SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 347886 347918 chr2L 355386 355418 blood 5 7500 2.5 1.0 1.8 1.8 7532 chr2L 347886 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355418 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-646 2 chr2L 431226 431240 chr2L 431306 431320 5 78 2.0 6.0 4.0 1.0 94 chr2L 431226 5` UTR ex + chr2L 431273 5` UTR ex + chr2L 431320 5` UTR ex + chr2L_5_430001 chr2L_430001 RAL-646 3 chr2L 686921 686950 chr2L 695957 695990 roo 5 9035 1.0 1.5 1.2 2.3 9069 chr2L 686921 intron ds - chr2L 691456 intron ds - chr2L 695990 intron ds - chr2L_5_690001 chr2L_690001 RAL-646 4 chr2L 726281 726288 chr2L 726404 726411 4 123 2.0 7.0 4.5 0.7 130 chr2L 726281 intergenic not near genes chr2L 726346 intergenic not near genes chr2L 726411 intergenic not near genes chr2L_4_725001 chr2L_725001 RAL-646 5 chr2L 726289 726300 chr2L 726400 726425 5 121 1.0 6.5 3.8 1.0 136 chr2L 726289 intergenic not near genes chr2L 726357 intergenic not near genes chr2L 726425 intergenic not near genes chr2L_5_725001 chr2L_725001 RAL-646 6 chr2L 770470 770493 chr2L 772244 772269 Bari1 5 1772 1.5 2.5 2.0 1.7 1799 chr2L 770470 intergenic not near genes chr2L 771370 intergenic not near genes chr2L 772269 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-646 7 chr2L 804488 804503 chr2L 804572 804587 7 83 2.0 5.0 3.5 1.6 99 chr2L 804488 intergenic not near genes chr2L 804538 intergenic not near genes chr2L 804587 intergenic not near genes chr2L_7_800001 chr2L_800001 RAL-646 8 chr2L 877844 877861 chr2L 877925 877942 8 80 2.5 2.0 2.2 2.5 98 chr2L 877844 3` UTR,exon CG15824 -,ninaA + chr2L 877893 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-646 9 chr2L 923522 923545 chr2L 923706 923729 4 185 5.5 4.0 4.8 0.7 207 chr2L 923522 intron CG4341 + chr2L 923626 intron CG4341 + chr2L 923729 intron CG4341 + chr2L_4_920001 chr2L_920001 RAL-646 10 chr2L 927862 927876 chr2L 928006 928028 4 150 2.0 2.0 2.0 1.3 166 chr2L 927862 intron CG4341 + chr2L 927945 intron CG4341 + chr2L 928028 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-646 11 chr2L 976886 976909 chr2L 984522 984542 roo 7 7635 2.5 0.0 1.2 3.2 7656 chr2L 976886 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984542 intergenic not near genes chr2L_7_980001 chr2L_980001 RAL-646 12 chr2L 1028861 1028870 chr2L 1028943 1028970 4 95 0.5 4.5 2.5 1.1 109 chr2L 1028861 intron IA-2 - chr2L 1028916 intron IA-2 - chr2L 1028970 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-646 13 chr2L 1035564 1035590 chr2L 1035641 1035667 8 76 2.5 5.0 3.8 1.7 103 chr2L 1035564 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-646 14 chr2L 1205368 1205390 chr2L 1205453 1205478 5 87 3.0 1.5 2.2 1.6 110 chr2L 1205368 intergenic CG14342 + chr2L 1205423 intergenic CG14342 + chr2L 1205478 intergenic CG14342 + chr2L_5_1205001 chr2L_1205001 RAL-646 15 chr2L 1220135 1220140 chr2L 1227601 1227606 blood 4 7466 5.5 1.5 3.5 0.9 7471 chr2L 1220135 intron CG42329 + chr2L 1223870 intron CG42329 + chr2L 1227606 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-646 16 chr2L 1220141 1220161 chr2L 1227594 1227627 blood 5 7463 2.0 1.0 1.5 2.0 7486 chr2L 1220141 intron CG42329 + chr2L 1223884 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-646 17 chr2L 1327176 1327210 chr2L 1327576 1327578 7 394 0.0 0.5 0.2 5.8 402 chr2L 1327176 intergenic not near genes chr2L 1327377 intergenic not near genes chr2L 1327578 intergenic not near genes chr2L_7_1325001 chr2L_1325001 RAL-646 18 chr2L 1568822 1568854 chr2L 1568921 1568953 7 96 1.5 2.0 1.8 2.5 131 chr2L 1568822 intron haf + chr2L 1568888 intron haf + chr2L 1568953 intron haf + chr2L_7_1565001 chr2L_1565001 RAL-646 19 chr2L 1635396 1635420 chr2L 1635531 1635555 6 136 0.0 3.0 1.5 2.4 159 chr2L 1635396 intergenic not near genes chr2L 1635476 intergenic not near genes chr2L 1635555 intergenic not near genes chr2L_6_1635001 chr2L_1635001 RAL-646 20 chr2L 1711358 1711384 chr2L 1711682 1711707 mdg3 9 321 2.0 3.5 2.8 2.4 349 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-646 21 chr2L 1828410 1828435 chr2L 1828491 1828519 10 83 2.5 2.0 2.2 3.1 109 chr2L 1828410 intergenic not near genes chr2L 1828464 intergenic not near genes chr2L 1828519 intergenic not near genes chr2L_10_1825001 chr2L_1825001 RAL-646 22 chr2L 1993202 1993215 chr2L 1993288 1993300 5 86 1.5 2.5 2.0 1.7 98 chr2L 1993202 intergenic not near genes chr2L 1993251 intergenic not near genes chr2L 1993300 intergenic not near genes chr2L_5_1990001 chr2L_1990001 RAL-646 23 chr2L 2003686 2003695 chr2L 2003747 2003771 4 72 4.0 0.5 2.2 1.2 85 chr2L 2003686 intron,5` UTR CG33543 -,CR43464 + chr2L 2003728 intron,5` UTR CG33543 -,CR43464 + chr2L 2003771 intron,5` UTR CG33543 -,CR43464 + chr2L_4_2000001 chr2L_2000001 RAL-646 24 chr2L 2059055 2059085 chr2L 2059132 2059162 4 76 2.0 2.0 2.0 1.3 107 chr2L 2059055 3` UTR dpr3 - chr2L 2059108 3` UTR dpr3 - chr2L 2059162 3` UTR dpr3 - chr2L_4_2055001 chr2L_2055001 RAL-646 25 chr2L 2068616 2068648 chr2L 2068791 2068823 5 171 2.5 4.0 3.2 1.2 207 chr2L 2068616 intron dpr3 - chr2L 2068720 intron dpr3 - chr2L 2068823 intron dpr3 - chr2L_5_2065001 chr2L_2065001 RAL-646 26 chr2L 2100375 2100408 chr2L 2109526 2109546 roo 7 9149 2.5 2.0 2.2 2.2 9171 chr2L 2100375 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-646 27 chr2L 2713519 2713551 chr2L 2713614 2713615 11 91 1.5 1.0 1.2 5.0 96 chr2L 2713519 intron CG31690 + chr2L 2713567 intron CG31690 + chr2L 2713615 intron CG31690 + chr2L_11_2710001 chr2L_2710001 RAL-646 28 chr2L 2932446 2932471 chr2L 2932903 2932927 5 457 3.5 2.0 2.8 1.3 481 chr2L 2932446 intron lilli + chr2L 2932686 intron lilli + chr2L 2932927 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-646 29 chr2L 3008916 3008933 chr2L 3009025 3009042 4 108 1.0 5.5 3.2 1.0 126 chr2L 3008916 intron CG17265 + chr2L 3008979 intron CG17265 + chr2L 3009042 intron CG17265 + chr2L_4_3005001 chr2L_3005001 RAL-646 30 chr2L 3073033 3073060 chr2L 3078236 3078263 copia 6 5203 0.0 1.5 0.8 3.3 5230 chr2L 3073033 intron toc - chr2L 3075648 intron toc - chr2L 3078263 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-646 31 chr2L 3108888 3108896 chr2L 3108948 3108973 5 74 3.0 3.0 3.0 1.2 85 chr2L 3108888 intron toc - chr2L 3108930 intron toc - chr2L 3108973 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-646 32 chr2L 3113415 3113444 chr2L 3113510 3113539 4 95 0.0 1.0 0.5 2.7 124 chr2L 3113415 intron toc - chr2L 3113477 intron toc - chr2L 3113539 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-646 33 chr2L 3191528 3191546 chr2L 3191609 3191627 5 81 1.0 2.0 1.5 2.0 99 chr2L 3191528 intron CG34393 - chr2L 3191578 intron CG34393 - chr2L 3191627 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-646 34 chr2L 3192223 3192234 chr2L 3192334 3192345 5 111 1.5 5.0 3.2 1.2 122 chr2L 3192223 intron CG34393 - chr2L 3192284 intron CG34393 - chr2L 3192345 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-646 35 chr2L 3251496 3251525 chr2L 3259060 3259090 springer 4 7565 1.5 0.5 1.0 2.0 7594 chr2L 3251496 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-646 36 chr2L 3291254 3291269 chr2L 3291334 3291349 4 79 0.5 4.0 2.2 1.2 95 chr2L 3291254 3` UTR CG9664 - chr2L 3291302 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-646 37 chr2L 3386235 3386270 chr2L 3386343 3386378 5 106 3.5 2.5 3.0 1.2 143 chr2L 3386235 intergenic not near genes chr2L 3386306 intergenic not near genes chr2L 3386378 intergenic CR45301 - chr2L_5_3385001 chr2L_3385001 RAL-646 38 chr2L 3393801 3393817 chr2L 3393872 3393892 4 75 1.0 2.5 1.8 1.4 91 chr2L 3393801 intergenic not near genes chr2L 3393846 intergenic not near genes chr2L 3393892 intergenic not near genes chr2L_4_3390001 chr2L_3390001 RAL-646 39 chr2L 3395028 3395048 chr2L 3395108 3395127 5 81 2.5 2.0 2.2 1.6 99 chr2L 3395028 intergenic not near genes chr2L 3395078 intergenic not near genes chr2L 3395127 intergenic not near genes chr2L_5_3395001 chr2L_3395001 RAL-646 40 chr2L 3508444 3508457 chr2L 3508506 3508530 5 70 1.0 2.5 1.8 1.8 86 chr2L 3508444 intergenic CR45299 +,tim - chr2L 3508487 intergenic CR45299 +,tim - chr2L 3508530 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-646 41 chr2L 3523035 3523045 chr2L 3523148 3523153 4 112 2.0 4.5 3.2 1.0 118 chr2L 3523035 exon Sr-CIV - chr2L 3523094 intron Sr-CIV - chr2L 3523153 exon Sr-CIV - chr2L_4_3520001 chr2L_3520001 RAL-646 42 chr2L 3787006 3787035 chr2L 3787096 3787125 11 84 1.0 5.0 3.0 2.8 119 chr2L 3787006 intergenic CG3921 + chr2L 3787066 intergenic CG3921 + chr2L 3787125 intergenic CG3921 + chr2L_11_3785001 chr2L_3785001 RAL-646 43 chr2L 3891894 3891926 chr2L 3891977 3892011 5 85 2.0 0.5 1.2 2.3 117 chr2L 3891894 intron capu - chr2L 3891952 intron capu - chr2L 3892011 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-646 44 chr2L 4063891 4063897 chr2L 4063968 4063969 4 76 4.0 1.5 2.8 1.1 78 chr2L 4063891 intron ed + chr2L 4063930 intron ed + chr2L 4063969 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-646 45 chr2L 4076111 4076127 chr2L 4076192 4076211 4 83 0.0 1.5 0.8 2.2 100 chr2L 4076111 intron ed + chr2L 4076161 intron ed + chr2L 4076211 intron ed + chr2L_4_4075001 chr2L_4075001 RAL-646 46 chr2L 4125250 4125279 chr2L 4125351 4125384 5 104 0.5 1.5 1.0 2.5 134 chr2L 4125250 intergenic not near genes chr2L 4125317 intergenic not near genes chr2L 4125384 intergenic not near genes chr2L_5_4125001 chr2L_4125001 RAL-646 47 chr2L 4166380 4166409 chr2L 4166463 4166492 6 83 0.5 1.0 0.8 3.3 112 chr2L 4166380 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166492 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-646 48 chr2L 4351482 4351495 chr2L 4351548 4351571 6 72 4.0 2.0 3.0 1.5 89 chr2L 4351482 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351571 intergenic CR44700 + chr2L_6_4350001 chr2L_4350001 RAL-646 49 chr2L 4356633 4356655 chr2L 4356712 4356734 7 79 1.0 4.5 2.8 1.8 101 chr2L 4356633 intergenic not near genes chr2L 4356684 intergenic not near genes chr2L 4356734 intergenic not near genes chr2L_7_4355001 chr2L_4355001 RAL-646 50 chr2L 4601703 4601737 chr2L 4609144 4609178 mdg1 13 7440 3.0 3.0 3.0 3.2 7475 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_13_4605001 chr2L_4605001 RAL-646 51 chr2L 4763566 4763584 chr2L 4763660 4763678 6 94 2.0 3.5 2.8 1.6 112 chr2L 4763566 intron,3` UTR CG15630 -,CG42523 + chr2L 4763622 intron,intron CG15630 -,CG42523 + chr2L 4763678 intron,intron CG15630 -,CG42523 + chr2L_6_4760001 chr2L_4760001 RAL-646 52 chr2L 4819494 4819518 chr2L 4819617 4819641 5 123 1.5 2.5 2.0 1.7 147 chr2L 4819494 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819641 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-646 53 chr2L 4889855 4889870 chr2L 4889938 4889952 4 83 3.5 3.0 3.2 1.0 97 chr2L 4889855 intergenic CG15625 + chr2L 4889904 intergenic CG15625 + chr2L 4889952 intergenic CG15625 + chr2L_4_4885001 chr2L_4885001 RAL-646 54 chr2L 4917315 4917339 chr2L 4917405 4917422 6 86 1.5 6.0 3.8 1.2 107 chr2L 4917315 intron hoe1 - chr2L 4917368 intron hoe1 - chr2L 4917422 intron hoe1 - chr2L_6_4915001 chr2L_4915001 RAL-646 55 chr2L 5120990 5121006 chr2L 5121067 5121100 4 89 0.0 3.5 1.8 1.4 110 chr2L 5120990 intron Msp300 + chr2L 5121045 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-646 56 chr2L 5676895 5676910 chr2L 5676991 5677006 4 96 0.0 0.5 0.2 3.3 111 chr2L 5676895 intergenic not near genes chr2L 5676950 intergenic not near genes chr2L 5677006 intergenic not near genes chr2L_4_5675001 chr2L_5675001 RAL-646 57 chr2L 5805206 5805231 chr2L 5805308 5805312 7 99 3.5 2.5 3.0 1.8 106 chr2L 5805206 intergenic CG11034 + chr2L 5805259 intergenic CG11034 + chr2L 5805312 intergenic CG11034 + chr2L_7_5805001 chr2L_5805001 RAL-646 58 chr2L 5827712 5827741 chr2L 5836719 5836749 roo 5 9007 1.5 1.5 1.5 2.0 9037 chr2L 5827712 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-646 59 chr2L 6050440 6050466 chr2L 6050544 6050570 5 104 1.0 2.0 1.5 2.0 130 chr2L 6050440 intergenic CG12393 +,CG9135 + chr2L 6050505 intergenic CG12393 +,CG9135 + chr2L 6050570 intergenic CG12393 +,CG9135 + chr2L_5_6050001 chr2L_6050001 RAL-646 60 chr2L 6240567 6240578 chr2L 6240644 6240655 4 76 4.5 0.0 2.2 1.2 88 chr2L 6240567 intergenic not near genes chr2L 6240611 intergenic not near genes chr2L 6240655 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-646 61 chr2L 6268525 6268536 chr2L 6268611 6268622 4 86 1.0 0.5 0.8 2.2 97 chr2L 6268525 intron Ddr + chr2L 6268574 intron Ddr + chr2L 6268622 intron Ddr + chr2L_4_6265001 chr2L_6265001 RAL-646 62 chr2L 6343669 6343673 chr2L 6343983 6343987 5 314 17.5 11.5 14.5 0.3 318 chr2L 6343669 intron Cpr + chr2L 6343828 intron Cpr + chr2L 6343987 intron Cpr + chr2L_5_6340001 chr2L_6340001 RAL-646 63 chr2L 6346088 6346092 chr2L 6349451 6349477 4 3369 6.5 6.5 6.5 0.5 3389 chr2L 6346088 3` UTR Cpr + chr2L 6347782 intron CG9497 - chr2L 6349477 3` UTR CG9498 - chr2L_4_6345001 chr2L_6345001 RAL-646 64 chr2L 6426858 6426889 chr2L 6445118 6445149 roo 11 18260 2.5 3.0 2.8 2.9 18291 chr2L 6426858 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445149 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-646 65 chr2L 6598120 6598147 chr2L 6599077 6599092 8 953 1.0 1.5 1.2 3.6 972 chr2L 6598120 intron CG11319 - chr2L 6598606 intron CG11319 - chr2L 6599092 intron CG11319 - chr2L_8_6595001 chr2L_6595001 RAL-646 66 chr2L 6626888 6626911 chr2L 6626973 6626994 5 83 2.0 2.0 2.0 1.7 106 chr2L 6626888 intron Oatp26F - chr2L 6626941 intron Oatp26F - chr2L 6626994 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-646 67 chr2L 7351052 7351072 chr2L 7351159 7351179 5 107 2.5 2.5 2.5 1.4 127 chr2L 7351052 intron Wnt6 + chr2L 7351116 intron Wnt6 + chr2L 7351179 intron Wnt6 + chr2L_5_7350001 chr2L_7350001 RAL-646 68 chr2L 7461055 7461077 chr2L 7461310 7461316 6 250 0.0 4.5 2.2 1.9 261 chr2L 7461055 intron Gr28b - chr2L 7461186 intron Gr28b - chr2L 7461316 intron Gr28b - chr2L_6_7460001 chr2L_7460001 RAL-646 69 chr2L 7473334 7473365 chr2L 7473506 7473535 14 171 18.5 24.0 21.2 0.6 201 chr2L 7473334 intron Ziz - chr2L 7473434 intron Ziz - chr2L 7473535 intron Ziz - chr2L_14_7470001 chr2L_7470001 RAL-646 70 chr2L 7829292 7829298 chr2L 7829370 7829395 4 92 1.5 2.5 2.0 1.3 103 chr2L 7829292 intron mts + chr2L 7829344 intron mts + chr2L 7829395 intron mts + chr2L_4_7825001 chr2L_7825001 RAL-646 71 chr2L 7867574 7867602 chr2L 7867666 7867696 4 90 2.0 0.0 1.0 2.0 122 chr2L 7867574 intron Proc - chr2L 7867635 intron Proc - chr2L 7867696 intron Proc - chr2L_4_7865001 chr2L_7865001 RAL-646 72 chr2L 7959049 7959060 chr2L 7960460 7960471 pogo 4 1411 1.5 0.5 1.0 2.0 1422 chr2L 7959049 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960471 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-646 73 chr2L 7977092 7977110 chr2L 7984068 7984086 297 9 6975 0.5 2.5 1.5 3.6 6994 chr2L 7977092 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984086 intron,5` UTR Snoo -,CG7231 + chr2L_9_7980001 chr2L_7980001 RAL-646 74 chr2L 8085307 8085331 chr2L 8085496 8085521 4 189 1.0 1.5 1.2 1.8 214 chr2L 8085307 intron Bsg + chr2L 8085414 intron Bsg + chr2L 8085521 intron Bsg + chr2L_4_8085001 chr2L_8085001 RAL-646 75 chr2L 8258172 8258201 chr2L 8258269 8258277 5 91 2.0 0.5 1.2 2.3 105 chr2L 8258172 intergenic Btk29A -,mir-2b-1 - chr2L 8258224 intergenic Btk29A -,mir-2b-1 - chr2L 8258277 intergenic Btk29A -,mir-2b-1 - chr2L_5_8255001 chr2L_8255001 RAL-646 76 chr2L 8332728 8332758 chr2L 8332809 8332839 7 80 1.0 0.5 0.8 3.9 111 chr2L 8332728 3` UTR CG14275 + chr2L 8332784 3` UTR CG14275 + chr2L 8332839 3` UTR CG14275 + chr2L_7_8330001 chr2L_8330001 RAL-646 77 chr2L 8336944 8336964 chr2L 8337023 8337040 4 74 0.0 4.0 2.0 1.3 96 chr2L 8336944 intergenic not near genes chr2L 8336992 intergenic not near genes chr2L 8337040 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-646 78 chr2L 8412963 8412981 chr2L 8413037 8413058 4 75 0.5 0.0 0.2 3.3 95 chr2L 8412963 3` UTR CG13398 - chr2L 8413010 3` UTR CG13398 - chr2L 8413058 3` UTR CG13398 - chr2L_4_8410001 chr2L_8410001 RAL-646 79 chr2L 8629267 8629291 chr2L 8629344 8629369 5 77 1.0 0.5 0.8 2.8 102 chr2L 8629267 intron Sema-1a + chr2L 8629318 intron Sema-1a + chr2L 8629369 intron Sema-1a + chr2L_5_8625001 chr2L_8625001 RAL-646 80 chr2L 8651869 8651879 chr2L 8651945 8651956 4 76 3.5 2.0 2.8 1.1 87 chr2L 8651869 intron Sema-1a + chr2L 8651912 intron Sema-1a + chr2L 8651956 intron Sema-1a + chr2L_4_8650001 chr2L_8650001 RAL-646 81 chr2L 8799802 8799832 chr2L 8799918 8799935 5 111 2.0 0.5 1.2 2.3 133 chr2L 8799802 intergenic not near genes chr2L 8799868 intergenic not near genes chr2L 8799935 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-646 82 chr2L 9000282 9000307 chr2L 9007792 9007817 roo 8 7510 0.5 0.0 0.2 6.7 7535 chr2L 9000282 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-646 83 chr2L 9084337 9084340 chr2L 16217660 16217660 5 7133321 6.5 13.5 10.0 0.5 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-646 84 chr2L 9287322 9287348 chr2L 9287419 9287443 5 97 1.0 0.5 0.8 2.8 121 chr2L 9287322 intron Ggamma30A + chr2L 9287382 intron Ggamma30A + chr2L 9287443 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-646 85 chr2L 9297378 9297404 chr2L 9297454 9297481 10 77 1.5 3.5 2.5 2.9 103 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297481 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-646 86 chr2L 9303481 9303495 chr2L 9303558 9303572 4 77 0.0 4.0 2.0 1.3 91 chr2L 9303481 intergenic not near genes chr2L 9303526 intergenic not near genes chr2L 9303572 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-646 87 chr2L 9393500 9393531 chr2L 9396465 9396498 jockey 9 2965 3.0 4.5 3.8 1.9 2998 chr2L 9393500 intron Shawl - chr2L 9394999 intron Shawl - chr2L 9396498 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-646 88 chr2L 9417709 9417722 chr2L 9418024 9418036 5 314 6.0 1.5 3.8 1.0 327 chr2L 9417709 intron Mco1 + chr2L 9417872 intron Mco1 + chr2L 9418036 intron Mco1 + chr2L_5_9415001 chr2L_9415001 RAL-646 89 chr2L 9457098 9457103 chr2L 9457148 9457180 5 67 3.5 2.5 3.0 1.2 82 chr2L 9457098 intron numb + chr2L 9457139 intron numb + chr2L 9457180 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-646 90 chr2L 9849052 9849077 chr2L 9849390 9849414 5 337 4.5 3.0 3.8 1.0 362 chr2L 9849052 intron nAChRalpha6 - chr2L 9849233 intron nAChRalpha6 - chr2L 9849414 intron nAChRalpha6 - chr2L_5_9845001 chr2L_9845001 RAL-646 91 chr2L 9973730 9973758 chr2L 9980843 9980877 HMS-Beagle 14 7115 4.0 2.0 3.0 3.5 7147 chr2L 9973730 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-646 92 chr2L 9986356 9986374 chr2L 9986451 9986468 6 94 2.5 2.0 2.2 1.9 112 chr2L 9986356 intron bib + chr2L 9986412 intron bib + chr2L 9986468 intron bib + chr2L_6_9985001 chr2L_9985001 RAL-646 93 chr2L 10051728 10051752 chr2L 10051811 10051829 7 82 2.5 3.5 3.0 1.8 101 chr2L 10051728 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051829 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-646 94 chr2L 10146028 10146055 chr2L 10146366 10146393 14 337 2.5 2.5 2.5 4.0 365 chr2L 10146028 intron,5` UTR CG44153 -,CG4839 + chr2L 10146210 intron,5` UTR CG44153 -,CG4839 + chr2L 10146393 intron,5` UTR CG44153 -,CG4839 + chr2L_14_10145001 chr2L_10145001 RAL-646 95 chr2L 10153202 10153237 chr2L 10153279 10153307 9 76 1.5 2.5 2.0 3.0 105 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153254 intron,intron CG44153 -,CG4839 + chr2L 10153307 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-646 96 chr2L 10474382 10474409 chr2L 10474463 10474485 4 78 2.5 0.0 1.2 1.8 103 chr2L 10474382 intergenic RluA-1 - chr2L 10474434 intergenic RluA-1 - chr2L 10474485 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 RAL-646 97 chr2L 10850161 10850178 chr2L 10850254 10850272 6 94 4.5 9.5 7.0 0.8 111 chr2L 10850161 5` UTR,5` UTR porin -,CG43129 + chr2L 10850216 5` UTR,5` UTR porin -,CG43129 + chr2L 10850272 5` UTR,intron porin -,CG43129 + chr2L_6_10850001 chr2L_10850001 RAL-646 98 chr2L 10862847 10862875 chr2L 10864460 10864489 Rt1c 9 1612 4.0 6.5 5.2 1.5 1642 chr2L 10862847 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-646 99 chr2L 10945073 10945093 chr2L 10945332 10945352 5 255 2.5 1.5 2.0 1.7 279 chr2L 10945073 intron dpr2 - chr2L 10945212 intron dpr2 - chr2L 10945352 intron dpr2 - chr2L_5_10945001 chr2L_10945001 RAL-646 100 chr2L 10946955 10946977 chr2L 10956168 10956192 roo 12 9215 1.5 8.0 4.8 2.1 9237 chr2L 10946955 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-646 101 chr2L 11188790 11188813 chr2L 11188853 11188891 4 75 0.5 2.5 1.5 1.6 101 chr2L 11188790 intron Ca-beta - chr2L 11188840 intron Ca-beta - chr2L 11188891 intron Ca-beta - chr2L_4_11185001 chr2L_11185001 RAL-646 102 chr2L 11224065 11224090 chr2L 11224176 11224199 5 107 2.5 1.0 1.8 1.8 134 chr2L 11224065 intron ab + chr2L 11224132 intron ab + chr2L 11224199 intron ab + chr2L_5_11220001 chr2L_11220001 RAL-646 103 chr2L 11248575 11248588 chr2L 11248658 11248671 4 83 5.5 4.0 4.8 0.7 96 chr2L 11248575 intron ab + chr2L 11248623 intron ab + chr2L 11248671 intron ab + chr2L_4_11245001 chr2L_11245001 RAL-646 104 chr2L 11293738 11293745 chr2L 11293873 11293881 4 136 0.0 3.0 1.5 1.6 143 chr2L 11293738 intergenic not near genes chr2L 11293810 intergenic not near genes chr2L 11293881 intergenic not near genes chr2L_4_11290001 chr2L_11290001 RAL-646 105 chr2L 11418669 11418682 chr2L 11418746 11418761 4 77 2.5 2.0 2.2 1.2 92 chr2L 11418669 intergenic not near genes chr2L 11418715 intergenic not near genes chr2L 11418761 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-646 106 chr2L 11563640 11563669 chr2L 11568844 11568873 copia 7 5204 3.0 5.0 4.0 1.4 5233 chr2L 11563640 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-646 107 chr2L 11612663 11612691 chr2L 11612751 11612777 9 88 5.0 1.5 3.2 2.1 114 chr2L 11612663 intron kek2 + chr2L 11612720 intron kek2 + chr2L 11612777 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-646 108 chr2L 11672147 11672158 chr2L 11672254 11672265 4 107 0.5 0.0 0.2 3.3 118 chr2L 11672147 intergenic not near genes chr2L 11672206 intergenic not near genes chr2L 11672265 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-646 109 chr2L 11820434 11820468 chr2L 11820515 11820549 5 81 0.5 2.0 1.2 2.3 115 chr2L 11820434 intron Pde1c - chr2L 11820492 intron Pde1c - chr2L 11820549 intron Pde1c - chr2L_5_11820001 chr2L_11820001 RAL-646 110 chr2L 11906705 11906724 chr2L 11906800 11906823 6 98 2.5 2.0 2.2 1.9 118 chr2L 11906705 intron Pde1c - chr2L 11906764 intron Pde1c - chr2L 11906823 intron Pde1c - chr2L_6_11905001 chr2L_11905001 RAL-646 111 chr2L 12008550 12008574 chr2L 12008629 12008653 8 73 2.5 1.0 1.8 2.9 103 chr2L 12008550 exon Rh5 + chr2L 12008602 exon Rh5 + chr2L 12008653 exon Rh5 + chr2L_8_12005001 chr2L_12005001 RAL-646 112 chr2L 12157611 12157641 chr2L 12157690 12157720 7 79 3.0 2.0 2.5 2.0 109 chr2L 12157611 intron CG31760 + chr2L 12157666 intron CG31760 + chr2L 12157720 intron CG31760 + chr2L_7_12155001 chr2L_12155001 RAL-646 113 chr2L 12264921 12264938 chr2L 12264998 12265016 5 78 0.5 0.0 0.2 4.2 95 chr2L 12264921 intron aret + chr2L 12264968 intron aret + chr2L 12265016 intron aret + chr2L_5_12260001 chr2L_12260001 RAL-646 114 chr2L 12321228 12321266 chr2L 12321305 12321344 4 76 1.0 1.0 1.0 2.0 116 chr2L 12321228 intergenic not near genes chr2L 12321286 intergenic not near genes chr2L 12321344 intergenic not near genes chr2L_4_12320001 chr2L_12320001 RAL-646 115 chr2L 12420968 12420990 chr2L 12421299 12421321 6 331 3.0 0.0 1.5 2.4 353 chr2L 12420968 intron vir-1 - chr2L 12421144 intron vir-1 - chr2L 12421321 intron vir-1 - chr2L_6_12420001 chr2L_12420001 RAL-646 116 chr2L 12558328 12558346 chr2L 12565456 12565474 HMS-Beagle 7 7128 0.5 1.5 1.0 3.5 7146 chr2L 12558328 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565474 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-646 117 chr2L 12731056 12731082 chr2L 12735823 12735849 F-element 4 4767 1.0 1.0 1.0 2.0 4793 chr2L 12731056 intron MRP + chr2L 12733452 intron MRP + chr2L 12735849 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-646 118 chr2L 12739175 12739203 chr2L 12743955 12743984 Doc 6 4781 2.0 4.0 3.0 1.5 4809 chr2L 12739175 exon MRP + chr2L 12741580 intron MRP + chr2L 12743984 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-646 119 chr2L 12861693 12861730 chr2L 12863160 12863180 hobo 11 1462 2.5 2.5 2.5 3.1 1487 chr2L 12861693 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_11_12860001 chr2L_12860001 RAL-646 120 chr2L 12933849 12933883 chr2L 12941316 12941348 blood 6 7465 2.0 3.5 2.8 1.6 7499 chr2L 12933849 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-646 121 chr2L 13035386 13035409 chr2L 13035463 13035480 7 73 3.5 5.0 4.2 1.3 94 chr2L 13035386 intron CG9932 - chr2L 13035433 intron CG9932 - chr2L 13035480 intron CG9932 - chr2L_7_13035001 chr2L_13035001 RAL-646 122 chr2L 13038144 13038167 chr2L 13038246 13038249 5 98 5.0 3.0 4.0 1.0 105 chr2L 13038144 intron CG9932 - chr2L 13038196 intron CG9932 - chr2L 13038249 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-646 123 chr2L 13152228 13152259 chr2L 13152306 13152337 5 77 5.5 3.0 4.2 1.0 109 chr2L 13152228 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-646 124 chr2L 13405657 13405665 chr2L 13410444 13410462 Doc 4 4794 5.0 1.5 3.2 1.0 4805 chr2L 13405657 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410462 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-646 125 chr2L 13449461 13449484 chr2L 13456897 13456920 Quasimodo 4 7436 3.5 1.0 2.2 1.2 7459 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453190 intron CG42784 + chr2L 13456920 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-646 126 chr2L 13481452 13481469 chr2L 13482057 13482076 jockey 4 606 2.5 5.0 3.8 0.8 624 chr2L 13481452 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482076 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-646 127 chr2L 13622138 13622170 chr2L 13622237 13622240 4 84 1.0 0.0 0.5 2.7 102 chr2L 13622138 intron kuz + chr2L 13622189 intron kuz + chr2L 13622240 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-646 128 chr2L 13631759 13631784 chr2L 13631901 13631921 7 141 1.0 2.5 1.8 2.5 162 chr2L 13631759 intron kuz + chr2L 13631840 intron kuz + chr2L 13631921 intron kuz + chr2L_7_13630001 chr2L_13630001 RAL-646 129 chr2L 13693012 13693029 chr2L 13693085 13693098 4 73 3.0 1.5 2.2 1.2 86 chr2L 13693012 intron CG31814 - chr2L 13693055 intron CG31814 - chr2L 13693098 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-646 130 chr2L 13761825 13761835 chr2L 13762935 13762946 Doc 4 1110 3.0 1.5 2.2 1.2 1121 chr2L 13761825 intron TM9SF4 + chr2L 13762386 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-646 131 chr2L 13794701 13794731 chr2L 13794801 13794830 8 99 3.0 3.5 3.2 1.9 129 chr2L 13794701 intron Sec71 + chr2L 13794766 intron Sec71 + chr2L 13794830 intron Sec71 + chr2L_8_13790001 chr2L_13790001 RAL-646 132 chr2L 13853083 13853112 chr2L 13862233 13862262 roo 7 9147 1.5 1.0 1.2 3.2 9179 chr2L 13853083 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862262 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-646 133 chr2L 13904580 13904610 chr2L 13904661 13904673 8 79 1.0 0.5 0.8 4.4 93 chr2L 13904580 intergenic Smg5 - chr2L 13904626 intergenic Smg5 - chr2L 13904673 intergenic Smg5 - chr2L_8_13900001 chr2L_13900001 RAL-646 134 chr2L 13981521 13981553 chr2L 13981612 13981644 9 90 1.5 2.0 1.8 3.2 123 chr2L 13981521 exon NimC2 + chr2L 13981582 intron NimC2 + chr2L 13981644 intron NimC2 + chr2L_9_13980001 chr2L_13980001 RAL-646 135 chr2L 14046189 14046211 chr2L 14046272 14046294 7 81 1.5 1.5 1.5 2.8 105 chr2L 14046189 intron nAChRalpha5 + chr2L 14046242 intron nAChRalpha5 + chr2L 14046294 intron nAChRalpha5 + chr2L_7_14045001 chr2L_14045001 RAL-646 136 chr2L 14109512 14109544 chr2L 14109603 14109633 4 90 2.0 0.5 1.2 1.8 121 chr2L 14109512 intergenic CG15293 -,CG31769 - chr2L 14109572 intergenic CG31769 -,CG15293 - chr2L 14109633 3` UTR CG31769 - chr2L_4_14105001 chr2L_14105001 RAL-646 137 chr2L 14118683 14118690 chr2L 14118761 14118789 5 95 2.0 2.5 2.2 1.6 106 chr2L 14118683 intergenic not near genes chr2L 14118736 intergenic not near genes chr2L 14118789 intergenic not near genes chr2L_5_14115001 chr2L_14115001 RAL-646 138 chr2L 14621374 14621403 chr2L 14621474 14621503 9 99 3.0 2.5 2.8 2.4 129 chr2L 14621374 intron osp - chr2L 14621438 intron osp - chr2L 14621503 intron osp - chr2L_9_14620001 chr2L_14620001 RAL-646 139 chr2L 14642569 14642604 chr2L 14651732 14651767 roo 5 9163 2.5 2.5 2.5 1.4 9198 chr2L 14642569 intron osp - chr2L 14647168 intron osp - chr2L 14651767 intron osp - chr2L_5_14645001 chr2L_14645001 RAL-646 140 chr2L 14707229 14707239 chr2L 14707347 14707358 4 119 1.0 1.0 1.0 2.0 129 chr2L 14707229 intergenic not near genes chr2L 14707294 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-646 141 chr2L 14716622 14716635 chr2L 14716687 14716713 5 70 1.0 1.0 1.0 2.5 91 chr2L 14716622 intergenic not near genes chr2L 14716668 intergenic not near genes chr2L 14716713 intergenic not near genes chr2L_5_14715001 chr2L_14715001 RAL-646 142 chr2L 14794299 14794316 chr2L 14794499 14794530 4 210 0.5 2.5 1.5 1.6 231 chr2L 14794299 intergenic CG18420 - chr2L 14794414 intergenic CG18420 - chr2L 14794530 3` UTR CG18420 - chr2L_4_14790001 chr2L_14790001 RAL-646 143 chr2L 14803886 14803909 chr2L 14809081 14809110 copia 8 5196 3.5 2.5 3.0 2.0 5224 chr2L 14803886 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-646 144 chr2L 14862888 14862916 chr2L 14862975 14863007 6 83 1.5 2.0 1.8 2.1 119 chr2L 14862888 intergenic not near genes chr2L 14862948 intergenic not near genes chr2L 14863007 intergenic not near genes chr2L_6_14860001 chr2L_14860001 RAL-646 145 chr2L 14889960 14889986 chr2L 14890385 14890410 jockey 6 425 1.5 1.5 1.5 2.4 450 chr2L 14889960 intergenic not near genes chr2L 14890185 intergenic not near genes chr2L 14890410 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-646 146 chr2L 14909573 14909584 chr2L 14909651 14909673 4 86 0.5 0.0 0.2 3.3 100 chr2L 14909573 intron CG42313 - chr2L 14909623 intron CG42313 - chr2L 14909673 intron CG42313 - chr2L_4_14905001 chr2L_14905001 RAL-646 147 chr2L 14920036 14920057 chr2L 14920115 14920136 4 79 3.0 1.0 2.0 1.3 100 chr2L 14920036 intron CG42313 - chr2L 14920086 intron CG42313 - chr2L 14920136 intron CG42313 - chr2L_4_14920001 chr2L_14920001 RAL-646 148 chr2L 15204291 15204310 chr2L 15204566 15204589 7 280 0.5 3.5 2.0 2.3 298 chr2L 15204291 intergenic CR43357 + chr2L 15204440 intergenic CR43357 + chr2L 15204589 intergenic not near genes chr2L_7_15200001 chr2L_15200001 RAL-646 149 chr2L 15313747 15313776 chr2L 15313861 15313878 10 114 4.0 4.0 4.0 2.0 131 chr2L 15313747 intergenic not near genes chr2L 15313812 intergenic not near genes chr2L 15313878 intergenic not near genes chr2L_10_15310001 chr2L_15310001 RAL-646 150 chr2L 15514320 15514331 chr2L 15514404 15514413 4 84 2.0 4.5 3.2 1.0 93 chr2L 15514320 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514413 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-646 151 chr2L 15535891 15535909 chr2L 15535973 15535984 5 82 3.5 0.5 2.0 1.7 93 chr2L 15535891 intergenic not near genes chr2L 15535938 intergenic not near genes chr2L 15535984 intergenic not near genes chr2L_5_15535001 chr2L_15535001 RAL-646 152 chr2L 15544384 15544400 chr2L 15544459 15544476 5 75 5.0 0.5 2.8 1.3 92 chr2L 15544384 intergenic not near genes chr2L 15544430 intergenic not near genes chr2L 15544476 intergenic not near genes chr2L_5_15540001 chr2L_15540001 RAL-646 153 chr2L 15586417 15586438 chr2L 15593469 15593490 297 6 7051 0.0 1.0 0.5 4.0 7073 chr2L 15586417 intergenic not near genes chr2L 15589954 intergenic not near genes chr2L 15593490 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-646 154 chr2L 15837130 15837156 chr2L 15837219 15837245 8 89 1.0 0.5 0.8 4.4 115 chr2L 15837130 intergenic not near genes chr2L 15837188 intergenic not near genes chr2L 15837245 intergenic not near genes chr2L_8_15835001 chr2L_15835001 RAL-646 155 chr2L 16001363 16001372 chr2L 16001457 16001466 7 94 0.5 1.5 1.0 3.5 103 chr2L 16001363 intron beat-Ic + chr2L 16001414 intron beat-Ic + chr2L 16001466 intron beat-Ic + chr2L_7_16000001 chr2L_16000001 RAL-646 156 chr2L 16021827 16021861 chr2L 16021909 16021940 6 80 1.0 1.0 1.0 3.0 113 chr2L 16021827 intron beat-Ic + chr2L 16021884 intron beat-Ic + chr2L 16021940 intron beat-Ic + chr2L_6_16020001 chr2L_16020001 RAL-646 157 chr2L 16034734 16034764 chr2L 16034815 16034847 8 79 2.0 1.5 1.8 2.9 113 chr2L 16034734 intron beat-Ic + chr2L 16034790 intron beat-Ic + chr2L 16034847 intron beat-Ic + chr2L_8_16030001 chr2L_16030001 RAL-646 158 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 9.0 13.5 11.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-646 159 chr2L 9084337 9084340 chr2L 16217660 16217660 11 7133321 6.5 13.5 10.0 1.0 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_12650001 chr2L_12650001 RAL-646 160 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 9.0 13.5 11.2 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-646 161 chr2L 16243694 16243834 chr2L 16243776 16243929 6 88 1.5 2.0 1.8 2.1 235 chr2L 16243694 exon CG42818 + chr2L 16243812 exon CG42818 + chr2L 16243929 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-646 162 chr2L 16263989 16264014 chr2L 16264080 16264105 5 90 3.5 1.0 2.2 1.6 116 chr2L 16263989 3` UTR crp - chr2L 16264047 3` UTR crp - chr2L 16264105 3` UTR crp - chr2L_5_16260001 chr2L_16260001 RAL-646 163 chr2L 16280259 16280287 chr2L 16281426 16281441 1360 8 1165 5.0 5.5 5.2 1.3 1182 chr2L 16280259 intron crp - chr2L 16280850 intron crp - chr2L 16281441 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-646 164 chr2L 16452824 16452853 chr2L 16452981 16453008 9 156 2.0 5.5 3.8 1.9 184 chr2L 16452824 exon Idgf3 + chr2L 16452916 3` UTR Idgf3 + chr2L 16453008 3` UTR Idgf3 + chr2L_9_16450001 chr2L_16450001 RAL-646 165 chr2L 16952684 16952717 chr2L 16952793 16952826 10 108 1.0 1.5 1.2 4.5 142 chr2L 16952684 intergenic not near genes chr2L 16952755 intergenic not near genes chr2L 16952826 intergenic not near genes chr2L_10_16950001 chr2L_16950001 RAL-646 166 chr2L 17003728 17003761 chr2L 17003854 17003886 4 123 2.0 3.0 2.5 1.1 158 chr2L 17003728 intergenic not near genes chr2L 17003807 intergenic not near genes chr2L 17003886 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-646 167 chr2L 17050031 17050046 chr2L 17050104 17050132 4 75 1.5 1.0 1.2 1.8 101 chr2L 17050031 intergenic not near genes chr2L 17050082 intergenic not near genes chr2L 17050132 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-646 168 chr2L 17062761 17062792 chr2L 17062843 17062874 4 82 0.0 1.0 0.5 2.7 113 chr2L 17062761 intergenic not near genes chr2L 17062818 intergenic not near genes chr2L 17062874 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-646 169 chr2L 17122779 17122792 chr2L 17122862 17122870 4 82 3.5 1.5 2.5 1.1 91 chr2L 17122779 intergenic not near genes chr2L 17122824 intergenic CG31784 - chr2L 17122870 intergenic CG31784 - chr2L_4_17120001 chr2L_17120001 RAL-646 170 chr2L 17273193 17273227 chr2L 17277976 17278010 F-element 6 4783 2.0 2.5 2.2 1.9 4817 chr2L 17273193 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278010 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-646 171 chr2L 17292883 17292910 chr2L 17292961 17292987 7 77 3.5 2.0 2.8 1.8 104 chr2L 17292883 intergenic not near genes chr2L 17292935 intergenic not near genes chr2L 17292987 intergenic not near genes chr2L_7_17290001 chr2L_17290001 RAL-646 172 chr2L 17319115 17319134 chr2L 17319191 17319210 4 76 1.0 3.0 2.0 1.3 95 chr2L 17319115 3` UTR CR45696 - chr2L 17319162 3` UTR CR45696 - chr2L 17319210 3` UTR CR45696 - chr2L_4_17315001 chr2L_17315001 RAL-646 173 chr2L 17554077 17554089 chr2L 17554153 17554165 8 75 1.0 0.5 0.8 4.4 88 chr2L 17554077 intergenic CG7094 - chr2L 17554121 intergenic CG7094 - chr2L 17554165 intergenic CG7094 - chr2L_8_17550001 chr2L_17550001 RAL-646 174 chr2L 17624238 17624268 chr2L 17624364 17624387 4 124 2.5 0.5 1.5 1.6 149 chr2L 17624238 intergenic not near genes chr2L 17624312 intergenic not near genes chr2L 17624387 intergenic not near genes chr2L_4_17620001 chr2L_17620001 RAL-646 175 chr2L 17726815 17726836 chr2L 17727136 17727154 4 318 4.5 2.0 3.2 1.0 339 chr2L 17726815 intron CadN - chr2L 17726984 intron CadN - chr2L 17727154 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-646 176 chr2L 17911965 17911985 chr2L 17914143 17914163 pogo 4 2178 2.5 1.5 2.0 1.3 2198 chr2L 17911965 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914163 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-646 177 chr2L 18026981 18027013 chr2L 18027321 18027351 4 338 1.5 1.5 1.5 1.6 370 chr2L 18026981 5` UTR rdo + chr2L 18027166 intron rdo + chr2L 18027351 intron rdo + chr2L_4_18025001 chr2L_18025001 RAL-646 178 chr2L 18051882 18051899 chr2L 18061026 18061046 roo 4 9146 2.0 2.0 2.0 1.3 9164 chr2L 18051882 intron rdo + chr2L 18056464 intron rdo + chr2L 18061046 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-646 179 chr2L 18073444 18073454 chr2L 18073541 18073568 5 104 1.0 2.0 1.5 2.0 124 chr2L 18073444 intergenic not near genes chr2L 18073506 intergenic not near genes chr2L 18073568 intergenic not near genes chr2L_5_18070001 chr2L_18070001 RAL-646 180 chr2L 18199042 18199059 chr2L 18199123 18199140 4 81 1.5 1.0 1.2 1.8 98 chr2L 18199042 intron CG42750 - chr2L 18199091 intron CG42750 - chr2L 18199140 intron CG42750 - chr2L_4_18195001 chr2L_18195001 RAL-646 181 chr2L 18235066 18235089 chr2L 18235194 18235221 7 129 1.5 2.5 2.0 2.3 155 chr2L 18235066 intron CG42750 - chr2L 18235144 intron CG42750 - chr2L 18235221 intron CG42750 - chr2L_7_18235001 chr2L_18235001 RAL-646 182 chr2L 18254810 18254839 chr2L 18254910 18254939 5 100 0.0 1.0 0.5 3.3 129 chr2L 18254810 intron CG42750 - chr2L 18254874 intron CG42750 - chr2L 18254939 intron CG42750 - chr2L_5_18250001 chr2L_18250001 RAL-646 183 chr2L 18264141 18264176 chr2L 18264229 18264264 10 88 0.5 0.0 0.2 8.3 123 chr2L 18264141 intron CG42750 - chr2L 18264202 intron CG42750 - chr2L 18264264 intron CG42750 - chr2L_10_18260001 chr2L_18260001 RAL-646 184 chr2L 18440330 18440351 chr2L 18440433 18440457 4 105 1.0 2.5 1.8 1.4 127 chr2L 18440330 intergenic not near genes chr2L 18440394 intergenic not near genes chr2L 18440457 intergenic not near genes chr2L_4_18440001 chr2L_18440001 RAL-646 185 chr2L 18546230 18546255 chr2L 18546316 18546339 8 85 2.5 1.5 2.0 2.7 109 chr2L 18546230 intron Pde11 - chr2L 18546284 intron Pde11 - chr2L 18546339 intron Pde11 - chr2L_8_18545001 chr2L_18545001 RAL-646 186 chr2L 18561556 18561575 chr2L 18561657 18561676 6 100 2.0 1.0 1.5 2.4 120 chr2L 18561556 intron Pde11 - chr2L 18561616 intron Pde11 - chr2L 18561676 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-646 187 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405059 14.0 19.0 16.5 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-646 188 chr2L 18664599 18664614 chr2L 18664653 18664690 5 69 0.5 2.0 1.2 2.3 91 chr2L 18664599 intergenic not near genes chr2L 18664644 intergenic not near genes chr2L 18664690 intergenic not near genes chr2L_5_18660001 chr2L_18660001 RAL-646 189 chr2L 18812556 18812589 chr2L 18812819 18812843 10 262 0.0 1.0 0.5 6.7 287 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812700 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812843 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-646 190 chr2L 18883852 18883888 chr2L 18883934 18883970 5 80 1.0 4.0 2.5 1.4 118 chr2L 18883852 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-646 191 chr2L 19147373 19147400 chr2L 19154408 19154435 297 4 7035 2.0 1.5 1.8 1.4 7062 chr2L 19147373 intron brat + chr2L 19150904 intron brat + chr2L 19154435 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-646 192 chr2L 19270911 19270926 chr2L 19271000 19271016 4 90 0.5 4.0 2.2 1.2 105 chr2L 19270911 intron CR44190 - chr2L 19270964 intron CR44190 - chr2L 19271016 intron CR44190 - chr2L_4_19270001 chr2L_19270001 RAL-646 193 chr2L 19369706 19369727 chr2L 19369842 19369861 4 136 1.5 4.0 2.8 1.1 155 chr2L 19369706 intergenic not near genes chr2L 19369784 intergenic not near genes chr2L 19369861 intergenic not near genes chr2L_4_19365001 chr2L_19365001 RAL-646 194 chr2L 19378339 19378368 chr2L 19378422 19378451 5 82 3.5 1.5 2.5 1.4 112 chr2L 19378339 intergenic not near genes chr2L 19378395 intergenic not near genes chr2L 19378451 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-646 195 chr2L 19441069 19441080 chr2L 19441145 19441157 5 77 0.5 2.5 1.5 2.0 88 chr2L 19441069 intron CG10237 - chr2L 19441113 intron CG10237 - chr2L 19441157 intron CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-646 196 chr2L 19601572 19601593 chr2L 19601649 19601670 4 76 0.5 2.5 1.5 1.6 98 chr2L 19601572 intron,intron Lar +,CR44978 - chr2L 19601621 intron,intron Lar +,CR44978 - chr2L 19601670 intron,intron Lar +,CR44978 - chr2L_4_19600001 chr2L_19600001 RAL-646 197 chr2L 19620100 19620131 chr2L 19621089 19621117 jockey 8 988 5.0 6.5 5.8 1.2 1017 chr2L 19620100 intron Lar + chr2L 19620608 intron Lar + chr2L 19621117 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-646 198 chr2L 19652569 19652601 chr2L 19674004 19674032 opus 4 21432 2.0 0.5 1.2 1.8 21463 chr2L 19652569 intron Lar + chr2L 19663300 intron Lar + chr2L 19674032 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-646 199 chr2L 19703549 19703562 chr2L 19712683 19712698 roo 4 9134 2.5 2.0 2.2 1.2 9149 chr2L 19703549 intron Lar + chr2L 19708124 intron Lar + chr2L 19712698 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-646 200 chr2L 19737368 19737379 chr2L 19740836 19740848 1360 7 3467 4.0 4.0 4.0 1.4 3480 chr2L 19737368 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740848 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-646 201 chr2L 19737381 19737389 chr2L 19740835 19740838 1360 4 3452 3.5 4.0 3.8 0.8 3457 chr2L 19737381 intergenic Nf-YB + chr2L 19739110 intergenic not near genes chr2L 19740838 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-646 202 chr2L 19837283 19837307 chr2L 19837363 19837382 7 77 1.0 5.5 3.2 1.7 99 chr2L 19837283 intron sick + chr2L 19837332 intron sick + chr2L 19837382 intron sick + chr2L_7_19835001 chr2L_19835001 RAL-646 203 chr2L 19994650 19994678 chr2L 19994730 19994749 5 78 1.5 2.0 1.8 1.8 99 chr2L 19994650 intron CG43861 - chr2L 19994700 intron CG43861 - chr2L 19994749 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-646 204 chr2L 20005882 20005903 chr2L 20010957 20010979 flea 4 5076 0.5 4.0 2.2 1.2 5097 chr2L 20005882 intron CG43861 - chr2L 20008430 intron CG43861 - chr2L 20010979 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-646 205 chr2L 20085467 20085495 chr2L 20085557 20085587 12 88 0.5 2.5 1.5 4.8 120 chr2L 20085467 intron neb + chr2L 20085527 intron neb + chr2L 20085587 intron neb + chr2L_12_20085001 chr2L_20085001 RAL-646 206 chr2L 20124329 20124357 chr2L 20124407 20124435 5 78 1.0 1.0 1.0 2.5 106 chr2L 20124329 intergenic not near genes chr2L 20124382 intergenic not near genes chr2L 20124435 intergenic not near genes chr2L_5_20120001 chr2L_20120001 RAL-646 207 chr2L 20296521 20296535 chr2L 20296602 20296616 5 80 0.0 2.0 1.0 2.5 95 chr2L 20296521 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296616 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-646 208 chr2L 20376074 20376092 chr2L 20376192 20376209 9 117 3.0 2.0 2.5 2.6 135 chr2L 20376074 intergenic not near genes chr2L 20376142 intergenic not near genes chr2L 20376209 intergenic not near genes chr2L_9_20375001 chr2L_20375001 RAL-646 209 chr2L 20568667 20568684 chr2L 20569057 20569071 X-element 4 389 1.0 2.0 1.5 1.6 404 chr2L 20568667 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-646 210 chr2L 20572965 20572994 chr2L 20573049 20573079 8 83 1.0 1.5 1.2 3.6 114 chr2L 20572965 intron CR45347 + chr2L 20573022 intron CR45347 + chr2L 20573079 intron CR45347 + chr2L_8_20570001 chr2L_20570001 RAL-646 211 chr2L 20576218 20576251 chr2L 20583685 20583719 blood 5 7468 2.0 1.5 1.8 1.8 7501 chr2L 20576218 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-646 212 chr2L 20589498 20589526 chr2L 20589575 20589602 8 76 0.0 3.5 1.8 2.9 104 chr2L 20589498 intron CR44909 - chr2L 20589550 intron CR44909 - chr2L 20589602 intron CR44909 - chr2L_8_20585001 chr2L_20585001 RAL-646 213 chr2L 20597092 20597117 chr2L 20597169 20597194 4 77 1.0 2.5 1.8 1.4 102 chr2L 20597092 intron CR44909 - chr2L 20597143 intron CR44909 - chr2L 20597194 intron CR44909 - chr2L_4_20595001 chr2L_20595001 RAL-646 214 chr2L 20607664 20607670 chr2L 20607715 20607715 5 57 4.0 1.0 2.5 1.4 51 chr2L 20607664 intron,3` UTR CR44909 -,CR43608 - chr2L 20607690 intron,3` UTR CR44909 -,CR43608 - chr2L 20607715 intron,3` UTR CR44909 -,CR43608 - chr2L_5_20605001 chr2L_20605001 RAL-646 215 chr2L 20807115 20807143 chr2L 20807197 20807226 4 83 3.5 2.5 3.0 1.0 111 chr2L 20807115 intron CG9328 + chr2L 20807170 intron CG9328 + chr2L 20807226 intron CG9328 + chr2L_4_20805001 chr2L_20805001 RAL-646 216 chr2L 20901472 20901484 chr2L 20902636 20902648 1360 5 1164 2.0 3.5 2.8 1.3 1176 chr2L 20901472 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902648 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-646 217 chr2L 20976645 20976669 chr2L 20981460 20981483 X-element 5 4814 0.5 2.0 1.2 2.3 4838 chr2L 20976645 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-646 218 chr2L 21020286 21020309 chr2L 21023963 21023985 NOF 11 3676 1.5 2.5 2.0 3.7 3699 chr2L 21020286 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-646 219 chr2L 21199231 21199258 chr2L 21199308 21199335 7 77 3.5 4.5 4.0 1.4 104 chr2L 21199231 intergenic CG31624 -,Ret - chr2L 21199283 3` UTR CG31624 - chr2L 21199335 3` UTR CG31624 - chr2L_7_21195001 chr2L_21195001 RAL-646 220 chr2L 21218977 21219007 chr2L 21219251 21219280 6 274 0.0 0.5 0.2 5.0 303 chr2L 21218977 intron Atg18b - chr2L 21219128 intron Atg18b - chr2L 21219280 intron Atg18b - chr2L_6_21215001 chr2L_21215001 RAL-646 221 chr2L 21246518 21246532 chr2L 21246606 21246627 5 88 3.5 1.5 2.5 1.4 109 chr2L 21246518 intron Hr39 + chr2L 21246572 intron Hr39 + chr2L 21246627 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-646 222 chr2L 21274265 21274282 chr2L 21274348 21274375 4 90 0.0 3.0 1.5 1.6 110 chr2L 21274265 exon CG8671 + chr2L 21274320 exon CG8671 + chr2L 21274375 exon CG8671 + chr2L_4_21270001 chr2L_21270001 RAL-646 223 chr2L 21333628 21333641 chr2L 21333773 21333786 4 145 2.5 1.5 2.0 1.3 158 chr2L 21333628 intron dimm + chr2L 21333707 intron dimm + chr2L 21333786 intron dimm + chr2L_4_21330001 chr2L_21330001 RAL-646 224 chr2L 21739125 21739150 chr2L 21742007 21742033 7 2882 15.0 17.0 16.0 0.4 2908 chr2L 21739125 intergenic not near genes chr2L 21740579 3` UTR step - chr2L 21742033 intron step - chr2L_7_21740001 chr2L_21740001 RAL-646 225 chr2L 21859316 21859344 chr2L 21859396 21859424 8 76 2.5 1.5 2.0 2.7 108 chr2L 21859316 intron CR44917 + chr2L 21859370 intron CR44917 + chr2L 21859424 intron CR44917 + chr2L_8_21855001 chr2L_21855001 RAL-646 226 chr2L 21981683 21981711 chr2L 21990848 21990876 roo 9 9165 3.0 2.5 2.8 2.4 9193 chr2L 21981683 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-646 227 chr2L 22011919 22011946 chr2L 22011997 22012027 7 80 0.5 1.5 1.0 3.5 108 chr2L 22011919 intergenic not near genes chr2L 22011973 intergenic not near genes chr2L 22012027 intergenic not near genes chr2L_7_22010001 chr2L_22010001 RAL-646 228 chr2L 22077307 22077315 chr2L 22077388 22077396 4 80 0.0 3.5 1.8 1.4 89 chr2L 22077307 intergenic not near genes chr2L 22077352 intergenic not near genes chr2L 22077396 intergenic not near genes chr2L_4_22075001 chr2L_22075001 RAL-646 229 chr2L 22719435 22719467 chr2L 22727558 22727590 gypsy2 5 8122 1.5 1.5 1.5 2.0 8155 chr2L 22719435 intron CG40006 - chr2L 22723512 intron CG40006 - chr2L 22727590 intron CG40006 - chr2L_5_22720001 chr2L_22720001 RAL-646 230 chr2L 22941247 22941281 chr2L 22941329 22941363 5 82 0.5 1.0 0.8 2.8 116 chr2L 22941247 3` UTR lt + chr2L 22941305 3` UTR lt + chr2L 22941363 3` UTR lt + chr2L_5_22940001 chr2L_22940001 RAL-646 231 chr2R 3293743 3293758 chr2R 3293821 3293831 4 74 3.5 1.0 2.2 1.2 88 chr2R 3293743 intergenic not near genes chr2R 3293787 intergenic not near genes chr2R 3293831 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-646 232 chr2R 4622953 4622982 chr2R 4624112 4624141 1360 10 1159 3.5 1.0 2.2 3.1 1188 chr2R 4622953 intergenic CR44101 - chr2R 4623547 intergenic not near genes chr2R 4624141 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-646 233 chr2R 4624641 4624666 chr2R 4626546 4626571 Bica 7 1905 3.5 1.5 2.5 2.0 1930 chr2R 4624641 intergenic not near genes chr2R 4625606 intergenic not near genes chr2R 4626571 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-646 234 chr2R 4656784 4656811 chr2R 4656888 4656915 11 102 3.0 7.0 5.0 1.8 131 chr2R 4656784 intergenic not near genes chr2R 4656850 intergenic not near genes chr2R 4656915 intergenic not near genes chr2R_11_4655001 chr2R_4655001 RAL-646 235 chr2R 4916104 4916135 chr2R 4916188 4916219 5 84 1.5 0.5 1.0 2.5 115 chr2R 4916104 intergenic not near genes chr2R 4916162 intergenic not near genes chr2R 4916219 intergenic not near genes chr2R_5_4915001 chr2R_4915001 RAL-646 236 chr2R 5240227 5240237 chr2R 5240303 5240313 4 76 5.5 4.5 5.0 0.7 86 chr2R 5240227 intron Nipped-A - chr2R 5240270 intron Nipped-A - chr2R 5240313 intron Nipped-A - chr2R_4_5240001 chr2R_5240001 RAL-646 237 chr2R 5396260 5396273 chr2R 5396498 5396510 4 238 8.5 9.5 9.0 0.4 250 chr2R 5396260 intergenic not near genes chr2R 5396385 intergenic not near genes chr2R 5396510 intergenic not near genes chr2R_4_5395001 chr2R_5395001 RAL-646 238 chr2R 5514969 5514991 chr2R 5515141 5515155 9 169 3.5 2.0 2.8 2.4 186 chr2R 5514969 intron CG30438 + chr2R 5515062 intron CG30438 + chr2R 5515155 intron CG30438 + chr2R_9_5515001 chr2R_5515001 RAL-646 239 chr2R 5664282 5664312 chr2R 5664360 5664392 11 76 2.5 2.0 2.2 3.4 110 chr2R 5664282 5` UTR CR45472 + chr2R 5664337 intron CR45472 + chr2R 5664392 intron CR45472 + chr2R_11_5660001 chr2R_5660001 RAL-646 240 chr2R 5859977 5860013 chr2R 5860089 5860124 7 111 1.5 1.5 1.5 2.8 147 chr2R 5859977 3` UTR dpr12 + chr2R 5860050 3` UTR dpr12 + chr2R 5860124 3` UTR dpr12 + chr2R_7_5860001 chr2R_5860001 RAL-646 241 chr2R 5869284 5869308 chr2R 5874354 5874384 flea 4 5074 2.5 2.0 2.2 1.2 5100 chr2R 5869284 intergenic not near genes chr2R 5871834 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-646 242 chr2R 5917770 5917803 chr2R 5917849 5917882 4 77 1.5 3.5 2.5 1.1 112 chr2R 5917770 intron CG43366 + chr2R 5917826 intron CG43366 + chr2R 5917882 intron CG43366 + chr2R_4_5915001 chr2R_5915001 RAL-646 243 chr2R 5932797 5932829 chr2R 5932873 5932896 4 75 1.0 1.0 1.0 2.0 99 chr2R 5932797 intergenic not near genes chr2R 5932846 intergenic not near genes chr2R 5932896 intergenic not near genes chr2R_4_5930001 chr2R_5930001 RAL-646 244 chr2R 5951199 5951204 chr2R 5951280 5951293 4 87 2.0 6.0 4.0 0.8 94 chr2R 5951199 intergenic not near genes chr2R 5951246 intergenic not near genes chr2R 5951293 intergenic not near genes chr2R_4_5950001 chr2R_5950001 RAL-646 245 chr2R 6129328 6129355 chr2R 6129406 6129432 5 78 0.0 1.5 0.8 2.8 104 chr2R 6129328 intron EcR - chr2R 6129380 intron EcR - chr2R 6129432 intron EcR - chr2R_5_6125001 chr2R_6125001 RAL-646 246 chr2R 6168194 6168223 chr2R 6168276 6168305 4 82 1.0 0.0 0.5 2.7 111 chr2R 6168194 intron EcR - chr2R 6168250 intron EcR - chr2R 6168305 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-646 247 chr2R 7153161 7153179 chr2R 7153247 7153260 5 83 9.0 2.5 5.8 0.7 99 chr2R 7153161 intron,intron pk +,Spn43Ab - chr2R 7153210 intron,intron pk +,Spn43Ab - chr2R 7153260 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-646 248 chr2R 7252497 7252523 chr2R 7253260 7253286 8 762 3.0 2.5 2.8 2.1 789 chr2R 7252497 intergenic not near genes chr2R 7252892 intergenic not near genes chr2R 7253286 intergenic not near genes chr2R_8_7250001 chr2R_7250001 RAL-646 249 chr2R 7389578 7389597 chr2R 7389680 7389693 4 100 2.0 0.5 1.2 1.8 115 chr2R 7389578 intron CG11107 + chr2R 7389636 intron CG11107 + chr2R 7389693 intron CG11107 + chr2R_4_7385001 chr2R_7385001 RAL-646 250 chr2R 7869195 7869211 chr2R 7873981 7873997 Doc 9 4786 2.5 5.0 3.8 1.9 4802 chr2R 7869195 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7873997 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-646 251 chr2R 7944791 7944812 chr2R 7944876 7944897 6 84 2.5 2.5 2.5 1.7 106 chr2R 7944791 intron CG14764 - chr2R 7944844 intron,exon CG14764 -,CG34431 + chr2R 7944897 intron,exon CG14764 -,CG34431 + chr2R_6_7940001 chr2R_7940001 RAL-646 252 chr2R 8006850 8006876 chr2R 8007009 8007035 5 155 0.5 0.5 0.5 3.3 185 chr2R 8006850 intergenic Odc1 +,Odc2 + chr2R 8006942 intergenic Odc1 +,Odc2 + chr2R 8007035 intergenic Odc2 +,Odc1 + chr2R_5_8005001 chr2R_8005001 RAL-646 253 chr2R 8015648 8015684 chr2R 8017671 8017702 4 2022 2.0 5.5 3.8 0.8 2054 chr2R 8015648 intergenic mir-4981 + chr2R 8016675 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-646 254 chr2R 8067064 8067098 chr2R 8067148 8067182 4 83 1.5 2.0 1.8 1.4 118 chr2R 8067064 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067182 exon CG17977 - chr2R_4_8065001 chr2R_8065001 RAL-646 255 chr2R 8076681 8076702 chr2R 8076761 8076782 4 80 3.5 0.5 2.0 1.3 101 chr2R 8076681 intron lig + chr2R 8076732 intron lig + chr2R 8076782 intron lig + chr2R_4_8075001 chr2R_8075001 RAL-646 256 chr2R 8089253 8089288 chr2R 8089339 8089374 8 85 1.0 1.0 1.0 4.0 121 chr2R 8089253 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089374 intergenic sut2 +,sut3 + chr2R_8_8085001 chr2R_8085001 RAL-646 257 chr2R 8160937 8160953 chr2R 8161026 8161043 1360 7 90 3.5 7.0 5.2 1.1 106 chr2R 8160937 intron CG8708 - chr2R 8160990 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_7_8160001 chr2R_8160001 RAL-646 258 chr2R 8330868 8330883 chr2R 8331353 8331368 roo 4 483 2.0 2.0 2.0 1.3 500 chr2R 8330868 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331368 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-646 259 chr2R 8353740 8353764 chr2R 8353843 8353862 7 103 1.5 3.0 2.2 2.2 122 chr2R 8353740 intron pdm3 + chr2R 8353801 intron pdm3 + chr2R 8353862 intron pdm3 + chr2R_7_8350001 chr2R_8350001 RAL-646 260 chr2R 8398222 8398241 chr2R 8403003 8403022 Doc 5 4781 5.5 6.0 5.8 0.7 4800 chr2R 8398222 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-646 261 chr2R 8483971 8483990 chr2R 8484047 8484066 4 76 0.5 1.0 0.8 2.2 95 chr2R 8483971 intron mtt - chr2R 8484018 intron mtt - chr2R 8484066 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-646 262 chr2R 8531917 8531950 chr2R 8532166 8532199 6 248 0.5 1.5 1.0 3.0 282 chr2R 8531917 5` UTR mtt - chr2R 8532058 5` UTR mtt - chr2R 8532199 5` UTR mtt - chr2R_6_8530001 chr2R_8530001 RAL-646 263 chr2R 8607933 8607964 chr2R 8608017 8608048 8 84 4.5 3.0 3.8 1.7 115 chr2R 8607933 intron rgr + chr2R 8607990 intron rgr + chr2R 8608048 intron rgr + chr2R_8_8605001 chr2R_8605001 RAL-646 264 chr2R 8622448 8622460 chr2R 8625912 8625936 5 3466 16.0 15.5 15.8 0.3 3488 chr2R 8622448 exon Cirl + chr2R 8624192 3` UTR Cirl + chr2R 8625936 exon Vps25 + chr2R_5_8620001 chr2R_8620001 RAL-646 265 chr2R 8658254 8658264 chr2R 8658329 8658337 4 75 1.5 4.5 3.0 1.0 83 chr2R 8658254 intron ptc + chr2R 8658296 intron ptc + chr2R 8658337 intron ptc + chr2R_4_8655001 chr2R_8655001 RAL-646 266 chr2R 8722763 8722790 chr2R 8723004 8723031 pogo 12 236 2.5 3.0 2.8 3.2 268 chr2R 8722763 intron CG14767 - chr2R 8722897 intron CG14767 - chr2R 8723031 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-646 267 chr2R 8789464 8789491 chr2R 8789550 8789580 8 83 2.5 3.5 3.0 2.0 116 chr2R 8789464 intergenic not near genes chr2R 8789522 intergenic not near genes chr2R 8789580 intergenic not near genes chr2R_8_8785001 chr2R_8785001 RAL-646 268 chr2R 9031977 9032002 chr2R 9032052 9032080 9 77 0.5 2.0 1.2 4.1 103 chr2R 9031977 intergenic not near genes chr2R 9032028 intergenic not near genes chr2R 9032080 intergenic not near genes chr2R_9_9030001 chr2R_9030001 RAL-646 269 chr2R 9212706 9212723 chr2R 9213185 9213195 roo 4 480 3.5 6.0 4.8 0.7 489 chr2R 9212706 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213195 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-646 270 chr2R 9368136 9368149 chr2R 9368203 9368224 6 72 3.5 0.0 1.8 2.1 88 chr2R 9368136 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368224 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-646 271 chr2R 9378109 9378143 chr2R 9378191 9378225 10 80 3.0 2.5 2.8 2.6 116 chr2R 9378109 intron CG13954 - chr2R 9378167 intron CG13954 - chr2R 9378225 intron CG13954 - chr2R_10_9375001 chr2R_9375001 RAL-646 272 chr2R 9392351 9392380 chr2R 9392438 9392454 10 83 1.5 3.0 2.2 3.1 103 chr2R 9392351 exon l(2)03659 + chr2R 9392402 exon l(2)03659 + chr2R 9392454 exon l(2)03659 + chr2R_10_9390001 chr2R_9390001 RAL-646 273 chr2R 9461239 9461254 chr2R 9461328 9461342 4 89 4.0 4.5 4.2 0.8 103 chr2R 9461239 intron Camta + chr2R 9461290 intron Camta + chr2R 9461342 intron Camta + chr2R_4_9460001 chr2R_9460001 RAL-646 274 chr2R 9676663 9676683 chr2R 9676770 9676772 6 104 3.5 1.0 2.2 1.9 109 chr2R 9676663 intron Mmp2 - chr2R 9676718 intron Mmp2 - chr2R 9676772 intron Mmp2 - chr2R_6_9675001 chr2R_9675001 RAL-646 275 chr2R 9806038 9806063 chr2R 9806117 9806146 9 81 1.0 2.5 1.8 3.2 108 chr2R 9806038 intron CG1688 - chr2R 9806092 intron CG1688 - chr2R 9806146 intron CG1688 - chr2R_9_9805001 chr2R_9805001 RAL-646 276 chr2R 9871039 9871068 chr2R 9871525 9871554 roo 5 486 2.0 4.0 3.0 1.2 515 chr2R 9871039 intron cbx - chr2R 9871296 intron cbx - chr2R 9871554 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-646 277 chr2R 9945436 9945469 chr2R 9945625 9945665 BS 10 194 2.5 1.0 1.8 3.6 229 chr2R 9945436 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_10_9945001 chr2R_9945001 RAL-646 278 chr2R 10017649 10017681 chr2R 10017727 10017759 4 78 0.5 1.0 0.8 2.2 110 chr2R 10017649 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017759 intron Pka-R2 - chr2R_4_10015001 chr2R_10015001 RAL-646 279 chr2R 10318527 10318544 chr2R 10318613 10318630 4 86 0.5 3.0 1.8 1.4 103 chr2R 10318527 intron Ndg + chr2R 10318578 intron Ndg + chr2R 10318630 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-646 280 chr2R 10400400 10400426 chr2R 10400477 10400486 10 76 3.0 5.0 4.0 2.0 86 chr2R 10400400 intron CG42732 - chr2R 10400443 intron CG42732 - chr2R 10400486 intron CG42732 - chr2R_10_10400001 chr2R_10400001 RAL-646 281 chr2R 10457308 10457324 chr2R 10457393 10457408 5 82 3.5 2.0 2.8 1.3 100 chr2R 10457308 intron,intron Galphao +,Cyp49a1 - chr2R 10457358 intron,intron Galphao +,Cyp49a1 - chr2R 10457408 intron,intron Galphao +,Cyp49a1 - chr2R_5_10455001 chr2R_10455001 RAL-646 282 chr2R 10937808 10937832 chr2R 10937946 10937970 6 138 0.5 3.5 2.0 2.0 162 chr2R 10937808 intergenic not near genes chr2R 10937889 intergenic not near genes chr2R 10937970 intergenic Spn47C - chr2R_6_10935001 chr2R_10935001 RAL-646 283 chr2R 10948026 10948055 chr2R 10955576 10955601 17.6 7 7546 2.0 2.0 2.0 2.3 7575 chr2R 10948026 intergenic not near genes chr2R 10951814 intergenic not near genes chr2R 10955601 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-646 284 chr2R 11009818 11009847 chr2R 11018990 11019006 roo 5 9170 1.0 4.0 2.5 1.4 9188 chr2R 11009818 intron luna - chr2R 11014412 intron luna - chr2R 11019006 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-646 285 chr2R 11263233 11263266 chr2R 11263311 11263331 13 73 1.0 0.0 0.5 8.7 98 chr2R 11263233 intergenic not near genes chr2R 11263282 intergenic not near genes chr2R 11263331 intergenic not near genes chr2R_13_11260001 chr2R_11260001 RAL-646 286 chr2R 11274313 11274329 chr2R 11274511 11274527 4 198 1.0 5.0 3.0 1.0 214 chr2R 11274313 intron TpnC47D - chr2R 11274420 intron TpnC47D - chr2R 11274527 intron TpnC47D - chr2R_4_11270001 chr2R_11270001 RAL-646 287 chr2R 11391243 11391276 chr2R 11391319 11391349 6 74 3.0 6.5 4.8 1.0 106 chr2R 11391243 intron sprt - chr2R 11391296 intron sprt - chr2R 11391349 intron sprt - chr2R_6_11390001 chr2R_11390001 RAL-646 288 chr2R 11494598 11494627 chr2R 11494685 11494709 10 85 2.5 3.0 2.8 2.6 111 chr2R 11494598 intron inv + chr2R 11494654 intron inv + chr2R 11494709 intron inv + chr2R_10_11490001 chr2R_11490001 RAL-646 289 chr2R 11861992 11862021 chr2R 11862077 11862106 4 84 0.0 1.0 0.5 2.7 114 chr2R 11861992 3` UTR CG34230 + chr2R 11862049 intergenic CG34230 +,TwdlBeta - chr2R 11862106 intergenic CG34230 +,TwdlBeta - chr2R_4_11860001 chr2R_11860001 RAL-646 290 chr2R 8518779 8518800 chr2R 12066173 12066201 6 3547396 5.0 10.5 7.8 0.7 3547422 chr2R 8518779 intron mtt - chr2R 10292490 intron CAP + chr2R 12066201 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-646 291 chr2R 12124829 12124861 chr2R 12124913 12124945 4 84 2.5 3.0 2.8 1.1 116 chr2R 12124829 intergenic not near genes chr2R 12124887 intergenic not near genes chr2R 12124945 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-646 292 chr2R 12187471 12187507 chr2R 12190087 12190123 31 2619 122.0 74.5 98.2 0.3 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_31_12185001 chr2R_12185001 RAL-646 293 chr2R 12217581 12217600 chr2R 12217662 12217668 4 78 1.5 2.0 1.8 1.4 87 chr2R 12217581 intergenic not near genes chr2R 12217624 intergenic not near genes chr2R 12217668 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-646 294 chr2R 12450415 12450439 chr2R 12450492 12450516 10 76 10.0 3.5 6.8 1.3 101 chr2R 12450415 intron Dyb + chr2R 12450466 intron Dyb + chr2R 12450516 intron Dyb + chr2R_10_12450001 chr2R_12450001 RAL-646 295 chr2R 12501704 12501718 chr2R 12503866 12503880 Rt1c 4 2160 5.5 4.5 5.0 0.7 2176 chr2R 12501704 intron fdl - chr2R 12502792 intron fdl - chr2R 12503880 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-646 296 chr2R 12695240 12695260 chr2R 12695326 12695346 6 85 3.5 0.5 2.0 2.0 106 chr2R 12695240 intergenic not near genes chr2R 12695293 intergenic not near genes chr2R 12695346 intergenic not near genes chr2R_6_12695001 chr2R_12695001 RAL-646 297 chr2R 12706423 12706446 chr2R 12706515 12706538 10 88 2.0 5.0 3.5 2.2 115 chr2R 12706423 intron CG42663 + chr2R 12706480 intron CG42663 + chr2R 12706538 intron CG42663 + chr2R_10_12705001 chr2R_12705001 RAL-646 298 chr2R 12726325 12726341 chr2R 12726417 12726418 9 89 3.0 1.0 2.0 3.0 93 chr2R 12726325 intron CG42663 + chr2R 12726372 intron CG42663 + chr2R 12726418 intron CG42663 + chr2R_9_12725001 chr2R_12725001 RAL-646 299 chr2R 12789300 12789328 chr2R 12797656 12797687 roo 5 8357 2.0 2.5 2.2 1.6 8387 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797687 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-646 300 chr2R 13136843 13136864 chr2R 13141641 13141662 Doc 7 4798 9.0 5.5 7.2 0.9 4819 chr2R 13136843 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-646 301 chr2R 13608273 13608302 chr2R 13608356 13608386 9 83 1.0 2.5 1.8 3.2 113 chr2R 13608273 intergenic CG12464 - chr2R 13608330 intergenic CG12464 - chr2R 13608386 intergenic CG12464 - chr2R_9_13605001 chr2R_13605001 RAL-646 302 chr2R 13768982 13768999 chr2R 13769081 13769095 4 98 5.0 3.0 4.0 0.8 113 chr2R 13768982 intergenic not near genes chr2R 13769038 intergenic not near genes chr2R 13769095 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-646 303 chr2R 13868902 13868923 chr2R 13868970 13869002 5 76 1.0 0.5 0.8 2.8 100 chr2R 13868902 intron shot - chr2R 13868952 intron shot - chr2R 13869002 intron shot - chr2R_5_13865001 chr2R_13865001 RAL-646 304 chr2R 13905603 13905634 chr2R 13907579 13907593 Rt1a 6 1973 0.5 4.0 2.2 1.9 1990 chr2R 13905603 intron shot - chr2R 13906598 intron shot - chr2R 13907593 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-646 305 chr2R 13914280 13914294 chr2R 13914371 13914385 6 89 1.5 2.0 1.8 2.1 105 chr2R 13914280 intron shot - chr2R 13914332 intron shot - chr2R 13914385 intron shot - chr2R_6_13910001 chr2R_13910001 RAL-646 306 chr2R 13925850 13925870 chr2R 13926026 13926046 4 176 2.0 1.0 1.5 1.6 196 chr2R 13925850 intron shot - chr2R 13925948 intron shot - chr2R 13926046 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-646 307 chr2R 14266763 14266794 chr2R 14266839 14266870 8 73 2.0 4.0 3.0 2.0 107 chr2R 14266763 intron CG8547 - chr2R 14266816 intron CG8547 - chr2R 14266870 intron CG8547 - chr2R_8_14265001 chr2R_14265001 RAL-646 308 chr2R 14342227 14342243 chr2R 14342301 14342319 4 75 3.5 4.5 4.0 0.8 92 chr2R 14342227 intron Shroom + chr2R 14342273 intron Shroom + chr2R 14342319 intron Shroom + chr2R_4_14340001 chr2R_14340001 RAL-646 309 chr2R 14393864 14393893 chr2R 14393949 14393978 9 84 3.5 3.5 3.5 2.0 114 chr2R 14393864 intergenic not near genes chr2R 14393921 intergenic not near genes chr2R 14393978 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-646 310 chr2R 14521708 14521734 chr2R 14522055 14522081 5 346 0.5 0.5 0.5 3.3 373 chr2R 14521708 intergenic not near genes chr2R 14521894 intergenic not near genes chr2R 14522081 intergenic not near genes chr2R_5_14520001 chr2R_14520001 RAL-646 311 chr2R 14538962 14538989 chr2R 14539037 14539060 4 74 6.5 4.0 5.2 0.6 98 chr2R 14538962 intron ttv + chr2R 14539011 intron ttv + chr2R 14539060 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-646 312 chr2R 14728202 14728208 chr2R 14728281 14728287 4 78 2.0 2.0 2.0 1.3 85 chr2R 14728202 intergenic not near genes chr2R 14728244 intergenic not near genes chr2R 14728287 intergenic not near genes chr2R_4_14725001 chr2R_14725001 RAL-646 313 chr2R 14911705 14911725 chr2R 14911828 14911848 7 123 0.5 3.5 2.0 2.3 143 chr2R 14911705 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_7_14910001 chr2R_14910001 RAL-646 314 chr2R 14922141 14922174 chr2R 14922217 14922242 7 74 1.0 3.0 2.0 2.3 101 chr2R 14922141 intron CG10249 - chr2R 14922192 intron CG10249 - chr2R 14922242 intron CG10249 - chr2R_7_14920001 chr2R_14920001 RAL-646 315 chr2R 14955208 14955230 chr2R 14955358 14955379 6 150 3.0 2.5 2.8 1.6 171 chr2R 14955208 intron aPKC - chr2R 14955294 intron aPKC - chr2R 14955379 intron aPKC - chr2R_6_14955001 chr2R_14955001 RAL-646 316 chr2R 14979768 14979788 chr2R 14979844 14979864 4 76 3.5 0.5 2.0 1.3 96 chr2R 14979768 3` UTR ckn + chr2R 14979816 3` UTR ckn + chr2R 14979864 3` UTR ckn + chr2R_4_14975001 chr2R_14975001 RAL-646 317 chr2R 15004725 15004754 chr2R 15005054 15005083 jockey 5 328 1.5 0.5 1.0 2.5 358 chr2R 15004725 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005083 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-646 318 chr2R 15015457 15015489 chr2R 15022881 15022912 mdg1 13 7423 1.5 2.5 2.0 4.3 7455 chr2R 15015457 intron hbs + chr2R 15019184 intron hbs + chr2R 15022912 intron hbs + chr2R_13_15015001 chr2R_15015001 RAL-646 319 chr2R 15065616 15065650 chr2R 15065692 15065728 10 72 1.5 4.5 3.0 2.5 112 chr2R 15065616 intergenic not near genes chr2R 15065672 intergenic not near genes chr2R 15065728 intergenic not near genes chr2R_10_15065001 chr2R_15065001 RAL-646 320 chr2R 15119316 15119348 chr2R 15127797 15127817 Tirant 5 8477 1.5 2.0 1.8 1.8 8501 chr2R 15119316 intron chn + chr2R 15123566 intron chn + chr2R 15127817 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-646 321 chr2R 15133485 15133514 chr2R 15133564 15133591 4 78 1.5 3.5 2.5 1.1 106 chr2R 15133485 intron chn + chr2R 15133538 intron chn + chr2R 15133591 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-646 322 chr2R 15697894 15697920 chr2R 15697975 15698001 7 81 1.0 0.0 0.5 4.7 107 chr2R 15697894 exon CG33462 + chr2R 15697948 3` UTR CG33462 + chr2R 15698001 3` UTR CG33462 + chr2R_7_15695001 chr2R_15695001 RAL-646 323 chr2R 15794892 15794897 chr2R 15794982 15794987 4 90 0.0 0.0 0.0 4.0 95 chr2R 15794892 intron,5` UTR Zasp52 -,tun + chr2R 15794940 intron,5` UTR Zasp52 -,tun + chr2R 15794987 intron,intron Zasp52 -,tun + chr2R_4_15790001 chr2R_15790001 RAL-646 324 chr2R 15904421 15904439 chr2R 15904498 15904516 9 77 1.5 4.0 2.8 2.4 95 chr2R 15904421 intron sli - chr2R 15904468 intron sli - chr2R 15904516 intron sli - chr2R_9_15900001 chr2R_15900001 RAL-646 325 chr2R 16380774 16380797 chr2R 16380850 16380875 10 76 0.0 0.5 0.2 8.3 101 chr2R 16380774 intron CG43187 + chr2R 16380824 intron CG43187 + chr2R 16380875 exon CG43187 + chr2R_10_16380001 chr2R_16380001 RAL-646 326 chr2R 16387510 16387536 chr2R 16387990 16388016 4 480 2.5 1.0 1.8 1.4 506 chr2R 16387510 intron Sema-2b + chr2R 16387763 intron Sema-2b + chr2R 16388016 intron Sema-2b + chr2R_4_16385001 chr2R_16385001 RAL-646 327 chr2R 16601529 16601547 chr2R 16601637 16601658 5 110 3.0 1.5 2.2 1.6 129 chr2R 16601529 intron CG8303 - chr2R 16601594 intron CG8303 - chr2R 16601658 intron CG8303 - chr2R_5_16600001 chr2R_16600001 RAL-646 328 chr2R 16617077 16617089 chr2R 16617156 16617168 4 79 0.0 3.0 1.5 1.6 91 chr2R 16617077 intron CG5065 + chr2R 16617122 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-646 329 chr2R 16708996 16709019 chr2R 16709092 16709115 5 96 2.5 2.0 2.2 1.6 119 chr2R 16708996 intron CG30463 - chr2R 16709056 intron CG30463 - chr2R 16709115 intron CG30463 - chr2R_5_16705001 chr2R_16705001 RAL-646 330 chr2R 16918096 16918125 chr2R 16918574 16918603 4 478 2.0 0.5 1.2 1.8 507 chr2R 16918096 intergenic not near genes chr2R 16918350 intergenic not near genes chr2R 16918603 intergenic not near genes chr2R_4_16915001 chr2R_16915001 RAL-646 331 chr2R 17090735 17090747 chr2R 17090824 17090836 4 89 2.0 0.5 1.2 1.8 101 chr2R 17090735 intron Sply - chr2R 17090786 intron Sply - chr2R 17090836 intron Sply - chr2R_4_17090001 chr2R_17090001 RAL-646 332 chr2R 17147245 17147261 chr2R 17152273 17152292 jockey 8 5030 2.5 4.0 3.2 1.9 5047 chr2R 17147245 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152292 intergenic not near genes chr2R_8_17145001 chr2R_17145001 RAL-646 333 chr2R 17194245 17194268 chr2R 17195049 17195071 5 804 3.5 0.5 2.0 1.7 826 chr2R 17194245 intergenic not near genes chr2R 17194658 intergenic not near genes chr2R 17195071 intergenic CG10950 + chr2R_5_17190001 chr2R_17190001 RAL-646 334 chr2R 17236510 17236524 chr2R 17241714 17241728 copia 5 5204 3.0 3.5 3.2 1.2 5218 chr2R 17236510 intron mbl + chr2R 17239119 intron mbl + chr2R 17241728 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-646 335 chr2R 17345474 17345501 chr2R 17345557 17345580 5 82 2.0 1.5 1.8 1.8 106 chr2R 17345474 intron mbl + chr2R 17345527 intron mbl + chr2R 17345580 intron mbl + chr2R_5_17345001 chr2R_17345001 RAL-646 336 chr2R 17459014 17459029 chr2R 17459099 17459114 4 82 4.5 1.0 2.8 1.1 100 chr2R 17459014 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459114 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-646 337 chr2R 17784053 17784057 chr2R 17784282 17784298 pogo 4 238 0.0 7.0 3.5 0.9 245 chr2R 17784053 intergenic mir-31a - chr2R 17784176 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-646 338 chr2R 17835030 17835063 chr2R 17835124 17835157 7 89 3.0 2.0 2.5 2.0 127 chr2R 17835030 intron grh + chr2R 17835094 intron grh + chr2R 17835157 intron grh + chr2R_7_17835001 chr2R_17835001 RAL-646 339 chr2R 17934140 17934158 chr2R 17934245 17934263 6 102 3.0 1.5 2.2 1.9 123 chr2R 17934140 intergenic not near genes chr2R 17934202 intergenic not near genes chr2R 17934263 intergenic not near genes chr2R_6_17930001 chr2R_17930001 RAL-646 340 chr2R 17937519 17937551 chr2R 17937599 17937631 13 78 2.0 1.0 1.5 5.2 112 chr2R 17937519 intergenic not near genes chr2R 17937575 intergenic not near genes chr2R 17937631 intergenic not near genes chr2R_13_17935001 chr2R_17935001 RAL-646 341 chr2R 17982928 17982944 chr2R 17983012 17983026 5 84 0.5 3.0 1.8 1.8 98 chr2R 17982928 intron dpr13 - chr2R 17982977 intron dpr13 - chr2R 17983026 intron dpr13 - chr2R_5_17980001 chr2R_17980001 RAL-646 342 chr2R 18358404 18358421 chr2R 18372615 18372633 roo 6 14212 1.0 3.0 2.0 2.0 14229 chr2R 18358404 intergenic not near genes chr2R 18365518 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-646 343 chr2R 18486858 18486878 chr2R 18487115 18487130 5 258 2.0 2.5 2.2 1.6 272 chr2R 18486858 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487130 intron CG30116 - chr2R_5_18485001 chr2R_18485001 RAL-646 344 chr2R 18590875 18590899 chr2R 18600020 18600043 roo 8 9148 2.0 1.5 1.8 2.9 9168 chr2R 18590875 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600043 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-646 345 chr2R 18692906 18692920 chr2R 18692992 18693006 4 86 2.5 1.0 1.8 1.4 100 chr2R 18692906 intron Sik3 + chr2R 18692956 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-646 346 chr2R 18713236 18713273 chr2R 18713313 18713350 7 77 2.0 0.5 1.2 3.2 114 chr2R 18713236 intergenic not near genes chr2R 18713293 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_7_18710001 chr2R_18710001 RAL-646 347 chr2R 18863329 18863350 chr2R 18863411 18863426 5 80 1.0 3.5 2.2 1.6 97 chr2R 18863329 intergenic CG43069 + chr2R 18863378 intergenic CG43069 + chr2R 18863426 intergenic CG43069 +,CG43070 + chr2R_5_18860001 chr2R_18860001 RAL-646 348 chr2R 19420033 19420033 chr2R 19420086 19420109 4 70 1.5 0.5 1.0 2.0 76 chr2R 19420033 intron hts - chr2R 19420071 intron hts - chr2R 19420109 intron hts - chr2R_4_19420001 chr2R_19420001 RAL-646 349 chr2R 19641782 19641804 chr2R 19641886 19641908 4 104 1.0 2.5 1.8 1.4 126 chr2R 19641782 intergenic not near genes chr2R 19641845 intergenic not near genes chr2R 19641908 intergenic not near genes chr2R_4_19640001 chr2R_19640001 RAL-646 350 chr2R 19821178 19821207 chr2R 19821268 19821298 5 86 4.0 3.5 3.8 1.0 120 chr2R 19821178 intergenic not near genes chr2R 19821238 intergenic not near genes chr2R 19821298 intergenic not near genes chr2R_5_19820001 chr2R_19820001 RAL-646 351 chr2R 19914849 19914877 chr2R 19922261 19922267 mdg1 5 7408 0.5 3.5 2.0 1.7 7418 chr2R 19914849 intergenic not near genes chr2R 19918558 intergenic not near genes chr2R 19922267 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-646 352 chr2R 19957439 19957461 chr2R 19962640 19962663 copia 7 5197 2.5 6.5 4.5 1.3 5224 chr2R 19957439 intergenic CG44623 + chr2R 19960051 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-646 353 chr2R 20118875 20118905 chr2R 20118963 20118992 5 87 0.5 1.0 0.8 2.8 117 chr2R 20118875 intergenic not near genes chr2R 20118934 intergenic not near genes chr2R 20118992 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-646 354 chr2R 20408532 20408550 chr2R 20408593 20408627 8 73 2.5 2.5 2.5 2.3 95 chr2R 20408532 intergenic not near genes chr2R 20408580 intergenic not near genes chr2R 20408627 intergenic not near genes chr2R_8_20405001 chr2R_20405001 RAL-646 355 chr2R 20523047 20523069 chr2R 20523155 20523179 7 109 2.5 6.0 4.2 1.3 132 chr2R 20523047 intergenic not near genes chr2R 20523113 intergenic not near genes chr2R 20523179 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-646 356 chr2R 20601718 20601751 chr2R 20601803 20601836 6 82 0.5 1.0 0.8 3.3 118 chr2R 20601718 intron bl + chr2R 20601777 intron bl + chr2R 20601836 intron bl + chr2R_6_20600001 chr2R_20600001 RAL-646 357 chr2R 20673565 20673582 chr2R 20673938 20673963 6 380 1.0 3.5 2.2 1.9 398 chr2R 20673565 intergenic CG30152 + chr2R 20673764 intergenic CG30152 + chr2R 20673963 intergenic CG30152 + chr2R_6_20670001 chr2R_20670001 RAL-646 358 chr2R 20739444 20739477 chr2R 20744212 20744245 F-element 4 4768 2.5 3.5 3.0 1.0 4801 chr2R 20739444 intron dpr + chr2R 20741844 intron dpr + chr2R 20744245 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-646 359 chr2R 20783318 20783333 chr2R 20788089 20788105 F-element 6 4772 2.5 2.0 2.2 1.9 4787 chr2R 20783318 intergenic not near genes chr2R 20785712 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-646 360 chr2R 21082125 21082141 chr2R 21082542 21082558 5 417 3.0 1.0 2.0 1.7 433 chr2R 21082125 intron Treh + chr2R 21082342 intron Treh + chr2R 21082558 intron Treh + chr2R_5_21080001 chr2R_21080001 RAL-646 361 chr2R 21141120 21141144 chr2R 21141216 21141240 4 93 0.0 0.5 0.2 3.3 120 chr2R 21141120 intron Magi - chr2R 21141180 intron Magi - chr2R 21141240 intron Magi - chr2R_4_21140001 chr2R_21140001 RAL-646 362 chr2R 21232647 21232657 chr2R 21232816 21232827 4 170 5.5 0.0 2.8 1.1 180 chr2R 21232647 intron ASPP - chr2R 21232737 intron ASPP - chr2R 21232827 intron ASPP - chr2R_4_21230001 chr2R_21230001 RAL-646 363 chr2R 21505765 21505796 chr2R 21505846 21505877 7 77 1.0 2.0 1.5 2.8 112 chr2R 21505765 intron MESK2 + chr2R 21505821 intron MESK2 + chr2R 21505877 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-646 364 chr2R 21546787 21546802 chr2R 21546868 21546879 4 77 2.5 1.0 1.8 1.4 92 chr2R 21546787 intron Egfr + chr2R 21546833 intron Egfr + chr2R 21546879 intron Egfr + chr2R_4_21545001 chr2R_21545001 RAL-646 365 chr2R 21566420 21566445 chr2R 21566516 21566543 7 92 3.0 3.5 3.2 1.7 123 chr2R 21566420 intron CG10440 - chr2R 21566482 intron CG10440 - chr2R 21566543 intron CG10440 - chr2R_7_21565001 chr2R_21565001 RAL-646 366 chr2R 21612356 21612379 chr2R 21612439 21612466 4 86 1.5 0.0 0.8 2.2 110 chr2R 21612356 intron CG15673 - chr2R 21612411 intron CG15673 - chr2R 21612466 intron CG15673 - chr2R_4_21610001 chr2R_21610001 RAL-646 367 chr2R 21738279 21738299 chr2R 21747437 21747448 roo 4 9156 2.0 1.0 1.5 1.6 9169 chr2R 21738279 intergenic not near genes chr2R 21742864 intergenic not near genes chr2R 21747448 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-646 368 chr2R 21749100 21749127 chr2R 21749185 21749212 7 82 1.5 2.5 2.0 2.3 112 chr2R 21749100 intergenic not near genes chr2R 21749156 intergenic not near genes chr2R 21749212 intergenic not near genes chr2R_7_21745001 chr2R_21745001 RAL-646 369 chr2R 21753086 21753115 chr2R 21753571 21753585 roo 5 479 3.5 3.5 3.5 1.1 499 chr2R 21753086 intergenic not near genes chr2R 21753336 intergenic not near genes chr2R 21753585 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-646 370 chr2R 21857351 21857369 chr2R 21857436 21857450 7 86 4.5 1.5 3.0 1.8 99 chr2R 21857351 intergenic not near genes chr2R 21857400 intergenic not near genes chr2R 21857450 intergenic not near genes chr2R_7_21855001 chr2R_21855001 RAL-646 371 chr2R 22072681 22072714 chr2R 22072766 22072799 8 80 0.5 1.0 0.8 4.4 118 chr2R 22072681 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072799 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-646 372 chr2R 22091862 22091890 chr2R 22091945 22091970 7 81 3.0 4.5 3.8 1.5 108 chr2R 22091862 exon CG11073 - chr2R 22091916 exon CG11073 - chr2R 22091970 exon CG11073 - chr2R_7_22090001 chr2R_22090001 RAL-646 373 chr2R 22349697 22349722 chr2R 22351480 22351487 jockey 4 1779 2.0 4.0 3.0 1.0 1790 chr2R 22349697 intron Liprin-gamma - chr2R 22350592 intron Liprin-gamma - chr2R 22351487 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-646 374 chr2R 22460382 22460406 chr2R 22460460 22460485 7 76 1.0 2.5 1.8 2.5 103 chr2R 22460382 intron CG10384 + chr2R 22460434 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_7_22460001 chr2R_22460001 RAL-646 375 chr2R 22499850 22499884 chr2R 22499926 22499960 4 76 0.0 3.0 1.5 1.6 110 chr2R 22499850 intron px - chr2R 22499905 intron px - chr2R 22499960 intron px - chr2R_4_22495001 chr2R_22495001 RAL-646 376 chr2R 22654393 22654398 chr2R 22654474 22654478 6 80 0.5 8.5 4.5 1.1 85 chr2R 22654393 exon Cyp6d2 - chr2R 22654436 5` UTR Cyp6d2 - chr2R 22654478 5` UTR Cyp6d2 - chr2R_6_22650001 chr2R_22650001 RAL-646 377 chr2R 22679748 22679783 chr2R 22679824 22679847 14 72 1.5 4.0 2.8 3.7 99 chr2R 22679748 intergenic not near genes chr2R 22679798 intergenic not near genes chr2R 22679847 intergenic not near genes chr2R_14_22675001 chr2R_22675001 RAL-646 378 chr2R 22834767 22834797 chr2R 22834880 22834909 4 112 0.0 0.0 0.0 4.0 142 chr2R 22834767 intron CG12490 + chr2R 22834838 intron CG12490 + chr2R 22834909 intron CG12490 + chr2R_4_22830001 chr2R_22830001 RAL-646 379 chr2R 22907407 22907427 chr2R 22907497 22907520 6 92 3.5 3.0 3.2 1.4 113 chr2R 22907407 intron nahoda + chr2R 22907464 intron nahoda + chr2R 22907520 intron nahoda + chr2R_6_22905001 chr2R_22905001 RAL-646 380 chr2R 22907430 22907436 chr2R 22907496 22907527 4 77 2.5 2.5 2.5 1.1 97 chr2R 22907430 intron nahoda + chr2R 22907478 intron nahoda + chr2R 22907527 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-646 381 chr2R 23158174 23158186 chr2R 23158259 23158270 4 85 6.5 4.0 5.2 0.6 96 chr2R 23158174 intron,5` UTR CG9899 +,CG13545 - chr2R 23158222 intron CG9899 + chr2R 23158270 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-646 382 chr2R 23186101 23186121 chr2R 23186246 23186266 5 145 0.5 1.5 1.0 2.5 165 chr2R 23186101 intron CG34371 - chr2R 23186184 intron CG34371 - chr2R 23186266 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-646 383 chr2R 23914321 23914332 chr2R 23921945 23921956 412 7 7623 2.5 3.5 3.0 1.8 7635 chr2R 23914321 exon kcc + chr2R 23918138 intron kcc + chr2R 23921956 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-646 384 chr2R 24031397 24031411 chr2R 24031472 24031495 4 82 0.0 0.0 0.0 4.0 98 chr2R 24031397 5` UTR CG30172 - chr2R 24031446 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_4_24030001 chr2R_24030001 RAL-646 385 chr2R 24147066 24147094 chr2R 24154644 24154672 412 8 7578 3.0 2.5 2.8 2.1 7606 chr2R 24147066 intron Dat + chr2R 24150869 intron Dat + chr2R 24154672 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-646 386 chr2R 24177247 24177260 chr2R 24184721 24184721 412 4 7476 1.0 1.5 1.2 1.8 7474 chr2R 24177247 3` UTR Nop60B + chr2R 24180984 intron Nop60B + chr2R 24184721 intron Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-646 387 chr2R 24351425 24351429 chr2R 24351506 24351510 4 81 1.0 3.0 2.0 1.3 85 chr2R 24351425 intron bs + chr2R 24351468 intron bs + chr2R 24351510 intron,3` UTR bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-646 388 chr2R 24353428 24353451 chr2R 24361789 24361798 roo 7 8357 0.5 2.5 1.5 2.8 8370 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357613 intron,intron bs +,CR44811 - chr2R 24361798 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-646 389 chr2R 24444028 24444056 chr2R 24444138 24444147 13 106 2.0 2.5 2.2 4.1 119 chr2R 24444028 intergenic not near genes chr2R 24444088 intergenic not near genes chr2R 24444147 intergenic not near genes chr2R_13_24440001 chr2R_24440001 RAL-646 390 chr2R 24509310 24509338 chr2R 24509393 24509423 5 84 4.0 2.5 3.2 1.2 113 chr2R 24509310 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509423 intergenic Letm1 - chr2R_5_24505001 chr2R_24505001 RAL-646 391 chr2R 24590110 24590145 chr2R 24590202 24590237 14 91 3.5 1.5 2.5 4.0 127 chr2R 24590110 intron pio + chr2R 24590174 intron pio + chr2R 24590237 intron pio + chr2R_14_24590001 chr2R_24590001 RAL-646 392 chr2R 24634003 24634024 chr2R 24634073 24634077 9 74 2.5 2.0 2.2 2.8 74 chr2R 24634003 intron CG13594 - chr2R 24634040 intron CG13594 - chr2R 24634077 intron CG13594 - chr2R_9_24630001 chr2R_24630001 RAL-646 393 chr2R 24727884 24727918 chr2R 24735392 24735426 mdg1 13 7505 1.5 2.0 1.8 4.6 7542 chr2R 24727884 intron Mid1 - chr2R 24731655 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-646 394 chr2R 24763608 24763643 chr2R 24765584 24765594 G2 11 1973 2.0 4.0 3.0 2.8 1986 chr2R 24763608 exon CG3894 + chr2R 24764601 intron CG3894 + chr2R 24765594 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-646 395 chr2R 24859844 24859864 chr2R 24859929 24859950 5 85 2.0 1.0 1.5 2.0 106 chr2R 24859844 5` UTR CR44829 + chr2R 24859897 5` UTR CR44829 + chr2R 24859950 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-646 396 chr2R 24884053 24884073 chr2R 24884135 24884155 6 82 0.5 1.5 1.0 3.0 102 chr2R 24884053 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884155 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-646 397 chr2R 25081612 25081623 chr2R 25082706 25082711 6 1092 2.5 5.0 3.8 1.2 1099 chr2R 25081612 intron gol - chr2R 25082162 intron gol - chr2R 25082711 intron gol - chr2R_6_25080001 chr2R_25080001 RAL-646 398 chr2R 25101280 25101286 chr2R 25101382 25101388 4 102 2.5 2.0 2.2 1.2 108 chr2R 25101280 intron lov - chr2R 25101334 intron lov - chr2R 25101388 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-646 399 chr3L 51394 51418 chr3L 51486 51516 6 95 2.5 4.5 3.5 1.3 122 chr3L 51394 intergenic not near genes chr3L 51455 intergenic not near genes chr3L 51516 intergenic not near genes chr3L_6_50001 chr3L_50001 RAL-646 400 chr3L 160233 160258 chr3L 160335 160360 10 102 2.5 2.5 2.5 2.9 127 chr3L 160233 intron p130CAS + chr3L 160296 intron p130CAS + chr3L 160360 intron p130CAS + chr3L_10_160001 chr3L_160001 RAL-646 401 chr3L 296283 296313 chr3L 296365 296395 7 82 1.5 1.0 1.2 3.2 112 chr3L 296283 intron RhoGEF3 + chr3L 296339 intron RhoGEF3 + chr3L 296395 intron RhoGEF3 + chr3L_7_295001 chr3L_295001 RAL-646 402 chr3L 402690 402715 chr3L 409743 409768 297 9 7051 4.5 4.5 4.5 1.6 7078 chr3L 402690 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409768 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-646 403 chr3L 421049 421078 chr3L 421145 421173 7 95 2.5 4.5 3.5 1.6 124 chr3L 421049 intergenic not near genes chr3L 421111 intergenic not near genes chr3L 421173 intergenic not near genes chr3L_7_420001 chr3L_420001 RAL-646 404 chr3L 456223 456236 chr3L 456285 456315 4 75 2.5 1.0 1.8 1.4 92 chr3L 456223 intron klar - chr3L 456269 intron klar - chr3L 456315 intron klar - chr3L_4_455001 chr3L_455001 RAL-646 405 chr3L 651386 651419 chr3L 651474 651507 7 84 1.5 0.0 0.8 3.9 121 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651446 intergenic CG3402 -,Gale + chr3L 651507 intergenic CG3402 -,Gale + chr3L_7_650001 chr3L_650001 RAL-646 406 chr3L 732821 732845 chr3L 733043 733044 5 215 1.5 0.0 0.8 2.8 223 chr3L 732821 intergenic not near genes chr3L 732932 intergenic not near genes chr3L 733044 intergenic not near genes chr3L_5_730001 chr3L_730001 RAL-646 407 chr3L 759825 759848 chr3L 760005 760025 10 178 2.0 11.5 6.8 1.3 200 chr3L 759825 intergenic not near genes chr3L 759925 intergenic not near genes chr3L 760025 intergenic not near genes chr3L_10_755001 chr3L_755001 RAL-646 408 chr3L 789913 789943 chr3L 790398 790412 roo 5 481 0.5 1.5 1.0 2.5 499 chr3L 789913 intergenic not near genes chr3L 790162 intergenic not near genes chr3L 790412 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-646 409 chr3L 858001 858030 chr3L 866480 866491 Tirant 5 8473 2.5 2.0 2.2 1.6 8490 chr3L 858001 intergenic not near genes chr3L 862246 intergenic not near genes chr3L 866491 intergenic CG12502 + chr3L_5_860001 chr3L_860001 RAL-646 410 chr3L 884018 884043 chr3L 884166 884192 7 149 1.5 3.5 2.5 2.0 174 chr3L 884018 intron CG32479 + chr3L 884105 intron CG32479 + chr3L 884192 intron CG32479 + chr3L_7_880001 chr3L_880001 RAL-646 411 chr3L 933918 933942 chr3L 934021 934045 5 103 1.0 3.5 2.2 1.6 127 chr3L 933918 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-646 412 chr3L 1104003 1104010 chr3L 1104194 1104201 4 191 1.5 5.5 3.5 0.9 198 chr3L 1104003 intergenic not near genes chr3L 1104102 intergenic not near genes chr3L 1104201 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-646 413 chr3L 1109637 1109662 chr3L 1109725 1109750 5 87 2.0 2.5 2.2 1.6 113 chr3L 1109637 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109750 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-646 414 chr3L 1268152 1268167 chr3L 1268339 1268351 4 186 1.5 0.0 0.8 2.2 199 chr3L 1268152 intron CG9134 + chr3L 1268252 intron CG9134 + chr3L 1268351 intron CG9134 + chr3L_4_1265001 chr3L_1265001 RAL-646 415 chr3L 1310982 1311011 chr3L 1315843 1315871 9 4861 27.0 26.5 26.8 0.3 4889 chr3L 1310982 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315871 exon CG9153 + chr3L_9_1310001 chr3L_1310001 RAL-646 416 chr3L 1463475 1463486 chr3L 1463556 1463567 4 81 7.0 5.5 6.2 0.6 92 chr3L 1463475 intron Ptp61F - chr3L 1463521 intron Ptp61F - chr3L 1463567 intron Ptp61F - chr3L_4_1460001 chr3L_1460001 RAL-646 417 chr3L 1463490 1463499 chr3L 1463546 1463578 4 62 4.5 2.5 3.5 0.9 88 chr3L 1463490 intron Ptp61F - chr3L 1463534 intron Ptp61F - chr3L 1463578 intron Ptp61F - chr3L_4_1460001 chr3L_1460001 RAL-646 418 chr3L 1506007 1506030 chr3L 1513604 1513627 17.6 7 7596 0.0 4.0 2.0 2.3 7620 chr3L 1506007 intron,intron Psa +,cue - chr3L 1509817 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-646 419 chr3L 1571242 1571492 chr3L 1571323 1571577 6 82 0.5 1.5 1.0 3.0 335 chr3L 1571242 intron CG12004 + chr3L 1571410 intron CG12004 + chr3L 1571577 intron CG12004 + chr3L_6_1570001 chr3L_1570001 RAL-646 420 chr3L 1809263 1809279 chr3L 1809348 1809364 4 85 3.0 2.5 2.8 1.1 101 chr3L 1809263 intergenic not near genes chr3L 1809314 intergenic not near genes chr3L 1809364 intergenic not near genes chr3L_4_1805001 chr3L_1805001 RAL-646 421 chr3L 2168772 2168793 chr3L 2168863 2168884 5 91 2.5 2.5 2.5 1.4 112 chr3L 2168772 exon CG15879 - chr3L 2168828 intron CG15879 - chr3L 2168884 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-646 422 chr3L 2308004 2308032 chr3L 2308110 2308120 7 101 1.5 2.0 1.8 2.5 116 chr3L 2308004 intergenic not near genes chr3L 2308062 intergenic not near genes chr3L 2308120 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-646 423 chr3L 2321173 2321189 chr3L 2321245 2321251 7 73 3.0 3.0 3.0 1.8 78 chr3L 2321173 intergenic not near genes chr3L 2321212 intergenic not near genes chr3L 2321251 intergenic not near genes chr3L_7_2320001 chr3L_2320001 RAL-646 424 chr3L 2447510 2447534 chr3L 2456666 2456690 roo 10 9152 2.0 3.0 2.5 2.9 9180 chr3L 2447510 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456690 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-646 425 chr3L 2478879 2479035 chr3L 2478959 2479132 12 93 1.5 1.5 1.5 4.8 253 chr3L 2478879 intron CG45186 + chr3L 2479006 intron CG45186 + chr3L 2479132 intron CG45186 + chr3L_12_2475001 chr3L_2475001 RAL-646 426 chr3L 2485586 2485621 chr3L 2485664 2485699 6 73 0.5 1.5 1.0 3.0 113 chr3L 2485586 intron CG45186 + chr3L 2485642 intron CG45186 + chr3L 2485699 intron CG45186 + chr3L_6_2485001 chr3L_2485001 RAL-646 427 chr3L 2533649 2533678 chr3L 2533731 2533745 5 73 2.5 2.0 2.2 1.6 96 chr3L 2533649 intron Spn - chr3L 2533697 intron Spn - chr3L 2533745 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-646 428 chr3L 2927838 2927858 chr3L 2936115 2936135 Tirant 6 8277 2.5 2.5 2.5 1.7 8297 chr3L 2927838 intron Shab + chr3L 2931986 intron Shab + chr3L 2936135 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-646 429 chr3L 3281454 3281459 chr3L 3281944 3281955 Doc 4 492 4.5 5.5 5.0 0.7 501 chr3L 3281454 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281955 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-646 430 chr3L 3281460 3281462 chr3L 3281941 3281957 Doc 4 492 4.5 5.0 4.8 0.7 497 chr3L 3281460 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281957 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-646 431 chr3L 3281463 3281478 chr3L 3281940 3281971 Doc 8 493 3.5 5.0 4.2 1.5 508 chr3L 3281463 intron CG12017 + chr3L 3281717 intron CG12017 + chr3L 3281971 intron CG12017 + chr3L_8_3280001 chr3L_3280001 RAL-646 432 chr3L 3306034 3306048 chr3L 3306250 3306263 4 223 4.0 4.5 4.2 0.8 229 chr3L 3306034 intron ZnT63C + chr3L 3306148 intron ZnT63C + chr3L 3306263 intron ZnT63C + chr3L_4_3305001 chr3L_3305001 RAL-646 433 chr3L 3475076 3475109 chr3L 3475520 3475553 jockey 9 441 1.0 3.5 2.2 2.8 477 chr3L 3475076 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-646 434 chr3L 3494755 3494779 chr3L 3494831 3494857 7 77 2.0 1.5 1.8 2.5 102 chr3L 3494755 intron CG42324 + chr3L 3494806 intron CG42324 + chr3L 3494857 intron CG42324 + chr3L_7_3490001 chr3L_3490001 RAL-646 435 chr3L 3601296 3601332 chr3L 3606607 3606643 copia 7 5309 3.0 0.5 1.8 2.5 5347 chr3L 3601296 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-646 436 chr3L 3795595 3795625 chr3L 3795672 3795701 5 77 1.5 2.5 2.0 1.7 106 chr3L 3795595 intron CG32264 - chr3L 3795648 intron CG32264 - chr3L 3795701 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-646 437 chr3L 3798056 3798072 chr3L 3798137 3798152 5 79 3.0 4.5 3.8 1.0 96 chr3L 3798056 intron CG32264 - chr3L 3798104 intron CG32264 - chr3L 3798152 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-646 438 chr3L 3802944 3802958 chr3L 3803027 3803040 6 81 8.5 2.5 5.5 0.9 96 chr3L 3802944 intron CG32264 - chr3L 3802992 intron CG32264 - chr3L 3803040 intron CG32264 - chr3L_6_3800001 chr3L_3800001 RAL-646 439 chr3L 3815053 3815081 chr3L 3815134 3815162 8 81 2.0 0.5 1.2 3.6 109 chr3L 3815053 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815162 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-646 440 chr3L 4208742 4208770 chr3L 4208820 4208847 6 76 1.0 0.5 0.8 3.3 105 chr3L 4208742 intron,intron CG43367 +,Cpr64Aa - chr3L 4208794 intron,intron CG43367 +,Cpr64Aa - chr3L 4208847 intron,intron CG43367 +,Cpr64Aa - chr3L_6_4205001 chr3L_4205001 RAL-646 441 chr3L 4342421 4342436 chr3L 4342493 4342515 5 77 3.5 1.5 2.5 1.4 94 chr3L 4342421 intron Cip4 - chr3L 4342468 intron Cip4 - chr3L 4342515 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-646 442 chr3L 4657969 4657993 chr3L 4658431 4658448 8 461 1.0 1.0 1.0 4.0 479 chr3L 4657969 intron axo - chr3L 4658208 intron axo - chr3L 4658448 intron axo - chr3L_8_4655001 chr3L_4655001 RAL-646 443 chr3L 4748702 4748715 chr3L 4748793 4748806 7 90 5.0 1.5 3.2 1.7 104 chr3L 4748702 intron RhoGEF64C + chr3L 4748754 intron RhoGEF64C + chr3L 4748806 intron RhoGEF64C + chr3L_7_4745001 chr3L_4745001 RAL-646 444 chr3L 4858301 4858335 chr3L 4858391 4858394 6 84 6.0 3.0 4.5 1.1 93 chr3L 4858301 intergenic not near genes chr3L 4858348 intergenic not near genes chr3L 4858394 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-646 445 chr3L 5034162 5034191 chr3L 5043314 5043343 roo 4 9151 3.0 0.5 1.8 1.4 9181 chr3L 5034162 intron Con - chr3L 5038752 intron Con - chr3L 5043343 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-646 446 chr3L 5104485 5104505 chr3L 5124618 5124638 4 20134 0.5 0.5 0.5 2.7 20153 chr3L 5104485 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124638 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-646 447 chr3L 5164635 5164663 chr3L 5164711 5164739 7 74 1.0 0.5 0.8 3.9 104 chr3L 5164635 intron shep - chr3L 5164687 intron shep - chr3L 5164739 intron shep - chr3L_7_5160001 chr3L_5160001 RAL-646 448 chr3L 5212241 5212270 chr3L 5212320 5212353 7 79 1.5 2.5 2.0 2.3 112 chr3L 5212241 intron shep - chr3L 5212297 intron shep - chr3L 5212353 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-646 449 chr3L 5388202 5388233 chr3L 5388526 5388557 8 322 3.5 0.0 1.8 2.9 355 chr3L 5388202 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388557 intergenic not near genes chr3L_8_5385001 chr3L_5385001 RAL-646 450 chr3L 5483072 5483084 chr3L 5483191 5483203 4 119 0.0 5.0 2.5 1.1 131 chr3L 5483072 exon CG4835 + chr3L 5483138 exon CG4835 + chr3L 5483203 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-646 451 chr3L 5498401 5498420 chr3L 5498478 5498497 10 76 3.5 2.0 2.8 2.6 96 chr3L 5498401 exon blanks - chr3L 5498449 exon blanks - chr3L 5498497 exon blanks - chr3L_10_5495001 chr3L_5495001 RAL-646 452 chr3L 5582004 5582021 chr3L 5582081 5582098 6 77 1.5 0.0 0.8 3.3 94 chr3L 5582004 intergenic not near genes chr3L 5582051 intergenic not near genes chr3L 5582098 intergenic not near genes chr3L_6_5580001 chr3L_5580001 RAL-646 453 chr3L 5910032 5910064 chr3L 5910272 5910305 pogo 6 241 0.5 0.5 0.5 4.0 273 chr3L 5910032 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910305 intron CG13288 + chr3L_6_5910001 chr3L_5910001 RAL-646 454 chr3L 5992599 5992616 chr3L 5992701 5992714 4 100 5.0 2.0 3.5 0.9 115 chr3L 5992599 intergenic not near genes chr3L 5992656 intergenic not near genes chr3L 5992714 intergenic not near genes chr3L_4_5990001 chr3L_5990001 RAL-646 455 chr3L 6040370 6040392 chr3L 6042725 6042746 Doc 7 2353 0.5 2.0 1.2 3.2 2376 chr3L 6040370 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042746 intergenic not near genes chr3L_7_6040001 chr3L_6040001 RAL-646 456 chr3L 6220929 6220945 chr3L 6230070 6230090 roo 5 9148 2.5 2.0 2.2 1.6 9161 chr3L 6220929 5` UTR pncr008:3L + chr3L 6225510 intergenic not near genes chr3L 6230090 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-646 457 chr3L 6573657 6573671 chr3L 6573760 6573774 8 102 3.0 4.0 3.5 1.8 117 chr3L 6573657 intron,intron CG18769 +,jv - chr3L 6573716 intron,intron CG18769 +,jv - chr3L 6573774 intron,intron CG18769 +,jv - chr3L_8_6570001 chr3L_6570001 RAL-646 458 chr3L 6652083 6652110 chr3L 6652165 6652186 4 81 2.5 4.0 3.2 1.0 103 chr3L 6652083 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652186 intergenic not near genes chr3L_4_6650001 chr3L_6650001 RAL-646 459 chr3L 7033058 7033072 chr3L 7033154 7033158 4 94 3.0 5.0 4.0 0.8 100 chr3L 7033058 intron Mp + chr3L 7033108 intron Mp + chr3L 7033158 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-646 460 chr3L 7033073 7033082 chr3L 7033150 7033171 6 93 1.5 4.0 2.8 1.6 98 chr3L 7033073 intron Mp + chr3L 7033122 intron Mp + chr3L 7033171 intron Mp + chr3L_6_7030001 chr3L_7030001 RAL-646 461 chr3L 7079605 7079631 chr3L 7079681 7079700 6 76 3.5 0.0 1.8 2.1 95 chr3L 7079605 intergenic not near genes chr3L 7079652 intergenic not near genes chr3L 7079700 intergenic not near genes chr3L_6_7075001 chr3L_7075001 RAL-646 462 chr3L 7090035 7090054 chr3L 7090114 7090135 5 80 2.0 1.0 1.5 2.0 100 chr3L 7090035 intergenic not near genes chr3L 7090085 intergenic not near genes chr3L 7090135 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-646 463 chr3L 7100429 7100465 chr3L 7100516 7100542 5 79 3.0 1.0 2.0 1.7 113 chr3L 7100429 intron form3 + chr3L 7100486 intron form3 + chr3L 7100542 intron form3 + chr3L_5_7100001 chr3L_7100001 RAL-646 464 chr3L 7201734 7201770 chr3L 7201811 7201822 11 72 3.0 2.5 2.8 2.9 88 chr3L 7201734 intergenic not near genes chr3L 7201778 intergenic not near genes chr3L 7201822 intergenic not near genes chr3L_11_7200001 chr3L_7200001 RAL-646 465 chr3L 7262499 7262520 chr3L 7262597 7262619 4 99 2.0 0.0 1.0 2.0 120 chr3L 7262499 intron CG14830 - chr3L 7262559 intron CG14830 - chr3L 7262619 intron CG14830 - chr3L_4_7260001 chr3L_7260001 RAL-646 466 chr3L 7263336 7263351 chr3L 7263422 7263440 8 88 6.5 1.0 3.8 1.7 104 chr3L 7263336 intron CG14830 - chr3L 7263388 intron CG14830 - chr3L 7263440 intron CG14830 - chr3L_8_7260001 chr3L_7260001 RAL-646 467 chr3L 7285451 7285466 chr3L 7285528 7285544 4 78 2.0 1.5 1.8 1.4 93 chr3L 7285451 intron unc-13-4A - chr3L 7285498 intron unc-13-4A - chr3L 7285544 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-646 468 chr3L 7355678 7355683 chr3L 7362668 7362686 4 6993 30.5 35.0 32.8 0.1 7008 chr3L 7355678 exon CTCF - chr3L 7359182 exon pst - chr3L 7362686 exon Sec63 + chr3L_4_7355001 chr3L_7355001 RAL-646 469 chr3L 7449442 7449454 chr3L 7449522 7449534 4 78 0.0 2.5 1.2 1.8 92 chr3L 7449442 intron CG42458 + chr3L 7449488 intron CG42458 + chr3L 7449534 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-646 470 chr3L 7462969 7462990 chr3L 7463046 7463068 5 77 0.0 2.0 1.0 2.5 99 chr3L 7462969 intergenic not near genes chr3L 7463018 intergenic not near genes chr3L 7463068 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-646 471 chr3L 7508678 7508702 chr3L 7508762 7508786 5 84 1.0 1.0 1.0 2.5 108 chr3L 7508678 intergenic not near genes chr3L 7508732 intergenic not near genes chr3L 7508786 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-646 472 chr3L 7572293 7572313 chr3L 7572371 7572400 8 85 2.0 2.5 2.2 2.5 107 chr3L 7572293 intergenic not near genes chr3L 7572346 intergenic not near genes chr3L 7572400 intergenic not near genes chr3L_8_7570001 chr3L_7570001 RAL-646 473 chr3L 7633702 7633717 chr3L 7633855 7633869 4 152 2.0 3.5 2.8 1.1 167 chr3L 7633702 intron CG33275 + chr3L 7633786 intron CG33275 + chr3L 7633869 intron CG33275 + chr3L_4_7630001 chr3L_7630001 RAL-646 474 chr3L 7793717 7793742 chr3L 7800769 7800794 297 7 7051 0.5 0.5 0.5 4.7 7077 chr3L 7793717 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-646 475 chr3L 7886529 7886541 chr3L 7889046 7889059 Stalker4 6 2517 0.5 2.5 1.5 2.4 2530 chr3L 7886529 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889059 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-646 476 chr3L 7985367 7985397 chr3L 7987693 7987725 NOF 6 2328 2.5 1.5 2.0 2.0 2358 chr3L 7985367 intron nmo + chr3L 7986546 intron nmo + chr3L 7987725 intron nmo + chr3L_6_7985001 chr3L_7985001 RAL-646 477 chr3L 8005992 8006015 chr3L 8006079 8006096 7 88 1.5 3.5 2.5 2.0 104 chr3L 8005992 intron nmo + chr3L 8006044 intron nmo + chr3L 8006096 intron nmo + chr3L_7_8005001 chr3L_8005001 RAL-646 478 chr3L 8295791 8295823 chr3L 8295947 8295981 4 158 0.5 1.0 0.8 2.2 190 chr3L 8295791 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295981 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-646 479 chr3L 8316602 8316607 chr3L 8317353 8317358 4 750 1.5 2.0 1.8 1.4 756 chr3L 8316602 intergenic not near genes chr3L 8316980 intergenic not near genes chr3L 8317358 intergenic not near genes chr3L_4_8315001 chr3L_8315001 RAL-646 480 chr3L 8395833 8395864 chr3L 8395928 8395960 4 89 4.0 1.0 2.5 1.1 127 chr3L 8395833 intergenic CG7120 + chr3L 8395896 intergenic CG7120 + chr3L 8395960 intergenic CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-646 481 chr3L 8551744 8551768 chr3L 8551827 8551851 9 82 0.0 2.5 1.2 4.1 107 chr3L 8551744 intron rhea + chr3L 8551798 intron rhea + chr3L 8551851 intron rhea + chr3L_9_8550001 chr3L_8550001 RAL-646 482 chr3L 8827510 8827542 chr3L 8827595 8827609 8 85 1.5 3.0 2.2 2.5 99 chr3L 8827510 5` UTR dally + chr3L 8827560 5` UTR dally + chr3L 8827609 5` UTR dally + chr3L_8_8825001 chr3L_8825001 RAL-646 483 chr3L 8849223 8849242 chr3L 8849302 8849318 5 78 2.5 1.0 1.8 1.8 95 chr3L 8849223 intron dally + chr3L 8849270 intron dally + chr3L 8849318 intron dally + chr3L_5_8845001 chr3L_8845001 RAL-646 484 chr3L 9003948 9003978 chr3L 9004029 9004059 5 83 2.5 1.5 2.0 1.7 111 chr3L 9003948 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004059 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-646 485 chr3L 9076934 9076960 chr3L 9084491 9084519 412 4 7554 2.0 2.0 2.0 1.3 7585 chr3L 9076934 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084519 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-646 486 chr3L 9219248 9219273 chr3L 9219915 9219926 jockey 6 664 6.5 3.0 4.8 1.0 678 chr3L 9219248 intergenic not near genes chr3L 9219587 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-646 487 chr3L 9270641 9270651 chr3L 9278395 9278406 roo 4 7755 2.0 3.5 2.8 1.1 7765 chr3L 9270641 intron GluRIB + chr3L 9274524 intron GluRIB + chr3L 9278406 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-646 488 chr3L 9443528 9443540 chr3L 9445315 9445327 S-element 5 1786 0.5 2.5 1.5 2.0 1799 chr3L 9443528 intron CG33926 + chr3L 9444428 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-646 489 chr3L 9524044 9524066 chr3L 9524116 9524146 8 74 1.5 3.5 2.5 2.3 102 chr3L 9524044 intron CG33700 - chr3L 9524095 intron CG33700 - chr3L 9524146 intron CG33700 - chr3L_8_9520001 chr3L_9520001 RAL-646 490 chr3L 9575914 9575946 chr3L 9580992 9581016 jockey 4 5076 2.5 3.5 3.0 1.0 5102 chr3L 9575914 intron CG42673 + chr3L 9578465 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-646 491 chr3L 10106523 10106547 chr3L 10108768 10108792 6 2245 17.5 11.5 14.5 0.4 2269 chr3L 10106523 intron dpr6 + chr3L 10107658 intron dpr6 + chr3L 10108792 intron dpr6 + chr3L_6_10105001 chr3L_10105001 RAL-646 492 chr3L 10308737 10308773 chr3L 10308814 10308849 9 77 1.5 1.5 1.5 3.6 112 chr3L 10308737 intergenic not near genes chr3L 10308793 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_9_10305001 chr3L_10305001 RAL-646 493 chr3L 10417575 10417590 chr3L 10417646 10417667 5 71 5.0 3.5 4.2 1.0 92 chr3L 10417575 intergenic not near genes chr3L 10417621 intergenic not near genes chr3L 10417667 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-646 494 chr3L 10501247 10501263 chr3L 10501315 10501347 5 81 2.5 1.0 1.8 1.8 100 chr3L 10501247 intron A2bp1 + chr3L 10501297 intron A2bp1 + chr3L 10501347 intron A2bp1 + chr3L_5_10500001 chr3L_10500001 RAL-646 495 chr3L 10658086 10658210 chr3L 10658162 10658323 8 119 1.0 1.0 1.0 4.0 237 chr3L 10658086 intron CG32066 - chr3L 10658204 intron CG32066 - chr3L 10658323 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-646 496 chr3L 10748743 10748759 chr3L 10748834 10748851 6 92 1.0 2.0 1.5 2.4 108 chr3L 10748743 intergenic not near genes chr3L 10748797 intergenic not near genes chr3L 10748851 intergenic not near genes chr3L_6_10745001 chr3L_10745001 RAL-646 497 chr3L 10940089 10940101 chr3L 10940150 10940172 8 68 1.5 4.5 3.0 2.0 83 chr3L 10940089 intergenic not near genes chr3L 10940130 intergenic not near genes chr3L 10940172 intergenic not near genes chr3L_8_10940001 chr3L_10940001 RAL-646 498 chr3L 10957009 10957033 chr3L 10957081 10957105 6 74 1.0 3.0 2.0 2.0 96 chr3L 10957009 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957105 intergenic not near genes chr3L_6_10955001 chr3L_10955001 RAL-646 499 chr3L 11087080 11087086 chr3L 11088869 11088875 S-element 4 1788 3.0 7.0 5.0 0.7 1795 chr3L 11087080 intron JIL-1 - chr3L 11087978 intron JIL-1 - chr3L 11088875 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-646 500 chr3L 11105298 11105324 chr3L 11107009 11107035 X-element 7 1709 1.5 1.5 1.5 2.8 1737 chr3L 11105298 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107035 exon CG32073 - chr3L_7_11105001 chr3L_11105001 RAL-646 501 chr3L 11264466 11264491 chr3L 11271418 11271443 17.6 6 6948 3.0 1.0 2.0 2.0 6977 chr3L 11264466 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271443 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-646 502 chr3L 11435562 11435587 chr3L 11435730 11435756 12 169 3.5 2.0 2.8 3.2 194 chr3L 11435562 intergenic CG6149 -,CR44548 + chr3L 11435659 5` UTR CR44548 + chr3L 11435756 5` UTR CR44548 + chr3L_12_11435001 chr3L_11435001 RAL-646 503 chr3L 11564788 11564812 chr3L 11572404 11572435 412 7 7619 0.5 4.0 2.2 2.2 7647 chr3L 11564788 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572435 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-646 504 chr3L 11579555 11579584 chr3L 11579661 11579690 7 106 1.0 1.0 1.0 3.5 135 chr3L 11579555 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_7_11575001 chr3L_11575001 RAL-646 505 chr3L 11633604 11633630 chr3L 11633683 11633709 4 79 1.5 0.5 1.0 2.0 105 chr3L 11633604 intron CG32091 + chr3L 11633656 intron CG32091 + chr3L 11633709 intron CG32091 + chr3L_4_11630001 chr3L_11630001 RAL-646 506 chr3L 11633873 11633903 chr3L 11634206 11634236 5 332 0.5 1.0 0.8 2.8 363 chr3L 11633873 intron CG32091 + chr3L 11634054 intron CG32091 + chr3L 11634236 intron CG32091 + chr3L_5_11630001 chr3L_11630001 RAL-646 507 chr3L 11723088 11723113 chr3L 11727883 11727902 Doc 4 4792 0.5 0.0 0.2 3.3 4814 chr3L 11723088 3` UTR Bmcp + chr3L 11725495 intron Bmcp + chr3L 11727902 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-646 508 chr3L 11744012 11744035 chr3L 11744120 11744143 6 108 4.5 0.0 2.2 1.9 131 chr3L 11744012 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744143 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-646 509 chr3L 11850151 11850170 chr3L 11850238 11850263 5 93 1.5 0.0 0.8 2.8 112 chr3L 11850151 intergenic CG44837 - chr3L 11850207 intergenic CG44837 - chr3L 11850263 intergenic CG44837 - chr3L_5_11850001 chr3L_11850001 RAL-646 510 chr3L 11864563 11864581 chr3L 11865858 11865876 pogo 4 1295 2.5 2.0 2.2 1.2 1313 chr3L 11864563 intron CG44837 - chr3L 11865220 intron CG44837 - chr3L 11865876 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-646 511 chr3L 11919532 11919563 chr3L 11919689 11919702 7 152 1.0 0.5 0.8 3.9 170 chr3L 11919532 intron CG44837 - chr3L 11919617 intron CG44837 - chr3L 11919702 intron CG44837 - chr3L_7_11915001 chr3L_11915001 RAL-646 512 chr3L 11930205 11930220 chr3L 11930481 11930495 5 276 6.0 0.0 3.0 1.2 290 chr3L 11930205 intron,intron CG44837 -,byn + chr3L 11930350 intron,intron CG44837 -,byn + chr3L 11930495 intron,intron CG44837 -,byn + chr3L_5_11930001 chr3L_11930001 RAL-646 513 chr3L 11935894 11935914 chr3L 11935994 11936011 5 99 4.0 1.5 2.8 1.3 117 chr3L 11935894 intron,3` UTR CG44837 -,byn + chr3L 11935952 intron CG44837 - chr3L 11936011 intron CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-646 514 chr3L 12013911 12013934 chr3L 12014002 12014025 6 91 3.5 3.0 3.2 1.4 114 chr3L 12013911 intron rols - chr3L 12013968 intron rols - chr3L 12014025 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-646 515 chr3L 12052712 12052733 chr3L 12052801 12052821 4 88 3.0 2.0 2.5 1.1 109 chr3L 12052712 intron rols - chr3L 12052766 intron rols - chr3L 12052821 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-646 516 chr3L 12304090 12304116 chr3L 12304166 12304192 6 75 2.0 4.5 3.2 1.4 102 chr3L 12304090 intergenic not near genes chr3L 12304141 intergenic not near genes chr3L 12304192 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-646 517 chr3L 12369537 12369565 chr3L 12369624 12369655 4 83 0.5 0.0 0.2 3.3 118 chr3L 12369537 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369655 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-646 518 chr3L 12412743 12412765 chr3L 12412822 12412822 8 78 1.5 0.0 0.8 4.4 79 chr3L 12412743 intron CG32103 - chr3L 12412782 intron CG32103 - chr3L 12412822 intron CG32103 - chr3L_8_12410001 chr3L_12410001 RAL-646 519 chr3L 12459537 12459553 chr3L 12459892 12459903 7 356 1.5 1.5 1.5 2.8 366 chr3L 12459537 intergenic not near genes chr3L 12459720 intergenic not near genes chr3L 12459903 intergenic not near genes chr3L_7_12455001 chr3L_12455001 RAL-646 520 chr3L 12675310 12675334 chr3L 12675385 12675415 7 80 0.5 0.0 0.2 5.8 105 chr3L 12675310 intergenic not near genes chr3L 12675362 intergenic not near genes chr3L 12675415 intergenic not near genes chr3L_7_12675001 chr3L_12675001 RAL-646 521 chr3L 12867546 12867578 chr3L 12867638 12867671 4 93 0.5 0.0 0.2 3.3 125 chr3L 12867546 intergenic not near genes chr3L 12867608 intergenic not near genes chr3L 12867671 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-646 522 chr3L 12928947 12928979 chr3L 12929031 12929062 19 83 1.0 3.0 2.0 6.3 115 chr3L 12928947 intergenic not near genes chr3L 12929004 intergenic not near genes chr3L 12929062 intergenic not near genes chr3L_19_12925001 chr3L_12925001 RAL-646 523 chr3L 12957787 12957816 chr3L 12962269 12962298 copia 6 4481 2.0 2.0 2.0 2.0 4511 chr3L 12957787 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-646 524 chr3L 13008819 13008826 chr3L 13008978 13008985 4 158 2.5 8.0 5.2 0.6 166 chr3L 13008819 exon CG14117 + chr3L 13008902 intron CG14117 + chr3L 13008985 exon CG14117 + chr3L_4_13005001 chr3L_13005001 RAL-646 525 chr3L 13204809 13204835 chr3L 13204907 13204937 4 100 2.5 1.0 1.8 1.4 128 chr3L 13204809 intergenic not near genes chr3L 13204873 intergenic not near genes chr3L 13204937 intergenic not near genes chr3L_4_13200001 chr3L_13200001 RAL-646 526 chr3L 13267287 13267309 chr3L 13267400 13267421 6 113 3.5 1.0 2.2 1.9 134 chr3L 13267287 intron caps + chr3L 13267354 intron caps + chr3L 13267421 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-646 527 chr3L 13317789 13317822 chr3L 13317879 13317912 4 90 2.5 2.5 2.5 1.1 123 chr3L 13317789 intergenic not near genes chr3L 13317850 intergenic not near genes chr3L 13317912 intergenic not near genes chr3L_4_13315001 chr3L_13315001 RAL-646 528 chr3L 13497073 13497103 chr3L 13497151 13497181 9 77 3.0 4.5 3.8 1.9 108 chr3L 13497073 intron Tgi + chr3L 13497127 intron Tgi + chr3L 13497181 intron Tgi + chr3L_9_13495001 chr3L_13495001 RAL-646 529 chr3L 13525155 13525187 chr3L 13532951 13532983 roo 8 7792 2.5 2.5 2.5 2.3 7828 chr3L 13525155 intergenic not near genes chr3L 13529069 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-646 530 chr3L 13648888 13648919 chr3L 13648977 13649006 8 85 2.0 2.0 2.0 2.7 118 chr3L 13648888 intron bru-3 - chr3L 13648947 intron bru-3 - chr3L 13649006 intron bru-3 - chr3L_8_13645001 chr3L_13645001 RAL-646 531 chr3L 13774640 13774664 chr3L 13774726 13774750 4 82 1.5 2.0 1.8 1.4 110 chr3L 13774640 intron bru-3 - chr3L 13774695 intron bru-3 - chr3L 13774750 intron bru-3 - chr3L_4_13770001 chr3L_13770001 RAL-646 532 chr3L 14245566 14245592 chr3L 14245660 14245683 1360 8 92 3.5 2.0 2.8 2.1 117 chr3L 14245566 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_8_14245001 chr3L_14245001 RAL-646 533 chr3L 14295988 14296008 chr3L 14296473 14296484 roo 5 483 4.5 1.5 3.0 1.2 496 chr3L 14295988 intron fz + chr3L 14296236 intron fz + chr3L 14296484 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-646 534 chr3L 14296990 14297019 chr3L 14297075 14297102 6 84 1.0 1.5 1.2 2.7 112 chr3L 14296990 intron fz + chr3L 14297046 intron fz + chr3L 14297102 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-646 535 chr3L 14303605 14303635 chr3L 14303699 14303726 5 91 0.5 2.0 1.2 2.3 121 chr3L 14303605 intron fz + chr3L 14303666 intron fz + chr3L 14303726 intron fz + chr3L_5_14300001 chr3L_14300001 RAL-646 536 chr3L 14411864 14411898 chr3L 14411942 14411977 6 78 0.0 0.5 0.2 5.0 113 chr3L 14411864 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411977 intron CG3919 + chr3L_6_14410001 chr3L_14410001 RAL-646 537 chr3L 14618411 14618421 chr3L 14618626 14618636 4 215 1.0 1.0 1.0 2.0 225 chr3L 14618411 intron shd + chr3L 14618524 intron shd + chr3L 14618636 intron shd + chr3L_4_14615001 chr3L_14615001 RAL-646 538 chr3L 14765726 14765744 chr3L 14765815 14765833 7 89 2.0 3.0 2.5 2.0 107 chr3L 14765726 3` UTR CG9384 + chr3L 14765780 3` UTR CG9384 + chr3L 14765833 3` UTR CG9384 + chr3L_7_14765001 chr3L_14765001 RAL-646 539 chr3L 14809187 14809208 chr3L 14809268 14809289 6 81 2.5 0.0 1.2 2.7 102 chr3L 14809187 intron CG17839 + chr3L 14809238 intron CG17839 + chr3L 14809289 intron CG17839 + chr3L_6_14805001 chr3L_14805001 RAL-646 540 chr3L 15099228 15099238 chr3L 15099735 15099741 4 505 12.5 14.5 13.5 0.3 513 chr3L 15099228 intron,intron CTPsyn +,CR43973 - chr3L 15099484 intron,3` UTR CTPsyn +,CR43973 - chr3L 15099741 intron CTPsyn + chr3L_4_15095001 chr3L_15095001 RAL-646 541 chr3L 15554927 15554951 chr3L 15556713 15556738 S-element 5 1786 0.0 0.5 0.2 4.2 1811 chr3L 15554927 intron AGO2 + chr3L 15555832 intron AGO2 + chr3L 15556738 intron AGO2 + chr3L_5_15555001 chr3L_15555001 RAL-646 542 chr3L 15584527 15584555 chr3L 15584603 15584631 8 76 1.0 2.5 1.8 2.9 104 chr3L 15584527 intron CG12304 + chr3L 15584579 intron CG12304 + chr3L 15584631 intron CG12304 + chr3L_8_15580001 chr3L_15580001 RAL-646 543 chr3L 15633187 15633207 chr3L 15633267 15633272 4 76 1.5 1.0 1.2 1.8 85 chr3L 15633187 intron comm3 - chr3L 15633230 intron comm3 - chr3L 15633272 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-646 544 chr3L 15738306 15738331 chr3L 15738407 15738434 9 100 1.0 1.0 1.0 4.5 128 chr3L 15738306 intergenic not near genes chr3L 15738370 intergenic not near genes chr3L 15738434 intergenic not near genes chr3L_9_15735001 chr3L_15735001 RAL-646 545 chr3L 15840039 15840058 chr3L 15840209 15840224 4 169 3.0 0.5 1.8 1.4 185 chr3L 15840039 intron CG32150 - chr3L 15840132 intron CG32150 - chr3L 15840224 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-646 546 chr3L 15899243 15899255 chr3L 15899794 15899810 jockey 4 560 3.0 3.0 3.0 1.0 567 chr3L 15899243 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899810 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-646 547 chr3L 16304869 16304886 chr3L 16304944 16304962 4 77 2.5 1.5 2.0 1.3 93 chr3L 16304869 intergenic CG43249 +,CG13043 - chr3L 16304916 intergenic CG43249 +,CG13043 - chr3L 16304962 intergenic CG13043 -,CG43249 + chr3L_4_16300001 chr3L_16300001 RAL-646 548 chr3L 16360884 16360917 chr3L 16360962 16360995 16 76 4.0 4.0 4.0 3.2 111 chr3L 16360884 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360995 intron CG45057 - chr3L_16_16360001 chr3L_16360001 RAL-646 549 chr3L 16443853 16443869 chr3L 16446192 16446209 Doc 4 2340 1.0 1.5 1.2 1.8 2356 chr3L 16443853 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446209 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-646 550 chr3L 16493977 16494007 chr3L 16494494 16494522 jockey 12 516 4.0 4.0 4.0 2.4 545 chr3L 16493977 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494522 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-646 551 chr3L 16498532 16498551 chr3L 16498640 16498659 7 107 2.5 0.0 1.2 3.2 127 chr3L 16498532 intron,exon CG43373 -,st + chr3L 16498596 intron,intron CG43373 -,st + chr3L 16498659 intron,intron CG43373 -,st + chr3L_7_16495001 chr3L_16495001 RAL-646 552 chr3L 16560303 16560317 chr3L 16560388 16560402 4 85 1.0 0.5 0.8 2.2 99 chr3L 16560303 intergenic not near genes chr3L 16560352 intergenic not near genes chr3L 16560402 intergenic not near genes chr3L_4_16560001 chr3L_16560001 RAL-646 553 chr3L 16561112 16561138 chr3L 16561190 16561216 11 77 3.0 4.0 3.5 2.4 104 chr3L 16561112 intergenic not near genes chr3L 16561164 intergenic not near genes chr3L 16561216 intergenic not near genes chr3L_11_16560001 chr3L_16560001 RAL-646 554 chr3L 16563239 16563253 chr3L 16563320 16563333 4 80 0.5 0.0 0.2 3.3 94 chr3L 16563239 intergenic Mipp1 - chr3L 16563286 intergenic Mipp1 - chr3L 16563333 intergenic Mipp1 - chr3L_4_16560001 chr3L_16560001 RAL-646 555 chr3L 16652685 16652707 chr3L 16652764 16652786 6 78 2.0 1.5 1.8 2.1 101 chr3L 16652685 intron Baldspot - chr3L 16652736 intron Baldspot - chr3L 16652786 intron Baldspot - chr3L_6_16650001 chr3L_16650001 RAL-646 556 chr3L 16749211 16749234 chr3L 16749301 16749324 4 90 1.5 1.0 1.2 1.8 113 chr3L 16749211 intergenic not near genes chr3L 16749268 intergenic not near genes chr3L 16749324 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-646 557 chr3L 16873341 16873362 chr3L 16873445 16873467 5 105 1.5 2.0 1.8 1.8 126 chr3L 16873341 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873467 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-646 558 chr3L 16945729 16945742 chr3L 16954880 16954893 roo 13 9151 8.5 1.5 5.0 2.2 9164 chr3L 16945729 exon Obp73a + chr3L 16950311 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-646 559 chr3L 16945743 16945752 chr3L 16954879 16954905 roo 4 9144 6.0 1.5 3.8 0.8 9162 chr3L 16945743 exon Obp73a + chr3L 16950324 intergenic not near genes chr3L 16954905 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-646 560 chr3L 17026796 17026813 chr3L 17026871 17026891 8 78 5.0 1.5 3.2 1.9 95 chr3L 17026796 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026891 3` UTR Fit2 + chr3L_8_17025001 chr3L_17025001 RAL-646 561 chr3L 17085006 17085030 chr3L 17094155 17094179 roo 4 9149 1.0 1.0 1.0 2.0 9173 chr3L 17085006 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094179 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-646 562 chr3L 17097564 17097567 chr3L 17097696 17097699 4 132 4.5 1.5 3.0 1.0 135 chr3L 17097564 intron Rbp6 - chr3L 17097632 intron Rbp6 - chr3L 17097699 intron Rbp6 - chr3L_4_17095001 chr3L_17095001 RAL-646 563 chr3L 17097578 17097586 chr3L 17097695 17097718 6 126 0.5 1.5 1.0 3.0 140 chr3L 17097578 intron Rbp6 - chr3L 17097648 intron Rbp6 - chr3L 17097718 intron Rbp6 - chr3L_6_17095001 chr3L_17095001 RAL-646 564 chr3L 17120653 17120683 chr3L 17120729 17120758 4 76 1.0 0.5 0.8 2.2 105 chr3L 17120653 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120758 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-646 565 chr3L 17142728 17142753 chr3L 17142955 17142978 8 223 1.0 2.0 1.5 3.2 250 chr3L 17142728 intron Rbp6 - chr3L 17142853 intron Rbp6 - chr3L 17142978 intron Rbp6 - chr3L_8_17140001 chr3L_17140001 RAL-646 566 chr3L 17146954 17146989 chr3L 17147036 17147071 4 82 1.0 1.0 1.0 2.0 117 chr3L 17146954 intron Rbp6 - chr3L 17147012 intron Rbp6 - chr3L 17147071 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-646 567 chr3L 17149166 17149177 chr3L 17149245 17149258 5 80 3.0 0.0 1.5 2.0 92 chr3L 17149166 intron Rbp6 - chr3L 17149212 intron Rbp6 - chr3L 17149258 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-646 568 chr3L 17272244 17272263 chr3L 17272377 17272396 4 133 2.5 1.5 2.0 1.3 152 chr3L 17272244 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272396 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-646 569 chr3L 17367441 17367453 chr3L 17367535 17367547 6 94 1.5 1.0 1.2 2.7 106 chr3L 17367441 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367547 intergenic CR45688 +,Cad74A - chr3L_6_17365001 chr3L_17365001 RAL-646 570 chr3L 17510748 17510754 chr3L 17510832 17510838 4 84 2.0 4.0 3.0 1.0 90 chr3L 17510748 exon Oatp74D + chr3L 17510793 intron Oatp74D + chr3L 17510838 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-646 571 chr3L 17516980 17517009 chr3L 17524538 17524564 412 6 7557 2.0 4.0 3.0 1.5 7584 chr3L 17516980 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-646 572 chr3L 17547592 17547607 chr3L 17547689 17547704 4 96 0.5 0.5 0.5 2.7 112 chr3L 17547592 intron Jon74E - chr3L 17547648 intron Jon74E - chr3L 17547704 intron Jon74E - chr3L_4_17545001 chr3L_17545001 RAL-646 573 chr3L 18106258 18106281 chr3L 18106377 18106385 5 115 3.5 0.0 1.8 1.8 127 chr3L 18106258 intergenic CG13698 -,mRpS26 + chr3L 18106322 intergenic CG13698 -,mRpS26 + chr3L 18106385 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-646 574 chr3L 18118853 18118876 chr3L 18118929 18118952 4 76 2.0 1.5 1.8 1.4 99 chr3L 18118853 3` UTR,intron CG32195 +,CG7341 + chr3L 18118902 3` UTR,intron CG32195 +,CG7341 + chr3L 18118952 3` UTR,intron CG32195 +,CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-646 575 chr3L 18267865 18267978 chr3L 18267942 18268055 4 77 1.0 1.0 1.0 2.0 190 chr3L 18267865 intergenic not near genes chr3L 18267960 intergenic not near genes chr3L 18268055 intergenic not near genes chr3L_4_18265001 chr3L_18265001 RAL-646 576 chr3L 18359600 18359622 chr3L 18359692 18359714 5 92 0.0 0.0 0.0 5.0 114 chr3L 18359600 intergenic not near genes chr3L 18359657 intergenic not near genes chr3L 18359714 intergenic not near genes chr3L_5_18355001 chr3L_18355001 RAL-646 577 chr3L 18464489 18464512 chr3L 18464573 18464598 6 81 2.5 5.0 3.8 1.2 109 chr3L 18464489 intergenic not near genes chr3L 18464544 intergenic not near genes chr3L 18464598 intergenic not near genes chr3L_6_18460001 chr3L_18460001 RAL-646 578 chr3L 18546704 18546730 chr3L 18546798 18546823 6 92 2.0 1.5 1.8 2.1 119 chr3L 18546704 intergenic not near genes chr3L 18546764 intergenic not near genes chr3L 18546823 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-646 579 chr3L 18582216 18582249 chr3L 18582301 18582334 7 85 1.0 0.0 0.5 4.7 118 chr3L 18582216 intergenic not near genes chr3L 18582275 intergenic not near genes chr3L 18582334 intergenic not near genes chr3L_7_18580001 chr3L_18580001 RAL-646 580 chr3L 18634648 18634656 chr3L 18634728 18634740 5 82 1.5 2.5 2.0 1.7 92 chr3L 18634648 intron MYPT-75D + chr3L 18634694 intron MYPT-75D + chr3L 18634740 intron MYPT-75D + chr3L_5_18630001 chr3L_18630001 RAL-646 581 chr3L 18772418 18772434 chr3L 18781099 18781114 roo 7 8679 2.5 4.0 3.2 1.7 8696 chr3L 18772418 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781114 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-646 582 chr3L 18896767 18896789 chr3L 18896901 18896904 8 132 1.0 0.5 0.8 4.4 137 chr3L 18896767 intron CG3902 - chr3L 18896836 intron CG3902 - chr3L 18896904 intron CG3902 - chr3L_8_18895001 chr3L_18895001 RAL-646 583 chr3L 19029461 19029477 chr3L 19029555 19029576 7 95 3.5 2.5 3.0 1.8 115 chr3L 19029461 intron nkd - chr3L 19029518 intron nkd - chr3L 19029576 intron nkd - chr3L_7_19025001 chr3L_19025001 RAL-646 584 chr3L 19082037 19082070 chr3L 19082137 19082164 12 101 0.5 1.5 1.0 6.0 127 chr3L 19082037 intron Mkp3 - chr3L 19082100 intron Mkp3 - chr3L 19082164 intron Mkp3 - chr3L_12_19080001 chr3L_19080001 RAL-646 585 chr3L 19117046 19117075 chr3L 19124489 19124522 mdg1 8 7445 4.0 1.5 2.8 2.1 7476 chr3L 19117046 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-646 586 chr3L 19138558 19138574 chr3L 19138639 19138654 5 80 2.5 5.0 3.8 1.0 96 chr3L 19138558 intron CG14082 - chr3L 19138606 intron CG14082 - chr3L 19138654 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-646 587 chr3L 19138575 19138588 chr3L 19138638 19138669 9 75 2.0 5.0 3.5 2.0 94 chr3L 19138575 intron CG14082 - chr3L 19138622 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_9_19135001 chr3L_19135001 RAL-646 588 chr3L 19182389 19182412 chr3L 19182468 19182493 5 80 0.5 0.5 0.5 3.3 104 chr3L 19182389 intron fz2 - chr3L 19182441 intron fz2 - chr3L 19182493 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-646 589 chr3L 19208070 19208091 chr3L 19209432 19209460 Doc 4 1369 3.0 2.5 2.8 1.1 1390 chr3L 19208070 intron fz2 - chr3L 19208765 intron fz2 - chr3L 19209460 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-646 590 chr3L 19527932 19527954 chr3L 19528011 19528033 5 79 3.5 0.5 2.0 1.7 101 chr3L 19527932 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528033 intergenic not near genes chr3L_5_19525001 chr3L_19525001 RAL-646 591 chr3L 19861844 19861850 chr3L 19863632 19863637 S-element 4 1788 0.0 1.0 0.5 2.7 1793 chr3L 19861844 5` UTR CR45433 + chr3L 19862740 intergenic not near genes chr3L 19863637 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-646 592 chr3L 19946394 19946418 chr3L 19946625 19946644 4 230 0.0 1.0 0.5 2.7 250 chr3L 19946394 intron Ac76E + chr3L 19946519 intron Ac76E + chr3L 19946644 intron Ac76E + chr3L_4_19945001 chr3L_19945001 RAL-646 593 chr3L 19961266 19961362 chr3L 19961342 19961436 7 77 1.0 0.5 0.8 3.9 170 chr3L 19961266 intron Ac76E + chr3L 19961351 intron Ac76E + chr3L 19961436 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-646 594 chr3L 19972504 19972532 chr3L 19972639 19972654 5 132 2.0 2.5 2.2 1.6 150 chr3L 19972504 intron Ac76E + chr3L 19972579 intron Ac76E + chr3L 19972654 intron Ac76E + chr3L_5_19970001 chr3L_19970001 RAL-646 595 chr3L 20143080 20143113 chr3L 20143160 20143173 8 77 0.5 2.0 1.2 3.6 93 chr3L 20143080 intergenic not near genes chr3L 20143126 intergenic not near genes chr3L 20143173 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-646 596 chr3L 20283677 20283701 chr3L 20283761 20283782 8 83 0.5 2.0 1.2 3.6 105 chr3L 20283677 intron gogo - chr3L 20283730 intron gogo - chr3L 20283782 intron gogo - chr3L_8_20280001 chr3L_20280001 RAL-646 597 chr3L 20593811 20593840 chr3L 20593889 20593906 5 72 1.0 1.5 1.2 2.3 95 chr3L 20593811 intergenic not near genes chr3L 20593858 intergenic not near genes chr3L 20593906 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-646 598 chr3L 20849275 20849291 chr3L 20849354 20849370 5 79 3.5 1.5 2.5 1.4 95 chr3L 20849275 intron CG32432 - chr3L 20849322 intron CG32432 - chr3L 20849370 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-646 599 chr3L 21014938 21014945 chr3L 21023400 21023409 Tirant 4 8467 2.5 4.0 3.2 1.0 8471 chr3L 21014938 intron skd - chr3L 21019174 intron skd - chr3L 21023409 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-646 600 chr3L 21158612 21158630 chr3L 21158685 21158688 6 69 1.0 2.5 1.8 2.1 76 chr3L 21158612 intron Ac78C - chr3L 21158650 intron Ac78C - chr3L 21158688 intron Ac78C - chr3L_6_21155001 chr3L_21155001 RAL-646 601 chr3L 21172836 21172871 chr3L 21172936 21172971 5 97 1.0 1.0 1.0 2.5 135 chr3L 21172836 intergenic chb +,asparagine-synthetase + chr3L 21172904 5` UTR chb + chr3L 21172971 5` UTR chb + chr3L_5_21170001 chr3L_21170001 RAL-646 602 chr3L 21186072 21186088 chr3L 21186125 21186160 4 68 1.5 2.0 1.8 1.4 88 chr3L 21186072 intron CG42337 - chr3L 21186116 intron CG42337 - chr3L 21186160 intron CG42337 - chr3L_4_21185001 chr3L_21185001 RAL-646 603 chr3L 21306149 21306164 chr3L 21315308 21315323 roo 4 9159 0.5 0.5 0.5 2.7 9174 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310736 intron Pc - chr3L 21315323 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-646 604 chr3L 21406994 21407012 chr3L 21407073 21407091 4 79 1.0 2.5 1.8 1.4 97 chr3L 21406994 intron rgn + chr3L 21407042 intron rgn + chr3L 21407091 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-646 605 chr3L 21498834 21498868 chr3L 21500470 21500504 1360 5 1632 2.0 2.5 2.2 1.6 1670 chr3L 21498834 intron Glg1 - chr3L 21499669 intron Glg1 - chr3L 21500504 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-646 606 chr3L 21749327 21749350 chr3L 21754476 21754510 Doc 7 5156 3.0 6.0 4.5 1.3 5183 chr3L 21749327 intron Syn1 - chr3L 21751918 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-646 607 chr3L 21794275 21794293 chr3L 21794392 21794410 6 116 4.0 2.0 3.0 1.5 135 chr3L 21794275 intergenic not near genes chr3L 21794342 intergenic not near genes chr3L 21794410 intergenic not near genes chr3L_6_21790001 chr3L_21790001 RAL-646 608 chr3L 21799939 21799961 chr3L 21800024 21800046 6 84 2.0 3.0 2.5 1.7 107 chr3L 21799939 intergenic not near genes chr3L 21799992 intergenic not near genes chr3L 21800046 intergenic not near genes chr3L_6_21795001 chr3L_21795001 RAL-646 609 chr3L 21849499 21849526 chr3L 21849581 21849608 8 82 1.0 0.5 0.8 4.4 109 chr3L 21849499 intron mub + chr3L 21849554 intron mub + chr3L 21849608 intron mub + chr3L_8_21845001 chr3L_21845001 RAL-646 610 chr3L 21852262 21852275 chr3L 21852351 21852368 5 92 2.5 1.5 2.0 1.7 106 chr3L 21852262 intron mub + chr3L 21852315 intron mub + chr3L 21852368 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-646 611 chr3L 21876935 21876965 chr3L 21877026 21877058 7 92 1.0 1.0 1.0 3.5 123 chr3L 21876935 intron mub + chr3L 21876996 intron mub + chr3L 21877058 intron mub + chr3L_7_21875001 chr3L_21875001 RAL-646 612 chr3L 21891148 21891180 chr3L 21891257 21891289 9 106 4.5 2.0 3.2 2.1 141 chr3L 21891148 intron mub + chr3L 21891218 intron mub + chr3L 21891289 intron mub + chr3L_9_21890001 chr3L_21890001 RAL-646 613 chr3L 21905493 21905501 chr3L 21905595 21905603 5 102 2.5 4.0 3.2 1.2 110 chr3L 21905493 intron mub + chr3L 21905548 intron mub + chr3L 21905603 intron mub + chr3L_5_21905001 chr3L_21905001 RAL-646 614 chr3L 22130517 22130520 chr3L 22130652 22130666 4 143 0.5 2.0 1.2 1.8 149 chr3L 22130517 intergenic not near genes chr3L 22130592 intergenic not near genes chr3L 22130666 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-646 615 chr3L 22328063 22328089 chr3L 22328161 22328187 8 95 1.5 3.5 2.5 2.3 124 chr3L 22328063 intron Ten-m - chr3L 22328125 intron Ten-m - chr3L 22328187 intron Ten-m - chr3L_8_22325001 chr3L_22325001 RAL-646 616 chr3L 22341506 22341534 chr3L 22341621 22341640 12 115 4.5 1.0 2.8 3.2 134 chr3L 22341506 intron Ten-m - chr3L 22341573 intron Ten-m - chr3L 22341640 intron Ten-m - chr3L_12_22340001 chr3L_22340001 RAL-646 617 chr3L 22409948 22409981 chr3L 22410025 22410035 5 70 1.0 4.0 2.5 1.4 87 chr3L 22409948 intergenic not near genes chr3L 22409992 intergenic not near genes chr3L 22410035 intergenic not near genes chr3L_5_22405001 chr3L_22405001 RAL-646 618 chr3L 22441114 22441139 chr3L 22441216 22441237 5 101 1.5 0.5 1.0 2.5 123 chr3L 22441114 intergenic not near genes chr3L 22441176 intergenic not near genes chr3L 22441237 intergenic not near genes chr3L_5_22440001 chr3L_22440001 RAL-646 619 chr3L 22463031 22463051 chr3L 22463135 22463158 6 106 4.5 2.0 3.2 1.4 127 chr3L 22463031 intergenic not near genes chr3L 22463094 intergenic not near genes chr3L 22463158 intergenic not near genes chr3L_6_22460001 chr3L_22460001 RAL-646 620 chr3L 22570427 22570458 chr3L 22570571 22570599 6 141 1.5 1.5 1.5 2.4 172 chr3L 22570427 intergenic not near genes chr3L 22570513 intergenic not near genes chr3L 22570599 intergenic not near genes chr3L_6_22570001 chr3L_22570001 RAL-646 621 chr3L 22577620 22577636 chr3L 22582408 22582424 Doc 6 4787 4.5 5.5 5.0 1.0 4804 chr3L 22577620 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582424 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-646 622 chr3L 22610039 22610051 chr3L 22610122 22610134 5 83 2.5 3.5 3.0 1.2 95 chr3L 22610039 intron CG14459 - chr3L 22610086 intron CG14459 - chr3L 22610134 intron CG14459 - chr3L_5_22610001 chr3L_22610001 RAL-646 623 chr3L 22617188 22617217 chr3L 22624640 22624669 blood 5 7450 3.0 0.5 1.8 1.8 7481 chr3L 22617188 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624669 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-646 624 chr3L 22853466 22853716 chr3L 22853553 22853802 13 86 2.0 2.5 2.2 4.1 336 chr3L 22853466 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853802 5` UTR CR43426 + chr3L_13_22850001 chr3L_22850001 RAL-646 625 chr3L 22897205 22897223 chr3L 22897286 22897306 7 81 3.5 5.0 4.2 1.3 101 chr3L 22897205 intergenic not near genes chr3L 22897256 intergenic not near genes chr3L 22897306 intergenic not near genes chr3L_7_22895001 chr3L_22895001 RAL-646 626 chr3L 22980576 22980598 chr3L 22980660 22980682 5 81 0.5 1.5 1.0 2.5 106 chr3L 22980576 intergenic not near genes chr3L 22980629 intergenic not near genes chr3L 22980682 intergenic not near genes chr3L_5_22980001 chr3L_22980001 RAL-646 627 chr3L 22989862 22989888 chr3L 22996836 22996862 297 5 6971 3.5 1.0 2.2 1.6 7000 chr3L 22989862 intergenic not near genes chr3L 22993362 intergenic not near genes chr3L 22996862 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-646 628 chr3L 23436991 23437009 chr3L 23437138 23437154 4 146 4.0 2.5 3.2 1.0 163 chr3L 23436991 intergenic not near genes chr3L 23437072 intergenic not near genes chr3L 23437154 intergenic not near genes chr3L_4_23435001 chr3L_23435001 RAL-646 629 chr3L 23635719 23635732 chr3L 23635799 23635811 7 80 5.0 2.5 3.8 1.5 92 chr3L 23635719 intron AGO3 + chr3L 23635765 intron AGO3 + chr3L 23635811 intron AGO3 + chr3L_7_23635001 chr3L_23635001 RAL-646 630 chr3L 23721332 23721362 chr3L 23721406 23721418 9 72 1.5 4.0 2.8 2.4 86 chr3L 23721332 intergenic not near genes chr3L 23721375 intergenic not near genes chr3L 23721418 intergenic not near genes chr3L_9_23720001 chr3L_23720001 RAL-646 631 chr3L 23750938 23750956 chr3L 23751139 23751160 5 202 19.5 11.5 15.5 0.3 222 chr3L 23750938 intergenic not near genes chr3L 23751049 intergenic not near genes chr3L 23751160 intergenic not near genes chr3L_5_23750001 chr3L_23750001 RAL-646 632 chr3L 24168787 24168822 chr3L 24176115 24176135 ZAM 7 7320 2.5 3.0 2.8 1.8 7348 chr3L 24168787 intron Snap25 + chr3L 24172461 intron Snap25 + chr3L 24176135 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-646 633 chr3L 25331635 25331652 chr3L 25331726 25331726 4 85 2.5 3.5 3.0 1.0 91 chr3L 25331635 intergenic not near genes chr3L 25331680 intergenic not near genes chr3L 25331726 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-646 634 chr3L 25334721 25334742 chr3L 25334804 25334825 4 82 0.5 0.5 0.5 2.7 104 chr3L 25334721 intergenic not near genes chr3L 25334773 intergenic not near genes chr3L 25334825 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-646 635 chr3L 25464029 25464099 chr3L 25464111 25464197 8 86 5.5 4.0 4.8 1.4 168 chr3L 25464029 intergenic not near genes chr3L 25464113 intergenic not near genes chr3L 25464197 intergenic not near genes chr3L_8_25460001 chr3L_25460001 RAL-646 636 chr3L 24948769 24948772 chr3L 25934972 25934978 diver2 4 986204 9.0 9.0 9.0 0.4 986209 chr3L 24948769 intergenic not near genes chr3L 25441874 intergenic not near genes chr3L 25934978 intron CG40178 - chr3L_4_25440001 chr3L_25440001 RAL-646 637 chr3L 27167957 27167973 chr3L 27168072 27168091 6 118 4.5 6.0 5.2 1.0 134 chr3L 27167957 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168091 intergenic not near genes chr3L_6_27165001 chr3L_27165001 RAL-646 638 chr3R 1443438 1443455 chr3R 1443514 1443519 6 74 1.5 1.0 1.2 2.7 81 chr3R 1443438 intron CG40155 + chr3R 1443478 intron CG40155 + chr3R 1443519 intron CG40155 + chr3R_6_1440001 chr3R_1440001 RAL-646 639 chr3R 4195481 4195506 chr3R 4195788 4195814 9 306 0.0 1.5 0.8 5.0 333 chr3R 4195481 intergenic not near genes chr3R 4195648 intergenic not near genes chr3R 4195814 intergenic not near genes chr3R_9_4195001 chr3R_4195001 RAL-646 640 chr3R 4408419 4408442 chr3R 4412717 4412734 Juan 4 4298 1.0 2.0 1.5 1.6 4315 chr3R 4408419 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412734 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-646 641 chr3R 4609555 4609582 chr3R 4610718 4610741 1360 9 1160 0.5 3.0 1.8 3.2 1186 chr3R 4609555 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610741 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-646 642 chr3R 4625490 4625520 chr3R 4625613 4625643 11 123 3.0 2.5 2.8 2.9 153 chr3R 4625490 intron 5-HT2A + chr3R 4625566 intron 5-HT2A + chr3R 4625643 intron 5-HT2A + chr3R_11_4625001 chr3R_4625001 RAL-646 643 chr3R 4729145 4729173 chr3R 4729413 4729448 7 272 3.0 3.0 3.0 1.8 303 chr3R 4729145 intron Nep2 - chr3R 4729296 intron Nep2 - chr3R 4729448 intron Nep2 - chr3R_7_4725001 chr3R_4725001 RAL-646 644 chr3R 4753241 4753266 chr3R 4757544 4757569 F-element 7 4302 5.0 5.5 5.2 1.1 4328 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755405 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-646 645 chr3R 4796133 4796148 chr3R 4796255 4796271 4 120 2.5 4.5 3.5 0.9 138 chr3R 4796133 intron ctrip - chr3R 4796202 intron ctrip - chr3R 4796271 intron ctrip - chr3R_4_4795001 chr3R_4795001 RAL-646 646 chr3R 4861565 4861597 chr3R 4861646 4861651 6 76 3.0 2.5 2.8 1.6 86 chr3R 4861565 intron opa + chr3R 4861608 intron opa + chr3R 4861651 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-646 647 chr3R 4991491 4991514 chr3R 4992038 4992063 4 548 3.0 1.5 2.2 1.2 572 chr3R 4991491 intron CG2022 - chr3R 4991777 intron CG2022 - chr3R 4992063 intron CG2022 - chr3R_4_4990001 chr3R_4990001 RAL-646 648 chr3R 5131340 5131370 chr3R 5131419 5131449 7 77 2.5 3.0 2.8 1.8 109 chr3R 5131340 intergenic not near genes chr3R 5131394 intergenic not near genes chr3R 5131449 intergenic not near genes chr3R_7_5130001 chr3R_5130001 RAL-646 649 chr3R 5236225 5236246 chr3R 5236353 5236374 5 127 1.0 3.0 2.0 1.7 149 chr3R 5236225 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236300 3` UTR rtp - chr3R 5236374 3` UTR rtp - chr3R_5_5235001 chr3R_5235001 RAL-646 650 chr3R 5278097 5278122 chr3R 5278177 5278203 6 81 2.0 3.0 2.5 1.7 106 chr3R 5278097 intron mtd - chr3R 5278150 intron mtd - chr3R 5278203 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-646 651 chr3R 5596633 5596653 chr3R 5596784 5596804 10 150 2.0 3.5 2.8 2.6 171 chr3R 5596633 intron,3` UTR kra -,snoRNA:Psi28S-3091b - chr3R 5596718 intron,3` UTR kra -,snoRNA:Psi28S-3091a - chr3R 5596804 intron,3` UTR kra -,snoRNA:Psi28S-3091a - chr3R_10_5595001 chr3R_5595001 RAL-646 652 chr3R 5627010 5627043 chr3R 5627126 5627159 5 116 0.5 0.0 0.2 4.2 149 chr3R 5627010 intergenic not near genes chr3R 5627084 intergenic not near genes chr3R 5627159 intergenic not near genes chr3R_5_5625001 chr3R_5625001 RAL-646 653 chr3R 5746014 5746044 chr3R 5746254 5746285 pogo 6 238 2.0 1.0 1.5 2.4 271 chr3R 5746014 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-646 654 chr3R 5772388 5772408 chr3R 5772546 5772566 7 158 1.0 2.0 1.5 2.8 178 chr3R 5772388 intron CG2082 - chr3R 5772477 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-646 655 chr3R 5916070 5916082 chr3R 5916189 5916202 5 120 2.5 1.5 2.0 1.7 132 chr3R 5916070 intron CG34113 - chr3R 5916136 intron CG34113 - chr3R 5916202 intron CG34113 - chr3R_5_5915001 chr3R_5915001 RAL-646 656 chr3R 5917476 5917498 chr3R 5917815 5917837 5 339 3.0 0.5 1.8 1.8 361 chr3R 5917476 intron CG34113 - chr3R 5917656 intron CG34113 - chr3R 5917837 intron CG34113 - chr3R_5_5915001 chr3R_5915001 RAL-646 657 chr3R 5927561 5927588 chr3R 5927799 5927808 pogo 7 237 1.0 3.0 2.0 2.3 247 chr3R 5927561 intron CG34113 - chr3R 5927684 intron CG34113 - chr3R 5927808 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-646 658 chr3R 6015967 6015990 chr3R 6024447 6024470 Tirant 5 8479 1.5 5.5 3.5 1.1 8503 chr3R 6015967 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024470 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-646 659 chr3R 6043424 6043450 chr3R 6043505 6043521 4 79 0.5 1.0 0.8 2.2 97 chr3R 6043424 intergenic not near genes chr3R 6043472 intergenic not near genes chr3R 6043521 intergenic not near genes chr3R_4_6040001 chr3R_6040001 RAL-646 660 chr3R 6206288 6206318 chr3R 6206505 6206511 BS 9 213 5.0 2.0 3.5 2.0 223 chr3R 6206288 exon Osi24 + chr3R 6206400 intron Osi24 + chr3R 6206511 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-646 661 chr3R 6284386 6284417 chr3R 6284693 6284695 4 300 1.0 1.5 1.2 1.8 309 chr3R 6284386 intergenic CG15597 - chr3R 6284540 3` UTR CG15597 - chr3R 6284695 exon CG15597 - chr3R_4_6280001 chr3R_6280001 RAL-646 662 chr3R 6408001 6408032 chr3R 6408132 6408163 5 131 1.5 0.0 0.8 2.8 162 chr3R 6408001 intron gpp + chr3R 6408082 intron gpp + chr3R 6408163 intron gpp + chr3R_5_6405001 chr3R_6405001 RAL-646 663 chr3R 6689339 6689369 chr3R 6689421 6689451 11 80 2.5 1.5 2.0 3.7 112 chr3R 6689339 intergenic Ccp84Af - chr3R 6689395 intergenic Ccp84Af - chr3R 6689451 intergenic Ccp84Af - chr3R_11_6685001 chr3R_6685001 RAL-646 664 chr3R 6737504 6737526 chr3R 6739291 6739313 Doc 7 1785 2.0 2.5 2.2 2.2 1809 chr3R 6737504 intron pb - chr3R 6738408 intron pb - chr3R 6739313 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-646 665 chr3R 6796198 6796218 chr3R 6796306 6796326 4 108 1.5 2.5 2.0 1.3 128 chr3R 6796198 intron Dfd + chr3R 6796262 intron Dfd + chr3R 6796326 intron Dfd + chr3R_4_6795001 chr3R_6795001 RAL-646 666 chr3R 7098703 7098726 chr3R 7098786 7098808 4 82 2.0 3.0 2.5 1.1 105 chr3R 7098703 exon Alh - chr3R 7098756 intron Alh - chr3R 7098808 intron Alh - chr3R_4_7095001 chr3R_7095001 RAL-646 667 chr3R 7193679 7193699 chr3R 7193764 7193784 4 85 1.5 1.0 1.2 1.8 105 chr3R 7193679 exon lap + chr3R 7193732 intron lap + chr3R 7193784 intron lap + chr3R_4_7190001 chr3R_7190001 RAL-646 668 chr3R 7320423 7320440 chr3R 7320511 7320528 4 88 1.0 1.5 1.2 1.8 105 chr3R 7320423 intergenic not near genes chr3R 7320476 intergenic not near genes chr3R 7320528 intergenic not near genes chr3R_4_7320001 chr3R_7320001 RAL-646 669 chr3R 7366555 7366568 chr3R 7366779 7366800 4 230 4.5 0.5 2.5 1.1 245 chr3R 7366555 exon MstProx - chr3R 7366678 exon MstProx - chr3R 7366800 exon MstProx - chr3R_4_7365001 chr3R_7365001 RAL-646 670 chr3R 7371043 7371068 chr3R 7371336 7371361 5 292 1.0 0.5 0.8 2.8 318 chr3R 7371043 intergenic not near genes chr3R 7371202 intergenic not near genes chr3R 7371361 intergenic not near genes chr3R_5_7370001 chr3R_7370001 RAL-646 671 chr3R 7390753 7390762 chr3R 7390826 7390840 5 78 1.0 2.0 1.5 2.0 87 chr3R 7390753 intergenic not near genes chr3R 7390796 intergenic not near genes chr3R 7390840 intergenic not near genes chr3R_5_7390001 chr3R_7390001 RAL-646 672 chr3R 7396061 7396167 chr3R 7396156 7396243 7 88 0.0 0.0 0.0 7.0 182 chr3R 7396061 intergenic not near genes chr3R 7396152 intergenic not near genes chr3R 7396243 intergenic not near genes chr3R_7_7395001 chr3R_7395001 RAL-646 673 chr3R 7404946 7404959 chr3R 7405022 7405035 5 76 0.0 0.5 0.2 4.2 89 chr3R 7404946 intergenic not near genes chr3R 7404990 intergenic not near genes chr3R 7405035 intergenic not near genes chr3R_5_7400001 chr3R_7400001 RAL-646 674 chr3R 7409303 7409328 chr3R 7409382 7409398 9 76 4.0 2.0 3.0 2.2 95 chr3R 7409303 exon Ir84a + chr3R 7409350 exon Ir84a + chr3R 7409398 intergenic Ir84a + chr3R_9_7405001 chr3R_7405001 RAL-646 675 chr3R 7675672 7675687 chr3R 7675919 7675929 4 246 5.0 3.5 4.2 0.8 257 chr3R 7675672 intron Nlg1 + chr3R 7675800 intron Nlg1 + chr3R 7675929 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-646 676 chr3R 7677916 7677931 chr3R 7678027 7678042 6 112 1.0 0.5 0.8 3.3 126 chr3R 7677916 intron Nlg1 + chr3R 7677979 intron Nlg1 + chr3R 7678042 intron Nlg1 + chr3R_6_7675001 chr3R_7675001 RAL-646 677 chr3R 7984946 7984967 chr3R 7985024 7985030 5 72 3.5 2.0 2.8 1.3 84 chr3R 7984946 intron CG2781 - chr3R 7984988 intron CG2781 - chr3R 7985030 intron CG2781 - chr3R_5_7980001 chr3R_7980001 RAL-646 678 chr3R 8090291 8090300 chr3R 8090466 8090473 5 176 0.5 5.5 3.0 1.2 182 chr3R 8090291 intergenic CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090473 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-646 679 chr3R 8101766 8101790 chr3R 8104850 8104874 G2 7 3083 1.5 1.5 1.5 2.8 3108 chr3R 8101766 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-646 680 chr3R 8182663 8182682 chr3R 8182745 8182776 9 92 1.5 2.5 2.0 3.0 113 chr3R 8182663 intergenic not near genes chr3R 8182720 intergenic not near genes chr3R 8182776 intergenic not near genes chr3R_9_8180001 chr3R_8180001 RAL-646 681 chr3R 8198901 8198926 chr3R 8199042 8199070 7 140 0.5 2.0 1.2 3.2 169 chr3R 8198901 intergenic not near genes chr3R 8198986 intergenic not near genes chr3R 8199070 intergenic not near genes chr3R_7_8195001 chr3R_8195001 RAL-646 682 chr3R 8218471 8218498 chr3R 8218565 8218573 6 90 5.0 3.0 4.0 1.2 102 chr3R 8218471 exon CG7800 + chr3R 8218522 exon CG7800 + chr3R 8218573 exon CG7800 + chr3R_6_8215001 chr3R_8215001 RAL-646 683 chr3R 8254464 8254484 chr3R 8254553 8254576 5 91 5.0 1.0 3.0 1.2 112 chr3R 8254464 intron mtg + chr3R 8254520 intron mtg + chr3R 8254576 intron mtg + chr3R_5_8250001 chr3R_8250001 RAL-646 684 chr3R 8273736 8273768 chr3R 8273822 8273855 7 87 1.5 1.5 1.5 2.8 119 chr3R 8273736 intergenic not near genes chr3R 8273796 intergenic not near genes chr3R 8273855 intergenic not near genes chr3R_7_8270001 chr3R_8270001 RAL-646 685 chr3R 8339242 8339247 chr3R 21907534 21907536 11 13568289 13.5 13.0 13.2 0.8 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-646 686 chr3R 8403007 8403034 chr3R 8412172 8412199 roo 10 9166 3.5 3.0 3.2 2.4 9192 chr3R 8403007 intron CG45263 - chr3R 8407603 intron CG45263 - chr3R 8412199 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-646 687 chr3R 8439511 8439533 chr3R 8439587 8439601 4 74 4.0 2.5 3.2 1.0 90 chr3R 8439511 intron CG45263 - chr3R 8439556 intron CG45263 - chr3R 8439601 intron CG45263 - chr3R_4_8435001 chr3R_8435001 RAL-646 688 chr3R 8707364 8707388 chr3R 8709795 8709829 jockey 15 2439 1.0 3.0 2.0 5.0 2465 chr3R 8707364 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709829 intergenic not near genes chr3R_15_8705001 chr3R_8705001 RAL-646 689 chr3R 8740260 8740271 chr3R 8740349 8740359 4 88 1.0 4.5 2.8 1.1 99 chr3R 8740260 intron CG9801 - chr3R 8740310 intron CG9801 - chr3R 8740359 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-646 690 chr3R 8743186 8743190 chr3R 8743268 8743272 5 82 5.5 2.5 4.0 1.0 86 chr3R 8743186 intron CG9801 - chr3R 8743229 intron CG9801 - chr3R 8743272 intron CG9801 - chr3R_5_8740001 chr3R_8740001 RAL-646 691 chr3R 8743192 8743221 chr3R 8743267 8743302 16 80 1.5 2.5 2.0 5.3 110 chr3R 8743192 intron CG9801 - chr3R 8743247 intron CG9801 - chr3R 8743302 intron CG9801 - chr3R_16_8740001 chr3R_8740001 RAL-646 692 chr3R 8751635 8751668 chr3R 8751733 8751762 6 90 0.5 5.0 2.8 1.6 127 chr3R 8751635 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R 8751698 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R 8751762 intron,3` UTR,5` UTR CG8223 +,CG11768 -,CG34135 - chr3R_6_8750001 chr3R_8750001 RAL-646 693 chr3R 9069489 9069518 chr3R 9069568 9069596 4 79 0.5 2.5 1.5 1.6 107 chr3R 9069489 3` UTR pum - chr3R 9069542 3` UTR pum - chr3R 9069596 3` UTR pum - chr3R_4_9065001 chr3R_9065001 RAL-646 694 chr3R 9083144 9083171 chr3R 9083229 9083256 5 81 0.5 2.5 1.5 2.0 112 chr3R 9083144 intron pum - chr3R 9083200 intron pum - chr3R 9083256 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-646 695 chr3R 9101854 9101868 chr3R 9101942 9101965 4 95 0.5 2.0 1.2 1.8 111 chr3R 9101854 intron pum - chr3R 9101910 intron pum - chr3R 9101965 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-646 696 chr3R 9108869 9108883 chr3R 9108945 9108957 5 75 0.5 0.0 0.2 4.2 88 chr3R 9108869 intron pum - chr3R 9108913 intron pum - chr3R 9108957 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-646 697 chr3R 9117520 9117530 chr3R 9117609 9117619 4 89 4.0 6.0 5.0 0.7 99 chr3R 9117520 intron pum - chr3R 9117570 intron pum - chr3R 9117619 intron pum - chr3R_4_9115001 chr3R_9115001 RAL-646 698 chr3R 9142792 9142819 chr3R 9142949 9142978 8 157 2.0 4.0 3.0 2.0 186 chr3R 9142792 intron pum - chr3R 9142885 intron pum - chr3R 9142978 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-646 699 chr3R 9189982 9190004 chr3R 9190073 9190095 4 91 2.0 1.5 1.8 1.4 113 chr3R 9189982 intron pum - chr3R 9190038 intron pum - chr3R 9190095 intron pum - chr3R_4_9190001 chr3R_9190001 RAL-646 700 chr3R 9227239 9227265 chr3R 9227319 9227346 7 81 1.5 2.0 1.8 2.5 107 chr3R 9227239 intron pum - chr3R 9227292 intron pum - chr3R 9227346 intron pum - chr3R_7_9225001 chr3R_9225001 RAL-646 701 chr3R 9278778 9278811 chr3R 9284038 9284069 Rt1a 6 5259 1.5 4.5 3.0 1.5 5291 chr3R 9278778 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284069 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-646 702 chr3R 9319580 9319609 chr3R 9320015 9320028 jockey 6 432 1.5 3.0 2.2 1.9 448 chr3R 9319580 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320028 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-646 703 chr3R 9620174 9620202 chr3R 9620304 9620332 13 129 1.0 1.5 1.2 5.9 158 chr3R 9620174 intron CG8312 + chr3R 9620253 intron CG8312 + chr3R 9620332 intron CG8312 + chr3R_13_9620001 chr3R_9620001 RAL-646 704 chr3R 9620954 9620956 chr3R 21907534 21907536 5 12286580 10.5 13.0 11.8 0.4 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-646 705 chr3R 9702570 9702604 chr3R 9702648 9702682 10 75 3.5 2.0 2.8 2.6 112 chr3R 9702570 intron Unc-115a - chr3R 9702626 intron Unc-115a - chr3R 9702682 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 RAL-646 706 chr3R 9829408 9829434 chr3R 9829493 9829519 5 84 0.0 0.5 0.2 4.2 111 chr3R 9829408 intron Teh1 - chr3R 9829464 intron Teh1 - chr3R 9829519 intron Teh1 - chr3R_5_9825001 chr3R_9825001 RAL-646 707 chr3R 9889556 9889564 chr3R 9889639 9889642 4 83 5.5 3.0 4.2 0.8 86 chr3R 9889556 intron Glut4EF + chr3R 9889599 intron Glut4EF + chr3R 9889642 intron Glut4EF + chr3R_4_9885001 chr3R_9885001 RAL-646 708 chr3R 9898613 9898627 chr3R 9898696 9898701 4 85 2.5 1.5 2.0 1.3 88 chr3R 9898613 intron Glut4EF + chr3R 9898657 intron Glut4EF + chr3R 9898701 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-646 709 chr3R 9926493 9926503 chr3R 9926552 9926581 7 68 1.0 5.0 3.0 1.8 88 chr3R 9926493 intron Glut4EF + chr3R 9926537 intron Glut4EF + chr3R 9926581 intron Glut4EF + chr3R_7_9925001 chr3R_9925001 RAL-646 710 chr3R 10099918 10099940 chr3R 10100002 10100024 4 84 1.5 4.0 2.8 1.1 106 chr3R 10099918 5` UTR CR43459 + chr3R 10099971 5` UTR CR43459 + chr3R 10100024 5` UTR,5` UTR CR43459 +,mir-277 + chr3R_4_10095001 chr3R_10095001 RAL-646 711 chr3R 10106547 10106570 chr3R 10106625 10106648 4 77 1.0 3.0 2.0 1.3 101 chr3R 10106547 intron Fmr1 - chr3R 10106598 intron Fmr1 - chr3R 10106648 intron Fmr1 - chr3R_4_10105001 chr3R_10105001 RAL-646 712 chr3R 10172437 10172467 chr3R 10172524 10172554 9 85 2.5 2.5 2.5 2.6 117 chr3R 10172437 intron CG12814 - chr3R 10172496 intron CG12814 - chr3R 10172554 intron CG12814 - chr3R_9_10170001 chr3R_10170001 RAL-646 713 chr3R 10192718 10192750 chr3R 10192900 10192911 7 172 3.0 1.0 2.0 2.3 193 chr3R 10192718 intron Syn + chr3R 10192814 intron Syn + chr3R 10192911 intron Syn + chr3R_7_10190001 chr3R_10190001 RAL-646 714 chr3R 10266758 10266776 chr3R 10266837 10266854 6 77 2.5 2.0 2.2 1.9 96 chr3R 10266758 intron CG43143 + chr3R 10266806 intron CG43143 + chr3R 10266854 intron CG43143 + chr3R_6_10265001 chr3R_10265001 RAL-646 715 chr3R 10470876 10470908 chr3R 10470965 10470967 7 81 1.0 1.0 1.0 3.5 91 chr3R 10470876 intergenic not near genes chr3R 10470922 intergenic not near genes chr3R 10470967 intergenic not near genes chr3R_7_10470001 chr3R_10470001 RAL-646 716 chr3R 10911001 10911029 chr3R 10911118 10911149 5 119 1.0 3.5 2.2 1.6 148 chr3R 10911001 intergenic not near genes chr3R 10911075 intergenic not near genes chr3R 10911149 intergenic not near genes chr3R_5_10910001 chr3R_10910001 RAL-646 717 chr3R 10919705 10919718 chr3R 10919783 10919796 5 77 1.5 3.0 2.2 1.6 91 chr3R 10919705 intergenic not near genes chr3R 10919750 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-646 718 chr3R 10920043 10920079 chr3R 10920121 10920157 6 78 0.5 2.5 1.5 2.4 114 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-646 719 chr3R 10954050 10954072 chr3R 10954154 10954177 6 102 1.0 1.5 1.2 2.7 127 chr3R 10954050 intergenic not near genes chr3R 10954114 intergenic not near genes chr3R 10954177 intergenic not near genes chr3R_6_10950001 chr3R_10950001 RAL-646 720 chr3R 10965390 10965409 chr3R 10965510 10965530 5 121 2.0 0.0 1.0 2.5 140 chr3R 10965390 intergenic not near genes chr3R 10965460 intergenic not near genes chr3R 10965530 intergenic not near genes chr3R_5_10965001 chr3R_10965001 RAL-646 721 chr3R 10982836 10982862 chr3R 10982916 10982949 8 80 2.0 1.5 1.8 2.9 113 chr3R 10982836 intron CG34114 + chr3R 10982892 intron CG34114 + chr3R 10982949 intron CG34114 + chr3R_8_10980001 chr3R_10980001 RAL-646 722 chr3R 11039439 11039458 chr3R 11039517 11039536 4 78 0.5 0.5 0.5 2.7 97 chr3R 11039439 intron CG34114 + chr3R 11039488 intron CG34114 + chr3R 11039536 intron CG34114 + chr3R_4_11035001 chr3R_11035001 RAL-646 723 chr3R 11046495 11046526 chr3R 11046574 11046605 6 76 2.5 2.0 2.2 1.9 110 chr3R 11046495 exon CG34114 + chr3R 11046550 intron CG34114 + chr3R 11046605 intron CG34114 + chr3R_6_11045001 chr3R_11045001 RAL-646 724 chr3R 11102324 11102355 chr3R 11102405 11102433 10 78 5.0 2.0 3.5 2.2 109 chr3R 11102324 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102433 intergenic not near genes chr3R_10_11100001 chr3R_11100001 RAL-646 725 chr3R 11187114 11187145 chr3R 11187805 11187835 8 692 22.0 13.5 17.8 0.4 721 chr3R 11187114 intergenic not near genes chr3R 11187474 intergenic not near genes chr3R 11187835 intergenic not near genes chr3R_8_11185001 chr3R_11185001 RAL-646 726 chr3R 11197368 11197397 chr3R 11197477 11197508 5 107 0.0 0.5 0.2 4.2 140 chr3R 11197368 intergenic CG18577 +,cu + chr3R 11197438 intergenic cu +,CG18577 + chr3R 11197508 intergenic cu +,CG18577 + chr3R_5_11195001 chr3R_11195001 RAL-646 727 chr3R 11233086 11233100 chr3R 11233156 11233174 5 72 3.5 5.5 4.5 0.9 88 chr3R 11233086 exon Arfip - chr3R 11233130 intron Arfip - chr3R 11233174 intron Arfip - chr3R_5_11230001 chr3R_11230001 RAL-646 728 chr3R 11268086 11268102 chr3R 11268165 11268181 5 78 1.5 2.0 1.8 1.8 95 chr3R 11268086 intergenic not near genes chr3R 11268134 intergenic not near genes chr3R 11268181 intergenic not near genes chr3R_5_11265001 chr3R_11265001 RAL-646 729 chr3R 11333531 11333555 chr3R 11333619 11333642 7 88 0.5 1.5 1.0 3.5 111 chr3R 11333531 intron pros + chr3R 11333586 intron pros + chr3R 11333642 intron pros + chr3R_7_11330001 chr3R_11330001 RAL-646 730 chr3R 11379247 11379269 chr3R 11388402 11388424 roo 4 9155 0.5 5.0 2.8 1.1 9177 chr3R 11379247 intron pros + chr3R 11383836 intron pros + chr3R 11388424 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-646 731 chr3R 11406290 11406320 chr3R 11406367 11406397 4 73 0.0 2.0 1.0 2.0 107 chr3R 11406290 3` UTR pros + chr3R 11406344 3` UTR pros + chr3R 11406397 3` UTR pros + chr3R_4_11405001 chr3R_11405001 RAL-646 732 chr3R 11480055 11480073 chr3R 11480230 11480264 6 181 2.5 5.0 3.8 1.2 209 chr3R 11480055 intergenic not near genes chr3R 11480160 intergenic not near genes chr3R 11480264 intergenic not near genes chr3R_6_11480001 chr3R_11480001 RAL-646 733 chr3R 11483455 11483477 chr3R 11483530 11483554 7 73 3.5 3.5 3.5 1.6 99 chr3R 11483455 intergenic not near genes chr3R 11483504 intergenic not near genes chr3R 11483554 intergenic not near genes chr3R_7_11480001 chr3R_11480001 RAL-646 734 chr3R 11501979 11501990 chr3R 11502065 11502080 7 89 0.5 3.5 2.0 2.3 101 chr3R 11501979 intron dpr5 + chr3R 11502030 intron dpr5 + chr3R 11502080 intron dpr5 + chr3R_7_11500001 chr3R_11500001 RAL-646 735 chr3R 11518826 11518836 chr3R 11518917 11518926 4 91 1.0 3.5 2.2 1.2 100 chr3R 11518826 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518926 intergenic not near genes chr3R_4_11515001 chr3R_11515001 RAL-646 736 chr3R 11583599 11583613 chr3R 11583675 11583690 4 76 0.5 4.0 2.2 1.2 91 chr3R 11583599 intron wkd + chr3R 11583644 intron wkd + chr3R 11583690 intron wkd + chr3R_4_11580001 chr3R_11580001 RAL-646 737 chr3R 11708630 11708652 chr3R 11708838 11708859 6 207 3.5 0.5 2.0 2.0 229 chr3R 11708630 intergenic not near genes chr3R 11708744 intergenic not near genes chr3R 11708859 intergenic not near genes chr3R_6_11705001 chr3R_11705001 RAL-646 738 chr3R 11710210 11710238 chr3R 11710288 11710316 5 78 3.5 2.0 2.8 1.3 106 chr3R 11710210 intergenic not near genes chr3R 11710263 intergenic not near genes chr3R 11710316 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-646 739 chr3R 11821007 11821042 chr3R 11821165 11821200 15 153 4.5 3.5 4.0 3.0 193 chr3R 11821007 exon CG6950 - chr3R 11821104 exon CG6950 - chr3R 11821200 exon CG6950 - chr3R_15_11820001 chr3R_11820001 RAL-646 740 chr3R 11874149 11874170 chr3R 11874269 11874289 4 120 0.5 0.5 0.5 2.7 140 chr3R 11874149 intergenic not near genes chr3R 11874219 intergenic not near genes chr3R 11874289 intergenic not near genes chr3R_4_11870001 chr3R_11870001 RAL-646 741 chr3R 12022885 12022899 chr3R 12025062 12025076 pogo 4 2177 1.0 2.0 1.5 1.6 2191 chr3R 12022885 intergenic not near genes chr3R 12023980 intergenic not near genes chr3R 12025076 intergenic not near genes chr3R_4_12020001 chr3R_12020001 RAL-646 742 chr3R 12029928 12029957 chr3R 12030015 12030044 5 85 0.5 1.0 0.8 2.8 116 chr3R 12029928 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029986 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030044 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_5_12025001 chr3R_12025001 RAL-646 743 chr3R 12059404 12059432 chr3R 12060878 12060880 5 1467 7.0 0.5 3.8 1.0 1476 chr3R 12059404 intergenic not near genes chr3R 12060142 intergenic not near genes chr3R 12060880 intergenic CG14740 - chr3R_5_12060001 chr3R_12060001 RAL-646 744 chr3R 12119875 12119907 chr3R 12119972 12119994 5 91 2.5 1.5 2.0 1.7 119 chr3R 12119875 intergenic not near genes chr3R 12119934 intergenic not near genes chr3R 12119994 intergenic not near genes chr3R_5_12115001 chr3R_12115001 RAL-646 745 chr3R 12247148 12247171 chr3R 12247233 12247240 4 81 1.0 1.0 1.0 2.0 92 chr3R 12247148 intergenic not near genes chr3R 12247194 intergenic not near genes chr3R 12247240 intergenic not near genes chr3R_4_12245001 chr3R_12245001 RAL-646 746 chr3R 12333803 12333834 chr3R 12333899 12333930 4 95 2.5 1.5 2.0 1.3 127 chr3R 12333803 intergenic not near genes chr3R 12333866 intergenic not near genes chr3R 12333930 intergenic not near genes chr3R_4_12330001 chr3R_12330001 RAL-646 747 chr3R 12441065 12441099 chr3R 12441146 12441176 14 73 2.0 4.0 3.0 3.5 111 chr3R 12441065 intron Desat1 + chr3R 12441120 intron Desat1 + chr3R 12441176 intron Desat1 + chr3R_14_12440001 chr3R_12440001 RAL-646 748 chr3R 12522359 12522384 chr3R 12522443 12522470 5 85 3.5 3.5 3.5 1.1 111 chr3R 12522359 5` UTR Octbeta3R - chr3R 12522414 5` UTR Octbeta3R - chr3R 12522470 5` UTR Octbeta3R - chr3R_5_12520001 chr3R_12520001 RAL-646 749 chr3R 12539578 12539596 chr3R 12539680 12539682 5 99 3.0 1.5 2.2 1.6 104 chr3R 12539578 intron Octbeta3R - chr3R 12539630 intron Octbeta3R - chr3R 12539682 intron Octbeta3R - chr3R_5_12535001 chr3R_12535001 RAL-646 750 chr3R 12568438 12568471 chr3R 12568514 12568545 12 75 2.0 1.0 1.5 4.8 107 chr3R 12568438 intron Octbeta2R - chr3R 12568492 intron Octbeta2R - chr3R 12568545 intron Octbeta2R - chr3R_12_12565001 chr3R_12565001 RAL-646 751 chr3R 12570460 12570465 chr3R 12570952 12570964 4 497 3.5 4.5 4.0 0.8 504 chr3R 12570460 intron Octbeta2R - chr3R 12570712 intron Octbeta2R - chr3R 12570964 intron Octbeta2R - chr3R_4_12570001 chr3R_12570001 RAL-646 752 chr3R 12574686 12574687 chr3R 12575364 12575376 7 679 5.0 9.0 7.0 0.9 690 chr3R 12574686 intron Octbeta2R - chr3R 12575031 intron Octbeta2R - chr3R 12575376 intron Octbeta2R - chr3R_7_12575001 chr3R_12575001 RAL-646 753 chr3R 12606699 12606731 chr3R 12606783 12606814 14 81 3.5 4.0 3.8 2.9 115 chr3R 12606699 intergenic not near genes chr3R 12606756 intergenic not near genes chr3R 12606814 intergenic not near genes chr3R_14_12605001 chr3R_12605001 RAL-646 754 chr3R 12619129 12619153 chr3R 12619208 12619232 5 77 1.5 1.0 1.2 2.3 103 chr3R 12619129 intron CR44942 - chr3R 12619180 intron CR44942 - chr3R 12619232 intron CR44942 - chr3R_5_12615001 chr3R_12615001 RAL-646 755 chr3R 12669545 12669561 chr3R 12669630 12669645 4 85 3.5 4.5 4.0 0.8 100 chr3R 12669545 intron CG14395 + chr3R 12669595 intron CG14395 + chr3R 12669645 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-646 756 chr3R 12748961 12748991 chr3R 12749054 12749084 5 93 0.0 2.0 1.0 2.5 123 chr3R 12748961 intron beat-Vc - chr3R 12749022 intron beat-Vc - chr3R 12749084 intron beat-Vc - chr3R_5_12745001 chr3R_12745001 RAL-646 757 chr3R 12810022 12810046 chr3R 12810092 12810123 5 74 4.0 3.0 3.5 1.1 101 chr3R 12810022 intergenic not near genes chr3R 12810072 intergenic not near genes chr3R 12810123 intergenic not near genes chr3R_5_12810001 chr3R_12810001 RAL-646 758 chr3R 12818229 12818244 chr3R 12818650 12818657 4 418 0.0 4.0 2.0 1.3 428 chr3R 12818229 intergenic not near genes chr3R 12818443 intergenic not near genes chr3R 12818657 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-646 759 chr3R 12819047 12819052 chr3R 12819115 12819135 4 76 3.5 1.0 2.2 1.2 88 chr3R 12819047 intergenic not near genes chr3R 12819091 intergenic not near genes chr3R 12819135 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-646 760 chr3R 12920166 12920185 chr3R 12925359 12925388 copia 4 5198 1.5 1.5 1.5 1.6 5222 chr3R 12920166 intron beat-Vb + chr3R 12922777 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-646 761 chr3R 12931216 12931245 chr3R 12931293 12931302 11 73 1.5 0.5 1.0 5.5 86 chr3R 12931216 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931259 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931302 intron,3` UTR beat-Vb +,CR44236 - chr3R_11_12930001 chr3R_12930001 RAL-646 762 chr3R 12943976 12944006 chr3R 12944063 12944093 4 87 0.5 0.5 0.5 2.7 117 chr3R 12943976 intergenic not near genes chr3R 12944034 intergenic not near genes chr3R 12944093 intergenic not near genes chr3R_4_12940001 chr3R_12940001 RAL-646 763 chr3R 12947532 12947560 chr3R 12947612 12947624 6 74 4.0 2.0 3.0 1.5 92 chr3R 12947532 intergenic not near genes chr3R 12947578 intergenic not near genes chr3R 12947624 intergenic not near genes chr3R_6_12945001 chr3R_12945001 RAL-646 764 chr3R 13013217 13013238 chr3R 13013295 13013320 4 80 0.5 0.5 0.5 2.7 103 chr3R 13013217 intron CtBP + chr3R 13013268 intron CtBP + chr3R 13013320 intron CtBP + chr3R_4_13010001 chr3R_13010001 RAL-646 765 chr3R 13015749 13015773 chr3R 13015835 13015860 9 85 1.5 3.5 2.5 2.6 111 chr3R 13015749 intron CtBP + chr3R 13015804 intron CtBP + chr3R 13015860 intron CtBP + chr3R_9_13015001 chr3R_13015001 RAL-646 766 chr3R 13042981 13043013 chr3R 13043213 13043245 9 233 3.5 1.5 2.5 2.6 264 chr3R 13042981 exon CG11670 + chr3R 13043113 intron CG11670 + chr3R 13043245 intron CG11670 + chr3R_9_13040001 chr3R_13040001 RAL-646 767 chr3R 13120783 13120800 chr3R 13120854 13120858 7 71 3.5 6.0 4.8 1.2 75 chr3R 13120783 intron timeout + chr3R 13120820 intron timeout + chr3R 13120858 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-646 768 chr3R 13135832 13135848 chr3R 13138007 13138022 pogo 4 2175 1.0 0.5 0.8 2.2 2190 chr3R 13135832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136927 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138022 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-646 769 chr3R 13143057 13143062 chr3R 13148615 13148633 mdg3 4 5569 2.0 4.5 3.2 1.0 5576 chr3R 13143057 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145845 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148633 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-646 770 chr3R 13182471 13182499 chr3R 13182548 13182577 9 71 2.0 1.0 1.5 3.6 106 chr3R 13182471 intergenic CG8138 + chr3R 13182524 intergenic CG8138 + chr3R 13182577 intergenic CG8138 + chr3R_9_13180001 chr3R_13180001 RAL-646 771 chr3R 13378837 13378870 chr3R 13378928 13378961 6 90 1.0 4.0 2.5 1.7 124 chr3R 13378837 intron CG9813 - chr3R 13378899 intron CG9813 - chr3R 13378961 intron CG9813 - chr3R_6_13375001 chr3R_13375001 RAL-646 772 chr3R 13552302 13552323 chr3R 13552393 13552413 6 88 0.5 4.5 2.5 1.7 111 chr3R 13552302 intergenic not near genes chr3R 13552358 intergenic not near genes chr3R 13552413 intergenic not near genes chr3R_6_13550001 chr3R_13550001 RAL-646 773 chr3R 13581156 13581189 chr3R 13581557 13581575 5 393 2.0 3.0 2.5 1.4 419 chr3R 13581156 intergenic not near genes chr3R 13581366 intergenic not near genes chr3R 13581575 intergenic not near genes chr3R_5_13580001 chr3R_13580001 RAL-646 774 chr3R 13714521 13714549 chr3R 13714660 13714688 4 139 0.0 0.5 0.2 3.3 167 chr3R 13714521 intergenic CR34044 - chr3R 13714604 intergenic CR34044 - chr3R 13714688 intergenic CR34044 - chr3R_4_13710001 chr3R_13710001 RAL-646 775 chr3R 13872176 13872207 chr3R 13872255 13872285 9 76 2.0 3.5 2.8 2.4 109 chr3R 13872176 intron E5 - chr3R 13872230 intron E5 - chr3R 13872285 intron E5 - chr3R_9_13870001 chr3R_13870001 RAL-646 776 chr3R 13981238 13981259 chr3R 13981348 13981369 6 108 1.5 1.0 1.2 2.7 131 chr3R 13981238 intron rdx - chr3R 13981304 intron rdx - chr3R 13981369 intron rdx - chr3R_6_13980001 chr3R_13980001 RAL-646 777 chr3R 14117445 14117469 chr3R 14117521 14117544 4 74 1.5 1.0 1.2 1.8 99 chr3R 14117445 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117544 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-646 778 chr3R 14258490 14258511 chr3R 14258573 14258595 5 84 1.0 4.0 2.5 1.4 105 chr3R 14258490 intron Aats-met - chr3R 14258542 intron Aats-met - chr3R 14258595 intron Aats-met - chr3R_5_14255001 chr3R_14255001 RAL-646 779 chr3R 14281388 14281403 chr3R 14281467 14281482 6 79 2.5 2.5 2.5 1.7 94 chr3R 14281388 intron trx - chr3R 14281435 intron trx - chr3R 14281482 intron trx - chr3R_6_14280001 chr3R_14280001 RAL-646 780 chr3R 14527402 14527413 chr3R 14527479 14527490 6 77 4.0 3.0 3.5 1.3 88 chr3R 14527402 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527490 intron Pde6 - chr3R_6_14525001 chr3R_14525001 RAL-646 781 chr3R 14612444 14612453 chr3R 14612564 14612573 4 118 3.0 2.5 2.8 1.1 129 chr3R 14612444 intron CG14853 + chr3R 14612508 intron CG14853 + chr3R 14612573 intron CG14853 + chr3R_4_14610001 chr3R_14610001 RAL-646 782 chr3R 14662314 14662339 chr3R 14662395 14662420 6 81 3.5 2.0 2.8 1.6 106 chr3R 14662314 exon Rad17 - chr3R 14662367 intron Rad17 - chr3R 14662420 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-646 783 chr3R 14671801 14671830 chr3R 14671911 14671928 13 106 7.5 3.5 5.5 2.0 127 chr3R 14671801 exon Meltrin - chr3R 14671864 intron Meltrin - chr3R 14671928 intron Meltrin - chr3R_13_14670001 chr3R_14670001 RAL-646 784 chr3R 14687280 14687294 chr3R 14687371 14687385 4 91 4.0 0.0 2.0 1.3 105 chr3R 14687280 intron Meltrin - chr3R 14687332 intron Meltrin - chr3R 14687385 intron Meltrin - chr3R_4_14685001 chr3R_14685001 RAL-646 785 chr3R 14704384 14704415 chr3R 14704461 14704492 5 77 1.5 2.5 2.0 1.7 108 chr3R 14704384 intron kibra - chr3R 14704438 intron kibra - chr3R 14704492 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-646 786 chr3R 14779063 14779096 chr3R 14779143 14779175 6 80 3.0 2.0 2.5 1.7 112 chr3R 14779063 intron jvl + chr3R 14779119 intron jvl + chr3R 14779175 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-646 787 chr3R 14847034 14847071 chr3R 14847121 14847150 10 82 2.0 2.0 2.0 3.3 116 chr3R 14847034 intron btsz - chr3R 14847092 intron btsz - chr3R 14847150 intron btsz - chr3R_10_14845001 chr3R_14845001 RAL-646 788 chr3R 15041423 15041456 chr3R 15045191 15045224 Doc 5 3768 0.5 2.0 1.2 2.3 3801 chr3R 15041423 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045224 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-646 789 chr3R 15048378 15048389 chr3R 15048458 15048470 4 80 1.0 2.0 1.5 1.6 92 chr3R 15048378 intergenic not near genes chr3R 15048424 intergenic not near genes chr3R 15048470 intergenic not near genes chr3R_4_15045001 chr3R_15045001 RAL-646 790 chr3R 15054106 15054119 chr3R 15054223 15054230 4 114 4.0 2.0 3.0 1.0 124 chr3R 15054106 intergenic not near genes chr3R 15054168 intergenic not near genes chr3R 15054230 intergenic not near genes chr3R_4_15050001 chr3R_15050001 RAL-646 791 chr3R 15075972 15075986 chr3R 15076058 15076072 4 86 1.5 0.0 0.8 2.2 100 chr3R 15075972 intron dpr9 - chr3R 15076022 intron dpr9 - chr3R 15076072 intron dpr9 - chr3R_4_15075001 chr3R_15075001 RAL-646 792 chr3R 15087777 15087798 chr3R 15087862 15087883 5 83 2.5 6.0 4.2 1.0 106 chr3R 15087777 intron CG6966 - chr3R 15087830 intron CG6966 - chr3R 15087883 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-646 793 chr3R 15113001 15113019 chr3R 15113100 15113118 4 98 1.5 3.0 2.2 1.2 117 chr3R 15113001 intron CG42788 - chr3R 15113060 intron CG42788 - chr3R 15113118 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-646 794 chr3R 15127788 15127807 chr3R 15127868 15127887 4 80 1.0 1.0 1.0 2.0 99 chr3R 15127788 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127887 intron CG42788 - chr3R_4_15125001 chr3R_15125001 RAL-646 795 chr3R 15132062 15132086 chr3R 15135120 15135146 Juan 6 3059 2.5 1.5 2.0 2.0 3084 chr3R 15132062 intergenic CG42788 - chr3R 15133604 intergenic not near genes chr3R 15135146 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-646 796 chr3R 15167806 15167834 chr3R 15167963 15167987 9 155 3.0 3.0 3.0 2.2 181 chr3R 15167806 intron Gyc88E + chr3R 15167896 intron Gyc88E + chr3R 15167987 intron Gyc88E + chr3R_9_15165001 chr3R_15165001 RAL-646 797 chr3R 15452275 15452306 chr3R 15452350 15452383 7 75 1.5 2.5 2.0 2.3 108 chr3R 15452275 intron AdamTS-A - chr3R 15452329 intron AdamTS-A - chr3R 15452383 intron AdamTS-A - chr3R_7_15450001 chr3R_15450001 RAL-646 798 chr3R 15531634 15531658 chr3R 15531806 15531831 4 172 0.5 1.5 1.0 2.0 197 chr3R 15531634 intergenic CG31296 - chr3R 15531732 intergenic CG31296 -,CG18522 - chr3R 15531831 intergenic CG18522 -,CG31296 - chr3R_4_15530001 chr3R_15530001 RAL-646 799 chr3R 15573780 15573796 chr3R 15573891 15573907 4 111 4.0 1.5 2.8 1.1 127 chr3R 15573780 intergenic not near genes chr3R 15573844 intergenic not near genes chr3R 15573907 intergenic not near genes chr3R_4_15570001 chr3R_15570001 RAL-646 800 chr3R 15601165 15601188 chr3R 15608687 15608698 412 6 7520 6.0 1.0 3.5 1.3 7533 chr3R 15601165 intergenic not near genes chr3R 15604932 intergenic not near genes chr3R 15608698 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-646 801 chr3R 15676557 15676580 chr3R 15676632 15676659 8 76 0.5 1.5 1.0 4.0 102 chr3R 15676557 intron pxb + chr3R 15676608 intron pxb + chr3R 15676659 intron pxb + chr3R_8_15675001 chr3R_15675001 RAL-646 802 chr3R 15697441 15697470 chr3R 15697532 15697562 7 90 2.0 1.0 1.5 2.8 121 chr3R 15697441 5` UTR CR45635 + chr3R 15697502 5` UTR CR45635 + chr3R 15697562 5` UTR CR45635 + chr3R_7_15695001 chr3R_15695001 RAL-646 803 chr3R 15716843 15716874 chr3R 15716941 15716954 7 96 1.5 0.5 1.0 3.5 111 chr3R 15716843 intergenic CG31294 - chr3R 15716898 intergenic CG31294 - chr3R 15716954 intergenic CG31294 - chr3R_7_15715001 chr3R_15715001 RAL-646 804 chr3R 15901151 15901183 chr3R 15901246 15901276 9 95 1.5 1.5 1.5 3.6 125 chr3R 15901151 intron glob1 - chr3R 15901214 intron glob1 - chr3R 15901276 intron glob1 - chr3R_9_15900001 chr3R_15900001 RAL-646 805 chr3R 15947134 15947157 chr3R 15947216 15947239 5 79 2.0 1.5 1.8 1.8 105 chr3R 15947134 intron Sap47 + chr3R 15947186 intron Sap47 + chr3R 15947239 intron Sap47 + chr3R_5_15945001 chr3R_15945001 RAL-646 806 chr3R 16073440 16073467 chr3R 16073544 16073570 5 104 2.0 0.0 1.0 2.5 130 chr3R 16073440 intron Mhcl - chr3R 16073505 intron Mhcl - chr3R 16073570 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-646 807 chr3R 16223107 16223121 chr3R 16223303 16223317 4 195 2.5 2.5 2.5 1.1 210 chr3R 16223107 intergenic CR45643 + chr3R 16223212 intergenic CR45643 + chr3R 16223317 intergenic CR45643 + chr3R_4_16220001 chr3R_16220001 RAL-646 808 chr3R 16230627 16230633 chr3R 16230689 16230692 4 70 2.5 2.0 2.2 1.2 65 chr3R 16230627 intron tara + chr3R 16230660 intron tara + chr3R 16230692 intron tara + chr3R_4_16230001 chr3R_16230001 RAL-646 809 chr3R 16298888 16298898 chr3R 16298970 16298983 4 84 1.0 1.0 1.0 2.0 95 chr3R 16298888 intron gish + chr3R 16298936 intron gish + chr3R 16298983 intron gish + chr3R_4_16295001 chr3R_16295001 RAL-646 810 chr3R 16472572 16472605 chr3R 16472647 16472662 7 71 4.0 3.5 3.8 1.5 90 chr3R 16472572 intergenic Gyc-89Da + chr3R 16472617 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-646 811 chr3R 16756321 16756352 chr3R 16762511 16762543 diver 9 6189 0.5 1.0 0.8 5.0 6222 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762543 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-646 812 chr3R 16803465 16803491 chr3R 16803539 16803568 4 71 2.0 3.5 2.8 1.1 103 chr3R 16803465 intergenic not near genes chr3R 16803516 intergenic not near genes chr3R 16803568 intergenic not near genes chr3R_4_16800001 chr3R_16800001 RAL-646 813 chr3R 16900409 16900430 chr3R 16900792 16900812 5 382 1.0 2.0 1.5 2.0 403 chr3R 16900409 intron iab-8 - chr3R 16900610 intron iab-8 - chr3R 16900812 intron iab-8 - chr3R_5_16900001 chr3R_16900001 RAL-646 814 chr3R 16936949 16936969 chr3R 16937045 16937065 7 96 1.5 0.5 1.0 3.5 116 chr3R 16936949 intron Abd-B - chr3R 16937007 intron Abd-B - chr3R 16937065 intron Abd-B - chr3R_7_16935001 chr3R_16935001 RAL-646 815 chr3R 17082098 17082133 chr3R 17082176 17082212 8 73 1.5 0.5 1.0 4.0 114 chr3R 17082098 intron kuk + chr3R 17082155 intron kuk + chr3R 17082212 intron kuk + chr3R_8_17080001 chr3R_17080001 RAL-646 816 chr3R 17227313 17227314 chr3R 26242181 26242192 4 9014874 7.5 9.0 8.2 0.4 9014879 chr3R 17227313 intergenic not near genes chr3R 21734752 intergenic not near genes chr3R 26242192 intron CR42745 + chr3R_4_21730001 chr3R_21730001 RAL-646 817 chr3R 17313392 17313399 chr3R 17313505 17313509 5 117 2.0 1.0 1.5 2.0 117 chr3R 17313392 intergenic not near genes chr3R 17313450 intergenic not near genes chr3R 17313509 intergenic not near genes chr3R_5_17310001 chr3R_17310001 RAL-646 818 chr3R 17329867 17329879 chr3R 17329967 17329979 5 99 7.0 1.5 4.2 1.0 112 chr3R 17329867 intron beat-IIa - chr3R 17329923 intron beat-IIa - chr3R 17329979 intron beat-IIa - chr3R_5_17325001 chr3R_17325001 RAL-646 819 chr3R 17346691 17346706 chr3R 17348254 17348269 F-element 4 1563 0.5 2.5 1.5 1.6 1578 chr3R 17346691 intron beat-IIa - chr3R 17347480 intron beat-IIa - chr3R 17348269 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-646 820 chr3R 17591314 17591320 chr3R 17591718 17591728 F-element 4 408 2.0 0.5 1.2 1.8 414 chr3R 17591314 intergenic not near genes chr3R 17591521 intergenic not near genes chr3R 17591728 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-646 821 chr3R 17702557 17702586 chr3R 17702672 17702701 4 115 1.5 2.0 1.8 1.4 144 chr3R 17702557 intron osa - chr3R 17702629 intron osa - chr3R 17702701 intron osa - chr3R_4_17700001 chr3R_17700001 RAL-646 822 chr3R 17711763 17711780 chr3R 17711842 17711845 11 85 2.0 3.0 2.5 3.1 82 chr3R 17711763 intron osa - chr3R 17711804 intron osa - chr3R 17711845 intron osa - chr3R_11_17710001 chr3R_17710001 RAL-646 823 chr3R 17743219 17743243 chr3R 17743300 17743324 6 81 0.0 0.0 0.0 6.0 105 chr3R 17743219 intron TyrRII + chr3R 17743272 intron TyrRII + chr3R 17743324 intron TyrRII + chr3R_6_17740001 chr3R_17740001 RAL-646 824 chr3R 17818885 17818906 chr3R 17818964 17818968 4 74 1.5 0.0 0.8 2.2 83 chr3R 17818885 intron tinc + chr3R 17818926 intron tinc + chr3R 17818968 intron tinc + chr3R_4_17815001 chr3R_17815001 RAL-646 825 chr3R 17842076 17842082 chr3R 17842371 17842388 4 303 3.0 0.0 1.5 1.6 312 chr3R 17842076 intron tinc + chr3R 17842232 intron tinc + chr3R 17842388 intron tinc + chr3R_4_17840001 chr3R_17840001 RAL-646 826 chr3R 17912832 17912857 chr3R 17912901 17912938 6 79 2.0 0.0 1.0 3.0 106 chr3R 17912832 intron Rim - chr3R 17912885 intron Rim - chr3R 17912938 intron Rim - chr3R_6_17910001 chr3R_17910001 RAL-646 827 chr3R 17925859 17925887 chr3R 17927326 17927354 hobo 8 1466 4.0 5.0 4.5 1.5 1495 chr3R 17925859 intron cpo + chr3R 17926606 intron cpo + chr3R 17927354 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-646 828 chr3R 18109271 18109304 chr3R 18109361 18109393 7 90 1.0 1.0 1.0 3.5 122 chr3R 18109271 intron sr + chr3R 18109332 intron sr + chr3R 18109393 intron sr + chr3R_7_18105001 chr3R_18105001 RAL-646 829 chr3R 18235411 18235440 chr3R 18235493 18235510 4 79 0.5 0.0 0.2 3.3 99 chr3R 18235411 intergenic not near genes chr3R 18235460 intergenic not near genes chr3R 18235510 intergenic not near genes chr3R_4_18235001 chr3R_18235001 RAL-646 830 chr3R 18306997 18307021 chr3R 18307088 18307107 7 90 1.5 0.0 0.8 3.9 110 chr3R 18306997 exon PKD - chr3R 18307052 intron PKD - chr3R 18307107 intron PKD - chr3R_7_18305001 chr3R_18305001 RAL-646 831 chr3R 18374669 18374678 chr3R 18374772 18374781 4 103 0.0 2.0 1.0 2.0 112 chr3R 18374669 5` UTR CR44946 + chr3R 18374725 5` UTR CR44946 + chr3R 18374781 5` UTR CR44946 + chr3R_4_18370001 chr3R_18370001 RAL-646 832 chr3R 18730029 18730037 chr3R 18730105 18730113 5 76 2.5 2.0 2.2 1.6 84 chr3R 18730029 intron Cha + chr3R 18730071 intron Cha + chr3R 18730113 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-646 833 chr3R 18739679 18739702 chr3R 18739747 18739783 17 71 2.0 1.5 1.8 6.1 104 chr3R 18739679 intron Mekk1 - chr3R 18739731 intron Mekk1 - chr3R 18739783 intron Mekk1 - chr3R_17_18735001 chr3R_18735001 RAL-646 834 chr3R 18788748 18788774 chr3R 18788821 18788851 6 74 0.5 1.5 1.0 3.0 103 chr3R 18788748 intron CG7720 - chr3R 18788800 intron CG7720 - chr3R 18788851 intron CG7720 - chr3R_6_18785001 chr3R_18785001 RAL-646 835 chr3R 18808500 18808506 chr3R 18808554 18808581 4 66 2.0 3.5 2.8 1.1 81 chr3R 18808500 intron CG18208 - chr3R 18808540 intron CG18208 - chr3R 18808581 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-646 836 chr3R 18826328 18826341 chr3R 18826680 18826698 6 356 3.0 3.0 3.0 1.5 370 chr3R 18826328 intron CG18208 - chr3R 18826513 intron CG18208 - chr3R 18826698 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-646 837 chr3R 18888103 18888118 chr3R 18888188 18888203 4 84 1.0 1.5 1.2 1.8 100 chr3R 18888103 intergenic not near genes chr3R 18888153 intergenic not near genes chr3R 18888203 intergenic not near genes chr3R_4_18885001 chr3R_18885001 RAL-646 838 chr3R 19008380 19008404 chr3R 19008463 19008482 4 82 0.0 4.5 2.2 1.2 102 chr3R 19008380 intron gukh + chr3R 19008431 intron gukh + chr3R 19008482 intron gukh + chr3R_4_19005001 chr3R_19005001 RAL-646 839 chr3R 19033935 19033961 chr3R 19034007 19034038 7 75 0.5 4.5 2.5 2.0 103 chr3R 19033935 intron CG6026 + chr3R 19033986 intron CG6026 + chr3R 19034038 intron CG6026 + chr3R_7_19030001 chr3R_19030001 RAL-646 840 chr3R 19226713 19226732 chr3R 19230884 19230903 5 4172 5.0 18.5 11.8 0.4 4190 chr3R 19226713 intergenic vib -,CG11703 - chr3R 19228808 exon CG5250 - chr3R 19230903 exon unc79 - chr3R_5_19225001 chr3R_19225001 RAL-646 841 chr3R 19253309 19253324 chr3R 19253392 19253423 4 91 0.5 2.5 1.5 1.6 114 chr3R 19253309 intergenic not near genes chr3R 19253366 intergenic not near genes chr3R 19253423 intergenic not near genes chr3R_4_19250001 chr3R_19250001 RAL-646 842 chr3R 19457915 19457918 chr3R 21907534 21907534 5 2449619 1.0 13.0 7.0 0.6 2449619 chr3R 19457915 3` UTR CG31221 + chr3R 20682724 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-646 843 chr3R 19604681 19604704 chr3R 19604812 19604837 7 132 2.5 1.5 2.0 2.3 156 chr3R 19604681 exon CG7342 + chr3R 19604759 intron CG7342 + chr3R 19604837 intron CG7342 + chr3R_7_19600001 chr3R_19600001 RAL-646 844 chr3R 19611995 19612012 chr3R 19616028 19616054 8 4034 16.5 4.5 10.5 0.7 4059 chr3R 19611995 exon CG17752 + chr3R 19614024 exon CG16727 + chr3R 19616054 3` UTR CG6231 - chr3R_8_19610001 chr3R_19610001 RAL-646 845 chr3R 19657696 19657714 chr3R 19657771 19657806 5 87 1.0 1.5 1.2 2.3 110 chr3R 19657696 5` UTR CG6184 - chr3R 19657751 5` UTR CG6184 - chr3R 19657806 5` UTR CG6184 - chr3R_5_19655001 chr3R_19655001 RAL-646 846 chr3R 19669095 19669121 chr3R 19669175 19669196 6 70 4.0 4.0 4.0 1.2 101 chr3R 19669095 exon CG7432 + chr3R 19669146 exon CG7432 + chr3R 19669196 exon CG7432 + chr3R_6_19665001 chr3R_19665001 RAL-646 847 chr3R 19675343 19675365 chr3R 19675493 19675515 7 149 0.0 2.5 1.2 3.2 172 chr3R 19675343 intron Naam + chr3R 19675429 intron Naam + chr3R 19675515 intron Naam + chr3R_7_19675001 chr3R_19675001 RAL-646 848 chr3R 19702325 19702354 chr3R 19702404 19702434 4 78 4.5 4.0 4.2 0.8 109 chr3R 19702325 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702434 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-646 849 chr3R 19894811 19894831 chr3R 19894887 19894907 6 76 1.0 1.0 1.0 3.0 96 chr3R 19894811 intron CG4733 + chr3R 19894859 intron CG4733 + chr3R 19894907 intron CG4733 + chr3R_6_19890001 chr3R_19890001 RAL-646 850 chr3R 20059472 20059500 chr3R 20059549 20059576 7 79 1.0 1.0 1.0 3.5 104 chr3R 20059472 intron CG4390 - chr3R 20059524 intron CG4390 - chr3R 20059576 exon CG4390 - chr3R_7_20055001 chr3R_20055001 RAL-646 851 chr3R 20109537 20109571 chr3R 20114743 20114777 copia 8 5206 1.0 0.5 0.8 4.4 5240 chr3R 20109537 intergenic not near genes chr3R 20112157 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_8_20110001 chr3R_20110001 RAL-646 852 chr3R 20167792 20167819 chr3R 20167870 20167897 6 78 0.0 2.0 1.0 3.0 105 chr3R 20167792 intergenic not near genes chr3R 20167844 intergenic not near genes chr3R 20167897 intergenic not near genes chr3R_6_20165001 chr3R_20165001 RAL-646 853 chr3R 20388005 20388031 chr3R 20388088 20388114 12 79 2.0 3.0 2.5 3.4 109 chr3R 20388005 intron Gfrl - chr3R 20388060 intron Gfrl - chr3R 20388114 intron Gfrl - chr3R_12_20385001 chr3R_20385001 RAL-646 854 chr3R 20733974 20733987 chr3R 20734691 20734703 4 717 2.0 2.0 2.0 1.3 729 chr3R 20733974 intergenic not near genes chr3R 20734338 intergenic not near genes chr3R 20734703 intergenic not near genes chr3R_4_20730001 chr3R_20730001 RAL-646 855 chr3R 20768722 20768746 chr3R 20768806 20768830 5 82 1.0 1.0 1.0 2.5 108 chr3R 20768722 intron Syp + chr3R 20768776 intron Syp + chr3R 20768830 intron Syp + chr3R_5_20765001 chr3R_20765001 RAL-646 856 chr3R 20901458 20901671 chr3R 20901519 20901771 10 92 3.5 4.0 3.8 2.1 313 chr3R 20901458 intergenic CG5621 + chr3R 20901614 intergenic CG5621 + chr3R 20901771 intergenic CG5621 + chr3R_10_20900001 chr3R_20900001 RAL-646 857 chr3R 20940893 20940925 chr3R 20941050 20941081 5 153 2.5 0.5 1.5 2.0 188 chr3R 20940893 intron CG31191 - chr3R 20940987 intron CG31191 - chr3R 20941081 intron CG31191 - chr3R_5_20940001 chr3R_20940001 RAL-646 858 chr3R 21000997 21001026 chr3R 21001071 21001076 5 59 3.5 2.0 2.8 1.3 79 chr3R 21000997 intron Calx + chr3R 21001036 intron Calx + chr3R 21001076 intron Calx + chr3R_5_21000001 chr3R_21000001 RAL-646 859 chr3R 21141673 21141705 chr3R 21150154 21150170 Tirant 4 8468 2.5 3.0 2.8 1.1 8497 chr3R 21141673 intron SNF4Agamma + chr3R 21145922 intron SNF4Agamma + chr3R 21150170 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-646 860 chr3R 21236473 21236504 chr3R 21236546 21236581 7 75 1.0 1.0 1.0 3.5 108 chr3R 21236473 intron e - chr3R 21236527 intron e - chr3R 21236581 intron e - chr3R_7_21235001 chr3R_21235001 RAL-646 861 chr3R 21336260 21336278 chr3R 21336523 21336552 4 269 2.0 4.0 3.0 1.0 292 chr3R 21336260 intron CG16791 - chr3R 21336406 intron CG16791 - chr3R 21336552 intron CG16791 - chr3R_4_21335001 chr3R_21335001 RAL-646 862 chr3R 21448634 21448666 chr3R 21448713 21448737 4 77 1.5 2.0 1.8 1.4 103 chr3R 21448634 intergenic not near genes chr3R 21448686 intergenic not near genes chr3R 21448737 intergenic not near genes chr3R_4_21445001 chr3R_21445001 RAL-646 863 chr3R 21586419 21586453 chr3R 21586503 21586537 7 79 2.5 3.5 3.0 1.8 118 chr3R 21586419 intron InR - chr3R 21586478 intron InR - chr3R 21586537 intron InR - chr3R_7_21585001 chr3R_21585001 RAL-646 864 chr3R 21594816 21594843 chr3R 21594897 21594924 9 80 2.5 2.0 2.2 2.8 108 chr3R 21594816 intron,5` UTR InR -,CR43653 + chr3R 21594870 intron InR - chr3R 21594924 intron InR - chr3R_9_21590001 chr3R_21590001 RAL-646 865 chr3R 21609028 21609036 chr3R 21611637 21611670 NOF 6 2624 2.5 3.5 3.0 1.5 2642 chr3R 21609028 intron InR - chr3R 21610349 intron InR - chr3R 21611670 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-646 866 chr3R 21715359 21715390 chr3R 21715475 21715506 9 114 4.0 4.0 4.0 1.8 147 chr3R 21715359 intron CG31176 - chr3R 21715432 intron CG31176 - chr3R 21715506 intron CG31176 - chr3R_9_21715001 chr3R_21715001 RAL-646 867 chr3R 21761132 21761148 chr3R 21768510 21768540 mdg1 4 7383 2.5 5.0 3.8 0.8 7408 chr3R 21761132 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768540 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-646 868 chr3R 21784859 21784887 chr3R 21784957 21784985 7 95 2.5 1.0 1.8 2.5 126 chr3R 21784859 3` UTR,3` UTR CASK -,CRG - chr3R 21784922 3` UTR,3` UTR CASK -,CRG - chr3R 21784985 3` UTR,3` UTR CASK -,CRG - chr3R_7_21780001 chr3R_21780001 RAL-646 869 chr3R 21871274 21871303 chr3R 21871363 21871392 5 89 1.5 0.0 0.8 2.8 118 chr3R 21871274 intron CG31431 + chr3R 21871333 intron CG31431 + chr3R 21871392 intron CG31431 + chr3R_5_21870001 chr3R_21870001 RAL-646 870 chr3R 8339246 8339246 chr3R 21907534 21907534 6 13568288 14.0 13.0 13.5 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-646 871 chr3R 21907534 21907534 chr3R 28831801 28831802 14 6924268 12.0 17.0 14.5 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-646 872 chr3R 8339246 8339247 chr3R 21907535 21907535 9 13568289 13.5 13.5 13.5 0.6 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-646 873 chr3R 9620956 9620957 chr3R 21907535 21907535 4 12286579 10.5 13.5 12.0 0.3 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-646 874 chr3R 17389054 17389054 chr3R 21907535 21907535 4 4518481 4.5 13.5 9.0 0.4 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-646 875 chr3R 21907535 21907535 chr3R 28831801 28831804 32 6924267 12.0 17.0 14.5 2.1 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-646 876 chr3R 21907536 21907536 chr3R 28831801 28831802 28 6924266 12.0 17.0 14.5 1.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-646 877 chr3R 22040372 22040395 chr3R 22040464 22040491 4 90 2.5 4.5 3.5 0.9 119 chr3R 22040372 intergenic not near genes chr3R 22040432 intergenic not near genes chr3R 22040491 intergenic not near genes chr3R_4_22040001 chr3R_22040001 RAL-646 878 chr3R 22234683 22234693 chr3R 22236002 22236012 pogo 4 1319 0.5 0.0 0.2 3.3 1329 chr3R 22234683 intron SKIP + chr3R 22235348 intron SKIP + chr3R 22236012 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-646 879 chr3R 22318972 22318998 chr3R 22319047 22319070 7 74 3.5 0.5 2.0 2.3 98 chr3R 22318972 5` UTR CG34377 - chr3R 22319021 intron CG34377 - chr3R 22319070 intron CG34377 - chr3R_7_22315001 chr3R_22315001 RAL-646 880 chr3R 22450553 22450579 chr3R 22453193 22453218 NOF 9 2639 2.0 6.0 4.0 1.8 2665 chr3R 22450553 intron CG34376 + chr3R 22451886 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-646 881 chr3R 22502270 22502289 chr3R 22502363 22502387 7 98 2.0 2.5 2.2 2.2 117 chr3R 22502270 intron Octbeta1R + chr3R 22502328 intron Octbeta1R + chr3R 22502387 intron Octbeta1R + chr3R_7_22500001 chr3R_22500001 RAL-646 882 chr3R 22648328 22648361 chr3R 22648407 22648414 6 75 1.5 1.0 1.2 2.7 86 chr3R 22648328 intron wake + chr3R 22648371 intron wake + chr3R 22648414 intron wake + chr3R_6_22645001 chr3R_22645001 RAL-646 883 chr3R 22663507 22663534 chr3R 22663584 22663611 6 76 1.5 5.5 3.5 1.3 104 chr3R 22663507 intron wake + chr3R 22663559 intron wake + chr3R 22663611 intron wake + chr3R_6_22660001 chr3R_22660001 RAL-646 884 chr3R 22812199 22812224 chr3R 22812318 22812340 5 115 2.0 2.0 2.0 1.7 141 chr3R 22812199 intergenic not near genes chr3R 22812270 intergenic not near genes chr3R 22812340 intergenic not near genes chr3R_5_22810001 chr3R_22810001 RAL-646 885 chr3R 22871434 22871464 chr3R 22871533 22871562 8 99 1.5 0.5 1.0 4.0 128 chr3R 22871434 intergenic not near genes chr3R 22871498 intergenic not near genes chr3R 22871562 intergenic not near genes chr3R_8_22870001 chr3R_22870001 RAL-646 886 chr3R 23089009 23089029 chr3R 23089086 23089106 5 77 0.0 1.0 0.5 3.3 97 chr3R 23089009 intron CG13830 - chr3R 23089058 intron CG13830 - chr3R 23089106 intron CG13830 - chr3R_5_23085001 chr3R_23085001 RAL-646 887 chr3R 23170502 23170520 chr3R 23170585 23170602 6 83 3.0 3.5 3.2 1.4 100 chr3R 23170502 intron Irk1 + chr3R 23170552 intron Irk1 + chr3R 23170602 intron Irk1 + chr3R_6_23170001 chr3R_23170001 RAL-646 888 chr3R 23242496 23242514 chr3R 23242605 23242616 5 107 3.0 0.5 1.8 1.8 120 chr3R 23242496 intron CG4467 - chr3R 23242556 intron CG4467 - chr3R 23242616 intron CG4467 - chr3R_5_23240001 chr3R_23240001 RAL-646 889 chr3R 23446276 23446310 chr3R 23446354 23446387 17 77 3.0 2.0 2.5 4.9 111 chr3R 23446276 intron CG4374 - chr3R 23446332 intron CG4374 - chr3R 23446387 intron CG4374 - chr3R_17_23445001 chr3R_23445001 RAL-646 890 chr3R 23459202 23459228 chr3R 23459520 23459546 4 318 2.0 1.5 1.8 1.4 344 chr3R 23459202 intron CG4374 - chr3R 23459374 intron CG4374 - chr3R 23459546 intron CG4374 - chr3R_4_23455001 chr3R_23455001 RAL-646 891 chr3R 23684714 23684729 chr3R 23685181 23685190 roo 6 473 2.5 7.0 4.8 1.0 476 chr3R 23684714 intron CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685190 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-646 892 chr3R 23722241 23722255 chr3R 23722328 23722342 4 87 0.5 1.5 1.0 2.0 101 chr3R 23722241 intergenic not near genes chr3R 23722292 intergenic not near genes chr3R 23722342 intergenic not near genes chr3R_4_23720001 chr3R_23720001 RAL-646 893 chr3R 23876902 23876915 chr3R 23876978 23876991 5 76 2.0 3.0 2.5 1.4 89 chr3R 23876902 intron Pli - chr3R 23876946 intron Pli - chr3R 23876991 intron Pli - chr3R_5_23875001 chr3R_23875001 RAL-646 894 chr3R 23916482 23916515 chr3R 23916706 23916729 5 221 0.5 1.5 1.0 2.5 247 chr3R 23916482 intron sba - chr3R 23916606 intron sba - chr3R 23916729 intron sba - chr3R_5_23915001 chr3R_23915001 RAL-646 895 chr3R 23944925 23944934 chr3R 23945010 23945018 4 85 1.0 3.0 2.0 1.3 93 chr3R 23944925 intron CG12268 - chr3R 23944972 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-646 896 chr3R 24072086 24072116 chr3R 24072524 24072554 jockey 12 433 5.5 6.5 6.0 1.7 468 chr3R 24072086 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072554 intron 4EHP - chr3R_12_24070001 chr3R_24070001 RAL-646 897 chr3R 24207212 24207247 chr3R 24212288 24212319 flea 5 5075 2.5 1.0 1.8 1.8 5107 chr3R 24207212 intron twin - chr3R 24209766 intron twin - chr3R 24212319 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-646 898 chr3R 24493286 24493306 chr3R 24493514 24493535 BS 4 229 0.0 3.5 1.8 1.4 249 chr3R 24493286 intergenic not near genes chr3R 24493410 intergenic not near genes chr3R 24493535 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-646 899 chr3R 24517782 24517810 chr3R 24517865 24517885 5 79 3.5 0.5 2.0 1.7 103 chr3R 24517782 exon CG13617 + chr3R 24517834 exon CG13617 + chr3R 24517885 exon CG13617 + chr3R_5_24515001 chr3R_24515001 RAL-646 900 chr3R 24566859 24566879 chr3R 24567194 24567207 4 334 3.0 1.5 2.2 1.2 348 chr3R 24566859 intron CG13624 - chr3R 24567033 intron CG13624 - chr3R 24567207 intron CG13624 - chr3R_4_24565001 chr3R_24565001 RAL-646 901 chr3R 24726946 24726976 chr3R 24727022 24727052 5 76 0.5 1.5 1.0 2.5 106 chr3R 24726946 intron tok + chr3R 24726999 intron tok + chr3R 24727052 intron tok + chr3R_5_24725001 chr3R_24725001 RAL-646 902 chr3R 24730106 24730115 chr3R 24732484 24732491 Doc 4 2378 3.5 0.5 2.0 1.3 2385 chr3R 24730106 intron tok + chr3R 24731298 intron tok + chr3R 24732491 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-646 903 chr3R 24809493 24809505 chr3R 24809574 24809593 5 87 1.5 1.5 1.5 2.0 100 chr3R 24809493 intron CG5807 - chr3R 24809543 intron CG5807 - chr3R 24809593 intron CG5807 - chr3R_5_24805001 chr3R_24805001 RAL-646 904 chr3R 24863271 24863300 chr3R 24864678 24864709 7 1408 20.5 25.0 22.8 0.3 1438 chr3R 24863271 exon CG7016 + chr3R 24863990 exon CG7016 + chr3R 24864709 5` UTR CG13641 - chr3R_7_24860001 chr3R_24860001 RAL-646 905 chr3R 24888211 24888221 chr3R 24888299 24888305 6 87 5.0 4.0 4.5 1.1 94 chr3R 24888211 intron CG31121 - chr3R 24888258 intron CG31121 - chr3R 24888305 intron CG31121 - chr3R_6_24885001 chr3R_24885001 RAL-646 906 chr3R 25300685 25300701 chr3R 25300785 25300817 6 113 0.5 2.5 1.5 2.4 132 chr3R 25300685 intergenic CG13659 + chr3R 25300751 intergenic CG13659 + chr3R 25300817 intergenic CG13659 + chr3R_6_25300001 chr3R_25300001 RAL-646 907 chr3R 25436499 25436519 chr3R 25436587 25436613 6 88 0.5 2.0 1.2 2.7 114 chr3R 25436499 intron Fur1 - chr3R 25436556 intron Fur1 - chr3R 25436613 intron Fur1 - chr3R_6_25435001 chr3R_25435001 RAL-646 908 chr3R 25651031 25651063 chr3R 25651110 25651133 8 78 3.5 1.5 2.5 2.3 102 chr3R 25651031 intergenic mir-92b + chr3R 25651082 intergenic mir-92b + chr3R 25651133 intergenic mir-92b + chr3R_8_25650001 chr3R_25650001 RAL-646 909 chr3R 25709932 25709964 chr3R 25710014 25710046 12 80 2.0 3.5 2.8 3.2 114 chr3R 25709932 intron LpR2 - chr3R 25709989 intron LpR2 - chr3R 25710046 exon LpR2 - chr3R_12_25705001 chr3R_25705001 RAL-646 910 chr3R 25832701 25832721 chr3R 25841875 25841902 roo 7 9180 3.0 2.5 2.8 1.8 9201 chr3R 25832701 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841902 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-646 911 chr3R 25983699 25983719 chr3R 25983797 25983813 4 96 8.0 3.0 5.5 0.6 114 chr3R 25983699 exon Nf1 + chr3R 25983756 intron Nf1 + chr3R 25983813 intron Nf1 + chr3R_4_25980001 chr3R_25980001 RAL-646 912 chr3R 26126474 26126494 chr3R 26126622 26126648 4 152 1.0 1.0 1.0 2.0 174 chr3R 26126474 intron CG31324 + chr3R 26126561 intron CG31324 + chr3R 26126648 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-646 913 chr3R 26210438 26210468 chr3R 26210642 26210671 4 203 0.0 0.5 0.2 3.3 233 chr3R 26210438 intergenic CR44320 + chr3R 26210554 intergenic CR44320 + chr3R 26210671 intergenic CR44320 + chr3R_4_26210001 chr3R_26210001 RAL-646 914 chr3R 26226990 26227021 chr3R 26227097 26227128 13 107 1.0 2.0 1.5 5.2 138 chr3R 26226990 intergenic not near genes chr3R 26227059 intergenic not near genes chr3R 26227128 intergenic not near genes chr3R_13_26225001 chr3R_26225001 RAL-646 915 chr3R 26263713 26263723 chr3R 26264096 26264107 4 383 4.5 0.5 2.5 1.1 394 chr3R 26263713 intron CG6154 + chr3R 26263910 intron CG6154 + chr3R 26264107 intron CG6154 + chr3R_4_26260001 chr3R_26260001 RAL-646 916 chr3R 26339227 26339262 chr3R 26339322 26339357 11 95 2.0 1.5 1.8 3.9 130 chr3R 26339227 intron CG33970 + chr3R 26339292 intron CG33970 + chr3R 26339357 intron CG33970 + chr3R_11_26335001 chr3R_26335001 RAL-646 917 chr3R 26376326 26376358 chr3R 26385486 26385500 roo 5 9151 2.0 0.5 1.2 2.3 9174 chr3R 26376326 intergenic not near genes chr3R 26380913 intergenic not near genes chr3R 26385500 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-646 918 chr3R 26453258 26453270 chr3R 26453327 26453353 4 79 3.0 1.5 2.2 1.2 95 chr3R 26453258 intron CG5447 + chr3R 26453306 intron CG5447 + chr3R 26453353 intron CG5447 + chr3R_4_26450001 chr3R_26450001 RAL-646 919 chr3R 26529345 26529377 chr3R 26529428 26529458 6 78 2.0 1.0 1.5 2.4 113 chr3R 26529345 intron plum - chr3R 26529402 intron plum - chr3R 26529458 intron plum - chr3R_6_26525001 chr3R_26525001 RAL-646 920 chr3R 26558332 26558355 chr3R 26565639 26565666 Stalker4 8 7304 2.5 5.0 3.8 1.7 7334 chr3R 26558332 intron scrib + chr3R 26561999 intron scrib + chr3R 26565666 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-646 921 chr3R 26611347 26611364 chr3R 26611423 26611436 4 75 2.0 0.0 1.0 2.0 89 chr3R 26611347 intergenic not near genes chr3R 26611392 intergenic not near genes chr3R 26611436 intergenic not near genes chr3R_4_26610001 chr3R_26610001 RAL-646 922 chr3R 26642736 26642755 chr3R 26643129 26643148 jockey 5 392 5.0 1.5 3.2 1.2 412 chr3R 26642736 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643148 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-646 923 chr3R 26656636 26656726 chr3R 26656718 26656809 6 97 0.0 0.0 0.0 6.0 173 chr3R 26656636 intron,exon beat-VII -,Tb + chr3R 26656722 intron,exon beat-VII -,Tb + chr3R 26656809 intron,exon beat-VII -,Tb + chr3R_6_26655001 chr3R_26655001 RAL-646 924 chr3R 26704784 26704809 chr3R 26704881 26704904 11 91 0.5 4.0 2.2 3.4 120 chr3R 26704784 intron amon - chr3R 26704844 intron amon - chr3R 26704904 intron amon - chr3R_11_26700001 chr3R_26700001 RAL-646 925 chr3R 27342813 27342825 chr3R 27351394 27351406 Tirant 4 8581 1.5 2.5 2.0 1.3 8593 chr3R 27342813 intron CG42534 + chr3R 27347110 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-646 926 chr3R 27371357 27371386 chr3R 27371437 27371465 12 79 2.0 4.5 3.2 2.9 108 chr3R 27371357 intergenic CG42534 + chr3R 27371411 intergenic CG42534 + chr3R 27371465 intergenic CG42534 + chr3R_12_27370001 chr3R_27370001 RAL-646 927 chr3R 27538466 27538485 chr3R 27538579 27538610 7 122 3.0 4.0 3.5 1.6 144 chr3R 27538466 5` UTR CR44288 + chr3R 27538538 5` UTR CR44288 + chr3R 27538610 5` UTR CR44288 + chr3R_7_27535001 chr3R_27535001 RAL-646 928 chr3R 27705364 27705386 chr3R 27705444 27705450 10 77 4.5 3.5 4.0 2.0 86 chr3R 27705364 exon CG12428 - chr3R 27705407 intron CG12428 - chr3R 27705450 intron CG12428 - chr3R_10_27705001 chr3R_27705001 RAL-646 929 chr3R 28173672 28173684 chr3R 28181101 28181112 mdg1 4 7429 2.5 0.5 1.5 1.6 7440 chr3R 28173672 intron CG34354 + chr3R 28177392 intron CG34354 + chr3R 28181112 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-646 930 chr3R 28253347 28253364 chr3R 28255847 28255872 jockey 4 2507 5.5 1.5 3.5 0.9 2525 chr3R 28253347 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255872 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-646 931 chr3R 28286316 28286351 chr3R 28286404 28286430 7 82 1.5 2.5 2.0 2.3 114 chr3R 28286316 intergenic not near genes chr3R 28286373 intergenic not near genes chr3R 28286430 intergenic not near genes chr3R_7_28285001 chr3R_28285001 RAL-646 932 chr3R 28308073 28308081 chr3R 28308148 28308157 4 76 5.5 5.0 5.2 0.6 84 chr3R 28308073 intergenic not near genes chr3R 28308115 intergenic not near genes chr3R 28308157 intergenic not near genes chr3R_4_28305001 chr3R_28305001 RAL-646 933 chr3R 28368979 28369016 chr3R 28369057 28369099 5 82 0.5 0.0 0.2 4.2 120 chr3R 28368979 intergenic not near genes chr3R 28369039 intergenic not near genes chr3R 28369099 intergenic not near genes chr3R_5_28365001 chr3R_28365001 RAL-646 934 chr3R 28393698 28393731 chr3R 28393797 28393827 4 98 0.5 1.5 1.0 2.0 129 chr3R 28393698 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393827 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-646 935 chr3R 28597490 28597524 chr3R 28597567 28597601 12 76 4.5 1.5 3.0 3.0 111 chr3R 28597490 intergenic not near genes chr3R 28597546 intergenic not near genes chr3R 28597601 intergenic Noa36 - chr3R_12_28595001 chr3R_28595001 RAL-646 936 chr3R 28631836 28631848 chr3R 28631920 28631921 5 82 5.0 4.5 4.8 0.9 85 chr3R 28631836 intron CG10011 - chr3R 28631878 intron CG10011 - chr3R 28631921 intron CG10011 - chr3R_5_28630001 chr3R_28630001 RAL-646 937 chr3R 28742494 28742512 chr3R 28742570 28742588 5 76 0.0 0.0 0.0 5.0 94 chr3R 28742494 intron AstA-R2 - chr3R 28742541 intron AstA-R2 - chr3R 28742588 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-646 938 chr3R 28792886 28792902 chr3R 28797963 28797979 jockey 7 5087 4.0 2.5 3.2 1.7 5093 chr3R 28792886 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797979 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-646 939 chr3R 21907534 21907536 chr3R 28831798 28831801 39 6924266 12.0 16.5 14.2 2.6 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-646 940 chr3R 21907534 21907536 chr3R 28831802 28831802 45 6924267 12.0 17.0 14.5 2.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-646 941 chr3R 28944706 28944716 chr3R 28945307 28945317 5 600 2.0 3.5 2.8 1.3 611 chr3R 28944706 intron CG14521 - chr3R 28945012 intron CG14521 - chr3R 28945317 intron CG14521 - chr3R_5_28945001 chr3R_28945001 RAL-646 942 chr3R 28947970 28947987 chr3R 28948082 28948095 4 111 1.5 0.5 1.0 2.0 125 chr3R 28947970 intron CG14521 - chr3R 28948032 intron CG14521 - chr3R 28948095 intron CG14521 - chr3R_4_28945001 chr3R_28945001 RAL-646 943 chr3R 21907534 21907536 chr3R 29013340 29013340 11 7105805 12.0 9.0 10.5 1.0 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_11_25460001 chr3R_25460001 RAL-646 944 chr3R 29159119 29159154 chr3R 29159204 29159240 4 85 1.0 1.0 1.0 2.0 121 chr3R 29159119 intron CG11897 + chr3R 29159180 intron CG11897 + chr3R 29159240 intron CG11897 + chr3R_4_29155001 chr3R_29155001 RAL-646 945 chr3R 29237272 29237285 chr3R 29239284 29239302 6 2018 7.0 6.0 6.5 0.8 2030 chr3R 29237272 exon CG11951 - chr3R 29238287 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-646 946 chr3R 29406616 29406637 chr3R 29407902 29407922 jockey 4 1285 4.0 2.5 3.2 1.0 1306 chr3R 29406616 intron Ptp99A + chr3R 29407269 intron Ptp99A + chr3R 29407922 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-646 947 chr3R 29406638 29406649 chr3R 29407900 29407935 jockey 6 1280 2.5 2.5 2.5 1.7 1297 chr3R 29406638 intron Ptp99A + chr3R 29407286 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-646 948 chr3R 29430372 29430403 chr3R 29430478 29430509 12 106 4.0 3.5 3.8 2.5 137 chr3R 29430372 intron Ptp99A + chr3R 29430440 intron Ptp99A + chr3R 29430509 intron Ptp99A + chr3R_12_29430001 chr3R_29430001 RAL-646 949 chr3R 29539431 29539460 chr3R 29539507 29539535 6 73 2.0 0.0 1.0 3.0 104 chr3R 29539431 intergenic not near genes chr3R 29539483 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-646 950 chr3R 29576250 29576288 chr3R 29576340 29576363 8 86 0.0 2.5 1.2 3.6 113 chr3R 29576250 intergenic not near genes chr3R 29576306 intergenic not near genes chr3R 29576363 intergenic not near genes chr3R_8_29575001 chr3R_29575001 RAL-646 951 chr3R 29627284 29627314 chr3R 29627696 29627725 7 412 0.5 3.0 1.8 2.5 441 chr3R 29627284 intergenic not near genes chr3R 29627504 intergenic not near genes chr3R 29627725 intergenic not near genes chr3R_7_29625001 chr3R_29625001 RAL-646 952 chr3R 29738263 29738299 chr3R 29739729 29739758 hobo 8 1464 2.0 1.5 1.8 2.9 1495 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739010 intron CG1969 + chr3R 29739758 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-646 953 chr3R 29773881 29773904 chr3R 29773972 29773995 7 90 3.5 1.0 2.2 2.2 114 chr3R 29773881 intron kay + chr3R 29773938 intron kay + chr3R 29773995 intron kay + chr3R_7_29770001 chr3R_29770001 RAL-646 954 chr3R 29882020 29882050 chr3R 29891174 29891207 roo 7 9157 2.0 1.5 1.8 2.5 9187 chr3R 29882020 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-646 955 chr3R 29953445 29953475 chr3R 29953524 29953555 4 73 1.0 2.0 1.5 1.6 110 chr3R 29953445 exon TkR99D - chr3R 29953500 intron TkR99D - chr3R 29953555 intron TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-646 956 chr3R 29957365 29957393 chr3R 29957595 29957637 6 235 0.0 0.0 0.0 6.0 272 chr3R 29957365 intron TkR99D - chr3R 29957501 intron TkR99D - chr3R 29957637 intron TkR99D - chr3R_6_29955001 chr3R_29955001 RAL-646 957 chr3R 30084847 30084879 chr3R 30086314 30086345 hobo 13 1466 1.5 2.0 1.8 4.6 1498 chr3R 30084847 intron sima + chr3R 30085596 intron sima + chr3R 30086345 intron sima + chr3R_13_30085001 chr3R_30085001 RAL-646 958 chr3R 30099066 30099097 chr3R 30099146 30099152 6 75 2.5 1.0 1.8 2.1 86 chr3R 30099066 intron sima + chr3R 30099109 intron sima + chr3R 30099152 intron sima + chr3R_6_30095001 chr3R_30095001 RAL-646 959 chr3R 30175697 30175715 chr3R 30175783 30175786 5 83 1.5 2.0 1.8 1.8 89 chr3R 30175697 intergenic CG1983 - chr3R 30175742 intergenic CG1983 - chr3R 30175786 3` UTR CG1983 - chr3R_5_30175001 chr3R_30175001 RAL-646 960 chr3R 30252267 30252336 chr3R 30252392 30252678 11 137 0.0 4.0 2.0 3.7 411 chr3R 30252267 exon CG9682 + chr3R 30252472 exon CG9682 + chr3R 30252678 exon CG9682 + chr3R_11_30250001 chr3R_30250001 RAL-646 961 chr3R 30317328 30317359 chr3R 30324919 30324945 roo 5 7591 1.0 1.0 1.0 2.5 7617 chr3R 30317328 intron hdc + chr3R 30321136 intron hdc + chr3R 30324945 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-646 962 chr3R 30330510 30330519 chr3R 30330577 30330581 5 68 1.5 0.5 1.0 2.5 71 chr3R 30330510 intron hdc + chr3R 30330546 intron hdc + chr3R 30330581 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-646 963 chr3R 30337840 30337870 chr3R 30337931 30337962 5 91 0.0 1.5 0.8 2.8 122 chr3R 30337840 intron hdc + chr3R 30337901 intron hdc + chr3R 30337962 intron hdc + chr3R_5_30335001 chr3R_30335001 RAL-646 964 chr3R 30396220 30396244 chr3R 30404486 30404510 roo 7 8265 2.5 1.5 2.0 2.3 8290 chr3R 30396220 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-646 965 chr3R 30422941 30422974 chr3R 30423038 30423053 6 95 1.5 1.5 1.5 2.4 112 chr3R 30422941 5` UTR,5` UTR CG2217 -,CG42740 - chr3R 30422997 intergenic CG2217 -,CG42740 -,CG15535 - chr3R 30423053 3` UTR CG15535 - chr3R_6_30420001 chr3R_30420001 RAL-646 966 chr3R 30461493 30461523 chr3R 30461610 30461640 4 117 2.0 1.0 1.5 1.6 147 chr3R 30461493 intron CDase + chr3R 30461566 intron CDase + chr3R 30461640 intron CDase + chr3R_4_30460001 chr3R_30460001 RAL-646 967 chr3R 30480475 30480511 chr3R 30482940 30482979 jockey 6 2467 3.0 5.0 4.0 1.2 2504 chr3R 30480475 intron PH4alphaEFB + chr3R 30481727 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-646 968 chr3R 30560361 30560384 chr3R 30560440 30560460 7 77 2.5 0.5 1.5 2.8 99 chr3R 30560361 intron tmod + chr3R 30560410 intron tmod + chr3R 30560460 intron tmod + chr3R_7_30560001 chr3R_30560001 RAL-646 969 chr3R 30627630 30627638 chr3R 30627685 30627718 5 71 1.0 4.5 2.8 1.3 88 chr3R 30627630 exon CG2267 - chr3R 30627674 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-646 970 chr3R 30679522 30679551 chr3R 30686991 30687013 blood 5 7468 1.5 5.0 3.2 1.2 7491 chr3R 30679522 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687013 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-646 971 chr3R 30690171 30690177 chr3R 30690247 30690261 4 81 5.0 2.5 3.8 0.8 90 chr3R 30690171 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690261 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-646 972 chr3R 30850244 30850268 chr3R 30850332 30850360 5 90 2.5 1.0 1.8 1.8 116 chr3R 30850244 intergenic not near genes chr3R 30850302 intergenic not near genes chr3R 30850360 intergenic not near genes chr3R_5_30850001 chr3R_30850001 RAL-646 973 chr3R 30888925 30888945 chr3R 30893453 30893472 7 4528 20.0 15.5 17.8 0.4 4547 chr3R 30888925 exon Sap-r - chr3R 30891198 intergenic not near genes chr3R 30893472 intergenic not near genes chr3R_7_30890001 chr3R_30890001 RAL-646 974 chr3R 30900534 30900556 chr3R 30900613 30900636 5 79 2.5 1.0 1.8 1.8 102 chr3R 30900534 3` UTR Cyp4c3 + chr3R 30900585 3` UTR Cyp4c3 + chr3R 30900636 3` UTR Cyp4c3 + chr3R_5_30900001 chr3R_30900001 RAL-646 975 chr3R 30921222 30921252 chr3R 30921302 30921332 5 80 1.5 2.0 1.8 1.8 110 chr3R 30921222 intron Ptx1 + chr3R 30921277 intron Ptx1 + chr3R 30921332 intron Ptx1 + chr3R_5_30920001 chr3R_30920001 RAL-646 976 chr3R 30973134 30973164 chr3R 30973294 30973325 5 160 1.0 3.0 2.0 1.7 191 chr3R 30973134 intron 5-HT7 - chr3R 30973230 intron 5-HT7 - chr3R 30973325 intron 5-HT7 - chr3R_5_30970001 chr3R_30970001 RAL-646 977 chr3R 30996639 30996668 chr3R 30996863 30996892 6 223 0.5 2.5 1.5 2.4 253 chr3R 30996639 intron 5-HT7 - chr3R 30996766 intron 5-HT7 - chr3R 30996892 intron 5-HT7 - chr3R_6_30995001 chr3R_30995001 RAL-646 978 chr3R 31001252 31001265 chr3R 31001334 31001337 4 78 3.0 1.5 2.2 1.2 85 chr3R 31001252 intron 5-HT7 - chr3R 31001294 intron 5-HT7 - chr3R 31001337 intron 5-HT7 - chr3R_4_31000001 chr3R_31000001 RAL-646 979 chr3R 31074233 31074261 chr3R 31081831 31081859 springer 7 7597 2.0 3.5 2.8 1.8 7626 chr3R 31074233 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-646 980 chr3R 31136844 31136870 chr3R 31136926 31136954 5 83 4.0 1.0 2.5 1.4 110 chr3R 31136844 intron Gycbeta100B + chr3R 31136899 intron Gycbeta100B + chr3R 31136954 intron Gycbeta100B + chr3R_5_31135001 chr3R_31135001 RAL-646 981 chr3R 31150263 31150288 chr3R 31150343 31150365 4 79 2.5 2.5 2.5 1.1 102 chr3R 31150263 intron Gycbeta100B + chr3R 31150314 intron Gycbeta100B + chr3R 31150365 intron Gycbeta100B + chr3R_4_31150001 chr3R_31150001 RAL-646 982 chr3R 31150289 31150295 chr3R 31150341 31150344 6 59 1.5 2.5 2.0 2.0 55 chr3R 31150289 intron Gycbeta100B + chr3R 31150316 intron Gycbeta100B + chr3R 31150344 intron Gycbeta100B + chr3R_6_31150001 chr3R_31150001 RAL-646 983 chr3R 31172236 31172266 chr3R 31172317 31172347 8 80 0.0 1.5 0.8 4.4 111 chr3R 31172236 intron Gycbeta100B + chr3R 31172292 intron Gycbeta100B + chr3R 31172347 intron Gycbeta100B + chr3R_8_31170001 chr3R_31170001 RAL-646 984 chr3R 31413090 31413117 chr3R 31418290 31418310 copia 15 5198 2.5 3.0 2.8 3.9 5220 chr3R 31413090 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_15_31415001 chr3R_31415001 RAL-646 985 chr3R 31426894 31426914 chr3R 31426986 31427006 6 92 2.0 2.0 2.0 2.0 112 chr3R 31426894 intron Gprk2 + chr3R 31426950 intron Gprk2 + chr3R 31427006 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-646 986 chr3R 31443988 31444004 chr3R 31444122 31444139 4 134 3.5 3.5 3.5 0.9 151 chr3R 31443988 intron Gprk2 + chr3R 31444064 intron Gprk2 + chr3R 31444139 intron Gprk2 + chr3R_4_31440001 chr3R_31440001 RAL-646 987 chr3R 31530817 31530845 chr3R 31531142 31531172 7 319 4.0 4.0 4.0 1.4 355 chr3R 31530817 intergenic not near genes chr3R 31530994 intergenic not near genes chr3R 31531172 intergenic not near genes chr3R_7_31530001 chr3R_31530001 RAL-646 988 chr3R 31691530 31691564 chr3R 31696296 31696315 Doc 7 4761 2.0 2.5 2.2 2.2 4785 chr3R 31691530 intergenic not near genes chr3R 31693922 intergenic not near genes chr3R 31696315 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-646 989 chr3R 31699730 31699752 chr3R 31699799 31699830 4 70 2.0 3.5 2.8 1.1 100 chr3R 31699730 intergenic not near genes chr3R 31699780 intergenic not near genes chr3R 31699830 intergenic not near genes chr3R_4_31695001 chr3R_31695001 RAL-646 990 chr3R 31820317 31820324 chr3R 31820769 31820796 5 463 1.0 5.0 3.0 1.2 479 chr3R 31820317 intron RhoGAP100F + chr3R 31820556 intron RhoGAP100F + chr3R 31820796 intron RhoGAP100F + chr3R_5_31820001 chr3R_31820001 RAL-646 991 chr3R 31911680 31911700 chr3R 31911764 31911772 4 80 1.0 2.0 1.5 1.6 92 chr3R 31911680 intron heph - chr3R 31911726 intron heph - chr3R 31911772 intron heph - chr3R_4_31910001 chr3R_31910001 RAL-646 992 chr3R 31927412 31927422 chr3R 31927522 31927532 6 110 6.5 1.5 4.0 1.2 120 chr3R 31927412 intron heph - chr3R 31927472 intron heph - chr3R 31927532 intron heph - chr3R_6_31925001 chr3R_31925001 RAL-646 993 chr3R 31948471 31948494 chr3R 31948555 31948578 5 84 0.0 2.5 1.2 2.3 107 chr3R 31948471 intron heph - chr3R 31948524 intron heph - chr3R 31948578 intron heph - chr3R_5_31945001 chr3R_31945001 RAL-646 994 chr3R 31953089 31953114 chr3R 31953176 31953202 8 86 2.5 3.5 3.0 2.0 113 chr3R 31953089 intron heph - chr3R 31953146 intron heph - chr3R 31953202 intron heph - chr3R_8_31950001 chr3R_31950001 RAL-646 995 chr3R 31997995 31998024 chr3R 32005464 32005492 blood 6 7466 1.0 1.5 1.2 2.7 7497 chr3R 31997995 intron heph - chr3R 32001744 intron heph - chr3R 32005492 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-646 996 chr4 671604 671635 chr4 680187 680218 Tirant 7 8582 1.0 2.5 1.8 2.5 8614 chr4 671604 intron CG11360 + chr4 675911 intron CG11360 + chr4 680218 intron CG11360 + chr4_7_675001 chr4_675001 RAL-646 997 chrX 551422 551453 chrX 558983 559015 412 6 7557 4.0 2.0 3.0 1.5 7593 chrX 551422 intron Appl + chrX 555218 intron Appl + chrX 559015 intron Appl + chrX_6_555001 chrX_555001 RAL-646 998 chrX 667649 667678 chrX 667733 667762 7 83 0.0 1.0 0.5 4.7 113 chrX 667649 intergenic not near genes chrX 667706 intergenic not near genes chrX 667762 intergenic not near genes chrX_7_665001 chrX_665001 RAL-646 999 chrX 670270 670294 chrX 670346 670362 7 75 0.0 0.5 0.2 5.8 92 chrX 670270 intergenic not near genes chrX 670316 intergenic not near genes chrX 670362 intergenic not near genes chrX_7_670001 chrX_670001 RAL-646 1000 chrX 680837 680867 chrX 680920 680950 12 81 3.0 2.0 2.5 3.4 113 chrX 680837 intergenic not near genes chrX 680894 intergenic not near genes chrX 680950 intergenic not near genes chrX_12_680001 chrX_680001 RAL-646 1001 chrX 692445 692475 chrX 693351 693381 7 906 8.5 12.5 10.5 0.6 936 chrX 692445 intron sdk + chrX 692913 intron sdk + chrX 693381 intron sdk + chrX_7_690001 chrX_690001 RAL-646 1002 chrX 713573 713574 chrX 713684 713685 4 114 0.5 1.0 0.8 2.2 112 chrX 713573 intron sdk + chrX 713629 intron sdk + chrX 713685 intron sdk + chrX_4_710001 chrX_710001 RAL-646 1003 chrX 757216 757244 chrX 757468 757482 9 250 1.0 2.0 1.5 3.6 266 chrX 757216 intron CG5254 + chrX 757349 intron CG5254 + chrX 757482 intron CG5254 + chrX_9_755001 chrX_755001 RAL-646 1004 chrX 778126 778158 chrX 778215 778248 11 87 2.5 0.0 1.2 5.0 122 chrX 778126 intron fz3 + chrX 778187 intron fz3 + chrX 778248 intron fz3 + chrX_11_775001 chrX_775001 RAL-646 1005 chrX 806784 806816 chrX 806880 806909 8 95 1.0 3.0 2.0 2.7 125 chrX 806784 intron Sec22 + chrX 806846 intron Sec22 + chrX 806909 intron Sec22 + chrX_8_805001 chrX_805001 RAL-646 1006 chrX 827600 827618 chrX 835392 835392 roo 5 7787 3.0 0.0 1.5 2.0 7792 chrX 827600 intron CG43867 - chrX 831496 intron CG43867 - chrX 835392 intron CG43867 - chrX_5_830001 chrX_830001 RAL-646 1007 chrX 906705 906733 chrX 908494 908522 S-element 8 1787 2.0 2.5 2.2 2.5 1817 chrX 906705 intron CG43867 - chrX 907614 intron CG43867 - chrX 908522 intron CG43867 - chrX_8_905001 chrX_905001 RAL-646 1008 chrX 911209 911236 chrX 911441 911471 5 235 1.0 4.0 2.5 1.4 262 chrX 911209 intron CG43867 - chrX 911340 intron CG43867 - chrX 911471 intron CG43867 - chrX_5_910001 chrX_910001 RAL-646 1009 chrX 977374 977406 chrX 977474 977502 8 98 0.5 2.5 1.5 3.2 128 chrX 977374 intergenic not near genes chrX 977438 intergenic not near genes chrX 977502 intergenic not near genes chrX_8_975001 chrX_975001 RAL-646 1010 chrX 1127284 1127306 chrX 1127591 1127594 6 300 0.5 3.0 1.8 2.1 310 chrX 1127284 intron CG3655 - chrX 1127439 intron CG3655 - chrX 1127594 intron CG3655 - chrX_6_1125001 chrX_1125001 RAL-646 1011 chrX 1153199 1153215 chrX 1153277 1153297 4 81 0.5 3.0 1.8 1.4 98 chrX 1153199 intergenic not near genes chrX 1153248 intergenic not near genes chrX 1153297 intergenic not near genes chrX_4_1150001 chrX_1150001 RAL-646 1012 chrX 1163313 1163329 chrX 1163391 1163407 6 78 2.5 2.0 2.2 1.9 94 chrX 1163313 intergenic CG34320 - chrX 1163360 intergenic CG34320 - chrX 1163407 intergenic CG34320 - chrX_6_1160001 chrX_1160001 RAL-646 1013 chrX 1185558 1185590 chrX 1185637 1185667 5 79 2.5 0.0 1.2 2.3 109 chrX 1185558 intron CG14626 + chrX 1185612 intron CG14626 + chrX 1185667 intron CG14626 + chrX_5_1185001 chrX_1185001 RAL-646 1014 chrX 1428595 1428622 chrX 1428679 1428708 7 85 1.0 2.5 1.8 2.5 113 chrX 1428595 intron futsch + chrX 1428652 intron futsch + chrX 1428708 intron futsch + chrX_7_1425001 chrX_1425001 RAL-646 1015 chrX 1573237 1573246 chrX 1573331 1573339 5 93 5.5 2.0 3.8 1.0 102 chrX 1573237 intron Mur2B - chrX 1573288 intron Mur2B - chrX 1573339 intron Mur2B - chrX_5_1570001 chrX_1570001 RAL-646 1016 chrX 1627975 1628000 chrX 1635443 1635468 gtwin 5 7464 5.0 6.0 5.5 0.8 7493 chrX 1627975 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635468 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-646 1017 chrX 2069370 2069404 chrX 2069469 2069504 5 100 0.5 0.5 0.5 3.3 134 chrX 2069370 intron,exon CG4199 -,CG4194 + chrX 2069437 intron,3` UTR CG4199 -,CG4194 + chrX 2069504 intron,3` UTR CG4199 -,CG4194 + chrX_5_2065001 chrX_2065001 RAL-646 1018 chrX 2098610 2098640 chrX 2098687 2098702 6 66 1.5 4.5 3.0 1.5 92 chrX 2098610 intron csw + chrX 2098656 intron csw + chrX 2098702 intron csw + chrX_6_2095001 chrX_2095001 RAL-646 1019 chrX 2397923 2397928 chrX 2398017 2398022 6 93 4.0 3.0 3.5 1.3 99 chrX 2397923 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398022 intergenic not near genes chrX_6_2395001 chrX_2395001 RAL-646 1020 chrX 2399836 2399870 chrX 2408189 2408204 roo 5 8348 1.0 1.0 1.0 2.5 8368 chrX 2399836 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408204 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-646 1021 chrX 2515155 2515177 chrX 2515258 2515271 5 102 0.5 3.0 1.8 1.8 116 chrX 2515155 intron trol - chrX 2515213 intron trol - chrX 2515271 intron trol - chrX_5_2515001 chrX_2515001 RAL-646 1022 chrX 2578816 2578845 chrX 2578920 2578949 7 102 1.5 1.0 1.2 3.2 133 chrX 2578816 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578949 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-646 1023 chrX 2888111 2888147 chrX 2888189 2888225 8 75 3.5 3.5 3.5 1.8 114 chrX 2888111 intron kirre + chrX 2888168 intron kirre + chrX 2888225 intron kirre + chrX_8_2885001 chrX_2885001 RAL-646 1024 chrX 2918802 2918808 chrX 2918885 2918892 4 83 2.0 2.0 2.0 1.3 90 chrX 2918802 intron kirre + chrX 2918847 intron kirre + chrX 2918892 intron kirre + chrX_4_2915001 chrX_2915001 RAL-646 1025 chrX 3481745 3481773 chrX 3481814 3481848 7 74 0.5 1.0 0.8 3.9 103 chrX 3481745 intron,intron CR44999 +,CG10804 - chrX 3481796 intron,intron CR44999 +,CG10804 - chrX 3481848 intron,intron CR44999 +,CG10804 - chrX_7_3480001 chrX_3480001 RAL-646 1026 chrX 3493098 3493110 chrX 3502257 3502269 roo 4 9159 3.0 1.5 2.2 1.2 9171 chrX 3493098 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502269 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-646 1027 chrX 3597550 3597576 chrX 3619718 3619744 roo 6 22168 4.0 0.5 2.2 1.9 22194 chrX 3597550 intron AstA-R1 + chrX 3608647 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-646 1028 chrX 3630555 3630574 chrX 3630620 3630650 5 64 0.0 0.5 0.2 4.2 95 chrX 3630555 intron AstA-R1 + chrX 3630602 intron AstA-R1 + chrX 3630650 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-646 1029 chrX 3866110 3866135 chrX 3866187 3866213 5 77 1.5 3.0 2.2 1.6 103 chrX 3866110 intron yin - chrX 3866162 intron yin - chrX 3866213 intron yin - chrX_5_3865001 chrX_3865001 RAL-646 1030 chrX 3986863 3986895 chrX 3994496 3994528 412 6 7633 2.0 1.0 1.5 2.4 7665 chrX 3986863 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994528 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-646 1031 chrX 4029645 4029673 chrX 4029824 4029852 5 179 1.5 3.0 2.2 1.6 207 chrX 4029645 intergenic not near genes chrX 4029748 intergenic not near genes chrX 4029852 intergenic not near genes chrX_5_4025001 chrX_4025001 RAL-646 1032 chrX 4157898 4157913 chrX 4164950 4164966 297 7 7053 2.0 0.5 1.2 3.2 7068 chrX 4157898 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164966 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-646 1033 chrX 4276475 4276510 chrX 4276554 4276573 6 73 1.5 2.5 2.0 2.0 98 chrX 4276475 intergenic CG15577 - chrX 4276524 3` UTR CG15577 - chrX 4276573 3` UTR CG15577 - chrX_6_4275001 chrX_4275001 RAL-646 1034 chrX 4515843 4515848 chrX 4515921 4515925 4 78 1.0 0.5 0.8 2.2 82 chrX 4515843 intron CR32773 - chrX 4515884 intron CR32773 - chrX 4515925 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-646 1035 chrX 4619630 4619649 chrX 4619809 4619828 4 179 0.5 2.0 1.2 1.8 198 chrX 4619630 intron peb + chrX 4619729 intron peb + chrX 4619828 intron peb + chrX_4_4615001 chrX_4615001 RAL-646 1036 chrX 4763247 4763285 chrX 4763735 4763773 Stalker4 8 487 1.0 0.0 0.5 5.3 526 chrX 4763247 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763773 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-646 1037 chrX 4792385 4792408 chrX 4792818 4792841 jockey 5 432 0.0 3.0 1.5 2.0 456 chrX 4792385 intergenic not near genes chrX 4792613 intergenic not near genes chrX 4792841 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-646 1038 chrX 5096281 5096304 chrX 5103846 5103868 springer 6 7564 3.5 2.0 2.8 1.6 7587 chrX 5096281 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-646 1039 chrX 5369945 5369978 chrX 5370025 5370052 8 75 1.5 1.0 1.2 3.6 107 chrX 5369945 intron SK + chrX 5369998 intron SK + chrX 5370052 intron SK + chrX_8_5370001 chrX_5370001 RAL-646 1040 chrX 5524850 5524868 chrX 5528713 5528730 412 4 3862 2.5 0.5 1.5 1.6 3880 chrX 5524850 intergenic snoRNA:Psi28S-3342 - chrX 5526790 intergenic not near genes chrX 5528730 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-646 1041 chrX 5883814 5883841 chrX 5884052 5884079 pogo 4 240 0.0 0.5 0.2 3.3 265 chrX 5883814 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884079 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-646 1042 chrX 6118699 6118732 chrX 6118781 6118814 6 82 1.0 1.5 1.2 2.7 115 chrX 6118699 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-646 1043 chrX 6183488 6183511 chrX 6183771 6183786 4 281 3.0 2.0 2.5 1.1 298 chrX 6183488 intron Ca-alpha1T - chrX 6183637 intron Ca-alpha1T - chrX 6183786 intron Ca-alpha1T - chrX_4_6180001 chrX_6180001 RAL-646 1044 chrX 6335226 6335243 chrX 6337733 6337753 Tirant 4 2509 0.0 3.5 1.8 1.4 2527 chrX 6335226 intergenic not near genes chrX 6336490 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-646 1045 chrX 6392869 6392899 chrX 6397633 6397663 Doc 9 4763 1.0 2.0 1.5 3.6 4794 chrX 6392869 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397663 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-646 1046 chrX 6562825 6562851 chrX 6571299 6571304 Tirant 7 8473 1.5 2.0 1.8 2.5 8479 chrX 6562825 intron CG34417 + chrX 6567064 intron CG34417 + chrX 6571304 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-646 1047 chrX 6901379 6901387 chrX 6901455 6901458 4 74 0.5 3.0 1.8 1.4 79 chrX 6901379 intergenic not near genes chrX 6901418 intergenic not near genes chrX 6901458 intergenic not near genes chrX_4_6900001 chrX_6900001 RAL-646 1048 chrX 7023609 7023632 chrX 7030999 7031016 Tabor 7 7383 2.5 2.0 2.2 2.2 7407 chrX 7023609 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031016 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-646 1049 chrX 7176909 7176930 chrX 7176986 7176991 4 74 2.0 3.0 2.5 1.1 82 chrX 7176909 intron,intron CG9650 +,CR44357 - chrX 7176950 intron,intron CG9650 +,CR44357 - chrX 7176991 intron,intron CG9650 +,CR44357 - chrX_4_7175001 chrX_7175001 RAL-646 1050 chrX 7475049 7475081 chrX 7475142 7475172 5 92 0.5 1.0 0.8 2.8 123 chrX 7475049 intergenic not near genes chrX 7475110 intergenic not near genes chrX 7475172 intergenic not near genes chrX_5_7475001 chrX_7475001 RAL-646 1051 chrX 7702907 7702932 chrX 7703344 7703369 jockey 4 438 1.5 2.5 2.0 1.3 462 chrX 7702907 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-646 1052 chrX 8031435 8031458 chrX 8035744 8035767 Juan 5 4309 1.5 0.5 1.0 2.5 4332 chrX 8031435 intergenic not near genes chrX 8033601 intergenic not near genes chrX 8035767 3` UTR CG2233 - chrX_5_8030001 chrX_8030001 RAL-646 1053 chrX 8364848 8364871 chrX 8365244 8365267 BS 5 394 0.5 0.0 0.2 4.2 419 chrX 8364848 intron nAChRalpha3 - chrX 8365058 intron nAChRalpha3 - chrX 8365267 intron nAChRalpha3 - chrX_5_8365001 chrX_8365001 RAL-646 1054 chrX 8543594 8543618 chrX 8543667 8543697 6 76 1.5 0.5 1.0 3.0 103 chrX 8543594 intron Nrg + chrX 8543646 intron Nrg + chrX 8543697 intron Nrg + chrX_6_8540001 chrX_8540001 RAL-646 1055 chrX 8658343 8658370 chrX 8658503 8658509 7 152 0.5 1.0 0.8 3.9 166 chrX 8658343 intergenic not near genes chrX 8658426 intergenic not near genes chrX 8658509 intergenic not near genes chrX_7_8655001 chrX_8655001 RAL-646 1056 chrX 8772239 8772250 chrX 8772328 8772339 5 89 3.0 1.0 2.0 1.7 100 chrX 8772239 intron Lim1 - chrX 8772289 intron Lim1 - chrX 8772339 intron Lim1 - chrX_5_8770001 chrX_8770001 RAL-646 1057 chrX 8922333 8922361 chrX 8922767 8922795 jockey 10 434 1.0 2.0 1.5 4.0 462 chrX 8922333 intron rdgA + chrX 8922564 intron rdgA + chrX 8922795 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-646 1058 chrX 9062728 9062754 chrX 9062806 9062832 4 78 2.5 0.5 1.5 1.6 104 chrX 9062728 intron CG15365 - chrX 9062780 intron CG15365 - chrX 9062832 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-646 1059 chrX 9337940 9337971 chrX 9338032 9338063 6 91 2.5 2.5 2.5 1.7 123 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338063 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-646 1060 chrX 9473849 9473883 chrX 9474084 9474117 10 228 2.0 3.0 2.5 2.9 268 chrX 9473849 intron mgl - chrX 9473983 intron mgl - chrX 9474117 intron mgl - chrX_10_9470001 chrX_9470001 RAL-646 1061 chrX 9508136 9508145 chrX 9509654 9509663 jockey 4 1518 0.0 2.0 1.0 2.0 1527 chrX 9508136 intron CG32700 - chrX 9508900 intron CG32700 - chrX 9509663 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-646 1062 chrX 9575802 9575823 chrX 9576114 9576147 mdg3 6 319 2.5 3.0 2.8 1.6 345 chrX 9575802 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-646 1063 chrX 9599177 9599202 chrX 9599254 9599279 7 76 1.5 3.5 2.5 2.0 102 chrX 9599177 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599279 intergenic not near genes chrX_7_9595001 chrX_9595001 RAL-646 1064 chrX 9702553 9702582 chrX 9702636 9702665 5 82 1.5 1.0 1.2 2.3 112 chrX 9702553 intergenic not near genes chrX 9702609 intergenic not near genes chrX 9702665 intergenic not near genes chrX_5_9700001 chrX_9700001 RAL-646 1065 chrX 10343473 10343499 chrX 10343665 10343691 5 192 3.5 0.0 1.8 1.8 218 chrX 10343473 intron CG43740 + chrX 10343582 intron CG43740 + chrX 10343691 intron CG43740 + chrX_5_10340001 chrX_10340001 RAL-646 1066 chrX 10719125 10719145 chrX 10719209 10719229 5 81 0.0 0.5 0.2 4.2 104 chrX 10719125 intron CG32676 - chrX 10719177 intron CG32676 - chrX 10719229 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-646 1067 chrX 11194453 11194461 chrX 11201865 11201880 gypsy5 5 7417 5.0 4.0 4.5 0.9 7427 chrX 11194453 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201880 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-646 1068 chrX 11254171 11254201 chrX 11254282 11254311 6 109 2.0 3.0 2.5 1.7 140 chrX 11254171 intron CG44422 - chrX 11254241 intron CG44422 - chrX 11254311 intron CG44422 - chrX_6_11250001 chrX_11250001 RAL-646 1069 chrX 11258191 11258220 chrX 11258273 11258298 4 81 1.5 2.5 2.0 1.3 107 chrX 11258191 intron CG44422 - chrX 11258244 intron CG44422 - chrX 11258298 intron CG44422 - chrX_4_11255001 chrX_11255001 RAL-646 1070 chrX 11558300 11558557 chrX 11558380 11558631 8 84 1.0 2.0 1.5 3.2 331 chrX 11558300 intron CG1572 - chrX 11558466 intron CG1572 - chrX 11558631 5` UTR CG1572 - chrX_8_11555001 chrX_11555001 RAL-646 1071 chrX 11719869 11719896 chrX 11719949 11719953 4 74 0.5 0.5 0.5 2.7 84 chrX 11719869 3` UTR prtp + chrX 11719911 intergenic prtp +,Tango10 + chrX 11719953 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-646 1072 chrX 11936576 11936583 chrX 11936675 11936682 4 98 0.0 5.0 2.5 1.1 106 chrX 11936576 intron cac - chrX 11936629 intron cac - chrX 11936682 intron cac - chrX_4_11935001 chrX_11935001 RAL-646 1073 chrX 12043844 12043865 chrX 12043926 12043936 6 84 0.5 1.0 0.8 3.3 92 chrX 12043844 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043890 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043936 5` UTR,5` UTR CR43960 +,Ten-a + chrX_6_12040001 chrX_12040001 RAL-646 1074 chrX 12176520 12176546 chrX 12176946 12176947 5 422 2.5 1.0 1.8 1.8 427 chrX 12176520 intron,3` UTR Ten-a +,CG1924 - chrX 12176734 intron,3` UTR Ten-a +,CG1924 - chrX 12176947 intron,exon Ten-a +,CG1924 - chrX_5_12175001 chrX_12175001 RAL-646 1075 chrX 12752283 12752310 chrX 12752370 12752396 4 87 0.0 2.5 1.2 1.8 113 chrX 12752283 5` UTR CR44619 + chrX 12752340 5` UTR CR44619 + chrX 12752396 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 RAL-646 1076 chrX 12804515 12804541 chrX 12804591 12804619 4 78 0.5 0.5 0.5 2.7 104 chrX 12804515 intron Pde9 - chrX 12804567 intron Pde9 - chrX 12804619 intron Pde9 - chrX_4_12800001 chrX_12800001 RAL-646 1077 chrX 13061356 13061374 chrX 13061466 13061484 6 110 2.5 2.0 2.2 1.9 128 chrX 13061356 intron rad + chrX 13061420 intron rad + chrX 13061484 intron rad + chrX_6_13060001 chrX_13060001 RAL-646 1078 chrX 13172351 13172376 chrX 13172427 13172452 6 76 1.0 1.0 1.0 3.0 101 chrX 13172351 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172452 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-646 1079 chrX 13374837 13374860 chrX 13374917 13374939 5 77 0.5 0.5 0.5 3.3 102 chrX 13374837 intron CG1640 + chrX 13374888 intron CG1640 + chrX 13374939 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-646 1080 chrX 13416682 13416714 chrX 13416774 13416793 8 86 4.5 2.0 3.2 1.9 111 chrX 13416682 exon Set2 + chrX 13416738 exon Set2 + chrX 13416793 exon Set2 + chrX_8_13415001 chrX_13415001 RAL-646 1081 chrX 13442143 13442163 chrX 13442234 13442254 4 91 0.5 2.5 1.5 1.6 111 chrX 13442143 intergenic not near genes chrX 13442198 intergenic not near genes chrX 13442254 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-646 1082 chrX 13577756 13577778 chrX 13577991 13578014 4 236 1.5 2.0 1.8 1.4 258 chrX 13577756 intron Tango13 + chrX 13577885 intron Tango13 + chrX 13578014 intron Tango13 + chrX_4_13575001 chrX_13575001 RAL-646 1083 chrX 14105021 14105049 chrX 14114172 14114200 roo 9 9148 4.0 3.5 3.8 1.9 9179 chrX 14105021 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114200 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-646 1084 chrX 14340281 14340305 chrX 14340382 14340404 5 100 1.0 1.5 1.2 2.3 123 chrX 14340281 intron dpr8 + chrX 14340342 intron dpr8 + chrX 14340404 intron dpr8 + chrX_5_14340001 chrX_14340001 RAL-646 1085 chrX 14560268 14560291 chrX 14560352 14560373 6 83 3.5 1.0 2.2 1.9 105 chrX 14560268 intergenic not near genes chrX 14560320 intergenic not near genes chrX 14560373 intergenic not near genes chrX_6_14560001 chrX_14560001 RAL-646 1086 chrX 14589687 14589706 chrX 14589921 14589947 pogo 5 240 1.0 0.5 0.8 2.8 260 chrX 14589687 intron CG9413 - chrX 14589817 intron CG9413 - chrX 14589947 intron CG9413 - chrX_5_14585001 chrX_14585001 RAL-646 1087 chrX 14636465 14636483 chrX 14641905 14641924 I-element 4 5441 1.5 1.5 1.5 1.6 5459 chrX 14636465 intron NetA - chrX 14639194 intron NetA - chrX 14641924 intron NetA - chrX_4_14635001 chrX_14635001 RAL-646 1088 chrX 14636487 14636491 chrX 14641899 14641921 I-element 4 5430 1.5 0.5 1.0 2.0 5434 chrX 14636487 intron NetA - chrX 14639204 intron NetA - chrX 14641921 intron NetA - chrX_4_14635001 chrX_14635001 RAL-646 1089 chrX 14778030 14778057 chrX 14782827 14782854 Doc 4 4797 0.5 0.0 0.2 3.3 4824 chrX 14778030 intergenic CG5347 + chrX 14780442 intergenic not near genes chrX 14782854 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-646 1090 chrX 14806760 14806785 chrX 14806845 14806873 5 87 0.0 0.0 0.0 5.0 113 chrX 14806760 intron rut - chrX 14806816 intron rut - chrX 14806873 intron rut - chrX_5_14805001 chrX_14805001 RAL-646 1091 chrX 15413048 15413083 chrX 15417350 15417382 Juan 7 4297 3.0 1.5 2.2 2.2 4334 chrX 15413048 intron Cngl - chrX 15415215 intron Cngl - chrX 15417382 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-646 1092 chrX 15421925 15421950 chrX 15423436 15423461 pogo 4 1509 2.0 0.5 1.2 1.8 1536 chrX 15421925 intron Cngl - chrX 15422693 intron Cngl - chrX 15423461 intron Cngl - chrX_4_15420001 chrX_15420001 RAL-646 1093 chrX 15435687 15435700 chrX 15436120 15436133 rover 4 433 0.0 3.0 1.5 1.6 446 chrX 15435687 intron Cngl - chrX 15435910 intron Cngl - chrX 15436133 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-646 1094 chrX 15492505 15492533 chrX 15492596 15492624 8 91 1.5 2.0 1.8 2.9 119 chrX 15492505 intron Gmap + chrX 15492564 intron Gmap + chrX 15492624 intron Gmap + chrX_8_15490001 chrX_15490001 RAL-646 1095 chrX 15678035 15678068 chrX 15678112 15678139 9 74 1.5 1.0 1.2 4.1 104 chrX 15678035 intergenic CG12708 + chrX 15678087 intergenic CG12708 + chrX 15678139 intergenic CG12708 + chrX_9_15675001 chrX_15675001 RAL-646 1096 chrX 16492666 16492671 chrX 16498243 16498248 mdg3 4 5577 2.5 3.0 2.8 1.1 5582 chrX 16492666 intron para - chrX 16495457 intron para - chrX 16498248 intron para - chrX_4_16495001 chrX_16495001 RAL-646 1097 chrX 17011706 17011998 chrX 17011853 17012055 10 96 1.5 2.0 1.8 3.6 349 chrX 17011706 intron CG45002 - chrX 17011880 intron CG45002 - chrX 17012055 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-646 1098 chrX 17122638 17122668 chrX 17122729 17122759 6 87 1.5 1.0 1.2 2.7 121 chrX 17122638 intron CG5004 + chrX 17122698 intron CG5004 + chrX 17122759 intron CG5004 + chrX_6_17120001 chrX_17120001 RAL-646 1099 chrX 17680893 17680920 chrX 17680968 17680972 5 70 1.0 2.0 1.5 2.0 79 chrX 17680893 intron chas - chrX 17680932 intron chas - chrX 17680972 intron chas - chrX_5_17680001 chrX_17680001 RAL-646 1100 chrX 17792951 17792978 chrX 17796249 17796274 flea 4 3296 1.5 1.0 1.2 1.8 3323 chrX 17792951 intron OdsH + chrX 17794612 intron OdsH + chrX 17796274 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-646 1101 chrX 18122822 18122842 chrX 18122895 18122918 4 73 2.0 1.0 1.5 1.6 96 chrX 18122822 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122918 5` UTR CR45606 + chrX_4_18120001 chrX_18120001 RAL-646 1102 chrX 18344698 18344722 chrX 18344788 18344805 7 88 2.0 4.0 3.0 1.8 107 chrX 18344698 intron CG6123 - chrX 18344752 intron CG6123 - chrX 18344805 intron CG6123 - chrX_7_18340001 chrX_18340001 RAL-646 1103 chrX 18427381 18427407 chrX 18427792 18427818 8 411 2.0 0.5 1.2 3.6 437 chrX 18427381 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427818 intergenic not near genes chrX_8_18425001 chrX_18425001 RAL-646 1104 chrX 18719999 18720008 chrX 18720084 18720086 4 87 2.5 0.5 1.5 1.6 87 chrX 18719999 intron CCKLR-17D1 - chrX 18720042 intron CCKLR-17D1 - chrX 18720086 intron CCKLR-17D1 - chrX_4_18720001 chrX_18720001 RAL-646 1105 chrX 18896908 18896934 chrX 18896985 18897011 6 76 5.0 4.0 4.5 1.1 103 chrX 18896908 intergenic CG7349 + chrX 18896960 intergenic CG7349 + chrX 18897011 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-646 1106 chrX 19076378 19076408 chrX 19076526 19076558 5 143 2.0 3.5 2.8 1.3 180 chrX 19076378 intergenic not near genes chrX 19076468 intergenic not near genes chrX 19076558 intergenic not near genes chrX_5_19075001 chrX_19075001 RAL-646 1107 chrX 19136556 19136585 chrX 19143476 19143504 412 6 6919 1.0 7.0 4.0 1.2 6948 chrX 19136556 intergenic not near genes chrX 19140030 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_6_19140001 chrX_19140001 RAL-646 1108 chrX 19380173 19380181 chrX 19380413 19380422 pogo 4 240 1.5 0.5 1.0 2.0 249 chrX 19380173 intron kek5 + chrX 19380298 intron kek5 + chrX 19380422 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-646 1109 chrX 19472131 19472156 chrX 19472690 19472715 jockey 6 563 2.0 3.5 2.8 1.6 584 chrX 19472131 intergenic kek5 + chrX 19472423 intergenic not near genes chrX 19472715 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-646 1110 chrX 19500560 19500749 chrX 19500637 19500810 10 81 0.5 1.0 0.8 5.6 250 chrX 19500560 intron,intron CG14200 +,Pfrx + chrX 19500685 intron,intron CG14200 +,Pfrx + chrX 19500810 intron,intron CG14200 +,Pfrx + chrX_10_19500001 chrX_19500001 RAL-646 1111 chrX 19576570 19576591 chrX 19576648 19576669 7 76 0.5 2.5 1.5 2.8 99 chrX 19576570 intron Tao - chrX 19576620 intron Tao - chrX 19576669 intron Tao - chrX_7_19575001 chrX_19575001 RAL-646 1112 chrX 19593946 19593972 chrX 19594031 19594057 9 84 0.5 2.5 1.5 3.6 111 chrX 19593946 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594057 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-646 1113 chrX 19710071 19710098 chrX 19711857 19711867 S-element 6 1781 3.0 2.5 2.8 1.6 1796 chrX 19710071 intron meso18E - chrX 19710969 intron meso18E - chrX 19711867 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-646 1114 chrX 19822833 19822864 chrX 19822995 19823014 9 162 4.0 1.0 2.5 2.6 181 chrX 19822833 intergenic not near genes chrX 19822924 intergenic skpE - chrX 19823014 intergenic skpE - chrX_9_19820001 chrX_19820001 RAL-646 1115 chrX 19897393 19897416 chrX 19897463 19897488 5 71 1.0 0.5 0.8 2.8 95 chrX 19897393 intron Hers + chrX 19897440 intron Hers + chrX 19897488 intron Hers + chrX_5_19895001 chrX_19895001 RAL-646 1116 chrX 20150384 20150394 chrX 20150473 20150483 5 88 0.5 3.0 1.8 1.8 99 chrX 20150384 intron CG9572 + chrX 20150434 intron CG9572 + chrX 20150483 intron CG9572 + chrX_5_20150001 chrX_20150001 RAL-646 1117 chrX 20377326 20377349 chrX 20378792 20378816 hobo 6 1467 4.5 4.0 4.2 1.2 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-646 1118 chrX 20504129 20504154 chrX 20505650 20505675 transib2 6 1520 2.0 2.0 2.0 2.0 1546 chrX 20504129 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505675 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-646 1119 chrX 20641184 20641212 chrX 20641295 20641323 4 109 2.5 2.0 2.2 1.2 139 chrX 20641184 intergenic not near genes chrX 20641254 intergenic not near genes chrX 20641323 intergenic not near genes chrX_4_20640001 chrX_20640001 RAL-646 1120 chrX 20670933 20670960 chrX 20671031 20671056 5 98 1.0 1.0 1.0 2.5 123 chrX 20670933 3` UTR hydra - chrX 20670994 3` UTR hydra - chrX 20671056 3` UTR hydra - chrX_5_20670001 chrX_20670001 RAL-646 1121 chrX 20710419 20710430 chrX 20710496 20710507 5 76 0.5 0.5 0.5 3.3 88 chrX 20710419 intergenic not near genes chrX 20710463 intergenic not near genes chrX 20710507 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-646 1122 chrX 20860256 20860271 chrX 20860355 20860370 9 99 2.0 1.5 1.8 3.2 114 chrX 20860256 intron shakB - chrX 20860313 intron shakB - chrX 20860370 intron shakB - chrX_9_20860001 chrX_20860001 RAL-646 1123 chrX 20874826 20874832 chrX 20874913 20874913 4 85 1.5 3.0 2.2 1.2 87 chrX 20874826 intron shakB - chrX 20874870 intron shakB - chrX 20874913 intron shakB - chrX_4_20870001 chrX_20870001 RAL-646 1124 chrX 20940727 20940752 chrX 20942195 20942206 hobo 5 1464 1.5 2.5 2.0 1.7 1479 chrX 20940727 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942206 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-646 1125 chrX 20971787 20971800 chrX 20971861 20971876 5 76 33.0 27.0 30.0 0.2 89 chrX 20971787 intergenic not near genes chrX 20971832 intergenic not near genes chrX 20971876 intergenic not near genes chrX_5_20970001 chrX_20970001 RAL-646 1126 chrX 21042556 21042587 chrX 21045343 21045373 10 2786 14.5 26.5 20.5 0.5 2817 chrX 21042556 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045373 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-646 1127 chrX 21086130 21086165 chrX 21087159 21087173 jockey 6 1018 1.5 1.0 1.2 2.7 1043 chrX 21086130 intergenic not near genes chrX 21086652 intergenic not near genes chrX 21087173 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-646 1128 chrX 21253284 21253307 chrX 21253361 21253368 11 74 4.5 3.0 3.8 2.3 84 chrX 21253284 intron CG32521 - chrX 21253326 intron CG32521 - chrX 21253368 intron CG32521 - chrX_11_21250001 chrX_21250001 RAL-646 1129 chrX 21419705 21419737 chrX 21419794 21419826 5 88 0.0 1.5 0.8 2.8 121 chrX 21419705 intergenic not near genes chrX 21419766 intergenic not near genes chrX 21419826 intergenic not near genes chrX_5_21415001 chrX_21415001 RAL-646 1130 chrX 21516998 21517014 chrX 21517077 21517093 6 79 2.0 3.0 2.5 1.7 95 chrX 21516998 intron CR45082 - chrX 21517046 intron CR45082 - chrX 21517093 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-646 1131 chrX 22660568 22660589 chrX 22660652 22660668 4 82 4.5 0.0 2.2 1.2 100 chrX 22660568 intron CR44997 + chrX 22660618 intron CR44997 + chrX 22660668 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-646 1132 chrX 22697500 22697523 chrX 22701797 22701820 Juan 4 4297 1.5 3.0 2.2 1.2 4320 chrX 22697500 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701820 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-646 1133 chrX 22771517 22771539 chrX 22774808 22774808 297 4 3283 2.0 1.0 1.5 1.6 3291 chrX 22771517 intron CR44997 + chrX 22773162 intron CR44997 + chrX 22774808 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-646 1134 chrX 22798781 22798793 chrX 22798889 22798909 4 112 3.0 0.5 1.8 1.4 128 chrX 22798781 intergenic not near genes chrX 22798845 intergenic not near genes chrX 22798909 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-646 1135 chrX 22987110 22987133 chrX 22989768 22989787 Burdock 4 2657 0.0 0.5 0.2 3.3 2677 chrX 22987110 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989787 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-646 1136 chrY 975605 975820 chrY 975721 975924 8 132 97.5 106.0 101.8 0.1 319 chrY 975605 intergenic not near genes chrY 975764 intergenic not near genes chrY 975924 intergenic not near genes chrY_8_975001 chrY_975001 RAL-646