SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47492 chr2L 52566 52597 jockey 6 5105 5.0 3.5 4.2 1.2 5136 chr2L 47461 intron Cda5 - chr2L 50029 intron Cda5 - chr2L 52597 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-642 2 chr2L 371446 371458 chr2L 371524 371537 4 78 1.0 2.0 1.5 1.6 91 chr2L 371446 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371537 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-642 3 chr2L 459402 459432 chr2L 459482 459497 4 76 2.5 3.0 2.8 1.1 95 chr2L 459402 3` UTR CG4297 - chr2L 459450 3` UTR CG4297 - chr2L 459497 3` UTR CG4297 - chr2L_4_455001 chr2L_455001 RAL-642 4 chr2L 467358 467364 chr2L 467457 467462 4 98 3.5 1.0 2.2 1.2 104 chr2L 467358 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467462 intron CG4297 - chr2L_4_465001 chr2L_465001 RAL-642 5 chr2L 525258 525285 chr2L 525341 525368 5 83 1.0 3.5 2.2 1.6 110 chr2L 525258 intron ush + chr2L 525313 intron ush + chr2L 525368 intron ush + chr2L_5_525001 chr2L_525001 RAL-642 6 chr2L 544840 544854 chr2L 544922 544937 5 83 2.5 3.0 2.8 1.3 97 chr2L 544840 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544888 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544937 3` UTR Ets21C - chr2L_5_540001 chr2L_540001 RAL-642 7 chr2L 590337 590344 chr2L 590428 590436 4 92 4.0 4.5 4.2 0.8 99 chr2L 590337 intron Gsc - chr2L 590386 intron Gsc - chr2L 590436 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-642 8 chr2L 628493 628523 chr2L 628617 628647 9 124 2.0 5.0 3.5 2.0 154 chr2L 628493 intergenic CR45369 +,CG2839 + chr2L 628570 intergenic CR45369 +,CG2839 + chr2L 628647 intergenic CR45369 +,CG2839 + chr2L_9_625001 chr2L_625001 RAL-642 9 chr2L 686923 686944 chr2L 695957 695984 roo 4 9038 1.5 4.5 3.0 1.0 9061 chr2L 686923 intron ds - chr2L 691454 intron ds - chr2L 695984 intron ds - chr2L_4_690001 chr2L_690001 RAL-642 10 chr2L 770470 770492 chr2L 772245 772273 Bari1 7 1779 3.0 4.0 3.5 1.6 1803 chr2L 770470 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772273 intergenic CR44614 + chr2L_7_770001 chr2L_770001 RAL-642 11 chr2L 795264 795293 chr2L 795371 795390 10 106 2.5 0.5 1.5 4.0 126 chr2L 795264 intergenic not near genes chr2L 795327 intergenic not near genes chr2L 795390 intergenic not near genes chr2L_10_795001 chr2L_795001 RAL-642 12 chr2L 877841 877863 chr2L 877922 877944 9 81 3.0 6.0 4.5 1.6 103 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-642 13 chr2L 976882 976911 chr2L 984517 984547 roo 5 7634 1.5 0.5 1.0 2.5 7665 chr2L 976882 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-642 14 chr2L 996732 996752 chr2L 1005827 1005847 roo 4 9095 0.0 1.0 0.5 2.7 9115 chr2L 996732 intergenic not near genes chr2L 1001290 intergenic not near genes chr2L 1005847 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-642 15 chr2L 1035563 1035571 chr2L 1035640 1035648 5 77 3.0 6.5 4.8 0.9 85 chr2L 1035563 intron IA-2 - chr2L 1035606 intron IA-2 - chr2L 1035648 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-642 16 chr2L 1035573 1035591 chr2L 1035637 1035668 10 73 1.5 6.5 4.0 2.0 95 chr2L 1035573 intron IA-2 - chr2L 1035620 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_10_1035001 chr2L_1035001 RAL-642 17 chr2L 1114013 1114047 chr2L 1114225 1114259 4 212 0.5 1.0 0.8 2.2 246 chr2L 1114013 3` UTR CG14340 + chr2L 1114136 3` UTR CG14340 + chr2L 1114259 intergenic CG14340 +,Pino - chr2L_4_1110001 chr2L_1110001 RAL-642 18 chr2L 1205914 1205939 chr2L 1205993 1205995 5 74 0.5 2.5 1.5 2.0 81 chr2L 1205914 intergenic not near genes chr2L 1205954 intergenic not near genes chr2L 1205995 intergenic not near genes chr2L_5_1205001 chr2L_1205001 RAL-642 19 chr2L 1220129 1220162 chr2L 1227594 1227628 blood 12 7465 1.5 0.5 1.0 6.0 7499 chr2L 1220129 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_12_1220001 chr2L_1220001 RAL-642 20 chr2L 1261153 1261256 chr2L 1261224 1261335 4 78 0.0 0.0 0.0 4.0 182 chr2L 1261153 intron robo3 + chr2L 1261244 intron robo3 + chr2L 1261335 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-642 21 chr2L 1312886 1312898 chr2L 1312957 1312981 5 79 1.5 2.5 2.0 1.7 95 chr2L 1312886 intergenic not near genes chr2L 1312934 intergenic not near genes chr2L 1312981 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-642 22 chr2L 1327075 1327096 chr2L 1327151 1327172 5 76 2.5 4.0 3.2 1.2 97 chr2L 1327075 intergenic not near genes chr2L 1327124 intergenic not near genes chr2L 1327172 intergenic not near genes chr2L_5_1325001 chr2L_1325001 RAL-642 23 chr2L 1331071 1331092 chr2L 1331148 1331169 6 76 0.0 1.5 0.8 3.3 98 chr2L 1331071 intergenic not near genes chr2L 1331120 intergenic not near genes chr2L 1331169 intergenic not near genes chr2L_6_1330001 chr2L_1330001 RAL-642 24 chr2L 1436109 1436122 chr2L 1436189 1436202 6 79 4.0 1.5 2.8 1.6 93 chr2L 1436109 intergenic not near genes chr2L 1436156 intergenic not near genes chr2L 1436202 intergenic not near genes chr2L_6_1435001 chr2L_1435001 RAL-642 25 chr2L 1508051 1508272 chr2L 1508132 1508341 12 76 1.0 1.5 1.2 5.5 290 chr2L 1508051 intergenic not near genes chr2L 1508196 intergenic not near genes chr2L 1508341 intergenic not near genes chr2L_12_1505001 chr2L_1505001 RAL-642 26 chr2L 1536502 1536524 chr2L 1536633 1536640 7 128 0.0 3.0 1.5 2.8 138 chr2L 1536502 intergenic not near genes chr2L 1536571 intergenic not near genes chr2L 1536640 intergenic not near genes chr2L_7_1535001 chr2L_1535001 RAL-642 27 chr2L 1552689 1552697 chr2L 1552910 1552918 4 221 2.0 0.0 1.0 2.0 229 chr2L 1552689 intergenic not near genes chr2L 1552804 intergenic not near genes chr2L 1552918 intergenic not near genes chr2L_4_1550001 chr2L_1550001 RAL-642 28 chr2L 1568823 1568843 chr2L 1568922 1568933 6 97 7.0 3.0 5.0 1.0 110 chr2L 1568823 intron haf + chr2L 1568878 intron haf + chr2L 1568933 intron haf + chr2L_6_1565001 chr2L_1565001 RAL-642 29 chr2L 1570687 1570714 chr2L 1573559 1573586 F-element 6 2872 2.5 1.5 2.0 2.0 2899 chr2L 1570687 intron haf + chr2L 1572136 intron haf + chr2L 1573586 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-642 30 chr2L 1678981 1679009 chr2L 1686444 1686452 blood 4 7458 1.0 2.0 1.5 1.6 7471 chr2L 1678981 intron chinmo + chr2L 1682716 intron chinmo + chr2L 1686452 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-642 31 chr2L 1910544 1910569 chr2L 1910632 1910657 4 88 0.0 1.0 0.5 2.7 113 chr2L 1910544 intron CG7337 + chr2L 1910600 intron CG7337 + chr2L 1910657 intron CG7337 + chr2L_4_1910001 chr2L_1910001 RAL-642 32 chr2L 2075520 2075532 chr2L 2075602 2075609 6 83 3.0 3.5 3.2 1.4 89 chr2L 2075520 intron dpr3 - chr2L 2075564 intron dpr3 - chr2L 2075609 intron dpr3 - chr2L_6_2075001 chr2L_2075001 RAL-642 33 chr2L 2100377 2100408 chr2L 2109525 2109558 roo 10 9148 2.5 2.0 2.2 3.1 9181 chr2L 2100377 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-642 34 chr2L 2112121 2112130 chr2L 2119773 2119792 opus 4 7658 2.0 2.0 2.0 1.3 7671 chr2L 2112121 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119792 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-642 35 chr2L 2125512 2125533 chr2L 2125854 2125875 7 342 1.0 19.0 10.0 0.6 363 chr2L 2125512 intergenic not near genes chr2L 2125694 intergenic not near genes chr2L 2125875 intergenic not near genes chr2L_7_2125001 chr2L_2125001 RAL-642 36 chr2L 2197644 2197673 chr2L 2197721 2197750 6 75 7.0 3.5 5.2 1.0 106 chr2L 2197644 5` UTR CG34172 - chr2L 2197697 5` UTR CG34172 - chr2L 2197750 5` UTR CG34172 - chr2L_6_2195001 chr2L_2195001 RAL-642 37 chr2L 2348111 2348135 chr2L 2348192 2348217 8 81 1.5 1.5 1.5 3.2 106 chr2L 2348111 intron,intron CG9967 -,eys + chr2L 2348164 intron,intron CG9967 -,eys + chr2L 2348217 intron,intron CG9967 -,eys + chr2L_8_2345001 chr2L_2345001 RAL-642 38 chr2L 2372366 2372367 chr2L 2372449 2372453 6 85 2.5 1.0 1.8 2.1 87 chr2L 2372366 intergenic CG3609 - chr2L 2372410 intergenic CG3609 - chr2L 2372453 intergenic CG3609 - chr2L_6_2370001 chr2L_2370001 RAL-642 39 chr2L 2530022 2530043 chr2L 2530099 2530118 9 76 1.5 1.0 1.2 4.1 96 chr2L 2530022 intergenic not near genes chr2L 2530070 intergenic not near genes chr2L 2530118 intergenic not near genes chr2L_9_2530001 chr2L_2530001 RAL-642 40 chr2L 2543483 2543506 chr2L 2543591 2543614 8 106 5.5 4.5 5.0 1.3 131 chr2L 2543483 intergenic not near genes chr2L 2543548 intergenic not near genes chr2L 2543614 intergenic not near genes chr2L_8_2540001 chr2L_2540001 RAL-642 41 chr2L 2557833 2557843 chr2L 2557918 2557928 7 85 0.0 3.5 1.8 2.5 95 chr2L 2557833 intergenic not near genes chr2L 2557880 intergenic not near genes chr2L 2557928 intergenic not near genes chr2L_7_2555001 chr2L_2555001 RAL-642 42 chr2L 2587815 2587846 chr2L 2587893 2587923 5 74 1.5 2.0 1.8 1.8 108 chr2L 2587815 intergenic not near genes chr2L 2587869 intergenic not near genes chr2L 2587923 intergenic not near genes chr2L_5_2585001 chr2L_2585001 RAL-642 43 chr2L 2618043 2618066 chr2L 2618121 2618145 7 76 1.0 2.5 1.8 2.5 102 chr2L 2618043 intergenic not near genes chr2L 2618094 intergenic not near genes chr2L 2618145 intergenic not near genes chr2L_7_2615001 chr2L_2615001 RAL-642 44 chr2L 2661219 2661233 chr2L 2663034 2663040 I-element 4 1823 2.0 2.0 2.0 1.3 1821 chr2L 2661219 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663040 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-642 45 chr2L 2698878 2698893 chr2L 2698964 2698980 7 87 1.0 2.0 1.5 2.8 102 chr2L 2698878 intron CG31690 + chr2L 2698929 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-642 46 chr2L 2713518 2713550 chr2L 2713617 2713632 8 95 2.5 5.5 4.0 1.6 114 chr2L 2713518 intron CG31690 + chr2L 2713575 intron CG31690 + chr2L 2713632 intron CG31690 + chr2L_8_2710001 chr2L_2710001 RAL-642 47 chr2L 2921292 2921310 chr2L 2921594 2921614 5 301 1.0 1.5 1.2 2.3 322 chr2L 2921292 intron lilli + chr2L 2921453 intron lilli + chr2L 2921614 intron lilli + chr2L_5_2920001 chr2L_2920001 RAL-642 48 chr2L 2933300 2933321 chr2L 2935476 2935497 pogo 5 2175 4.5 1.5 3.0 1.2 2197 chr2L 2933300 intron lilli + chr2L 2934398 intron lilli + chr2L 2935497 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-642 49 chr2L 2937425 2937445 chr2L 2937502 2937522 4 77 4.0 2.5 3.2 1.0 97 chr2L 2937425 intron lilli + chr2L 2937474 intron lilli + chr2L 2937522 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-642 50 chr2L 3073030 3073064 chr2L 3078233 3078267 copia 10 5203 3.0 4.0 3.5 2.2 5237 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-642 51 chr2L 3186469 3186491 chr2L 3186555 3186577 5 86 1.5 1.0 1.2 2.3 108 chr2L 3186469 intron CG34393 - chr2L 3186523 intron CG34393 - chr2L 3186577 intron CG34393 - chr2L_5_3185001 chr2L_3185001 RAL-642 52 chr2L 3192208 3192233 chr2L 3192319 3192342 7 111 2.0 4.0 3.0 1.8 134 chr2L 3192208 exon CG34393 - chr2L 3192275 intron CG34393 - chr2L 3192342 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-642 53 chr2L 3251497 3251517 chr2L 3259062 3259082 springer 5 7565 4.0 2.0 3.0 1.2 7585 chr2L 3251497 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-642 54 chr2L 3523034 3523054 chr2L 3523146 3523160 6 111 2.0 3.0 2.5 1.7 126 chr2L 3523034 exon Sr-CIV - chr2L 3523097 intron Sr-CIV - chr2L 3523160 exon Sr-CIV - chr2L_6_3520001 chr2L_3520001 RAL-642 55 chr2L 3603338 3603362 chr2L 3603414 3603439 9 75 3.0 1.0 2.0 3.0 101 chr2L 3603338 intergenic not near genes chr2L 3603388 intergenic not near genes chr2L 3603439 intergenic not near genes chr2L_9_3600001 chr2L_3600001 RAL-642 56 chr2L 3634105 3634133 chr2L 3634187 3634215 10 82 2.0 3.5 2.8 2.6 110 chr2L 3634105 intron for - chr2L 3634160 intron for - chr2L 3634215 intron for - chr2L_10_3630001 chr2L_3630001 RAL-642 57 chr2L 3663320 3663338 chr2L 3663397 3663417 5 78 1.0 1.0 1.0 2.5 97 chr2L 3663320 intron CG34340 + chr2L 3663368 intron CG34340 + chr2L 3663417 intron CG34340 + chr2L_5_3660001 chr2L_3660001 RAL-642 58 chr2L 3682259 3682273 chr2L 3682340 3682355 7 82 0.0 2.5 1.2 3.2 96 chr2L 3682259 intron CG34340 + chr2L 3682307 intron CG34340 + chr2L 3682355 intron CG34340 + chr2L_7_3680001 chr2L_3680001 RAL-642 59 chr2L 3785476 3785498 chr2L 3785549 3785574 6 75 14.0 10.0 12.0 0.5 98 chr2L 3785476 3` UTR CG31960 + chr2L 3785525 3` UTR CG31960 + chr2L 3785574 3` UTR CG31960 + chr2L_6_3785001 chr2L_3785001 RAL-642 60 chr2L 3819030 3819054 chr2L 3819112 3819136 6 82 3.5 0.0 1.8 2.1 106 chr2L 3819030 intergenic CR44077 + chr2L 3819083 intergenic not near genes chr2L 3819136 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-642 61 chr2L 3820671 3820691 chr2L 3820997 3821018 6 326 0.5 3.0 1.8 2.1 347 chr2L 3820671 intergenic not near genes chr2L 3820844 intergenic not near genes chr2L 3821018 intergenic not near genes chr2L_6_3820001 chr2L_3820001 RAL-642 62 chr2L 3891639 3891916 chr2L 3891715 3892001 7 83 3.0 3.0 3.0 1.8 362 chr2L 3891639 intron capu - chr2L 3891820 intron capu - chr2L 3892001 intron capu - chr2L_7_3890001 chr2L_3890001 RAL-642 63 chr2L 3906037 3906068 chr2L 3906182 3906202 9 142 3.0 2.0 2.5 2.6 165 chr2L 3906037 intron fred - chr2L 3906120 intron fred - chr2L 3906202 intron fred - chr2L_9_3905001 chr2L_3905001 RAL-642 64 chr2L 3908393 3908427 chr2L 3908651 3908686 14 253 1.0 3.0 2.0 4.7 293 chr2L 3908393 intron fred - chr2L 3908540 intron fred - chr2L 3908686 intron fred - chr2L_14_3905001 chr2L_3905001 RAL-642 65 chr2L 4066041 4066065 chr2L 4068866 4068889 Juan 6 2824 2.5 3.0 2.8 1.6 2848 chr2L 4066041 intron ed + chr2L 4067465 intron ed + chr2L 4068889 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-642 66 chr2L 4069277 4069286 chr2L 4069487 4069498 7 212 3.5 2.0 2.8 1.8 221 chr2L 4069277 intron ed + chr2L 4069388 intron ed + chr2L 4069498 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-642 67 chr2L 4166379 4166407 chr2L 4166458 4166490 12 82 1.0 1.0 1.0 6.0 111 chr2L 4166379 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_12_4165001 chr2L_4165001 RAL-642 68 chr2L 4184497 4184507 chr2L 4184815 4184826 5 319 0.0 1.0 0.5 3.3 329 chr2L 4184497 intergenic not near genes chr2L 4184662 intergenic not near genes chr2L 4184826 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-642 69 chr2L 4192984 4193013 chr2L 4193065 4193094 6 80 0.5 3.0 1.8 2.1 110 chr2L 4192984 intron CG3714 - chr2L 4193039 intron CG3714 - chr2L 4193094 intron CG3714 - chr2L_6_4190001 chr2L_4190001 RAL-642 70 chr2L 4262591 4262610 chr2L 4262851 4262869 5 260 3.0 3.0 3.0 1.2 278 chr2L 4262591 intergenic not near genes chr2L 4262730 intergenic not near genes chr2L 4262869 intergenic not near genes chr2L_5_4260001 chr2L_4260001 RAL-642 71 chr2L 4351473 4351495 chr2L 4351549 4351571 5 75 5.5 0.5 3.0 1.2 98 chr2L 4351473 intergenic CR44700 + chr2L 4351522 intergenic CR44700 + chr2L 4351571 intergenic CR44700 + chr2L_5_4350001 chr2L_4350001 RAL-642 72 chr2L 4422705 4422710 chr2L 4423554 4423563 4 852 5.0 5.5 5.2 0.6 858 chr2L 4422705 intron CG15431 - chr2L 4423134 intron CG15431 - chr2L 4423563 intron CG15431 - chr2L_4_4420001 chr2L_4420001 RAL-642 73 chr2L 4601706 4601736 chr2L 4609143 4609177 mdg1 6 7440 2.0 4.0 3.0 1.5 7471 chr2L 4601706 intron dp - chr2L 4605442 intron dp - chr2L 4609177 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-642 74 chr2L 4661489 4661500 chr2L 4661568 4661576 4 78 3.0 1.0 2.0 1.3 87 chr2L 4661489 intergenic not near genes chr2L 4661532 intergenic not near genes chr2L 4661576 intergenic not near genes chr2L_4_4660001 chr2L_4660001 RAL-642 75 chr2L 4675632 4675652 chr2L 4675711 4675731 8 78 1.5 3.5 2.5 2.3 99 chr2L 4675632 intergenic not near genes chr2L 4675682 intergenic not near genes chr2L 4675731 intergenic not near genes chr2L_8_4675001 chr2L_4675001 RAL-642 76 chr2L 4819497 4819504 chr2L 4819620 4819627 4 123 4.0 1.5 2.8 1.1 130 chr2L 4819497 intergenic not near genes chr2L 4819562 intergenic not near genes chr2L 4819627 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-642 77 chr2L 4918183 4918193 chr2L 4923256 4923266 jockey 5 5073 2.0 1.5 1.8 1.8 5083 chr2L 4918183 intron hoe1 - chr2L 4920724 intron hoe1 - chr2L 4923266 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-642 78 chr2L 4996091 4996114 chr2L 4996168 4996191 4 77 2.0 0.5 1.2 1.8 100 chr2L 4996091 intron Rtnl1 - chr2L 4996141 intron Rtnl1 - chr2L 4996191 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-642 79 chr2L 5027964 5027989 chr2L 5028048 5028072 4 84 0.0 2.0 1.0 2.0 108 chr2L 5027964 intron vkg - chr2L 5028018 intron vkg - chr2L 5028072 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-642 80 chr2L 5083755 5083777 chr2L 5083830 5083852 4 75 2.5 0.0 1.2 1.8 97 chr2L 5083755 intron pgant5 - chr2L 5083804 intron pgant5 - chr2L 5083852 intron pgant5 - chr2L_4_5080001 chr2L_5080001 RAL-642 81 chr2L 5342785 5342793 chr2L 5345147 5345173 Doc 4 2376 3.5 2.5 3.0 1.0 2388 chr2L 5342785 intergenic not near genes chr2L 5343979 intergenic not near genes chr2L 5345173 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-642 82 chr2L 5508529 5508562 chr2L 5508605 5508638 10 76 0.5 1.0 0.8 5.6 109 chr2L 5508529 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508638 intergenic not near genes chr2L_10_5505001 chr2L_5505001 RAL-642 83 chr2L 5720260 5720290 chr2L 5720347 5720357 8 84 2.0 1.0 1.5 3.2 97 chr2L 5720260 intron CG11149 - chr2L 5720308 intron CG11149 - chr2L 5720357 intron CG11149 - chr2L_8_5720001 chr2L_5720001 RAL-642 84 chr2L 5819649 5819686 chr2L 5819736 5819773 12 86 1.5 1.0 1.2 5.5 124 chr2L 5819649 intergenic not near genes chr2L 5819711 intergenic not near genes chr2L 5819773 intergenic not near genes chr2L_12_5815001 chr2L_5815001 RAL-642 85 chr2L 5827715 5827735 chr2L 5836723 5836743 roo 8 9005 7.0 4.0 5.5 1.2 9028 chr2L 5827715 intron TrissinR + chr2L 5832229 intron TrissinR + chr2L 5836743 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-642 86 chr2L 5878758 5878783 chr2L 5878834 5878854 11 74 3.5 3.0 3.2 2.6 96 chr2L 5878758 intron rau - chr2L 5878806 intron rau - chr2L 5878854 intron rau - chr2L_11_5875001 chr2L_5875001 RAL-642 87 chr2L 5904460 5904472 chr2L 5904540 5904552 4 80 1.5 0.0 0.8 2.2 92 chr2L 5904460 intron CG9021 - chr2L 5904506 intron CG9021 - chr2L 5904552 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-642 88 chr2L 5944555 5944578 chr2L 5948997 5949022 4 4449 27.5 8.0 17.8 0.2 4467 chr2L 5944555 intron Gpdh + chr2L 5946788 intron Gpdh + chr2L 5949022 intergenic Gpdh +,CG9044 + chr2L_4_5945001 chr2L_5945001 RAL-642 89 chr2L 6136575 6136582 chr2L 6136672 6136679 4 97 0.0 5.0 2.5 1.1 104 chr2L 6136575 intergenic not near genes chr2L 6136627 intergenic not near genes chr2L 6136679 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-642 90 chr2L 6185440 6185470 chr2L 6185518 6185525 7 71 2.0 2.0 2.0 2.3 85 chr2L 6185440 intron CG34380 + chr2L 6185482 intron CG34380 + chr2L 6185525 intron CG34380 + chr2L_7_6185001 chr2L_6185001 RAL-642 91 chr2L 6283942 6283971 chr2L 6284053 6284082 6 111 1.5 1.0 1.2 2.7 140 chr2L 6283942 intron Ddr + chr2L 6284012 intron Ddr + chr2L 6284082 intron Ddr + chr2L_6_6280001 chr2L_6280001 RAL-642 92 chr2L 6286390 6286405 chr2L 6286484 6286499 7 92 9.5 3.0 6.2 1.0 109 chr2L 6286390 intron Ddr + chr2L 6286444 intron Ddr + chr2L 6286499 intron Ddr + chr2L_7_6285001 chr2L_6285001 RAL-642 93 chr2L 6318735 6318761 chr2L 6318889 6318915 6 154 1.5 2.0 1.8 2.1 180 chr2L 6318735 intron Ddr + chr2L 6318825 intron Ddr + chr2L 6318915 intron Ddr + chr2L_6_6315001 chr2L_6315001 RAL-642 94 chr2L 6337601 6337624 chr2L 6337735 6337757 7 133 3.5 6.0 4.8 1.2 156 chr2L 6337601 intron Pez - chr2L 6337679 intron Pez - chr2L 6337757 intron Pez - chr2L_7_6335001 chr2L_6335001 RAL-642 95 chr2L 6363177 6363180 chr2L 6366088 6366102 Burdock 4 2919 2.5 4.0 3.2 1.0 2925 chr2L 6363177 intergenic not near genes chr2L 6364640 intergenic not near genes chr2L 6366102 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-642 96 chr2L 6426858 6426876 chr2L 6445115 6445136 roo 4 18259 3.0 3.5 3.2 1.0 18278 chr2L 6426858 3` UTR CG9527 - chr2L 6435997 intron CG9527 - chr2L 6445136 exon CG9527 - chr2L_4_6435001 chr2L_6435001 RAL-642 97 chr2L 6426879 6426884 chr2L 6445114 6445144 roo 4 18253 2.0 3.5 2.8 1.1 18265 chr2L 6426879 3` UTR CG9527 - chr2L 6436012 intron CG9527 - chr2L 6445144 exon CG9527 - chr2L_4_6435001 chr2L_6435001 RAL-642 98 chr2L 6483669 6483677 chr2L 6483586 6483734 5 78 0.5 10.0 5.2 0.8 65 chr2L 6483669 exon DLP + chr2L 6483702 exon DLP + chr2L 6483734 exon DLP + chr2L_5_6480001 chr2L_6480001 RAL-642 99 chr2L 6544383 6544395 chr2L 6544475 6544487 6 90 3.0 4.5 3.8 1.2 104 chr2L 6544383 intron eya - chr2L 6544435 intron eya - chr2L 6544487 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-642 100 chr2L 6590102 6590122 chr2L 6590180 6590200 4 74 2.0 1.0 1.5 1.6 98 chr2L 6590102 intron CG11319 - chr2L 6590151 intron CG11319 - chr2L 6590200 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-642 101 chr2L 6640920 6640938 chr2L 6641012 6641015 7 91 3.5 2.0 2.8 1.8 95 chr2L 6640920 exon CG31635 - chr2L 6640968 intron CG31635 - chr2L 6641015 intron CG31635 - chr2L_7_6640001 chr2L_6640001 RAL-642 102 chr2L 6655527 6655542 chr2L 6655888 6655903 4 357 1.5 4.5 3.0 1.0 376 chr2L 6655527 exon CG31633 - chr2L 6655715 exon CG31633 - chr2L 6655903 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-642 103 chr2L 6771988 6772004 chr2L 6772074 6772075 7 83 3.5 2.0 2.8 1.8 87 chr2L 6771988 intron CG11321 - chr2L 6772032 intron CG11321 - chr2L 6772075 intron CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-642 104 chr2L 6850390 6850413 chr2L 6850473 6850496 7 83 1.5 3.0 2.2 2.2 106 chr2L 6850390 intergenic not near genes chr2L 6850443 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_7_6850001 chr2L_6850001 RAL-642 105 chr2L 6874831 6874861 chr2L 6874909 6874924 4 73 3.5 3.0 3.2 1.0 93 chr2L 6874831 intergenic Nlg2 +,CR44914 + chr2L 6874878 intergenic Nlg2 +,CR44914 + chr2L 6874924 5` UTR Nlg2 + chr2L_4_6870001 chr2L_6870001 RAL-642 106 chr2L 6969281 6969308 chr2L 6969357 6969388 13 79 3.0 3.0 3.0 3.2 107 chr2L 6969281 3` UTR snRNP-U1-70K - chr2L 6969334 3` UTR snRNP-U1-70K - chr2L 6969388 3` UTR snRNP-U1-70K - chr2L_13_6965001 chr2L_6965001 RAL-642 107 chr2L 7051154 7051160 chr2L 7051229 7051236 4 75 0.0 2.5 1.2 1.8 82 chr2L 7051154 intron milt + chr2L 7051195 intron milt + chr2L 7051236 intron milt + chr2L_4_7050001 chr2L_7050001 RAL-642 108 chr2L 7111763 7111783 chr2L 7111848 7111868 7 84 0.5 0.0 0.2 5.8 105 chr2L 7111763 intron Pvf3 - chr2L 7111816 intron Pvf3 - chr2L 7111868 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-642 109 chr2L 7258495 7258516 chr2L 7258670 7258691 4 174 0.0 3.5 1.8 1.4 196 chr2L 7258495 intron Wnt4 - chr2L 7258593 intron Wnt4 - chr2L 7258691 intron Wnt4 - chr2L_4_7255001 chr2L_7255001 RAL-642 110 chr2L 7301297 7301329 chr2L 7301380 7301412 10 83 6.5 3.5 5.0 1.7 115 chr2L 7301297 intergenic not near genes chr2L 7301354 intergenic not near genes chr2L 7301412 intergenic not near genes chr2L_10_7300001 chr2L_7300001 RAL-642 111 chr2L 7325926 7325941 chr2L 7326011 7326026 5 82 2.0 0.5 1.2 2.3 100 chr2L 7325926 intergenic not near genes chr2L 7325976 intergenic not near genes chr2L 7326026 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-642 112 chr2L 7629165 7629187 chr2L 7629249 7629264 4 84 0.0 4.0 2.0 1.3 99 chr2L 7629165 intergenic not near genes chr2L 7629214 intergenic not near genes chr2L 7629264 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-642 113 chr2L 7867563 7867596 chr2L 7867657 7867690 8 94 3.0 1.5 2.2 2.5 127 chr2L 7867563 intron Proc - chr2L 7867626 intron Proc - chr2L 7867690 intron Proc - chr2L_8_7865001 chr2L_7865001 RAL-642 114 chr2L 7959041 7959055 chr2L 7960452 7960466 pogo 7 1411 2.5 0.0 1.2 3.2 1425 chr2L 7959041 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960466 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-642 115 chr2L 7977089 7977109 chr2L 7984064 7984084 297 11 6975 4.0 0.5 2.2 3.4 6995 chr2L 7977089 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 RAL-642 116 chr2L 8044104 8044131 chr2L 8044183 8044210 6 78 0.5 3.5 2.0 2.0 106 chr2L 8044104 intron CG7466 + chr2L 8044157 intron CG7466 + chr2L 8044210 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-642 117 chr2L 8184922 8184955 chr2L 8185013 8185041 6 90 0.5 2.5 1.5 2.4 119 chr2L 8184922 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185041 intron Piezo + chr2L_6_8180001 chr2L_8180001 RAL-642 118 chr2L 8336937 8336957 chr2L 8337016 8337035 5 79 0.0 2.5 1.2 2.3 98 chr2L 8336937 intergenic not near genes chr2L 8336986 intergenic not near genes chr2L 8337035 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-642 119 chr2L 8349608 8349629 chr2L 8349713 8349732 7 105 2.0 3.5 2.8 1.8 124 chr2L 8349608 exon CG7778 + chr2L 8349670 intron CG7778 + chr2L 8349732 intron CG7778 + chr2L_7_8345001 chr2L_8345001 RAL-642 120 chr2L 8452431 8452454 chr2L 8461601 8461625 roo 6 9171 1.0 4.5 2.8 1.6 9194 chr2L 8452431 intron fu12 - chr2L 8457028 intron fu12 - chr2L 8461625 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-642 121 chr2L 8723122 8723144 chr2L 8731490 8731521 Tirant 13 8376 1.0 1.0 1.0 6.5 8399 chr2L 8723122 intron raw - chr2L 8727322 intron raw - chr2L 8731521 intron raw - chr2L_13_8725001 chr2L_8725001 RAL-642 122 chr2L 8815751 8815776 chr2L 8815830 8815857 11 80 1.0 4.0 2.5 3.1 106 chr2L 8815751 intergenic not near genes chr2L 8815804 intergenic not near genes chr2L 8815857 intergenic not near genes chr2L_11_8815001 chr2L_8815001 RAL-642 123 chr2L 8993214 8993244 chr2L 8993315 8993345 9 104 20.5 19.5 20.0 0.4 131 chr2L 8993214 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993345 3` UTR CG9555 + chr2L_9_8990001 chr2L_8990001 RAL-642 124 chr2L 9000286 9000310 chr2L 9007796 9007819 roo 7 7509 4.5 3.0 3.8 1.5 7533 chr2L 9000286 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_7_9000001 chr2L_9000001 RAL-642 125 chr2L 9084337 9084339 chr2L 16217660 16217660 4 7133322 16.5 23.0 19.8 0.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-642 126 chr2L 9105750 9105774 chr2L 9105901 9105925 6 150 3.5 0.5 2.0 2.0 175 chr2L 9105750 intergenic not near genes chr2L 9105838 intergenic not near genes chr2L 9105925 intergenic not near genes chr2L_6_9105001 chr2L_9105001 RAL-642 127 chr2L 9143329 9143343 chr2L 9143426 9143442 5 99 2.0 2.5 2.2 1.6 113 chr2L 9143329 intron CG32982 + chr2L 9143386 intron CG32982 + chr2L 9143442 intron CG32982 + chr2L_5_9140001 chr2L_9140001 RAL-642 128 chr2L 9268201 9268236 chr2L 9268278 9268312 8 73 3.0 3.5 3.2 1.9 111 chr2L 9268201 intron Ggamma30A + chr2L 9268256 intron Ggamma30A + chr2L 9268312 intron Ggamma30A + chr2L_8_9265001 chr2L_9265001 RAL-642 129 chr2L 9285025 9285046 chr2L 9285101 9285120 5 73 3.0 2.0 2.5 1.4 95 chr2L 9285025 intron Ggamma30A + chr2L 9285072 intron Ggamma30A + chr2L 9285120 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-642 130 chr2L 9361552 9361574 chr2L 9361633 9361655 6 81 3.5 0.0 1.8 2.1 103 chr2L 9361552 intergenic not near genes chr2L 9361604 intergenic not near genes chr2L 9361655 intergenic not near genes chr2L_6_9360001 chr2L_9360001 RAL-642 131 chr2L 9444386 9444404 chr2L 9444970 9444988 5 582 3.0 4.5 3.8 1.0 602 chr2L 9444386 intron numb + chr2L 9444687 intron numb + chr2L 9444988 intron numb + chr2L_5_9440001 chr2L_9440001 RAL-642 132 chr2L 9730981 9731006 chr2L 9731064 9731070 5 78 1.0 4.5 2.8 1.3 89 chr2L 9730981 intron Nckx30C - chr2L 9731026 intron Nckx30C - chr2L 9731070 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-642 133 chr2L 9861618 9861645 chr2L 9861805 9861807 5 182 2.0 3.0 2.5 1.4 189 chr2L 9861618 intron nAChRalpha6 - chr2L 9861712 intron nAChRalpha6 - chr2L 9861807 intron nAChRalpha6 - chr2L_5_9860001 chr2L_9860001 RAL-642 134 chr2L 9973724 9973758 chr2L 9980843 9980875 HMS-Beagle 10 7113 3.0 3.0 3.0 2.5 7151 chr2L 9973724 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-642 135 chr2L 9982211 9982232 chr2L 9982314 9982334 4 103 0.0 1.0 0.5 2.7 123 chr2L 9982211 intergenic not near genes chr2L 9982272 intergenic not near genes chr2L 9982334 intergenic not near genes chr2L_4_9980001 chr2L_9980001 RAL-642 136 chr2L 10051737 10051753 chr2L 10051813 10051835 6 82 3.0 1.5 2.2 1.9 98 chr2L 10051737 5` UTR CR44874 + chr2L 10051786 5` UTR CR44874 + chr2L 10051835 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-642 137 chr2L 10156330 10156355 chr2L 10163800 10163823 blood 9 7468 2.5 3.0 2.8 2.4 7493 chr2L 10156330 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163823 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-642 138 chr2L 10175898 10175930 chr2L 10175995 10176026 10 97 0.5 2.5 1.5 4.0 128 chr2L 10175898 intron CG44153 - chr2L 10175962 intron CG44153 - chr2L 10176026 intron CG44153 - chr2L_10_10175001 chr2L_10175001 RAL-642 139 chr2L 10490277 10490309 chr2L 10490358 10490388 8 81 1.0 2.0 1.5 3.2 111 chr2L 10490277 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490388 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_8_10490001 chr2L_10490001 RAL-642 140 chr2L 10887399 10887403 chr2L 10887485 10887486 6 86 7.5 0.0 3.8 1.2 87 chr2L 10887399 intergenic CR44490 +,CG14071 - chr2L 10887442 intergenic CG14071 -,CR44490 + chr2L 10887486 intergenic CG14071 -,CR44490 + chr2L_6_10885001 chr2L_10885001 RAL-642 141 chr2L 10887411 10887426 chr2L 10887484 10887518 7 86 5.5 0.0 2.8 1.8 107 chr2L 10887411 intergenic CR44490 +,CG14071 - chr2L 10887464 intergenic CG14071 -,CR44490 + chr2L 10887518 intergenic CG14071 -,CR44490 + chr2L_7_10885001 chr2L_10885001 RAL-642 142 chr2L 10946952 10946973 chr2L 10956167 10956188 roo 9 9215 5.0 5.0 5.0 1.5 9236 chr2L 10946952 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-642 143 chr2L 11224059 11224079 chr2L 11224170 11224190 4 111 1.0 1.0 1.0 2.0 131 chr2L 11224059 intron ab + chr2L 11224124 intron ab + chr2L 11224190 intron ab + chr2L_4_11220001 chr2L_11220001 RAL-642 144 chr2L 11335702 11335731 chr2L 11335780 11335809 5 77 1.0 2.0 1.5 2.0 107 chr2L 11335702 intergenic not near genes chr2L 11335756 intergenic not near genes chr2L 11335809 intergenic not near genes chr2L_5_11335001 chr2L_11335001 RAL-642 145 chr2L 11418666 11418688 chr2L 11418745 11418766 5 79 1.5 8.0 4.8 0.9 100 chr2L 11418666 intergenic not near genes chr2L 11418716 intergenic not near genes chr2L 11418766 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-642 146 chr2L 11455172 11455202 chr2L 11455246 11455279 11 76 2.5 3.5 3.0 2.8 107 chr2L 11455172 intergenic not near genes chr2L 11455226 intergenic not near genes chr2L 11455279 intergenic not near genes chr2L_11_11455001 chr2L_11455001 RAL-642 147 chr2L 11536720 11536740 chr2L 11536801 11536806 4 72 3.0 0.0 1.5 1.6 86 chr2L 11536720 3` UTR CG43438 + chr2L 11536763 3` UTR CG43438 + chr2L 11536806 3` UTR CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-642 148 chr2L 11537977 11538011 chr2L 11538070 11538094 12 83 0.5 1.5 1.0 6.0 117 chr2L 11537977 intergenic not near genes chr2L 11538036 intergenic not near genes chr2L 11538094 intergenic not near genes chr2L_12_11535001 chr2L_11535001 RAL-642 149 chr2L 11561729 11561752 chr2L 11561811 11561838 12 85 3.0 2.5 2.8 3.2 109 chr2L 11561729 5` UTR CR44495 + chr2L 11561784 5` UTR CR44495 + chr2L 11561838 5` UTR CR44495 + chr2L_12_11560001 chr2L_11560001 RAL-642 150 chr2L 11563645 11563667 chr2L 11568838 11568871 copia 5 5202 5.0 1.5 3.2 1.2 5226 chr2L 11563645 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-642 151 chr2L 11605232 11605258 chr2L 11605325 11605342 6 89 1.5 1.5 1.5 2.4 110 chr2L 11605232 intron kek2 + chr2L 11605287 intron kek2 + chr2L 11605342 intron kek2 + chr2L_6_11605001 chr2L_11605001 RAL-642 152 chr2L 11650563 11650594 chr2L 11650647 11650678 6 84 0.5 3.0 1.8 2.1 115 chr2L 11650563 intergenic not near genes chr2L 11650620 intergenic not near genes chr2L 11650678 intergenic not near genes chr2L_6_11650001 chr2L_11650001 RAL-642 153 chr2L 11707051 11707080 chr2L 11707154 11707185 9 105 1.5 0.5 1.0 4.5 134 chr2L 11707051 intergenic not near genes chr2L 11707118 intergenic not near genes chr2L 11707185 intergenic not near genes chr2L_9_11705001 chr2L_11705001 RAL-642 154 chr2L 11713508 11713536 chr2L 11720975 11721004 blood 12 7467 3.5 2.0 2.8 3.2 7496 chr2L 11713508 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-642 155 chr2L 11862360 11862391 chr2L 11862453 11862484 5 93 0.0 2.5 1.2 2.3 124 chr2L 11862360 intron Pde1c - chr2L 11862422 intron Pde1c - chr2L 11862484 intron Pde1c - chr2L_5_11860001 chr2L_11860001 RAL-642 156 chr2L 12033596 12033630 chr2L 12033675 12033709 7 75 3.0 3.0 3.0 1.8 113 chr2L 12033596 3` UTR dmGlut + chr2L 12033652 3` UTR dmGlut + chr2L 12033709 3` UTR dmGlut + chr2L_7_12030001 chr2L_12030001 RAL-642 157 chr2L 12234031 12234066 chr2L 12234126 12234161 6 92 1.5 1.5 1.5 2.4 130 chr2L 12234031 intron aret + chr2L 12234096 intron aret + chr2L 12234161 intron aret + chr2L_6_12230001 chr2L_12230001 RAL-642 158 chr2L 12339736 12339757 chr2L 12339855 12339890 6 130 0.0 1.5 0.8 3.3 154 chr2L 12339736 intergenic CG31862 + chr2L 12339813 intergenic CG31862 + chr2L 12339890 intergenic CG31862 + chr2L_6_12335001 chr2L_12335001 RAL-642 159 chr2L 12349631 12349657 chr2L 12349725 12349751 4 94 3.5 2.0 2.8 1.1 120 chr2L 12349631 intron bru-2 + chr2L 12349691 intron bru-2 + chr2L 12349751 intron bru-2 + chr2L_4_12345001 chr2L_12345001 RAL-642 160 chr2L 12487888 12487917 chr2L 12487968 12487998 4 80 3.0 1.0 2.0 1.3 110 chr2L 12487888 intron bun - chr2L 12487943 intron bun - chr2L 12487998 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-642 161 chr2L 12653796 12653805 chr2L 12653913 12653922 4 117 1.5 2.0 1.8 1.4 126 chr2L 12653796 intergenic not near genes chr2L 12653859 intergenic not near genes chr2L 12653922 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-642 162 chr2L 12728937 12728945 chr2L 12729177 12729185 pogo 5 240 1.5 7.5 4.5 0.9 248 chr2L 12728937 intron MRP + chr2L 12729061 intron MRP + chr2L 12729185 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-642 163 chr2L 12739173 12739201 chr2L 12743954 12743982 Doc 6 4780 3.0 3.0 3.0 1.5 4809 chr2L 12739173 exon MRP + chr2L 12741578 intron MRP + chr2L 12743982 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-642 164 chr2L 12861695 12861728 chr2L 12863162 12863195 hobo 10 1466 5.0 2.5 3.8 2.1 1500 chr2L 12861695 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-642 165 chr2L 12890756 12890770 chr2L 12890843 12890857 4 86 0.5 3.5 2.0 1.3 101 chr2L 12890756 intergenic not near genes chr2L 12890806 intergenic not near genes chr2L 12890857 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-642 166 chr2L 12933849 12933876 chr2L 12941315 12941343 blood 7 7467 3.5 2.0 2.8 1.8 7494 chr2L 12933849 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941343 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-642 167 chr2L 13036242 13036252 chr2L 13036482 13036494 X-element 5 242 2.0 1.5 1.8 1.8 252 chr2L 13036242 intron CG9932 - chr2L 13036368 intron CG9932 - chr2L 13036494 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-642 168 chr2L 13080129 13080154 chr2L 13080208 13080233 9 77 1.0 1.5 1.2 4.1 104 chr2L 13080129 intergenic not near genes chr2L 13080181 intergenic not near genes chr2L 13080233 intergenic not near genes chr2L_9_13080001 chr2L_13080001 RAL-642 169 chr2L 13241950 13241963 chr2L 13244342 13244355 BS 6 2392 1.5 2.0 1.8 2.1 2405 chr2L 13241950 5` UTR CR45330 + chr2L 13243152 intron CR45330 + chr2L 13244355 5` UTR CR45330 + chr2L_6_13240001 chr2L_13240001 RAL-642 170 chr2L 13266378 13266411 chr2L 13266465 13266484 9 83 2.5 3.5 3.0 2.2 106 chr2L 13266378 intron CG44085 + chr2L 13266431 intron CG44085 + chr2L 13266484 intron CG44085 + chr2L_9_13265001 chr2L_13265001 RAL-642 171 chr2L 13405647 13405679 chr2L 13410444 13410474 Doc 12 4796 1.5 3.0 2.2 3.8 4827 chr2L 13405647 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-642 172 chr2L 13622139 13622164 chr2L 13622238 13622260 5 97 2.0 1.0 1.5 2.0 121 chr2L 13622139 intron kuz + chr2L 13622200 intron kuz + chr2L 13622260 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-642 173 chr2L 13699566 13699587 chr2L 13699643 13699663 8 75 1.0 4.0 2.5 2.3 97 chr2L 13699566 intron CG31814 - chr2L 13699614 intron CG31814 - chr2L 13699663 intron CG31814 - chr2L_8_13695001 chr2L_13695001 RAL-642 174 chr2L 13761829 13761835 chr2L 13762913 13762946 Doc 4 1104 3.5 4.5 4.0 0.8 1117 chr2L 13761829 intron TM9SF4 + chr2L 13762388 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-642 175 chr2L 13853089 13853115 chr2L 13862239 13862265 roo 8 9150 4.0 0.5 2.2 2.5 9176 chr2L 13853089 intron CenG1A + chr2L 13857677 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_8_13855001 chr2L_13855001 RAL-642 176 chr2L 13976954 13976979 chr2L 13977249 13977274 5 295 2.0 2.5 2.2 1.6 320 chr2L 13976954 intergenic Cyp28a5 + chr2L 13977114 intergenic Cyp28a5 + chr2L 13977274 intergenic Cyp28a5 + chr2L_5_13975001 chr2L_13975001 RAL-642 177 chr2L 14005181 14005192 chr2L 14005259 14005265 4 76 4.5 3.5 4.0 0.8 84 chr2L 14005181 intergenic not near genes chr2L 14005223 intergenic not near genes chr2L 14005265 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-642 178 chr2L 14118673 14118687 chr2L 14118772 14118786 4 96 0.5 4.5 2.5 1.1 113 chr2L 14118673 intergenic not near genes chr2L 14118730 intergenic not near genes chr2L 14118786 intergenic not near genes chr2L_4_14115001 chr2L_14115001 RAL-642 179 chr2L 14159172 14159184 chr2L 14159235 14159265 7 77 1.5 2.0 1.8 2.5 93 chr2L 14159172 3` UTR CG17341 + chr2L 14159218 3` UTR CG17341 + chr2L 14159265 3` UTR CG17341 + chr2L_7_14155001 chr2L_14155001 RAL-642 180 chr2L 14205173 14205207 chr2L 14205438 14205468 4 264 3.0 2.5 2.8 1.1 295 chr2L 14205173 intron Dyrk2 - chr2L 14205320 intron Dyrk2 - chr2L 14205468 intron Dyrk2 - chr2L_4_14205001 chr2L_14205001 RAL-642 181 chr2L 14246289 14246304 chr2L 14246367 14246381 6 77 0.0 0.0 0.0 6.0 92 chr2L 14246289 intergenic not near genes chr2L 14246335 intergenic not near genes chr2L 14246381 intergenic not near genes chr2L_6_14245001 chr2L_14245001 RAL-642 182 chr2L 14258390 14258413 chr2L 14258480 14258501 4 90 1.5 2.5 2.0 1.3 111 chr2L 14258390 intergenic not near genes chr2L 14258446 intergenic not near genes chr2L 14258501 intergenic not near genes chr2L_4_14255001 chr2L_14255001 RAL-642 183 chr2L 14396203 14396225 chr2L 14398959 14398980 5 2756 11.0 11.0 11.0 0.4 2777 chr2L 14396203 intron elB - chr2L 14397592 intron elB - chr2L 14398980 intron elB - chr2L_5_14395001 chr2L_14395001 RAL-642 184 chr2L 14396032 14396057 chr2L 14399147 14399166 4 3110 23.0 8.5 15.8 0.2 3134 chr2L 14396032 intron elB - chr2L 14397599 intron elB - chr2L 14399166 intron elB - chr2L_4_14395001 chr2L_14395001 RAL-642 185 chr2L 14564197 14564227 chr2L 14564273 14564274 10 68 4.5 1.5 3.0 2.5 77 chr2L 14564197 intergenic CG3473 - chr2L 14564236 intergenic not near genes chr2L 14564274 intergenic not near genes chr2L_10_14560001 chr2L_14560001 RAL-642 186 chr2L 14569660 14569689 chr2L 14569749 14569766 5 83 2.0 0.5 1.2 2.3 106 chr2L 14569660 intergenic not near genes chr2L 14569713 intergenic not near genes chr2L 14569766 intergenic not near genes chr2L_5_14565001 chr2L_14565001 RAL-642 187 chr2L 14658922 14658953 chr2L 14659005 14659036 6 82 2.0 4.0 3.0 1.5 114 chr2L 14658922 intron osp - chr2L 14658979 intron osp - chr2L 14659036 intron osp - chr2L_6_14655001 chr2L_14655001 RAL-642 188 chr2L 14694259 14694281 chr2L 14694380 14694405 5 123 1.0 1.0 1.0 2.5 146 chr2L 14694259 intergenic not near genes chr2L 14694332 intergenic not near genes chr2L 14694405 intergenic not near genes chr2L_5_14690001 chr2L_14690001 RAL-642 189 chr2L 14803899 14803913 chr2L 14809101 14809113 copia 5 5199 2.5 5.0 3.8 1.0 5214 chr2L 14803899 intergenic not near genes chr2L 14806506 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-642 190 chr2L 14839750 14839779 chr2L 14839826 14839836 5 72 1.0 2.0 1.5 2.0 86 chr2L 14839750 intergenic not near genes chr2L 14839793 intergenic not near genes chr2L 14839836 intergenic not near genes chr2L_5_14835001 chr2L_14835001 RAL-642 191 chr2L 14840976 14841009 chr2L 14841063 14841096 5 87 0.5 1.0 0.8 2.8 120 chr2L 14840976 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-642 192 chr2L 14856983 14857017 chr2L 14857072 14857106 4 89 2.0 1.0 1.5 1.6 123 chr2L 14856983 intergenic not near genes chr2L 14857044 intergenic not near genes chr2L 14857106 intergenic not near genes chr2L_4_14855001 chr2L_14855001 RAL-642 193 chr2L 14889951 14889988 chr2L 14890376 14890409 jockey 14 425 3.5 4.5 4.0 2.8 458 chr2L 14889951 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890409 intergenic not near genes chr2L_14_14890001 chr2L_14890001 RAL-642 194 chr2L 14974746 14974770 chr2L 14974843 14974867 4 93 2.5 3.0 2.8 1.1 121 chr2L 14974746 5` UTR CR45331 + chr2L 14974806 5` UTR CR45331 + chr2L 14974867 5` UTR CR45331 + chr2L_4_14970001 chr2L_14970001 RAL-642 195 chr2L 15026023 15026050 chr2L 15026104 15026131 8 79 3.0 3.0 3.0 2.0 108 chr2L 15026023 exon GABA-B-R1 + chr2L 15026077 intron GABA-B-R1 + chr2L 15026131 intron GABA-B-R1 + chr2L_8_15025001 chr2L_15025001 RAL-642 196 chr2L 15031555 15031585 chr2L 15031795 15031825 10 238 3.5 1.5 2.5 2.9 270 chr2L 15031555 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031690 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031825 intron GABA-B-R1 + chr2L_10_15030001 chr2L_15030001 RAL-642 197 chr2L 15078068 15078095 chr2L 15078156 15078183 6 86 0.5 2.5 1.5 2.4 115 chr2L 15078068 intron CG15270 + chr2L 15078126 intron CG15270 + chr2L 15078183 intron CG15270 + chr2L_6_15075001 chr2L_15075001 RAL-642 198 chr2L 15161250 15161276 chr2L 15161386 15161412 9 135 3.0 1.5 2.2 2.8 162 chr2L 15161250 intergenic CR44770 + chr2L 15161331 intergenic CR44770 + chr2L 15161412 intergenic CR44770 +,CG4168 - chr2L_9_15160001 chr2L_15160001 RAL-642 199 chr2L 15186828 15186828 chr2L 18826751 18826761 4 3639930 7.0 13.5 10.2 0.4 3639933 chr2L 15186828 intron CG4168 - chr2L 17006794 intergenic not near genes chr2L 18826761 intergenic CG17322 +,CG17323 + chr2L_4_17005001 chr2L_17005001 RAL-642 200 chr2L 15527431 15527457 chr2L 15527509 15527529 4 76 0.0 3.0 1.5 1.6 98 chr2L 15527431 intergenic not near genes chr2L 15527480 intergenic not near genes chr2L 15527529 intergenic not near genes chr2L_4_15525001 chr2L_15525001 RAL-642 201 chr2L 15538486 15538507 chr2L 15538576 15538598 6 91 2.5 2.0 2.2 1.9 112 chr2L 15538486 intergenic not near genes chr2L 15538542 intergenic not near genes chr2L 15538598 intergenic not near genes chr2L_6_15535001 chr2L_15535001 RAL-642 202 chr2L 15544381 15544408 chr2L 15544457 15544460 12 72 4.0 1.0 2.5 3.4 79 chr2L 15544381 intergenic not near genes chr2L 15544420 intergenic not near genes chr2L 15544460 intergenic not near genes chr2L_12_15540001 chr2L_15540001 RAL-642 203 chr2L 15586413 15586440 chr2L 15593465 15593492 297 5 7052 0.5 2.5 1.5 2.0 7079 chr2L 15586413 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-642 204 chr2L 15953196 15953225 chr2L 15953301 15953330 4 105 1.5 2.0 1.8 1.4 134 chr2L 15953196 intron beat-Ib - chr2L 15953263 intron beat-Ib - chr2L 15953330 intron beat-Ib - chr2L_4_15950001 chr2L_15950001 RAL-642 205 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 15.5 23.0 19.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-642 206 chr2L 16210502 16210518 chr2L 16210579 16210597 4 78 0.5 3.0 1.8 1.4 95 chr2L 16210502 intergenic not near genes chr2L 16210550 intergenic not near genes chr2L 16210597 intergenic not near genes chr2L_4_16210001 chr2L_16210001 RAL-642 207 chr2L 9084339 9084340 chr2L 16217660 16217660 5 7133321 16.0 23.0 19.5 0.2 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-642 208 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 15.5 23.0 19.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-642 209 chr2L 16280251 16280287 chr2L 16281419 16281449 1360 16 1166 3.0 8.5 5.8 2.4 1198 chr2L 16280251 intron crp - chr2L 16280850 intron crp - chr2L 16281449 intron crp - chr2L_16_16280001 chr2L_16280001 RAL-642 210 chr2L 16572207 16572237 chr2L 16572299 16572330 4 92 2.0 0.0 1.0 2.0 123 chr2L 16572207 intron CG42389 + chr2L 16572268 intron CG42389 + chr2L 16572330 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-642 211 chr2L 16716952 16716982 chr2L 16717069 16717099 5 116 0.5 5.5 3.0 1.2 147 chr2L 16716952 intron Cyt-c-d + chr2L 16717026 intron Cyt-c-d + chr2L 16717099 intron Cyt-c-d + chr2L_5_16715001 chr2L_16715001 RAL-642 212 chr2L 16958106 16958131 chr2L 16962894 16962918 Doc 4 4788 2.0 2.0 2.0 1.3 4812 chr2L 16958106 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962918 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-642 213 chr2L 17050023 17050048 chr2L 17050101 17050135 6 76 1.0 2.5 1.8 2.1 112 chr2L 17050023 intergenic not near genes chr2L 17050079 intergenic not near genes chr2L 17050135 intergenic not near genes chr2L_6_17050001 chr2L_17050001 RAL-642 214 chr2L 17238831 17238861 chr2L 17238916 17238941 6 84 3.0 1.5 2.2 1.9 110 chr2L 17238831 intron beat-IIIc - chr2L 17238886 intron beat-IIIc - chr2L 17238941 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-642 215 chr2L 17273195 17273226 chr2L 17277976 17278009 F-element 11 4781 4.0 4.0 4.0 2.2 4814 chr2L 17273195 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-642 216 chr2L 17289231 17289261 chr2L 17289310 17289340 9 79 2.0 0.5 1.2 4.1 109 chr2L 17289231 intergenic not near genes chr2L 17289286 intergenic not near genes chr2L 17289340 intergenic not near genes chr2L_9_17285001 chr2L_17285001 RAL-642 217 chr2L 17327919 17327929 chr2L 17327999 17328015 4 84 5.0 4.5 4.8 0.7 96 chr2L 17327919 intergenic not near genes chr2L 17327967 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-642 218 chr2L 17375795 17375802 chr2L 17375909 17375917 4 114 6.0 3.0 4.5 0.7 122 chr2L 17375795 intron Lrch - chr2L 17375856 intron Lrch - chr2L 17375917 intron Lrch - chr2L_4_17375001 chr2L_17375001 RAL-642 219 chr2L 17670924 17670944 chr2L 17672979 17673002 5 2056 13.5 15.0 14.2 0.3 2078 chr2L 17670924 intron CadN - chr2L 17671963 intron CadN - chr2L 17673002 intron CadN - chr2L_5_17670001 chr2L_17670001 RAL-642 220 chr2L 17819927 17819953 chr2L 17825124 17825156 copia 4 5202 0.5 1.0 0.8 2.2 5229 chr2L 17819927 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825156 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-642 221 chr2L 17951943 17951979 chr2L 17953410 17953445 hobo 7 1465 3.0 3.0 3.0 1.8 1502 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-642 222 chr2L 18002106 18002127 chr2L 18002269 18002273 8 160 6.5 1.5 4.0 1.6 167 chr2L 18002106 intergenic not near genes chr2L 18002190 intergenic not near genes chr2L 18002273 intergenic not near genes chr2L_8_18000001 chr2L_18000001 RAL-642 223 chr2L 18051877 18051906 chr2L 18061024 18061053 roo 11 9146 3.5 1.5 2.5 3.1 9176 chr2L 18051877 intron rdo + chr2L 18056465 intron rdo + chr2L 18061053 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-642 224 chr2L 18079831 18079836 chr2L 18079917 18079921 4 86 2.5 3.0 2.8 1.1 90 chr2L 18079831 intron Arr1 + chr2L 18079876 intron Arr1 + chr2L 18079921 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-642 225 chr2L 18235038 18235068 chr2L 18235231 18235254 4 187 2.5 6.5 4.5 0.7 216 chr2L 18235038 intron CG42750 - chr2L 18235146 intron CG42750 - chr2L 18235254 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-642 226 chr2L 18306765 18306796 chr2L 18307122 18307151 6 356 1.5 2.0 1.8 2.1 386 chr2L 18306765 intergenic not near genes chr2L 18306958 intergenic not near genes chr2L 18307151 intergenic not near genes chr2L_6_18305001 chr2L_18305001 RAL-642 227 chr2L 18315249 18315282 chr2L 18315329 18315362 7 79 1.0 3.5 2.2 2.2 113 chr2L 18315249 intergenic not near genes chr2L 18315306 intergenic not near genes chr2L 18315362 intergenic not near genes chr2L_7_18315001 chr2L_18315001 RAL-642 228 chr2L 18394776 18394793 chr2L 18394965 18394971 4 184 2.0 1.5 1.8 1.4 195 chr2L 18394776 intergenic not near genes chr2L 18394874 intergenic not near genes chr2L 18394971 intergenic not near genes chr2L_4_18390001 chr2L_18390001 RAL-642 229 chr2L 18408030 18408053 chr2L 18412814 18412837 Doc 4 4784 2.0 0.0 1.0 2.0 4807 chr2L 18408030 intergenic not near genes chr2L 18410434 intergenic not near genes chr2L 18412837 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-642 230 chr2L 18496690 18496708 chr2L 18496772 18496790 5 82 0.5 0.5 0.5 3.3 100 chr2L 18496690 intron kon - chr2L 18496740 intron kon - chr2L 18496790 intron kon - chr2L_5_18495001 chr2L_18495001 RAL-642 231 chr2L 18558936 18558966 chr2L 18559246 18559276 6 310 0.5 4.0 2.2 1.9 340 chr2L 18558936 intron Pde11 - chr2L 18559106 intron Pde11 - chr2L 18559276 intron Pde11 - chr2L_6_18555001 chr2L_18555001 RAL-642 232 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 20.5 18.5 19.5 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-642 233 chr2L 18729265 18729289 chr2L 18729570 18729594 9 304 2.0 5.5 3.8 1.9 329 chr2L 18729265 intron CG10348 - chr2L 18729430 intron CG10348 - chr2L 18729594 intron CG10348 - chr2L_9_18725001 chr2L_18725001 RAL-642 234 chr2L 18826632 18826661 chr2L 18826767 18826796 5 136 5.5 20.5 13.0 0.4 164 chr2L 18826632 3` UTR CG17323 + chr2L 18826714 3` UTR CG17323 + chr2L 18826796 5` UTR CG17322 + chr2L_5_18825001 chr2L_18825001 RAL-642 235 chr2L 18846436 18846464 chr2L 18846526 18846554 8 90 0.0 1.0 0.5 5.3 118 chr2L 18846436 intron CG17321 + chr2L 18846495 intron CG17321 + chr2L 18846554 intron CG17321 + chr2L_8_18845001 chr2L_18845001 RAL-642 236 chr2L 18883856 18883867 chr2L 18883936 18883949 4 80 5.0 3.5 4.2 0.8 93 chr2L 18883856 intergenic not near genes chr2L 18883902 intergenic not near genes chr2L 18883949 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-642 237 chr2L 18898398 18898426 chr2L 18898479 18898508 10 80 1.5 2.5 2.0 3.3 110 chr2L 18898398 intergenic not near genes chr2L 18898453 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_10_18895001 chr2L_18895001 RAL-642 238 chr2L 18990310 18990336 chr2L 18990421 18990442 5 109 2.5 5.0 3.8 1.0 132 chr2L 18990310 intergenic CG15170 - chr2L 18990376 intergenic CG15170 - chr2L 18990442 intergenic CG15170 - chr2L_5_18990001 chr2L_18990001 RAL-642 239 chr2L 19018301 19018314 chr2L 19018372 19018394 4 78 1.5 4.0 2.8 1.1 93 chr2L 19018301 intergenic not near genes chr2L 19018348 intergenic not near genes chr2L 19018394 intergenic not near genes chr2L_4_19015001 chr2L_19015001 RAL-642 240 chr2L 19026888 19026909 chr2L 19026969 19026990 9 81 1.5 2.0 1.8 3.2 102 chr2L 19026888 intergenic not near genes chr2L 19026939 intergenic not near genes chr2L 19026990 intergenic not near genes chr2L_9_19025001 chr2L_19025001 RAL-642 241 chr2L 19121039 19121067 chr2L 19121117 19121145 7 78 1.0 0.0 0.5 4.7 106 chr2L 19121039 intergenic l(2)37Cc - chr2L 19121092 intergenic l(2)37Cc - chr2L 19121145 intergenic l(2)37Cc - chr2L_7_19120001 chr2L_19120001 RAL-642 242 chr2L 19147372 19147402 chr2L 19154407 19154437 297 4 7035 2.0 2.0 2.0 1.3 7065 chr2L 19147372 intron brat + chr2L 19150904 intron brat + chr2L 19154437 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-642 243 chr2L 19192269 19192298 chr2L 19192373 19192381 5 95 1.5 2.5 2.0 1.7 112 chr2L 19192269 intron drl + chr2L 19192325 intron drl + chr2L 19192381 intron drl + chr2L_5_19190001 chr2L_19190001 RAL-642 244 chr2L 19374492 19374519 chr2L 19374601 19374628 6 109 2.0 0.5 1.2 2.7 136 chr2L 19374492 intergenic not near genes chr2L 19374560 intergenic not near genes chr2L 19374628 intergenic not near genes chr2L_6_19370001 chr2L_19370001 RAL-642 245 chr2L 19407719 19407736 chr2L 19407916 19407933 5 197 4.0 3.5 3.8 1.0 214 chr2L 19407719 intron Pax - chr2L 19407826 intron Pax - chr2L 19407933 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-642 246 chr2L 19441398 19441431 chr2L 19446355 19446381 8 4948 28.5 33.0 30.8 0.3 4983 chr2L 19441398 intron CG10237 - chr2L 19443890 intron,intron RanGAP +,Hs2st - chr2L 19446381 exon RanGAP + chr2L_8_19440001 chr2L_19440001 RAL-642 247 chr2L 19620107 19620130 chr2L 19621079 19621114 jockey 7 986 4.0 4.5 4.2 1.3 1007 chr2L 19620107 intron Lar + chr2L 19620610 intron Lar + chr2L 19621114 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-642 248 chr2L 19638532 19638572 chr2L 19638620 19638660 8 87 2.5 1.0 1.8 2.9 128 chr2L 19638532 intron Lar + chr2L 19638596 intron Lar + chr2L 19638660 intron Lar + chr2L_8_19635001 chr2L_19635001 RAL-642 249 chr2L 19652569 19652601 chr2L 19674005 19674037 opus 10 21434 3.0 4.0 3.5 2.2 21468 chr2L 19652569 intron Lar + chr2L 19663303 intron Lar + chr2L 19674037 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-642 250 chr2L 19703538 19703570 chr2L 19712672 19712676 roo 6 9130 3.0 2.5 2.8 1.6 9138 chr2L 19703538 intron Lar + chr2L 19708107 intron Lar + chr2L 19712676 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-642 251 chr2L 19721083 19721115 chr2L 19721398 19721430 5 315 1.0 1.0 1.0 2.5 347 chr2L 19721083 intron Lar + chr2L 19721256 intron Lar + chr2L 19721430 intron Lar + chr2L_5_19720001 chr2L_19720001 RAL-642 252 chr2L 19794025 19794047 chr2L 19794101 19794131 4 82 1.0 3.0 2.0 1.3 106 chr2L 19794025 intron fs(2)ltoPP43 - chr2L 19794078 intron fs(2)ltoPP43 - chr2L 19794131 intron fs(2)ltoPP43 - chr2L_4_19790001 chr2L_19790001 RAL-642 253 chr2L 19803907 19803919 chr2L 19804613 19804625 4 705 0.5 1.5 1.0 2.0 718 chr2L 19803907 intron sick + chr2L 19804266 intron sick + chr2L 19804625 intron sick + chr2L_4_19800001 chr2L_19800001 RAL-642 254 chr2L 19864880 19864907 chr2L 19865139 19865167 5 260 2.0 1.5 1.8 1.8 287 chr2L 19864880 intron sick + chr2L 19865024 intron sick + chr2L 19865167 intron sick + chr2L_5_19865001 chr2L_19865001 RAL-642 255 chr2L 19884973 19884985 chr2L 19885051 19885063 6 78 2.5 0.0 1.2 2.7 90 chr2L 19884973 intron sick + chr2L 19885018 intron sick + chr2L 19885063 intron sick + chr2L_6_19885001 chr2L_19885001 RAL-642 256 chr2L 19888293 19888324 chr2L 19888373 19888404 6 80 2.5 2.0 2.2 1.9 111 chr2L 19888293 intron sick + chr2L 19888348 intron sick + chr2L 19888404 intron sick + chr2L_6_19885001 chr2L_19885001 RAL-642 257 chr2L 19972929 19972963 chr2L 19973017 19973051 12 85 4.0 2.0 3.0 3.0 122 chr2L 19972929 intron CG43861 - chr2L 19972990 intron CG43861 - chr2L 19973051 intron CG43861 - chr2L_12_19970001 chr2L_19970001 RAL-642 258 chr2L 20036537 20036545 chr2L 20036620 20036629 4 84 3.5 1.0 2.2 1.2 92 chr2L 20036537 intron sNPF + chr2L 20036583 intron sNPF + chr2L 20036629 intron sNPF + chr2L_4_20035001 chr2L_20035001 RAL-642 259 chr2L 20041430 20041463 chr2L 20041514 20041548 9 83 2.0 1.0 1.5 3.6 118 chr2L 20041430 intron sNPF + chr2L 20041489 intron sNPF + chr2L 20041548 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-642 260 chr2L 20079514 20079540 chr2L 20079635 20079661 6 119 2.5 1.0 1.8 2.1 147 chr2L 20079514 intron,intron neb +,fok - chr2L 20079588 intron,intron neb +,fok - chr2L 20079661 intron,intron neb +,fok - chr2L_6_20075001 chr2L_20075001 RAL-642 261 chr2L 20296526 20296541 chr2L 20296606 20296622 5 81 2.5 5.0 3.8 1.0 96 chr2L 20296526 intergenic CR43414 - chr2L 20296574 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-642 262 chr2L 20299414 20299426 chr2L 20299537 20299548 6 123 0.5 4.5 2.5 1.7 134 chr2L 20299414 intergenic not near genes chr2L 20299481 intergenic not near genes chr2L 20299548 intergenic not near genes chr2L_6_20295001 chr2L_20295001 RAL-642 263 chr2L 20310880 20310919 chr2L 20310960 20310996 6 79 0.0 0.0 0.0 6.0 116 chr2L 20310880 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310996 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-642 264 chr2L 20526237 20526254 chr2L 20526481 20526498 4 243 1.0 1.5 1.2 1.8 261 chr2L 20526237 intergenic not near genes chr2L 20526368 intergenic not near genes chr2L 20526498 intergenic not near genes chr2L_4_20525001 chr2L_20525001 RAL-642 265 chr2L 20568663 20568683 chr2L 20569053 20569070 X-element 5 389 2.0 2.5 2.2 1.6 407 chr2L 20568663 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-642 266 chr2L 20576226 20576248 chr2L 20583694 20583712 blood 5 7467 3.0 1.5 2.2 1.6 7486 chr2L 20576226 intergenic not near genes chr2L 20579969 intergenic not near genes chr2L 20583712 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-642 267 chr2L 20602726 20602747 chr2L 20602814 20602835 4 88 0.0 1.0 0.5 2.7 109 chr2L 20602726 intron CR44909 - chr2L 20602780 intron CR44909 - chr2L 20602835 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-642 268 chr2L 20607661 20607671 chr2L 20607715 20607724 5 68 3.5 3.0 3.2 1.2 63 chr2L 20607661 intron,3` UTR CR44909 -,CR43608 - chr2L 20607692 intron,3` UTR CR44909 -,CR43608 - chr2L 20607724 intron,3` UTR CR44909 -,CR43608 - chr2L_5_20605001 chr2L_20605001 RAL-642 269 chr2L 20668716 20668722 chr2L 20668792 20668798 4 76 2.0 5.0 3.5 0.9 82 chr2L 20668716 intron CG31678 - chr2L 20668757 intron CG31678 - chr2L 20668798 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-642 270 chr2L 20818251 20818282 chr2L 20818678 20818709 9 427 2.0 1.5 1.8 3.2 458 chr2L 20818251 intron CheB38a - chr2L 20818480 exon CheB38a - chr2L 20818709 intergenic CheB38a - chr2L_9_20815001 chr2L_20815001 RAL-642 271 chr2L 20819112 20819127 chr2L 20819196 20819211 4 83 3.5 1.0 2.2 1.2 99 chr2L 20819112 intergenic not near genes chr2L 20819162 intergenic not near genes chr2L 20819211 intergenic not near genes chr2L_4_20815001 chr2L_20815001 RAL-642 272 chr2L 20840025 20840051 chr2L 20840236 20840263 7 211 2.5 2.0 2.2 2.2 238 chr2L 20840025 intergenic not near genes chr2L 20840144 intergenic not near genes chr2L 20840263 intergenic CG31676 + chr2L_7_20840001 chr2L_20840001 RAL-642 273 chr2L 20901480 20901489 chr2L 20902634 20902643 1360 4 1156 0.0 2.0 1.0 2.0 1163 chr2L 20901480 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902643 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-642 274 chr2L 20935927 20935944 chr2L 20937035 20937051 6 1109 10.5 32.5 21.5 0.3 1124 chr2L 20935927 intergenic not near genes chr2L 20936489 intergenic not near genes chr2L 20937051 intergenic not near genes chr2L_6_20935001 chr2L_20935001 RAL-642 275 chr2L 20976640 20976667 chr2L 20981455 20981481 X-element 5 4815 3.0 2.0 2.5 1.4 4841 chr2L 20976640 intron CG42238 - chr2L 20979060 intron CG42238 - chr2L 20981481 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-642 276 chr2L 20987458 20987486 chr2L 20987631 20987659 6 173 2.0 1.5 1.8 2.1 201 chr2L 20987458 intron CG42238 - chr2L 20987558 intron CG42238 - chr2L 20987659 intron CG42238 - chr2L_6_20985001 chr2L_20985001 RAL-642 277 chr2L 20991041 20991060 chr2L 20991117 20991138 5 78 4.5 1.5 3.0 1.2 97 chr2L 20991041 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991138 intron CG42238 - chr2L_5_20990001 chr2L_20990001 RAL-642 278 chr2L 21001519 21001548 chr2L 21001604 21001627 5 81 5.0 2.0 3.5 1.1 108 chr2L 21001519 intron CG42238 - chr2L 21001573 intron CG42238 - chr2L 21001627 intron CG42238 - chr2L_5_21000001 chr2L_21000001 RAL-642 279 chr2L 21020288 21020309 chr2L 21023961 21023986 NOF 9 3674 1.5 5.5 3.5 2.0 3698 chr2L 21020288 intron CG42238 - chr2L 21022137 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-642 280 chr2L 21041140 21041160 chr2L 21049401 21049417 Tirant 6 8260 2.5 4.0 3.2 1.4 8277 chr2L 21041140 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049417 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-642 281 chr2L 21199229 21199260 chr2L 21199305 21199337 7 73 1.5 5.0 3.2 1.7 108 chr2L 21199229 intergenic CG31624 -,Ret - chr2L 21199283 3` UTR CG31624 - chr2L 21199337 3` UTR CG31624 - chr2L_7_21195001 chr2L_21195001 RAL-642 282 chr2L 21218978 21218989 chr2L 21219252 21219263 5 274 3.0 1.5 2.2 1.6 285 chr2L 21218978 intron Atg18b - chr2L 21219120 intron Atg18b - chr2L 21219263 intron Atg18b - chr2L_5_21215001 chr2L_21215001 RAL-642 283 chr2L 21246511 21246526 chr2L 21246605 21246620 5 93 6.5 2.0 4.2 1.0 109 chr2L 21246511 intron Hr39 + chr2L 21246566 intron Hr39 + chr2L 21246620 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-642 284 chr2L 21246530 21246539 chr2L 21246603 21246603 4 75 3.0 1.5 2.2 1.2 73 chr2L 21246530 intron Hr39 + chr2L 21246566 intron Hr39 + chr2L 21246603 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-642 285 chr2L 21274258 21274283 chr2L 21274350 21274353 4 83 1.5 2.5 2.0 1.3 95 chr2L 21274258 exon CG8671 + chr2L 21274306 exon CG8671 + chr2L 21274353 exon CG8671 + chr2L_4_21270001 chr2L_21270001 RAL-642 286 chr2L 21836393 21836422 chr2L 21836482 21836512 4 90 2.0 3.0 2.5 1.1 119 chr2L 21836393 3` UTR tsh + chr2L 21836452 3` UTR tsh + chr2L 21836512 3` UTR tsh + chr2L_4_21835001 chr2L_21835001 RAL-642 287 chr2L 21963775 21963808 chr2L 21963853 21963886 5 78 2.0 2.0 2.0 1.7 111 chr2L 21963775 intergenic not near genes chr2L 21963830 intergenic not near genes chr2L 21963886 intergenic not near genes chr2L_5_21960001 chr2L_21960001 RAL-642 288 chr2L 21981686 21981714 chr2L 21990850 21990879 roo 7 9164 3.0 4.5 3.8 1.5 9193 chr2L 21981686 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_7_21985001 chr2L_21985001 RAL-642 289 chr2L 22179540 22179573 chr2L 22179617 22179650 13 75 1.5 5.0 3.2 3.1 110 chr2L 22179540 intron CG3635 + chr2L 22179595 intron CG3635 + chr2L 22179650 intron CG3635 + chr2L_13_22175001 chr2L_22175001 RAL-642 290 chr2L 22343815 22343834 chr2L 22344256 22344275 4 441 2.0 2.5 2.2 1.2 460 chr2L 22343815 intron CG17018 + chr2L 22344045 intron CG17018 + chr2L 22344275 intron CG17018 + chr2L_4_22340001 chr2L_22340001 RAL-642 291 chr2R 529349 529356 chr2R 537965 537976 Max-element 4 8621 0.5 2.0 1.2 1.8 8627 chr2R 529349 intron CG40378 + chr2R 533662 intron CG40378 + chr2R 537976 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-642 292 chr2R 552778 552788 chr2R 553975 553997 1360 4 1210 1.0 3.0 2.0 1.3 1219 chr2R 552778 intron CG40378 + chr2R 553388 intron CG40378 + chr2R 553997 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-642 293 chr2R 1082366 1082384 chr2R 1087129 1087160 Doc 6 4773 4.5 4.5 4.5 1.1 4794 chr2R 1082366 intron rl + chr2R 1084763 intron rl + chr2R 1087160 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-642 294 chr2R 2498990 2499018 chr2R 2508136 2508163 roo 4 9146 3.5 0.5 2.0 1.3 9173 chr2R 2498990 intron MFS17 - chr2R 2503576 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-642 295 chr2R 3291928 3291958 chr2R 3915097 3915127 5 623166 4.5 11.5 8.0 0.6 623199 chr2R 3291928 intergenic not near genes chr2R 3603528 intergenic not near genes chr2R 3915127 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-642 296 chr2R 4604551 4604573 chr2R 4604629 4604652 6 77 2.0 3.0 2.5 1.7 101 chr2R 4604551 intron p120ctn + chr2R 4604602 intron p120ctn + chr2R 4604652 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-642 297 chr2R 4624642 4624672 chr2R 4626547 4626577 Bica 8 1905 5.0 1.5 3.2 1.9 1935 chr2R 4624642 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626577 intergenic not near genes chr2R_8_4625001 chr2R_4625001 RAL-642 298 chr2R 4634163 4634177 chr2R 4634240 4634256 5 75 1.5 5.5 3.5 1.1 93 chr2R 4634163 intergenic not near genes chr2R 4634210 intergenic not near genes chr2R 4634256 intergenic not near genes chr2R_5_4630001 chr2R_4630001 RAL-642 299 chr2R 4688105 4688125 chr2R 4688198 4688216 5 93 3.0 3.0 3.0 1.2 111 chr2R 4688105 intergenic not near genes chr2R 4688160 intergenic not near genes chr2R 4688216 intergenic not near genes chr2R_5_4685001 chr2R_4685001 RAL-642 300 chr2R 4704818 4704847 chr2R 4705133 4705151 8 311 3.5 1.5 2.5 2.3 333 chr2R 4704818 intron Nipped-B - chr2R 4704984 intron Nipped-B - chr2R 4705151 intron Nipped-B - chr2R_8_4700001 chr2R_4700001 RAL-642 301 chr2R 4746243 4746259 chr2R 4746851 4746881 6 616 2.0 1.5 1.8 2.1 638 chr2R 4746243 intron conu + chr2R 4746562 intron conu + chr2R 4746881 intron conu + chr2R_6_4745001 chr2R_4745001 RAL-642 302 chr2R 4838878 4838893 chr2R 4840401 4840410 transib2 9 1522 1.5 4.5 3.0 2.2 1532 chr2R 4838878 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840410 intergenic not near genes chr2R_9_4835001 chr2R_4835001 RAL-642 303 chr2R 4888602 4888622 chr2R 4888688 4888709 4 86 2.0 0.0 1.0 2.0 107 chr2R 4888602 intergenic not near genes chr2R 4888656 intergenic not near genes chr2R 4888709 intergenic not near genes chr2R_4_4885001 chr2R_4885001 RAL-642 304 chr2R 4933367 4933390 chr2R 4933920 4933954 10 556 4.0 3.5 3.8 2.1 587 chr2R 4933367 intron Ir41a + chr2R 4933660 intron Ir41a + chr2R 4933954 intron Ir41a + chr2R_10_4930001 chr2R_4930001 RAL-642 305 chr2R 5008999 5009026 chr2R 5009308 5009322 4 301 3.5 3.0 3.2 1.0 323 chr2R 5008999 intron Ir41a + chr2R 5009160 intron Ir41a + chr2R 5009322 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-642 306 chr2R 5237358 5237367 chr2R 5237440 5237448 4 81 2.5 0.0 1.2 1.8 90 chr2R 5237358 intron Nipped-A - chr2R 5237403 intron Nipped-A - chr2R 5237448 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-642 307 chr2R 5303490 5303512 chr2R 5303578 5303592 5 86 3.5 1.5 2.5 1.4 102 chr2R 5303490 intergenic not near genes chr2R 5303541 intergenic not near genes chr2R 5303592 intergenic not near genes chr2R_5_5300001 chr2R_5300001 RAL-642 308 chr2R 5581398 5581424 chr2R 5627605 5627633 9 46208 0.5 5.5 3.0 2.2 46235 chr2R 5581398 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627633 intergenic not near genes chr2R_9_5600001 chr2R_5600001 RAL-642 309 chr2R 5621027 5621051 chr2R 5621163 5621168 10 135 3.5 5.0 4.2 1.9 141 chr2R 5621027 intergenic not near genes chr2R 5621098 intergenic not near genes chr2R 5621168 intergenic not near genes chr2R_10_5620001 chr2R_5620001 RAL-642 310 chr2R 5640035 5640046 chr2R 5640092 5640122 6 69 1.0 4.0 2.5 1.7 87 chr2R 5640035 intergenic not near genes chr2R 5640078 intergenic not near genes chr2R 5640122 intergenic not near genes chr2R_6_5640001 chr2R_5640001 RAL-642 311 chr2R 5640474 5640499 chr2R 5640566 5640591 4 90 3.5 3.0 3.2 1.0 117 chr2R 5640474 intergenic CG11665 - chr2R 5640532 intergenic CG11665 - chr2R 5640591 intergenic CG11665 - chr2R_4_5640001 chr2R_5640001 RAL-642 312 chr2R 5655418 5655448 chr2R 5655498 5655528 9 80 2.0 6.0 4.0 1.8 110 chr2R 5655418 exon CG1344 + chr2R 5655473 exon CG1344 + chr2R 5655528 exon CG1344 + chr2R_9_5655001 chr2R_5655001 RAL-642 313 chr2R 5655880 5655895 chr2R 5655968 5655983 4 88 3.0 1.5 2.2 1.2 103 chr2R 5655880 3` UTR CG1344 + chr2R 5655932 3` UTR CG1344 + chr2R 5655983 3` UTR CG1344 + chr2R_4_5655001 chr2R_5655001 RAL-642 314 chr2R 5772539 5772548 chr2R 5772598 5772603 4 66 2.0 3.0 2.5 1.1 64 chr2R 5772539 3` UTR Gp210 + chr2R 5772571 3` UTR Gp210 + chr2R 5772603 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-642 315 chr2R 5807847 5807875 chr2R 5808034 5808062 11 186 4.0 4.5 4.2 2.1 215 chr2R 5807847 intron dpr12 + chr2R 5807954 intron dpr12 + chr2R 5808062 intron dpr12 + chr2R_11_5805001 chr2R_5805001 RAL-642 316 chr2R 5869284 5869307 chr2R 5874358 5874376 flea 6 5073 1.5 1.0 1.2 2.7 5092 chr2R 5869284 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874376 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-642 317 chr2R 5876867 5876893 chr2R 5876968 5876994 5 101 2.5 4.0 3.2 1.2 127 chr2R 5876867 intergenic not near genes chr2R 5876930 intergenic not near genes chr2R 5876994 intergenic not near genes chr2R_5_5875001 chr2R_5875001 RAL-642 318 chr2R 5945801 5945829 chr2R 5945890 5945922 4 92 1.5 0.0 0.8 2.2 121 chr2R 5945801 intergenic not near genes chr2R 5945862 intergenic not near genes chr2R 5945922 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-642 319 chr2R 6053268 6053293 chr2R 6053530 6053536 8 259 0.5 0.0 0.2 6.7 268 chr2R 6053268 intron CCHa2-R + chr2R 6053402 intron CCHa2-R + chr2R 6053536 intron CCHa2-R + chr2R_8_6050001 chr2R_6050001 RAL-642 320 chr2R 6065721 6065751 chr2R 6065863 6065888 9 144 2.5 1.0 1.8 3.2 167 chr2R 6065721 intron CCHa2-R + chr2R 6065804 intron CCHa2-R + chr2R 6065888 exon CCHa2-R + chr2R_9_6065001 chr2R_6065001 RAL-642 321 chr2R 6096725 6096750 chr2R 6101917 6101918 BS 10 5191 3.5 6.5 5.0 1.7 5193 chr2R 6096725 intron EcR - chr2R 6099322 intron EcR - chr2R 6101918 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-642 322 chr2R 6197543 6197569 chr2R 6197627 6197654 9 86 1.0 3.0 2.0 3.0 111 chr2R 6197543 3` UTR CG30432 - chr2R 6197598 3` UTR CG30432 - chr2R 6197654 3` UTR CG30432 - chr2R_9_6195001 chr2R_6195001 RAL-642 323 chr2R 6539830 6539850 chr2R 6539946 6539973 4 121 0.5 3.5 2.0 1.3 143 chr2R 6539830 intron jing + chr2R 6539902 intron jing + chr2R 6539973 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-642 324 chr2R 6541251 6541277 chr2R 6541354 6541361 7 97 1.5 1.0 1.2 3.2 110 chr2R 6541251 intron jing + chr2R 6541306 intron jing + chr2R 6541361 intron jing + chr2R_7_6540001 chr2R_6540001 RAL-642 325 chr2R 6738847 6738869 chr2R 6738929 6738951 8 78 3.5 3.0 3.2 1.9 104 chr2R 6738847 intron l(2)01289 - chr2R 6738899 intron l(2)01289 - chr2R 6738951 intron l(2)01289 - chr2R_8_6735001 chr2R_6735001 RAL-642 326 chr2R 6860296 6860321 chr2R 6860368 6860392 4 71 3.0 5.0 4.0 0.8 96 chr2R 6860296 intergenic not near genes chr2R 6860344 intergenic not near genes chr2R 6860392 intergenic not near genes chr2R_4_6860001 chr2R_6860001 RAL-642 327 chr2R 6897459 6897497 chr2R 6897548 6897587 12 89 4.0 2.0 3.0 3.0 128 chr2R 6897459 intron CG30158 + chr2R 6897523 intron CG30158 + chr2R 6897587 intron CG30158 + chr2R_12_6895001 chr2R_6895001 RAL-642 328 chr2R 7025903 7025926 chr2R 7025991 7026001 7 86 2.5 5.0 3.8 1.5 98 chr2R 7025903 intron Tsp42Ef + chr2R 7025952 intron Tsp42Ef + chr2R 7026001 intron Tsp42Ef + chr2R_7_7025001 chr2R_7025001 RAL-642 329 chr2R 7139946 7139951 chr2R 7141436 7141443 hopper2 4 1492 4.5 10.5 7.5 0.5 1497 chr2R 7139946 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141443 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-642 330 chr2R 7175499 7175521 chr2R 7175574 7175600 6 76 2.0 0.5 1.2 2.7 101 chr2R 7175499 intron pk + chr2R 7175550 intron pk + chr2R 7175600 intron pk + chr2R_6_7175001 chr2R_7175001 RAL-642 331 chr2R 7226658 7226667 chr2R 7226751 7226762 5 93 1.0 6.5 3.8 1.0 104 chr2R 7226658 intergenic not near genes chr2R 7226710 intergenic not near genes chr2R 7226762 intergenic not near genes chr2R_5_7225001 chr2R_7225001 RAL-642 332 chr2R 7235820 7235848 chr2R 7240911 7240930 jockey 9 5089 6.5 3.5 5.0 1.5 5110 chr2R 7235820 intergenic not near genes chr2R 7238375 intergenic not near genes chr2R 7240930 intergenic not near genes chr2R_9_7235001 chr2R_7235001 RAL-642 333 chr2R 7310767 7310795 chr2R 7310849 7310873 5 78 4.5 2.5 3.5 1.1 106 chr2R 7310767 intergenic not near genes chr2R 7310820 intergenic not near genes chr2R 7310873 intergenic not near genes chr2R_5_7310001 chr2R_7310001 RAL-642 334 chr2R 7359851 7359863 chr2R 7360109 7360122 5 259 8.5 3.5 6.0 0.7 271 chr2R 7359851 intron Dscam1 - chr2R 7359986 intron Dscam1 - chr2R 7360122 intron Dscam1 - chr2R_5_7355001 chr2R_7355001 RAL-642 335 chr2R 7417909 7418159 chr2R 7417995 7418238 6 79 1.5 2.0 1.8 2.1 329 chr2R 7417909 intergenic not near genes chr2R 7418074 intergenic not near genes chr2R 7418238 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-642 336 chr2R 7869188 7869211 chr2R 7873974 7873997 Doc 7 4785 2.5 2.5 2.5 2.0 4809 chr2R 7869188 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873997 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-642 337 chr2R 7897138 7897155 chr2R 7897221 7897243 5 83 0.0 6.5 3.2 1.2 105 chr2R 7897138 intron CG30377 + chr2R 7897190 intron CG30377 + chr2R 7897243 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-642 338 chr2R 7954097 7954103 chr2R 7959641 7959648 5 5544 26.5 26.5 26.5 0.2 5551 chr2R 7954097 5` UTR CG14764 - chr2R 7956872 intron CG2906 + chr2R 7959648 exon CG2915 - chr2R_5_7955001 chr2R_7955001 RAL-642 339 chr2R 7954088 7954118 chr2R 7959655 7959662 4 5555 27.0 25.0 26.0 0.1 5574 chr2R 7954088 5` UTR CG14764 - chr2R 7956875 intron CG2906 + chr2R 7959662 exon CG2915 - chr2R_4_7955001 chr2R_7955001 RAL-642 340 chr2R 7983319 7983343 chr2R 7983395 7983417 12 75 2.0 5.5 3.8 2.5 98 chr2R 7983319 intron ACC - chr2R 7983368 intron ACC - chr2R 7983417 intron ACC - chr2R_12_7980001 chr2R_7980001 RAL-642 341 chr2R 8105941 8105966 chr2R 8106032 8106047 16 88 1.5 4.0 2.8 4.2 106 chr2R 8105941 intron Cul4 - chr2R 8105994 intron Cul4 - chr2R 8106047 5` UTR Cul4 - chr2R_16_8105001 chr2R_8105001 RAL-642 342 chr2R 8203746 8203764 chr2R 8203836 8203856 4 92 2.0 1.0 1.5 1.6 110 chr2R 8203746 intron LRP1 + chr2R 8203801 intron LRP1 + chr2R 8203856 intron LRP1 + chr2R_4_8200001 chr2R_8200001 RAL-642 343 chr2R 8330864 8330884 chr2R 8331350 8331370 roo 4 486 5.0 3.0 4.0 0.8 506 chr2R 8330864 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331370 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-642 344 chr2R 8398221 8398240 chr2R 8402987 8403021 Doc 5 4769 3.5 1.5 2.5 1.4 4800 chr2R 8398221 intron CG2121 - chr2R 8400621 intron CG2121 - chr2R 8403021 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-642 345 chr2R 8722768 8722793 chr2R 8723009 8723034 pogo 6 240 2.5 2.5 2.5 1.7 266 chr2R 8722768 intron CG14767 - chr2R 8722901 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-642 346 chr2R 8960463 8960481 chr2R 8960611 8960632 5 151 4.5 3.0 3.8 1.0 169 chr2R 8960463 3` UTR babo + chr2R 8960548 3` UTR babo + chr2R 8960632 3` UTR babo + chr2R_5_8960001 chr2R_8960001 RAL-642 347 chr2R 8995939 8995964 chr2R 8996026 8996038 6 84 0.5 3.0 1.8 2.1 99 chr2R 8995939 exon Np - chr2R 8995988 intron Np - chr2R 8996038 intron Np - chr2R_6_8995001 chr2R_8995001 RAL-642 348 chr2R 9003153 9003168 chr2R 9003232 9003248 4 79 2.0 1.5 1.8 1.4 95 chr2R 9003153 intron Np - chr2R 9003200 intron Np - chr2R 9003248 intron Np - chr2R_4_9000001 chr2R_9000001 RAL-642 349 chr2R 9055796 9055825 chr2R 9055870 9055905 9 77 2.5 2.0 2.2 2.8 109 chr2R 9055796 intron CG13743 - chr2R 9055850 intron CG13743 - chr2R 9055905 intron CG13743 - chr2R_9_9055001 chr2R_9055001 RAL-642 350 chr2R 9151309 9151317 chr2R 9157776 9157787 Burdock 5 6469 5.5 0.5 3.0 1.2 6478 chr2R 9151309 3` UTR CG30345 + chr2R 9154548 intergenic not near genes chr2R 9157787 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-642 351 chr2R 9212716 9212726 chr2R 9213178 9213202 roo 7 469 4.5 6.0 5.2 1.1 486 chr2R 9212716 intergenic CR45309 + chr2R 9212959 intergenic CR45309 + chr2R 9213202 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-642 352 chr2R 9216995 9217029 chr2R 9217071 9217105 11 75 2.0 1.0 1.5 4.4 110 chr2R 9216995 intergenic not near genes chr2R 9217050 intergenic not near genes chr2R 9217105 intergenic not near genes chr2R_11_9215001 chr2R_9215001 RAL-642 353 chr2R 9368126 9368139 chr2R 9368201 9368209 7 74 5.0 1.0 3.0 1.8 83 chr2R 9368126 intron CG13954 - chr2R 9368168 intron CG13954 - chr2R 9368209 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-642 354 chr2R 9378124 9378142 chr2R 9378197 9378224 6 77 2.0 2.5 2.2 1.9 100 chr2R 9378124 intron CG13954 - chr2R 9378174 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_6_9375001 chr2R_9375001 RAL-642 355 chr2R 9510668 9510696 chr2R 9510784 9510812 6 116 2.0 3.0 2.5 1.7 144 chr2R 9510668 intron brp + chr2R 9510740 intron brp + chr2R 9510812 intron brp + chr2R_6_9510001 chr2R_9510001 RAL-642 356 chr2R 9817432 9817451 chr2R 9817511 9817530 6 78 3.5 5.0 4.2 1.2 98 chr2R 9817432 intron,exon CG1648 -,lectin-46Ca + chr2R 9817481 intron,intron CG1648 -,lectin-46Ca + chr2R 9817530 intron,intron CG1648 -,lectin-46Ca + chr2R_6_9815001 chr2R_9815001 RAL-642 357 chr2R 9923861 9923887 chr2R 9923943 9923950 4 77 4.0 4.0 4.0 0.8 89 chr2R 9923861 intron Mef2 - chr2R 9923906 intron Mef2 - chr2R 9923950 intron Mef2 - chr2R_4_9920001 chr2R_9920001 RAL-642 358 chr2R 9945440 9945474 chr2R 9945625 9945644 BS 5 188 3.0 1.0 2.0 1.7 204 chr2R 9945440 intron Mef2 - chr2R 9945542 intron Mef2 - chr2R 9945644 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-642 359 chr2R 10005847 10005882 chr2R 10007012 10007038 1360 14 1160 5.5 2.5 4.0 2.8 1191 chr2R 10005847 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007038 intron Pka-R2 - chr2R_14_10005001 chr2R_10005001 RAL-642 360 chr2R 10086919 10086928 chr2R 10087016 10087024 4 95 4.5 1.0 2.8 1.1 105 chr2R 10086919 intron,exon CG2269 +,sut4 - chr2R 10086972 intron,5` UTR CG2269 +,sut4 - chr2R 10087024 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-642 361 chr2R 10176885 10176908 chr2R 10186044 10186075 roo 4 9164 1.0 0.0 0.5 2.7 9190 chr2R 10176885 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186075 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-642 362 chr2R 10216192 10216209 chr2R 10216270 10216287 4 78 2.5 2.5 2.5 1.1 95 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216240 intron,intron CG12912 -,Hr46 - chr2R 10216287 intron,intron CG12912 -,Hr46 - chr2R_4_10215001 chr2R_10215001 RAL-642 363 chr2R 10225733 10225749 chr2R 10225814 10225831 7 81 2.5 1.5 2.0 2.3 98 chr2R 10225733 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225831 intron,intron CG12912 -,Hr46 - chr2R_7_10225001 chr2R_10225001 RAL-642 364 chr2R 10350903 10350941 chr2R 10350986 10351005 8 78 2.5 2.0 2.2 2.5 102 chr2R 10350903 intron CG42732 - chr2R 10350954 intron CG42732 - chr2R 10351005 intron CG42732 - chr2R_8_10350001 chr2R_10350001 RAL-642 365 chr2R 10352682 10352695 chr2R 10352759 10352771 4 76 3.0 4.5 3.8 0.8 89 chr2R 10352682 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352771 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-642 366 chr2R 10411819 10411837 chr2R 10411901 10411919 5 82 0.0 4.0 2.0 1.7 100 chr2R 10411819 intron CG42732 - chr2R 10411869 intron CG42732 - chr2R 10411919 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-642 367 chr2R 10469027 10469055 chr2R 10469153 10469181 10 125 1.0 5.5 3.2 2.4 154 chr2R 10469027 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-642 368 chr2R 10585574 10585591 chr2R 10594152 10594163 Tirant 5 8579 3.5 2.5 3.0 1.2 8589 chr2R 10585574 intron psq + chr2R 10589868 intron psq + chr2R 10594163 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-642 369 chr2R 10658079 10658084 chr2R 10658149 10658176 5 88 2.5 1.0 1.8 1.8 97 chr2R 10658079 intergenic not near genes chr2R 10658128 intergenic not near genes chr2R 10658176 intergenic not near genes chr2R_5_10655001 chr2R_10655001 RAL-642 370 chr2R 10700485 10700497 chr2R 10700600 10700612 4 114 8.0 2.5 5.2 0.6 127 chr2R 10700485 intron stan + chr2R 10700548 intron stan + chr2R 10700612 intron stan + chr2R_4_10700001 chr2R_10700001 RAL-642 371 chr2R 10947092 10947101 chr2R 10947179 10947188 4 86 4.0 0.0 2.0 1.3 96 chr2R 10947092 5` UTR CR45228 + chr2R 10947140 intergenic CR45228 + chr2R 10947188 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-642 372 chr2R 10992945 10992973 chr2R 10993031 10993059 7 83 6.0 2.5 4.2 1.3 114 chr2R 10992945 intron luna - chr2R 10993002 intron luna - chr2R 10993059 intron luna - chr2R_7_10990001 chr2R_10990001 RAL-642 373 chr2R 11009816 11009836 chr2R 11018990 11019010 roo 6 9171 2.0 2.5 2.2 1.9 9194 chr2R 11009816 intron luna - chr2R 11014413 intron luna - chr2R 11019010 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-642 374 chr2R 11019887 11019909 chr2R 11024939 11024968 jockey 4 5052 4.0 2.0 3.0 1.0 5081 chr2R 11019887 intron luna - chr2R 11022428 intron luna - chr2R 11024968 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-642 375 chr2R 11133402 11133427 chr2R 11133625 11133626 5 218 4.5 0.0 2.2 1.6 224 chr2R 11133402 intergenic not near genes chr2R 11133514 intergenic not near genes chr2R 11133626 intergenic not near genes chr2R_5_11130001 chr2R_11130001 RAL-642 376 chr2R 11207813 11207846 chr2R 11208005 11208014 BS 12 186 5.5 0.5 3.0 3.0 201 chr2R 11207813 intron shn + chr2R 11207914 intron shn + chr2R 11208014 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-642 377 chr2R 11419866 11419893 chr2R 11419996 11420023 7 130 3.5 2.0 2.8 1.8 157 chr2R 11419866 intron Drip - chr2R 11419944 intron Drip - chr2R 11420023 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-642 378 chr2R 11449434 11449463 chr2R 11449511 11449539 7 76 2.0 2.5 2.2 2.2 105 chr2R 11449434 3` UTR qvr + chr2R 11449486 3` UTR qvr + chr2R 11449539 3` UTR qvr + chr2R_7_11445001 chr2R_11445001 RAL-642 379 chr2R 11472648 11472674 chr2R 11473844 11473871 pogo 7 1197 2.5 1.5 2.0 2.3 1223 chr2R 11472648 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-642 380 chr2R 11636412 11636441 chr2R 11636487 11636504 5 68 1.0 2.5 1.8 1.8 92 chr2R 11636412 intron CG9005 - chr2R 11636458 intron CG9005 - chr2R 11636504 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-642 381 chr2R 12043953 12043983 chr2R 12044029 12044058 12 76 3.0 1.0 2.0 4.0 105 chr2R 12043953 intergenic not near genes chr2R 12044006 intergenic not near genes chr2R 12044058 intergenic not near genes chr2R_12_12040001 chr2R_12040001 RAL-642 382 chr2R 12045300 12045326 chr2R 12045390 12045417 7 91 3.0 1.0 2.0 2.3 117 chr2R 12045300 intron Drep-1 + chr2R 12045358 intron Drep-1 + chr2R 12045417 intron Drep-1 + chr2R_7_12045001 chr2R_12045001 RAL-642 383 chr2R 12073400 12073422 chr2R 12073490 12073512 4 90 1.5 0.5 1.0 2.0 112 chr2R 12073400 intron CG8888 - chr2R 12073456 intron CG8888 - chr2R 12073512 intron CG8888 - chr2R_4_12070001 chr2R_12070001 RAL-642 384 chr2R 12093956 12093973 chr2R 12094069 12094086 6 113 1.5 0.5 1.0 3.0 130 chr2R 12093956 intron jeb - chr2R 12094021 intron jeb - chr2R 12094086 intron jeb - chr2R_6_12090001 chr2R_12090001 RAL-642 385 chr2R 12124844 12124857 chr2R 12124928 12124941 4 84 3.5 3.5 3.5 0.9 97 chr2R 12124844 intergenic not near genes chr2R 12124892 intergenic not near genes chr2R 12124941 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-642 386 chr2R 12294769 12294803 chr2R 12294856 12294890 11 85 2.0 1.0 1.5 4.4 121 chr2R 12294769 intron CG42700 + chr2R 12294830 intron CG42700 + chr2R 12294890 intron CG42700 + chr2R_11_12290001 chr2R_12290001 RAL-642 387 chr2R 12481153 12481165 chr2R 12482941 12482969 roo 4 1792 2.5 3.5 3.0 1.0 1816 chr2R 12481153 exon Dh44-R2 + chr2R 12482061 intron Dh44-R2 + chr2R 12482969 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-642 388 chr2R 12627491 12627497 chr2R 12627584 12627590 5 93 0.0 2.0 1.0 2.5 99 chr2R 12627491 intron CG17760 + chr2R 12627540 intron CG17760 + chr2R 12627590 intron CG17760 + chr2R_5_12625001 chr2R_12625001 RAL-642 389 chr2R 12771321 12771350 chr2R 12771430 12771459 5 108 1.5 0.5 1.0 2.5 138 chr2R 12771321 intergenic not near genes chr2R 12771390 intergenic not near genes chr2R 12771459 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-642 390 chr2R 12819443 12819466 chr2R 12824520 12824543 jockey 4 5076 3.5 4.5 4.0 0.8 5100 chr2R 12819443 intergenic not near genes chr2R 12821993 intergenic not near genes chr2R 12824543 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-642 391 chr2R 12897465 12897478 chr2R 12897550 12897568 6 90 1.5 0.0 0.8 3.3 103 chr2R 12897465 intron vg + chr2R 12897516 intron vg + chr2R 12897568 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-642 392 chr2R 13019723 13019740 chr2R 13019944 13019961 6 220 3.0 0.5 1.8 2.1 238 chr2R 13019723 intergenic not near genes chr2R 13019842 intergenic not near genes chr2R 13019961 intergenic not near genes chr2R_6_13015001 chr2R_13015001 RAL-642 393 chr2R 13136843 13136870 chr2R 13141633 13141668 Doc 8 4796 2.0 5.0 3.5 1.8 4825 chr2R 13136843 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-642 394 chr2R 13167428 13167452 chr2R 13167522 13167546 5 94 2.0 0.0 1.0 2.5 118 chr2R 13167428 intron GLaz - chr2R 13167487 intron GLaz - chr2R 13167546 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-642 395 chr2R 13220538 13220566 chr2R 13220617 13220645 8 78 0.0 2.0 1.0 4.0 107 chr2R 13220538 intron CG17059 + chr2R 13220592 intron CG17059 + chr2R 13220645 intron CG17059 + chr2R_8_13220001 chr2R_13220001 RAL-642 396 chr2R 13249577 13249596 chr2R 13249666 13249685 5 87 2.5 0.5 1.5 2.0 108 chr2R 13249577 intron CG4712 - chr2R 13249631 intron CG4712 - chr2R 13249685 intron CG4712 - chr2R_5_13245001 chr2R_13245001 RAL-642 397 chr2R 13431489 13431520 chr2R 13431568 13431599 7 79 2.5 2.5 2.5 2.0 110 chr2R 13431489 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-642 398 chr2R 13438866 13438893 chr2R 13440184 13440211 16 1320 10.5 30.5 20.5 0.7 1345 chr2R 13438866 5` UTR CG42321 - chr2R 13439538 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_16_13435001 chr2R_13435001 RAL-642 399 chr2R 13566257 13566291 chr2R 13566337 13566370 7 79 1.0 0.0 0.5 4.7 113 chr2R 13566257 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-642 400 chr2R 13642078 13642094 chr2R 13642137 13642140 6 53 2.5 2.0 2.2 1.9 62 chr2R 13642078 intron fas + chr2R 13642109 intron fas + chr2R 13642140 intron fas + chr2R_6_13640001 chr2R_13640001 RAL-642 401 chr2R 13702170 13702184 chr2R 13702248 13702263 5 78 4.0 4.5 4.2 1.0 93 chr2R 13702170 intron fas + chr2R 13702216 intron fas + chr2R 13702263 intron fas + chr2R_5_13700001 chr2R_13700001 RAL-642 402 chr2R 13721205 13721228 chr2R 13721288 13721296 6 76 4.0 1.0 2.5 1.7 91 chr2R 13721205 intron fas + chr2R 13721250 intron fas + chr2R 13721296 intron fas + chr2R_6_13720001 chr2R_13720001 RAL-642 403 chr2R 13768987 13769005 chr2R 13769084 13769093 8 95 2.5 6.0 4.2 1.5 106 chr2R 13768987 intergenic not near genes chr2R 13769040 intergenic not near genes chr2R 13769093 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-642 404 chr2R 13805592 13805621 chr2R 13805672 13805702 9 81 1.5 0.0 0.8 5.0 110 chr2R 13805592 intergenic stj +,Cpr50Cb + chr2R 13805647 intergenic stj +,Cpr50Cb + chr2R 13805702 intergenic stj +,Cpr50Cb + chr2R_9_13805001 chr2R_13805001 RAL-642 405 chr2R 13905617 13905634 chr2R 13907599 13907599 Rt1a 5 1977 1.5 3.5 2.5 1.4 1982 chr2R 13905617 intron shot - chr2R 13906608 intron shot - chr2R 13907599 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-642 406 chr2R 13963509 13963543 chr2R 13963597 13963631 7 88 0.5 0.0 0.2 5.8 122 chr2R 13963509 intron Cp1 + chr2R 13963570 intron Cp1 + chr2R 13963631 intron Cp1 + chr2R_7_13960001 chr2R_13960001 RAL-642 407 chr2R 14018164 14018183 chr2R 14018248 14018267 6 84 1.0 2.0 1.5 2.4 103 chr2R 14018164 intron mam + chr2R 14018216 intron mam + chr2R 14018267 intron mam + chr2R_6_14015001 chr2R_14015001 RAL-642 408 chr2R 14277579 14277607 chr2R 14277661 14277689 4 82 2.5 3.5 3.0 1.0 110 chr2R 14277579 5` UTR Ih + chr2R 14277634 5` UTR Ih + chr2R 14277689 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-642 409 chr2R 14294835 14294859 chr2R 14294907 14294939 10 78 1.5 2.0 1.8 3.6 104 chr2R 14294835 intron Ih + chr2R 14294887 intron Ih + chr2R 14294939 intron Ih + chr2R_10_14290001 chr2R_14290001 RAL-642 410 chr2R 14378994 14379015 chr2R 14379456 14379478 5 459 4.0 5.0 4.5 0.9 484 chr2R 14378994 intron Dh44-R1 + chr2R 14379236 intron Dh44-R1 + chr2R 14379478 intron Dh44-R1 + chr2R_5_14375001 chr2R_14375001 RAL-642 411 chr2R 14386432 14386466 chr2R 14386519 14386553 5 87 1.5 2.5 2.0 1.7 121 chr2R 14386432 intergenic not near genes chr2R 14386492 intergenic not near genes chr2R 14386553 intergenic not near genes chr2R_5_14385001 chr2R_14385001 RAL-642 412 chr2R 14405556 14405583 chr2R 14405891 14405920 8 334 2.5 4.0 3.2 1.9 364 chr2R 14405556 intergenic not near genes chr2R 14405738 intergenic not near genes chr2R 14405920 intergenic not near genes chr2R_8_14405001 chr2R_14405001 RAL-642 413 chr2R 14467301 14467323 chr2R 14476453 14476475 roo 8 9151 2.0 6.0 4.0 1.6 9174 chr2R 14467301 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476475 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-642 414 chr2R 14653901 14653920 chr2R 14654001 14654020 10 98 6.5 4.0 5.2 1.6 119 chr2R 14653901 intergenic not near genes chr2R 14653960 intergenic not near genes chr2R 14654020 intergenic not near genes chr2R_10_14650001 chr2R_14650001 RAL-642 415 chr2R 14820900 14820931 chr2R 14820985 14821018 10 87 2.5 2.5 2.5 2.9 118 chr2R 14820900 intergenic not near genes chr2R 14820959 intergenic not near genes chr2R 14821018 intergenic not near genes chr2R_10_14820001 chr2R_14820001 RAL-642 416 chr2R 14889213 14889230 chr2R 14897821 14897838 Max-element 6 8607 3.0 1.0 2.0 2.0 8625 chr2R 14889213 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-642 417 chr2R 14922152 14922168 chr2R 14922218 14922240 6 71 3.0 3.5 3.2 1.4 88 chr2R 14922152 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922240 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-642 418 chr2R 14954750 14954785 chr2R 14954823 14954861 4 75 1.0 0.0 0.5 2.7 111 chr2R 14954750 intron aPKC - chr2R 14954806 intron aPKC - chr2R 14954861 intron aPKC - chr2R_4_14950001 chr2R_14950001 RAL-642 419 chr2R 15015456 15015480 chr2R 15022880 15022903 mdg1 8 7424 2.5 1.5 2.0 2.7 7447 chr2R 15015456 intron hbs + chr2R 15019180 intron hbs + chr2R 15022903 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-642 420 chr2R 15051095 15051110 chr2R 15051176 15051192 5 81 0.5 2.0 1.2 2.3 97 chr2R 15051095 intergenic not near genes chr2R 15051144 intergenic not near genes chr2R 15051192 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-642 421 chr2R 15094888 15094916 chr2R 15094962 15094993 5 75 1.0 1.0 1.0 2.5 105 chr2R 15094888 intergenic not near genes chr2R 15094940 intergenic not near genes chr2R 15094993 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-642 422 chr2R 15106549 15106580 chr2R 15106642 15106673 12 92 2.5 1.0 1.8 4.3 124 chr2R 15106549 intergenic not near genes chr2R 15106611 intergenic not near genes chr2R 15106673 intergenic not near genes chr2R_12_15105001 chr2R_15105001 RAL-642 423 chr2R 15119317 15119346 chr2R 15127798 15127826 Tirant 5 8480 3.5 1.5 2.5 1.4 8509 chr2R 15119317 intron chn + chr2R 15123572 intron chn + chr2R 15127826 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-642 424 chr2R 15183037 15183072 chr2R 15183128 15183163 11 90 3.0 2.0 2.5 3.1 126 chr2R 15183037 intron igl + chr2R 15183100 intron igl + chr2R 15183163 intron igl + chr2R_11_15180001 chr2R_15180001 RAL-642 425 chr2R 15390406 15390421 chr2R 15390500 15390515 6 94 1.0 3.5 2.2 1.9 109 chr2R 15390406 intergenic not near genes chr2R 15390460 intergenic not near genes chr2R 15390515 intergenic not near genes chr2R_6_15390001 chr2R_15390001 RAL-642 426 chr2R 15654611 15654642 chr2R 15654720 15654751 9 109 1.5 1.5 1.5 3.6 140 chr2R 15654611 intron CG42524 + chr2R 15654681 intron CG42524 + chr2R 15654751 intron CG42524 + chr2R_9_15650001 chr2R_15650001 RAL-642 427 chr2R 15655987 15656011 chr2R 15656067 15656091 4 80 1.0 5.0 3.0 1.0 104 chr2R 15655987 intron CG42524 + chr2R 15656039 intron CG42524 + chr2R 15656091 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-642 428 chr2R 15700020 15700273 chr2R 15700110 15700365 10 92 2.0 3.0 2.5 2.9 345 chr2R 15700020 intron,5` UTR CG30080 -,CG42662 - chr2R 15700192 intron,5` UTR CG30080 -,CG42662 - chr2R 15700365 intron,5` UTR CG30080 -,CG42662 - chr2R_10_15700001 chr2R_15700001 RAL-642 429 chr2R 15801803 15801810 chr2R 15801907 15801910 4 113 3.5 1.5 2.5 1.1 107 chr2R 15801803 intron,intron Zasp52 -,tun + chr2R 15801856 intron,intron Zasp52 -,tun + chr2R 15801910 intron,intron Zasp52 -,tun + chr2R_4_15800001 chr2R_15800001 RAL-642 430 chr2R 15810395 15810402 chr2R 15810469 15810481 4 78 2.5 4.5 3.5 0.9 86 chr2R 15810395 intron,intron Zasp52 -,tun + chr2R 15810438 intron,intron Zasp52 -,tun + chr2R 15810481 intron,intron Zasp52 -,tun + chr2R_4_15810001 chr2R_15810001 RAL-642 431 chr2R 15869340 15869364 chr2R 15869420 15869443 4 80 0.0 1.5 0.8 2.2 103 chr2R 15869340 intergenic sli -,Rif1 - chr2R 15869392 intergenic sli -,Rif1 - chr2R 15869443 intergenic sli -,Rif1 - chr2R_4_15865001 chr2R_15865001 RAL-642 432 chr2R 15877971 15877998 chr2R 15878056 15878083 6 85 1.5 0.5 1.0 3.0 112 chr2R 15877971 intron sli - chr2R 15878027 intron sli - chr2R 15878083 intron sli - chr2R_6_15875001 chr2R_15875001 RAL-642 433 chr2R 16013555 16013584 chr2R 16013630 16013660 7 76 3.5 2.5 3.0 1.8 105 chr2R 16013555 3` UTR CG8389 + chr2R 16013608 3` UTR CG8389 + chr2R 16013660 3` UTR CG8389 + chr2R_7_16010001 chr2R_16010001 RAL-642 434 chr2R 16641673 16641703 chr2R 16641755 16641767 13 80 5.5 3.5 4.5 2.4 94 chr2R 16641673 5` UTR gprs + chr2R 16641720 intron gprs + chr2R 16641767 intron gprs + chr2R_13_16640001 chr2R_16640001 RAL-642 435 chr2R 16672801 16672814 chr2R 16672881 16672894 4 80 2.0 2.5 2.2 1.2 93 chr2R 16672801 exon CG34458 + chr2R 16672848 3` UTR CG34458 + chr2R 16672894 intergenic CG34458 +,CG30463 - chr2R_4_16670001 chr2R_16670001 RAL-642 436 chr2R 16978478 16978513 chr2R 16978565 16978586 8 81 1.0 1.0 1.0 4.0 108 chr2R 16978478 intron Cbp53E + chr2R 16978532 intron Cbp53E + chr2R 16978586 intron Cbp53E + chr2R_8_16975001 chr2R_16975001 RAL-642 437 chr2R 17147245 17147266 chr2R 17152276 17152297 jockey 10 5031 4.0 6.0 5.0 1.7 5052 chr2R 17147245 intergenic not near genes chr2R 17149771 intergenic not near genes chr2R 17152297 intergenic not near genes chr2R_10_17145001 chr2R_17145001 RAL-642 438 chr2R 17171034 17171039 chr2R 17171117 17171120 5 83 4.0 0.0 2.0 1.7 86 chr2R 17171034 intergenic not near genes chr2R 17171077 intergenic not near genes chr2R 17171120 intergenic not near genes chr2R_5_17170001 chr2R_17170001 RAL-642 439 chr2R 17214683 17214693 chr2R 17214781 17214793 4 96 3.0 1.0 2.0 1.3 110 chr2R 17214683 intergenic not near genes chr2R 17214738 intergenic not near genes chr2R 17214793 intergenic not near genes chr2R_4_17210001 chr2R_17210001 RAL-642 440 chr2R 17221905 17221936 chr2R 17222096 17222113 7 188 1.0 2.0 1.5 2.8 208 chr2R 17221905 intron mbl + chr2R 17222009 intron mbl + chr2R 17222113 intron mbl + chr2R_7_17220001 chr2R_17220001 RAL-642 441 chr2R 17227591 17227608 chr2R 17227724 17227741 5 133 0.0 2.5 1.2 2.3 150 chr2R 17227591 intron mbl + chr2R 17227666 intron mbl + chr2R 17227741 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-642 442 chr2R 17236509 17236536 chr2R 17241713 17241719 copia 9 5202 1.0 2.0 1.5 3.6 5210 chr2R 17236509 intron mbl + chr2R 17239114 intron mbl + chr2R 17241719 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-642 443 chr2R 17351716 17351736 chr2R 17351801 17351820 5 84 1.0 3.0 2.0 1.7 104 chr2R 17351716 intron mbl + chr2R 17351768 intron mbl + chr2R 17351820 intron mbl + chr2R_5_17350001 chr2R_17350001 RAL-642 444 chr2R 17381588 17381611 chr2R 17381676 17381699 4 88 1.0 0.5 0.8 2.2 111 chr2R 17381588 intergenic not near genes chr2R 17381644 intergenic not near genes chr2R 17381699 intergenic not near genes chr2R_4_17380001 chr2R_17380001 RAL-642 445 chr2R 17384517 17384545 chr2R 17384601 17384629 7 83 1.5 1.5 1.5 2.8 112 chr2R 17384517 intergenic not near genes chr2R 17384573 intergenic not near genes chr2R 17384629 intergenic not near genes chr2R_7_17380001 chr2R_17380001 RAL-642 446 chr2R 17395296 17395318 chr2R 17395373 17395394 4 77 0.5 2.5 1.5 1.6 98 chr2R 17395296 intron Sip1 + chr2R 17395345 intron Sip1 + chr2R 17395394 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-642 447 chr2R 17623776 17623784 chr2R 17623907 17623913 4 131 5.0 3.5 4.2 0.8 137 chr2R 17623776 intron CG10936 - chr2R 17623844 intron CG10936 - chr2R 17623913 intron CG10936 - chr2R_4_17620001 chr2R_17620001 RAL-642 448 chr2R 17657348 17657355 chr2R 17657443 17657452 4 96 0.0 2.5 1.2 1.8 104 chr2R 17657348 intron CCHa1-R - chr2R 17657400 intron CCHa1-R - chr2R 17657452 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-642 449 chr2R 17686364 17686400 chr2R 17686724 17686736 11 353 0.5 5.0 2.8 2.9 372 chr2R 17686364 intron,3` UTR HPS4 +,CG42562 + chr2R 17686550 intron HPS4 + chr2R 17686736 intron HPS4 + chr2R_11_17685001 chr2R_17685001 RAL-642 450 chr2R 17784048 17784057 chr2R 17784287 17784298 pogo 4 240 2.5 9.0 5.8 0.6 250 chr2R 17784048 intergenic mir-31a - chr2R 17784173 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-642 451 chr2R 17855532 17855542 chr2R 17855611 17855621 5 79 1.5 2.5 2.0 1.7 89 chr2R 17855532 intron olf186-F + chr2R 17855576 intron olf186-F + chr2R 17855621 intron olf186-F + chr2R_5_17855001 chr2R_17855001 RAL-642 452 chr2R 17997068 17997194 chr2R 17997176 17997257 10 84 4.5 4.0 4.2 1.9 189 chr2R 17997068 intron dpr13 - chr2R 17997162 intron dpr13 - chr2R 17997257 intron dpr13 - chr2R_10_17995001 chr2R_17995001 RAL-642 453 chr2R 18041553 18041578 chr2R 18041637 18041662 5 84 3.5 0.5 2.0 1.7 109 chr2R 18041553 intergenic not near genes chr2R 18041608 intergenic not near genes chr2R 18041662 intergenic not near genes chr2R_5_18040001 chr2R_18040001 RAL-642 454 chr2R 18045305 18045321 chr2R 18045380 18045409 5 85 2.0 0.0 1.0 2.5 104 chr2R 18045305 intergenic CG5770 - chr2R 18045357 intergenic CG5770 - chr2R 18045409 intergenic CG5770 - chr2R_5_18045001 chr2R_18045001 RAL-642 455 chr2R 18245643 18245655 chr2R 18245719 18245731 5 76 0.0 0.5 0.2 4.2 88 chr2R 18245643 intergenic CR44420 - chr2R 18245687 intergenic CR44420 - chr2R 18245731 intergenic CR44420 - chr2R_5_18245001 chr2R_18245001 RAL-642 456 chr2R 18255694 18255703 chr2R 18255908 18255917 5 214 5.5 1.0 3.2 1.2 223 chr2R 18255694 intergenic not near genes chr2R 18255806 intergenic not near genes chr2R 18255917 intergenic not near genes chr2R_5_18255001 chr2R_18255001 RAL-642 457 chr2R 18312372 18312383 chr2R 18312472 18312476 4 98 4.5 4.0 4.2 0.8 104 chr2R 18312372 intron sbb - chr2R 18312424 intron sbb - chr2R 18312476 intron sbb - chr2R_4_18310001 chr2R_18310001 RAL-642 458 chr2R 18312384 18312396 chr2R 18312465 18312489 5 92 4.0 2.0 3.0 1.2 105 chr2R 18312384 intron sbb - chr2R 18312436 intron sbb - chr2R 18312489 intron sbb - chr2R_5_18310001 chr2R_18310001 RAL-642 459 chr2R 18322318 18322346 chr2R 18322398 18322426 6 79 3.0 0.5 1.8 2.1 108 chr2R 18322318 intron sbb - chr2R 18322372 intron sbb - chr2R 18322426 intron sbb - chr2R_6_18320001 chr2R_18320001 RAL-642 460 chr2R 18358396 18358407 chr2R 18372608 18372619 roo 5 14211 1.5 1.5 1.5 2.0 14223 chr2R 18358396 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372619 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-642 461 chr2R 18376339 18376371 chr2R 18376579 18376611 7 237 0.5 0.0 0.2 5.8 272 chr2R 18376339 intergenic not near genes chr2R 18376475 intergenic not near genes chr2R 18376611 intergenic not near genes chr2R_7_18375001 chr2R_18375001 RAL-642 462 chr2R 18376738 18376760 chr2R 18376828 18376850 9 89 1.5 3.5 2.5 2.6 112 chr2R 18376738 intergenic not near genes chr2R 18376794 intergenic not near genes chr2R 18376850 intergenic not near genes chr2R_9_18375001 chr2R_18375001 RAL-642 463 chr2R 18396106 18396124 chr2R 18396173 18396178 6 70 1.0 4.0 2.5 1.7 72 chr2R 18396106 intergenic not near genes chr2R 18396142 intergenic GstE10 - chr2R 18396178 intergenic GstE10 - chr2R_6_18395001 chr2R_18395001 RAL-642 464 chr2R 18402507 18402534 chr2R 18402595 18402622 10 88 2.0 6.5 4.2 1.9 115 chr2R 18402507 intergenic not near genes chr2R 18402564 intergenic not near genes chr2R 18402622 intergenic not near genes chr2R_10_18400001 chr2R_18400001 RAL-642 465 chr2R 18553003 18553037 chr2R 18553083 18553113 11 78 2.5 4.0 3.2 2.6 110 chr2R 18553003 intergenic not near genes chr2R 18553058 intergenic not near genes chr2R 18553113 intergenic not near genes chr2R_11_18550001 chr2R_18550001 RAL-642 466 chr2R 18590889 18590901 chr2R 18600041 18600053 roo 4 9152 2.0 7.5 4.8 0.7 9164 chr2R 18590889 intron GEFmeso - chr2R 18595471 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-642 467 chr2R 18924271 18924302 chr2R 18924351 18924382 8 80 0.5 0.5 0.5 5.3 111 chr2R 18924271 intron sano + chr2R 18924326 intron sano + chr2R 18924382 intron sano + chr2R_8_18920001 chr2R_18920001 RAL-642 468 chr2R 18931530 18931538 chr2R 18931603 18931619 4 78 3.0 2.5 2.8 1.1 89 chr2R 18931530 intron sano + chr2R 18931574 intron sano + chr2R 18931619 intron sano + chr2R_4_18930001 chr2R_18930001 RAL-642 469 chr2R 19026054 19026058 chr2R 19026155 19026159 4 101 3.0 1.5 2.2 1.2 105 chr2R 19026054 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026159 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-642 470 chr2R 19054450 19054472 chr2R 19054531 19054536 6 75 4.0 2.5 3.2 1.4 86 chr2R 19054450 intergenic not near genes chr2R 19054493 intergenic not near genes chr2R 19054536 intergenic not near genes chr2R_6_19050001 chr2R_19050001 RAL-642 471 chr2R 19105861 19105893 chr2R 19106128 19106160 5 267 0.0 0.5 0.2 4.2 299 chr2R 19105861 intron 5-HT1A + chr2R 19106010 intron 5-HT1A + chr2R 19106160 intron 5-HT1A + chr2R_5_19105001 chr2R_19105001 RAL-642 472 chr2R 19133893 19133897 chr2R 19133948 19133970 4 65 2.0 4.0 3.0 1.0 77 chr2R 19133893 3` UTR CG15118 - chr2R 19133932 3` UTR CG15118 - chr2R 19133970 3` UTR CG15118 - chr2R_4_19130001 chr2R_19130001 RAL-642 473 chr2R 19183352 19183372 chr2R 19183422 19183448 8 75 2.5 2.0 2.2 2.5 96 chr2R 19183352 intron hppy + chr2R 19183400 intron hppy + chr2R 19183448 intron hppy + chr2R_8_19180001 chr2R_19180001 RAL-642 474 chr2R 19183645 19183673 chr2R 19183728 19183757 9 81 1.0 0.0 0.5 6.0 112 chr2R 19183645 intron hppy + chr2R 19183701 intron hppy + chr2R 19183757 intron hppy + chr2R_9_19180001 chr2R_19180001 RAL-642 475 chr2R 19210515 19210526 chr2R 19210643 19210654 4 128 1.5 6.0 3.8 0.8 139 chr2R 19210515 intron hppy + chr2R 19210584 intron hppy + chr2R 19210654 intron hppy + chr2R_4_19210001 chr2R_19210001 RAL-642 476 chr2R 19217594 19217607 chr2R 19217689 19217701 4 96 1.0 0.0 0.5 2.7 107 chr2R 19217594 intron hppy + chr2R 19217648 intron hppy + chr2R 19217701 intron hppy + chr2R_4_19215001 chr2R_19215001 RAL-642 477 chr2R 19251351 19251383 chr2R 19251448 19251480 4 96 2.0 2.0 2.0 1.3 129 chr2R 19251351 exon CG33454 - chr2R 19251416 exon CG33454 - chr2R 19251480 exon CG33454 - chr2R_4_19250001 chr2R_19250001 RAL-642 478 chr2R 19354654 19354674 chr2R 19354851 19354870 5 197 4.5 3.0 3.8 1.0 216 chr2R 19354654 intron Rgk1 - chr2R 19354762 intron Rgk1 - chr2R 19354870 intron Rgk1 - chr2R_5_19350001 chr2R_19350001 RAL-642 479 chr2R 19359039 19359066 chr2R 19359121 19359149 8 82 3.0 5.0 4.0 1.6 110 chr2R 19359039 intron CG11961 + chr2R 19359094 intron CG11961 + chr2R 19359149 intron CG11961 + chr2R_8_19355001 chr2R_19355001 RAL-642 480 chr2R 19504363 19504382 chr2R 19504448 19504467 4 85 0.5 1.0 0.8 2.2 104 chr2R 19504363 3` UTR CG11007 + chr2R 19504415 3` UTR CG11007 + chr2R 19504467 3` UTR CG11007 + chr2R_4_19500001 chr2R_19500001 RAL-642 481 chr2R 19588748 19588780 chr2R 19588826 19588857 5 78 0.0 1.5 0.8 2.8 109 chr2R 19588748 intron sm - chr2R 19588802 intron sm - chr2R 19588857 intron sm - chr2R_5_19585001 chr2R_19585001 RAL-642 482 chr2R 19698589 19698614 chr2R 19698671 19698700 5 85 0.0 0.5 0.2 4.2 111 chr2R 19698589 intergenic Obp56a +,Obp56b - chr2R 19698644 intergenic Obp56b -,Obp56a + chr2R 19698700 intergenic Obp56b -,Obp56a + chr2R_5_19695001 chr2R_19695001 RAL-642 483 chr2R 19776620 19776630 chr2R 19779935 19779953 jockey 5 3321 2.0 6.0 4.0 1.0 3333 chr2R 19776620 intergenic not near genes chr2R 19778286 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-642 484 chr2R 19914857 19914873 chr2R 19922269 19922280 mdg1 6 7411 2.0 1.5 1.8 2.1 7423 chr2R 19914857 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922280 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-642 485 chr2R 19957429 19957456 chr2R 19962630 19962658 copia 4 5202 5.0 4.0 4.5 0.7 5229 chr2R 19957429 intergenic CG44623 + chr2R 19960044 intergenic not near genes chr2R 19962658 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-642 486 chr2R 20001563 20001569 chr2R 20001649 20001656 6 87 2.5 5.5 4.0 1.2 93 chr2R 20001563 intergenic not near genes chr2R 20001610 intergenic not near genes chr2R 20001656 intergenic not near genes chr2R_6_20000001 chr2R_20000001 RAL-642 487 chr2R 20029724 20029750 chr2R 20029814 20029838 5 87 0.0 3.0 1.5 2.0 114 chr2R 20029724 intergenic not near genes chr2R 20029781 intergenic not near genes chr2R 20029838 intergenic not near genes chr2R_5_20025001 chr2R_20025001 RAL-642 488 chr2R 20087997 20088028 chr2R 20088105 20088135 6 105 2.5 1.5 2.0 2.0 138 chr2R 20087997 intergenic not near genes chr2R 20088066 intergenic not near genes chr2R 20088135 intergenic not near genes chr2R_6_20085001 chr2R_20085001 RAL-642 489 chr2R 20128867 20128882 chr2R 20129212 20129227 4 345 4.0 2.5 3.2 1.0 360 chr2R 20128867 intergenic not near genes chr2R 20129047 intergenic not near genes chr2R 20129227 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-642 490 chr2R 20128886 20128901 chr2R 20129211 20129243 6 341 1.5 2.5 2.0 2.0 357 chr2R 20128886 intergenic not near genes chr2R 20129064 intergenic not near genes chr2R 20129243 intergenic not near genes chr2R_6_20125001 chr2R_20125001 RAL-642 491 chr2R 20159166 20159189 chr2R 20159279 20159280 6 109 3.5 1.5 2.5 1.7 114 chr2R 20159166 intergenic not near genes chr2R 20159223 intergenic not near genes chr2R 20159280 intergenic not near genes chr2R_6_20155001 chr2R_20155001 RAL-642 492 chr2R 20254804 20254816 chr2R 20254901 20254915 6 100 3.0 0.5 1.8 2.1 111 chr2R 20254804 intergenic CG9864 -,Ate1 - chr2R 20254860 intergenic Ate1 -,CG9864 - chr2R 20254915 intergenic Ate1 -,CG9864 - chr2R_6_20250001 chr2R_20250001 RAL-642 493 chr2R 20321230 20321263 chr2R 20321321 20321354 11 85 1.5 3.0 2.2 3.4 124 chr2R 20321230 intron CG8920 + chr2R 20321292 intron CG8920 + chr2R 20321354 intron CG8920 + chr2R_11_20320001 chr2R_20320001 RAL-642 494 chr2R 20336342 20336375 chr2R 20336436 20336469 7 91 4.5 2.0 3.2 1.7 127 chr2R 20336342 intergenic not near genes chr2R 20336406 intergenic not near genes chr2R 20336469 intergenic not near genes chr2R_7_20335001 chr2R_20335001 RAL-642 495 chr2R 20380071 20380103 chr2R 20380153 20380186 12 79 5.5 5.0 5.2 1.9 115 chr2R 20380071 intergenic not near genes chr2R 20380128 intergenic not near genes chr2R 20380186 intergenic not near genes chr2R_12_20380001 chr2R_20380001 RAL-642 496 chr2R 20387665 20387690 chr2R 20387757 20387781 5 92 3.0 1.0 2.0 1.7 116 chr2R 20387665 intergenic not near genes chr2R 20387723 intergenic not near genes chr2R 20387781 intergenic not near genes chr2R_5_20385001 chr2R_20385001 RAL-642 497 chr2R 20454807 20454832 chr2R 20454888 20454909 7 80 1.0 3.5 2.2 2.2 102 chr2R 20454807 intron CG12484 + chr2R 20454858 intron CG12484 + chr2R 20454909 intron CG12484 + chr2R_7_20450001 chr2R_20450001 RAL-642 498 chr2R 20468866 20468882 chr2R 20468950 20468962 5 83 3.0 3.0 3.0 1.2 96 chr2R 20468866 exon CG12484 + chr2R 20468914 intron CG12484 + chr2R 20468962 intron CG12484 + chr2R_5_20465001 chr2R_20465001 RAL-642 499 chr2R 20577650 20577668 chr2R 20577712 20577745 5 61 4.5 1.5 3.0 1.2 95 chr2R 20577650 intron qsm - chr2R 20577698 intron qsm - chr2R 20577745 intron qsm - chr2R_5_20575001 chr2R_20575001 RAL-642 500 chr2R 20578674 20578680 chr2R 20578749 20578769 4 84 0.0 2.0 1.0 2.0 95 chr2R 20578674 intron qsm - chr2R 20578722 intron qsm - chr2R 20578769 intron qsm - chr2R_4_20575001 chr2R_20575001 RAL-642 501 chr2R 20616948 20616964 chr2R 20617022 20617047 4 81 2.0 1.0 1.5 1.6 99 chr2R 20616948 intron Hil - chr2R 20616998 intron Hil - chr2R 20617047 intron Hil - chr2R_4_20615001 chr2R_20615001 RAL-642 502 chr2R 20739442 20739474 chr2R 20744209 20744242 F-element 7 4766 3.5 6.0 4.8 1.2 4800 chr2R 20739442 intron dpr + chr2R 20741842 intron dpr + chr2R 20744242 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-642 503 chr2R 20840789 20840830 chr2R 20841318 20841349 10 528 2.0 3.5 2.8 2.6 560 chr2R 20840789 intergenic not near genes chr2R 20841069 intergenic not near genes chr2R 20841349 intergenic not near genes chr2R_10_20840001 chr2R_20840001 RAL-642 504 chr2R 21040866 21040892 chr2R 21040940 21040968 5 75 1.0 2.5 1.8 1.8 102 chr2R 21040866 intergenic not near genes chr2R 21040917 intergenic not near genes chr2R 21040968 intergenic not near genes chr2R_5_21040001 chr2R_21040001 RAL-642 505 chr2R 21043678 21043683 chr2R 21043781 21043790 4 106 1.5 4.5 3.0 1.0 112 chr2R 21043678 intergenic not near genes chr2R 21043734 intergenic not near genes chr2R 21043790 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-642 506 chr2R 21370520 21370537 chr2R 21370627 21370644 4 107 4.0 2.0 3.0 1.0 124 chr2R 21370520 intron cv-2 - chr2R 21370582 intron cv-2 - chr2R 21370644 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-642 507 chr2R 21457017 21457036 chr2R 21457109 21457128 11 92 0.0 5.0 2.5 3.1 111 chr2R 21457017 intron Sdc - chr2R 21457072 intron Sdc - chr2R 21457128 intron Sdc - chr2R_11_21455001 chr2R_21455001 RAL-642 508 chr2R 21671545 21671573 chr2R 21671623 21671651 7 78 1.0 2.5 1.8 2.5 106 chr2R 21671545 3` UTR NC2alpha + chr2R 21671598 intergenic NC2alpha +,CG15676 + chr2R 21671651 intergenic CG15676 +,NC2alpha + chr2R_7_21670001 chr2R_21670001 RAL-642 509 chr2R 21710939 21710969 chr2R 21711036 21711066 7 97 0.5 2.5 1.5 2.8 127 chr2R 21710939 intron,intron HmgD +,CG30403 - chr2R 21711002 intron,intron HmgD +,CG30403 - chr2R 21711066 intron,intron HmgD +,CG30403 - chr2R_7_21710001 chr2R_21710001 RAL-642 510 chr2R 21753089 21753111 chr2R 21753574 21753596 roo 5 485 5.5 3.0 4.2 1.0 507 chr2R 21753089 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753596 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-642 511 chr2R 21922592 21922625 chr2R 21922669 21922702 6 76 0.5 2.5 1.5 2.4 110 chr2R 21922592 intron Fili + chr2R 21922647 intron Fili + chr2R 21922702 intron Fili + chr2R_6_21920001 chr2R_21920001 RAL-642 512 chr2R 21946772 21946803 chr2R 21946867 21946888 4 92 0.5 1.5 1.0 2.0 116 chr2R 21946772 intergenic not near genes chr2R 21946830 intergenic not near genes chr2R 21946888 intergenic not near genes chr2R_4_21945001 chr2R_21945001 RAL-642 513 chr2R 22072684 22072711 chr2R 22072769 22072796 9 85 1.5 2.0 1.8 3.2 112 chr2R 22072684 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072796 intron CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-642 514 chr2R 22118425 22118437 chr2R 22118503 22118515 5 78 3.0 2.5 2.8 1.3 90 chr2R 22118425 intron Vrp1 - chr2R 22118470 intron Vrp1 - chr2R 22118515 intron Vrp1 - chr2R_5_22115001 chr2R_22115001 RAL-642 515 chr2R 22124307 22124340 chr2R 22124396 22124429 5 89 0.0 2.5 1.2 2.3 122 chr2R 22124307 3` UTR mei-S332 + chr2R 22124368 intergenic mei-S332 +,GM130 - chr2R 22124429 intergenic mei-S332 +,GM130 - chr2R_5_22120001 chr2R_22120001 RAL-642 516 chr2R 22185689 22185703 chr2R 22185785 22185802 5 98 0.5 1.5 1.0 2.5 113 chr2R 22185689 3` UTR MED16 + chr2R 22185746 3` UTR MED16 + chr2R 22185802 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-642 517 chr2R 22293044 22293061 chr2R 22293123 22293140 5 79 2.5 0.5 1.5 2.0 96 chr2R 22293044 intergenic CG5819 + chr2R 22293092 intergenic CG5819 + chr2R 22293140 intergenic CG5819 + chr2R_5_22290001 chr2R_22290001 RAL-642 518 chr2R 22439712 22439742 chr2R 22439801 22439834 14 85 7.0 1.5 4.2 2.7 122 chr2R 22439712 intergenic not near genes chr2R 22439773 intergenic not near genes chr2R 22439834 intergenic not near genes chr2R_14_22435001 chr2R_22435001 RAL-642 519 chr2R 22465317 22465343 chr2R 22465516 22465542 BS 4 199 1.5 0.5 1.0 2.0 225 chr2R 22465317 intron CG10384 + chr2R 22465430 intron CG10384 + chr2R 22465542 intron CG10384 + chr2R_4_22465001 chr2R_22465001 RAL-642 520 chr2R 22499858 22499887 chr2R 22499933 22499963 6 74 0.0 1.5 0.8 3.3 105 chr2R 22499858 intron px - chr2R 22499910 intron px - chr2R 22499963 intron px - chr2R_6_22495001 chr2R_22495001 RAL-642 521 chr2R 22525755 22525782 chr2R 22529310 22529310 jockey 8 3552 0.5 3.0 1.8 2.9 3555 chr2R 22525755 intron px - chr2R 22527532 intron px - chr2R 22529310 intron px - chr2R_8_22525001 chr2R_22525001 RAL-642 522 chr2R 22541863 22541883 chr2R 22541960 22541983 8 96 2.0 0.5 1.2 3.6 120 chr2R 22541863 intron px - chr2R 22541923 intron px - chr2R 22541983 intron px - chr2R_8_22540001 chr2R_22540001 RAL-642 523 chr2R 22623469 22623485 chr2R 22623595 22623625 4 136 4.0 3.5 3.8 0.8 156 chr2R 22623469 intron CG33143 + chr2R 22623547 intron CG33143 + chr2R 22623625 intron CG33143 + chr2R_4_22620001 chr2R_22620001 RAL-642 524 chr2R 22723245 22723262 chr2R 22723321 22723338 4 75 0.5 3.0 1.8 1.4 93 chr2R 22723245 intron jbug - chr2R 22723292 intron jbug - chr2R 22723338 intron jbug - chr2R_4_22720001 chr2R_22720001 RAL-642 525 chr2R 22834231 22834463 chr2R 22836355 22836601 4 2134 4.0 3.0 3.5 0.9 2370 chr2R 22834231 intron CG30265 + chr2R 22835416 exon CG12490 + chr2R 22836601 3` UTR CG12490 + chr2R_4_22835001 chr2R_22835001 RAL-642 526 chr2R 22907403 22907435 chr2R 22907496 22907527 10 90 4.0 3.5 3.8 2.1 124 chr2R 22907403 intron nahoda + chr2R 22907465 intron nahoda + chr2R 22907527 intron nahoda + chr2R_10_22905001 chr2R_22905001 RAL-642 527 chr2R 22942631 22942649 chr2R 22942743 22942746 8 110 3.0 5.0 4.0 1.6 115 chr2R 22942631 5` UTR CG42694 + chr2R 22942688 5` UTR CG42694 + chr2R 22942746 5` UTR CG42694 + chr2R_8_22940001 chr2R_22940001 RAL-642 528 chr2R 22951719 22951860 chr2R 22951859 22951946 5 128 0.0 0.0 0.0 5.0 227 chr2R 22951719 3` UTR CR32835 - chr2R 22951832 3` UTR CR32835 - chr2R 22951946 intron CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-642 529 chr2R 22991630 22991660 chr2R 22991722 22991751 10 92 0.0 3.0 1.5 4.0 121 chr2R 22991630 intron twi + chr2R 22991690 intron twi + chr2R 22991751 intron twi + chr2R_10_22990001 chr2R_22990001 RAL-642 530 chr2R 23038459 23038483 chr2R 23038544 23038568 4 85 1.0 0.5 0.8 2.2 109 chr2R 23038459 intron,intron twi +,CG42741 - chr2R 23038514 intron,intron twi +,CG42741 - chr2R 23038568 intron,intron twi +,CG42741 - chr2R_4_23035001 chr2R_23035001 RAL-642 531 chr2R 23052653 23052673 chr2R 23052729 23052749 4 76 4.0 3.0 3.5 0.9 96 chr2R 23052653 intergenic not near genes chr2R 23052701 intergenic not near genes chr2R 23052749 intergenic not near genes chr2R_4_23050001 chr2R_23050001 RAL-642 532 chr2R 23061754 23061783 chr2R 23061830 23061858 7 76 1.0 2.5 1.8 2.5 104 chr2R 23061754 3` UTR l(2)06496 - chr2R 23061806 3` UTR l(2)06496 - chr2R 23061858 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-642 533 chr2R 23155719 23155745 chr2R 23155845 23155866 4 125 1.5 3.0 2.2 1.2 147 chr2R 23155719 intron CG9899 + chr2R 23155792 intron CG9899 + chr2R 23155866 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-642 534 chr2R 23356273 23356306 chr2R 23356362 23356394 9 87 1.0 3.0 2.0 3.0 121 chr2R 23356273 3` UTR Rpi + chr2R 23356334 3` UTR Rpi + chr2R 23356394 3` UTR,3` UTR Rpi +,CG3500 - chr2R_9_23355001 chr2R_23355001 RAL-642 535 chr2R 23411064 23411076 chr2R 23411146 23411158 5 81 0.5 1.0 0.8 2.8 94 chr2R 23411064 intergenic not near genes chr2R 23411111 intergenic not near genes chr2R 23411158 intergenic not near genes chr2R_5_23410001 chr2R_23410001 RAL-642 536 chr2R 23493667 23493675 chr2R 23493753 23493761 5 86 4.5 3.5 4.0 1.0 94 chr2R 23493667 intergenic not near genes chr2R 23493714 intergenic not near genes chr2R 23493761 intergenic not near genes chr2R_5_23490001 chr2R_23490001 RAL-642 537 chr2R 23529585 23529604 chr2R 23537148 23537156 412 6 7566 3.5 3.5 3.5 1.3 7571 chr2R 23529585 intron bw - chr2R 23533370 intron bw - chr2R 23537156 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-642 538 chr2R 23607039 23607163 chr2R 23607120 23607253 7 81 5.0 3.5 4.2 1.3 214 chr2R 23607039 intron CG17664 - chr2R 23607146 intron CG17664 - chr2R 23607253 intron CG17664 - chr2R_7_23605001 chr2R_23605001 RAL-642 539 chr2R 23716497 23716523 chr2R 23716575 23716602 8 79 3.0 2.5 2.8 2.1 105 chr2R 23716497 intron Sesn + chr2R 23716550 intron Sesn + chr2R 23716602 intron Sesn + chr2R_8_23715001 chr2R_23715001 RAL-642 540 chr2R 23739184 23739212 chr2R 23739262 23739290 5 78 5.0 0.5 2.8 1.3 106 chr2R 23739184 intron egl - chr2R 23739237 intron egl - chr2R 23739290 intron egl - chr2R_5_23735001 chr2R_23735001 RAL-642 541 chr2R 23914317 23914332 chr2R 23921933 23921956 412 6 7619 1.0 7.0 4.0 1.2 7639 chr2R 23914317 exon kcc + chr2R 23918136 intron kcc + chr2R 23921956 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-642 542 chr2R 24031383 24031404 chr2R 24031465 24031488 5 83 1.5 1.0 1.2 2.3 105 chr2R 24031383 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031488 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-642 543 chr2R 24204573 24204583 chr2R 24204655 24204664 4 82 3.0 4.0 3.5 0.9 91 chr2R 24204573 intron CG11406 - chr2R 24204618 intron CG11406 - chr2R 24204664 intron CG11406 - chr2R_4_24200001 chr2R_24200001 RAL-642 544 chr2R 24353428 24353456 chr2R 24361789 24361818 roo 11 8361 2.5 1.5 2.0 3.7 8390 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357623 intron,intron bs +,CR44811 - chr2R 24361818 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-642 545 chr2R 24383829 24383858 chr2R 24383910 24383939 12 81 1.5 4.5 3.0 3.0 110 chr2R 24383829 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383939 exon mAChR-A - chr2R_12_24380001 chr2R_24380001 RAL-642 546 chr2R 24609119 24609151 chr2R 24609208 24609216 5 82 3.5 2.5 3.0 1.2 97 chr2R 24609119 exon CG42360 + chr2R 24609168 exon CG42360 + chr2R 24609216 exon CG42360 + chr2R_5_24605001 chr2R_24605001 RAL-642 547 chr2R 24727884 24727917 chr2R 24735392 24735396 mdg1 7 7503 2.0 4.5 3.2 1.7 7512 chr2R 24727884 intron Mid1 - chr2R 24731640 intron Mid1 - chr2R 24735396 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-642 548 chr2R 24763616 24763641 chr2R 24765584 24765605 G2 10 1971 5.0 4.0 4.5 1.8 1989 chr2R 24763616 exon CG3894 + chr2R 24764610 intron CG3894 + chr2R 24765605 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-642 549 chr2R 24859844 24859857 chr2R 24859929 24859943 6 84 6.5 1.0 3.8 1.2 99 chr2R 24859844 5` UTR CR44829 + chr2R 24859894 5` UTR CR44829 + chr2R 24859943 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-642 550 chr2R 25014546 25014576 chr2R 25014622 25014652 13 73 6.5 2.5 4.5 2.4 106 chr2R 25014546 intron uzip + chr2R 25014599 intron uzip + chr2R 25014652 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-642 551 chr2R 25018340 25018376 chr2R 25018439 25018477 8 97 2.0 5.5 3.8 1.7 137 chr2R 25018340 intron uzip + chr2R 25018408 intron uzip + chr2R 25018477 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-642 552 chr2R 25047238 25047250 chr2R 25047668 25047679 5 430 3.0 4.0 3.5 1.1 441 chr2R 25047238 intron gsb-n - chr2R 25047458 intron gsb-n - chr2R 25047679 intron gsb-n - chr2R_5_25045001 chr2R_25045001 RAL-642 553 chr3L 51383 51418 chr3L 51481 51515 7 94 2.5 0.5 1.5 2.8 132 chr3L 51383 intergenic not near genes chr3L 51449 intergenic not near genes chr3L 51515 intergenic not near genes chr3L_7_50001 chr3L_50001 RAL-642 554 chr3L 155796 155812 chr3L 155868 155889 5 76 2.0 0.5 1.2 2.3 93 chr3L 155796 intron p130CAS + chr3L 155842 intron p130CAS + chr3L 155889 intron p130CAS + chr3L_5_155001 chr3L_155001 RAL-642 555 chr3L 402690 402718 chr3L 409742 409758 297 9 7048 4.5 1.5 3.0 2.2 7068 chr3L 402690 intergenic not near genes chr3L 406224 intergenic not near genes chr3L 409758 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-642 556 chr3L 421049 421075 chr3L 421145 421171 7 96 4.0 1.0 2.5 2.0 122 chr3L 421049 intergenic not near genes chr3L 421110 intergenic not near genes chr3L 421171 intergenic not near genes chr3L_7_420001 chr3L_420001 RAL-642 557 chr3L 642475 642500 chr3L 642561 642591 6 89 2.5 1.5 2.0 2.0 116 chr3L 642475 5` UTR CR43334 + chr3L 642533 5` UTR CR43334 + chr3L 642591 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-642 558 chr3L 858005 858019 chr3L 866478 866495 Tirant 6 8475 4.0 3.5 3.8 1.2 8490 chr3L 858005 intergenic not near genes chr3L 862250 intergenic not near genes chr3L 866495 intergenic CG12502 + chr3L_6_860001 chr3L_860001 RAL-642 559 chr3L 925175 925201 chr3L 932601 932623 mdg1 12 7425 3.5 2.5 3.0 3.0 7448 chr3L 925175 intron Glut1 + chr3L 928899 intron Glut1 + chr3L 932623 intron Glut1 + chr3L_12_925001 chr3L_925001 RAL-642 560 chr3L 933918 933942 chr3L 934021 934045 8 102 1.5 1.0 1.2 3.6 127 chr3L 933918 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-642 561 chr3L 939787 939802 chr3L 940896 940918 jockey 5 1118 3.5 3.5 3.5 1.1 1131 chr3L 939787 intron Glut1 + chr3L 940352 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-642 562 chr3L 1015139 1015165 chr3L 1015226 1015251 4 86 0.5 1.5 1.0 2.0 112 chr3L 1015139 intron trio - chr3L 1015195 intron trio - chr3L 1015251 intron trio - chr3L_4_1015001 chr3L_1015001 RAL-642 563 chr3L 1031182 1031194 chr3L 1031281 1031293 4 99 3.0 2.5 2.8 1.1 111 chr3L 1031182 intron trio - chr3L 1031238 intron trio - chr3L 1031293 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-642 564 chr3L 1063337 1063363 chr3L 1063713 1063738 6 374 0.5 0.5 0.5 4.0 401 chr3L 1063337 intron bab1 - chr3L 1063538 intron bab1 - chr3L 1063738 intron bab1 - chr3L_6_1060001 chr3L_1060001 RAL-642 565 chr3L 1109633 1109654 chr3L 1109720 1109742 9 88 1.0 4.0 2.5 2.6 109 chr3L 1109633 intergenic not near genes chr3L 1109688 intergenic not near genes chr3L 1109742 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-642 566 chr3L 1175726 1175755 chr3L 1175858 1175886 9 130 1.5 1.0 1.2 4.1 160 chr3L 1175726 intron bab2 - chr3L 1175806 intron bab2 - chr3L 1175886 intron bab2 - chr3L_9_1175001 chr3L_1175001 RAL-642 567 chr3L 1219595 1219619 chr3L 1227328 1227328 412 6 7728 4.5 3.0 3.8 1.2 7733 chr3L 1219595 intron mwh + chr3L 1223462 intron mwh + chr3L 1227328 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-642 568 chr3L 1257634 1257654 chr3L 1257714 1257732 8 80 0.0 3.0 1.5 3.2 98 chr3L 1257634 intron CG9134 + chr3L 1257683 intron CG9134 + chr3L 1257732 intron CG9134 + chr3L_8_1255001 chr3L_1255001 RAL-642 569 chr3L 1374434 1374462 chr3L 1374511 1374520 5 70 3.0 2.0 2.5 1.4 86 chr3L 1374434 intron,intron Ptp61F -,ru + chr3L 1374477 intron,intron Ptp61F -,ru + chr3L 1374520 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-642 570 chr3L 1396745 1396755 chr3L 1396826 1396839 6 83 6.5 7.0 6.8 0.8 94 chr3L 1396745 intron Ptp61F - chr3L 1396792 intron Ptp61F - chr3L 1396839 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-642 571 chr3L 1415782 1415807 chr3L 1415856 1415879 10 78 2.0 3.5 2.8 2.6 97 chr3L 1415782 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415879 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-642 572 chr3L 1505999 1506030 chr3L 1513596 1513627 17.6 4 7596 2.5 3.5 3.0 1.0 7628 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509813 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-642 573 chr3L 1684020 1684039 chr3L 1684098 1684108 9 75 5.0 3.0 4.0 1.8 88 chr3L 1684020 intron CG7991 + chr3L 1684064 intron CG7991 + chr3L 1684108 intron CG7991 + chr3L_9_1680001 chr3L_1680001 RAL-642 574 chr3L 1809640 1809671 chr3L 1809728 1809745 4 84 0.0 1.5 0.8 2.2 105 chr3L 1809640 intergenic not near genes chr3L 1809692 intergenic not near genes chr3L 1809745 intergenic not near genes chr3L_4_1805001 chr3L_1805001 RAL-642 575 chr3L 1879133 1879140 chr3L 1879210 1879218 4 78 2.5 0.0 1.2 1.8 85 chr3L 1879133 intron CG13937 - chr3L 1879176 intron CG13937 - chr3L 1879218 intron CG13937 - chr3L_4_1875001 chr3L_1875001 RAL-642 576 chr3L 1978896 1978929 chr3L 1978973 1979008 10 72 3.0 3.0 3.0 2.5 112 chr3L 1978896 intergenic not near genes chr3L 1978952 intergenic not near genes chr3L 1979008 intergenic not near genes chr3L_10_1975001 chr3L_1975001 RAL-642 577 chr3L 1980667 1980700 chr3L 1980747 1980780 7 80 0.5 2.5 1.5 2.8 113 chr3L 1980667 intergenic not near genes chr3L 1980724 intergenic not near genes chr3L 1980780 intergenic not near genes chr3L_7_1980001 chr3L_1980001 RAL-642 578 chr3L 2139205 2139223 chr3L 2139286 2139304 6 81 6.0 2.5 4.2 1.2 99 chr3L 2139205 intron zormin - chr3L 2139254 intron zormin - chr3L 2139304 intron zormin - chr3L_6_2135001 chr3L_2135001 RAL-642 579 chr3L 2168775 2168808 chr3L 2168863 2168899 13 90 2.5 5.0 3.8 2.7 124 chr3L 2168775 exon CG15879 - chr3L 2168837 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_13_2165001 chr3L_2165001 RAL-642 580 chr3L 2187624 2187640 chr3L 2187686 2187715 8 78 1.0 2.5 1.8 2.9 91 chr3L 2187624 exon CG13810 + chr3L 2187670 3` UTR CG13810 + chr3L 2187715 intergenic CG13810 + chr3L_8_2185001 chr3L_2185001 RAL-642 581 chr3L 2277979 2278010 chr3L 2278171 2278206 5 194 2.0 0.5 1.2 2.3 227 chr3L 2277979 3` UTR yellow-g2 + chr3L 2278092 intergenic yellow-g2 + chr3L 2278206 intergenic yellow-g2 + chr3L_5_2275001 chr3L_2275001 RAL-642 582 chr3L 2308005 2308030 chr3L 2308111 2308136 6 106 2.5 2.5 2.5 1.7 131 chr3L 2308005 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308136 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-642 583 chr3L 2331587 2331604 chr3L 2331663 2331681 5 77 4.0 1.5 2.8 1.3 94 chr3L 2331587 intron MsR1 + chr3L 2331634 intron MsR1 + chr3L 2331681 intron MsR1 + chr3L_5_2330001 chr3L_2330001 RAL-642 584 chr3L 2447528 2447536 chr3L 2456659 2456692 roo 7 9146 1.5 3.5 2.5 2.0 9164 chr3L 2447528 intron CG45186 + chr3L 2452110 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-642 585 chr3L 2533652 2533678 chr3L 2533732 2533742 6 77 2.0 2.5 2.2 1.9 90 chr3L 2533652 intron Spn - chr3L 2533697 intron Spn - chr3L 2533742 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-642 586 chr3L 2534621 2534645 chr3L 2534704 2534728 9 83 0.0 5.0 2.5 2.6 107 chr3L 2534621 intron Spn - chr3L 2534674 intron Spn - chr3L 2534728 exon Spn - chr3L_9_2530001 chr3L_2530001 RAL-642 587 chr3L 2626432 2626446 chr3L 2626523 2626540 4 93 5.0 2.5 3.8 0.8 108 chr3L 2626432 intron Pxn - chr3L 2626486 intron Pxn - chr3L 2626540 intron Pxn - chr3L_4_2625001 chr3L_2625001 RAL-642 588 chr3L 2631062 2631094 chr3L 2631172 2631204 13 109 1.5 1.5 1.5 5.2 142 chr3L 2631062 intergenic CR45660 - chr3L 2631133 intergenic CR45660 - chr3L 2631204 intergenic not near genes chr3L_13_2630001 chr3L_2630001 RAL-642 589 chr3L 2683958 2683974 chr3L 2684033 2684050 4 76 1.5 3.0 2.2 1.2 92 chr3L 2683958 intron Fife - chr3L 2684004 intron Fife - chr3L 2684050 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-642 590 chr3L 2685753 2685766 chr3L 2685873 2685886 4 120 1.5 3.5 2.5 1.1 133 chr3L 2685753 intron Fife - chr3L 2685820 intron Fife - chr3L 2685886 intron Fife - chr3L_4_2685001 chr3L_2685001 RAL-642 591 chr3L 2700914 2700936 chr3L 2701330 2701356 9 418 4.5 7.5 6.0 1.3 442 chr3L 2700914 intron Fife - chr3L 2701135 intron Fife - chr3L 2701356 intron Fife - chr3L_9_2700001 chr3L_2700001 RAL-642 592 chr3L 2795733 2795743 chr3L 2795854 2795865 4 122 2.0 1.0 1.5 1.6 132 chr3L 2795733 intron CG43444 - chr3L 2795799 intron CG43444 - chr3L 2795865 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-642 593 chr3L 2854497 2854500 chr3L 2854555 2854576 4 70 2.5 1.5 2.0 1.3 79 chr3L 2854497 intron CG43444 - chr3L 2854536 intron CG43444 - chr3L 2854576 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-642 594 chr3L 2927838 2927862 chr3L 2936114 2936136 Tirant 6 8276 1.5 1.0 1.2 2.7 8298 chr3L 2927838 intron Shab + chr3L 2931987 intron Shab + chr3L 2936136 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-642 595 chr3L 2987743 2987754 chr3L 2988002 2988008 4 258 2.5 8.0 5.2 0.6 265 chr3L 2987743 intergenic not near genes chr3L 2987876 intergenic not near genes chr3L 2988008 intergenic not near genes chr3L_4_2985001 chr3L_2985001 RAL-642 596 chr3L 3251661 3251671 chr3L 3251865 3251874 4 204 1.0 0.5 0.8 2.2 213 chr3L 3251661 5` UTR CR43626 + chr3L 3251768 5` UTR CR43626 + chr3L 3251874 5` UTR CR43626 + chr3L_4_3250001 chr3L_3250001 RAL-642 597 chr3L 3281438 3281458 chr3L 3281934 3281935 Doc 5 492 3.0 6.0 4.5 0.9 497 chr3L 3281438 intron CG12017 + chr3L 3281686 intron CG12017 + chr3L 3281935 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-642 598 chr3L 3281459 3281475 chr3L 3281933 3281970 Doc 9 493 1.5 5.5 3.5 2.0 511 chr3L 3281459 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-642 599 chr3L 3294138 3294147 chr3L 3294228 3294238 4 90 0.5 0.5 0.5 2.7 100 chr3L 3294138 intron CG12009 + chr3L 3294188 intron CG12009 + chr3L 3294238 intron CG12009 + chr3L_4_3290001 chr3L_3290001 RAL-642 600 chr3L 3314170 3314203 chr3L 3314279 3314284 6 104 2.0 4.5 3.2 1.4 114 chr3L 3314170 intergenic ZnT63C +,Drsl2 + chr3L 3314227 intergenic Drsl2 +,ZnT63C + chr3L 3314284 intergenic Drsl2 +,ZnT63C + chr3L_6_3310001 chr3L_3310001 RAL-642 601 chr3L 3475075 3475095 chr3L 3475518 3475538 jockey 11 443 2.5 4.5 3.5 2.4 463 chr3L 3475075 intron CG42324 + chr3L 3475306 intron CG42324 + chr3L 3475538 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-642 602 chr3L 3484413 3484443 chr3L 3484490 3484520 5 75 2.0 1.5 1.8 1.8 107 chr3L 3484413 intron,intron CG42324 +,CG43074 - chr3L 3484466 intron,exon CG42324 +,CG43074 - chr3L 3484520 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-642 603 chr3L 3601297 3601321 chr3L 3606607 3606632 copia 4 5310 4.5 1.5 3.0 1.0 5335 chr3L 3601297 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-642 604 chr3L 3611005 3611032 chr3L 3611089 3611116 7 84 3.0 7.5 5.2 1.1 111 chr3L 3611005 intergenic Eip63E + chr3L 3611060 intergenic not near genes chr3L 3611116 intergenic not near genes chr3L_7_3610001 chr3L_3610001 RAL-642 605 chr3L 3758156 3758176 chr3L 3758266 3758290 8 114 3.0 1.5 2.2 2.5 134 chr3L 3758156 intron CG32264 - chr3L 3758223 intron CG32264 - chr3L 3758290 intron CG32264 - chr3L_8_3755001 chr3L_3755001 RAL-642 606 chr3L 3914182 3914203 chr3L 3914267 3914288 4 85 4.0 5.5 4.8 0.7 106 chr3L 3914182 intron Eip63F-1 - chr3L 3914235 intron Eip63F-1 - chr3L 3914288 intron Eip63F-1 - chr3L_4_3910001 chr3L_3910001 RAL-642 607 chr3L 4015737 4015764 chr3L 4015820 4015847 8 83 2.5 2.0 2.2 2.5 110 chr3L 4015737 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015847 intergenic not near genes chr3L_8_4015001 chr3L_4015001 RAL-642 608 chr3L 4230942 4230970 chr3L 4231020 4231022 6 69 3.0 5.0 4.0 1.2 80 chr3L 4230942 intron ImpL2 - chr3L 4230982 intron ImpL2 - chr3L 4231022 intron ImpL2 - chr3L_6_4230001 chr3L_4230001 RAL-642 609 chr3L 4397439 4397470 chr3L 4397569 4397600 4 130 0.5 1.5 1.0 2.0 161 chr3L 4397439 intron slow + chr3L 4397520 intron slow + chr3L 4397600 intron slow + chr3L_4_4395001 chr3L_4395001 RAL-642 610 chr3L 4486244 4486278 chr3L 4486338 4486338 4 73 2.5 6.5 4.5 0.7 94 chr3L 4486244 exon CG13722 - chr3L 4486291 exon CG13722 - chr3L 4486338 exon CG13722 - chr3L_4_4485001 chr3L_4485001 RAL-642 611 chr3L 4519420 4519451 chr3L 4519496 4519527 9 76 3.0 1.0 2.0 3.0 107 chr3L 4519420 intron Tie - chr3L 4519474 intron Tie - chr3L 4519527 intron Tie - chr3L_9_4515001 chr3L_4515001 RAL-642 612 chr3L 4597218 4597245 chr3L 4597298 4597327 8 79 1.5 3.5 2.5 2.3 109 chr3L 4597218 intron Src64B - chr3L 4597272 intron Src64B - chr3L 4597327 intron Src64B - chr3L_8_4595001 chr3L_4595001 RAL-642 613 chr3L 4901125 4901150 chr3L 4907315 4907340 diver 4 6188 5.0 2.0 3.5 0.9 6215 chr3L 4901125 intergenic CG13704 + chr3L 4904232 intergenic not near genes chr3L 4907340 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-642 614 chr3L 5104487 5104512 chr3L 5124621 5124646 4 20134 0.0 1.5 0.8 2.2 20159 chr3L 5104487 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-642 615 chr3L 5384334 5384347 chr3L 5384393 5384393 4 62 1.5 5.5 3.5 0.9 59 chr3L 5384334 intergenic not near genes chr3L 5384364 intergenic not near genes chr3L 5384393 intergenic not near genes chr3L_4_5380001 chr3L_5380001 RAL-642 616 chr3L 5392369 5392395 chr3L 5392626 5392657 12 261 1.5 5.0 3.2 2.9 288 chr3L 5392369 intergenic not near genes chr3L 5392513 intergenic not near genes chr3L 5392657 intergenic not near genes chr3L_12_5390001 chr3L_5390001 RAL-642 617 chr3L 5745586 5745607 chr3L 5745669 5745690 5 83 0.5 1.0 0.8 2.8 104 chr3L 5745586 intron sif + chr3L 5745638 intron sif + chr3L 5745690 intron sif + chr3L_5_5745001 chr3L_5745001 RAL-642 618 chr3L 5839307 5839325 chr3L 5839854 5839872 6 547 5.0 1.5 3.2 1.4 565 chr3L 5839307 intron vn - chr3L 5839590 intron vn - chr3L 5839872 intron vn - chr3L_6_5835001 chr3L_5835001 RAL-642 619 chr3L 5926323 5926350 chr3L 5926505 5926516 BS 9 181 4.5 6.0 5.2 1.5 193 chr3L 5926323 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926516 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-642 620 chr3L 5949421 5949441 chr3L 5949504 5949532 5 89 0.5 3.0 1.8 1.8 111 chr3L 5949421 intron CG33993 - chr3L 5949476 intron CG33993 - chr3L 5949532 intron CG33993 - chr3L_5_5945001 chr3L_5945001 RAL-642 621 chr3L 6052136 6052148 chr3L 6052222 6052234 7 85 0.0 2.0 1.0 3.5 98 chr3L 6052136 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052185 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052234 intergenic Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-642 622 chr3L 6052652 6052665 chr3L 6052737 6052750 6 85 6.0 8.5 7.2 0.7 98 chr3L 6052652 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-642 623 chr3L 6185607 6185628 chr3L 6185685 6185706 9 77 3.5 2.0 2.8 2.4 99 chr3L 6185607 exon CG43293 + chr3L 6185656 intron CG43293 + chr3L 6185706 exon CG43293 + chr3L_9_6185001 chr3L_6185001 RAL-642 624 chr3L 6220917 6220948 chr3L 6230069 6230099 roo 6 9151 5.0 5.5 5.2 1.0 9182 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-642 625 chr3L 6335024 6335038 chr3L 6335495 6335509 297 5 469 2.0 6.0 4.0 1.0 485 chr3L 6335024 intron CG13300 - chr3L 6335266 intron CG13300 - chr3L 6335509 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-642 626 chr3L 6466038 6466055 chr3L 6466107 6466140 7 82 1.5 4.0 2.8 1.8 102 chr3L 6466038 intron CG42747 + chr3L 6466089 intron CG42747 + chr3L 6466140 intron CG42747 + chr3L_7_6465001 chr3L_6465001 RAL-642 627 chr3L 6528195 6528219 chr3L 6528273 6528296 6 77 4.0 2.5 3.2 1.4 101 chr3L 6528195 intron sfl + chr3L 6528246 intron sfl + chr3L 6528296 intron sfl + chr3L_6_6525001 chr3L_6525001 RAL-642 628 chr3L 6562847 6562864 chr3L 6562927 6562944 5 80 2.0 2.0 2.0 1.7 97 chr3L 6562847 intron CG18769 + chr3L 6562896 intron CG18769 + chr3L 6562944 intron CG18769 + chr3L_5_6560001 chr3L_6560001 RAL-642 629 chr3L 6683113 6683142 chr3L 6684558 6684589 13 1446 3.5 3.5 3.5 2.9 1476 chr3L 6683113 intergenic not near genes chr3L 6683851 intergenic not near genes chr3L 6684589 intergenic not near genes chr3L_13_6680001 chr3L_6680001 RAL-642 630 chr3L 6887519 6887550 chr3L 6895011 6895042 roo 4 7492 2.5 1.5 2.0 1.3 7523 chr3L 6887519 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-642 631 chr3L 6974503 6974524 chr3L 6974604 6974625 8 101 0.5 2.0 1.2 3.6 122 chr3L 6974503 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974625 intron Galphai - chr3L_8_6970001 chr3L_6970001 RAL-642 632 chr3L 7033171 7033205 chr3L 7033251 7033283 14 78 1.5 4.0 2.8 3.7 112 chr3L 7033171 intron Mp + chr3L 7033227 intron Mp + chr3L 7033283 intron Mp + chr3L_14_7030001 chr3L_7030001 RAL-642 633 chr3L 7079610 7079637 chr3L 7079684 7079714 7 76 3.5 1.0 2.2 2.2 104 chr3L 7079610 intergenic not near genes chr3L 7079662 intergenic not near genes chr3L 7079714 intergenic not near genes chr3L_7_7075001 chr3L_7075001 RAL-642 634 chr3L 7150017 7150043 chr3L 7150096 7150122 6 77 0.0 1.5 0.8 3.3 105 chr3L 7150017 intron corn - chr3L 7150070 intron corn - chr3L 7150122 intron corn - chr3L_6_7150001 chr3L_7150001 RAL-642 635 chr3L 7285455 7285477 chr3L 7285529 7285555 6 77 1.0 4.5 2.8 1.6 100 chr3L 7285455 intron unc-13-4A - chr3L 7285505 intron unc-13-4A - chr3L 7285555 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-642 636 chr3L 7426016 7426040 chr3L 7426397 7426419 5 381 1.5 6.0 3.8 1.0 403 chr3L 7426016 intron CG42458 + chr3L 7426218 intron CG42458 + chr3L 7426419 intron CG42458 + chr3L_5_7425001 chr3L_7425001 RAL-642 637 chr3L 7626940 7626965 chr3L 7627010 7627050 4 78 2.0 0.0 1.0 2.0 110 chr3L 7626940 intron CG33275 + chr3L 7626995 intron CG33275 + chr3L 7627050 intron CG33275 + chr3L_4_7625001 chr3L_7625001 RAL-642 638 chr3L 7752152 7752177 chr3L 7752254 7752282 6 106 3.0 5.0 4.0 1.2 130 chr3L 7752152 intron CG32373 + chr3L 7752217 intron CG32373 + chr3L 7752282 intron CG32373 + chr3L_6_7750001 chr3L_7750001 RAL-642 639 chr3L 7761430 7761462 chr3L 7761507 7761539 6 77 2.5 2.5 2.5 1.7 109 chr3L 7761430 intron Hn + chr3L 7761484 intron Hn + chr3L 7761539 intron Hn + chr3L_6_7760001 chr3L_7760001 RAL-642 640 chr3L 7787379 7787394 chr3L 7787446 7787466 4 72 1.5 2.0 1.8 1.4 87 chr3L 7787379 intron CG32369 - chr3L 7787422 intron CG32369 - chr3L 7787466 intron CG32369 - chr3L_4_7785001 chr3L_7785001 RAL-642 641 chr3L 7793729 7793745 chr3L 7800781 7800797 297 6 7052 1.0 2.0 1.5 2.4 7068 chr3L 7793729 intron CG32369 - chr3L 7797263 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-642 642 chr3L 7863629 7863648 chr3L 7863881 7863900 4 252 1.5 0.5 1.0 2.0 271 chr3L 7863629 intron Pdp1 - chr3L 7863764 intron Pdp1 - chr3L 7863900 intron Pdp1 - chr3L_4_7860001 chr3L_7860001 RAL-642 643 chr3L 7886529 7886547 chr3L 7889047 7889065 Stalker4 4 2518 0.0 2.0 1.0 2.0 2536 chr3L 7886529 intron CG32365 + chr3L 7887797 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-642 644 chr3L 7985361 7985397 chr3L 7987689 7987725 NOF 7 2328 1.5 1.5 1.5 2.8 2364 chr3L 7985361 intron nmo + chr3L 7986543 intron nmo + chr3L 7987725 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-642 645 chr3L 8295791 8295826 chr3L 8295949 8295983 10 157 3.0 2.5 2.8 2.6 192 chr3L 8295791 intergenic CG7201 - chr3L 8295887 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_10_8295001 chr3L_8295001 RAL-642 646 chr3L 8481794 8481802 chr3L 8490943 8490959 roo 4 9156 5.5 6.0 5.8 0.6 9165 chr3L 8481794 intron CG43163 - chr3L 8486376 intron CG43163 - chr3L 8490959 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-642 647 chr3L 8791275 8791289 chr3L 8796691 8796709 I-element 5 5418 4.5 0.5 2.5 1.4 5434 chr3L 8791275 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796709 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-642 648 chr3L 8861526 8861554 chr3L 8861617 8861645 5 90 0.0 0.0 0.0 5.0 119 chr3L 8861526 intron dally + chr3L 8861586 intron dally + chr3L 8861645 intron dally + chr3L_5_8860001 chr3L_8860001 RAL-642 649 chr3L 9003948 9003978 chr3L 9004033 9004063 5 85 2.0 0.5 1.2 2.3 115 chr3L 9003948 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-642 650 chr3L 9013691 9013691 chr3L 18417066 18417066 4 9403375 20.0 19.0 19.5 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-642 651 chr3L 9076931 9076960 chr3L 9084491 9084513 412 14 7559 3.5 1.5 2.5 4.0 7582 chr3L 9076931 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084513 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-642 652 chr3L 9130566 9130582 chr3L 9134325 9134343 412 5 3760 5.0 4.5 4.8 0.9 3777 chr3L 9130566 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-642 653 chr3L 9219240 9219274 chr3L 9219912 9219946 jockey 10 667 6.0 3.5 4.8 1.7 706 chr3L 9219240 intergenic not near genes chr3L 9219593 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-642 654 chr3L 9270619 9270651 chr3L 9278372 9278388 roo 9 7751 3.0 1.0 2.0 3.0 7769 chr3L 9270619 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278388 exon GluRIB + chr3L_9_9270001 chr3L_9270001 RAL-642 655 chr3L 9510912 9510958 chr3L 9511004 9511037 14 81 0.0 2.0 1.0 7.0 125 chr3L 9510912 intron RpS9 - chr3L 9510974 intron RpS9 - chr3L 9511037 intron RpS9 - chr3L_14_9510001 chr3L_9510001 RAL-642 656 chr3L 9575911 9575938 chr3L 9580989 9581015 jockey 9 5077 8.5 2.0 5.2 1.5 5104 chr3L 9575911 intron CG42673 + chr3L 9578463 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_9_9575001 chr3L_9575001 RAL-642 657 chr3L 9589350 9589357 chr3L 9589501 9589511 4 152 4.0 2.5 3.2 1.0 161 chr3L 9589350 intron CG42673 + chr3L 9589430 intron CG42673 + chr3L 9589511 intron CG42673 + chr3L_4_9585001 chr3L_9585001 RAL-642 658 chr3L 9797979 9797992 chr3L 9798056 9798071 4 78 0.5 2.5 1.5 1.6 92 chr3L 9797979 intergenic Zasp67 -,Ilp1 + chr3L 9798025 intergenic Zasp67 -,Ilp1 + chr3L 9798071 intergenic Ilp1 +,Zasp67 - chr3L_4_9795001 chr3L_9795001 RAL-642 659 chr3L 9907876 9907894 chr3L 9907953 9907971 4 72 5.5 6.5 6.0 0.6 95 chr3L 9907876 intergenic CG34356 + chr3L 9907924 intergenic CG34356 + chr3L 9907971 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-642 660 chr3L 9918884 9918911 chr3L 9918978 9919006 7 92 5.0 0.5 2.8 1.8 122 chr3L 9918884 intron CG34356 + chr3L 9918945 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_7_9915001 chr3L_9915001 RAL-642 661 chr3L 10003151 10003179 chr3L 10003248 10003276 4 95 2.0 3.0 2.5 1.1 125 chr3L 10003151 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-642 662 chr3L 10078123 10078138 chr3L 10078318 10078344 10 206 1.5 2.0 1.8 3.6 221 chr3L 10078123 intron dpr6 + chr3L 10078234 intron dpr6 + chr3L 10078344 intron dpr6 + chr3L_10_10075001 chr3L_10075001 RAL-642 663 chr3L 10161432 10161460 chr3L 10161511 10161539 8 76 0.5 6.0 3.2 1.9 107 chr3L 10161432 intron dpr10 - chr3L 10161486 intron dpr10 - chr3L 10161539 intron dpr10 - chr3L_8_10160001 chr3L_10160001 RAL-642 664 chr3L 10199288 10199316 chr3L 10199713 10199739 13 425 1.0 4.5 2.8 3.4 451 chr3L 10199288 intron ect - chr3L 10199514 intron ect - chr3L 10199739 intron ect - chr3L_13_10195001 chr3L_10195001 RAL-642 665 chr3L 10214730 10214825 chr3L 10214816 10214925 4 94 0.0 0.0 0.0 4.0 195 chr3L 10214730 intergenic not near genes chr3L 10214828 intergenic not near genes chr3L 10214925 intergenic not near genes chr3L_4_10210001 chr3L_10210001 RAL-642 666 chr3L 10298677 10298701 chr3L 10298764 10298788 5 87 0.0 0.5 0.2 4.2 111 chr3L 10298677 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-642 667 chr3L 10308737 10308763 chr3L 10308814 10308840 7 76 3.5 2.0 2.8 1.8 103 chr3L 10308737 intergenic not near genes chr3L 10308788 intergenic not near genes chr3L 10308840 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-642 668 chr3L 10414967 10414978 chr3L 10417310 10417334 Doc 6 2355 0.0 1.5 0.8 3.3 2367 chr3L 10414967 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417334 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-642 669 chr3L 10417563 10417600 chr3L 10417643 10417671 7 75 2.5 3.5 3.0 1.8 108 chr3L 10417563 intergenic not near genes chr3L 10417617 intergenic not near genes chr3L 10417671 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-642 670 chr3L 10646308 10646319 chr3L 10646514 10646529 5 209 2.0 1.0 1.5 2.0 221 chr3L 10646308 intron CG32066 - chr3L 10646418 intron CG32066 - chr3L 10646529 intron CG32066 - chr3L_5_10645001 chr3L_10645001 RAL-642 671 chr3L 10658078 10658101 chr3L 10658154 10658178 5 77 0.0 1.5 0.8 2.8 100 chr3L 10658078 intron CG32066 - chr3L 10658128 intron CG32066 - chr3L 10658178 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-642 672 chr3L 10762831 10762837 chr3L 10762915 10762918 5 83 9.0 2.0 5.5 0.8 87 chr3L 10762831 intergenic not near genes chr3L 10762874 intergenic not near genes chr3L 10762918 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-642 673 chr3L 10889226 10889261 chr3L 10889306 10889341 11 79 3.5 1.0 2.2 3.4 115 chr3L 10889226 intergenic not near genes chr3L 10889284 intergenic not near genes chr3L 10889341 intergenic not near genes chr3L_11_10885001 chr3L_10885001 RAL-642 674 chr3L 10957009 10957034 chr3L 10957080 10957109 6 74 1.5 2.0 1.8 2.1 100 chr3L 10957009 intergenic not near genes chr3L 10957059 intergenic not near genes chr3L 10957109 intergenic not near genes chr3L_6_10955001 chr3L_10955001 RAL-642 675 chr3L 11087078 11087089 chr3L 11088867 11088874 S-element 8 1788 1.5 4.0 2.8 2.1 1796 chr3L 11087078 intron JIL-1 - chr3L 11087976 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-642 676 chr3L 11105291 11105327 chr3L 11107001 11107037 X-element 6 1710 2.0 1.0 1.5 2.4 1746 chr3L 11105291 intergenic not near genes chr3L 11106164 intergenic not near genes chr3L 11107037 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-642 677 chr3L 11135529 11135795 chr3L 11135759 11135880 7 104 0.0 0.0 0.0 7.0 351 chr3L 11135529 intergenic CG14143 + chr3L 11135704 intergenic CG14143 +,CG32082 + chr3L 11135880 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-642 678 chr3L 11264462 11264496 chr3L 11271414 11271446 17.6 4 6951 3.5 1.5 2.5 1.1 6984 chr3L 11264462 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271446 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-642 679 chr3L 11329687 11329726 chr3L 11332892 11332929 jockey 4 3204 4.5 2.0 3.2 1.0 3242 chr3L 11329687 intergenic not near genes chr3L 11331308 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-642 680 chr3L 11465778 11465783 chr3L 11465857 11465863 4 79 1.0 3.5 2.2 1.2 85 chr3L 11465778 5` UTR CG6140 - chr3L 11465820 5` UTR CG6140 - chr3L 11465863 5` UTR CG6140 - chr3L_4_11465001 chr3L_11465001 RAL-642 681 chr3L 11564788 11564813 chr3L 11572413 11572438 412 7 7621 2.0 3.0 2.5 2.0 7650 chr3L 11564788 exon CG33267 + chr3L 11568613 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-642 682 chr3L 11579558 11579583 chr3L 11579664 11579686 6 104 1.5 0.5 1.0 3.0 128 chr3L 11579558 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579686 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-642 683 chr3L 11587923 11587953 chr3L 11587999 11588029 6 75 0.5 1.0 0.8 3.3 106 chr3L 11587923 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588029 intergenic rt - chr3L_6_11585001 chr3L_11585001 RAL-642 684 chr3L 11678095 11678119 chr3L 11678181 11678206 4 87 0.0 0.5 0.2 3.3 111 chr3L 11678095 intron CG32085 - chr3L 11678150 intron CG32085 - chr3L 11678206 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-642 685 chr3L 11723092 11723116 chr3L 11727887 11727909 Doc 6 4794 0.0 1.5 0.8 3.3 4817 chr3L 11723092 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-642 686 chr3L 11729677 11729704 chr3L 11729753 11729780 8 76 1.5 2.0 1.8 2.9 103 chr3L 11729677 exon CG32088 + chr3L 11729728 intron CG32088 + chr3L 11729780 exon CG32088 + chr3L_8_11725001 chr3L_11725001 RAL-642 687 chr3L 11744022 11744038 chr3L 11744130 11744146 4 108 4.0 0.0 2.0 1.3 124 chr3L 11744022 exon CG6024 - chr3L 11744084 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-642 688 chr3L 802565 802566 chr3L 11777678 11777678 4 10975112 7.5 10.5 9.0 0.4 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-642 689 chr3L 11864557 11864583 chr3L 11865850 11865858 pogo 8 1292 3.0 2.0 2.5 2.3 1301 chr3L 11864557 intron CG44837 - chr3L 11865208 intron CG44837 - chr3L 11865858 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-642 690 chr3L 12052710 12052738 chr3L 12052799 12052827 5 88 1.5 0.0 0.8 2.8 117 chr3L 12052710 intron rols - chr3L 12052768 intron rols - chr3L 12052827 intron rols - chr3L_5_12050001 chr3L_12050001 RAL-642 691 chr3L 12089084 12089112 chr3L 12089164 12089192 5 80 0.5 2.5 1.5 2.0 108 chr3L 12089084 3` UTR CG17154 + chr3L 12089138 3` UTR CG17154 + chr3L 12089192 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-642 692 chr3L 12114077 12114087 chr3L 12114162 12114173 4 86 7.5 1.5 4.5 0.7 96 chr3L 12114077 intergenic not near genes chr3L 12114125 intergenic not near genes chr3L 12114173 intergenic not near genes chr3L_4_12110001 chr3L_12110001 RAL-642 693 chr3L 12304093 12304111 chr3L 12304168 12304185 8 74 1.5 4.5 3.0 2.0 92 chr3L 12304093 intergenic not near genes chr3L 12304139 intergenic not near genes chr3L 12304185 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-642 694 chr3L 12312503 12312511 chr3L 12312574 12312587 4 76 1.5 2.5 2.0 1.3 84 chr3L 12312503 intergenic not near genes chr3L 12312545 intergenic not near genes chr3L 12312587 intergenic not near genes chr3L_4_12310001 chr3L_12310001 RAL-642 695 chr3L 12366246 12366261 chr3L 12367143 12367157 4 896 15.0 15.5 15.2 0.2 911 chr3L 12366246 intergenic not near genes chr3L 12366702 intergenic not near genes chr3L 12367157 intergenic not near genes chr3L_4_12365001 chr3L_12365001 RAL-642 696 chr3L 12412734 12412747 chr3L 12412819 12412824 5 83 5.0 1.0 3.0 1.2 90 chr3L 12412734 intron CG32103 - chr3L 12412779 intron CG32103 - chr3L 12412824 intron CG32103 - chr3L_5_12410001 chr3L_12410001 RAL-642 697 chr3L 12412758 12412922 chr3L 12412818 12413004 4 77 1.5 1.0 1.2 1.8 246 chr3L 12412758 intron CG32103 - chr3L 12412881 intron CG32103 - chr3L 12413004 intron CG32103 - chr3L_4_12410001 chr3L_12410001 RAL-642 698 chr3L 12479421 12479449 chr3L 12479508 12479520 6 83 5.0 0.0 2.5 1.7 99 chr3L 12479421 intron CG10663 - chr3L 12479470 intron CG10663 - chr3L 12479520 intron CG10663 - chr3L_6_12475001 chr3L_12475001 RAL-642 699 chr3L 12578050 12578062 chr3L 12578138 12578150 4 88 1.0 0.5 0.8 2.2 100 chr3L 12578050 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578150 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-642 700 chr3L 12874925 12874950 chr3L 12877217 12877242 jockey 7 2290 2.0 0.5 1.2 3.2 2317 chr3L 12874925 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877242 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-642 701 chr3L 12955436 12955460 chr3L 12955524 12955551 6 90 3.5 1.0 2.2 1.9 115 chr3L 12955436 intergenic not near genes chr3L 12955494 intergenic not near genes chr3L 12955551 intergenic not near genes chr3L_6_12955001 chr3L_12955001 RAL-642 702 chr3L 12957787 12957813 chr3L 12962269 12962295 copia 4 4482 3.5 3.0 3.2 1.0 4508 chr3L 12957787 intergenic not near genes chr3L 12960041 intergenic not near genes chr3L 12962295 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-642 703 chr3L 13001021 13001036 chr3L 13001110 13001125 6 89 1.0 1.0 1.0 3.0 104 chr3L 13001021 intergenic not near genes chr3L 13001073 intergenic not near genes chr3L 13001125 intergenic not near genes chr3L_6_13000001 chr3L_13000001 RAL-642 704 chr3L 13050573 13050578 chr3L 13050652 13050652 4 77 0.5 1.0 0.8 2.2 79 chr3L 13050573 intergenic not near genes chr3L 13050612 intergenic not near genes chr3L 13050652 intergenic not near genes chr3L_4_13050001 chr3L_13050001 RAL-642 705 chr3L 13080028 13080052 chr3L 13080122 13080147 15 95 4.0 2.5 3.2 3.6 119 chr3L 13080028 intergenic not near genes chr3L 13080088 intergenic not near genes chr3L 13080147 intergenic not near genes chr3L_15_13080001 chr3L_13080001 RAL-642 706 chr3L 13320608 13320635 chr3L 13320699 13320724 5 89 4.5 2.5 3.5 1.1 116 chr3L 13320608 intergenic not near genes chr3L 13320666 intergenic not near genes chr3L 13320724 intergenic not near genes chr3L_5_13320001 chr3L_13320001 RAL-642 707 chr3L 13525161 13525167 chr3L 13532957 13532963 roo 5 7796 2.0 4.5 3.2 1.2 7802 chr3L 13525161 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532963 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-642 708 chr3L 13525168 13525182 chr3L 13532954 13532977 roo 7 7792 2.0 4.0 3.0 1.8 7809 chr3L 13525168 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532977 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-642 709 chr3L 13610212 13610226 chr3L 13610309 13610323 5 97 2.5 3.5 3.0 1.2 111 chr3L 13610212 intron bru-3 - chr3L 13610268 intron bru-3 - chr3L 13610323 intron bru-3 - chr3L_5_13610001 chr3L_13610001 RAL-642 710 chr3L 13646655 13646684 chr3L 13646742 13646754 5 80 2.0 2.0 2.0 1.7 99 chr3L 13646655 intron bru-3 - chr3L 13646704 intron bru-3 - chr3L 13646754 intron bru-3 - chr3L_5_13645001 chr3L_13645001 RAL-642 711 chr3L 13804544 13804575 chr3L 13822830 13822833 roo 6 18278 2.5 2.0 2.2 1.9 18289 chr3L 13804544 intergenic not near genes chr3L 13813688 intergenic not near genes chr3L 13822833 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-642 712 chr3L 13833981 13833994 chr3L 13834093 13834102 5 110 5.5 2.0 3.8 1.0 121 chr3L 13833981 intergenic not near genes chr3L 13834042 intergenic not near genes chr3L 13834102 intergenic not near genes chr3L_5_13830001 chr3L_13830001 RAL-642 713 chr3L 13838941 13838951 chr3L 13839160 13839170 4 219 3.5 3.0 3.2 1.0 229 chr3L 13838941 intergenic not near genes chr3L 13839056 intergenic not near genes chr3L 13839170 intergenic not near genes chr3L_4_13835001 chr3L_13835001 RAL-642 714 chr3L 13862428 13862443 chr3L 13862789 13862790 8 360 1.0 3.5 2.2 2.5 362 chr3L 13862428 intron CG8745 - chr3L 13862609 intron CG8745 - chr3L 13862790 intron CG8745 - chr3L_8_13860001 chr3L_13860001 RAL-642 715 chr3L 13920421 13920432 chr3L 13920501 13920512 4 79 1.0 1.0 1.0 2.0 91 chr3L 13920421 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920512 intron Rgl - chr3L_4_13920001 chr3L_13920001 RAL-642 716 chr3L 14036676 14036694 chr3L 14036769 14036787 4 93 2.5 1.5 2.0 1.3 111 chr3L 14036676 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036732 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036787 3` UTR pncr014:3L - chr3L_4_14035001 chr3L_14035001 RAL-642 717 chr3L 14118952 14118970 chr3L 14119043 14119063 7 88 4.0 4.0 4.0 1.4 111 chr3L 14118952 intron Sox21b - chr3L 14119008 intron Sox21b - chr3L 14119063 intron Sox21b - chr3L_7_14115001 chr3L_14115001 RAL-642 718 chr3L 14222816 14222827 chr3L 14222907 14222919 4 91 2.5 2.5 2.5 1.1 103 chr3L 14222816 intron nuf + chr3L 14222868 intron nuf + chr3L 14222919 intron nuf + chr3L_4_14220001 chr3L_14220001 RAL-642 719 chr3L 14245567 14245592 chr3L 14245661 14245684 1360 12 91 3.5 2.5 3.0 3.0 117 chr3L 14245567 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_12_14245001 chr3L_14245001 RAL-642 720 chr3L 14356518 14356553 chr3L 14356598 14356632 7 80 1.5 3.5 2.5 2.0 114 chr3L 14356518 intron fz + chr3L 14356575 intron fz + chr3L 14356632 intron fz + chr3L_7_14355001 chr3L_14355001 RAL-642 721 chr3L 14439220 14439231 chr3L 14439377 14439394 4 161 1.5 1.0 1.2 1.8 174 chr3L 14439220 intron bbg - chr3L 14439307 intron bbg - chr3L 14439394 intron bbg - chr3L_4_14435001 chr3L_14435001 RAL-642 722 chr3L 14584160 14584183 chr3L 14584245 14584270 4 86 0.0 1.5 0.8 2.2 110 chr3L 14584160 intron HGTX - chr3L 14584215 intron HGTX - chr3L 14584270 intron HGTX - chr3L_4_14580001 chr3L_14580001 RAL-642 723 chr3L 14635705 14635731 chr3L 14635784 14635810 5 79 4.5 0.5 2.5 1.4 105 chr3L 14635705 intron dlp + chr3L 14635758 intron dlp + chr3L 14635810 intron dlp + chr3L_5_14635001 chr3L_14635001 RAL-642 724 chr3L 14660879 14660882 chr3L 14660947 14660976 6 86 1.0 4.0 2.5 1.7 97 chr3L 14660879 intron dlp + chr3L 14660928 intron dlp + chr3L 14660976 intron dlp + chr3L_6_14660001 chr3L_14660001 RAL-642 725 chr3L 14693317 14693325 chr3L 14693580 14693606 7 279 1.0 4.0 2.5 2.0 289 chr3L 14693317 intron ome + chr3L 14693462 intron ome + chr3L 14693606 intron ome + chr3L_7_14690001 chr3L_14690001 RAL-642 726 chr3L 14721186 14721205 chr3L 14723029 14723048 Rt1c 7 1841 5.5 3.5 4.5 1.3 1862 chr3L 14721186 intron ome + chr3L 14722117 intron ome + chr3L 14723048 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-642 727 chr3L 14892456 14892474 chr3L 14892532 14892551 4 76 1.5 1.0 1.2 1.8 95 chr3L 14892456 intergenic not near genes chr3L 14892504 intergenic not near genes chr3L 14892551 intergenic not near genes chr3L_4_14890001 chr3L_14890001 RAL-642 728 chr3L 14892651 14892672 chr3L 14892907 14892928 7 256 6.5 0.0 3.2 1.7 277 chr3L 14892651 intergenic not near genes chr3L 14892790 intergenic not near genes chr3L 14892928 intergenic not near genes chr3L_7_14890001 chr3L_14890001 RAL-642 729 chr3L 14896223 14896249 chr3L 14896374 14896405 7 155 1.5 4.0 2.8 1.8 182 chr3L 14896223 intergenic not near genes chr3L 14896314 intergenic not near genes chr3L 14896405 intergenic not near genes chr3L_7_14895001 chr3L_14895001 RAL-642 730 chr3L 14922109 14922124 chr3L 14922210 14922232 5 105 3.5 1.0 2.2 1.6 123 chr3L 14922109 intron DCX-EMAP + chr3L 14922170 intron DCX-EMAP + chr3L 14922232 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-642 731 chr3L 15006866 15006883 chr3L 15006949 15006966 6 82 3.0 0.5 1.8 2.1 100 chr3L 15006866 intron Reck - chr3L 15006916 intron Reck - chr3L 15006966 intron Reck - chr3L_6_15005001 chr3L_15005001 RAL-642 732 chr3L 15085057 15085085 chr3L 15086215 15086248 1360 4 1162 0.0 2.0 1.0 2.0 1191 chr3L 15085057 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086248 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-642 733 chr3L 15233732 15233749 chr3L 15233816 15233832 5 84 2.5 1.0 1.8 1.8 100 chr3L 15233732 intergenic not near genes chr3L 15233782 intergenic not near genes chr3L 15233832 intergenic not near genes chr3L_5_15230001 chr3L_15230001 RAL-642 734 chr3L 15384955 15384989 chr3L 15385083 15385111 11 127 1.5 0.5 1.0 5.5 156 chr3L 15384955 intergenic not near genes chr3L 15385033 intergenic not near genes chr3L 15385111 intergenic not near genes chr3L_11_15385001 chr3L_15385001 RAL-642 735 chr3L 15615930 15615942 chr3L 15616026 15616035 5 95 1.5 1.0 1.2 2.3 105 chr3L 15615930 intron comm3 - chr3L 15615982 intron comm3 - chr3L 15616035 intron comm3 - chr3L_5_15615001 chr3L_15615001 RAL-642 736 chr3L 15643597 15643614 chr3L 15643884 15643900 4 286 3.5 6.0 4.8 0.7 303 chr3L 15643597 intron comm3 - chr3L 15643748 intron comm3 - chr3L 15643900 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-642 737 chr3L 15737379 15737399 chr3L 15737469 15737489 6 90 1.0 0.5 0.8 3.3 110 chr3L 15737379 intergenic not near genes chr3L 15737434 intergenic not near genes chr3L 15737489 intergenic not near genes chr3L_6_15735001 chr3L_15735001 RAL-642 738 chr3L 15754589 15754609 chr3L 15754672 15754692 4 80 0.0 1.5 0.8 2.2 103 chr3L 15754589 intergenic not near genes chr3L 15754640 intergenic not near genes chr3L 15754692 intergenic not near genes chr3L_4_15750001 chr3L_15750001 RAL-642 739 chr3L 15883191 15883223 chr3L 15883484 15883516 5 289 1.0 0.0 0.5 3.3 325 chr3L 15883191 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883516 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-642 740 chr3L 15899231 15899258 chr3L 15899792 15899810 jockey 6 555 1.5 2.5 2.0 2.0 579 chr3L 15899231 intergenic pHCl - chr3L 15899520 intergenic pHCl - chr3L 15899810 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-642 741 chr3L 16162603 16162627 chr3L 16162683 16162711 7 83 4.0 4.5 4.2 1.3 108 chr3L 16162603 intron CG5151 - chr3L 16162657 intron CG5151 - chr3L 16162711 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-642 742 chr3L 16184116 16184139 chr3L 16188931 16188957 X-element 5 4818 0.5 3.0 1.8 1.8 4841 chr3L 16184116 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-642 743 chr3L 16279086 16279105 chr3L 16279167 16279186 5 81 1.0 0.5 0.8 2.8 100 chr3L 16279086 intron CG13050 - chr3L 16279136 intron CG13050 - chr3L 16279186 intron CG13050 - chr3L_5_16275001 chr3L_16275001 RAL-642 744 chr3L 16360885 16360914 chr3L 16360961 16360991 17 76 3.0 1.0 2.0 5.7 106 chr3L 16360885 intron CG45057 - chr3L 16360938 intron CG45057 - chr3L 16360991 intron CG45057 - chr3L_17_16360001 chr3L_16360001 RAL-642 745 chr3L 16457907 16457926 chr3L 16457983 16458000 6 75 2.5 4.0 3.2 1.4 93 chr3L 16457907 intron CG33158 + chr3L 16457954 intron CG33158 + chr3L 16458000 intron CG33158 + chr3L_6_16455001 chr3L_16455001 RAL-642 746 chr3L 16493991 16494013 chr3L 16494508 16494530 jockey 7 516 7.0 6.0 6.5 0.9 539 chr3L 16493991 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494260 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494530 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-642 747 chr3L 16642804 16642836 chr3L 16642888 16642916 5 81 0.0 1.0 0.5 3.3 112 chr3L 16642804 intron Abl - chr3L 16642860 intron Abl - chr3L 16642916 intron Abl - chr3L_5_16640001 chr3L_16640001 RAL-642 748 chr3L 16652690 16652712 chr3L 16652769 16652791 9 78 1.5 3.5 2.5 2.6 101 chr3L 16652690 intron Baldspot - chr3L 16652740 intron Baldspot - chr3L 16652791 intron Baldspot - chr3L_9_16650001 chr3L_16650001 RAL-642 749 chr3L 16888813 16888841 chr3L 16889103 16889128 7 289 2.5 3.0 2.8 1.8 315 chr3L 16888813 intron Lmpt + chr3L 16888970 intron Lmpt + chr3L 16889128 intron Lmpt + chr3L_7_16885001 chr3L_16885001 RAL-642 750 chr3L 16891213 16891217 chr3L 16891293 16891297 4 80 3.5 5.0 4.2 0.8 84 chr3L 16891213 intron Lmpt + chr3L 16891255 intron Lmpt + chr3L 16891297 intron Lmpt + chr3L_4_16890001 chr3L_16890001 RAL-642 751 chr3L 16891218 16891225 chr3L 16891286 16891295 5 71 2.5 4.5 3.5 1.1 77 chr3L 16891218 intron Lmpt + chr3L 16891256 intron Lmpt + chr3L 16891295 intron Lmpt + chr3L_5_16890001 chr3L_16890001 RAL-642 752 chr3L 16945729 16945759 chr3L 16954879 16954885 roo 8 9142 2.5 2.5 2.5 2.3 9156 chr3L 16945729 exon Obp73a + chr3L 16950307 intergenic not near genes chr3L 16954885 5` UTR Nc73EF + chr3L_8_16950001 chr3L_16950001 RAL-642 753 chr3L 17026790 17026824 chr3L 17026871 17026892 8 77 0.5 0.5 0.5 5.3 102 chr3L 17026790 exon Fit2 + chr3L 17026841 3` UTR Fit2 + chr3L 17026892 3` UTR Fit2 + chr3L_8_17025001 chr3L_17025001 RAL-642 754 chr3L 17120655 17120939 chr3L 17120731 17121009 9 75 2.0 1.0 1.5 3.6 354 chr3L 17120655 intron Rbp6 - chr3L 17120832 intron Rbp6 - chr3L 17121009 intron Rbp6 - chr3L_9_17120001 chr3L_17120001 RAL-642 755 chr3L 17126023 17126035 chr3L 17126238 17126250 4 215 2.5 2.5 2.5 1.1 227 chr3L 17126023 intron Rbp6 - chr3L 17126136 intron Rbp6 - chr3L 17126250 intron Rbp6 - chr3L_4_17125001 chr3L_17125001 RAL-642 756 chr3L 17149164 17149185 chr3L 17149245 17149266 4 81 3.5 0.0 1.8 1.4 102 chr3L 17149164 intron Rbp6 - chr3L 17149215 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-642 757 chr3L 17272241 17272263 chr3L 17272374 17272396 6 132 1.0 2.0 1.5 2.4 155 chr3L 17272241 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272396 intergenic not near genes chr3L_6_17270001 chr3L_17270001 RAL-642 758 chr3L 17295221 17295250 chr3L 17295297 17295323 7 73 3.5 4.0 3.8 1.5 102 chr3L 17295221 intergenic not near genes chr3L 17295272 intergenic not near genes chr3L 17295323 intergenic not near genes chr3L_7_17295001 chr3L_17295001 RAL-642 759 chr3L 17495234 17495253 chr3L 17495348 17495368 5 112 6.0 1.5 3.8 1.0 134 chr3L 17495234 intron,exon Oatp74D +,edin + chr3L 17495301 intron Oatp74D + chr3L 17495368 intron Oatp74D + chr3L_5_17495001 chr3L_17495001 RAL-642 760 chr3L 17510746 17510764 chr3L 17510830 17510848 5 83 2.0 3.5 2.8 1.3 102 chr3L 17510746 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-642 761 chr3L 17516988 17517005 chr3L 17524544 17524560 412 8 7555 4.0 4.5 4.2 1.5 7572 chr3L 17516988 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524560 3` UTR CG7564 + chr3L_8_17520001 chr3L_17520001 RAL-642 762 chr3L 17535821 17535847 chr3L 17535928 17535956 10 112 2.0 2.0 2.0 3.3 135 chr3L 17535821 intron Nedd4 + chr3L 17535888 intron Nedd4 + chr3L 17535956 intron Nedd4 + chr3L_10_17535001 chr3L_17535001 RAL-642 763 chr3L 17592798 17592817 chr3L 17592889 17592908 4 91 0.5 0.5 0.5 2.7 110 chr3L 17592798 intron Eip74EF - chr3L 17592853 intron Eip74EF - chr3L 17592908 intron Eip74EF - chr3L_4_17590001 chr3L_17590001 RAL-642 764 chr3L 18000680 18000698 chr3L 18000756 18000771 4 76 2.5 4.0 3.2 1.0 91 chr3L 18000680 intron Eip75B - chr3L 18000726 intron Eip75B - chr3L 18000771 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-642 765 chr3L 18042243 18042276 chr3L 18042321 18042352 5 78 2.0 0.0 1.0 2.5 109 chr3L 18042243 intron Eip75B - chr3L 18042298 intron Eip75B - chr3L 18042352 intron Eip75B - chr3L_5_18040001 chr3L_18040001 RAL-642 766 chr3L 18047715 18047738 chr3L 18056772 18056794 roo 6 9056 0.5 1.0 0.8 3.3 9079 chr3L 18047715 intron Eip75B - chr3L 18052254 intron Eip75B - chr3L 18056794 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-642 767 chr3L 18079632 18079661 chr3L 18079708 18079737 4 76 3.0 2.5 2.8 1.1 105 chr3L 18079632 intergenic not near genes chr3L 18079684 intergenic not near genes chr3L 18079737 intergenic not near genes chr3L_4_18075001 chr3L_18075001 RAL-642 768 chr3L 18106278 18106283 chr3L 18106391 18106402 4 118 2.0 0.0 1.0 2.0 124 chr3L 18106278 intergenic CG13698 -,mRpS26 + chr3L 18106340 intergenic CG13698 -,mRpS26 + chr3L 18106402 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-642 769 chr3L 18119657 18119672 chr3L 18119755 18119770 4 98 0.5 3.0 1.8 1.4 113 chr3L 18119657 intron CG7341 + chr3L 18119714 intron CG7341 + chr3L 18119770 intron CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-642 770 chr3L 18154085 18154105 chr3L 18154168 18154189 5 84 1.0 3.0 2.0 1.7 104 chr3L 18154085 intergenic CG7330 + chr3L 18154137 intergenic CG7330 + chr3L 18154189 intergenic CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-642 771 chr3L 18221106 18221126 chr3L 18221187 18221205 4 80 0.0 0.0 0.0 4.0 99 chr3L 18221106 intergenic not near genes chr3L 18221156 intergenic not near genes chr3L 18221205 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-642 772 chr3L 18223167 18223183 chr3L 18223250 18223260 5 81 1.0 0.5 0.8 2.8 93 chr3L 18223167 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223260 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-642 773 chr3L 18248958 18248970 chr3L 18249056 18249068 5 98 2.0 2.0 2.0 1.7 110 chr3L 18248958 intergenic not near genes chr3L 18249013 intergenic not near genes chr3L 18249068 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-642 774 chr3L 18406148 18406154 chr3L 18406224 18406230 5 76 0.0 3.0 1.5 2.0 82 chr3L 18406148 intergenic not near genes chr3L 18406189 intergenic not near genes chr3L 18406230 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-642 775 chr3L 18456284 18456301 chr3L 18456372 18456389 5 88 2.0 1.5 1.8 1.8 105 chr3L 18456284 intergenic CR44670 - chr3L 18456336 intergenic CR44670 - chr3L 18456389 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-642 776 chr3L 18464489 18464515 chr3L 18464572 18464601 6 83 2.5 4.0 3.2 1.4 112 chr3L 18464489 intergenic not near genes chr3L 18464545 intergenic not near genes chr3L 18464601 intergenic not near genes chr3L_6_18460001 chr3L_18460001 RAL-642 777 chr3L 18558822 18558833 chr3L 18558972 18558984 5 149 0.5 0.0 0.2 4.2 162 chr3L 18558822 intergenic not near genes chr3L 18558903 intergenic not near genes chr3L 18558984 intergenic not near genes chr3L_5_18555001 chr3L_18555001 RAL-642 778 chr3L 18677887 18677919 chr3L 18677982 18678003 7 92 2.5 3.5 3.0 1.8 116 chr3L 18677887 intergenic GNBP1 + chr3L 18677945 intergenic GNBP1 + chr3L 18678003 intergenic GNBP1 + chr3L_7_18675001 chr3L_18675001 RAL-642 779 chr3L 18695956 18695986 chr3L 18696074 18696096 7 118 4.0 7.0 5.5 1.1 140 chr3L 18695956 intergenic CG6893 +,Dic4 - chr3L 18696026 intergenic Dic4 -,CG6893 + chr3L 18696096 intergenic Dic4 -,CG6893 + chr3L_7_18695001 chr3L_18695001 RAL-642 780 chr3L 18721771 18721804 chr3L 18721861 18721895 10 90 1.5 1.0 1.2 4.5 124 chr3L 18721771 intergenic CG12477 - chr3L 18721833 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-642 781 chr3L 18772407 18772439 chr3L 18781088 18781120 roo 11 8679 2.5 4.0 3.2 2.6 8713 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_11_18775001 chr3L_18775001 RAL-642 782 chr3L 18887301 18887317 chr3L 18887407 18887423 5 105 1.0 0.0 0.5 3.3 122 chr3L 18887301 intron CG3961 - chr3L 18887362 intron CG3961 - chr3L 18887423 intron CG3961 - chr3L_5_18885001 chr3L_18885001 RAL-642 783 chr3L 18888258 18888266 chr3L 18888343 18888349 4 84 4.0 1.5 2.8 1.1 91 chr3L 18888258 intron CG3961 - chr3L 18888304 intron CG3961 - chr3L 18888349 intron CG3961 - chr3L_4_18885001 chr3L_18885001 RAL-642 784 chr3L 18924482 18924509 chr3L 18924557 18924585 5 76 0.0 2.5 1.2 2.3 103 chr3L 18924482 intron CG32204 - chr3L 18924534 intron CG32204 - chr3L 18924585 intron CG32204 - chr3L_5_18920001 chr3L_18920001 RAL-642 785 chr3L 18948890 18948907 chr3L 18949116 18949133 5 225 0.5 1.0 0.8 2.8 243 chr3L 18948890 intergenic not near genes chr3L 18949012 intergenic not near genes chr3L 18949133 intergenic not near genes chr3L_5_18945001 chr3L_18945001 RAL-642 786 chr3L 19008840 19008870 chr3L 19009176 19009208 jockey 4 337 1.0 2.5 1.8 1.4 368 chr3L 19008840 intron nkd - chr3L 19009024 intron nkd - chr3L 19009208 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-642 787 chr3L 19082035 19082071 chr3L 19082137 19082147 8 99 2.0 2.5 2.2 2.5 112 chr3L 19082035 intron Mkp3 - chr3L 19082091 intron Mkp3 - chr3L 19082147 intron Mkp3 - chr3L_8_19080001 chr3L_19080001 RAL-642 788 chr3L 19115637 19115674 chr3L 19115815 19115850 BS 4 177 5.0 2.0 3.5 0.9 213 chr3L 19115637 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115850 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-642 789 chr3L 19117045 19117070 chr3L 19124492 19124517 mdg1 6 7446 6.5 3.0 4.8 1.0 7472 chr3L 19117045 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124517 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-642 790 chr3L 19138554 19138588 chr3L 19138635 19138664 8 76 1.0 1.0 1.0 4.0 110 chr3L 19138554 intron CG14082 - chr3L 19138609 intron CG14082 - chr3L 19138664 intron CG14082 - chr3L_8_19135001 chr3L_19135001 RAL-642 791 chr3L 19186956 19186977 chr3L 19187052 19187072 5 96 0.5 2.0 1.2 2.3 116 chr3L 19186956 intron fz2 - chr3L 19187014 intron fz2 - chr3L 19187072 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-642 792 chr3L 19208058 19208089 chr3L 19209432 19209457 Doc 8 1372 2.5 3.0 2.8 2.1 1399 chr3L 19208058 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209457 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-642 793 chr3L 19263238 19263263 chr3L 19263399 19263424 7 158 4.0 1.0 2.5 2.0 186 chr3L 19263238 intron Max - chr3L 19263331 intron Max - chr3L 19263424 exon Max - chr3L_7_19260001 chr3L_19260001 RAL-642 794 chr3L 19274189 19274211 chr3L 19274265 19274289 4 78 1.0 3.5 2.2 1.2 100 chr3L 19274189 intergenic CG14085 + chr3L 19274239 intergenic CG14085 + chr3L 19274289 intergenic CG14085 + chr3L_4_19270001 chr3L_19270001 RAL-642 795 chr3L 19462043 19462220 chr3L 19462157 19462358 12 139 1.5 4.0 2.8 3.2 315 chr3L 19462043 intergenic not near genes chr3L 19462200 intergenic not near genes chr3L 19462358 intergenic not near genes chr3L_12_19460001 chr3L_19460001 RAL-642 796 chr3L 19527933 19527956 chr3L 19528012 19528034 7 78 0.5 3.5 2.0 2.3 101 chr3L 19527933 intergenic not near genes chr3L 19527984 intergenic not near genes chr3L 19528034 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-642 797 chr3L 19582148 19582184 chr3L 19582405 19582441 8 253 4.0 1.5 2.8 2.1 293 chr3L 19582148 intron Shal - chr3L 19582294 intron Shal - chr3L 19582441 intron Shal - chr3L_8_19580001 chr3L_19580001 RAL-642 798 chr3L 19848527 19848534 chr3L 19857698 19857724 roo 4 9184 2.0 3.5 2.8 1.1 9197 chr3L 19848527 intron Papss + chr3L 19853126 intron Papss + chr3L 19857724 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-642 799 chr3L 19861823 19861853 chr3L 19863611 19863641 S-element 4 1788 2.5 1.5 2.0 1.3 1818 chr3L 19861823 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-642 800 chr3L 19961259 19961383 chr3L 19961336 19961464 16 78 0.5 0.5 0.5 10.7 205 chr3L 19961259 intron Ac76E + chr3L 19961362 intron Ac76E + chr3L 19961464 intron Ac76E + chr3L_16_19960001 chr3L_19960001 RAL-642 801 chr3L 19981204 19981227 chr3L 19981284 19981307 6 80 2.0 0.5 1.2 2.7 103 chr3L 19981204 intergenic CG17732 + chr3L 19981256 intergenic CG17732 + chr3L 19981307 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-642 802 chr3L 20056270 20056288 chr3L 20056359 20056378 8 89 2.5 1.0 1.8 2.9 108 chr3L 20056270 intergenic not near genes chr3L 20056324 intergenic not near genes chr3L 20056378 intergenic not near genes chr3L_8_20055001 chr3L_20055001 RAL-642 803 chr3L 20257337 20257363 chr3L 20258457 20258483 pogo 7 1120 0.5 2.0 1.2 3.2 1146 chr3L 20257337 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258483 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-642 804 chr3L 20447706 20447708 chr3L 20447776 20447787 4 75 3.0 1.0 2.0 1.3 81 chr3L 20447706 intron CG5910 + chr3L 20447746 intron CG5910 + chr3L 20447787 intron CG5910 + chr3L_4_20445001 chr3L_20445001 RAL-642 805 chr3L 20476753 20476760 chr3L 20484352 20484359 springer 4 7599 2.0 2.0 2.0 1.3 7606 chr3L 20476753 3` UTR isoQC + chr3L 20480556 intergenic not near genes chr3L 20484359 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-642 806 chr3L 20852956 20852970 chr3L 20853258 20853271 INE-1 4 302 1.5 0.5 1.0 2.0 315 chr3L 20852956 intron CG32432 - chr3L 20853114 intron CG32432 - chr3L 20853271 intron CG32432 - chr3L_4_20850001 chr3L_20850001 RAL-642 807 chr3L 21014932 21014947 chr3L 21023395 21023427 Tirant 5 8471 3.5 1.0 2.2 1.6 8495 chr3L 21014932 intron skd - chr3L 21019180 intron skd - chr3L 21023427 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-642 808 chr3L 21082210 21082237 chr3L 21082288 21082315 6 78 0.0 2.0 1.0 3.0 105 chr3L 21082210 intron ko - chr3L 21082262 intron ko - chr3L 21082315 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-642 809 chr3L 21151870 21151896 chr3L 21156954 21156980 flea 5 5084 1.5 1.5 1.5 2.0 5110 chr3L 21151870 intron Ac78C - chr3L 21154425 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-642 810 chr3L 21160964 21160986 chr3L 21161060 21161082 6 96 2.5 4.0 3.2 1.4 118 chr3L 21160964 5` UTR Ac78C - chr3L 21161023 intron Ac78C - chr3L 21161082 intron Ac78C - chr3L_6_21160001 chr3L_21160001 RAL-642 811 chr3L 21243748 21243767 chr3L 21251311 21251330 412 5 7563 1.0 4.0 2.5 1.4 7582 chr3L 21243748 intron Eip78C + chr3L 21247539 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-642 812 chr3L 21301732 21301762 chr3L 21301818 21301848 10 86 5.0 0.0 2.5 2.9 116 chr3L 21301732 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301848 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_10_21300001 chr3L_21300001 RAL-642 813 chr3L 21406993 21407028 chr3L 21407072 21407106 6 78 2.0 1.5 1.8 2.1 113 chr3L 21406993 intron rgn + chr3L 21407050 intron rgn + chr3L 21407106 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-642 814 chr3L 21415152 21415164 chr3L 21415235 21415247 4 83 3.5 5.5 4.5 0.7 95 chr3L 21415152 intron rgn + chr3L 21415200 intron rgn + chr3L 21415247 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-642 815 chr3L 21427855 21427867 chr3L 21427948 21427960 5 93 5.5 4.0 4.8 0.9 105 chr3L 21427855 intron,5` UTR barc -,CG33288 + chr3L 21427908 intron,5` UTR barc -,CG33288 + chr3L 21427960 intron,5` UTR barc -,CG33288 + chr3L_5_21425001 chr3L_21425001 RAL-642 816 chr3L 21427868 21427881 chr3L 21427940 21427972 11 89 3.0 4.0 3.5 2.4 104 chr3L 21427868 intron,5` UTR barc -,CG33288 + chr3L 21427920 intron,5` UTR barc -,CG33288 + chr3L 21427972 intron,5` UTR barc -,CG33288 + chr3L_11_21425001 chr3L_21425001 RAL-642 817 chr3L 21498845 21498869 chr3L 21500470 21500505 1360 6 1631 2.5 3.0 2.8 1.6 1660 chr3L 21498845 intron Glg1 - chr3L 21499675 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-642 818 chr3L 21637323 21637349 chr3L 21637410 21637435 5 87 2.5 2.5 2.5 1.4 112 chr3L 21637323 intron CG32444 + chr3L 21637379 intron CG32444 + chr3L 21637435 intron CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-642 819 chr3L 21671057 21671073 chr3L 21671205 21671218 5 147 3.0 1.5 2.2 1.6 161 chr3L 21671057 intergenic not near genes chr3L 21671138 intergenic not near genes chr3L 21671218 intergenic not near genes chr3L_5_21670001 chr3L_21670001 RAL-642 820 chr3L 21736351 21736368 chr3L 21736552 21736569 4 201 2.5 6.5 4.5 0.7 218 chr3L 21736351 intergenic CR43888 + chr3L 21736460 intergenic CR43888 + chr3L 21736569 intergenic CR43888 + chr3L_4_21735001 chr3L_21735001 RAL-642 821 chr3L 21749320 21749347 chr3L 21754480 21754499 Doc 7 5157 2.0 2.5 2.2 2.2 5179 chr3L 21749320 intron Syn1 - chr3L 21751910 intron Syn1 - chr3L 21754499 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-642 822 chr3L 21799936 21799969 chr3L 21800021 21800039 13 82 1.5 1.0 1.2 5.9 103 chr3L 21799936 intergenic not near genes chr3L 21799988 intergenic not near genes chr3L 21800039 intergenic not near genes chr3L_13_21795001 chr3L_21795001 RAL-642 823 chr3L 21871633 21871658 chr3L 21871713 21871727 4 77 3.5 0.0 1.8 1.4 94 chr3L 21871633 intron mub + chr3L 21871680 intron mub + chr3L 21871727 intron mub + chr3L_4_21870001 chr3L_21870001 RAL-642 824 chr3L 21905350 21905363 chr3L 21905411 21905443 9 74 7.5 4.0 5.8 1.3 93 chr3L 21905350 intron mub + chr3L 21905396 intron mub + chr3L 21905443 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-642 825 chr3L 21950332 21950356 chr3L 21950409 21950432 10 76 3.0 3.5 3.2 2.4 100 chr3L 21950332 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950432 intron CG7448 + chr3L_10_21950001 chr3L_21950001 RAL-642 826 chr3L 22008852 22008878 chr3L 22008929 22008955 7 73 1.5 1.0 1.2 3.2 103 chr3L 22008852 intergenic not near genes chr3L 22008904 intergenic not near genes chr3L 22008955 intergenic not near genes chr3L_7_22005001 chr3L_22005001 RAL-642 827 chr3L 22169457 22169483 chr3L 22169550 22169576 5 92 2.0 3.0 2.5 1.4 119 chr3L 22169457 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169576 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-642 828 chr3L 22196428 22196462 chr3L 22196641 22196673 18 210 3.0 2.5 2.8 4.7 245 chr3L 22196428 intron olf413 + chr3L 22196550 intron olf413 + chr3L 22196673 intron olf413 + chr3L_18_22195001 chr3L_22195001 RAL-642 829 chr3L 22447195 22447229 chr3L 22447286 22447320 5 91 2.5 0.5 1.5 2.0 125 chr3L 22447195 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447320 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-642 830 chr3L 22543729 22543731 chr3L 22543806 22543808 4 77 5.5 2.0 3.8 0.8 79 chr3L 22543729 intergenic not near genes chr3L 22543768 intergenic not near genes chr3L 22543808 intergenic not near genes chr3L_4_22540001 chr3L_22540001 RAL-642 831 chr3L 22543748 22543760 chr3L 22543804 22543836 5 72 2.0 2.0 2.0 1.7 88 chr3L 22543748 intergenic not near genes chr3L 22543792 intergenic not near genes chr3L 22543836 intergenic not near genes chr3L_5_22540001 chr3L_22540001 RAL-642 832 chr3L 22570424 22570447 chr3L 22570568 22570591 8 144 4.0 1.5 2.8 2.1 167 chr3L 22570424 intergenic not near genes chr3L 22570508 intergenic not near genes chr3L 22570591 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-642 833 chr3L 22577628 22577642 chr3L 22582416 22582430 Doc 8 4787 6.0 5.5 5.8 1.2 4802 chr3L 22577628 intergenic not near genes chr3L 22580029 intergenic not near genes chr3L 22582430 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-642 834 chr3L 22630745 22630774 chr3L 22630820 22630833 9 75 1.0 1.5 1.2 4.1 88 chr3L 22630745 intron CG14459 - chr3L 22630789 intron CG14459 - chr3L 22630833 intron CG14459 - chr3L_9_22630001 chr3L_22630001 RAL-642 835 chr3L 22732470 22732496 chr3L 22732551 22732577 5 81 1.0 3.0 2.0 1.7 107 chr3L 22732470 intron CG11367 + chr3L 22732524 intron CG11367 + chr3L 22732577 intron CG11367 + chr3L_5_22730001 chr3L_22730001 RAL-642 836 chr3L 22853468 22853709 chr3L 22853550 22853795 8 85 3.0 6.0 4.5 1.5 327 chr3L 22853468 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853795 5` UTR CR43426 + chr3L_8_22850001 chr3L_22850001 RAL-642 837 chr3L 9102749 9102761 chr3L 22908067 22908067 4 13805311 23.0 11.0 17.0 0.2 13805318 chr3L 9102749 exon bol - chr3L 16005408 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_4_16005001 chr3L_16005001 RAL-642 838 chr3L 24168794 24168803 chr3L 24176119 24176120 ZAM 4 7324 5.5 2.5 4.0 0.8 7326 chr3L 24168794 intron Snap25 + chr3L 24172457 intron Snap25 + chr3L 24176120 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-642 839 chr3L 25331636 25331642 chr3L 25331727 25331732 5 90 3.5 2.0 2.8 1.3 96 chr3L 25331636 intergenic not near genes chr3L 25331684 intergenic not near genes chr3L 25331732 intergenic not near genes chr3L_5_25330001 chr3L_25330001 RAL-642 840 chr3R 1521168 1521180 chr3R 1521245 1521267 10 83 4.0 5.5 4.8 1.7 99 chr3R 1521168 intergenic not near genes chr3R 1521218 intergenic not near genes chr3R 1521267 intergenic not near genes chr3R_10_1520001 chr3R_1520001 RAL-642 841 chr3R 2534137 2534156 chr3R 2541705 2541725 4 7568 11.5 9.0 10.2 0.4 7588 chr3R 2534137 intergenic not near genes chr3R 2537931 intergenic not near genes chr3R 2541725 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-642 842 chr3R 3178703 3178711 chr3R 3595184 3595195 6 416483 4.5 8.0 6.2 0.8 416492 chr3R 3178703 intron CG42617 - chr3R 3386949 intergenic not near genes chr3R 3595195 intergenic not near genes chr3R_6_3385001 chr3R_3385001 RAL-642 843 chr3R 3195318 3195324 chr3R 3195419 3195425 4 100 6.0 6.0 6.0 0.6 107 chr3R 3195318 intron CG42617 - chr3R 3195372 intron CG42617 - chr3R 3195425 intron CG42617 - chr3R_4_3195001 chr3R_3195001 RAL-642 844 chr3R 4408411 4408442 chr3R 4412715 4412746 Juan 9 4301 1.5 2.0 1.8 3.2 4335 chr3R 4408411 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-642 845 chr3R 4609545 4609579 chr3R 4610709 4610743 1360 12 1164 2.5 1.0 1.8 4.3 1198 chr3R 4609545 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-642 846 chr3R 4722354 4722376 chr3R 4722491 4722513 4 137 0.5 3.5 2.0 1.3 159 chr3R 4722354 intron Nep2 - chr3R 4722434 intron Nep2 - chr3R 4722513 intron Nep2 - chr3R_4_4720001 chr3R_4720001 RAL-642 847 chr3R 4739121 4739147 chr3R 4739198 4739221 8 76 1.5 4.5 3.0 2.0 100 chr3R 4739121 intron tacc - chr3R 4739171 intron tacc - chr3R 4739221 intron tacc - chr3R_8_4735001 chr3R_4735001 RAL-642 848 chr3R 4759731 4759744 chr3R 4761224 4761241 hopper2 5 1496 4.0 6.0 5.0 0.8 1510 chr3R 4759731 intron,intron atms +,CG44098 - chr3R 4760486 intron,intron atms +,CG44098 - chr3R 4761241 intron,intron atms +,CG44098 - chr3R_5_4760001 chr3R_4760001 RAL-642 849 chr3R 4769159 4769188 chr3R 4769237 4769265 8 78 4.0 2.0 3.0 2.0 106 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-642 850 chr3R 4887485 4887503 chr3R 4894862 4894880 rover 6 7376 5.0 7.5 6.2 0.8 7395 chr3R 4887485 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894880 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-642 851 chr3R 5067980 5068014 chr3R 5073497 5073531 mdg3 5 5516 3.0 3.0 3.0 1.2 5551 chr3R 5067980 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-642 852 chr3R 5338395 5338421 chr3R 5343571 5343598 Rt1c 4 5177 2.5 4.5 3.5 0.9 5203 chr3R 5338395 intron mtd - chr3R 5340996 intron mtd - chr3R 5343598 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-642 853 chr3R 5385973 5386005 chr3R 5386144 5386176 10 169 2.0 5.0 3.5 2.2 203 chr3R 5385973 intron kkv - chr3R 5386074 intron kkv - chr3R 5386176 intron kkv - chr3R_10_5385001 chr3R_5385001 RAL-642 854 chr3R 5445970 5445983 chr3R 5452430 5452443 Burdock 4 6460 1.0 1.5 1.2 1.8 6473 chr3R 5445970 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452443 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-642 855 chr3R 5627147 5627181 chr3R 5627558 5627589 7 410 2.0 2.0 2.0 2.3 442 chr3R 5627147 intergenic not near genes chr3R 5627368 intergenic CG31551 + chr3R 5627589 intergenic CG31551 + chr3R_7_5625001 chr3R_5625001 RAL-642 856 chr3R 5726107 5726121 chr3R 5726269 5726283 4 162 1.5 2.0 1.8 1.4 176 chr3R 5726107 intergenic not near genes chr3R 5726195 intergenic not near genes chr3R 5726283 intergenic not near genes chr3R_4_5725001 chr3R_5725001 RAL-642 857 chr3R 5746030 5746046 chr3R 5746261 5746287 pogo 6 238 3.5 5.0 4.2 1.2 257 chr3R 5746030 3` UTR Madm + chr3R 5746158 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-642 858 chr3R 5772384 5772406 chr3R 5772541 5772564 6 157 3.0 3.5 3.2 1.4 180 chr3R 5772384 intron CG2082 - chr3R 5772474 intron CG2082 - chr3R 5772564 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-642 859 chr3R 5809116 5809145 chr3R 5809357 5809386 pogo 4 240 2.5 1.0 1.8 1.4 270 chr3R 5809116 3` UTR CG11000 + chr3R 5809251 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-642 860 chr3R 5927566 5927588 chr3R 5927802 5927827 pogo 8 238 0.5 1.5 1.0 4.0 261 chr3R 5927566 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927827 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-642 861 chr3R 5989336 5989369 chr3R 5989418 5989448 15 81 1.5 2.0 1.8 5.4 112 chr3R 5989336 5` UTR CR44927 + chr3R 5989392 5` UTR CR44927 + chr3R 5989448 5` UTR CR44927 + chr3R_15_5985001 chr3R_5985001 RAL-642 862 chr3R 6015963 6015990 chr3R 6024442 6024470 Tirant 8 8480 2.5 2.0 2.2 2.5 8507 chr3R 6015963 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024470 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-642 863 chr3R 6117421 6117443 chr3R 6117538 6117545 6 113 1.5 5.5 3.5 1.3 124 chr3R 6117421 intergenic not near genes chr3R 6117483 intergenic not near genes chr3R 6117545 intergenic not near genes chr3R_6_6115001 chr3R_6115001 RAL-642 864 chr3R 6158510 6158540 chr3R 6167093 6167123 Tirant 6 8583 3.5 2.5 3.0 1.5 8613 chr3R 6158510 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-642 865 chr3R 6206286 6206318 chr3R 6206502 6206535 BS 8 214 2.5 2.0 2.2 2.5 249 chr3R 6206286 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_8_6205001 chr3R_6205001 RAL-642 866 chr3R 6299925 6299944 chr3R 6301400 6301416 6 1473 17.0 20.0 18.5 0.3 1491 chr3R 6299925 intron Osi14 + chr3R 6300670 3` UTR Osi14 + chr3R 6301416 intergenic Osi15 + chr3R_6_6300001 chr3R_6300001 RAL-642 867 chr3R 6428811 6428826 chr3R 6428913 6428928 4 102 2.0 1.0 1.5 1.6 117 chr3R 6428811 intron gpp + chr3R 6428870 intron gpp + chr3R 6428928 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-642 868 chr3R 6690692 6690702 chr3R 6690778 6690786 5 85 2.0 1.5 1.8 1.8 94 chr3R 6690692 intergenic Ccp84Ae -,Ccp84Af - chr3R 6690739 intergenic Ccp84Ae -,Ccp84Af - chr3R 6690786 intergenic Ccp84Ae - chr3R_5_6690001 chr3R_6690001 RAL-642 869 chr3R 6705691 6705717 chr3R 6705911 6705941 4 223 1.0 0.0 0.5 2.7 250 chr3R 6705691 intergenic not near genes chr3R 6705816 intergenic not near genes chr3R 6705941 intergenic not near genes chr3R_4_6705001 chr3R_6705001 RAL-642 870 chr3R 6737498 6737523 chr3R 6739285 6739310 Doc 5 1785 3.5 0.5 2.0 1.7 1812 chr3R 6737498 intron pb - chr3R 6738404 intron pb - chr3R 6739310 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-642 871 chr3R 6918070 6918092 chr3R 6918148 6918169 5 78 1.0 2.0 1.5 2.0 99 chr3R 6918070 intron Antp - chr3R 6918120 intron Antp - chr3R 6918169 intron Antp - chr3R_5_6915001 chr3R_6915001 RAL-642 872 chr3R 6961184 6961190 chr3R 6961262 6961266 4 78 5.0 1.5 3.2 1.0 82 chr3R 6961184 intron Antp - chr3R 6961225 intron Antp - chr3R 6961266 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-642 873 chr3R 7103296 7103316 chr3R 7103371 7103392 6 75 2.0 1.5 1.8 2.1 96 chr3R 7103296 intron Alh - chr3R 7103344 intron Alh - chr3R 7103392 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-642 874 chr3R 7228644 7228678 chr3R 7228730 7228764 8 85 0.5 3.5 2.0 2.7 120 chr3R 7228644 intron CG14608 + chr3R 7228704 intron CG14608 + chr3R 7228764 intron CG14608 + chr3R_8_7225001 chr3R_7225001 RAL-642 875 chr3R 7302303 7302326 chr3R 7302394 7302418 5 91 2.0 1.0 1.5 2.0 115 chr3R 7302303 intron rn - chr3R 7302360 intron rn - chr3R 7302418 intron rn - chr3R_5_7300001 chr3R_7300001 RAL-642 876 chr3R 7385783 7385807 chr3R 7385868 7385872 5 81 0.5 4.5 2.5 1.4 89 chr3R 7385783 intergenic not near genes chr3R 7385828 intergenic not near genes chr3R 7385872 intergenic not near genes chr3R_5_7385001 chr3R_7385001 RAL-642 877 chr3R 7447992 7448012 chr3R 7448070 7448090 7 76 2.5 1.5 2.0 2.3 98 chr3R 7447992 intergenic not near genes chr3R 7448041 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_7_7445001 chr3R_7445001 RAL-642 878 chr3R 7464695 7464723 chr3R 7464781 7464809 5 85 2.0 4.0 3.0 1.2 114 chr3R 7464695 intergenic not near genes chr3R 7464752 intergenic not near genes chr3R 7464809 intergenic not near genes chr3R_5_7460001 chr3R_7460001 RAL-642 879 chr3R 7556943 7556964 chr3R 7557034 7557057 5 90 0.0 2.0 1.0 2.5 114 chr3R 7556943 intergenic not near genes chr3R 7557000 intergenic not near genes chr3R 7557057 intergenic not near genes chr3R_5_7555001 chr3R_7555001 RAL-642 880 chr3R 7646571 7646591 chr3R 7646779 7646801 5 209 0.5 2.5 1.5 2.0 230 chr3R 7646571 intergenic not near genes chr3R 7646686 intergenic not near genes chr3R 7646801 intergenic not near genes chr3R_5_7645001 chr3R_7645001 RAL-642 881 chr3R 7668866 7668884 chr3R 7668933 7668962 6 75 3.0 3.0 3.0 1.5 96 chr3R 7668866 intron Nlg1 + chr3R 7668914 intron Nlg1 + chr3R 7668962 intron Nlg1 + chr3R_6_7665001 chr3R_7665001 RAL-642 882 chr3R 7677917 7677939 chr3R 7678030 7678049 5 112 1.5 3.0 2.2 1.6 132 chr3R 7677917 intron Nlg1 + chr3R 7677983 intron Nlg1 + chr3R 7678049 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-642 883 chr3R 7682272 7682293 chr3R 7682360 7682381 5 87 2.0 4.5 3.2 1.2 109 chr3R 7682272 intron Nlg1 + chr3R 7682326 intron Nlg1 + chr3R 7682381 intron Nlg1 + chr3R_5_7680001 chr3R_7680001 RAL-642 884 chr3R 7726155 7726189 chr3R 7726231 7726266 10 77 1.5 2.5 2.0 3.3 111 chr3R 7726155 intergenic not near genes chr3R 7726210 intergenic not near genes chr3R 7726266 intergenic not near genes chr3R_10_7725001 chr3R_7725001 RAL-642 885 chr3R 7821718 7821740 chr3R 7821814 7821834 6 96 3.5 1.0 2.2 1.9 116 chr3R 7821718 intron CG34384 + chr3R 7821776 intron CG34384 + chr3R 7821834 intron CG34384 + chr3R_6_7820001 chr3R_7820001 RAL-642 886 chr3R 7849646 7849671 chr3R 7850813 7850835 1360 7 1167 1.0 4.0 2.5 2.0 1189 chr3R 7849646 intron CG34384 + chr3R 7850240 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-642 887 chr3R 7948447 7948467 chr3R 7948524 7948530 5 71 3.0 2.5 2.8 1.3 83 chr3R 7948447 intron dsx - chr3R 7948488 intron dsx - chr3R 7948530 intron dsx - chr3R_5_7945001 chr3R_7945001 RAL-642 888 chr3R 7964533 7964560 chr3R 7964620 7964646 5 85 2.5 2.0 2.2 1.6 113 chr3R 7964533 intron dsx - chr3R 7964590 intron dsx - chr3R 7964646 intron dsx - chr3R_5_7960001 chr3R_7960001 RAL-642 889 chr3R 7973312 7973347 chr3R 7974374 7974411 1360 5 1063 1.0 1.5 1.2 2.3 1099 chr3R 7973312 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974411 3` UTR CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-642 890 chr3R 8090273 8090293 chr3R 8090450 8090470 5 175 2.5 2.0 2.2 1.6 197 chr3R 8090273 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090470 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-642 891 chr3R 8094422 8094440 chr3R 8099727 8099744 Transpac 5 5305 1.0 1.5 1.2 2.3 5322 chr3R 8094422 intron CG7900 + chr3R 8097083 intron CG7900 + chr3R 8099744 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-642 892 chr3R 8101770 8101774 chr3R 8104852 8104858 G2 6 3083 5.0 3.5 4.2 1.2 3088 chr3R 8101770 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104858 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-642 893 chr3R 8101775 8101781 chr3R 8104846 8104865 G2 4 3079 4.0 3.5 3.8 0.8 3090 chr3R 8101775 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104865 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-642 894 chr3R 8182651 8182685 chr3R 8182744 8182779 10 92 1.0 4.5 2.8 2.6 128 chr3R 8182651 intergenic not near genes chr3R 8182715 intergenic not near genes chr3R 8182779 intergenic not near genes chr3R_10_8180001 chr3R_8180001 RAL-642 895 chr3R 8188386 8188509 chr3R 8188471 8188600 5 86 1.0 2.0 1.5 2.0 214 chr3R 8188386 intergenic not near genes chr3R 8188493 intergenic not near genes chr3R 8188600 intergenic not near genes chr3R_5_8185001 chr3R_8185001 RAL-642 896 chr3R 8219660 8219678 chr3R 8219968 8219985 6 308 0.0 2.0 1.0 3.0 325 chr3R 8219660 exon CG7800 + chr3R 8219822 intergenic CG7800 +,CG18249 + chr3R 8219985 intergenic CG18249 +,CG7800 + chr3R_6_8215001 chr3R_8215001 RAL-642 897 chr3R 8339246 8339247 chr3R 21907534 21907536 6 13568289 12.5 12.5 12.5 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-642 898 chr3R 8363225 8363230 chr3R 8363281 8363290 4 57 7.5 3.5 5.5 0.6 65 chr3R 8363225 exon CG7963 + chr3R 8363258 exon CG7963 + chr3R 8363290 exon CG7963 + chr3R_4_8360001 chr3R_8360001 RAL-642 899 chr3R 8403009 8403040 chr3R 8412171 8412206 roo 12 9164 2.5 5.5 4.0 2.4 9197 chr3R 8403009 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_12_8405001 chr3R_8405001 RAL-642 900 chr3R 8526511 8526545 chr3R 8526588 8526622 7 76 2.0 0.5 1.2 3.2 111 chr3R 8526511 3` UTR CG31259 + chr3R 8526566 3` UTR CG31259 + chr3R 8526622 3` UTR CG31259 + chr3R_7_8525001 chr3R_8525001 RAL-642 901 chr3R 8537821 8537855 chr3R 8537904 8537924 11 81 2.0 3.0 2.5 3.1 103 chr3R 8537821 intergenic not near genes chr3R 8537872 intergenic not near genes chr3R 8537924 intergenic not near genes chr3R_11_8535001 chr3R_8535001 RAL-642 902 chr3R 8570480 8570509 chr3R 8575116 8575145 HMS-Beagle 11 4636 4.0 3.5 3.8 2.3 4665 chr3R 8570480 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-642 903 chr3R 8576167 8576180 chr3R 8576338 8576351 4 171 3.0 3.5 3.2 1.0 184 chr3R 8576167 intergenic not near genes chr3R 8576259 intergenic not near genes chr3R 8576351 intergenic not near genes chr3R_4_8575001 chr3R_8575001 RAL-642 904 chr3R 8601775 8601799 chr3R 8610928 8610951 roo 5 9147 1.5 1.5 1.5 2.0 9176 chr3R 8601775 intron 5-HT2B + chr3R 8606363 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-642 905 chr3R 8631511 8631544 chr3R 8631615 8631648 5 104 0.5 4.5 2.5 1.4 137 chr3R 8631511 intergenic not near genes chr3R 8631580 intergenic not near genes chr3R 8631648 intergenic not near genes chr3R_5_8630001 chr3R_8630001 RAL-642 906 chr3R 8707364 8707380 chr3R 8709805 8709821 jockey 9 2439 0.5 3.5 2.0 3.0 2457 chr3R 8707364 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709821 intergenic not near genes chr3R_9_8705001 chr3R_8705001 RAL-642 907 chr3R 8740247 8740276 chr3R 8740336 8740365 10 88 2.0 1.0 1.5 4.0 118 chr3R 8740247 intron CG9801 - chr3R 8740306 intron CG9801 - chr3R 8740365 intron CG9801 - chr3R_10_8740001 chr3R_8740001 RAL-642 908 chr3R 8743186 8743218 chr3R 8743268 8743300 12 82 4.0 2.5 3.2 2.9 114 chr3R 8743186 intron CG9801 - chr3R 8743243 intron CG9801 - chr3R 8743300 intron CG9801 - chr3R_12_8740001 chr3R_8740001 RAL-642 909 chr3R 8917889 8917894 chr3R 8917969 8917974 4 80 1.5 4.0 2.8 1.1 85 chr3R 8917889 intron pyd - chr3R 8917932 intron pyd - chr3R 8917974 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-642 910 chr3R 8974638 8974664 chr3R 8974718 8974745 5 81 1.5 2.5 2.0 1.7 107 chr3R 8974638 intergenic not near genes chr3R 8974692 intergenic not near genes chr3R 8974745 intergenic not near genes chr3R_5_8970001 chr3R_8970001 RAL-642 911 chr3R 9089441 9089471 chr3R 9089520 9089550 8 77 0.5 2.5 1.5 3.2 109 chr3R 9089441 intron pum - chr3R 9089496 intron pum - chr3R 9089550 intron pum - chr3R_8_9085001 chr3R_9085001 RAL-642 912 chr3R 9204263 9204280 chr3R 9204337 9204363 8 83 4.5 4.0 4.2 1.5 100 chr3R 9204263 intron pum - chr3R 9204313 intron pum - chr3R 9204363 intron pum - chr3R_8_9200001 chr3R_9200001 RAL-642 913 chr3R 9288107 9288134 chr3R 9288184 9288212 8 77 1.5 1.5 1.5 3.2 105 chr3R 9288107 intergenic not near genes chr3R 9288160 intergenic not near genes chr3R 9288212 intergenic not near genes chr3R_8_9285001 chr3R_9285001 RAL-642 914 chr3R 9298233 9298254 chr3R 9298319 9298342 7 87 2.5 3.5 3.0 1.8 109 chr3R 9298233 intron CG8861 - chr3R 9298288 intron CG8861 - chr3R 9298342 intron CG8861 - chr3R_7_9295001 chr3R_9295001 RAL-642 915 chr3R 9319586 9319605 chr3R 9320020 9320038 jockey 5 434 0.5 5.0 2.8 1.3 452 chr3R 9319586 intron CG8861 - chr3R 9319812 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-642 916 chr3R 9381393 9381408 chr3R 9381472 9381502 9 88 4.5 3.0 3.8 1.9 109 chr3R 9381393 intron FER - chr3R 9381448 intron FER - chr3R 9381502 intron FER - chr3R_9_9380001 chr3R_9380001 RAL-642 917 chr3R 9526592 9526601 chr3R 9526670 9526682 4 80 1.0 2.0 1.5 1.6 90 chr3R 9526592 exon CG8176 + chr3R 9526637 3` UTR CG8176 + chr3R 9526682 3` UTR CG8176 + chr3R_4_9525001 chr3R_9525001 RAL-642 918 chr3R 9526617 9526620 chr3R 9526669 9526700 4 67 1.0 2.0 1.5 1.6 83 chr3R 9526617 3` UTR CG8176 + chr3R 9526658 3` UTR CG8176 + chr3R 9526700 3` UTR CG8176 + chr3R_4_9525001 chr3R_9525001 RAL-642 919 chr3R 9586694 9586716 chr3R 9586786 9586808 4 92 4.5 0.5 2.5 1.1 114 chr3R 9586694 intergenic CG8301 +,P58IPK + chr3R 9586751 intergenic CG8301 +,P58IPK + chr3R 9586808 intergenic P58IPK +,CG8301 + chr3R_4_9585001 chr3R_9585001 RAL-642 920 chr3R 9608673 9608690 chr3R 9608927 9608930 5 258 2.5 3.5 3.0 1.2 257 chr3R 9608673 intron CG8312 + chr3R 9608802 intron CG8312 + chr3R 9608930 intron CG8312 + chr3R_5_9605001 chr3R_9605001 RAL-642 921 chr3R 9824510 9824534 chr3R 9824758 9824779 6 246 2.5 3.0 2.8 1.6 269 chr3R 9824510 3` UTR CR42858 - chr3R 9824644 3` UTR CR42858 - chr3R 9824779 intron CR42858 - chr3R_6_9820001 chr3R_9820001 RAL-642 922 chr3R 9898798 9898819 chr3R 9898890 9898911 4 90 5.5 3.5 4.5 0.7 113 chr3R 9898798 intron Glut4EF + chr3R 9898854 intron Glut4EF + chr3R 9898911 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-642 923 chr3R 10087050 10087083 chr3R 10087189 10087222 10 138 0.5 6.5 3.5 2.2 172 chr3R 10087050 intron CR45054 + chr3R 10087136 intron CR45054 + chr3R 10087222 intron CR45054 + chr3R_10_10085001 chr3R_10085001 RAL-642 924 chr3R 10095769 10095782 chr3R 10095948 10095961 4 180 3.0 1.5 2.2 1.2 192 chr3R 10095769 5` UTR CR43459 + chr3R 10095865 5` UTR CR43459 + chr3R 10095961 5` UTR CR43459 + chr3R_4_10095001 chr3R_10095001 RAL-642 925 chr3R 10130132 10130164 chr3R 10130246 10130282 8 116 1.0 1.5 1.2 3.6 150 chr3R 10130132 intron tws - chr3R 10130207 intron tws - chr3R 10130282 intron tws - chr3R_8_10130001 chr3R_10130001 RAL-642 926 chr3R 10231789 10231814 chr3R 10237366 10237391 mdg3 5 5577 0.5 2.0 1.2 2.3 5602 chr3R 10231789 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237391 intron CG42795 + chr3R_5_10230001 chr3R_10230001 RAL-642 927 chr3R 10593446 10593462 chr3R 10593515 10593544 7 79 1.5 2.5 2.0 2.3 98 chr3R 10593446 intron hth - chr3R 10593495 intron hth - chr3R 10593544 intron hth - chr3R_7_10590001 chr3R_10590001 RAL-642 928 chr3R 10641593 10641624 chr3R 10641670 10641677 7 75 2.0 0.5 1.2 3.2 84 chr3R 10641593 5` UTR CR44018 + chr3R 10641635 5` UTR CR44018 + chr3R 10641677 5` UTR CR44018 + chr3R_7_10640001 chr3R_10640001 RAL-642 929 chr3R 10646106 10646140 chr3R 10646257 10646257 5 144 0.5 3.0 1.8 1.8 151 chr3R 10646106 intergenic CR44018 + chr3R 10646182 intergenic CR44018 + chr3R 10646257 intergenic CR44018 + chr3R_5_10645001 chr3R_10645001 RAL-642 930 chr3R 10730948 10730979 chr3R 10731242 10731273 9 294 1.0 2.0 1.5 3.6 325 chr3R 10730948 intergenic not near genes chr3R 10731110 intergenic not near genes chr3R 10731273 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-642 931 chr3R 10752721 10752750 chr3R 10752806 10752835 7 83 1.5 2.5 2.0 2.3 114 chr3R 10752721 intergenic not near genes chr3R 10752778 intergenic not near genes chr3R 10752835 intergenic CG14691 - chr3R_7_10750001 chr3R_10750001 RAL-642 932 chr3R 10952764 10952789 chr3R 10952837 10952872 17 79 2.0 3.5 2.8 4.5 108 chr3R 10952764 intergenic not near genes chr3R 10952818 intergenic not near genes chr3R 10952872 intergenic not near genes chr3R_17_10950001 chr3R_10950001 RAL-642 933 chr3R 11008772 11008798 chr3R 11008935 11008961 7 161 2.0 2.5 2.2 2.2 189 chr3R 11008772 intron CG34114 + chr3R 11008866 intron CG34114 + chr3R 11008961 intron CG34114 + chr3R_7_11005001 chr3R_11005001 RAL-642 934 chr3R 11056124 11056147 chr3R 11056203 11056210 6 76 1.0 3.0 2.0 2.0 86 chr3R 11056124 intergenic not near genes chr3R 11056167 intergenic not near genes chr3R 11056210 intergenic not near genes chr3R_6_11055001 chr3R_11055001 RAL-642 935 chr3R 11121181 11121195 chr3R 11121270 11121284 4 88 7.0 4.5 5.8 0.6 103 chr3R 11121181 intergenic not near genes chr3R 11121232 intergenic not near genes chr3R 11121284 intergenic not near genes chr3R_4_11120001 chr3R_11120001 RAL-642 936 chr3R 11263507 11263526 chr3R 11263584 11263609 4 81 4.0 2.0 3.0 1.0 102 chr3R 11263507 intergenic not near genes chr3R 11263558 intergenic not near genes chr3R 11263609 intergenic not near genes chr3R_4_11260001 chr3R_11260001 RAL-642 937 chr3R 11656502 11656530 chr3R 11656582 11656610 11 79 4.5 3.0 3.8 2.3 108 chr3R 11656502 5` UTR CG42327 + chr3R 11656556 5` UTR CG42327 + chr3R 11656610 5` UTR CG42327 + chr3R_11_11655001 chr3R_11655001 RAL-642 938 chr3R 11708631 11708646 chr3R 11708839 11708854 5 208 3.5 0.0 1.8 1.8 223 chr3R 11708631 intergenic not near genes chr3R 11708742 intergenic not near genes chr3R 11708854 intergenic not near genes chr3R_5_11705001 chr3R_11705001 RAL-642 939 chr3R 11710213 11710235 chr3R 11710286 11710313 8 77 3.0 2.0 2.5 2.3 100 chr3R 11710213 intergenic not near genes chr3R 11710263 intergenic not near genes chr3R 11710313 intergenic not near genes chr3R_8_11710001 chr3R_11710001 RAL-642 940 chr3R 11734166 11734189 chr3R 11734285 11734307 7 118 2.0 3.0 2.5 2.0 141 chr3R 11734166 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734307 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-642 941 chr3R 11803354 11803370 chr3R 11803441 11803458 4 88 1.0 3.0 2.0 1.3 104 chr3R 11803354 intron ClC-a - chr3R 11803406 intron ClC-a - chr3R 11803458 intron ClC-a - chr3R_4_11800001 chr3R_11800001 RAL-642 942 chr3R 11834176 11834197 chr3R 11834259 11834267 5 77 2.0 4.5 3.2 1.2 91 chr3R 11834176 intron CG6959 - chr3R 11834222 intron CG6959 - chr3R 11834267 intron CG6959 - chr3R_5_11830001 chr3R_11830001 RAL-642 943 chr3R 11840055 11840081 chr3R 11840152 11840178 5 96 2.5 0.0 1.2 2.3 123 chr3R 11840055 intron CG6959 - chr3R 11840116 intron CG6959 - chr3R 11840178 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-642 944 chr3R 11841062 11841096 chr3R 11846250 11846287 BS 6 5190 1.5 2.5 2.0 2.0 5225 chr3R 11841062 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-642 945 chr3R 11853434 11853471 chr3R 11853583 11853633 4 152 1.5 0.5 1.0 2.0 199 chr3R 11853434 intron CG6959 - chr3R 11853534 intron CG6959 - chr3R 11853633 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-642 946 chr3R 12111901 12111913 chr3R 12111977 12111989 4 76 0.0 1.5 0.8 2.2 88 chr3R 12111901 intergenic dpr17 + chr3R 12111945 intergenic not near genes chr3R 12111989 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-642 947 chr3R 12274669 12274701 chr3R 12274795 12274827 17 125 4.0 3.5 3.8 3.5 158 chr3R 12274669 intron svp + chr3R 12274748 intron svp + chr3R 12274827 intron svp + chr3R_17_12270001 chr3R_12270001 RAL-642 948 chr3R 12307236 12307256 chr3R 12307312 12307329 4 77 1.0 0.5 0.8 2.2 93 chr3R 12307236 intergenic not near genes chr3R 12307282 intergenic not near genes chr3R 12307329 intergenic not near genes chr3R_4_12305001 chr3R_12305001 RAL-642 949 chr3R 12344137 12344155 chr3R 12344214 12344228 4 76 0.0 2.5 1.2 1.8 91 chr3R 12344137 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344228 intergenic not near genes chr3R_4_12340001 chr3R_12340001 RAL-642 950 chr3R 12666765 12666801 chr3R 12666892 12666899 4 120 3.5 1.0 2.2 1.2 134 chr3R 12666765 intron CG14395 + chr3R 12666832 intron CG14395 + chr3R 12666899 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-642 951 chr3R 12706467 12706480 chr3R 12715779 12715794 8 9313 24.0 20.5 22.2 0.3 9327 chr3R 12706467 exon mus308 - chr3R 12711130 exon mus308 - chr3R 12715794 intron Men - chr3R_8_12710001 chr3R_12710001 RAL-642 952 chr3R 12725966 12725967 chr3R 12726048 12726058 4 88 2.0 3.5 2.8 1.1 92 chr3R 12725966 intergenic not near genes chr3R 12726012 intergenic not near genes chr3R 12726058 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-642 953 chr3R 12733474 12733507 chr3R 12733551 12733552 9 73 1.5 1.0 1.2 4.1 78 chr3R 12733474 intergenic not near genes chr3R 12733513 intergenic not near genes chr3R 12733552 intergenic not near genes chr3R_9_12730001 chr3R_12730001 RAL-642 954 chr3R 12763124 12763140 chr3R 12763201 12763217 5 77 0.0 1.0 0.5 3.3 93 chr3R 12763124 intron beat-Vc - chr3R 12763170 intron beat-Vc - chr3R 12763217 intron beat-Vc - chr3R_5_12760001 chr3R_12760001 RAL-642 955 chr3R 12766407 12766440 chr3R 12766491 12766516 7 78 1.0 2.0 1.5 2.8 109 chr3R 12766407 intron beat-Vc - chr3R 12766462 intron beat-Vc - chr3R 12766516 intron beat-Vc - chr3R_7_12765001 chr3R_12765001 RAL-642 956 chr3R 12866492 12866514 chr3R 12866643 12866665 6 150 0.5 3.5 2.0 2.0 173 chr3R 12866492 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-642 957 chr3R 12920151 12920180 chr3R 12925354 12925383 copia 8 5202 1.5 2.5 2.0 2.7 5232 chr3R 12920151 intron beat-Vb + chr3R 12922767 intron beat-Vb + chr3R 12925383 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-642 958 chr3R 12931216 12931238 chr3R 12931292 12931315 8 73 3.5 2.5 3.0 2.0 99 chr3R 12931216 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931266 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931315 intron,3` UTR beat-Vb +,CR44236 - chr3R_8_12930001 chr3R_12930001 RAL-642 959 chr3R 13120776 13120798 chr3R 13120852 13120856 8 74 0.5 3.0 1.8 2.9 80 chr3R 13120776 intron timeout + chr3R 13120816 intron timeout + chr3R 13120856 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-642 960 chr3R 13143055 13143066 chr3R 13148617 13148642 mdg3 5 5568 3.5 2.5 3.0 1.2 5587 chr3R 13143055 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145848 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-642 961 chr3R 13164552 13164567 chr3R 13165616 13165647 8 1077 8.0 9.0 8.5 0.8 1095 chr3R 13164552 intergenic not near genes chr3R 13165100 intergenic not near genes chr3R 13165647 intergenic not near genes chr3R_8_13165001 chr3R_13165001 RAL-642 962 chr3R 13163297 13163323 chr3R 13165910 13165936 6 2614 23.0 11.5 17.2 0.3 2639 chr3R 13163297 exon timeout + chr3R 13164616 intergenic not near genes chr3R 13165936 intergenic not near genes chr3R_6_13160001 chr3R_13160001 RAL-642 963 chr3R 13173445 13173474 chr3R 13173527 13173556 9 81 0.5 3.5 2.0 3.0 111 chr3R 13173445 intergenic not near genes chr3R 13173500 intergenic not near genes chr3R 13173556 intergenic not near genes chr3R_9_13170001 chr3R_13170001 RAL-642 964 chr3R 13205414 13205443 chr3R 13205494 13205513 12 76 0.5 2.5 1.5 4.8 99 chr3R 13205414 intergenic not near genes chr3R 13205464 intergenic not near genes chr3R 13205513 intergenic not near genes chr3R_12_13205001 chr3R_13205001 RAL-642 965 chr3R 13378837 13378867 chr3R 13378928 13378958 11 90 2.0 2.0 2.0 3.7 121 chr3R 13378837 intron CG9813 - chr3R 13378898 intron CG9813 - chr3R 13378958 intron CG9813 - chr3R_11_13375001 chr3R_13375001 RAL-642 966 chr3R 13391268 13391286 chr3R 13391355 13391373 5 85 2.5 3.0 2.8 1.3 105 chr3R 13391268 intron CCHa2 - chr3R 13391320 intron CCHa2 - chr3R 13391373 intron CCHa2 - chr3R_5_13390001 chr3R_13390001 RAL-642 967 chr3R 13529807 13529829 chr3R 13530011 13530038 5 208 2.0 0.5 1.2 2.3 231 chr3R 13529807 intergenic CG42778 - chr3R 13529922 intergenic not near genes chr3R 13530038 intergenic not near genes chr3R_5_13525001 chr3R_13525001 RAL-642 968 chr3R 13625700 13625712 chr3R 13625780 13625793 4 81 0.0 0.0 0.0 4.0 93 chr3R 13625700 intergenic not near genes chr3R 13625746 intergenic not near genes chr3R 13625793 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-642 969 chr3R 13693028 13693028 chr3R 21907534 21907535 6 8214507 3.5 12.5 8.0 0.7 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-642 970 chr3R 13782051 13782089 chr3R 13782132 13782170 4 81 1.0 1.5 1.2 1.8 119 chr3R 13782051 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782170 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-642 971 chr3R 13941421 13941450 chr3R 13941501 13941529 8 80 2.5 0.0 1.2 3.6 108 chr3R 13941421 intergenic not near genes chr3R 13941475 intergenic not near genes chr3R 13941529 intergenic not near genes chr3R_8_13940001 chr3R_13940001 RAL-642 972 chr3R 14083400 14083410 chr3R 14083501 14083511 4 101 5.0 0.0 2.5 1.1 111 chr3R 14083400 intron foxo + chr3R 14083456 intron foxo + chr3R 14083511 intron foxo + chr3R_4_14080001 chr3R_14080001 RAL-642 973 chr3R 14159821 14159846 chr3R 14160426 14160451 5 604 3.0 4.0 3.5 1.1 630 chr3R 14159821 exon CG31327 - chr3R 14160136 exon CG31327 - chr3R 14160451 intergenic CG31327 - chr3R_5_14160001 chr3R_14160001 RAL-642 974 chr3R 14166679 14166690 chr3R 14167320 14167335 4 644 4.5 4.5 4.5 0.7 656 chr3R 14166679 3` UTR Dop1R1 - chr3R 14167007 3` UTR Dop1R1 - chr3R 14167335 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-642 975 chr3R 14190735 14190760 chr3R 14190825 14190838 7 86 4.0 5.0 4.5 1.3 103 chr3R 14190735 intron Dop1R1 - chr3R 14190786 intron Dop1R1 - chr3R 14190838 intron Dop1R1 - chr3R_7_14190001 chr3R_14190001 RAL-642 976 chr3R 14246413 14246418 chr3R 14247893 14247906 jockey 4 1484 4.0 2.0 3.0 1.0 1493 chr3R 14246413 intergenic not near genes chr3R 14247160 intergenic not near genes chr3R 14247906 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-642 977 chr3R 14364067 14364092 chr3R 14364144 14364159 6 71 4.0 4.5 4.2 1.2 92 chr3R 14364067 intron NK7.1 - chr3R 14364113 intron NK7.1 - chr3R 14364159 intron NK7.1 - chr3R_6_14360001 chr3R_14360001 RAL-642 978 chr3R 14532253 14532268 chr3R 14532565 14532572 5 311 4.0 6.0 5.0 0.8 319 chr3R 14532253 intron Pde6 - chr3R 14532412 intron Pde6 - chr3R 14532572 intron Pde6 - chr3R_5_14530001 chr3R_14530001 RAL-642 979 chr3R 14662315 14662338 chr3R 14662396 14662416 7 81 5.0 5.0 5.0 1.2 101 chr3R 14662315 exon Rad17 - chr3R 14662366 intron Rad17 - chr3R 14662416 exon Rad17 - chr3R_7_14660001 chr3R_14660001 RAL-642 980 chr3R 14681796 14681833 chr3R 14681893 14681930 8 89 1.5 4.0 2.8 2.1 134 chr3R 14681796 intron Meltrin - chr3R 14681863 intron Meltrin - chr3R 14681930 intron Meltrin - chr3R_8_14680001 chr3R_14680001 RAL-642 981 chr3R 14704387 14704418 chr3R 14704464 14704495 5 75 0.5 1.0 0.8 2.8 108 chr3R 14704387 intron kibra - chr3R 14704441 intron kibra - chr3R 14704495 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-642 982 chr3R 14756474 14756504 chr3R 14760963 14761001 10 4496 2.0 1.0 1.5 4.0 4527 chr3R 14756474 intron jvl + chr3R 14758738 intron jvl + chr3R 14761001 intron jvl + chr3R_10_14755001 chr3R_14755001 RAL-642 983 chr3R 14954824 14954835 chr3R 14955036 14955044 4 211 0.5 2.5 1.5 1.6 220 chr3R 14954824 intergenic not near genes chr3R 14954934 intergenic not near genes chr3R 14955044 intergenic not near genes chr3R_4_14950001 chr3R_14950001 RAL-642 984 chr3R 14984020 14984042 chr3R 14984127 14984128 6 103 1.0 3.5 2.2 1.9 108 chr3R 14984020 intergenic not near genes chr3R 14984074 intergenic not near genes chr3R 14984128 intergenic not near genes chr3R_6_14980001 chr3R_14980001 RAL-642 985 chr3R 15049478 15049485 chr3R 15049590 15049611 6 122 2.5 5.0 3.8 1.2 133 chr3R 15049478 intergenic not near genes chr3R 15049544 intergenic not near genes chr3R 15049611 intergenic not near genes chr3R_6_15045001 chr3R_15045001 RAL-642 986 chr3R 15091926 15091944 chr3R 15092229 15092251 4 306 2.0 3.0 2.5 1.1 325 chr3R 15091926 intron CG6966 - chr3R 15092088 intron CG6966 - chr3R 15092251 intron CG6966 - chr3R_4_15090001 chr3R_15090001 RAL-642 987 chr3R 15114918 15114945 chr3R 15114995 15115022 4 77 0.5 1.0 0.8 2.2 104 chr3R 15114918 intron CG42788 - chr3R 15114970 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-642 988 chr3R 15156610 15156632 chr3R 15156684 15156712 11 78 2.5 0.0 1.2 5.0 102 chr3R 15156610 intron Gyc88E + chr3R 15156661 intron Gyc88E + chr3R 15156712 intron Gyc88E + chr3R_11_15155001 chr3R_15155001 RAL-642 989 chr3R 15167804 15167834 chr3R 15167961 15167991 6 156 6.0 1.5 3.8 1.2 187 chr3R 15167804 intron Gyc88E + chr3R 15167898 intron Gyc88E + chr3R 15167991 intron Gyc88E + chr3R_6_15165001 chr3R_15165001 RAL-642 990 chr3R 15286988 15286988 chr3R 21907535 21907536 4 6620548 15.0 12.0 13.5 0.3 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-642 991 chr3R 15401271 15401282 chr3R 15406174 15406199 6 4907 11.5 6.5 9.0 0.6 4928 chr3R 15401271 3` UTR Rbp + chr3R 15403735 exon CG6125 - chr3R 15406199 intron CG6125 - chr3R_6_15400001 chr3R_15400001 RAL-642 992 chr3R 15416254 15416271 chr3R 15416333 15416351 5 80 3.5 5.5 4.5 0.9 97 chr3R 15416254 3` UTR Atx2 + chr3R 15416302 3` UTR Atx2 + chr3R 15416351 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-642 993 chr3R 15601164 15601196 chr3R 15608685 15608718 412 12 7519 3.5 1.0 2.2 3.8 7554 chr3R 15601164 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-642 994 chr3R 15618731 15618764 chr3R 15626205 15626237 blood 9 7473 0.0 3.0 1.5 3.6 7506 chr3R 15618731 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-642 995 chr3R 15691185 15691312 chr3R 15691289 15691399 4 90 0.5 0.5 0.5 2.7 214 chr3R 15691185 intergenic not near genes chr3R 15691292 intergenic not near genes chr3R 15691399 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-642 996 chr3R 15778726 15778759 chr3R 15778835 15778868 6 109 0.5 3.0 1.8 2.1 142 chr3R 15778726 intergenic not near genes chr3R 15778797 intergenic not near genes chr3R 15778868 intergenic not near genes chr3R_6_15775001 chr3R_15775001 RAL-642 997 chr3R 15790144 15790286 chr3R 15790252 15790404 9 113 3.5 5.5 4.5 1.6 260 chr3R 15790144 exon c(3)G - chr3R 15790274 exon c(3)G - chr3R 15790404 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-642 998 chr3R 15790385 15790402 chr3R 15790591 15790608 6 206 5.5 13.0 9.2 0.6 223 chr3R 15790385 exon c(3)G - chr3R 15790496 exon c(3)G - chr3R 15790608 exon c(3)G - chr3R_6_15790001 chr3R_15790001 RAL-642 999 chr3R 15790836 15790874 chr3R 15790952 15790990 10 114 7.5 11.0 9.2 1.0 154 chr3R 15790836 exon c(3)G - chr3R 15790913 intron c(3)G - chr3R 15790990 exon c(3)G - chr3R_10_15790001 chr3R_15790001 RAL-642 1000 chr3R 15817266 15817275 chr3R 15818267 15818273 4 1000 1.0 3.5 2.2 1.2 1007 chr3R 15817266 intron alpha-Man-IIb + chr3R 15817770 intron alpha-Man-IIb + chr3R 15818273 intron alpha-Man-IIb + chr3R_4_15815001 chr3R_15815001 RAL-642 1001 chr3R 15891675 15891687 chr3R 15892066 15892079 5 391 1.0 4.0 2.5 1.4 404 chr3R 15891675 intron CG14877 - chr3R 15891877 intron CG14877 - chr3R 15892079 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-642 1002 chr3R 15892652 15892676 chr3R 15892733 15892757 4 80 4.0 1.5 2.8 1.1 105 chr3R 15892652 intron CG14877 - chr3R 15892704 intron CG14877 - chr3R 15892757 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-642 1003 chr3R 16472578 16472596 chr3R 16472654 16472666 4 73 5.5 3.5 4.5 0.7 88 chr3R 16472578 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472666 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-642 1004 chr3R 16756327 16756346 chr3R 16762517 16762537 diver 6 6190 1.5 2.0 1.8 2.1 6210 chr3R 16756327 intron bxd - chr3R 16759432 intron bxd - chr3R 16762537 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-642 1005 chr3R 16782013 16782046 chr3R 16782094 16782116 12 79 2.0 6.5 4.2 2.3 103 chr3R 16782013 intergenic not near genes chr3R 16782064 intergenic not near genes chr3R 16782116 intergenic not near genes chr3R_12_16780001 chr3R_16780001 RAL-642 1006 chr3R 16795287 16795312 chr3R 16795377 16795402 6 90 1.0 0.0 0.5 4.0 115 chr3R 16795287 intergenic not near genes chr3R 16795344 intergenic not near genes chr3R 16795402 intergenic not near genes chr3R_6_16795001 chr3R_16795001 RAL-642 1007 chr3R 16921834 16921860 chr3R 16921918 16921944 4 84 1.0 2.0 1.5 1.6 110 chr3R 16921834 intron iab-8 - chr3R 16921889 intron iab-8 - chr3R 16921944 intron iab-8 - chr3R_4_16920001 chr3R_16920001 RAL-642 1008 chr3R 17214025 17214055 chr3R 17214100 17214131 4 75 0.5 1.0 0.8 2.2 106 chr3R 17214025 intergenic not near genes chr3R 17214078 intergenic not near genes chr3R 17214131 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-642 1009 chr3R 17294675 17294698 chr3R 17295102 17295125 BS 7 428 2.0 4.0 3.0 1.8 450 chr3R 17294675 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295125 intergenic not near genes chr3R_7_17290001 chr3R_17290001 RAL-642 1010 chr3R 17335167 17335183 chr3R 17335241 17335258 5 74 3.5 2.5 3.0 1.2 91 chr3R 17335167 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335258 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-642 1011 chr3R 17415968 17416000 chr3R 17416045 17416069 15 76 3.5 3.5 3.5 3.3 101 chr3R 17415968 exon CG5866 + chr3R 17416018 exon CG5866 + chr3R 17416069 exon CG5866 + chr3R_15_17415001 chr3R_17415001 RAL-642 1012 chr3R 17461203 17461222 chr3R 17461285 17461304 4 82 0.5 1.5 1.0 2.0 101 chr3R 17461203 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461304 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-642 1013 chr3R 17521585 17521588 chr3R 17521721 17521746 4 149 0.5 7.5 4.0 0.8 161 chr3R 17521585 intergenic not near genes chr3R 17521666 intergenic not near genes chr3R 17521746 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-642 1014 chr3R 17587213 17587245 chr3R 17587396 17587428 11 181 2.5 6.0 4.2 2.1 215 chr3R 17587213 intergenic not near genes chr3R 17587320 intergenic not near genes chr3R 17587428 intergenic not near genes chr3R_11_17585001 chr3R_17585001 RAL-642 1015 chr3R 17845206 17845219 chr3R 17845265 17845284 4 66 4.0 1.0 2.5 1.1 78 chr3R 17845206 intron tinc + chr3R 17845245 intron tinc + chr3R 17845284 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-642 1016 chr3R 17925855 17925886 chr3R 17927322 17927353 hobo 9 1466 2.0 8.0 5.0 1.5 1498 chr3R 17925855 intron cpo + chr3R 17926604 intron cpo + chr3R 17927353 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-642 1017 chr3R 17935088 17935104 chr3R 17935158 17935179 8 74 3.5 2.5 3.0 2.0 91 chr3R 17935088 intron cpo + chr3R 17935134 intron cpo + chr3R 17935179 intron cpo + chr3R_8_17935001 chr3R_17935001 RAL-642 1018 chr3R 18107120 18107138 chr3R 18107203 18107221 5 83 0.0 1.5 0.8 2.8 101 chr3R 18107120 intron sr + chr3R 18107170 intron sr + chr3R 18107221 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-642 1019 chr3R 18126213 18126229 chr3R 18126290 18126308 4 76 3.0 5.0 4.0 0.8 95 chr3R 18126213 intron sr + chr3R 18126260 intron sr + chr3R 18126308 intron sr + chr3R_4_18125001 chr3R_18125001 RAL-642 1020 chr3R 18157609 18157618 chr3R 18157717 18157726 4 108 0.0 2.5 1.2 1.8 117 chr3R 18157609 intergenic CR45103 + chr3R 18157668 intergenic CR45103 + chr3R 18157726 5` UTR CR45103 + chr3R_4_18155001 chr3R_18155001 RAL-642 1021 chr3R 18206547 18206558 chr3R 18206650 18206668 4 105 0.0 0.0 0.0 4.0 121 chr3R 18206547 intron CG7985 + chr3R 18206608 intron CG7985 + chr3R 18206668 intron CG7985 + chr3R_4_18205001 chr3R_18205001 RAL-642 1022 chr3R 18268996 18269023 chr3R 18269131 18269151 6 134 0.0 2.0 1.0 3.0 155 chr3R 18268996 intron CG18599 + chr3R 18269074 intron CG18599 + chr3R 18269151 intron CG18599 + chr3R_6_18265001 chr3R_18265001 RAL-642 1023 chr3R 18339000 18339019 chr3R 18339104 18339123 6 104 0.0 0.0 0.0 6.0 123 chr3R 18339000 intron CG15803 - chr3R 18339062 intron CG15803 - chr3R 18339123 intron CG15803 - chr3R_6_18335001 chr3R_18335001 RAL-642 1024 chr3R 18342029 18342043 chr3R 18342089 18342109 6 68 2.0 3.5 2.8 1.6 80 chr3R 18342029 intron CG15803 - chr3R 18342069 intron CG15803 - chr3R 18342109 intron CG15803 - chr3R_6_18340001 chr3R_18340001 RAL-642 1025 chr3R 18501593 18501627 chr3R 18501674 18501708 15 79 1.5 2.0 1.8 5.4 115 chr3R 18501593 intron fru - chr3R 18501650 intron fru - chr3R 18501708 intron fru - chr3R_15_18500001 chr3R_18500001 RAL-642 1026 chr3R 18606513 18606532 chr3R 18610745 18610763 F-element 4 4232 2.0 1.5 1.8 1.4 4250 chr3R 18606513 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610763 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-642 1027 chr3R 18781699 18781715 chr3R 18781774 18781790 5 75 4.0 3.0 3.5 1.1 91 chr3R 18781699 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781790 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-642 1028 chr3R 18791509 18791521 chr3R 18791579 18791599 6 77 0.0 1.0 0.5 4.0 90 chr3R 18791509 intron CG7720 - chr3R 18791554 intron CG7720 - chr3R 18791599 intron CG7720 - chr3R_6_18790001 chr3R_18790001 RAL-642 1029 chr3R 18812076 18812109 chr3R 18812154 18812186 15 78 4.0 5.5 4.8 2.6 110 chr3R 18812076 intron CG18208 - chr3R 18812131 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_15_18810001 chr3R_18810001 RAL-642 1030 chr3R 18817506 18817537 chr3R 18817604 18817635 4 98 3.0 0.5 1.8 1.4 129 chr3R 18817506 intron CG18208 - chr3R 18817570 intron CG18208 - chr3R 18817635 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-642 1031 chr3R 18839819 18839834 chr3R 18839903 18839918 7 84 2.5 3.0 2.8 1.8 99 chr3R 18839819 intron CG18208 - chr3R 18839868 intron CG18208 - chr3R 18839918 intron CG18208 - chr3R_7_18835001 chr3R_18835001 RAL-642 1032 chr3R 18856336 18856369 chr3R 18856626 18856658 8 285 4.0 5.5 4.8 1.4 322 chr3R 18856336 intergenic not near genes chr3R 18856497 intergenic not near genes chr3R 18856658 intergenic not near genes chr3R_8_18855001 chr3R_18855001 RAL-642 1033 chr3R 18891816 18891841 chr3R 18891899 18891923 4 83 3.5 1.0 2.2 1.2 107 chr3R 18891816 intergenic not near genes chr3R 18891870 intergenic not near genes chr3R 18891923 intergenic not near genes chr3R_4_18890001 chr3R_18890001 RAL-642 1034 chr3R 18932555 18932562 chr3R 18932729 18932737 4 174 2.0 3.5 2.8 1.1 182 chr3R 18932555 intron CG42613 + chr3R 18932646 intron CG42613 + chr3R 18932737 intron CG42613 + chr3R_4_18930001 chr3R_18930001 RAL-642 1035 chr3R 18932569 18932571 chr3R 18932726 18932746 4 168 1.5 3.0 2.2 1.2 177 chr3R 18932569 intron CG42613 + chr3R 18932658 intron CG42613 + chr3R 18932746 intron CG42613 + chr3R_4_18930001 chr3R_18930001 RAL-642 1036 chr3R 19117064 19117071 chr3R 19117208 19117215 4 143 6.5 0.0 3.2 1.0 151 chr3R 19117064 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117215 intron CG6040 + chr3R_4_19115001 chr3R_19115001 RAL-642 1037 chr3R 19201272 19201308 chr3R 19201359 19201395 6 87 0.5 1.5 1.0 3.0 123 chr3R 19201272 intergenic CG31475 + chr3R 19201334 intergenic CG31475 + chr3R 19201395 intergenic CG31475 + chr3R_6_19200001 chr3R_19200001 RAL-642 1038 chr3R 19702321 19702354 chr3R 19702403 19702436 5 81 1.0 4.0 2.5 1.4 115 chr3R 19702321 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702436 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-642 1039 chr3R 19716218 19716248 chr3R 19716295 19716325 5 77 0.5 0.5 0.5 3.3 107 chr3R 19716218 intergenic CG34286 - chr3R 19716272 intergenic CG34286 - chr3R 19716325 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-642 1040 chr3R 19793896 19793928 chr3R 19793989 19794021 9 92 1.0 1.0 1.0 4.5 125 chr3R 19793896 intergenic bnl - chr3R 19793958 intergenic bnl - chr3R 19794021 intergenic bnl - chr3R_9_19790001 chr3R_19790001 RAL-642 1041 chr3R 19908280 19908302 chr3R 19908364 19908386 6 84 0.0 2.0 1.0 3.0 106 chr3R 19908280 intron RhoGAP92B + chr3R 19908333 intron RhoGAP92B + chr3R 19908386 intron RhoGAP92B + chr3R_6_19905001 chr3R_19905001 RAL-642 1042 chr3R 19989848 19989873 chr3R 19989927 19989928 6 69 5.0 1.5 3.2 1.4 80 chr3R 19989848 intron Hs6st - chr3R 19989888 intron Hs6st - chr3R 19989928 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-642 1043 chr3R 20008819 20008852 chr3R 20008900 20008933 4 80 0.5 2.0 1.2 1.8 114 chr3R 20008819 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008933 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-642 1044 chr3R 20156707 20156723 chr3R 20165859 20165892 roo 6 9163 2.0 2.5 2.2 1.9 9185 chr3R 20156707 intergenic not near genes chr3R 20161300 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-642 1045 chr3R 20205560 20205592 chr3R 20205681 20205714 4 122 1.5 1.0 1.2 1.8 154 chr3R 20205560 intron Nlg4 + chr3R 20205637 intron Nlg4 + chr3R 20205714 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-642 1046 chr3R 20266517 20266546 chr3R 20272988 20273017 Burdock 8 6469 1.5 3.0 2.2 2.5 6500 chr3R 20266517 intron cic + chr3R 20269767 intron cic + chr3R 20273017 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-642 1047 chr3R 20282289 20282306 chr3R 20282365 20282382 4 76 0.5 2.0 1.2 1.8 93 chr3R 20282289 intron cic + chr3R 20282336 intron cic + chr3R 20282382 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-642 1048 chr3R 20331003 20331028 chr3R 20331489 20331514 roo 5 486 2.5 1.0 1.8 1.8 511 chr3R 20331003 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331514 intergenic not near genes chr3R_5_20330001 chr3R_20330001 RAL-642 1049 chr3R 20406489 20406513 chr3R 20406588 20406612 4 99 0.5 0.0 0.2 3.3 123 chr3R 20406489 intron Gfrl - chr3R 20406550 intron Gfrl - chr3R 20406612 intron Gfrl - chr3R_4_20405001 chr3R_20405001 RAL-642 1050 chr3R 20506586 20506616 chr3R 20507389 20507419 BS 5 803 1.5 2.0 1.8 1.8 833 chr3R 20506586 intergenic Or92a + chr3R 20507002 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-642 1051 chr3R 20516540 20516567 chr3R 20516896 20516914 6 352 3.0 3.5 3.2 1.4 374 chr3R 20516540 intergenic not near genes chr3R 20516727 intergenic not near genes chr3R 20516914 intergenic not near genes chr3R_6_20515001 chr3R_20515001 RAL-642 1052 chr3R 20573298 20573317 chr3R 20573499 20573517 7 200 1.5 1.0 1.2 3.2 219 chr3R 20573298 intergenic CG5191 + chr3R 20573408 intergenic CG5191 + chr3R 20573517 intergenic not near genes chr3R_7_20570001 chr3R_20570001 RAL-642 1053 chr3R 20644648 20644681 chr3R 20644725 20644758 4 77 2.0 2.5 2.2 1.2 110 chr3R 20644648 3` UTR GluRIIE - chr3R 20644703 3` UTR GluRIIE - chr3R 20644758 3` UTR GluRIIE - chr3R_4_20640001 chr3R_20640001 RAL-642 1054 chr3R 20722852 20722875 chr3R 20722979 20723002 7 125 5.0 2.0 3.5 1.6 150 chr3R 20722852 intergenic not near genes chr3R 20722927 intergenic not near genes chr3R 20723002 intergenic not near genes chr3R_7_20720001 chr3R_20720001 RAL-642 1055 chr3R 20733286 20733320 chr3R 20733360 20733396 6 75 2.0 4.0 3.0 1.5 110 chr3R 20733286 intergenic not near genes chr3R 20733341 intergenic not near genes chr3R 20733396 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-642 1056 chr3R 20744367 20744403 chr3R 20744507 20744542 9 140 2.5 4.5 3.5 2.0 175 chr3R 20744367 intron,exon CG42322 +,CG31200 - chr3R 20744454 intron,exon CG42322 +,CG31200 - chr3R 20744542 intron,exon CG42322 +,CG31200 - chr3R_9_20740001 chr3R_20740001 RAL-642 1057 chr3R 20854486 20854512 chr3R 20859276 20859302 Doc 6 4789 9.0 4.0 6.5 0.8 4816 chr3R 20854486 intron Ir93a - chr3R 20856894 intron Ir93a - chr3R 20859302 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-642 1058 chr3R 20870251 20870282 chr3R 20870336 20870367 8 83 3.0 3.0 3.0 2.0 116 chr3R 20870251 intergenic not near genes chr3R 20870309 intergenic not near genes chr3R 20870367 intergenic not near genes chr3R_8_20870001 chr3R_20870001 RAL-642 1059 chr3R 20901662 20901685 chr3R 20901765 20901788 5 102 3.0 1.5 2.2 1.6 126 chr3R 20901662 intergenic CG5621 + chr3R 20901725 intergenic CG5621 + chr3R 20901788 intergenic CG5621 + chr3R_5_20900001 chr3R_20900001 RAL-642 1060 chr3R 20994953 20994975 chr3R 20995039 20995058 4 82 1.0 2.0 1.5 1.6 105 chr3R 20994953 intron Calx + chr3R 20995006 intron Calx + chr3R 20995058 intron Calx + chr3R_4_20995001 chr3R_20995001 RAL-642 1061 chr3R 21014012 21014029 chr3R 21014089 21014105 5 77 3.0 0.5 1.8 1.8 93 chr3R 21014012 3` UTR Calx + chr3R 21014058 3` UTR Calx + chr3R 21014105 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-642 1062 chr3R 21052328 21052360 chr3R 21052577 21052609 9 248 1.5 0.5 1.0 4.5 281 chr3R 21052328 intron Mvl - chr3R 21052468 intron Mvl - chr3R 21052609 intron Mvl - chr3R_9_21050001 chr3R_21050001 RAL-642 1063 chr3R 21141673 21141707 chr3R 21150154 21150158 Tirant 4 8469 4.0 3.0 3.5 0.9 8485 chr3R 21141673 intron SNF4Agamma + chr3R 21145916 intron SNF4Agamma + chr3R 21150158 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-642 1064 chr3R 21240446 21240477 chr3R 21240538 21240569 6 92 1.5 1.0 1.2 2.7 123 chr3R 21240446 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240569 intergenic not near genes chr3R_6_21240001 chr3R_21240001 RAL-642 1065 chr3R 21293202 21293232 chr3R 21293314 21293344 5 110 2.5 2.5 2.5 1.4 142 chr3R 21293202 intron SIFaR - chr3R 21293273 intron SIFaR - chr3R 21293344 intron SIFaR - chr3R_5_21290001 chr3R_21290001 RAL-642 1066 chr3R 21385937 21385963 chr3R 21386014 21386040 8 77 1.5 4.5 3.0 2.0 103 chr3R 21385937 intergenic not near genes chr3R 21385988 intergenic not near genes chr3R 21386040 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-642 1067 chr3R 21518259 21518270 chr3R 21518343 21518354 4 84 0.5 3.0 1.8 1.4 95 chr3R 21518259 intergenic not near genes chr3R 21518306 intergenic not near genes chr3R 21518354 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-642 1068 chr3R 21519998 21520136 chr3R 21520098 21520212 4 93 1.0 1.0 1.0 2.0 214 chr3R 21519998 intergenic not near genes chr3R 21520105 intergenic not near genes chr3R 21520212 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-642 1069 chr3R 21761130 21761154 chr3R 21768512 21768526 mdg1 9 7383 6.5 3.0 4.8 1.6 7396 chr3R 21761130 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768526 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-642 1070 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 12.5 12.5 12.5 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-642 1071 chr3R 21907534 21907534 chr3R 28831799 28831802 10 6924267 14.0 26.5 20.2 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-642 1072 chr3R 21907535 21907535 chr3R 28831799 28831802 38 6924266 14.0 26.5 20.2 1.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-642 1073 chr3R 21907536 21907536 chr3R 28831801 28831802 43 6924266 14.0 25.5 19.8 2.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-642 1074 chr3R 21952137 21952170 chr3R 21952222 21952255 6 85 1.5 3.5 2.5 1.7 118 chr3R 21952137 intron Eip93F + chr3R 21952196 intron Eip93F + chr3R 21952255 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-642 1075 chr3R 22335842 22335859 chr3R 22335927 22335945 9 86 2.5 2.5 2.5 2.6 103 chr3R 22335842 intron CG5388 - chr3R 22335894 intron CG5388 - chr3R 22335945 intron CG5388 - chr3R_9_22335001 chr3R_22335001 RAL-642 1076 chr3R 22428577 22428607 chr3R 22428653 22428683 9 74 2.0 3.5 2.8 2.4 106 chr3R 22428577 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-642 1077 chr3R 22450544 22450577 chr3R 22453184 22453217 NOF 13 2637 2.5 5.5 4.0 2.6 2673 chr3R 22450544 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_13_22450001 chr3R_22450001 RAL-642 1078 chr3R 22503878 22503900 chr3R 22503956 22503980 7 79 4.0 3.5 3.8 1.5 102 chr3R 22503878 intron Octbeta1R + chr3R 22503929 intron Octbeta1R + chr3R 22503980 intron Octbeta1R + chr3R_7_22500001 chr3R_22500001 RAL-642 1079 chr3R 22591665 22591699 chr3R 22591744 22591779 5 75 0.5 1.5 1.0 2.5 114 chr3R 22591665 intron Efa6 + chr3R 22591722 intron Efa6 + chr3R 22591779 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-642 1080 chr3R 22684207 22684234 chr3R 22684283 22684310 6 76 2.0 3.0 2.5 1.7 103 chr3R 22684207 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684310 intergenic not near genes chr3R_6_22680001 chr3R_22680001 RAL-642 1081 chr3R 22711242 22711249 chr3R 22711318 22711322 4 75 0.5 6.0 3.2 1.0 80 chr3R 22711242 3` UTR wge - chr3R 22711282 3` UTR wge - chr3R 22711322 3` UTR wge - chr3R_4_22710001 chr3R_22710001 RAL-642 1082 chr3R 22755581 22755608 chr3R 22755669 22755696 8 87 1.5 1.5 1.5 3.2 115 chr3R 22755581 intron,intron CG7029 +,Usp12-46 + chr3R 22755638 intron,intron CG7029 +,Usp12-46 + chr3R 22755696 intron,intron CG7029 +,Usp12-46 + chr3R_8_22755001 chr3R_22755001 RAL-642 1083 chr3R 22769100 22769123 chr3R 22769177 22769199 5 77 2.5 6.0 4.2 1.0 99 chr3R 22769100 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769150 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_5_22765001 chr3R_22765001 RAL-642 1084 chr3R 22835815 22835841 chr3R 22835895 22835923 8 77 4.5 1.0 2.8 2.1 108 chr3R 22835815 intergenic not near genes chr3R 22835869 intergenic not near genes chr3R 22835923 intergenic not near genes chr3R_8_22835001 chr3R_22835001 RAL-642 1085 chr3R 22842386 22842420 chr3R 22842485 22842519 13 96 4.5 3.5 4.0 2.6 133 chr3R 22842386 intergenic not near genes chr3R 22842452 intergenic not near genes chr3R 22842519 intergenic not near genes chr3R_13_22840001 chr3R_22840001 RAL-642 1086 chr3R 22871436 22871457 chr3R 22871569 22871590 4 133 5.0 4.0 4.5 0.7 154 chr3R 22871436 intergenic not near genes chr3R 22871513 intergenic not near genes chr3R 22871590 intergenic not near genes chr3R_4_22870001 chr3R_22870001 RAL-642 1087 chr3R 22927876 22927902 chr3R 22927971 22927997 6 93 1.5 6.5 4.0 1.2 121 chr3R 22927876 intron klg + chr3R 22927936 intron klg + chr3R 22927997 intron klg + chr3R_6_22925001 chr3R_22925001 RAL-642 1088 chr3R 23064182 23064190 chr3R 23064291 23064298 4 106 5.0 5.0 5.0 0.7 116 chr3R 23064182 exon CG17111 - chr3R 23064240 intron CG17111 - chr3R 23064298 exon CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-642 1089 chr3R 23064876 23064903 chr3R 23064967 23064994 5 91 0.0 1.5 0.8 2.8 118 chr3R 23064876 intron CG17111 - chr3R 23064935 intron CG17111 - chr3R 23064994 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-642 1090 chr3R 23073655 23073687 chr3R 23073744 23073776 11 88 2.0 2.5 2.2 3.4 121 chr3R 23073655 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073776 intron CG13830 - chr3R_11_23070001 chr3R_23070001 RAL-642 1091 chr3R 23100154 23100441 chr3R 23100241 23100522 15 83 3.5 1.0 2.2 4.7 368 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100338 intron,exon CG13830 -,CG6738 + chr3R 23100522 intron,exon CG13830 -,CG6738 + chr3R_15_23100001 chr3R_23100001 RAL-642 1092 chr3R 23307653 23307682 chr3R 23307822 23307850 4 169 1.0 0.0 0.5 2.7 197 chr3R 23307653 intron pnt - chr3R 23307752 intron pnt - chr3R 23307850 intron pnt - chr3R_4_23305001 chr3R_23305001 RAL-642 1093 chr3R 23335438 23335444 chr3R 23335516 23335522 4 78 4.5 2.0 3.2 1.0 84 chr3R 23335438 intron pnt - chr3R 23335480 intron pnt - chr3R 23335522 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-642 1094 chr3R 23363303 23363315 chr3R 23363382 23363385 4 76 3.0 1.0 2.0 1.3 82 chr3R 23363303 exon CG4408 - chr3R 23363344 exon CG4408 - chr3R 23363385 exon CG4408 - chr3R_4_23360001 chr3R_23360001 RAL-642 1095 chr3R 23421998 23422007 chr3R 23422064 23422092 4 74 2.5 3.0 2.8 1.1 94 chr3R 23421998 intron CG4374 - chr3R 23422045 intron CG4374 - chr3R 23422092 intron CG4374 - chr3R_4_23420001 chr3R_23420001 RAL-642 1096 chr3R 23558398 23558428 chr3R 23560179 23560180 Bari1 7 1777 1.0 2.0 1.5 2.8 1782 chr3R 23558398 intron beat-IV + chr3R 23559289 intron beat-IV + chr3R 23560180 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-642 1097 chr3R 23629454 23629474 chr3R 23629525 23629535 5 71 5.0 4.0 4.5 0.9 81 chr3R 23629454 intron CG31145 - chr3R 23629494 intron CG31145 - chr3R 23629535 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-642 1098 chr3R 23724891 23724910 chr3R 23724972 23724994 5 81 4.5 0.0 2.2 1.6 103 chr3R 23724891 intron CG10365 + chr3R 23724942 intron CG10365 + chr3R 23724994 intron CG10365 + chr3R_5_23720001 chr3R_23720001 RAL-642 1099 chr3R 23808477 23808502 chr3R 23808602 23808627 7 121 1.5 3.0 2.2 2.2 150 chr3R 23808477 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808552 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808627 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_7_23805001 chr3R_23805001 RAL-642 1100 chr3R 23944913 23944936 chr3R 23944997 23945014 12 84 1.5 5.0 3.2 2.9 101 chr3R 23944913 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945014 intron CG12268 - chr3R_12_23940001 chr3R_23940001 RAL-642 1101 chr3R 23949041 23949068 chr3R 23949117 23949145 4 71 4.0 0.5 2.2 1.2 104 chr3R 23949041 intergenic not near genes chr3R 23949093 intergenic not near genes chr3R 23949145 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-642 1102 chr3R 24015072 24015090 chr3R 24015134 24015156 7 71 1.5 0.5 1.0 3.5 84 chr3R 24015072 intron KrT95D - chr3R 24015114 intron KrT95D - chr3R 24015156 intron KrT95D - chr3R_7_24015001 chr3R_24015001 RAL-642 1103 chr3R 24076916 24076948 chr3R 24078383 24078415 hobo 9 1466 3.0 1.0 2.0 3.0 1499 chr3R 24076916 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-642 1104 chr3R 24207216 24207246 chr3R 24212292 24212322 flea 10 5076 8.0 3.5 5.8 1.5 5106 chr3R 24207216 intron twin - chr3R 24209769 intron twin - chr3R 24212322 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-642 1105 chr3R 21907534 21907535 chr3R 24389465 24389465 5 2481930 14.0 6.5 10.2 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-642 1106 chr3R 24426293 24426315 chr3R 24426550 24426572 8 256 4.0 1.0 2.5 2.3 279 chr3R 24426293 intron nAChRalpha1 - chr3R 24426432 intron nAChRalpha1 - chr3R 24426572 intron nAChRalpha1 - chr3R_8_24425001 chr3R_24425001 RAL-642 1107 chr3R 24434240 24434248 chr3R 24434318 24434326 6 78 3.0 1.5 2.2 1.9 86 chr3R 24434240 intron nAChRalpha1 - chr3R 24434283 intron nAChRalpha1 - chr3R 24434326 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-642 1108 chr3R 24441618 24441631 chr3R 24441900 24441913 6 282 9.5 0.0 4.8 1.0 295 chr3R 24441618 intron nAChRalpha1 - chr3R 24441766 intron nAChRalpha1 - chr3R 24441913 intron nAChRalpha1 - chr3R_6_24440001 chr3R_24440001 RAL-642 1109 chr3R 24493294 24493307 chr3R 24493513 24493536 BS 4 226 1.0 2.5 1.8 1.4 242 chr3R 24493294 intergenic not near genes chr3R 24493415 intergenic not near genes chr3R 24493536 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-642 1110 chr3R 24525805 24525837 chr3R 24525885 24525917 5 80 2.0 1.0 1.5 2.0 112 chr3R 24525805 intron CG13618 + chr3R 24525861 intron CG13618 + chr3R 24525917 intron CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-642 1111 chr3R 24624378 24624388 chr3R 24624466 24624474 5 88 1.0 2.0 1.5 2.0 96 chr3R 24624378 intron Syx18 - chr3R 24624426 intron Syx18 - chr3R 24624474 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-642 1112 chr3R 24792034 24792041 chr3R 24792108 24792122 5 80 0.0 4.0 2.0 1.7 88 chr3R 24792034 intron Ets96B + chr3R 24792078 intron Ets96B + chr3R 24792122 intron Ets96B + chr3R_5_24790001 chr3R_24790001 RAL-642 1113 chr3R 24842102 24842135 chr3R 24842187 24842219 10 86 4.5 2.0 3.2 2.4 117 chr3R 24842102 5` UTR Esp + chr3R 24842160 5` UTR Esp + chr3R 24842219 5` UTR Esp + chr3R_10_24840001 chr3R_24840001 RAL-642 1114 chr3R 25302133 25302157 chr3R 25302349 25302373 5 216 11.5 8.5 10.0 0.5 240 chr3R 25302133 exon CG13659 + chr3R 25302253 exon CG13659 + chr3R 25302373 intergenic CG13659 +,CG31370 + chr3R_5_25300001 chr3R_25300001 RAL-642 1115 chr3R 25407751 25407785 chr3R 25409510 25409543 8 1757 2.5 0.5 1.5 3.2 1792 chr3R 25407751 intron Fur1 - chr3R 25408647 intron Fur1 - chr3R 25409543 intron Fur1 - chr3R_8_25405001 chr3R_25405001 RAL-642 1116 chr3R 25612576 25612597 chr3R 25612671 25612693 9 96 3.0 5.5 4.2 1.7 117 chr3R 25612576 intron Npl4 - chr3R 25612634 intron Npl4 - chr3R 25612693 intron Npl4 - chr3R_9_25610001 chr3R_25610001 RAL-642 1117 chr3R 25615601 25615630 chr3R 25615692 25615722 10 89 3.0 2.0 2.5 2.9 121 chr3R 25615601 intron Npl4 - chr3R 25615662 intron Npl4 - chr3R 25615722 intron Npl4 - chr3R_10_25615001 chr3R_25615001 RAL-642 1118 chr3R 25669075 25669096 chr3R 25669169 25669190 10 93 0.0 2.5 1.2 4.5 115 chr3R 25669075 intron Lgr3 + chr3R 25669132 intron Lgr3 + chr3R 25669190 intron Lgr3 + chr3R_10_25665001 chr3R_25665001 RAL-642 1119 chr3R 25765890 25765912 chr3R 25765955 25765966 7 71 7.0 2.5 4.8 1.2 76 chr3R 25765890 intergenic not near genes chr3R 25765928 intergenic not near genes chr3R 25765966 intergenic not near genes chr3R_7_25765001 chr3R_25765001 RAL-642 1120 chr3R 25832704 25832719 chr3R 25841886 25841888 roo 5 9179 5.5 2.5 4.0 1.0 9184 chr3R 25832704 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841888 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-642 1121 chr3R 25864300 25864333 chr3R 25865278 25865311 5 978 2.5 2.0 2.2 1.6 1011 chr3R 25864300 intron CG5890 + chr3R 25864806 intron CG5890 + chr3R 25865311 intron CG5890 + chr3R_5_25860001 chr3R_25860001 RAL-642 1122 chr3R 26010188 26010209 chr3R 26010249 26010286 6 71 2.0 4.5 3.2 1.4 98 chr3R 26010188 intergenic not near genes chr3R 26010237 intergenic not near genes chr3R 26010286 intergenic not near genes chr3R_6_26010001 chr3R_26010001 RAL-642 1123 chr3R 26038968 26038988 chr3R 26039104 26039125 5 137 2.5 1.0 1.8 1.8 157 chr3R 26038968 intergenic not near genes chr3R 26039046 intergenic not near genes chr3R 26039125 intergenic not near genes chr3R_5_26035001 chr3R_26035001 RAL-642 1124 chr3R 26121957 26121981 chr3R 26122054 26122078 6 96 0.0 3.0 1.5 2.4 121 chr3R 26121957 intron CG31324 + chr3R 26122018 intron CG31324 + chr3R 26122078 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-642 1125 chr3R 26241255 26241277 chr3R 26241344 26241368 6 90 2.5 2.5 2.5 1.7 113 chr3R 26241255 intron CR42745 + chr3R 26241312 intron CR42745 + chr3R 26241368 intron CR42745 + chr3R_6_26240001 chr3R_26240001 RAL-642 1126 chr3R 26265817 26265847 chr3R 26265904 26265935 9 88 4.0 4.5 4.2 1.7 118 chr3R 26265817 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265935 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-642 1127 chr3R 26292106 26292130 chr3R 26292186 26292210 6 80 1.5 2.5 2.0 2.0 104 chr3R 26292106 intergenic not near genes chr3R 26292158 intergenic not near genes chr3R 26292210 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-642 1128 chr3R 26482371 26482389 chr3R 26482434 26482434 8 62 3.5 3.0 3.2 1.9 63 chr3R 26482371 intron plum - chr3R 26482402 intron plum - chr3R 26482434 intron plum - chr3R_8_26480001 chr3R_26480001 RAL-642 1129 chr3R 26510524 26510534 chr3R 26519579 26519588 roo 4 9055 1.5 2.0 1.8 1.4 9064 chr3R 26510524 intron plum - chr3R 26515056 intron plum - chr3R 26519588 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-642 1130 chr3R 26575006 26575032 chr3R 26575085 26575109 12 78 3.5 0.0 1.8 4.3 103 chr3R 26575006 exon scrib + chr3R 26575058 intron scrib + chr3R 26575109 intron scrib + chr3R_12_26575001 chr3R_26575001 RAL-642 1131 chr3R 26641638 26641660 chr3R 26641723 26641742 6 86 4.0 3.5 3.8 1.2 104 chr3R 26641638 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641742 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-642 1132 chr3R 26642750 26642761 chr3R 26643141 26643155 jockey 4 393 2.5 1.0 1.8 1.4 405 chr3R 26642750 intergenic not near genes chr3R 26642952 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-642 1133 chr3R 26713858 26713886 chr3R 26713942 26713957 7 81 6.0 1.0 3.5 1.6 99 chr3R 26713858 5` UTR amon - chr3R 26713908 5` UTR amon - chr3R 26713957 5` UTR amon - chr3R_7_26710001 chr3R_26710001 RAL-642 1134 chr3R 26788932 26788963 chr3R 26789013 26789036 16 78 2.0 6.0 4.0 3.2 104 chr3R 26788932 intergenic not near genes chr3R 26788984 intergenic not near genes chr3R 26789036 intergenic not near genes chr3R_16_26785001 chr3R_26785001 RAL-642 1135 chr3R 26810564 26810586 chr3R 26811049 26811071 roo 4 484 0.5 4.0 2.2 1.2 507 chr3R 26810564 intron Tl + chr3R 26810818 intron Tl + chr3R 26811071 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-642 1136 chr3R 27007410 27007428 chr3R 27016540 27016560 roo 4 9133 1.5 1.5 1.5 1.6 9150 chr3R 27007410 intron RYa-R + chr3R 27011985 intron RYa-R + chr3R 27016560 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-642 1137 chr3R 27043245 27043275 chr3R 27043433 27043463 6 188 0.5 1.0 0.8 3.3 218 chr3R 27043245 intron RYa-R + chr3R 27043354 intron RYa-R + chr3R 27043463 intron RYa-R + chr3R_6_27040001 chr3R_27040001 RAL-642 1138 chr3R 27101240 27101263 chr3R 27101320 27101334 4 74 1.0 1.5 1.2 1.8 94 chr3R 27101240 intergenic CG17189 + chr3R 27101287 intergenic CG17189 + chr3R 27101334 intergenic CG17189 + chr3R_4_27100001 chr3R_27100001 RAL-642 1139 chr3R 27140521 27140526 chr3R 27148131 27148136 412 6 7609 9.0 3.0 6.0 0.9 7615 chr3R 27140521 intron CG6051 - chr3R 27144328 intron CG6051 - chr3R 27148136 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-642 1140 chr3R 27140530 27140545 chr3R 27148129 27148144 412 8 7604 5.5 2.5 4.0 1.6 7614 chr3R 27140530 intron CG6051 - chr3R 27144337 intron CG6051 - chr3R 27148144 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-642 1141 chr3R 27315992 27316013 chr3R 27316068 27316089 10 76 1.5 1.0 1.2 4.5 97 chr3R 27315992 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316089 exon CG3339 - chr3R_10_27315001 chr3R_27315001 RAL-642 1142 chr3R 27327971 27327983 chr3R 27328290 27328303 5 319 3.0 4.5 3.8 1.0 332 chr3R 27327971 intergenic not near genes chr3R 27328137 intergenic not near genes chr3R 27328303 intergenic not near genes chr3R_5_27325001 chr3R_27325001 RAL-642 1143 chr3R 27339390 27339404 chr3R 27339495 27339509 7 105 1.0 1.5 1.2 3.2 119 chr3R 27339390 intergenic not near genes chr3R 27339450 intergenic not near genes chr3R 27339509 intergenic not near genes chr3R_7_27335001 chr3R_27335001 RAL-642 1144 chr3R 27456134 27456166 chr3R 27456221 27456253 12 86 1.0 1.0 1.0 6.0 119 chr3R 27456134 intergenic not near genes chr3R 27456194 intergenic not near genes chr3R 27456253 intergenic not near genes chr3R_12_27455001 chr3R_27455001 RAL-642 1145 chr3R 27511841 27511867 chr3R 27511974 27512000 8 132 3.5 2.0 2.8 2.1 159 chr3R 27511841 intergenic not near genes chr3R 27511920 intergenic not near genes chr3R 27512000 intergenic not near genes chr3R_8_27510001 chr3R_27510001 RAL-642 1146 chr3R 27578484 27578508 chr3R 27578571 27578597 7 89 4.5 4.0 4.2 1.3 113 chr3R 27578484 intron wdb - chr3R 27578540 intron wdb - chr3R 27578597 intron wdb - chr3R_7_27575001 chr3R_27575001 RAL-642 1147 chr3R 27595052 27595083 chr3R 27595134 27595166 6 82 2.0 2.0 2.0 2.0 114 chr3R 27595052 intron CG5639 - chr3R 27595109 intron CG5639 - chr3R 27595166 intron CG5639 - chr3R_6_27595001 chr3R_27595001 RAL-642 1148 chr3R 27705362 27705392 chr3R 27705442 27705472 5 78 2.5 4.5 3.5 1.1 110 chr3R 27705362 exon CG12428 - chr3R 27705417 intron CG12428 - chr3R 27705472 exon CG12428 - chr3R_5_27705001 chr3R_27705001 RAL-642 1149 chr3R 27799949 27799955 chr3R 27800027 27800037 4 81 1.5 2.0 1.8 1.4 88 chr3R 27799949 intron CG34353 - chr3R 27799993 intron CG34353 - chr3R 27800037 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-642 1150 chr3R 27800706 27800715 chr3R 27800787 27800810 5 90 3.5 4.0 3.8 1.0 104 chr3R 27800706 intron CG34353 - chr3R 27800758 intron CG34353 - chr3R 27800810 intron CG34353 - chr3R_5_27800001 chr3R_27800001 RAL-642 1151 chr3R 27813822 27813843 chr3R 27813926 27813947 9 104 2.0 0.0 1.0 4.5 125 chr3R 27813822 intron CG34353 - chr3R 27813884 intron CG34353 - chr3R 27813947 intron CG34353 - chr3R_9_27810001 chr3R_27810001 RAL-642 1152 chr3R 27862956 27862985 chr3R 27868261 27868285 Transpac 6 5304 2.0 1.0 1.5 2.4 5329 chr3R 27862956 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-642 1153 chr3R 27875706 27875729 chr3R 27882761 27882784 297 4 7054 3.0 2.5 2.8 1.1 7078 chr3R 27875706 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-642 1154 chr3R 27982374 27982409 chr3R 27982467 27982496 7 92 2.0 3.0 2.5 2.0 122 chr3R 27982374 intron betaTub97EF - chr3R 27982435 intron betaTub97EF - chr3R 27982496 intron betaTub97EF - chr3R_7_27980001 chr3R_27980001 RAL-642 1155 chr3R 28054448 28054475 chr3R 28054517 28054538 7 72 0.5 2.5 1.5 2.8 90 chr3R 28054448 intron CG34362 + chr3R 28054493 intron CG34362 + chr3R 28054538 intron CG34362 + chr3R_7_28050001 chr3R_28050001 RAL-642 1156 chr3R 28068492 28068527 chr3R 28073934 28073969 I-element 10 5442 0.5 4.5 2.5 2.9 5477 chr3R 28068492 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073969 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-642 1157 chr3R 28103323 28103356 chr3R 28103416 28103444 9 90 2.0 2.0 2.0 3.0 121 chr3R 28103323 intergenic not near genes chr3R 28103384 intergenic not near genes chr3R 28103444 intergenic not near genes chr3R_9_28100001 chr3R_28100001 RAL-642 1158 chr3R 28132490 28132524 chr3R 28132572 28132606 8 77 0.5 1.0 0.8 4.4 116 chr3R 28132490 intergenic not near genes chr3R 28132548 intergenic not near genes chr3R 28132606 intergenic not near genes chr3R_8_28130001 chr3R_28130001 RAL-642 1159 chr3R 28173672 28173701 chr3R 28181102 28181130 mdg1 5 7430 0.0 1.5 0.8 2.8 7458 chr3R 28173672 intron CG34354 + chr3R 28177401 intron CG34354 + chr3R 28181130 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-642 1160 chr3R 28223281 28223286 chr3R 28223367 28223372 5 85 2.0 0.0 1.0 2.5 91 chr3R 28223281 intron CG34354 + chr3R 28223326 intron CG34354 + chr3R 28223372 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-642 1161 chr3R 28253347 28253371 chr3R 28255857 28255881 jockey 9 2509 2.0 3.5 2.8 2.4 2534 chr3R 28253347 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-642 1162 chr3R 28352514 28352542 chr3R 28352854 28352882 10 340 2.5 5.5 4.0 2.0 368 chr3R 28352514 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352882 exon Or98b + chr3R_10_28350001 chr3R_28350001 RAL-642 1163 chr3R 28407704 28407740 chr3R 28407790 28407826 10 85 2.0 1.0 1.5 4.0 122 chr3R 28407704 intergenic not near genes chr3R 28407765 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_10_28405001 chr3R_28405001 RAL-642 1164 chr3R 28484353 28484374 chr3R 28486270 28486292 26 1918 22.0 35.5 28.8 0.9 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_26_28485001 chr3R_28485001 RAL-642 1165 chr3R 28599377 28599401 chr3R 28599524 28599545 4 146 1.0 0.5 0.8 2.2 168 chr3R 28599377 intergenic Noa36 - chr3R 28599461 intergenic Noa36 - chr3R 28599545 intergenic Noa36 - chr3R_4_28595001 chr3R_28595001 RAL-642 1166 chr3R 28652495 28652521 chr3R 28652571 28652597 8 76 2.5 0.0 1.2 3.6 102 chr3R 28652495 intergenic not near genes chr3R 28652546 intergenic not near genes chr3R 28652597 intergenic not near genes chr3R_8_28650001 chr3R_28650001 RAL-642 1167 chr3R 28702934 28702957 chr3R 28703017 28703029 5 79 2.0 6.5 4.2 1.0 95 chr3R 28702934 intron htt + chr3R 28702982 intron htt + chr3R 28703029 intron htt + chr3R_5_28700001 chr3R_28700001 RAL-642 1168 chr3R 28792873 28792904 chr3R 28797968 28797993 jockey 10 5089 4.0 5.5 4.8 1.7 5120 chr3R 28792873 intergenic not near genes chr3R 28795433 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_10_28795001 chr3R_28795001 RAL-642 1169 chr3R 21907534 21907536 chr3R 28831798 28831802 74 6924267 14.0 26.0 20.0 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_74_25365001 chr3R_25365001 RAL-642 1170 chr3R 28892342 28892365 chr3R 28892402 28892436 8 72 2.5 3.5 3.0 2.0 94 chr3R 28892342 intron Doa + chr3R 28892389 intron Doa + chr3R 28892436 intron Doa + chr3R_8_28890001 chr3R_28890001 RAL-642 1171 chr3R 21907534 21907536 chr3R 29013339 29013340 13 7105805 14.0 15.0 14.5 0.8 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_13_25460001 chr3R_25460001 RAL-642 1172 chr3R 29032752 29032777 chr3R 29032829 29032838 4 73 1.0 0.0 0.5 2.7 86 chr3R 29032752 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032795 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032838 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-642 1173 chr3R 29079378 29079406 chr3R 29080750 29080778 NOF 6 1371 3.0 1.5 2.2 1.9 1400 chr3R 29079378 intron CG11873 + chr3R 29080078 intron CG11873 + chr3R 29080778 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-642 1174 chr3R 29179015 29179043 chr3R 29179100 29179127 9 83 6.5 1.5 4.0 1.8 112 chr3R 29179015 intron CG14509 - chr3R 29179071 intron CG14509 - chr3R 29179127 intron CG14509 - chr3R_9_29175001 chr3R_29175001 RAL-642 1175 chr3R 29213059 29213092 chr3R 29213142 29213175 10 83 2.5 1.0 1.8 3.6 116 chr3R 29213059 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_10_29210001 chr3R_29210001 RAL-642 1176 chr3R 29237247 29237280 chr3R 29239268 29239301 8 2017 14.5 4.0 9.2 0.8 2054 chr3R 29237247 exon CG11951 - chr3R 29238274 intron CG11951 - chr3R 29239301 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-642 1177 chr3R 29256267 29256299 chr3R 29256347 29256372 13 77 5.0 2.0 3.5 2.9 105 chr3R 29256267 intergenic CG45544 +,stg - chr3R 29256320 intergenic CG45544 + chr3R 29256372 intergenic CG45544 + chr3R_13_29255001 chr3R_29255001 RAL-642 1178 chr3R 29335387 29335411 chr3R 29335529 29335546 5 140 4.0 4.5 4.2 1.0 159 chr3R 29335387 intergenic not near genes chr3R 29335466 intergenic not near genes chr3R 29335546 intergenic not near genes chr3R_5_29335001 chr3R_29335001 RAL-642 1179 chr3R 29344112 29344148 chr3R 29344300 29344302 8 180 2.0 3.0 2.5 2.3 190 chr3R 29344112 intergenic not near genes chr3R 29344207 intergenic not near genes chr3R 29344302 intergenic not near genes chr3R_8_29340001 chr3R_29340001 RAL-642 1180 chr3R 29351732 29351751 chr3R 29351817 29351836 4 85 3.5 2.5 3.0 1.0 104 chr3R 29351732 intergenic not near genes chr3R 29351784 intergenic not near genes chr3R 29351836 intergenic not near genes chr3R_4_29350001 chr3R_29350001 RAL-642 1181 chr3R 29355961 29355990 chr3R 29356038 29356070 4 72 0.0 1.0 0.5 2.7 109 chr3R 29355961 intergenic CR45547 - chr3R 29356016 intergenic CR45547 - chr3R 29356070 intergenic CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-642 1182 chr3R 29406628 29406648 chr3R 29407898 29407903 jockey 7 1278 3.5 3.0 3.2 1.7 1275 chr3R 29406628 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407903 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-642 1183 chr3R 29447818 29447845 chr3R 29447925 29447952 10 105 3.0 1.5 2.2 3.1 134 chr3R 29447818 intron Ptp99A + chr3R 29447885 intron Ptp99A + chr3R 29447952 intron Ptp99A + chr3R_10_29445001 chr3R_29445001 RAL-642 1184 chr3R 29453759 29453785 chr3R 29453835 29453861 5 75 0.0 1.5 0.8 2.8 102 chr3R 29453759 intron Ptp99A + chr3R 29453810 intron Ptp99A + chr3R 29453861 intron Ptp99A + chr3R_5_29450001 chr3R_29450001 RAL-642 1185 chr3R 29472008 29472026 chr3R 29472101 29472118 6 91 3.0 2.5 2.8 1.6 110 chr3R 29472008 intron Ptp99A + chr3R 29472063 intron Ptp99A + chr3R 29472118 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-642 1186 chr3R 29539431 29539461 chr3R 29539507 29539537 7 76 1.5 0.0 0.8 3.9 106 chr3R 29539431 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539537 intergenic not near genes chr3R_7_29535001 chr3R_29535001 RAL-642 1187 chr3R 29546756 29546782 chr3R 29546831 29546856 8 75 3.5 2.0 2.8 2.1 100 chr3R 29546756 intergenic not near genes chr3R 29546806 intergenic not near genes chr3R 29546856 intergenic not near genes chr3R_8_29545001 chr3R_29545001 RAL-642 1188 chr3R 29550258 29550289 chr3R 29550339 29550346 5 76 2.0 2.0 2.0 1.7 88 chr3R 29550258 intergenic not near genes chr3R 29550302 intergenic not near genes chr3R 29550346 intergenic not near genes chr3R_5_29550001 chr3R_29550001 RAL-642 1189 chr3R 29624954 29624968 chr3R 29625030 29625042 6 76 4.0 2.0 3.0 1.5 88 chr3R 29624954 intergenic not near genes chr3R 29624998 intergenic not near genes chr3R 29625042 intergenic not near genes chr3R_6_29620001 chr3R_29620001 RAL-642 1190 chr3R 29631526 29631562 chr3R 29631608 29631640 14 77 2.0 2.5 2.2 4.4 114 chr3R 29631526 3` UTR Dop1R2 - chr3R 29631583 3` UTR Dop1R2 - chr3R 29631640 3` UTR Dop1R2 - chr3R_14_29630001 chr3R_29630001 RAL-642 1191 chr3R 29738263 29738298 chr3R 29739729 29739739 hobo 6 1461 2.0 1.5 1.8 2.1 1476 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739001 intron CG1969 + chr3R 29739739 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-642 1192 chr3R 29882022 29882041 chr3R 29891179 29891198 roo 6 9157 3.0 4.0 3.5 1.3 9176 chr3R 29882022 intron CG31038 + chr3R 29886610 intron CG31038 + chr3R 29891198 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-642 1193 chr3R 29950574 29950596 chr3R 29950651 29950673 9 74 2.0 1.0 1.5 3.6 99 chr3R 29950574 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950673 intergenic TkR99D - chr3R_9_29950001 chr3R_29950001 RAL-642 1194 chr3R 29963476 29963505 chr3R 29963578 29963607 7 101 2.0 0.5 1.2 3.2 131 chr3R 29963476 intron TkR99D - chr3R 29963542 intron TkR99D - chr3R 29963607 intron TkR99D - chr3R_7_29960001 chr3R_29960001 RAL-642 1195 chr3R 30032168 30032179 chr3R 30032247 30032258 5 79 2.5 2.5 2.5 1.4 90 chr3R 30032168 intron Axn + chr3R 30032213 intron Axn + chr3R 30032258 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-642 1196 chr3R 30075567 30075586 chr3R 30075656 30075675 8 89 0.0 3.0 1.5 3.2 108 chr3R 30075567 intron sima + chr3R 30075621 intron sima + chr3R 30075675 intron sima + chr3R_8_30075001 chr3R_30075001 RAL-642 1197 chr3R 30084864 30084885 chr3R 30086331 30086351 hobo 6 1466 0.0 2.5 1.2 2.7 1487 chr3R 30084864 intron sima + chr3R 30085608 intron sima + chr3R 30086351 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-642 1198 chr3R 30268248 30268448 chr3R 30268327 30268528 14 79 2.0 2.0 2.0 4.7 280 chr3R 30268248 intergenic not near genes chr3R 30268388 intergenic not near genes chr3R 30268528 intergenic not near genes chr3R_14_30265001 chr3R_30265001 RAL-642 1199 chr3R 30307124 30307149 chr3R 30307203 30307230 11 79 2.0 3.5 2.8 2.9 106 chr3R 30307124 intron hdc + chr3R 30307177 intron hdc + chr3R 30307230 intron hdc + chr3R_11_30305001 chr3R_30305001 RAL-642 1200 chr3R 30332029 30332055 chr3R 30332108 30332134 9 78 4.5 1.5 3.0 2.2 105 chr3R 30332029 intron hdc + chr3R 30332082 intron hdc + chr3R 30332134 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-642 1201 chr3R 30359356 30359387 chr3R 30359488 30359519 4 132 1.0 2.5 1.8 1.4 163 chr3R 30359356 intron hdc + chr3R 30359438 intron hdc + chr3R 30359519 intron hdc + chr3R_4_30355001 chr3R_30355001 RAL-642 1202 chr3R 30396225 30396233 chr3R 30404491 30404497 roo 5 8266 0.5 4.0 2.2 1.6 8272 chr3R 30396225 intergenic not near genes chr3R 30400361 intergenic not near genes chr3R 30404497 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-642 1203 chr3R 30456398 30456424 chr3R 30456470 30456502 8 78 0.0 0.0 0.0 8.0 104 chr3R 30456398 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456502 3` UTR CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-642 1204 chr3R 30458010 30458048 chr3R 30458090 30458128 9 79 1.0 1.5 1.2 4.1 118 chr3R 30458010 intron CG2224 - chr3R 30458069 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-642 1205 chr3R 30480487 30480509 chr3R 30482953 30482977 jockey 5 2468 2.0 5.0 3.5 1.1 2490 chr3R 30480487 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-642 1206 chr3R 30627603 30627638 chr3R 30627682 30627718 13 76 2.0 4.0 3.0 3.2 115 chr3R 30627603 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_13_30625001 chr3R_30625001 RAL-642 1207 chr3R 30679520 30679548 chr3R 30686989 30687013 blood 8 7468 4.0 2.5 3.2 1.9 7493 chr3R 30679520 intergenic not near genes chr3R 30683266 intergenic not near genes chr3R 30687013 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-642 1208 chr3R 30690163 30690188 chr3R 30690245 30690272 12 81 1.0 4.5 2.8 3.2 109 chr3R 30690163 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690272 intergenic Spn100A + chr3R_12_30690001 chr3R_30690001 RAL-642 1209 chr3R 30818809 30818841 chr3R 30820374 30820406 1360 6 1565 1.5 3.0 2.2 1.9 1597 chr3R 30818809 intron cindr + chr3R 30819608 intron cindr + chr3R 30820406 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-642 1210 chr3R 30948074 30948107 chr3R 30948265 30948298 12 190 1.0 3.0 2.0 4.0 224 chr3R 30948074 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948298 intergenic not near genes chr3R_12_30945001 chr3R_30945001 RAL-642 1211 chr3R 30973988 30974019 chr3R 30974101 30974130 6 112 3.0 1.0 2.0 2.0 142 chr3R 30973988 intron 5-HT7 - chr3R 30974059 intron 5-HT7 - chr3R 30974130 intron 5-HT7 - chr3R_6_30970001 chr3R_30970001 RAL-642 1212 chr3R 30982595 30982613 chr3R 30982687 30982687 4 87 1.5 2.0 1.8 1.4 92 chr3R 30982595 intron 5-HT7 - chr3R 30982641 intron 5-HT7 - chr3R 30982687 intron 5-HT7 - chr3R_4_30980001 chr3R_30980001 RAL-642 1213 chr3R 31010669 31010699 chr3R 31010747 31010780 4 78 1.0 1.5 1.2 1.8 111 chr3R 31010669 intron 5-HT7 - chr3R 31010724 intron 5-HT7 - chr3R 31010780 intron 5-HT7 - chr3R_4_31010001 chr3R_31010001 RAL-642 1214 chr3R 31042111 31042138 chr3R 31042198 31042225 5 87 3.5 3.0 3.2 1.2 114 chr3R 31042111 intron CanA1 + chr3R 31042168 intron CanA1 + chr3R 31042225 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-642 1215 chr3R 31074242 31074261 chr3R 31081838 31081859 springer 6 7597 3.0 5.0 4.0 1.2 7617 chr3R 31074242 intron Sox100B + chr3R 31078050 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-642 1216 chr3R 31137166 31137176 chr3R 31137235 31137252 4 74 1.5 1.0 1.2 1.8 86 chr3R 31137166 intron Gycbeta100B + chr3R 31137209 intron Gycbeta100B + chr3R 31137252 intron Gycbeta100B + chr3R_4_31135001 chr3R_31135001 RAL-642 1217 chr3R 31265242 31265273 chr3R 31265322 31265353 9 78 1.0 1.5 1.2 4.1 111 chr3R 31265242 intergenic ppk24 + chr3R 31265298 intergenic ppk24 + chr3R 31265353 intergenic ppk24 + chr3R_9_31265001 chr3R_31265001 RAL-642 1218 chr3R 31413095 31413121 chr3R 31418289 31418318 copia 5 5195 3.0 1.0 2.0 1.7 5223 chr3R 31413095 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-642 1219 chr3R 31431107 31431131 chr3R 31431193 31431217 8 86 1.0 1.5 1.2 3.6 110 chr3R 31431107 intron Gprk2 + chr3R 31431162 intron Gprk2 + chr3R 31431217 intron Gprk2 + chr3R_8_31430001 chr3R_31430001 RAL-642 1220 chr3R 31448605 31448624 chr3R 31448681 31448700 4 76 5.5 2.0 3.8 0.8 95 chr3R 31448605 intron Gprk2 + chr3R 31448652 intron Gprk2 + chr3R 31448700 intron Gprk2 + chr3R_4_31445001 chr3R_31445001 RAL-642 1221 chr3R 31539862 31539882 chr3R 31539947 31539963 4 84 2.0 2.5 2.2 1.2 101 chr3R 31539862 intergenic not near genes chr3R 31539912 intergenic not near genes chr3R 31539963 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-642 1222 chr3R 31691530 31691564 chr3R 31696296 31696305 Doc 13 4759 3.5 4.0 3.8 2.7 4775 chr3R 31691530 intergenic not near genes chr3R 31693918 intergenic not near genes chr3R 31696305 intergenic not near genes chr3R_13_31690001 chr3R_31690001 RAL-642 1223 chr3R 31887574 31887604 chr3R 31887655 31887683 6 81 1.5 3.0 2.2 1.9 109 chr3R 31887574 intron heph - chr3R 31887628 intron heph - chr3R 31887683 intron heph - chr3R_6_31885001 chr3R_31885001 RAL-642 1224 chr3R 32010002 32010016 chr3R 32010127 32010134 6 123 1.5 3.0 2.2 1.9 132 chr3R 32010002 intron heph - chr3R 32010068 intron heph - chr3R 32010134 intron heph - chr3R_6_32010001 chr3R_32010001 RAL-642 1225 chr4 671610 671627 chr4 680191 680210 Tirant 5 8583 1.5 1.5 1.5 2.0 8600 chr4 671610 intron CG11360 + chr4 675910 intron CG11360 + chr4 680210 intron CG11360 + chr4_5_675001 chr4_675001 RAL-642 1226 chrX 428425 428452 chrX 434610 434632 3S18 4 6184 1.5 1.0 1.2 1.8 6207 chrX 428425 intron CG32816 - chrX 431528 intron CG32816 - chrX 434632 intron CG32816 - chrX_4_430001 chrX_430001 RAL-642 1227 chrX 551433 551450 chrX 558995 559011 412 6 7560 3.5 5.0 4.2 1.2 7578 chrX 551433 intron Appl + chrX 555222 intron Appl + chrX 559011 intron Appl + chrX_6_555001 chrX_555001 RAL-642 1228 chrX 551452 551455 chrX 558982 559016 412 4 7552 3.5 2.5 3.0 1.0 7564 chrX 551452 intron Appl + chrX 555234 intron Appl + chrX 559016 intron Appl + chrX_4_555001 chrX_555001 RAL-642 1229 chrX 726089 726112 chrX 726173 726196 5 82 0.5 2.5 1.5 2.0 107 chrX 726089 intron sdk + chrX 726142 intron sdk + chrX 726196 intron sdk + chrX_5_725001 chrX_725001 RAL-642 1230 chrX 802301 802319 chrX 802369 802395 7 70 2.0 4.5 3.2 1.7 94 chrX 802301 exon CG13359 - chrX 802348 exon CG13359 - chrX 802395 exon CG13359 - chrX_7_800001 chrX_800001 RAL-642 1231 chrX 827599 827631 chrX 835391 835423 roo 6 7790 3.0 3.0 3.0 1.5 7824 chrX 827599 intron CG43867 - chrX 831511 intron CG43867 - chrX 835423 intron CG43867 - chrX_6_830001 chrX_830001 RAL-642 1232 chrX 906708 906727 chrX 908492 908516 S-element 5 1788 5.5 4.5 5.0 0.8 1808 chrX 906708 intron CG43867 - chrX 907612 intron CG43867 - chrX 908516 intron CG43867 - chrX_5_905001 chrX_905001 RAL-642 1233 chrX 1051069 1051092 chrX 1051147 1051162 10 76 4.0 5.5 4.8 1.7 93 chrX 1051069 intron CR44779 + chrX 1051116 intron CR44779 + chrX 1051162 intron CR44779 + chrX_10_1050001 chrX_1050001 RAL-642 1234 chrX 1055537 1055567 chrX 1055952 1055981 4 415 2.0 3.0 2.5 1.1 444 chrX 1055537 intron CR44779 + chrX 1055759 intron CR44779 + chrX 1055981 intron CR44779 + chrX_4_1055001 chrX_1055001 RAL-642 1235 chrX 1153191 1153216 chrX 1153270 1153294 10 76 2.5 2.0 2.2 3.1 103 chrX 1153191 intergenic not near genes chrX 1153242 intergenic not near genes chrX 1153294 intergenic not near genes chrX_10_1150001 chrX_1150001 RAL-642 1236 chrX 1163304 1163310 chrX 1163382 1163385 4 77 5.0 2.0 3.5 0.9 81 chrX 1163304 intergenic CG34320 - chrX 1163344 intergenic CG34320 - chrX 1163385 intergenic CG34320 - chrX_4_1160001 chrX_1160001 RAL-642 1237 chrX 1163311 1163326 chrX 1163378 1163404 6 76 1.5 2.0 1.8 2.1 93 chrX 1163311 intergenic CG34320 - chrX 1163358 intergenic CG34320 - chrX 1163404 intergenic CG34320 - chrX_6_1160001 chrX_1160001 RAL-642 1238 chrX 1185559 1185595 chrX 1185638 1185674 6 79 2.5 3.0 2.8 1.6 115 chrX 1185559 intron CG14626 + chrX 1185616 intron CG14626 + chrX 1185674 intron CG14626 + chrX_6_1185001 chrX_1185001 RAL-642 1239 chrX 1272570 1272596 chrX 1272673 1272701 7 103 4.0 7.0 5.5 1.1 131 chrX 1272570 intron Atf3 - chrX 1272636 intron Atf3 - chrX 1272701 intron Atf3 - chrX_7_1270001 chrX_1270001 RAL-642 1240 chrX 1357778 1357808 chrX 1367948 1367978 Doc 6 10170 3.5 3.0 3.2 1.4 10200 chrX 1357778 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-642 1241 chrX 1428595 1428619 chrX 1428678 1428704 6 84 1.5 1.5 1.5 2.4 109 chrX 1428595 intron futsch + chrX 1428650 intron futsch + chrX 1428704 intron futsch + chrX_6_1425001 chrX_1425001 RAL-642 1242 chrX 1483608 1483627 chrX 1483728 1483749 4 122 6.5 8.5 7.5 0.5 141 chrX 1483608 intron inc + chrX 1483678 intron,3` UTR inc +,Nmdar2 - chrX 1483749 intron,3` UTR inc +,Nmdar2 - chrX_4_1480001 chrX_1480001 RAL-642 1243 chrX 1560659 1560687 chrX 1560750 1560780 6 88 2.0 2.0 2.0 2.0 121 chrX 1560659 intron Mur2B - chrX 1560720 intron Mur2B - chrX 1560780 intron Mur2B - chrX_6_1560001 chrX_1560001 RAL-642 1244 chrX 1627976 1628004 chrX 1635444 1635466 gtwin 7 7467 4.0 1.0 2.5 2.0 7490 chrX 1627976 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635466 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-642 1245 chrX 1954892 1954918 chrX 1962828 1962855 Stalker2 6 7931 3.0 2.5 2.8 1.6 7963 chrX 1954892 intron Hr4 + chrX 1958874 intron Hr4 + chrX 1962855 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-642 1246 chrX 1987486 1987504 chrX 1987590 1987608 4 104 3.0 2.0 2.5 1.1 122 chrX 1987486 intron Hr4 + chrX 1987547 intron Hr4 + chrX 1987608 intron Hr4 + chrX_4_1985001 chrX_1985001 RAL-642 1247 chrX 2399853 2399867 chrX 2408190 2408196 roo 6 8344 6.0 3.0 4.5 1.1 8343 chrX 2399853 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408196 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-642 1248 chrX 2578811 2578826 chrX 2578903 2578918 4 92 3.0 2.5 2.8 1.1 107 chrX 2578811 intergenic Pdfr +,Vha36-3 - chrX 2578864 intergenic Pdfr +,Vha36-3 - chrX 2578918 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-642 1249 chrX 2803500 2803529 chrX 2803643 2803670 5 142 2.5 1.5 2.0 1.7 170 chrX 2803500 intron kirre + chrX 2803585 intron kirre + chrX 2803670 intron kirre + chrX_5_2800001 chrX_2800001 RAL-642 1250 chrX 2888113 2888140 chrX 2888191 2888213 7 76 3.0 2.0 2.5 2.0 100 chrX 2888113 intron kirre + chrX 2888163 intron kirre + chrX 2888213 intron kirre + chrX_7_2885001 chrX_2885001 RAL-642 1251 chrX 3075649 3075666 chrX 3080955 3080972 Transpac 5 5306 0.5 1.5 1.0 2.5 5323 chrX 3075649 intron kirre + chrX 3078310 intron kirre + chrX 3080972 intron kirre + chrX_5_3075001 chrX_3075001 RAL-642 1252 chrX 3203468 3203496 chrX 3203667 3203695 7 199 0.0 3.0 1.5 2.8 227 chrX 3203468 intron dnc + chrX 3203582 intron dnc + chrX 3203695 intron dnc + chrX_7_3200001 chrX_3200001 RAL-642 1253 chrX 3306350 3306361 chrX 3306430 3306443 4 82 2.5 0.0 1.2 1.8 93 chrX 3306350 intron dnc + chrX 3306396 intron dnc + chrX 3306443 intron dnc + chrX_4_3305001 chrX_3305001 RAL-642 1254 chrX 3493095 3493116 chrX 3502251 3502274 roo 8 9157 3.5 1.5 2.5 2.3 9179 chrX 3493095 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502274 intron,intron CR44999 +,Gas8 - chrX_8_3495001 chrX_3495001 RAL-642 1255 chrX 3597548 3597580 chrX 3619716 3619744 roo 7 22167 2.5 1.5 2.0 2.3 22196 chrX 3597548 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-642 1256 chrX 3842325 3842353 chrX 3842566 3842594 pogo 5 241 2.5 3.5 3.0 1.2 269 chrX 3842325 intron ec + chrX 3842460 intron ec + chrX 3842594 intron ec + chrX_5_3840001 chrX_3840001 RAL-642 1257 chrX 3866114 3866129 chrX 3866191 3866207 5 78 3.0 2.0 2.5 1.4 93 chrX 3866114 intron yin - chrX 3866160 intron yin - chrX 3866207 intron yin - chrX_5_3865001 chrX_3865001 RAL-642 1258 chrX 3891147 3891175 chrX 3891265 3891278 9 115 3.0 1.0 2.0 3.0 131 chrX 3891147 intergenic CG42541 - chrX 3891212 intergenic CG42541 - chrX 3891278 intergenic CG42541 - chrX_9_3890001 chrX_3890001 RAL-642 1259 chrX 3981462 3981478 chrX 3981551 3981567 7 89 1.0 7.0 4.0 1.4 105 chrX 3981462 intergenic not near genes chrX 3981514 intergenic not near genes chrX 3981567 intergenic not near genes chrX_7_3980001 chrX_3980001 RAL-642 1260 chrX 4029528 4029555 chrX 4029716 4029745 10 188 3.0 1.0 2.0 3.3 217 chrX 4029528 intergenic not near genes chrX 4029636 intergenic not near genes chrX 4029745 intergenic not near genes chrX_10_4025001 chrX_4025001 RAL-642 1261 chrX 4175712 4175746 chrX 4175826 4175860 11 113 0.5 4.0 2.2 3.4 148 chrX 4175712 intron Fas2 - chrX 4175786 intron Fas2 - chrX 4175860 intron Fas2 - chrX_11_4175001 chrX_4175001 RAL-642 1262 chrX 4252950 4252973 chrX 4253032 4253061 6 86 2.5 2.5 2.5 1.7 111 chrX 4252950 intergenic CG15576 - chrX 4253006 intergenic CG15576 - chrX 4253061 intergenic CG15576 - chrX_6_4250001 chrX_4250001 RAL-642 1263 chrX 4515834 4515859 chrX 4515912 4515937 7 78 0.0 1.0 0.5 4.7 103 chrX 4515834 intron CR32773 - chrX 4515886 intron CR32773 - chrX 4515937 intron CR32773 - chrX_7_4515001 chrX_4515001 RAL-642 1264 chrX 4533557 4533580 chrX 4533646 4533669 7 86 3.0 1.5 2.2 2.2 112 chrX 4533557 intron,exon CR32773 -,CG3556 + chrX 4533613 intron,3` UTR CR32773 -,CG3556 + chrX 4533669 intron,3` UTR CR32773 -,CG3556 + chrX_7_4530001 chrX_4530001 RAL-642 1265 chrX 4693771 4693783 chrX 4693865 4693878 4 94 0.0 4.5 2.2 1.2 107 chrX 4693771 intron ctp + chrX 4693824 intron ctp + chrX 4693878 intron ctp + chrX_4_4690001 chrX_4690001 RAL-642 1266 chrX 4717355 4717382 chrX 4717874 4717901 9 518 1.5 2.5 2.0 3.0 546 chrX 4717355 intron Proc-R + chrX 4717628 intron Proc-R + chrX 4717901 intron Proc-R + chrX_9_4715001 chrX_4715001 RAL-642 1267 chrX 4731813 4731853 chrX 4736906 4736908 jockey 6 5086 3.0 0.5 1.8 2.1 5095 chrX 4731813 intergenic not near genes chrX 4734360 intergenic not near genes chrX 4736908 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-642 1268 chrX 4744800 4744810 chrX 4744884 4744895 5 85 6.5 5.0 5.8 0.7 95 chrX 4744800 intergenic not near genes chrX 4744848 intergenic not near genes chrX 4744895 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-642 1269 chrX 4763265 4763283 chrX 4763753 4763770 Stalker4 4 488 3.0 2.0 2.5 1.1 505 chrX 4763265 intergenic not near genes chrX 4763518 intergenic not near genes chrX 4763770 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-642 1270 chrX 4792382 4792405 chrX 4792815 4792838 jockey 9 432 3.0 5.5 4.2 1.7 456 chrX 4792382 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792838 intergenic not near genes chrX_9_4790001 chrX_4790001 RAL-642 1271 chrX 4827966 4828002 chrX 4835337 4835373 Stalker4 7 7360 2.0 3.0 2.5 2.0 7407 chrX 4827966 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835373 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-642 1272 chrX 5020889 5020910 chrX 5020982 5021003 14 92 1.5 2.0 1.8 5.0 114 chrX 5020889 intron CR44833 - chrX 5020946 intron CR44833 - chrX 5021003 intron CR44833 - chrX_14_5020001 chrX_5020001 RAL-642 1273 chrX 5096276 5096304 chrX 5103839 5103868 springer 4 7564 3.0 1.5 2.2 1.2 7592 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-642 1274 chrX 5134805 5134829 chrX 5134905 5134914 7 99 3.5 4.0 3.8 1.5 109 chrX 5134805 intron,intron CG15465 +,rg + chrX 5134860 intron,intron CG15465 +,rg + chrX 5134914 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-642 1275 chrX 5338708 5338731 chrX 5339961 5339978 jockey 4 1250 1.5 4.0 2.8 1.1 1270 chrX 5338708 intergenic not near genes chrX 5339343 intergenic not near genes chrX 5339978 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-642 1276 chrX 5345038 5345054 chrX 5345222 5345240 7 184 4.5 2.0 3.2 1.7 202 chrX 5345038 intron SK + chrX 5345139 intron SK + chrX 5345240 intron SK + chrX_7_5345001 chrX_5345001 RAL-642 1277 chrX 5442014 5442019 chrX 5442095 5442125 4 101 1.5 2.0 1.8 1.4 111 chrX 5442014 intergenic not near genes chrX 5442070 intergenic not near genes chrX 5442125 intergenic not near genes chrX_4_5440001 chrX_5440001 RAL-642 1278 chrX 5469610 5469641 chrX 5469779 5469810 7 163 0.5 1.0 0.8 3.9 200 chrX 5469610 intron SPR + chrX 5469710 intron SPR + chrX 5469810 intron SPR + chrX_7_5465001 chrX_5465001 RAL-642 1279 chrX 5473593 5473605 chrX 5473669 5473681 4 76 3.0 2.0 2.5 1.1 88 chrX 5473593 intron SPR + chrX 5473637 intron SPR + chrX 5473681 intron SPR + chrX_4_5470001 chrX_5470001 RAL-642 1280 chrX 5884164 5884184 chrX 5884405 5884424 pogo 5 240 1.0 1.0 1.0 2.5 260 chrX 5884164 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884424 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-642 1281 chrX 6118708 6118726 chrX 6118790 6118808 6 82 1.0 4.0 2.5 1.7 100 chrX 6118708 intron Ca-alpha1T - chrX 6118758 intron Ca-alpha1T - chrX 6118808 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-642 1282 chrX 6215349 6215368 chrX 6215432 6215451 4 83 1.5 4.0 2.8 1.1 102 chrX 6215349 intergenic not near genes chrX 6215400 intergenic not near genes chrX 6215451 intergenic not near genes chrX_4_6215001 chrX_6215001 RAL-642 1283 chrX 6216364 6216380 chrX 6216491 6216503 7 126 0.0 4.5 2.2 2.2 139 chrX 6216364 intergenic not near genes chrX 6216434 intergenic not near genes chrX 6216503 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-642 1284 chrX 6314191 6314220 chrX 6314283 6314312 9 91 2.5 2.0 2.2 2.8 121 chrX 6314191 intron CG15894 + chrX 6314252 intron CG15894 + chrX 6314312 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-642 1285 chrX 6335215 6335243 chrX 6337725 6337753 Tirant 10 2510 0.5 2.0 1.2 4.5 2538 chrX 6335215 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_10_6335001 chrX_6335001 RAL-642 1286 chrX 6392878 6392902 chrX 6397634 6397667 Doc 12 4763 0.5 1.0 0.8 6.7 4789 chrX 6392878 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397667 intergenic not near genes chrX_12_6395001 chrX_6395001 RAL-642 1287 chrX 6562817 6562851 chrX 6571299 6571333 Tirant 10 8481 3.5 2.5 3.0 2.5 8516 chrX 6562817 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571333 intron CG34417 + chrX_10_6565001 chrX_6565001 RAL-642 1288 chrX 6737524 6737537 chrX 6737606 6737618 4 81 4.0 1.5 2.8 1.1 94 chrX 6737524 intron CG3168 - chrX 6737571 intron CG3168 - chrX 6737618 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-642 1289 chrX 6737538 6737547 chrX 6737599 6737625 4 76 1.5 1.5 1.5 1.6 87 chrX 6737538 intron CG3168 - chrX 6737582 intron CG3168 - chrX 6737625 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-642 1290 chrX 6897590 6897699 chrX 6897661 6897809 4 97 0.5 0.5 0.5 2.7 219 chrX 6897590 intergenic not near genes chrX 6897700 intergenic not near genes chrX 6897809 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-642 1291 chrX 6897856 6897880 chrX 6897964 6897972 6 103 1.5 3.5 2.5 1.7 116 chrX 6897856 intergenic not near genes chrX 6897914 intergenic not near genes chrX 6897972 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-642 1292 chrX 7023605 7023630 chrX 7030995 7031017 Tabor 5 7389 2.0 1.5 1.8 1.8 7412 chrX 7023605 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031017 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-642 1293 chrX 7125250 7125278 chrX 7134404 7134437 roo 7 9158 0.5 1.0 0.8 3.9 9187 chrX 7125250 intergenic not near genes chrX 7129844 intergenic not near genes chrX 7134437 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-642 1294 chrX 7312449 7312462 chrX 7312833 7312852 5 389 3.5 2.5 3.0 1.2 403 chrX 7312449 intron,intron CR44357 -,CG1677 - chrX 7312650 intron,intron CR44357 -,CG1677 - chrX 7312852 intron,intron CR44357 -,CG1677 - chrX_5_7310001 chrX_7310001 RAL-642 1295 chrX 7488429 7488444 chrX 7488509 7488520 6 77 1.5 1.5 1.5 2.4 91 chrX 7488429 intergenic CR45534 + chrX 7488474 intergenic CR45534 +,CG43278 - chrX 7488520 intergenic CR45534 +,CG43278 - chrX_6_7485001 chrX_7485001 RAL-642 1296 chrX 7702904 7702932 chrX 7703343 7703354 jockey 9 434 1.5 3.0 2.2 2.8 450 chrX 7702904 intron CHES-1-like - chrX 7703129 intron CHES-1-like - chrX 7703354 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-642 1297 chrX 7784234 7784241 chrX 7784536 7784543 jockey 4 302 0.0 4.0 2.0 1.3 309 chrX 7784234 intergenic not near genes chrX 7784388 intergenic not near genes chrX 7784543 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-642 1298 chrX 7832445 7832457 chrX 7832534 7832546 4 89 1.0 3.0 2.0 1.3 101 chrX 7832445 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832546 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-642 1299 chrX 8012077 8012100 chrX 8012158 8012181 5 81 1.0 0.5 0.8 2.8 104 chrX 8012077 intron Tbh + chrX 8012129 intron Tbh + chrX 8012181 intron Tbh + chrX_5_8010001 chrX_8010001 RAL-642 1300 chrX 8085582 8085601 chrX 8085668 8085685 6 85 1.5 5.0 3.2 1.4 103 chrX 8085582 intron,5` UTR CG2256 -,CR45535 + chrX 8085634 intron,5` UTR CG2256 -,CR45535 + chrX 8085685 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-642 1301 chrX 8357702 8357736 chrX 8358038 8358072 6 336 1.0 0.0 0.5 4.0 370 chrX 8357702 intron nAChRalpha3 - chrX 8357887 intron nAChRalpha3 - chrX 8358072 intron nAChRalpha3 - chrX_6_8355001 chrX_8355001 RAL-642 1302 chrX 8371154 8371176 chrX 8371316 8371325 4 157 1.0 0.0 0.5 2.7 171 chrX 8371154 intergenic not near genes chrX 8371240 intergenic not near genes chrX 8371325 intergenic not near genes chrX_4_8370001 chrX_8370001 RAL-642 1303 chrX 8421469 8421494 chrX 8421561 8421586 11 91 3.0 2.5 2.8 2.9 117 chrX 8421469 intron Trf2 + chrX 8421528 intron Trf2 + chrX 8421586 intron Trf2 + chrX_11_8420001 chrX_8420001 RAL-642 1304 chrX 8585404 8585425 chrX 8585524 8585553 8 127 1.0 6.5 3.8 1.7 149 chrX 8585404 intron CG12065 + chrX 8585478 intron CG12065 + chrX 8585553 intron CG12065 + chrX_8_8585001 chrX_8585001 RAL-642 1305 chrX 8730460 8730472 chrX 8730536 8730544 5 73 0.0 5.5 2.8 1.3 84 chrX 8730460 intergenic not near genes chrX 8730502 intergenic not near genes chrX 8730544 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-642 1306 chrX 8922326 8922361 chrX 8922760 8922795 jockey 7 433 2.5 1.5 2.0 2.3 469 chrX 8922326 intron rdgA + chrX 8922560 intron rdgA + chrX 8922795 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-642 1307 chrX 9152076 9152109 chrX 9152159 9152192 5 83 1.0 0.5 0.8 2.8 116 chrX 9152076 intergenic dalao +,His3.3B - chrX 9152134 intergenic dalao +,His3.3B - chrX 9152192 intergenic dalao +,His3.3B - chrX_5_9150001 chrX_9150001 RAL-642 1308 chrX 9508140 9508162 chrX 9509658 9509678 jockey 4 1517 4.0 4.0 4.0 0.8 1538 chrX 9508140 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509678 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-642 1309 chrX 9923406 9923423 chrX 9923497 9923514 6 90 1.0 4.5 2.8 1.6 108 chrX 9923406 intergenic not near genes chrX 9923460 intergenic not near genes chrX 9923514 intergenic not near genes chrX_6_9920001 chrX_9920001 RAL-642 1310 chrX 10155461 10155485 chrX 10155742 10155766 7 281 1.0 1.0 1.0 3.5 305 chrX 10155461 intron CR44894 - chrX 10155614 intron CR44894 - chrX 10155766 intron CR44894 - chrX_7_10155001 chrX_10155001 RAL-642 1311 chrX 10321595 10321616 chrX 10321671 10321692 5 76 2.0 2.0 2.0 1.7 97 chrX 10321595 intron alpha-Man-I - chrX 10321644 intron alpha-Man-I - chrX 10321692 intron alpha-Man-I - chrX_5_10320001 chrX_10320001 RAL-642 1312 chrX 10446684 10446716 chrX 10446766 10446797 6 81 1.5 1.0 1.2 2.7 113 chrX 10446684 intron CG32683 - chrX 10446740 intron CG32683 - chrX 10446797 intron CG32683 - chrX_6_10445001 chrX_10445001 RAL-642 1313 chrX 10519110 10519146 chrX 10519226 10519263 16 116 1.0 0.5 0.8 8.9 153 chrX 10519110 intron spri - chrX 10519186 intron spri - chrX 10519263 intron spri - chrX_16_10515001 chrX_10515001 RAL-642 1314 chrX 10550335 10550358 chrX 10550413 10550436 4 78 0.5 2.0 1.2 1.8 101 chrX 10550335 intron spri - chrX 10550386 intron spri - chrX 10550436 intron spri - chrX_4_10550001 chrX_10550001 RAL-642 1315 chrX 10550855 10550888 chrX 10552322 10552354 hobo 12 1466 1.5 2.5 2.0 4.0 1499 chrX 10550855 intron spri - chrX 10551604 intron spri - chrX 10552354 intron spri - chrX_12_10550001 chrX_10550001 RAL-642 1316 chrX 10666450 10666480 chrX 10666617 10666647 6 167 0.0 1.5 0.8 3.3 197 chrX 10666450 intron X11Lbeta + chrX 10666548 intron X11Lbeta + chrX 10666647 intron X11Lbeta + chrX_6_10665001 chrX_10665001 RAL-642 1317 chrX 10686060 10686073 chrX 10691193 10691210 roo 4 5136 0.0 1.0 0.5 2.7 5150 chrX 10686060 intron X11Lbeta + chrX 10688635 intron X11Lbeta + chrX 10691210 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-642 1318 chrX 10719132 10719149 chrX 10719216 10719233 4 84 0.0 0.5 0.2 3.3 101 chrX 10719132 intron CG32676 - chrX 10719182 intron CG32676 - chrX 10719233 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-642 1319 chrX 10891642 10891654 chrX 10891715 10891729 4 75 0.5 3.5 2.0 1.3 87 chrX 10891642 5` UTR CR45616 + chrX 10891686 5` UTR CR45616 + chrX 10891729 5` UTR CR45616 + chrX_4_10890001 chrX_10890001 RAL-642 1320 chrX 11034290 11034320 chrX 11034619 11034650 4 325 2.0 1.0 1.5 1.6 360 chrX 11034290 intron CG42339 - chrX 11034470 intron CG42339 - chrX 11034650 intron CG42339 - chrX_4_11030001 chrX_11030001 RAL-642 1321 chrX 11062445 11062477 chrX 11062540 11062557 11 92 2.5 2.5 2.5 3.1 112 chrX 11062445 exon CG1537 - chrX 11062501 intron CG1537 - chrX 11062557 intron CG1537 - chrX_11_11060001 chrX_11060001 RAL-642 1322 chrX 11212871 11212883 chrX 11212960 11212976 4 91 1.5 3.0 2.2 1.2 105 chrX 11212871 intergenic not near genes chrX 11212924 intergenic not near genes chrX 11212976 intergenic not near genes chrX_4_11210001 chrX_11210001 RAL-642 1323 chrX 11214987 11215014 chrX 11215350 11215376 7 361 0.5 1.0 0.8 3.9 389 chrX 11214987 intergenic not near genes chrX 11215182 intergenic not near genes chrX 11215376 intergenic not near genes chrX_7_11215001 chrX_11215001 RAL-642 1324 chrX 11268569 11268587 chrX 11270057 11270078 hopper2 8 1489 2.5 0.0 1.2 3.6 1509 chrX 11268569 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270078 intron CG44422 - chrX_8_11265001 chrX_11265001 RAL-642 1325 chrX 11312073 11312091 chrX 11319408 11319430 Stalker2 5 7345 1.0 2.5 1.8 1.8 7357 chrX 11312073 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319430 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-642 1326 chrX 11633435 11633442 chrX 11640489 11640496 297 4 7054 2.0 4.0 3.0 1.0 7061 chrX 11633435 intron Ptp10D + chrX 11636966 intron Ptp10D + chrX 11640496 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-642 1327 chrX 11880927 11880951 chrX 11881009 11881031 5 82 4.0 1.0 2.5 1.4 104 chrX 11880927 intron CG10353 - chrX 11880979 intron CG10353 - chrX 11881031 intron CG10353 - chrX_5_11880001 chrX_11880001 RAL-642 1328 chrX 12038092 12038114 chrX 12038286 12038308 8 194 5.5 3.0 4.2 1.5 216 chrX 12038092 intergenic not near genes chrX 12038200 intergenic not near genes chrX 12038308 intergenic not near genes chrX_8_12035001 chrX_12035001 RAL-642 1329 chrX 12069062 12069085 chrX 12069143 12069171 7 86 1.5 1.5 1.5 2.8 109 chrX 12069062 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069116 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069171 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_7_12065001 chrX_12065001 RAL-642 1330 chrX 12094034 12094063 chrX 12094125 12094155 6 90 1.5 1.0 1.2 2.7 121 chrX 12094034 intron,intron CR43960 +,Ten-a + chrX 12094094 intron,intron CR43960 +,Ten-a + chrX 12094155 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-642 1331 chrX 12126146 12126171 chrX 12126502 12126528 8 355 1.5 2.0 1.8 2.9 382 chrX 12126146 intron Ten-a + chrX 12126337 intron Ten-a + chrX 12126528 intron Ten-a + chrX_8_12125001 chrX_12125001 RAL-642 1332 chrX 12176737 12176768 chrX 12176812 12176844 5 75 1.5 3.5 2.5 1.4 107 chrX 12176737 intron,3` UTR Ten-a +,CG1924 - chrX 12176790 intron,3` UTR Ten-a +,CG1924 - chrX 12176844 intron,3` UTR Ten-a +,CG1924 - chrX_5_12175001 chrX_12175001 RAL-642 1333 chrX 12356858 12356880 chrX 12356968 12356974 6 108 0.5 2.0 1.2 2.7 116 chrX 12356858 intergenic not near genes chrX 12356916 intergenic not near genes chrX 12356974 intergenic not near genes chrX_6_12355001 chrX_12355001 RAL-642 1334 chrX 12715395 12715409 chrX 12715589 12715603 4 194 2.5 2.5 2.5 1.1 208 chrX 12715395 intron Smr - chrX 12715499 intron Smr - chrX 12715603 intron Smr - chrX_4_12715001 chrX_12715001 RAL-642 1335 chrX 12971696 12971718 chrX 12971772 12971777 4 72 3.5 5.5 4.5 0.7 81 chrX 12971696 intron,exon CR43636 -,CG15721 + chrX 12971736 intron,exon CR43636 -,CG15721 + chrX 12971777 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-642 1336 chrX 13172358 13172382 chrX 13172434 13172458 9 76 0.5 1.5 1.0 4.5 100 chrX 13172358 exon CG34411 - chrX 13172408 intron CG34411 - chrX 13172458 intron CG34411 - chrX_9_13170001 chrX_13170001 RAL-642 1337 chrX 13429462 13429493 chrX 13430611 13430642 jockey 7 1149 1.0 0.5 0.8 3.9 1180 chrX 13429462 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430642 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-642 1338 chrX 13754437 13754455 chrX 13754523 13754546 6 90 2.5 1.0 1.8 2.1 109 chrX 13754437 intron Pdcd4 - chrX 13754492 intron Pdcd4 - chrX 13754546 intron Pdcd4 - chrX_6_13750001 chrX_13750001 RAL-642 1339 chrX 13843395 13843406 chrX 13843472 13843483 5 77 2.5 0.5 1.5 2.0 88 chrX 13843395 intron AMPdeam - chrX 13843439 intron AMPdeam - chrX 13843483 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-642 1340 chrX 13934289 13934317 chrX 13934372 13934396 4 82 1.5 2.5 2.0 1.3 107 chrX 13934289 intron mamo - chrX 13934342 intron mamo - chrX 13934396 intron mamo - chrX_4_13930001 chrX_13930001 RAL-642 1341 chrX 14073734 14073740 chrX 14073821 14073827 4 87 0.5 3.0 1.8 1.4 93 chrX 14073734 intergenic not near genes chrX 14073780 intergenic not near genes chrX 14073827 intergenic not near genes chrX_4_14070001 chrX_14070001 RAL-642 1342 chrX 14105028 14105054 chrX 14114172 14114197 roo 7 9145 3.5 4.5 4.0 1.4 9169 chrX 14105028 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114197 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-642 1343 chrX 14290053 14290069 chrX 14291300 14291316 5 1247 3.0 4.0 3.5 1.1 1263 chrX 14290053 intergenic not near genes chrX 14290684 intergenic not near genes chrX 14291316 intergenic not near genes chrX_5_14290001 chrX_14290001 RAL-642 1344 chrX 14447676 14447686 chrX 14447753 14447765 6 79 0.0 1.5 0.8 3.3 89 chrX 14447676 intron dpr8 + chrX 14447720 intron dpr8 + chrX 14447765 intron dpr8 + chrX_6_14445001 chrX_14445001 RAL-642 1345 chrX 14484977 14484995 chrX 14485066 14485084 4 86 0.0 3.5 1.8 1.4 107 chrX 14484977 intergenic not near genes chrX 14485030 intergenic not near genes chrX 14485084 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-642 1346 chrX 14500507 14500536 chrX 14500608 14500613 5 96 1.5 2.0 1.8 1.8 106 chrX 14500507 intergenic not near genes chrX 14500560 intergenic not near genes chrX 14500613 intergenic not near genes chrX_5_14500001 chrX_14500001 RAL-642 1347 chrX 15248797 15248829 chrX 15249093 15249121 6 292 1.5 2.5 2.0 2.0 324 chrX 15248797 intergenic not near genes chrX 15248959 intergenic not near genes chrX 15249121 intergenic not near genes chrX_6_15245001 chrX_15245001 RAL-642 1348 chrX 15256509 15256525 chrX 15256696 15256712 4 186 1.5 3.5 2.5 1.1 203 chrX 15256509 intergenic not near genes chrX 15256610 intergenic not near genes chrX 15256712 intergenic not near genes chrX_4_15255001 chrX_15255001 RAL-642 1349 chrX 15413048 15413082 chrX 15417350 15417379 Juan 13 4299 2.5 3.5 3.0 3.2 4331 chrX 15413048 intron Cngl - chrX 15415214 intron Cngl - chrX 15417379 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-642 1350 chrX 15898447 15898460 chrX 15898596 15898614 4 153 1.0 3.0 2.0 1.3 167 chrX 15898447 intron shi + chrX 15898530 intron shi + chrX 15898614 intron shi + chrX_4_15895001 chrX_15895001 RAL-642 1351 chrX 16295529 16295550 chrX 16295612 16295633 4 84 1.0 0.5 0.8 2.2 104 chrX 16295529 intron CG9911 - chrX 16295581 intron CG9911 - chrX 16295633 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-642 1352 chrX 16529440 16529443 chrX 16529551 16529554 4 111 0.0 3.0 1.5 1.6 114 chrX 16529440 intron para - chrX 16529497 intron para - chrX 16529554 intron para - chrX_4_16525001 chrX_16525001 RAL-642 1353 chrX 16570871 16570905 chrX 16570951 16570965 9 77 1.5 0.5 1.0 4.5 94 chrX 16570871 intron CanA-14F - chrX 16570918 intron CanA-14F - chrX 16570965 intron CanA-14F - chrX_9_16570001 chrX_16570001 RAL-642 1354 chrX 16689643 16689656 chrX 16689711 16689712 11 73 0.5 2.0 1.2 5.0 69 chrX 16689643 intron Sep4 - chrX 16689678 intron Sep4 - chrX 16689712 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-642 1355 chrX 16841408 16841425 chrX 16841485 16841503 6 77 3.0 2.0 2.5 1.7 95 chrX 16841408 exon RSG7 - chrX 16841456 intron RSG7 - chrX 16841503 intron RSG7 - chrX_6_16840001 chrX_16840001 RAL-642 1356 chrX 17011965 17011991 chrX 17012048 17012074 11 80 2.0 3.0 2.5 3.1 109 chrX 17011965 intron CG45002 - chrX 17012020 intron CG45002 - chrX 17012074 intron CG45002 - chrX_11_17010001 chrX_17010001 RAL-642 1357 chrX 17089606 17089629 chrX 17089732 17089755 5 125 0.5 2.0 1.2 2.3 149 chrX 17089606 intergenic not near genes chrX 17089680 intergenic not near genes chrX 17089755 intergenic not near genes chrX_5_17085001 chrX_17085001 RAL-642 1358 chrX 17352609 17352621 chrX 17352712 17352724 5 103 0.0 4.0 2.0 1.7 115 chrX 17352609 intergenic not near genes chrX 17352666 intergenic not near genes chrX 17352724 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-642 1359 chrX 17556944 17556976 chrX 17557443 17557445 mdg1 4 491 2.5 4.0 3.2 1.0 501 chrX 17556944 intron CG43658 - chrX 17557194 intron CG43658 - chrX 17557445 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-642 1360 chrX 17680889 17680925 chrX 17680966 17680989 14 73 0.5 0.0 0.2 11.7 100 chrX 17680889 intron chas - chrX 17680939 intron chas - chrX 17680989 intron chas - chrX_14_17680001 chrX_17680001 RAL-642 1361 chrX 17792972 17792981 chrX 17796268 17796277 flea 5 3295 3.5 1.5 2.5 1.4 3305 chrX 17792972 intron OdsH + chrX 17794624 intron OdsH + chrX 17796277 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-642 1362 chrX 18126601 18126807 chrX 18126723 18126884 7 116 2.0 1.0 1.5 2.8 283 chrX 18126601 intron CG32553 - chrX 18126742 intron CG32553 - chrX 18126884 5` UTR CG32553 - chrX_7_18125001 chrX_18125001 RAL-642 1363 chrX 18194065 18194099 chrX 18194600 18194634 BS 7 534 0.0 0.0 0.0 7.0 569 chrX 18194065 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194634 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-642 1364 chrX 18645012 18645049 chrX 18645110 18645147 5 98 2.0 2.0 2.0 1.7 135 chrX 18645012 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645147 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-642 1365 chrX 18671224 18671243 chrX 18671306 18671325 4 82 0.5 0.5 0.5 2.7 101 chrX 18671224 intergenic not near genes chrX 18671274 intergenic not near genes chrX 18671325 intergenic not near genes chrX_4_18670001 chrX_18670001 RAL-642 1366 chrX 18698848 18698875 chrX 18698965 18698992 4 117 1.5 2.0 1.8 1.4 144 chrX 18698848 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18698992 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-642 1367 chrX 18947508 18947531 chrX 18947601 18947608 4 88 3.5 2.0 2.8 1.1 100 chrX 18947508 intron CG43759 + chrX 18947558 intron CG43759 + chrX 18947608 intron CG43759 + chrX_4_18945001 chrX_18945001 RAL-642 1368 chrX 19020592 19020619 chrX 19020670 19020696 6 78 0.0 1.0 0.5 4.0 104 chrX 19020592 intron CG43759 + chrX 19020644 intron CG43759 + chrX 19020696 intron CG43759 + chrX_6_19020001 chrX_19020001 RAL-642 1369 chrX 19106834 19106845 chrX 19106909 19106916 4 74 6.5 2.0 4.2 0.8 82 chrX 19106834 intergenic not near genes chrX 19106875 intergenic not near genes chrX 19106916 intergenic not near genes chrX_4_19105001 chrX_19105001 RAL-642 1370 chrX 19125711 19125714 chrX 19125837 19125843 4 128 1.5 3.0 2.2 1.2 132 chrX 19125711 intron tgy - chrX 19125777 intron tgy - chrX 19125843 intron tgy - chrX_4_19125001 chrX_19125001 RAL-642 1371 chrX 13057298 13057300 chrX 19242812 19242814 4 6185514 4.5 2.5 3.5 0.9 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-642 1372 chrX 19457167 19457195 chrX 19457270 19457298 13 100 2.5 2.0 2.2 4.1 131 chrX 19457167 intron kek5 + chrX 19457232 intron kek5 + chrX 19457298 intron kek5 + chrX_13_19455001 chrX_19455001 RAL-642 1373 chrX 19472139 19472157 chrX 19472700 19472727 jockey 5 562 1.5 4.5 3.0 1.2 588 chrX 19472139 intergenic kek5 + chrX 19472433 intergenic not near genes chrX 19472727 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-642 1374 chrX 19576563 19576588 chrX 19576641 19576666 5 78 1.0 3.0 2.0 1.7 103 chrX 19576563 intron Tao - chrX 19576614 intron Tao - chrX 19576666 intron Tao - chrX_5_19575001 chrX_19575001 RAL-642 1375 chrX 19662035 19662052 chrX 19662258 19662275 5 223 1.5 2.0 1.8 1.8 240 chrX 19662035 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662275 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-642 1376 chrX 19755903 19755917 chrX 19759514 19759534 4 3610 19.5 25.5 22.5 0.2 3631 chrX 19755903 intron Pmp70 + chrX 19757718 exon Pmp70 + chrX 19759534 exon CG12702 - chrX_4_19755001 chrX_19755001 RAL-642 1377 chrX 19769516 19769533 chrX 19769593 19769606 4 76 4.0 1.5 2.8 1.1 90 chrX 19769516 intron vfl - chrX 19769561 intron vfl - chrX 19769606 intron vfl - chrX_4_19765001 chrX_19765001 RAL-642 1378 chrX 19897379 19897416 chrX 19897456 19897493 7 77 1.5 2.0 1.8 2.5 114 chrX 19897379 intron Hers + chrX 19897436 intron Hers + chrX 19897493 intron Hers + chrX_7_19895001 chrX_19895001 RAL-642 1379 chrX 19983884 19983900 chrX 19983964 19983980 4 80 1.5 1.0 1.2 1.8 96 chrX 19983884 intergenic not near genes chrX 19983932 intergenic not near genes chrX 19983980 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-642 1380 chrX 20041557 20041563 chrX 20041637 20041643 4 80 0.5 2.0 1.2 1.8 86 chrX 20041557 intron Dop2R - chrX 20041600 intron Dop2R - chrX 20041643 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-642 1381 chrX 20052787 20052815 chrX 20052868 20052899 5 82 1.0 1.5 1.2 2.3 112 chrX 20052787 intron Dop2R - chrX 20052843 intron Dop2R - chrX 20052899 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-642 1382 chrX 20325727 20325755 chrX 20325873 20325901 4 140 4.5 1.5 3.0 1.0 174 chrX 20325727 intron CG1504 - chrX 20325814 intron CG1504 - chrX 20325901 intron CG1504 - chrX_4_20325001 chrX_20325001 RAL-642 1383 chrX 20377326 20377349 chrX 20378789 20378816 hobo 10 1466 3.5 7.5 5.5 1.5 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-642 1384 chrX 20468018 20468027 chrX 20468107 20468108 4 87 1.5 0.5 1.0 2.0 90 chrX 20468018 intron GstT3 + chrX 20468063 intron GstT3 + chrX 20468108 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-642 1385 chrX 20594302 20594330 chrX 20594388 20594414 5 81 2.5 1.5 2.0 1.7 112 chrX 20594302 intron RunxA - chrX 20594358 intron RunxA - chrX 20594414 intron RunxA - chrX_5_20590001 chrX_20590001 RAL-642 1386 chrX 20710411 20710439 chrX 20710488 20710512 7 76 0.0 0.5 0.2 5.8 101 chrX 20710411 intergenic not near genes chrX 20710462 intergenic not near genes chrX 20710512 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-642 1387 chrX 20940719 20940754 chrX 20942188 20942223 hobo 6 1469 3.0 2.0 2.5 1.7 1504 chrX 20940719 intergenic not near genes chrX 20941471 intergenic not near genes chrX 20942223 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-642 1388 chrX 21029590 21029688 chrX 21029671 21029837 5 122 0.0 0.0 0.0 5.0 247 chrX 21029590 3` UTR CG1529 - chrX 21029714 3` UTR CG1529 - chrX 21029837 3` UTR CG1529 - chrX_5_21025001 chrX_21025001 RAL-642 1389 chrX 21086130 21086152 chrX 21087159 21087181 jockey 4 1028 3.0 1.5 2.2 1.2 1051 chrX 21086130 intergenic not near genes chrX 21086656 intergenic not near genes chrX 21087181 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-642 1390 chrX 21250369 21250385 chrX 21250434 21250443 7 66 2.0 3.0 2.5 2.0 74 chrX 21250369 intron,exon CG32521 -,CG1722 - chrX 21250406 intron,exon CG32521 -,CG1722 - chrX 21250443 intron,exon CG32521 -,CG1722 - chrX_7_21250001 chrX_21250001 RAL-642 1391 chrX 21323915 21323948 chrX 21323997 21324029 11 79 7.5 2.5 5.0 1.8 114 chrX 21323915 5` UTR Dd - chrX 21323972 5` UTR Dd - chrX 21324029 intergenic CG1486 +,Dd - chrX_11_21320001 chrX_21320001 RAL-642 1392 chrX 22522630 22522646 chrX 22525448 22525466 NOF 4 2820 4.5 1.5 3.0 1.0 2836 chrX 22522630 intron CG17600 + chrX 22524048 intron CG17600 + chrX 22525466 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-642 1393 chrX 22584343 22584360 chrX 22584426 22584451 4 89 2.0 1.0 1.5 1.6 108 chrX 22584343 intron Cda4 - chrX 22584397 intron Cda4 - chrX 22584451 intron Cda4 - chrX_4_22580001 chrX_22580001 RAL-642 1394 chrX 22764380 22764393 chrX 22764476 22764487 4 95 1.0 1.0 1.0 2.0 107 chrX 22764380 intron CR44997 + chrX 22764434 intron CR44997 + chrX 22764487 intron CR44997 + chrX_4_22760001 chrX_22760001 RAL-642 1395 chrX 22771517 22771535 chrX 22774808 22774813 297 5 3288 1.5 0.5 1.0 2.5 3296 chrX 22771517 intron CR44997 + chrX 22773165 intron CR44997 + chrX 22774813 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-642 1396 chrX 22798782 22798796 chrX 22798895 22798912 5 116 3.0 3.0 3.0 1.2 130 chrX 22798782 intergenic not near genes chrX 22798847 intergenic not near genes chrX 22798912 intergenic not near genes chrX_5_22795001 chrX_22795001 RAL-642 1397 chrX 22922528 22922551 chrX 22922608 22922614 5 77 1.0 2.5 1.8 1.8 86 chrX 22922528 intergenic not near genes chrX 22922571 intergenic not near genes chrX 22922614 intergenic not near genes chrX_5_22920001 chrX_22920001 RAL-642 1398 chrX 22992394 22992418 chrX 22992524 22992548 13 130 0.5 0.0 0.2 10.8 154 chrX 22992394 intron,intron stnA -,stnB - chrX 22992471 intron,intron stnA -,stnB - chrX 22992548 intron,intron stnA -,stnB - chrX_13_22990001 chrX_22990001 RAL-642 1399 chrX 22996321 22996338 chrX 23003553 23003569 roo 6 7232 1.0 0.5 0.8 3.3 7248 chrX 22996321 intron,intron stnA -,stnB - chrX 22999945 intron,intron stnA -,stnB - chrX 23003569 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-642 1400 chrX 23036391 23036411 chrX 23037792 23037811 pogo 4 1401 2.0 1.5 1.8 1.4 1420 chrX 23036391 intron CG12061 + chrX 23037101 intron CG12061 + chrX 23037811 intron CG12061 + chrX_4_23035001 chrX_23035001 RAL-642