chr3L 16163111 16163153 9 325 2.0 4.0 3.0 2.2 368 chr3L 16162785 intron CG5151 - chr3L 16162969 intron CG5151 - chr3L 16163153 intron CG5151 - chr3L_9_16160001 chr3L_16160001 RAL-703 1135 chr3L 16184097 16184116 chr3L 16188930 16188954 X-element 4 4835 8.0 8.0 8.0 0.4 4857 chr3L 16184097 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188954 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-703 1136 chr3L 16212795 16212836 chr3L 16212906 16212947 8 110 4.0 0.5 2.2 2.5 152 chr3L 16212795 intergenic CG13073 - chr3L 16212871 intergenic CG13073 - chr3L 16212947 intergenic CG13073 - chr3L_8_16210001 chr3L_16210001 RAL-703 1137 chr3L 16340243 16340286 chr3L 16340387 16340418 8 142 2.5 2.5 2.5 2.3 175 chr3L 16340243 intron CG4998 + chr3L 16340330 intron CG4998 + chr3L 16340418 intron CG4998 + chr3L_8_16340001 chr3L_16340001 RAL-703 1138 chr3L 16407630 16407635 chr3L 16407738 16407744 5 108 0.5 3.0 1.8 1.8 114 chr3L 16407630 intron fax - chr3L 16407687 intron fax - chr3L 16407744 intron fax - chr3L_5_16405001 chr3L_16405001 RAL-703 1139 chr3L 16408533 16408556 chr3L 16408630 16408654 6 94 5.5 4.5 5.0 1.0 121 chr3L 16408533 intron fax - chr3L 16408594 intron fax - chr3L 16408654 intron fax - chr3L_6_16405001 chr3L_16405001 RAL-703 1140 chr3L 16493994 16494012 chr3L 16494513 16494549 jockey 5 533 0.0 3.5 1.8 1.8 555 chr3L 16493994 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494272 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494549 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-703 1141 chr3L 16610668 16610711 chr3L 16610770 16610814 6 103 2.0 1.5 1.8 2.1 146 chr3L 16610668 3` UTR Su(P) - chr3L 16610741 exon Su(P) - chr3L 16610814 exon Su(P) - chr3L_6_16610001 chr3L_16610001 RAL-703 1142 chr3L 16757633 16757669 chr3L 16757731 16757779 7 106 1.0 1.0 1.0 3.5 146 chr3L 16757633 intergenic not near genes chr3L 16757706 intergenic not near genes chr3L 16757779 intergenic not near genes chr3L_7_16755001 chr3L_16755001 RAL-703 1143 chr3L 16807774 16808061 chr3L 16807867 16808147 13 94 2.5 1.5 2.0 4.3 373 chr3L 16807774 intron nudC + chr3L 16807960 intron nudC + chr3L 16808147 intron nudC + chr3L_13_16805001 chr3L_16805001 RAL-703 1144 chr3L 16830772 16830792 chr3L 16830865 16830895 8 100 2.0 2.5 2.2 2.5 123 chr3L 16830772 intergenic not near genes chr3L 16830834 intergenic not near genes chr3L 16830895 intergenic not near genes chr3L_8_16830001 chr3L_16830001 RAL-703 1145 chr3L 16845022 16845028 chr3L 16845137 16845160 4 122 2.5 3.0 2.8 1.1 138 chr3L 16845022 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845091 intergenic CG9669 -,CG9715 + chr3L 16845160 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-703 1146 chr3L 16873332 16873352 chr3L 16873451 16873476 7 120 3.5 2.0 2.8 1.8 144 chr3L 16873332 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873476 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-703 1147 chr3L 16945715 16945760 chr3L 16954885 16954912 roo 11 9167 4.5 7.0 5.8 1.6 9197 chr3L 16945715 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-703 1148 chr3L 17026771 17026815 chr3L 17026871 17026913 6 96 3.5 2.0 2.8 1.6 142 chr3L 17026771 exon Fit2 + chr3L 17026842 3` UTR Fit2 + chr3L 17026913 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-703 1149 chr3L 17034923 17034957 chr3L 17035131 17035159 G2 6 207 1.5 2.5 2.0 2.0 236 chr3L 17034923 intergenic not near genes chr3L 17035041 intergenic not near genes chr3L 17035159 intergenic not near genes chr3L_6_17035001 chr3L_17035001 RAL-703 1150 chr3L 17084987 17085038 chr3L 17094156 17094207 roo 10 9169 2.0 4.0 3.0 2.5 9220 chr3L 17084987 intron Rbp6 - chr3L 17089597 intron Rbp6 - chr3L 17094207 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-703 1151 chr3L 17113849 17113900 chr3L 17113954 17114002 10 102 1.0 3.5 2.2 3.1 153 chr3L 17113849 intron Rbp6 - chr3L 17113926 intron Rbp6 - chr3L 17114002 intron Rbp6 - chr3L_10_17110001 chr3L_17110001 RAL-703 1152 chr3L 17117086 17117128 chr3L 17117191 17117214 4 96 3.5 2.0 2.8 1.1 128 chr3L 17117086 intron Rbp6 - chr3L 17117150 intron Rbp6 - chr3L 17117214 intron Rbp6 - chr3L_4_17115001 chr3L_17115001 RAL-703 1153 chr3L 17164356 17164382 chr3L 17164515 17164539 8 158 2.5 0.5 1.5 3.2 183 chr3L 17164356 intron Rbp6 - chr3L 17164448 intron Rbp6 - chr3L 17164539 intron Rbp6 - chr3L_8_17160001 chr3L_17160001 RAL-703 1154 chr3L 17272228 17272258 chr3L 17272381 17272411 7 152 1.5 5.5 3.5 1.6 183 chr3L 17272228 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272411 intergenic not near genes chr3L_7_17270001 chr3L_17270001 RAL-703 1155 chr3L 17408172 17408212 chr3L 17408486 17408528 13 311 4.0 2.0 3.0 3.2 356 chr3L 17408172 intron blot - chr3L 17408350 intron blot - chr3L 17408528 intron blot - chr3L_13_17405001 chr3L_17405001 RAL-703 1156 chr3L 17495238 17495258 chr3L 17495349 17495362 7 118 3.0 4.5 3.8 1.5 124 chr3L 17495238 intron,3` UTR Oatp74D +,edin + chr3L 17495300 intron,3` UTR Oatp74D +,edin + chr3L 17495362 intron Oatp74D + chr3L_7_17495001 chr3L_17495001 RAL-703 1157 chr3L 17498084 17498114 chr3L 17498178 17498209 9 95 4.5 2.5 3.5 2.0 125 chr3L 17498084 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498209 intron Oatp74D + chr3L_9_17495001 chr3L_17495001 RAL-703 1158 chr3L 17510739 17510760 chr3L 17510830 17510842 7 96 0.5 3.5 2.0 2.3 103 chr3L 17510739 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510842 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-703 1159 chr3L 17516976 17516987 chr3L 17524539 17524551 412 4 7569 1.0 1.0 1.0 2.0 7575 chr3L 17516976 intron CG7564 + chr3L 17520764 intron CG7564 + chr3L 17524551 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-703 1160 chr3L 17592788 17592821 chr3L 17592899 17592932 6 107 0.0 1.0 0.5 4.0 144 chr3L 17592788 intron Eip74EF - chr3L 17592860 intron Eip74EF - chr3L 17592932 intron Eip74EF - chr3L_6_17590001 chr3L_17590001 RAL-703 1161 chr3L 17646019 17646056 chr3L 17646165 17646201 6 152 13.0 15.0 14.0 0.4 182 chr3L 17646019 exon CG43085 - chr3L 17646110 exon CG43085 - chr3L 17646201 exon CG43085 - chr3L_6_17645001 chr3L_17645001 RAL-703 1162 chr3L 17789826 17789877 chr3L 17789922 17789973 6 96 3.0 3.0 3.0 1.5 147 chr3L 17789826 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789973 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-703 1163 chr3L 17799793 17799837 chr3L 17801600 17801644 S-element 8 1806 2.0 2.0 2.0 2.7 1851 chr3L 17799793 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801644 intron NUCB1 - chr3L_8_17800001 chr3L_17800001 RAL-703 1164 chr3L 17837614 17837653 chr3L 17837711 17837761 13 104 3.0 3.0 3.0 3.2 147 chr3L 17837614 exon Grd + chr3L 17837688 intron Grd + chr3L 17837761 exon Grd + chr3L_13_17835001 chr3L_17835001 RAL-703 1165 chr3L 17918364 17918394 chr3L 17921187 17921216 opus 7 2819 4.0 3.5 3.8 1.5 2852 chr3L 17918364 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921216 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-703 1166 chr3L 17991576 17991589 chr3L 17991660 17991687 8 94 8.0 4.0 6.0 1.1 111 chr3L 17991576 intron Eip75B - chr3L 17991632 intron Eip75B - chr3L 17991687 intron Eip75B - chr3L_8_17990001 chr3L_17990001 RAL-703 1167 chr3L 18000652 18000704 chr3L 18000749 18000801 11 96 3.5 3.0 3.2 2.6 149 chr3L 18000652 intron Eip75B - chr3L 18000726 intron Eip75B - chr3L 18000801 intron Eip75B - chr3L_11_18000001 chr3L_18000001 RAL-703 1168 chr3L 18021353 18021383 chr3L 18021446 18021478 8 103 4.0 5.5 4.8 1.4 125 chr3L 18021353 intron Eip75B - chr3L 18021416 intron Eip75B - chr3L 18021478 intron Eip75B - chr3L_8_18020001 chr3L_18020001 RAL-703 1169 chr3L 18029945 18029969 chr3L 18030042 18030049 4 92 5.0 0.5 2.8 1.1 104 chr3L 18029945 intron Eip75B - chr3L 18029997 intron Eip75B - chr3L 18030049 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-703 1170 chr3L 18042227 18042271 chr3L 18042325 18042368 4 98 1.0 0.0 0.5 2.7 141 chr3L 18042227 intron Eip75B - chr3L 18042298 intron Eip75B - chr3L 18042368 intron Eip75B - chr3L_4_18040001 chr3L_18040001 RAL-703 1171 chr3L 18057955 18058006 chr3L 18058076 18058087 6 108 4.5 2.5 3.5 1.3 132 chr3L 18057955 intron Eip75B - chr3L 18058021 intron Eip75B - chr3L 18058087 intron Eip75B - chr3L_6_18055001 chr3L_18055001 RAL-703 1172 chr3L 18077940 18077956 chr3L 18078045 18078066 6 113 7.5 3.0 5.2 1.0 126 chr3L 18077940 5` UTR CR45392 + chr3L 18078003 5` UTR CR45392 + chr3L 18078066 5` UTR CR45392 + chr3L_6_18075001 chr3L_18075001 RAL-703 1173 chr3L 18118194 18118241 chr3L 18118292 18118339 8 97 2.0 2.5 2.2 2.5 145 chr3L 18118194 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118339 3` UTR,intron CG32195 +,CG7341 + chr3L_8_18115001 chr3L_18115001 RAL-703 1174 chr3L 18150303 18150345 chr3L 18150420 18150462 6 113 1.5 1.0 1.2 2.7 159 chr3L 18150303 intron CG7330 + chr3L 18150382 intron CG7330 + chr3L 18150462 intron CG7330 + chr3L_6_18150001 chr3L_18150001 RAL-703 1175 chr3L 18172679 18172699 chr3L 18172775 18172777 4 91 5.0 5.5 5.2 0.6 98 chr3L 18172679 intron W - chr3L 18172728 intron W - chr3L 18172777 intron W - chr3L_4_18170001 chr3L_18170001 RAL-703 1176 chr3L 18175817 18175838 chr3L 18176076 18176096 5 258 3.5 3.0 3.2 1.2 279 chr3L 18175817 intron W - chr3L 18175956 intron W - chr3L 18176096 intron W - chr3L_5_18175001 chr3L_18175001 RAL-703 1177 chr3L 18406111 18406151 chr3L 18406207 18406247 4 90 2.0 2.5 2.2 1.2 136 chr3L 18406111 intergenic not near genes chr3L 18406179 intergenic not near genes chr3L 18406247 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-703 1178 chr3L 18408736 18408753 chr3L 18408839 18408859 6 105 4.0 3.0 3.5 1.3 123 chr3L 18408736 intergenic not near genes chr3L 18408798 intergenic not near genes chr3L 18408859 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-703 1179 chr3L 18436063 18436087 chr3L 18436181 18436205 4 118 1.0 2.0 1.5 1.6 142 chr3L 18436063 intergenic not near genes chr3L 18436134 intergenic not near genes chr3L 18436205 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-703 1180 chr3L 18448601 18448612 chr3L 18448713 18448713 4 109 3.0 2.0 2.5 1.1 112 chr3L 18448601 intergenic not near genes chr3L 18448657 intergenic not near genes chr3L 18448713 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-703 1181 chr3L 18456265 18456303 chr3L 18456373 18456411 10 106 4.5 5.0 4.8 1.7 146 chr3L 18456265 intergenic CR44670 - chr3L 18456338 intergenic CR44670 - chr3L 18456411 3` UTR CR44670 - chr3L_10_18455001 chr3L_18455001 RAL-703 1182 chr3L 18485690 18485716 chr3L 18485779 18485820 4 101 1.0 2.5 1.8 1.4 130 chr3L 18485690 3` UTR AstC-R2 - chr3L 18485755 3` UTR AstC-R2 - chr3L 18485820 3` UTR AstC-R2 - chr3L_4_18485001 chr3L_18485001 RAL-703 1183 chr3L 18497375 18497400 chr3L 18497525 18497542 6 158 1.5 3.5 2.5 1.7 167 chr3L 18497375 intron AstC-R2 - chr3L 18497458 intron AstC-R2 - chr3L 18497542 intron AstC-R2 - chr3L_6_18495001 chr3L_18495001 RAL-703 1184 chr3L 18528612 18528658 chr3L 18537793 18537832 roo 4 9174 0.5 2.5 1.5 1.6 9220 chr3L 18528612 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537832 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-703 1185 chr3L 18546686 18546731 chr3L 18546800 18546839 8 111 1.0 3.0 2.0 2.7 153 chr3L 18546686 intergenic not near genes chr3L 18546762 intergenic not near genes chr3L 18546839 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-703 1186 chr3L 18581323 18581358 chr3L 18581407 18581454 8 94 3.5 4.0 3.8 1.7 131 chr3L 18581323 intergenic not near genes chr3L 18581388 intergenic not near genes chr3L 18581454 intergenic not near genes chr3L_8_18580001 chr3L_18580001 RAL-703 1187 chr3L 18656166 18656215 chr3L 18656271 18656282 11 95 3.0 0.5 1.8 3.9 116 chr3L 18656166 intron MYPT-75D + chr3L 18656224 intron MYPT-75D + chr3L 18656282 intron MYPT-75D + chr3L_11_18655001 chr3L_18655001 RAL-703 1188 chr3L 18677871 18677914 chr3L 18677986 18678029 12 113 2.5 3.5 3.0 3.0 158 chr3L 18677871 3` UTR GNBP1 + chr3L 18677950 intergenic GNBP1 + chr3L 18678029 intergenic GNBP1 + chr3L_12_18675001 chr3L_18675001 RAL-703 1189 chr3L 18682641 18682669 chr3L 18682821 18682872 9 186 25.0 25.5 25.2 0.3 231 chr3L 18682641 exon CG32202 + chr3L 18682756 exon CG32202 + chr3L 18682872 intergenic CG32202 +,Chmp1 - chr3L_9_18680001 chr3L_18680001 RAL-703 1190 chr3L 18721771 18721798 chr3L 18721881 18721909 8 108 5.0 4.5 4.8 1.4 138 chr3L 18721771 intergenic CG12477 - chr3L 18721840 intergenic CG12477 - chr3L 18721909 3` UTR CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-703 1191 chr3L 18753530 18753559 chr3L 18753631 18753646 11 100 0.5 0.5 0.5 7.3 116 chr3L 18753530 intron ftz-f1 - chr3L 18753588 intron ftz-f1 - chr3L 18753646 intron ftz-f1 - chr3L_11_18750001 chr3L_18750001 RAL-703 1192 chr3L 18772393 18772420 chr3L 18781094 18781121 roo 6 8701 2.5 4.5 3.5 1.3 8728 chr3L 18772393 intron ftz-f1 - chr3L 18776757 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-703 1193 chr3L 18833775 18833807 chr3L 18834949 18834991 1360 5 1176 1.0 1.5 1.2 2.3 1216 chr3L 18833775 intron Indy - chr3L 18834383 intron Indy - chr3L 18834991 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-703 1194 chr3L 18885982 18886002 chr3L 18886078 18886091 5 95 1.0 3.0 2.0 1.7 109 chr3L 18885982 intron CG3961 - chr3L 18886036 intron CG3961 - chr3L 18886091 intron CG3961 - chr3L_5_18885001 chr3L_18885001 RAL-703 1195 chr3L 18896764 18896791 chr3L 18896896 18896946 4 149 1.5 1.5 1.5 1.6 182 chr3L 18896764 intron CG3902 - chr3L 18896855 intron CG3902 - chr3L 18896946 intron CG3902 - chr3L_4_18895001 chr3L_18895001 RAL-703 1196 chr3L 18924459 18924509 chr3L 18924555 18924605 4 95 1.5 2.5 2.0 1.3 146 chr3L 18924459 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924605 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-703 1197 chr3L 18929939 18929987 chr3L 18930040 18930091 10 101 0.5 1.0 0.8 5.6 152 chr3L 18929939 intron CG32204 - chr3L 18930015 intron CG32204 - chr3L 18930091 exon CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-703 1198 chr3L 18933613 18933660 chr3L 18933727 18933774 18 110 1.0 3.5 2.2 5.6 161 chr3L 18933613 intron CG32204 - chr3L 18933694 intron CG32204 - chr3L 18933774 intron CG32204 - chr3L_18_18930001 chr3L_18930001 RAL-703 1199 chr3L 18951002 18951048 chr3L 18951099 18951145 7 97 4.0 3.0 3.5 1.6 143 chr3L 18951002 intron CG6836 + chr3L 18951074 intron CG6836 + chr3L 18951145 intron CG6836 + chr3L_7_18950001 chr3L_18950001 RAL-703 1200 chr3L 19008834 19008866 chr3L 19009176 19009223 jockey 4 351 1.5 2.0 1.8 1.4 389 chr3L 19008834 intron nkd - chr3L 19009028 intron nkd - chr3L 19009223 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-703 1201 chr3L 19029454 19029475 chr3L 19029561 19029581 4 112 3.0 2.0 2.5 1.1 127 chr3L 19029454 intron nkd - chr3L 19029518 intron nkd - chr3L 19029581 intron nkd - chr3L_4_19025001 chr3L_19025001 RAL-703 1202 chr3L 19115634 19115672 chr3L 19115826 19115852 BS 6 191 2.5 3.0 2.8 1.6 218 chr3L 19115634 intron CG14082 - chr3L 19115743 intron CG14082 - chr3L 19115852 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-703 1203 chr3L 19117036 19117072 chr3L 19124487 19124538 mdg1 13 7459 2.5 3.0 2.8 3.4 7502 chr3L 19117036 intron CG14082 - chr3L 19120787 intron CG14082 - chr3L 19124538 intron CG14082 - chr3L_13_19120001 chr3L_19120001 RAL-703 1204 chr3L 19135592 19135628 chr3L 19135717 19135752 9 124 1.0 4.5 2.8 2.4 160 chr3L 19135592 intron CG14082 - chr3L 19135672 intron CG14082 - chr3L 19135752 intron CG14082 - chr3L_9_19135001 chr3L_19135001 RAL-703 1205 chr3L 19182365 19182416 chr3L 19182466 19182516 11 91 1.0 5.0 3.0 2.8 151 chr3L 19182365 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182516 intron fz2 - chr3L_11_19180001 chr3L_19180001 RAL-703 1206 chr3L 19208054 19208090 chr3L 19209433 19209483 Doc 8 1389 4.0 3.0 3.5 1.8 1429 chr3L 19208054 intron fz2 - chr3L 19208768 intron fz2 - chr3L 19209483 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-703 1207 chr3L 19210103 19210128 chr3L 19210219 19210244 9 116 0.5 3.5 2.0 3.0 141 chr3L 19210103 intron fz2 - chr3L 19210174 intron fz2 - chr3L 19210244 intron fz2 - chr3L_9_19210001 chr3L_19210001 RAL-703 1208 chr3L 19216497 19216537 chr3L 19216594 19216610 7 90 2.0 2.5 2.2 2.2 113 chr3L 19216497 intron fz2 - chr3L 19216554 intron fz2 - chr3L 19216610 intron fz2 - chr3L_7_19215001 chr3L_19215001 RAL-703 1209 chr3L 19222381 19222393 chr3L 19222517 19222534 4 140 1.5 3.5 2.5 1.1 153 chr3L 19222381 intron fz2 - chr3L 19222458 intron fz2 - chr3L 19222534 intron fz2 - chr3L_4_19220001 chr3L_19220001 RAL-703 1210 chr3L 19244094 19244129 chr3L 19244192 19244203 7 89 5.0 3.5 4.2 1.3 109 chr3L 19244094 intergenic not near genes chr3L 19244148 intergenic not near genes chr3L 19244203 intergenic not near genes chr3L_7_19240001 chr3L_19240001 RAL-703 1211 chr3L 19262228 19262241 chr3L 19262329 19262343 4 102 0.0 6.5 3.2 1.0 115 chr3L 19262228 3` UTR Bet1 + chr3L 19262286 3` UTR,3` UTR Bet1 +,Max - chr3L 19262343 3` UTR,3` UTR Bet1 +,Max - chr3L_4_19260001 chr3L_19260001 RAL-703 1212 chr3L 19336979 19337003 chr3L 19337085 19337108 7 104 2.5 1.5 2.0 2.3 129 chr3L 19336979 intron pip - chr3L 19337044 intron pip - chr3L 19337108 intron pip - chr3L_7_19335001 chr3L_19335001 RAL-703 1213 chr3L 19342749 19342776 chr3L 19342860 19342887 4 110 2.5 2.0 2.2 1.2 138 chr3L 19342749 3` UTR CG32206 - chr3L 19342818 3` UTR CG32206 - chr3L 19342887 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-703 1214 chr3L 19346873 19346883 chr3L 19346962 19346982 5 95 0.0 7.5 3.8 1.0 109 chr3L 19346873 intron CG32206 - chr3L 19346928 intron CG32206 - chr3L 19346982 intron CG32206 - chr3L_5_19345001 chr3L_19345001 RAL-703 1215 chr3L 19404958 19405006 chr3L 19405054 19405071 11 92 3.0 1.5 2.2 3.4 113 chr3L 19404958 intron CG32206 - chr3L 19405014 intron CG32206 - chr3L 19405071 intron CG32206 - chr3L_11_19405001 chr3L_19405001 RAL-703 1216 chr3L 19488482 19488495 chr3L 19488580 19488591 4 97 2.5 4.0 3.2 1.0 109 chr3L 19488482 intergenic pncr009:3L -,CG32212 + chr3L 19488536 intergenic pncr009:3L -,CG32212 + chr3L 19488591 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-703 1217 chr3L 19641347 19641378 chr3L 19641463 19641494 8 116 6.0 5.0 5.5 1.2 147 chr3L 19641347 intron CG8786 - chr3L 19641420 intron CG8786 - chr3L 19641494 intron CG8786 - chr3L_8_19640001 chr3L_19640001 RAL-703 1218 chr3L 19641380 19641393 chr3L 19641460 19641495 6 108 4.5 5.0 4.8 1.0 115 chr3L 19641380 intron CG8786 - chr3L 19641438 intron CG8786 - chr3L 19641495 intron CG8786 - chr3L_6_19640001 chr3L_19640001 RAL-703 1219 chr3L 19848490 19848502 chr3L 19857700 19857712 roo 5 9209 4.5 3.0 3.8 1.0 9222 chr3L 19848490 intron Papss + chr3L 19853101 intron Papss + chr3L 19857712 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-703 1220 chr3L 19848505 19848532 chr3L 19857692 19857741 roo 4 9204 3.5 1.5 2.5 1.1 9236 chr3L 19848505 intron Papss + chr3L 19853123 intron Papss + chr3L 19857741 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-703 1221 chr3L 19861817 19861850 chr3L 19863621 19863658 S-element 4 1807 3.0 3.0 3.0 1.0 1841 chr3L 19861817 5` UTR CR45433 + chr3L 19862738 intergenic not near genes chr3L 19863658 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-703 1222 chr3L 19933540 19933543 chr3L 19934371 19934385 4 836 2.5 3.0 2.8 1.1 845 chr3L 19933540 intergenic CR45678 + chr3L 19933962 5` UTR CR45678 + chr3L 19934385 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-703 1223 chr3L 19981194 19981231 chr3L 19981283 19981331 5 96 2.0 3.0 2.5 1.4 137 chr3L 19981194 intergenic CG17732 + chr3L 19981262 intergenic CG17732 + chr3L 19981331 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-703 1224 chr3L 20038798 20038853 chr3L 20038996 20039050 8 191 0.0 2.0 1.0 4.0 252 chr3L 20038798 intergenic not near genes chr3L 20038924 intergenic not near genes chr3L 20039050 intergenic not near genes chr3L_8_20035001 chr3L_20035001 RAL-703 1225 chr3L 20113646 20113673 chr3L 20122922 20122950 roo 5 9277 2.0 2.0 2.0 1.7 9304 chr3L 20113646 intergenic not near genes chr3L 20118298 intergenic not near genes chr3L 20122950 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-703 1226 chr3L 20157952 20157991 chr3L 20158070 20158107 6 117 3.5 1.5 2.5 1.7 155 chr3L 20157952 intron CG42674 - chr3L 20158030 intron CG42674 - chr3L 20158107 intron CG42674 - chr3L_6_20155001 chr3L_20155001 RAL-703 1227 chr3L 20187455 20187477 chr3L 20187553 20187576 6 98 15.0 13.5 14.2 0.4 121 chr3L 20187455 intron CG42674 - chr3L 20187516 intron CG42674 - chr3L 20187576 intron CG42674 - chr3L_6_20185001 chr3L_20185001 RAL-703 1228 chr3L 20256825 20256857 chr3L 20256923 20256959 6 101 2.5 6.5 4.5 1.1 134 chr3L 20256825 intron rdgC + chr3L 20256892 intron rdgC + chr3L 20256959 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-703 1229 chr3L 20386920 20386972 chr3L 20387042 20387094 12 118 2.0 2.5 2.2 3.8 174 chr3L 20386920 intron fbl + chr3L 20387007 intron fbl + chr3L 20387094 intron fbl + chr3L_12_20385001 chr3L_20385001 RAL-703 1230 chr3L 20403571 20403604 chr3L 20403685 20403719 7 112 3.5 2.0 2.8 1.8 148 chr3L 20403571 intergenic not near genes chr3L 20403645 intergenic not near genes chr3L 20403719 intergenic not near genes chr3L_7_20400001 chr3L_20400001 RAL-703 1231 chr3L 20431570 20431622 chr3L 20431743 20431793 12 167 1.0 1.5 1.2 5.5 223 chr3L 20431570 exon Las - chr3L 20431682 intron Las - chr3L 20431793 intron Las - chr3L_12_20430001 chr3L_20430001 RAL-703 1232 chr3L 20476737 20476780 chr3L 20484356 20484399 springer 7 7616 3.0 5.0 4.0 1.4 7662 chr3L 20476737 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484399 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-703 1233 chr3L 20590043 20590090 chr3L 20590602 20590630 412 6 551 2.5 3.5 3.0 1.5 587 chr3L 20590043 intergenic not near genes chr3L 20590336 intergenic not near genes chr3L 20590630 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-703 1234 chr3L 20705726 20705736 chr3L 20705803 20705818 5 88 2.5 7.0 4.8 0.9 92 chr3L 20705726 intergenic not near genes chr3L 20705772 intergenic not near genes chr3L 20705818 intergenic not near genes chr3L_5_20705001 chr3L_20705001 RAL-703 1235 chr3L 20752605 20752646 chr3L 20755537 20755578 7 2931 0.5 1.5 1.0 3.5 2973 chr3L 20752605 intergenic not near genes chr3L 20754092 intergenic not near genes chr3L 20755578 intron CG33912 - chr3L_7_20750001 chr3L_20750001 RAL-703 1236 chr3L 20858050 20858105 chr3L 20858168 20858220 13 113 2.0 0.5 1.2 5.9 170 chr3L 20858050 intron CG32432 - chr3L 20858135 intron CG32432 - chr3L 20858220 intron CG32432 - chr3L_13_20855001 chr3L_20855001 RAL-703 1237 chr3L 20912150 20912190 chr3L 20912273 20912316 11 122 6.0 2.5 4.2 2.1 166 chr3L 20912150 intergenic not near genes chr3L 20912233 intergenic not near genes chr3L 20912316 intergenic not near genes chr3L_11_20910001 chr3L_20910001 RAL-703 1238 chr3L 20913730 20913774 chr3L 20913831 20913861 13 88 1.5 2.0 1.8 4.6 131 chr3L 20913730 intergenic CR43930 - chr3L 20913796 intergenic CR43930 - chr3L 20913861 intergenic CR43930 - chr3L_13_20910001 chr3L_20910001 RAL-703 1239 chr3L 20935180 20935196 chr3L 20935282 20935282 4 98 6.0 2.5 4.2 0.8 102 chr3L 20935180 intron fng - chr3L 20935231 intron fng - chr3L 20935282 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-703 1240 chr3L 20935198 20935212 chr3L 20935278 20935312 4 95 2.5 2.0 2.2 1.2 114 chr3L 20935198 intron fng - chr3L 20935255 intron fng - chr3L 20935312 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-703 1241 chr3L 20936858 20936881 chr3L 20936967 20936993 4 110 3.0 4.0 3.5 0.9 135 chr3L 20936858 intron fng - chr3L 20936926 intron fng - chr3L 20936993 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-703 1242 chr3L 20936884 20936893 chr3L 20936954 20937005 4 101 2.5 3.5 3.0 1.0 121 chr3L 20936884 intron fng - chr3L 20936944 intron fng - chr3L 20937005 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-703 1243 chr3L 21014898 21014948 chr3L 21023399 21023430 Tirant 12 8492 6.0 5.0 5.5 1.8 8532 chr3L 21014898 intron skd - chr3L 21019164 intron skd - chr3L 21023430 intron skd - chr3L_12_21015001 chr3L_21015001 RAL-703 1244 chr3L 21082190 21082226 chr3L 21082287 21082322 6 94 1.5 3.0 2.2 1.9 132 chr3L 21082190 intron ko - chr3L 21082256 intron ko - chr3L 21082322 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-703 1245 chr3L 21130555 21130587 chr3L 21130769 21130797 4 212 2.5 4.5 3.5 0.9 242 chr3L 21130555 intron ko - chr3L 21130676 intron ko - chr3L 21130797 intron ko - chr3L_4_21130001 chr3L_21130001 RAL-703 1246 chr3L 21151856 21151897 chr3L 21156950 21156988 flea 10 5097 6.0 2.5 4.2 1.9 5132 chr3L 21151856 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156988 intron Ac78C - chr3L_10_21150001 chr3L_21150001 RAL-703 1247 chr3L 21301719 21301764 chr3L 21301825 21301861 7 97 1.0 1.5 1.2 3.2 142 chr3L 21301719 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301861 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_7_21300001 chr3L_21300001 RAL-703 1248 chr3L 21306147 21306173 chr3L 21315307 21315352 roo 5 9172 3.5 2.0 2.8 1.3 9205 chr3L 21306147 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310750 intron Pc - chr3L 21315352 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-703 1249 chr3L 21319508 21319557 chr3L 21319618 21319666 12 105 2.5 4.5 3.5 2.7 158 chr3L 21319508 5` UTR Rab26 + chr3L 21319587 5` UTR Rab26 + chr3L 21319666 5` UTR Rab26 + chr3L_12_21315001 chr3L_21315001 RAL-703 1250 chr3L 21361705 21361743 chr3L 21362679 21362715 G2 5 970 1.5 1.5 1.5 2.0 1010 chr3L 21361705 intergenic CG32440 + chr3L 21362210 intergenic not near genes chr3L 21362715 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-703 1251 chr3L 21362849 21362884 chr3L 21362936 21362988 9 100 3.5 2.0 2.8 2.4 139 chr3L 21362849 intergenic not near genes chr3L 21362918 intergenic not near genes chr3L 21362988 intergenic not near genes chr3L_9_21360001 chr3L_21360001 RAL-703 1252 chr3L 21395137 21395172 chr3L 21395243 21395280 6 102 6.5 3.0 4.8 1.0 143 chr3L 21395137 intron rgn + chr3L 21395208 intron rgn + chr3L 21395280 intron rgn + chr3L_6_21395001 chr3L_21395001 RAL-703 1253 chr3L 21406988 21407028 chr3L 21407083 21407124 6 98 2.0 2.5 2.2 1.9 136 chr3L 21406988 intron rgn + chr3L 21407056 intron rgn + chr3L 21407124 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-703 1254 chr3L 21415126 21415160 chr3L 21415229 21415263 11 99 5.5 3.0 4.2 2.1 137 chr3L 21415126 intron rgn + chr3L 21415194 intron rgn + chr3L 21415263 intron rgn + chr3L_11_21415001 chr3L_21415001 RAL-703 1255 chr3L 21498828 21498870 chr3L 21500479 21500517 1360 7 1650 2.5 8.0 5.2 1.1 1689 chr3L 21498828 5` UTR,intron CR43933 +,Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500517 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-703 1256 chr3L 21749302 21749346 chr3L 21754477 21754502 Doc 7 5167 4.0 4.5 4.2 1.3 5200 chr3L 21749302 intron Syn1 - chr3L 21751902 intron Syn1 - chr3L 21754502 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-703 1257 chr3L 21766921 21766955 chr3L 21767211 21767244 11 292 2.5 3.0 2.8 2.9 323 chr3L 21766921 intron Syn1 - chr3L 21767082 intron Syn1 - chr3L 21767244 intron Syn1 - chr3L_11_21765001 chr3L_21765001 RAL-703 1258 chr3L 21840817 21840857 chr3L 21840960 21841001 8 136 5.0 2.5 3.8 1.7 184 chr3L 21840817 intron P5CDh1 - chr3L 21840909 intron P5CDh1 - chr3L 21841001 intron P5CDh1 - chr3L_8_21840001 chr3L_21840001 RAL-703 1259 chr3L 22091590 22091628 chr3L 22091714 22091733 4 114 7.5 8.5 8.0 0.4 143 chr3L 22091590 intergenic not near genes chr3L 22091662 intergenic not near genes chr3L 22091733 intergenic not near genes chr3L_4_22090001 chr3L_22090001 RAL-703 1260 chr3L 22099667 22099705 chr3L 22105873 22105910 3S18 6 6203 5.5 2.5 4.0 1.2 6243 chr3L 22099667 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105910 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-703 1261 chr3L 22130488 22130512 chr3L 22130645 22130676 5 164 2.0 1.5 1.8 1.8 188 chr3L 22130488 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130676 intergenic not near genes chr3L_5_22130001 chr3L_22130001 RAL-703 1262 chr3L 22328060 22328091 chr3L 22328157 22328207 10 104 1.5 1.5 1.5 4.0 147 chr3L 22328060 intron Ten-m - chr3L 22328134 intron Ten-m - chr3L 22328207 intron Ten-m - chr3L_10_22325001 chr3L_22325001 RAL-703 1263 chr3L 22447179 22447230 chr3L 22447290 22447327 7 105 3.0 3.0 3.0 1.8 148 chr3L 22447179 intergenic not near genes chr3L 22447253 intergenic not near genes chr3L 22447327 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-703 1264 chr3L 22555792 22555802 chr3L 22563254 22563264 blood 5 7468 2.0 3.5 2.8 1.3 7472 chr3L 22555792 intergenic not near genes chr3L 22559528 intergenic not near genes chr3L 22563264 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-703 1265 chr3L 22570405 22570449 chr3L 22570569 22570613 8 162 4.5 3.0 3.8 1.7 208 chr3L 22570405 intergenic not near genes chr3L 22570509 intergenic not near genes chr3L 22570613 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-703 1266 chr3L 22577611 22577642 chr3L 22582410 22582450 Doc 6 4802 5.5 5.5 5.5 0.9 4839 chr3L 22577611 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582450 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-703 1267 chr3L 22617169 22617216 chr3L 22624640 22624661 blood 9 7467 3.5 4.0 3.8 1.9 7492 chr3L 22617169 intron CG14459 - chr3L 22620915 intron CG14459 - chr3L 22624661 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-703 1268 chr3L 22674415 22674454 chr3L 22674513 22674550 11 97 4.5 6.5 5.5 1.7 135 chr3L 22674415 intron CG14457 + chr3L 22674482 intron CG14457 + chr3L 22674550 intron CG14457 + chr3L_11_22670001 chr3L_22670001 RAL-703 1269 chr3L 22761372 22761416 chr3L 22766826 22766870 Ivk 10 5448 2.5 6.0 4.2 1.9 5498 chr3L 22761372 intron SPoCk + chr3L 22764121 intron SPoCk + chr3L 22766870 intron SPoCk + chr3L_10_22760001 chr3L_22760001 RAL-703 1270 chr3L 22821925 22821949 chr3L 22822026 22822050 4 101 1.0 3.5 2.2 1.2 125 chr3L 22821925 intron jim - chr3L 22821988 intron jim - chr3L 22822050 intron jim - chr3L_4_22820001 chr3L_22820001 RAL-703 1271 chr3L 22838568 22838615 chr3L 22838666 22838711 9 98 6.0 4.0 5.0 1.5 143 chr3L 22838568 intergenic CG11226 + chr3L 22838640 intergenic CG11226 + chr3L 22838711 intergenic not near genes chr3L_9_22835001 chr3L_22835001 RAL-703 1272 chr3L 22853444 22853723 chr3L 22853549 22853814 9 104 3.5 1.5 2.5 2.6 370 chr3L 22853444 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853629 5` UTR CR43426 + chr3L 22853814 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-703 1273 chr3L 22894242 22894246 chr3L 22894349 22894356 4 111 3.0 4.5 3.8 0.8 114 chr3L 22894242 intergenic slif + chr3L 22894299 intergenic slif + chr3L 22894356 intergenic not near genes chr3L_4_22890001 chr3L_22890001 RAL-703 1274 chr3L 9307795 9307796 chr3L 22908066 22908066 5 13600270 12.5 8.5 10.5 0.4 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_5_16105001 chr3L_16105001 RAL-703 1275 chr3L 9307795 9307796 chr3L 22908067 22908067 7 13600271 12.5 8.5 10.5 0.6 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_7_16105001 chr3L_16105001 RAL-703 1276 chr3L 22909012 22909048 chr3L 22909123 22909159 9 111 3.5 8.0 5.8 1.3 147 chr3L 22909012 intergenic CR45661 + chr3L 22909086 intergenic CR45661 + chr3L 22909159 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-703 1277 chr3L 22924931 22924965 chr3L 22925023 22925027 6 89 2.5 1.0 1.8 2.1 96 chr3L 22924931 intergenic not near genes chr3L 22924979 intergenic not near genes chr3L 22925027 intergenic not near genes chr3L_6_22920001 chr3L_22920001 RAL-703 1278 chr3L 22974349 22974361 chr3L 22974446 22974459 4 98 4.5 2.0 3.2 1.0 110 chr3L 22974349 intergenic not near genes chr3L 22974404 intergenic not near genes chr3L 22974459 intergenic not near genes chr3L_4_22970001 chr3L_22970001 RAL-703 1279 chr3L 22975238 22975272 chr3L 22975340 22975368 6 105 2.5 1.5 2.0 2.0 130 chr3L 22975238 intergenic not near genes chr3L 22975303 intergenic not near genes chr3L 22975368 intergenic not near genes chr3L_6_22975001 chr3L_22975001 RAL-703 1280 chr3L 22989844 22989890 chr3L 22996836 22996878 297 4 6990 2.5 2.5 2.5 1.1 7034 chr3L 22989844 intergenic not near genes chr3L 22993361 intergenic not near genes chr3L 22996878 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-703 1281 chr3L 23004896 23004940 chr3L 23005242 23005286 8 344 1.0 7.0 4.0 1.6 390 chr3L 23004896 intron nrm + chr3L 23005091 intron nrm + chr3L 23005286 intron nrm + chr3L_8_23005001 chr3L_23005001 RAL-703 1282 chr3L 23096054 23096073 chr3L 23096157 23096176 7 103 3.0 1.0 2.0 2.3 122 chr3L 23096054 intergenic not near genes chr3L 23096115 intergenic not near genes chr3L 23096176 intergenic not near genes chr3L_7_23095001 chr3L_23095001 RAL-703 1283 chr3L 23251946 23251968 chr3L 23252067 23252094 4 128 3.0 0.5 1.8 1.4 148 chr3L 23251946 intron nAChRalpha4 + chr3L 23252020 intron nAChRalpha4 + chr3L 23252094 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-703 1284 chr3L 23288924 23288962 chr3L 23289069 23289108 7 144 1.5 3.5 2.5 2.0 184 chr3L 23288924 intergenic not near genes chr3L 23289016 intergenic not near genes chr3L 23289108 intergenic not near genes chr3L_7_23285001 chr3L_23285001 RAL-703 1285 chr3L 23665515 23665529 chr3L 23665625 23665639 gypsy8 8 108 15.5 16.0 15.8 0.5 124 chr3L 23665515 intron AGO3 + chr3L 23665577 intron AGO3 + chr3L 23665639 intron AGO3 + chr3L_8_23665001 chr3L_23665001 RAL-703 1286 chr3L 24012393 24012438 chr3L 24020754 24020780 roo 6 8355 0.0 1.0 0.5 4.0 8387 chr3L 24012393 intergenic not near genes chr3L 24016586 intergenic not near genes chr3L 24020780 intergenic not near genes chr3L_6_24015001 chr3L_24015001 RAL-703 1287 chr3L 24036768 24036807 chr3L 24036878 24036902 6 105 2.0 3.0 2.5 1.7 134 chr3L 24036768 intergenic not near genes chr3L 24036835 intergenic not near genes chr3L 24036902 intergenic not near genes chr3L_6_24035001 chr3L_24035001 RAL-703 1288 chr3L 24289911 24289961 chr3L 24290008 24290056 8 92 6.5 3.5 5.0 1.3 145 chr3L 24289911 intron Snap25 + chr3L 24289984 intron Snap25 + chr3L 24290056 intron Snap25 + chr3L_8_24285001 chr3L_24285001 RAL-703 1289 chr3L 24324284 24324323 chr3L 24324398 24324425 4 112 1.5 1.5 1.5 1.6 141 chr3L 24324284 intergenic not near genes chr3L 24324354 intergenic not near genes chr3L 24324425 intergenic nvd + chr3L_4_24320001 chr3L_24320001 RAL-703 1290 chr3L 24363224 24363270 chr3L 24363322 24363350 10 90 3.5 8.5 6.0 1.4 126 chr3L 24363224 intron nvd + chr3L 24363287 intron nvd + chr3L 24363350 intron nvd + chr3L_10_24360001 chr3L_24360001 RAL-703 1291 chr3L 25464016 25464095 chr3L 25464108 25464192 4 95 3.5 2.0 2.8 1.1 176 chr3L 25464016 intergenic not near genes chr3L 25464104 intergenic not near genes chr3L 25464192 intergenic not near genes chr3L_4_25460001 chr3L_25460001 RAL-703 1292 chr3L 25513557 25513608 chr3L 25513655 25513707 7 93 1.5 1.0 1.2 3.2 150 chr3L 25513557 intron CG41343 - chr3L 25513632 intron CG41343 - chr3L 25513707 intron CG41343 - chr3L_7_25510001 chr3L_25510001 RAL-703 1293 chr3L 25886868 25886879 chr3L 25887291 25887301 4 422 5.5 3.0 4.2 0.8 433 chr3L 25886868 intron CG40178 - chr3L 25887084 intron CG40178 - chr3L 25887301 intron CG40178 - chr3L_4_25885001 chr3L_25885001 RAL-703 1294 chr3L 26009405 26009451 chr3L 26009516 26009546 4 102 2.5 0.5 1.5 1.6 141 chr3L 26009405 intron CG40178 - chr3L 26009476 intron CG40178 - chr3L 26009546 intron CG40178 - chr3L_4_26005001 chr3L_26005001 RAL-703 1295 chr3L 26694931 26694952 chr3L 26695006 26695052 5 91 1.0 3.0 2.0 1.7 121 chr3L 26694931 intergenic not near genes chr3L 26694992 intergenic not near genes chr3L 26695052 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-703 1296 chr3L 27167945 27167974 chr3L 27168082 27168087 5 129 0.5 4.0 2.2 1.6 142 chr3L 27167945 intergenic not near genes chr3L 27168016 intergenic not near genes chr3L 27168087 intergenic not near genes chr3L_5_27165001 chr3L_27165001 RAL-703 1297 chr3R 1850868 1850906 chr3R 1853514 1853553 INE-1 6 2646 0.0 2.5 1.2 2.7 2685 chr3R 1850868 intron CG42623 + chr3R 1852210 intron CG42623 + chr3R 1853553 intron CG42623 + chr3R_6_1850001 chr3R_1850001 RAL-703 1298 chr3R 1939038 1939082 chr3R 1939150 1939159 4 104 0.5 2.5 1.5 1.6 121 chr3R 1939038 intergenic not near genes chr3R 1939098 intergenic not near genes chr3R 1939159 intergenic not near genes chr3R_4_1935001 chr3R_1935001 RAL-703 1299 chr3R 2534142 2534153 chr3R 2541711 2541741 4 7579 12.5 10.5 11.5 0.3 7599 chr3R 2534142 intergenic not near genes chr3R 2537942 intergenic not near genes chr3R 2541741 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-703 1300 chr3R 3877481 3877502 chr3R 3877616 3877646 5 148 2.5 5.0 3.8 1.0 165 chr3R 3877481 intergenic not near genes chr3R 3877564 intergenic not near genes chr3R 3877646 intergenic not near genes chr3R_5_3875001 chr3R_3875001 RAL-703 1301 chr3R 4206051 4206094 chr3R 4211644 4211688 mdg3 8 5590 4.5 1.5 3.0 2.0 5637 chr3R 4206051 intron CG14636 - chr3R 4208870 intron CG14636 - chr3R 4211688 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-703 1302 chr3R 4408393 4408434 chr3R 4412716 4412758 Juan 9 4324 5.5 3.0 4.2 1.7 4365 chr3R 4408393 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412758 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-703 1303 chr3R 4484411 4484455 chr3R 4484517 4484561 6 105 1.5 4.0 2.8 1.6 150 chr3R 4484411 intergenic CG14651 + chr3R 4484486 intergenic CG14651 + chr3R 4484561 intergenic CG14651 +,Fip1 + chr3R_6_4480001 chr3R_4480001 RAL-703 1304 chr3R 4628907 4628948 chr3R 4629551 4629596 9 644 3.0 2.5 2.8 2.4 689 chr3R 4628907 intron 5-HT2A + chr3R 4629252 intron 5-HT2A + chr3R 4629596 intron 5-HT2A + chr3R_9_4625001 chr3R_4625001 RAL-703 1305 chr3R 4644834 4644875 chr3R 4644927 4644952 10 92 6.0 6.5 6.2 1.4 118 chr3R 4644834 exon Dip2 - chr3R 4644893 exon Dip2 - chr3R 4644952 exon Dip2 - chr3R_10_4640001 chr3R_4640001 RAL-703 1306 chr3R 4680713 4680741 chr3R 4680812 4680840 4 98 2.5 2.5 2.5 1.1 127 chr3R 4680713 intron CG43427 + chr3R 4680776 intron CG43427 + chr3R 4680840 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-703 1307 chr3R 4733668 4733705 chr3R 4733811 4733849 6 143 0.5 1.0 0.8 3.3 181 chr3R 4733668 intergenic not near genes chr3R 4733758 intergenic not near genes chr3R 4733849 intergenic not near genes chr3R_6_4730001 chr3R_4730001 RAL-703 1308 chr3R 4753225 4753272 chr3R 4757548 4757565 F-element 8 4317 6.5 6.0 6.2 1.1 4340 chr3R 4753225 intron,intron atms +,CG44098 - chr3R 4755395 intron,intron atms +,CG44098 - chr3R 4757565 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-703 1309 chr3R 4796106 4796148 chr3R 4796247 4796277 11 138 3.0 5.0 4.0 2.2 171 chr3R 4796106 intron ctrip - chr3R 4796192 intron ctrip - chr3R 4796277 intron ctrip - chr3R_11_4795001 chr3R_4795001 RAL-703 1310 chr3R 4861558 4861571 chr3R 4861653 4861671 6 96 7.0 3.5 5.2 1.0 113 chr3R 4861558 intron opa + chr3R 4861614 intron opa + chr3R 4861671 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-703 1311 chr3R 4887475 4887510 chr3R 4894856 4894906 rover 7 7395 1.0 2.5 1.8 2.5 7431 chr3R 4887475 intergenic not near genes chr3R 4891190 intergenic not near genes chr3R 4894906 intergenic not near genes chr3R_7_4890001 chr3R_4890001 RAL-703 1312 chr3R 4922338 4922343 chr3R 4922437 4922442 4 99 4.5 4.0 4.2 0.8 104 chr3R 4922338 intron Cdep + chr3R 4922390 intron Cdep + chr3R 4922442 intron Cdep + chr3R_4_4920001 chr3R_4920001 RAL-703 1313 chr3R 4943605 4943614 chr3R 4943728 4943737 4 124 3.5 3.0 3.2 1.0 132 chr3R 4943605 intron Cdep + chr3R 4943671 intron Cdep + chr3R 4943737 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-703 1314 chr3R 4966012 4966034 chr3R 4966106 4966135 6 104 4.0 2.0 3.0 1.5 123 chr3R 4966012 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966135 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-703 1315 chr3R 5045836 5045871 chr3R 5052955 5052990 HMS-Beagle 6 7118 2.5 3.0 2.8 1.6 7154 chr3R 5045836 intron CR43635 - chr3R 5049413 intergenic not near genes chr3R 5052990 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-703 1316 chr3R 5067965 5068012 chr3R 5073502 5073549 mdg3 8 5532 1.5 3.0 2.2 2.5 5584 chr3R 5067965 intergenic not near genes chr3R 5070757 intergenic not near genes chr3R 5073549 intergenic not near genes chr3R_8_5070001 chr3R_5070001 RAL-703 1317 chr3R 5088665 5088703 chr3R 5088770 5088806 11 100 4.5 4.0 4.2 2.1 141 chr3R 5088665 intergenic not near genes chr3R 5088736 intergenic not near genes chr3R 5088806 intergenic not near genes chr3R_11_5085001 chr3R_5085001 RAL-703 1318 chr3R 5107208 5107235 chr3R 5107368 5107421 10 175 3.0 3.0 3.0 2.5 213 chr3R 5107208 intergenic not near genes chr3R 5107314 intergenic not near genes chr3R 5107421 intergenic not near genes chr3R_10_5105001 chr3R_5105001 RAL-703 1319 chr3R 5247159 5247188 chr3R 5247248 5247287 5 95 5.0 3.5 4.2 1.0 128 chr3R 5247159 intron CG12163 - chr3R 5247223 intron CG12163 - chr3R 5247287 intron CG12163 - chr3R_5_5245001 chr3R_5245001 RAL-703 1320 chr3R 5271153 5271190 chr3R 5271248 5271288 5 92 1.0 2.0 1.5 2.0 135 chr3R 5271153 intergenic not near genes chr3R 5271220 intergenic not near genes chr3R 5271288 intergenic not near genes chr3R_5_5270001 chr3R_5270001 RAL-703 1321 chr3R 5278069 5278121 chr3R 5278168 5278222 13 96 1.5 0.5 1.0 6.5 153 chr3R 5278069 intron mtd - chr3R 5278146 intron mtd - chr3R 5278222 intron mtd - chr3R_13_5275001 chr3R_5275001 RAL-703 1322 chr3R 5287422 5287469 chr3R 5287524 5287537 11 91 5.5 7.5 6.5 1.5 115 chr3R 5287422 intron mtd - chr3R 5287480 intron mtd - chr3R 5287537 intron mtd - chr3R_11_5285001 chr3R_5285001 RAL-703 1323 chr3R 5338391 5338428 chr3R 5343571 5343606 Rt1c 8 5187 4.0 5.5 4.8 1.4 5215 chr3R 5338391 intron mtd - chr3R 5340998 intron mtd - chr3R 5343606 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-703 1324 chr3R 5400488 5400496 chr3R 5400589 5400599 4 102 4.0 2.0 3.0 1.0 111 chr3R 5400488 intergenic CG2663 - chr3R 5400544 intergenic CG2663 - chr3R 5400599 3` UTR CG2663 - chr3R_4_5400001 chr3R_5400001 RAL-703 1325 chr3R 5400497 5400541 chr3R 5400588 5400621 10 94 0.5 1.5 1.0 5.0 124 chr3R 5400497 intergenic CG2663 - chr3R 5400559 intergenic CG2663 - chr3R 5400621 3` UTR CG2663 - chr3R_10_5400001 chr3R_5400001 RAL-703 1326 chr3R 5445942 5445980 chr3R 5452420 5452460 Burdock 4 6480 4.0 3.0 3.5 0.9 6518 chr3R 5445942 intron CG14669 + chr3R 5449201 intron CG14669 + chr3R 5452460 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-703 1327 chr3R 5680796 5680817 chr3R 5680899 5680920 5 103 1.0 4.5 2.8 1.3 124 chr3R 5680796 3` UTR Rab23 - chr3R 5680858 3` UTR Rab23 - chr3R 5680920 3` UTR Rab23 - chr3R_5_5680001 chr3R_5680001 RAL-703 1328 chr3R 5688760 5688813 chr3R 5688901 5688954 14 135 2.5 2.5 2.5 4.0 194 chr3R 5688760 intron plx + chr3R 5688857 intron plx + chr3R 5688954 intron plx + chr3R_14_5685001 chr3R_5685001 RAL-703 1329 chr3R 5745999 5746028 chr3R 5746260 5746288 pogo 7 258 4.0 3.0 3.5 1.6 289 chr3R 5745999 3` UTR Madm + chr3R 5746144 3` UTR Madm + chr3R 5746288 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-703 1330 chr3R 5746997 5747037 chr3R 5753207 5753246 diver 10 6208 2.0 4.0 3.0 2.5 6249 chr3R 5746997 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753246 intergenic CG2091 - chr3R_10_5750001 chr3R_5750001 RAL-703 1331 chr3R 5809102 5809125 chr3R 5809371 5809379 pogo 4 266 6.0 2.5 4.2 0.8 277 chr3R 5809102 3` UTR CG11000 + chr3R 5809240 3` UTR CG11000 + chr3R 5809379 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-703 1332 chr3R 5822362 5822404 chr3R 5823549 5823591 1360 13 1184 4.0 4.0 4.0 2.6 1229 chr3R 5822362 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823591 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-703 1333 chr3R 5927560 5927582 chr3R 5927799 5927840 pogo 4 253 4.5 2.5 3.5 0.9 280 chr3R 5927560 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927840 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-703 1334 chr3R 5945297 5945308 chr3R 5945378 5945393 6 90 0.5 4.5 2.5 1.7 96 chr3R 5945297 intron CG34113 - chr3R 5945345 intron CG34113 - chr3R 5945393 intron CG34113 - chr3R_6_5945001 chr3R_5945001 RAL-703 1335 chr3R 6015953 6015993 chr3R 6024441 6024477 Tirant 10 8485 2.0 1.0 1.5 4.0 8524 chr3R 6015953 intergenic not near genes chr3R 6020215 intergenic not near genes chr3R 6024477 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-703 1336 chr3R 6042558 6042604 chr3R 6042675 6042705 8 113 4.5 2.0 3.2 1.9 147 chr3R 6042558 intergenic not near genes chr3R 6042632 intergenic not near genes chr3R 6042705 intergenic not near genes chr3R_8_6040001 chr3R_6040001 RAL-703 1337 chr3R 6117394 6117426 chr3R 6117535 6117548 9 136 3.5 1.5 2.5 2.6 154 chr3R 6117394 intergenic not near genes chr3R 6117471 intergenic not near genes chr3R 6117548 intergenic not near genes chr3R_9_6115001 chr3R_6115001 RAL-703 1338 chr3R 6206270 6206318 chr3R 6206506 6206553 BS 10 232 1.5 2.0 1.8 3.6 283 chr3R 6206270 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206553 intron Osi24 + chr3R_10_6205001 chr3R_6205001 RAL-703 1339 chr3R 6241329 6241340 chr3R 6241426 6241437 4 97 4.5 3.0 3.8 0.8 108 chr3R 6241329 intergenic not near genes chr3R 6241383 intergenic not near genes chr3R 6241437 intergenic not near genes chr3R_4_6240001 chr3R_6240001 RAL-703 1340 chr3R 6428802 6428828 chr3R 6428924 6428950 8 118 2.5 4.5 3.5 1.8 148 chr3R 6428802 intron gpp + chr3R 6428876 intron gpp + chr3R 6428950 intron gpp + chr3R_8_6425001 chr3R_6425001 RAL-703 1341 chr3R 6510012 6510051 chr3R 6515113 6515151 jockey 5 5101 0.5 2.0 1.2 2.3 5139 chr3R 6510012 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515151 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-703 1342 chr3R 6737504 6737517 chr3R 6739289 6739323 Doc 5 1797 4.0 2.5 3.2 1.2 1819 chr3R 6737504 intron pb - chr3R 6738414 intron pb - chr3R 6739323 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-703 1343 chr3R 6773736 6773786 chr3R 6773836 6773888 11 97 1.0 4.0 2.5 3.1 152 chr3R 6773736 intron CR42721 + chr3R 6773812 intron CR42721 + chr3R 6773888 intron CR42721 + chr3R_11_6770001 chr3R_6770001 RAL-703 1344 chr3R 6816692 6816730 chr3R 6817006 6817044 6 315 16.0 14.0 15.0 0.4 352 chr3R 6816692 intergenic CR42651 - chr3R 6816868 intergenic not near genes chr3R 6817044 intergenic not near genes chr3R_6_6815001 chr3R_6815001 RAL-703 1345 chr3R 6828009 6828038 chr3R 6828100 6828134 6 94 1.5 5.0 3.2 1.4 125 chr3R 6828009 intron Scr - chr3R 6828072 intron Scr - chr3R 6828134 intron Scr - chr3R_6_6825001 chr3R_6825001 RAL-703 1346 chr3R 6831709 6831759 chr3R 6831862 6831911 7 148 0.5 3.0 1.8 2.5 202 chr3R 6831709 intron Scr - chr3R 6831810 intron Scr - chr3R 6831911 intron Scr - chr3R_7_6830001 chr3R_6830001 RAL-703 1347 chr3R 6856383 6856389 chr3R 6856511 6856520 4 133 4.0 3.5 3.8 0.8 137 chr3R 6856383 intergenic not near genes chr3R 6856452 intergenic not near genes chr3R 6856520 intergenic not near genes chr3R_4_6855001 chr3R_6855001 RAL-703 1348 chr3R 6978876 6978909 chr3R 6978967 6979014 5 101 0.5 1.0 0.8 2.8 138 chr3R 6978876 intron Antp - chr3R 6978945 intron Antp - chr3R 6979014 intron Antp - chr3R_5_6975001 chr3R_6975001 RAL-703 1349 chr3R 6990445 6990493 chr3R 6990555 6990603 7 109 0.5 2.0 1.2 3.2 158 chr3R 6990445 intron Antp - chr3R 6990524 intron Antp - chr3R 6990603 intron Antp - chr3R_7_6990001 chr3R_6990001 RAL-703 1350 chr3R 6991165 6991203 chr3R 6991254 6991293 11 94 2.0 1.0 1.5 4.4 128 chr3R 6991165 intron Antp - chr3R 6991229 intron Antp - chr3R 6991293 intron Antp - chr3R_11_6990001 chr3R_6990001 RAL-703 1351 chr3R 7026858 7026883 chr3R 7026939 7026977 8 95 3.5 3.5 3.5 1.8 119 chr3R 7026858 intergenic not near genes chr3R 7026918 intergenic not near genes chr3R 7026977 intergenic not near genes chr3R_8_7025001 chr3R_7025001 RAL-703 1352 chr3R 7036750 7036761 chr3R 7036849 7036860 5 99 2.5 2.5 2.5 1.4 110 chr3R 7036750 intergenic not near genes chr3R 7036805 intergenic not near genes chr3R 7036860 intergenic not near genes chr3R_5_7035001 chr3R_7035001 RAL-703 1353 chr3R 7092776 7092805 chr3R 7093358 7093389 5 583 3.5 6.0 4.8 0.9 613 chr3R 7092776 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093389 3` UTR CR43685 - chr3R_5_7090001 chr3R_7090001 RAL-703 1354 chr3R 7126501 7126517 chr3R 7126602 7126632 5 112 4.0 2.5 3.2 1.2 131 chr3R 7126501 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126632 3` UTR CG10068 - chr3R_5_7125001 chr3R_7125001 RAL-703 1355 chr3R 7173673 7173705 chr3R 7173763 7173803 7 96 1.0 2.0 1.5 2.8 130 chr3R 7173673 intron sas + chr3R 7173738 intron sas + chr3R 7173803 intron sas + chr3R_7_7170001 chr3R_7170001 RAL-703 1356 chr3R 7187723 7187736 chr3R 7187831 7187844 4 105 2.5 6.0 4.2 0.8 121 chr3R 7187723 intron lap + chr3R 7187784 intron lap + chr3R 7187844 intron lap + chr3R_4_7185001 chr3R_7185001 RAL-703 1357 chr3R 7279573 7279624 chr3R 7279713 7279763 7 131 1.5 1.5 1.5 2.8 190 chr3R 7279573 intron rn - chr3R 7279668 intron rn - chr3R 7279763 intron rn - chr3R_7_7275001 chr3R_7275001 RAL-703 1358 chr3R 7385573 7385583 chr3R 7385663 7385671 5 92 6.0 7.0 6.5 0.7 98 chr3R 7385573 intergenic not near genes chr3R 7385622 intergenic not near genes chr3R 7385671 intergenic not near genes chr3R_5_7385001 chr3R_7385001 RAL-703 1359 chr3R 7385589 7385617 chr3R 7385656 7385688 5 70 5.0 6.5 5.8 0.7 99 chr3R 7385589 intergenic not near genes chr3R 7385638 intergenic not near genes chr3R 7385688 intergenic not near genes chr3R_5_7385001 chr3R_7385001 RAL-703 1360 chr3R 7447978 7448006 chr3R 7448076 7448103 9 97 4.0 6.5 5.2 1.5 125 chr3R 7447978 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448103 intergenic not near genes chr3R_9_7445001 chr3R_7445001 RAL-703 1361 chr3R 7548587 7548633 chr3R 7548685 7548731 11 97 2.0 3.0 2.5 3.1 144 chr3R 7548587 intron alpha-Est1 - chr3R 7548659 intron alpha-Est1 - chr3R 7548731 intron alpha-Est1 - chr3R_11_7545001 chr3R_7545001 RAL-703 1362 chr3R 7556913 7556966 chr3R 7557026 7557078 8 110 0.5 1.0 0.8 4.4 165 chr3R 7556913 intergenic not near genes chr3R 7556996 intergenic not near genes chr3R 7557078 intergenic not near genes chr3R_8_7555001 chr3R_7555001 RAL-703 1363 chr3R 7635637 7635665 chr3R 7635736 7635768 6 101 2.5 1.5 2.0 2.0 131 chr3R 7635637 intron CG34127 - chr3R 7635702 intron CG34127 - chr3R 7635768 intron CG34127 - chr3R_6_7635001 chr3R_7635001 RAL-703 1364 chr3R 7677894 7677946 chr3R 7678027 7678059 13 127 0.5 3.0 1.8 4.6 165 chr3R 7677894 intron Nlg1 + chr3R 7677976 intron Nlg1 + chr3R 7678059 intron Nlg1 + chr3R_13_7675001 chr3R_7675001 RAL-703 1365 chr3R 7729451 7729492 chr3R 7737409 7737448 Stalker2 10 7955 5.0 3.5 4.2 1.9 7997 chr3R 7729451 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737448 intergenic not near genes chr3R_10_7730001 chr3R_7730001 RAL-703 1366 chr3R 7953659 7953690 chr3R 7953763 7953796 4 104 2.0 1.5 1.8 1.4 137 chr3R 7953659 intron dsx - chr3R 7953728 intron dsx - chr3R 7953796 intron dsx - chr3R_4_7950001 chr3R_7950001 RAL-703 1367 chr3R 7973300 7973335 chr3R 7974381 7974417 1360 5 1076 8.0 3.0 5.5 0.8 1117 chr3R 7973300 intergenic not near genes chr3R 7973858 intergenic not near genes chr3R 7974417 3` UTR CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-703 1368 chr3R 8094401 8094439 chr3R 8099717 8099751 Transpac 4 5320 1.0 2.5 1.8 1.4 5350 chr3R 8094401 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099751 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-703 1369 chr3R 8158009 8158039 chr3R 8158111 8158139 6 100 3.0 1.5 2.2 1.9 130 chr3R 8158009 intron grn - chr3R 8158074 intron grn - chr3R 8158139 intron grn - chr3R_6_8155001 chr3R_8155001 RAL-703 1370 chr3R 8207555 8207585 chr3R 8208418 8208450 F-element 4 860 3.0 4.5 3.8 0.8 895 chr3R 8207555 intergenic not near genes chr3R 8208002 intergenic not near genes chr3R 8208450 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-703 1371 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568289 19.0 10.5 14.8 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-703 1372 chr3R 8391185 8391210 chr3R 8391285 8391313 4 96 3.0 6.0 4.5 0.7 128 chr3R 8391185 intron CG45263 - chr3R 8391249 intron CG45263 - chr3R 8391313 exon CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-703 1373 chr3R 8403010 8403041 chr3R 8412171 8412207 roo 8 9169 1.5 3.0 2.2 2.5 9197 chr3R 8403010 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-703 1374 chr3R 8412405 8412456 chr3R 8412550 8412601 10 138 4.0 2.0 3.0 2.5 196 chr3R 8412405 intron CG45263 - chr3R 8412503 intron CG45263 - chr3R 8412601 intron CG45263 - chr3R_10_8410001 chr3R_8410001 RAL-703 1375 chr3R 8478065 8478110 chr3R 8478164 8478209 9 99 1.5 2.0 1.8 3.2 144 chr3R 8478065 intergenic CG45263 - chr3R 8478137 intergenic not near genes chr3R 8478209 intergenic not near genes chr3R_9_8475001 chr3R_8475001 RAL-703 1376 chr3R 8570470 8570509 chr3R 8575126 8575164 HMS-Beagle 8 4653 1.0 3.0 2.0 2.7 4694 chr3R 8570470 intergenic not near genes chr3R 8572817 intergenic not near genes chr3R 8575164 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-703 1377 chr3R 8601765 8601798 chr3R 8610924 8610970 roo 4 9168 2.0 2.0 2.0 1.3 9205 chr3R 8601765 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610970 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-703 1378 chr3R 8707360 8707383 chr3R 8709811 8709844 jockey 7 2458 5.5 4.5 5.0 1.2 2484 chr3R 8707360 intergenic not near genes chr3R 8708602 intergenic not near genes chr3R 8709844 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-703 1379 chr3R 8744835 8744862 chr3R 8744922 8744961 8 95 5.5 4.5 5.0 1.3 126 chr3R 8744835 intron CG9801 - chr3R 8744898 intron CG9801 - chr3R 8744961 intron CG9801 - chr3R_8_8740001 chr3R_8740001 RAL-703 1380 chr3R 8917869 8917898 chr3R 8917969 8917998 8 95 4.5 0.5 2.5 2.3 129 chr3R 8917869 intron pyd - chr3R 8917934 intron pyd - chr3R 8917998 intron pyd - chr3R_8_8915001 chr3R_8915001 RAL-703 1381 chr3R 8940110 8940145 chr3R 8940220 8940255 8 110 4.0 3.0 3.5 1.8 145 chr3R 8940110 intron skap + chr3R 8940182 intron skap + chr3R 8940255 intron skap + chr3R_8_8940001 chr3R_8940001 RAL-703 1382 chr3R 9036360 9036404 chr3R 9036458 9036484 8 95 1.0 1.5 1.2 3.6 124 chr3R 9036360 intron neur - chr3R 9036422 intron neur - chr3R 9036484 intron neur - chr3R_8_9035001 chr3R_9035001 RAL-703 1383 chr3R 9066631 9066683 chr3R 9066755 9066806 10 123 3.5 2.0 2.8 2.6 175 chr3R 9066631 3` UTR pum - chr3R 9066718 3` UTR pum - chr3R 9066806 3` UTR pum - chr3R_10_9065001 chr3R_9065001 RAL-703 1384 chr3R 9082028 9082059 chr3R 9082140 9082172 4 107 2.5 2.5 2.5 1.1 144 chr3R 9082028 intron pum - chr3R 9082100 intron pum - chr3R 9082172 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-703 1385 chr3R 9101835 9101861 chr3R 9101953 9101971 4 113 6.0 2.5 4.2 0.8 136 chr3R 9101835 intron pum - chr3R 9101903 intron pum - chr3R 9101971 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-703 1386 chr3R 9108854 9108875 chr3R 9108948 9108971 6 95 7.5 3.0 5.2 1.0 117 chr3R 9108854 intron pum - chr3R 9108912 intron pum - chr3R 9108971 intron pum - chr3R_6_9105001 chr3R_9105001 RAL-703 1387 chr3R 9141128 9141173 chr3R 9141227 9141263 7 100 1.0 5.0 3.0 1.8 135 chr3R 9141128 intron pum - chr3R 9141196 intron pum - chr3R 9141263 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-703 1388 chr3R 9227930 9227957 chr3R 9228049 9228091 12 128 4.5 0.5 2.5 3.4 161 chr3R 9227930 intron pum - chr3R 9228010 intron pum - chr3R 9228091 intron pum - chr3R_12_9225001 chr3R_9225001 RAL-703 1389 chr3R 9278777 9278808 chr3R 9284045 9284088 Rt1a 6 5276 6.5 5.0 5.8 0.9 5311 chr3R 9278777 intergenic not near genes chr3R 9281432 intergenic not near genes chr3R 9284088 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-703 1390 chr3R 9284864 9284906 chr3R 9284968 9285009 5 101 0.5 3.5 2.0 1.7 145 chr3R 9284864 intergenic not near genes chr3R 9284936 intergenic not near genes chr3R 9285009 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-703 1391 chr3R 9382817 9382845 chr3R 9382941 9382989 12 140 0.5 1.5 1.0 6.0 172 chr3R 9382817 intron FER - chr3R 9382903 intron FER - chr3R 9382989 intron FER - chr3R_12_9380001 chr3R_9380001 RAL-703 1392 chr3R 9442046 9442060 chr3R 9442151 9442165 4 104 9.0 0.5 4.8 0.7 119 chr3R 9442046 intron ps + chr3R 9442106 intron ps + chr3R 9442165 intron ps + chr3R_4_9440001 chr3R_9440001 RAL-703 1393 chr3R 9853163 9853205 chr3R 9853292 9853332 5 121 4.0 6.5 5.2 0.8 169 chr3R 9853163 intron Teh1 - chr3R 9853248 intron Teh1 - chr3R 9853332 intron Teh1 - chr3R_5_9850001 chr3R_9850001 RAL-703 1394 chr3R 9859984 9859997 chr3R 9860118 9860131 4 134 3.0 2.0 2.5 1.1 147 chr3R 9859984 intron Teh1 - chr3R 9860058 intron Teh1 - chr3R 9860131 intron Teh1 - chr3R_4_9860001 chr3R_9860001 RAL-703 1395 chr3R 9878005 9878020 chr3R 9878108 9878128 8 105 3.0 1.5 2.2 2.5 123 chr3R 9878005 intron,intron Glut4EF +,CR45029 - chr3R 9878066 intron,intron Glut4EF +,CR45029 - chr3R 9878128 intron,intron Glut4EF +,CR45029 - chr3R_8_9875001 chr3R_9875001 RAL-703 1396 chr3R 9891448 9891470 chr3R 9891608 9891613 5 155 1.0 1.0 1.0 2.5 165 chr3R 9891448 intron Glut4EF + chr3R 9891530 intron Glut4EF + chr3R 9891613 intron Glut4EF + chr3R_5_9890001 chr3R_9890001 RAL-703 1397 chr3R 9898786 9898818 chr3R 9898896 9898899 6 106 1.5 3.5 2.5 1.7 113 chr3R 9898786 intron Glut4EF + chr3R 9898842 intron Glut4EF + chr3R 9898899 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-703 1398 chr3R 10073755 10073795 chr3R 10073884 10073910 9 123 3.0 2.5 2.8 2.4 155 chr3R 10073755 3` UTR nerfin-2 + chr3R 10073832 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_9_10070001 chr3R_10070001 RAL-703 1399 chr3R 10133488 10133524 chr3R 10133585 10133614 16 95 4.0 4.5 4.2 3.1 126 chr3R 10133488 intron tws - chr3R 10133551 intron tws - chr3R 10133614 intron tws - chr3R_16_10130001 chr3R_10130001 RAL-703 1400 chr3R 10151008 10151033 chr3R 10151077 10151113 7 86 4.0 2.5 3.2 1.7 105 chr3R 10151008 intron Invadolysin + chr3R 10151060 intron Invadolysin + chr3R 10151113 intron Invadolysin + chr3R_7_10150001 chr3R_10150001 RAL-703 1401 chr3R 10151715 10151758 chr3R 10152011 10152054 7 289 4.5 2.5 3.5 1.6 339 chr3R 10151715 intron Invadolysin + chr3R 10151884 intron Invadolysin + chr3R 10152054 intron Invadolysin + chr3R_7_10150001 chr3R_10150001 RAL-703 1402 chr3R 10231765 10231813 chr3R 10237362 10237407 mdg3 8 5596 1.0 2.0 1.5 3.2 5642 chr3R 10231765 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237407 intron CG42795 + chr3R_8_10230001 chr3R_10230001 RAL-703 1403 chr3R 10275557 10275580 chr3R 10275654 10275677 5 97 1.0 5.5 3.2 1.2 120 chr3R 10275557 intron CG43143 + chr3R 10275617 intron CG43143 + chr3R 10275677 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-703 1404 chr3R 10306954 10307005 chr3R 10312193 10312244 13 5242 19.0 14.0 16.5 0.7 5290 chr3R 10306954 exon CG43143 + chr3R 10309599 exon CG6293 - chr3R 10312244 3` UTR Bruce - chr3R_13_10305001 chr3R_10305001 RAL-703 1405 chr3R 10403037 10403051 chr3R 10403138 10403152 5 100 0.0 3.5 1.8 1.8 115 chr3R 10403037 3` UTR CG6325 - chr3R 10403094 3` UTR CG6325 - chr3R 10403152 3` UTR CG6325 - chr3R_5_10400001 chr3R_10400001 RAL-703 1406 chr3R 10476213 10476242 chr3R 10476390 10476423 7 183 1.5 0.5 1.0 3.5 210 chr3R 10476213 intergenic not near genes chr3R 10476318 intergenic not near genes chr3R 10476423 intergenic not near genes chr3R_7_10475001 chr3R_10475001 RAL-703 1407 chr3R 10531864 10531891 chr3R 10531965 10531992 4 100 5.0 0.5 2.8 1.1 128 chr3R 10531864 intron hth - chr3R 10531928 intron hth - chr3R 10531992 intron hth - chr3R_4_10530001 chr3R_10530001 RAL-703 1408 chr3R 10593428 10593458 chr3R 10593514 10593563 6 89 4.5 1.5 3.0 1.5 135 chr3R 10593428 intron hth - chr3R 10593496 intron hth - chr3R 10593563 exon hth - chr3R_6_10590001 chr3R_10590001 RAL-703 1409 chr3R 10641579 10641623 chr3R 10641672 10641705 6 94 2.5 4.5 3.5 1.3 126 chr3R 10641579 5` UTR CR44018 + chr3R 10641642 5` UTR CR44018 + chr3R 10641705 5` UTR CR44018 + chr3R_6_10640001 chr3R_10640001 RAL-703 1410 chr3R 10723484 10723519 chr3R 10723587 10723621 7 103 3.5 3.0 3.2 1.7 137 chr3R 10723484 intergenic not near genes chr3R 10723552 intergenic not near genes chr3R 10723621 intergenic not near genes chr3R_7_10720001 chr3R_10720001 RAL-703 1411 chr3R 10745421 10745453 chr3R 10745526 10745545 7 102 1.0 1.0 1.0 3.5 124 chr3R 10745421 intron TkR86C - chr3R 10745483 intron TkR86C - chr3R 10745545 intron TkR86C - chr3R_7_10745001 chr3R_10745001 RAL-703 1412 chr3R 10919668 10919708 chr3R 10919765 10919806 14 97 3.5 4.5 4.0 2.8 138 chr3R 10919668 intergenic not near genes chr3R 10919737 intergenic not near genes chr3R 10919806 intergenic not near genes chr3R_14_10915001 chr3R_10915001 RAL-703 1413 chr3R 10920032 10920068 chr3R 10920128 10920165 9 94 3.5 4.0 3.8 1.9 133 chr3R 10920032 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920165 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-703 1414 chr3R 10927357 10927380 chr3R 10927620 10927643 4 263 0.0 4.0 2.0 1.3 286 chr3R 10927357 intergenic not near genes chr3R 10927500 intergenic not near genes chr3R 10927643 intergenic not near genes chr3R_4_10925001 chr3R_10925001 RAL-703 1415 chr3R 10954863 10954899 chr3R 10954963 10954981 12 102 1.0 6.5 3.8 2.5 118 chr3R 10954863 intergenic not near genes chr3R 10954922 intergenic not near genes chr3R 10954981 intergenic not near genes chr3R_12_10950001 chr3R_10950001 RAL-703 1416 chr3R 10957851 10957885 chr3R 10963255 10963294 Rt1c 4 5402 3.0 3.0 3.0 1.0 5443 chr3R 10957851 intergenic not near genes chr3R 10960572 intergenic not near genes chr3R 10963294 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-703 1417 chr3R 10971470 10971496 chr3R 10971570 10971606 6 108 2.5 2.5 2.5 1.7 136 chr3R 10971470 intergenic not near genes chr3R 10971538 intergenic not near genes chr3R 10971606 intergenic not near genes chr3R_6_10970001 chr3R_10970001 RAL-703 1418 chr3R 11085474 11085490 chr3R 11085540 11085564 4 82 2.0 1.0 1.5 1.6 90 chr3R 11085474 3` UTR CR44940 - chr3R 11085519 intergenic CR44940 - chr3R 11085564 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-703 1419 chr3R 11102315 11102348 chr3R 11102406 11102431 6 96 5.5 6.0 5.8 0.9 116 chr3R 11102315 intergenic not near genes chr3R 11102373 intergenic not near genes chr3R 11102431 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-703 1420 chr3R 11192265 11192310 chr3R 11192932 11192974 19 657 5.0 2.5 3.8 4.0 709 chr3R 11192265 intergenic not near genes chr3R 11192620 intergenic not near genes chr3R 11192974 intergenic not near genes chr3R_19_11190001 chr3R_11190001 RAL-703 1421 chr3R 11261228 11261251 chr3R 11261343 11261367 7 116 4.0 3.0 3.5 1.6 139 chr3R 11261228 intergenic not near genes chr3R 11261298 intergenic not near genes chr3R 11261367 intergenic not near genes chr3R_7_11260001 chr3R_11260001 RAL-703 1422 chr3R 11379222 11379234 chr3R 11388397 11388401 roo 5 9172 8.5 4.0 6.2 0.7 9179 chr3R 11379222 intron pros + chr3R 11383812 intron pros + chr3R 11388401 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-703 1423 chr3R 11476930 11476968 chr3R 11477052 11477084 9 121 3.0 0.5 1.8 3.2 154 chr3R 11476930 intergenic not near genes chr3R 11477007 intergenic not near genes chr3R 11477084 intergenic not near genes chr3R_9_11475001 chr3R_11475001 RAL-703 1424 chr3R 11513831 11513866 chr3R 11513933 11513968 7 99 3.5 3.0 3.2 1.7 137 chr3R 11513831 intergenic not near genes chr3R 11513900 intergenic not near genes chr3R 11513968 intergenic not near genes chr3R_7_11510001 chr3R_11510001 RAL-703 1425 chr3R 11518808 11518836 chr3R 11518919 11518947 9 108 3.0 2.5 2.8 2.4 139 chr3R 11518808 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518947 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-703 1426 chr3R 11664772 11664820 chr3R 11664884 11664932 10 108 4.5 2.5 3.5 2.2 160 chr3R 11664772 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664932 intron CG42327 + chr3R_10_11660001 chr3R_11660001 RAL-703 1427 chr3R 11694710 11694748 chr3R 11694821 11694859 6 108 3.5 0.5 2.0 2.0 149 chr3R 11694710 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694859 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-703 1428 chr3R 11695721 11695764 chr3R 11695822 11695865 9 101 2.0 4.0 3.0 2.2 144 chr3R 11695721 intergenic not near genes chr3R 11695793 intergenic not near genes chr3R 11695865 intergenic not near genes chr3R_9_11695001 chr3R_11695001 RAL-703 1429 chr3R 11841056 11841095 chr3R 11846266 11846299 BS 12 5208 2.0 4.5 3.2 2.9 5243 chr3R 11841056 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846299 intron CG6959 - chr3R_12_11840001 chr3R_11840001 RAL-703 1430 chr3R 11920956 11921000 chr3R 11921073 11921081 12 106 2.0 4.5 3.2 2.9 125 chr3R 11920956 intron Cad87A - chr3R 11921018 intron Cad87A - chr3R 11921081 intron Cad87A - chr3R_12_11920001 chr3R_11920001 RAL-703 1431 chr3R 11994991 11995024 chr3R 11995078 11995107 7 87 4.0 2.5 3.2 1.7 116 chr3R 11994991 exon Tk - chr3R 11995049 exon Tk - chr3R 11995107 exon Tk - chr3R_7_11995001 chr3R_11995001 RAL-703 1432 chr3R 12022868 12022913 chr3R 12025065 12025106 pogo 6 2193 1.5 4.5 3.0 1.5 2238 chr3R 12022868 intergenic not near genes chr3R 12023987 intergenic not near genes chr3R 12025106 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-703 1433 chr3R 12037333 12037345 chr3R 12037586 12037624 4 269 0.0 3.0 1.5 1.6 291 chr3R 12037333 intergenic not near genes chr3R 12037478 intergenic not near genes chr3R 12037624 intergenic not near genes chr3R_4_12035001 chr3R_12035001 RAL-703 1434 chr3R 12080846 12080898 chr3R 12080941 12080996 8 93 1.5 4.0 2.8 2.1 150 chr3R 12080846 intron CG14741 - chr3R 12080921 intron CG14741 - chr3R 12080996 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-703 1435 chr3R 12085662 12085692 chr3R 12085946 12085972 7 291 2.5 2.0 2.2 2.2 310 chr3R 12085662 intron CG14741 - chr3R 12085817 intron CG14741 - chr3R 12085972 intron CG14741 - chr3R_7_12085001 chr3R_12085001 RAL-703 1436 chr3R 12097225 12097266 chr3R 12097344 12097389 5 121 3.5 2.0 2.8 1.3 164 chr3R 12097225 intron dpr17 + chr3R 12097307 intron dpr17 + chr3R 12097389 intron dpr17 + chr3R_5_12095001 chr3R_12095001 RAL-703 1437 chr3R 12102877 12102885 chr3R 12102992 12103000 4 115 4.5 8.0 6.2 0.6 123 chr3R 12102877 intron dpr17 + chr3R 12102938 intron dpr17 + chr3R 12103000 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-703 1438 chr3R 12111877 12111924 chr3R 12111967 12112020 6 94 2.0 2.0 2.0 2.0 143 chr3R 12111877 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12112020 intergenic not near genes chr3R_6_12110001 chr3R_12110001 RAL-703 1439 chr3R 12112322 12112354 chr3R 12112437 12112469 6 108 4.5 2.0 3.2 1.4 147 chr3R 12112322 intergenic not near genes chr3R 12112396 intergenic not near genes chr3R 12112469 intergenic not near genes chr3R_6_12110001 chr3R_12110001 RAL-703 1440 chr3R 12117503 12117548 chr3R 12117904 12117957 8 403 1.5 2.0 1.8 2.9 454 chr3R 12117503 intergenic not near genes chr3R 12117730 intergenic not near genes chr3R 12117957 intergenic not near genes chr3R_8_12115001 chr3R_12115001 RAL-703 1441 chr3R 12119861 12119902 chr3R 12119974 12120021 9 112 0.5 3.5 2.0 3.0 160 chr3R 12119861 intergenic not near genes chr3R 12119941 intergenic not near genes chr3R 12120021 intergenic not near genes chr3R_9_12115001 chr3R_12115001 RAL-703 1442 chr3R 12153259 12153304 chr3R 12153633 12153679 10 369 2.5 3.0 2.8 2.6 420 chr3R 12153259 intron dpr15 - chr3R 12153469 intron dpr15 - chr3R 12153679 intron dpr15 - chr3R_10_12150001 chr3R_12150001 RAL-703 1443 chr3R 12165851 12165890 chr3R 12165949 12165988 5 98 1.5 1.0 1.2 2.3 137 chr3R 12165851 intron Cpn - chr3R 12165920 intron Cpn - chr3R 12165988 intron Cpn - chr3R_5_12165001 chr3R_12165001 RAL-703 1444 chr3R 12599357 12599397 chr3R 12599460 12599497 7 99 4.0 3.5 3.8 1.5 140 chr3R 12599357 intergenic not near genes chr3R 12599427 intergenic not near genes chr3R 12599497 intergenic not near genes chr3R_7_12595001 chr3R_12595001 RAL-703 1445 chr3R 12642980 12643002 chr3R 12643277 12643296 5 296 5.0 2.5 3.8 1.0 316 chr3R 12642980 intergenic CG6753 - chr3R 12643138 intergenic not near genes chr3R 12643296 intergenic not near genes chr3R_5_12640001 chr3R_12640001 RAL-703 1446 chr3R 12717098 12717132 chr3R 12717208 12717218 10 101 2.0 3.5 2.8 2.6 120 chr3R 12717098 intron Men - chr3R 12717158 intron Men - chr3R 12717218 intron Men - chr3R_10_12715001 chr3R_12715001 RAL-703 1447 chr3R 12782437 12782484 chr3R 12782532 12782577 6 92 3.5 1.5 2.5 1.7 140 chr3R 12782437 intron beat-Vc - chr3R 12782507 intron beat-Vc - chr3R 12782577 intron beat-Vc - chr3R_6_12780001 chr3R_12780001 RAL-703 1448 chr3R 12786437 12786489 chr3R 12786814 12786867 6 376 1.0 2.0 1.5 2.4 430 chr3R 12786437 intergenic not near genes chr3R 12786652 intergenic not near genes chr3R 12786867 intergenic not near genes chr3R_6_12785001 chr3R_12785001 RAL-703 1449 chr3R 12864540 12864591 chr3R 12865045 12865096 roo 8 505 1.0 0.5 0.8 4.4 556 chr3R 12864540 intergenic not near genes chr3R 12864818 intergenic not near genes chr3R 12865096 intergenic not near genes chr3R_8_12860001 chr3R_12860001 RAL-703 1450 chr3R 12880098 12880142 chr3R 12880193 12880223 11 91 3.5 3.5 3.5 2.4 125 chr3R 12880098 intergenic not near genes chr3R 12880160 intergenic not near genes chr3R 12880223 intergenic not near genes chr3R_11_12880001 chr3R_12880001 RAL-703 1451 chr3R 12941894 12941914 chr3R 12942008 12942014 6 109 5.0 4.5 4.8 1.0 120 chr3R 12941894 intergenic not near genes chr3R 12941954 intergenic not near genes chr3R 12942014 intergenic not near genes chr3R_6_12940001 chr3R_12940001 RAL-703 1452 chr3R 12941925 12941941 chr3R 12942006 12942055 4 95 3.0 4.5 3.8 0.8 130 chr3R 12941925 intergenic not near genes chr3R 12941990 intergenic not near genes chr3R 12942055 intergenic not near genes chr3R_4_12940001 chr3R_12940001 RAL-703 1453 chr3R 12943958 12944001 chr3R 12944065 12944109 5 107 2.0 2.0 2.0 1.7 151 chr3R 12943958 intergenic not near genes chr3R 12944034 intergenic not near genes chr3R 12944109 intergenic not near genes chr3R_5_12940001 chr3R_12940001 RAL-703 1454 chr3R 12944536 12944567 chr3R 12944639 12944670 7 102 2.5 1.5 2.0 2.3 134 chr3R 12944536 intergenic not near genes chr3R 12944603 intergenic not near genes chr3R 12944670 intergenic not near genes chr3R_7_12940001 chr3R_12940001 RAL-703 1455 chr3R 13018130 13018178 chr3R 13018229 13018253 13 95 3.5 5.5 4.5 2.4 123 chr3R 13018130 intron CtBP + chr3R 13018192 intron CtBP + chr3R 13018253 intron CtBP + chr3R_13_13015001 chr3R_13015001 RAL-703 1456 chr3R 13059959 13059973 chr3R 13060157 13060163 8 206 4.5 2.0 3.2 1.9 204 chr3R 13059959 intron sim + chr3R 13060061 intron sim + chr3R 13060163 intron sim + chr3R_8_13060001 chr3R_13060001 RAL-703 1457 chr3R 13073965 13073999 chr3R 13074064 13074098 6 95 3.5 3.5 3.5 1.3 133 chr3R 13073965 intron sim + chr3R 13074032 intron sim + chr3R 13074098 exon sim + chr3R_6_13070001 chr3R_13070001 RAL-703 1458 chr3R 13075350 13075384 chr3R 13075451 13075484 12 100 0.5 2.5 1.5 4.8 134 chr3R 13075350 intron sim + chr3R 13075417 intron sim + chr3R 13075484 intron sim + chr3R_12_13075001 chr3R_13075001 RAL-703 1459 chr3R 13120758 13120795 chr3R 13120855 13120892 8 92 3.5 2.0 2.8 2.1 134 chr3R 13120758 intron timeout + chr3R 13120825 intron timeout + chr3R 13120892 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-703 1460 chr3R 13135825 13135856 chr3R 13138009 13138041 pogo 4 2189 5.0 2.0 3.5 0.9 2216 chr3R 13135825 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136933 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-703 1461 chr3R 13143025 13143063 chr3R 13148618 13148652 mdg3 9 5588 3.0 2.5 2.8 2.4 5627 chr3R 13143025 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145838 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148652 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-703 1462 chr3R 13348986 13349034 chr3R 13349082 13349130 11 93 2.0 4.5 3.2 2.6 144 chr3R 13348986 intergenic not near genes chr3R 13349058 intergenic not near genes chr3R 13349130 intergenic not near genes chr3R_11_13345001 chr3R_13345001 RAL-703 1463 chr3R 13435369 13435419 chr3R 13435564 13435611 14 193 3.0 2.0 2.5 4.0 242 chr3R 13435369 intergenic yrt - chr3R 13435490 intergenic not near genes chr3R 13435611 intergenic not near genes chr3R_14_13435001 chr3R_13435001 RAL-703 1464 chr3R 13554142 13554176 chr3R 13554233 13554249 6 87 4.0 4.0 4.0 1.2 107 chr3R 13554142 intergenic not near genes chr3R 13554196 intergenic not near genes chr3R 13554249 intergenic not near genes chr3R_6_13550001 chr3R_13550001 RAL-703 1465 chr3R 13603046 13603329 chr3R 13603147 13603441 10 110 7.0 6.0 6.5 1.3 395 chr3R 13603046 intergenic not near genes chr3R 13603244 intergenic not near genes chr3R 13603441 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-703 1466 chr3R 13603338 13603372 chr3R 13603449 13603484 6 111 1.5 4.0 2.8 1.6 146 chr3R 13603338 intergenic not near genes chr3R 13603411 intergenic not near genes chr3R 13603484 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-703 1467 chr3R 13604059 13604087 chr3R 13604314 13604342 7 255 1.0 2.5 1.8 2.5 283 chr3R 13604059 intergenic not near genes chr3R 13604200 intergenic not near genes chr3R 13604342 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-703 1468 chr3R 13606709 13606733 chr3R 13606876 13606898 5 167 2.0 1.5 1.8 1.8 189 chr3R 13606709 intergenic CG9759 - chr3R 13606804 intergenic CG9759 - chr3R 13606898 intergenic CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-703 1469 chr3R 13659718 13659825 chr3R 13659827 13659933 4 104 0.0 0.0 0.0 4.0 215 chr3R 13659718 intron Hrb87F - chr3R 13659826 intron Hrb87F - chr3R 13659933 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-703 1470 chr3R 13672930 13672969 chr3R 13673028 13673065 9 98 3.0 5.5 4.2 1.7 135 chr3R 13672930 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673065 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-703 1471 chr3R 13693028 13693028 chr3R 21907534 21907536 10 8214507 8.0 10.5 9.2 1.0 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-703 1472 chr3R 13890838 13890842 chr3R 13891112 13891125 4 280 3.5 3.5 3.5 0.9 287 chr3R 13890838 intergenic not near genes chr3R 13890982 intergenic not near genes chr3R 13891125 intergenic not near genes chr3R_4_13890001 chr3R_13890001 RAL-703 1473 chr3R 13975374 13975390 chr3R 13975473 13975474 8 98 7.5 4.0 5.8 1.2 100 chr3R 13975374 intron rdx - chr3R 13975424 intron rdx - chr3R 13975474 intron rdx - chr3R_8_13975001 chr3R_13975001 RAL-703 1474 chr3R 14037570 14037589 chr3R 14037667 14037687 5 94 2.5 2.0 2.2 1.6 117 chr3R 14037570 intergenic not near genes chr3R 14037628 intergenic not near genes chr3R 14037687 intergenic not near genes chr3R_5_14035001 chr3R_14035001 RAL-703 1475 chr3R 14049002 14049046 chr3R 14049102 14049146 10 95 3.0 3.0 3.0 2.5 144 chr3R 14049002 intergenic not near genes chr3R 14049074 intergenic not near genes chr3R 14049146 intergenic not near genes chr3R_10_14045001 chr3R_14045001 RAL-703 1476 chr3R 14067133 14067156 chr3R 14067232 14067255 7 96 2.5 1.0 1.8 2.5 122 chr3R 14067133 exon foxo + chr3R 14067194 intron foxo + chr3R 14067255 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-703 1477 chr3R 14170781 14170829 chr3R 14170885 14170923 9 104 2.5 2.5 2.5 2.6 142 chr3R 14170781 3` UTR Dop1R1 - chr3R 14170852 3` UTR Dop1R1 - chr3R 14170923 3` UTR Dop1R1 - chr3R_9_14170001 chr3R_14170001 RAL-703 1478 chr3R 14231931 14231965 chr3R 14232049 14232066 8 110 3.5 2.5 3.0 2.0 135 chr3R 14231931 intergenic not near genes chr3R 14231998 intergenic not near genes chr3R 14232066 intergenic not near genes chr3R_8_14230001 chr3R_14230001 RAL-703 1479 chr3R 14246394 14246412 chr3R 14247896 14247928 jockey 5 1506 4.0 4.5 4.2 1.0 1534 chr3R 14246394 intergenic not near genes chr3R 14247161 intergenic not near genes chr3R 14247928 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-703 1480 chr3R 14319043 14319093 chr3R 14319145 14319167 9 96 2.0 1.5 1.8 3.2 124 chr3R 14319043 3` UTR pr-set7 + chr3R 14319105 3` UTR pr-set7 + chr3R 14319167 3` UTR pr-set7 + chr3R_9_14315001 chr3R_14315001 RAL-703 1481 chr3R 14363733 14363749 chr3R 14363823 14363850 6 98 2.5 5.5 4.0 1.2 117 chr3R 14363733 intron NK7.1 - chr3R 14363792 intron NK7.1 - chr3R 14363850 intron NK7.1 - chr3R_6_14360001 chr3R_14360001 RAL-703 1482 chr3R 14440724 14440753 chr3R 14440820 14440849 8 94 1.5 5.5 3.5 1.8 125 chr3R 14440724 intron cv-c - chr3R 14440786 intron cv-c - chr3R 14440849 intron cv-c - chr3R_8_14440001 chr3R_14440001 RAL-703 1483 chr3R 14442557 14442593 chr3R 14442662 14442698 4 99 3.0 4.0 3.5 0.9 141 chr3R 14442557 intron cv-c - chr3R 14442628 intron cv-c - chr3R 14442698 intron cv-c - chr3R_4_14440001 chr3R_14440001 RAL-703 1484 chr3R 14546039 14546073 chr3R 14546120 14546170 5 93 3.5 0.0 1.8 1.8 131 chr3R 14546039 intron Pde6 - chr3R 14546104 intron Pde6 - chr3R 14546170 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-703 1485 chr3R 14577977 14577989 chr3R 14578107 14578109 5 130 2.5 6.0 4.2 1.0 132 chr3R 14577977 intron stumps + chr3R 14578043 intron stumps + chr3R 14578109 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-703 1486 chr3R 14579353 14579381 chr3R 14579441 14579490 9 100 4.0 3.0 3.5 2.0 137 chr3R 14579353 intron stumps + chr3R 14579422 intron stumps + chr3R 14579490 intron stumps + chr3R_9_14575001 chr3R_14575001 RAL-703 1487 chr3R 14612425 14612464 chr3R 14612565 14612602 7 139 3.0 0.5 1.8 2.5 177 chr3R 14612425 intron CG14853 + chr3R 14612514 intron CG14853 + chr3R 14612602 intron CG14853 + chr3R_7_14610001 chr3R_14610001 RAL-703 1488 chr3R 14631236 14631284 chr3R 14631334 14631375 9 94 3.0 2.5 2.8 2.4 139 chr3R 14631236 intron,intron CG7886 -,Cad88C + chr3R 14631306 intron,intron CG7886 -,Cad88C + chr3R 14631375 intron,intron CG7886 -,Cad88C + chr3R_9_14630001 chr3R_14630001 RAL-703 1489 chr3R 14704378 14704411 chr3R 14704475 14704508 6 95 1.5 4.0 2.8 1.6 130 chr3R 14704378 intron kibra - chr3R 14704443 intron kibra - chr3R 14704508 intron kibra - chr3R_6_14700001 chr3R_14700001 RAL-703 1490 chr3R 14778480 14778503 chr3R 14778587 14778614 5 105 1.5 2.0 1.8 1.8 134 chr3R 14778480 intron jvl + chr3R 14778547 intron jvl + chr3R 14778614 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-703 1491 chr3R 14872318 14872364 chr3R 14872426 14872471 9 107 2.0 1.5 1.8 3.2 153 chr3R 14872318 intron btsz - chr3R 14872394 intron btsz - chr3R 14872471 intron btsz - chr3R_9_14870001 chr3R_14870001 RAL-703 1492 chr3R 14923708 14923747 chr3R 14923804 14923835 6 90 4.0 7.5 5.8 0.9 127 chr3R 14923708 3` UTR CR45598 - chr3R 14923772 intergenic CR45598 - chr3R 14923835 intergenic CR45598 - chr3R_6_14920001 chr3R_14920001 RAL-703 1493 chr3R 14953970 14954011 chr3R 14954090 14954120 10 122 3.0 1.0 2.0 3.3 150 chr3R 14953970 intergenic not near genes chr3R 14954045 intergenic not near genes chr3R 14954120 intergenic not near genes chr3R_10_14950001 chr3R_14950001 RAL-703 1494 chr3R 14973170 14973198 chr3R 14973254 14973295 7 91 2.0 1.5 1.8 2.5 125 chr3R 14973170 intergenic not near genes chr3R 14973232 intergenic not near genes chr3R 14973295 intergenic not near genes chr3R_7_14970001 chr3R_14970001 RAL-703 1495 chr3R 14983132 14983160 chr3R 14983300 14983308 4 163 1.5 0.5 1.0 2.0 176 chr3R 14983132 intergenic not near genes chr3R 14983220 intergenic not near genes chr3R 14983308 intergenic not near genes chr3R_4_14980001 chr3R_14980001 RAL-703 1496 chr3R 14990553 14990597 chr3R 14990848 14990895 12 290 3.0 3.5 3.2 2.9 342 chr3R 14990553 intergenic not near genes chr3R 14990724 intergenic not near genes chr3R 14990895 intergenic not near genes chr3R_12_14990001 chr3R_14990001 RAL-703 1497 chr3R 14990867 14990897 chr3R 14991382 14991412 7 513 4.0 4.0 4.0 1.4 545 chr3R 14990867 intergenic not near genes chr3R 14991140 intergenic not near genes chr3R 14991412 intergenic not near genes chr3R_7_14990001 chr3R_14990001 RAL-703 1498 chr3R 15026311 15026346 chr3R 15026417 15026450 6 105 2.0 2.5 2.2 1.9 139 chr3R 15026311 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026450 intergenic not near genes chr3R_6_15025001 chr3R_15025001 RAL-703 1499 chr3R 15041410 15041440 chr3R 15045198 15045228 Doc 6 3788 3.5 1.5 2.5 1.7 3818 chr3R 15041410 intergenic not near genes chr3R 15043319 intergenic not near genes chr3R 15045228 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-703 1500 chr3R 15076648 15076679 chr3R 15076738 15076775 4 98 4.0 1.0 2.5 1.1 127 chr3R 15076648 intron dpr9 - chr3R 15076712 intron dpr9 - chr3R 15076775 intron dpr9 - chr3R_4_15075001 chr3R_15075001 RAL-703 1501 chr3R 15079805 15079838 chr3R 15080066 15080093 pogo 5 257 3.0 3.0 3.0 1.2 288 chr3R 15079805 3` UTR CG6966 - chr3R 15079949 3` UTR CG6966 - chr3R 15080093 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-703 1502 chr3R 15088073 15088098 chr3R 15088190 15088195 5 114 2.5 0.0 1.2 2.3 122 chr3R 15088073 intron CG6966 - chr3R 15088134 intron CG6966 - chr3R 15088195 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-703 1503 chr3R 15114922 15114931 chr3R 15115019 15115029 5 97 4.5 2.5 3.5 1.1 107 chr3R 15114922 intron CG42788 - chr3R 15114976 intron CG42788 - chr3R 15115029 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-703 1504 chr3R 15127765 15127810 chr3R 15127865 15127910 7 98 0.0 1.0 0.5 4.7 145 chr3R 15127765 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127910 intron CG42788 - chr3R_7_15125001 chr3R_15125001 RAL-703 1505 chr3R 15132044 15132069 chr3R 15135124 15135149 Juan 18 3077 10.0 13.0 11.5 1.4 3105 chr3R 15132044 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135149 3` UTR CG6912 - chr3R_18_15130001 chr3R_15130001 RAL-703 1506 chr3R 15130866 15130888 chr3R 15141208 15141242 9 10349 19.0 24.5 21.8 0.4 10376 chr3R 15130866 intron CG42788 - chr3R 15136054 exon CG6912 - chr3R 15141242 exon CG3987 + chr3R_9_15135001 chr3R_15135001 RAL-703 1507 chr3R 15143906 15143954 chr3R 15144109 15144146 9 201 0.0 2.5 1.2 4.1 240 chr3R 15143906 intron GlyS - chr3R 15144026 intron GlyS - chr3R 15144146 intron GlyS - chr3R_9_15140001 chr3R_15140001 RAL-703 1508 chr3R 15190638 15190680 chr3R 15190782 15190825 4 145 2.0 2.5 2.2 1.2 187 chr3R 15190638 3` UTR Gyc88E + chr3R 15190732 3` UTR Gyc88E + chr3R 15190825 3` UTR Gyc88E + chr3R_4_15190001 chr3R_15190001 RAL-703 1509 chr3R 15452256 15452305 chr3R 15452353 15452402 19 94 3.5 4.0 3.8 4.0 146 chr3R 15452256 intron AdamTS-A - chr3R 15452329 intron AdamTS-A - chr3R 15452402 intron AdamTS-A - chr3R_19_15450001 chr3R_15450001 RAL-703 1510 chr3R 15517579 15517631 chr3R 15517681 15517731 6 99 3.0 2.0 2.5 1.7 152 chr3R 15517579 intergenic not near genes chr3R 15517655 intergenic not near genes chr3R 15517731 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-703 1511 chr3R 15601155 15601192 chr3R 15608697 15608719 412 7 7539 5.0 7.0 6.0 1.0 7564 chr3R 15601155 intergenic not near genes chr3R 15604937 intergenic not near genes chr3R 15608719 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-703 1512 chr3R 15618724 15618763 chr3R 15626218 15626257 blood 6 7492 2.0 4.0 3.0 1.5 7533 chr3R 15618724 intergenic not near genes chr3R 15622490 intergenic not near genes chr3R 15626257 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-703 1513 chr3R 15635188 15635236 chr3R 15635329 15635368 5 136 0.0 3.5 1.8 1.8 180 chr3R 15635188 intergenic CG43335 + chr3R 15635278 intergenic CG43335 + chr3R 15635368 intergenic CG43335 + chr3R_5_15635001 chr3R_15635001 RAL-703 1514 chr3R 15646779 15646800 chr3R 15646882 15646894 4 100 3.0 1.0 2.0 1.3 115 chr3R 15646779 intergenic not near genes chr3R 15646836 intergenic not near genes chr3R 15646894 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-703 1515 chr3R 15811480 15811528 chr3R 15811741 15811788 7 258 4.0 4.5 4.2 1.3 308 chr3R 15811480 intron alpha-Man-IIb + chr3R 15811634 intron alpha-Man-IIb + chr3R 15811788 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_7_15810001 chr3R_15810001 RAL-703 1516 chr3R 15892648 15892681 chr3R 15892746 15892782 4 100 4.5 2.5 3.5 0.9 134 chr3R 15892648 intron CG14877 - chr3R 15892715 intron CG14877 - chr3R 15892782 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-703 1517 chr3R 16073422 16073475 chr3R 16073544 16073599 11 122 2.0 1.5 1.8 3.9 177 chr3R 16073422 intron Mhcl - chr3R 16073510 intron Mhcl - chr3R 16073599 intron Mhcl - chr3R_11_16070001 chr3R_16070001 RAL-703 1518 chr3R 16213844 16213876 chr3R 16213940 16213976 5 92 3.5 4.0 3.8 1.0 132 chr3R 16213844 intergenic CR45642 +,CR45641 + chr3R 16213910 intergenic CR45642 +,CR45641 + chr3R 16213976 intergenic CR45642 +,CR45641 + chr3R_5_16210001 chr3R_16210001 RAL-703 1519 chr3R 16225073 16225114 chr3R 16225174 16225217 6 103 3.0 2.5 2.8 1.6 144 chr3R 16225073 intergenic not near genes chr3R 16225145 intergenic not near genes chr3R 16225217 intergenic tara + chr3R_6_16225001 chr3R_16225001 RAL-703 1520 chr3R 16320776 16320808 chr3R 16321164 16321202 6 392 1.5 5.0 3.2 1.4 426 chr3R 16320776 intron Sulf1 - chr3R 16320989 intron Sulf1 - chr3R 16321202 intron Sulf1 - chr3R_6_16320001 chr3R_16320001 RAL-703 1521 chr3R 16374291 16374314 chr3R 16374412 16374449 4 132 2.0 2.0 2.0 1.3 158 chr3R 16374291 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374449 3` UTR ss - chr3R_4_16370001 chr3R_16370001 RAL-703 1522 chr3R 16472581 16472602 chr3R 16472663 16472665 5 80 5.0 4.5 4.8 0.9 84 chr3R 16472581 intergenic Gyc-89Da + chr3R 16472623 5` UTR Gyc-89Da + chr3R 16472665 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-703 1523 chr3R 16582910 16582919 chr3R 16582991 16583017 4 89 5.5 4.5 5.0 0.7 107 chr3R 16582910 intron Scp2 - chr3R 16582964 intron Scp2 - chr3R 16583017 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-703 1524 chr3R 16756309 16756349 chr3R 16762520 16762528 diver 7 6200 3.5 2.5 3.0 1.8 6219 chr3R 16756309 intron bxd - chr3R 16759418 intron bxd - chr3R 16762528 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-703 1525 chr3R 16849702 16849722 chr3R 16849824 16849845 8 121 4.5 3.5 4.0 1.6 143 chr3R 16849702 intron iab-8 - chr3R 16849774 intron iab-8 - chr3R 16849845 intron iab-8 - chr3R_8_16845001 chr3R_16845001 RAL-703 1526 chr3R 16860336 16860357 chr3R 16860416 16860450 6 90 2.0 0.5 1.2 2.7 114 chr3R 16860336 intron iab-8 - chr3R 16860393 intron iab-8 - chr3R 16860450 intron iab-8 - chr3R_6_16860001 chr3R_16860001 RAL-703 1527 chr3R 16879172 16879226 chr3R 16879281 16879318 10 104 1.5 4.0 2.8 2.6 146 chr3R 16879172 intron iab-8 - chr3R 16879245 intron iab-8 - chr3R 16879318 intron iab-8 - chr3R_10_16875001 chr3R_16875001 RAL-703 1528 chr3R 17067490 17067536 chr3R 17067592 17067606 13 96 4.5 4.0 4.2 2.5 116 chr3R 17067490 intron Dad + chr3R 17067548 intron Dad + chr3R 17067606 intron Dad + chr3R_13_17065001 chr3R_17065001 RAL-703 1529 chr3R 17176637 17176690 chr3R 17176762 17176803 11 115 1.0 2.5 1.8 3.9 166 chr3R 17176637 intron Mur89F - chr3R 17176720 intron Mur89F - chr3R 17176803 intron Mur89F - chr3R_11_17175001 chr3R_17175001 RAL-703 1530 chr3R 17184732 17184743 chr3R 17184828 17184839 4 96 3.5 6.5 5.0 0.7 107 chr3R 17184732 intron Mur89F - chr3R 17184786 intron Mur89F - chr3R 17184839 intron Mur89F - chr3R_4_17180001 chr3R_17180001 RAL-703 1531 chr3R 17194399 17194429 chr3R 17194496 17194527 9 96 2.5 2.5 2.5 2.6 128 chr3R 17194399 intron Mur89F - chr3R 17194463 intron Mur89F - chr3R 17194527 intron Mur89F - chr3R_9_17190001 chr3R_17190001 RAL-703 1532 chr3R 17268653 17268700 chr3R 17268795 17268824 11 134 1.5 1.5 1.5 4.4 171 chr3R 17268653 intergenic not near genes chr3R 17268738 intergenic not near genes chr3R 17268824 intergenic not near genes chr3R_11_17265001 chr3R_17265001 RAL-703 1533 chr3R 17273955 17273965 chr3R 17274082 17274092 4 127 2.5 1.0 1.8 1.4 137 chr3R 17273955 intergenic not near genes chr3R 17274024 intergenic not near genes chr3R 17274092 intergenic not near genes chr3R_4_17270001 chr3R_17270001 RAL-703 1534 chr3R 17273966 17273998 chr3R 17274076 17274121 6 117 1.0 1.0 1.0 3.0 155 chr3R 17273966 intergenic not near genes chr3R 17274044 intergenic not near genes chr3R 17274121 intergenic not near genes chr3R_6_17270001 chr3R_17270001 RAL-703 1535 chr3R 17294652 17294694 chr3R 17295099 17295123 BS 12 446 3.5 5.5 4.5 2.2 471 chr3R 17294652 intergenic not near genes chr3R 17294888 intergenic not near genes chr3R 17295123 intergenic not near genes chr3R_12_17290001 chr3R_17290001 RAL-703 1536 chr3R 17346686 17346709 chr3R 17348269 17348292 F-element 5 1579 3.0 5.0 4.0 1.0 1606 chr3R 17346686 intron beat-IIa - chr3R 17347489 intron beat-IIa - chr3R 17348292 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-703 1537 chr3R 17394426 17394455 chr3R 17394603 17394638 6 180 2.5 3.0 2.8 1.6 212 chr3R 17394426 intron CREG - chr3R 17394532 intron CREG - chr3R 17394638 5` UTR CREG - chr3R_6_17390001 chr3R_17390001 RAL-703 1538 chr3R 17461188 17461222 chr3R 17461290 17461324 10 101 3.0 4.0 3.5 2.2 136 chr3R 17461188 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461324 intergenic not near genes chr3R_10_17460001 chr3R_17460001 RAL-703 1539 chr3R 17497944 17497993 chr3R 17498050 17498099 6 101 2.0 1.0 1.5 2.4 155 chr3R 17497944 intron Dscam3 - chr3R 17498022 intron Dscam3 - chr3R 17498099 intron Dscam3 - chr3R_6_17495001 chr3R_17495001 RAL-703 1540 chr3R 17521571 17521587 chr3R 17521733 17521766 8 165 0.5 4.5 2.5 2.3 195 chr3R 17521571 intergenic not near genes chr3R 17521668 intergenic not near genes chr3R 17521766 intergenic not near genes chr3R_8_17520001 chr3R_17520001 RAL-703 1541 chr3R 17531567 17531598 chr3R 17531653 17531703 6 100 1.0 1.0 1.0 3.0 136 chr3R 17531567 intergenic not near genes chr3R 17531635 intergenic not near genes chr3R 17531703 intergenic not near genes chr3R_6_17530001 chr3R_17530001 RAL-703 1542 chr3R 17591293 17591327 chr3R 17591724 17591726 F-element 6 440 2.5 3.5 3.0 1.5 433 chr3R 17591293 intergenic not near genes chr3R 17591510 intergenic not near genes chr3R 17591726 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-703 1543 chr3R 17592156 17592187 chr3R 17592240 17592289 9 97 4.0 1.5 2.8 2.4 133 chr3R 17592156 intergenic not near genes chr3R 17592222 intergenic not near genes chr3R 17592289 intergenic not near genes chr3R_9_17590001 chr3R_17590001 RAL-703 1544 chr3R 17647223 17647263 chr3R 17647340 17647379 4 112 2.0 1.0 1.5 1.6 156 chr3R 17647223 intergenic CG14322 + chr3R 17647301 intergenic CG14322 + chr3R 17647379 intergenic CG14322 + chr3R_4_17645001 chr3R_17645001 RAL-703 1545 chr3R 17657653 17657661 chr3R 17657803 17657832 INE-1 5 166 0.0 2.5 1.2 2.3 179 chr3R 17657653 intron CG14322 + chr3R 17657742 intron CG14322 + chr3R 17657832 intron CG14322 + chr3R_5_17655001 chr3R_17655001 RAL-703 1546 chr3R 17701372 17701392 chr3R 17701471 17701492 4 94 2.0 3.5 2.8 1.1 120 chr3R 17701372 intron osa - chr3R 17701432 intron osa - chr3R 17701492 intron osa - chr3R_4_17700001 chr3R_17700001 RAL-703 1547 chr3R 17823204 17823221 chr3R 17823309 17823326 4 105 2.0 1.5 1.8 1.4 122 chr3R 17823204 intron tinc + chr3R 17823265 intron tinc + chr3R 17823326 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-703 1548 chr3R 17856024 17856038 chr3R 17856144 17856155 5 119 6.5 6.5 6.5 0.7 131 chr3R 17856024 intron tinc + chr3R 17856090 intron tinc + chr3R 17856155 intron tinc + chr3R_5_17855001 chr3R_17855001 RAL-703 1549 chr3R 17895323 17895368 chr3R 17895432 17895467 6 108 2.0 2.0 2.0 2.0 144 chr3R 17895323 intron Rim - chr3R 17895395 intron Rim - chr3R 17895467 intron Rim - chr3R_6_17895001 chr3R_17895001 RAL-703 1550 chr3R 17899074 17899087 chr3R 17899172 17899185 5 98 3.5 3.5 3.5 1.1 111 chr3R 17899074 intron Rim - chr3R 17899130 intron Rim - chr3R 17899185 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-703 1551 chr3R 18003017 18003035 chr3R 18003132 18003151 6 115 5.5 0.0 2.8 1.6 134 chr3R 18003017 intron cpo + chr3R 18003084 intron cpo + chr3R 18003151 intron cpo + chr3R_6_18000001 chr3R_18000001 RAL-703 1552 chr3R 18281408 18281429 chr3R 18281504 18281525 6 93 3.5 7.0 5.2 1.0 117 chr3R 18281408 intron eIF-1A + chr3R 18281466 intron eIF-1A + chr3R 18281525 intron eIF-1A + chr3R_6_18280001 chr3R_18280001 RAL-703 1553 chr3R 18338991 18339021 chr3R 18339106 18339138 5 118 0.0 3.5 1.8 1.8 147 chr3R 18338991 intron CG15803 - chr3R 18339064 intron CG15803 - chr3R 18339138 intron CG15803 - chr3R_5_18335001 chr3R_18335001 RAL-703 1554 chr3R 18379629 18379639 chr3R 18379955 18379965 4 326 5.0 5.5 5.2 0.6 336 chr3R 18379629 intron CG7675 - chr3R 18379797 intron CG7675 - chr3R 18379965 intron CG7675 - chr3R_4_18375001 chr3R_18375001 RAL-703 1555 chr3R 18379641 18379649 chr3R 18379954 18379973 4 322 2.5 5.5 4.0 0.8 332 chr3R 18379641 intron CG7675 - chr3R 18379807 intron CG7675 - chr3R 18379973 intron CG7675 - chr3R_4_18375001 chr3R_18375001 RAL-703 1556 chr3R 18394464 18394502 chr3R 18394559 18394599 8 96 4.0 4.0 4.0 1.6 135 chr3R 18394464 intron Vha100-2 - chr3R 18394532 intron Vha100-2 - chr3R 18394599 intron Vha100-2 - chr3R_8_18390001 chr3R_18390001 RAL-703 1557 chr3R 18489779 18489817 chr3R 18489881 18489887 6 98 0.5 2.5 1.5 2.4 108 chr3R 18489779 intron fru - chr3R 18489833 intron fru - chr3R 18489887 intron fru - chr3R_6_18485001 chr3R_18485001 RAL-703 1558 chr3R 18498170 18498185 chr3R 18498266 18498279 5 95 1.0 2.0 1.5 2.0 109 chr3R 18498170 intron fru - chr3R 18498224 intron fru - chr3R 18498279 intron fru - chr3R_5_18495001 chr3R_18495001 RAL-703 1559 chr3R 18501585 18501622 chr3R 18501686 18501703 9 98 3.5 1.0 2.2 2.8 118 chr3R 18501585 intron fru - chr3R 18501644 intron fru - chr3R 18501703 intron fru - chr3R_9_18500001 chr3R_18500001 RAL-703 1560 chr3R 18541521 18541546 chr3R 18541615 18541642 5 90 4.0 3.0 3.5 1.1 121 chr3R 18541521 intron fru - chr3R 18541582 intron fru - chr3R 18541642 intron fru - chr3R_5_18540001 chr3R_18540001 RAL-703 1561 chr3R 18617707 18617740 chr3R 18617807 18617840 6 100 1.5 2.0 1.8 2.1 133 chr3R 18617707 intron,intron qin +,CG14304 - chr3R 18617774 intron,intron qin +,CG14304 - chr3R 18617840 intron,intron qin +,CG14304 - chr3R_6_18615001 chr3R_18615001 RAL-703 1562 chr3R 18618249 18618296 chr3R 18618354 18618400 4 105 0.5 1.5 1.0 2.0 151 chr3R 18618249 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618400 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-703 1563 chr3R 18670373 18670401 chr3R 18670480 18670509 8 109 4.0 2.5 3.2 1.9 136 chr3R 18670373 intron CG7702 + chr3R 18670441 intron CG7702 + chr3R 18670509 intron CG7702 + chr3R_8_18670001 chr3R_18670001 RAL-703 1564 chr3R 18766778 18766808 chr3R 18766876 18766906 6 94 3.0 7.0 5.0 1.0 128 chr3R 18766778 intron CG7720 - chr3R 18766842 intron CG7720 - chr3R 18766906 intron CG7720 - chr3R_6_18765001 chr3R_18765001 RAL-703 1565 chr3R 18770277 18770317 chr3R 18770379 18770419 13 100 1.5 2.0 1.8 4.6 142 chr3R 18770277 intron CG7720 - chr3R 18770348 intron CG7720 - chr3R 18770419 intron CG7720 - chr3R_13_18770001 chr3R_18770001 RAL-703 1566 chr3R 18812061 18812109 chr3R 18812158 18812203 14 93 3.5 7.0 5.2 2.3 142 chr3R 18812061 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812203 intron CG18208 - chr3R_14_18810001 chr3R_18810001 RAL-703 1567 chr3R 18817396 18817440 chr3R 18817499 18817537 12 98 3.0 1.5 2.2 3.8 141 chr3R 18817396 intron CG18208 - chr3R 18817466 intron CG18208 - chr3R 18817537 intron CG18208 - chr3R_12_18815001 chr3R_18815001 RAL-703 1568 chr3R 18863157 18863185 chr3R 18863263 18863291 4 106 0.0 3.0 1.5 1.6 134 chr3R 18863157 intergenic not near genes chr3R 18863224 intergenic not near genes chr3R 18863291 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-703 1569 chr3R 18993911 18993940 chr3R 18993999 18994029 8 92 4.5 2.0 3.2 1.9 118 chr3R 18993911 intron gukh + chr3R 18993970 intron gukh + chr3R 18994029 intron gukh + chr3R_8_18990001 chr3R_18990001 RAL-703 1570 chr3R 19139762 19139799 chr3R 19139874 19139880 8 110 2.0 1.5 1.8 2.9 118 chr3R 19139762 3` UTR Ppcs - chr3R 19139821 3` UTR Ppcs - chr3R 19139880 3` UTR Ppcs - chr3R_8_19135001 chr3R_19135001 RAL-703 1571 chr3R 19344653 19344695 chr3R 19344808 19344850 5 153 1.0 3.0 2.0 1.7 197 chr3R 19344653 intergenic not near genes chr3R 19344752 intergenic not near genes chr3R 19344850 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-703 1572 chr3R 19550047 19550087 chr3R 19550175 19550215 4 118 4.5 1.0 2.8 1.1 168 chr3R 19550047 intron Dys + chr3R 19550131 intron Dys + chr3R 19550215 intron Dys + chr3R_4_19550001 chr3R_19550001 RAL-703 1573 chr3R 19667977 19668022 chr3R 19668076 19668125 7 102 0.0 2.0 1.0 3.5 148 chr3R 19667977 intron CG7432 + chr3R 19668051 intron CG7432 + chr3R 19668125 intron CG7432 + chr3R_7_19665001 chr3R_19665001 RAL-703 1574 chr3R 19681586 19681628 chr3R 19681696 19681738 8 107 3.0 1.5 2.2 2.5 152 chr3R 19681586 intron Naam + chr3R 19681662 intron Naam + chr3R 19681738 intron Naam + chr3R_8_19680001 chr3R_19680001 RAL-703 1575 chr3R 19702303 19702354 chr3R 19702402 19702454 22 96 4.5 3.0 3.8 4.6 151 chr3R 19702303 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702454 intergenic not near genes chr3R_22_19700001 chr3R_19700001 RAL-703 1576 chr3R 19716207 19716247 chr3R 19716303 19716326 6 91 1.0 0.0 0.5 4.0 119 chr3R 19716207 intergenic CG34286 - chr3R 19716266 intergenic CG34286 - chr3R 19716326 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-703 1577 chr3R 19783008 19783028 chr3R 19783145 19783163 7 135 2.5 4.0 3.2 1.7 155 chr3R 19783008 exon CG11407 + chr3R 19783086 3` UTR CG11407 + chr3R 19783163 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-703 1578 chr3R 19834530 19834553 chr3R 19834643 19834665 6 112 0.5 0.5 0.5 4.0 135 chr3R 19834530 intron bnl - chr3R 19834598 intron bnl - chr3R 19834665 intron bnl - chr3R_6_19830001 chr3R_19830001 RAL-703 1579 chr3R 19852382 19852382 chr3R 19855090 19855118 7 2711 25.0 36.0 30.5 0.2 2736 chr3R 19852382 exon CG4662 + chr3R 19853750 3` UTR CG4662 + chr3R 19855118 exon Ire1 - chr3R_7_19850001 chr3R_19850001 RAL-703 1580 chr3R 19890219 19890254 chr3R 19890383 19890416 7 163 2.5 6.0 4.2 1.3 197 chr3R 19890219 intergenic CG4733 + chr3R 19890318 intergenic CG4733 + chr3R 19890416 intergenic CG4733 + chr3R_7_19890001 chr3R_19890001 RAL-703 1581 chr3R 19908283 19908302 chr3R 19908375 19908404 4 100 0.0 4.5 2.2 1.2 121 chr3R 19908283 intron RhoGAP92B + chr3R 19908344 intron RhoGAP92B + chr3R 19908404 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_4_19905001 chr3R_19905001 RAL-703 1582 chr3R 19963602 19963828 chr3R 19963708 19963965 7 117 0.5 0.5 0.5 4.7 363 chr3R 19963602 intron Hs6st - chr3R 19963784 intron Hs6st - chr3R 19963965 intron Hs6st - chr3R_7_19960001 chr3R_19960001 RAL-703 1583 chr3R 19970645 19970690 chr3R 19971019 19971053 6 372 3.0 2.0 2.5 1.7 408 chr3R 19970645 intron Hs6st - chr3R 19970849 intron Hs6st - chr3R 19971053 intron Hs6st - chr3R_6_19970001 chr3R_19970001 RAL-703 1584 chr3R 20109521 20109567 chr3R 20114743 20114777 copia 5 5217 1.0 1.5 1.2 2.3 5256 chr3R 20109521 intergenic not near genes chr3R 20112149 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-703 1585 chr3R 20156687 20156716 chr3R 20165867 20165875 roo 4 9180 3.5 2.0 2.8 1.1 9188 chr3R 20156687 intergenic not near genes chr3R 20161281 intergenic not near genes chr3R 20165875 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-703 1586 chr3R 20197774 20197808 chr3R 20197875 20197901 7 91 2.0 3.5 2.8 1.8 127 chr3R 20197774 intergenic not near genes chr3R 20197838 intergenic not near genes chr3R 20197901 intergenic not near genes chr3R_7_20195001 chr3R_20195001 RAL-703 1587 chr3R 20205543 20205575 chr3R 20205685 20205717 5 142 3.0 3.0 3.0 1.2 174 chr3R 20205543 intron Nlg4 + chr3R 20205630 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-703 1588 chr3R 20230326 20230346 chr3R 20230427 20230447 5 101 1.5 2.0 1.8 1.8 121 chr3R 20230326 intron Nlg4 + chr3R 20230386 intron Nlg4 + chr3R 20230447 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-703 1589 chr3R 20245261 20245299 chr3R 20248889 20248930 F-element 5 3627 3.0 2.0 2.5 1.4 3669 chr3R 20245261 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248930 intergenic not near genes chr3R_5_20245001 chr3R_20245001 RAL-703 1590 chr3R 20256845 20256867 chr3R 20256943 20256965 4 98 0.0 5.5 2.8 1.1 120 chr3R 20256845 intron cic + chr3R 20256905 intron cic + chr3R 20256965 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-703 1591 chr3R 20266502 20266546 chr3R 20272992 20273037 Burdock 16 6488 0.5 1.0 0.8 8.9 6535 chr3R 20266502 intron cic + chr3R 20269770 intron cic + chr3R 20273037 intron cic + chr3R_16_20265001 chr3R_20265001 RAL-703 1592 chr3R 20330983 20331018 chr3R 20331489 20331524 roo 4 506 3.5 1.0 2.2 1.2 541 chr3R 20330983 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331524 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-703 1593 chr3R 20391739 20391760 chr3R 20391854 20391872 4 114 7.0 7.0 7.0 0.5 133 chr3R 20391739 intron Gfrl - chr3R 20391806 intron Gfrl - chr3R 20391872 intron Gfrl - chr3R_4_20390001 chr3R_20390001 RAL-703 1594 chr3R 20448086 20448116 chr3R 20448181 20448210 4 96 5.0 4.5 4.8 0.7 124 chr3R 20448086 intron Gfrl - chr3R 20448148 intron Gfrl - chr3R 20448210 intron Gfrl - chr3R_4_20445001 chr3R_20445001 RAL-703 1595 chr3R 20458494 20458508 chr3R 20458557 20458595 4 74 3.5 4.5 4.0 0.8 101 chr3R 20458494 intron Gfrl - chr3R 20458544 intron Gfrl - chr3R 20458595 intron Gfrl - chr3R_4_20455001 chr3R_20455001 RAL-703 1596 chr3R 20506585 20506616 chr3R 20507393 20507408 BS 7 816 1.0 4.5 2.8 1.8 823 chr3R 20506585 intergenic Or92a + chr3R 20506996 intergenic CG4288 - chr3R 20507408 3` UTR CG4288 - chr3R_7_20505001 chr3R_20505001 RAL-703 1597 chr3R 20594464 20594512 chr3R 20594574 20594606 6 101 1.0 0.0 0.5 4.0 142 chr3R 20594464 intron bon + chr3R 20594535 intron bon + chr3R 20594606 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-703 1598 chr3R 20596190 20596215 chr3R 20596297 20596322 4 107 3.0 5.0 4.0 0.8 132 chr3R 20596190 intron bon + chr3R 20596256 intron bon + chr3R 20596322 intron bon + chr3R_4_20595001 chr3R_20595001 RAL-703 1599 chr3R 20730928 20730954 chr3R 20731038 20731056 7 109 2.5 0.5 1.5 2.8 128 chr3R 20730928 intergenic not near genes chr3R 20730992 intergenic not near genes chr3R 20731056 intergenic not near genes chr3R_7_20730001 chr3R_20730001 RAL-703 1600 chr3R 20787423 20787456 chr3R 20787533 20787566 9 109 3.0 4.0 3.5 2.0 143 chr3R 20787423 intron Syp + chr3R 20787494 intron Syp + chr3R 20787566 intron Syp + chr3R_9_20785001 chr3R_20785001 RAL-703 1601 chr3R 20870244 20870282 chr3R 20870348 20870369 8 100 6.0 9.0 7.5 0.9 125 chr3R 20870244 intergenic not near genes chr3R 20870306 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_8_20870001 chr3R_20870001 RAL-703 1602 chr3R 20994932 20994975 chr3R 20995038 20995054 5 91 2.0 2.0 2.0 1.7 122 chr3R 20994932 intron Calx + chr3R 20994993 intron Calx + chr3R 20995054 intron Calx + chr3R_5_20990001 chr3R_20990001 RAL-703 1603 chr3R 21020384 21020416 chr3R 21020480 21020512 10 96 1.5 2.5 2.0 3.3 128 chr3R 21020384 3` UTR Rlip + chr3R 21020448 3` UTR Rlip + chr3R 21020512 3` UTR Rlip + chr3R_10_21020001 chr3R_21020001 RAL-703 1604 chr3R 21041085 21041125 chr3R 21041258 21041298 6 173 4.5 5.5 5.0 1.0 213 chr3R 21041085 exon Dhc93AB - chr3R 21041192 intron Dhc93AB - chr3R 21041298 intron Dhc93AB - chr3R_6_21040001 chr3R_21040001 RAL-703 1605 chr3R 21074816 21074826 chr3R 21075027 21075067 5 229 1.0 2.0 1.5 2.0 251 chr3R 21074816 intron dmrt93B + chr3R 21074942 intron dmrt93B + chr3R 21075067 intron dmrt93B + chr3R_5_21070001 chr3R_21070001 RAL-703 1606 chr3R 21076298 21076327 chr3R 21076396 21076423 4 92 0.0 1.0 0.5 2.7 125 chr3R 21076298 exon dmrt93B + chr3R 21076360 intron dmrt93B + chr3R 21076423 intron dmrt93B + chr3R_4_21075001 chr3R_21075001 RAL-703 1607 chr3R 21132611 21132620 chr3R 21132714 21132720 4 102 7.0 0.0 3.5 0.9 109 chr3R 21132611 3` UTR Ice2 + chr3R 21132666 3` UTR Ice2 + chr3R 21132720 3` UTR Ice2 + chr3R_4_21130001 chr3R_21130001 RAL-703 1608 chr3R 21141662 21141687 chr3R 21150156 21150169 Tirant 11 8496 6.0 1.5 3.8 2.3 8507 chr3R 21141662 intron SNF4Agamma + chr3R 21145916 intron SNF4Agamma + chr3R 21150169 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-703 1609 chr3R 21154553 21154584 chr3R 21154786 21154819 7 234 4.0 6.0 5.0 1.2 266 chr3R 21154553 intron SNF4Agamma + chr3R 21154686 intron SNF4Agamma + chr3R 21154819 intron SNF4Agamma + chr3R_7_21150001 chr3R_21150001 RAL-703 1610 chr3R 21239792 21239959 chr3R 21239905 21240032 10 96 0.0 0.0 0.0 10.0 240 chr3R 21239792 intergenic not near genes chr3R 21239912 intergenic not near genes chr3R 21240032 intergenic not near genes chr3R_10_21235001 chr3R_21235001 RAL-703 1611 chr3R 21295306 21295353 chr3R 21295419 21295469 11 112 3.0 2.5 2.8 2.9 163 chr3R 21295306 intergenic not near genes chr3R 21295388 intergenic not near genes chr3R 21295469 intergenic not near genes chr3R_11_21295001 chr3R_21295001 RAL-703 1612 chr3R 21385917 21385950 chr3R 21386014 21386047 6 97 0.0 4.0 2.0 2.0 130 chr3R 21385917 intergenic not near genes chr3R 21385982 intergenic not near genes chr3R 21386047 intergenic not near genes chr3R_6_21385001 chr3R_21385001 RAL-703 1613 chr3R 21471998 21472027 chr3R 21472098 21472128 6 96 4.5 3.0 3.8 1.2 130 chr3R 21471998 intergenic not near genes chr3R 21472063 intergenic not near genes chr3R 21472128 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-703 1614 chr3R 21475988 21476020 chr3R 21476078 21476128 9 99 2.5 0.5 1.5 3.6 140 chr3R 21475988 intergenic not near genes chr3R 21476058 intergenic not near genes chr3R 21476128 intergenic not near genes chr3R_9_21475001 chr3R_21475001 RAL-703 1615 chr3R 21494444 21494471 chr3R 21494667 21494712 9 237 3.0 3.0 3.0 2.2 268 chr3R 21494444 intergenic not near genes chr3R 21494578 intergenic not near genes chr3R 21494712 intergenic not near genes chr3R_9_21490001 chr3R_21490001 RAL-703 1616 chr3R 21519982 21520120 chr3R 21520103 21520219 6 116 0.0 0.0 0.0 6.0 237 chr3R 21519982 intergenic not near genes chr3R 21520100 intergenic not near genes chr3R 21520219 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-703 1617 chr3R 21554034 21554079 chr3R 21554161 21554207 9 118 2.5 4.5 3.5 2.0 173 chr3R 21554034 intron slou - chr3R 21554120 intron slou - chr3R 21554207 intron slou - chr3R_9_21550001 chr3R_21550001 RAL-703 1618 chr3R 21582978 21583002 chr3R 21583097 21583118 8 119 2.0 1.0 1.5 3.2 140 chr3R 21582978 intron InR - chr3R 21583048 intron InR - chr3R 21583118 intron InR - chr3R_8_21580001 chr3R_21580001 RAL-703 1619 chr3R 21624095 21624111 chr3R 21624208 21624225 5 114 3.5 7.5 5.5 0.8 130 chr3R 21624095 intron E2f - chr3R 21624160 intron E2f - chr3R 21624225 intron E2f - chr3R_5_21620001 chr3R_21620001 RAL-703 1620 chr3R 21761104 21761151 chr3R 21768514 21768539 mdg1 12 7406 7.0 4.0 5.5 1.8 7435 chr3R 21761104 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768539 exon CG42335 + chr3R_12_21760001 chr3R_21760001 RAL-703 1621 chr3R 21907534 21907534 chr3R 28831799 28831803 27 6924268 13.0 13.5 13.2 1.9 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-703 1622 chr3R 21907535 21907535 chr3R 28831801 28831802 37 6924266 13.0 14.0 13.5 2.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-703 1623 chr3R 21907536 21907536 chr3R 28831801 28831802 40 6924266 13.0 14.0 13.5 2.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_40_25365001 chr3R_25365001 RAL-703 1624 chr3R 21907536 21907536 chr3R 29013337 29013340 4 7105803 13.0 12.0 12.5 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-703 1625 chr3R 21944374 21944399 chr3R 21944474 21944488 4 92 6.0 8.5 7.2 0.5 114 chr3R 21944374 intergenic not near genes chr3R 21944431 intergenic not near genes chr3R 21944488 intergenic not near genes chr3R_4_21940001 chr3R_21940001 RAL-703 1626 chr3R 21983115 21983164 chr3R 21983216 21983264 10 90 4.5 2.0 3.2 2.4 149 chr3R 21983115 intron Eip93F + chr3R 21983190 intron Eip93F + chr3R 21983264 intron Eip93F + chr3R_10_21980001 chr3R_21980001 RAL-703 1627 chr3R 22084609 22084622 chr3R 22084708 22084731 4 104 0.0 3.0 1.5 1.6 122 chr3R 22084609 intergenic not near genes chr3R 22084670 intergenic not near genes chr3R 22084731 intergenic not near genes chr3R_4_22080001 chr3R_22080001 RAL-703 1628 chr3R 22117410 22117436 chr3R 22117500 22117532 4 92 1.5 1.0 1.2 1.8 122 chr3R 22117410 intergenic Ir94b -,Ir94c - chr3R 22117471 intergenic Ir94c -,Ir94b - chr3R 22117532 intergenic Ir94c -,Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-703 1629 chr3R 22234697 22234709 chr3R 22236003 22236006 pogo 5 1322 2.0 3.0 2.5 1.4 1309 chr3R 22234697 intron SKIP + chr3R 22235352 intron SKIP + chr3R 22236006 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-703 1630 chr3R 22322581 22322621 chr3R 22322700 22322740 8 116 1.5 2.0 1.8 2.9 159 chr3R 22322581 intron CG34377 - chr3R 22322660 intron CG34377 - chr3R 22322740 intron CG34377 - chr3R_8_22320001 chr3R_22320001 RAL-703 1631 chr3R 22370390 22370405 chr3R 22370499 22370509 5 108 7.0 6.5 6.8 0.6 119 chr3R 22370390 intron PyK + chr3R 22370450 intron PyK + chr3R 22370509 intron PyK + chr3R_5_22370001 chr3R_22370001 RAL-703 1632 chr3R 22370406 22370436 chr3R 22370495 22370544 5 104 3.0 5.5 4.2 1.0 138 chr3R 22370406 intron PyK + chr3R 22370475 intron PyK + chr3R 22370544 intron PyK + chr3R_5_22370001 chr3R_22370001 RAL-703 1633 chr3R 22433088 22433100 chr3R 22433194 22433202 4 112 4.0 3.5 3.8 0.8 114 chr3R 22433088 intron CG13847 - chr3R 22433145 intron CG13847 - chr3R 22433202 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-703 1634 chr3R 22450525 22450566 chr3R 22453185 22453202 NOF 9 2653 4.5 4.0 4.2 1.7 2677 chr3R 22450525 intron CG34376 + chr3R 22451864 intron CG34376 + chr3R 22453202 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-703 1635 chr3R 22507791 22507819 chr3R 22507885 22507923 4 101 1.5 4.0 2.8 1.1 132 chr3R 22507791 intron Octbeta1R + chr3R 22507857 intron Octbeta1R + chr3R 22507923 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-703 1636 chr3R 22538432 22538455 chr3R 22538537 22538560 8 102 4.0 4.0 4.0 1.6 128 chr3R 22538432 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538560 intron CG5326 - chr3R_8_22535001 chr3R_22535001 RAL-703 1637 chr3R 22538459 22538465 chr3R 22538536 22538570 6 89 3.5 4.0 3.8 1.2 111 chr3R 22538459 intron CG5326 - chr3R 22538514 intron CG5326 - chr3R 22538570 intron CG5326 - chr3R_6_22535001 chr3R_22535001 RAL-703 1638 chr3R 22794498 22794548 chr3R 22794594 22794642 12 94 1.0 3.5 2.2 3.8 144 chr3R 22794498 intergenic CG7029 + chr3R 22794570 intergenic not near genes chr3R 22794642 intergenic not near genes chr3R_12_22790001 chr3R_22790001 RAL-703 1639 chr3R 22835799 22835850 chr3R 22835900 22835947 6 98 1.0 4.0 2.5 1.7 148 chr3R 22835799 intergenic not near genes chr3R 22835873 intergenic not near genes chr3R 22835947 intergenic not near genes chr3R_6_22835001 chr3R_22835001 RAL-703 1640 chr3R 22842779 22842794 chr3R 22842847 22842885 10 84 2.5 3.0 2.8 2.6 106 chr3R 22842779 intergenic not near genes chr3R 22842832 intergenic not near genes chr3R 22842885 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-703 1641 chr3R 22927688 22927724 chr3R 22927786 22927786 8 97 4.0 5.5 4.8 1.4 98 chr3R 22927688 intron klg + chr3R 22927737 intron klg + chr3R 22927786 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-703 1642 chr3R 23090411 23090434 chr3R 23090497 23090535 6 91 3.0 7.0 5.0 1.0 124 chr3R 23090411 intron CG13830 - chr3R 23090473 intron CG13830 - chr3R 23090535 intron CG13830 - chr3R_6_23090001 chr3R_23090001 RAL-703 1643 chr3R 23100138 23100433 chr3R 23100244 23100515 13 97 3.5 2.5 3.0 3.2 377 chr3R 23100138 intron,exon CG13830 -,CG6738 + chr3R 23100326 intron,exon CG13830 -,CG6738 + chr3R 23100515 intron,exon CG13830 -,CG6738 + chr3R_13_23100001 chr3R_23100001 RAL-703 1644 chr3R 23211960 23211981 chr3R 23212058 23212079 4 97 2.5 1.0 1.8 1.4 119 chr3R 23211960 intron cnc - chr3R 23212020 intron cnc - chr3R 23212079 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-703 1645 chr3R 23245969 23246022 chr3R 23246071 23246094 10 94 3.0 3.5 3.2 2.4 125 chr3R 23245969 intron CG4467 - chr3R 23246032 intron CG4467 - chr3R 23246094 intron CG4467 - chr3R_10_23245001 chr3R_23245001 RAL-703 1646 chr3R 23338874 23338910 chr3R 23338970 23338981 7 92 4.5 4.5 4.5 1.3 107 chr3R 23338874 intron pnt - chr3R 23338928 intron pnt - chr3R 23338981 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-703 1647 chr3R 23363655 23363700 chr3R 23363761 23363805 16 105 6.5 4.0 5.2 2.6 150 chr3R 23363655 intergenic CG4408 - chr3R 23363730 intergenic CG4408 - chr3R 23363805 intergenic CG4408 - chr3R_16_23360001 chr3R_23360001 RAL-703 1648 chr3R 23421954 23422011 chr3R 23422059 23422108 16 101 2.0 2.0 2.0 5.3 154 chr3R 23421954 intron CG4374 - chr3R 23422031 intron CG4374 - chr3R 23422108 intron CG4374 - chr3R_16_23420001 chr3R_23420001 RAL-703 1649 chr3R 23517008 23517046 chr3R 23517304 23517343 5 292 2.5 1.0 1.8 1.8 335 chr3R 23517008 intron Irk2 - chr3R 23517176 intron Irk2 - chr3R 23517343 intron Irk2 - chr3R_5_23515001 chr3R_23515001 RAL-703 1650 chr3R 23558395 23558421 chr3R 23560189 23560222 Bari1 9 1797 3.0 3.0 3.0 2.2 1827 chr3R 23558395 intron beat-IV + chr3R 23559308 intron beat-IV + chr3R 23560222 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-703 1651 chr3R 23564455 23564472 chr3R 23564586 23564636 6 151 1.0 1.5 1.2 2.7 181 chr3R 23564455 intron beat-IV + chr3R 23564546 intron beat-IV + chr3R 23564636 intron beat-IV + chr3R_6_23560001 chr3R_23560001 RAL-703 1652 chr3R 23676784 23676821 chr3R 23676912 23676949 9 127 4.0 2.5 3.2 2.1 165 chr3R 23676784 intergenic not near genes chr3R 23676866 intergenic CG13822 + chr3R 23676949 intergenic CG13822 + chr3R_9_23675001 chr3R_23675001 RAL-703 1653 chr3R 23684679 23684725 chr3R 23685184 23685206 roo 7 493 2.0 4.5 3.2 1.7 527 chr3R 23684679 exon CG18754 + chr3R 23684942 intron CG18754 + chr3R 23685206 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-703 1654 chr3R 23784895 23785179 chr3R 23784980 23785277 14 87 8.5 5.5 7.0 1.8 382 chr3R 23784895 intron mbc + chr3R 23785086 intron mbc + chr3R 23785277 intron mbc + chr3R_14_23785001 chr3R_23785001 RAL-703 1655 chr3R 23893767 23893817 chr3R 23893883 23893938 7 113 3.0 2.0 2.5 2.0 171 chr3R 23893767 intergenic tbrd-1 -,sba - chr3R 23893852 intergenic sba -,tbrd-1 - chr3R 23893938 intergenic sba - chr3R_7_23890001 chr3R_23890001 RAL-703 1656 chr3R 23944900 23944912 chr3R 23945005 23945017 4 105 4.0 3.5 3.8 0.8 117 chr3R 23944900 intron CG12268 - chr3R 23944958 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-703 1657 chr3R 23944918 23944929 chr3R 23944996 23945034 6 98 1.5 3.0 2.2 1.9 116 chr3R 23944918 intron CG12268 - chr3R 23944976 intron CG12268 - chr3R 23945034 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-703 1658 chr3R 24015432 24015447 chr3R 24015498 24015526 4 72 0.0 1.5 0.8 2.2 94 chr3R 24015432 intron KrT95D - chr3R 24015479 intron KrT95D - chr3R 24015526 intron KrT95D - chr3R_4_24015001 chr3R_24015001 RAL-703 1659 chr3R 24072088 24072110 chr3R 24072530 24072567 jockey 4 452 1.5 2.0 1.8 1.4 479 chr3R 24072088 intron 4EHP - chr3R 24072328 intron 4EHP - chr3R 24072567 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-703 1660 chr3R 24076916 24076945 chr3R 24078394 24078432 hobo 8 1480 1.0 5.5 3.2 1.9 1516 chr3R 24076916 intron 4EHP - chr3R 24077674 intron 4EHP - chr3R 24078432 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-703 1661 chr3R 24199728 24199773 chr3R 24199818 24199870 10 97 2.5 3.5 3.0 2.5 142 chr3R 24199728 intron twin - chr3R 24199799 intron twin - chr3R 24199870 intron twin - chr3R_10_24195001 chr3R_24195001 RAL-703 1662 chr3R 24207226 24207239 chr3R 24212305 24212310 flea 6 5087 6.0 6.5 6.2 0.8 5084 chr3R 24207226 intron twin - chr3R 24209768 intron twin - chr3R 24212310 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-703 1663 chr3R 24425857 24425885 chr3R 24426075 24426103 4 218 1.0 3.0 2.0 1.3 246 chr3R 24425857 intron nAChRalpha1 - chr3R 24425980 intron nAChRalpha1 - chr3R 24426103 intron nAChRalpha1 - chr3R_4_24425001 chr3R_24425001 RAL-703 1664 chr3R 24431581 24431625 chr3R 24431680 24431696 10 94 1.5 0.0 0.8 5.6 115 chr3R 24431581 intron nAChRalpha1 - chr3R 24431638 intron nAChRalpha1 - chr3R 24431696 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-703 1665 chr3R 24433467 24433499 chr3R 24433555 24433598 5 95 0.5 3.0 1.8 1.8 131 chr3R 24433467 intron nAChRalpha1 - chr3R 24433532 intron nAChRalpha1 - chr3R 24433598 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-703 1666 chr3R 24434220 24434265 chr3R 24434317 24434363 7 98 2.0 3.0 2.5 2.0 143 chr3R 24434220 intron nAChRalpha1 - chr3R 24434292 intron nAChRalpha1 - chr3R 24434363 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-703 1667 chr3R 24439295 24439344 chr3R 24439427 24439443 7 126 0.5 4.0 2.2 2.2 148 chr3R 24439295 intron nAChRalpha1 - chr3R 24439369 intron nAChRalpha1 - chr3R 24439443 intron nAChRalpha1 - chr3R_7_24435001 chr3R_24435001 RAL-703 1668 chr3R 24493269 24493293 chr3R 24493516 24493528 BS 4 245 7.0 5.5 6.2 0.6 259 chr3R 24493269 intergenic not near genes chr3R 24493398 intergenic not near genes chr3R 24493528 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-703 1669 chr3R 24527795 24527832 chr3R 24527905 24527943 5 106 1.5 1.0 1.2 2.3 148 chr3R 24527795 intergenic CG6607 +,CG13618 + chr3R 24527869 intergenic CG6607 +,CG13618 + chr3R 24527943 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-703 1670 chr3R 24612867 24612907 chr3R 24612962 24613005 8 96 4.0 2.5 3.2 1.9 138 chr3R 24612867 intron mld + chr3R 24612936 intron mld + chr3R 24613005 intron mld + chr3R_8_24610001 chr3R_24610001 RAL-703 1671 chr3R 24624368 24624393 chr3R 24624463 24624500 5 106 2.0 2.0 2.0 1.7 132 chr3R 24624368 intron Syx18 - chr3R 24624434 intron Syx18 - chr3R 24624500 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-703 1672 chr3R 24667593 24667629 chr3R 24667689 24667718 5 95 3.5 0.0 1.8 1.8 125 chr3R 24667593 intron slo + chr3R 24667656 intron slo + chr3R 24667718 intron slo + chr3R_5_24665001 chr3R_24665001 RAL-703 1673 chr3R 24670145 24670177 chr3R 24670248 24670281 7 99 1.0 1.0 1.0 3.5 136 chr3R 24670145 intron slo + chr3R 24670213 intron slo + chr3R 24670281 intron slo + chr3R_7_24670001 chr3R_24670001 RAL-703 1674 chr3R 24730075 24730112 chr3R 24732468 24732483 Doc 8 2386 3.5 0.5 2.0 2.7 2408 chr3R 24730075 intron tok + chr3R 24731279 intron tok + chr3R 24732483 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-703 1675 chr3R 24789976 24790009 chr3R 24790141 24790174 7 165 2.5 3.0 2.8 1.8 198 chr3R 24789976 intron,5` UTR Ets96B +,CG13634 - chr3R 24790075 intron,5` UTR Ets96B +,CG13634 - chr3R 24790174 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-703 1676 chr3R 24927134 24927153 chr3R 24931920 24931954 Doc 9 4805 5.0 2.0 3.5 2.0 4820 chr3R 24927134 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-703 1677 chr3R 24974899 24974929 chr3R 24974994 24975028 7 96 3.5 5.0 4.2 1.3 129 chr3R 24974899 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975028 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-703 1678 chr3R 25027520 25027564 chr3R 25027753 25027796 9 232 1.5 2.0 1.8 3.2 276 chr3R 25027520 intron Hr96 + chr3R 25027658 intron Hr96 + chr3R 25027796 intron Hr96 + chr3R_9_25025001 chr3R_25025001 RAL-703 1679 chr3R 25072746 25072780 chr3R 25072858 25072892 7 112 3.0 4.0 3.5 1.6 146 chr3R 25072746 3` UTR CG9996 - chr3R 25072819 3` UTR CG9996 - chr3R 25072892 exon CG9996 - chr3R_7_25070001 chr3R_25070001 RAL-703 1680 chr3R 25166237 25166362 chr3R 25166335 25166457 4 96 0.5 0.5 0.5 2.7 220 chr3R 25166237 intergenic not near genes chr3R 25166347 intergenic not near genes chr3R 25166457 intergenic not near genes chr3R_4_25165001 chr3R_25165001 RAL-703 1681 chr3R 25200528 25200561 chr3R 25200628 25200653 7 97 1.5 5.5 3.5 1.6 125 chr3R 25200528 intron,intron Cad96Ca -,CG13654 + chr3R 25200590 intron,intron Cad96Ca -,CG13654 + chr3R 25200653 intron,intron Cad96Ca -,CG13654 + chr3R_7_25200001 chr3R_25200001 RAL-703 1682 chr3R 25302133 25302183 chr3R 25302329 25302381 7 201 17.5 14.5 16.0 0.4 248 chr3R 25302133 exon CG13659 + chr3R 25302257 exon CG13659 + chr3R 25302381 intergenic CG13659 +,CG31370 + chr3R_7_25300001 chr3R_25300001 RAL-703 1683 chr3R 25368454 25368481 chr3R 25368592 25368619 4 136 1.0 0.0 0.5 2.7 165 chr3R 25368454 intron Fur1 - chr3R 25368536 intron Fur1 - chr3R 25368619 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-703 1684 chr3R 25411792 25411798 chr3R 25411884 25411915 5 114 0.5 2.0 1.2 2.3 123 chr3R 25411792 intron Fur1 - chr3R 25411854 intron Fur1 - chr3R 25411915 intron Fur1 - chr3R_5_25410001 chr3R_25410001 RAL-703 1685 chr3R 25544840 25544870 chr3R 25544957 25544987 4 116 1.0 0.5 0.8 2.2 147 chr3R 25544840 intron msi + chr3R 25544914 intron msi + chr3R 25544987 intron msi + chr3R_4_25540001 chr3R_25540001 RAL-703 1686 chr3R 25705410 25705454 chr3R 25705519 25705564 14 107 3.0 3.5 3.2 3.3 154 chr3R 25705410 intron LpR2 - chr3R 25705487 intron LpR2 - chr3R 25705564 intron LpR2 - chr3R_14_25705001 chr3R_25705001 RAL-703 1687 chr3R 25725814 25725860 chr3R 25734993 25735039 roo 4 9180 1.0 2.5 1.8 1.4 9225 chr3R 25725814 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735039 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-703 1688 chr3R 25738635 25738664 chr3R 25738738 25738772 4 106 1.5 1.5 1.5 1.6 137 chr3R 25738635 intron LpR2 - chr3R 25738704 intron LpR2 - chr3R 25738772 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-703 1689 chr3R 25779325 25779356 chr3R 25779651 25779686 9 328 0.5 2.5 1.5 3.6 361 chr3R 25779325 intergenic not near genes chr3R 25779506 intergenic not near genes chr3R 25779686 intergenic not near genes chr3R_9_25775001 chr3R_25775001 RAL-703 1690 chr3R 25796521 25796566 chr3R 25796644 25796691 7 123 2.0 1.5 1.8 2.5 170 chr3R 25796521 intergenic CR43847 - chr3R 25796606 3` UTR CR43847 - chr3R 25796691 3` UTR CR43847 - chr3R_7_25795001 chr3R_25795001 RAL-703 1691 chr3R 25832681 25832720 chr3R 25841879 25841922 roo 4 9191 4.5 5.0 4.8 0.7 9241 chr3R 25832681 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841922 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-703 1692 chr3R 25843622 25843658 chr3R 25843771 25843796 4 147 2.5 2.0 2.2 1.2 174 chr3R 25843622 intergenic CR45653 + chr3R 25843709 intergenic CR45653 + chr3R 25843796 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-703 1693 chr3R 26138871 26138891 chr3R 26139436 26139458 4 566 5.5 4.0 4.8 0.7 587 chr3R 26138871 intergenic not near genes chr3R 26139164 intergenic not near genes chr3R 26139458 intergenic not near genes chr3R_4_26135001 chr3R_26135001 RAL-703 1694 chr3R 26148670 26148722 chr3R 26148814 26148849 16 139 4.5 4.5 4.5 2.9 179 chr3R 26148670 intergenic not near genes chr3R 26148760 intergenic not near genes chr3R 26148849 intergenic not near genes chr3R_16_26145001 chr3R_26145001 RAL-703 1695 chr3R 26235476 26235517 chr3R 26235573 26235605 6 89 3.5 3.5 3.5 1.3 129 chr3R 26235476 5` UTR CR42745 + chr3R 26235540 5` UTR CR42745 + chr3R 26235605 5` UTR CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-703 1696 chr3R 26256006 26256034 chr3R 26256085 26256135 4 95 2.0 4.0 3.0 1.0 129 chr3R 26256006 intron Ald - chr3R 26256070 intron Ald - chr3R 26256135 intron Ald - chr3R_4_26255001 chr3R_26255001 RAL-703 1697 chr3R 26265799 26265842 chr3R 26265902 26265950 7 105 2.5 1.5 2.0 2.3 151 chr3R 26265799 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265950 intron CG6154 + chr3R_7_26265001 chr3R_26265001 RAL-703 1698 chr3R 26294708 26294749 chr3R 26294805 26294847 8 98 1.0 3.5 2.2 2.5 139 chr3R 26294708 intergenic not near genes chr3R 26294778 intergenic not near genes chr3R 26294847 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-703 1699 chr3R 26376308 26376348 chr3R 26385488 26385525 roo 9 9177 4.5 0.0 2.2 2.8 9217 chr3R 26376308 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385525 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-703 1700 chr3R 26510502 26510519 chr3R 26519580 26519599 roo 8 9078 3.0 3.0 3.0 2.0 9097 chr3R 26510502 intron plum - chr3R 26515050 intron plum - chr3R 26519599 intron,5` UTR plum -,CR45226 + chr3R_8_26515001 chr3R_26515001 RAL-703 1701 chr3R 26540983 26541025 chr3R 26541083 26541124 6 94 1.0 4.0 2.5 1.7 141 chr3R 26540983 intron scrib + chr3R 26541054 intron scrib + chr3R 26541124 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-703 1702 chr3R 26542039 26542053 chr3R 26542146 26542152 4 107 6.5 3.5 5.0 0.7 113 chr3R 26542039 intron scrib + chr3R 26542096 intron scrib + chr3R 26542152 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-703 1703 chr3R 26558313 26558351 chr3R 26565645 26565681 Stalker4 6 7325 2.5 5.0 3.8 1.2 7368 chr3R 26558313 intron scrib + chr3R 26561997 intron scrib + chr3R 26565681 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-703 1704 chr3R 26574992 26575039 chr3R 26575091 26575126 12 96 3.0 4.0 3.5 2.7 134 chr3R 26574992 exon scrib + chr3R 26575059 intron scrib + chr3R 26575126 intron scrib + chr3R_12_26575001 chr3R_26575001 RAL-703 1705 chr3R 26607724 26607760 chr3R 26607820 26607840 8 92 4.0 5.0 4.5 1.5 116 chr3R 26607724 5` UTR CR44951 + chr3R 26607782 5` UTR CR44951 + chr3R 26607840 5` UTR CR44951 + chr3R_8_26605001 chr3R_26605001 RAL-703 1706 chr3R 26641625 26641662 chr3R 26641723 26641750 8 96 3.0 1.5 2.2 2.5 125 chr3R 26641625 intergenic not near genes chr3R 26641688 intergenic not near genes chr3R 26641750 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-703 1707 chr3R 26642729 26642757 chr3R 26643140 26643170 jockey 5 413 2.5 3.5 3.0 1.2 441 chr3R 26642729 intergenic not near genes chr3R 26642950 intergenic not near genes chr3R 26643170 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-703 1708 chr3R 26669643 26669674 chr3R 26669745 26669776 5 99 2.0 2.0 2.0 1.7 133 chr3R 26669643 intron beat-VII - chr3R 26669710 intron beat-VII - chr3R 26669776 intron beat-VII - chr3R_5_26665001 chr3R_26665001 RAL-703 1709 chr3R 26688848 26688854 chr3R 26688944 26688952 5 96 1.0 5.0 3.0 1.2 104 chr3R 26688848 intergenic not near genes chr3R 26688900 intergenic not near genes chr3R 26688952 intergenic not near genes chr3R_5_26685001 chr3R_26685001 RAL-703 1710 chr3R 26770226 26770274 chr3R 26770323 26770371 5 95 1.5 2.0 1.8 1.8 145 chr3R 26770226 intergenic CR45563 + chr3R 26770298 intergenic CR45563 + chr3R 26770371 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-703 1711 chr3R 26810537 26810584 chr3R 26811042 26811088 roo 11 502 3.5 3.5 3.5 2.4 551 chr3R 26810537 intron Tl + chr3R 26810812 intron Tl + chr3R 26811088 intron Tl + chr3R_11_26810001 chr3R_26810001 RAL-703 1712 chr3R 26845557 26845584 chr3R 26845650 26845684 7 92 5.0 1.5 3.2 1.7 127 chr3R 26845557 intron Lerp - chr3R 26845620 intron Lerp - chr3R 26845684 intron Lerp - chr3R_7_26845001 chr3R_26845001 RAL-703 1713 chr3R 26852460 26852505 chr3R 26852567 26852594 4 102 0.5 3.5 2.0 1.3 134 chr3R 26852460 intron Lerp - chr3R 26852527 intron Lerp - chr3R 26852594 intron Lerp - chr3R_4_26850001 chr3R_26850001 RAL-703 1714 chr3R 26894901 26894933 chr3R 26895007 26895039 7 103 4.0 2.0 3.0 1.8 138 chr3R 26894901 intron T48 + chr3R 26894970 intron T48 + chr3R 26895039 intron T48 + chr3R_7_26890001 chr3R_26890001 RAL-703 1715 chr3R 27007383 27007436 chr3R 27016538 27016562 roo 10 9149 5.0 2.5 3.8 2.1 9179 chr3R 27007383 intron RYa-R + chr3R 27011972 intron RYa-R + chr3R 27016562 intron RYa-R + chr3R_10_27010001 chr3R_27010001 RAL-703 1716 chr3R 27028704 27028756 chr3R 27028800 27028855 7 96 1.5 1.0 1.2 3.2 151 chr3R 27028704 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028855 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-703 1717 chr3R 27091549 27091564 chr3R 27091648 27091662 4 98 5.0 0.5 2.8 1.1 113 chr3R 27091549 intergenic Cpr97Eb - chr3R 27091606 intergenic Cpr97Eb - chr3R 27091662 intergenic not near genes chr3R_4_27090001 chr3R_27090001 RAL-703 1718 chr3R 27140503 27140538 chr3R 27148133 27148168 412 6 7626 3.5 4.0 3.8 1.2 7665 chr3R 27140503 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148168 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-703 1719 chr3R 27153459 27153505 chr3R 27153557 27153603 12 96 3.0 3.0 3.0 3.0 144 chr3R 27153459 intron Men-b + chr3R 27153531 intron Men-b + chr3R 27153603 intron Men-b + chr3R_12_27150001 chr3R_27150001 RAL-703 1720 chr3R 27292261 27292300 chr3R 27292392 27292429 9 127 4.0 1.5 2.8 2.4 168 chr3R 27292261 intergenic CG3348 - chr3R 27292345 intergenic CG3348 - chr3R 27292429 intergenic CG3348 - chr3R_9_27290001 chr3R_27290001 RAL-703 1721 chr3R 27323800 27323840 chr3R 27323898 27323933 7 97 4.0 2.5 3.2 1.7 133 chr3R 27323800 intergenic not near genes chr3R 27323866 intergenic not near genes chr3R 27323933 intergenic not near genes chr3R_7_27320001 chr3R_27320001 RAL-703 1722 chr3R 27329456 27329495 chr3R 27329552 27329592 4 96 6.0 2.5 4.2 0.8 136 chr3R 27329456 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329592 intergenic CG3330 - chr3R_4_27325001 chr3R_27325001 RAL-703 1723 chr3R 27377451 27377496 chr3R 27377559 27377580 10 99 3.0 2.5 2.8 2.6 129 chr3R 27377451 3` UTR side - chr3R 27377516 3` UTR side - chr3R 27377580 3` UTR side - chr3R_10_27375001 chr3R_27375001 RAL-703 1724 chr3R 27469842 27469882 chr3R 27469961 27470002 11 117 3.0 2.5 2.8 2.9 160 chr3R 27469842 intergenic not near genes chr3R 27469922 intergenic not near genes chr3R 27470002 intergenic not near genes chr3R_11_27465001 chr3R_27465001 RAL-703 1725 chr3R 27521159 27521184 chr3R 27530367 27530413 roo 4 9224 1.5 3.0 2.2 1.2 9254 chr3R 27521159 intron CG12885 + chr3R 27525786 intron CG12885 + chr3R 27530413 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-703 1726 chr3R 27544091 27544116 chr3R 27544293 27544332 8 214 3.0 1.5 2.2 2.5 241 chr3R 27544091 intergenic Gr98b +,Gr98c + chr3R 27544212 intergenic Gr98c +,Gr98b + chr3R 27544332 intergenic Gr98c +,Gr98b + chr3R_8_27540001 chr3R_27540001 RAL-703 1727 chr3R 27595046 27595082 chr3R 27595135 27595185 9 95 2.0 5.0 3.5 2.0 139 chr3R 27595046 intron CG5639 - chr3R 27595116 intron CG5639 - chr3R 27595185 intron CG5639 - chr3R_9_27595001 chr3R_27595001 RAL-703 1728 chr3R 27619289 27619296 chr3R 27619387 27619394 4 98 1.5 2.0 1.8 1.4 105 chr3R 27619289 intron Tusp + chr3R 27619342 intron Tusp + chr3R 27619394 intron Tusp + chr3R_4_27615001 chr3R_27615001 RAL-703 1729 chr3R 27659546 27659592 chr3R 27659650 27659696 8 102 2.0 4.5 3.2 1.9 150 chr3R 27659546 intron Mlc1 - chr3R 27659621 intron Mlc1 - chr3R 27659696 intron Mlc1 - chr3R_8_27655001 chr3R_27655001 RAL-703 1730 chr3R 27706759 27706792 chr3R 27706855 27706886 6 95 2.0 3.0 2.5 1.7 127 chr3R 27706759 intergenic CG12428 -,CG12877 + chr3R 27706822 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 RAL-703 1731 chr3R 27725564 27725597 chr3R 27731026 27731043 I-element 9 5460 2.5 2.0 2.2 2.8 5479 chr3R 27725564 intergenic not near genes chr3R 27728304 intergenic not near genes chr3R 27731043 intergenic not near genes chr3R_9_27725001 chr3R_27725001 RAL-703 1732 chr3R 27779258 27779274 chr3R 27779348 27779374 5 96 3.5 2.5 3.0 1.2 116 chr3R 27779258 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779374 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-703 1733 chr3R 27799918 27799963 chr3R 27800020 27800049 9 97 1.0 2.5 1.8 3.2 131 chr3R 27799918 intron CG34353 - chr3R 27799984 intron CG34353 - chr3R 27800049 intron CG34353 - chr3R_9_27795001 chr3R_27795001 RAL-703 1734 chr3R 27856759 27856779 chr3R 27858246 27858246 hopper2 6 1488 4.0 4.0 4.0 1.2 1487 chr3R 27856759 intron CG34353 - chr3R 27857502 intron CG34353 - chr3R 27858246 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-703 1735 chr3R 27875687 27875722 chr3R 27882762 27882796 297 10 7072 1.5 5.5 3.5 2.2 7109 chr3R 27875687 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882796 intron CG34353 - chr3R_10_27875001 chr3R_27875001 RAL-703 1736 chr3R 27911230 27911254 chr3R 27911327 27911352 4 98 2.0 1.0 1.5 1.6 122 chr3R 27911230 intergenic not near genes chr3R 27911291 intergenic not near genes chr3R 27911352 intergenic not near genes chr3R_4_27910001 chr3R_27910001 RAL-703 1737 chr3R 27973851 27973881 chr3R 27973937 27973982 8 98 1.5 4.0 2.8 2.1 131 chr3R 27973851 intron betaTub97EF - chr3R 27973916 intron betaTub97EF - chr3R 27973982 intron betaTub97EF - chr3R_8_27970001 chr3R_27970001 RAL-703 1738 chr3R 28032620 28032661 chr3R 28032769 28032798 11 146 2.5 5.5 4.0 2.2 178 chr3R 28032620 intron CG34362 + chr3R 28032709 intron CG34362 + chr3R 28032798 intron CG34362 + chr3R_11_28030001 chr3R_28030001 RAL-703 1739 chr3R 28068489 28068528 chr3R 28073935 28073959 I-element 6 5454 0.5 1.5 1.0 3.0 5470 chr3R 28068489 intron CG34362 + chr3R 28071224 intron CG34362 + chr3R 28073959 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-703 1740 chr3R 28126716 28126754 chr3R 28126819 28126842 5 101 3.5 1.5 2.5 1.4 126 chr3R 28126716 intergenic not near genes chr3R 28126779 intergenic not near genes chr3R 28126842 intergenic not near genes chr3R_5_28125001 chr3R_28125001 RAL-703 1741 chr3R 28158941 28158971 chr3R 28159114 28159144 5 169 2.5 2.0 2.2 1.6 203 chr3R 28158941 intron CG34354 + chr3R 28159042 intron CG34354 + chr3R 28159144 intron CG34354 + chr3R_5_28155001 chr3R_28155001 RAL-703 1742 chr3R 28173663 28173701 chr3R 28181113 28181142 mdg1 6 7448 3.5 1.0 2.2 1.9 7479 chr3R 28173663 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181142 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-703 1743 chr3R 28282978 28283004 chr3R 28283627 28283652 5 645 2.5 3.5 3.0 1.2 674 chr3R 28282978 exon CG34436 + chr3R 28283315 exon CG34436 + chr3R 28283652 intergenic CG34437 +,CG34436 + chr3R_5_28280001 chr3R_28280001 RAL-703 1744 chr3R 28302090 28302125 chr3R 28302549 28302584 jockey 9 458 4.0 5.0 4.5 1.6 494 chr3R 28302090 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302584 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-703 1745 chr3R 28319339 28319373 chr3R 28319426 28319473 4 97 0.5 1.0 0.8 2.2 134 chr3R 28319339 3` UTR larp - chr3R 28319406 3` UTR larp - chr3R 28319473 3` UTR larp - chr3R_4_28315001 chr3R_28315001 RAL-703 1746 chr3R 28331489 28331530 chr3R 28331588 28331629 10 96 1.0 1.5 1.2 4.5 140 chr3R 28331489 intron larp - chr3R 28331559 intron larp - chr3R 28331629 intron larp - chr3R_10_28330001 chr3R_28330001 RAL-703 1747 chr3R 28345629 28345667 chr3R 28345725 28345763 5 96 2.0 2.0 2.0 1.7 134 chr3R 28345629 intergenic Moca-cyp + chr3R 28345696 intergenic not near genes chr3R 28345763 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-703 1748 chr3R 28390107 28390119 chr3R 28390196 28390201 4 88 5.5 1.0 3.2 1.0 94 chr3R 28390107 intergenic not near genes chr3R 28390154 intergenic not near genes chr3R 28390201 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-703 1749 chr3R 28390135 28390145 chr3R 28390189 28390243 5 88 5.0 1.0 3.0 1.2 108 chr3R 28390135 intergenic not near genes chr3R 28390189 intergenic not near genes chr3R 28390243 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-703 1750 chr3R 28393682 28393730 chr3R 28393802 28393809 6 112 3.0 2.0 2.5 1.7 127 chr3R 28393682 intergenic not near genes chr3R 28393746 intergenic not near genes chr3R 28393809 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-703 1751 chr3R 28420971 28421011 chr3R 28421370 28421409 9 397 3.0 4.0 3.5 2.0 438 chr3R 28420971 intron beat-VI + chr3R 28421190 intron beat-VI + chr3R 28421409 intron beat-VI + chr3R_9_28420001 chr3R_28420001 RAL-703 1752 chr3R 28424182 28424203 chr3R 28424275 28424305 5 99 3.5 5.5 4.5 0.9 123 chr3R 28424182 intron beat-VI + chr3R 28424244 intron beat-VI + chr3R 28424305 intron beat-VI + chr3R_5_28420001 chr3R_28420001 RAL-703 1753 chr3R 28478503 28478521 chr3R 28478592 28478603 6 92 2.5 5.5 4.0 1.2 100 chr3R 28478503 intergenic not near genes chr3R 28478553 intergenic not near genes chr3R 28478603 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-703 1754 chr3R 28479128 28479130 chr3R 28479245 28479248 4 118 7.0 2.5 4.8 0.7 120 chr3R 28479128 intergenic not near genes chr3R 28479188 intergenic not near genes chr3R 28479248 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-703 1755 chr3R 28479138 28479167 chr3R 28479241 28479283 5 114 4.5 2.0 3.2 1.2 145 chr3R 28479138 intergenic not near genes chr3R 28479210 intergenic not near genes chr3R 28479283 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-703 1756 chr3R 28689967 28690020 chr3R 28690078 28690145 5 120 0.5 0.0 0.2 4.2 178 chr3R 28689967 intron CG9990 + chr3R 28690056 intron CG9990 + chr3R 28690145 intron CG9990 + chr3R_5_28690001 chr3R_28690001 RAL-703 1757 chr3R 28758266 28758279 chr3R 28763902 28763915 roo 4 5636 3.0 0.5 1.8 1.4 5649 chr3R 28758266 intergenic aqrs - chr3R 28761090 intergenic not near genes chr3R 28763915 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-703 1758 chr3R 28792869 28792904 chr3R 28797965 28798016 jockey 6 5102 2.0 4.5 3.2 1.4 5147 chr3R 28792869 intergenic not near genes chr3R 28795442 intergenic not near genes chr3R 28798016 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-703 1759 chr3R 28830872 28830919 chr3R 28830969 28831016 11 97 2.0 3.0 2.5 3.1 144 chr3R 28830872 intron WASp - chr3R 28830944 intron WASp - chr3R 28831016 intron WASp - chr3R_11_28830001 chr3R_28830001 RAL-703 1760 chr3R 21907534 21907536 chr3R 28831799 28831802 45 6924267 13.0 13.5 13.2 3.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-703 1761 chr3R 21907534 21907536 chr3R 29013337 29013339 5 7105804 13.0 12.0 12.5 0.4 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-703 1762 chr3R 21907534 21907536 chr3R 29013340 29013340 17 7105805 13.0 12.0 12.5 1.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_17_25460001 chr3R_25460001 RAL-703 1763 chr3R 29070038 29070073 chr3R 29070136 29070171 6 99 0.5 3.5 2.0 2.0 133 chr3R 29070038 intron CG11873 + chr3R 29070104 intron CG11873 + chr3R 29070171 intron CG11873 + chr3R_6_29070001 chr3R_29070001 RAL-703 1764 chr3R 29128450 29128503 chr3R 29128574 29128591 7 119 1.0 1.5 1.2 3.2 141 chr3R 29128450 intergenic dgt6 -,CG11880 + chr3R 29128520 intergenic dgt6 -,CG11880 + chr3R 29128591 3` UTR dgt6 - chr3R_7_29125001 chr3R_29125001 RAL-703 1765 chr3R 29170499 29170540 chr3R 29170596 29170637 10 95 4.5 6.0 5.2 1.6 138 chr3R 29170499 intron CG11898 + chr3R 29170568 intron CG11898 + chr3R 29170637 intron CG11898 + chr3R_10_29170001 chr3R_29170001 RAL-703 1766 chr3R 29213040 29213080 chr3R 29213143 29213183 12 101 3.5 4.0 3.8 2.5 143 chr3R 29213040 intergenic not near genes chr3R 29213112 intergenic not near genes chr3R 29213183 intergenic not near genes chr3R_12_29210001 chr3R_29210001 RAL-703 1767 chr3R 29227031 29227079 chr3R 29227726 29227770 7 682 4.0 7.0 5.5 1.1 739 chr3R 29227031 intron CG14507 - chr3R 29227400 exon CG14507 - chr3R 29227770 intergenic CG14507 - chr3R_7_29225001 chr3R_29225001 RAL-703 1768 chr3R 29238771 29238783 chr3R 29238905 29238917 4 133 6.0 6.0 6.0 0.6 146 chr3R 29238771 intergenic CG31427 -,CG11951 - chr3R 29238844 3` UTR CG31427 - chr3R 29238917 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-703 1769 chr3R 29239222 29239244 chr3R 29245532 29245552 4 6306 1.5 19.0 10.2 0.4 6330 chr3R 29239222 exon CG31427 - chr3R 29242387 exon CG31445 - chr3R 29245552 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-703 1770 chr3R 29239269 29239278 chr3R 29239536 29239565 5 287 0.0 2.0 1.0 2.5 296 chr3R 29239269 exon CG31427 - chr3R 29239417 exon CG31427 - chr3R 29239565 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-703 1771 chr3R 29256249 29256300 chr3R 29256349 29256391 8 94 1.0 2.0 1.5 3.2 142 chr3R 29256249 intergenic CG45544 +,stg - chr3R 29256320 intergenic CG45544 + chr3R 29256391 intergenic CG45544 + chr3R_8_29255001 chr3R_29255001 RAL-703 1772 chr3R 29356027 29356076 chr3R 29356127 29356172 4 100 1.5 3.0 2.2 1.2 145 chr3R 29356027 intergenic CR45547 - chr3R 29356100 intergenic CR45547 - chr3R 29356172 3` UTR CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-703 1773 chr3R 29359010 29359036 chr3R 29359085 29359133 4 80 5.5 5.5 5.5 0.6 123 chr3R 29359010 intergenic not near genes chr3R 29359072 intergenic not near genes chr3R 29359133 intergenic not near genes chr3R_4_29355001 chr3R_29355001 RAL-703 1774 chr3R 29376341 29376365 chr3R 29376449 29376472 7 107 0.0 1.0 0.5 4.7 131 chr3R 29376341 intergenic not near genes chr3R 29376406 intergenic not near genes chr3R 29376472 intergenic not near genes chr3R_7_29375001 chr3R_29375001 RAL-703 1775 chr3R 29402960 29403000 chr3R 29403075 29403114 6 112 1.5 2.0 1.8 2.1 154 chr3R 29402960 intron Ptp99A + chr3R 29403037 intron Ptp99A + chr3R 29403114 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-703 1776 chr3R 29406611 29406643 chr3R 29407908 29407913 jockey 6 1298 4.0 2.0 3.0 1.5 1302 chr3R 29406611 intron Ptp99A + chr3R 29407262 intron Ptp99A + chr3R 29407913 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-703 1777 chr3R 29411999 29412048 chr3R 29412098 29412098 5 82 3.0 4.5 3.8 1.0 99 chr3R 29411999 intron Ptp99A + chr3R 29412048 intron Ptp99A + chr3R 29412098 intron Ptp99A + chr3R_5_29410001 chr3R_29410001 RAL-703 1778 chr3R 29448658 29448698 chr3R 29448932 29448957 7 267 4.0 0.5 2.2 2.2 299 chr3R 29448658 intron Ptp99A + chr3R 29448808 intron Ptp99A + chr3R 29448957 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-703 1779 chr3R 29449352 29449391 chr3R 29449446 29449488 8 97 1.5 3.5 2.5 2.3 136 chr3R 29449352 intron Ptp99A + chr3R 29449420 intron Ptp99A + chr3R 29449488 intron Ptp99A + chr3R_8_29445001 chr3R_29445001 RAL-703 1780 chr3R 29471989 29472031 chr3R 29472102 29472125 7 108 2.0 4.5 3.2 1.7 136 chr3R 29471989 intron Ptp99A + chr3R 29472057 intron Ptp99A + chr3R 29472125 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-703 1781 chr3R 29539418 29539455 chr3R 29539514 29539531 8 92 4.0 0.0 2.0 2.7 113 chr3R 29539418 intergenic not near genes chr3R 29539474 intergenic not near genes chr3R 29539531 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-703 1782 chr3R 29550237 29550261 chr3R 29550336 29550341 7 96 6.5 3.0 4.8 1.2 104 chr3R 29550237 intergenic not near genes chr3R 29550289 intergenic not near genes chr3R 29550341 intergenic not near genes chr3R_7_29550001 chr3R_29550001 RAL-703 1783 chr3R 29581532 29581554 chr3R 29581633 29581655 7 101 4.0 5.0 4.5 1.3 123 chr3R 29581532 intergenic not near genes chr3R 29581594 intergenic not near genes chr3R 29581655 intergenic not near genes chr3R_7_29580001 chr3R_29580001 RAL-703 1784 chr3R 29624941 29624984 chr3R 29625037 29625079 11 94 4.0 3.5 3.8 2.3 138 chr3R 29624941 intergenic not near genes chr3R 29625010 intergenic not near genes chr3R 29625079 intergenic not near genes chr3R_11_29625001 chr3R_29625001 RAL-703 1785 chr3R 29642505 29642527 chr3R 29642602 29642616 6 96 3.5 4.0 3.8 1.2 111 chr3R 29642505 intron Dop1R2 - chr3R 29642560 intron Dop1R2 - chr3R 29642616 intron Dop1R2 - chr3R_6_29640001 chr3R_29640001 RAL-703 1786 chr3R 29645814 29645852 chr3R 29645914 29645952 10 100 2.0 3.0 2.5 2.9 138 chr3R 29645814 intron Dop1R2 - chr3R 29645883 intron Dop1R2 - chr3R 29645952 intron Dop1R2 - chr3R_10_29645001 chr3R_29645001 RAL-703 1787 chr3R 29738258 29738292 chr3R 29739729 29739779 hobo 7 1479 4.0 3.0 3.5 1.6 1521 chr3R 29738258 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739779 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-703 1788 chr3R 29773865 29773907 chr3R 29773971 29774007 4 107 1.5 0.0 0.8 2.2 142 chr3R 29773865 intron kay + chr3R 29773936 intron kay + chr3R 29774007 intron kay + chr3R_4_29770001 chr3R_29770001 RAL-703 1789 chr3R 29831798 29831842 chr3R 29831900 29831947 9 102 3.5 2.5 3.0 2.2 149 chr3R 29831798 exon Atg16 - chr3R 29831872 intron Atg16 - chr3R 29831947 exon Atg16 - chr3R_9_29830001 chr3R_29830001 RAL-703 1790 chr3R 29882005 29882042 chr3R 29891182 29891219 roo 7 9175 4.5 5.5 5.0 1.2 9214 chr3R 29882005 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891219 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-703 1791 chr3R 29966333 29966382 chr3R 29966622 29966650 5 284 1.5 3.5 2.5 1.4 317 chr3R 29966333 intron TkR99D - chr3R 29966492 intron TkR99D - chr3R 29966650 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-703 1792 chr3R 30082984 30083007 chr3R 30083073 30083101 4 91 3.0 2.5 2.8 1.1 117 chr3R 30082984 intron sima + chr3R 30083042 intron sima + chr3R 30083101 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-703 1793 chr3R 30084846 30084879 chr3R 30086318 30086366 hobo 9 1482 3.0 2.5 2.8 2.4 1520 chr3R 30084846 intron sima + chr3R 30085606 intron sima + chr3R 30086366 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-703 1794 chr3R 30118935 30118960 chr3R 30119014 30119056 10 90 3.0 4.0 3.5 2.2 121 chr3R 30118935 intron sima + chr3R 30118996 intron sima + chr3R 30119056 intron sima + chr3R_10_30115001 chr3R_30115001 RAL-703 1795 chr3R 30206943 30206963 chr3R 30207360 30207362 6 416 6.5 15.5 11.0 0.5 419 chr3R 30206943 intron RpS7 - chr3R 30207152 intron RpS7 - chr3R 30207362 intron,3` UTR RpS7 -,snoRNA:Psi18S-1377c - chr3R_6_30205001 chr3R_30205001 RAL-703 1796 chr3R 30238764 30238787 chr3R 30239928 30239971 1360 6 1177 1.5 3.0 2.2 1.9 1207 chr3R 30238764 intergenic not near genes chr3R 30239368 intergenic not near genes chr3R 30239971 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-703 1797 chr3R 30268224 30268444 chr3R 30268323 30268544 14 93 5.5 2.0 3.8 2.9 320 chr3R 30268224 intergenic not near genes chr3R 30268384 intergenic not near genes chr3R 30268544 intergenic not near genes chr3R_14_30265001 chr3R_30265001 RAL-703 1798 chr3R 30310869 30310924 chr3R 30310972 30311022 8 100 2.0 2.0 2.0 2.7 153 chr3R 30310869 intron hdc + chr3R 30310946 intron hdc + chr3R 30311022 intron hdc + chr3R_8_30310001 chr3R_30310001 RAL-703 1799 chr3R 30317314 30317358 chr3R 30324923 30324970 roo 8 7607 0.5 3.0 1.8 2.9 7656 chr3R 30317314 intron hdc + chr3R 30321142 intron hdc + chr3R 30324970 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-703 1800 chr3R 30330486 30330525 chr3R 30330586 30330590 7 87 1.5 2.0 1.8 2.5 104 chr3R 30330486 intron hdc + chr3R 30330538 intron hdc + chr3R 30330590 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-703 1801 chr3R 30335936 30335981 chr3R 30336213 30336244 5 274 4.0 1.0 2.5 1.4 308 chr3R 30335936 intron hdc + chr3R 30336090 intron hdc + chr3R 30336244 intron hdc + chr3R_5_30335001 chr3R_30335001 RAL-703 1802 chr3R 30375343 30375368 chr3R 30375459 30375485 5 116 2.0 5.0 3.5 1.1 142 chr3R 30375343 intergenic not near genes chr3R 30375414 intergenic not near genes chr3R 30375485 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-703 1803 chr3R 30375529 30375562 chr3R 30383172 30383192 412 6 7640 4.0 4.0 4.0 1.2 7663 chr3R 30375529 intergenic not near genes chr3R 30379360 intergenic not near genes chr3R 30383192 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-703 1804 chr3R 30396200 30396244 chr3R 30404485 30404530 roo 12 8281 5.5 4.5 5.0 2.0 8330 chr3R 30396200 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404530 5` UTR CR45570 + chr3R_12_30400001 chr3R_30400001 RAL-703 1805 chr3R 30456388 30456420 chr3R 30456476 30456520 6 98 0.5 3.0 1.8 2.1 132 chr3R 30456388 intergenic CG2224 - chr3R 30456454 3` UTR CG2224 - chr3R 30456520 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-703 1806 chr3R 30458007 30458044 chr3R 30458095 30458139 12 97 5.0 3.5 4.2 2.3 132 chr3R 30458007 intron CG2224 - chr3R 30458073 intron CG2224 - chr3R 30458139 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-703 1807 chr3R 30480476 30480497 chr3R 30482945 30482985 jockey 12 2481 3.5 7.0 5.2 1.9 2509 chr3R 30480476 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482985 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-703 1808 chr3R 30544720 30544758 chr3R 30544830 30544870 10 110 1.0 1.5 1.2 4.5 150 chr3R 30544720 intron tmod + chr3R 30544795 intron tmod + chr3R 30544870 intron tmod + chr3R_10_30540001 chr3R_30540001 RAL-703 1809 chr3R 30548994 30549027 chr3R 30549102 30549138 5 102 5.0 3.0 4.0 1.0 144 chr3R 30548994 intron tmod + chr3R 30549066 intron tmod + chr3R 30549138 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-703 1810 chr3R 30571679 30571715 chr3R 30571779 30571815 9 98 2.5 1.5 2.0 3.0 136 chr3R 30571679 intron tmod + chr3R 30571747 intron tmod + chr3R 30571815 exon tmod + chr3R_9_30570001 chr3R_30570001 RAL-703 1811 chr3R 30578131 30578174 chr3R 30578228 30578271 10 94 2.5 5.5 4.0 2.0 140 chr3R 30578131 3` UTR tmod + chr3R 30578201 3` UTR tmod + chr3R 30578271 3` UTR tmod + chr3R_10_30575001 chr3R_30575001 RAL-703 1812 chr3R 30620913 30620949 chr3R 30621087 30621124 12 174 1.5 3.5 2.5 3.4 211 chr3R 30620913 intron CG44954 - chr3R 30621018 intron CG44954 - chr3R 30621124 intron CG44954 - chr3R_12_30620001 chr3R_30620001 RAL-703 1813 chr3R 30627606 30627636 chr3R 30627683 30627733 11 88 2.0 4.0 3.0 2.8 127 chr3R 30627606 exon CG2267 - chr3R 30627670 exon CG2267 - chr3R 30627733 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-703 1814 chr3R 30679508 30679547 chr3R 30686995 30687033 blood 7 7486 2.5 3.0 2.8 1.8 7525 chr3R 30679508 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687033 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-703 1815 chr3R 30800385 30800433 chr3R 30800491 30800539 11 105 1.0 5.0 3.0 2.8 154 chr3R 30800385 5` UTR wts - chr3R 30800462 5` UTR wts - chr3R 30800539 5` UTR wts - chr3R_11_30800001 chr3R_30800001 RAL-703 1816 chr3R 30818792 30818836 chr3R 30820377 30820421 1360 12 1583 3.0 6.0 4.5 2.2 1629 chr3R 30818792 intron cindr + chr3R 30819606 intron cindr + chr3R 30820421 intron cindr + chr3R_12_30815001 chr3R_30815001 RAL-703 1817 chr3R 30850228 30850270 chr3R 30850338 30850379 9 111 0.5 2.0 1.2 4.1 151 chr3R 30850228 intergenic not near genes chr3R 30850304 intergenic not near genes chr3R 30850379 intergenic not near genes chr3R_9_30850001 chr3R_30850001 RAL-703 1818 chr3R 30854606 30854654 chr3R 30854711 30854759 9 96 3.0 1.0 2.0 3.0 153 chr3R 30854606 intergenic tll + chr3R 30854682 intergenic tll + chr3R 30854759 intergenic tll + chr3R_9_30850001 chr3R_30850001 RAL-703 1819 chr3R 30921735 30921771 chr3R 30921816 30921851 7 89 3.0 3.0 3.0 1.8 116 chr3R 30921735 intron,5` UTR Ptx1 +,CR44041 + chr3R 30921793 intron,5` UTR Ptx1 +,CR44041 + chr3R 30921851 intron,5` UTR Ptx1 +,CR44041 + chr3R_7_30920001 chr3R_30920001 RAL-703 1820 chr3R 30948057 30948106 chr3R 30948268 30948317 11 206 2.5 3.0 2.8 2.9 260 chr3R 30948057 intergenic not near genes chr3R 30948187 intergenic not near genes chr3R 30948317 intergenic not near genes chr3R_11_30945001 chr3R_30945001 RAL-703 1821 chr3R 30973112 30973161 chr3R 30973293 30973342 12 178 1.0 1.5 1.2 5.5 230 chr3R 30973112 intron 5-HT7 - chr3R 30973227 intron 5-HT7 - chr3R 30973342 intron 5-HT7 - chr3R_12_30970001 chr3R_30970001 RAL-703 1822 chr3R 31042095 31042143 chr3R 31042201 31042250 6 107 4.5 7.0 5.8 0.9 155 chr3R 31042095 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042250 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-703 1823 chr3R 31069633 31069674 chr3R 31069747 31069789 9 110 2.5 5.0 3.8 1.9 156 chr3R 31069633 intron Sox100B + chr3R 31069711 intron Sox100B + chr3R 31069789 intron Sox100B + chr3R_9_31065001 chr3R_31065001 RAL-703 1824 chr3R 31074215 31074237 chr3R 31081832 31081836 springer 5 7614 5.5 0.5 3.0 1.2 7621 chr3R 31074215 intron Sox100B + chr3R 31078026 intron Sox100B + chr3R 31081836 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-703 1825 chr3R 31087108 31087132 chr3R 31087613 31087662 10 522 1.0 0.5 0.8 5.6 554 chr3R 31087108 intergenic not near genes chr3R 31087385 intergenic not near genes chr3R 31087662 intergenic not near genes chr3R_10_31085001 chr3R_31085001 RAL-703 1826 chr3R 31222908 31222931 chr3R 31223011 31223034 5 102 7.5 1.5 4.5 0.9 126 chr3R 31222908 intron CG12054 + chr3R 31222971 intron CG12054 + chr3R 31223034 intron CG12054 + chr3R_5_31220001 chr3R_31220001 RAL-703 1827 chr3R 31222933 31222941 chr3R 31223008 31223015 4 83 6.0 1.0 3.5 0.9 82 chr3R 31222933 intron CG12054 + chr3R 31222974 intron CG12054 + chr3R 31223015 intron CG12054 + chr3R_4_31220001 chr3R_31220001 RAL-703 1828 chr3R 31279367 31279408 chr3R 31285563 31285594 diver 6 6202 1.5 2.0 1.8 2.1 6227 chr3R 31279367 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-703 1829 chr3R 31412696 31412740 chr3R 31412802 31412852 6 110 3.0 1.5 2.2 1.9 156 chr3R 31412696 intron Gprk2 + chr3R 31412774 intron Gprk2 + chr3R 31412852 intron Gprk2 + chr3R_6_31410001 chr3R_31410001 RAL-703 1830 chr3R 31426865 31426910 chr3R 31426976 31427021 11 108 3.0 1.0 2.0 3.7 156 chr3R 31426865 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31427021 intron Gprk2 + chr3R_11_31425001 chr3R_31425001 RAL-703 1831 chr3R 31435351 31435385 chr3R 31435523 31435557 5 172 2.5 4.5 3.5 1.1 206 chr3R 31435351 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435557 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-703 1832 chr3R 31442249 31442291 chr3R 31442354 31442391 11 102 2.5 1.5 2.0 3.7 142 chr3R 31442249 intron Gprk2 + chr3R 31442320 intron Gprk2 + chr3R 31442391 intron Gprk2 + chr3R_11_31440001 chr3R_31440001 RAL-703 1833 chr3R 31448583 31448623 chr3R 31448679 31448685 9 87 5.0 1.5 3.2 2.1 102 chr3R 31448583 intron Gprk2 + chr3R 31448634 intron Gprk2 + chr3R 31448685 intron Gprk2 + chr3R_9_31445001 chr3R_31445001 RAL-703 1834 chr3R 31649093 31649142 chr3R 31649313 31649362 12 218 2.5 4.0 3.2 2.9 269 chr3R 31649093 intron kek6 + chr3R 31649228 intron kek6 + chr3R 31649362 intron kek6 + chr3R_12_31645001 chr3R_31645001 RAL-703 1835 chr3R 31699743 31699753 chr3R 31699797 31699828 6 89 4.0 2.5 3.2 1.4 85 chr3R 31699743 intergenic not near genes chr3R 31699786 intergenic not near genes chr3R 31699828 intergenic not near genes chr3R_6_31695001 chr3R_31695001 RAL-703 1836 chr3R 31829367 31829410 chr3R 31829462 31829503 7 92 6.0 2.0 4.0 1.4 136 chr3R 31829367 intron RhoGAP100F + chr3R 31829435 intron RhoGAP100F + chr3R 31829503 intron RhoGAP100F + chr3R_7_31825001 chr3R_31825001 RAL-703 1837 chr3R 31874834 31874872 chr3R 31874929 31874968 12 94 5.0 2.5 3.8 2.5 134 chr3R 31874834 intron heph - chr3R 31874901 intron heph - chr3R 31874968 intron heph - chr3R_12_31870001 chr3R_31870001 RAL-703 1838 chr3R 31885656 31885701 chr3R 31885752 31885794 11 94 2.0 3.5 2.8 2.9 138 chr3R 31885656 intron heph - chr3R 31885725 intron heph - chr3R 31885794 intron heph - chr3R_11_31885001 chr3R_31885001 RAL-703 1839 chr3R 31930859 31930894 chr3R 31930979 31931011 4 118 3.0 1.0 2.0 1.3 152 chr3R 31930859 intron heph - chr3R 31930935 intron heph - chr3R 31931011 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-703 1840 chr3R 31931187 31931216 chr3R 31931290 31931319 4 103 0.5 4.0 2.2 1.2 132 chr3R 31931187 intron heph - chr3R 31931253 intron heph - chr3R 31931319 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-703 1841 chr3R 31997981 31998021 chr3R 32005465 32005510 blood 10 7486 1.5 3.0 2.2 3.1 7529 chr3R 31997981 intron heph - chr3R 32001746 intron heph - chr3R 32005510 intron heph - chr3R_10_32000001 chr3R_32000001 RAL-703 1842 chr4 319985 320000 chr4 328181 328190 Stalker2 4 8194 2.5 3.5 3.0 1.0 8205 chr4 319985 3` UTR CG32850 + chr4 324088 intron CG32850 + chr4 328190 3` UTR CG32850 + chr4_4_320001 chr4_320001 RAL-703 1843 chr4 418225 418264 chr4 418328 418378 6 106 1.5 2.5 2.0 2.0 153 chr4 418225 intergenic not near genes chr4 418302 intergenic not near genes chr4 418378 intergenic not near genes chr4_6_415001 chr4_415001 RAL-703 1844 chr4 671590 671622 chr4 680190 680224 Tirant 5 8601 1.0 3.0 2.0 1.7 8634 chr4 671590 intron CG11360 + chr4 675907 intron CG11360 + chr4 680224 intron CG11360 + chr4_5_675001 chr4_675001 RAL-703 1845 chr4 959603 959640 chr4 959802 959839 5 199 1.0 1.0 1.0 2.5 236 chr4 959603 intergenic CR44030 +,CR45201 - chr4 959721 5` UTR CR44030 + chr4 959839 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-703 1846 chrX 428400 428440 chrX 434604 434621 3S18 5 6193 4.5 1.0 2.8 1.3 6221 chrX 428400 intron CG32816 - chrX 431510 intron CG32816 - chrX 434621 intron CG32816 - chrX_5_430001 chrX_430001 RAL-703 1847 chrX 550737 550787 chrX 551337 551387 8 591 4.0 3.5 3.8 1.7 650 chrX 550737 intron Appl + chrX 551062 intron Appl + chrX 551387 intron Appl + chrX_8_550001 chrX_550001 RAL-703 1848 chrX 551407 551454 chrX 558986 559026 412 12 7579 3.5 2.0 2.8 3.2 7619 chrX 551407 intron Appl + chrX 555216 intron Appl + chrX 559026 intron Appl + chrX_12_555001 chrX_555001 RAL-703 1849 chrX 726105 726118 chrX 726181 726199 7 90 1.0 4.0 2.5 2.0 94 chrX 726105 intron sdk + chrX 726152 intron sdk + chrX 726199 intron sdk + chrX_7_725001 chrX_725001 RAL-703 1850 chrX 802272 802320 chrX 802365 802416 13 88 4.5 4.5 4.5 2.4 144 chrX 802272 exon CG13359 - chrX 802344 exon CG13359 - chrX 802416 exon CG13359 - chrX_13_800001 chrX_800001 RAL-703 1851 chrX 827591 827633 chrX 835397 835462 roo 5 7815 1.0 0.5 0.8 2.8 7871 chrX 827591 intron CG43867 - chrX 831526 intron CG43867 - chrX 835462 intron CG43867 - chrX_5_830001 chrX_830001 RAL-703 1852 chrX 906685 906725 chrX 908493 908534 S-element 13 1808 2.5 11.0 6.8 1.7 1849 chrX 906685 intron CG43867 - chrX 907610 intron CG43867 - chrX 908534 intron CG43867 - chrX_13_905001 chrX_905001 RAL-703 1853 chrX 1053118 1053120 chrX 16983076 16983076 4 15929957 7.5 12.5 10.0 0.4 15929958 chrX 1053118 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-703 1854 chrX 1357779 1357809 chrX 1367946 1367957 Doc 6 10176 1.0 3.5 2.2 1.9 10178 chrX 1357779 intergenic png - chrX 1362868 intergenic not near genes chrX 1367957 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-703 1855 chrX 1410779 1410800 chrX 1410871 1410875 4 90 3.0 2.5 2.8 1.1 96 chrX 1410779 intron futsch + chrX 1410827 intron futsch + chrX 1410875 intron futsch + chrX_4_1410001 chrX_1410001 RAL-703 1856 chrX 1518042 1518073 chrX 1523443 1523496 jockey 10 5413 2.0 4.5 3.2 2.4 5454 chrX 1518042 intergenic inc + chrX 1520769 intergenic not near genes chrX 1523496 intergenic not near genes chrX_10_1520001 chrX_1520001 RAL-703 1857 chrX 1930522 1930540 chrX 1938113 1938130 opus 6 7590 2.5 3.5 3.0 1.5 7608 chrX 1930522 intergenic CG11596 + chrX 1934326 intergenic not near genes chrX 1938130 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-703 1858 chrX 1930542 1930566 chrX 1938112 1938156 opus 7 7585 0.5 3.5 2.0 2.3 7614 chrX 1930542 intergenic CG11596 + chrX 1934349 intergenic not near genes chrX 1938156 3` UTR CG3857 - chrX_7_1930001 chrX_1930001 RAL-703 1859 chrX 1976791 1976825 chrX 1976896 1976929 10 98 0.5 2.0 1.2 4.5 138 chrX 1976791 intron Hr4 + chrX 1976860 intron Hr4 + chrX 1976929 intron Hr4 + chrX_10_1975001 chrX_1975001 RAL-703 1860 chrX 1982435 1982451 chrX 1982724 1982726 4 285 4.5 2.5 3.5 0.9 291 chrX 1982435 intron Hr4 + chrX 1982580 intron Hr4 + chrX 1982726 intron Hr4 + chrX_4_1980001 chrX_1980001 RAL-703 1861 chrX 1982452 1982453 chrX 1982722 1982738 4 283 4.5 2.5 3.5 0.9 286 chrX 1982452 intron Hr4 + chrX 1982595 intron Hr4 + chrX 1982738 intron Hr4 + chrX_4_1980001 chrX_1980001 RAL-703 1862 chrX 1982455 1982467 chrX 1982718 1982756 4 278 3.0 2.0 2.5 1.1 301 chrX 1982455 intron Hr4 + chrX 1982606 intron Hr4 + chrX 1982756 intron Hr4 + chrX_4_1980001 chrX_1980001 RAL-703 1863 chrX 2026930 2026953 chrX 2027013 2027063 5 103 1.5 2.0 1.8 1.8 133 chrX 2026930 intron Actn - chrX 2026996 intron Actn - chrX 2027063 intron Actn - chrX_5_2025001 chrX_2025001 RAL-703 1864 chrX 2635355 2635399 chrX 2635483 2635528 13 124 2.0 2.0 2.0 4.3 173 chrX 2635355 intron sgg + chrX 2635442 intron sgg + chrX 2635528 intron sgg + chrX_13_2635001 chrX_2635001 RAL-703 1865 chrX 2662177 2662190 chrX 2662266 2662275 7 99 3.5 0.5 2.0 2.3 98 chrX 2662177 intron sgg + chrX 2662226 intron sgg + chrX 2662275 intron sgg + chrX_7_2660001 chrX_2660001 RAL-703 1866 chrX 2844884 2844927 chrX 2852314 2852317 mdg1 5 7421 1.5 5.5 3.5 1.1 7433 chrX 2844884 intron kirre + chrX 2848600 intron kirre + chrX 2852317 intron kirre + chrX_5_2845001 chrX_2845001 RAL-703 1867 chrX 2888094 2888145 chrX 2888189 2888221 9 92 2.0 2.0 2.0 3.0 127 chrX 2888094 intron kirre + chrX 2888158 intron kirre + chrX 2888221 intron kirre + chrX_9_2885001 chrX_2885001 RAL-703 1868 chrX 2907450 2907472 chrX 2909441 2909468 6 1995 1.5 2.5 2.0 2.0 2018 chrX 2907450 intron kirre + chrX 2908459 intron kirre + chrX 2909468 intron kirre + chrX_6_2905001 chrX_2905001 RAL-703 1869 chrX 2969722 2969768 chrX 2969828 2969874 9 103 3.5 2.5 3.0 2.2 152 chrX 2969722 intron,intron kirre +,rst - chrX 2969798 intron,intron kirre +,rst - chrX 2969874 intron,intron kirre +,rst - chrX_9_2965001 chrX_2965001 RAL-703 1870 chrX 3028793 3028812 chrX 3028900 3028920 4 108 1.5 2.5 2.0 1.3 127 chrX 3028793 intron kirre + chrX 3028856 intron kirre + chrX 3028920 intron kirre + chrX_4_3025001 chrX_3025001 RAL-703 1871 chrX 3058003 3058045 chrX 3058263 3058306 pogo 9 259 1.5 2.5 2.0 3.0 303 chrX 3058003 intron kirre + chrX 3058154 intron kirre + chrX 3058306 intron kirre + chrX_9_3055001 chrX_3055001 RAL-703 1872 chrX 3082581 3082606 chrX 3082678 3082691 5 92 3.5 6.0 4.8 0.9 110 chrX 3082581 intron kirre + chrX 3082636 intron kirre + chrX 3082691 intron kirre + chrX_5_3080001 chrX_3080001 RAL-703 1873 chrX 3243616 3243649 chrX 3243726 3243745 4 106 2.5 2.5 2.5 1.1 129 chrX 3243616 intron dnc + chrX 3243680 intron dnc + chrX 3243745 intron dnc + chrX_4_3240001 chrX_3240001 RAL-703 1874 chrX 3270869 3270917 chrX 3270966 3271014 10 95 0.5 1.0 0.8 5.6 145 chrX 3270869 intron dnc + chrX 3270942 intron dnc + chrX 3271014 intron dnc + chrX_10_3270001 chrX_3270001 RAL-703 1875 chrX 3306330 3306374 chrX 3306432 3306476 4 102 1.0 1.5 1.2 1.8 146 chrX 3306330 intron dnc + chrX 3306403 intron dnc + chrX 3306476 intron dnc + chrX_4_3305001 chrX_3305001 RAL-703 1876 chrX 3415000 3415046 chrX 3421205 3421251 3S18 5 6201 1.0 2.0 1.5 2.0 6251 chrX 3415000 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421251 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-703 1877 chrX 3459969 3460015 chrX 3460066 3460111 11 96 1.5 0.5 1.0 5.5 142 chrX 3459969 intron,intron CR44999 +,CG16782 - chrX 3460040 intron,5` UTR CR44999 +,CG16782 - chrX 3460111 intron,5` UTR CR44999 +,CG16782 - chrX_11_3460001 chrX_3460001 RAL-703 1878 chrX 3493087 3493118 chrX 3502249 3502297 roo 8 9172 2.5 1.0 1.8 2.9 9210 chrX 3493087 intron,intron CR44999 +,Gas8 - chrX 3497692 intron,intron CR44999 +,Gas8 - chrX 3502297 intron,intron CR44999 +,Gas8 - chrX_8_3495001 chrX_3495001 RAL-703 1879 chrX 3597117 3597129 chrX 3597200 3597237 5 100 0.5 1.0 0.8 2.8 120 chrX 3597117 intron AstA-R1 + chrX 3597177 intron AstA-R1 + chrX 3597237 intron AstA-R1 + chrX_5_3595001 chrX_3595001 RAL-703 1880 chrX 3597549 3597583 chrX 3619733 3619771 roo 8 22186 3.0 4.0 3.5 1.8 22222 chrX 3597549 intron AstA-R1 + chrX 3608660 intron AstA-R1 + chrX 3619771 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-703 1881 chrX 3713112 3713128 chrX 3713241 3713257 5 128 4.5 2.0 3.2 1.2 145 chrX 3713112 intron Rala - chrX 3713184 intron Rala - chrX 3713257 intron Rala - chrX_5_3710001 chrX_3710001 RAL-703 1882 chrX 3842312 3842350 chrX 3842573 3842611 pogo 8 260 1.5 4.5 3.0 2.0 299 chrX 3842312 intron ec + chrX 3842462 intron ec + chrX 3842611 intron ec + chrX_8_3840001 chrX_3840001 RAL-703 1883 chrX 3862809 3862842 chrX 3862916 3862949 4 107 3.0 3.0 3.0 1.0 140 chrX 3862809 intergenic yin - chrX 3862879 intergenic yin - chrX 3862949 intergenic yin - chrX_4_3860001 chrX_3860001 RAL-703 1884 chrX 3881264 3881273 chrX 3881422 3881427 4 156 8.0 3.5 5.8 0.6 163 chrX 3881264 intron VhaAC39-1 + chrX 3881346 intron VhaAC39-1 + chrX 3881427 intron VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-703 1885 chrX 3881275 3881303 chrX 3881420 3881462 7 156 4.5 2.5 3.5 1.6 187 chrX 3881275 intron VhaAC39-1 + chrX 3881368 intron VhaAC39-1 + chrX 3881462 exon VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-703 1886 chrX 3950781 3950830 chrX 3950880 3950930 9 100 0.5 1.5 1.0 4.5 149 chrX 3950781 intron Vap-33A + chrX 3950856 intron Vap-33A + chrX 3950930 intron Vap-33A + chrX_9_3950001 chrX_3950001 RAL-703 1887 chrX 3986843 3986870 chrX 3994496 3994523 412 5 7651 2.5 2.0 2.2 1.6 7680 chrX 3986843 intergenic not near genes chrX 3990683 intergenic not near genes chrX 3994523 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-703 1888 chrX 4029511 4029560 chrX 4029719 4029770 5 203 1.0 1.0 1.0 2.5 259 chrX 4029511 intergenic not near genes chrX 4029640 intergenic not near genes chrX 4029770 intergenic not near genes chrX_5_4025001 chrX_4025001 RAL-703 1889 chrX 4150398 4150437 chrX 4150496 4150538 8 100 1.5 1.0 1.2 3.6 140 chrX 4150398 intron Fas2 - chrX 4150468 intron Fas2 - chrX 4150538 intron Fas2 - chrX_8_4150001 chrX_4150001 RAL-703 1890 chrX 4157889 4157913 chrX 4164953 4164986 297 7 7071 2.0 1.5 1.8 2.5 7097 chrX 4157889 intron Fas2 - chrX 4161438 intron Fas2 - chrX 4164986 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-703 1891 chrX 4324385 4324414 chrX 4324482 4324511 4 97 1.0 4.5 2.8 1.1 126 chrX 4324385 intron norpA + chrX 4324448 intron norpA + chrX 4324511 intron norpA + chrX_4_4320001 chrX_4320001 RAL-703 1892 chrX 4382360 4382377 chrX 4382460 4382476 4 99 3.5 1.0 2.2 1.2 116 chrX 4382360 3` UTR CG12688 + chrX 4382418 3` UTR CG12688 + chrX 4382476 intergenic CG12688 + chrX_4_4380001 chrX_4380001 RAL-703 1893 chrX 4415300 4415338 chrX 4415383 4415433 7 90 3.0 3.5 3.2 1.7 133 chrX 4415300 intron,intron CR32773 -,bi + chrX 4415366 intron,intron CR32773 -,bi + chrX 4415433 intron,intron CR32773 -,bi + chrX_7_4415001 chrX_4415001 RAL-703 1894 chrX 4515854 4515856 chrX 4515926 4515948 4 88 1.0 2.5 1.8 1.4 94 chrX 4515854 intron CR32773 - chrX 4515901 intron CR32773 - chrX 4515948 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-703 1895 chrX 4660798 4660827 chrX 4660917 4660946 5 115 4.0 0.5 2.2 1.6 148 chrX 4660798 intron CG3009 - chrX 4660872 intron CG3009 - chrX 4660946 intron CG3009 - chrX_5_4660001 chrX_4660001 RAL-703 1896 chrX 4700371 4700423 chrX 4700734 4700786 jockey 7 362 2.5 1.5 2.0 2.3 415 chrX 4700371 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700786 3` UTR ctp + chrX_7_4700001 chrX_4700001 RAL-703 1897 chrX 4723564 4723586 chrX 4723663 4723671 4 96 3.5 6.0 4.8 0.7 107 chrX 4723564 exon Proc-R + chrX 4723618 intron Proc-R + chrX 4723671 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-703 1898 chrX 4731797 4731814 chrX 4736910 4736910 jockey 5 5108 4.0 3.0 3.5 1.1 5113 chrX 4731797 intergenic not near genes chrX 4734354 intergenic not near genes chrX 4736910 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-703 1899 chrX 4763245 4763279 chrX 4763753 4763782 Stalker4 9 504 1.0 1.5 1.2 4.1 537 chrX 4763245 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763782 intergenic not near genes chrX_9_4760001 chrX_4760001 RAL-703 1900 chrX 4787059 4787084 chrX 4787177 4787197 5 117 0.5 2.0 1.2 2.3 138 chrX 4787059 intergenic not near genes chrX 4787128 intergenic not near genes chrX 4787197 intergenic not near genes chrX_5_4785001 chrX_4785001 RAL-703 1901 chrX 4792358 4792401 chrX 4792811 4792854 jockey 6 452 2.0 3.5 2.8 1.6 496 chrX 4792358 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792854 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-703 1902 chrX 4844499 4844521 chrX 4844628 4844650 9 128 0.5 0.5 0.5 6.0 151 chrX 4844499 intron CG42594 + chrX 4844574 intron CG42594 + chrX 4844650 intron CG42594 + chrX_9_4840001 chrX_4840001 RAL-703 1903 chrX 4864162 4864172 chrX 4864260 4864270 4 98 5.5 4.5 5.0 0.7 108 chrX 4864162 intron CG42594 + chrX 4864216 intron CG42594 + chrX 4864270 intron CG42594 + chrX_4_4860001 chrX_4860001 RAL-703 1904 chrX 4990033 4990072 chrX 4997267 4997306 roo 6 7234 1.0 2.0 1.5 2.4 7273 chrX 4990033 intron CR44833 - chrX 4993670 intron CR44833 - chrX 4997306 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-703 1905 chrX 5049565 5049604 chrX 5049673 5049712 5 107 2.5 1.0 1.8 1.8 147 chrX 5049565 intron,intron CR44833 -,ovo + chrX 5049638 intron,intron CR44833 -,ovo + chrX 5049712 intron,intron CR44833 -,ovo + chrX_5_5045001 chrX_5045001 RAL-703 1906 chrX 5096271 5096305 chrX 5103840 5103858 springer 9 7573 1.5 2.5 2.0 3.0 7587 chrX 5096271 intron,intron CG15465 +,rg + chrX 5100064 intron,intron CG15465 +,rg + chrX 5103858 intron,intron CG15465 +,rg + chrX_9_5100001 chrX_5100001 RAL-703 1907 chrX 5131404 5131423 chrX 5131484 5131496 4 74 6.0 6.0 6.0 0.6 92 chrX 5131404 intron,intron CG15465 +,rg + chrX 5131450 intron,intron CG15465 +,rg + chrX 5131496 intron,intron CG15465 +,rg + chrX_4_5130001 chrX_5130001 RAL-703 1908 chrX 5338689 5338731 chrX 5339962 5339971 jockey 6 1266 2.5 1.5 2.0 2.0 1282 chrX 5338689 intergenic not near genes chrX 5339330 intergenic not near genes chrX 5339971 intergenic SK + chrX_6_5335001 chrX_5335001 RAL-703 1909 chrX 5345426 5345475 chrX 5345558 5345597 8 128 2.0 2.5 2.2 2.5 171 chrX 5345426 intron SK + chrX 5345512 intron SK + chrX 5345597 intron SK + chrX_8_5345001 chrX_5345001 RAL-703 1910 chrX 5524833 5524855 chrX 5528716 5528737 412 4 3882 4.0 0.5 2.2 1.2 3904 chrX 5524833 intergenic snoRNA:Psi28S-3342 - chrX 5526785 intergenic not near genes chrX 5528737 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-703 1911 chrX 5848737 5848778 chrX 5848966 5849007 4 229 2.5 6.0 4.2 0.8 270 chrX 5848737 intergenic not near genes chrX 5848872 intergenic not near genes chrX 5849007 intergenic not near genes chrX_4_5845001 chrX_5845001 RAL-703 1912 chrX 5883814 5883837 chrX 5884063 5884077 pogo 5 254 1.0 2.5 1.8 1.8 263 chrX 5883814 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884077 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-703 1913 chrX 5884152 5884187 chrX 5884411 5884447 pogo 8 260 2.0 0.5 1.2 3.6 295 chrX 5884152 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884447 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-703 1914 chrX 5896958 5896999 chrX 5897120 5897152 7 158 3.0 4.0 3.5 1.6 194 chrX 5896958 intron CR45668 - chrX 5897055 intron CR45668 - chrX 5897152 intron CR45668 - chrX_7_5895001 chrX_5895001 RAL-703 1915 chrX 6003268 6003303 chrX 6003368 6003404 4 100 1.5 2.5 2.0 1.3 136 chrX 6003268 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003404 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-703 1916 chrX 6093293 6093317 chrX 6093392 6093412 6 95 5.5 3.5 4.5 1.1 119 chrX 6093293 intron Nep1 + chrX 6093352 intron Nep1 + chrX 6093412 intron Nep1 + chrX_6_6090001 chrX_6090001 RAL-703 1917 chrX 6171581 6171597 chrX 6179032 6179047 Quasimodo 7 7450 3.5 4.0 3.8 1.5 7466 chrX 6171581 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179047 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-703 1918 chrX 6171599 6171612 chrX 6179030 6179065 Quasimodo 8 7443 1.5 4.0 2.8 2.1 7466 chrX 6171599 intron Ca-alpha1T - chrX 6175332 intron Ca-alpha1T - chrX 6179065 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-703 1919 chrX 6335223 6335237 chrX 6337735 6337753 Tirant 4 2522 0.5 3.0 1.8 1.4 2530 chrX 6335223 intergenic not near genes chrX 6336488 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-703 1920 chrX 6344466 6344487 chrX 6344551 6344571 5 96 2.0 0.0 1.0 2.5 105 chrX 6344466 intergenic not near genes chrX 6344518 intergenic not near genes chrX 6344571 intergenic not near genes chrX_5_6340001 chrX_6340001 RAL-703 1921 chrX 6356933 6356968 chrX 6357460 6357484 5 521 5.5 1.5 3.5 1.1 551 chrX 6356933 intron kdn + chrX 6357208 intron kdn + chrX 6357484 intron kdn + chrX_5_6355001 chrX_6355001 RAL-703 1922 chrX 6388656 6388694 chrX 6388752 6388790 9 95 3.0 2.5 2.8 2.4 134 chrX 6388656 intergenic not near genes chrX 6388723 intergenic not near genes chrX 6388790 intergenic not near genes chrX_9_6385001 chrX_6385001 RAL-703 1923 chrX 6392853 6392898 chrX 6397637 6397674 Doc 8 4780 1.5 2.5 2.0 2.7 4821 chrX 6392853 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397674 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-703 1924 chrX 6509899 6509932 chrX 6509998 6510012 8 93 2.0 1.0 1.5 3.2 113 chrX 6509899 intron CG42340 - chrX 6509956 intron CG42340 - chrX 6510012 intron CG42340 - chrX_8_6505001 chrX_6505001 RAL-703 1925 chrX 6562802 6562819 chrX 6571302 6571320 Tirant 4 8499 7.0 4.5 5.8 0.6 8518 chrX 6562802 intron CG34417 + chrX 6567061 intron CG34417 + chrX 6571320 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-703 1926 chrX 6562821 6562847 chrX 6571301 6571349 Tirant 5 8497 4.0 4.5 4.2 1.0 8528 chrX 6562821 intron CG34417 + chrX 6567085 intron CG34417 + chrX 6571349 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-703 1927 chrX 6618451 6618472 chrX 6618543 6618570 8 97 5.5 4.5 5.0 1.3 119 chrX 6618451 intron pigs + chrX 6618510 intron pigs + chrX 6618570 intron pigs + chrX_8_6615001 chrX_6615001 RAL-703 1928 chrX 6792070 6792088 chrX 6792175 6792186 6 104 3.0 3.5 3.2 1.4 116 chrX 6792070 intron C3G - chrX 6792128 intron C3G - chrX 6792186 intron C3G - chrX_6_6790001 chrX_6790001 RAL-703 1929 chrX 6897568 6897576 chrX 6897650 6897667 4 88 0.5 0.5 0.5 2.7 99 chrX 6897568 intergenic not near genes chrX 6897618 intergenic not near genes chrX 6897667 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-703 1930 chrX 6897594 6897704 chrX 6897673 6897825 4 115 0.0 0.5 0.2 3.3 231 chrX 6897594 intergenic not near genes chrX 6897710 intergenic not near genes chrX 6897825 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-703 1931 chrX 6989485 6989531 chrX 6989590 6989638 5 104 3.0 2.0 2.5 1.4 153 chrX 6989485 intron ogre - chrX 6989562 intron ogre - chrX 6989638 intron ogre - chrX_5_6985001 chrX_6985001 RAL-703 1932 chrX 7023592 7023631 chrX 7031002 7031036 Tabor 7 7409 5.0 5.0 5.0 1.2 7444 chrX 7023592 intron CG12541 - chrX 7027314 intron CG12541 - chrX 7031036 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-703 1933 chrX 7125230 7125275 chrX 7134409 7134454 roo 8 9179 1.5 3.5 2.5 2.3 9224 chrX 7125230 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134454 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-703 1934 chrX 7322889 7322916 chrX 7322992 7323020 8 102 3.5 4.0 3.8 1.7 131 chrX 7322889 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322954 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323020 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_8_7320001 chrX_7320001 RAL-703 1935 chrX 7486576 7486599 chrX 7486855 7486877 6 278 0.5 3.0 1.8 2.1 301 chrX 7486576 intergenic not near genes chrX 7486726 intergenic not near genes chrX 7486877 intergenic not near genes chrX_6_7485001 chrX_7485001 RAL-703 1936 chrX 7570630 7570659 chrX 7570770 7570813 8 150 1.0 1.0 1.0 4.0 183 chrX 7570630 intergenic not near genes chrX 7570722 intergenic not near genes chrX 7570813 intergenic not near genes chrX_8_7570001 chrX_7570001 RAL-703 1937 chrX 7702895 7702918 chrX 7703352 7703376 jockey 5 455 2.5 2.5 2.5 1.4 481 chrX 7702895 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703376 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-703 1938 chrX 7845718 7845755 chrX 7847229 7847261 hopper2 6 1510 2.5 5.5 4.0 1.2 1543 chrX 7845718 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847261 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-703 1939 chrX 8031410 8031441 chrX 8035738 8035770 Juan 6 4328 7.0 3.0 5.0 1.0 4360 chrX 8031410 intergenic not near genes chrX 8033590 intergenic not near genes chrX 8035770 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-703 1940 chrX 8079895 8079930 chrX 8080024 8080051 7 125 3.0 2.5 2.8 1.8 156 chrX 8079895 exon CG2254 - chrX 8079973 intron CG2254 - chrX 8080051 intron CG2254 - chrX_7_8075001 chrX_8075001 RAL-703 1941 chrX 8730450 8730461 chrX 8730523 8730554 5 86 0.0 2.5 1.2 2.3 104 chrX 8730450 intergenic not near genes chrX 8730502 intergenic not near genes chrX 8730554 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-703 1942 chrX 8765370 8765392 chrX 8765451 8765457 7 83 1.5 4.0 2.8 1.8 87 chrX 8765370 intron Lim1 - chrX 8765414 intron Lim1 - chrX 8765457 intron Lim1 - chrX_7_8765001 chrX_8765001 RAL-703 1943 chrX 8772229 8772250 chrX 8772326 8772349 4 94 1.5 3.5 2.5 1.1 120 chrX 8772229 intron Lim1 - chrX 8772289 intron Lim1 - chrX 8772349 intron Lim1 - chrX_4_8770001 chrX_8770001 RAL-703 1944 chrX 8885659 8885700 chrX 8885778 8885820 4 119 2.0 3.5 2.8 1.1 161 chrX 8885659 intron Moe - chrX 8885740 intron Moe - chrX 8885820 intron Moe - chrX_4_8885001 chrX_8885001 RAL-703 1945 chrX 8922344 8922358 chrX 8922779 8922804 jockey 9 448 4.0 4.0 4.0 1.8 460 chrX 8922344 intron rdgA + chrX 8922574 intron rdgA + chrX 8922804 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-703 1946 chrX 8948754 8948785 chrX 8956271 8956315 roo 4 7527 2.0 3.0 2.5 1.1 7561 chrX 8948754 intron rdgA + chrX 8952534 intron rdgA + chrX 8956315 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-703 1947 chrX 9337924 9337972 chrX 9338035 9338082 9 111 2.5 2.5 2.5 2.6 158 chrX 9337924 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338082 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-703 1948 chrX 9457817 9457852 chrX 9457906 9457945 6 94 5.0 3.0 4.0 1.2 128 chrX 9457817 intron mgl - chrX 9457881 intron mgl - chrX 9457945 intron mgl - chrX_6_9455001 chrX_9455001 RAL-703 1949 chrX 9508124 9508161 chrX 9509662 9509694 jockey 9 1533 3.0 2.5 2.8 2.4 1570 chrX 9508124 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509694 intron CG32700 - chrX_9_9505001 chrX_9505001 RAL-703 1950 chrX 9575777 9575822 chrX 9576119 9576165 mdg3 8 331 2.0 7.0 4.5 1.5 388 chrX 9575777 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576165 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-703 1951 chrX 9599176 9599200 chrX 9599267 9599275 5 91 2.0 2.0 2.0 1.7 99 chrX 9599176 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599275 intergenic not near genes chrX_5_9595001 chrX_9595001 RAL-703 1952 chrX 9791843 9791881 chrX 9791959 9791997 6 110 4.5 3.5 4.0 1.2 154 chrX 9791843 intron CG32698 + chrX 9791920 intron CG32698 + chrX 9791997 intron CG32698 + chrX_6_9790001 chrX_9790001 RAL-703 1953 chrX 9950203 9950243 chrX 9950294 9950339 9 96 3.0 3.5 3.2 2.1 136 chrX 9950203 intergenic not near genes chrX 9950271 intergenic not near genes chrX 9950339 intergenic not near genes chrX_9_9950001 chrX_9950001 RAL-703 1954 chrX 10035448 10035464 chrX 10035533 10035565 6 98 1.0 3.5 2.2 1.9 117 chrX 10035448 exon Cht6 + chrX 10035506 exon Cht6 + chrX 10035565 exon Cht6 + chrX_6_10035001 chrX_10035001 RAL-703 1955 chrX 10151920 10151932 chrX 10152003 10152010 7 88 3.5 3.5 3.5 1.6 90 chrX 10151920 intron CR44894 - chrX 10151965 intron CR44894 - chrX 10152010 intron CR44894 - chrX_7_10150001 chrX_10150001 RAL-703 1956 chrX 10154265 10154308 chrX 10154360 10154404 7 90 3.5 3.0 3.2 1.7 139 chrX 10154265 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154404 intron,exon CR44894 -,CG12645 + chrX_7_10150001 chrX_10150001 RAL-703 1957 chrX 10200096 10200145 chrX 10200242 10200284 7 145 4.0 2.5 3.2 1.7 188 chrX 10200096 intron CR44894 - chrX 10200190 intron CR44894 - chrX 10200284 intron CR44894 - chrX_7_10200001 chrX_10200001 RAL-703 1958 chrX 10216829 10216852 chrX 10216925 10216952 4 94 4.5 2.5 3.5 0.9 123 chrX 10216829 3` UTR l(1)G0230 + chrX 10216890 3` UTR l(1)G0230 + chrX 10216952 3` UTR l(1)G0230 + chrX_4_10215001 chrX_10215001 RAL-703 1959 chrX 10310077 10310084 chrX 10310340 10310348 4 263 2.5 3.0 2.8 1.1 271 chrX 10310077 intron alpha-Man-I - chrX 10310212 intron alpha-Man-I - chrX 10310348 intron alpha-Man-I - chrX_4_10310001 chrX_10310001 RAL-703 1960 chrX 10369093 10369125 chrX 10369275 10369290 8 182 4.5 1.0 2.8 2.1 197 chrX 10369093 intron CG17841 + chrX 10369192 intron CG17841 + chrX 10369290 intron CG17841 + chrX_8_10365001 chrX_10365001 RAL-703 1961 chrX 10550324 10550344 chrX 10550422 10550426 6 95 2.0 1.0 1.5 2.4 102 chrX 10550324 intron spri - chrX 10550375 intron spri - chrX 10550426 intron spri - chrX_6_10550001 chrX_10550001 RAL-703 1962 chrX 10550840 10550883 chrX 10552327 10552354 hobo 7 1478 2.5 3.0 2.8 1.8 1514 chrX 10550840 intron spri - chrX 10551597 intron spri - chrX 10552354 intron spri - chrX_7_10550001 chrX_10550001 RAL-703 1963 chrX 10686043 10686081 chrX 10691192 10691238 roo 5 5155 3.5 2.0 2.8 1.3 5195 chrX 10686043 intron X11Lbeta + chrX 10688640 intron X11Lbeta + chrX 10691238 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-703 1964 chrX 5041429 5041433 chrX 10907853 10907858 5 5866425 1.5 15.0 8.2 0.5 5866429 chrX 5041429 intron CR44833 - chrX 7974644 intron sn + chrX 10907858 exon CG43901 + chrX_5_7970001 chrX_7970001 RAL-703 1965 chrX 11062434 11062476 chrX 11062549 11062591 6 115 1.0 2.0 1.5 2.4 157 chrX 11062434 exon CG1537 - chrX 11062512 intron CG1537 - chrX 11062591 intron CG1537 - chrX_6_11060001 chrX_11060001 RAL-703 1966 chrX 11205289 11205321 chrX 11205385 11205416 5 95 3.5 2.5 3.0 1.2 127 chrX 11205289 intergenic not near genes chrX 11205352 intergenic not near genes chrX 11205416 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-703 1967 chrX 11209597 11209645 chrX 11209812 11209856 5 214 1.0 3.0 2.0 1.7 259 chrX 11209597 intergenic not near genes chrX 11209726 intergenic not near genes chrX 11209856 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-703 1968 chrX 11219220 11219250 chrX 11219337 11219344 4 112 3.0 2.0 2.5 1.1 124 chrX 11219220 intergenic not near genes chrX 11219282 intergenic not near genes chrX 11219344 intergenic not near genes chrX_4_11215001 chrX_11215001 RAL-703 1969 chrX 11312040 11312081 chrX 11319412 11319454 Stalker2 4 7368 3.0 3.0 3.0 1.0 7414 chrX 11312040 intergenic not near genes chrX 11315747 intergenic not near genes chrX 11319454 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-703 1970 chrX 11312082 11312094 chrX 11319410 11319434 Stalker2 6 7350 1.5 3.0 2.2 1.9 7352 chrX 11312082 intergenic not near genes chrX 11315758 intergenic not near genes chrX 11319434 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-703 1971 chrX 11516595 11516627 chrX 11516690 11516722 6 96 4.0 3.5 3.8 1.2 127 chrX 11516595 intron Drak + chrX 11516658 intron Drak + chrX 11516722 intron Drak + chrX_6_11515001 chrX_11515001 RAL-703 1972 chrX 11558257 11558296 chrX 11558361 11558389 6 100 4.0 0.5 2.2 1.9 132 chrX 11558257 intron CG1572 - chrX 11558323 intron CG1572 - chrX 11558389 intron CG1572 - chrX_6_11555001 chrX_11555001 RAL-703 1973 chrX 11633412 11633445 chrX 11640486 11640508 297 8 7071 5.0 4.5 4.8 1.4 7096 chrX 11633412 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640508 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-703 1974 chrX 11762218 11762230 chrX 11762324 11762336 4 106 0.5 3.0 1.8 1.4 118 chrX 11762218 intron m + chrX 11762277 intron m + chrX 11762336 intron m + chrX_4_11760001 chrX_11760001 RAL-703 1975 chrX 11922345 11922377 chrX 11922498 11922530 6 153 2.5 1.5 2.0 2.0 185 chrX 11922345 exon Sclp - chrX 11922438 intron Sclp - chrX 11922530 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-703 1976 chrX 12168130 12168161 chrX 12173578 12173592 I-element 4 5448 0.5 2.5 1.5 1.6 5462 chrX 12168130 intron Ten-a + chrX 12170861 intron Ten-a + chrX 12173592 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-703 1977 chrX 12176528 12176545 chrX 12176956 12176994 4 436 2.5 6.5 4.5 0.7 466 chrX 12176528 intron,3` UTR Ten-a +,CG1924 - chrX 12176761 intron,3` UTR Ten-a +,CG1924 - chrX 12176994 intron,exon Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-703 1978 chrX 12301959 12301984 chrX 12303269 12303295 X-element 4 1317 1.0 2.0 1.5 1.6 1336 chrX 12301959 intron Ten-a + chrX 12302627 intron Ten-a + chrX 12303295 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-703 1979 chrX 12350753 12350789 chrX 12350854 12350890 6 96 4.0 0.5 2.2 1.9 137 chrX 12350753 intergenic not near genes chrX 12350822 intergenic not near genes chrX 12350890 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-703 1980 chrX 12528114 12528140 chrX 12528200 12528222 5 93 2.0 2.0 2.0 1.7 108 chrX 12528114 intron CG43921 - chrX 12528168 intron CG43921 - chrX 12528222 intron CG43921 - chrX_5_12525001 chrX_12525001 RAL-703 1981 chrX 12538521 12538552 chrX 12538620 12538634 8 100 2.0 0.5 1.2 3.6 113 chrX 12538521 intron CG43921 - chrX 12538578 intron CG43921 - chrX 12538634 intron CG43921 - chrX_8_12535001 chrX_12535001 RAL-703 1982 chrX 12557146 12557158 chrX 12557230 12557237 4 86 2.5 2.5 2.5 1.1 91 chrX 12557146 intron CG43921 - chrX 12557192 intron CG43921 - chrX 12557237 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-703 1983 chrX 12577605 12577622 chrX 12577707 12577752 4 123 2.0 1.5 1.8 1.4 147 chrX 12577605 intron CG11138 - chrX 12577678 intron CG11138 - chrX 12577752 intron CG11138 - chrX_4_12575001 chrX_12575001 RAL-703 1984 chrX 12839902 12839944 chrX 12840246 12840282 4 340 1.5 3.5 2.5 1.1 380 chrX 12839902 intron Pde9 - chrX 12840092 intron Pde9 - chrX 12840282 intron Pde9 - chrX_4_12840001 chrX_12840001 RAL-703 1985 chrX 12990720 12990762 chrX 12991028 12991071 8 308 1.5 2.0 1.8 2.9 351 chrX 12990720 intron rad + chrX 12990896 intron rad + chrX 12991071 intron rad + chrX_8_12990001 chrX_12990001 RAL-703 1986 chrX 13172341 13172367 chrX 13172437 13172463 6 91 2.5 2.5 2.5 1.7 122 chrX 13172341 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172463 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-703 1987 chrX 13172370 13172375 chrX 13172430 13172471 4 86 2.0 2.5 2.2 1.2 101 chrX 13172370 exon CG34411 - chrX 13172420 intron CG34411 - chrX 13172471 intron CG34411 - chrX_4_13170001 chrX_13170001 RAL-703 1988 chrX 13236883 13236901 chrX 13236971 13237001 4 100 0.5 2.0 1.2 1.8 118 chrX 13236883 intron mew - chrX 13236942 intron mew - chrX 13237001 intron mew - chrX_4_13235001 chrX_13235001 RAL-703 1989 chrX 13374819 13374865 chrX 13374919 13374965 12 98 3.0 0.5 1.8 4.3 146 chrX 13374819 intron CG1640 + chrX 13374892 intron CG1640 + chrX 13374965 intron CG1640 + chrX_12_13370001 chrX_13370001 RAL-703 1990 chrX 13429469 13429495 chrX 13430631 13430646 jockey 7 1161 0.0 0.0 0.0 7.0 1177 chrX 13429469 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430646 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-703 1991 chrX 13463629 13463658 chrX 13469226 13469255 mdg3 7 5595 4.5 2.0 3.2 1.7 5626 chrX 13463629 intron Neto + chrX 13466442 intron Neto + chrX 13469255 intron Neto + chrX_7_13465001 chrX_13465001 RAL-703 1992 chrX 13563404 13563439 chrX 13563504 13563536 5 98 1.0 1.0 1.0 2.5 132 chrX 13563404 intergenic CG32633 +,Tango13 + chrX 13563470 intergenic CG32633 +,Tango13 + chrX 13563536 intergenic CG32633 +,Tango13 + chrX_5_13560001 chrX_13560001 RAL-703 1993 chrX 13935504 13935516 chrX 13935607 13935616 4 102 5.5 5.5 5.5 0.6 112 chrX 13935504 intron mamo - chrX 13935560 intron mamo - chrX 13935616 intron mamo - chrX_4_13935001 chrX_13935001 RAL-703 1994 chrX 14011291 14011307 chrX 14011425 14011444 4 136 2.5 2.0 2.2 1.2 153 chrX 14011291 intergenic not near genes chrX 14011368 intergenic not near genes chrX 14011444 intergenic not near genes chrX_4_14010001 chrX_14010001 RAL-703 1995 chrX 14105012 14105054 chrX 14114180 14114204 roo 10 9165 3.0 4.5 3.8 2.1 9192 chrX 14105012 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_10_14105001 chrX_14105001 RAL-703 1996 chrX 14131469 14131523 chrX 14131570 14131586 7 81 0.5 0.5 0.5 4.7 117 chrX 14131469 intergenic not near genes chrX 14131528 intergenic not near genes chrX 14131586 intergenic not near genes chrX_7_14130001 chrX_14130001 RAL-703 1997 chrX 14407253 14407275 chrX 14407355 14407376 4 102 1.5 0.0 0.8 2.2 123 chrX 14407253 intron dpr8 + chrX 14407314 intron dpr8 + chrX 14407376 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-703 1998 chrX 14484806 14484981 chrX 14484927 14485078 9 112 0.0 0.0 0.0 9.0 272 chrX 14484806 intergenic not near genes chrX 14484942 intergenic not near genes chrX 14485078 intergenic not near genes chrX_9_14480001 chrX_14480001 RAL-703 1999 chrX 14516181 14516222 chrX 14516282 14516323 7 99 4.0 2.5 3.2 1.7 142 chrX 14516181 intergenic not near genes chrX 14516252 intergenic not near genes chrX 14516323 intergenic not near genes chrX_7_14515001 chrX_14515001 RAL-703 2000 chrX 14570054 14570101 chrX 14570156 14570202 4 102 3.0 0.0 1.5 1.6 148 chrX 14570054 intergenic not near genes chrX 14570128 intergenic not near genes chrX 14570202 intergenic not near genes chrX_4_14570001 chrX_14570001 RAL-703 2001 chrX 14636451 14636491 chrX 14641910 14641933 I-element 9 5453 0.5 1.5 1.0 4.5 5482 chrX 14636451 intron NetA - chrX 14639192 intron NetA - chrX 14641933 intron NetA - chrX_9_14635001 chrX_14635001 RAL-703 2002 chrX 14767959 14767975 chrX 14768040 14768075 6 95 1.5 0.5 1.0 3.0 116 chrX 14767959 intergenic not near genes chrX 14768017 intergenic not near genes chrX 14768075 intergenic not near genes chrX_6_14765001 chrX_14765001 RAL-703 2003 chrX 14778020 14778050 chrX 14782836 14782867 Doc 8 4816 4.0 4.5 4.2 1.5 4847 chrX 14778020 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782867 intergenic Ag5r2 - chrX_8_14780001 chrX_14780001 RAL-703 2004 chrX 14818761 14818794 chrX 14823969 14824013 copia 4 5213 1.0 1.0 1.0 2.0 5252 chrX 14818761 intron rut - chrX 14821387 intron rut - chrX 14824013 intron rut - chrX_4_14820001 chrX_14820001 RAL-703 2005 chrX 14861932 14861966 chrX 14862126 14862160 6 196 6.0 8.0 7.0 0.8 228 chrX 14861932 intron Flo2 + chrX 14862046 intron Flo2 + chrX 14862160 intron Flo2 + chrX_6_14860001 chrX_14860001 RAL-703 2006 chrX 14881723 14881744 chrX 14881830 14881854 4 109 4.5 1.0 2.8 1.1 131 chrX 14881723 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881788 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881854 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX_4_14880001 chrX_14880001 RAL-703 2007 chrX 14936845 14936892 chrX 14946121 14946168 roo 11 9274 1.5 2.5 2.0 3.7 9323 chrX 14936845 intron pdgy - chrX 14941506 intron pdgy - chrX 14946168 intron pdgy - chrX_11_14940001 chrX_14940001 RAL-703 2008 chrX 15248245 15248291 chrX 15248338 15248387 10 92 1.0 0.5 0.8 5.6 142 chrX 15248245 intergenic not near genes chrX 15248316 intergenic not near genes chrX 15248387 intergenic not near genes chrX_10_15245001 chrX_15245001 RAL-703 2009 chrX 15273711 15273734 chrX 15274868 15274906 1360 7 1165 2.0 4.5 3.2 1.7 1195 chrX 15273711 intergenic not near genes chrX 15274308 intergenic not near genes chrX 15274906 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-703 2010 chrX 15421912 15421922 chrX 15423443 15423443 pogo 4 1528 0.5 3.0 1.8 1.4 1531 chrX 15421912 intron Cngl - chrX 15422678 intron Cngl - chrX 15423443 intron Cngl - chrX_4_15420001 chrX_15420001 RAL-703 2011 chrX 15497597 15497618 chrX 15497691 15497727 4 102 0.5 3.5 2.0 1.3 130 chrX 15497597 intron,3` UTR Gmap +,CR44888 - chrX 15497662 intron,3` UTR Gmap +,CR44888 - chrX 15497727 intron,3` UTR Gmap +,CR44888 - chrX_4_15495001 chrX_15495001 RAL-703 2012 chrX 15536693 15536711 chrX 15536784 15536795 5 90 3.0 6.5 4.8 0.9 102 chrX 15536693 intron Ac13E - chrX 15536744 intron Ac13E - chrX 15536795 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-703 2013 chrX 15638399 15638434 chrX 15638515 15638550 6 114 2.5 3.5 3.0 1.5 151 chrX 15638399 intergenic not near genes chrX 15638474 intergenic not near genes chrX 15638550 intergenic not near genes chrX_6_15635001 chrX_15635001 RAL-703 2014 chrX 15678015 15678046 chrX 15678113 15678143 5 95 1.5 2.5 2.0 1.7 128 chrX 15678015 intergenic CG12708 + chrX 15678079 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-703 2015 chrX 16100537 16100591 chrX 16100635 16100691 6 99 1.0 2.5 1.8 2.1 154 chrX 16100537 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100691 intron,intron CG42353 -,CG42354 - chrX_6_16100001 chrX_16100001 RAL-703 2016 chrX 16492639 16492674 chrX 16498236 16498259 mdg3 6 5592 5.0 5.5 5.2 1.0 5620 chrX 16492639 intron para - chrX 16495449 intron para - chrX 16498259 intron para - chrX_6_16495001 chrX_16495001 RAL-703 2017 chrX 16870066 16870092 chrX 16870162 16870184 4 97 1.5 2.5 2.0 1.3 118 chrX 16870066 intron CG13003 - chrX 16870125 intron CG13003 - chrX 16870184 intron CG13003 - chrX_4_16870001 chrX_16870001 RAL-703 2018 chrX 16905810 16905860 chrX 16906015 16906065 5 203 1.5 2.5 2.0 1.7 255 chrX 16905810 3` UTR CR44754 - chrX 16905938 3` UTR CR44754 - chrX 16906065 3` UTR CR44754 - chrX_5_16905001 chrX_16905001 RAL-703 2019 chrX 16936003 16936033 chrX 16936441 16936458 jockey 5 435 0.5 4.0 2.2 1.6 455 chrX 16936003 intron CG4928 + chrX 16936230 intron CG4928 + chrX 16936458 intron CG4928 + chrX_5_16935001 chrX_16935001 RAL-703 2020 chrX 1053117 1053120 chrX 16983076 16983076 4 15929958 7.5 12.5 10.0 0.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-703 2021 chrX 17011959 17011987 chrX 17012061 17012089 6 102 2.5 4.0 3.2 1.4 130 chrX 17011959 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012089 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-703 2022 chrX 17057933 17057964 chrX 17058194 17058224 pogo 4 260 0.0 2.5 1.2 1.8 291 chrX 17057933 intron CG45002 - chrX 17058078 intron CG45002 - chrX 17058224 intron CG45002 - chrX_4_17055001 chrX_17055001 RAL-703 2023 chrX 17063177 17063183 chrX 17063284 17063289 4 104 3.0 2.0 2.5 1.1 112 chrX 17063177 intron CG45002 - chrX 17063233 intron CG45002 - chrX 17063289 intron CG45002 - chrX_4_17060001 chrX_17060001 RAL-703 2024 chrX 17063184 17063207 chrX 17063273 17063314 4 100 2.5 0.5 1.5 1.6 130 chrX 17063184 intron CG45002 - chrX 17063249 intron CG45002 - chrX 17063314 intron CG45002 - chrX_4_17060001 chrX_17060001 RAL-703 2025 chrX 17195186 17195231 chrX 17200292 17200307 flea 9 5100 0.5 3.0 1.8 3.2 5121 chrX 17195186 3` UTR baz + chrX 17197746 3` UTR baz + chrX 17200307 3` UTR baz + chrX_9_17195001 chrX_17195001 RAL-703 2026 chrX 17205834 17205851 chrX 17205943 17205961 4 108 3.5 5.0 4.2 0.8 127 chrX 17205834 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205961 intergenic CG32564 + chrX_4_17205001 chrX_17205001 RAL-703 2027 chrX 17434415 17434438 chrX 17434528 17434551 5 113 3.0 0.0 1.5 2.0 136 chrX 17434415 intron CG12994 - chrX 17434483 intron CG12994 - chrX 17434551 intron CG12994 - chrX_5_17430001 chrX_17430001 RAL-703 2028 chrX 17479913 17479928 chrX 17480014 17480025 4 102 4.0 2.5 3.2 1.0 112 chrX 17479913 intron CG43658 - chrX 17479969 intron CG43658 - chrX 17480025 intron CG43658 - chrX_4_17475001 chrX_17475001 RAL-703 2029 chrX 17502334 17502367 chrX 17502429 17502467 4 99 2.5 2.5 2.5 1.1 133 chrX 17502334 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502467 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-703 2030 chrX 17708815 17708850 chrX 17708912 17708914 5 90 2.5 3.5 3.0 1.2 99 chrX 17708815 intron CG8173 - chrX 17708864 intron CG8173 - chrX 17708914 intron CG8173 - chrX_5_17705001 chrX_17705001 RAL-703 2031 chrX 17784468 17784481 chrX 17784558 17784577 4 89 0.0 2.5 1.2 1.8 109 chrX 17784468 intergenic not near genes chrX 17784522 intergenic not near genes chrX 17784577 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-703 2032 chrX 17792938 17792980 chrX 17796256 17796298 flea 7 3316 0.0 1.5 0.8 3.9 3360 chrX 17792938 intron OdsH + chrX 17794618 intron OdsH + chrX 17796298 intron OdsH + chrX_7_17790001 chrX_17790001 RAL-703 2033 chrX 18126585 18126809 chrX 18126728 18126903 14 118 2.5 0.5 1.5 5.6 318 chrX 18126585 intron CG32553 - chrX 18126744 intron CG32553 - chrX 18126903 intron CG32553 - chrX_14_18125001 chrX_18125001 RAL-703 2034 chrX 18320477 18320502 chrX 18320629 18320653 4 152 1.5 3.0 2.2 1.2 176 chrX 18320477 intron CG6023 - chrX 18320565 intron CG6023 - chrX 18320653 intron CG6023 - chrX_4_18320001 chrX_18320001 RAL-703 2035 chrX 18490026 18490055 chrX 18490198 18490230 5 172 2.5 4.0 3.2 1.2 204 chrX 18490026 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490230 intergenic not near genes chrX_5_18490001 chrX_18490001 RAL-703 2036 chrX 18555365 18555371 chrX 18556899 18556913 transib2 4 1540 5.5 0.0 2.8 1.1 1548 chrX 18555365 intron Bx + chrX 18556139 intron Bx + chrX 18556913 intron Bx + chrX_4_18555001 chrX_18555001 RAL-703 2037 chrX 18644998 18645034 chrX 18645112 18645150 8 114 2.5 2.0 2.2 2.5 152 chrX 18644998 intron Rip11 - chrX 18645074 intron Rip11 - chrX 18645150 intron Rip11 - chrX_8_18645001 chrX_18645001 RAL-703 2038 chrX 18698830 18698837 chrX 18698965 18698970 5 135 2.5 3.0 2.8 1.3 140 chrX 18698830 intergenic not near genes chrX 18698900 intergenic not near genes chrX 18698970 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-703 2039 chrX 18768659 18768700 chrX 18768793 18768819 9 128 1.0 1.5 1.2 4.1 160 chrX 18768659 intron CCKLR-17D3 - chrX 18768739 intron CCKLR-17D3 - chrX 18768819 intron CCKLR-17D3 - chrX_9_18765001 chrX_18765001 RAL-703 2040 chrX 18957057 18957100 chrX 18965738 18965783 roo 8 8679 3.0 2.5 2.8 2.1 8726 chrX 18957057 intron CG43759 + chrX 18961420 intron CG43759 + chrX 18965783 intron CG43759 + chrX_8_18960001 chrX_18960001 RAL-703 2041 chrX 19014352 19014388 chrX 19014446 19014475 7 93 2.0 2.5 2.2 2.2 123 chrX 19014352 intron CG43759 + chrX 19014414 intron CG43759 + chrX 19014475 intron CG43759 + chrX_7_19010001 chrX_19010001 RAL-703 2042 chrX 19060393 19060435 chrX 19065196 19065239 Doc 8 4798 4.0 3.5 3.8 1.7 4846 chrX 19060393 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065239 intron CG14190 + chrX_8_19060001 chrX_19060001 RAL-703 2043 chrX 19073667 19073688 chrX 19073774 19073795 4 107 5.5 1.5 3.5 0.9 128 chrX 19073667 intergenic not near genes chrX 19073731 intergenic not near genes chrX 19073795 intergenic not near genes chrX_4_19070001 chrX_19070001 RAL-703 2044 chrX 19098762 19098779 chrX 19098859 19098875 5 97 0.5 3.0 1.8 1.8 113 chrX 19098762 intergenic not near genes chrX 19098818 intergenic not near genes chrX 19098875 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-703 2045 chrX 19101161 19101208 chrX 19101291 19101343 4 134 2.0 0.0 1.0 2.0 182 chrX 19101161 intergenic not near genes chrX 19101252 intergenic not near genes chrX 19101343 intergenic not near genes chrX_4_19100001 chrX_19100001 RAL-703 2046 chrX 19125678 19125721 chrX 19125824 19125870 9 143 2.5 3.0 2.8 2.4 192 chrX 19125678 intron tgy - chrX 19125774 intron tgy - chrX 19125870 intron tgy - chrX_9_19125001 chrX_19125001 RAL-703 2047 chrX 19136532 19136583 chrX 19143472 19143522 412 7 6933 0.5 1.0 0.8 3.9 6990 chrX 19136532 intergenic not near genes chrX 19140027 intergenic not near genes chrX 19143522 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-703 2048 chrX 19181996 19182040 chrX 19182126 19182159 4 128 1.5 1.0 1.2 1.8 163 chrX 19181996 3` UTR CG7453 + chrX 19182078 intergenic CG7453 + chrX 19182159 intergenic CG7453 + chrX_4_19180001 chrX_19180001 RAL-703 2049 chrX 19356979 19357023 chrX 19358440 19358502 NOF 4 1464 2.0 0.0 1.0 2.0 1523 chrX 19356979 intron kek5 + chrX 19357740 intron kek5 + chrX 19358502 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-703 2050 chrX 19380143 19380181 chrX 19380404 19380425 pogo 6 256 4.5 2.5 3.5 1.3 282 chrX 19380143 intron kek5 + chrX 19380284 intron kek5 + chrX 19380425 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-703 2051 chrX 19500542 19500751 chrX 19500639 19500843 17 98 1.5 3.0 2.2 5.3 301 chrX 19500542 intron,intron CG14200 +,Pfrx + chrX 19500692 intron,intron CG14200 +,Pfrx + chrX 19500843 intron,intron CG14200 +,Pfrx + chrX_17_19500001 chrX_19500001 RAL-703 2052 chrX 19541409 19541441 chrX 19541509 19541541 4 100 0.5 1.5 1.0 2.0 132 chrX 19541409 intron CG32532 - chrX 19541475 intron CG32532 - chrX 19541541 intron CG32532 - chrX_4_19540001 chrX_19540001 RAL-703 2053 chrX 19662010 19662057 chrX 19662253 19662254 12 236 2.5 2.5 2.5 3.4 244 chrX 19662010 intron CG14223 - chrX 19662132 intron CG14223 - chrX 19662254 intron CG14223 - chrX_12_19660001 chrX_19660001 RAL-703 2054 chrX 19797314 19797340 chrX 19804661 19804676 Stalker4 4 7344 3.5 2.5 3.0 1.0 7362 chrX 19797314 intergenic not near genes chrX 19800995 intergenic not near genes chrX 19804676 intergenic not near genes chrX_4_19800001 chrX_19800001 RAL-703 2055 chrX 19822817 19822860 chrX 19822999 19823046 10 183 4.0 4.5 4.2 1.9 229 chrX 19822817 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823046 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-703 2056 chrX 19881442 19881484 chrX 19881540 19881583 7 100 1.5 1.5 1.5 2.8 141 chrX 19881442 intron Hers + chrX 19881512 intron Hers + chrX 19881583 intron Hers + chrX_7_19880001 chrX_19880001 RAL-703 2057 chrX 19981232 19981235 chrX 19981315 19981323 4 92 0.0 4.5 2.2 1.2 91 chrX 19981232 intergenic not near genes chrX 19981278 intergenic not near genes chrX 19981323 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-703 2058 chrX 19984530 19984567 chrX 19984634 19984656 5 101 3.0 0.5 1.8 1.8 126 chrX 19984530 intergenic not near genes chrX 19984593 intergenic not near genes chrX 19984656 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-703 2059 chrX 20037191 20037215 chrX 20037392 20037416 6 199 1.0 1.0 1.0 3.0 225 chrX 20037191 intron Dop2R - chrX 20037304 intron Dop2R - chrX 20037416 intron Dop2R - chrX_6_20035001 chrX_20035001 RAL-703 2060 chrX 20041511 20041552 chrX 20041610 20041652 5 100 5.5 1.5 3.5 1.1 141 chrX 20041511 intron Dop2R - chrX 20041582 intron Dop2R - chrX 20041652 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-703 2061 chrX 20052771 20052810 chrX 20052869 20052907 11 98 2.0 3.0 2.5 3.1 136 chrX 20052771 intron Dop2R - chrX 20052839 intron Dop2R - chrX 20052907 intron Dop2R - chrX_11_20050001 chrX_20050001 RAL-703 2062 chrX 20232321 20232363 chrX 20232429 20232461 4 105 1.0 1.0 1.0 2.0 140 chrX 20232321 intron sw - chrX 20232391 intron sw - chrX 20232461 intron sw - chrX_4_20230001 chrX_20230001 RAL-703 2063 chrX 20279733 20279771 chrX 20279834 20279872 4 101 0.5 1.0 0.8 2.2 139 chrX 20279733 intergenic not near genes chrX 20279802 intergenic not near genes chrX 20279872 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-703 2064 chrX 20312888 20312910 chrX 20312975 20313008 7 94 3.0 4.0 3.5 1.6 120 chrX 20312888 intron CG1504 - chrX 20312948 intron CG1504 - chrX 20313008 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-703 2065 chrX 20374073 20374114 chrX 20374168 20374210 4 95 2.5 2.0 2.2 1.2 137 chrX 20374073 intergenic not near genes chrX 20374142 intergenic not near genes chrX 20374210 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-703 2066 chrX 20377325 20377349 chrX 20378812 20378816 hobo 5 1483 4.0 3.5 3.8 1.0 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-703 2067 chrX 20426181 20426225 chrX 20428372 20428406 6 2188 25.5 25.0 25.2 0.2 2225 chrX 20426181 exon cactin + chrX 20427294 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_6_20425001 chrX_20425001 RAL-703 2068 chrX 20435445 20435479 chrX 20435554 20435588 6 109 4.0 5.5 4.8 1.0 143 chrX 20435445 intron CG1695 + chrX 20435516 intron CG1695 + chrX 20435588 intron CG1695 + chrX_6_20435001 chrX_20435001 RAL-703 2069 chrX 20499138 20499184 chrX 20499241 20499285 7 100 0.5 2.5 1.5 2.8 147 chrX 20499138 intron RhoGAP19D - chrX 20499212 intron RhoGAP19D - chrX 20499285 intron RhoGAP19D - chrX_7_20495001 chrX_20495001 RAL-703 2070 chrX 20504120 20504153 chrX 20505660 20505694 transib2 7 1538 4.0 5.5 4.8 1.2 1574 chrX 20504120 intron RhoGAP19D - chrX 20504907 intron RhoGAP19D - chrX 20505694 intron RhoGAP19D - chrX_7_20500001 chrX_20500001 RAL-703 2071 chrX 20528590 20528629 chrX 20528957 20528997 7 367 2.0 1.5 1.8 2.5 407 chrX 20528590 intergenic not near genes chrX 20528794 intergenic not near genes chrX 20528997 intergenic not near genes chrX_7_20525001 chrX_20525001 RAL-703 2072 chrX 20578135 20578166 chrX 20578273 20578285 5 134 1.0 1.5 1.2 2.3 150 chrX 20578135 intergenic not near genes chrX 20578210 intergenic not near genes chrX 20578285 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-703 2073 chrX 20583719 20583758 chrX 20583909 20583959 7 194 0.0 0.0 0.0 7.0 240 chrX 20583719 intergenic not near genes chrX 20583839 intergenic not near genes chrX 20583959 intergenic not near genes chrX_7_20580001 chrX_20580001 RAL-703 2074 chrX 20662306 20662343 chrX 20662409 20662442 5 100 2.0 0.5 1.2 2.3 136 chrX 20662306 intron CG1835 + chrX 20662374 intron CG1835 + chrX 20662442 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-703 2075 chrX 20710414 20710430 chrX 20710511 20710524 4 96 1.0 0.5 0.8 2.2 110 chrX 20710414 intergenic not near genes chrX 20710469 intergenic not near genes chrX 20710524 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-703 2076 chrX 20940719 20940740 chrX 20942190 20942202 hobo 4 1478 3.0 2.0 2.5 1.1 1483 chrX 20940719 intergenic not near genes chrX 20941460 intergenic not near genes chrX 20942202 intergenic not near genes chrX_4_20940001 chrX_20940001 RAL-703 2077 chrX 21028683 21028723 chrX 21028889 21028923 5 204 1.5 1.0 1.2 2.3 240 chrX 21028683 3` UTR CG1529 - chrX 21028803 3` UTR CG1529 - chrX 21028923 3` UTR CG1529 - chrX_5_21025001 chrX_21025001 RAL-703 2078 chrX 21076330 21076348 chrX 21076417 21076447 4 96 4.0 1.0 2.5 1.1 117 chrX 21076330 intron bves + chrX 21076388 intron bves + chrX 21076447 intron bves + chrX_4_21075001 chrX_21075001 RAL-703 2079 chrX 21078756 21078768 chrX 21078854 21078865 4 97 1.5 1.0 1.2 1.8 109 chrX 21078756 intron bves + chrX 21078810 intron bves + chrX 21078865 intron bves + chrX_4_21075001 chrX_21075001 RAL-703 2080 chrX 21078769 21078782 chrX 21078848 21078877 4 86 0.5 1.0 0.8 2.2 108 chrX 21078769 intron bves + chrX 21078823 intron bves + chrX 21078877 intron bves + chrX_4_21075001 chrX_21075001 RAL-703 2081 chrX 21087426 21087440 chrX 21087529 21087541 4 100 3.5 2.0 2.8 1.1 115 chrX 21087426 intergenic not near genes chrX 21087484 intergenic not near genes chrX 21087541 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-703 2082 chrX 21197043 21197081 chrX 21197139 21197179 8 94 3.0 2.0 2.5 2.3 136 chrX 21197043 intergenic not near genes chrX 21197111 intergenic not near genes chrX 21197179 intergenic not near genes chrX_8_21195001 chrX_21195001 RAL-703 2083 chrX 21410643 21410672 chrX 21410743 21410772 6 100 3.0 2.5 2.8 1.6 129 chrX 21410643 intergenic CR45003 - chrX 21410708 intergenic CR45003 - chrX 21410772 intergenic CR45003 - chrX_6_21410001 chrX_21410001 RAL-703 2084 chrX 21500553 21500589 chrX 21500774 21500790 6 214 0.0 3.0 1.5 2.4 237 chrX 21500553 intron CR45082 - chrX 21500672 intron CR45082 - chrX 21500790 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-703 2085 chrX 21509994 21509999 chrX 21510103 21510108 4 109 0.0 3.0 1.5 1.6 114 chrX 21509994 intron CR45082 - chrX 21510051 intron CR45082 - chrX 21510108 intron CR45082 - chrX_4_21510001 chrX_21510001 RAL-703 2086 chrX 21565400 21565433 chrX 21565492 21565529 6 95 3.0 1.0 2.0 2.0 129 chrX 21565400 intergenic not near genes chrX 21565464 intergenic not near genes chrX 21565529 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-703 2087 chrX 21573876 21573910 chrX 21573983 21574017 5 104 2.0 1.5 1.8 1.8 141 chrX 21573876 intergenic not near genes chrX 21573946 intergenic not near genes chrX 21574017 intergenic not near genes chrX_5_21570001 chrX_21570001 RAL-703 2088 chrX 21668246 21668280 chrX 21668351 21668385 6 103 13.0 9.5 11.2 0.5 139 chrX 21668246 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668385 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-703 2089 chrX 22448249 22448268 chrX 22448408 22448417 4 156 5.0 1.5 3.2 1.0 168 chrX 22448249 intron CG14615 - chrX 22448333 intron CG14615 - chrX 22448417 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-703 2090 chrX 22478874 22478893 chrX 22479027 22479036 5 149 0.0 1.0 0.5 3.3 162 chrX 22478874 intron CG12576 - chrX 22478955 intron CG12576 - chrX 22479036 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-703 2091 chrX 22544419 22544435 chrX 22544519 22544535 4 100 2.0 0.5 1.2 1.8 116 chrX 22544419 intergenic CG17599 - chrX 22544477 intergenic CG17599 - chrX 22544535 intergenic CG17599 - chrX_4_22540001 chrX_22540001 RAL-703 2092 chrX 22564562 22564579 chrX 22575121 22575131 jockey 4 10554 12.0 4.0 8.0 0.4 10569 chrX 22564562 intergenic not near genes chrX 22569846 intergenic not near genes chrX 22575131 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-703 2093 chrX 22697479 22697513 chrX 22701796 22701830 Juan 6 4314 3.5 4.5 4.0 1.2 4351 chrX 22697479 intron CR44997 + chrX 22699654 intron CR44997 + chrX 22701830 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-703 2094 chrX 22867959 22868011 chrX 22868092 22868153 13 133 0.0 0.5 0.2 10.8 194 chrX 22867959 exon CG42346 + chrX 22868056 intron CG42346 + chrX 22868153 intron CG42346 + chrX_13_22865001 chrX_22865001 RAL-703 2095 chrX 22870854 22870901 chrX 22870963 22871012 8 105 3.0 4.5 3.8 1.7 158 chrX 22870854 intron,3` UTR CG42346 +,CR43656 - chrX 22870933 intron,3` UTR CG42346 +,CR43656 - chrX 22871012 intron,3` UTR CG42346 +,CR43656 - chrX_8_22870001 chrX_22870001 RAL-703 2096 chrX 22895705 22895748 chrX 22895843 22895872 6 134 3.0 3.0 3.0 1.5 167 chrX 22895705 intergenic not near genes chrX 22895788 intergenic not near genes chrX 22895872 intergenic not near genes chrX_6_22895001 chrX_22895001 RAL-703 2097 chrX 22996291 22996333 chrX 23003545 23003587 roo 9 7253 3.0 1.5 2.2 2.8 7296 chrX 22996291 intron,intron stnA -,stnB - chrX 22999939 intron,intron stnA -,stnB - chrX 23003587 intron,intron stnA -,stnB - chrX_9_22995001 chrX_22995001 RAL-703 2098 chrY 975773 975828 chrY 975871 975936 6 112 76.5 80.5 78.5 0.1 163 chrY 975773 intergenic not near genes chrY 975854 intergenic not near genes chrY 975936 intergenic not near genes chrY_6_975001 chrY_975001 RAL-703 2099 chrY 1419889 1419901 chrY 1420163 1420175 4 272 7.5 3.0 5.2 0.6 286 chrY 1419889 intergenic not near genes chrY 1420032 intergenic not near genes chrY 1420175 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-703