SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	347886	347918	chr2L	355386	355418	blood	5	7500	2.5	1.0	1.8	1.8	7532	chr2L	347886	3` UTR	Plc21C +	chr2L	351652	intron	Plc21C +	chr2L	355418	3` UTR	Plc21C +	chr2L_5_350001	chr2L_350001	RAL-646
3	chr2L	686921	686950	chr2L	695957	695990	roo	5	9035	1.0	1.5	1.2	2.3	9069	chr2L	686921	intron	ds -	chr2L	691456	intron	ds -	chr2L	695990	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-646
6	chr2L	770470	770493	chr2L	772244	772269	Bari1	5	1772	1.5	2.5	2.0	1.7	1799	chr2L	770470	intergenic	not near genes	chr2L	771370	intergenic	not near genes	chr2L	772269	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-646
11	chr2L	976886	976909	chr2L	984522	984542	roo	7	7635	2.5	0.0	1.2	3.2	7656	chr2L	976886	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984542	intergenic	not near genes	chr2L_7_980001	chr2L_980001	RAL-646
15	chr2L	1220135	1220140	chr2L	1227601	1227606	blood	4	7466	5.5	1.5	3.5	0.9	7471	chr2L	1220135	intron	CG42329 +	chr2L	1223870	intron	CG42329 +	chr2L	1227606	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-646
16	chr2L	1220141	1220161	chr2L	1227594	1227627	blood	5	7463	2.0	1.0	1.5	2.0	7486	chr2L	1220141	intron	CG42329 +	chr2L	1223884	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_5_1220001	chr2L_1220001	RAL-646
20	chr2L	1711358	1711384	chr2L	1711682	1711707	mdg3	9	321	2.0	3.5	2.8	2.4	349	chr2L	1711358	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711707	3` UTR	frtz -	chr2L_9_1710001	chr2L_1710001	RAL-646
26	chr2L	2100375	2100408	chr2L	2109526	2109546	roo	7	9149	2.5	2.0	2.2	2.2	9171	chr2L	2100375	intron	dpr3 -	chr2L	2104960	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_7_2100001	chr2L_2100001	RAL-646
30	chr2L	3073033	3073060	chr2L	3078236	3078263	copia	6	5203	0.0	1.5	0.8	3.3	5230	chr2L	3073033	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078263	intron	toc -	chr2L_6_3075001	chr2L_3075001	RAL-646
35	chr2L	3251496	3251525	chr2L	3259060	3259090	springer	4	7565	1.5	0.5	1.0	2.0	7594	chr2L	3251496	intergenic	not near genes	chr2L	3255293	intergenic	not near genes	chr2L	3259090	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-646
50	chr2L	4601703	4601737	chr2L	4609144	4609178	mdg1	13	7440	3.0	3.0	3.0	3.2	7475	chr2L	4601703	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609178	intron	dp -	chr2L_13_4605001	chr2L_4605001	RAL-646
58	chr2L	5827712	5827741	chr2L	5836719	5836749	roo	5	9007	1.5	1.5	1.5	2.0	9037	chr2L	5827712	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-646
64	chr2L	6426858	6426889	chr2L	6445118	6445149	roo	11	18260	2.5	3.0	2.8	2.9	18291	chr2L	6426858	3` UTR	CG9527 -	chr2L	6436004	intron	CG9527 -	chr2L	6445149	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	RAL-646
72	chr2L	7959049	7959060	chr2L	7960460	7960471	pogo	4	1411	1.5	0.5	1.0	2.0	1422	chr2L	7959049	intron	Snoo -	chr2L	7959760	intron	Snoo -	chr2L	7960471	intron	Snoo -	chr2L_4_7955001	chr2L_7955001	RAL-646
73	chr2L	7977092	7977110	chr2L	7984068	7984086	297	9	6975	0.5	2.5	1.5	3.6	6994	chr2L	7977092	intron	Snoo -	chr2L	7980589	intron	Snoo -	chr2L	7984086	intron,5` UTR	Snoo -,CG7231 +	chr2L_9_7980001	chr2L_7980001	RAL-646
82	chr2L	9000282	9000307	chr2L	9007792	9007817	roo	8	7510	0.5	0.0	0.2	6.7	7535	chr2L	9000282	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007817	intergenic	not near genes	chr2L_8_9000001	chr2L_9000001	RAL-646
87	chr2L	9393500	9393531	chr2L	9396465	9396498	jockey	9	2965	3.0	4.5	3.8	1.9	2998	chr2L	9393500	intron	Shawl -	chr2L	9394999	intron	Shawl -	chr2L	9396498	intron	Shawl -	chr2L_9_9390001	chr2L_9390001	RAL-646
91	chr2L	9973730	9973758	chr2L	9980843	9980877	HMS-Beagle	14	7115	4.0	2.0	3.0	3.5	7147	chr2L	9973730	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980877	intergenic	not near genes	chr2L_14_9975001	chr2L_9975001	RAL-646
98	chr2L	10862847	10862875	chr2L	10864460	10864489	Rt1c	9	1612	4.0	6.5	5.2	1.5	1642	chr2L	10862847	3` UTR	CR43807 -	chr2L	10863668	intron	CR43807 -	chr2L	10864489	3` UTR	CR43807 -	chr2L_9_10860001	chr2L_10860001	RAL-646
100	chr2L	10946955	10946977	chr2L	10956168	10956192	roo	12	9215	1.5	8.0	4.8	2.1	9237	chr2L	10946955	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_12_10950001	chr2L_10950001	RAL-646
106	chr2L	11563640	11563669	chr2L	11568844	11568873	copia	7	5204	3.0	5.0	4.0	1.4	5233	chr2L	11563640	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568873	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-646
116	chr2L	12558328	12558346	chr2L	12565456	12565474	HMS-Beagle	7	7128	0.5	1.5	1.0	3.5	7146	chr2L	12558328	intergenic	not near genes	chr2L	12561901	intergenic	not near genes	chr2L	12565474	intergenic	not near genes	chr2L_7_12560001	chr2L_12560001	RAL-646
117	chr2L	12731056	12731082	chr2L	12735823	12735849	F-element	4	4767	1.0	1.0	1.0	2.0	4793	chr2L	12731056	intron	MRP +	chr2L	12733452	intron	MRP +	chr2L	12735849	intron	MRP +	chr2L_4_12730001	chr2L_12730001	RAL-646
118	chr2L	12739175	12739203	chr2L	12743955	12743984	Doc	6	4781	2.0	4.0	3.0	1.5	4809	chr2L	12739175	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743984	exon	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-646
119	chr2L	12861693	12861730	chr2L	12863160	12863180	hobo	11	1462	2.5	2.5	2.5	3.1	1487	chr2L	12861693	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863180	intergenic	not near genes	chr2L_11_12860001	chr2L_12860001	RAL-646
120	chr2L	12933849	12933883	chr2L	12941316	12941348	blood	6	7465	2.0	3.5	2.8	1.6	7499	chr2L	12933849	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941348	intergenic	not near genes	chr2L_6_12935001	chr2L_12935001	RAL-646
124	chr2L	13405657	13405665	chr2L	13410444	13410462	Doc	4	4794	5.0	1.5	3.2	1.0	4805	chr2L	13405657	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410462	intron	CG7110 +	chr2L_4_13405001	chr2L_13405001	RAL-646
125	chr2L	13449461	13449484	chr2L	13456897	13456920	Quasimodo	4	7436	3.5	1.0	2.2	1.2	7459	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453190	intron	CG42784 +	chr2L	13456920	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	RAL-646
126	chr2L	13481452	13481469	chr2L	13482057	13482076	jockey	4	606	2.5	5.0	3.8	0.8	624	chr2L	13481452	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482076	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-646
130	chr2L	13761825	13761835	chr2L	13762935	13762946	Doc	4	1110	3.0	1.5	2.2	1.2	1121	chr2L	13761825	intron	TM9SF4 +	chr2L	13762386	intron	TM9SF4 +	chr2L	13762946	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-646
132	chr2L	13853083	13853112	chr2L	13862233	13862262	roo	7	9147	1.5	1.0	1.2	3.2	9179	chr2L	13853083	intron	CenG1A +	chr2L	13857672	intron	CenG1A +	chr2L	13862262	intron	CenG1A +	chr2L_7_13855001	chr2L_13855001	RAL-646
139	chr2L	14642569	14642604	chr2L	14651732	14651767	roo	5	9163	2.5	2.5	2.5	1.4	9198	chr2L	14642569	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651767	intron	osp -	chr2L_5_14645001	chr2L_14645001	RAL-646
143	chr2L	14803886	14803909	chr2L	14809081	14809110	copia	8	5196	3.5	2.5	3.0	2.0	5224	chr2L	14803886	intergenic	not near genes	chr2L	14806498	intergenic	not near genes	chr2L	14809110	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	RAL-646
145	chr2L	14889960	14889986	chr2L	14890385	14890410	jockey	6	425	1.5	1.5	1.5	2.4	450	chr2L	14889960	intergenic	not near genes	chr2L	14890185	intergenic	not near genes	chr2L	14890410	intergenic	not near genes	chr2L_6_14890001	chr2L_14890001	RAL-646
153	chr2L	15586417	15586438	chr2L	15593469	15593490	297	6	7051	0.0	1.0	0.5	4.0	7073	chr2L	15586417	intergenic	not near genes	chr2L	15589954	intergenic	not near genes	chr2L	15593490	intergenic	not near genes	chr2L_6_15585001	chr2L_15585001	RAL-646
158	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	7	145889	9.0	13.5	11.2	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-646
160	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	6	145889	9.0	13.5	11.2	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-646
163	chr2L	16280259	16280287	chr2L	16281426	16281441	1360	8	1165	5.0	5.5	5.2	1.3	1182	chr2L	16280259	intron	crp -	chr2L	16280850	intron	crp -	chr2L	16281441	intron	crp -	chr2L_8_16280001	chr2L_16280001	RAL-646
170	chr2L	17273193	17273227	chr2L	17277976	17278010	F-element	6	4783	2.0	2.5	2.2	1.9	4817	chr2L	17273193	intergenic	not near genes	chr2L	17275602	intergenic	not near genes	chr2L	17278010	intergenic	not near genes	chr2L_6_17275001	chr2L_17275001	RAL-646
176	chr2L	17911965	17911985	chr2L	17914143	17914163	pogo	4	2178	2.5	1.5	2.0	1.3	2198	chr2L	17911965	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914163	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-646
178	chr2L	18051882	18051899	chr2L	18061026	18061046	roo	4	9146	2.0	2.0	2.0	1.3	9164	chr2L	18051882	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061046	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-646
191	chr2L	19147373	19147400	chr2L	19154408	19154435	297	4	7035	2.0	1.5	1.8	1.4	7062	chr2L	19147373	intron	brat +	chr2L	19150904	intron	brat +	chr2L	19154435	intron	brat +	chr2L_4_19150001	chr2L_19150001	RAL-646
197	chr2L	19620100	19620131	chr2L	19621089	19621117	jockey	8	988	5.0	6.5	5.8	1.2	1017	chr2L	19620100	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621117	intron	Lar +	chr2L_8_19620001	chr2L_19620001	RAL-646
198	chr2L	19652569	19652601	chr2L	19674004	19674032	opus	4	21432	2.0	0.5	1.2	1.8	21463	chr2L	19652569	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674032	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-646
199	chr2L	19703549	19703562	chr2L	19712683	19712698	roo	4	9134	2.5	2.0	2.2	1.2	9149	chr2L	19703549	intron	Lar +	chr2L	19708124	intron	Lar +	chr2L	19712698	intron	Lar +	chr2L_4_19705001	chr2L_19705001	RAL-646
200	chr2L	19737368	19737379	chr2L	19740836	19740848	1360	7	3467	4.0	4.0	4.0	1.4	3480	chr2L	19737368	intergenic	Nf-YB +	chr2L	19739108	intergenic	not near genes	chr2L	19740848	intergenic	not near genes	chr2L_7_19735001	chr2L_19735001	RAL-646
201	chr2L	19737381	19737389	chr2L	19740835	19740838	1360	4	3452	3.5	4.0	3.8	0.8	3457	chr2L	19737381	intergenic	Nf-YB +	chr2L	19739110	intergenic	not near genes	chr2L	19740838	intergenic	not near genes	chr2L_4_19735001	chr2L_19735001	RAL-646
204	chr2L	20005882	20005903	chr2L	20010957	20010979	flea	4	5076	0.5	4.0	2.2	1.2	5097	chr2L	20005882	intron	CG43861 -	chr2L	20008430	intron	CG43861 -	chr2L	20010979	intron	CG43861 -	chr2L_4_20005001	chr2L_20005001	RAL-646
209	chr2L	20568667	20568684	chr2L	20569057	20569071	X-element	4	389	1.0	2.0	1.5	1.6	404	chr2L	20568667	intron	CR45347 +	chr2L	20568869	intron	CR45347 +	chr2L	20569071	intron	CR45347 +	chr2L_4_20565001	chr2L_20565001	RAL-646
211	chr2L	20576218	20576251	chr2L	20583685	20583719	blood	5	7468	2.0	1.5	1.8	1.8	7501	chr2L	20576218	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-646
216	chr2L	20901472	20901484	chr2L	20902636	20902648	1360	5	1164	2.0	3.5	2.8	1.3	1176	chr2L	20901472	intron,intron	CG43739 -,sky -	chr2L	20902060	intron,intron	CG43739 -,sky -	chr2L	20902648	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-646
217	chr2L	20976645	20976669	chr2L	20981460	20981483	X-element	5	4814	0.5	2.0	1.2	2.3	4838	chr2L	20976645	intron	CG42238 -	chr2L	20979064	intron	CG42238 -	chr2L	20981483	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-646
218	chr2L	21020286	21020309	chr2L	21023963	21023985	NOF	11	3676	1.5	2.5	2.0	3.7	3699	chr2L	21020286	intron	CG42238 -	chr2L	21022136	intron	CG42238 -	chr2L	21023985	intron	CG42238 -	chr2L_11_21020001	chr2L_21020001	RAL-646
226	chr2L	21981683	21981711	chr2L	21990848	21990876	roo	9	9165	3.0	2.5	2.8	2.4	9193	chr2L	21981683	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990876	exon	CG2528 -	chr2L_9_21985001	chr2L_21985001	RAL-646
229	chr2L	22719435	22719467	chr2L	22727558	22727590	gypsy2	5	8122	1.5	1.5	1.5	2.0	8155	chr2L	22719435	intron	CG40006 -	chr2L	22723512	intron	CG40006 -	chr2L	22727590	intron	CG40006 -	chr2L_5_22720001	chr2L_22720001	RAL-646
232	chr2R	4622953	4622982	chr2R	4624112	4624141	1360	10	1159	3.5	1.0	2.2	3.1	1188	chr2R	4622953	intergenic	CR44101 -	chr2R	4623547	intergenic	not near genes	chr2R	4624141	intergenic	not near genes	chr2R_10_4620001	chr2R_4620001	RAL-646
233	chr2R	4624641	4624666	chr2R	4626546	4626571	Bica	7	1905	3.5	1.5	2.5	2.0	1930	chr2R	4624641	intergenic	not near genes	chr2R	4625606	intergenic	not near genes	chr2R	4626571	intergenic	not near genes	chr2R_7_4625001	chr2R_4625001	RAL-646
241	chr2R	5869284	5869308	chr2R	5874354	5874384	flea	4	5074	2.5	2.0	2.2	1.2	5100	chr2R	5869284	intergenic	not near genes	chr2R	5871834	intergenic	not near genes	chr2R	5874384	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-646
250	chr2R	7869195	7869211	chr2R	7873981	7873997	Doc	9	4786	2.5	5.0	3.8	1.9	4802	chr2R	7869195	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7873997	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	RAL-646
257	chr2R	8160937	8160953	chr2R	8161026	8161043	1360	7	90	3.5	7.0	5.2	1.1	106	chr2R	8160937	intron	CG8708 -	chr2R	8160990	intron	CG8708 -	chr2R	8161043	intron	CG8708 -	chr2R_7_8160001	chr2R_8160001	RAL-646
258	chr2R	8330868	8330883	chr2R	8331353	8331368	roo	4	483	2.0	2.0	2.0	1.3	500	chr2R	8330868	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331368	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-646
260	chr2R	8398222	8398241	chr2R	8403003	8403022	Doc	5	4781	5.5	6.0	5.8	0.7	4800	chr2R	8398222	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403022	intron	CG2121 -	chr2R_5_8400001	chr2R_8400001	RAL-646
266	chr2R	8722763	8722790	chr2R	8723004	8723031	pogo	12	236	2.5	3.0	2.8	3.2	268	chr2R	8722763	intron	CG14767 -	chr2R	8722897	intron	CG14767 -	chr2R	8723031	intron	CG14767 -	chr2R_12_8720001	chr2R_8720001	RAL-646
269	chr2R	9212706	9212723	chr2R	9213185	9213195	roo	4	480	3.5	6.0	4.8	0.7	489	chr2R	9212706	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213195	5` UTR	CR45309 +	chr2R_4_9210001	chr2R_9210001	RAL-646
276	chr2R	9871039	9871068	chr2R	9871525	9871554	roo	5	486	2.0	4.0	3.0	1.2	515	chr2R	9871039	intron	cbx -	chr2R	9871296	intron	cbx -	chr2R	9871554	intron,5` UTR	cbx -,CG18446 +	chr2R_5_9870001	chr2R_9870001	RAL-646
277	chr2R	9945436	9945469	chr2R	9945625	9945665	BS	10	194	2.5	1.0	1.8	3.6	229	chr2R	9945436	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945665	intron	Mef2 -	chr2R_10_9945001	chr2R_9945001	RAL-646
283	chr2R	10948026	10948055	chr2R	10955576	10955601	17.6	7	7546	2.0	2.0	2.0	2.3	7575	chr2R	10948026	intergenic	not near genes	chr2R	10951814	intergenic	not near genes	chr2R	10955601	intergenic	not near genes	chr2R_7_10950001	chr2R_10950001	RAL-646
284	chr2R	11009818	11009847	chr2R	11018990	11019006	roo	5	9170	1.0	4.0	2.5	1.4	9188	chr2R	11009818	intron	luna -	chr2R	11014412	intron	luna -	chr2R	11019006	intron	luna -	chr2R_5_11010001	chr2R_11010001	RAL-646
295	chr2R	12501704	12501718	chr2R	12503866	12503880	Rt1c	4	2160	5.5	4.5	5.0	0.7	2176	chr2R	12501704	intron	fdl -	chr2R	12502792	intron	fdl -	chr2R	12503880	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-646
299	chr2R	12789300	12789328	chr2R	12797656	12797687	roo	5	8357	2.0	2.5	2.2	1.6	8387	chr2R	12789300	intron,3` UTR	sca +,CR45137 -	chr2R	12793494	intron,intron	sca +,CR45137 -	chr2R	12797687	intron,3` UTR	sca +,CR45137 -	chr2R_5_12790001	chr2R_12790001	RAL-646
300	chr2R	13136843	13136864	chr2R	13141641	13141662	Doc	7	4798	9.0	5.5	7.2	0.9	4819	chr2R	13136843	exon	Cap-G +	chr2R	13139252	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_7_13135001	chr2R_13135001	RAL-646
304	chr2R	13905603	13905634	chr2R	13907579	13907593	Rt1a	6	1973	0.5	4.0	2.2	1.9	1990	chr2R	13905603	intron	shot -	chr2R	13906598	intron	shot -	chr2R	13907593	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-646
317	chr2R	15004725	15004754	chr2R	15005054	15005083	jockey	5	328	1.5	0.5	1.0	2.5	358	chr2R	15004725	intergenic	not near genes	chr2R	15004904	intergenic	not near genes	chr2R	15005083	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-646
318	chr2R	15015457	15015489	chr2R	15022881	15022912	mdg1	13	7423	1.5	2.5	2.0	4.3	7455	chr2R	15015457	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022912	intron	hbs +	chr2R_13_15015001	chr2R_15015001	RAL-646
320	chr2R	15119316	15119348	chr2R	15127797	15127817	Tirant	5	8477	1.5	2.0	1.8	1.8	8501	chr2R	15119316	intron	chn +	chr2R	15123566	intron	chn +	chr2R	15127817	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-646
332	chr2R	17147245	17147261	chr2R	17152273	17152292	jockey	8	5030	2.5	4.0	3.2	1.9	5047	chr2R	17147245	intergenic	not near genes	chr2R	17149768	intergenic	not near genes	chr2R	17152292	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	RAL-646
334	chr2R	17236510	17236524	chr2R	17241714	17241728	copia	5	5204	3.0	3.5	3.2	1.2	5218	chr2R	17236510	intron	mbl +	chr2R	17239119	intron	mbl +	chr2R	17241728	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-646
337	chr2R	17784053	17784057	chr2R	17784282	17784298	pogo	4	238	0.0	7.0	3.5	0.9	245	chr2R	17784053	intergenic	mir-31a -	chr2R	17784176	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_4_17780001	chr2R_17780001	RAL-646
342	chr2R	18358404	18358421	chr2R	18372615	18372633	roo	6	14212	1.0	3.0	2.0	2.0	14229	chr2R	18358404	intergenic	not near genes	chr2R	18365518	intergenic	not near genes	chr2R	18372633	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	RAL-646
344	chr2R	18590875	18590899	chr2R	18600020	18600043	roo	8	9148	2.0	1.5	1.8	2.9	9168	chr2R	18590875	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600043	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-646
351	chr2R	19914849	19914877	chr2R	19922261	19922267	mdg1	5	7408	0.5	3.5	2.0	1.7	7418	chr2R	19914849	intergenic	not near genes	chr2R	19918558	intergenic	not near genes	chr2R	19922267	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-646
352	chr2R	19957439	19957461	chr2R	19962640	19962663	copia	7	5197	2.5	6.5	4.5	1.3	5224	chr2R	19957439	intergenic	CG44623 +	chr2R	19960051	intergenic	not near genes	chr2R	19962663	intergenic	not near genes	chr2R_7_19960001	chr2R_19960001	RAL-646
358	chr2R	20739444	20739477	chr2R	20744212	20744245	F-element	4	4768	2.5	3.5	3.0	1.0	4801	chr2R	20739444	intron	dpr +	chr2R	20741844	intron	dpr +	chr2R	20744245	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-646
359	chr2R	20783318	20783333	chr2R	20788089	20788105	F-element	6	4772	2.5	2.0	2.2	1.9	4787	chr2R	20783318	intergenic	not near genes	chr2R	20785712	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-646
367	chr2R	21738279	21738299	chr2R	21747437	21747448	roo	4	9156	2.0	1.0	1.5	1.6	9169	chr2R	21738279	intergenic	not near genes	chr2R	21742864	intergenic	not near genes	chr2R	21747448	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-646
369	chr2R	21753086	21753115	chr2R	21753571	21753585	roo	5	479	3.5	3.5	3.5	1.1	499	chr2R	21753086	intergenic	not near genes	chr2R	21753336	intergenic	not near genes	chr2R	21753585	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-646
373	chr2R	22349697	22349722	chr2R	22351480	22351487	jockey	4	1779	2.0	4.0	3.0	1.0	1790	chr2R	22349697	intron	Liprin-gamma -	chr2R	22350592	intron	Liprin-gamma -	chr2R	22351487	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-646
383	chr2R	23914321	23914332	chr2R	23921945	23921956	412	7	7623	2.5	3.5	3.0	1.8	7635	chr2R	23914321	exon	kcc +	chr2R	23918138	intron	kcc +	chr2R	23921956	intron	kcc +	chr2R_7_23915001	chr2R_23915001	RAL-646
385	chr2R	24147066	24147094	chr2R	24154644	24154672	412	8	7578	3.0	2.5	2.8	2.1	7606	chr2R	24147066	intron	Dat +	chr2R	24150869	intron	Dat +	chr2R	24154672	intron	Dat +	chr2R_8_24150001	chr2R_24150001	RAL-646
386	chr2R	24177247	24177260	chr2R	24184721	24184721	412	4	7476	1.0	1.5	1.2	1.8	7474	chr2R	24177247	3` UTR	Nop60B +	chr2R	24180984	intron	Nop60B +	chr2R	24184721	intron	Nop60B +	chr2R_4_24180001	chr2R_24180001	RAL-646
388	chr2R	24353428	24353451	chr2R	24361789	24361798	roo	7	8357	0.5	2.5	1.5	2.8	8370	chr2R	24353428	intron,intron	bs +,CR44811 -	chr2R	24357613	intron,intron	bs +,CR44811 -	chr2R	24361798	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-646
393	chr2R	24727884	24727918	chr2R	24735392	24735426	mdg1	13	7505	1.5	2.0	1.8	4.6	7542	chr2R	24727884	intron	Mid1 -	chr2R	24731655	intron	Mid1 -	chr2R	24735426	intron	Mid1 -	chr2R_13_24730001	chr2R_24730001	RAL-646
394	chr2R	24763608	24763643	chr2R	24765584	24765594	G2	11	1973	2.0	4.0	3.0	2.8	1986	chr2R	24763608	exon	CG3894 +	chr2R	24764601	intron	CG3894 +	chr2R	24765594	exon	CG3894 +	chr2R_11_24760001	chr2R_24760001	RAL-646
402	chr3L	402690	402715	chr3L	409743	409768	297	9	7051	4.5	4.5	4.5	1.6	7078	chr3L	402690	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409768	intergenic	not near genes	chr3L_9_405001	chr3L_405001	RAL-646
408	chr3L	789913	789943	chr3L	790398	790412	roo	5	481	0.5	1.5	1.0	2.5	499	chr3L	789913	intergenic	not near genes	chr3L	790162	intergenic	not near genes	chr3L	790412	intergenic	not near genes	chr3L_5_790001	chr3L_790001	RAL-646
409	chr3L	858001	858030	chr3L	866480	866491	Tirant	5	8473	2.5	2.0	2.2	1.6	8490	chr3L	858001	intergenic	not near genes	chr3L	862246	intergenic	not near genes	chr3L	866491	intergenic	CG12502 +	chr3L_5_860001	chr3L_860001	RAL-646
418	chr3L	1506007	1506030	chr3L	1513604	1513627	17.6	7	7596	0.0	4.0	2.0	2.3	7620	chr3L	1506007	intron,intron	Psa +,cue -	chr3L	1509817	intron,intron	Psa +,cue -	chr3L	1513627	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-646
424	chr3L	2447510	2447534	chr3L	2456666	2456690	roo	10	9152	2.0	3.0	2.5	2.9	9180	chr3L	2447510	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456690	intron	CG45186 +	chr3L_10_2450001	chr3L_2450001	RAL-646
428	chr3L	2927838	2927858	chr3L	2936115	2936135	Tirant	6	8277	2.5	2.5	2.5	1.7	8297	chr3L	2927838	intron	Shab +	chr3L	2931986	intron	Shab +	chr3L	2936135	intron	Shab +	chr3L_6_2930001	chr3L_2930001	RAL-646
429	chr3L	3281454	3281459	chr3L	3281944	3281955	Doc	4	492	4.5	5.5	5.0	0.7	501	chr3L	3281454	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281955	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-646
430	chr3L	3281460	3281462	chr3L	3281941	3281957	Doc	4	492	4.5	5.0	4.8	0.7	497	chr3L	3281460	intron	CG12017 +	chr3L	3281708	intron	CG12017 +	chr3L	3281957	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-646
431	chr3L	3281463	3281478	chr3L	3281940	3281971	Doc	8	493	3.5	5.0	4.2	1.5	508	chr3L	3281463	intron	CG12017 +	chr3L	3281717	intron	CG12017 +	chr3L	3281971	intron	CG12017 +	chr3L_8_3280001	chr3L_3280001	RAL-646
433	chr3L	3475076	3475109	chr3L	3475520	3475553	jockey	9	441	1.0	3.5	2.2	2.8	477	chr3L	3475076	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_9_3475001	chr3L_3475001	RAL-646
435	chr3L	3601296	3601332	chr3L	3606607	3606643	copia	7	5309	3.0	0.5	1.8	2.5	5347	chr3L	3601296	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606643	intron	Eip63E +	chr3L_7_3600001	chr3L_3600001	RAL-646
445	chr3L	5034162	5034191	chr3L	5043314	5043343	roo	4	9151	3.0	0.5	1.8	1.4	9181	chr3L	5034162	intron	Con -	chr3L	5038752	intron	Con -	chr3L	5043343	intron	Con -	chr3L_4_5035001	chr3L_5035001	RAL-646
453	chr3L	5910032	5910064	chr3L	5910272	5910305	pogo	6	241	0.5	0.5	0.5	4.0	273	chr3L	5910032	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910305	intron	CG13288 +	chr3L_6_5910001	chr3L_5910001	RAL-646
455	chr3L	6040370	6040392	chr3L	6042725	6042746	Doc	7	2353	0.5	2.0	1.2	3.2	2376	chr3L	6040370	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042746	intergenic	not near genes	chr3L_7_6040001	chr3L_6040001	RAL-646
456	chr3L	6220929	6220945	chr3L	6230070	6230090	roo	5	9148	2.5	2.0	2.2	1.6	9161	chr3L	6220929	5` UTR	pncr008:3L +	chr3L	6225510	intergenic	not near genes	chr3L	6230090	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-646
474	chr3L	7793717	7793742	chr3L	7800769	7800794	297	7	7051	0.5	0.5	0.5	4.7	7077	chr3L	7793717	intron	CG32369 -	chr3L	7797256	intron	CG32369 -	chr3L	7800794	intron	CG32369 -	chr3L_7_7795001	chr3L_7795001	RAL-646
475	chr3L	7886529	7886541	chr3L	7889046	7889059	Stalker4	6	2517	0.5	2.5	1.5	2.4	2530	chr3L	7886529	intron	CG32365 +	chr3L	7887794	intron	CG32365 +	chr3L	7889059	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-646
476	chr3L	7985367	7985397	chr3L	7987693	7987725	NOF	6	2328	2.5	1.5	2.0	2.0	2358	chr3L	7985367	intron	nmo +	chr3L	7986546	intron	nmo +	chr3L	7987725	intron	nmo +	chr3L_6_7985001	chr3L_7985001	RAL-646
485	chr3L	9076934	9076960	chr3L	9084491	9084519	412	4	7554	2.0	2.0	2.0	1.3	7585	chr3L	9076934	exon	Tequila +	chr3L	9080726	intron	Tequila +	chr3L	9084519	exon	Tequila +	chr3L_4_9080001	chr3L_9080001	RAL-646
486	chr3L	9219248	9219273	chr3L	9219915	9219926	jockey	6	664	6.5	3.0	4.8	1.0	678	chr3L	9219248	intergenic	not near genes	chr3L	9219587	intergenic	not near genes	chr3L	9219926	intergenic	not near genes	chr3L_6_9215001	chr3L_9215001	RAL-646
487	chr3L	9270641	9270651	chr3L	9278395	9278406	roo	4	7755	2.0	3.5	2.8	1.1	7765	chr3L	9270641	intron	GluRIB +	chr3L	9274524	intron	GluRIB +	chr3L	9278406	exon	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-646
488	chr3L	9443528	9443540	chr3L	9445315	9445327	S-element	5	1786	0.5	2.5	1.5	2.0	1799	chr3L	9443528	intron	CG33926 +	chr3L	9444428	intron	CG33926 +	chr3L	9445327	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-646
490	chr3L	9575914	9575946	chr3L	9580992	9581016	jockey	4	5076	2.5	3.5	3.0	1.0	5102	chr3L	9575914	intron	CG42673 +	chr3L	9578465	intron	CG42673 +	chr3L	9581016	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-646
499	chr3L	11087080	11087086	chr3L	11088869	11088875	S-element	4	1788	3.0	7.0	5.0	0.7	1795	chr3L	11087080	intron	JIL-1 -	chr3L	11087978	intron	JIL-1 -	chr3L	11088875	intron	JIL-1 -	chr3L_4_11085001	chr3L_11085001	RAL-646
500	chr3L	11105298	11105324	chr3L	11107009	11107035	X-element	7	1709	1.5	1.5	1.5	2.8	1737	chr3L	11105298	intergenic	not near genes	chr3L	11106166	intergenic	not near genes	chr3L	11107035	exon	CG32073 -	chr3L_7_11105001	chr3L_11105001	RAL-646
501	chr3L	11264466	11264491	chr3L	11271418	11271443	17.6	6	6948	3.0	1.0	2.0	2.0	6977	chr3L	11264466	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271443	intergenic	not near genes	chr3L_6_11265001	chr3L_11265001	RAL-646
503	chr3L	11564788	11564812	chr3L	11572404	11572435	412	7	7619	0.5	4.0	2.2	2.2	7647	chr3L	11564788	exon	CG33267 +	chr3L	11568612	intron	CG33267 +	chr3L	11572435	exon	CG33267 +	chr3L_7_11565001	chr3L_11565001	RAL-646
507	chr3L	11723088	11723113	chr3L	11727883	11727902	Doc	4	4792	0.5	0.0	0.2	3.3	4814	chr3L	11723088	3` UTR	Bmcp +	chr3L	11725495	intron	Bmcp +	chr3L	11727902	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-646
510	chr3L	11864563	11864581	chr3L	11865858	11865876	pogo	4	1295	2.5	2.0	2.2	1.2	1313	chr3L	11864563	intron	CG44837 -	chr3L	11865220	intron	CG44837 -	chr3L	11865876	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-646
523	chr3L	12957787	12957816	chr3L	12962269	12962298	copia	6	4481	2.0	2.0	2.0	2.0	4511	chr3L	12957787	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_6_12960001	chr3L_12960001	RAL-646
529	chr3L	13525155	13525187	chr3L	13532951	13532983	roo	8	7792	2.5	2.5	2.5	2.3	7828	chr3L	13525155	intergenic	not near genes	chr3L	13529069	intergenic	not near genes	chr3L	13532983	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	RAL-646
532	chr3L	14245566	14245592	chr3L	14245660	14245683	1360	8	92	3.5	2.0	2.8	2.1	117	chr3L	14245566	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245683	3` UTR	CR44561 -	chr3L_8_14245001	chr3L_14245001	RAL-646
533	chr3L	14295988	14296008	chr3L	14296473	14296484	roo	5	483	4.5	1.5	3.0	1.2	496	chr3L	14295988	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296484	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-646
541	chr3L	15554927	15554951	chr3L	15556713	15556738	S-element	5	1786	0.0	0.5	0.2	4.2	1811	chr3L	15554927	intron	AGO2 +	chr3L	15555832	intron	AGO2 +	chr3L	15556738	intron	AGO2 +	chr3L_5_15555001	chr3L_15555001	RAL-646
546	chr3L	15899243	15899255	chr3L	15899794	15899810	jockey	4	560	3.0	3.0	3.0	1.0	567	chr3L	15899243	intergenic	pHCl -	chr3L	15899526	intergenic	pHCl -	chr3L	15899810	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-646
549	chr3L	16443853	16443869	chr3L	16446192	16446209	Doc	4	2340	1.0	1.5	1.2	1.8	2356	chr3L	16443853	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445031	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446209	intron,intron	CG33158 +,dsx-c73A -	chr3L_4_16445001	chr3L_16445001	RAL-646
550	chr3L	16493977	16494007	chr3L	16494494	16494522	jockey	12	516	4.0	4.0	4.0	2.4	545	chr3L	16493977	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494522	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_12_16490001	chr3L_16490001	RAL-646
558	chr3L	16945729	16945742	chr3L	16954880	16954893	roo	13	9151	8.5	1.5	5.0	2.2	9164	chr3L	16945729	exon	Obp73a +	chr3L	16950311	intergenic	not near genes	chr3L	16954893	5` UTR	Nc73EF +	chr3L_13_16950001	chr3L_16950001	RAL-646
559	chr3L	16945743	16945752	chr3L	16954879	16954905	roo	4	9144	6.0	1.5	3.8	0.8	9162	chr3L	16945743	exon	Obp73a +	chr3L	16950324	intergenic	not near genes	chr3L	16954905	5` UTR	Nc73EF +	chr3L_4_16950001	chr3L_16950001	RAL-646
561	chr3L	17085006	17085030	chr3L	17094155	17094179	roo	4	9149	1.0	1.0	1.0	2.0	9173	chr3L	17085006	intron	Rbp6 -	chr3L	17089592	intron	Rbp6 -	chr3L	17094179	intron	Rbp6 -	chr3L_4_17085001	chr3L_17085001	RAL-646
571	chr3L	17516980	17517009	chr3L	17524538	17524564	412	6	7557	2.0	4.0	3.0	1.5	7584	chr3L	17516980	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524564	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-646
581	chr3L	18772418	18772434	chr3L	18781099	18781114	roo	7	8679	2.5	4.0	3.2	1.7	8696	chr3L	18772418	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781114	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	RAL-646
585	chr3L	19117046	19117075	chr3L	19124489	19124522	mdg1	8	7445	4.0	1.5	2.8	2.1	7476	chr3L	19117046	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_8_19120001	chr3L_19120001	RAL-646
589	chr3L	19208070	19208091	chr3L	19209432	19209460	Doc	4	1369	3.0	2.5	2.8	1.1	1390	chr3L	19208070	intron	fz2 -	chr3L	19208765	intron	fz2 -	chr3L	19209460	intron	fz2 -	chr3L_4_19205001	chr3L_19205001	RAL-646
591	chr3L	19861844	19861850	chr3L	19863632	19863637	S-element	4	1788	0.0	1.0	0.5	2.7	1793	chr3L	19861844	5` UTR	CR45433 +	chr3L	19862740	intergenic	not near genes	chr3L	19863637	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-646
599	chr3L	21014938	21014945	chr3L	21023400	21023409	Tirant	4	8467	2.5	4.0	3.2	1.0	8471	chr3L	21014938	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023409	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-646
603	chr3L	21306149	21306164	chr3L	21315308	21315323	roo	4	9159	0.5	0.5	0.5	2.7	9174	chr3L	21306149	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310736	intron	Pc -	chr3L	21315323	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-646
605	chr3L	21498834	21498868	chr3L	21500470	21500504	1360	5	1632	2.0	2.5	2.2	1.6	1670	chr3L	21498834	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500504	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-646
606	chr3L	21749327	21749350	chr3L	21754476	21754510	Doc	7	5156	3.0	6.0	4.5	1.3	5183	chr3L	21749327	intron	Syn1 -	chr3L	21751918	intron	Syn1 -	chr3L	21754510	intron	Syn1 -	chr3L_7_21750001	chr3L_21750001	RAL-646
621	chr3L	22577620	22577636	chr3L	22582408	22582424	Doc	6	4787	4.5	5.5	5.0	1.0	4804	chr3L	22577620	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582424	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-646
623	chr3L	22617188	22617217	chr3L	22624640	22624669	blood	5	7450	3.0	0.5	1.8	1.8	7481	chr3L	22617188	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624669	intron	CG14459 -	chr3L_5_22620001	chr3L_22620001	RAL-646
627	chr3L	22989862	22989888	chr3L	22996836	22996862	297	5	6971	3.5	1.0	2.2	1.6	7000	chr3L	22989862	intergenic	not near genes	chr3L	22993362	intergenic	not near genes	chr3L	22996862	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	RAL-646
632	chr3L	24168787	24168822	chr3L	24176115	24176135	ZAM	7	7320	2.5	3.0	2.8	1.8	7348	chr3L	24168787	intron	Snap25 +	chr3L	24172461	intron	Snap25 +	chr3L	24176135	intron	Snap25 +	chr3L_7_24170001	chr3L_24170001	RAL-646
636	chr3L	24948769	24948772	chr3L	25934972	25934978	diver2	4	986204	9.0	9.0	9.0	0.4	986209	chr3L	24948769	intergenic	not near genes	chr3L	25441874	intergenic	not near genes	chr3L	25934978	intron	CG40178 -	chr3L_4_25440001	chr3L_25440001	RAL-646
640	chr3R	4408419	4408442	chr3R	4412717	4412734	Juan	4	4298	1.0	2.0	1.5	1.6	4315	chr3R	4408419	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412734	intron	CG32944 -	chr3R_4_4410001	chr3R_4410001	RAL-646
641	chr3R	4609555	4609582	chr3R	4610718	4610741	1360	9	1160	0.5	3.0	1.8	3.2	1186	chr3R	4609555	intergenic	not near genes	chr3R	4610148	intergenic	not near genes	chr3R	4610741	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-646
644	chr3R	4753241	4753266	chr3R	4757544	4757569	F-element	7	4302	5.0	5.5	5.2	1.1	4328	chr3R	4753241	intron,intron	atms +,CG44098 -	chr3R	4755405	intron,intron	atms +,CG44098 -	chr3R	4757569	intron,exon	atms +,CG44098 -	chr3R_7_4755001	chr3R_4755001	RAL-646
653	chr3R	5746014	5746044	chr3R	5746254	5746285	pogo	6	238	2.0	1.0	1.5	2.4	271	chr3R	5746014	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746285	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-646
657	chr3R	5927561	5927588	chr3R	5927799	5927808	pogo	7	237	1.0	3.0	2.0	2.3	247	chr3R	5927561	intron	CG34113 -	chr3R	5927684	intron	CG34113 -	chr3R	5927808	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-646
658	chr3R	6015967	6015990	chr3R	6024447	6024470	Tirant	5	8479	1.5	5.5	3.5	1.1	8503	chr3R	6015967	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024470	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-646
660	chr3R	6206288	6206318	chr3R	6206505	6206511	BS	9	213	5.0	2.0	3.5	2.0	223	chr3R	6206288	exon	Osi24 +	chr3R	6206400	intron	Osi24 +	chr3R	6206511	intron	Osi24 +	chr3R_9_6205001	chr3R_6205001	RAL-646
664	chr3R	6737504	6737526	chr3R	6739291	6739313	Doc	7	1785	2.0	2.5	2.2	2.2	1809	chr3R	6737504	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739313	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-646
679	chr3R	8101766	8101790	chr3R	8104850	8104874	G2	7	3083	1.5	1.5	1.5	2.8	3108	chr3R	8101766	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104874	3` UTR	CG7900 +	chr3R_7_8100001	chr3R_8100001	RAL-646
686	chr3R	8403007	8403034	chr3R	8412172	8412199	roo	10	9166	3.5	3.0	3.2	2.4	9192	chr3R	8403007	intron	CG45263 -	chr3R	8407603	intron	CG45263 -	chr3R	8412199	intron	CG45263 -	chr3R_10_8405001	chr3R_8405001	RAL-646
688	chr3R	8707364	8707388	chr3R	8709795	8709829	jockey	15	2439	1.0	3.0	2.0	5.0	2465	chr3R	8707364	intergenic	not near genes	chr3R	8708596	intergenic	not near genes	chr3R	8709829	intergenic	not near genes	chr3R_15_8705001	chr3R_8705001	RAL-646
701	chr3R	9278778	9278811	chr3R	9284038	9284069	Rt1a	6	5259	1.5	4.5	3.0	1.5	5291	chr3R	9278778	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284069	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-646
702	chr3R	9319580	9319609	chr3R	9320015	9320028	jockey	6	432	1.5	3.0	2.2	1.9	448	chr3R	9319580	intron	CG8861 -	chr3R	9319804	intron	CG8861 -	chr3R	9320028	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-646
730	chr3R	11379247	11379269	chr3R	11388402	11388424	roo	4	9155	0.5	5.0	2.8	1.1	9177	chr3R	11379247	intron	pros +	chr3R	11383836	intron	pros +	chr3R	11388424	intron	pros +	chr3R_4_11380001	chr3R_11380001	RAL-646
741	chr3R	12022885	12022899	chr3R	12025062	12025076	pogo	4	2177	1.0	2.0	1.5	1.6	2191	chr3R	12022885	intergenic	not near genes	chr3R	12023980	intergenic	not near genes	chr3R	12025076	intergenic	not near genes	chr3R_4_12020001	chr3R_12020001	RAL-646
760	chr3R	12920166	12920185	chr3R	12925359	12925388	copia	4	5198	1.5	1.5	1.5	1.6	5222	chr3R	12920166	intron	beat-Vb +	chr3R	12922777	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_4_12920001	chr3R_12920001	RAL-646
768	chr3R	13135832	13135848	chr3R	13138007	13138022	pogo	4	2175	1.0	0.5	0.8	2.2	2190	chr3R	13135832	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136927	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138022	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13135001	chr3R_13135001	RAL-646
769	chr3R	13143057	13143062	chr3R	13148615	13148633	mdg3	4	5569	2.0	4.5	3.2	1.0	5576	chr3R	13143057	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145845	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148633	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13145001	chr3R_13145001	RAL-646
788	chr3R	15041423	15041456	chr3R	15045191	15045224	Doc	5	3768	0.5	2.0	1.2	2.3	3801	chr3R	15041423	intergenic	not near genes	chr3R	15043324	intergenic	not near genes	chr3R	15045224	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	RAL-646
795	chr3R	15132062	15132086	chr3R	15135120	15135146	Juan	6	3059	2.5	1.5	2.0	2.0	3084	chr3R	15132062	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135146	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-646
800	chr3R	15601165	15601188	chr3R	15608687	15608698	412	6	7520	6.0	1.0	3.5	1.3	7533	chr3R	15601165	intergenic	not near genes	chr3R	15604932	intergenic	not near genes	chr3R	15608698	intergenic	not near genes	chr3R_6_15600001	chr3R_15600001	RAL-646
811	chr3R	16756321	16756352	chr3R	16762511	16762543	diver	9	6189	0.5	1.0	0.8	5.0	6222	chr3R	16756321	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762543	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-646
819	chr3R	17346691	17346706	chr3R	17348254	17348269	F-element	4	1563	0.5	2.5	1.5	1.6	1578	chr3R	17346691	intron	beat-IIa -	chr3R	17347480	intron	beat-IIa -	chr3R	17348269	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-646
820	chr3R	17591314	17591320	chr3R	17591718	17591728	F-element	4	408	2.0	0.5	1.2	1.8	414	chr3R	17591314	intergenic	not near genes	chr3R	17591521	intergenic	not near genes	chr3R	17591728	intergenic	not near genes	chr3R_4_17590001	chr3R_17590001	RAL-646
827	chr3R	17925859	17925887	chr3R	17927326	17927354	hobo	8	1466	4.0	5.0	4.5	1.5	1495	chr3R	17925859	intron	cpo +	chr3R	17926606	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_8_17925001	chr3R_17925001	RAL-646
851	chr3R	20109537	20109571	chr3R	20114743	20114777	copia	8	5206	1.0	0.5	0.8	4.4	5240	chr3R	20109537	intergenic	not near genes	chr3R	20112157	intergenic	not near genes	chr3R	20114777	intergenic	CG10887 +	chr3R_8_20110001	chr3R_20110001	RAL-646
859	chr3R	21141673	21141705	chr3R	21150154	21150170	Tirant	4	8468	2.5	3.0	2.8	1.1	8497	chr3R	21141673	intron	SNF4Agamma +	chr3R	21145922	intron	SNF4Agamma +	chr3R	21150170	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-646
865	chr3R	21609028	21609036	chr3R	21611637	21611670	NOF	6	2624	2.5	3.5	3.0	1.5	2642	chr3R	21609028	intron	InR -	chr3R	21610349	intron	InR -	chr3R	21611670	intron	InR -	chr3R_6_21610001	chr3R_21610001	RAL-646
867	chr3R	21761132	21761148	chr3R	21768510	21768540	mdg1	4	7383	2.5	5.0	3.8	0.8	7408	chr3R	21761132	exon	CG42335 +	chr3R	21764836	intron	CG42335 +	chr3R	21768540	exon	CG42335 +	chr3R_4_21760001	chr3R_21760001	RAL-646
878	chr3R	22234683	22234693	chr3R	22236002	22236012	pogo	4	1319	0.5	0.0	0.2	3.3	1329	chr3R	22234683	intron	SKIP +	chr3R	22235348	intron	SKIP +	chr3R	22236012	intron	SKIP +	chr3R_4_22235001	chr3R_22235001	RAL-646
880	chr3R	22450553	22450579	chr3R	22453193	22453218	NOF	9	2639	2.0	6.0	4.0	1.8	2665	chr3R	22450553	intron	CG34376 +	chr3R	22451886	intron	CG34376 +	chr3R	22453218	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-646
891	chr3R	23684714	23684729	chr3R	23685181	23685190	roo	6	473	2.5	7.0	4.8	1.0	476	chr3R	23684714	intron	CG18754 +	chr3R	23684952	intron	CG18754 +	chr3R	23685190	exon	CG18754 +	chr3R_6_23680001	chr3R_23680001	RAL-646
896	chr3R	24072086	24072116	chr3R	24072524	24072554	jockey	12	433	5.5	6.5	6.0	1.7	468	chr3R	24072086	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072554	intron	4EHP -	chr3R_12_24070001	chr3R_24070001	RAL-646
897	chr3R	24207212	24207247	chr3R	24212288	24212319	flea	5	5075	2.5	1.0	1.8	1.8	5107	chr3R	24207212	intron	twin -	chr3R	24209766	intron	twin -	chr3R	24212319	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-646
898	chr3R	24493286	24493306	chr3R	24493514	24493535	BS	4	229	0.0	3.5	1.8	1.4	249	chr3R	24493286	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493535	intergenic	not near genes	chr3R_4_24490001	chr3R_24490001	RAL-646
902	chr3R	24730106	24730115	chr3R	24732484	24732491	Doc	4	2378	3.5	0.5	2.0	1.3	2385	chr3R	24730106	intron	tok +	chr3R	24731298	intron	tok +	chr3R	24732491	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-646
910	chr3R	25832701	25832721	chr3R	25841875	25841902	roo	7	9180	3.0	2.5	2.8	1.8	9201	chr3R	25832701	exon	alpha4GT2 +	chr3R	25837302	intron	alpha4GT2 +	chr3R	25841902	exon	alpha4GT2 +	chr3R_7_25835001	chr3R_25835001	RAL-646
917	chr3R	26376326	26376358	chr3R	26385486	26385500	roo	5	9151	2.0	0.5	1.2	2.3	9174	chr3R	26376326	intergenic	not near genes	chr3R	26380913	intergenic	not near genes	chr3R	26385500	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-646
920	chr3R	26558332	26558355	chr3R	26565639	26565666	Stalker4	8	7304	2.5	5.0	3.8	1.7	7334	chr3R	26558332	intron	scrib +	chr3R	26561999	intron	scrib +	chr3R	26565666	intron	scrib +	chr3R_8_26560001	chr3R_26560001	RAL-646
922	chr3R	26642736	26642755	chr3R	26643129	26643148	jockey	5	392	5.0	1.5	3.2	1.2	412	chr3R	26642736	intergenic	not near genes	chr3R	26642942	intergenic	not near genes	chr3R	26643148	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-646
925	chr3R	27342813	27342825	chr3R	27351394	27351406	Tirant	4	8581	1.5	2.5	2.0	1.3	8593	chr3R	27342813	intron	CG42534 +	chr3R	27347110	intron	CG42534 +	chr3R	27351406	intron	CG42534 +	chr3R_4_27345001	chr3R_27345001	RAL-646
929	chr3R	28173672	28173684	chr3R	28181101	28181112	mdg1	4	7429	2.5	0.5	1.5	1.6	7440	chr3R	28173672	intron	CG34354 +	chr3R	28177392	intron	CG34354 +	chr3R	28181112	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	RAL-646
930	chr3R	28253347	28253364	chr3R	28255847	28255872	jockey	4	2507	5.5	1.5	3.5	0.9	2525	chr3R	28253347	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255872	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-646
938	chr3R	28792886	28792902	chr3R	28797963	28797979	jockey	7	5087	4.0	2.5	3.2	1.7	5093	chr3R	28792886	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28797979	intergenic	not near genes	chr3R_7_28795001	chr3R_28795001	RAL-646
946	chr3R	29406616	29406637	chr3R	29407902	29407922	jockey	4	1285	4.0	2.5	3.2	1.0	1306	chr3R	29406616	intron	Ptp99A +	chr3R	29407269	intron	Ptp99A +	chr3R	29407922	intron	Ptp99A +	chr3R_4_29405001	chr3R_29405001	RAL-646
947	chr3R	29406638	29406649	chr3R	29407900	29407935	jockey	6	1280	2.5	2.5	2.5	1.7	1297	chr3R	29406638	intron	Ptp99A +	chr3R	29407286	intron	Ptp99A +	chr3R	29407935	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-646
952	chr3R	29738263	29738299	chr3R	29739729	29739758	hobo	8	1464	2.0	1.5	1.8	2.9	1495	chr3R	29738263	intergenic	CG1969 +,CG7598 +	chr3R	29739010	intron	CG1969 +	chr3R	29739758	5` UTR	CG1969 +	chr3R_8_29735001	chr3R_29735001	RAL-646
954	chr3R	29882020	29882050	chr3R	29891174	29891207	roo	7	9157	2.0	1.5	1.8	2.5	9187	chr3R	29882020	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891207	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-646
957	chr3R	30084847	30084879	chr3R	30086314	30086345	hobo	13	1466	1.5	2.0	1.8	4.6	1498	chr3R	30084847	intron	sima +	chr3R	30085596	intron	sima +	chr3R	30086345	intron	sima +	chr3R_13_30085001	chr3R_30085001	RAL-646
961	chr3R	30317328	30317359	chr3R	30324919	30324945	roo	5	7591	1.0	1.0	1.0	2.5	7617	chr3R	30317328	intron	hdc +	chr3R	30321136	intron	hdc +	chr3R	30324945	intron	hdc +	chr3R_5_30320001	chr3R_30320001	RAL-646
964	chr3R	30396220	30396244	chr3R	30404486	30404510	roo	7	8265	2.5	1.5	2.0	2.3	8290	chr3R	30396220	intergenic	not near genes	chr3R	30400365	intergenic	not near genes	chr3R	30404510	5` UTR	CR45570 +	chr3R_7_30400001	chr3R_30400001	RAL-646
967	chr3R	30480475	30480511	chr3R	30482940	30482979	jockey	6	2467	3.0	5.0	4.0	1.2	2504	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481727	intron	PH4alphaEFB +	chr3R	30482979	intron	PH4alphaEFB +	chr3R_6_30480001	chr3R_30480001	RAL-646
970	chr3R	30679522	30679551	chr3R	30686991	30687013	blood	5	7468	1.5	5.0	3.2	1.2	7491	chr3R	30679522	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687013	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-646
979	chr3R	31074233	31074261	chr3R	31081831	31081859	springer	7	7597	2.0	3.5	2.8	1.8	7626	chr3R	31074233	intron	Sox100B +	chr3R	31078046	intron	Sox100B +	chr3R	31081859	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	RAL-646
984	chr3R	31413090	31413117	chr3R	31418290	31418310	copia	15	5198	2.5	3.0	2.8	3.9	5220	chr3R	31413090	intron	Gprk2 +	chr3R	31415700	intron	Gprk2 +	chr3R	31418310	intron	Gprk2 +	chr3R_15_31415001	chr3R_31415001	RAL-646
988	chr3R	31691530	31691564	chr3R	31696296	31696315	Doc	7	4761	2.0	2.5	2.2	2.2	4785	chr3R	31691530	intergenic	not near genes	chr3R	31693922	intergenic	not near genes	chr3R	31696315	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-646
995	chr3R	31997995	31998024	chr3R	32005464	32005492	blood	6	7466	1.0	1.5	1.2	2.7	7497	chr3R	31997995	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005492	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-646
996	chr4	671604	671635	chr4	680187	680218	Tirant	7	8582	1.0	2.5	1.8	2.5	8614	chr4	671604	intron	CG11360 +	chr4	675911	intron	CG11360 +	chr4	680218	intron	CG11360 +	chr4_7_675001	chr4_675001	RAL-646
997	chrX	551422	551453	chrX	558983	559015	412	6	7557	4.0	2.0	3.0	1.5	7593	chrX	551422	intron	Appl +	chrX	555218	intron	Appl +	chrX	559015	intron	Appl +	chrX_6_555001	chrX_555001	RAL-646
1006	chrX	827600	827618	chrX	835392	835392	roo	5	7787	3.0	0.0	1.5	2.0	7792	chrX	827600	intron	CG43867 -	chrX	831496	intron	CG43867 -	chrX	835392	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-646
1007	chrX	906705	906733	chrX	908494	908522	S-element	8	1787	2.0	2.5	2.2	2.5	1817	chrX	906705	intron	CG43867 -	chrX	907614	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-646
1016	chrX	1627975	1628000	chrX	1635443	1635468	gtwin	5	7464	5.0	6.0	5.5	0.8	7493	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631722	intron,intron	Mur2B -,br +	chrX	1635468	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-646
1020	chrX	2399836	2399870	chrX	2408189	2408204	roo	5	8348	1.0	1.0	1.0	2.5	8368	chrX	2399836	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_5_2400001	chrX_2400001	RAL-646
1026	chrX	3493098	3493110	chrX	3502257	3502269	roo	4	9159	3.0	1.5	2.2	1.2	9171	chrX	3493098	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502269	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-646
1027	chrX	3597550	3597576	chrX	3619718	3619744	roo	6	22168	4.0	0.5	2.2	1.9	22194	chrX	3597550	intron	AstA-R1 +	chrX	3608647	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_6_3605001	chrX_3605001	RAL-646
1030	chrX	3986863	3986895	chrX	3994496	3994528	412	6	7633	2.0	1.0	1.5	2.4	7665	chrX	3986863	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994528	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RAL-646
1032	chrX	4157898	4157913	chrX	4164950	4164966	297	7	7053	2.0	0.5	1.2	3.2	7068	chrX	4157898	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4164966	intron	Fas2 -	chrX_7_4160001	chrX_4160001	RAL-646
1036	chrX	4763247	4763285	chrX	4763735	4763773	Stalker4	8	487	1.0	0.0	0.5	5.3	526	chrX	4763247	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_8_4760001	chrX_4760001	RAL-646
1037	chrX	4792385	4792408	chrX	4792818	4792841	jockey	5	432	0.0	3.0	1.5	2.0	456	chrX	4792385	intergenic	not near genes	chrX	4792613	intergenic	not near genes	chrX	4792841	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-646
1038	chrX	5096281	5096304	chrX	5103846	5103868	springer	6	7564	3.5	2.0	2.8	1.6	7587	chrX	5096281	intron,intron	CG15465 +,rg +	chrX	5100074	intron,intron	CG15465 +,rg +	chrX	5103868	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-646
1040	chrX	5524850	5524868	chrX	5528713	5528730	412	4	3862	2.5	0.5	1.5	1.6	3880	chrX	5524850	intergenic	snoRNA:Psi28S-3342 -	chrX	5526790	intergenic	not near genes	chrX	5528730	intergenic	Vsx2 -	chrX_4_5525001	chrX_5525001	RAL-646
1041	chrX	5883814	5883841	chrX	5884052	5884079	pogo	4	240	0.0	0.5	0.2	3.3	265	chrX	5883814	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884079	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-646
1044	chrX	6335226	6335243	chrX	6337733	6337753	Tirant	4	2509	0.0	3.5	1.8	1.4	2527	chrX	6335226	intergenic	not near genes	chrX	6336490	intergenic	not near genes	chrX	6337753	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-646
1045	chrX	6392869	6392899	chrX	6397633	6397663	Doc	9	4763	1.0	2.0	1.5	3.6	4794	chrX	6392869	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397663	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-646
1046	chrX	6562825	6562851	chrX	6571299	6571304	Tirant	7	8473	1.5	2.0	1.8	2.5	8479	chrX	6562825	intron	CG34417 +	chrX	6567064	intron	CG34417 +	chrX	6571304	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-646
1048	chrX	7023609	7023632	chrX	7030999	7031016	Tabor	7	7383	2.5	2.0	2.2	2.2	7407	chrX	7023609	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031016	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-646
1051	chrX	7702907	7702932	chrX	7703344	7703369	jockey	4	438	1.5	2.5	2.0	1.3	462	chrX	7702907	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703369	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-646
1052	chrX	8031435	8031458	chrX	8035744	8035767	Juan	5	4309	1.5	0.5	1.0	2.5	4332	chrX	8031435	intergenic	not near genes	chrX	8033601	intergenic	not near genes	chrX	8035767	3` UTR	CG2233 -	chrX_5_8030001	chrX_8030001	RAL-646
1053	chrX	8364848	8364871	chrX	8365244	8365267	BS	5	394	0.5	0.0	0.2	4.2	419	chrX	8364848	intron	nAChRalpha3 -	chrX	8365058	intron	nAChRalpha3 -	chrX	8365267	intron	nAChRalpha3 -	chrX_5_8365001	chrX_8365001	RAL-646
1057	chrX	8922333	8922361	chrX	8922767	8922795	jockey	10	434	1.0	2.0	1.5	4.0	462	chrX	8922333	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922795	intron	rdgA +	chrX_10_8920001	chrX_8920001	RAL-646
1061	chrX	9508136	9508145	chrX	9509654	9509663	jockey	4	1518	0.0	2.0	1.0	2.0	1527	chrX	9508136	intron	CG32700 -	chrX	9508900	intron	CG32700 -	chrX	9509663	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-646
1062	chrX	9575802	9575823	chrX	9576114	9576147	mdg3	6	319	2.5	3.0	2.8	1.6	345	chrX	9575802	intron,exon	CG32699 -,CG42395 -	chrX	9575974	intron,intron	CG32699 -,CG42395 -	chrX	9576147	intron,5` UTR	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	RAL-646
1067	chrX	11194453	11194461	chrX	11201865	11201880	gypsy5	5	7417	5.0	4.0	4.5	0.9	7427	chrX	11194453	intergenic	not near genes	chrX	11198166	intergenic	not near genes	chrX	11201880	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	RAL-646
1083	chrX	14105021	14105049	chrX	14114172	14114200	roo	9	9148	4.0	3.5	3.8	1.9	9179	chrX	14105021	intergenic	not near genes	chrX	14109610	intergenic	not near genes	chrX	14114200	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-646
1086	chrX	14589687	14589706	chrX	14589921	14589947	pogo	5	240	1.0	0.5	0.8	2.8	260	chrX	14589687	intron	CG9413 -	chrX	14589817	intron	CG9413 -	chrX	14589947	intron	CG9413 -	chrX_5_14585001	chrX_14585001	RAL-646
1087	chrX	14636465	14636483	chrX	14641905	14641924	I-element	4	5441	1.5	1.5	1.5	1.6	5459	chrX	14636465	intron	NetA -	chrX	14639194	intron	NetA -	chrX	14641924	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-646
1088	chrX	14636487	14636491	chrX	14641899	14641921	I-element	4	5430	1.5	0.5	1.0	2.0	5434	chrX	14636487	intron	NetA -	chrX	14639204	intron	NetA -	chrX	14641921	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-646
1089	chrX	14778030	14778057	chrX	14782827	14782854	Doc	4	4797	0.5	0.0	0.2	3.3	4824	chrX	14778030	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782854	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-646
1091	chrX	15413048	15413083	chrX	15417350	15417382	Juan	7	4297	3.0	1.5	2.2	2.2	4334	chrX	15413048	intron	Cngl -	chrX	15415215	intron	Cngl -	chrX	15417382	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-646
1092	chrX	15421925	15421950	chrX	15423436	15423461	pogo	4	1509	2.0	0.5	1.2	1.8	1536	chrX	15421925	intron	Cngl -	chrX	15422693	intron	Cngl -	chrX	15423461	intron	Cngl -	chrX_4_15420001	chrX_15420001	RAL-646
1093	chrX	15435687	15435700	chrX	15436120	15436133	rover	4	433	0.0	3.0	1.5	1.6	446	chrX	15435687	intron	Cngl -	chrX	15435910	intron	Cngl -	chrX	15436133	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-646
1096	chrX	16492666	16492671	chrX	16498243	16498248	mdg3	4	5577	2.5	3.0	2.8	1.1	5582	chrX	16492666	intron	para -	chrX	16495457	intron	para -	chrX	16498248	intron	para -	chrX_4_16495001	chrX_16495001	RAL-646
1100	chrX	17792951	17792978	chrX	17796249	17796274	flea	4	3296	1.5	1.0	1.2	1.8	3323	chrX	17792951	intron	OdsH +	chrX	17794612	intron	OdsH +	chrX	17796274	intron	OdsH +	chrX_4_17790001	chrX_17790001	RAL-646
1107	chrX	19136556	19136585	chrX	19143476	19143504	412	6	6919	1.0	7.0	4.0	1.2	6948	chrX	19136556	intergenic	not near genes	chrX	19140030	intergenic	not near genes	chrX	19143504	3` UTR	RhoGAP18B -	chrX_6_19140001	chrX_19140001	RAL-646
1108	chrX	19380173	19380181	chrX	19380413	19380422	pogo	4	240	1.5	0.5	1.0	2.0	249	chrX	19380173	intron	kek5 +	chrX	19380298	intron	kek5 +	chrX	19380422	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-646
1109	chrX	19472131	19472156	chrX	19472690	19472715	jockey	6	563	2.0	3.5	2.8	1.6	584	chrX	19472131	intergenic	kek5 +	chrX	19472423	intergenic	not near genes	chrX	19472715	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-646
1113	chrX	19710071	19710098	chrX	19711857	19711867	S-element	6	1781	3.0	2.5	2.8	1.6	1796	chrX	19710071	intron	meso18E -	chrX	19710969	intron	meso18E -	chrX	19711867	intron	meso18E -	chrX_6_19710001	chrX_19710001	RAL-646
1117	chrX	20377326	20377349	chrX	20378792	20378816	hobo	6	1467	4.5	4.0	4.2	1.2	1490	chrX	20377326	intergenic	not near genes	chrX	20378071	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-646
1118	chrX	20504129	20504154	chrX	20505650	20505675	transib2	6	1520	2.0	2.0	2.0	2.0	1546	chrX	20504129	intron	RhoGAP19D -	chrX	20504902	intron	RhoGAP19D -	chrX	20505675	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RAL-646
1124	chrX	20940727	20940752	chrX	20942195	20942206	hobo	5	1464	1.5	2.5	2.0	1.7	1479	chrX	20940727	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942206	intergenic	not near genes	chrX_5_20940001	chrX_20940001	RAL-646
1127	chrX	21086130	21086165	chrX	21087159	21087173	jockey	6	1018	1.5	1.0	1.2	2.7	1043	chrX	21086130	intergenic	not near genes	chrX	21086652	intergenic	not near genes	chrX	21087173	intergenic	not near genes	chrX_6_21085001	chrX_21085001	RAL-646
1132	chrX	22697500	22697523	chrX	22701797	22701820	Juan	4	4297	1.5	3.0	2.2	1.2	4320	chrX	22697500	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-646
1133	chrX	22771517	22771539	chrX	22774808	22774808	297	4	3283	2.0	1.0	1.5	1.6	3291	chrX	22771517	intron	CR44997 +	chrX	22773162	intron	CR44997 +	chrX	22774808	intron	CR44997 +	chrX_4_22770001	chrX_22770001	RAL-646
1135	chrX	22987110	22987133	chrX	22989768	22989787	Burdock	4	2657	0.0	0.5	0.2	3.3	2677	chrX	22987110	intron,intron	stnA -,stnB -	chrX	22988448	intron,intron	stnA -,stnB -	chrX	22989787	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	RAL-646