SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 8112 8136 chr2L 9255 9279 12 1144 18.0 37.5 27.8 0.4 1167 chr2L 8112 exon CG11023 + chr2L 8696 3` UTR CG11023 + chr2L 9279 3` UTR CG11023 + chr2L_12_5001 chr2L_5001 RAL-639 2 chr2L 25310 25336 chr2L 26016 26042 6 707 8.0 12.5 10.2 0.5 732 chr2L 25310 intergenic Cda5 -,Ir21a - chr2L 25676 3` UTR Cda5 - chr2L 26042 3` UTR Cda5 - chr2L_6_25001 chr2L_25001 RAL-639 3 chr2L 47459 47486 chr2L 52564 52591 jockey 10 5104 4.5 2.0 3.2 2.4 5132 chr2L 47459 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_10_50001 chr2L_50001 RAL-639 4 chr2L 73787 73813 chr2L 73896 73922 8 107 3.5 0.5 2.0 2.7 135 chr2L 73787 3` UTR,intron CR44987 -,galectin + chr2L 73854 intron galectin + chr2L 73922 intron galectin + chr2L_8_70001 chr2L_70001 RAL-639 5 chr2L 92568 92593 chr2L 92801 92825 8 233 2.5 0.5 1.5 3.2 257 chr2L 92568 intergenic not near genes chr2L 92696 intergenic not near genes chr2L 92825 intergenic not near genes chr2L_8_90001 chr2L_90001 RAL-639 6 chr2L 140747 140785 chr2L 141094 141122 11 344 1.0 1.0 1.0 5.5 375 chr2L 140747 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 140934 intron,5` UTR,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 141122 intron,3` UTR CG11455 +,CG31974 - chr2L_11_140001 chr2L_140001 RAL-639 7 chr2L 142491 142527 chr2L 142582 142613 10 92 3.5 3.0 3.2 2.4 122 chr2L 142491 intron,5` UTR CG11455 +,CG31974 - chr2L 142552 intron,5` UTR CG11455 +,CG31974 - chr2L 142613 intron,5` UTR CG11455 +,CG31974 - chr2L_10_140001 chr2L_140001 RAL-639 8 chr2L 165207 165238 chr2L 165472 165503 7 265 1.5 1.0 1.2 3.2 296 chr2L 165207 intron spen + chr2L 165355 intron spen + chr2L 165503 intron spen + chr2L_7_165001 chr2L_165001 RAL-639 9 chr2L 179456 179490 chr2L 179539 179573 8 80 1.5 1.0 1.2 3.6 117 chr2L 179456 intron spen + chr2L 179514 intron spen + chr2L 179573 intron spen + chr2L_8_175001 chr2L_175001 RAL-639 10 chr2L 263303 263329 chr2L 263449 263475 5 146 1.0 1.5 1.2 2.3 172 chr2L 263303 intron,3` UTR CG3645 -,CG17075 - chr2L 263389 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-639 11 chr2L 314288 314304 chr2L 314370 314389 4 84 1.5 0.0 0.8 2.2 101 chr2L 314288 intron Plc21C + chr2L 314338 intron Plc21C + chr2L 314389 intron Plc21C + chr2L_4_310001 chr2L_310001 RAL-639 12 chr2L 316713 316741 chr2L 316789 316817 10 76 1.5 3.5 2.5 2.9 104 chr2L 316713 intron Plc21C + chr2L 316765 intron Plc21C + chr2L 316817 intron Plc21C + chr2L_10_315001 chr2L_315001 RAL-639 13 chr2L 325134 325150 chr2L 325208 325227 4 76 4.0 3.0 3.5 0.9 93 chr2L 325134 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-639 14 chr2L 347891 347918 chr2L 355386 355418 blood 6 7499 3.5 1.0 2.2 1.9 7527 chr2L 347891 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355418 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-639 15 chr2L 575420 575443 chr2L 575516 575539 10 95 1.0 0.5 0.8 5.6 119 chr2L 575420 3` UTR cold + chr2L 575480 3` UTR cold + chr2L 575539 3` UTR cold + chr2L_10_575001 chr2L_575001 RAL-639 16 chr2L 585534 585568 chr2L 585612 585646 12 78 1.5 3.5 2.5 3.4 112 chr2L 585534 intron Gsc - chr2L 585590 intron Gsc - chr2L 585646 intron Gsc - chr2L_12_585001 chr2L_585001 RAL-639 17 chr2L 612615 612651 chr2L 612721 612727 11 94 1.5 1.0 1.2 5.0 112 chr2L 612615 intergenic not near genes chr2L 612671 intergenic not near genes chr2L 612727 intergenic not near genes chr2L_11_610001 chr2L_610001 RAL-639 18 chr2L 658568 658587 chr2L 658642 658666 7 76 3.5 6.0 4.8 1.2 98 chr2L 658568 intron ds - chr2L 658617 intron ds - chr2L 658666 intron ds - chr2L_7_655001 chr2L_655001 RAL-639 19 chr2L 770467 770483 chr2L 772244 772260 Bari1 6 1777 4.5 2.0 3.2 1.4 1793 chr2L 770467 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772260 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-639 20 chr2L 795259 795282 chr2L 795369 795375 10 107 5.5 0.0 2.8 2.6 116 chr2L 795259 intergenic not near genes chr2L 795317 intergenic not near genes chr2L 795375 intergenic not near genes chr2L_10_795001 chr2L_795001 RAL-639 21 chr2L 809563 809590 chr2L 809645 809672 7 80 3.5 0.0 1.8 2.5 109 chr2L 809563 intergenic not near genes chr2L 809618 intergenic not near genes chr2L 809672 intergenic not near genes chr2L_7_805001 chr2L_805001 RAL-639 22 chr2L 931639 931665 chr2L 931717 931743 4 78 3.0 5.5 4.2 0.8 104 chr2L 931639 intron CG4341 + chr2L 931691 intron CG4341 + chr2L 931743 intron CG4341 + chr2L_4_930001 chr2L_930001 RAL-639 23 chr2L 976892 976908 chr2L 984528 984543 roo 5 7636 3.0 2.0 2.5 1.4 7651 chr2L 976892 intergenic not near genes chr2L 980718 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-639 24 chr2L 1035557 1035591 chr2L 1035634 1035668 5 77 3.5 2.5 3.0 1.2 111 chr2L 1035557 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-639 25 chr2L 1156864 1156876 chr2L 1156967 1156970 5 100 4.5 1.5 3.0 1.2 106 chr2L 1156864 intron capt - chr2L 1156917 intron capt - chr2L 1156970 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-639 26 chr2L 1220128 1220162 chr2L 1227594 1227628 blood 13 7466 1.5 2.0 1.8 4.6 7500 chr2L 1220128 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_13_1220001 chr2L_1220001 RAL-639 27 chr2L 1261248 1261254 chr2L 1261329 1261334 4 81 2.0 1.0 1.5 1.6 86 chr2L 1261248 intron robo3 + chr2L 1261291 intron robo3 + chr2L 1261334 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-639 28 chr2L 1541625 1541655 chr2L 1541734 1541760 10 106 2.0 2.5 2.2 3.1 135 chr2L 1541625 intergenic not near genes chr2L 1541692 intergenic not near genes chr2L 1541760 intergenic not near genes chr2L_10_1540001 chr2L_1540001 RAL-639 29 chr2L 1570698 1570720 chr2L 1573570 1573592 F-element 5 2872 4.5 4.0 4.2 1.0 2894 chr2L 1570698 intron haf + chr2L 1572145 intron haf + chr2L 1573592 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-639 30 chr2L 1591866 1591895 chr2L 1591950 1591979 6 84 1.0 2.0 1.5 2.4 113 chr2L 1591866 intron haf + chr2L 1591922 intron haf + chr2L 1591979 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-639 31 chr2L 1711358 1711385 chr2L 1711682 1711708 mdg3 12 323 5.0 3.5 4.2 2.3 350 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_12_1710001 chr2L_1710001 RAL-639 32 chr2L 1717500 1717508 chr2L 1717586 1717600 4 91 0.0 3.5 1.8 1.4 100 chr2L 1717500 intron Rim2 - chr2L 1717550 intron Rim2 - chr2L 1717600 exon Rim2 - chr2L_4_1715001 chr2L_1715001 RAL-639 33 chr2L 1721828 1721852 chr2L 1721912 1721936 6 83 0.5 5.0 2.8 1.6 108 chr2L 1721828 intron Rim2 - chr2L 1721882 intron Rim2 - chr2L 1721936 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-639 34 chr2L 1744813 1744836 chr2L 1744890 1744912 11 76 2.5 3.5 3.0 2.8 99 chr2L 1744813 intron CG17646 + chr2L 1744862 intron CG17646 + chr2L 1744912 intron CG17646 + chr2L_11_1740001 chr2L_1740001 RAL-639 35 chr2L 1836790 1836796 chr2L 1836897 1836904 4 108 3.5 0.0 1.8 1.4 114 chr2L 1836790 intron wry + chr2L 1836847 intron wry + chr2L 1836904 intron wry + chr2L_4_1835001 chr2L_1835001 RAL-639 36 chr2L 1868239 1868243 chr2L 1868437 1868449 4 204 1.5 3.0 2.2 1.2 210 chr2L 1868239 intron CG31663 - chr2L 1868344 intron CG31663 - chr2L 1868449 intron CG31663 - chr2L_4_1865001 chr2L_1865001 RAL-639 37 chr2L 1868254 1868257 chr2L 1868435 1868463 5 199 0.5 3.0 1.8 1.8 209 chr2L 1868254 intron CG31663 - chr2L 1868358 intron CG31663 - chr2L 1868463 intron CG31663 - chr2L_5_1865001 chr2L_1865001 RAL-639 38 chr2L 1883435 1883445 chr2L 1884010 1884025 4 578 1.0 4.0 2.5 1.1 590 chr2L 1883435 intron CG15358 - chr2L 1883730 intron CG15358 - chr2L 1884025 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-639 39 chr2L 1993195 1993229 chr2L 1993281 1993315 8 83 1.0 2.5 1.8 2.9 120 chr2L 1993195 intergenic not near genes chr2L 1993255 intergenic not near genes chr2L 1993315 intergenic not near genes chr2L_8_1990001 chr2L_1990001 RAL-639 40 chr2L 1999569 1999583 chr2L 1999730 1999747 4 163 2.5 4.0 3.2 1.0 178 chr2L 1999569 intron CG33543 - chr2L 1999658 intron CG33543 - chr2L 1999747 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-639 41 chr2L 2068814 2068837 chr2L 2068998 2069018 7 182 1.5 3.0 2.2 2.2 204 chr2L 2068814 intron dpr3 - chr2L 2068916 intron dpr3 - chr2L 2069018 intron dpr3 - chr2L_7_2065001 chr2L_2065001 RAL-639 42 chr2L 2100375 2100403 chr2L 2109526 2109554 roo 10 9150 4.0 2.0 3.0 2.5 9179 chr2L 2100375 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109554 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-639 43 chr2L 2112117 2112145 chr2L 2119777 2119806 opus 4 7661 1.0 3.0 2.0 1.3 7689 chr2L 2112117 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119806 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-639 44 chr2L 2260802 2260836 chr2L 2260888 2260922 9 86 2.5 4.0 3.2 2.1 120 chr2L 2260802 intergenic not near genes chr2L 2260862 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_9_2260001 chr2L_2260001 RAL-639 45 chr2L 2262311 2262335 chr2L 2262388 2262412 8 77 2.5 0.0 1.2 3.6 101 chr2L 2262311 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262412 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-639 46 chr2L 2294044 2294075 chr2L 2299247 2299280 copia 5 5203 1.5 2.5 2.0 1.7 5236 chr2L 2294044 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-639 47 chr2L 2364094 2364100 chr2L 2364169 2364176 5 76 2.0 10.0 6.0 0.7 82 chr2L 2364094 intron Rab5 - chr2L 2364135 intron Rab5 - chr2L 2364176 intron Rab5 - chr2L_5_2360001 chr2L_2360001 RAL-639 48 chr2L 2398929 2398958 chr2L 2399007 2399035 7 77 1.0 5.5 3.2 1.7 106 chr2L 2398929 intron VGlut + chr2L 2398982 intron VGlut + chr2L 2399035 intron VGlut + chr2L_7_2395001 chr2L_2395001 RAL-639 49 chr2L 2412172 2412204 chr2L 2412281 2412313 9 109 2.0 2.0 2.0 3.0 141 chr2L 2412172 intron CG18641 - chr2L 2412242 intron CG18641 - chr2L 2412313 intron CG18641 - chr2L_9_2410001 chr2L_2410001 RAL-639 50 chr2L 2626329 2626354 chr2L 2626838 2626861 6 508 3.5 2.5 3.0 1.5 532 chr2L 2626329 3` UTR CR45705 - chr2L 2626595 3` UTR CR45705 - chr2L 2626861 3` UTR CR45705 - chr2L_6_2625001 chr2L_2625001 RAL-639 51 chr2L 2661198 2661227 chr2L 2663036 2663049 I-element 6 1832 1.5 2.0 1.8 2.1 1851 chr2L 2661198 intergenic not near genes chr2L 2662124 intergenic not near genes chr2L 2663049 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-639 52 chr2L 2667626 2667649 chr2L 2667705 2667728 10 79 5.0 0.5 2.8 2.6 102 chr2L 2667626 intergenic not near genes chr2L 2667677 intergenic not near genes chr2L 2667728 intergenic not near genes chr2L_10_2665001 chr2L_2665001 RAL-639 53 chr2L 2683890 2683902 chr2L 2683968 2683979 4 78 0.0 4.0 2.0 1.3 89 chr2L 2683890 5` UTR CG31690 + chr2L 2683934 5` UTR CG31690 + chr2L 2683979 5` UTR CG31690 + chr2L_4_2680001 chr2L_2680001 RAL-639 54 chr2L 2715686 2715699 chr2L 2715762 2715773 5 75 3.5 2.0 2.8 1.3 87 chr2L 2715686 intron CG31690 + chr2L 2715730 intron CG31690 + chr2L 2715773 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-639 55 chr2L 2804239 2804273 chr2L 2804328 2804357 11 88 5.5 5.5 5.5 1.7 118 chr2L 2804239 intergenic not near genes chr2L 2804298 intergenic not near genes chr2L 2804357 intergenic not near genes chr2L_11_2800001 chr2L_2800001 RAL-639 56 chr2L 2826540 2826574 chr2L 2826632 2826659 4 87 0.5 2.5 1.5 1.6 119 chr2L 2826540 intron Duox - chr2L 2826600 intron Duox - chr2L 2826659 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-639 57 chr2L 2885381 2885387 chr2L 2885458 2885462 4 76 5.0 3.5 4.2 0.8 81 chr2L 2885381 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885462 intron NTPase - chr2L_4_2885001 chr2L_2885001 RAL-639 58 chr2L 2887294 2887314 chr2L 2887410 2887430 4 116 3.5 4.0 3.8 0.8 136 chr2L 2887294 intron lilli + chr2L 2887362 intron lilli + chr2L 2887430 intron lilli + chr2L_4_2885001 chr2L_2885001 RAL-639 59 chr2L 3073030 3073057 chr2L 3078233 3078260 copia 8 5203 1.5 3.5 2.5 2.3 5230 chr2L 3073030 intron toc - chr2L 3075645 intron toc - chr2L 3078260 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-639 60 chr2L 3147274 3147303 chr2L 3147351 3147379 10 74 1.5 2.5 2.0 3.3 105 chr2L 3147274 3` UTR Mad - chr2L 3147326 3` UTR Mad - chr2L 3147379 3` UTR Mad - chr2L_10_3145001 chr2L_3145001 RAL-639 61 chr2L 3202742 3202772 chr2L 3210171 3210195 mdg1 10 7428 2.5 5.0 3.8 2.1 7453 chr2L 3202742 intergenic not near genes chr2L 3206468 intergenic not near genes chr2L 3210195 intergenic CR45336 + chr2L_10_3205001 chr2L_3205001 RAL-639 62 chr2L 3242012 3242039 chr2L 3242114 3242141 5 101 5.5 7.5 6.5 0.7 129 chr2L 3242012 intergenic not near genes chr2L 3242076 intergenic not near genes chr2L 3242141 intergenic not near genes chr2L_5_3240001 chr2L_3240001 RAL-639 63 chr2L 3251497 3251519 chr2L 3259062 3259083 springer 5 7565 1.0 3.5 2.2 1.6 7586 chr2L 3251497 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259083 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-639 64 chr2L 3291240 3291267 chr2L 3291317 3291343 5 78 1.5 4.5 3.0 1.2 103 chr2L 3291240 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291343 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-639 65 chr2L 3319082 3319104 chr2L 3319156 3319180 5 75 2.0 0.0 1.0 2.5 98 chr2L 3319082 exon CG3326 - chr2L 3319131 intron CG3326 - chr2L 3319180 intron CG3326 - chr2L_5_3315001 chr2L_3315001 RAL-639 66 chr2L 3388598 3388623 chr2L 3388839 3388864 pogo 7 241 1.0 2.5 1.8 2.5 266 chr2L 3388598 intergenic CG42460 - chr2L 3388731 intergenic CG42460 - chr2L 3388864 intergenic CG42460 -,CR44791 + chr2L_7_3385001 chr2L_3385001 RAL-639 67 chr2L 3427748 3427775 chr2L 3428558 3428585 6 812 22.0 11.5 16.8 0.3 837 chr2L 3427748 intergenic not near genes chr2L 3428166 intergenic not near genes chr2L 3428585 intergenic not near genes chr2L_6_3425001 chr2L_3425001 RAL-639 68 chr2L 3436024 3436059 chr2L 3436129 3436163 4 104 1.5 1.5 1.5 1.6 139 chr2L 3436024 intergenic not near genes chr2L 3436094 intergenic not near genes chr2L 3436163 intergenic not near genes chr2L_4_3435001 chr2L_3435001 RAL-639 69 chr2L 3508353 3508373 chr2L 3508430 3508451 6 78 1.0 1.0 1.0 3.0 98 chr2L 3508353 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508451 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-639 70 chr2L 3523034 3523054 chr2L 3523147 3523167 4 112 2.0 2.0 2.0 1.3 133 chr2L 3523034 exon Sr-CIV - chr2L 3523100 intron Sr-CIV - chr2L 3523167 exon Sr-CIV - chr2L_4_3520001 chr2L_3520001 RAL-639 71 chr2L 3540359 3540373 chr2L 3540459 3540473 6 100 1.0 1.5 1.2 2.7 114 chr2L 3540359 intron drm + chr2L 3540416 intron drm + chr2L 3540473 intron drm + chr2L_6_3540001 chr2L_3540001 RAL-639 72 chr2L 3603626 3603652 chr2L 3603722 3603748 8 96 0.5 2.5 1.5 3.2 122 chr2L 3603626 intergenic not near genes chr2L 3603687 intergenic not near genes chr2L 3603748 intergenic odd - chr2L_8_3600001 chr2L_3600001 RAL-639 73 chr2L 3649279 3649309 chr2L 3649362 3649397 6 87 0.5 1.0 0.8 3.3 118 chr2L 3649279 intron for - chr2L 3649338 intron for - chr2L 3649397 intron for - chr2L_6_3645001 chr2L_3645001 RAL-639 74 chr2L 3784817 3784827 chr2L 3785674 3785684 4 857 8.5 10.0 9.2 0.4 867 chr2L 3784817 intergenic CG31960 + chr2L 3785250 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_4_3785001 chr2L_3785001 RAL-639 75 chr2L 3891893 3891926 chr2L 3891977 3892011 9 83 1.5 1.5 1.5 3.6 118 chr2L 3891893 intron capu - chr2L 3891952 intron capu - chr2L 3892011 intron capu - chr2L_9_3890001 chr2L_3890001 RAL-639 76 chr2L 3950082 3950100 chr2L 3950158 3950175 6 76 2.0 1.5 1.8 2.1 93 chr2L 3950082 intron fred - chr2L 3950128 intron fred - chr2L 3950175 intron fred - chr2L_6_3950001 chr2L_3950001 RAL-639 77 chr2L 4069272 4069299 chr2L 4069484 4069511 9 212 2.0 4.0 3.0 2.2 239 chr2L 4069272 intron ed + chr2L 4069392 intron ed + chr2L 4069511 intron ed + chr2L_9_4065001 chr2L_4065001 RAL-639 78 chr2L 4150624 4150647 chr2L 4150704 4150726 5 78 0.5 0.5 0.5 3.3 102 chr2L 4150624 exon CG2955 + chr2L 4150675 exon CG2955 + chr2L 4150726 exon CG2955 + chr2L_5_4150001 chr2L_4150001 RAL-639 79 chr2L 4166383 4166407 chr2L 4166466 4166490 6 83 1.5 2.0 1.8 2.1 107 chr2L 4166383 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-639 80 chr2L 4192992 4193016 chr2L 4193073 4193097 4 81 0.5 2.0 1.2 1.8 105 chr2L 4192992 intron CG3714 - chr2L 4193044 intron CG3714 - chr2L 4193097 intron CG3714 - chr2L_4_4190001 chr2L_4190001 RAL-639 81 chr2L 4351475 4351498 chr2L 4351551 4351571 7 75 4.0 0.0 2.0 2.3 96 chr2L 4351475 intergenic CR44700 + chr2L 4351523 intergenic CR44700 + chr2L 4351571 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-639 82 chr2L 4401725 4401755 chr2L 4401869 4401891 9 142 2.5 1.0 1.8 3.2 166 chr2L 4401725 exon CG33003 + chr2L 4401808 intron CG33003 + chr2L 4401891 exon CG33003 + chr2L_9_4400001 chr2L_4400001 RAL-639 83 chr2L 4424517 4424542 chr2L 4424625 4424653 4 110 3.5 1.0 2.2 1.2 136 chr2L 4424517 intron CG15431 - chr2L 4424585 intron CG15431 - chr2L 4424653 intron CG15431 - chr2L_4_4420001 chr2L_4420001 RAL-639 84 chr2L 4601704 4601735 chr2L 4609145 4609176 mdg1 7 7441 1.0 4.0 2.5 2.0 7472 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-639 85 chr2L 4748695 4748723 chr2L 4748774 4748801 9 79 2.0 3.5 2.8 2.4 106 chr2L 4748695 intron CG15630 - chr2L 4748748 intron CG15630 - chr2L 4748801 intron CG15630 - chr2L_9_4745001 chr2L_4745001 RAL-639 86 chr2L 4819496 4819519 chr2L 4819619 4819642 11 123 2.0 4.5 3.2 2.6 146 chr2L 4819496 intergenic not near genes chr2L 4819569 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_11_4815001 chr2L_4815001 RAL-639 87 chr2L 4841073 4841093 chr2L 4841149 4841159 8 74 8.5 4.0 6.2 1.1 86 chr2L 4841073 intron CG12194 + chr2L 4841116 intron CG12194 + chr2L 4841159 exon CG12194 + chr2L_8_4840001 chr2L_4840001 RAL-639 88 chr2L 4861691 4861716 chr2L 4861795 4861820 7 104 0.5 3.0 1.8 2.5 129 chr2L 4861691 intron pog + chr2L 4861756 intron pog + chr2L 4861820 intron pog + chr2L_7_4860001 chr2L_4860001 RAL-639 89 chr2L 4918177 4918198 chr2L 4923248 4923271 jockey 7 5072 0.5 3.0 1.8 2.5 5094 chr2L 4918177 intron hoe1 - chr2L 4920724 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-639 90 chr2L 4932767 4932785 chr2L 4933016 4933035 6 249 4.0 0.0 2.0 2.0 268 chr2L 4932767 intergenic hoe2 -,hoe1 - chr2L 4932901 intergenic hoe2 - chr2L 4933035 intergenic hoe2 - chr2L_6_4930001 chr2L_4930001 RAL-639 91 chr2L 4991621 4991650 chr2L 4991696 4991726 4 72 2.5 2.0 2.2 1.2 105 chr2L 4991621 3` UTR CG34126 + chr2L 4991674 3` UTR CG34126 + chr2L 4991726 3` UTR CG34126 + chr2L_4_4990001 chr2L_4990001 RAL-639 92 chr2L 5040690 5040717 chr2L 5040782 5040813 7 95 4.0 1.0 2.5 2.0 123 chr2L 5040690 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040752 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040813 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_7_5040001 chr2L_5040001 RAL-639 93 chr2L 5085067 5085341 chr2L 5085146 5085424 6 82 1.5 2.0 1.8 2.1 357 chr2L 5085067 intron pgant5 - chr2L 5085246 intron pgant5 - chr2L 5085424 intron pgant5 - chr2L_6_5085001 chr2L_5085001 RAL-639 94 chr2L 5120977 5121004 chr2L 5121071 5121098 9 94 3.0 2.0 2.5 2.6 121 chr2L 5120977 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-639 95 chr2L 5206672 5206702 chr2L 5206881 5206911 4 210 1.5 0.0 0.8 2.2 239 chr2L 5206672 3` UTR Msp300 + chr2L 5206792 3` UTR Msp300 + chr2L 5206911 3` UTR Msp300 + chr2L_4_5205001 chr2L_5205001 RAL-639 96 chr2L 5296214 5296247 chr2L 5296293 5296324 6 78 1.0 3.0 2.0 2.0 110 chr2L 5296214 intron vri + chr2L 5296269 intron vri + chr2L 5296324 intron vri + chr2L_6_5295001 chr2L_5295001 RAL-639 97 chr2L 5380229 5380241 chr2L 5380324 5380336 4 95 6.5 5.0 5.8 0.6 107 chr2L 5380229 3` UTR CR42850 - chr2L 5380282 3` UTR CR42850 - chr2L 5380336 intron CR42850 - chr2L_4_5380001 chr2L_5380001 RAL-639 98 chr2L 5448010 5448029 chr2L 5448094 5448113 5 84 0.0 3.5 1.8 1.8 103 chr2L 5448010 intergenic not near genes chr2L 5448062 intergenic not near genes chr2L 5448113 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-639 99 chr2L 5449726 5449731 chr2L 5449816 5449818 4 89 0.0 0.0 0.0 4.0 92 chr2L 5449726 intergenic not near genes chr2L 5449772 intergenic not near genes chr2L 5449818 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-639 100 chr2L 5488018 5488036 chr2L 5488096 5488116 9 80 1.5 0.5 1.0 4.5 98 chr2L 5488018 intergenic not near genes chr2L 5488067 intergenic not near genes chr2L 5488116 intergenic not near genes chr2L_9_5485001 chr2L_5485001 RAL-639 101 chr2L 5500060 5500079 chr2L 5500146 5500165 5 86 3.0 4.5 3.8 1.0 105 chr2L 5500060 intergenic not near genes chr2L 5500112 intergenic not near genes chr2L 5500165 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-639 102 chr2L 5508529 5508550 chr2L 5508604 5508626 5 76 3.5 1.0 2.2 1.6 97 chr2L 5508529 intergenic not near genes chr2L 5508578 intergenic not near genes chr2L 5508626 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-639 103 chr2L 5573678 5573711 chr2L 5573754 5573787 13 76 2.0 1.5 1.8 4.6 109 chr2L 5573678 intergenic not near genes chr2L 5573732 intergenic not near genes chr2L 5573787 intergenic not near genes chr2L_13_5570001 chr2L_5570001 RAL-639 104 chr2L 5668607 5668611 chr2L 5668685 5668689 4 78 3.5 2.5 3.0 1.0 82 chr2L 5668607 intron Hsp60C + chr2L 5668648 intron Hsp60C + chr2L 5668689 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-639 105 chr2L 5676891 5676921 chr2L 5676987 5677017 14 96 0.0 3.5 1.8 5.0 126 chr2L 5676891 intergenic not near genes chr2L 5676954 intergenic not near genes chr2L 5677017 intergenic not near genes chr2L_14_5675001 chr2L_5675001 RAL-639 106 chr2L 5762385 5762406 chr2L 5762508 5762529 4 123 1.5 2.5 2.0 1.3 144 chr2L 5762385 3` UTR CG11030 + chr2L 5762457 intergenic CG11030 +,obst-E - chr2L 5762529 intergenic obst-E -,CG11030 + chr2L_4_5760001 chr2L_5760001 RAL-639 107 chr2L 5780911 5780928 chr2L 5781016 5781033 7 104 4.0 2.0 3.0 1.8 122 chr2L 5780911 intron CG9171 - chr2L 5780972 intron CG9171 - chr2L 5781033 intron CG9171 - chr2L_7_5780001 chr2L_5780001 RAL-639 108 chr2L 5827716 5827741 chr2L 5836723 5836748 roo 10 9007 4.0 3.5 3.8 2.1 9032 chr2L 5827716 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-639 109 chr2L 5839106 5839125 chr2L 5839186 5839205 6 80 2.0 3.0 2.5 1.7 99 chr2L 5839106 intron TrissinR + chr2L 5839156 intron TrissinR + chr2L 5839205 intron TrissinR + chr2L_6_5835001 chr2L_5835001 RAL-639 110 chr2L 5887603 5887632 chr2L 5887684 5887713 11 79 0.5 3.5 2.0 3.7 110 chr2L 5887603 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887713 3` UTR CR44577 - chr2L_11_5885001 chr2L_5885001 RAL-639 111 chr2L 5904461 5904474 chr2L 5904541 5904553 4 80 3.5 0.0 1.8 1.4 92 chr2L 5904461 intron CG9021 - chr2L 5904507 intron CG9021 - chr2L 5904553 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-639 112 chr2L 5982131 5982166 chr2L 5982210 5982243 8 76 1.5 1.5 1.5 3.2 112 chr2L 5982131 intron eIF-4a + chr2L 5982187 intron eIF-4a + chr2L 5982243 intron eIF-4a + chr2L_8_5980001 chr2L_5980001 RAL-639 113 chr2L 6002443 6002465 chr2L 6002529 6002551 5 86 2.0 1.5 1.8 1.8 108 chr2L 6002443 3` UTR Tsp26A + chr2L 6002497 3` UTR Tsp26A + chr2L 6002551 3` UTR Tsp26A + chr2L_5_6000001 chr2L_6000001 RAL-639 114 chr2L 6007103 6007126 chr2L 6007179 6007195 5 74 2.0 0.0 1.0 2.5 92 chr2L 6007103 intergenic CG9098 -,Gal - chr2L 6007149 intergenic CG9098 -,Gal - chr2L 6007195 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-639 115 chr2L 6050445 6050459 chr2L 6050549 6050563 7 103 3.0 3.5 3.2 1.7 118 chr2L 6050445 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050563 intergenic CG12393 +,CG9135 + chr2L_7_6050001 chr2L_6050001 RAL-639 116 chr2L 6074496 6074529 chr2L 6074574 6074607 9 76 2.0 4.0 3.0 2.2 111 chr2L 6074496 3` UTR CR43801 - chr2L 6074552 3` UTR CR43801 - chr2L 6074607 3` UTR CR43801 - chr2L_9_6070001 chr2L_6070001 RAL-639 117 chr2L 6105423 6105437 chr2L 6105507 6105520 4 84 3.5 0.0 1.8 1.4 97 chr2L 6105423 intron stai + chr2L 6105472 intron stai + chr2L 6105520 intron stai + chr2L_4_6105001 chr2L_6105001 RAL-639 118 chr2L 6124385 6124418 chr2L 6124461 6124494 9 76 3.5 0.5 2.0 3.0 109 chr2L 6124385 intergenic stai + chr2L 6124440 intergenic not near genes chr2L 6124494 intergenic not near genes chr2L_9_6120001 chr2L_6120001 RAL-639 119 chr2L 6185459 6185473 chr2L 6185519 6185546 9 74 3.5 2.5 3.0 2.2 87 chr2L 6185459 intron CG34380 + chr2L 6185502 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_9_6185001 chr2L_6185001 RAL-639 120 chr2L 6200012 6200025 chr2L 6200163 6200176 5 151 1.0 1.0 1.0 2.5 164 chr2L 6200012 intron CG34380 + chr2L 6200094 intron CG34380 + chr2L 6200176 intron CG34380 + chr2L_5_6200001 chr2L_6200001 RAL-639 121 chr2L 6279645 6279652 chr2L 6279724 6279731 INE-1 6 79 3.0 0.5 1.8 2.1 86 chr2L 6279645 intron Ddr + chr2L 6279688 intron Ddr + chr2L 6279731 intron Ddr + chr2L_6_6275001 chr2L_6275001 RAL-639 122 chr2L 6283971 6283980 chr2L 6284081 6284090 4 110 0.5 0.5 0.5 2.7 119 chr2L 6283971 intron Ddr + chr2L 6284030 intron Ddr + chr2L 6284090 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-639 123 chr2L 6363157 6363182 chr2L 6366072 6366104 Burdock 12 2920 3.0 2.5 2.8 3.2 2947 chr2L 6363157 intergenic not near genes chr2L 6364630 intergenic not near genes chr2L 6366104 intergenic not near genes chr2L_12_6360001 chr2L_6360001 RAL-639 124 chr2L 6426855 6426886 chr2L 6445115 6445146 roo 12 18260 3.5 3.5 3.5 2.7 18291 chr2L 6426855 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-639 125 chr2L 6483796 6483808 chr2L 6483892 6483901 4 96 2.5 8.0 5.2 0.6 105 chr2L 6483796 exon DLP + chr2L 6483848 exon DLP + chr2L 6483901 exon DLP + chr2L_4_6480001 chr2L_6480001 RAL-639 126 chr2L 6537147 6537165 chr2L 6537225 6537243 5 78 2.0 2.0 2.0 1.7 96 chr2L 6537147 intron eya - chr2L 6537195 intron eya - chr2L 6537243 intron eya - chr2L_5_6535001 chr2L_6535001 RAL-639 127 chr2L 6598121 6598149 chr2L 6599078 6599106 5 953 2.0 1.0 1.5 2.0 985 chr2L 6598121 intron CG11319 - chr2L 6598614 intron CG11319 - chr2L 6599106 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-639 128 chr2L 6626884 6626919 chr2L 6626969 6627001 8 84 0.5 1.5 1.0 4.0 117 chr2L 6626884 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6627001 intron Oatp26F - chr2L_8_6625001 chr2L_6625001 RAL-639 129 chr2L 6728738 6728767 chr2L 6728822 6728851 12 84 5.0 2.0 3.5 2.7 113 chr2L 6728738 exon Liprin-alpha + chr2L 6728794 intron Liprin-alpha + chr2L 6728851 intron Liprin-alpha + chr2L_12_6725001 chr2L_6725001 RAL-639 130 chr2L 6740744 6740761 chr2L 6740828 6740848 5 86 0.0 9.5 4.8 0.9 104 chr2L 6740744 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740848 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-639 131 chr2L 6774957 6774990 chr2L 6775056 6775088 9 99 0.5 3.5 2.0 3.0 131 chr2L 6774957 intron CG17378 + chr2L 6775022 intron CG17378 + chr2L 6775088 intron CG17378 + chr2L_9_6775001 chr2L_6775001 RAL-639 132 chr2L 6799537 6799569 chr2L 6799623 6799657 9 87 0.5 1.5 1.0 4.5 120 chr2L 6799537 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799657 intergenic CR43610 +,CG17376 - chr2L_9_6795001 chr2L_6795001 RAL-639 133 chr2L 6836512 6836533 chr2L 6836591 6836615 5 81 4.5 3.0 3.8 1.0 103 chr2L 6836512 intron sens-2 + chr2L 6836564 intron sens-2 + chr2L 6836615 intron sens-2 + chr2L_5_6835001 chr2L_6835001 RAL-639 134 chr2L 6850380 6850639 chr2L 6850463 6850719 15 80 0.0 2.0 1.0 7.5 339 chr2L 6850380 intergenic not near genes chr2L 6850550 intergenic not near genes chr2L 6850719 intergenic not near genes chr2L_15_6850001 chr2L_6850001 RAL-639 135 chr2L 6876776 6876807 chr2L 6882964 6882997 diver 5 6183 3.0 1.0 2.0 1.7 6221 chr2L 6876776 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882997 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-639 136 chr2L 7090009 7090013 chr2L 7090076 7090086 4 72 3.5 2.5 3.0 1.0 77 chr2L 7090009 intergenic not near genes chr2L 7090048 intergenic not near genes chr2L 7090086 intergenic not near genes chr2L_4_7090001 chr2L_7090001 RAL-639 137 chr2L 7111780 7111788 chr2L 7111865 7111873 4 85 1.0 0.0 0.5 2.7 93 chr2L 7111780 intron Pvf3 - chr2L 7111826 intron Pvf3 - chr2L 7111873 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-639 138 chr2L 7198001 7198018 chr2L 7198080 7198097 7 79 2.0 3.0 2.5 2.0 96 chr2L 7198001 intron CG4502 - chr2L 7198049 intron CG4502 - chr2L 7198097 intron CG4502 - chr2L_7_7195001 chr2L_7195001 RAL-639 139 chr2L 7249620 7249642 chr2L 7249702 7249725 8 82 2.5 1.0 1.8 2.9 105 chr2L 7249620 intergenic Ndae1 - chr2L 7249672 intergenic Ndae1 - chr2L 7249725 intergenic Ndae1 - chr2L_8_7245001 chr2L_7245001 RAL-639 140 chr2L 7310032 7310061 chr2L 7310121 7310155 13 92 2.5 3.0 2.8 3.4 123 chr2L 7310032 intron wg + chr2L 7310094 intron wg + chr2L 7310155 intron wg + chr2L_13_7310001 chr2L_7310001 RAL-639 141 chr2L 7326487 7326493 chr2L 7326605 7326611 5 118 2.5 1.5 2.0 1.7 124 chr2L 7326487 intergenic not near genes chr2L 7326549 intergenic not near genes chr2L 7326611 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-639 142 chr2L 7343323 7343356 chr2L 7350439 7350472 roo 5 7116 3.5 4.0 3.8 1.0 7149 chr2L 7343323 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-639 143 chr2L 7399306 7399332 chr2L 7399679 7399705 6 372 1.5 3.5 2.5 1.7 399 chr2L 7399306 intergenic not near genes chr2L 7399506 intergenic not near genes chr2L 7399705 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-639 144 chr2L 7436201 7436218 chr2L 7436290 7436310 6 93 0.5 0.5 0.5 4.0 109 chr2L 7436201 intergenic not near genes chr2L 7436256 intergenic not near genes chr2L 7436310 intergenic not near genes chr2L_6_7435001 chr2L_7435001 RAL-639 145 chr2L 7447791 7447820 chr2L 7447886 7447915 7 95 0.0 0.0 0.0 7.0 124 chr2L 7447791 5` UTR santa-maria - chr2L 7447853 5` UTR santa-maria - chr2L 7447915 5` UTR santa-maria - chr2L_7_7445001 chr2L_7445001 RAL-639 146 chr2L 7449743 7449777 chr2L 7449820 7449854 9 77 0.5 1.0 0.8 5.0 111 chr2L 7449743 5` UTR santa-maria - chr2L 7449798 5` UTR santa-maria - chr2L 7449854 5` UTR santa-maria - chr2L_9_7445001 chr2L_7445001 RAL-639 147 chr2L 7489703 7489723 chr2L 7489792 7489812 5 89 1.0 1.5 1.2 2.3 109 chr2L 7489703 intron Ziz - chr2L 7489758 intron Ziz - chr2L 7489812 intron Ziz - chr2L_5_7485001 chr2L_7485001 RAL-639 148 chr2L 7867574 7867591 chr2L 7867668 7867685 7 94 4.0 2.5 3.2 1.7 111 chr2L 7867574 intron Proc - chr2L 7867630 intron Proc - chr2L 7867685 intron Proc - chr2L_7_7865001 chr2L_7865001 RAL-639 149 chr2L 7877554 7877566 chr2L 7878095 7878105 6 540 5.0 0.0 2.5 1.7 551 chr2L 7877554 intron spz3 - chr2L 7877830 intron spz3 - chr2L 7878105 intron spz3 - chr2L_6_7875001 chr2L_7875001 RAL-639 150 chr2L 7977097 7977112 chr2L 7984072 7984086 297 6 6974 0.0 6.0 3.0 1.5 6989 chr2L 7977097 intron Snoo - chr2L 7980592 intron Snoo - chr2L 7984086 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-639 151 chr2L 7997040 7997057 chr2L 7997139 7997157 4 100 5.5 1.5 3.5 0.9 117 chr2L 7997040 intron CG7227 - chr2L 7997098 intron CG7227 - chr2L 7997157 intron CG7227 - chr2L_4_7995001 chr2L_7995001 RAL-639 152 chr2L 8003052 8003069 chr2L 8003134 8003151 4 82 0.0 2.0 1.0 2.0 99 chr2L 8003052 intron Wwox - chr2L 8003102 intron Wwox - chr2L 8003151 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-639 153 chr2L 8013612 8013633 chr2L 8018816 8018837 copia 6 5204 3.5 0.5 2.0 2.0 5225 chr2L 8013612 intron Tg + chr2L 8016224 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-639 154 chr2L 8033643 8033670 chr2L 8033720 8033746 10 77 2.5 4.0 3.2 2.4 103 chr2L 8033643 intron,intron CG7367 -,Cka + chr2L 8033694 intron,intron CG7367 -,Cka + chr2L 8033746 intron,intron CG7367 -,Cka + chr2L_10_8030001 chr2L_8030001 RAL-639 155 chr2L 8166042 8166065 chr2L 8166132 8166136 5 86 2.0 1.5 1.8 1.8 94 chr2L 8166042 intron Piezo + chr2L 8166089 intron Piezo + chr2L 8166136 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-639 156 chr2L 8244740 8244748 chr2L 8244860 8244870 4 122 0.0 3.5 1.8 1.4 130 chr2L 8244740 intron CG8086 - chr2L 8244805 intron CG8086 - chr2L 8244870 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-639 157 chr2L 8351563 8351579 chr2L 8351640 8351656 5 77 0.0 1.5 0.8 2.8 93 chr2L 8351563 intergenic CG7778 + chr2L 8351610 intergenic CG7778 + chr2L 8351656 intergenic not near genes chr2L_5_8350001 chr2L_8350001 RAL-639 158 chr2L 8452418 8452446 chr2L 8461589 8461617 roo 6 9171 5.0 2.0 3.5 1.3 9199 chr2L 8452418 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461617 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-639 159 chr2L 8502662 8502689 chr2L 8502745 8502773 5 82 5.0 3.0 4.0 1.0 111 chr2L 8502662 intron Dh31 - chr2L 8502718 intron Dh31 - chr2L 8502773 intron Dh31 - chr2L_5_8500001 chr2L_8500001 RAL-639 160 chr2L 8580202 8580215 chr2L 8580283 8580296 4 81 3.5 3.5 3.5 0.9 94 chr2L 8580202 intron Sema-1a + chr2L 8580249 intron Sema-1a + chr2L 8580296 intron Sema-1a + chr2L_4_8580001 chr2L_8580001 RAL-639 161 chr2L 8605963 8605990 chr2L 8606039 8606063 11 75 2.0 0.5 1.2 5.0 100 chr2L 8605963 intron Sema-1a + chr2L 8606013 intron Sema-1a + chr2L 8606063 intron Sema-1a + chr2L_11_8605001 chr2L_8605001 RAL-639 162 chr2L 8698327 8698358 chr2L 8698466 8698497 7 139 1.0 0.0 0.5 4.7 170 chr2L 8698327 intron Hnf4 - chr2L 8698412 intron Hnf4 - chr2L 8698497 intron Hnf4 - chr2L_7_8695001 chr2L_8695001 RAL-639 163 chr2L 8723121 8723145 chr2L 8731498 8731521 Tirant 11 8376 2.0 3.5 2.8 2.9 8400 chr2L 8723121 intron raw - chr2L 8727321 intron raw - chr2L 8731521 intron raw - chr2L_11_8725001 chr2L_8725001 RAL-639 164 chr2L 8784708 8784724 chr2L 8784819 8784835 5 111 1.0 1.5 1.2 2.3 127 chr2L 8784708 intergenic not near genes chr2L 8784772 intergenic not near genes chr2L 8784835 intergenic not near genes chr2L_5_8780001 chr2L_8780001 RAL-639 165 chr2L 8789323 8789342 chr2L 8789384 8789403 9 72 2.5 2.5 2.5 2.6 80 chr2L 8789323 intergenic not near genes chr2L 8789363 intergenic not near genes chr2L 8789403 intergenic not near genes chr2L_9_8785001 chr2L_8785001 RAL-639 166 chr2L 8993214 8993239 chr2L 8993316 8993344 4 102 26.0 20.5 23.2 0.2 130 chr2L 8993214 exon CG9555 + chr2L 8993279 exon CG9555 + chr2L 8993344 3` UTR CG9555 + chr2L_4_8990001 chr2L_8990001 RAL-639 167 chr2L 9000278 9000311 chr2L 9007788 9007821 roo 5 7510 4.5 1.0 2.8 1.3 7543 chr2L 9000278 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007821 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-639 168 chr2L 9023154 9023178 chr2L 9023251 9023275 8 97 9.0 3.0 6.0 1.1 121 chr2L 9023154 intergenic not near genes chr2L 9023214 intergenic not near genes chr2L 9023275 intergenic not near genes chr2L_8_9020001 chr2L_9020001 RAL-639 169 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133321 7.0 10.5 8.8 1.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-639 170 chr2L 9158782 9158822 chr2L 9158878 9158918 6 97 2.0 0.0 1.0 3.0 136 chr2L 9158782 intron CG32982 + chr2L 9158850 intron CG32982 + chr2L 9158918 intron CG32982 + chr2L_6_9155001 chr2L_9155001 RAL-639 171 chr2L 9225849 9225872 chr2L 9225939 9225962 4 90 1.5 1.0 1.2 1.8 113 chr2L 9225849 intron tai + chr2L 9225906 intron tai + chr2L 9225962 intron tai + chr2L_4_9225001 chr2L_9225001 RAL-639 172 chr2L 9297384 9297405 chr2L 9297461 9297482 8 77 2.0 1.0 1.5 3.2 98 chr2L 9297384 3` UTR Ggamma30A + chr2L 9297433 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-639 173 chr2L 9304355 9304518 chr2L 9304439 9304597 9 79 0.5 2.5 1.5 3.6 242 chr2L 9304355 intergenic CR42844 - chr2L 9304476 3` UTR CR42844 - chr2L 9304597 3` UTR CR42844 - chr2L_9_9300001 chr2L_9300001 RAL-639 174 chr2L 9464845 9464878 chr2L 9464937 9464970 10 92 2.0 2.0 2.0 3.3 125 chr2L 9464845 intergenic not near genes chr2L 9464908 intergenic not near genes chr2L 9464970 intergenic not near genes chr2L_10_9460001 chr2L_9460001 RAL-639 175 chr2L 9474781 9474807 chr2L 9474875 9474899 6 93 0.0 2.5 1.2 2.7 118 chr2L 9474781 intergenic not near genes chr2L 9474840 intergenic not near genes chr2L 9474899 intergenic not near genes chr2L_6_9470001 chr2L_9470001 RAL-639 176 chr2L 9543760 9543782 chr2L 9543837 9543858 4 76 2.0 1.5 1.8 1.4 98 chr2L 9543760 intergenic Cpr30B +,CG13113 + chr2L 9543809 intergenic Cpr30B +,CG13113 + chr2L 9543858 intergenic Cpr30B +,CG13113 + chr2L_4_9540001 chr2L_9540001 RAL-639 177 chr2L 9631007 9631025 chr2L 9631089 9631113 5 87 2.0 2.0 2.0 1.7 106 chr2L 9631007 intergenic not near genes chr2L 9631060 intergenic not near genes chr2L 9631113 intergenic not near genes chr2L_5_9630001 chr2L_9630001 RAL-639 178 chr2L 9665608 9665632 chr2L 9665739 9665763 13 131 2.5 2.5 2.5 3.7 155 chr2L 9665608 intergenic not near genes chr2L 9665686 intergenic not near genes chr2L 9665763 intergenic not near genes chr2L_13_9665001 chr2L_9665001 RAL-639 179 chr2L 9874410 9874429 chr2L 9874489 9874492 6 77 1.0 3.0 2.0 2.0 82 chr2L 9874410 intron nAChRalpha6 - chr2L 9874451 intron nAChRalpha6 - chr2L 9874492 intron nAChRalpha6 - chr2L_6_9870001 chr2L_9870001 RAL-639 180 chr2L 9973725 9973757 chr2L 9980843 9980866 HMS-Beagle 13 7116 5.0 3.0 4.0 2.6 7141 chr2L 9973725 intergenic not near genes chr2L 9977296 intergenic not near genes chr2L 9980866 intergenic not near genes chr2L_13_9975001 chr2L_9975001 RAL-639 181 chr2L 9986357 9986383 chr2L 9986446 9986477 8 91 1.0 4.0 2.5 2.3 120 chr2L 9986357 intron bib + chr2L 9986417 intron bib + chr2L 9986477 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-639 182 chr2L 10051726 10051749 chr2L 10051811 10051829 8 83 2.5 5.5 4.0 1.6 103 chr2L 10051726 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051829 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-639 183 chr2L 10105286 10105312 chr2L 10105362 10105387 7 76 2.5 4.0 3.2 1.7 101 chr2L 10105286 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105387 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-639 184 chr2L 10133079 10133083 chr2L 10133135 10133156 4 69 1.5 1.5 1.5 1.6 77 chr2L 10133079 intron CG44153 - chr2L 10133118 intron CG44153 - chr2L 10133156 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-639 185 chr2L 10153205 10153238 chr2L 10153284 10153316 12 79 2.0 3.5 2.8 3.2 111 chr2L 10153205 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_12_10150001 chr2L_10150001 RAL-639 186 chr2L 10156329 10156352 chr2L 10163796 10163821 blood 10 7469 3.0 2.5 2.8 2.6 7492 chr2L 10156329 intron,3` UTR CG44153 -,CG4839 + chr2L 10160075 intron CG44153 - chr2L 10163821 intron CG44153 - chr2L_10_10160001 chr2L_10160001 RAL-639 187 chr2L 10176554 10176572 chr2L 10176834 10176855 6 282 2.0 2.0 2.0 2.0 301 chr2L 10176554 intron CG44153 - chr2L 10176704 intron CG44153 - chr2L 10176855 intron CG44153 - chr2L_6_10175001 chr2L_10175001 RAL-639 188 chr2L 10180584 10180606 chr2L 10180671 10180693 7 86 2.0 0.0 1.0 3.5 109 chr2L 10180584 intergenic CG44153 - chr2L 10180638 intergenic CG44153 - chr2L 10180693 intergenic CG44153 - chr2L_7_10180001 chr2L_10180001 RAL-639 189 chr2L 10227343 10227367 chr2L 10227490 10227516 4 149 0.5 4.0 2.2 1.2 173 chr2L 10227343 intergenic CG5694 - chr2L 10227430 intergenic CG5694 - chr2L 10227516 intergenic CG5694 - chr2L_4_10225001 chr2L_10225001 RAL-639 190 chr2L 10474382 10474412 chr2L 10474463 10474493 12 80 2.5 2.0 2.2 3.8 111 chr2L 10474382 intergenic RluA-1 - chr2L 10474438 intergenic RluA-1 - chr2L 10474493 intergenic RluA-1 - chr2L_12_10470001 chr2L_10470001 RAL-639 191 chr2L 10531612 10531627 chr2L 10531704 10531719 4 92 1.5 1.0 1.2 1.8 107 chr2L 10531612 3` UTR Lip4 + chr2L 10531666 3` UTR Lip4 + chr2L 10531719 3` UTR Lip4 + chr2L_4_10530001 chr2L_10530001 RAL-639 192 chr2L 10563914 10563943 chr2L 10564007 10564034 4 92 1.0 2.0 1.5 1.6 120 chr2L 10563914 intron Trim9 + chr2L 10563974 intron Trim9 + chr2L 10564034 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-639 193 chr2L 10580795 10580821 chr2L 10580876 10580902 7 77 1.5 1.5 1.5 2.8 107 chr2L 10580795 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580902 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-639 194 chr2L 10592842 10592865 chr2L 10600504 10600527 opus 6 7662 2.0 1.0 1.5 2.4 7685 chr2L 10592842 intron Trim9 + chr2L 10596684 intron Trim9 + chr2L 10600527 intron Trim9 + chr2L_6_10595001 chr2L_10595001 RAL-639 195 chr2L 10740330 10740353 chr2L 10740425 10740448 10 95 3.5 3.0 3.2 2.4 118 chr2L 10740330 3` UTR CG12299 + chr2L 10740389 3` UTR CG12299 + chr2L 10740448 3` UTR CG12299 + chr2L_10_10740001 chr2L_10740001 RAL-639 196 chr2L 10808250 10808276 chr2L 10808337 10808363 5 87 2.5 3.0 2.8 1.3 113 chr2L 10808250 intron Nos - chr2L 10808306 intron Nos - chr2L 10808363 intron Nos - chr2L_5_10805001 chr2L_10805001 RAL-639 197 chr2L 10837364 10837395 chr2L 10837447 10837479 5 84 2.0 4.5 3.2 1.2 115 chr2L 10837364 5` UTR Nos - chr2L 10837422 5` UTR Nos - chr2L 10837479 5` UTR Nos - chr2L_5_10835001 chr2L_10835001 RAL-639 198 chr2L 10862852 10862878 chr2L 10864454 10864492 Rt1c 9 1609 4.5 5.5 5.0 1.5 1640 chr2L 10862852 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864492 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-639 199 chr2L 10873051 10873081 chr2L 10873127 10873160 7 79 1.5 2.5 2.0 2.3 109 chr2L 10873051 intergenic not near genes chr2L 10873106 intergenic not near genes chr2L 10873160 intergenic not near genes chr2L_7_10870001 chr2L_10870001 RAL-639 200 chr2L 10912984 10912997 chr2L 10913062 10913075 4 78 3.5 2.0 2.8 1.1 91 chr2L 10912984 intergenic not near genes chr2L 10913030 intergenic not near genes chr2L 10913075 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-639 201 chr2L 10946951 10946976 chr2L 10956166 10956191 roo 9 9215 2.5 5.0 3.8 1.9 9240 chr2L 10946951 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-639 202 chr2L 11183787 11183808 chr2L 11183883 11183904 4 96 0.5 1.5 1.0 2.0 117 chr2L 11183787 intron Ca-beta - chr2L 11183846 intron Ca-beta - chr2L 11183904 intron Ca-beta - chr2L_4_11180001 chr2L_11180001 RAL-639 203 chr2L 11224059 11224091 chr2L 11224170 11224202 9 110 3.0 1.5 2.2 2.8 143 chr2L 11224059 intron ab + chr2L 11224130 intron ab + chr2L 11224202 intron ab + chr2L_9_11220001 chr2L_11220001 RAL-639 204 chr2L 11240504 11240521 chr2L 11240630 11240647 4 125 3.5 1.5 2.5 1.1 143 chr2L 11240504 intron ab + chr2L 11240576 intron ab + chr2L 11240647 intron ab + chr2L_4_11240001 chr2L_11240001 RAL-639 205 chr2L 11292376 11292404 chr2L 11292457 11292486 7 82 1.0 1.0 1.0 3.5 110 chr2L 11292376 intergenic not near genes chr2L 11292431 intergenic not near genes chr2L 11292486 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-639 206 chr2L 11496634 11496654 chr2L 11496712 11496732 6 78 2.0 2.5 2.2 1.9 98 chr2L 11496634 intergenic CG6488 - chr2L 11496683 intergenic CG6488 - chr2L 11496732 intergenic CG6488 - chr2L_6_11495001 chr2L_11495001 RAL-639 207 chr2L 11540585 11540616 chr2L 11547984 11548016 Tabor 4 7401 1.0 3.0 2.0 1.3 7431 chr2L 11540585 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-639 208 chr2L 11563640 11563660 chr2L 11568844 11568863 copia 6 5204 3.0 3.0 3.0 1.5 5223 chr2L 11563640 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568863 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-639 209 chr2L 11617138 11617166 chr2L 11617235 11617265 6 96 1.0 1.5 1.2 2.7 127 chr2L 11617138 intron kek2 + chr2L 11617202 intron kek2 + chr2L 11617265 intron kek2 + chr2L_6_11615001 chr2L_11615001 RAL-639 210 chr2L 11649598 11649617 chr2L 11649674 11649695 4 78 3.0 1.0 2.0 1.3 97 chr2L 11649598 intergenic not near genes chr2L 11649646 intergenic not near genes chr2L 11649695 intergenic not near genes chr2L_4_11645001 chr2L_11645001 RAL-639 211 chr2L 11713506 11713526 chr2L 11720974 11720994 blood 5 7468 5.0 1.0 3.0 1.2 7488 chr2L 11713506 intergenic not near genes chr2L 11717250 intergenic not near genes chr2L 11720994 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-639 212 chr2L 11729497 11729523 chr2L 11729585 11729610 5 88 1.0 2.5 1.8 1.8 113 chr2L 11729497 intergenic not near genes chr2L 11729554 intergenic not near genes chr2L 11729610 intergenic not near genes chr2L_5_11725001 chr2L_11725001 RAL-639 213 chr2L 11906708 11906742 chr2L 11908865 11908901 12 2159 2.0 2.5 2.2 3.8 2193 chr2L 11906708 intron Pde1c - chr2L 11907804 intron Pde1c - chr2L 11908901 intron Pde1c - chr2L_12_11905001 chr2L_11905001 RAL-639 214 chr2L 12011198 12011216 chr2L 12011422 12011440 9 223 3.5 7.0 5.2 1.5 242 chr2L 12011198 intergenic not near genes chr2L 12011319 intergenic not near genes chr2L 12011440 intergenic not near genes chr2L_9_12010001 chr2L_12010001 RAL-639 215 chr2L 12067330 12067355 chr2L 12074382 12074407 297 4 7052 1.5 1.0 1.2 1.8 7077 chr2L 12067330 intergenic not near genes chr2L 12070868 intergenic not near genes chr2L 12074407 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-639 216 chr2L 12244100 12244124 chr2L 12244211 12244235 6 111 2.0 2.0 2.0 2.0 135 chr2L 12244100 intron aret + chr2L 12244168 intron aret + chr2L 12244235 intron aret + chr2L_6_12240001 chr2L_12240001 RAL-639 217 chr2L 12272163 12272177 chr2L 12272239 12272253 5 76 0.0 0.5 0.2 4.2 90 chr2L 12272163 intron aret + chr2L 12272208 intron aret + chr2L 12272253 intron aret + chr2L_5_12270001 chr2L_12270001 RAL-639 218 chr2L 12424361 12424376 chr2L 12424437 12424452 4 76 0.0 0.0 0.0 4.0 91 chr2L 12424361 intergenic not near genes chr2L 12424406 intergenic CG6405 + chr2L 12424452 intergenic CG6405 + chr2L_4_12420001 chr2L_12420001 RAL-639 219 chr2L 12426132 12426160 chr2L 12426215 12426243 9 83 3.5 4.0 3.8 1.9 111 chr2L 12426132 exon CG6405 + chr2L 12426188 exon CG6405 + chr2L 12426243 exon CG6405 + chr2L_9_12425001 chr2L_12425001 RAL-639 220 chr2L 12481389 12481406 chr2L 12481471 12481488 4 82 0.5 7.0 3.8 0.8 99 chr2L 12481389 intron bun - chr2L 12481438 intron bun - chr2L 12481488 intron bun - chr2L_4_12480001 chr2L_12480001 RAL-639 221 chr2L 12529239 12529264 chr2L 12529391 12529416 5 152 1.0 1.5 1.2 2.3 177 chr2L 12529239 intron bun - chr2L 12529328 intron bun - chr2L 12529416 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-639 222 chr2L 12728918 12728951 chr2L 12729161 12729185 pogo 6 241 1.5 1.5 1.5 2.4 267 chr2L 12728918 intron MRP + chr2L 12729052 intron MRP + chr2L 12729185 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-639 223 chr2L 12731059 12731090 chr2L 12735826 12735857 F-element 5 4766 3.5 1.5 2.5 1.4 4798 chr2L 12731059 intron MRP + chr2L 12733458 intron MRP + chr2L 12735857 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-639 224 chr2L 12751324 12751340 chr2L 12751407 12751420 6 82 2.5 5.5 4.0 1.2 96 chr2L 12751324 intergenic not near genes chr2L 12751372 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-639 225 chr2L 12766760 12766774 chr2L 12766838 12766852 5 77 0.5 1.0 0.8 2.8 92 chr2L 12766760 intergenic not near genes chr2L 12766806 intergenic not near genes chr2L 12766852 intergenic not near genes chr2L_5_12765001 chr2L_12765001 RAL-639 226 chr2L 12861693 12861727 chr2L 12863160 12863181 hobo 13 1464 3.0 2.5 2.8 3.4 1488 chr2L 12861693 intergenic not near genes chr2L 12862437 intergenic not near genes chr2L 12863181 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-639 227 chr2L 12894021 12894054 chr2L 12895488 12895495 hobo 5 1462 3.0 5.0 4.0 1.0 1474 chr2L 12894021 intergenic not near genes chr2L 12894758 intergenic not near genes chr2L 12895495 intergenic not near genes chr2L_5_12890001 chr2L_12890001 RAL-639 228 chr2L 12933853 12933882 chr2L 12941320 12941349 blood 10 7467 2.5 1.5 2.0 3.3 7496 chr2L 12933853 intergenic not near genes chr2L 12937601 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-639 229 chr2L 13043407 13043435 chr2L 13043484 13043513 5 78 0.5 1.5 1.0 2.5 106 chr2L 13043407 intron CG9932 - chr2L 13043460 intron CG9932 - chr2L 13043513 intron CG9932 - chr2L_5_13040001 chr2L_13040001 RAL-639 230 chr2L 13215385 13215410 chr2L 13215660 13215685 6 275 1.0 1.5 1.2 2.7 300 chr2L 13215385 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215535 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215685 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_6_13215001 chr2L_13215001 RAL-639 231 chr2L 13231886 13231915 chr2L 13231997 13232026 13 111 2.0 3.0 2.5 3.7 140 chr2L 13231886 intergenic Prosalpha6T + chr2L 13231956 intergenic Prosalpha6T + chr2L 13232026 intergenic Prosalpha6T + chr2L_13_13230001 chr2L_13230001 RAL-639 232 chr2L 13405647 13405679 chr2L 13410443 13410476 Doc 14 4796 3.0 2.0 2.5 4.0 4829 chr2L 13405647 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-639 233 chr2L 13422487 13422506 chr2L 13422548 13422585 7 76 0.0 3.5 1.8 2.5 98 chr2L 13422487 intron CG42784 + chr2L 13422536 intron CG42784 + chr2L 13422585 intron CG42784 + chr2L_7_13420001 chr2L_13420001 RAL-639 234 chr2L 13449465 13449495 chr2L 13456901 13456931 Quasimodo 6 7436 5.5 3.0 4.2 1.2 7466 chr2L 13449465 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456931 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-639 235 chr2L 13481446 13481476 chr2L 13482053 13482083 jockey 8 607 5.0 3.0 4.0 1.6 637 chr2L 13481446 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482083 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-639 236 chr2L 13560401 13560420 chr2L 13565216 13565240 F-element 5 4820 2.5 2.5 2.5 1.4 4839 chr2L 13560401 intron kuz + chr2L 13562820 intron kuz + chr2L 13565240 intron kuz + chr2L_5_13560001 chr2L_13560001 RAL-639 237 chr2L 13605052 13605078 chr2L 13605127 13605140 6 73 2.0 1.0 1.5 2.4 88 chr2L 13605052 intron kuz + chr2L 13605096 intron kuz + chr2L 13605140 intron kuz + chr2L_6_13605001 chr2L_13605001 RAL-639 238 chr2L 13673692 13673715 chr2L 13673773 13673795 5 81 2.0 1.0 1.5 2.0 103 chr2L 13673692 intergenic not near genes chr2L 13673744 intergenic not near genes chr2L 13673795 intergenic not near genes chr2L_5_13670001 chr2L_13670001 RAL-639 239 chr2L 13701896 13701904 chr2L 13701976 13701983 4 78 4.0 2.0 3.0 1.0 87 chr2L 13701896 intron CG31814 - chr2L 13701940 intron CG31814 - chr2L 13701983 intron CG31814 - chr2L_4_13700001 chr2L_13700001 RAL-639 240 chr2L 13761814 13761835 chr2L 13762917 13762931 Doc 7 1107 0.5 1.0 0.8 3.9 1117 chr2L 13761814 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762931 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-639 241 chr2L 13853091 13853112 chr2L 13862241 13862262 roo 9 9150 2.5 2.0 2.2 2.8 9171 chr2L 13853091 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862262 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-639 242 chr2L 13913591 13913605 chr2L 13913704 13913718 4 113 4.0 2.0 3.0 1.0 127 chr2L 13913591 intergenic not near genes chr2L 13913654 intergenic not near genes chr2L 13913718 intergenic not near genes chr2L_4_13910001 chr2L_13910001 RAL-639 243 chr2L 14010408 14010432 chr2L 14010481 14010508 8 75 2.5 1.0 1.8 2.9 100 chr2L 14010408 intergenic not near genes chr2L 14010458 intergenic not near genes chr2L 14010508 intergenic not near genes chr2L_8_14010001 chr2L_14010001 RAL-639 244 chr2L 14170014 14170025 chr2L 14170097 14170109 4 84 2.5 4.5 3.5 0.9 95 chr2L 14170014 intron CG43333 - chr2L 14170062 intron CG43333 - chr2L 14170109 intron CG43333 - chr2L_4_14170001 chr2L_14170001 RAL-639 245 chr2L 14222304 14222330 chr2L 14222391 14222417 5 87 0.5 2.5 1.5 2.0 113 chr2L 14222304 intron Dyrk2 - chr2L 14222360 intron Dyrk2 - chr2L 14222417 intron Dyrk2 - chr2L_5_14220001 chr2L_14220001 RAL-639 246 chr2L 14253383 14253414 chr2L 14253488 14253520 9 106 3.0 1.0 2.0 3.0 137 chr2L 14253383 intergenic not near genes chr2L 14253452 intergenic not near genes chr2L 14253520 intergenic not near genes chr2L_9_14250001 chr2L_14250001 RAL-639 247 chr2L 14311484 14311518 chr2L 14311572 14311606 9 88 0.5 0.0 0.2 7.5 122 chr2L 14311484 intron wb + chr2L 14311545 intron wb + chr2L 14311606 intron wb + chr2L_9_14310001 chr2L_14310001 RAL-639 248 chr2L 14532219 14532227 chr2L 14532283 14532304 4 72 2.5 5.0 3.8 0.8 85 chr2L 14532219 intergenic CR44852 - chr2L 14532262 intergenic CR44852 - chr2L 14532304 intergenic CR44852 - chr2L_4_14530001 chr2L_14530001 RAL-639 249 chr2L 14574995 14575006 chr2L 14575082 14575093 5 87 1.5 3.5 2.5 1.4 98 chr2L 14574995 intergenic not near genes chr2L 14575044 intergenic not near genes chr2L 14575093 intergenic not near genes chr2L_5_14575001 chr2L_14575001 RAL-639 250 chr2L 14588394 14588416 chr2L 14588547 14588569 4 154 0.5 2.0 1.2 1.8 175 chr2L 14588394 intergenic CG42680 - chr2L 14588482 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-639 251 chr2L 14590197 14590219 chr2L 14590276 14590299 7 77 0.5 5.0 2.8 1.8 102 chr2L 14590197 intergenic not near genes chr2L 14590248 intergenic not near genes chr2L 14590299 intergenic not near genes chr2L_7_14590001 chr2L_14590001 RAL-639 252 chr2L 14617894 14617910 chr2L 14617974 14617990 5 79 3.0 4.5 3.8 1.0 96 chr2L 14617894 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617942 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617990 intron,intron,intron osp -,Adh +,Adhr + chr2L_5_14615001 chr2L_14615001 RAL-639 253 chr2L 14778822 14778830 chr2L 14779109 14779117 4 288 4.0 7.5 5.8 0.6 295 chr2L 14778822 intergenic not near genes chr2L 14778970 intergenic not near genes chr2L 14779117 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-639 254 chr2L 14967413 14967443 chr2L 14967497 14967527 5 84 1.5 1.5 1.5 2.0 114 chr2L 14967413 intron CG42313 - chr2L 14967470 intron CG42313 - chr2L 14967527 intron CG42313 - chr2L_5_14965001 chr2L_14965001 RAL-639 255 chr2L 14996425 14996458 chr2L 14996511 14996544 6 86 2.0 2.5 2.2 1.9 119 chr2L 14996425 intron mol - chr2L 14996484 intron mol - chr2L 14996544 intron mol - chr2L_6_14995001 chr2L_14995001 RAL-639 256 chr2L 15004178 15004198 chr2L 15004266 15004285 7 88 3.0 1.0 2.0 2.3 107 chr2L 15004178 intergenic not near genes chr2L 15004232 intergenic not near genes chr2L 15004285 intergenic not near genes chr2L_7_15000001 chr2L_15000001 RAL-639 257 chr2L 15026020 15026052 chr2L 15026100 15026133 9 81 5.0 2.5 3.8 1.9 113 chr2L 15026020 exon GABA-B-R1 + chr2L 15026076 intron GABA-B-R1 + chr2L 15026133 intron GABA-B-R1 + chr2L_9_15025001 chr2L_15025001 RAL-639 258 chr2L 15254208 15254238 chr2L 15254280 15254315 5 75 2.0 1.5 1.8 1.8 107 chr2L 15254208 3` UTR dao + chr2L 15254262 3` UTR dao + chr2L 15254315 3` UTR dao + chr2L_5_15250001 chr2L_15250001 RAL-639 259 chr2L 15355732 15355744 chr2L 15355810 15355822 5 77 1.0 2.5 1.8 1.8 90 chr2L 15355732 intergenic not near genes chr2L 15355777 intergenic not near genes chr2L 15355822 intergenic not near genes chr2L_5_15355001 chr2L_15355001 RAL-639 260 chr2L 15446061 15446081 chr2L 15453530 15453550 blood 6 7469 2.0 2.0 2.0 2.0 7489 chr2L 15446061 intergenic not near genes chr2L 15449806 intergenic not near genes chr2L 15453550 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-639 261 chr2L 15510937 15510962 chr2L 15511031 15511056 10 94 2.5 3.0 2.8 2.6 119 chr2L 15510937 intergenic not near genes chr2L 15510996 intergenic not near genes chr2L 15511056 intergenic not near genes chr2L_10_15510001 chr2L_15510001 RAL-639 262 chr2L 15907636 15907665 chr2L 15907718 15907747 8 82 2.5 0.0 1.2 3.6 111 chr2L 15907636 intron beat-Ib - chr2L 15907692 intron beat-Ib - chr2L 15907747 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-639 263 chr2L 15950390 15950412 chr2L 15950467 15950490 8 77 2.0 1.5 1.8 2.9 100 chr2L 15950390 intron beat-Ib - chr2L 15950440 intron beat-Ib - chr2L 15950490 intron beat-Ib - chr2L_8_15950001 chr2L_15950001 RAL-639 264 chr2L 15956027 15956060 chr2L 15957491 15957525 hobo 4 1466 1.5 3.5 2.5 1.1 1498 chr2L 15956027 intron beat-Ib - chr2L 15956776 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-639 265 chr2L 15960032 15960056 chr2L 15960122 15960146 4 88 0.0 1.0 0.5 2.7 114 chr2L 15960032 intron beat-Ib - chr2L 15960089 intron beat-Ib - chr2L 15960146 intron beat-Ib - chr2L_4_15960001 chr2L_15960001 RAL-639 266 chr2L 16001474 16001490 chr2L 16001562 16001578 5 88 0.5 3.0 1.8 1.8 104 chr2L 16001474 intron beat-Ic + chr2L 16001526 intron beat-Ic + chr2L 16001578 intron beat-Ic + chr2L_5_16000001 chr2L_16000001 RAL-639 267 chr2L 16058130 16058146 chr2L 16058271 16058286 4 141 1.5 3.0 2.2 1.2 156 chr2L 16058130 intron beat-Ia + chr2L 16058208 intron beat-Ia + chr2L 16058286 intron beat-Ia + chr2L_4_16055001 chr2L_16055001 RAL-639 268 chr2L 16064324 16064335 chr2L 16064401 16064412 4 77 2.0 2.5 2.2 1.2 88 chr2L 16064324 intron beat-Ia + chr2L 16064368 intron beat-Ia + chr2L 16064412 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-639 269 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 13.0 10.5 11.8 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-639 270 chr2L 16091636 16091655 chr2L 16091720 16091740 6 84 3.5 0.0 1.8 2.1 104 chr2L 16091636 intergenic not near genes chr2L 16091688 intergenic not near genes chr2L 16091740 intergenic not near genes chr2L_6_16090001 chr2L_16090001 RAL-639 271 chr2L 16141164 16141193 chr2L 16146371 16146400 copia 5 5207 1.5 1.5 1.5 2.0 5236 chr2L 16141164 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146400 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-639 272 chr2L 9084339 9084340 chr2L 16217660 16217660 6 7133320 7.0 10.5 8.8 0.6 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-639 273 chr2L 16243229 16243373 chr2L 16243304 16243453 4 78 1.0 3.0 2.0 1.3 224 chr2L 16243229 exon CG42818 + chr2L 16243341 exon CG42818 + chr2L 16243453 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-639 274 chr2L 16280251 16280287 chr2L 16281419 16281455 1360 9 1167 3.5 6.5 5.0 1.5 1204 chr2L 16280251 intron crp - chr2L 16280853 intron crp - chr2L 16281455 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-639 275 chr2L 16443986 16444020 chr2L 16444063 16444096 9 76 4.5 1.0 2.8 2.4 110 chr2L 16443986 intron CG5888 - chr2L 16444041 intron CG5888 - chr2L 16444096 intron CG5888 - chr2L_9_16440001 chr2L_16440001 RAL-639 276 chr2L 16498153 16498179 chr2L 16498334 16498360 7 181 1.0 2.0 1.5 2.8 207 chr2L 16498153 intron Tpr2 + chr2L 16498256 intron Tpr2 + chr2L 16498360 intron Tpr2 + chr2L_7_16495001 chr2L_16495001 RAL-639 277 chr2L 16504990 16505017 chr2L 16505099 16505127 5 109 0.0 2.0 1.0 2.5 137 chr2L 16504990 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505127 intron Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-639 278 chr2L 16507943 16507959 chr2L 16508030 16508046 5 87 0.0 1.5 0.8 2.8 103 chr2L 16507943 intergenic CG5953 -,Tpr2 + chr2L 16507994 intergenic CG5953 -,Tpr2 + chr2L 16508046 intergenic CG5953 -,Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-639 279 chr2L 16629516 16629543 chr2L 16629621 16629648 7 105 2.5 3.0 2.8 1.8 132 chr2L 16629516 intron CG42389 + chr2L 16629582 intron CG42389 + chr2L 16629648 intron CG42389 + chr2L_7_16625001 chr2L_16625001 RAL-639 280 chr2L 16645214 16645230 chr2L 16645658 16645674 4 444 0.0 4.0 2.0 1.3 460 chr2L 16645214 intron CG42389 + chr2L 16645444 intron CG42389 + chr2L 16645674 intron CG42389 + chr2L_4_16645001 chr2L_16645001 RAL-639 281 chr2L 16670438 16670447 chr2L 16670515 16670524 5 76 2.0 4.5 3.2 1.2 86 chr2L 16670438 intron Trpgamma - chr2L 16670481 intron Trpgamma - chr2L 16670524 intron Trpgamma - chr2L_5_16670001 chr2L_16670001 RAL-639 282 chr2L 16694320 16694340 chr2L 16694429 16694448 5 109 0.0 4.0 2.0 1.7 128 chr2L 16694320 intron grp + chr2L 16694384 intron grp + chr2L 16694448 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-639 283 chr2L 16721026 16721051 chr2L 16721103 16721128 10 77 4.0 1.0 2.5 2.9 102 chr2L 16721026 intron Cyt-c-p + chr2L 16721077 intron Cyt-c-p + chr2L 16721128 intron Cyt-c-p + chr2L_10_16720001 chr2L_16720001 RAL-639 284 chr2L 16728922 16728953 chr2L 16729557 16729588 4 635 2.0 1.0 1.5 1.6 666 chr2L 16728922 intergenic not near genes chr2L 16729255 intergenic not near genes chr2L 16729588 intergenic CG31812 + chr2L_4_16725001 chr2L_16725001 RAL-639 285 chr2L 16852787 16852857 chr2L 16859929 16859970 Doc4-element 5 7136 4.0 2.0 3.0 1.2 7183 chr2L 16852787 intergenic CG31810 - chr2L 16856378 intron CG31809 - chr2L 16859970 intergenic CG6012 - chr2L_5_16855001 chr2L_16855001 RAL-639 286 chr2L 16958106 16958133 chr2L 16962894 16962921 Doc 8 4788 0.5 1.5 1.0 4.0 4815 chr2L 16958106 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962921 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-639 287 chr2L 16993607 16993629 chr2L 16993693 16993716 5 87 0.5 2.5 1.5 2.0 109 chr2L 16993607 3` UTR beat-IIIb + chr2L 16993662 3` UTR beat-IIIb + chr2L 16993716 3` UTR beat-IIIb + chr2L_5_16990001 chr2L_16990001 RAL-639 288 chr2L 17000118 17000147 chr2L 17000240 17000268 7 122 1.5 1.5 1.5 2.8 150 chr2L 17000118 intergenic not near genes chr2L 17000193 intergenic not near genes chr2L 17000268 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-639 289 chr2L 17016862 17016873 chr2L 17016938 17016949 4 76 1.0 4.5 2.8 1.1 87 chr2L 17016862 intergenic not near genes chr2L 17016906 intergenic not near genes chr2L 17016949 intergenic not near genes chr2L_4_17015001 chr2L_17015001 RAL-639 290 chr2L 17158728 17158761 chr2L 17158830 17158862 8 101 1.5 2.5 2.0 2.7 134 chr2L 17158728 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158795 intron,intron CG34106 +,beat-IIIa + chr2L 17158862 intron,intron CG34106 +,beat-IIIa + chr2L_8_17155001 chr2L_17155001 RAL-639 291 chr2L 17168194 17168220 chr2L 17168972 17168997 7 777 2.5 2.0 2.2 2.2 803 chr2L 17168194 intron,intron CG34106 +,beat-IIIa + chr2L 17168596 intron,intron CG34106 +,beat-IIIa + chr2L 17168997 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-639 292 chr2L 17216693 17216723 chr2L 17216899 17216929 8 202 3.5 1.5 2.5 2.3 236 chr2L 17216693 intron beat-IIIc - chr2L 17216811 intron beat-IIIc - chr2L 17216929 intron beat-IIIc - chr2L_8_17215001 chr2L_17215001 RAL-639 293 chr2L 17273197 17273217 chr2L 17277978 17278000 F-element 5 4782 2.5 1.5 2.0 1.7 4803 chr2L 17273197 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-639 294 chr2L 17424709 17424729 chr2L 17424821 17424841 5 112 0.5 2.0 1.2 2.3 132 chr2L 17424709 intron Dif - chr2L 17424775 intron Dif - chr2L 17424841 intron Dif - chr2L_5_17420001 chr2L_17420001 RAL-639 295 chr2L 17432637 17432666 chr2L 17432713 17432729 6 74 0.0 2.0 1.0 3.0 92 chr2L 17432637 intron Dif - chr2L 17432683 intron Dif - chr2L 17432729 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-639 296 chr2L 17466423 17466453 chr2L 17466515 17466546 11 93 0.0 2.5 1.2 5.0 123 chr2L 17466423 intron BicD - chr2L 17466484 intron BicD - chr2L 17466546 intron BicD - chr2L_11_17465001 chr2L_17465001 RAL-639 297 chr2L 17503224 17503251 chr2L 17503301 17503328 7 77 2.5 1.0 1.8 2.5 104 chr2L 17503224 intron Dhc36C + chr2L 17503276 intron Dhc36C + chr2L 17503328 intron Dhc36C + chr2L_7_17500001 chr2L_17500001 RAL-639 298 chr2L 17533436 17533445 chr2L 17533523 17533532 5 87 1.5 0.0 0.8 2.8 96 chr2L 17533436 intergenic not near genes chr2L 17533484 intergenic not near genes chr2L 17533532 intergenic not near genes chr2L_5_17530001 chr2L_17530001 RAL-639 299 chr2L 17613468 17613483 chr2L 17613665 17613680 4 196 2.5 2.5 2.5 1.1 212 chr2L 17613468 intergenic not near genes chr2L 17613574 intergenic not near genes chr2L 17613680 intergenic not near genes chr2L_4_17610001 chr2L_17610001 RAL-639 300 chr2L 17769273 17769434 chr2L 17769355 17769532 4 86 3.0 0.5 1.8 1.4 259 chr2L 17769273 intron CadN - chr2L 17769402 intron CadN - chr2L 17769532 intron CadN - chr2L_4_17765001 chr2L_17765001 RAL-639 301 chr2L 17773171 17773203 chr2L 17773328 17773360 10 157 1.5 1.0 1.2 4.5 189 chr2L 17773171 intron CadN - chr2L 17773266 intron CadN - chr2L 17773360 intron CadN - chr2L_10_17770001 chr2L_17770001 RAL-639 302 chr2L 17796031 17796045 chr2L 17796112 17796126 4 80 1.0 1.0 1.0 2.0 95 chr2L 17796031 intron CadN2 - chr2L 17796078 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_4_17795001 chr2L_17795001 RAL-639 303 chr2L 17819922 17819946 chr2L 17825125 17825149 copia 4 5202 1.0 2.0 1.5 1.6 5227 chr2L 17819922 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825149 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-639 304 chr2L 17859613 17859642 chr2L 17859699 17859728 7 86 2.5 2.0 2.2 2.2 115 chr2L 17859613 intron CadN2 - chr2L 17859670 intron CadN2 - chr2L 17859728 intron CadN2 - chr2L_7_17855001 chr2L_17855001 RAL-639 305 chr2L 17951945 17951982 chr2L 17953411 17953449 hobo 11 1467 2.5 6.0 4.2 2.1 1504 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953449 intergenic not near genes chr2L_11_17950001 chr2L_17950001 RAL-639 306 chr2L 17955868 17955891 chr2L 17955960 17955983 8 92 2.5 2.5 2.5 2.3 115 chr2L 17955868 intergenic not near genes chr2L 17955926 intergenic not near genes chr2L 17955983 intergenic not near genes chr2L_8_17955001 chr2L_17955001 RAL-639 307 chr2L 18026996 18027015 chr2L 18027336 18027355 5 340 1.5 3.5 2.5 1.4 359 chr2L 18026996 5` UTR rdo + chr2L 18027176 intron rdo + chr2L 18027355 intron rdo + chr2L_5_18025001 chr2L_18025001 RAL-639 308 chr2L 18040733 18040759 chr2L 18040822 18040848 8 89 1.0 5.5 3.2 1.9 115 chr2L 18040733 intron rdo + chr2L 18040790 intron rdo + chr2L 18040848 intron rdo + chr2L_8_18040001 chr2L_18040001 RAL-639 309 chr2L 18041431 18041459 chr2L 18041699 18041728 10 269 3.5 2.0 2.8 2.6 297 chr2L 18041431 intron rdo + chr2L 18041580 intron rdo + chr2L 18041728 intron rdo + chr2L_10_18040001 chr2L_18040001 RAL-639 310 chr2L 18047038 18047053 chr2L 18047120 18047133 5 82 4.5 5.5 5.0 0.8 95 chr2L 18047038 intron rdo + chr2L 18047086 intron rdo + chr2L 18047133 intron rdo + chr2L_5_18045001 chr2L_18045001 RAL-639 311 chr2L 18051874 18051896 chr2L 18061020 18061041 roo 5 9146 4.0 1.0 2.5 1.4 9167 chr2L 18051874 intron rdo + chr2L 18056458 intron rdo + chr2L 18061041 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-639 312 chr2L 18218619 18218629 chr2L 18218705 18218716 4 87 1.5 3.0 2.2 1.2 97 chr2L 18218619 intron CG42750 - chr2L 18218668 intron CG42750 - chr2L 18218716 intron CG42750 - chr2L_4_18215001 chr2L_18215001 RAL-639 313 chr2L 18243368 18243401 chr2L 18243445 18243478 7 77 2.5 1.0 1.8 2.5 110 chr2L 18243368 intron CG42750 - chr2L 18243423 intron CG42750 - chr2L 18243478 intron CG42750 - chr2L_7_18240001 chr2L_18240001 RAL-639 314 chr2L 18306766 18306786 chr2L 18307123 18307141 9 356 3.0 1.0 2.0 3.0 375 chr2L 18306766 intergenic not near genes chr2L 18306954 intergenic not near genes chr2L 18307141 intergenic not near genes chr2L_9_18305001 chr2L_18305001 RAL-639 315 chr2L 18334613 18334645 chr2L 18334698 18334730 7 82 1.0 3.0 2.0 2.3 117 chr2L 18334613 intron Fas3 + chr2L 18334672 intron Fas3 + chr2L 18334730 intron Fas3 + chr2L_7_18330001 chr2L_18330001 RAL-639 316 chr2L 18538565 18538593 chr2L 18538647 18538674 8 81 0.0 1.5 0.8 4.4 109 chr2L 18538565 intron Pde11 - chr2L 18538620 intron Pde11 - chr2L 18538674 intron Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-639 317 chr2L 16217660 16217660 chr2L 18622718 18622719 8 2405058 10.0 9.5 9.8 0.7 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_8_17420001 chr2L_17420001 RAL-639 318 chr2L 18664583 18664611 chr2L 18664659 18664684 8 76 1.5 3.5 2.5 2.3 101 chr2L 18664583 intergenic not near genes chr2L 18664634 intergenic not near genes chr2L 18664684 intergenic not near genes chr2L_8_18660001 chr2L_18660001 RAL-639 319 chr2L 18812556 18812590 chr2L 18812819 18812853 11 263 1.5 2.5 2.0 3.7 297 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_11_18810001 chr2L_18810001 RAL-639 320 chr2L 18883855 18883886 chr2L 18883937 18883968 5 78 1.0 3.5 2.2 1.6 113 chr2L 18883855 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883968 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-639 321 chr2L 18904337 18904365 chr2L 18904426 18904455 8 90 1.5 2.0 1.8 2.9 118 chr2L 18904337 intergenic not near genes chr2L 18904396 intergenic not near genes chr2L 18904455 intergenic not near genes chr2L_8_18900001 chr2L_18900001 RAL-639 322 chr2L 19016252 19016271 chr2L 19016348 19016367 5 96 1.5 2.0 1.8 1.8 115 chr2L 19016252 intergenic not near genes chr2L 19016310 intergenic not near genes chr2L 19016367 intergenic not near genes chr2L_5_19015001 chr2L_19015001 RAL-639 323 chr2L 19024096 19024097 chr2L 21768291 21768293 9 2744195 17.0 10.0 13.5 0.6 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_9_20395001 chr2L_20395001 RAL-639 324 chr2L 19035918 19035949 chr2L 19036008 19036039 8 90 3.0 2.0 2.5 2.3 121 chr2L 19035918 intron mib2 + chr2L 19035978 intron mib2 + chr2L 19036039 intron mib2 + chr2L_8_19035001 chr2L_19035001 RAL-639 325 chr2L 19122776 19122802 chr2L 19122855 19122881 6 79 4.5 3.5 4.0 1.2 105 chr2L 19122776 exon l(2)37Cc - chr2L 19122828 intron l(2)37Cc - chr2L 19122881 intron l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-639 326 chr2L 19147369 19147403 chr2L 19154404 19154437 297 9 7034 1.0 2.0 1.5 3.6 7068 chr2L 19147369 intron brat + chr2L 19150903 intron brat + chr2L 19154437 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-639 327 chr2L 19251692 19251718 chr2L 19251792 19251818 10 100 5.5 2.0 3.8 2.1 126 chr2L 19251692 intergenic not near genes chr2L 19251755 intergenic not near genes chr2L 19251818 intergenic not near genes chr2L_10_19250001 chr2L_19250001 RAL-639 328 chr2L 19345013 19345049 chr2L 19357222 19357257 blood 10 12206 2.5 2.0 2.2 3.1 12244 chr2L 19345013 intron dnt - chr2L 19351135 intron dnt - chr2L 19357257 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-639 329 chr2L 19357545 19357566 chr2L 19357635 19357655 7 89 2.5 3.0 2.8 1.8 110 chr2L 19357545 intron dnt - chr2L 19357600 intron dnt - chr2L 19357655 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-639 330 chr2L 19378338 19378370 chr2L 19378421 19378453 11 83 3.0 3.0 3.0 2.8 115 chr2L 19378338 intergenic not near genes chr2L 19378396 intergenic not near genes chr2L 19378453 intergenic not near genes chr2L_11_19375001 chr2L_19375001 RAL-639 331 chr2L 19405618 19405640 chr2L 19405708 19405729 5 90 0.5 1.5 1.0 2.5 111 chr2L 19405618 intron Pax - chr2L 19405674 intron Pax - chr2L 19405729 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-639 332 chr2L 19407716 19407733 chr2L 19407913 19407930 11 197 5.5 4.0 4.8 1.9 214 chr2L 19407716 intron Pax - chr2L 19407823 intron Pax - chr2L 19407930 intron Pax - chr2L_11_19405001 chr2L_19405001 RAL-639 333 chr2L 19441069 19441088 chr2L 19441146 19441164 5 77 3.5 3.0 3.2 1.2 95 chr2L 19441069 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441164 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-639 334 chr2L 19466838 19466853 chr2L 19466916 19466932 5 79 1.5 2.0 1.8 1.8 94 chr2L 19466838 3` UTR tj + chr2L 19466885 3` UTR tj + chr2L 19466932 3` UTR tj + chr2L_5_19465001 chr2L_19465001 RAL-639 335 chr2L 19486886 19486911 chr2L 19486965 19486990 6 79 4.5 4.0 4.2 1.2 104 chr2L 19486886 intergenic CG13084 + chr2L 19486938 intergenic CG13084 + chr2L 19486990 intergenic CG13084 +,CG13083 + chr2L_6_19485001 chr2L_19485001 RAL-639 336 chr2L 19560003 19560037 chr2L 19560256 19560289 7 253 1.0 1.5 1.2 3.2 286 chr2L 19560003 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-639 337 chr2L 19620093 19620132 chr2L 19621082 19621120 jockey 9 986 3.0 6.5 4.8 1.6 1027 chr2L 19620093 intron Lar + chr2L 19620606 intron Lar + chr2L 19621120 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-639 338 chr2L 19630979 19631008 chr2L 19631550 19631578 12 570 1.5 3.5 2.5 3.4 599 chr2L 19630979 intron Lar + chr2L 19631278 intron Lar + chr2L 19631578 intron Lar + chr2L_12_19630001 chr2L_19630001 RAL-639 339 chr2L 19638533 19638561 chr2L 19638620 19638648 9 88 5.5 2.0 3.8 1.9 115 chr2L 19638533 intron Lar + chr2L 19638590 intron Lar + chr2L 19638648 intron Lar + chr2L_9_19635001 chr2L_19635001 RAL-639 340 chr2L 19652569 19652603 chr2L 19674005 19674039 opus 6 21436 1.5 1.0 1.2 2.7 21470 chr2L 19652569 intron Lar + chr2L 19663304 intron Lar + chr2L 19674039 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-639 341 chr2L 19703538 19703568 chr2L 19712674 19712704 roo 11 9136 3.5 1.5 2.5 3.1 9166 chr2L 19703538 intron Lar + chr2L 19708121 intron Lar + chr2L 19712704 intron Lar + chr2L_11_19705001 chr2L_19705001 RAL-639 342 chr2L 19754872 19754899 chr2L 19754956 19754983 8 83 1.5 2.5 2.0 2.7 111 chr2L 19754872 intron CG10631 - chr2L 19754928 intron CG10631 - chr2L 19754983 intron CG10631 - chr2L_8_19750001 chr2L_19750001 RAL-639 343 chr2L 19762810 19762840 chr2L 19763052 19763082 pogo 8 241 3.0 3.0 3.0 2.0 272 chr2L 19762810 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763082 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-639 344 chr2L 19821795 19821816 chr2L 19821872 19821893 6 77 1.5 2.0 1.8 2.1 98 chr2L 19821795 intron sick + chr2L 19821844 intron sick + chr2L 19821893 intron sick + chr2L_6_19820001 chr2L_19820001 RAL-639 345 chr2L 19878988 19879011 chr2L 19879197 19879212 8 208 2.0 3.5 2.8 2.1 224 chr2L 19878988 intron sick + chr2L 19879100 intron sick + chr2L 19879212 intron sick + chr2L_8_19875001 chr2L_19875001 RAL-639 346 chr2L 19901491 19901508 chr2L 19901594 19901611 4 103 6.5 3.0 4.8 0.7 120 chr2L 19901491 intron sick + chr2L 19901551 intron sick + chr2L 19901611 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-639 347 chr2L 19911291 19911325 chr2L 19911376 19911413 12 87 1.5 2.0 1.8 4.3 122 chr2L 19911291 intron,3` UTR sick +,CR43097 - chr2L 19911352 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_12_19910001 chr2L_19910001 RAL-639 348 chr2L 19994651 19994673 chr2L 19994731 19994752 10 79 5.0 1.5 3.2 2.4 101 chr2L 19994651 intron CG43861 - chr2L 19994702 intron CG43861 - chr2L 19994752 intron CG43861 - chr2L_10_19990001 chr2L_19990001 RAL-639 349 chr2L 20000053 20000076 chr2L 20000141 20000162 4 88 1.0 3.0 2.0 1.3 109 chr2L 20000053 intron CG43861 - chr2L 20000108 intron CG43861 - chr2L 20000162 intron,3` UTR CG43861 -,CR44908 - chr2L_4_20000001 chr2L_20000001 RAL-639 350 chr2L 20003741 20003755 chr2L 20004763 20004786 5 1027 4.5 5.0 4.8 0.9 1045 chr2L 20003741 intron CG43861 - chr2L 20004264 intron CG43861 - chr2L 20004786 intron CG43861 - chr2L_5_20000001 chr2L_20000001 RAL-639 351 chr2L 20005877 20005905 chr2L 20010953 20010980 flea 8 5075 3.0 3.5 3.2 1.9 5103 chr2L 20005877 intron CG43861 - chr2L 20008428 intron CG43861 - chr2L 20010980 intron CG43861 - chr2L_8_20005001 chr2L_20005001 RAL-639 352 chr2L 20022089 20022123 chr2L 20022202 20022235 7 113 0.5 1.5 1.0 3.5 146 chr2L 20022089 intergenic not near genes chr2L 20022162 intergenic not near genes chr2L 20022235 intergenic not near genes chr2L_7_20020001 chr2L_20020001 RAL-639 353 chr2L 20088677 20088702 chr2L 20092270 20092294 6 3593 36.0 29.5 32.8 0.2 3617 chr2L 20088677 exon neb + chr2L 20090486 exon CG10747 - chr2L 20092294 exon CG10721 + chr2L_6_20090001 chr2L_20090001 RAL-639 354 chr2L 20121980 20121992 chr2L 20123427 20123440 5 1448 5.5 4.5 5.0 0.8 1460 chr2L 20121980 intergenic not near genes chr2L 20122710 intergenic not near genes chr2L 20123440 intergenic not near genes chr2L_5_20120001 chr2L_20120001 RAL-639 355 chr2L 20127482 20127518 chr2L 20127709 20127745 6 227 2.5 1.0 1.8 2.1 263 chr2L 20127482 intergenic not near genes chr2L 20127614 intergenic not near genes chr2L 20127745 intergenic not near genes chr2L_6_20125001 chr2L_20125001 RAL-639 356 chr2L 20141317 20141337 chr2L 20141418 20141438 7 101 6.0 1.5 3.8 1.5 121 chr2L 20141317 intergenic not near genes chr2L 20141378 intergenic not near genes chr2L 20141438 intergenic not near genes chr2L_7_20140001 chr2L_20140001 RAL-639 357 chr2L 20299332 20299365 chr2L 20299445 20299477 10 110 2.0 3.0 2.5 2.9 145 chr2L 20299332 intergenic not near genes chr2L 20299404 intergenic not near genes chr2L 20299477 intergenic not near genes chr2L_10_20295001 chr2L_20295001 RAL-639 358 chr2L 20303168 20303183 chr2L 20310636 20310651 blood 4 7468 0.0 1.5 0.8 2.2 7483 chr2L 20303168 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310651 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-639 359 chr2L 20335545 20335579 chr2L 20335860 20335893 6 312 2.5 3.0 2.8 1.6 348 chr2L 20335545 intron spir + chr2L 20335719 intron spir + chr2L 20335893 intron spir + chr2L_6_20335001 chr2L_20335001 RAL-639 360 chr2L 20340107 20340139 chr2L 20340221 20340257 9 115 16.5 18.0 17.2 0.5 150 chr2L 20340107 exon spir + chr2L 20340182 intron spir + chr2L 20340257 intron spir + chr2L_9_20340001 chr2L_20340001 RAL-639 361 chr2L 20380248 20380282 chr2L 20380335 20380369 15 86 0.5 2.5 1.5 6.0 121 chr2L 20380248 intron CG16798 - chr2L 20380308 intron CG16798 - chr2L 20380369 intron CG16798 - chr2L_15_20380001 chr2L_20380001 RAL-639 362 chr2L 20568664 20568686 chr2L 20569054 20569073 X-element 4 389 1.5 2.0 1.8 1.4 409 chr2L 20568664 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569073 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-639 363 chr2L 20576227 20576249 chr2L 20583694 20583716 blood 9 7467 2.0 6.0 4.0 1.8 7489 chr2L 20576227 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-639 364 chr2L 20611252 20611265 chr2L 20611325 20611354 4 80 0.0 1.5 0.8 2.2 102 chr2L 20611252 intron CR44909 - chr2L 20611303 intron CR44909 - chr2L 20611354 intron CR44909 - chr2L_4_20610001 chr2L_20610001 RAL-639 365 chr2L 20818250 20818280 chr2L 20818677 20818707 11 427 4.5 2.5 3.5 2.4 457 chr2L 20818250 intron CheB38a - chr2L 20818478 exon CheB38a - chr2L 20818707 intergenic CheB38a - chr2L_11_20815001 chr2L_20815001 RAL-639 366 chr2L 20819135 20819143 chr2L 20819219 20819226 5 83 2.0 5.5 3.8 1.0 91 chr2L 20819135 intergenic not near genes chr2L 20819180 intergenic not near genes chr2L 20819226 intergenic not near genes chr2L_5_20815001 chr2L_20815001 RAL-639 367 chr2L 20835812 20835833 chr2L 20836529 20836550 Quasimodo 4 717 2.0 2.0 2.0 1.3 738 chr2L 20835812 5` UTR Oseg5 - chr2L 20836181 intergenic Oseg5 -,Spn38F - chr2L 20836550 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-639 368 chr2L 20840041 20840056 chr2L 20840240 20840264 6 209 3.0 3.0 3.0 1.5 223 chr2L 20840041 intergenic not near genes chr2L 20840152 intergenic not near genes chr2L 20840264 intergenic CG31676 + chr2L_6_20840001 chr2L_20840001 RAL-639 369 chr2L 20961041 20961076 chr2L 20961120 20961155 15 77 2.5 6.5 4.5 2.7 114 chr2L 20961041 intergenic not near genes chr2L 20961098 intergenic not near genes chr2L 20961155 intergenic not near genes chr2L_15_20960001 chr2L_20960001 RAL-639 370 chr2L 20968309 20968340 chr2L 20968470 20968501 11 161 1.0 2.0 1.5 4.4 192 chr2L 20968309 intron CG42238 - chr2L 20968405 intron CG42238 - chr2L 20968501 intron CG42238 - chr2L_11_20965001 chr2L_20965001 RAL-639 371 chr2L 20976653 20976668 chr2L 20981468 20981483 X-element 5 4814 2.5 3.0 2.8 1.3 4830 chr2L 20976653 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-639 372 chr2L 21019339 21019358 chr2L 21019459 21019479 6 121 2.0 2.5 2.2 1.9 140 chr2L 21019339 intron CG42238 - chr2L 21019409 intron CG42238 - chr2L 21019479 intron CG42238 - chr2L_6_21015001 chr2L_21015001 RAL-639 373 chr2L 21020272 21020310 chr2L 21023949 21023987 NOF 12 3677 2.0 1.0 1.5 4.8 3715 chr2L 21020272 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-639 374 chr2L 21035394 21035429 chr2L 21035503 21035538 12 108 1.5 6.0 3.8 2.5 144 chr2L 21035394 intron CG42238 - chr2L 21035466 intron CG42238 - chr2L 21035538 intron CG42238 - chr2L_12_21035001 chr2L_21035001 RAL-639 375 chr2L 21041137 21041167 chr2L 21049398 21049428 Tirant 13 8260 2.5 1.5 2.0 4.3 8291 chr2L 21041137 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_13_21045001 chr2L_21045001 RAL-639 376 chr2L 21074918 21074946 chr2L 21075009 21075032 5 90 0.5 1.0 0.8 2.8 114 chr2L 21074918 intergenic tadr + chr2L 21074975 intergenic tadr + chr2L 21075032 intergenic tadr + chr2L_5_21070001 chr2L_21070001 RAL-639 377 chr2L 21088926 21088939 chr2L 21089009 21089021 5 82 2.5 4.0 3.2 1.2 95 chr2L 21088926 intergenic ppk13 -,CG9259 + chr2L 21088974 intergenic ppk13 -,CG9259 + chr2L 21089021 intergenic ppk13 -,CG9259 + chr2L_5_21085001 chr2L_21085001 RAL-639 378 chr2L 21113687 21113717 chr2L 21113778 21113810 5 91 2.5 2.5 2.5 1.4 123 chr2L 21113687 intron Nhe2 + chr2L 21113748 intron Nhe2 + chr2L 21113810 intron Nhe2 + chr2L_5_21110001 chr2L_21110001 RAL-639 379 chr2L 21151729 21151761 chr2L 21151805 21151837 5 76 0.5 2.5 1.5 2.0 108 chr2L 21151729 intergenic not near genes chr2L 21151783 intergenic not near genes chr2L 21151837 intergenic not near genes chr2L_5_21150001 chr2L_21150001 RAL-639 380 chr2L 21169841 21169876 chr2L 21169923 21169958 9 82 1.0 2.0 1.5 3.6 117 chr2L 21169841 intron Acon + chr2L 21169900 intron Acon + chr2L 21169958 intron Acon + chr2L_9_21165001 chr2L_21165001 RAL-639 381 chr2L 21286604 21286630 chr2L 21286682 21286708 10 78 1.5 1.0 1.2 4.5 104 chr2L 21286604 exon Mio - chr2L 21286656 intron Mio - chr2L 21286708 intron Mio - chr2L_10_21285001 chr2L_21285001 RAL-639 382 chr2L 21597030 21597044 chr2L 21604774 21604788 roo 5 7743 3.5 3.0 3.2 1.2 7758 chr2L 21597030 intergenic not near genes chr2L 21600909 intergenic not near genes chr2L 21604788 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-639 383 chr2L 21740083 21740104 chr2L 21740181 21740202 6 98 0.0 0.5 0.2 5.0 119 chr2L 21740083 3` UTR step - chr2L 21740142 3` UTR step - chr2L 21740202 3` UTR step - chr2L_6_21740001 chr2L_21740001 RAL-639 384 chr2L 19024097 19024097 chr2L 21768294 21768294 4 2744197 17.0 10.5 13.8 0.3 2744197 chr2L 19024097 3` UTR CR43700 - chr2L 20396196 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-639 385 chr2L 21819334 21819348 chr2L 21819419 21819434 4 87 7.0 3.0 5.0 0.7 100 chr2L 21819334 intergenic CR44786 + chr2L 21819384 intergenic CR44786 + chr2L 21819434 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-639 386 chr2L 21886625 21886650 chr2L 21886704 21886729 7 79 5.5 3.5 4.5 1.3 104 chr2L 21886625 intergenic not near genes chr2L 21886677 intergenic not near genes chr2L 21886729 intergenic not near genes chr2L_7_21885001 chr2L_21885001 RAL-639 387 chr2L 21934574 21934593 chr2L 21934697 21934716 6 122 1.5 2.5 2.0 2.0 142 chr2L 21934574 intergenic not near genes chr2L 21934645 intergenic not near genes chr2L 21934716 intergenic not near genes chr2L_6_21930001 chr2L_21930001 RAL-639 388 chr2L 21981684 21981716 chr2L 21990849 21990881 roo 11 9164 2.0 4.5 3.2 2.6 9197 chr2L 21981684 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-639 389 chr2L 22001649 22001674 chr2L 22001724 22001750 6 72 1.0 2.0 1.5 2.4 101 chr2L 22001649 intergenic not near genes chr2L 22001700 intergenic not near genes chr2L 22001750 intergenic not near genes chr2L_6_22000001 chr2L_22000001 RAL-639 390 chr2L 22011918 22011949 chr2L 22011999 22012030 11 81 2.0 2.0 2.0 3.7 112 chr2L 22011918 intergenic not near genes chr2L 22011974 intergenic not near genes chr2L 22012030 intergenic not near genes chr2L_11_22010001 chr2L_22010001 RAL-639 391 chr2L 22054871 22054893 chr2L 22055229 22055251 12 358 3.0 0.5 1.8 4.3 380 chr2L 22054871 intergenic not near genes chr2L 22055061 intergenic not near genes chr2L 22055251 intergenic not near genes chr2L_12_22055001 chr2L_22055001 RAL-639 392 chr2L 22077297 22077315 chr2L 22077378 22077396 6 81 1.5 2.0 1.8 2.1 99 chr2L 22077297 intergenic not near genes chr2L 22077346 intergenic not near genes chr2L 22077396 intergenic not near genes chr2L_6_22075001 chr2L_22075001 RAL-639 393 chr2L 22179540 22179570 chr2L 22179617 22179646 10 76 1.0 3.5 2.2 3.1 106 chr2L 22179540 intron CG3635 + chr2L 22179593 intron CG3635 + chr2L 22179646 intron CG3635 + chr2L_10_22175001 chr2L_22175001 RAL-639 394 chr2L 22192023 22192047 chr2L 22192112 22192136 6 89 2.0 3.0 2.5 1.7 113 chr2L 22192023 intron Ir40a - chr2L 22192080 intron Ir40a - chr2L 22192136 intron Ir40a - chr2L_6_22190001 chr2L_22190001 RAL-639 395 chr2L 22239427 22239460 chr2L 22239508 22239541 6 80 2.0 1.5 1.8 2.1 114 chr2L 22239427 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239541 3` UTR CR43765 - chr2L_6_22235001 chr2L_22235001 RAL-639 396 chr2L 22258616 22258648 chr2L 22260740 22260772 G6 7 2121 2.0 3.0 2.5 2.0 2156 chr2L 22258616 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_7_22255001 chr2L_22255001 RAL-639 397 chr2L 22293761 22293788 chr2L 22293843 22293870 7 83 2.5 2.0 2.2 2.2 109 chr2L 22293761 intergenic not near genes chr2L 22293816 intergenic not near genes chr2L 22293870 intergenic not near genes chr2L_7_22290001 chr2L_22290001 RAL-639 398 chr2L 22548923 22548935 chr2L 22550148 22550160 1360 7 1224 0.0 5.5 2.8 1.8 1237 chr2L 22548923 intergenic CG17490 + chr2L 22549542 intergenic not near genes chr2L 22550160 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-639 399 chr2L 22558142 22558167 chr2L 22558218 22558240 6 76 2.5 3.0 2.8 1.6 98 chr2L 22558142 intergenic not near genes chr2L 22558191 intergenic not near genes chr2L 22558240 intergenic not near genes chr2L_6_22555001 chr2L_22555001 RAL-639 400 chr2L 22558387 22558419 chr2L 22558697 22558712 7 307 1.5 0.5 1.0 3.5 325 chr2L 22558387 intergenic not near genes chr2L 22558550 intergenic not near genes chr2L 22558712 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-639 401 chr2L 22983948 22983971 chr2L 22984024 22984047 5 76 1.0 3.0 2.0 1.7 99 chr2L 22983948 intron cta + chr2L 22983998 intron cta + chr2L 22984047 intron cta + chr2L_5_22980001 chr2L_22980001 RAL-639 402 chr2R 529329 529355 chr2R 537951 537980 Max-element 6 8621 0.5 1.5 1.0 3.0 8651 chr2R 529329 intron CG40378 + chr2R 533654 intron CG40378 + chr2R 537980 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-639 403 chr2R 548317 548328 chr2R 548396 548405 4 79 1.5 2.0 1.8 1.4 88 chr2R 548317 intron CG40378 + chr2R 548361 intron CG40378 + chr2R 548405 intron CG40378 + chr2R_4_545001 chr2R_545001 RAL-639 404 chr2R 1082375 1082385 chr2R 1087133 1087133 Doc 5 4762 2.0 3.5 2.8 1.3 4758 chr2R 1082375 intron rl + chr2R 1084754 intron rl + chr2R 1087133 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-639 405 chr2R 1750908 1750917 chr2R 1752148 1752159 INE-1 4 1241 2.5 5.0 3.8 0.8 1251 chr2R 1750908 intron CG41520 + chr2R 1751534 intron CG41520 + chr2R 1752159 intron CG41520 + chr2R_4_1750001 chr2R_1750001 RAL-639 406 chr2R 2015144 2015163 chr2R 2015220 2015240 5 76 1.5 3.5 2.5 1.4 96 chr2R 2015144 intron CG17684 - chr2R 2015192 intron CG17684 - chr2R 2015240 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-639 407 chr2R 2498982 2499001 chr2R 2508129 2508148 roo 6 9147 4.0 2.0 3.0 1.5 9166 chr2R 2498982 intron MFS17 - chr2R 2503565 intron MFS17 - chr2R 2508148 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-639 408 chr2R 3818934 3818943 chr2R 3819048 3819058 8 116 5.0 1.5 3.2 1.9 124 chr2R 3818934 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819058 intergenic not near genes chr2R_8_3815001 chr2R_3815001 RAL-639 409 chr2R 4622961 4622985 chr2R 4624119 4624144 1360 5 1158 1.0 6.0 3.5 1.1 1183 chr2R 4622961 intergenic CR44101 - chr2R 4623552 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-639 410 chr2R 4656784 4656814 chr2R 4656888 4656918 10 101 22.0 20.0 21.0 0.5 134 chr2R 4656784 intergenic not near genes chr2R 4656851 intergenic not near genes chr2R 4656918 intergenic not near genes chr2R_10_4655001 chr2R_4655001 RAL-639 411 chr2R 4940964 4940985 chr2R 4943414 4943426 4 2448 6.5 18.5 12.5 0.3 2462 chr2R 4940964 intron Ir41a + chr2R 4942195 intron Ir41a + chr2R 4943426 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-639 412 chr2R 5009153 5009163 chr2R 5009393 5009399 4 240 3.5 3.5 3.5 0.9 246 chr2R 5009153 intron Ir41a + chr2R 5009276 intron Ir41a + chr2R 5009399 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-639 413 chr2R 5009171 5009174 chr2R 5009382 5009415 4 223 2.0 1.5 1.8 1.4 244 chr2R 5009171 intron Ir41a + chr2R 5009293 intron Ir41a + chr2R 5009415 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-639 414 chr2R 5019279 5019309 chr2R 5019365 5019389 7 85 1.5 2.5 2.0 2.3 110 chr2R 5019279 intron Ir41a + chr2R 5019334 intron Ir41a + chr2R 5019389 intron Ir41a + chr2R_7_5015001 chr2R_5015001 RAL-639 415 chr2R 5043805 5043837 chr2R 5043899 5043930 9 94 3.0 0.5 1.8 3.2 125 chr2R 5043805 intergenic not near genes chr2R 5043868 intergenic not near genes chr2R 5043930 intergenic not near genes chr2R_9_5040001 chr2R_5040001 RAL-639 416 chr2R 5075351 5075363 chr2R 5075766 5075774 7 414 0.0 3.0 1.5 2.8 423 chr2R 5075351 intergenic not near genes chr2R 5075562 intergenic not near genes chr2R 5075774 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-639 417 chr2R 5125254 5125275 chr2R 5125572 5125593 6 317 0.0 2.0 1.0 3.0 339 chr2R 5125254 intron gus - chr2R 5125424 intron gus - chr2R 5125593 intron gus - chr2R_6_5125001 chr2R_5125001 RAL-639 418 chr2R 5175875 5175902 chr2R 5175955 5175982 5 80 2.5 1.5 2.0 1.7 107 chr2R 5175875 intergenic not near genes chr2R 5175928 intergenic not near genes chr2R 5175982 intergenic not near genes chr2R_5_5175001 chr2R_5175001 RAL-639 419 chr2R 5240223 5240231 chr2R 5240299 5240307 4 76 4.5 3.0 3.8 0.8 84 chr2R 5240223 intron Nipped-A - chr2R 5240265 intron Nipped-A - chr2R 5240307 intron Nipped-A - chr2R_4_5240001 chr2R_5240001 RAL-639 420 chr2R 5363498 5363515 chr2R 5363574 5363592 4 77 1.5 4.5 3.0 1.0 94 chr2R 5363498 intron CR42646 + chr2R 5363545 intron CR42646 + chr2R 5363592 intron CR42646 + chr2R_4_5360001 chr2R_5360001 RAL-639 421 chr2R 5396258 5396283 chr2R 5396496 5396521 5 237 2.5 3.0 2.8 1.3 263 chr2R 5396258 intergenic not near genes chr2R 5396390 intergenic not near genes chr2R 5396521 intergenic not near genes chr2R_5_5395001 chr2R_5395001 RAL-639 422 chr2R 5455778 5455805 chr2R 5455856 5455864 6 72 1.0 2.5 1.8 2.1 86 chr2R 5455778 3` UTR laccase2 + chr2R 5455821 3` UTR laccase2 + chr2R 5455864 3` UTR laccase2 + chr2R_6_5455001 chr2R_5455001 RAL-639 423 chr2R 5472367 5472393 chr2R 5472462 5472488 4 95 0.5 2.5 1.5 1.6 121 chr2R 5472367 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-639 424 chr2R 5473366 5473399 chr2R 5473461 5473494 6 95 2.0 2.5 2.2 1.9 128 chr2R 5473366 intron CG30440 - chr2R 5473430 intron CG30440 - chr2R 5473494 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-639 425 chr2R 5475838 5475845 chr2R 5476165 5476172 jockey2 4 327 3.5 2.0 2.8 1.1 334 chr2R 5475838 intron CG30440 - chr2R 5476005 intron CG30440 - chr2R 5476172 intron CG30440 - chr2R_4_5475001 chr2R_5475001 RAL-639 426 chr2R 5509516 5509548 chr2R 5509612 5509644 4 96 2.5 2.0 2.2 1.2 128 chr2R 5509516 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509644 intron CG30438 + chr2R_4_5505001 chr2R_5505001 RAL-639 427 chr2R 5529286 5529300 chr2R 5529394 5529408 INE-1 4 106 4.0 1.5 2.8 1.1 122 chr2R 5529286 intron CG30438 + chr2R 5529347 intron CG30438 + chr2R 5529408 intron CG30438 + chr2R_4_5525001 chr2R_5525001 RAL-639 428 chr2R 5712318 5712343 chr2R 5712395 5712420 7 77 2.5 1.5 2.0 2.3 102 chr2R 5712318 intron ap - chr2R 5712369 intron ap - chr2R 5712420 intron ap - chr2R_7_5710001 chr2R_5710001 RAL-639 429 chr2R 5794230 5794262 chr2R 5794358 5794389 9 125 3.5 3.0 3.2 2.1 159 chr2R 5794230 intergenic not near genes chr2R 5794310 intergenic not near genes chr2R 5794389 intergenic not near genes chr2R_9_5790001 chr2R_5790001 RAL-639 430 chr2R 5861290 5861320 chr2R 5861410 5861441 8 120 0.5 4.0 2.2 2.5 151 chr2R 5861290 intergenic dpr12 + chr2R 5861366 intergenic not near genes chr2R 5861441 intergenic not near genes chr2R_8_5860001 chr2R_5860001 RAL-639 431 chr2R 5869276 5869301 chr2R 5874351 5874377 flea 7 5075 4.0 3.5 3.8 1.5 5101 chr2R 5869276 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874377 intergenic not near genes chr2R_7_5870001 chr2R_5870001 RAL-639 432 chr2R 5878930 5878958 chr2R 5879009 5879037 8 79 0.5 2.5 1.5 3.2 107 chr2R 5878930 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879037 intergenic CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-639 433 chr2R 5902161 5902180 chr2R 5909720 5909739 17.6 6 7559 2.5 2.0 2.2 1.9 7578 chr2R 5902161 intron CG43366 + chr2R 5905950 intron CG43366 + chr2R 5909739 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-639 434 chr2R 6016784 6016810 chr2R 6016868 6016893 9 84 1.5 0.5 1.0 4.5 109 chr2R 6016784 intergenic not near genes chr2R 6016838 intergenic not near genes chr2R 6016893 intergenic not near genes chr2R_9_6015001 chr2R_6015001 RAL-639 435 chr2R 6096721 6096750 chr2R 6101911 6101948 BS 7 5192 3.5 4.0 3.8 1.5 5227 chr2R 6096721 intron EcR - chr2R 6099334 intron EcR - chr2R 6101948 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-639 436 chr2R 6126947 6126961 chr2R 6127055 6127069 5 107 3.5 2.5 3.0 1.2 122 chr2R 6126947 intron EcR - chr2R 6127008 intron EcR - chr2R 6127069 intron EcR - chr2R_5_6125001 chr2R_6125001 RAL-639 437 chr2R 6178678 6178696 chr2R 6178765 6178783 6 87 1.0 2.0 1.5 2.4 105 chr2R 6178678 intergenic not near genes chr2R 6178730 intergenic not near genes chr2R 6178783 intergenic not near genes chr2R_6_6175001 chr2R_6175001 RAL-639 438 chr2R 6194692 6194702 chr2R 6194775 6194783 5 82 3.0 5.5 4.2 1.0 91 chr2R 6194692 intron Ptr - chr2R 6194738 intron Ptr - chr2R 6194783 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-639 439 chr2R 6236212 6236241 chr2R 6236300 6236329 13 87 2.0 0.0 1.0 6.5 117 chr2R 6236212 intron bin3 + chr2R 6236270 intron bin3 + chr2R 6236329 intron bin3 + chr2R_13_6235001 chr2R_6235001 RAL-639 440 chr2R 6493376 6493396 chr2R 6493481 6493502 5 105 15.5 15.5 15.5 0.3 126 chr2R 6493376 intergenic not near genes chr2R 6493439 intergenic not near genes chr2R 6493502 intergenic not near genes chr2R_5_6490001 chr2R_6490001 RAL-639 441 chr2R 6500958 6500989 chr2R 6501052 6501084 8 94 3.0 2.5 2.8 2.1 126 chr2R 6500958 intergenic not near genes chr2R 6501021 intergenic not near genes chr2R 6501084 intergenic not near genes chr2R_8_6500001 chr2R_6500001 RAL-639 442 chr2R 6579774 6579803 chr2R 6584860 6584889 flea 4 5086 2.5 2.5 2.5 1.1 5115 chr2R 6579774 intron jing + chr2R 6582332 intron jing + chr2R 6584889 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-639 443 chr2R 6691126 6691150 chr2R 6691204 6691229 6 79 2.0 2.0 2.0 2.0 103 chr2R 6691126 intron CG9422 + chr2R 6691178 intron CG9422 + chr2R 6691229 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-639 444 chr2R 6696611 6696639 chr2R 6696690 6696692 7 77 6.0 1.5 3.8 1.5 81 chr2R 6696611 5` UTR Mob4 - chr2R 6696652 5` UTR Mob4 - chr2R 6696692 intergenic Mob4 -,Rab2 + chr2R_7_6695001 chr2R_6695001 RAL-639 445 chr2R 6699593 6699619 chr2R 6699678 6699704 4 85 3.0 1.5 2.2 1.2 111 chr2R 6699593 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699704 intergenic Rab2 + chr2R_4_6695001 chr2R_6695001 RAL-639 446 chr2R 6712590 6712600 chr2R 6712687 6712697 4 97 5.5 3.5 4.5 0.7 107 chr2R 6712590 intron,intron CG3409 -,CG45092 - chr2R 6712644 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-639 447 chr2R 6895404 6895431 chr2R 6895482 6895510 8 79 0.5 1.0 0.8 4.4 106 chr2R 6895404 intron CG30158 + chr2R 6895457 intron CG30158 + chr2R 6895510 intron CG30158 + chr2R_8_6895001 chr2R_6895001 RAL-639 448 chr2R 6952170 6952181 chr2R 6959750 6959761 opus 4 7580 1.5 3.5 2.5 1.1 7591 chr2R 6952170 intron,intron mim -,CheB42c - chr2R 6955966 intron,intron mim -,CheB42c - chr2R 6959761 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-639 449 chr2R 6978641 6978670 chr2R 6978824 6978853 14 183 4.5 4.0 4.2 2.7 212 chr2R 6978641 intron vimar - chr2R 6978747 intron vimar - chr2R 6978853 intron vimar - chr2R_14_6975001 chr2R_6975001 RAL-639 450 chr2R 7160570 7160586 chr2R 7160648 7160664 8 77 0.0 4.0 2.0 2.7 94 chr2R 7160570 intron pk + chr2R 7160617 intron pk + chr2R 7160664 intron pk + chr2R_8_7160001 chr2R_7160001 RAL-639 451 chr2R 7196569 7196594 chr2R 7201344 7201369 F-element 8 4775 3.5 1.0 2.2 2.5 4800 chr2R 7196569 intron pk + chr2R 7198969 intron pk + chr2R 7201369 intron pk + chr2R_8_7195001 chr2R_7195001 RAL-639 452 chr2R 7209845 7209868 chr2R 7217593 7217616 roo 7 7748 4.0 6.0 5.0 1.2 7771 chr2R 7209845 intron pk + chr2R 7213730 intron pk + chr2R 7217616 intron pk + chr2R_7_7210001 chr2R_7210001 RAL-639 453 chr2R 7235821 7235837 chr2R 7240913 7240928 jockey 5 5091 5.5 3.5 4.5 0.9 5107 chr2R 7235821 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240928 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-639 454 chr2R 7235841 7235850 chr2R 7240907 7240942 jockey 7 5088 5.0 2.5 3.8 1.5 5101 chr2R 7235841 intergenic not near genes chr2R 7238392 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_7_7235001 chr2R_7235001 RAL-639 455 chr2R 7254807 7254839 chr2R 7254921 7254954 11 114 5.0 5.5 5.2 1.8 147 chr2R 7254807 5` UTR CR45280 + chr2R 7254880 5` UTR CR45280 + chr2R 7254954 5` UTR CR45280 + chr2R_11_7250001 chr2R_7250001 RAL-639 456 chr2R 7310771 7310789 chr2R 7310852 7310862 5 80 3.5 4.5 4.0 1.0 91 chr2R 7310771 intergenic not near genes chr2R 7310816 intergenic not near genes chr2R 7310862 intergenic not near genes chr2R_5_7310001 chr2R_7310001 RAL-639 457 chr2R 7459278 7459296 chr2R 7459366 7459384 8 88 4.0 0.0 2.0 2.7 106 chr2R 7459278 intergenic Inos -,CG11141 - chr2R 7459331 intergenic CG11141 -,Inos - chr2R 7459384 intergenic CG11141 - chr2R_8_7455001 chr2R_7455001 RAL-639 458 chr2R 7608411 7608434 chr2R 7613612 7613637 I-element 8 5203 4.0 0.0 2.0 2.7 5226 chr2R 7608411 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_8_7610001 chr2R_7610001 RAL-639 459 chr2R 7630882 7630905 chr2R 7631323 7631346 7 440 3.5 5.5 4.5 1.3 464 chr2R 7630882 intron CG43340 + chr2R 7631114 intron CG43340 + chr2R 7631346 intron CG43340 + chr2R_7_7630001 chr2R_7630001 RAL-639 460 chr2R 7692011 7692021 chr2R 7692092 7692102 4 81 3.5 0.0 1.8 1.4 91 chr2R 7692011 intron CG1399 - chr2R 7692056 intron CG1399 - chr2R 7692102 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-639 461 chr2R 7815671 7815705 chr2R 7822140 7822174 Burdock 7 6469 2.0 3.5 2.8 1.8 6503 chr2R 7815671 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-639 462 chr2R 7869190 7869220 chr2R 7873976 7874006 Doc 5 4785 1.5 2.5 2.0 1.7 4816 chr2R 7869190 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874006 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-639 463 chr2R 7884205 7884230 chr2R 7884289 7884300 5 80 1.5 3.0 2.2 1.6 95 chr2R 7884205 intron Dgk - chr2R 7884252 intron Dgk - chr2R 7884300 intron Dgk - chr2R_5_7880001 chr2R_7880001 RAL-639 464 chr2R 7897141 7897154 chr2R 7897227 7897242 6 88 0.0 7.5 3.8 1.2 101 chr2R 7897141 intron CG30377 + chr2R 7897192 intron CG30377 + chr2R 7897242 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-639 465 chr2R 7999581 7999591 chr2R 7999663 7999674 4 83 1.0 0.0 0.5 2.7 93 chr2R 7999581 intergenic not near genes chr2R 7999628 intergenic not near genes chr2R 7999674 intergenic not near genes chr2R_4_7995001 chr2R_7995001 RAL-639 466 chr2R 8015658 8015682 chr2R 8017681 8017705 5 2023 1.0 4.0 2.5 1.4 2047 chr2R 8015658 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-639 467 chr2R 8197953 8197957 chr2R 8198275 8198283 4 325 0.5 1.0 0.8 2.2 330 chr2R 8197953 intron LRP1 + chr2R 8198118 intron LRP1 + chr2R 8198283 intron LRP1 + chr2R_4_8195001 chr2R_8195001 RAL-639 468 chr2R 8328704 8328733 chr2R 8328780 8328810 8 76 3.5 1.5 2.5 2.3 106 chr2R 8328704 intron pdm3 + chr2R 8328757 intron pdm3 + chr2R 8328810 intron pdm3 + chr2R_8_8325001 chr2R_8325001 RAL-639 469 chr2R 8330861 8330893 chr2R 8331347 8331379 roo 11 485 1.5 3.0 2.2 3.4 518 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-639 470 chr2R 8379792 8379818 chr2R 8379888 8379914 6 95 3.0 1.0 2.0 2.0 122 chr2R 8379792 intron pdm3 + chr2R 8379853 intron pdm3 + chr2R 8379914 intron pdm3 + chr2R_6_8375001 chr2R_8375001 RAL-639 471 chr2R 8398210 8398244 chr2R 8402990 8403024 Doc 11 4780 1.5 3.5 2.5 3.1 4814 chr2R 8398210 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_11_8400001 chr2R_8400001 RAL-639 472 chr2R 8419769 8419780 chr2R 8419885 8419901 5 119 2.5 2.5 2.5 1.4 132 chr2R 8419769 intergenic not near genes chr2R 8419835 intergenic not near genes chr2R 8419901 intergenic not near genes chr2R_5_8415001 chr2R_8415001 RAL-639 473 chr2R 8427868 8427906 chr2R 8427947 8427985 11 77 4.5 2.0 3.2 2.6 117 chr2R 8427868 intron CSN7 + chr2R 8427926 intron CSN7 + chr2R 8427985 intron CSN7 + chr2R_11_8425001 chr2R_8425001 RAL-639 474 chr2R 8498064 8498092 chr2R 8498584 8498614 6 522 1.5 2.5 2.0 2.0 550 chr2R 8498064 intron mtt - chr2R 8498339 intron mtt - chr2R 8498614 intron mtt - chr2R_6_8495001 chr2R_8495001 RAL-639 475 chr2R 8557459 8557469 chr2R 8557911 8557936 5 464 2.5 2.0 2.2 1.6 477 chr2R 8557459 intergenic not near genes chr2R 8557698 intergenic not near genes chr2R 8557936 intergenic CR45308 - chr2R_5_8555001 chr2R_8555001 RAL-639 476 chr2R 8564268 8564297 chr2R 8565271 8565300 7 1003 13.0 15.5 14.2 0.5 1032 chr2R 8564268 3` UTR Cyp6a14 - chr2R 8564784 intron Cyp6a14 - chr2R 8565300 exon Cyp6a14 - chr2R_7_8560001 chr2R_8560001 RAL-639 477 chr2R 8563669 8563690 chr2R 8565974 8565991 10 2302 22.5 24.0 23.2 0.4 2322 chr2R 8563669 intergenic not near genes chr2R 8564830 exon Cyp6a14 - chr2R 8565991 5` UTR Cyp6a14 - chr2R_10_8560001 chr2R_8560001 RAL-639 478 chr2R 8566031 8566067 chr2R 8566983 8567012 1360 6 947 3.0 0.0 1.5 2.4 981 chr2R 8566031 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567012 5` UTR Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-639 479 chr2R 8588015 8588034 chr2R 8588099 8588118 5 83 3.5 4.5 4.0 1.0 103 chr2R 8588015 intergenic not near genes chr2R 8588066 intergenic not near genes chr2R 8588118 intergenic not near genes chr2R_5_8585001 chr2R_8585001 RAL-639 480 chr2R 8658235 8658268 chr2R 8658309 8658344 8 74 2.0 1.5 1.8 2.9 109 chr2R 8658235 intron ptc + chr2R 8658290 intron ptc + chr2R 8658344 intron ptc + chr2R_8_8655001 chr2R_8655001 RAL-639 481 chr2R 8722769 8722793 chr2R 8723008 8723017 pogo 13 239 3.0 5.0 4.0 2.6 248 chr2R 8722769 intron CG14767 - chr2R 8722893 intron CG14767 - chr2R 8723017 intron CG14767 - chr2R_13_8720001 chr2R_8720001 RAL-639 482 chr2R 9031987 9032012 chr2R 9032065 9032090 5 78 2.0 5.0 3.5 1.1 103 chr2R 9031987 intergenic not near genes chr2R 9032038 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_5_9030001 chr2R_9030001 RAL-639 483 chr2R 9062022 9062047 chr2R 9062200 9062226 6 179 2.5 3.5 3.0 1.5 204 chr2R 9062022 intergenic CG8197 -,ana + chr2R 9062124 intergenic ana +,CG8197 - chr2R 9062226 intergenic ana +,CG8197 - chr2R_6_9060001 chr2R_9060001 RAL-639 484 chr2R 9065913 9065942 chr2R 9065995 9066024 10 82 4.0 3.0 3.5 2.2 111 chr2R 9065913 intron ana + chr2R 9065968 intron ana + chr2R 9066024 intron ana + chr2R_10_9065001 chr2R_9065001 RAL-639 485 chr2R 9075904 9075934 chr2R 9076037 9076069 10 134 3.0 2.0 2.5 2.9 165 chr2R 9075904 exon ana + chr2R 9075986 intron ana + chr2R 9076069 intron ana + chr2R_10_9075001 chr2R_9075001 RAL-639 486 chr2R 9091811 9091833 chr2R 9091916 9091938 9 103 1.5 1.0 1.2 4.1 127 chr2R 9091811 intron CG8080 - chr2R 9091874 intron CG8080 - chr2R 9091938 intron CG8080 - chr2R_9_9090001 chr2R_9090001 RAL-639 487 chr2R 9151303 9151335 chr2R 9157773 9157805 Burdock 5 6470 2.0 2.5 2.2 1.6 6502 chr2R 9151303 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-639 488 chr2R 9212691 9212717 chr2R 9213177 9213179 roo 6 482 3.5 3.0 3.2 1.4 488 chr2R 9212691 intergenic CR45309 + chr2R 9212935 intergenic CR45309 + chr2R 9213179 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-639 489 chr2R 9262777 9262809 chr2R 9262863 9262885 5 79 0.5 2.0 1.2 2.3 108 chr2R 9262777 intron,exon Pkn -,CG34141 - chr2R 9262831 intron,exon Pkn -,CG34141 - chr2R 9262885 intron,5` UTR Pkn -,CG34141 - chr2R_5_9260001 chr2R_9260001 RAL-639 490 chr2R 9264047 9264072 chr2R 9264144 9264169 7 97 2.0 3.5 2.8 1.8 122 chr2R 9264047 intron Pkn - chr2R 9264108 intron Pkn - chr2R 9264169 intron Pkn - chr2R_7_9260001 chr2R_9260001 RAL-639 491 chr2R 9368129 9368150 chr2R 9368205 9368224 7 75 5.0 0.0 2.5 2.0 95 chr2R 9368129 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368224 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-639 492 chr2R 9390890 9390917 chr2R 9390976 9391003 9 86 1.5 1.5 1.5 3.6 113 chr2R 9390890 exon l(2)03659 + chr2R 9390946 intron l(2)03659 + chr2R 9391003 exon l(2)03659 + chr2R_9_9390001 chr2R_9390001 RAL-639 493 chr2R 9510669 9510695 chr2R 9510785 9510811 11 116 0.0 1.5 0.8 6.1 142 chr2R 9510669 intron brp + chr2R 9510740 intron brp + chr2R 9510811 intron brp + chr2R_11_9510001 chr2R_9510001 RAL-639 494 chr2R 9629594 9629619 chr2R 9629769 9629800 5 176 3.0 3.5 3.2 1.2 206 chr2R 9629594 intron Mmp2 - chr2R 9629697 intron Mmp2 - chr2R 9629800 intron Mmp2 - chr2R_5_9625001 chr2R_9625001 RAL-639 495 chr2R 9649729 9649743 chr2R 9649945 9649966 4 220 2.5 6.0 4.2 0.8 237 chr2R 9649729 intron Mmp2 - chr2R 9649848 intron Mmp2 - chr2R 9649966 intron Mmp2 - chr2R_4_9645001 chr2R_9645001 RAL-639 496 chr2R 9669142 9669171 chr2R 9669243 9669272 8 100 3.5 4.0 3.8 1.7 130 chr2R 9669142 intron Mmp2 - chr2R 9669207 intron Mmp2 - chr2R 9669272 intron Mmp2 - chr2R_8_9665001 chr2R_9665001 RAL-639 497 chr2R 9726623 9726640 chr2R 9734174 9734191 17.6 5 7551 4.0 4.0 4.0 1.0 7568 chr2R 9726623 intron sqa - chr2R 9730407 intron sqa - chr2R 9734191 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-639 498 chr2R 9950300 9950322 chr2R 9950374 9950397 4 76 1.0 3.0 2.0 1.3 97 chr2R 9950300 intron Mef2 - chr2R 9950348 intron Mef2 - chr2R 9950397 intron Mef2 - chr2R_4_9950001 chr2R_9950001 RAL-639 499 chr2R 10017647 10017677 chr2R 10017726 10017756 10 78 2.0 0.5 1.2 4.5 109 chr2R 10017647 intron Pka-R2 - chr2R 10017702 intron Pka-R2 - chr2R 10017756 intron Pka-R2 - chr2R_10_10015001 chr2R_10015001 RAL-639 500 chr2R 10089837 10089854 chr2R 10089924 10089941 5 87 2.5 5.5 4.0 1.0 104 chr2R 10089837 intron CG2269 + chr2R 10089889 intron CG2269 + chr2R 10089941 intron CG2269 + chr2R_5_10085001 chr2R_10085001 RAL-639 501 chr2R 10132214 10132221 chr2R 10132294 10132301 4 80 0.0 4.0 2.0 1.3 87 chr2R 10132214 intron gem + chr2R 10132258 intron gem + chr2R 10132301 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-639 502 chr2R 10144262 10144276 chr2R 10147297 10147312 6 3037 12.0 27.0 19.5 0.3 3050 chr2R 10144262 exon CG18011 + chr2R 10145787 exon CG18011 + chr2R 10147312 exon KCNQ - chr2R_6_10145001 chr2R_10145001 RAL-639 503 chr2R 10176884 10176912 chr2R 10186050 10186079 roo 5 9167 0.5 1.5 1.0 2.5 9195 chr2R 10176884 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-639 504 chr2R 10313313 10313351 chr2R 10313401 10313439 10 88 2.0 3.0 2.5 2.9 126 chr2R 10313313 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_10_10310001 chr2R_10310001 RAL-639 505 chr2R 10352672 10352702 chr2R 10352749 10352779 8 77 1.5 1.0 1.2 3.6 107 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-639 506 chr2R 10454097 10454126 chr2R 10454174 10454203 10 77 4.0 3.5 3.8 2.1 106 chr2R 10454097 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454203 intron,intron Galphao +,Cyp49a1 - chr2R_10_10450001 chr2R_10450001 RAL-639 507 chr2R 10469021 10469055 chr2R 10469147 10469181 14 125 1.0 4.0 2.5 4.0 160 chr2R 10469021 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_14_10465001 chr2R_10465001 RAL-639 508 chr2R 10585578 10585589 chr2R 10594156 10594171 Tirant 4 8582 2.5 4.5 3.5 0.9 8593 chr2R 10585578 intron psq + chr2R 10589874 intron psq + chr2R 10594171 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-639 509 chr2R 10644059 10644086 chr2R 10644137 10644164 6 76 1.0 0.0 0.5 4.0 105 chr2R 10644059 intron Git - chr2R 10644112 intron Git - chr2R 10644164 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-639 510 chr2R 10761559 10761590 chr2R 10761713 10761744 5 154 2.5 1.5 2.0 1.7 185 chr2R 10761559 intron,5` UTR CG33144 -,CR43605 + chr2R 10761652 intron,5` UTR CG33144 -,CR43605 + chr2R 10761744 intron CG33144 - chr2R_5_10760001 chr2R_10760001 RAL-639 511 chr2R 10790149 10790177 chr2R 10790237 10790265 9 88 2.5 4.5 3.5 2.0 116 chr2R 10790149 intron CG33144 - chr2R 10790207 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_9_10790001 chr2R_10790001 RAL-639 512 chr2R 10827335 10827358 chr2R 10827422 10827446 7 86 1.5 3.0 2.2 2.2 111 chr2R 10827335 exon CG12325 + chr2R 10827390 3` UTR CG12325 + chr2R 10827446 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_7_10825001 chr2R_10825001 RAL-639 513 chr2R 10948025 10948060 chr2R 10955575 10955611 17.6 10 7550 2.0 2.5 2.2 3.1 7586 chr2R 10948025 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955611 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-639 514 chr2R 11009829 11009848 chr2R 11018997 11019022 roo 6 9172 2.5 1.0 1.8 2.1 9193 chr2R 11009829 intron luna - chr2R 11014426 intron luna - chr2R 11019022 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-639 515 chr2R 11102866 11102890 chr2R 11102948 11102972 9 81 2.0 0.0 1.0 4.5 106 chr2R 11102866 intron luna - chr2R 11102919 intron luna - chr2R 11102972 intron luna - chr2R_9_11100001 chr2R_11100001 RAL-639 516 chr2R 11179270 11179297 chr2R 11179356 11179361 9 82 1.5 6.0 3.8 1.9 91 chr2R 11179270 intron shn + chr2R 11179316 intron shn + chr2R 11179361 intron shn + chr2R_9_11175001 chr2R_11175001 RAL-639 517 chr2R 11202120 11202153 chr2R 11202214 11202247 9 94 2.0 2.0 2.0 3.0 127 chr2R 11202120 intron shn + chr2R 11202184 intron shn + chr2R 11202247 intron shn + chr2R_9_11200001 chr2R_11200001 RAL-639 518 chr2R 11207840 11207845 chr2R 11208005 11208038 BS 4 183 5.0 2.0 3.5 0.9 198 chr2R 11207840 intron shn + chr2R 11207939 intron shn + chr2R 11208038 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-639 519 chr2R 11265725 11265745 chr2R 11265806 11265819 4 79 2.5 0.0 1.2 1.8 94 chr2R 11265725 exon Cpr47Ee + chr2R 11265772 intron Cpr47Ee + chr2R 11265819 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-639 520 chr2R 11292974 11292992 chr2R 11293053 11293069 8 78 4.0 0.0 2.0 2.7 95 chr2R 11292974 exon,3` UTR dare -,CG30033 + chr2R 11293022 5` UTR,3` UTR dare -,CG30033 + chr2R 11293069 5` UTR,3` UTR dare -,CG30033 + chr2R_8_11290001 chr2R_11290001 RAL-639 521 chr2R 11297617 11297650 chr2R 11301937 11301971 flea 11 4320 1.5 2.0 1.8 3.9 4354 chr2R 11297617 intergenic CG42336 - chr2R 11299794 intergenic not near genes chr2R 11301971 5` UTR CG7741 + chr2R_11_11295001 chr2R_11295001 RAL-639 522 chr2R 11439194 11439222 chr2R 11439270 11439298 7 74 0.5 3.5 2.0 2.3 104 chr2R 11439194 intron CG7777 + chr2R 11439246 intron CG7777 + chr2R 11439298 intron CG7777 + chr2R_7_11435001 chr2R_11435001 RAL-639 523 chr2R 11472652 11472678 chr2R 11473848 11473875 pogo 11 1197 3.5 1.5 2.5 3.1 1223 chr2R 11472652 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_11_11470001 chr2R_11470001 RAL-639 524 chr2R 11672682 11672718 chr2R 11676124 11676168 7 3450 12.5 8.0 10.2 0.6 3486 chr2R 11672682 intron,intron Roc2 -,Tret1-1 + chr2R 11674425 intron,exon Roc2 -,Tret1-1 + chr2R 11676168 intron,intron Roc2 -,Tret1-2 + chr2R_7_11670001 chr2R_11670001 RAL-639 525 chr2R 11724175 11724188 chr2R 11724258 11724271 6 83 1.0 2.5 1.8 2.1 96 chr2R 11724175 intron pyr + chr2R 11724223 intron pyr + chr2R 11724271 intron pyr + chr2R_6_11720001 chr2R_11720001 RAL-639 526 chr2R 11728271 11728298 chr2R 11728347 11728372 6 75 1.0 2.5 1.8 2.1 101 chr2R 11728271 intergenic not near genes chr2R 11728322 intergenic not near genes chr2R 11728372 intergenic not near genes chr2R_6_11725001 chr2R_11725001 RAL-639 527 chr2R 11765688 11765709 chr2R 11765756 11765782 5 74 3.5 2.0 2.8 1.3 94 chr2R 11765688 intron ths + chr2R 11765735 intron ths + chr2R 11765782 intron ths + chr2R_5_11765001 chr2R_11765001 RAL-639 528 chr2R 11925309 11925337 chr2R 11926827 11926854 10 1515 16.0 12.0 14.0 0.7 1545 chr2R 11925309 intergenic not near genes chr2R 11926082 intergenic not near genes chr2R 11926854 intergenic not near genes chr2R_10_11925001 chr2R_11925001 RAL-639 529 chr2R 12061058 12061069 chr2R 12061139 12061150 4 81 2.5 0.0 1.2 1.8 92 chr2R 12061058 intron Drep-3 + chr2R 12061104 intron Drep-3 + chr2R 12061150 intron Drep-3 + chr2R_4_12060001 chr2R_12060001 RAL-639 530 chr2R 12093954 12093973 chr2R 12094067 12094085 5 111 2.5 2.0 2.2 1.6 131 chr2R 12093954 intron jeb - chr2R 12094020 intron jeb - chr2R 12094085 intron jeb - chr2R_5_12090001 chr2R_12090001 RAL-639 531 chr2R 12146486 12146503 chr2R 12147608 12147625 6 1120 18.0 29.5 23.8 0.2 1139 chr2R 12146486 intron,3` UTR Hen1 +,CG8878 - chr2R 12147056 intron,exon Hen1 +,CG8878 - chr2R 12147625 intron,exon Hen1 +,CG8878 - chr2R_6_12145001 chr2R_12145001 RAL-639 532 chr2R 12145912 12145935 chr2R 12148605 12148630 6 2694 27.5 41.5 34.5 0.2 2718 chr2R 12145912 exon Hen1 + chr2R 12147271 intron,intron Hen1 +,CG8878 - chr2R 12148630 intron,exon Hen1 +,CG8878 - chr2R_6_12145001 chr2R_12145001 RAL-639 533 chr2R 12186000 12186036 chr2R 12186095 12186131 22 94 3.5 4.0 3.8 4.6 131 chr2R 12186000 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_22_12185001 chr2R_12185001 RAL-639 534 chr2R 12187471 12187507 chr2R 12190087 12190123 57 2619 178.5 110.0 144.2 0.4 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_57_12185001 chr2R_12185001 RAL-639 535 chr2R 12217578 12217598 chr2R 12217659 12217679 8 81 3.0 2.0 2.5 2.3 101 chr2R 12217578 intergenic not near genes chr2R 12217628 intergenic not near genes chr2R 12217679 intergenic not near genes chr2R_8_12215001 chr2R_12215001 RAL-639 536 chr2R 12481140 12481164 chr2R 12482938 12482967 roo 6 1803 4.0 4.5 4.2 1.2 1827 chr2R 12481140 exon Dh44-R2 + chr2R 12482054 intron Dh44-R2 + chr2R 12482967 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-639 537 chr2R 12501696 12501725 chr2R 12503858 12503887 Rt1c 9 2162 1.0 5.5 3.2 2.1 2191 chr2R 12501696 intron fdl - chr2R 12502792 intron fdl - chr2R 12503887 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-639 538 chr2R 12555440 12555472 chr2R 12556145 12556173 10 703 6.0 1.5 3.8 2.1 733 chr2R 12555440 intron fra + chr2R 12555806 intron fra + chr2R 12556173 intron fra + chr2R_10_12555001 chr2R_12555001 RAL-639 539 chr2R 12565585 12565588 chr2R 12565968 12565971 4 383 0.5 3.5 2.0 1.3 386 chr2R 12565585 intergenic not near genes chr2R 12565778 intergenic Cyp301a1 + chr2R 12565971 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-639 540 chr2R 12610723 12610747 chr2R 12610818 12610840 8 94 2.5 4.0 3.2 1.9 117 chr2R 12610723 intron Amph + chr2R 12610782 intron Amph + chr2R 12610840 intron Amph + chr2R_8_12610001 chr2R_12610001 RAL-639 541 chr2R 12707520 12707541 chr2R 12715885 12715907 roo 5 8366 0.0 1.0 0.5 3.3 8387 chr2R 12707520 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715907 intron CG42663 + chr2R_5_12710001 chr2R_12710001 RAL-639 542 chr2R 12726327 12726350 chr2R 12726419 12726442 6 92 1.5 2.5 2.0 2.0 115 chr2R 12726327 intron CG42663 + chr2R 12726384 intron CG42663 + chr2R 12726442 intron CG42663 + chr2R_6_12725001 chr2R_12725001 RAL-639 543 chr2R 12771323 12771356 chr2R 12771432 12771465 6 109 1.0 2.0 1.5 2.4 142 chr2R 12771323 intergenic not near genes chr2R 12771394 intergenic not near genes chr2R 12771465 intergenic not near genes chr2R_6_12770001 chr2R_12770001 RAL-639 544 chr2R 12789296 12789321 chr2R 12797658 12797682 roo 10 8359 0.0 2.5 1.2 4.5 8386 chr2R 12789296 intron,3` UTR sca +,CR45137 - chr2R 12793489 intron,intron sca +,CR45137 - chr2R 12797682 intron,3` UTR sca +,CR45137 - chr2R_10_12790001 chr2R_12790001 RAL-639 545 chr2R 12819455 12819477 chr2R 12824523 12824546 jockey 4 5068 2.0 2.5 2.2 1.2 5091 chr2R 12819455 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-639 546 chr2R 12855599 12855627 chr2R 12855678 12855702 13 77 5.0 1.0 3.0 3.2 103 chr2R 12855599 intron CG17574 - chr2R 12855650 intron CG17574 - chr2R 12855702 intron CG17574 - chr2R_13_12855001 chr2R_12855001 RAL-639 547 chr2R 12871244 12871266 chr2R 12871319 12871342 7 76 4.5 2.5 3.5 1.6 98 chr2R 12871244 3` UTR bic + chr2R 12871293 3` UTR bic + chr2R 12871342 3` UTR bic + chr2R_7_12870001 chr2R_12870001 RAL-639 548 chr2R 12879234 12879262 chr2R 12879313 12879341 10 79 4.5 4.0 4.2 1.9 107 chr2R 12879234 intron,intron Aats-asp +,Nmda1 - chr2R 12879288 intron,intron Aats-asp +,Nmda1 - chr2R 12879341 intron,intron Aats-asp +,Nmda1 - chr2R_10_12875001 chr2R_12875001 RAL-639 549 chr2R 12993351 12993371 chr2R 12993455 12993476 5 105 4.0 1.5 2.8 1.3 125 chr2R 12993351 intergenic not near genes chr2R 12993414 intergenic CG33798 + chr2R 12993476 intergenic CG33798 + chr2R_5_12990001 chr2R_12990001 RAL-639 550 chr2R 13034677 13034694 chr2R 13034786 13034803 4 109 0.0 0.5 0.2 3.3 126 chr2R 13034677 intergenic not near genes chr2R 13034740 intergenic not near genes chr2R 13034803 intergenic not near genes chr2R_4_13030001 chr2R_13030001 RAL-639 551 chr2R 13136849 13136864 chr2R 13141643 13141662 Doc 8 4797 2.5 4.5 3.5 1.8 4813 chr2R 13136849 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-639 552 chr2R 13305500 13305509 chr2R 13305582 13305591 5 82 3.5 7.0 5.2 0.8 91 chr2R 13305500 intergenic not near genes chr2R 13305546 intergenic not near genes chr2R 13305591 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-639 553 chr2R 13321928 13321954 chr2R 13322032 13322060 4 106 3.0 0.5 1.8 1.4 132 chr2R 13321928 intergenic not near genes chr2R 13321994 intergenic not near genes chr2R 13322060 intergenic not near genes chr2R_4_13320001 chr2R_13320001 RAL-639 554 chr2R 13372666 13372672 chr2R 13372747 13372748 4 79 1.5 0.5 1.0 2.0 82 chr2R 13372666 intergenic not near genes chr2R 13372707 intergenic not near genes chr2R 13372748 intergenic not near genes chr2R_4_13370001 chr2R_13370001 RAL-639 555 chr2R 13403921 13403939 chr2R 13404006 13404024 5 84 1.0 1.5 1.2 2.3 103 chr2R 13403921 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404024 intergenic not near genes chr2R_5_13400001 chr2R_13400001 RAL-639 556 chr2R 13431502 13431514 chr2R 13431581 13431593 6 79 2.0 2.5 2.2 1.9 91 chr2R 13431502 intron CG42321 - chr2R 13431548 intron CG42321 - chr2R 13431593 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-639 557 chr2R 13438860 13438893 chr2R 13440178 13440211 6 1320 3.5 29.5 16.5 0.3 1351 chr2R 13438860 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_6_13435001 chr2R_13435001 RAL-639 558 chr2R 13464477 13464500 chr2R 13464608 13464631 5 131 4.0 4.0 4.0 1.0 154 chr2R 13464477 intron arr - chr2R 13464554 intron arr - chr2R 13464631 intron arr - chr2R_5_13460001 chr2R_13460001 RAL-639 559 chr2R 13532517 13532542 chr2R 13532633 13532658 5 116 2.0 1.0 1.5 2.0 141 chr2R 13532517 intron Vmat - chr2R 13532588 intron Vmat - chr2R 13532658 intron Vmat - chr2R_5_13530001 chr2R_13530001 RAL-639 560 chr2R 13554751 13554773 chr2R 13554836 13554858 7 85 0.0 1.5 0.8 3.9 107 chr2R 13554751 intron Roe1 + chr2R 13554804 intron Roe1 + chr2R 13554858 intron Roe1 + chr2R_7_13550001 chr2R_13550001 RAL-639 561 chr2R 13566261 13566281 chr2R 13566341 13566361 5 80 0.5 0.5 0.5 3.3 100 chr2R 13566261 intergenic not near genes chr2R 13566311 intergenic not near genes chr2R 13566361 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-639 562 chr2R 13580505 13580531 chr2R 13580855 13580880 jockey 11 349 0.5 5.0 2.8 2.9 375 chr2R 13580505 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580880 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-639 563 chr2R 13694628 13694661 chr2R 13694705 13694736 4 76 3.0 1.5 2.2 1.2 108 chr2R 13694628 intron fas + chr2R 13694682 intron fas + chr2R 13694736 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-639 564 chr2R 13721448 13721466 chr2R 13721637 13721655 5 189 3.5 4.5 4.0 1.0 207 chr2R 13721448 intron fas + chr2R 13721552 intron fas + chr2R 13721655 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-639 565 chr2R 13768981 13769002 chr2R 13769078 13769101 7 98 4.0 2.5 3.2 1.7 120 chr2R 13768981 intergenic not near genes chr2R 13769041 intergenic not near genes chr2R 13769101 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-639 566 chr2R 13771414 13771446 chr2R 13771490 13771522 9 75 0.5 1.0 0.8 5.0 108 chr2R 13771414 intron Cpr50Ca + chr2R 13771468 intron Cpr50Ca + chr2R 13771522 intron Cpr50Ca + chr2R_9_13770001 chr2R_13770001 RAL-639 567 chr2R 13888764 13888789 chr2R 13888841 13888866 9 76 3.0 0.0 1.5 3.6 102 chr2R 13888764 intron shot - chr2R 13888815 intron shot - chr2R 13888866 intron shot - chr2R_9_13885001 chr2R_13885001 RAL-639 568 chr2R 13905602 13905619 chr2R 13907584 13907601 Rt1a 8 1981 6.5 3.5 5.0 1.3 1999 chr2R 13905602 intron shot - chr2R 13906602 intron shot - chr2R 13907601 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-639 569 chr2R 14018158 14018183 chr2R 14018242 14018264 8 83 1.5 3.0 2.2 2.5 106 chr2R 14018158 intron mam + chr2R 14018211 intron mam + chr2R 14018264 intron mam + chr2R_8_14015001 chr2R_14015001 RAL-639 570 chr2R 14086652 14086667 chr2R 14086722 14086746 4 76 0.0 3.5 1.8 1.4 94 chr2R 14086652 intron Prosap - chr2R 14086699 intron Prosap - chr2R 14086746 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-639 571 chr2R 14266764 14266788 chr2R 14266839 14266864 8 75 2.5 1.5 2.0 2.7 100 chr2R 14266764 intron CG8547 - chr2R 14266814 intron CG8547 - chr2R 14266864 intron CG8547 - chr2R_8_14265001 chr2R_14265001 RAL-639 572 chr2R 14393867 14393899 chr2R 14393949 14393983 5 82 2.5 1.0 1.8 1.8 116 chr2R 14393867 intergenic not near genes chr2R 14393925 intergenic not near genes chr2R 14393983 intergenic not near genes chr2R_5_14390001 chr2R_14390001 RAL-639 573 chr2R 14394226 14394248 chr2R 14399015 14399036 Doc 8 4789 2.5 3.0 2.8 2.1 4810 chr2R 14394226 intergenic not near genes chr2R 14396631 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_8_14395001 chr2R_14395001 RAL-639 574 chr2R 14400539 14400545 chr2R 14400601 14400624 4 75 3.5 3.0 3.2 1.0 85 chr2R 14400539 intergenic not near genes chr2R 14400582 intergenic not near genes chr2R 14400624 intergenic not near genes chr2R_4_14400001 chr2R_14400001 RAL-639 575 chr2R 14467309 14467326 chr2R 14476467 14476484 roo 8 9158 0.5 0.5 0.5 5.3 9175 chr2R 14467309 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476484 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-639 576 chr2R 14530742 14530768 chr2R 14530824 14530850 4 82 6.0 0.5 3.2 1.0 108 chr2R 14530742 intron ttv + chr2R 14530796 intron ttv + chr2R 14530850 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-639 577 chr2R 14565559 14565585 chr2R 14565635 14565662 8 76 2.5 1.5 2.0 2.7 103 chr2R 14565559 intron ttv + chr2R 14565610 intron ttv + chr2R 14565662 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-639 578 chr2R 14623880 14623899 chr2R 14623969 14623995 6 95 0.0 0.0 0.0 6.0 115 chr2R 14623880 intron Uhg5 + chr2R 14623938 5` UTR Uhg5 + chr2R 14623995 intron Uhg5 + chr2R_6_14620001 chr2R_14620001 RAL-639 579 chr2R 14681632 14681652 chr2R 14681713 14681733 4 82 0.0 2.5 1.2 1.8 101 chr2R 14681632 intron mspo - chr2R 14681682 intron mspo - chr2R 14681733 intron mspo - chr2R_4_14680001 chr2R_14680001 RAL-639 580 chr2R 14850057 14850088 chr2R 14850163 14850194 9 106 22.5 20.0 21.2 0.4 137 chr2R 14850057 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_9_14850001 chr2R_14850001 RAL-639 581 chr2R 14889207 14889227 chr2R 14897815 14897835 Max-element 7 8608 4.0 1.0 2.5 2.0 8628 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893521 intergenic not near genes chr2R 14897835 intergenic not near genes chr2R_7_14890001 chr2R_14890001 RAL-639 582 chr2R 14922145 14922173 chr2R 14922221 14922248 8 76 1.0 3.0 2.0 2.7 103 chr2R 14922145 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922248 intron CG10249 - chr2R_8_14920001 chr2R_14920001 RAL-639 583 chr2R 14968062 14968083 chr2R 14968141 14968162 5 79 2.0 0.5 1.2 2.3 100 chr2R 14968062 intron ckn + chr2R 14968112 intron ckn + chr2R 14968162 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-639 584 chr2R 15004723 15004749 chr2R 15005052 15005076 jockey 5 328 3.0 0.5 1.8 1.8 353 chr2R 15004723 intergenic not near genes chr2R 15004900 intergenic not near genes chr2R 15005076 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-639 585 chr2R 15008962 15008982 chr2R 15009340 15009359 6 376 1.0 2.5 1.8 2.1 397 chr2R 15008962 intergenic not near genes chr2R 15009160 intergenic not near genes chr2R 15009359 intergenic not near genes chr2R_6_15005001 chr2R_15005001 RAL-639 586 chr2R 15015468 15015488 chr2R 15022882 15022912 mdg1 9 7423 2.5 0.5 1.5 3.6 7444 chr2R 15015468 intron hbs + chr2R 15019190 intron hbs + chr2R 15022912 intron hbs + chr2R_9_15015001 chr2R_15015001 RAL-639 587 chr2R 15051082 15051107 chr2R 15051164 15051189 8 81 5.5 5.5 5.5 1.2 107 chr2R 15051082 intergenic not near genes chr2R 15051136 intergenic not near genes chr2R 15051189 intergenic not near genes chr2R_8_15050001 chr2R_15050001 RAL-639 588 chr2R 15084983 15085009 chr2R 15092031 15092058 297 14 7048 1.5 1.5 1.5 5.6 7075 chr2R 15084983 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092058 5` UTR CR44457 + chr2R_14_15085001 chr2R_15085001 RAL-639 589 chr2R 15094882 15094914 chr2R 15094959 15094991 7 77 2.0 2.0 2.0 2.3 109 chr2R 15094882 intergenic not near genes chr2R 15094936 intergenic not near genes chr2R 15094991 intergenic not near genes chr2R_7_15090001 chr2R_15090001 RAL-639 590 chr2R 15119316 15119350 chr2R 15127797 15127830 Tirant 7 8480 1.0 2.5 1.8 2.5 8514 chr2R 15119316 intron chn + chr2R 15123573 intron chn + chr2R 15127830 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-639 591 chr2R 15133482 15133507 chr2R 15133561 15133586 6 77 4.5 2.0 3.2 1.4 104 chr2R 15133482 intron chn + chr2R 15133534 intron chn + chr2R 15133586 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-639 592 chr2R 15296166 15296172 chr2R 15296248 15296255 4 82 1.5 3.0 2.2 1.2 89 chr2R 15296166 intron Trpm - chr2R 15296210 intron Trpm - chr2R 15296255 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-639 593 chr2R 15472030 15472063 chr2R 15472114 15472147 4 84 0.0 0.0 0.0 4.0 117 chr2R 15472030 intergenic CG8180 -,CG43729 + chr2R 15472088 intergenic CG8180 -,CG43729 + chr2R 15472147 intergenic CG8180 -,CG43729 + chr2R_4_15470001 chr2R_15470001 RAL-639 594 chr2R 15580719 15580748 chr2R 15580797 15580809 10 76 2.0 2.0 2.0 3.3 90 chr2R 15580719 intergenic not near genes chr2R 15580764 intergenic not near genes chr2R 15580809 intergenic not near genes chr2R_10_15580001 chr2R_15580001 RAL-639 595 chr2R 15697894 15697926 chr2R 15697975 15698006 17 81 2.0 0.0 1.0 8.5 112 chr2R 15697894 exon CG33462 + chr2R 15697950 3` UTR CG33462 + chr2R 15698006 3` UTR CG33462 + chr2R_17_15695001 chr2R_15695001 RAL-639 596 chr2R 15700240 15700272 chr2R 15700355 15700384 10 114 0.0 2.0 1.0 5.0 144 chr2R 15700240 intron,5` UTR CG30080 -,CG42662 - chr2R 15700312 intron,5` UTR CG30080 -,CG42662 - chr2R 15700384 intron,5` UTR CG30080 -,CG42662 - chr2R_10_15700001 chr2R_15700001 RAL-639 597 chr2R 15747039 15747070 chr2R 15747122 15747151 6 82 3.5 5.0 4.2 1.2 112 chr2R 15747039 intron CG30089 + chr2R 15747095 intron CG30089 + chr2R 15747151 intron CG30089 + chr2R_6_15745001 chr2R_15745001 RAL-639 598 chr2R 15904415 15904445 chr2R 15904493 15904520 9 77 2.5 6.0 4.2 1.7 105 chr2R 15904415 intron sli - chr2R 15904468 intron sli - chr2R 15904520 intron sli - chr2R_9_15900001 chr2R_15900001 RAL-639 599 chr2R 16245420 16245431 chr2R 16245514 16245525 6 94 0.0 2.0 1.0 3.0 105 chr2R 16245420 intron CngA - chr2R 16245472 intron CngA - chr2R 16245525 intron CngA - chr2R_6_16245001 chr2R_16245001 RAL-639 600 chr2R 16539641 16539667 chr2R 16544848 16544876 copia 6 5208 2.5 1.5 2.0 2.0 5235 chr2R 16539641 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544876 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-639 601 chr2R 16547028 16547033 chr2R 16547098 16547113 5 78 0.0 0.0 0.0 5.0 85 chr2R 16547028 intergenic not near genes chr2R 16547070 intergenic not near genes chr2R 16547113 intergenic not near genes chr2R_5_16545001 chr2R_16545001 RAL-639 602 chr2R 16723922 16723947 chr2R 16724002 16724027 4 80 5.0 1.5 3.2 1.0 105 chr2R 16723922 intron CG30463 - chr2R 16723974 intron CG30463 - chr2R 16724027 intron CG30463 - chr2R_4_16720001 chr2R_16720001 RAL-639 603 chr2R 16737136 16737160 chr2R 16737236 16737260 11 99 4.0 3.5 3.8 2.3 124 chr2R 16737136 3` UTR CG43104 - chr2R 16737198 3` UTR CG43104 - chr2R 16737260 exon CG43104 - chr2R_11_16735001 chr2R_16735001 RAL-639 604 chr2R 16775653 16775670 chr2R 16775917 16775934 5 264 2.0 3.0 2.5 1.4 281 chr2R 16775653 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775934 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-639 605 chr2R 16779519 16779533 chr2R 16779683 16779697 8 164 0.0 1.5 0.8 4.4 178 chr2R 16779519 intergenic resilin + chr2R 16779608 intergenic resilin + chr2R 16779697 intergenic resilin + chr2R_8_16775001 chr2R_16775001 RAL-639 606 chr2R 16893782 16893805 chr2R 16893865 16893888 4 83 1.5 5.5 3.5 0.9 106 chr2R 16893782 intron CG8910 - chr2R 16893835 intron CG8910 - chr2R 16893888 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-639 607 chr2R 17236510 17236537 chr2R 17241712 17241741 copia 4 5203 2.5 3.0 2.8 1.1 5231 chr2R 17236510 intron mbl + chr2R 17239126 intron mbl + chr2R 17241741 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-639 608 chr2R 17257385 17257409 chr2R 17257472 17257496 8 86 4.0 3.5 3.8 1.7 111 chr2R 17257385 intron,exon mbl +,CG43108 - chr2R 17257440 intron,exon mbl +,CG43108 - chr2R 17257496 intron,exon mbl +,CG43108 - chr2R_8_17255001 chr2R_17255001 RAL-639 609 chr2R 17389272 17389302 chr2R 17389362 17389393 7 90 2.5 3.0 2.8 1.8 121 chr2R 17389272 intergenic CR44344 - chr2R 17389332 intergenic CR44344 - chr2R 17389393 intergenic CR44344 - chr2R_7_17385001 chr2R_17385001 RAL-639 610 chr2R 17655202 17655231 chr2R 17655279 17655308 9 76 2.0 1.0 1.5 3.6 106 chr2R 17655202 intron CCHa1-R - chr2R 17655255 intron CCHa1-R - chr2R 17655308 intron CCHa1-R - chr2R_9_17655001 chr2R_17655001 RAL-639 611 chr2R 17782373 17782386 chr2R 17783576 17783589 pogo 5 1203 0.5 5.0 2.8 1.3 1216 chr2R 17782373 intergenic CG33981 -,fab1 - chr2R 17782981 intergenic not near genes chr2R 17783589 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-639 612 chr2R 17784029 17784054 chr2R 17784268 17784294 pogo 5 240 1.5 4.0 2.8 1.3 265 chr2R 17784029 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-639 613 chr2R 17929133 17929150 chr2R 17929225 17929243 4 92 2.0 2.5 2.2 1.2 110 chr2R 17929133 intergenic not near genes chr2R 17929188 intergenic not near genes chr2R 17929243 intergenic not near genes chr2R_4_17925001 chr2R_17925001 RAL-639 614 chr2R 17950933 17950952 chr2R 17951155 17951173 4 220 3.5 1.5 2.5 1.1 240 chr2R 17950933 intergenic not near genes chr2R 17951053 intergenic not near genes chr2R 17951173 intergenic not near genes chr2R_4_17950001 chr2R_17950001 RAL-639 615 chr2R 17982930 17982943 chr2R 17983015 17983028 8 85 2.5 3.5 3.0 2.0 98 chr2R 17982930 intron dpr13 - chr2R 17982979 intron dpr13 - chr2R 17983028 intron dpr13 - chr2R_8_17980001 chr2R_17980001 RAL-639 616 chr2R 18045671 18045693 chr2R 18046023 18046044 jockey 6 352 2.0 1.0 1.5 2.4 373 chr2R 18045671 intergenic not near genes chr2R 18045858 intergenic not near genes chr2R 18046044 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-639 617 chr2R 18079163 18079196 chr2R 18079290 18079327 6 130 0.0 2.0 1.0 3.0 164 chr2R 18079163 intron CG34386 + chr2R 18079245 intron CG34386 + chr2R 18079327 intron CG34386 + chr2R_6_18075001 chr2R_18075001 RAL-639 618 chr2R 18308284 18308318 chr2R 18308390 18308424 7 104 2.0 2.0 2.0 2.3 140 chr2R 18308284 intron sbb - chr2R 18308354 intron sbb - chr2R 18308424 intron sbb - chr2R_7_18305001 chr2R_18305001 RAL-639 619 chr2R 18318814 18318820 chr2R 18318899 18318905 5 85 3.5 4.0 3.8 1.0 91 chr2R 18318814 intron sbb - chr2R 18318860 intron sbb - chr2R 18318905 intron sbb - chr2R_5_18315001 chr2R_18315001 RAL-639 620 chr2R 18358387 18358420 chr2R 18372599 18372632 roo 8 14211 1.5 2.5 2.0 2.7 14245 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-639 621 chr2R 18402462 18402474 chr2R 18402644 18402662 4 184 4.0 2.5 3.2 1.0 200 chr2R 18402462 intergenic not near genes chr2R 18402562 intergenic not near genes chr2R 18402662 intergenic not near genes chr2R_4_18400001 chr2R_18400001 RAL-639 622 chr2R 18485205 18485225 chr2R 18485295 18485315 6 90 3.0 1.0 2.0 2.0 110 chr2R 18485205 intron CG30116 - chr2R 18485260 intron CG30116 - chr2R 18485315 intron CG30116 - chr2R_6_18485001 chr2R_18485001 RAL-639 623 chr2R 18486852 18486878 chr2R 18487113 18487140 5 262 4.5 4.5 4.5 0.9 288 chr2R 18486852 intron CG30116 - chr2R 18486996 intron CG30116 - chr2R 18487140 intron CG30116 - chr2R_5_18485001 chr2R_18485001 RAL-639 624 chr2R 18542842 18542857 chr2R 18543279 18543295 4 437 3.0 6.0 4.5 0.7 453 chr2R 18542842 intron Rgk2 + chr2R 18543068 intron Rgk2 + chr2R 18543295 intron Rgk2 + chr2R_4_18540001 chr2R_18540001 RAL-639 625 chr2R 18575809 18575826 chr2R 18581996 18582014 3S18 6 6186 0.5 4.5 2.5 1.7 6205 chr2R 18575809 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-639 626 chr2R 18590868 18590901 chr2R 18600020 18600052 roo 12 9150 2.5 0.5 1.5 4.8 9184 chr2R 18590868 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_12_18595001 chr2R_18595001 RAL-639 627 chr2R 18744744 18744776 chr2R 18744832 18744864 7 84 1.5 1.0 1.2 3.2 120 chr2R 18744744 intron,5` UTR Hs3st-A +,CG17821 - chr2R 18744804 intron,5` UTR Hs3st-A +,CG17821 - chr2R 18744864 intron,5` UTR Hs3st-A +,CG17821 - chr2R_7_18740001 chr2R_18740001 RAL-639 628 chr2R 18953160 18953182 chr2R 18953246 18953269 6 86 4.0 1.0 2.5 1.7 109 chr2R 18953160 intron sano + chr2R 18953214 intron sano + chr2R 18953269 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-639 629 chr2R 18983889 18983907 chr2R 18984611 18984638 5 730 1.0 2.0 1.5 2.0 749 chr2R 18983889 intergenic not near genes chr2R 18984264 intergenic not near genes chr2R 18984638 intergenic not near genes chr2R_5_18980001 chr2R_18980001 RAL-639 630 chr2R 19010746 19010775 chr2R 19010861 19010875 5 113 3.0 3.0 3.0 1.2 129 chr2R 19010746 intergenic not near genes chr2R 19010810 intergenic not near genes chr2R 19010875 intergenic not near genes chr2R_5_19010001 chr2R_19010001 RAL-639 631 chr2R 19053660 19053672 chr2R 19053740 19053752 4 79 2.5 5.0 3.8 0.8 92 chr2R 19053660 intergenic not near genes chr2R 19053706 intergenic not near genes chr2R 19053752 intergenic not near genes chr2R_4_19050001 chr2R_19050001 RAL-639 632 chr2R 19185364 19185383 chr2R 19185448 19185449 7 81 6.5 2.0 4.2 1.3 85 chr2R 19185364 intron hppy + chr2R 19185406 intron hppy + chr2R 19185449 intron hppy + chr2R_7_19185001 chr2R_19185001 RAL-639 633 chr2R 19300962 19300992 chr2R 19301045 19301075 11 82 5.5 1.0 3.2 2.6 113 chr2R 19300962 intron Tab2 + chr2R 19301018 intron Tab2 + chr2R 19301075 intron Tab2 + chr2R_11_19300001 chr2R_19300001 RAL-639 634 chr2R 19331234 19331264 chr2R 19331314 19331343 9 78 1.0 4.0 2.5 2.6 109 chr2R 19331234 intron,intron Rgk1 -,CG34045 + chr2R 19331288 intron,intron Rgk1 -,CG34045 + chr2R 19331343 intron,intron Rgk1 -,CG34045 + chr2R_9_19330001 chr2R_19330001 RAL-639 635 chr2R 19506171 19506202 chr2R 19506279 19506312 6 109 2.0 2.5 2.2 1.9 141 chr2R 19506171 intergenic not near genes chr2R 19506242 intergenic not near genes chr2R 19506312 intergenic not near genes chr2R_6_19505001 chr2R_19505001 RAL-639 636 chr2R 19588755 19588780 chr2R 19588833 19588858 9 77 1.5 0.5 1.0 4.5 103 chr2R 19588755 intron sm - chr2R 19588806 intron sm - chr2R 19588858 intron sm - chr2R_9_19585001 chr2R_19585001 RAL-639 637 chr2R 19617467 19617489 chr2R 19617546 19617568 7 79 3.0 2.5 2.8 1.8 101 chr2R 19617467 intron sm - chr2R 19617518 intron sm - chr2R 19617568 intron sm - chr2R_7_19615001 chr2R_19615001 RAL-639 638 chr2R 19714709 19714734 chr2R 19714785 19714809 9 76 0.0 3.0 1.5 3.6 100 chr2R 19714709 3` UTR CG8517 + chr2R 19714759 3` UTR CG8517 + chr2R 19714809 3` UTR CG8517 + chr2R_9_19710001 chr2R_19710001 RAL-639 639 chr2R 19774011 19774039 chr2R 19774124 19774152 6 112 1.5 0.5 1.0 3.0 141 chr2R 19774011 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774152 intergenic not near genes chr2R_6_19770001 chr2R_19770001 RAL-639 640 chr2R 19776595 19776630 chr2R 19779918 19779953 jockey 13 3323 2.5 4.0 3.2 3.1 3358 chr2R 19776595 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_13_19775001 chr2R_19775001 RAL-639 641 chr2R 19914846 19914878 chr2R 19922258 19922290 mdg1 5 7412 2.0 2.5 2.2 1.6 7444 chr2R 19914846 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922290 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-639 642 chr2R 19957435 19957464 chr2R 19962636 19962665 copia 7 5200 2.0 2.5 2.2 2.2 5230 chr2R 19957435 intergenic CG44623 + chr2R 19960050 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-639 643 chr2R 20069243 20069277 chr2R 20071873 20071907 opus 11 2630 1.5 3.5 2.5 3.1 2664 chr2R 20069243 intergenic not near genes chr2R 20070575 intergenic not near genes chr2R 20071907 intergenic not near genes chr2R_11_20070001 chr2R_20070001 RAL-639 644 chr2R 20118873 20118901 chr2R 20118960 20118989 5 88 1.0 4.0 2.5 1.4 116 chr2R 20118873 intergenic not near genes chr2R 20118931 intergenic not near genes chr2R 20118989 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-639 645 chr2R 20142465 20142481 chr2R 20142541 20142557 5 76 0.0 1.5 0.8 2.8 92 chr2R 20142465 intergenic not near genes chr2R 20142511 intergenic not near genes chr2R 20142557 intergenic not near genes chr2R_5_20140001 chr2R_20140001 RAL-639 646 chr2R 20223949 20223959 chr2R 20224034 20224044 6 84 5.5 1.5 3.5 1.3 95 chr2R 20223949 intergenic not near genes chr2R 20223996 intergenic not near genes chr2R 20224044 intergenic not near genes chr2R_6_20220001 chr2R_20220001 RAL-639 647 chr2R 20233039 20233071 chr2R 20233123 20233155 5 83 0.0 2.5 1.2 2.3 116 chr2R 20233039 intron CG11044 + chr2R 20233097 intron CG11044 + chr2R 20233155 intron CG11044 + chr2R_5_20230001 chr2R_20230001 RAL-639 648 chr2R 20338767 20338784 chr2R 20338847 20338864 4 80 4.0 0.5 2.2 1.2 97 chr2R 20338767 intergenic not near genes chr2R 20338816 intergenic not near genes chr2R 20338864 intergenic not near genes chr2R_4_20335001 chr2R_20335001 RAL-639 649 chr2R 20523047 20523069 chr2R 20523156 20523176 12 110 4.5 1.5 3.0 3.0 129 chr2R 20523047 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523176 intergenic not near genes chr2R_12_20520001 chr2R_20520001 RAL-639 650 chr2R 20572574 20572586 chr2R 20572664 20572676 4 90 2.0 2.5 2.2 1.2 102 chr2R 20572574 intron qsm - chr2R 20572625 intron qsm - chr2R 20572676 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-639 651 chr2R 20601718 20601755 chr2R 20601803 20601840 14 84 0.0 0.5 0.2 11.7 122 chr2R 20601718 intron bl + chr2R 20601779 intron bl + chr2R 20601840 intron bl + chr2R_14_20600001 chr2R_20600001 RAL-639 652 chr2R 20604188 20604222 chr2R 20604272 20604306 9 78 3.5 1.5 2.5 2.6 118 chr2R 20604188 intron bl + chr2R 20604247 intron bl + chr2R 20604306 intron bl + chr2R_9_20600001 chr2R_20600001 RAL-639 653 chr2R 20678213 20678234 chr2R 20678343 20678364 6 130 1.0 3.5 2.2 1.9 151 chr2R 20678213 intergenic not near genes chr2R 20678288 intergenic not near genes chr2R 20678364 intergenic not near genes chr2R_6_20675001 chr2R_20675001 RAL-639 654 chr2R 20690763 20690781 chr2R 20690836 20690857 7 75 6.5 3.0 4.8 1.2 94 chr2R 20690763 intergenic not near genes chr2R 20690810 intergenic not near genes chr2R 20690857 intergenic not near genes chr2R_7_20690001 chr2R_20690001 RAL-639 655 chr2R 20705203 20705225 chr2R 20705280 20705305 4 79 3.0 3.0 3.0 1.0 102 chr2R 20705203 intron dpr + chr2R 20705254 intron dpr + chr2R 20705305 intron dpr + chr2R_4_20705001 chr2R_20705001 RAL-639 656 chr2R 20783313 20783329 chr2R 20788085 20788100 F-element 6 4771 2.5 2.5 2.5 1.7 4787 chr2R 20783313 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788100 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-639 657 chr2R 20812244 20812277 chr2R 20812323 20812357 5 80 2.0 3.0 2.5 1.4 113 chr2R 20812244 intergenic not near genes chr2R 20812300 intergenic not near genes chr2R 20812357 intergenic not near genes chr2R_5_20810001 chr2R_20810001 RAL-639 658 chr2R 20861547 20861563 chr2R 20861832 20861848 7 284 0.0 7.0 3.5 1.6 301 chr2R 20861547 intergenic not near genes chr2R 20861698 intergenic not near genes chr2R 20861848 intergenic not near genes chr2R_7_20860001 chr2R_20860001 RAL-639 659 chr2R 21113480 21113486 chr2R 21113569 21113575 4 89 0.0 2.0 1.0 2.0 95 chr2R 21113480 intron ktub + chr2R 21113528 intron ktub + chr2R 21113575 intron ktub + chr2R_4_21110001 chr2R_21110001 RAL-639 660 chr2R 21117468 21117490 chr2R 21117824 21117846 5 356 1.0 1.5 1.2 2.3 378 chr2R 21117468 intron ktub + chr2R 21117657 intron ktub + chr2R 21117846 intron ktub + chr2R_5_21115001 chr2R_21115001 RAL-639 661 chr2R 21188219 21188233 chr2R 21188300 21188314 8 81 4.0 3.0 3.5 1.8 95 chr2R 21188219 exon tud + chr2R 21188266 intron tud + chr2R 21188314 intron tud + chr2R_8_21185001 chr2R_21185001 RAL-639 662 chr2R 21221015 21221025 chr2R 21221105 21221113 4 90 7.0 5.0 6.0 0.6 98 chr2R 21221015 exon ASPP - chr2R 21221064 exon ASPP - chr2R 21221113 exon ASPP - chr2R_4_21220001 chr2R_21220001 RAL-639 663 chr2R 21221026 21221044 chr2R 21221103 21221136 7 89 3.5 5.0 4.2 1.3 110 chr2R 21221026 exon ASPP - chr2R 21221081 exon ASPP - chr2R 21221136 exon ASPP - chr2R_7_21220001 chr2R_21220001 RAL-639 664 chr2R 21408374 21408401 chr2R 21408466 21408492 5 92 2.0 0.0 1.0 2.5 118 chr2R 21408374 intron Sdc - chr2R 21408433 intron Sdc - chr2R 21408492 intron Sdc - chr2R_5_21405001 chr2R_21405001 RAL-639 665 chr2R 21469948 21469955 chr2R 21470028 21470042 4 85 1.0 1.5 1.2 1.8 94 chr2R 21469948 intron Sdc - chr2R 21469995 intron Sdc - chr2R 21470042 intron Sdc - chr2R_4_21465001 chr2R_21465001 RAL-639 666 chr2R 21546792 21546808 chr2R 21546867 21546883 6 78 5.5 3.0 4.2 1.2 91 chr2R 21546792 intron Egfr + chr2R 21546838 intron Egfr + chr2R 21546883 intron Egfr + chr2R_6_21545001 chr2R_21545001 RAL-639 667 chr2R 21759563 21759590 chr2R 21759648 21759677 4 86 0.5 0.5 0.5 2.7 114 chr2R 21759563 intergenic not near genes chr2R 21759620 intergenic not near genes chr2R 21759677 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-639 668 chr2R 21809524 21809545 chr2R 21817763 21817785 roo 5 8239 4.0 2.0 3.0 1.2 8261 chr2R 21809524 intergenic not near genes chr2R 21813654 intergenic not near genes chr2R 21817785 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-639 669 chr2R 21840799 21840828 chr2R 21840873 21840890 9 74 2.5 2.5 2.5 2.6 91 chr2R 21840799 intergenic not near genes chr2R 21840844 intergenic not near genes chr2R 21840890 intergenic not near genes chr2R_9_21840001 chr2R_21840001 RAL-639 670 chr2R 21913718 21913740 chr2R 21913797 21913819 5 79 1.5 4.5 3.0 1.2 101 chr2R 21913718 intron Fili + chr2R 21913768 intron Fili + chr2R 21913819 intron Fili + chr2R_5_21910001 chr2R_21910001 RAL-639 671 chr2R 22009795 22009802 chr2R 22009871 22009878 5 76 1.5 2.0 1.8 1.8 83 chr2R 22009795 intron CG34370 - chr2R 22009836 intron CG34370 - chr2R 22009878 intron CG34370 - chr2R_5_22005001 chr2R_22005001 RAL-639 672 chr2R 22029486 22029492 chr2R 22029624 22029630 5 138 2.5 1.5 2.0 1.7 144 chr2R 22029486 intron CG34370 - chr2R 22029558 intron CG34370 - chr2R 22029630 intron CG34370 - chr2R_5_22025001 chr2R_22025001 RAL-639 673 chr2R 22035541 22035574 chr2R 22035628 22035661 4 87 0.5 2.5 1.5 1.6 120 chr2R 22035541 intron,3` UTR CG34370 -,CG9308 + chr2R 22035601 intron,3` UTR CG34370 -,CG9308 + chr2R 22035661 intron,3` UTR CG34370 -,CG9308 + chr2R_4_22035001 chr2R_22035001 RAL-639 674 chr2R 22072681 22072710 chr2R 22072766 22072795 8 84 4.0 3.0 3.5 1.8 114 chr2R 22072681 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-639 675 chr2R 22185674 22185708 chr2R 22185772 22185807 11 99 0.5 0.0 0.2 9.2 133 chr2R 22185674 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_11_22185001 chr2R_22185001 RAL-639 676 chr2R 22190058 22190094 chr2R 22190192 22190228 8 133 1.5 1.0 1.2 3.6 170 chr2R 22190058 3` UTR Swim - chr2R 22190143 3` UTR Swim - chr2R 22190228 3` UTR Swim - chr2R_8_22190001 chr2R_22190001 RAL-639 677 chr2R 22197641 22197670 chr2R 22197747 22197777 8 106 1.5 3.0 2.2 2.5 136 chr2R 22197641 intron Swim - chr2R 22197709 intron Swim - chr2R 22197777 intron Swim - chr2R_8_22195001 chr2R_22195001 RAL-639 678 chr2R 22349704 22349717 chr2R 22351479 22351501 jockey 4 1781 5.0 3.0 4.0 0.8 1797 chr2R 22349704 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351501 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-639 679 chr2R 22360383 22360390 chr2R 22360811 22360823 jockey 5 432 3.0 4.0 3.5 1.1 440 chr2R 22360383 intron Liprin-gamma - chr2R 22360603 intron Liprin-gamma - chr2R 22360823 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-639 680 chr2R 22525758 22525785 chr2R 22529317 22529337 jockey 9 3558 2.0 2.0 2.0 3.0 3579 chr2R 22525758 intron px - chr2R 22527548 intron px - chr2R 22529337 intron px - chr2R_9_22525001 chr2R_22525001 RAL-639 681 chr2R 22623456 22623483 chr2R 22623593 22623623 10 140 0.5 2.5 1.5 4.0 167 chr2R 22623456 intron CG33143 + chr2R 22623540 intron CG33143 + chr2R 22623623 intron CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-639 682 chr2R 22645791 22645796 chr2R 22645855 22645889 4 85 1.0 3.5 2.2 1.2 98 chr2R 22645791 intron CG2852 - chr2R 22645840 intron CG2852 - chr2R 22645889 intron CG2852 - chr2R_4_22645001 chr2R_22645001 RAL-639 683 chr2R 22662263 22662274 chr2R 22662364 22662375 5 100 2.0 5.0 3.5 1.1 112 chr2R 22662263 intron CG42566 + chr2R 22662319 intron CG42566 + chr2R 22662375 intron CG42566 + chr2R_5_22660001 chr2R_22660001 RAL-639 684 chr2R 22839494 22839510 chr2R 22839572 22839585 4 78 2.0 0.0 1.0 2.0 91 chr2R 22839494 intergenic CG9825 + chr2R 22839540 intergenic CG9825 + chr2R 22839585 intergenic CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-639 685 chr2R 22944822 22944846 chr2R 22945006 22945032 6 185 4.0 2.0 3.0 1.5 210 chr2R 22944822 exon CG42694 + chr2R 22944927 exon CG42694 + chr2R 22945032 exon CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-639 686 chr2R 23029613 23029628 chr2R 23029690 23029705 6 76 4.5 3.0 3.8 1.2 92 chr2R 23029613 intron,intron twi +,CG42741 - chr2R 23029659 intron,intron twi +,CG42741 - chr2R 23029705 intron,intron twi +,CG42741 - chr2R_6_23025001 chr2R_23025001 RAL-639 687 chr2R 23052666 23052684 chr2R 23052742 23052760 7 76 2.0 8.0 5.0 1.2 94 chr2R 23052666 intergenic not near genes chr2R 23052713 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-639 688 chr2R 23054003 23054027 chr2R 23054081 23054105 5 76 1.5 1.0 1.2 2.3 102 chr2R 23054003 intergenic not near genes chr2R 23054054 intergenic not near genes chr2R 23054105 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-639 689 chr2R 23190022 23190051 chr2R 23190102 23190131 4 80 1.5 0.0 0.8 2.2 109 chr2R 23190022 intron CG34371 - chr2R 23190076 intron CG34371 - chr2R 23190131 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-639 690 chr2R 23219006 23219023 chr2R 23219245 23219259 5 238 1.0 0.0 0.5 3.3 253 chr2R 23219006 intergenic not near genes chr2R 23219132 intergenic not near genes chr2R 23219259 intergenic not near genes chr2R_5_23215001 chr2R_23215001 RAL-639 691 chr2R 23351919 23351926 chr2R 23352005 23352012 4 86 7.5 4.5 6.0 0.6 93 chr2R 23351919 exon CG34210 + chr2R 23351966 exon CG34210 + chr2R 23352012 3` UTR CG34210 + chr2R_4_23350001 chr2R_23350001 RAL-639 692 chr2R 23351929 23351949 chr2R 23352002 23352035 10 83 4.0 4.0 4.0 2.0 106 chr2R 23351929 exon CG34210 + chr2R 23351982 3` UTR CG34210 + chr2R 23352035 3` UTR CG34210 + chr2R_10_23350001 chr2R_23350001 RAL-639 693 chr2R 23402608 23402642 chr2R 23407684 23407718 flea 8 5075 0.5 2.5 1.5 3.2 5110 chr2R 23402608 intergenic CG3520 - chr2R 23405163 intergenic not near genes chr2R 23407718 intergenic not near genes chr2R_8_23405001 chr2R_23405001 RAL-639 694 chr2R 23437235 23437243 chr2R 23437312 23437319 5 76 4.0 4.5 4.2 1.0 84 chr2R 23437235 intergenic not near genes chr2R 23437277 intergenic not near genes chr2R 23437319 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-639 695 chr2R 23508922 23508943 chr2R 23509039 23509060 6 117 4.0 0.5 2.2 1.9 138 chr2R 23508922 intergenic not near genes chr2R 23508991 intergenic not near genes chr2R 23509060 intergenic not near genes chr2R_6_23505001 chr2R_23505001 RAL-639 696 chr2R 23607049 23607192 chr2R 23607130 23607285 4 87 3.5 3.5 3.5 0.9 236 chr2R 23607049 intron CG17664 - chr2R 23607167 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_4_23605001 chr2R_23605001 RAL-639 697 chr2R 23636718 23636741 chr2R 23636796 23636819 11 77 4.0 4.5 4.2 2.1 101 chr2R 23636718 intron retn + chr2R 23636768 intron retn + chr2R 23636819 intron retn + chr2R_11_23635001 chr2R_23635001 RAL-639 698 chr2R 23744763 23744791 chr2R 23744842 23744870 11 78 3.5 2.0 2.8 2.9 107 chr2R 23744763 intron egl - chr2R 23744816 intron egl - chr2R 23744870 intron egl - chr2R_11_23740001 chr2R_23740001 RAL-639 699 chr2R 23914300 23914332 chr2R 23921923 23921956 412 8 7620 3.0 3.5 3.2 1.9 7656 chr2R 23914300 exon kcc + chr2R 23918128 intron kcc + chr2R 23921956 intron kcc + chr2R_8_23915001 chr2R_23915001 RAL-639 700 chr2R 23986513 23986547 chr2R 23986593 23986627 8 80 1.5 2.0 1.8 2.9 114 chr2R 23986513 intron Phm - chr2R 23986570 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_8_23985001 chr2R_23985001 RAL-639 701 chr2R 24031388 24031413 chr2R 24031471 24031497 7 83 2.5 3.5 3.0 1.8 109 chr2R 24031388 5` UTR CG30172 - chr2R 24031442 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-639 702 chr2R 24177235 24177246 chr2R 24184720 24184730 412 5 7485 6.5 1.0 3.8 1.0 7495 chr2R 24177235 3` UTR Nop60B + chr2R 24180982 intron Nop60B + chr2R 24184730 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-639 703 chr2R 24331607 24331638 chr2R 24331698 24331729 10 91 2.5 2.0 2.2 3.1 122 chr2R 24331607 3` UTR slbo - chr2R 24331668 3` UTR slbo - chr2R 24331729 3` UTR slbo - chr2R_10_24330001 chr2R_24330001 RAL-639 704 chr2R 24353431 24353460 chr2R 24361791 24361799 roo 7 8358 4.0 3.0 3.5 1.6 8368 chr2R 24353431 intron,intron bs +,CR44811 - chr2R 24357615 intron,intron bs +,CR44811 - chr2R 24361799 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-639 705 chr2R 24385637 24385672 chr2R 24385743 24385761 8 104 2.0 3.0 2.5 2.3 124 chr2R 24385637 intron mAChR-A - chr2R 24385699 intron mAChR-A - chr2R 24385761 intron mAChR-A - chr2R_8_24385001 chr2R_24385001 RAL-639 706 chr2R 24430920 24430950 chr2R 24431007 24431038 6 88 0.0 4.0 2.0 2.0 118 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430979 intergenic CG15873 -,Pgam5-2 - chr2R 24431038 intergenic Pgam5-2 -,CG15873 - chr2R_6_24430001 chr2R_24430001 RAL-639 707 chr2R 24590094 24590145 chr2R 24590202 24590237 8 105 0.0 5.5 2.8 2.1 143 chr2R 24590094 intron pio + chr2R 24590166 intron pio + chr2R 24590237 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-639 708 chr2R 24592948 24592979 chr2R 24593041 24593072 13 92 1.0 2.5 1.8 4.6 124 chr2R 24592948 intron pio + chr2R 24593010 intron pio + chr2R 24593072 intron pio + chr2R_13_24590001 chr2R_24590001 RAL-639 709 chr2R 24647606 24647617 chr2R 24655163 24655174 412 7 7557 0.0 3.5 1.8 2.5 7568 chr2R 24647606 intergenic not near genes chr2R 24651390 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-639 710 chr2R 24687634 24687669 chr2R 24687719 24687742 10 82 3.0 2.5 2.8 2.6 108 chr2R 24687634 intergenic Mmp1 - chr2R 24687688 intergenic Mmp1 - chr2R 24687742 intergenic Mmp1 - chr2R_10_24685001 chr2R_24685001 RAL-639 711 chr2R 24727889 24727903 chr2R 24735397 24735411 mdg1 4 7508 2.5 6.5 4.5 0.7 7522 chr2R 24727889 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735411 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-639 712 chr2R 24727904 24727916 chr2R 24735392 24735417 mdg1 7 7504 1.0 6.5 3.8 1.5 7513 chr2R 24727904 intron Mid1 - chr2R 24731660 intron Mid1 - chr2R 24735417 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-639 713 chr2R 24763609 24763628 chr2R 24765585 24765602 G2 14 1976 7.0 6.5 6.8 1.8 1993 chr2R 24763609 exon CG3894 + chr2R 24764606 intron CG3894 + chr2R 24765602 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-639 714 chr2R 24823816 24823833 chr2R 24823922 24823939 10 104 4.5 7.0 5.8 1.5 123 chr2R 24823816 intron Dll + chr2R 24823878 intron Dll + chr2R 24823939 intron Dll + chr2R_10_24820001 chr2R_24820001 RAL-639 715 chr2R 24859840 24859867 chr2R 24859925 24859953 4 86 2.0 2.5 2.2 1.2 113 chr2R 24859840 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859953 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-639 716 chr2R 24884054 24884075 chr2R 24884136 24884157 7 82 4.5 4.5 4.5 1.3 103 chr2R 24884054 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884157 intron NKAIN + chr2R_7_24880001 chr2R_24880001 RAL-639 717 chr2R 24953277 24953305 chr2R 24953360 24953387 13 83 3.5 2.0 2.8 3.4 110 chr2R 24953277 3` UTR CG12851 + chr2R 24953332 3` UTR CG12851 + chr2R 24953387 3` UTR CG12851 + chr2R_13_24950001 chr2R_24950001 RAL-639 718 chr2R 25014543 25014568 chr2R 25014619 25014644 9 76 3.0 2.0 2.5 2.6 101 chr2R 25014543 intron uzip + chr2R 25014594 intron uzip + chr2R 25014644 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-639 719 chr2R 25105482 25105496 chr2R 25105584 25105597 6 102 2.0 1.5 1.8 2.1 115 chr2R 25105482 intron lov - chr2R 25105540 intron lov - chr2R 25105597 intron lov - chr2R_6_25105001 chr2R_25105001 RAL-639 720 chr2R 25141660 25141679 chr2R 25159350 25159369 roo 4 17690 2.0 3.5 2.8 1.1 17709 chr2R 25141660 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159369 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-639 721 chr3L 110220 110241 chr3L 119387 119405 roo 5 9166 4.5 3.5 4.0 1.0 9185 chr3L 110220 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119405 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-639 722 chr3L 402689 402717 chr3L 409741 409770 297 18 7052 5.0 4.0 4.5 3.3 7081 chr3L 402689 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_18_405001 chr3L_405001 RAL-639 723 chr3L 459984 460008 chr3L 460061 460085 9 76 2.5 3.0 2.8 2.4 101 chr3L 459984 intron klar - chr3L 460034 intron klar - chr3L 460085 intron klar - chr3L_9_460001 chr3L_460001 RAL-639 724 chr3L 514293 514303 chr3L 514357 514380 8 75 1.5 3.5 2.5 2.3 87 chr3L 514293 intron klar - chr3L 514336 intron klar - chr3L 514380 intron klar - chr3L_8_510001 chr3L_510001 RAL-639 725 chr3L 563971 563996 chr3L 564150 564175 11 178 2.5 2.0 2.2 3.4 204 chr3L 563971 intron hipk + chr3L 564073 intron hipk + chr3L 564175 intron hipk + chr3L_11_560001 chr3L_560001 RAL-639 726 chr3L 611344 611375 chr3L 611427 611458 8 83 3.5 2.0 2.8 2.1 114 chr3L 611344 intergenic not near genes chr3L 611401 intergenic not near genes chr3L 611458 intergenic not near genes chr3L_8_610001 chr3L_610001 RAL-639 727 chr3L 651392 651424 chr3L 651480 651512 11 87 2.5 4.0 3.2 2.6 120 chr3L 651392 intergenic Gale +,CG3402 - chr3L 651452 intergenic CG3402 -,Gale + chr3L 651512 intergenic CG3402 -,Gale + chr3L_11_650001 chr3L_650001 RAL-639 728 chr3L 705902 705932 chr3L 705998 706028 13 96 1.5 1.0 1.2 5.9 126 chr3L 705902 intergenic CG13895 -,CR44514 + chr3L 705965 3` UTR CG13895 - chr3L 706028 3` UTR CG13895 - chr3L_13_705001 chr3L_705001 RAL-639 729 chr3L 925174 925210 chr3L 932600 932633 mdg1 6 7426 2.0 2.0 2.0 2.0 7459 chr3L 925174 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-639 730 chr3L 935526 935552 chr3L 935661 935687 8 138 1.5 3.0 2.2 2.5 161 chr3L 935526 intron Glut1 + chr3L 935606 intron Glut1 + chr3L 935687 intron Glut1 + chr3L_8_935001 chr3L_935001 RAL-639 731 chr3L 939771 939809 chr3L 940892 940930 jockey 13 1120 2.0 3.5 2.8 3.4 1159 chr3L 939771 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940930 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-639 732 chr3L 1045547 1045580 chr3L 1045646 1045679 13 98 3.0 3.0 3.0 3.2 132 chr3L 1045547 intron bab1 - chr3L 1045613 intron bab1 - chr3L 1045679 intron bab1 - chr3L_13_1045001 chr3L_1045001 RAL-639 733 chr3L 1047364 1047384 chr3L 1055167 1055196 412 4 7807 0.0 4.0 2.0 1.3 7832 chr3L 1047364 intron bab1 - chr3L 1051280 intron bab1 - chr3L 1055196 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-639 734 chr3L 1154137 1154156 chr3L 1163287 1163305 roo 7 9150 1.0 1.0 1.0 3.5 9168 chr3L 1154137 intron bab2 - chr3L 1158721 intron bab2 - chr3L 1163305 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-639 735 chr3L 1219594 1219619 chr3L 1227327 1227352 412 6 7732 3.5 1.0 2.2 1.9 7758 chr3L 1219594 intron mwh + chr3L 1223473 intron mwh + chr3L 1227352 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-639 736 chr3L 1265544 1265568 chr3L 1265619 1265629 8 72 2.5 2.5 2.5 2.3 85 chr3L 1265544 intron CG9134 + chr3L 1265586 intron CG9134 + chr3L 1265629 intron CG9134 + chr3L_8_1265001 chr3L_1265001 RAL-639 737 chr3L 1278809 1278834 chr3L 1278892 1278915 5 81 2.0 1.0 1.5 2.0 106 chr3L 1278809 intron CG32333 + chr3L 1278862 intron CG32333 + chr3L 1278915 intron CG32333 + chr3L_5_1275001 chr3L_1275001 RAL-639 738 chr3L 1324625 1324657 chr3L 1324703 1324733 5 78 2.0 2.5 2.2 1.6 108 chr3L 1324625 intron Myo61F + chr3L 1324679 intron Myo61F + chr3L 1324733 intron Myo61F + chr3L_5_1320001 chr3L_1320001 RAL-639 739 chr3L 1347158 1347193 chr3L 1347243 1347278 10 82 1.5 4.0 2.8 2.6 120 chr3L 1347158 intron Ptp61F - chr3L 1347218 intron Ptp61F - chr3L 1347278 intron Ptp61F - chr3L_10_1345001 chr3L_1345001 RAL-639 740 chr3L 1396742 1396752 chr3L 1396826 1396836 6 84 4.0 2.5 3.2 1.4 94 chr3L 1396742 intron Ptp61F - chr3L 1396789 intron Ptp61F - chr3L 1396836 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-639 741 chr3L 1415775 1415808 chr3L 1415857 1415887 13 81 4.0 2.5 3.2 3.1 112 chr3L 1415775 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415887 intron Ptp61F - chr3L_13_1415001 chr3L_1415001 RAL-639 742 chr3L 1424762 1424772 chr3L 1430014 1430024 Rt1a 4 5250 0.5 5.0 2.8 1.1 5262 chr3L 1424762 intron Ptp61F - chr3L 1427393 intron Ptp61F - chr3L 1430024 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-639 743 chr3L 1501999 1502020 chr3L 1502080 1502098 8 80 0.5 3.0 1.8 2.9 99 chr3L 1501999 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502098 intron pUf68 - chr3L_8_1500001 chr3L_1500001 RAL-639 744 chr3L 1505995 1506032 chr3L 1513592 1513627 17.6 10 7596 3.5 4.0 3.8 2.1 7632 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509811 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-639 745 chr3L 1922457 1922467 chr3L 1922535 1922544 6 78 8.5 10.0 9.2 0.6 87 chr3L 1922457 intron Dbx + chr3L 1922500 intron Dbx + chr3L 1922544 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-639 746 chr3L 2016839 2016865 chr3L 2016925 2016951 10 86 1.0 0.5 0.8 5.6 112 chr3L 2016839 intergenic not near genes chr3L 2016895 intergenic not near genes chr3L 2016951 intergenic not near genes chr3L_10_2015001 chr3L_2015001 RAL-639 747 chr3L 2108250 2108281 chr3L 2113454 2113485 copia 5 5204 1.5 0.5 1.0 2.5 5235 chr3L 2108250 intron sls - chr3L 2110868 intron sls - chr3L 2113485 intron sls - chr3L_5_2110001 chr3L_2110001 RAL-639 748 chr3L 2168775 2168807 chr3L 2168866 2168898 6 91 2.0 2.5 2.2 1.9 123 chr3L 2168775 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-639 749 chr3L 2308005 2308032 chr3L 2308109 2308138 6 105 3.0 2.0 2.5 1.7 133 chr3L 2308005 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-639 750 chr3L 2331582 2331603 chr3L 2331659 2331680 7 77 1.0 3.5 2.2 2.2 98 chr3L 2331582 intron MsR1 + chr3L 2331631 intron MsR1 + chr3L 2331680 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-639 751 chr3L 2337076 2337100 chr3L 2337491 2337514 5 415 1.0 0.5 0.8 2.8 438 chr3L 2337076 intron MsR1 + chr3L 2337295 intron MsR1 + chr3L 2337514 intron MsR1 + chr3L_5_2335001 chr3L_2335001 RAL-639 752 chr3L 2447502 2447536 chr3L 2456658 2456689 roo 8 9156 1.0 2.0 1.5 3.2 9187 chr3L 2447502 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-639 753 chr3L 2478882 2479036 chr3L 2478961 2479132 15 95 0.5 3.0 1.8 5.4 250 chr3L 2478882 intron CG45186 + chr3L 2479007 intron CG45186 + chr3L 2479132 intron CG45186 + chr3L_15_2475001 chr3L_2475001 RAL-639 754 chr3L 2533649 2533677 chr3L 2533731 2533759 10 82 6.0 1.0 3.5 2.2 110 chr3L 2533649 intron Spn - chr3L 2533704 intron Spn - chr3L 2533759 intron Spn - chr3L_10_2530001 chr3L_2530001 RAL-639 755 chr3L 2623389 2623408 chr3L 2623474 2623495 7 85 1.5 3.5 2.5 2.0 106 chr3L 2623389 intron Pxn - chr3L 2623442 intron Pxn - chr3L 2623495 intron Pxn - chr3L_7_2620001 chr3L_2620001 RAL-639 756 chr3L 2665748 2665766 chr3L 2665836 2665854 5 88 2.5 3.0 2.8 1.3 106 chr3L 2665748 intron Fife - chr3L 2665801 intron Fife - chr3L 2665854 intron Fife - chr3L_5_2665001 chr3L_2665001 RAL-639 757 chr3L 2683945 2683979 chr3L 2684021 2684055 7 76 0.5 3.5 2.0 2.3 110 chr3L 2683945 intron Fife - chr3L 2684000 intron Fife - chr3L 2684055 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-639 758 chr3L 2700591 2700612 chr3L 2700674 2700704 6 86 2.0 2.5 2.2 1.9 113 chr3L 2700591 intron Fife - chr3L 2700648 intron Fife - chr3L 2700704 intron Fife - chr3L_6_2700001 chr3L_2700001 RAL-639 759 chr3L 2751458 2751469 chr3L 2755753 2755756 F-element 4 4293 3.5 6.5 5.0 0.7 4298 chr3L 2751458 intron Mrtf - chr3L 2753607 intron Mrtf - chr3L 2755756 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-639 760 chr3L 2906069 2906098 chr3L 2906156 2906183 9 86 3.5 4.0 3.8 1.9 114 chr3L 2906069 intron Shab + chr3L 2906126 intron Shab + chr3L 2906183 intron Shab + chr3L_9_2905001 chr3L_2905001 RAL-639 761 chr3L 2911781 2911809 chr3L 2911875 2911903 7 91 1.0 3.0 2.0 2.3 122 chr3L 2911781 intron Shab + chr3L 2911842 intron Shab + chr3L 2911903 intron Shab + chr3L_7_2910001 chr3L_2910001 RAL-639 762 chr3L 3027603 3027631 chr3L 3028604 3028631 7 1001 1.5 3.0 2.2 2.2 1028 chr3L 3027603 intergenic not near genes chr3L 3028117 intergenic not near genes chr3L 3028631 intergenic not near genes chr3L_7_3025001 chr3L_3025001 RAL-639 763 chr3L 3061288 3061317 chr3L 3069869 3069900 Tirant 9 8580 1.5 2.0 1.8 3.2 8612 chr3L 3061288 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_9_3065001 chr3L_3065001 RAL-639 764 chr3L 3178728 3178760 chr3L 3178811 3178843 18 82 2.0 0.0 1.0 9.0 115 chr3L 3178728 intergenic CG14964 -,Girdin + chr3L 3178786 intergenic Girdin +,CG14964 - chr3L 3178843 intergenic Girdin +,CG14964 - chr3L_18_3175001 chr3L_3175001 RAL-639 765 chr3L 3259618 3259826 chr3L 3259713 3259926 8 95 0.0 2.0 1.0 4.0 308 chr3L 3259618 intron ckd + chr3L 3259772 intron ckd + chr3L 3259926 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-639 766 chr3L 3269118 3269127 chr3L 3269209 3269218 4 91 0.0 3.0 1.5 1.6 100 chr3L 3269118 intergenic CG34265 + chr3L 3269168 intergenic CG34265 + chr3L 3269218 intergenic CG34265 + chr3L_4_3265001 chr3L_3265001 RAL-639 767 chr3L 3281459 3281470 chr3L 3281953 3281956 Doc 4 490 1.5 7.0 4.2 0.8 497 chr3L 3281459 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281956 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-639 768 chr3L 3281471 3281473 chr3L 3281949 3281969 Doc 5 491 1.5 7.0 4.2 1.0 498 chr3L 3281471 intron CG12017 + chr3L 3281720 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-639 769 chr3L 3317531 3317563 chr3L 3317610 3317638 9 78 2.5 3.0 2.8 2.4 107 chr3L 3317531 intergenic Drsl5 +,PIG-C - chr3L 3317584 intergenic Drsl5 +,PIG-C - chr3L 3317638 intergenic PIG-C -,Drsl5 + chr3L_9_3315001 chr3L_3315001 RAL-639 770 chr3L 3475078 3475096 chr3L 3475521 3475540 jockey 6 444 2.5 2.5 2.5 1.7 462 chr3L 3475078 intron CG42324 + chr3L 3475309 intron CG42324 + chr3L 3475540 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-639 771 chr3L 3565948 3565967 chr3L 3566024 3566043 5 75 2.5 3.5 3.0 1.2 95 chr3L 3565948 intron Eip63E + chr3L 3565996 intron Eip63E + chr3L 3566043 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-639 772 chr3L 3601302 3601331 chr3L 3606610 3606642 copia 6 5310 0.5 0.0 0.2 5.0 5340 chr3L 3601302 intron Eip63E + chr3L 3603972 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-639 773 chr3L 3627235 3627251 chr3L 3627340 3627356 4 105 1.5 0.5 1.0 2.0 121 chr3L 3627235 intron dar1 + chr3L 3627296 intron dar1 + chr3L 3627356 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-639 774 chr3L 3726644 3726671 chr3L 3726727 3726754 4 84 2.5 1.0 1.8 1.4 110 chr3L 3726644 intron CG32264 - chr3L 3726699 intron CG32264 - chr3L 3726754 intron CG32264 - chr3L_4_3725001 chr3L_3725001 RAL-639 775 chr3L 3742612 3742623 chr3L 3743616 3743635 6 1006 26.5 6.5 16.5 0.3 1023 chr3L 3742612 intron CG32264 - chr3L 3743124 intron CG32264 - chr3L 3743635 intron CG32264 - chr3L_6_3740001 chr3L_3740001 RAL-639 776 chr3L 3815057 3815082 chr3L 3815138 3815163 8 80 2.0 2.0 2.0 2.7 106 chr3L 3815057 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815163 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-639 777 chr3L 3890963 3890987 chr3L 3891043 3891068 9 81 0.0 0.0 0.0 9.0 105 chr3L 3890963 intergenic not near genes chr3L 3891016 intergenic not near genes chr3L 3891068 intergenic not near genes chr3L_9_3890001 chr3L_3890001 RAL-639 778 chr3L 4015736 4015766 chr3L 4015819 4015849 5 80 1.0 2.0 1.5 2.0 113 chr3L 4015736 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-639 779 chr3L 4058842 4058874 chr3L 4058922 4058954 8 80 1.0 1.5 1.2 3.6 112 chr3L 4058842 3` UTR CG1136 + chr3L 4058898 3` UTR CG1136 + chr3L 4058954 3` UTR CG1136 + chr3L_8_4055001 chr3L_4055001 RAL-639 780 chr3L 4214537 4214542 chr3L 4214679 4214684 4 142 3.0 4.5 3.8 0.8 147 chr3L 4214537 intron CG43367 + chr3L 4214610 intron CG43367 + chr3L 4214684 intron CG43367 + chr3L_4_4210001 chr3L_4210001 RAL-639 781 chr3L 4347828 4347860 chr3L 4347914 4347936 8 84 2.0 0.5 1.2 3.6 108 chr3L 4347828 intron Cip4 - chr3L 4347882 intron Cip4 - chr3L 4347936 intron Cip4 - chr3L_8_4345001 chr3L_4345001 RAL-639 782 chr3L 4631640 4631667 chr3L 4631716 4631743 10 75 1.5 1.0 1.2 4.5 103 chr3L 4631640 intron axo - chr3L 4631692 intron axo - chr3L 4631743 intron axo - chr3L_10_4630001 chr3L_4630001 RAL-639 783 chr3L 4652576 4652597 chr3L 4652659 4652679 7 83 1.0 1.0 1.0 3.5 103 chr3L 4652576 intron axo - chr3L 4652628 intron axo - chr3L 4652679 intron axo - chr3L_7_4650001 chr3L_4650001 RAL-639 784 chr3L 4657971 4658001 chr3L 4658433 4658457 13 461 0.0 3.0 1.5 5.2 486 chr3L 4657971 intron axo - chr3L 4658214 intron axo - chr3L 4658457 intron axo - chr3L_13_4655001 chr3L_4655001 RAL-639 785 chr3L 4714603 4714618 chr3L 4714681 4714696 5 78 5.0 2.5 3.8 1.0 93 chr3L 4714603 intron RhoGEF64C + chr3L 4714650 intron RhoGEF64C + chr3L 4714696 intron RhoGEF64C + chr3L_5_4710001 chr3L_4710001 RAL-639 786 chr3L 4837890 4837925 chr3L 4837966 4838003 7 78 1.0 3.5 2.2 2.2 113 chr3L 4837890 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838003 3` UTR CG13707 - chr3L_7_4835001 chr3L_4835001 RAL-639 787 chr3L 4858306 4858337 chr3L 4858394 4858403 13 86 4.5 4.0 4.2 2.5 97 chr3L 4858306 intergenic not near genes chr3L 4858354 intergenic not near genes chr3L 4858403 intergenic not near genes chr3L_13_4855001 chr3L_4855001 RAL-639 788 chr3L 4901134 4901149 chr3L 4907322 4907339 diver 6 6190 2.0 1.0 1.5 2.4 6205 chr3L 4901134 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907339 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-639 789 chr3L 4907980 4907989 chr3L 4908056 4908065 4 76 0.5 1.0 0.8 2.2 85 chr3L 4907980 intergenic not near genes chr3L 4908022 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-639 790 chr3L 5034164 5034191 chr3L 5043316 5043343 roo 4 9152 2.0 5.0 3.5 0.9 9179 chr3L 5034164 intron Con - chr3L 5038754 intron Con - chr3L 5043343 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-639 791 chr3L 5045467 5045478 chr3L 5050248 5050259 Doc 4 4781 4.0 3.5 3.8 0.8 4792 chr3L 5045467 intron Con - chr3L 5047863 intron Con - chr3L 5050259 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-639 792 chr3L 5104496 5104512 chr3L 5124630 5124645 7 20134 1.0 0.5 0.8 3.9 20149 chr3L 5104496 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124645 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-639 793 chr3L 5339827 5339846 chr3L 5340071 5340089 5 244 4.5 2.0 3.2 1.2 262 chr3L 5339827 intergenic not near genes chr3L 5339958 intergenic not near genes chr3L 5340089 intergenic not near genes chr3L_5_5335001 chr3L_5335001 RAL-639 794 chr3L 5388201 5388228 chr3L 5388523 5388552 11 324 4.5 0.5 2.5 3.1 351 chr3L 5388201 intergenic not near genes chr3L 5388376 intergenic not near genes chr3L 5388552 intergenic not near genes chr3L_11_5385001 chr3L_5385001 RAL-639 795 chr3L 5537720 5537737 chr3L 5538062 5538079 jockey 8 342 3.5 1.0 2.2 2.5 359 chr3L 5537720 intergenic not near genes chr3L 5537900 intergenic not near genes chr3L 5538079 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-639 796 chr3L 5713987 5714016 chr3L 5714269 5714291 13 281 0.5 6.5 3.5 2.9 304 chr3L 5713987 intron,3` UTR sif +,CG44521 + chr3L 5714139 intron sif + chr3L 5714291 intron sif + chr3L_13_5710001 chr3L_5710001 RAL-639 797 chr3L 5910043 5910061 chr3L 5910282 5910302 pogo 7 241 3.0 5.0 4.0 1.4 259 chr3L 5910043 intron CG13288 + chr3L 5910172 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-639 798 chr3L 5926320 5926349 chr3L 5926509 5926539 BS 8 189 2.0 5.0 3.5 1.8 219 chr3L 5926320 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-639 799 chr3L 6001684 6001712 chr3L 6004384 6004412 jockey 6 2700 3.5 1.0 2.2 1.9 2728 chr3L 6001684 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004412 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-639 800 chr3L 6052657 6052666 chr3L 6052728 6052749 8 82 8.0 6.0 7.0 1.0 92 chr3L 6052657 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-639 801 chr3L 6116699 6116726 chr3L 6116783 6116810 6 84 1.0 3.5 2.2 1.9 111 chr3L 6116699 intron Ets65A + chr3L 6116754 intron Ets65A + chr3L 6116810 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-639 802 chr3L 6151646 6151674 chr3L 6151731 6151759 11 85 1.0 3.0 2.0 3.7 113 chr3L 6151646 3` UTR Lcp65Aa + chr3L 6151702 3` UTR Lcp65Aa + chr3L 6151759 3` UTR Lcp65Aa + chr3L_11_6150001 chr3L_6150001 RAL-639 803 chr3L 6220917 6220946 chr3L 6230069 6230098 roo 9 9150 5.0 4.0 4.5 1.6 9181 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-639 804 chr3L 6233876 6233905 chr3L 6234119 6234148 9 243 2.5 1.0 1.8 3.2 272 chr3L 6233876 exon CG42714 - chr3L 6234012 exon CG42714 - chr3L 6234148 intergenic CG42714 -,CG10226 - chr3L_9_6230001 chr3L_6230001 RAL-639 805 chr3L 6335020 6335040 chr3L 6335490 6335510 297 4 470 1.5 3.0 2.2 1.2 490 chr3L 6335020 intron CG13300 - chr3L 6335265 intron CG13300 - chr3L 6335510 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-639 806 chr3L 6353379 6353407 chr3L 6353459 6353487 7 75 0.0 2.0 1.0 3.5 108 chr3L 6353379 intergenic not near genes chr3L 6353433 intergenic not near genes chr3L 6353487 intergenic not near genes chr3L_7_6350001 chr3L_6350001 RAL-639 807 chr3L 6405658 6405689 chr3L 6432122 6432153 roo 4 26464 1.0 1.0 1.0 2.0 26495 chr3L 6405658 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432153 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-639 808 chr3L 6483858 6483873 chr3L 6483935 6483950 5 77 4.0 2.5 3.2 1.2 92 chr3L 6483858 intron CG42747 + chr3L 6483904 intron CG42747 + chr3L 6483950 intron CG42747 + chr3L_5_6480001 chr3L_6480001 RAL-639 809 chr3L 6515497 6515524 chr3L 6515586 6515612 9 88 2.5 7.0 4.8 1.6 115 chr3L 6515497 intron sfl + chr3L 6515554 intron sfl + chr3L 6515612 intron sfl + chr3L_9_6515001 chr3L_6515001 RAL-639 810 chr3L 6524747 6524769 chr3L 6524842 6524865 5 96 3.0 0.0 1.5 2.0 118 chr3L 6524747 intron sfl + chr3L 6524806 intron sfl + chr3L 6524865 intron sfl + chr3L_5_6520001 chr3L_6520001 RAL-639 811 chr3L 6604290 6604298 chr3L 6604367 6604375 4 77 0.0 4.5 2.2 1.2 85 chr3L 6604290 intron CG8368 + chr3L 6604332 intron CG8368 + chr3L 6604375 intron,3` UTR CG8368 +,zpg - chr3L_4_6600001 chr3L_6600001 RAL-639 812 chr3L 6619678 6619682 chr3L 6619801 6619805 4 123 1.5 1.5 1.5 1.6 127 chr3L 6619678 intergenic not near genes chr3L 6619742 intergenic not near genes chr3L 6619805 intergenic not near genes chr3L_4_6615001 chr3L_6615001 RAL-639 813 chr3L 6646624 6646638 chr3L 6646718 6646733 5 95 3.0 0.0 1.5 2.0 109 chr3L 6646624 intergenic not near genes chr3L 6646678 intergenic not near genes chr3L 6646733 intergenic not near genes chr3L_5_6645001 chr3L_6645001 RAL-639 814 chr3L 6668967 6668998 chr3L 6669048 6669079 6 81 2.0 0.5 1.2 2.7 112 chr3L 6668967 intergenic not near genes chr3L 6669023 intergenic not near genes chr3L 6669079 intergenic not near genes chr3L_6_6665001 chr3L_6665001 RAL-639 815 chr3L 6806329 6806354 chr3L 6806416 6806441 6 85 2.5 1.0 1.8 2.1 112 chr3L 6806329 intergenic not near genes chr3L 6806385 intergenic not near genes chr3L 6806441 intergenic not near genes chr3L_6_6805001 chr3L_6805001 RAL-639 816 chr3L 6844377 6844390 chr3L 6844523 6844536 4 146 1.5 4.5 3.0 1.0 159 chr3L 6844377 intergenic not near genes chr3L 6844456 intergenic not near genes chr3L 6844536 intergenic not near genes chr3L_4_6840001 chr3L_6840001 RAL-639 817 chr3L 6855920 6855952 chr3L 6860703 6860736 Doc 7 4783 1.0 0.0 0.5 4.7 4816 chr3L 6855920 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860736 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-639 818 chr3L 6887526 6887550 chr3L 6895017 6895042 roo 13 7491 2.5 1.5 2.0 4.3 7516 chr3L 6887526 intergenic not near genes chr3L 6891284 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_13_6890001 chr3L_6890001 RAL-639 819 chr3L 6900893 6900905 chr3L 6900965 6900981 5 75 0.0 3.0 1.5 2.0 88 chr3L 6900893 intergenic not near genes chr3L 6900937 intergenic not near genes chr3L 6900981 intergenic not near genes chr3L_5_6900001 chr3L_6900001 RAL-639 820 chr3L 6995810 6995836 chr3L 6996162 6996188 6 352 1.5 3.0 2.2 1.9 378 chr3L 6995810 intergenic not near genes chr3L 6995999 intergenic not near genes chr3L 6996188 intergenic not near genes chr3L_6_6995001 chr3L_6995001 RAL-639 821 chr3L 7033178 7033204 chr3L 7033257 7033284 12 80 3.5 4.0 3.8 2.5 106 chr3L 7033178 intron Mp + chr3L 7033231 intron Mp + chr3L 7033284 intron Mp + chr3L_12_7030001 chr3L_7030001 RAL-639 822 chr3L 7186306 7186334 chr3L 7186590 7186620 5 286 1.5 0.5 1.0 2.5 314 chr3L 7186306 intron Dscam2 - chr3L 7186463 intron Dscam2 - chr3L 7186620 intron Dscam2 - chr3L_5_7185001 chr3L_7185001 RAL-639 823 chr3L 7262498 7262520 chr3L 7262597 7262619 6 99 3.0 0.0 1.5 2.4 121 chr3L 7262498 intron CG14830 - chr3L 7262558 intron CG14830 - chr3L 7262619 intron CG14830 - chr3L_6_7260001 chr3L_7260001 RAL-639 824 chr3L 7276155 7276183 chr3L 7276237 7276264 5 82 2.0 2.0 2.0 1.7 109 chr3L 7276155 intron unc-13-4A - chr3L 7276210 intron unc-13-4A - chr3L 7276264 intron unc-13-4A - chr3L_5_7275001 chr3L_7275001 RAL-639 825 chr3L 7277111 7277138 chr3L 7277213 7277240 6 102 3.5 1.0 2.2 1.9 129 chr3L 7277111 exon unc-13-4A - chr3L 7277176 intron unc-13-4A - chr3L 7277240 intron unc-13-4A - chr3L_6_7275001 chr3L_7275001 RAL-639 826 chr3L 7285452 7285478 chr3L 7285530 7285556 5 78 0.0 2.5 1.2 2.3 104 chr3L 7285452 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285556 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-639 827 chr3L 7377314 7377345 chr3L 7380419 7380450 297 7 3105 2.5 3.5 3.0 1.8 3136 chr3L 7377314 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380450 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-639 828 chr3L 7423073 7423090 chr3L 7423185 7423201 5 112 0.5 0.5 0.5 3.3 128 chr3L 7423073 intergenic not near genes chr3L 7423137 intergenic not near genes chr3L 7423201 intergenic not near genes chr3L_5_7420001 chr3L_7420001 RAL-639 829 chr3L 7498761 7498779 chr3L 7503538 7503556 F-element 9 4777 3.5 2.5 3.0 2.2 4795 chr3L 7498761 5` UTR CG8539 - chr3L 7501158 intergenic not near genes chr3L 7503556 intergenic not near genes chr3L_9_7500001 chr3L_7500001 RAL-639 830 chr3L 7505790 7505791 chr3L 7505871 7505879 5 84 20.5 12.5 16.5 0.3 89 chr3L 7505790 exon CG7548 - chr3L 7505834 exon CG7548 - chr3L 7505879 exon CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-639 831 chr3L 7650549 7650561 chr3L 7650708 7650713 4 157 1.5 0.0 0.8 2.2 164 chr3L 7650549 5` UTR CG32373 + chr3L 7650631 5` UTR CG32373 + chr3L 7650713 5` UTR CG32373 + chr3L_4_7650001 chr3L_7650001 RAL-639 832 chr3L 7691839 7691866 chr3L 7691931 7691958 6 92 1.0 2.5 1.8 2.1 119 chr3L 7691839 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691898 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691958 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_6_7690001 chr3L_7690001 RAL-639 833 chr3L 7793713 7793737 chr3L 7800765 7800788 297 7 7052 5.0 1.5 3.2 1.7 7075 chr3L 7793713 intron CG32369 - chr3L 7797250 intron CG32369 - chr3L 7800788 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-639 834 chr3L 7869667 7869674 chr3L 7869747 7869753 5 80 6.5 1.5 4.0 1.0 86 chr3L 7869667 exon CG32365 + chr3L 7869710 exon CG32365 + chr3L 7869753 exon CG32365 + chr3L_5_7865001 chr3L_7865001 RAL-639 835 chr3L 7903060 7903082 chr3L 7903142 7903164 6 82 1.5 2.5 2.0 2.0 104 chr3L 7903060 intron pbl - chr3L 7903112 intron pbl - chr3L 7903164 intron pbl - chr3L_6_7900001 chr3L_7900001 RAL-639 836 chr3L 7916831 7916856 chr3L 7926002 7926024 roo 5 9170 1.0 2.0 1.5 2.0 9193 chr3L 7916831 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926024 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-639 837 chr3L 7985362 7985396 chr3L 7987689 7987724 NOF 11 2327 0.5 1.5 1.0 5.5 2362 chr3L 7985362 intron nmo + chr3L 7986543 intron nmo + chr3L 7987724 intron nmo + chr3L_11_7985001 chr3L_7985001 RAL-639 838 chr3L 8219557 8219589 chr3L 8219847 8219877 7 290 1.0 3.0 2.0 2.3 320 chr3L 8219557 intergenic not near genes chr3L 8219717 intergenic not near genes chr3L 8219877 intergenic not near genes chr3L_7_8215001 chr3L_8215001 RAL-639 839 chr3L 8452852 8452874 chr3L 8452935 8452956 10 82 6.0 4.0 5.0 1.7 104 chr3L 8452852 intron Gug + chr3L 8452904 intron Gug + chr3L 8452956 intron Gug + chr3L_10_8450001 chr3L_8450001 RAL-639 840 chr3L 8481779 8481800 chr3L 8490935 8490959 roo 5 9157 3.5 4.5 4.0 1.0 9180 chr3L 8481779 intron CG43163 - chr3L 8486369 intron CG43163 - chr3L 8490959 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-639 841 chr3L 8498297 8498330 chr3L 8505764 8505797 blood 5 7467 1.0 2.0 1.5 2.0 7500 chr3L 8498297 intron CG43163 - chr3L 8502047 intron CG43163 - chr3L 8505797 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-639 842 chr3L 8643577 8643606 chr3L 8643653 8643682 9 76 1.0 2.0 1.5 3.6 105 chr3L 8643577 3` UTR Cpr66D + chr3L 8643630 intergenic Cpr66D + chr3L 8643682 intergenic Cpr66D + chr3L_9_8640001 chr3L_8640001 RAL-639 843 chr3L 8791278 8791298 chr3L 8796698 8796708 I-element 7 5418 8.0 0.0 4.0 1.4 5430 chr3L 8791278 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796708 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-639 844 chr3L 8839727 8839750 chr3L 8839807 8839830 4 80 2.5 1.0 1.8 1.4 103 chr3L 8839727 intron dally + chr3L 8839778 intron dally + chr3L 8839830 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-639 845 chr3L 8849207 8849239 chr3L 8849287 8849318 9 79 2.5 0.0 1.2 4.1 111 chr3L 8849207 intron dally + chr3L 8849262 intron dally + chr3L 8849318 intron dally + chr3L_9_8845001 chr3L_8845001 RAL-639 846 chr3L 8934571 8934597 chr3L 8934660 8934688 6 87 2.5 2.5 2.5 1.7 117 chr3L 8934571 exon CG43783 - chr3L 8934630 intron CG43783 - chr3L 8934688 exon CG43783 - chr3L_6_8930001 chr3L_8930001 RAL-639 847 chr3L 8950546 8950583 chr3L 8950638 8950677 5 94 5.0 1.5 3.2 1.2 131 chr3L 8950546 intron,intron CG43783 -,orb2 - chr3L 8950612 intron,intron CG43783 -,orb2 - chr3L 8950677 intron,intron CG43783 -,orb2 - chr3L_5_8950001 chr3L_8950001 RAL-639 848 chr3L 9003946 9003978 chr3L 9004029 9004062 13 84 1.5 4.0 2.8 3.4 116 chr3L 9003946 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_13_9000001 chr3L_9000001 RAL-639 849 chr3L 9024507 9024532 chr3L 9024586 9024610 7 79 2.0 1.5 1.8 2.5 103 chr3L 9024507 intergenic not near genes chr3L 9024558 intergenic not near genes chr3L 9024610 intergenic not near genes chr3L_7_9020001 chr3L_9020001 RAL-639 850 chr3L 9036432 9036469 chr3L 9036511 9036528 9 76 2.5 1.0 1.8 3.2 96 chr3L 9036432 intergenic not near genes chr3L 9036480 intergenic not near genes chr3L 9036528 intergenic not near genes chr3L_9_9035001 chr3L_9035001 RAL-639 851 chr3L 9076927 9076951 chr3L 9084485 9084510 412 7 7559 4.0 5.0 4.5 1.3 7583 chr3L 9076927 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084510 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-639 852 chr3L 9130558 9130581 chr3L 9134319 9134342 412 7 3761 3.5 4.5 4.0 1.4 3784 chr3L 9130558 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-639 853 chr3L 9164695 9164731 chr3L 9166162 9166198 hobo 6 1467 2.0 0.0 1.0 3.0 1503 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-639 854 chr3L 9194157 9194162 chr3L 9194272 9194277 4 115 4.5 0.0 2.2 1.2 120 chr3L 9194157 intergenic not near genes chr3L 9194217 intergenic not near genes chr3L 9194277 intergenic not near genes chr3L_4_9190001 chr3L_9190001 RAL-639 855 chr3L 9219261 9219273 chr3L 9219914 9219945 jockey 8 663 6.0 4.0 5.0 1.3 684 chr3L 9219261 intergenic not near genes chr3L 9219603 intergenic not near genes chr3L 9219945 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-639 856 chr3L 9232876 9232907 chr3L 9232957 9232989 7 81 1.0 0.0 0.5 4.7 113 chr3L 9232876 intergenic not near genes chr3L 9232932 intergenic not near genes chr3L 9232989 intergenic not near genes chr3L_7_9230001 chr3L_9230001 RAL-639 857 chr3L 9270633 9270650 chr3L 9278381 9278401 roo 5 7750 0.0 1.5 0.8 2.8 7768 chr3L 9270633 intron GluRIB + chr3L 9274517 intron GluRIB + chr3L 9278401 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-639 858 chr3L 9318825 9318838 chr3L 9318920 9318934 5 93 4.5 2.0 3.2 1.2 109 chr3L 9318825 intergenic not near genes chr3L 9318880 intergenic not near genes chr3L 9318934 intergenic not near genes chr3L_5_9315001 chr3L_9315001 RAL-639 859 chr3L 9348468 9348703 chr3L 9348969 9349063 7 481 0.0 0.0 0.0 7.0 595 chr3L 9348468 intergenic PGRP-LC + chr3L 9348766 intergenic PGRP-LC + chr3L 9349063 intergenic not near genes chr3L_7_9345001 chr3L_9345001 RAL-639 860 chr3L 9501714 9501730 chr3L 9502200 9502216 roo 4 486 3.5 0.0 1.8 1.4 502 chr3L 9501714 intron path - chr3L 9501965 intron path - chr3L 9502216 intron path - chr3L_4_9500001 chr3L_9500001 RAL-639 861 chr3L 9513443 9513472 chr3L 9513530 9513559 6 86 1.5 0.5 1.0 3.0 116 chr3L 9513443 intergenic CG33702 - chr3L 9513501 intergenic CG33702 - chr3L 9513559 intergenic CG33702 - chr3L_6_9510001 chr3L_9510001 RAL-639 862 chr3L 9571905 9571935 chr3L 9572253 9572283 jockey 7 347 2.5 1.0 1.8 2.5 378 chr3L 9571905 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572283 intron CG42673 + chr3L_7_9570001 chr3L_9570001 RAL-639 863 chr3L 9575910 9575943 chr3L 9580989 9581023 jockey 8 5079 0.5 3.0 1.8 2.9 5113 chr3L 9575910 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-639 864 chr3L 9629745 9629765 chr3L 9629821 9629841 6 76 0.5 2.5 1.5 2.4 96 chr3L 9629745 intron CG8336 + chr3L 9629793 intron CG8336 + chr3L 9629841 intron CG8336 + chr3L_6_9625001 chr3L_9625001 RAL-639 865 chr3L 9676186 9676214 chr3L 9676276 9676304 4 90 0.0 0.0 0.0 4.0 118 chr3L 9676186 intron fry - chr3L 9676245 intron fry - chr3L 9676304 intron fry - chr3L_4_9675001 chr3L_9675001 RAL-639 866 chr3L 9775382 9775392 chr3L 9775740 9775752 7 360 0.0 6.5 3.2 1.7 370 chr3L 9775382 intron CG8177 + chr3L 9775567 intron CG8177 + chr3L 9775752 intron CG8177 + chr3L_7_9775001 chr3L_9775001 RAL-639 867 chr3L 9795023 9795052 chr3L 9795877 9795908 11 856 2.5 5.0 3.8 2.3 885 chr3L 9795023 intron Zasp67 - chr3L 9795466 intron Zasp67 - chr3L 9795908 intron Zasp67 - chr3L_11_9795001 chr3L_9795001 RAL-639 868 chr3L 9824157 9824176 chr3L 9824236 9824255 6 78 3.5 0.0 1.8 2.1 98 chr3L 9824157 intron CG43897 + chr3L 9824206 intron CG43897 + chr3L 9824255 intron CG43897 + chr3L_6_9820001 chr3L_9820001 RAL-639 869 chr3L 9829052 9829080 chr3L 9829133 9829162 5 82 1.5 2.5 2.0 1.7 110 chr3L 9829052 intron CG43897 + chr3L 9829107 intron CG43897 + chr3L 9829162 intron CG43897 + chr3L_5_9825001 chr3L_9825001 RAL-639 870 chr3L 9871191 9871215 chr3L 9871286 9871311 7 96 1.5 2.0 1.8 2.5 120 chr3L 9871191 intergenic not near genes chr3L 9871251 intergenic not near genes chr3L 9871311 intergenic not near genes chr3L_7_9870001 chr3L_9870001 RAL-639 871 chr3L 9918786 9918816 chr3L 9918998 9919028 5 211 3.0 3.0 3.0 1.2 242 chr3L 9918786 intron CG34356 + chr3L 9918907 intron CG34356 + chr3L 9919028 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-639 872 chr3L 9929679 9929688 chr3L 9938459 9938468 roo 4 8779 2.5 1.0 1.8 1.4 8789 chr3L 9929679 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938468 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-639 873 chr3L 10003154 10003178 chr3L 10003251 10003275 4 97 3.5 4.0 3.8 0.8 121 chr3L 10003154 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003275 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-639 874 chr3L 10049558 10049570 chr3L 10049638 10049650 4 80 2.0 4.0 3.0 1.0 92 chr3L 10049558 intron dpr6 + chr3L 10049604 intron dpr6 + chr3L 10049650 intron dpr6 + chr3L_4_10045001 chr3L_10045001 RAL-639 875 chr3L 10148402 10148429 chr3L 10148488 10148513 4 86 2.0 2.0 2.0 1.3 111 chr3L 10148402 3` UTR dpr10 - chr3L 10148458 3` UTR dpr10 - chr3L 10148513 3` UTR dpr10 - chr3L_4_10145001 chr3L_10145001 RAL-639 876 chr3L 10214737 10214822 chr3L 10214824 10214921 7 91 0.0 0.0 0.0 7.0 184 chr3L 10214737 intergenic not near genes chr3L 10214829 intergenic not near genes chr3L 10214921 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-639 877 chr3L 10217692 10217713 chr3L 10217806 10217826 9 113 0.0 3.0 1.5 3.6 134 chr3L 10217692 intergenic not near genes chr3L 10217759 intergenic not near genes chr3L 10217826 intergenic not near genes chr3L_9_10215001 chr3L_10215001 RAL-639 878 chr3L 10219238 10219263 chr3L 10219335 10219360 5 97 1.5 2.0 1.8 1.8 122 chr3L 10219238 exon CG32055 - chr3L 10219299 exon CG32055 - chr3L 10219360 exon CG32055 - chr3L_5_10215001 chr3L_10215001 RAL-639 879 chr3L 10308756 10308774 chr3L 10308833 10308851 5 77 2.0 2.5 2.2 1.6 95 chr3L 10308756 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308851 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-639 880 chr3L 10310349 10310383 chr3L 10310446 10310478 5 96 1.5 1.0 1.2 2.3 129 chr3L 10310349 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310478 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-639 881 chr3L 10386391 10386411 chr3L 10386468 10386484 6 75 5.0 3.5 4.2 1.2 93 chr3L 10386391 intergenic CR45245 + chr3L 10386438 intergenic CR45245 + chr3L 10386484 5` UTR CR45245 + chr3L_6_10385001 chr3L_10385001 RAL-639 882 chr3L 10414939 10414971 chr3L 10417310 10417339 Doc 7 2371 0.5 0.5 0.5 4.7 2400 chr3L 10414939 intergenic CG12362 + chr3L 10416139 intergenic not near genes chr3L 10417339 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-639 883 chr3L 10417572 10417601 chr3L 10417647 10417678 6 77 2.5 2.0 2.2 1.9 106 chr3L 10417572 intergenic not near genes chr3L 10417625 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-639 884 chr3L 10584285 10584293 chr3L 10584372 10584380 5 87 4.5 4.5 4.5 0.9 95 chr3L 10584285 intron A2bp1 + chr3L 10584332 intron A2bp1 + chr3L 10584380 intron A2bp1 + chr3L_5_10580001 chr3L_10580001 RAL-639 885 chr3L 10600456 10600469 chr3L 10600537 10600548 7 81 2.5 2.0 2.2 2.2 92 chr3L 10600456 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600548 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-639 886 chr3L 10613179 10613212 chr3L 10613474 10613506 6 295 0.0 3.5 1.8 2.1 327 chr3L 10613179 intergenic not near genes chr3L 10613342 intergenic not near genes chr3L 10613506 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-639 887 chr3L 10658076 10658099 chr3L 10658153 10658176 5 77 1.5 0.0 0.8 2.8 100 chr3L 10658076 intron CG32066 - chr3L 10658126 intron CG32066 - chr3L 10658176 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-639 888 chr3L 10658180 10658206 chr3L 10658307 10658333 11 126 0.0 4.5 2.2 3.4 153 chr3L 10658180 intron CG32066 - chr3L 10658256 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-639 889 chr3L 10880270 10880284 chr3L 10880408 10880423 5 139 1.5 1.0 1.2 2.3 153 chr3L 10880270 intergenic Blos4 +,CG6409 - chr3L 10880346 intergenic Blos4 +,CG6409 - chr3L 10880423 intergenic Blos4 +,CG6409 - chr3L_5_10880001 chr3L_10880001 RAL-639 890 chr3L 10891881 10891957 chr3L 10891959 10892035 10 78 0.0 0.0 0.0 10.0 154 chr3L 10891881 intron Cpr67Fa2 + chr3L 10891958 intron Cpr67Fa2 + chr3L 10892035 exon Cpr67Fa2 + chr3L_10_10890001 chr3L_10890001 RAL-639 891 chr3L 10957003 10957031 chr3L 10957079 10957107 5 76 1.5 0.5 1.0 2.5 104 chr3L 10957003 intergenic not near genes chr3L 10957055 intergenic not near genes chr3L 10957107 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-639 892 chr3L 10963083 10963097 chr3L 10963161 10963178 6 80 1.0 5.0 3.0 1.5 95 chr3L 10963083 intergenic not near genes chr3L 10963130 intergenic not near genes chr3L 10963178 intergenic not near genes chr3L_6_10960001 chr3L_10960001 RAL-639 893 chr3L 11087059 11087089 chr3L 11088847 11088863 S-element 4 1784 0.5 1.5 1.0 2.0 1804 chr3L 11087059 intron JIL-1 - chr3L 11087961 intron JIL-1 - chr3L 11088863 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-639 894 chr3L 11131808 11131814 chr3L 11132072 11132077 4 264 1.5 0.5 1.0 2.0 269 chr3L 11131808 intron CG42575 + chr3L 11131942 intron,3` UTR CG42575 +,CG32074 - chr3L 11132077 intron,exon CG42575 +,CG32074 - chr3L_4_11130001 chr3L_11130001 RAL-639 895 chr3L 11264465 11264496 chr3L 11271417 11271448 17.6 6 6950 1.0 2.0 1.5 2.4 6983 chr3L 11264465 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271448 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-639 896 chr3L 11290629 11290654 chr3L 11290952 11290977 6 322 1.5 2.0 1.8 2.1 348 chr3L 11290629 intron CG6175 - chr3L 11290803 intron CG6175 - chr3L 11290977 intron CG6175 - chr3L_6_11290001 chr3L_11290001 RAL-639 897 chr3L 11305799 11305807 chr3L 22908066 22908066 4 11602262 3.0 15.5 9.2 0.4 11602267 chr3L 11305799 intergenic not near genes chr3L 17106932 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_4_17105001 chr3L_17105001 RAL-639 898 chr3L 11329701 11329726 chr3L 11332906 11332915 jockey 6 3202 4.0 1.0 2.5 1.7 3214 chr3L 11329701 intergenic not near genes chr3L 11331308 intergenic not near genes chr3L 11332915 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-639 899 chr3L 11353139 11353160 chr3L 11353222 11353243 7 83 2.5 2.0 2.2 2.2 104 chr3L 11353139 intergenic not near genes chr3L 11353191 intergenic not near genes chr3L 11353243 intergenic not near genes chr3L_7_11350001 chr3L_11350001 RAL-639 900 chr3L 11422474 11422498 chr3L 11422562 11422587 4 88 2.0 1.5 1.8 1.4 113 chr3L 11422474 intergenic not near genes chr3L 11422530 intergenic not near genes chr3L 11422587 intergenic not near genes chr3L_4_11420001 chr3L_11420001 RAL-639 901 chr3L 11433784 11433808 chr3L 11433864 11433888 4 80 3.0 1.0 2.0 1.3 104 chr3L 11433784 intergenic not near genes chr3L 11433836 intergenic not near genes chr3L 11433888 intergenic not near genes chr3L_4_11430001 chr3L_11430001 RAL-639 902 chr3L 11493157 11493188 chr3L 11493239 11493270 4 82 0.0 2.0 1.0 2.0 113 chr3L 11493157 intron chrb + chr3L 11493214 intron chrb + chr3L 11493270 intron chrb + chr3L_4_11490001 chr3L_11490001 RAL-639 903 chr3L 11560789 11560815 chr3L 11560866 11560893 9 77 2.0 1.5 1.8 3.2 104 chr3L 11560789 intron Mob2 - chr3L 11560841 intron Mob2 - chr3L 11560893 intron Mob2 - chr3L_9_11560001 chr3L_11560001 RAL-639 904 chr3L 11564789 11564808 chr3L 11572413 11572432 412 5 7624 2.0 3.5 2.8 1.3 7643 chr3L 11564789 exon CG33267 + chr3L 11568610 intron CG33267 + chr3L 11572432 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-639 905 chr3L 11587920 11587953 chr3L 11587996 11588029 4 76 2.0 3.5 2.8 1.1 109 chr3L 11587920 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588029 intergenic rt - chr3L_4_11585001 chr3L_11585001 RAL-639 906 chr3L 11588731 11588756 chr3L 11588887 11588912 10 156 1.0 2.5 1.8 3.6 181 chr3L 11588731 intergenic not near genes chr3L 11588822 intergenic not near genes chr3L 11588912 intergenic not near genes chr3L_10_11585001 chr3L_11585001 RAL-639 907 chr3L 11678101 11678111 chr3L 11678188 11678198 7 87 3.5 1.5 2.5 2.0 97 chr3L 11678101 intron CG32085 - chr3L 11678150 intron CG32085 - chr3L 11678198 intron CG32085 - chr3L_7_11675001 chr3L_11675001 RAL-639 908 chr3L 11723084 11723114 chr3L 11727879 11727909 Doc 8 4794 2.5 4.0 3.2 1.9 4825 chr3L 11723084 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-639 909 chr3L 11729678 11729705 chr3L 11729754 11729780 11 74 1.5 4.0 2.8 2.9 102 chr3L 11729678 exon CG32088 + chr3L 11729729 intron CG32088 + chr3L 11729780 exon CG32088 + chr3L_11_11725001 chr3L_11725001 RAL-639 910 chr3L 11744014 11744038 chr3L 11744122 11744146 15 108 3.5 0.0 1.8 5.4 132 chr3L 11744014 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_15_11740001 chr3L_11740001 RAL-639 911 chr3L 11943495 11943519 chr3L 11943596 11943620 4 100 1.0 2.0 1.5 1.6 125 chr3L 11943495 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943620 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-639 912 chr3L 12013915 12013934 chr3L 12014004 12014025 7 90 2.5 1.0 1.8 2.5 110 chr3L 12013915 intron rols - chr3L 12013970 intron rols - chr3L 12014025 intron rols - chr3L_7_12010001 chr3L_12010001 RAL-639 913 chr3L 12075427 12075448 chr3L 12075516 12075537 4 89 5.0 0.0 2.5 1.1 110 chr3L 12075427 intron Sema-5c - chr3L 12075482 intron Sema-5c - chr3L 12075537 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-639 914 chr3L 12082209 12082224 chr3L 12082438 12082453 6 229 3.0 1.5 2.2 1.9 244 chr3L 12082209 intergenic Sema-5c - chr3L 12082331 intergenic not near genes chr3L 12082453 intergenic not near genes chr3L_6_12080001 chr3L_12080001 RAL-639 915 chr3L 12119760 12119783 chr3L 12119857 12119880 6 97 1.5 1.5 1.5 2.4 120 chr3L 12119760 3` UTR ssp + chr3L 12119820 intergenic ssp +,CG11560 + chr3L 12119880 intergenic ssp +,CG11560 + chr3L_6_12115001 chr3L_12115001 RAL-639 916 chr3L 12158778 12158808 chr3L 12160257 12160279 13 1471 46.5 36.0 41.2 0.3 1501 chr3L 12158778 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160279 intron CG9760 - chr3L_13_12155001 chr3L_12155001 RAL-639 917 chr3L 12156433 12156461 chr3L 12160318 12160347 4 3885 11.5 18.5 15.0 0.2 3914 chr3L 12156433 3` UTR Nrx-IV + chr3L 12158390 intron CG9760 - chr3L 12160347 intron CG9760 - chr3L_4_12155001 chr3L_12155001 RAL-639 918 chr3L 12304090 12304113 chr3L 12304166 12304189 7 73 4.5 5.0 4.8 1.2 99 chr3L 12304090 intergenic not near genes chr3L 12304140 intergenic not near genes chr3L 12304189 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-639 919 chr3L 12312488 12312497 chr3L 12312566 12312575 5 78 3.0 0.0 1.5 2.0 87 chr3L 12312488 intergenic not near genes chr3L 12312532 intergenic not near genes chr3L 12312575 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-639 920 chr3L 12358997 12359012 chr3L 12359579 12359593 9 582 1.5 2.0 1.8 3.2 596 chr3L 12358997 intergenic not near genes chr3L 12359295 intergenic not near genes chr3L 12359593 intergenic not near genes chr3L_9_12355001 chr3L_12355001 RAL-639 921 chr3L 12369534 12369565 chr3L 12369624 12369655 6 90 1.0 2.0 1.5 2.4 121 chr3L 12369534 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369655 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-639 922 chr3L 12406520 12406528 chr3L 12406751 12406759 5 231 3.5 4.0 3.8 1.0 239 chr3L 12406520 intron CG32103 - chr3L 12406640 intron CG32103 - chr3L 12406759 intron CG32103 - chr3L_5_12405001 chr3L_12405001 RAL-639 923 chr3L 12446271 12446298 chr3L 12446349 12446376 6 77 4.0 3.0 3.5 1.3 105 chr3L 12446271 intergenic not near genes chr3L 12446324 intergenic not near genes chr3L 12446376 intergenic not near genes chr3L_6_12445001 chr3L_12445001 RAL-639 924 chr3L 12460317 12460329 chr3L 12460394 12460406 4 77 0.0 2.5 1.2 1.8 89 chr3L 12460317 intergenic not near genes chr3L 12460362 intergenic not near genes chr3L 12460406 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-639 925 chr3L 12540529 12540539 chr3L 12540607 12540617 4 78 1.5 1.0 1.2 1.8 88 chr3L 12540529 intron sowah - chr3L 12540573 intron sowah - chr3L 12540617 intron sowah - chr3L_4_12540001 chr3L_12540001 RAL-639 926 chr3L 12626155 12626166 chr3L 12626264 12626275 6 109 2.0 0.5 1.2 2.7 120 chr3L 12626155 intergenic not near genes chr3L 12626215 intergenic not near genes chr3L 12626275 intergenic not near genes chr3L_6_12625001 chr3L_12625001 RAL-639 927 chr3L 12699778 12699792 chr3L 12699959 12699973 4 181 3.0 3.0 3.0 1.0 195 chr3L 12699778 intron mirr + chr3L 12699876 intron mirr + chr3L 12699973 intron mirr + chr3L_4_12695001 chr3L_12695001 RAL-639 928 chr3L 12788420 12788442 chr3L 12788539 12788562 4 120 1.5 1.5 1.5 1.6 142 chr3L 12788420 intron Atg1 - chr3L 12788491 intron Atg1 - chr3L 12788562 exon Atg1 - chr3L_4_12785001 chr3L_12785001 RAL-639 929 chr3L 12801990 12802011 chr3L 12802064 12802082 7 74 0.0 4.5 2.2 2.2 92 chr3L 12801990 intron Atg1 - chr3L 12802036 intron Atg1 - chr3L 12802082 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-639 930 chr3L 12874930 12874952 chr3L 12877222 12877244 jockey 5 2292 1.5 1.5 1.5 2.0 2314 chr3L 12874930 intergenic not near genes chr3L 12876087 intergenic not near genes chr3L 12877244 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-639 931 chr3L 12894803 12894821 chr3L 12894881 12894899 4 78 5.0 8.0 6.5 0.5 96 chr3L 12894803 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-639 932 chr3L 12919274 12919305 chr3L 12924747 12924777 Rt1c 7 5473 3.0 1.0 2.0 2.3 5503 chr3L 12919274 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-639 933 chr3L 12941979 12942009 chr3L 12942086 12942116 6 107 1.0 2.0 1.5 2.4 137 chr3L 12941979 intergenic not near genes chr3L 12942048 intergenic not near genes chr3L 12942116 intergenic not near genes chr3L_6_12940001 chr3L_12940001 RAL-639 934 chr3L 12955131 12955160 chr3L 12955207 12955234 5 76 2.0 2.0 2.0 1.7 103 chr3L 12955131 intergenic CG10752 - chr3L 12955182 intergenic not near genes chr3L 12955234 intergenic not near genes chr3L_5_12955001 chr3L_12955001 RAL-639 935 chr3L 12955430 12955462 chr3L 12955521 12955551 15 89 1.0 4.5 2.8 3.9 121 chr3L 12955430 intergenic not near genes chr3L 12955490 intergenic not near genes chr3L 12955551 intergenic not near genes chr3L_15_12955001 chr3L_12955001 RAL-639 936 chr3L 12957789 12957817 chr3L 12962271 12962299 copia 7 4482 3.5 4.0 3.8 1.5 4510 chr3L 12957789 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_7_12960001 chr3L_12960001 RAL-639 937 chr3L 13015726 13015735 chr3L 13015808 13015817 4 82 1.0 2.0 1.5 1.6 91 chr3L 13015726 intergenic CG11267 +,MICAL-like - chr3L 13015772 intergenic CG11267 +,MICAL-like - chr3L 13015817 intergenic CG11267 +,MICAL-like - chr3L_4_13015001 chr3L_13015001 RAL-639 938 chr3L 13047745 13047773 chr3L 13047825 13047852 7 80 0.5 3.5 2.0 2.3 107 chr3L 13047745 3` UTR CG11279 + chr3L 13047798 3` UTR CG11279 + chr3L 13047852 3` UTR CG11279 + chr3L_7_13045001 chr3L_13045001 RAL-639 939 chr3L 13090881 13090906 chr3L 13090991 13091017 7 111 2.5 3.5 3.0 1.8 136 chr3L 13090881 intergenic not near genes chr3L 13090949 intergenic not near genes chr3L 13091017 intergenic not near genes chr3L_7_13090001 chr3L_13090001 RAL-639 940 chr3L 13182450 13182463 chr3L 13182528 13182541 4 77 2.5 2.0 2.2 1.2 91 chr3L 13182450 intergenic not near genes chr3L 13182496 intergenic not near genes chr3L 13182541 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-639 941 chr3L 13206236 13206264 chr3L 13206318 13206345 7 81 2.0 2.5 2.2 2.2 109 chr3L 13206236 intergenic not near genes chr3L 13206290 intergenic not near genes chr3L 13206345 intergenic not near genes chr3L_7_13205001 chr3L_13205001 RAL-639 942 chr3L 13265183 13265216 chr3L 13265261 13265294 9 78 1.5 2.5 2.0 3.0 111 chr3L 13265183 5` UTR caps + chr3L 13265238 5` UTR caps + chr3L 13265294 5` UTR caps + chr3L_9_13265001 chr3L_13265001 RAL-639 943 chr3L 13269607 13269640 chr3L 13269685 13269713 4 72 2.5 3.0 2.8 1.1 106 chr3L 13269607 intron caps + chr3L 13269660 intron caps + chr3L 13269713 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-639 944 chr3L 13311044 13311053 chr3L 13311114 13311134 4 78 1.5 1.5 1.5 1.6 90 chr3L 13311044 intergenic not near genes chr3L 13311089 intergenic not near genes chr3L 13311134 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-639 945 chr3L 13338287 13338318 chr3L 13338383 13338414 7 95 1.0 3.0 2.0 2.3 127 chr3L 13338287 intergenic not near genes chr3L 13338350 intergenic not near genes chr3L 13338414 intergenic not near genes chr3L_7_13335001 chr3L_13335001 RAL-639 946 chr3L 13361964 13361988 chr3L 13362057 13362082 9 93 4.0 1.5 2.8 2.4 118 chr3L 13361964 intergenic not near genes chr3L 13362023 intergenic not near genes chr3L 13362082 intergenic not near genes chr3L_9_13360001 chr3L_13360001 RAL-639 947 chr3L 13374250 13374275 chr3L 13374339 13374364 6 89 1.5 4.5 3.0 1.5 114 chr3L 13374250 intergenic not near genes chr3L 13374307 intergenic not near genes chr3L 13374364 intergenic not near genes chr3L_6_13370001 chr3L_13370001 RAL-639 948 chr3L 13452673 13452682 chr3L 13452759 13452770 5 88 2.0 2.5 2.2 1.6 97 chr3L 13452673 intron CG10738 + chr3L 13452722 intron CG10738 + chr3L 13452770 intron CG10738 + chr3L_5_13450001 chr3L_13450001 RAL-639 949 chr3L 13455755 13455781 chr3L 13455910 13455936 7 154 1.5 2.5 2.0 2.3 181 chr3L 13455755 intron CG10738 + chr3L 13455846 intron CG10738 + chr3L 13455936 intron CG10738 + chr3L_7_13455001 chr3L_13455001 RAL-639 950 chr3L 13525158 13525190 chr3L 13532954 13532986 roo 12 7795 5.0 3.5 4.2 2.3 7828 chr3L 13525158 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-639 951 chr3L 13596035 13596060 chr3L 13596150 13596175 4 115 3.0 0.0 1.5 1.6 140 chr3L 13596035 intron bru-3 - chr3L 13596105 intron bru-3 - chr3L 13596175 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-639 952 chr3L 13663268 13663293 chr3L 13663347 13663372 6 79 3.0 1.5 2.2 1.9 104 chr3L 13663268 intron bru-3 - chr3L 13663320 intron bru-3 - chr3L 13663372 intron bru-3 - chr3L_6_13660001 chr3L_13660001 RAL-639 953 chr3L 13725864 13725881 chr3L 13725948 13725977 11 94 3.5 2.5 3.0 2.8 113 chr3L 13725864 intron bru-3 - chr3L 13725920 intron bru-3 - chr3L 13725977 intron bru-3 - chr3L_11_13725001 chr3L_13725001 RAL-639 954 chr3L 13837267 13837297 chr3L 13837344 13837374 7 77 0.0 0.0 0.0 7.0 107 chr3L 13837267 intergenic CG43184 + chr3L 13837320 intergenic CG43184 + chr3L 13837374 intergenic CG43184 + chr3L_7_13835001 chr3L_13835001 RAL-639 955 chr3L 14107260 14107290 chr3L 14107337 14107366 7 77 1.5 1.0 1.2 3.2 106 chr3L 14107260 intron Sox21a - chr3L 14107313 intron Sox21a - chr3L 14107366 intron Sox21a - chr3L_7_14105001 chr3L_14105001 RAL-639 956 chr3L 14245573 14245594 chr3L 14245665 14245687 1360 9 93 2.5 2.0 2.2 2.8 114 chr3L 14245573 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245687 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-639 957 chr3L 14267368 14267390 chr3L 14271807 14271830 F-element 6 4440 3.5 2.0 2.8 1.6 4462 chr3L 14267368 intergenic not near genes chr3L 14269599 intergenic not near genes chr3L 14271830 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-639 958 chr3L 14282586 14282605 chr3L 14282666 14282685 7 80 5.0 2.5 3.8 1.5 99 chr3L 14282586 intron fz + chr3L 14282636 intron fz + chr3L 14282685 intron fz + chr3L_7_14280001 chr3L_14280001 RAL-639 959 chr3L 14286662 14286676 chr3L 14286741 14286754 5 78 3.0 2.0 2.5 1.4 92 chr3L 14286662 intron fz + chr3L 14286708 intron fz + chr3L 14286754 intron fz + chr3L_5_14285001 chr3L_14285001 RAL-639 960 chr3L 14295993 14296014 chr3L 14296476 14296499 roo 7 485 2.0 6.5 4.2 1.3 506 chr3L 14295993 intron fz + chr3L 14296246 intron fz + chr3L 14296499 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-639 961 chr3L 14411864 14411899 chr3L 14411943 14411977 9 79 0.5 2.0 1.2 4.1 113 chr3L 14411864 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411977 intron CG3919 + chr3L_9_14410001 chr3L_14410001 RAL-639 962 chr3L 14468452 14468468 chr3L 14473658 14473674 copia 4 5206 3.0 4.5 3.8 0.8 5222 chr3L 14468452 intron bbg - chr3L 14471063 intron bbg - chr3L 14473674 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-639 963 chr3L 14546635 14546810 chr3L 14546716 14546891 4 81 0.0 3.0 1.5 1.6 256 chr3L 14546635 intron CG9238 - chr3L 14546763 intron CG9238 - chr3L 14546891 intron CG9238 - chr3L_4_14545001 chr3L_14545001 RAL-639 964 chr3L 14585722 14585739 chr3L 14585806 14585820 5 83 2.0 1.0 1.5 2.0 98 chr3L 14585722 intron HGTX - chr3L 14585771 intron HGTX - chr3L 14585820 intron HGTX - chr3L_5_14585001 chr3L_14585001 RAL-639 965 chr3L 14721183 14721209 chr3L 14723026 14723052 Rt1c 4 1839 3.5 2.5 3.0 1.0 1869 chr3L 14721183 intron ome + chr3L 14722118 intron ome + chr3L 14723052 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-639 966 chr3L 14892457 14892480 chr3L 14892534 14892557 7 77 1.5 3.5 2.5 2.0 100 chr3L 14892457 intergenic not near genes chr3L 14892507 intergenic not near genes chr3L 14892557 intergenic not near genes chr3L_7_14890001 chr3L_14890001 RAL-639 967 chr3L 14913906 14913927 chr3L 14913983 14914002 8 77 1.5 0.5 1.0 4.0 96 chr3L 14913906 intron DCX-EMAP + chr3L 14913954 intron DCX-EMAP + chr3L 14914002 intron DCX-EMAP + chr3L_8_14910001 chr3L_14910001 RAL-639 968 chr3L 14917661 14917686 chr3L 14917744 14917769 8 83 4.5 4.0 4.2 1.5 108 chr3L 14917661 intron DCX-EMAP + chr3L 14917715 intron DCX-EMAP + chr3L 14917769 intron DCX-EMAP + chr3L_8_14915001 chr3L_14915001 RAL-639 969 chr3L 14922106 14922134 chr3L 14922211 14922226 6 104 2.0 0.0 1.0 3.0 120 chr3L 14922106 intron DCX-EMAP + chr3L 14922166 intron DCX-EMAP + chr3L 14922226 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-639 970 chr3L 15085056 15085067 chr3L 15086221 15086233 1360 4 1166 4.0 3.0 3.5 0.9 1177 chr3L 15085056 intron cp309 - chr3L 15085644 intron cp309 - chr3L 15086233 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-639 971 chr3L 15166980 15166994 chr3L 15167059 15167082 4 85 4.0 2.5 3.2 1.0 102 chr3L 15166980 intergenic not near genes chr3L 15167031 intergenic not near genes chr3L 15167082 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-639 972 chr3L 15209069 15209090 chr3L 15209155 15209176 6 86 3.5 1.0 2.2 1.9 107 chr3L 15209069 intergenic CG6888 + chr3L 15209122 intergenic not near genes chr3L 15209176 intergenic not near genes chr3L_6_15205001 chr3L_15205001 RAL-639 973 chr3L 15262801 15262832 chr3L 15262879 15262887 8 75 2.5 2.5 2.5 2.3 86 chr3L 15262801 intergenic not near genes chr3L 15262844 intergenic not near genes chr3L 15262887 intergenic not near genes chr3L_8_15260001 chr3L_15260001 RAL-639 974 chr3L 15466044 15466126 chr3L 15466126 15466222 5 90 0.0 0.0 0.0 5.0 178 chr3L 15466044 intergenic not near genes chr3L 15466133 intergenic not near genes chr3L 15466222 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-639 975 chr3L 15541879 15541907 chr3L 15541977 15542005 4 98 0.5 2.0 1.2 1.8 126 chr3L 15541879 intron CrebA + chr3L 15541942 intron CrebA + chr3L 15542005 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-639 976 chr3L 15641792 15641812 chr3L 15641877 15641897 4 85 0.0 4.0 2.0 1.3 105 chr3L 15641792 intron comm3 - chr3L 15641844 intron comm3 - chr3L 15641897 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-639 977 chr3L 15853243 15853279 chr3L 15853352 15853384 7 108 2.0 2.0 2.0 2.3 141 chr3L 15853243 intron pHCl - chr3L 15853314 intron pHCl - chr3L 15853384 intron pHCl - chr3L_7_15850001 chr3L_15850001 RAL-639 978 chr3L 15899235 15899257 chr3L 15899788 15899799 jockey 6 560 2.0 6.5 4.2 1.2 564 chr3L 15899235 intergenic pHCl - chr3L 15899517 intergenic pHCl - chr3L 15899799 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-639 979 chr3L 15981676 15981683 chr3L 15981762 15981767 4 85 2.5 2.0 2.2 1.2 91 chr3L 15981676 intron,3` UTR brm -,CG17027 + chr3L 15981722 intron,3` UTR brm -,CG17027 + chr3L 15981767 intron,3` UTR brm -,CG17027 + chr3L_4_15980001 chr3L_15980001 RAL-639 980 chr3L 16114054 16114089 chr3L 16114352 16114387 16 293 3.5 7.0 5.2 2.6 333 chr3L 16114054 5` UTR Taf4 + chr3L 16114220 intron Taf4 + chr3L 16114387 5` UTR Taf4 + chr3L_16_16110001 chr3L_16110001 RAL-639 981 chr3L 16162597 16162628 chr3L 16162681 16162712 5 84 3.0 1.0 2.0 1.7 115 chr3L 16162597 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162712 intron CG5151 - chr3L_5_16160001 chr3L_16160001 RAL-639 982 chr3L 16184108 16184130 chr3L 16188927 16188948 X-element 7 4819 4.0 3.0 3.5 1.6 4840 chr3L 16184108 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188948 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-639 983 chr3L 16218802 16218836 chr3L 16219011 16219046 6 210 1.5 1.5 1.5 2.4 244 chr3L 16218802 intergenic not near genes chr3L 16218924 intergenic not near genes chr3L 16219046 intergenic not near genes chr3L_6_16215001 chr3L_16215001 RAL-639 984 chr3L 16258385 16258413 chr3L 16258471 16258499 5 86 3.0 1.0 2.0 1.7 114 chr3L 16258385 intergenic not near genes chr3L 16258442 intergenic not near genes chr3L 16258499 intergenic not near genes chr3L_5_16255001 chr3L_16255001 RAL-639 985 chr3L 16312761 16312787 chr3L 16312840 16312865 6 79 0.5 1.5 1.0 3.0 104 chr3L 16312761 intergenic not near genes chr3L 16312813 intergenic not near genes chr3L 16312865 intergenic not near genes chr3L_6_16310001 chr3L_16310001 RAL-639 986 chr3L 16364347 16364375 chr3L 16364437 16364463 9 90 1.0 2.0 1.5 3.6 116 chr3L 16364347 intergenic not near genes chr3L 16364405 intergenic Cpr72Eb + chr3L 16364463 intergenic Cpr72Eb + chr3L_9_16360001 chr3L_16360001 RAL-639 987 chr3L 16437068 16437077 chr3L 16437147 16437155 5 79 6.5 0.5 3.5 1.1 87 chr3L 16437068 intron,intron CG33158 +,dsx-c73A - chr3L 16437112 intron,intron CG33158 +,dsx-c73A - chr3L 16437155 intron,intron CG33158 +,dsx-c73A - chr3L_5_16435001 chr3L_16435001 RAL-639 988 chr3L 16443858 16443874 chr3L 16446198 16446214 Doc 4 2340 2.0 2.5 2.2 1.2 2356 chr3L 16443858 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446214 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-639 989 chr3L 16493976 16494010 chr3L 16494493 16494527 jockey 14 516 2.0 4.5 3.2 3.3 551 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_14_16490001 chr3L_16490001 RAL-639 990 chr3L 16503628 16503655 chr3L 16503702 16503732 4 76 3.0 0.5 1.8 1.4 104 chr3L 16503628 intron CG43373 - chr3L 16503680 intron CG43373 - chr3L 16503732 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-639 991 chr3L 16610685 16610717 chr3L 16610770 16610802 6 85 0.5 2.0 1.2 2.7 117 chr3L 16610685 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610802 exon Su(P) - chr3L_6_16610001 chr3L_16610001 RAL-639 992 chr3L 16616512 16616541 chr3L 16621839 16621869 297 6 5327 2.0 1.0 1.5 2.4 5357 chr3L 16616512 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621869 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-639 993 chr3L 16633519 16633546 chr3L 16633963 16633990 8 443 0.0 2.0 1.0 4.0 471 chr3L 16633519 intron Abl - chr3L 16633754 intron Abl - chr3L 16633990 intron Abl - chr3L_8_16630001 chr3L_16630001 RAL-639 994 chr3L 16817888 16817907 chr3L 16818028 16818047 5 140 1.0 6.0 3.5 1.1 159 chr3L 16817888 intron,intron nudC +,CG13024 - chr3L 16817968 intron,intron nudC +,CG13024 - chr3L 16818047 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-639 995 chr3L 16824006 16824026 chr3L 16824093 16824113 5 86 0.0 1.0 0.5 3.3 107 chr3L 16824006 intron CG13024 - chr3L 16824060 intron CG13024 - chr3L 16824113 intron CG13024 - chr3L_5_16820001 chr3L_16820001 RAL-639 996 chr3L 16826209 16826226 chr3L 16826488 16826507 5 281 2.0 2.0 2.0 1.7 298 chr3L 16826209 intron CG13024 - chr3L 16826358 intron CG13024 - chr3L 16826507 intron CG13024 - chr3L_5_16825001 chr3L_16825001 RAL-639 997 chr3L 16836911 16836941 chr3L 16837009 16837039 12 97 1.5 3.5 2.5 3.4 128 chr3L 16836911 intergenic not near genes chr3L 16836975 intergenic not near genes chr3L 16837039 intergenic not near genes chr3L_12_16835001 chr3L_16835001 RAL-639 998 chr3L 16861037 16861049 chr3L 16861129 16861151 7 100 3.0 3.5 3.2 1.7 114 chr3L 16861037 intron,exon Rh4 -,CG13029 + chr3L 16861094 intron,intron Rh4 -,CG13029 + chr3L 16861151 intron,intron Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-639 999 chr3L 16873336 16873359 chr3L 16873441 16873464 5 105 4.5 1.5 3.0 1.2 128 chr3L 16873336 intron Lmpt + chr3L 16873400 intron Lmpt + chr3L 16873464 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-639 1000 chr3L 16912932 16912945 chr3L 16913008 16913023 4 78 0.0 2.0 1.0 2.0 91 chr3L 16912932 intron Lmpt + chr3L 16912978 intron Lmpt + chr3L 16913023 intron Lmpt + chr3L_4_16910001 chr3L_16910001 RAL-639 1001 chr3L 16941412 16941424 chr3L 16941512 16941525 8 101 4.5 0.0 2.2 2.5 113 chr3L 16941412 intron Cpr73D - chr3L 16941468 intron Cpr73D - chr3L 16941525 intron Cpr73D - chr3L_8_16940001 chr3L_16940001 RAL-639 1002 chr3L 16945725 16945755 chr3L 16954878 16954908 roo 9 9153 5.0 0.5 2.8 2.4 9183 chr3L 16945725 exon Obp73a + chr3L 16950316 intergenic not near genes chr3L 16954908 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-639 1003 chr3L 17027168 17027185 chr3L 17027260 17027277 5 92 0.0 2.0 1.0 2.5 109 chr3L 17027168 intergenic Fit2 +,CG7730 + chr3L 17027222 intergenic Fit2 +,CG7730 + chr3L 17027277 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-639 1004 chr3L 17052591 17052623 chr3L 17052694 17052726 15 102 3.5 2.5 3.0 3.8 135 chr3L 17052591 intron rogdi + chr3L 17052658 intron rogdi + chr3L 17052726 exon rogdi + chr3L_15_17050001 chr3L_17050001 RAL-639 1005 chr3L 17085004 17085030 chr3L 17094153 17094176 roo 5 9148 2.0 3.0 2.5 1.4 9172 chr3L 17085004 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094176 intron Rbp6 - chr3L_5_17085001 chr3L_17085001 RAL-639 1006 chr3L 17120653 17120684 chr3L 17120728 17120760 10 76 4.0 1.5 2.8 2.6 107 chr3L 17120653 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120760 intron Rbp6 - chr3L_10_17120001 chr3L_17120001 RAL-639 1007 chr3L 17331064 17331080 chr3L 17331154 17331170 4 90 3.5 2.5 3.0 1.0 106 chr3L 17331064 intergenic not near genes chr3L 17331117 intergenic not near genes chr3L 17331170 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-639 1008 chr3L 17395947 17395974 chr3L 17396047 17396074 4 100 2.0 1.5 1.8 1.4 127 chr3L 17395947 intergenic blot - chr3L 17396010 intergenic blot - chr3L 17396074 3` UTR blot - chr3L_4_17395001 chr3L_17395001 RAL-639 1009 chr3L 17488063 17488093 chr3L 17488145 17488174 9 82 0.5 1.0 0.8 5.0 111 chr3L 17488063 intron Oatp74D + chr3L 17488118 5` UTR Oatp74D + chr3L 17488174 5` UTR Oatp74D + chr3L_9_17485001 chr3L_17485001 RAL-639 1010 chr3L 17510749 17510764 chr3L 17510833 17510848 9 84 2.0 4.5 3.2 2.1 99 chr3L 17510749 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-639 1011 chr3L 17516985 17517013 chr3L 17524542 17524571 412 7 7558 1.5 1.0 1.2 3.2 7586 chr3L 17516985 intron CG7564 + chr3L 17520778 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-639 1012 chr3L 17586978 17586997 chr3L 17587112 17587130 6 134 2.0 4.0 3.0 1.5 152 chr3L 17586978 intron Eip74EF - chr3L 17587054 intron Eip74EF - chr3L 17587130 intron Eip74EF - chr3L_6_17585001 chr3L_17585001 RAL-639 1013 chr3L 17587871 17587901 chr3L 17588075 17588105 7 204 2.5 1.5 2.0 2.3 234 chr3L 17587871 intron Eip74EF - chr3L 17587988 intron Eip74EF - chr3L 17588105 intron Eip74EF - chr3L_7_17585001 chr3L_17585001 RAL-639 1014 chr3L 17592794 17592814 chr3L 17592885 17592905 4 91 1.0 1.5 1.2 1.8 111 chr3L 17592794 intron Eip74EF - chr3L 17592850 intron Eip74EF - chr3L 17592905 intron Eip74EF - chr3L_4_17590001 chr3L_17590001 RAL-639 1015 chr3L 17634930 17634951 chr3L 17635019 17635039 11 88 6.0 1.5 3.8 2.3 109 chr3L 17634930 intron CG7497 + chr3L 17634984 intron CG7497 + chr3L 17635039 intron CG7497 + chr3L_11_17630001 chr3L_17630001 RAL-639 1016 chr3L 17656528 17656550 chr3L 17657686 17657711 6 1160 2.5 4.0 3.2 1.4 1183 chr3L 17656528 intergenic not near genes chr3L 17657120 intergenic not near genes chr3L 17657711 intergenic not near genes chr3L_6_17655001 chr3L_17655001 RAL-639 1017 chr3L 17730855 17730879 chr3L 17738185 17738209 mdg1 6 7330 1.5 0.5 1.0 3.0 7354 chr3L 17730855 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738209 intron Ccn + chr3L_6_17730001 chr3L_17730001 RAL-639 1018 chr3L 17790603 17790636 chr3L 17790868 17790901 5 265 2.0 1.5 1.8 1.8 298 chr3L 17790603 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790901 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-639 1019 chr3L 17834325 17834355 chr3L 17834489 17834519 4 164 0.5 1.5 1.0 2.0 194 chr3L 17834325 intron Grd + chr3L 17834422 intron Grd + chr3L 17834519 intron Grd + chr3L_4_17830001 chr3L_17830001 RAL-639 1020 chr3L 17837624 17837654 chr3L 17837712 17837741 17 88 2.0 2.0 2.0 5.7 117 chr3L 17837624 exon Grd + chr3L 17837682 intron Grd + chr3L 17837741 intron Grd + chr3L_17_17835001 chr3L_17835001 RAL-639 1021 chr3L 17957062 17957086 chr3L 17957152 17957176 14 88 2.0 3.0 2.5 4.0 114 chr3L 17957062 intron Eip75B - chr3L 17957119 intron Eip75B - chr3L 17957176 intron Eip75B - chr3L_14_17955001 chr3L_17955001 RAL-639 1022 chr3L 18000674 18000706 chr3L 18000751 18000783 8 77 1.0 2.0 1.5 3.2 109 chr3L 18000674 intron Eip75B - chr3L 18000728 intron Eip75B - chr3L 18000783 intron Eip75B - chr3L_8_18000001 chr3L_18000001 RAL-639 1023 chr3L 18029958 18029979 chr3L 18030035 18030056 6 77 0.5 0.0 0.2 5.0 98 chr3L 18029958 intron Eip75B - chr3L 18030007 intron Eip75B - chr3L 18030056 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-639 1024 chr3L 18047712 18047739 chr3L 18056769 18056796 roo 6 9057 1.5 2.0 1.8 2.1 9084 chr3L 18047712 intron Eip75B - chr3L 18052254 intron Eip75B - chr3L 18056796 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-639 1025 chr3L 18133032 18133039 chr3L 18133122 18133129 4 90 2.0 1.5 1.8 1.4 97 chr3L 18133032 intergenic Cyp312a1 - chr3L 18133080 intergenic Cyp312a1 - chr3L 18133129 intergenic Cyp312a1 - chr3L_4_18130001 chr3L_18130001 RAL-639 1026 chr3L 18172690 18172700 chr3L 18172766 18172776 5 76 2.5 2.5 2.5 1.4 86 chr3L 18172690 intron W - chr3L 18172733 intron W - chr3L 18172776 intron W - chr3L_5_18170001 chr3L_18170001 RAL-639 1027 chr3L 18203595 18203604 chr3L 18203689 18203699 4 95 3.5 0.0 1.8 1.4 104 chr3L 18203595 3` UTR CG7320 + chr3L 18203647 intergenic CG7320 + chr3L 18203699 intergenic CG7320 + chr3L_4_18200001 chr3L_18200001 RAL-639 1028 chr3L 18221104 18221124 chr3L 18221185 18221203 7 80 0.0 0.5 0.2 5.8 99 chr3L 18221104 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221203 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-639 1029 chr3L 18223171 18223186 chr3L 18223254 18223269 5 83 2.0 0.0 1.0 2.5 98 chr3L 18223171 intergenic not near genes chr3L 18223220 intergenic not near genes chr3L 18223269 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-639 1030 chr3L 18339310 18339424 chr3L 18339474 18339501 4 99 0.5 1.5 1.0 2.0 191 chr3L 18339310 intergenic not near genes chr3L 18339406 intergenic not near genes chr3L 18339501 intergenic not near genes chr3L_4_18335001 chr3L_18335001 RAL-639 1031 chr3L 18438289 18438315 chr3L 18438365 18438389 5 76 0.0 1.0 0.5 3.3 100 chr3L 18438289 intergenic skl - chr3L 18438339 intergenic skl - chr3L 18438389 intergenic skl - chr3L_5_18435001 chr3L_18435001 RAL-639 1032 chr3L 18456280 18456294 chr3L 18456367 18456382 4 87 1.0 1.5 1.2 1.8 102 chr3L 18456280 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456382 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-639 1033 chr3L 18506133 18506164 chr3L 18509596 18509609 F-element 8 3461 1.0 2.0 1.5 3.2 3476 chr3L 18506133 intergenic not near genes chr3L 18507871 intergenic not near genes chr3L 18509609 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-639 1034 chr3L 18528626 18528660 chr3L 18537787 18537821 roo 6 9161 1.0 1.0 1.0 3.0 9195 chr3L 18528626 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537821 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-639 1035 chr3L 18586577 18586588 chr3L 18586675 18586687 4 98 4.5 2.5 3.5 0.9 110 chr3L 18586577 intergenic not near genes chr3L 18586632 intergenic not near genes chr3L 18586687 intergenic not near genes chr3L_4_18585001 chr3L_18585001 RAL-639 1036 chr3L 18622159 18622173 chr3L 18622299 18622313 6 140 5.5 2.0 3.8 1.2 154 chr3L 18622159 intergenic not - chr3L 18622236 intergenic not -,bora + chr3L 18622313 intergenic not -,bora + chr3L_6_18620001 chr3L_18620001 RAL-639 1037 chr3L 18638585 18638597 chr3L 18638679 18638691 6 94 1.5 2.0 1.8 2.1 106 chr3L 18638585 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638691 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-639 1038 chr3L 18656184 18656213 chr3L 18656268 18656297 6 84 2.5 6.0 4.2 1.2 113 chr3L 18656184 intron MYPT-75D + chr3L 18656240 intron MYPT-75D + chr3L 18656297 intron MYPT-75D + chr3L_6_18655001 chr3L_18655001 RAL-639 1039 chr3L 18721776 18721793 chr3L 18721867 18721884 7 91 1.0 3.0 2.0 2.3 108 chr3L 18721776 intergenic CG12477 - chr3L 18721830 intergenic CG12477 - chr3L 18721884 intergenic CG12477 - chr3L_7_18720001 chr3L_18720001 RAL-639 1040 chr3L 18772415 18772438 chr3L 18781096 18781118 roo 8 8680 2.5 3.5 3.0 2.0 8703 chr3L 18772415 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-639 1041 chr3L 18957293 18957326 chr3L 18957374 18957407 11 80 1.5 1.0 1.2 5.0 114 chr3L 18957293 intergenic not near genes chr3L 18957350 intergenic not near genes chr3L 18957407 intergenic not near genes chr3L_11_18955001 chr3L_18955001 RAL-639 1042 chr3L 18969552 18969574 chr3L 18969625 18969650 8 76 2.0 4.0 3.0 2.0 98 chr3L 18969552 intergenic not near genes chr3L 18969601 intergenic not near genes chr3L 18969650 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-639 1043 chr3L 19008848 19008871 chr3L 19009185 19009207 jockey 4 337 4.5 8.0 6.2 0.6 359 chr3L 19008848 intron nkd - chr3L 19009028 intron nkd - chr3L 19009207 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-639 1044 chr3L 19074760 19074780 chr3L 19074900 19074920 7 140 3.0 3.0 3.0 1.8 160 chr3L 19074760 intron Mkp3 - chr3L 19074840 intron Mkp3 - chr3L 19074920 intron Mkp3 - chr3L_7_19070001 chr3L_19070001 RAL-639 1045 chr3L 19082035 19082069 chr3L 19082137 19082171 10 102 2.5 1.0 1.8 3.6 136 chr3L 19082035 intron Mkp3 - chr3L 19082103 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_10_19080001 chr3L_19080001 RAL-639 1046 chr3L 19115639 19115677 chr3L 19115814 19115855 BS 9 176 1.5 1.5 1.5 3.6 216 chr3L 19115639 intron CG14082 - chr3L 19115747 intron CG14082 - chr3L 19115855 intron CG14082 - chr3L_9_19115001 chr3L_19115001 RAL-639 1047 chr3L 19117040 19117076 chr3L 19124487 19124523 mdg1 10 7446 1.5 3.0 2.2 3.1 7483 chr3L 19117040 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-639 1048 chr3L 19154288 19154319 chr3L 19154855 19154886 10 570 27.5 27.5 27.5 0.4 598 chr3L 19154288 intron fz2 - chr3L 19154587 intron fz2 - chr3L 19154886 intron fz2 - chr3L_10_19150001 chr3L_19150001 RAL-639 1049 chr3L 19208069 19208090 chr3L 19209443 19209464 Doc 6 1374 2.5 1.5 2.0 2.0 1395 chr3L 19208069 intron fz2 - chr3L 19208766 intron fz2 - chr3L 19209464 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-639 1050 chr3L 19220633 19220633 chr3L 22908066 22908067 4 3687433 18.0 15.5 16.8 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-639 1051 chr3L 9307795 9307796 chr3L 19220637 19220637 4 9912842 9.5 21.0 15.2 0.2 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_4_14260001 chr3L_14260001 RAL-639 1052 chr3L 19220637 19220637 chr3L 22908066 22908066 5 3687429 19.5 15.5 17.5 0.3 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-639 1053 chr3L 19262249 19262275 chr3L 19263927 19263953 12 1678 13.0 24.5 18.8 0.6 1704 chr3L 19262249 3` UTR,3` UTR Bet1 +,Max - chr3L 19263101 exon Max - chr3L 19263953 intron,5` UTR,5` UTR Max -,CG42374 +,CG9666 + chr3L_12_19260001 chr3L_19260001 RAL-639 1054 chr3L 19274188 19274212 chr3L 19274262 19274291 10 78 2.5 1.5 2.0 3.3 103 chr3L 19274188 intergenic CG14085 + chr3L 19274240 intergenic CG14085 + chr3L 19274291 intergenic CG14085 + chr3L_10_19270001 chr3L_19270001 RAL-639 1055 chr3L 19295805 19295826 chr3L 19295931 19295952 5 126 1.5 0.5 1.0 2.5 147 chr3L 19295805 intron fal + chr3L 19295878 intron fal + chr3L 19295952 intron fal + chr3L_5_19295001 chr3L_19295001 RAL-639 1056 chr3L 19323554 19323578 chr3L 19325496 19325520 7 1942 12.5 9.5 11.0 0.6 1966 chr3L 19323554 intron pip - chr3L 19324537 intron pip - chr3L 19325520 intron pip - chr3L_7_19320001 chr3L_19320001 RAL-639 1057 chr3L 19323435 19323460 chr3L 19325767 19325793 4 2332 11.5 20.5 16.0 0.2 2358 chr3L 19323435 intron pip - chr3L 19324614 intron pip - chr3L 19325793 intron pip - chr3L_4_19320001 chr3L_19320001 RAL-639 1058 chr3L 19382444 19382468 chr3L 19382826 19382850 5 382 2.5 1.0 1.8 1.8 406 chr3L 19382444 intron CG32206 - chr3L 19382647 intron CG32206 - chr3L 19382850 intron CG32206 - chr3L_5_19380001 chr3L_19380001 RAL-639 1059 chr3L 19427469 19427489 chr3L 19427561 19427568 8 91 3.0 3.5 3.2 1.9 99 chr3L 19427469 intergenic not near genes chr3L 19427518 intergenic not near genes chr3L 19427568 intergenic not near genes chr3L_8_19425001 chr3L_19425001 RAL-639 1060 chr3L 19429460 19429494 chr3L 19429550 19429584 8 90 1.5 2.0 1.8 2.9 124 chr3L 19429460 intergenic not near genes chr3L 19429522 intergenic not near genes chr3L 19429584 intergenic not near genes chr3L_8_19425001 chr3L_19425001 RAL-639 1061 chr3L 19437024 19437053 chr3L 19437107 19437137 4 84 0.5 3.5 2.0 1.3 113 chr3L 19437024 intergenic not near genes chr3L 19437080 intergenic not near genes chr3L 19437137 intergenic not near genes chr3L_4_19435001 chr3L_19435001 RAL-639 1062 chr3L 19445181 19445210 chr3L 19445367 19445396 12 186 3.0 3.0 3.0 3.0 215 chr3L 19445181 intron CG33062 - chr3L 19445288 intron CG33062 - chr3L 19445396 intron CG33062 - chr3L_12_19445001 chr3L_19445001 RAL-639 1063 chr3L 19820298 19820302 chr3L 19827847 19827851 412 4 7548 3.0 0.5 1.8 1.4 7553 chr3L 19820298 intron Deaf1 + chr3L 19824074 intron Deaf1 + chr3L 19827851 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-639 1064 chr3L 19846614 19846630 chr3L 19846712 19846728 4 97 1.0 1.5 1.2 1.8 114 chr3L 19846614 intron Papss + chr3L 19846671 intron Papss + chr3L 19846728 intron Papss + chr3L_4_19845001 chr3L_19845001 RAL-639 1065 chr3L 19861827 19861843 chr3L 19863614 19863631 S-element 6 1788 1.0 1.0 1.0 3.0 1804 chr3L 19861827 5` UTR CR45433 + chr3L 19862729 intergenic not near genes chr3L 19863631 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-639 1066 chr3L 19899892 19899912 chr3L 19899988 19900009 5 97 2.0 2.0 2.0 1.7 117 chr3L 19899892 intron,intron Mi-2 -,Su(Tpl) - chr3L 19899950 intron,intron Mi-2 -,Su(Tpl) - chr3L 19900009 intron,intron Mi-2 -,Su(Tpl) - chr3L_5_19895001 chr3L_19895001 RAL-639 1067 chr3L 20057560 20057587 chr3L 20057673 20057700 8 112 2.0 2.5 2.2 2.5 140 chr3L 20057560 intergenic not near genes chr3L 20057630 intergenic not near genes chr3L 20057700 intergenic not near genes chr3L_8_20055001 chr3L_20055001 RAL-639 1068 chr3L 20081743 20081767 chr3L 20081826 20081832 8 79 2.0 2.0 2.0 2.7 89 chr3L 20081743 intron sNPF-R - chr3L 20081788 intron sNPF-R - chr3L 20081832 intron sNPF-R - chr3L_8_20080001 chr3L_20080001 RAL-639 1069 chr3L 20096267 20096276 chr3L 20096375 20096384 5 108 1.0 3.5 2.2 1.6 117 chr3L 20096267 intergenic not near genes chr3L 20096326 intergenic not near genes chr3L 20096384 intergenic not near genes chr3L_5_20095001 chr3L_20095001 RAL-639 1070 chr3L 20103942 20103960 chr3L 20104597 20104597 9 652 1.0 2.5 1.8 3.2 655 chr3L 20103942 intergenic CG14186 - chr3L 20104270 intergenic CR44679 +,CG14186 - chr3L 20104597 5` UTR CR44679 + chr3L_9_20100001 chr3L_20100001 RAL-639 1071 chr3L 20113656 20113686 chr3L 20122913 20122943 roo 7 9257 2.0 0.5 1.2 3.2 9287 chr3L 20113656 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122943 intergenic not near genes chr3L_7_20115001 chr3L_20115001 RAL-639 1072 chr3L 20143089 20143113 chr3L 20143166 20143189 6 78 2.0 2.5 2.2 1.9 100 chr3L 20143089 intergenic not near genes chr3L 20143139 intergenic not near genes chr3L 20143189 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-639 1073 chr3L 20150736 20150755 chr3L 20150867 20150886 5 131 0.5 1.5 1.0 2.5 150 chr3L 20150736 3` UTR CG42674 - chr3L 20150811 3` UTR CG42674 - chr3L 20150886 3` UTR CG42674 - chr3L_5_20150001 chr3L_20150001 RAL-639 1074 chr3L 20257337 20257360 chr3L 20258457 20258480 pogo 10 1118 0.5 3.0 1.8 3.6 1143 chr3L 20257337 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258480 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-639 1075 chr3L 20283676 20283706 chr3L 20283760 20283790 6 84 1.5 2.5 2.0 2.0 114 chr3L 20283676 intron gogo - chr3L 20283733 intron gogo - chr3L 20283790 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-639 1076 chr3L 20353993 20354007 chr3L 20354265 20354291 6 282 1.5 5.0 3.2 1.4 298 chr3L 20353993 5` UTR CG5618 + chr3L 20354142 5` UTR CG5618 + chr3L 20354291 5` UTR CG5618 + chr3L_6_20350001 chr3L_20350001 RAL-639 1077 chr3L 20386937 20386969 chr3L 20387039 20387071 10 102 2.5 3.5 3.0 2.5 134 chr3L 20386937 intron fbl + chr3L 20387004 intron fbl + chr3L 20387071 intron fbl + chr3L_10_20385001 chr3L_20385001 RAL-639 1078 chr3L 20462592 20462604 chr3L 20462672 20462685 4 81 1.5 1.5 1.5 1.6 93 chr3L 20462592 intron atk - chr3L 20462638 intron atk - chr3L 20462685 intron atk - chr3L_4_20460001 chr3L_20460001 RAL-639 1079 chr3L 20476764 20476779 chr3L 20484363 20484377 springer 5 7599 2.0 2.0 2.0 1.7 7613 chr3L 20476764 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484377 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-639 1080 chr3L 20487664 20487674 chr3L 20488114 20488125 INE-1 4 450 4.5 1.5 3.0 1.0 461 chr3L 20487664 intron ZnT77C - chr3L 20487894 intron ZnT77C - chr3L 20488125 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-639 1081 chr3L 20548368 20548383 chr3L 20548456 20548471 4 88 2.0 3.5 2.8 1.1 103 chr3L 20548368 intergenic not near genes chr3L 20548420 intergenic not near genes chr3L 20548471 intergenic not near genes chr3L_4_20545001 chr3L_20545001 RAL-639 1082 chr3L 20821296 20821311 chr3L 20824765 20824780 NOF 6 3469 1.0 2.5 1.8 2.1 3484 chr3L 20821296 intron Pka-R1 + chr3L 20823038 intron Pka-R1 + chr3L 20824780 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-639 1083 chr3L 20849275 20849301 chr3L 20849354 20849380 8 79 1.5 3.5 2.5 2.3 105 chr3L 20849275 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-639 1084 chr3L 20986759 20986787 chr3L 20986837 20986850 9 76 2.5 2.0 2.2 2.8 91 chr3L 20986759 intergenic not near genes chr3L 20986804 intergenic not near genes chr3L 20986850 intergenic not near genes chr3L_9_20985001 chr3L_20985001 RAL-639 1085 chr3L 21014925 21014946 chr3L 21023395 21023410 Tirant 8 8467 2.0 1.5 1.8 2.9 8485 chr3L 21014925 intron skd - chr3L 21019168 intron skd - chr3L 21023410 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-639 1086 chr3L 21082208 21082240 chr3L 21082286 21082317 7 78 0.5 1.5 1.0 3.5 109 chr3L 21082208 intron ko - chr3L 21082262 intron ko - chr3L 21082317 intron ko - chr3L_7_21080001 chr3L_21080001 RAL-639 1087 chr3L 21151865 21151896 chr3L 21156949 21156980 flea 9 5084 4.5 5.0 4.8 1.6 5115 chr3L 21151865 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-639 1088 chr3L 21306145 21306176 chr3L 21315304 21315335 roo 4 9158 2.5 2.0 2.2 1.2 9190 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310740 intron Pc - chr3L 21315335 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-639 1089 chr3L 4341331 4341332 chr3L 21448027 21448027 4 17106695 9.5 10.5 10.0 0.4 17106696 chr3L 4341331 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-639 1090 chr3L 21498836 21498870 chr3L 21500471 21500506 1360 5 1635 1.5 5.0 3.2 1.2 1670 chr3L 21498836 intron Glg1 - chr3L 21499671 intron Glg1 - chr3L 21500506 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-639 1091 chr3L 21608370 21608401 chr3L 21608462 21608491 9 91 3.0 2.0 2.5 2.6 121 chr3L 21608370 intron TfAP-2 + chr3L 21608430 intron TfAP-2 + chr3L 21608491 intron TfAP-2 + chr3L_9_21605001 chr3L_21605001 RAL-639 1092 chr3L 21650919 21650941 chr3L 21651095 21651117 12 176 2.0 2.5 2.2 3.8 198 chr3L 21650919 intron CG43980 + chr3L 21651018 intron CG43980 + chr3L 21651117 intron CG43980 + chr3L_12_21650001 chr3L_21650001 RAL-639 1093 chr3L 21749320 21749350 chr3L 21754479 21754510 Doc 7 5160 1.5 4.5 3.0 1.8 5190 chr3L 21749320 intron Syn1 - chr3L 21751915 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-639 1094 chr3L 21777247 21777277 chr3L 21777324 21777355 8 78 2.0 3.5 2.8 2.1 108 chr3L 21777247 intron CG42552 + chr3L 21777301 intron CG42552 + chr3L 21777355 intron CG42552 + chr3L_8_21775001 chr3L_21775001 RAL-639 1095 chr3L 21788696 21788706 chr3L 21789067 21789077 5 371 20.5 20.0 20.2 0.2 381 chr3L 21788696 intergenic not near genes chr3L 21788886 intergenic not near genes chr3L 21789077 intergenic not near genes chr3L_5_21785001 chr3L_21785001 RAL-639 1096 chr3L 21905488 21905508 chr3L 21905589 21905610 9 101 3.0 2.5 2.8 2.4 122 chr3L 21905488 intron mub + chr3L 21905549 intron mub + chr3L 21905610 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-639 1097 chr3L 21970804 21970834 chr3L 21970895 21970925 11 91 3.0 3.0 3.0 2.8 121 chr3L 21970804 intergenic not near genes chr3L 21970864 intergenic not near genes chr3L 21970925 intergenic not near genes chr3L_11_21970001 chr3L_21970001 RAL-639 1098 chr3L 22023221 22023249 chr3L 22023313 22023340 7 91 2.0 2.0 2.0 2.3 119 chr3L 22023221 intergenic not near genes chr3L 22023280 intergenic not near genes chr3L 22023340 intergenic not near genes chr3L_7_22020001 chr3L_22020001 RAL-639 1099 chr3L 22099673 22099708 chr3L 22105859 22105894 3S18 9 6186 4.0 3.0 3.5 2.0 6221 chr3L 22099673 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-639 1100 chr3L 22122169 22122194 chr3L 22122511 22122538 6 339 4.0 2.0 3.0 1.5 369 chr3L 22122169 5` UTR CR45236 + chr3L 22122354 intergenic CR45236 +,CR45235 + chr3L 22122538 intergenic CR45235 +,CR45236 + chr3L_6_22120001 chr3L_22120001 RAL-639 1101 chr3L 22130504 22130523 chr3L 22130649 22130669 7 145 1.5 3.5 2.5 2.0 165 chr3L 22130504 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_7_22130001 chr3L_22130001 RAL-639 1102 chr3L 22137522 22137551 chr3L 22137598 22137625 6 76 1.5 1.0 1.2 2.7 103 chr3L 22137522 intron olf413 + chr3L 22137574 intron olf413 + chr3L 22137625 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-639 1103 chr3L 22241312 22241322 chr3L 22241394 22241400 5 81 1.0 7.0 4.0 1.0 88 chr3L 22241312 intron olf413 + chr3L 22241356 intron olf413 + chr3L 22241400 intron olf413 + chr3L_5_22240001 chr3L_22240001 RAL-639 1104 chr3L 22447194 22447233 chr3L 22447285 22447324 15 91 2.0 2.5 2.2 4.7 130 chr3L 22447194 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447324 intergenic not near genes chr3L_15_22445001 chr3L_22445001 RAL-639 1105 chr3L 22543077 22543104 chr3L 22543154 22543181 6 77 1.0 0.0 0.5 4.0 104 chr3L 22543077 intergenic not near genes chr3L 22543129 intergenic not near genes chr3L 22543181 intergenic not near genes chr3L_6_22540001 chr3L_22540001 RAL-639 1106 chr3L 22570431 22570457 chr3L 22570572 22570593 7 142 2.5 4.5 3.5 1.6 162 chr3L 22570431 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570593 intergenic not near genes chr3L_7_22570001 chr3L_22570001 RAL-639 1107 chr3L 22577628 22577650 chr3L 22582402 22582437 Doc 9 4783 4.0 4.0 4.0 1.8 4809 chr3L 22577628 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_9_22580001 chr3L_22580001 RAL-639 1108 chr3L 22617203 22617220 chr3L 22624641 22624672 blood 6 7450 2.5 1.5 2.0 2.0 7469 chr3L 22617203 intron CG14459 - chr3L 22620938 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-639 1109 chr3L 22630740 22630774 chr3L 22630819 22630853 6 78 3.0 2.0 2.5 1.7 113 chr3L 22630740 intron CG14459 - chr3L 22630796 intron CG14459 - chr3L 22630853 intron CG14459 - chr3L_6_22630001 chr3L_22630001 RAL-639 1110 chr3L 22678088 22678107 chr3L 22678168 22678176 8 82 6.0 6.0 6.0 1.1 88 chr3L 22678088 intron CG14457 + chr3L 22678132 intron CG14457 + chr3L 22678176 intron CG14457 + chr3L_8_22675001 chr3L_22675001 RAL-639 1111 chr3L 22732463 22732488 chr3L 22732544 22732569 11 81 2.0 3.5 2.8 2.9 106 chr3L 22732463 intron CG11367 + chr3L 22732516 intron CG11367 + chr3L 22732569 intron CG11367 + chr3L_11_22730001 chr3L_22730001 RAL-639 1112 chr3L 22756400 22756427 chr3L 22756474 22756504 7 76 1.0 3.0 2.0 2.3 104 chr3L 22756400 intron SPoCk + chr3L 22756452 intron SPoCk + chr3L 22756504 intron SPoCk + chr3L_7_22755001 chr3L_22755001 RAL-639 1113 chr3L 22761386 22761417 chr3L 22766820 22766848 Ivk 8 5433 2.0 2.0 2.0 2.7 5462 chr3L 22761386 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_8_22760001 chr3L_22760001 RAL-639 1114 chr3L 22771635 22771666 chr3L 22771717 22771748 11 81 5.0 4.0 4.5 2.0 113 chr3L 22771635 intron SPoCk + chr3L 22771692 intron SPoCk + chr3L 22771748 intron SPoCk + chr3L_11_22770001 chr3L_22770001 RAL-639 1115 chr3L 22838590 22838621 chr3L 22838671 22838702 8 80 2.5 3.0 2.8 2.1 112 chr3L 22838590 intergenic CG11226 + chr3L 22838646 intergenic CG11226 + chr3L 22838702 intergenic not near genes chr3L_8_22835001 chr3L_22835001 RAL-639 1116 chr3L 22865982 22866015 chr3L 22867115 22867148 Doc 6 1133 1.0 1.0 1.0 3.0 1166 chr3L 22865982 intron CG33170 + chr3L 22866565 intron CG33170 + chr3L 22867148 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-639 1117 chr3L 22897203 22897215 chr3L 22897285 22897298 6 83 3.0 1.5 2.2 1.9 95 chr3L 22897203 intergenic not near genes chr3L 22897250 intergenic not near genes chr3L 22897298 intergenic not near genes chr3L_6_22895001 chr3L_22895001 RAL-639 1118 chr3L 9307795 9307796 chr3L 22908066 22908066 5 13600270 9.5 15.5 12.5 0.4 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_5_16105001 chr3L_16105001 RAL-639 1119 chr3L 19220633 19220637 chr3L 22908066 22908066 14 3687431 19.5 15.5 17.5 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_14_21060001 chr3L_21060001 RAL-639 1120 chr3L 22908066 22908066 chr3L 24821493 24821494 4 1913428 15.0 4.0 9.5 0.4 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-639 1121 chr3L 9307795 9307796 chr3L 22908067 22908067 4 13600271 9.5 16.5 13.0 0.3 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-639 1122 chr3L 19220633 19220637 chr3L 22908067 22908067 9 3687432 19.5 16.5 18.0 0.5 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-639 1123 chr3L 22908066 22908067 chr3L 23657065 23657066 8 748999 15.5 7.0 11.2 0.7 749000 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657066 intron AGO3 + chr3L_8_23280001 chr3L_23280001 RAL-639 1124 chr3L 25331636 25331650 chr3L 25331726 25331740 10 89 2.5 3.0 2.8 2.6 104 chr3L 25331636 intergenic not near genes chr3L 25331688 intergenic not near genes chr3L 25331740 intergenic not near genes chr3L_10_25330001 chr3L_25330001 RAL-639 1125 chr3L 25513584 25513606 chr3L 25513662 25513685 4 78 1.5 2.5 2.0 1.3 101 chr3L 25513584 intron CG41343 - chr3L 25513634 intron CG41343 - chr3L 25513685 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-639 1126 chr3L 25628504 25628527 chr3L 25633275 25633297 F-element 4 4771 3.0 1.5 2.2 1.2 4793 chr3L 25628504 intron CG41343 - chr3L 25630900 intron CG41343 - chr3L 25633297 intron CG41343 - chr3L_4_25630001 chr3L_25630001 RAL-639 1127 chr3L 26694925 26694948 chr3L 26695005 26695028 5 73 6.0 0.5 3.2 1.2 103 chr3L 26694925 intergenic not near genes chr3L 26694976 intergenic not near genes chr3L 26695028 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-639 1128 chr3L 27368890 27368908 chr3L 27369435 27369453 4 545 0.5 2.0 1.2 1.8 563 chr3L 27368890 intron Dbp80 + chr3L 27369172 intron Dbp80 + chr3L 27369453 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-639 1129 chr3R 1443430 1443447 chr3R 1443506 1443518 5 75 1.0 0.5 0.8 2.8 88 chr3R 1443430 intron CG40155 + chr3R 1443474 intron CG40155 + chr3R 1443518 intron CG40155 + chr3R_5_1440001 chr3R_1440001 RAL-639 1130 chr3R 2534144 2534153 chr3R 2541712 2541718 4 7566 14.0 16.0 15.0 0.2 7574 chr3R 2534144 intergenic not near genes chr3R 2537931 intergenic not near genes chr3R 2541718 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-639 1131 chr3R 2534155 2534166 chr3R 2541702 2541735 15 7564 12.5 13.0 12.8 1.1 7580 chr3R 2534155 intergenic not near genes chr3R 2537945 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_15_2535001 chr3R_2535001 RAL-639 1132 chr3R 3877471 3877503 chr3R 3877612 3877612 12 138 3.0 4.5 3.8 2.5 141 chr3R 3877471 intergenic not near genes chr3R 3877542 intergenic not near genes chr3R 3877612 intergenic not near genes chr3R_12_3875001 chr3R_3875001 RAL-639 1133 chr3R 4206072 4206095 chr3R 4211647 4211670 mdg3 5 5575 3.0 2.0 2.5 1.4 5598 chr3R 4206072 intron CG14636 - chr3R 4208871 intron CG14636 - chr3R 4211670 intron CG14636 - chr3R_5_4205001 chr3R_4205001 RAL-639 1134 chr3R 4366756 4366788 chr3R 4375138 4375171 roo 12 8383 2.0 2.0 2.0 4.0 8415 chr3R 4366756 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375171 5` UTR CR44922 + chr3R_12_4370001 chr3R_4370001 RAL-639 1135 chr3R 4408413 4408442 chr3R 4412717 4412746 Juan 7 4304 1.5 3.0 2.2 2.2 4333 chr3R 4408413 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-639 1136 chr3R 4593493 4593501 chr3R 4593573 4593581 4 81 0.5 3.0 1.8 1.4 88 chr3R 4593493 intergenic not near genes chr3R 4593537 intergenic not near genes chr3R 4593581 intergenic not near genes chr3R_4_4590001 chr3R_4590001 RAL-639 1137 chr3R 4609548 4609577 chr3R 4610712 4610741 1360 8 1164 4.0 4.0 4.0 1.6 1193 chr3R 4609548 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610741 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-639 1138 chr3R 4636605 4636627 chr3R 4637025 4637047 INE-1 5 420 2.5 2.5 2.5 1.4 442 chr3R 4636605 intergenic not near genes chr3R 4636826 intergenic not near genes chr3R 4637047 intergenic not near genes chr3R_5_4635001 chr3R_4635001 RAL-639 1139 chr3R 4678470 4678490 chr3R 4678821 4678840 5 351 2.0 2.0 2.0 1.7 370 chr3R 4678470 intron CG43427 + chr3R 4678655 intron CG43427 + chr3R 4678840 intron CG43427 + chr3R_5_4675001 chr3R_4675001 RAL-639 1140 chr3R 4753239 4753272 chr3R 4757542 4757575 F-element 6 4303 6.0 6.5 6.2 0.8 4336 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755407 intron,intron atms +,CG44098 - chr3R 4757575 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-639 1141 chr3R 4759726 4759747 chr3R 4761223 4761243 hopper2 5 1495 2.0 3.5 2.8 1.3 1517 chr3R 4759726 intron,intron atms +,CG44098 - chr3R 4760484 intron,intron atms +,CG44098 - chr3R 4761243 intron,intron atms +,CG44098 - chr3R_5_4760001 chr3R_4760001 RAL-639 1142 chr3R 4769158 4769188 chr3R 4769236 4769263 6 78 4.5 0.5 2.5 1.7 105 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769210 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-639 1143 chr3R 4861566 4861596 chr3R 4861647 4861676 11 80 3.0 2.0 2.5 3.1 110 chr3R 4861566 intron opa + chr3R 4861621 intron opa + chr3R 4861676 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-639 1144 chr3R 4896310 4896326 chr3R 4896403 4896419 7 93 1.0 2.5 1.8 2.5 109 chr3R 4896310 intergenic CR45580 + chr3R 4896364 intergenic CR45580 + chr3R 4896419 5` UTR CR45580 + chr3R_7_4895001 chr3R_4895001 RAL-639 1145 chr3R 4966008 4966030 chr3R 4966100 4966122 5 92 3.5 4.5 4.0 1.0 114 chr3R 4966008 intron CG1124 + chr3R 4966065 intron CG1124 + chr3R 4966122 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-639 1146 chr3R 4984298 4984327 chr3R 4984390 4984419 5 92 0.0 1.0 0.5 3.3 121 chr3R 4984298 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984358 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984419 intergenic CR43424 -,CG14662 - chr3R_5_4980001 chr3R_4980001 RAL-639 1147 chr3R 5045843 5045876 chr3R 5052945 5052977 HMS-Beagle 6 7102 5.5 0.5 3.0 1.5 7134 chr3R 5045843 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-639 1148 chr3R 5067983 5068010 chr3R 5073500 5073527 mdg3 7 5517 3.0 1.5 2.2 2.2 5544 chr3R 5067983 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-639 1149 chr3R 5134395 5134427 chr3R 5134475 5134488 12 76 2.5 2.5 2.5 3.4 93 chr3R 5134395 intergenic not near genes chr3R 5134442 intergenic not near genes chr3R 5134488 intergenic not near genes chr3R_12_5130001 chr3R_5130001 RAL-639 1150 chr3R 5206959 5206977 chr3R 5207953 5207971 7 994 5.5 5.5 5.5 1.1 1012 chr3R 5206959 intron cno - chr3R 5207465 intron cno - chr3R 5207971 intron cno - chr3R_7_5205001 chr3R_5205001 RAL-639 1151 chr3R 5292400 5292430 chr3R 5292477 5292507 9 77 2.5 1.5 2.0 3.0 107 chr3R 5292400 intron mtd - chr3R 5292454 intron mtd - chr3R 5292507 intron mtd - chr3R_9_5290001 chr3R_5290001 RAL-639 1152 chr3R 5338397 5338425 chr3R 5343572 5343602 Rt1c 16 5177 6.5 5.5 6.0 2.3 5205 chr3R 5338397 intron mtd - chr3R 5341000 intron mtd - chr3R 5343602 intron mtd - chr3R_16_5340001 chr3R_5340001 RAL-639 1153 chr3R 5351906 5351925 chr3R 5352909 5352921 5 999 17.0 23.5 20.2 0.2 1015 chr3R 5351906 intergenic not near genes chr3R 5352414 intergenic not near genes chr3R 5352921 intergenic not near genes chr3R_5_5350001 chr3R_5350001 RAL-639 1154 chr3R 5385974 5385997 chr3R 5386145 5386168 5 169 4.5 3.5 4.0 1.0 194 chr3R 5385974 intron kkv - chr3R 5386071 intron kkv - chr3R 5386168 intron kkv - chr3R_5_5385001 chr3R_5385001 RAL-639 1155 chr3R 5445987 5445994 chr3R 5452447 5452454 Burdock 4 6460 2.0 5.5 3.8 0.8 6467 chr3R 5445987 intron CG14669 + chr3R 5449220 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-639 1156 chr3R 5746018 5746046 chr3R 5746258 5746287 pogo 7 240 2.5 2.0 2.2 2.2 269 chr3R 5746018 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-639 1157 chr3R 5747014 5747044 chr3R 5753205 5753234 diver 9 6191 1.5 2.0 1.8 3.2 6220 chr3R 5747014 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753234 intergenic CG2091 - chr3R_9_5750001 chr3R_5750001 RAL-639 1158 chr3R 5822377 5822409 chr3R 5823544 5823576 1360 9 1167 4.5 2.5 3.5 2.0 1199 chr3R 5822377 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-639 1159 chr3R 5927567 5927591 chr3R 5927805 5927830 pogo 5 239 2.5 4.5 3.5 1.1 263 chr3R 5927567 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-639 1160 chr3R 5942470 5942498 chr3R 5942568 5942595 13 97 4.5 2.5 3.5 2.9 125 chr3R 5942470 intron CG34113 - chr3R 5942532 intron CG34113 - chr3R 5942595 intron CG34113 - chr3R_13_5940001 chr3R_5940001 RAL-639 1161 chr3R 6015961 6015993 chr3R 6024442 6024474 Tirant 8 8477 3.5 2.0 2.8 2.1 8513 chr3R 6015961 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024474 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-639 1162 chr3R 6042590 6042606 chr3R 6042683 6042700 5 94 2.0 2.0 2.0 1.7 110 chr3R 6042590 intergenic not near genes chr3R 6042645 intergenic not near genes chr3R 6042700 intergenic not near genes chr3R_5_6040001 chr3R_6040001 RAL-639 1163 chr3R 6141936 6141953 chr3R 6141992 6142030 5 73 2.0 2.5 2.2 1.6 94 chr3R 6141936 intergenic not near genes chr3R 6141983 intergenic not near genes chr3R 6142030 intergenic not near genes chr3R_5_6140001 chr3R_6140001 RAL-639 1164 chr3R 6158508 6158537 chr3R 6167091 6167106 Tirant 6 8578 3.0 3.0 3.0 1.5 8598 chr3R 6158508 intergenic not near genes chr3R 6162807 intergenic not near genes chr3R 6167106 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-639 1165 chr3R 6175172 6175204 chr3R 6182444 6182476 HMS-Beagle2 7 7271 2.5 0.5 1.5 2.8 7304 chr3R 6175172 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182476 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-639 1166 chr3R 6206285 6206317 chr3R 6206499 6206533 BS 8 214 3.0 1.0 2.0 2.7 248 chr3R 6206285 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_8_6205001 chr3R_6205001 RAL-639 1167 chr3R 6343709 6343730 chr3R 6343811 6343833 9 103 2.0 2.0 2.0 3.0 124 chr3R 6343709 3` UTR CG10298 + chr3R 6343771 3` UTR CG10298 + chr3R 6343833 intergenic CG10298 +,CG17919 + chr3R_9_6340001 chr3R_6340001 RAL-639 1168 chr3R 6510027 6510044 chr3R 6515108 6515125 jockey 5 5081 1.5 1.5 1.5 2.0 5098 chr3R 6510027 intergenic not near genes chr3R 6512576 intergenic not near genes chr3R 6515125 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-639 1169 chr3R 6609077 6609103 chr3R 6609294 6609320 4 217 1.0 2.0 1.5 1.6 243 chr3R 6609077 intergenic glob2 - chr3R 6609198 intergenic glob2 - chr3R 6609320 intergenic glob2 - chr3R_4_6605001 chr3R_6605001 RAL-639 1170 chr3R 6737497 6737531 chr3R 6739284 6739317 Doc 8 1787 2.5 2.5 2.5 2.3 1820 chr3R 6737497 intron pb - chr3R 6738407 intron pb - chr3R 6739317 intron pb - chr3R_8_6735001 chr3R_6735001 RAL-639 1171 chr3R 6862225 6862248 chr3R 6862312 6862335 11 87 3.0 4.5 3.8 2.3 110 chr3R 6862225 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862335 intergenic not near genes chr3R_11_6860001 chr3R_6860001 RAL-639 1172 chr3R 6866370 6866400 chr3R 6866678 6866709 7 308 1.0 2.0 1.5 2.8 339 chr3R 6866370 intergenic ftz + chr3R 6866540 intergenic ftz + chr3R 6866709 intergenic ftz + chr3R_7_6865001 chr3R_6865001 RAL-639 1173 chr3R 6952202 6952228 chr3R 6952671 6952682 7 465 3.0 3.5 3.2 1.7 480 chr3R 6952202 intron Antp - chr3R 6952442 intron Antp - chr3R 6952682 intron Antp - chr3R_7_6950001 chr3R_6950001 RAL-639 1174 chr3R 6978881 6978897 chr3R 6978965 6978982 5 85 3.0 2.0 2.5 1.4 101 chr3R 6978881 intron Antp - chr3R 6978932 intron Antp - chr3R 6978982 intron Antp - chr3R_5_6975001 chr3R_6975001 RAL-639 1175 chr3R 6987413 6987427 chr3R 6987496 6987510 6 82 0.5 2.5 1.5 2.4 97 chr3R 6987413 intron Antp - chr3R 6987462 intron Antp - chr3R 6987510 intron Antp - chr3R_6_6985001 chr3R_6985001 RAL-639 1176 chr3R 7173678 7173699 chr3R 7173758 7173779 5 80 2.0 1.5 1.8 1.8 101 chr3R 7173678 intron sas + chr3R 7173728 intron sas + chr3R 7173779 intron sas + chr3R_5_7170001 chr3R_7170001 RAL-639 1177 chr3R 7279598 7279626 chr3R 7279715 7279745 7 118 0.5 1.5 1.0 3.5 147 chr3R 7279598 intron rn - chr3R 7279672 intron rn - chr3R 7279745 intron rn - chr3R_7_7275001 chr3R_7275001 RAL-639 1178 chr3R 7387001 7387013 chr3R 7387103 7387115 6 102 3.5 1.5 2.5 1.7 114 chr3R 7387001 intergenic CR45560 + chr3R 7387058 intergenic CR45560 + chr3R 7387115 intergenic CR45560 + chr3R_6_7385001 chr3R_7385001 RAL-639 1179 chr3R 7404949 7404972 chr3R 7405025 7405047 8 76 0.0 2.5 1.2 3.6 98 chr3R 7404949 intergenic not near genes chr3R 7404998 intergenic not near genes chr3R 7405047 intergenic not near genes chr3R_8_7400001 chr3R_7400001 RAL-639 1180 chr3R 7417876 7417896 chr3R 7417961 7417975 5 84 5.0 1.5 3.2 1.2 99 chr3R 7417876 intergenic not near genes chr3R 7417926 intergenic not near genes chr3R 7417975 intergenic not near genes chr3R_5_7415001 chr3R_7415001 RAL-639 1181 chr3R 7489392 7489414 chr3R 7489488 7489510 9 96 3.5 2.5 3.0 2.2 118 chr3R 7489392 intron alpha-Est10 - chr3R 7489451 intron alpha-Est10 - chr3R 7489510 intron alpha-Est10 - chr3R_9_7485001 chr3R_7485001 RAL-639 1182 chr3R 7499743 7499775 chr3R 7499821 7499853 6 78 4.0 4.5 4.2 1.2 110 chr3R 7499743 intron alpha-Est9 - chr3R 7499798 intron alpha-Est9 - chr3R 7499853 intron alpha-Est9 - chr3R_6_7495001 chr3R_7495001 RAL-639 1183 chr3R 7541690 7541705 chr3R 7541779 7541794 4 89 1.0 3.0 2.0 1.3 104 chr3R 7541690 intergenic alpha-Est3 -,alpha-Est2 + chr3R 7541742 intergenic alpha-Est2 +,alpha-Est3 - chr3R 7541794 intergenic alpha-Est2 +,alpha-Est3 - chr3R_4_7540001 chr3R_7540001 RAL-639 1184 chr3R 7631072 7631090 chr3R 7631163 7631183 5 93 2.0 1.5 1.8 1.8 111 chr3R 7631072 intron CG34127 - chr3R 7631128 intron CG34127 - chr3R 7631183 intron CG34127 - chr3R_5_7630001 chr3R_7630001 RAL-639 1185 chr3R 7632744 7632781 chr3R 7632851 7632886 9 106 3.0 0.5 1.8 3.2 142 chr3R 7632744 intron CG34127 - chr3R 7632815 intron CG34127 - chr3R 7632886 intron CG34127 - chr3R_9_7630001 chr3R_7630001 RAL-639 1186 chr3R 7726162 7726188 chr3R 7726239 7726263 8 76 3.0 2.5 2.8 2.1 101 chr3R 7726162 intergenic not near genes chr3R 7726212 intergenic not near genes chr3R 7726263 intergenic not near genes chr3R_8_7725001 chr3R_7725001 RAL-639 1187 chr3R 7729464 7729499 chr3R 7737402 7737437 Stalker2 8 7938 2.5 3.0 2.8 2.1 7973 chr3R 7729464 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-639 1188 chr3R 7849645 7849670 chr3R 7850812 7850837 1360 7 1167 1.0 1.5 1.2 3.2 1192 chr3R 7849645 intron CG34384 + chr3R 7850241 intron CG34384 + chr3R 7850837 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-639 1189 chr3R 7945125 7945155 chr3R 7945201 7945231 4 76 2.0 2.5 2.2 1.2 106 chr3R 7945125 intron dsx - chr3R 7945178 intron dsx - chr3R 7945231 intron dsx - chr3R_4_7945001 chr3R_7945001 RAL-639 1190 chr3R 7971852 7971876 chr3R 7971931 7971955 5 79 1.0 2.0 1.5 2.0 103 chr3R 7971852 intergenic not near genes chr3R 7971904 intergenic not near genes chr3R 7971955 intergenic not near genes chr3R_5_7970001 chr3R_7970001 RAL-639 1191 chr3R 7973319 7973347 chr3R 7974381 7974408 1360 8 1062 0.0 4.0 2.0 2.7 1089 chr3R 7973319 intergenic not near genes chr3R 7973864 intergenic not near genes chr3R 7974408 3` UTR CD98hc - chr3R_8_7970001 chr3R_7970001 RAL-639 1192 chr3R 8042174 8042182 chr3R 8042364 8042372 5 189 13.0 10.0 11.5 0.4 198 chr3R 8042174 intron CG43060 + chr3R 8042273 intron CG43060 + chr3R 8042372 intron CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-639 1193 chr3R 8051968 8051991 chr3R 8052089 8052099 6 113 3.5 3.0 3.2 1.4 131 chr3R 8051968 intron CG43060 + chr3R 8052034 intron CG43060 + chr3R 8052099 intron CG43060 + chr3R_6_8050001 chr3R_8050001 RAL-639 1194 chr3R 8090272 8090301 chr3R 8090449 8090476 5 174 2.5 1.5 2.0 1.7 204 chr3R 8090272 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090476 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-639 1195 chr3R 8207556 8207577 chr3R 8208399 8208422 F-element 5 845 2.0 1.5 1.8 1.8 866 chr3R 8207556 intergenic not near genes chr3R 8207989 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-639 1196 chr3R 8261887 8261916 chr3R 8262168 8262187 8 273 18.5 9.5 14.0 0.5 300 chr3R 8261887 intergenic RpA-70 - chr3R 8262037 intergenic RpA-70 - chr3R 8262187 3` UTR RpA-70 - chr3R_8_8260001 chr3R_8260001 RAL-639 1197 chr3R 8273733 8273758 chr3R 8273820 8273845 5 87 1.5 0.5 1.0 2.5 112 chr3R 8273733 intergenic not near genes chr3R 8273789 intergenic not near genes chr3R 8273845 intergenic not near genes chr3R_5_8270001 chr3R_8270001 RAL-639 1198 chr3R 8339241 8339246 chr3R 21907534 21907536 10 13568290 11.5 21.0 16.2 0.6 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-639 1199 chr3R 8339247 8339247 chr3R 21907534 21907536 4 13568288 11.5 21.0 16.2 0.2 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-639 1200 chr3R 8403008 8403038 chr3R 8412174 8412204 roo 18 9165 3.5 2.5 3.0 4.5 9196 chr3R 8403008 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_18_8405001 chr3R_8405001 RAL-639 1201 chr3R 8412429 8412459 chr3R 8412551 8412573 4 121 3.0 1.5 2.2 1.2 144 chr3R 8412429 intron CG45263 - chr3R 8412501 intron CG45263 - chr3R 8412573 intron CG45263 - chr3R_4_8410001 chr3R_8410001 RAL-639 1202 chr3R 8478080 8478106 chr3R 8478160 8478186 7 79 2.5 2.0 2.2 2.2 106 chr3R 8478080 intergenic CG45263 - chr3R 8478133 intergenic not near genes chr3R 8478186 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-639 1203 chr3R 8541339 8541368 chr3R 8541420 8541449 11 80 9.5 5.5 7.5 1.3 110 chr3R 8541339 intergenic not near genes chr3R 8541394 intergenic not near genes chr3R 8541449 intergenic not near genes chr3R_11_8540001 chr3R_8540001 RAL-639 1204 chr3R 8555540 8555558 chr3R 8555712 8555730 5 172 3.5 2.5 3.0 1.2 190 chr3R 8555540 intergenic not near genes chr3R 8555635 intergenic not near genes chr3R 8555730 intergenic not near genes chr3R_5_8555001 chr3R_8555001 RAL-639 1205 chr3R 8570491 8570501 chr3R 8575127 8575137 HMS-Beagle 4 4636 3.0 5.5 4.2 0.8 4646 chr3R 8570491 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575137 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-639 1206 chr3R 8601779 8601793 chr3R 8610931 8610946 roo 5 9153 1.0 2.5 1.8 1.8 9167 chr3R 8601779 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610946 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-639 1207 chr3R 8621543 8621553 chr3R 8621619 8621630 6 77 6.0 3.5 4.8 1.0 87 chr3R 8621543 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621630 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-639 1208 chr3R 8894869 8894906 chr3R 8896025 8896062 1360 8 1156 1.5 0.5 1.0 4.0 1193 chr3R 8894869 intron pyd - chr3R 8895466 intron pyd - chr3R 8896062 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-639 1209 chr3R 8979885 8979918 chr3R 8979968 8980000 7 83 1.0 2.5 1.8 2.5 115 chr3R 8979885 intergenic not near genes chr3R 8979942 intergenic not near genes chr3R 8980000 intergenic not near genes chr3R_7_8975001 chr3R_8975001 RAL-639 1210 chr3R 9073221 9073245 chr3R 9073307 9073331 5 86 2.5 5.5 4.0 1.0 110 chr3R 9073221 intron pum - chr3R 9073276 intron pum - chr3R 9073331 intron pum - chr3R_5_9070001 chr3R_9070001 RAL-639 1211 chr3R 9099473 9099478 chr3R 9099548 9099561 5 81 1.0 4.5 2.8 1.3 88 chr3R 9099473 intron pum - chr3R 9099517 intron pum - chr3R 9099561 intron pum - chr3R_5_9095001 chr3R_9095001 RAL-639 1212 chr3R 9101848 9101866 chr3R 9101946 9101964 6 98 2.5 4.5 3.5 1.3 116 chr3R 9101848 intron pum - chr3R 9101906 intron pum - chr3R 9101964 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-639 1213 chr3R 9108872 9108879 chr3R 9108948 9108955 4 76 2.5 1.5 2.0 1.3 83 chr3R 9108872 intron pum - chr3R 9108914 intron pum - chr3R 9108955 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-639 1214 chr3R 9204254 9204270 chr3R 9204341 9204357 4 87 4.5 3.0 3.8 0.8 103 chr3R 9204254 intron pum - chr3R 9204306 intron pum - chr3R 9204357 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-639 1215 chr3R 9278785 9278809 chr3R 9284045 9284050 Rt1a 8 5256 1.0 7.0 4.0 1.6 5265 chr3R 9278785 intergenic not near genes chr3R 9281418 intergenic not near genes chr3R 9284050 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-639 1216 chr3R 9284349 9284375 chr3R 9284446 9284468 4 96 1.0 1.5 1.2 1.8 119 chr3R 9284349 intergenic not near genes chr3R 9284408 intergenic not near genes chr3R 9284468 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-639 1217 chr3R 9319571 9319604 chr3R 9320006 9320038 jockey 10 434 3.0 3.0 3.0 2.5 467 chr3R 9319571 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-639 1218 chr3R 9377640 9377679 chr3R 9377913 9377949 10 272 5.0 1.5 3.2 2.4 309 chr3R 9377640 intron FER - chr3R 9377794 intron FER - chr3R 9377949 intron FER - chr3R_10_9375001 chr3R_9375001 RAL-639 1219 chr3R 9601466 9601484 chr3R 9601584 9601601 4 118 4.0 1.0 2.5 1.1 135 chr3R 9601466 intron CG8312 + chr3R 9601534 intron CG8312 + chr3R 9601601 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-639 1220 chr3R 9702265 9702294 chr3R 9702341 9702368 9 75 1.5 3.0 2.2 2.8 103 chr3R 9702265 intron Unc-115a - chr3R 9702316 intron Unc-115a - chr3R 9702368 intron Unc-115a - chr3R_9_9700001 chr3R_9700001 RAL-639 1221 chr3R 10175940 10175974 chr3R 10176027 10176060 10 86 3.0 1.0 2.0 3.3 120 chr3R 10175940 intron CG12814 - chr3R 10176000 intron CG12814 - chr3R 10176060 intron CG12814 - chr3R_10_10175001 chr3R_10175001 RAL-639 1222 chr3R 10275560 10275578 chr3R 10275637 10275654 7 77 2.5 1.5 2.0 2.3 94 chr3R 10275560 intron CG43143 + chr3R 10275607 intron CG43143 + chr3R 10275654 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-639 1223 chr3R 10334914 10334945 chr3R 10334994 10335025 10 79 2.5 4.5 3.5 2.2 111 chr3R 10334914 exon sle + chr3R 10334970 exon sle + chr3R 10335025 exon sle + chr3R_10_10330001 chr3R_10330001 RAL-639 1224 chr3R 10531874 10531898 chr3R 10531948 10531979 7 80 1.5 1.5 1.5 2.8 105 chr3R 10531874 intron hth - chr3R 10531926 intron hth - chr3R 10531979 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-639 1225 chr3R 10683553 10683581 chr3R 10683666 10683694 10 113 1.5 2.5 2.0 3.3 141 chr3R 10683553 intron CR44230 + chr3R 10683624 intron CR44230 + chr3R 10683694 5` UTR CR44230 + chr3R_10_10680001 chr3R_10680001 RAL-639 1226 chr3R 10730486 10730503 chr3R 10730581 10730598 8 95 2.0 3.5 2.8 2.1 112 chr3R 10730486 intergenic not near genes chr3R 10730542 intergenic not near genes chr3R 10730598 intergenic not near genes chr3R_8_10730001 chr3R_10730001 RAL-639 1227 chr3R 10730993 10731015 chr3R 10731159 10731181 5 166 2.0 1.5 1.8 1.8 188 chr3R 10730993 intergenic not near genes chr3R 10731087 intergenic not near genes chr3R 10731181 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-639 1228 chr3R 10737567 10737600 chr3R 10737933 10737966 6 366 4.5 1.5 3.0 1.5 399 chr3R 10737567 intergenic TkR86C - chr3R 10737766 3` UTR TkR86C - chr3R 10737966 3` UTR TkR86C - chr3R_6_10735001 chr3R_10735001 RAL-639 1229 chr3R 10759486 10759503 chr3R 10759565 10759582 4 79 1.5 1.0 1.2 1.8 96 chr3R 10759486 intergenic CG31272 - chr3R 10759534 intergenic CG31272 - chr3R 10759582 intergenic CG31272 -,MED7 - chr3R_4_10755001 chr3R_10755001 RAL-639 1230 chr3R 10785814 10785840 chr3R 10785893 10785916 8 78 3.0 2.5 2.8 2.1 102 chr3R 10785814 intron Rbp1 + chr3R 10785865 intron Rbp1 + chr3R 10785916 intron Rbp1 + chr3R_8_10785001 chr3R_10785001 RAL-639 1231 chr3R 10850286 10850316 chr3R 10850822 10850852 13 536 2.5 2.5 2.5 3.7 566 chr3R 10850286 intron CG42394 + chr3R 10850569 intron CG42394 + chr3R 10850852 intron CG42394 + chr3R_13_10850001 chr3R_10850001 RAL-639 1232 chr3R 10870866 10870901 chr3R 10870945 10870982 7 80 1.5 5.0 3.2 1.7 116 chr3R 10870866 intergenic Fdh -,Tsp86D + chr3R 10870924 3` UTR Fdh - chr3R 10870982 3` UTR Fdh - chr3R_7_10870001 chr3R_10870001 RAL-639 1233 chr3R 10917683 10917708 chr3R 10917846 10917871 6 163 1.5 3.5 2.5 1.7 188 chr3R 10917683 intergenic not near genes chr3R 10917777 intergenic not near genes chr3R 10917871 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-639 1234 chr3R 10919683 10919715 chr3R 10919761 10919793 11 78 3.0 1.0 2.0 3.7 110 chr3R 10919683 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-639 1235 chr3R 10920043 10920063 chr3R 10920121 10920141 6 78 3.5 3.5 3.5 1.3 98 chr3R 10920043 intergenic not near genes chr3R 10920092 intergenic not near genes chr3R 10920141 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-639 1236 chr3R 10921812 10921845 chr3R 10922246 10922279 7 434 2.5 1.0 1.8 2.5 467 chr3R 10921812 intergenic not near genes chr3R 10922046 intergenic not near genes chr3R 10922279 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-639 1237 chr3R 11007571 11007592 chr3R 11007835 11007857 8 264 2.0 4.5 3.2 1.9 286 chr3R 11007571 intron CG34114 + chr3R 11007714 intron CG34114 + chr3R 11007857 intron CG34114 + chr3R_8_11005001 chr3R_11005001 RAL-639 1238 chr3R 11020357 11020386 chr3R 11020599 11020628 5 239 0.5 4.5 2.5 1.4 271 chr3R 11020357 intron CG34114 + chr3R 11020492 intron CG34114 + chr3R 11020628 intron CG34114 + chr3R_5_11020001 chr3R_11020001 RAL-639 1239 chr3R 11087435 11087466 chr3R 11087510 11087542 12 76 1.5 2.0 1.8 4.3 107 chr3R 11087435 intergenic not near genes chr3R 11087488 intergenic not near genes chr3R 11087542 intergenic not near genes chr3R_12_11085001 chr3R_11085001 RAL-639 1240 chr3R 11099656 11099685 chr3R 11099788 11099817 8 132 0.5 2.0 1.2 3.6 161 chr3R 11099656 intergenic not near genes chr3R 11099736 intergenic not near genes chr3R 11099817 intergenic not near genes chr3R_8_11095001 chr3R_11095001 RAL-639 1241 chr3R 11102324 11102351 chr3R 11102404 11102430 9 80 4.5 3.5 4.0 1.8 106 chr3R 11102324 intergenic not near genes chr3R 11102377 intergenic not near genes chr3R 11102430 intergenic not near genes chr3R_9_11100001 chr3R_11100001 RAL-639 1242 chr3R 11307188 11307223 chr3R 11307275 11307278 6 82 2.0 4.5 3.2 1.4 90 chr3R 11307188 intergenic not near genes chr3R 11307233 intergenic not near genes chr3R 11307278 intergenic not near genes chr3R_6_11305001 chr3R_11305001 RAL-639 1243 chr3R 11342541 11342574 chr3R 11342617 11342650 8 76 0.5 1.0 0.8 4.4 109 chr3R 11342541 intron pros + chr3R 11342596 intron pros + chr3R 11342650 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-639 1244 chr3R 11379248 11379263 chr3R 11388389 11388417 roo 4 9151 4.5 2.0 3.2 1.0 9169 chr3R 11379248 intron pros + chr3R 11383832 intron pros + chr3R 11388417 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-639 1245 chr3R 11518813 11518846 chr3R 11518904 11518937 6 91 2.5 5.0 3.8 1.2 124 chr3R 11518813 intergenic not near genes chr3R 11518875 intergenic not near genes chr3R 11518937 intergenic not near genes chr3R_6_11515001 chr3R_11515001 RAL-639 1246 chr3R 11567806 11567812 chr3R 11567888 11567899 4 86 0.0 4.5 2.2 1.2 93 chr3R 11567806 intergenic not near genes chr3R 11567852 intergenic not near genes chr3R 11567899 intergenic not near genes chr3R_4_11565001 chr3R_11565001 RAL-639 1247 chr3R 11608629 11608646 chr3R 11608900 11608916 6 271 4.0 2.0 3.0 1.5 287 chr3R 11608629 intron Jupiter - chr3R 11608772 intron Jupiter - chr3R 11608916 intron Jupiter - chr3R_6_11605001 chr3R_11605001 RAL-639 1248 chr3R 11694737 11694755 chr3R 11694830 11694848 4 93 2.5 4.0 3.2 1.0 111 chr3R 11694737 intergenic Fer3 - chr3R 11694792 intergenic Fer3 - chr3R 11694848 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-639 1249 chr3R 11695740 11695770 chr3R 11695821 11695851 6 81 1.5 2.5 2.0 2.0 111 chr3R 11695740 intergenic not near genes chr3R 11695796 intergenic not near genes chr3R 11695851 intergenic not near genes chr3R_6_11695001 chr3R_11695001 RAL-639 1250 chr3R 11734163 11734190 chr3R 11734282 11734309 7 119 3.0 2.0 2.5 2.0 146 chr3R 11734163 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734309 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-639 1251 chr3R 11841068 11841100 chr3R 11846256 11846275 BS 8 5188 3.0 2.5 2.8 2.1 5207 chr3R 11841068 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846275 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-639 1252 chr3R 11853436 11853470 chr3R 11853585 11853617 6 148 2.0 4.0 3.0 1.5 181 chr3R 11853436 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853617 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-639 1253 chr3R 11853770 11853799 chr3R 11853875 11853904 11 105 2.5 3.5 3.0 2.8 134 chr3R 11853770 intron CG6959 - chr3R 11853837 intron CG6959 - chr3R 11853904 intron CG6959 - chr3R_11_11850001 chr3R_11850001 RAL-639 1254 chr3R 11990649 11990682 chr3R 11990737 11990770 5 88 1.5 0.0 0.8 2.8 121 chr3R 11990649 intron mfas - chr3R 11990710 intron mfas - chr3R 11990770 intron mfas - chr3R_5_11990001 chr3R_11990001 RAL-639 1255 chr3R 12022887 12022916 chr3R 12025064 12025093 pogo 9 2176 1.0 1.5 1.2 4.1 2206 chr3R 12022887 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025093 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-639 1256 chr3R 12040192 12040212 chr3R 12040293 12040302 7 99 4.5 1.0 2.8 1.8 110 chr3R 12040192 intergenic CG14736 + chr3R 12040247 intergenic CG14736 + chr3R 12040302 intergenic CG14736 + chr3R_7_12040001 chr3R_12040001 RAL-639 1257 chr3R 12111902 12111911 chr3R 12111968 12111986 5 73 0.0 2.0 1.0 2.5 84 chr3R 12111902 intergenic dpr17 + chr3R 12111944 intergenic not near genes chr3R 12111986 intergenic not near genes chr3R_5_12110001 chr3R_12110001 RAL-639 1258 chr3R 12247143 12247171 chr3R 12247228 12247255 5 85 2.0 3.0 2.5 1.4 112 chr3R 12247143 intergenic not near genes chr3R 12247199 intergenic not near genes chr3R 12247255 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-639 1259 chr3R 12299807 12299838 chr3R 12299900 12299929 7 92 3.5 2.0 2.8 1.8 122 chr3R 12299807 intron svp + chr3R 12299868 intron svp + chr3R 12299929 intron svp + chr3R_7_12295001 chr3R_12295001 RAL-639 1260 chr3R 12314226 12314260 chr3R 12314340 12314374 9 113 2.5 2.0 2.2 2.8 148 chr3R 12314226 intergenic not near genes chr3R 12314300 intergenic not near genes chr3R 12314374 intergenic not near genes chr3R_9_12310001 chr3R_12310001 RAL-639 1261 chr3R 12328172 12328186 chr3R 12328283 12328295 6 110 1.0 0.0 0.5 4.0 123 chr3R 12328172 intergenic CR45584 + chr3R 12328234 intergenic CR45584 + chr3R 12328295 intergenic CR45584 + chr3R_6_12325001 chr3R_12325001 RAL-639 1262 chr3R 12546454 12546482 chr3R 12546537 12546565 10 83 4.0 2.5 3.2 2.4 111 chr3R 12546454 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546565 intron Octbeta3R - chr3R_10_12545001 chr3R_12545001 RAL-639 1263 chr3R 12568501 12568526 chr3R 12568580 12568606 7 80 1.0 4.0 2.5 2.0 105 chr3R 12568501 intron Octbeta2R - chr3R 12568554 intron Octbeta2R - chr3R 12568606 intron Octbeta2R - chr3R_7_12565001 chr3R_12565001 RAL-639 1264 chr3R 12599378 12599406 chr3R 12599461 12599484 7 82 1.0 1.5 1.2 3.2 106 chr3R 12599378 intergenic not near genes chr3R 12599431 intergenic not near genes chr3R 12599484 intergenic not near genes chr3R_7_12595001 chr3R_12595001 RAL-639 1265 chr3R 12706470 12706477 chr3R 12715782 12715789 5 9312 37.0 18.5 27.8 0.2 9319 chr3R 12706470 exon mus308 - chr3R 12711130 exon mus308 - chr3R 12715789 intron Men - chr3R_5_12710001 chr3R_12710001 RAL-639 1266 chr3R 12733476 12733504 chr3R 12733553 12733581 10 76 2.5 2.0 2.2 3.1 105 chr3R 12733476 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733581 intergenic not near genes chr3R_10_12730001 chr3R_12730001 RAL-639 1267 chr3R 12763121 12763144 chr3R 12763198 12763220 4 76 0.0 0.0 0.0 4.0 99 chr3R 12763121 intron beat-Vc - chr3R 12763170 intron beat-Vc - chr3R 12763220 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-639 1268 chr3R 12766097 12766108 chr3R 12766220 12766232 4 123 1.0 0.5 0.8 2.2 135 chr3R 12766097 intron beat-Vc - chr3R 12766164 intron beat-Vc - chr3R 12766232 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-639 1269 chr3R 12778940 12778972 chr3R 12779071 12779101 8 131 3.0 3.0 3.0 2.0 161 chr3R 12778940 intron beat-Vc - chr3R 12779020 intron beat-Vc - chr3R 12779101 intron beat-Vc - chr3R_8_12775001 chr3R_12775001 RAL-639 1270 chr3R 12786456 12786490 chr3R 12786813 12786847 7 358 1.5 0.5 1.0 3.5 391 chr3R 12786456 intergenic not near genes chr3R 12786652 intergenic not near genes chr3R 12786847 intergenic not near genes chr3R_7_12785001 chr3R_12785001 RAL-639 1271 chr3R 12814241 12814265 chr3R 12814318 12814338 8 75 2.0 1.5 1.8 2.9 97 chr3R 12814241 intron CG31345 - chr3R 12814290 intron CG31345 - chr3R 12814338 intron CG31345 - chr3R_8_12810001 chr3R_12810001 RAL-639 1272 chr3R 12859561 12859590 chr3R 12859638 12859666 8 75 3.0 1.5 2.2 2.5 105 chr3R 12859561 intergenic CG10126 - chr3R 12859614 intergenic CG10126 - chr3R 12859666 intergenic CG10126 - chr3R_8_12855001 chr3R_12855001 RAL-639 1273 chr3R 12920152 12920184 chr3R 12925355 12925383 copia 7 5201 3.0 1.5 2.2 2.2 5231 chr3R 12920152 intron beat-Vb + chr3R 12922768 intron beat-Vb + chr3R 12925383 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-639 1274 chr3R 12972560 12972583 chr3R 12972699 12972722 4 139 1.5 3.0 2.2 1.2 162 chr3R 12972560 intron CG7381 - chr3R 12972641 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_4_12970001 chr3R_12970001 RAL-639 1275 chr3R 13326948 13326961 chr3R 13327035 13327056 6 92 3.0 3.5 3.2 1.4 108 chr3R 13326948 intergenic not near genes chr3R 13327002 intergenic not near genes chr3R 13327056 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-639 1276 chr3R 13356090 13356123 chr3R 13356174 13356207 5 84 0.5 2.0 1.2 2.3 117 chr3R 13356090 intergenic not near genes chr3R 13356148 intergenic not near genes chr3R 13356207 intergenic not near genes chr3R_5_13355001 chr3R_13355001 RAL-639 1277 chr3R 13391645 13391668 chr3R 13391723 13391742 8 78 3.0 3.0 3.0 2.0 97 chr3R 13391645 intron CCHa2 - chr3R 13391694 intron CCHa2 - chr3R 13391742 intron CCHa2 - chr3R_8_13390001 chr3R_13390001 RAL-639 1278 chr3R 13693028 13693028 chr3R 21907534 21907535 5 8214507 14.5 21.0 17.8 0.3 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-639 1279 chr3R 13714522 13714540 chr3R 13714661 13714679 6 139 1.5 2.0 1.8 2.1 157 chr3R 13714522 intergenic CR34044 - chr3R 13714600 intergenic CR34044 - chr3R 13714679 intergenic CR34044 - chr3R_6_13710001 chr3R_13710001 RAL-639 1280 chr3R 13863687 13863713 chr3R 13863772 13863799 7 87 3.0 3.5 3.2 1.7 112 chr3R 13863687 intergenic not near genes chr3R 13863743 intergenic not near genes chr3R 13863799 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-639 1281 chr3R 14014280 14014296 chr3R 14014412 14014428 4 132 2.5 0.0 1.2 1.8 148 chr3R 14014280 intron rdx - chr3R 14014354 intron rdx - chr3R 14014428 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-639 1282 chr3R 14049014 14049040 chr3R 14049094 14049120 7 78 0.5 0.5 0.5 4.7 106 chr3R 14049014 intergenic not near genes chr3R 14049067 intergenic not near genes chr3R 14049120 intergenic not near genes chr3R_7_14045001 chr3R_14045001 RAL-639 1283 chr3R 14058123 14058150 chr3R 14058243 14058270 5 120 1.5 0.5 1.0 2.5 147 chr3R 14058123 intron foxo + chr3R 14058196 intron foxo + chr3R 14058270 intron foxo + chr3R_5_14055001 chr3R_14055001 RAL-639 1284 chr3R 14067141 14067152 chr3R 14067220 14067231 7 79 1.5 1.0 1.2 3.2 90 chr3R 14067141 exon foxo + chr3R 14067186 intron foxo + chr3R 14067231 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-639 1285 chr3R 14070129 14070146 chr3R 14070210 14070227 8 80 4.0 2.0 3.0 2.0 98 chr3R 14070129 intron foxo + chr3R 14070178 intron foxo + chr3R 14070227 intron foxo + chr3R_8_14070001 chr3R_14070001 RAL-639 1286 chr3R 14119687 14119710 chr3R 14119765 14119765 12 76 3.5 4.0 3.8 2.5 78 chr3R 14119687 3` UTR Abi - chr3R 14119726 3` UTR Abi - chr3R 14119765 3` UTR Abi - chr3R_12_14115001 chr3R_14115001 RAL-639 1287 chr3R 14180812 14180828 chr3R 14185577 14185593 F-element 4 4765 0.0 2.0 1.0 2.0 4781 chr3R 14180812 intron Dop1R1 - chr3R 14183202 intron Dop1R1 - chr3R 14185593 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-639 1288 chr3R 14294038 14294067 chr3R 14294116 14294144 10 77 2.5 2.5 2.5 2.9 106 chr3R 14294038 intron CG12207 + chr3R 14294091 intron CG12207 + chr3R 14294144 intron CG12207 + chr3R_10_14290001 chr3R_14290001 RAL-639 1289 chr3R 14327690 14327720 chr3R 14327772 14327802 8 82 2.5 2.0 2.2 2.5 112 chr3R 14327690 3` UTR CG3321 + chr3R 14327746 intergenic CG3321 +,spn-B + chr3R 14327802 intergenic CG3321 +,spn-B + chr3R_8_14325001 chr3R_14325001 RAL-639 1290 chr3R 14426587 14426615 chr3R 14426740 14426769 5 153 22.0 19.0 20.5 0.2 182 chr3R 14426587 intron cv-c - chr3R 14426678 intron cv-c - chr3R 14426769 intron cv-c - chr3R_5_14425001 chr3R_14425001 RAL-639 1291 chr3R 14440722 14440754 chr3R 14440798 14440830 6 76 1.0 2.5 1.8 2.1 108 chr3R 14440722 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440830 intron cv-c - chr3R_6_14440001 chr3R_14440001 RAL-639 1292 chr3R 14458732 14458747 chr3R 14458809 14458824 8 76 2.5 2.0 2.2 2.5 92 chr3R 14458732 intron cv-c - chr3R 14458778 intron cv-c - chr3R 14458824 intron cv-c - chr3R_8_14455001 chr3R_14455001 RAL-639 1293 chr3R 14482390 14482406 chr3R 14482466 14482482 4 76 4.0 0.0 2.0 1.3 92 chr3R 14482390 intergenic not near genes chr3R 14482436 intergenic not near genes chr3R 14482482 intergenic not near genes chr3R_4_14480001 chr3R_14480001 RAL-639 1294 chr3R 14497407 14497436 chr3R 14497488 14497506 12 79 1.5 1.0 1.2 5.5 99 chr3R 14497407 intron CR44177 + chr3R 14497456 intron CR44177 + chr3R 14497506 intron CR44177 + chr3R_12_14495001 chr3R_14495001 RAL-639 1295 chr3R 14608455 14608469 chr3R 14608546 14608561 5 92 3.0 1.5 2.2 1.6 106 chr3R 14608455 intergenic stumps + chr3R 14608508 intergenic stumps + chr3R 14608561 intergenic stumps + chr3R_5_14605001 chr3R_14605001 RAL-639 1296 chr3R 14662315 14662339 chr3R 14662396 14662419 6 81 2.5 2.5 2.5 1.7 104 chr3R 14662315 exon Rad17 - chr3R 14662367 intron Rad17 - chr3R 14662419 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-639 1297 chr3R 14685787 14685808 chr3R 14685868 14685888 7 81 0.5 2.5 1.5 2.8 101 chr3R 14685787 intron Meltrin - chr3R 14685838 intron Meltrin - chr3R 14685888 intron Meltrin - chr3R_7_14685001 chr3R_14685001 RAL-639 1298 chr3R 14704410 14704416 chr3R 14704487 14704493 4 77 1.0 1.5 1.2 1.8 83 chr3R 14704410 intron kibra - chr3R 14704452 intron kibra - chr3R 14704493 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-639 1299 chr3R 14716684 14716713 chr3R 14716766 14716795 7 81 1.5 3.0 2.2 2.2 111 chr3R 14716684 intron kibra - chr3R 14716740 intron kibra - chr3R 14716795 intron kibra - chr3R_7_14715001 chr3R_14715001 RAL-639 1300 chr3R 14821620 14821646 chr3R 14821767 14821795 6 148 2.5 1.5 2.0 2.0 175 chr3R 14821620 intron btsz - chr3R 14821708 intron btsz - chr3R 14821795 intron btsz - chr3R_6_14820001 chr3R_14820001 RAL-639 1301 chr3R 14877885 14877892 chr3R 14877947 14877969 4 73 1.0 2.0 1.5 1.6 84 chr3R 14877885 intergenic not near genes chr3R 14877927 intergenic not near genes chr3R 14877969 intergenic not near genes chr3R_4_14875001 chr3R_14875001 RAL-639 1302 chr3R 14927249 14927272 chr3R 14927345 14927369 10 98 2.5 3.0 2.8 2.6 120 chr3R 14927249 intergenic not near genes chr3R 14927309 intergenic not near genes chr3R 14927369 intergenic not near genes chr3R_10_14925001 chr3R_14925001 RAL-639 1303 chr3R 14941340 14941361 chr3R 14941444 14941464 9 104 0.5 3.0 1.8 3.2 124 chr3R 14941340 intergenic not near genes chr3R 14941402 intergenic not near genes chr3R 14941464 intergenic not near genes chr3R_9_14940001 chr3R_14940001 RAL-639 1304 chr3R 14955153 14955175 chr3R 14955243 14955265 8 90 4.0 1.0 2.5 2.3 112 chr3R 14955153 intergenic not near genes chr3R 14955209 intergenic not near genes chr3R 14955265 intergenic not near genes chr3R_8_14955001 chr3R_14955001 RAL-639 1305 chr3R 14970886 14970901 chr3R 14970973 14970988 6 86 1.5 4.0 2.8 1.6 102 chr3R 14970886 intergenic not near genes chr3R 14970937 intergenic not near genes chr3R 14970988 intergenic not near genes chr3R_6_14970001 chr3R_14970001 RAL-639 1306 chr3R 14988493 14988523 chr3R 14988598 14988628 5 105 1.0 2.0 1.5 2.0 135 chr3R 14988493 intergenic not near genes chr3R 14988560 intergenic not near genes chr3R 14988628 intergenic not near genes chr3R_5_14985001 chr3R_14985001 RAL-639 1307 chr3R 14994593 14994616 chr3R 14994681 14994688 6 85 1.5 2.0 1.8 2.1 95 chr3R 14994593 intergenic not near genes chr3R 14994640 intergenic not near genes chr3R 14994688 intergenic not near genes chr3R_6_14990001 chr3R_14990001 RAL-639 1308 chr3R 15041435 15041455 chr3R 15045203 15045223 Doc 6 3768 0.5 1.5 1.0 3.0 3788 chr3R 15041435 intergenic not near genes chr3R 15043329 intergenic not near genes chr3R 15045223 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-639 1309 chr3R 15102502 15102527 chr3R 15109757 15109782 412 6 7255 2.5 5.5 4.0 1.2 7280 chr3R 15102502 intron CG42788 - chr3R 15106142 intron CG42788 - chr3R 15109782 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-639 1310 chr3R 15114915 15114948 chr3R 15114992 15115025 6 77 0.5 1.5 1.0 3.0 110 chr3R 15114915 intron CG42788 - chr3R 15114970 intron CG42788 - chr3R 15115025 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-639 1311 chr3R 15159208 15159221 chr3R 15159604 15159617 4 396 1.5 2.0 1.8 1.4 409 chr3R 15159208 intron Gyc88E + chr3R 15159412 intron Gyc88E + chr3R 15159617 intron Gyc88E + chr3R_4_15155001 chr3R_15155001 RAL-639 1312 chr3R 15190646 15190679 chr3R 15190771 15190804 5 124 2.5 1.5 2.0 1.7 158 chr3R 15190646 3` UTR Gyc88E + chr3R 15190725 3` UTR Gyc88E + chr3R 15190804 3` UTR Gyc88E + chr3R_5_15190001 chr3R_15190001 RAL-639 1313 chr3R 15308922 15308947 chr3R 15309007 15309033 5 86 1.5 0.0 0.8 2.8 111 chr3R 15308922 intergenic Tm1 + chr3R 15308978 intergenic Tm1 + chr3R 15309033 intergenic Tm1 + chr3R_5_15305001 chr3R_15305001 RAL-639 1314 chr3R 15517606 15517633 chr3R 15517681 15517716 6 80 2.5 0.0 1.2 2.7 110 chr3R 15517606 intergenic not near genes chr3R 15517661 intergenic not near genes chr3R 15517716 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-639 1315 chr3R 15594665 15594675 chr3R 15594748 15594757 7 83 0.0 3.0 1.5 2.8 92 chr3R 15594665 intergenic not near genes chr3R 15594711 intergenic not near genes chr3R 15594757 intergenic not near genes chr3R_7_15590001 chr3R_15590001 RAL-639 1316 chr3R 15601164 15601194 chr3R 15608686 15608715 412 8 7522 3.5 1.5 2.5 2.3 7551 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-639 1317 chr3R 15618736 15618763 chr3R 15626208 15626237 blood 7 7473 2.5 5.5 4.0 1.4 7501 chr3R 15618736 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-639 1318 chr3R 15646792 15646800 chr3R 15646875 15646883 4 83 0.0 4.0 2.0 1.3 91 chr3R 15646792 intergenic not near genes chr3R 15646838 intergenic not near genes chr3R 15646883 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-639 1319 chr3R 15670173 15670185 chr3R 15670256 15670268 4 82 7.5 0.0 3.8 0.8 95 chr3R 15670173 intron pxb + chr3R 15670220 intron pxb + chr3R 15670268 intron pxb + chr3R_4_15670001 chr3R_15670001 RAL-639 1320 chr3R 15691187 15691325 chr3R 15691292 15691412 9 91 0.0 0.0 0.0 9.0 225 chr3R 15691187 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691412 intergenic not near genes chr3R_9_15690001 chr3R_15690001 RAL-639 1321 chr3R 15937432 15937445 chr3R 15937518 15937532 4 86 1.5 5.0 3.2 1.0 100 chr3R 15937432 intron Sap47 + chr3R 15937482 intron Sap47 + chr3R 15937532 intron Sap47 + chr3R_4_15935001 chr3R_15935001 RAL-639 1322 chr3R 16048857 16048877 chr3R 16048943 16048964 4 87 4.5 2.0 3.2 1.0 107 chr3R 16048857 intron ird5 - chr3R 16048910 intron ird5 - chr3R 16048964 intron ird5 - chr3R_4_16045001 chr3R_16045001 RAL-639 1323 chr3R 16073437 16073462 chr3R 16073541 16073566 8 104 2.5 0.0 1.2 3.6 129 chr3R 16073437 intron Mhcl - chr3R 16073502 intron Mhcl - chr3R 16073566 intron Mhcl - chr3R_8_16070001 chr3R_16070001 RAL-639 1324 chr3R 16195561 16195578 chr3R 16195782 16195799 4 220 2.5 2.0 2.2 1.2 238 chr3R 16195561 intron sra + chr3R 16195680 intron sra + chr3R 16195799 intron sra + chr3R_4_16195001 chr3R_16195001 RAL-639 1325 chr3R 16472582 16472599 chr3R 16472658 16472669 4 73 4.0 6.5 5.2 0.6 87 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472669 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-639 1326 chr3R 16520583 16520619 chr3R 16520662 16520698 11 77 2.5 3.0 2.8 2.9 115 chr3R 16520583 intron CG42342 + chr3R 16520640 intron CG42342 + chr3R 16520698 intron CG42342 + chr3R_11_16520001 chr3R_16520001 RAL-639 1327 chr3R 16563681 16563710 chr3R 16563760 16563788 19 79 4.0 5.0 4.5 3.5 107 chr3R 16563681 intron CG42342 + chr3R 16563734 intron CG42342 + chr3R 16563788 intron CG42342 + chr3R_19_16560001 chr3R_16560001 RAL-639 1328 chr3R 16735852 16735879 chr3R 16736013 16736043 9 165 1.0 4.0 2.5 2.6 191 chr3R 16735852 intergenic not near genes chr3R 16735948 intergenic not near genes chr3R 16736043 intergenic not near genes chr3R_9_16735001 chr3R_16735001 RAL-639 1329 chr3R 16756320 16756343 chr3R 16762511 16762533 diver 5 6191 4.0 0.5 2.2 1.6 6213 chr3R 16756320 intron bxd - chr3R 16759426 intron bxd - chr3R 16762533 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-639 1330 chr3R 16797440 16797472 chr3R 16797550 16797582 7 110 1.0 1.5 1.2 3.2 142 chr3R 16797440 intergenic not near genes chr3R 16797511 intergenic not near genes chr3R 16797582 intergenic not near genes chr3R_7_16795001 chr3R_16795001 RAL-639 1331 chr3R 17121522 17121548 chr3R 17121716 17121741 6 194 3.0 1.0 2.0 2.0 219 chr3R 17121522 intron cher - chr3R 17121632 intron,exon cher -,CG42779 + chr3R 17121741 intron,exon cher -,CG42779 + chr3R_6_17120001 chr3R_17120001 RAL-639 1332 chr3R 17268677 17268699 chr3R 17268799 17268820 7 121 2.0 1.5 1.8 2.5 143 chr3R 17268677 intergenic not near genes chr3R 17268748 intergenic not near genes chr3R 17268820 intergenic not near genes chr3R_7_17265001 chr3R_17265001 RAL-639 1333 chr3R 17290451 17290470 chr3R 17290537 17290550 5 85 1.0 3.5 2.2 1.6 99 chr3R 17290451 intergenic not near genes chr3R 17290500 intergenic not near genes chr3R 17290550 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-639 1334 chr3R 17294665 17294678 chr3R 17295093 17295106 BS 4 428 3.5 0.0 1.8 1.4 441 chr3R 17294665 intergenic not near genes chr3R 17294886 intergenic not near genes chr3R 17295106 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-639 1335 chr3R 17346699 17346710 chr3R 17348262 17348273 F-element 4 1563 1.5 2.5 2.0 1.3 1574 chr3R 17346699 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348273 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-639 1336 chr3R 17355503 17355514 chr3R 17355580 17355592 7 77 3.0 2.5 2.8 1.8 89 chr3R 17355503 intron beat-IIa - chr3R 17355548 intron beat-IIa - chr3R 17355592 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-639 1337 chr3R 17359032 17359058 chr3R 17359109 17359135 4 77 2.0 2.0 2.0 1.3 103 chr3R 17359032 intron beat-IIa - chr3R 17359084 intron beat-IIa - chr3R 17359135 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-639 1338 chr3R 17394449 17394456 chr3R 17394613 17394620 4 164 2.0 5.0 3.5 0.9 171 chr3R 17394449 intron CREG - chr3R 17394534 intron CREG - chr3R 17394620 5` UTR CREG - chr3R_4_17390001 chr3R_17390001 RAL-639 1339 chr3R 17452669 17452691 chr3R 17452745 17452767 9 76 1.5 1.0 1.2 4.1 98 chr3R 17452669 intergenic not near genes chr3R 17452718 intergenic not near genes chr3R 17452767 intergenic not near genes chr3R_9_17450001 chr3R_17450001 RAL-639 1340 chr3R 17587212 17587243 chr3R 17587395 17587426 11 181 2.5 1.0 1.8 3.9 214 chr3R 17587212 intergenic not near genes chr3R 17587319 intergenic not near genes chr3R 17587426 intergenic not near genes chr3R_11_17585001 chr3R_17585001 RAL-639 1341 chr3R 17591285 17591314 chr3R 17591721 17591725 F-element 4 430 3.0 1.5 2.2 1.2 440 chr3R 17591285 intergenic not near genes chr3R 17591505 intergenic not near genes chr3R 17591725 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-639 1342 chr3R 17723310 17723345 chr3R 17723392 17723428 11 83 1.0 1.5 1.2 5.0 118 chr3R 17723310 intergenic Pxt + chr3R 17723369 intergenic Pxt + chr3R 17723428 intergenic Pxt + chr3R_11_17720001 chr3R_17720001 RAL-639 1343 chr3R 17814765 17814789 chr3R 17814850 17814874 7 85 4.0 3.0 3.5 1.6 109 chr3R 17814765 intron tinc + chr3R 17814820 intron tinc + chr3R 17814874 intron tinc + chr3R_7_17810001 chr3R_17810001 RAL-639 1344 chr3R 17823208 17823230 chr3R 17823293 17823315 6 85 0.5 1.5 1.0 3.0 107 chr3R 17823208 intron tinc + chr3R 17823262 intron tinc + chr3R 17823315 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-639 1345 chr3R 17881890 17881901 chr3R 17881982 17881994 6 92 4.0 0.0 2.0 2.0 104 chr3R 17881890 exon Rim - chr3R 17881942 intron Rim - chr3R 17881994 intron Rim - chr3R_6_17880001 chr3R_17880001 RAL-639 1346 chr3R 17925852 17925888 chr3R 17927319 17927355 hobo 12 1466 4.5 4.5 4.5 2.2 1503 chr3R 17925852 intron cpo + chr3R 17926604 intron cpo + chr3R 17927355 intron cpo + chr3R_12_17925001 chr3R_17925001 RAL-639 1347 chr3R 18032784 18032805 chr3R 18040452 18040473 opus 6 7668 0.0 0.0 0.0 6.0 7689 chr3R 18032784 intergenic not near genes chr3R 18036628 intergenic not near genes chr3R 18040473 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-639 1348 chr3R 18041753 18041774 chr3R 18041830 18041851 7 76 0.0 0.5 0.2 5.8 98 chr3R 18041753 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_7_18040001 chr3R_18040001 RAL-639 1349 chr3R 18107131 18107138 chr3R 18107214 18107221 4 83 0.0 2.0 1.0 2.0 90 chr3R 18107131 intron sr + chr3R 18107176 intron sr + chr3R 18107221 intron sr + chr3R_4_18105001 chr3R_18105001 RAL-639 1350 chr3R 18206541 18206559 chr3R 18206651 18206669 8 110 2.0 0.0 1.0 4.0 128 chr3R 18206541 intron CG7985 + chr3R 18206605 intron CG7985 + chr3R 18206669 intron CG7985 + chr3R_8_18205001 chr3R_18205001 RAL-639 1351 chr3R 18268996 18269021 chr3R 18269131 18269156 6 135 2.0 2.5 2.2 1.9 160 chr3R 18268996 intron CG18599 + chr3R 18269076 intron CG18599 + chr3R 18269156 intron CG18599 + chr3R_6_18265001 chr3R_18265001 RAL-639 1352 chr3R 18339001 18339028 chr3R 18339104 18339132 10 104 0.0 1.0 0.5 6.7 131 chr3R 18339001 intron CG15803 - chr3R 18339066 intron CG15803 - chr3R 18339132 intron CG15803 - chr3R_10_18335001 chr3R_18335001 RAL-639 1353 chr3R 18342016 18342043 chr3R 18342093 18342120 9 73 0.5 2.0 1.2 4.1 104 chr3R 18342016 intron CG15803 - chr3R 18342068 intron CG15803 - chr3R 18342120 intron CG15803 - chr3R_9_18340001 chr3R_18340001 RAL-639 1354 chr3R 18501590 18501621 chr3R 18501671 18501702 7 81 3.5 1.0 2.2 2.2 112 chr3R 18501590 intron fru - chr3R 18501646 intron fru - chr3R 18501702 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-639 1355 chr3R 18606508 18606532 chr3R 18610738 18610764 F-element 8 4231 0.5 4.5 2.5 2.3 4256 chr3R 18606508 intron,intron qin +,CG14304 - chr3R 18608636 intron,intron qin +,CG14304 - chr3R 18610764 intron,intron qin +,CG14304 - chr3R_8_18605001 chr3R_18605001 RAL-639 1356 chr3R 18618266 18618297 chr3R 18618351 18618382 5 85 0.5 0.5 0.5 3.3 116 chr3R 18618266 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618382 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-639 1357 chr3R 18730026 18730038 chr3R 18730102 18730114 8 76 2.5 4.5 3.5 1.8 88 chr3R 18730026 intron Cha + chr3R 18730070 intron Cha + chr3R 18730114 exon Cha + chr3R_8_18730001 chr3R_18730001 RAL-639 1358 chr3R 18770293 18770318 chr3R 18770375 18770400 8 82 1.5 1.0 1.2 3.6 107 chr3R 18770293 intron CG7720 - chr3R 18770346 intron CG7720 - chr3R 18770400 intron CG7720 - chr3R_8_18770001 chr3R_18770001 RAL-639 1359 chr3R 18781694 18781719 chr3R 18781770 18781795 4 76 1.5 3.0 2.2 1.2 101 chr3R 18781694 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781795 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-639 1360 chr3R 18791506 18791519 chr3R 18791584 18791598 5 79 3.0 1.5 2.2 1.6 92 chr3R 18791506 intron CG7720 - chr3R 18791552 intron CG7720 - chr3R 18791598 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-639 1361 chr3R 18808474 18808501 chr3R 18808550 18808572 4 75 1.5 4.0 2.8 1.1 98 chr3R 18808474 intron CG18208 - chr3R 18808523 intron CG18208 - chr3R 18808572 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-639 1362 chr3R 18812080 18812108 chr3R 18812158 18812186 13 78 2.5 3.5 3.0 3.2 106 chr3R 18812080 intron CG18208 - chr3R 18812133 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-639 1363 chr3R 18839815 18839831 chr3R 18839898 18839913 7 83 2.5 2.5 2.5 2.0 98 chr3R 18839815 intron CG18208 - chr3R 18839864 intron CG18208 - chr3R 18839913 intron CG18208 - chr3R_7_18835001 chr3R_18835001 RAL-639 1364 chr3R 18856337 18856372 chr3R 18856626 18856642 9 287 1.0 2.5 1.8 3.2 305 chr3R 18856337 intergenic not near genes chr3R 18856490 intergenic not near genes chr3R 18856642 intergenic not near genes chr3R_9_18855001 chr3R_18855001 RAL-639 1365 chr3R 18891811 18891842 chr3R 18891894 18891925 7 83 1.5 1.5 1.5 2.8 114 chr3R 18891811 intergenic not near genes chr3R 18891868 intergenic not near genes chr3R 18891925 intergenic not near genes chr3R_7_18890001 chr3R_18890001 RAL-639 1366 chr3R 18932561 18932574 chr3R 18932730 18932746 5 172 3.5 2.0 2.8 1.3 185 chr3R 18932561 intron CG42613 + chr3R 18932654 intron CG42613 + chr3R 18932746 intron CG42613 + chr3R_5_18930001 chr3R_18930001 RAL-639 1367 chr3R 19201279 19201307 chr3R 19201366 19201394 11 87 1.0 3.5 2.2 3.4 115 chr3R 19201279 intergenic CG31475 + chr3R 19201336 intergenic CG31475 + chr3R 19201394 intergenic CG31475 + chr3R_11_19200001 chr3R_19200001 RAL-639 1368 chr3R 19276931 19276947 chr3R 19277011 19277027 8 80 2.5 1.5 2.0 2.7 96 chr3R 19276931 intergenic not near genes chr3R 19276979 intergenic not near genes chr3R 19277027 intergenic not near genes chr3R_8_19275001 chr3R_19275001 RAL-639 1369 chr3R 19344672 19344695 chr3R 19344807 19344830 4 135 0.5 2.5 1.5 1.6 158 chr3R 19344672 intergenic not near genes chr3R 19344751 intergenic not near genes chr3R 19344830 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-639 1370 chr3R 19602578 19602600 chr3R 19602658 19602678 9 80 2.5 1.0 1.8 3.2 100 chr3R 19602578 exon CG7333 + chr3R 19602628 3` UTR CG7333 + chr3R 19602678 intergenic CG7333 + chr3R_9_19600001 chr3R_19600001 RAL-639 1371 chr3R 19793892 19793928 chr3R 19793985 19794021 6 93 1.5 4.0 2.8 1.6 129 chr3R 19793892 intergenic bnl - chr3R 19793956 intergenic bnl - chr3R 19794021 intergenic bnl - chr3R_6_19790001 chr3R_19790001 RAL-639 1372 chr3R 19908280 19908299 chr3R 19908363 19908383 5 84 0.0 2.0 1.0 2.5 103 chr3R 19908280 intron RhoGAP92B + chr3R 19908332 intron RhoGAP92B + chr3R 19908383 intron RhoGAP92B + chr3R_5_19905001 chr3R_19905001 RAL-639 1373 chr3R 19989841 19989876 chr3R 19989921 19989955 4 76 2.5 1.5 2.0 1.3 114 chr3R 19989841 intron Hs6st - chr3R 19989898 intron Hs6st - chr3R 19989955 intron Hs6st - chr3R_4_19985001 chr3R_19985001 RAL-639 1374 chr3R 20008821 20008847 chr3R 20008902 20008928 7 80 1.0 2.5 1.8 2.5 107 chr3R 20008821 intergenic MED25 +,Hs6st - chr3R 20008874 intergenic MED25 +,Hs6st - chr3R 20008928 intergenic MED25 +,Hs6st - chr3R_7_20005001 chr3R_20005001 RAL-639 1375 chr3R 20039777 20039802 chr3R 20040176 20040201 9 399 3.0 1.0 2.0 3.0 424 chr3R 20039777 intron CG17193 - chr3R 20039989 intron CG17193 - chr3R 20040201 intron CG17193 - chr3R_9_20035001 chr3R_20035001 RAL-639 1376 chr3R 20109541 20109568 chr3R 20114747 20114774 copia 6 5206 1.0 3.0 2.0 2.0 5233 chr3R 20109541 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-639 1377 chr3R 20156697 20156719 chr3R 20165867 20165889 roo 9 9170 2.5 1.5 2.0 3.0 9192 chr3R 20156697 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165889 intergenic not near genes chr3R_9_20160001 chr3R_20160001 RAL-639 1378 chr3R 20209805 20209834 chr3R 20209888 20209920 5 85 4.0 1.0 2.5 1.4 115 chr3R 20209805 intron Nlg4 + chr3R 20209862 intron Nlg4 + chr3R 20209920 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-639 1379 chr3R 20266516 20266539 chr3R 20272987 20273010 Burdock 12 6471 3.0 1.0 2.0 4.0 6494 chr3R 20266516 intron cic + chr3R 20269763 intron cic + chr3R 20273010 intron cic + chr3R_12_20265001 chr3R_20265001 RAL-639 1380 chr3R 20282277 20282297 chr3R 20282353 20282373 4 76 1.0 2.0 1.5 1.6 96 chr3R 20282277 intron cic + chr3R 20282325 intron cic + chr3R 20282373 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-639 1381 chr3R 20331002 20331021 chr3R 20331488 20331507 roo 5 486 1.5 2.0 1.8 1.8 505 chr3R 20331002 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331507 intergenic not near genes chr3R_5_20330001 chr3R_20330001 RAL-639 1382 chr3R 20406483 20406519 chr3R 20406582 20406618 4 99 0.0 0.0 0.0 4.0 135 chr3R 20406483 intron Gfrl - chr3R 20406550 intron Gfrl - chr3R 20406618 intron,3` UTR Gfrl -,CG4335 - chr3R_4_20405001 chr3R_20405001 RAL-639 1383 chr3R 20434842 20434857 chr3R 20435027 20435042 4 185 1.5 0.5 1.0 2.0 200 chr3R 20434842 intron Gfrl - chr3R 20434942 intron Gfrl - chr3R 20435042 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-639 1384 chr3R 20506591 20506614 chr3R 20507393 20507417 BS 5 803 5.0 5.0 5.0 0.8 826 chr3R 20506591 intergenic Or92a + chr3R 20507004 intergenic CG4288 - chr3R 20507417 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-639 1385 chr3R 20686965 20686983 chr3R 20687400 20687418 6 435 3.0 0.0 1.5 2.4 453 chr3R 20686965 intergenic not near genes chr3R 20687192 intergenic not near genes chr3R 20687418 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-639 1386 chr3R 20703480 20703512 chr3R 20703874 20703906 5 394 1.5 1.5 1.5 2.0 426 chr3R 20703480 intron Oamb - chr3R 20703693 intron Oamb - chr3R 20703906 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-639 1387 chr3R 20769580 20769600 chr3R 20769706 20769726 6 126 0.5 0.0 0.2 5.0 146 chr3R 20769580 intron Syp + chr3R 20769653 intron Syp + chr3R 20769726 intron Syp + chr3R_6_20765001 chr3R_20765001 RAL-639 1388 chr3R 20901349 20901374 chr3R 20901431 20901438 11 83 4.0 2.5 3.2 2.6 89 chr3R 20901349 intergenic not near genes chr3R 20901394 intergenic not near genes chr3R 20901438 intergenic not near genes chr3R_11_20900001 chr3R_20900001 RAL-639 1389 chr3R 21014007 21014040 chr3R 21014085 21014118 10 78 2.0 1.5 1.8 3.6 111 chr3R 21014007 3` UTR Calx + chr3R 21014062 3` UTR Calx + chr3R 21014118 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-639 1390 chr3R 21108042 21108066 chr3R 21108303 21108327 5 261 1.0 0.5 0.8 2.8 285 chr3R 21108042 intergenic Sec15 -,rtet + chr3R 21108184 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_5_21105001 chr3R_21105001 RAL-639 1391 chr3R 21124901 21124920 chr3R 21125060 21125082 6 161 0.5 0.0 0.2 5.0 181 chr3R 21124901 intron slmb - chr3R 21124992 intron slmb - chr3R 21125082 intron slmb - chr3R_6_21120001 chr3R_21120001 RAL-639 1392 chr3R 21132632 21132638 chr3R 21132715 21132721 5 82 2.0 1.0 1.5 2.0 89 chr3R 21132632 3` UTR Ice2 + chr3R 21132676 3` UTR Ice2 + chr3R 21132721 intergenic Ice2 +,CG7009 - chr3R_5_21130001 chr3R_21130001 RAL-639 1393 chr3R 21141673 21141705 chr3R 21150154 21150186 Tirant 7 8477 1.5 2.0 1.8 2.5 8513 chr3R 21141673 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-639 1394 chr3R 21150813 21150837 chr3R 21150948 21150972 5 135 1.5 2.5 2.0 1.7 159 chr3R 21150813 intron SNF4Agamma + chr3R 21150892 intron SNF4Agamma + chr3R 21150972 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-639 1395 chr3R 21154570 21154587 chr3R 21154785 21154802 6 214 4.0 1.5 2.8 1.6 232 chr3R 21154570 intron SNF4Agamma + chr3R 21154686 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-639 1396 chr3R 21239808 21239954 chr3R 21239902 21240030 6 82 0.0 0.0 0.0 6.0 222 chr3R 21239808 intergenic not near genes chr3R 21239919 intergenic not near genes chr3R 21240030 intergenic not near genes chr3R_6_21235001 chr3R_21235001 RAL-639 1397 chr3R 21322974 21323006 chr3R 21323052 21323057 9 75 3.0 0.0 1.5 3.6 83 chr3R 21322974 intron CG16791 - chr3R 21323016 intron CG16791 - chr3R 21323057 intron CG16791 - chr3R_9_21320001 chr3R_21320001 RAL-639 1398 chr3R 21472013 21472033 chr3R 21472094 21472114 8 81 3.0 3.5 3.2 1.9 101 chr3R 21472013 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_8_21470001 chr3R_21470001 RAL-639 1399 chr3R 21761119 21761150 chr3R 21768511 21768514 mdg1 11 7386 4.0 4.0 4.0 2.2 7395 chr3R 21761119 exon CG42335 + chr3R 21764816 intron CG42335 + chr3R 21768514 intron CG42335 + chr3R_11_21760001 chr3R_21760001 RAL-639 1400 chr3R 21784860 21784879 chr3R 21784957 21784976 5 97 2.5 0.0 1.2 2.3 116 chr3R 21784860 3` UTR,3` UTR CASK -,CRG - chr3R 21784918 3` UTR,3` UTR CASK -,CRG - chr3R 21784976 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-639 1401 chr3R 21800503 21800520 chr3R 21800588 21800604 4 84 3.5 6.0 4.8 0.7 101 chr3R 21800503 intron CASK - chr3R 21800554 intron CASK - chr3R 21800604 intron CASK - chr3R_4_21800001 chr3R_21800001 RAL-639 1402 chr3R 21907534 21907534 chr3R 28831801 28831804 19 6924268 21.0 15.5 18.2 1.0 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-639 1403 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 7.5 21.0 14.2 0.3 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-639 1404 chr3R 21907535 21907535 chr3R 28831801 28831802 36 6924266 21.0 15.5 18.2 1.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_36_25365001 chr3R_25365001 RAL-639 1405 chr3R 21907536 21907536 chr3R 28831801 28831802 39 6924266 21.0 15.5 18.2 2.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-639 1406 chr3R 22108361 22108391 chr3R 22108593 22108605 7 226 1.0 3.5 2.2 2.2 244 chr3R 22108361 intron CG5778 - chr3R 22108483 intron CG5778 - chr3R 22108605 intron CG5778 - chr3R_7_22105001 chr3R_22105001 RAL-639 1407 chr3R 22142216 22142228 chr3R 22142294 22142306 5 78 0.5 1.5 1.0 2.5 90 chr3R 22142216 5` UTR SKIP + chr3R 22142261 intron SKIP + chr3R 22142306 intron SKIP + chr3R_5_22140001 chr3R_22140001 RAL-639 1408 chr3R 22155901 22155929 chr3R 22156125 22156153 8 224 1.0 2.5 1.8 2.9 252 chr3R 22155901 intron SKIP + chr3R 22156027 intron SKIP + chr3R 22156153 intron SKIP + chr3R_8_22155001 chr3R_22155001 RAL-639 1409 chr3R 22234682 22234710 chr3R 22236001 22236029 pogo 8 1319 3.0 2.0 2.5 2.3 1347 chr3R 22234682 intron SKIP + chr3R 22235356 intron SKIP + chr3R 22236029 intron SKIP + chr3R_8_22235001 chr3R_22235001 RAL-639 1410 chr3R 22239489 22239501 chr3R 22248549 22248561 roo 5 9060 2.5 0.0 1.2 2.3 9072 chr3R 22239489 intron SKIP + chr3R 22244025 intron SKIP + chr3R 22248561 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-639 1411 chr3R 22286144 22286164 chr3R 22286221 22286241 6 76 1.5 1.0 1.2 2.7 97 chr3R 22286144 intron SKIP + chr3R 22286192 intron SKIP + chr3R 22286241 intron SKIP + chr3R_6_22285001 chr3R_22285001 RAL-639 1412 chr3R 22295044 22295061 chr3R 22295129 22295148 6 86 3.5 2.5 3.0 1.5 104 chr3R 22295044 3` UTR SKIP + chr3R 22295096 3` UTR SKIP + chr3R 22295148 3` UTR SKIP + chr3R_6_22295001 chr3R_22295001 RAL-639 1413 chr3R 22336095 22336122 chr3R 22336189 22336216 6 94 3.0 1.0 2.0 2.0 121 chr3R 22336095 intron CG5388 - chr3R 22336156 intron CG5388 - chr3R 22336216 intron CG5388 - chr3R_6_22335001 chr3R_22335001 RAL-639 1414 chr3R 22401038 22401062 chr3R 22401120 22401144 4 82 1.5 2.5 2.0 1.3 106 chr3R 22401038 intergenic not near genes chr3R 22401091 intergenic not near genes chr3R 22401144 intergenic not near genes chr3R_4_22400001 chr3R_22400001 RAL-639 1415 chr3R 22450544 22450554 chr3R 22453183 22453194 NOF 8 2639 5.5 2.5 4.0 1.6 2650 chr3R 22450544 intron CG34376 + chr3R 22451869 intron CG34376 + chr3R 22453194 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-639 1416 chr3R 22450561 22450578 chr3R 22453182 22453218 NOF 4 2634 1.5 2.5 2.0 1.3 2657 chr3R 22450561 intron CG34376 + chr3R 22451890 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-639 1417 chr3R 22642769 22642800 chr3R 22643077 22643107 8 306 4.5 1.5 3.0 2.0 338 chr3R 22642769 intron wake + chr3R 22642938 intron wake + chr3R 22643107 intron wake + chr3R_8_22640001 chr3R_22640001 RAL-639 1418 chr3R 22758494 22758521 chr3R 22758736 22758762 8 241 2.0 6.5 4.2 1.5 268 chr3R 22758494 intron,intron CG7029 +,Usp12-46 + chr3R 22758628 intron,intron CG7029 +,Usp12-46 + chr3R 22758762 intron,intron CG7029 +,Usp12-46 + chr3R_8_22755001 chr3R_22755001 RAL-639 1419 chr3R 22794517 22794551 chr3R 22794593 22794627 14 75 3.5 4.0 3.8 2.9 110 chr3R 22794517 intergenic CG7029 + chr3R 22794572 intergenic not near genes chr3R 22794627 intergenic not near genes chr3R_14_22790001 chr3R_22790001 RAL-639 1420 chr3R 22827417 22827442 chr3R 22827493 22827517 7 76 3.0 4.0 3.5 1.6 100 chr3R 22827417 intergenic CR44350 - chr3R 22827467 intergenic CR44350 - chr3R 22827517 intergenic CR44350 - chr3R_7_22825001 chr3R_22825001 RAL-639 1421 chr3R 22860156 22860170 chr3R 22860247 22860262 9 92 1.5 3.0 2.2 2.8 106 chr3R 22860156 intergenic not near genes chr3R 22860209 intergenic not near genes chr3R 22860262 intergenic not near genes chr3R_9_22860001 chr3R_22860001 RAL-639 1422 chr3R 22889014 22889047 chr3R 22889090 22889124 11 77 3.0 1.0 2.0 3.7 110 chr3R 22889014 intergenic not near genes chr3R 22889069 intergenic not near genes chr3R 22889124 intergenic not near genes chr3R_11_22885001 chr3R_22885001 RAL-639 1423 chr3R 22919157 22919189 chr3R 22919254 22919279 16 95 3.5 2.5 3.0 4.0 122 chr3R 22919157 intron klg + chr3R 22919218 intron klg + chr3R 22919279 intron klg + chr3R_16_22915001 chr3R_22915001 RAL-639 1424 chr3R 22927705 22927720 chr3R 22927789 22927797 6 82 3.0 4.5 3.8 1.2 92 chr3R 22927705 intron klg + chr3R 22927751 intron klg + chr3R 22927797 intron klg + chr3R_6_22925001 chr3R_22925001 RAL-639 1425 chr3R 23090403 23090437 chr3R 23090486 23090520 8 82 1.0 2.0 1.5 3.2 117 chr3R 23090403 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090520 intron CG13830 - chr3R_8_23090001 chr3R_23090001 RAL-639 1426 chr3R 23152515 23152538 chr3R 23152594 23152599 5 76 1.5 2.0 1.8 1.8 84 chr3R 23152515 3` UTR unk - chr3R 23152557 3` UTR unk - chr3R 23152599 3` UTR unk - chr3R_5_23150001 chr3R_23150001 RAL-639 1427 chr3R 23338898 23338912 chr3R 23338972 23338988 4 76 5.0 3.5 4.2 0.8 90 chr3R 23338898 intron pnt - chr3R 23338943 intron pnt - chr3R 23338988 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-639 1428 chr3R 23543305 23543336 chr3R 23543382 23543413 8 77 1.0 1.5 1.2 3.6 108 chr3R 23543305 intergenic not near genes chr3R 23543359 intergenic not near genes chr3R 23543413 intergenic not near genes chr3R_8_23540001 chr3R_23540001 RAL-639 1429 chr3R 23556307 23556338 chr3R 23556409 23556424 9 101 1.0 0.5 0.8 5.0 117 chr3R 23556307 5` UTR CG10164 - chr3R 23556366 5` UTR CG10164 - chr3R 23556424 5` UTR CG10164 - chr3R_9_23555001 chr3R_23555001 RAL-639 1430 chr3R 23558398 23558427 chr3R 23560179 23560208 Bari1 6 1781 2.5 3.0 2.8 1.6 1810 chr3R 23558398 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-639 1431 chr3R 23564445 23564468 chr3R 23564589 23564612 9 144 2.5 4.0 3.2 2.1 167 chr3R 23564445 intron beat-IV + chr3R 23564528 intron beat-IV + chr3R 23564612 intron beat-IV + chr3R_9_23560001 chr3R_23560001 RAL-639 1432 chr3R 23572758 23572781 chr3R 23572875 23572901 6 119 1.5 1.5 1.5 2.4 143 chr3R 23572758 intron beat-IV + chr3R 23572830 intron beat-IV + chr3R 23572901 intron beat-IV + chr3R_6_23570001 chr3R_23570001 RAL-639 1433 chr3R 23629447 23629475 chr3R 23629523 23629551 17 75 2.0 4.5 3.2 4.0 104 chr3R 23629447 intron CG31145 - chr3R 23629499 intron CG31145 - chr3R 23629551 intron CG31145 - chr3R_17_23625001 chr3R_23625001 RAL-639 1434 chr3R 23684710 23684713 chr3R 23685191 23685198 roo 4 483 5.0 6.0 5.5 0.6 488 chr3R 23684710 intron CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685198 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-639 1435 chr3R 23888087 23888116 chr3R 23888173 23888201 9 86 1.5 2.0 1.8 3.2 114 chr3R 23888087 intron Pli - chr3R 23888144 intron Pli - chr3R 23888201 intron Pli - chr3R_9_23885001 chr3R_23885001 RAL-639 1436 chr3R 23949040 23949075 chr3R 23949117 23949152 11 77 2.0 0.0 1.0 5.5 112 chr3R 23949040 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949152 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-639 1437 chr3R 24011671 24011680 chr3R 24011753 24011763 4 83 0.5 0.5 0.5 2.7 92 chr3R 24011671 intron KrT95D - chr3R 24011717 intron KrT95D - chr3R 24011763 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-639 1438 chr3R 24076917 24076944 chr3R 24078384 24078411 hobo 5 1467 4.5 3.0 3.8 1.0 1494 chr3R 24076917 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078411 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-639 1439 chr3R 24100312 24100482 chr3R 24100387 24100577 10 91 1.5 3.0 2.2 3.1 265 chr3R 24100312 intron 4EHP - chr3R 24100444 intron 4EHP - chr3R 24100577 intron 4EHP - chr3R_10_24100001 chr3R_24100001 RAL-639 1440 chr3R 24207216 24207245 chr3R 24212292 24212321 flea 9 5076 3.5 4.0 3.8 1.9 5105 chr3R 24207216 intron twin - chr3R 24209768 intron twin - chr3R 24212321 intron twin - chr3R_9_24205001 chr3R_24205001 RAL-639 1441 chr3R 24295962 24295984 chr3R 24296078 24296092 10 116 3.0 5.0 4.0 2.0 130 chr3R 24295962 intron crb + chr3R 24296027 intron crb + chr3R 24296092 intron crb + chr3R_10_24295001 chr3R_24295001 RAL-639 1442 chr3R 24304007 24304039 chr3R 24304087 24304119 6 80 2.0 2.5 2.2 1.9 112 chr3R 24304007 intron crb + chr3R 24304063 intron crb + chr3R 24304119 intron crb + chr3R_6_24300001 chr3R_24300001 RAL-639 1443 chr3R 24431601 24431622 chr3R 24431678 24431701 4 78 2.5 1.5 2.0 1.3 100 chr3R 24431601 intron nAChRalpha1 - chr3R 24431651 intron nAChRalpha1 - chr3R 24431701 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-639 1444 chr3R 24434243 24434271 chr3R 24434321 24434349 9 78 1.0 1.5 1.2 4.1 106 chr3R 24434243 intron nAChRalpha1 - chr3R 24434296 intron nAChRalpha1 - chr3R 24434349 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-639 1445 chr3R 24493277 24493310 chr3R 24493506 24493539 BS 5 229 1.5 3.5 2.5 1.4 262 chr3R 24493277 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-639 1446 chr3R 24667605 24667616 chr3R 24667682 24667693 6 77 3.0 0.0 1.5 2.4 88 chr3R 24667605 intron slo + chr3R 24667649 intron slo + chr3R 24667693 intron slo + chr3R_6_24665001 chr3R_24665001 RAL-639 1447 chr3R 24927123 24927154 chr3R 24931913 24931944 Doc 6 4790 1.0 4.0 2.5 1.7 4821 chr3R 24927123 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931944 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-639 1448 chr3R 25004900 25004921 chr3R 25004983 25005004 7 83 0.0 2.0 1.0 3.5 104 chr3R 25004900 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-639 1449 chr3R 25027550 25027569 chr3R 25027763 25027780 6 213 3.0 4.5 3.8 1.2 230 chr3R 25027550 intron Hr96 + chr3R 25027665 intron Hr96 + chr3R 25027780 intron Hr96 + chr3R_6_25025001 chr3R_25025001 RAL-639 1450 chr3R 25082323 25082332 chr3R 25082405 25082414 4 82 2.5 0.5 1.5 1.6 91 chr3R 25082323 intergenic fd96Ca + chr3R 25082368 intergenic fd96Ca + chr3R 25082414 intergenic fd96Ca + chr3R_4_25080001 chr3R_25080001 RAL-639 1451 chr3R 25082333 25082358 chr3R 25082404 25082439 7 80 0.5 0.5 0.5 4.7 106 chr3R 25082333 intergenic fd96Ca + chr3R 25082386 intergenic fd96Ca + chr3R 25082439 intergenic fd96Ca + chr3R_7_25080001 chr3R_25080001 RAL-639 1452 chr3R 25136398 25136429 chr3R 25136478 25136509 7 80 1.0 2.0 1.5 2.8 111 chr3R 25136398 3` UTR Bili + chr3R 25136454 3` UTR Bili + chr3R 25136509 3` UTR Bili + chr3R_7_25135001 chr3R_25135001 RAL-639 1453 chr3R 25209597 25209628 chr3R 25209679 25209709 6 82 3.0 2.0 2.5 1.7 112 chr3R 25209597 intron CG13654 + chr3R 25209653 intron CG13654 + chr3R 25209709 intron CG13654 + chr3R_6_25205001 chr3R_25205001 RAL-639 1454 chr3R 25368476 25368500 chr3R 25368594 25368618 4 118 1.5 0.0 0.8 2.2 142 chr3R 25368476 intron Fur1 - chr3R 25368547 intron Fur1 - chr3R 25368618 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-639 1455 chr3R 25588076 25588104 chr3R 25588149 25588182 11 76 2.0 0.0 1.0 5.5 106 chr3R 25588076 intron msi + chr3R 25588129 intron msi + chr3R 25588182 intron msi + chr3R_11_25585001 chr3R_25585001 RAL-639 1456 chr3R 25689127 25689153 chr3R 25689235 25689261 11 108 4.0 3.0 3.5 2.4 134 chr3R 25689127 intergenic not near genes chr3R 25689194 intergenic not near genes chr3R 25689261 intergenic not near genes chr3R_11_25685001 chr3R_25685001 RAL-639 1457 chr3R 25832692 25832707 chr3R 25841874 25841889 roo 4 9182 8.5 5.5 7.0 0.5 9197 chr3R 25832692 exon alpha4GT2 + chr3R 25837290 intron alpha4GT2 + chr3R 25841889 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-639 1458 chr3R 25832709 25832718 chr3R 25841871 25841900 roo 4 9177 7.0 5.5 6.2 0.6 9191 chr3R 25832709 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-639 1459 chr3R 25861827 25861850 chr3R 25861904 25861927 6 77 1.0 1.0 1.0 3.0 100 chr3R 25861827 intron CG5890 + chr3R 25861877 intron CG5890 + chr3R 25861927 intron CG5890 + chr3R_6_25860001 chr3R_25860001 RAL-639 1460 chr3R 25905906 25905935 chr3R 25906100 25906130 10 194 0.0 2.5 1.2 4.5 224 chr3R 25905906 intron CR43259 - chr3R 25906018 intron CR43259 - chr3R 25906130 3` UTR CR43259 - chr3R_10_25905001 chr3R_25905001 RAL-639 1461 chr3R 25927515 25927539 chr3R 25927594 25927621 5 81 2.0 2.5 2.2 1.6 106 chr3R 25927515 intron CCAP-R - chr3R 25927568 intron CCAP-R - chr3R 25927621 intron CCAP-R - chr3R_5_25925001 chr3R_25925001 RAL-639 1462 chr3R 25962053 25962081 chr3R 25962149 25962177 9 96 2.5 3.5 3.0 2.2 124 chr3R 25962053 intron boss + chr3R 25962115 intron boss + chr3R 25962177 intron boss + chr3R_9_25960001 chr3R_25960001 RAL-639 1463 chr3R 26140530 26140542 chr3R 26140626 26140655 4 99 1.0 3.5 2.2 1.2 125 chr3R 26140530 intergenic not near genes chr3R 26140592 intergenic not near genes chr3R 26140655 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-639 1464 chr3R 26144690 26144727 chr3R 26144768 26144805 4 78 2.0 1.5 1.8 1.4 115 chr3R 26144690 intergenic not near genes chr3R 26144748 intergenic not near genes chr3R 26144805 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-639 1465 chr3R 26155423 26155451 chr3R 26155507 26155535 4 84 0.0 2.5 1.2 1.8 112 chr3R 26155423 intergenic not near genes chr3R 26155479 intergenic not near genes chr3R 26155535 intergenic not near genes chr3R_4_26155001 chr3R_26155001 RAL-639 1466 chr3R 26206533 26206563 chr3R 26206621 26206652 11 89 1.0 3.5 2.2 3.4 119 chr3R 26206533 intron CR44320 + chr3R 26206592 intron CR44320 + chr3R 26206652 intron CR44320 + chr3R_11_26205001 chr3R_26205001 RAL-639 1467 chr3R 26235491 26235521 chr3R 26235572 26235585 7 78 1.0 4.5 2.8 1.8 94 chr3R 26235491 5` UTR CR42745 + chr3R 26235538 5` UTR CR42745 + chr3R 26235585 5` UTR CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-639 1468 chr3R 26239847 26239858 chr3R 26240157 26240169 6 310 2.5 1.5 2.0 2.0 322 chr3R 26239847 intron CR42745 + chr3R 26240008 intron CR42745 + chr3R 26240169 intron CR42745 + chr3R_6_26240001 chr3R_26240001 RAL-639 1469 chr3R 26265813 26265845 chr3R 26265901 26265932 9 87 2.0 4.0 3.0 2.2 119 chr3R 26265813 intron CG6154 + chr3R 26265872 intron CG6154 + chr3R 26265932 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-639 1470 chr3R 26292105 26292141 chr3R 26292185 26292221 8 80 1.0 3.0 2.0 2.7 116 chr3R 26292105 intergenic not near genes chr3R 26292163 intergenic not near genes chr3R 26292221 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-639 1471 chr3R 26294720 26294748 chr3R 26294798 26294826 9 78 1.0 2.5 1.8 3.2 106 chr3R 26294720 intergenic not near genes chr3R 26294773 intergenic not near genes chr3R 26294826 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-639 1472 chr3R 26325682 26325705 chr3R 26325770 26325793 10 86 6.0 3.0 4.5 1.8 111 chr3R 26325682 intron CG33970 + chr3R 26325738 intron CG33970 + chr3R 26325793 intron CG33970 + chr3R_10_26325001 chr3R_26325001 RAL-639 1473 chr3R 26342685 26342707 chr3R 26342828 26342850 5 143 2.0 1.0 1.5 2.0 165 chr3R 26342685 intron CG33970 + chr3R 26342768 intron CG33970 + chr3R 26342850 intron CG33970 + chr3R_5_26340001 chr3R_26340001 RAL-639 1474 chr3R 26365111 26365143 chr3R 26365196 26365227 5 85 0.5 1.0 0.8 2.8 116 chr3R 26365111 intergenic not near genes chr3R 26365169 intergenic not near genes chr3R 26365227 intergenic not near genes chr3R_5_26365001 chr3R_26365001 RAL-639 1475 chr3R 26376327 26376353 chr3R 26385487 26385512 roo 7 9159 2.0 0.0 1.0 3.5 9185 chr3R 26376327 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385512 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-639 1476 chr3R 26542059 26542063 chr3R 26542136 26542152 5 87 2.0 1.5 1.8 1.8 93 chr3R 26542059 intron scrib + chr3R 26542106 intron scrib + chr3R 26542152 intron scrib + chr3R_5_26540001 chr3R_26540001 RAL-639 1477 chr3R 26558327 26558349 chr3R 26565637 26565661 Stalker4 4 7312 1.5 1.0 1.2 1.8 7334 chr3R 26558327 intron scrib + chr3R 26561994 intron scrib + chr3R 26565661 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-639 1478 chr3R 26611348 26611375 chr3R 26611424 26611451 4 71 3.0 1.0 2.0 1.3 103 chr3R 26611348 intergenic not near genes chr3R 26611400 intergenic not near genes chr3R 26611451 intergenic not near genes chr3R_4_26610001 chr3R_26610001 RAL-639 1479 chr3R 26642730 26642762 chr3R 26643123 26643156 jockey 4 394 3.5 2.0 2.8 1.1 426 chr3R 26642730 intergenic not near genes chr3R 26642943 intergenic not near genes chr3R 26643156 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-639 1480 chr3R 26770240 26770270 chr3R 26770317 26770347 5 77 2.5 2.0 2.2 1.6 107 chr3R 26770240 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770347 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-639 1481 chr3R 26791471 26791490 chr3R 26791558 26791578 4 86 1.5 1.5 1.5 1.6 107 chr3R 26791471 intergenic not near genes chr3R 26791524 intergenic not near genes chr3R 26791578 intergenic not near genes chr3R_4_26790001 chr3R_26790001 RAL-639 1482 chr3R 26810074 26810091 chr3R 26810529 26810546 4 455 1.5 0.5 1.0 2.0 472 chr3R 26810074 intron Tl + chr3R 26810310 intron Tl + chr3R 26810546 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-639 1483 chr3R 26810568 26810580 chr3R 26811053 26811065 roo 5 485 0.5 5.0 2.8 1.3 497 chr3R 26810568 intron Tl + chr3R 26810816 intron Tl + chr3R 26811065 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-639 1484 chr3R 27007411 27007424 chr3R 27016546 27016558 roo 5 9134 2.5 1.5 2.0 1.7 9147 chr3R 27007411 intron RYa-R + chr3R 27011984 intron RYa-R + chr3R 27016558 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-639 1485 chr3R 27019509 27019544 chr3R 27019605 27019638 9 95 1.0 4.5 2.8 2.4 129 chr3R 27019509 intron,exon RYa-R +,CG17191 - chr3R 27019574 intron,exon RYa-R +,CG17191 - chr3R 27019638 intron,intron RYa-R +,CG17191 - chr3R_9_27015001 chr3R_27015001 RAL-639 1486 chr3R 27024249 27024271 chr3R 27024336 27024358 6 87 2.0 3.0 2.5 1.7 109 chr3R 27024249 intron RYa-R + chr3R 27024304 intron RYa-R + chr3R 27024358 intron RYa-R + chr3R_6_27020001 chr3R_27020001 RAL-639 1487 chr3R 27028731 27028752 chr3R 27028809 27028831 4 79 0.0 1.5 0.8 2.2 100 chr3R 27028731 intron RYa-R + chr3R 27028781 intron RYa-R + chr3R 27028831 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-639 1488 chr3R 27315993 27316004 chr3R 27316068 27316080 5 76 2.5 3.5 3.0 1.2 87 chr3R 27315993 intron CG3339 - chr3R 27316036 intron CG3339 - chr3R 27316080 intron CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-639 1489 chr3R 27329483 27329489 chr3R 27329560 27329566 4 77 2.0 2.5 2.2 1.2 83 chr3R 27329483 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329566 intergenic CG3330 - chr3R_4_27325001 chr3R_27325001 RAL-639 1490 chr3R 27342803 27342826 chr3R 27351384 27351407 Tirant 6 8581 1.5 5.0 3.2 1.4 8604 chr3R 27342803 intron CG42534 + chr3R 27347105 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-639 1491 chr3R 27354819 27354838 chr3R 27355209 27355228 10 390 1.5 2.0 1.8 3.6 409 chr3R 27354819 intron CG42534 + chr3R 27355024 intron CG42534 + chr3R 27355228 intron CG42534 + chr3R_10_27355001 chr3R_27355001 RAL-639 1492 chr3R 27377471 27377502 chr3R 27377559 27377587 7 86 4.0 1.0 2.5 2.0 116 chr3R 27377471 3` UTR side - chr3R 27377529 3` UTR side - chr3R 27377587 3` UTR side - chr3R_7_27375001 chr3R_27375001 RAL-639 1493 chr3R 27418703 27418712 chr3R 27418805 27418805 4 100 1.0 4.0 2.5 1.1 102 chr3R 27418703 5` UTR side - chr3R 27418754 5` UTR side - chr3R 27418805 5` UTR side - chr3R_4_27415001 chr3R_27415001 RAL-639 1494 chr3R 27447347 27447374 chr3R 27447476 27447499 8 129 0.0 2.0 1.0 4.0 152 chr3R 27447347 intergenic not near genes chr3R 27447423 intergenic not near genes chr3R 27447499 intergenic not near genes chr3R_8_27445001 chr3R_27445001 RAL-639 1495 chr3R 27449165 27449196 chr3R 27449244 27449275 5 79 3.0 3.0 3.0 1.2 110 chr3R 27449165 intergenic not near genes chr3R 27449220 intergenic not near genes chr3R 27449275 intergenic not near genes chr3R_5_27445001 chr3R_27445001 RAL-639 1496 chr3R 27492378 27492409 chr3R 27492465 27492496 6 86 1.5 1.0 1.2 2.7 118 chr3R 27492378 intergenic not near genes chr3R 27492437 intergenic not near genes chr3R 27492496 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-639 1497 chr3R 27627086 27627120 chr3R 27627188 27627222 13 99 2.5 3.5 3.0 3.2 136 chr3R 27627086 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627222 intron Tusp + chr3R_13_27625001 chr3R_27625001 RAL-639 1498 chr3R 27659566 27659586 chr3R 27659650 27659665 6 83 3.5 2.0 2.8 1.6 99 chr3R 27659566 intron Mlc1 - chr3R 27659616 intron Mlc1 - chr3R 27659665 intron Mlc1 - chr3R_6_27655001 chr3R_27655001 RAL-639 1499 chr3R 27706775 27706793 chr3R 27706852 27706870 6 77 3.5 0.0 1.8 2.1 95 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706822 intergenic CG12428 -,CG12877 + chr3R 27706870 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 RAL-639 1500 chr3R 27779272 27779290 chr3R 27779349 27779355 8 74 4.0 6.5 5.2 1.3 83 chr3R 27779272 exon CG34353 - chr3R 27779314 intron CG34353 - chr3R 27779355 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-639 1501 chr3R 27799936 27799963 chr3R 27800018 27800045 6 78 1.0 3.0 2.0 2.0 109 chr3R 27799936 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800045 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-639 1502 chr3R 27813826 27813842 chr3R 27813930 27813946 8 104 0.5 0.0 0.2 6.7 120 chr3R 27813826 intron CG34353 - chr3R 27813886 intron CG34353 - chr3R 27813946 intron CG34353 - chr3R_8_27810001 chr3R_27810001 RAL-639 1503 chr3R 27826593 27826619 chr3R 27826737 27826758 8 143 1.0 3.5 2.2 2.5 165 chr3R 27826593 intron CG34353 - chr3R 27826676 intron CG34353 - chr3R 27826758 intron CG34353 - chr3R_8_27825001 chr3R_27825001 RAL-639 1504 chr3R 27847637 27847647 chr3R 27847913 27847926 7 277 3.0 3.5 3.2 1.7 289 chr3R 27847637 intron CG34353 - chr3R 27847782 intron CG34353 - chr3R 27847926 intron CG34353 - chr3R_7_27845001 chr3R_27845001 RAL-639 1505 chr3R 27856759 27856791 chr3R 27858240 27858274 hopper2 9 1483 3.5 1.0 2.2 2.8 1515 chr3R 27856759 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858274 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-639 1506 chr3R 27862953 27862984 chr3R 27868258 27868289 Transpac 8 5304 2.0 3.5 2.8 2.1 5336 chr3R 27862953 intron CG34353 - chr3R 27865621 intron CG34353 - chr3R 27868289 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-639 1507 chr3R 27871056 27871084 chr3R 27871155 27871184 7 101 3.5 3.0 3.2 1.7 128 chr3R 27871056 intron CG34353 - chr3R 27871120 intron CG34353 - chr3R 27871184 intron CG34353 - chr3R_7_27870001 chr3R_27870001 RAL-639 1508 chr3R 27875711 27875726 chr3R 27882754 27882781 297 7 7052 6.0 0.5 3.2 1.7 7070 chr3R 27875711 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882781 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-639 1509 chr3R 28068501 28068513 chr3R 28073943 28073953 I-element 4 5441 2.5 2.5 2.5 1.1 5452 chr3R 28068501 intron CG34362 + chr3R 28071227 intron CG34362 + chr3R 28073953 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-639 1510 chr3R 28115523 28115541 chr3R 28115599 28115617 4 74 2.0 3.0 2.5 1.1 94 chr3R 28115523 intergenic not near genes chr3R 28115570 intergenic not near genes chr3R 28115617 intergenic not near genes chr3R_4_28115001 chr3R_28115001 RAL-639 1511 chr3R 28132504 28132515 chr3R 28132573 28132597 5 73 4.5 0.5 2.5 1.4 93 chr3R 28132504 intergenic not near genes chr3R 28132550 intergenic not near genes chr3R 28132597 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-639 1512 chr3R 28173680 28173695 chr3R 28181110 28181125 mdg1 5 7430 2.5 3.0 2.8 1.3 7445 chr3R 28173680 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181125 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-639 1513 chr3R 28215818 28215847 chr3R 28215895 28215923 10 76 2.0 3.0 2.5 2.9 105 chr3R 28215818 intron CG34354 + chr3R 28215870 intron CG34354 + chr3R 28215923 intron CG34354 + chr3R_10_28215001 chr3R_28215001 RAL-639 1514 chr3R 28253340 28253356 chr3R 28255850 28255866 jockey 7 2510 3.5 2.0 2.8 1.8 2526 chr3R 28253340 intergenic not near genes chr3R 28254603 intergenic not near genes chr3R 28255866 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-639 1515 chr3R 28282988 28283019 chr3R 28283617 28283648 10 629 3.0 2.5 2.8 2.6 660 chr3R 28282988 exon CG34436 + chr3R 28283318 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_10_28280001 chr3R_28280001 RAL-639 1516 chr3R 28302111 28302135 chr3R 28302550 28302574 jockey 6 439 2.5 6.0 4.2 1.2 463 chr3R 28302111 intergenic not near genes chr3R 28302342 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-639 1517 chr3R 28308072 28308083 chr3R 28308148 28308160 5 77 4.5 7.0 5.8 0.7 88 chr3R 28308072 intergenic not near genes chr3R 28308116 intergenic not near genes chr3R 28308160 intergenic not near genes chr3R_5_28305001 chr3R_28305001 RAL-639 1518 chr3R 28344073 28344095 chr3R 28344150 28344164 4 75 1.5 4.5 3.0 1.0 91 chr3R 28344073 exon Moca-cyp + chr3R 28344118 exon Moca-cyp + chr3R 28344164 exon Moca-cyp + chr3R_4_28340001 chr3R_28340001 RAL-639 1519 chr3R 28352514 28352544 chr3R 28352851 28352884 14 339 1.0 7.0 4.0 2.8 370 chr3R 28352514 exon Or98b + chr3R 28352699 exon Or98b + chr3R 28352884 exon Or98b + chr3R_14_28350001 chr3R_28350001 RAL-639 1520 chr3R 28411118 28411124 chr3R 28411194 28411200 6 76 3.0 1.0 2.0 2.0 82 chr3R 28411118 intergenic not near genes chr3R 28411159 intergenic not near genes chr3R 28411200 intergenic not near genes chr3R_6_28410001 chr3R_28410001 RAL-639 1521 chr3R 28484353 28484374 chr3R 28486270 28486292 13 1918 17.5 21.5 19.5 0.6 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_13_28485001 chr3R_28485001 RAL-639 1522 chr3R 28594102 28594129 chr3R 28594180 28594207 9 76 1.5 2.5 2.0 3.0 105 chr3R 28594102 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594207 5` UTR CR43440 + chr3R_9_28590001 chr3R_28590001 RAL-639 1523 chr3R 28616474 28616493 chr3R 28616568 28616586 7 94 3.0 5.0 4.0 1.4 112 chr3R 28616474 intron CG10011 - chr3R 28616530 intron CG10011 - chr3R 28616586 intron CG10011 - chr3R_7_28615001 chr3R_28615001 RAL-639 1524 chr3R 28664064 28664073 chr3R 28666775 28666784 4 2711 11.5 13.5 12.5 0.3 2720 chr3R 28664064 intergenic not near genes chr3R 28665424 intergenic not near genes chr3R 28666784 intergenic not near genes chr3R_4_28665001 chr3R_28665001 RAL-639 1525 chr3R 28663726 28663753 chr3R 28666909 28666936 5 3185 27.5 17.0 22.2 0.2 3210 chr3R 28663726 intergenic not near genes chr3R 28665331 intergenic not near genes chr3R 28666936 intergenic not near genes chr3R_5_28665001 chr3R_28665001 RAL-639 1526 chr3R 28670626 28670647 chr3R 28670712 28670733 7 86 1.0 0.5 0.8 3.9 107 chr3R 28670626 intergenic CG9989 +,CG33346 + chr3R 28670680 intergenic CG9989 +,CG33346 + chr3R 28670733 5` UTR CG9989 + chr3R_7_28670001 chr3R_28670001 RAL-639 1527 chr3R 28702929 28702964 chr3R 28703013 28703048 8 84 1.5 4.0 2.8 2.1 119 chr3R 28702929 intron htt + chr3R 28702988 intron htt + chr3R 28703048 intron htt + chr3R_8_28700001 chr3R_28700001 RAL-639 1528 chr3R 28758288 28758302 chr3R 28763900 28763917 roo 5 5616 3.0 0.0 1.5 2.0 5629 chr3R 28758288 intergenic aqrs - chr3R 28761102 intergenic not near genes chr3R 28763917 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-639 1529 chr3R 28792885 28792903 chr3R 28797977 28797998 jockey 5 5093 0.5 4.0 2.2 1.6 5113 chr3R 28792885 intergenic not near genes chr3R 28795442 intergenic not near genes chr3R 28797998 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-639 1530 chr3R 21907534 21907536 chr3R 28831798 28831802 67 6924266 21.0 16.5 18.8 3.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_67_25365001 chr3R_25365001 RAL-639 1531 chr3R 28843063 28843094 chr3R 28843177 28843209 8 115 1.0 2.0 1.5 3.2 146 chr3R 28843063 intron Apc - chr3R 28843136 intron Apc - chr3R 28843209 intron Apc - chr3R_8_28840001 chr3R_28840001 RAL-639 1532 chr3R 21907534 21907535 chr3R 29013340 29013340 7 7105806 21.0 13.5 17.2 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-639 1533 chr3R 29032751 29032771 chr3R 29032828 29032848 7 77 3.0 0.5 1.8 2.5 97 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032800 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032848 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_7_29030001 chr3R_29030001 RAL-639 1534 chr3R 29046490 29046507 chr3R 29046564 29046587 8 76 1.0 1.0 1.0 4.0 97 chr3R 29046490 3` UTR Pkc98E + chr3R 29046538 3` UTR Pkc98E + chr3R 29046587 3` UTR Pkc98E + chr3R_8_29045001 chr3R_29045001 RAL-639 1535 chr3R 29066244 29066274 chr3R 29066475 29066500 5 230 2.0 2.5 2.2 1.6 256 chr3R 29066244 intron CG11873 + chr3R 29066372 intron CG11873 + chr3R 29066500 intron CG11873 + chr3R_5_29065001 chr3R_29065001 RAL-639 1536 chr3R 29079391 29079408 chr3R 29080763 29080780 NOF 4 1372 2.5 3.0 2.8 1.1 1389 chr3R 29079391 intron CG11873 + chr3R 29080086 intron CG11873 + chr3R 29080780 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-639 1537 chr3R 29094030 29094045 chr3R 29094243 29094257 5 213 3.0 2.0 2.5 1.4 227 chr3R 29094030 intron CG11873 + chr3R 29094144 intron CG11873 + chr3R 29094257 intron CG11873 + chr3R_5_29090001 chr3R_29090001 RAL-639 1538 chr3R 29239238 29239249 chr3R 29245527 29245533 4 6288 4.5 29.0 16.8 0.2 6295 chr3R 29239238 exon CG31427 - chr3R 29242386 exon CG31445 - chr3R 29245533 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-639 1539 chr3R 29240475 29240504 chr3R 29240559 29240588 4 84 0.5 2.0 1.2 1.8 113 chr3R 29240475 intergenic CG31445 -,CG31427 - chr3R 29240532 intergenic CG31445 -,CG31427 - chr3R 29240588 3` UTR CG31445 - chr3R_4_29240001 chr3R_29240001 RAL-639 1540 chr3R 29244693 29244719 chr3R 29244772 29244798 11 78 2.5 3.5 3.0 2.8 105 chr3R 29244693 5` UTR CG31445 - chr3R 29244746 5` UTR CG31445 - chr3R 29244798 5` UTR CG31445 - chr3R_11_29240001 chr3R_29240001 RAL-639 1541 chr3R 29256269 29256299 chr3R 29256349 29256379 12 79 3.0 6.0 4.5 2.2 110 chr3R 29256269 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256379 intergenic CG45544 + chr3R_12_29255001 chr3R_29255001 RAL-639 1542 chr3R 29263508 29263536 chr3R 29263582 29263615 9 77 1.5 2.0 1.8 3.2 107 chr3R 29263508 intergenic not near genes chr3R 29263562 intergenic not near genes chr3R 29263615 intergenic not near genes chr3R_9_29260001 chr3R_29260001 RAL-639 1543 chr3R 29319821 29319853 chr3R 29320140 29320171 jockey 6 319 1.0 0.5 0.8 3.3 350 chr3R 29319821 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320171 intergenic not near genes chr3R_6_29315001 chr3R_29315001 RAL-639 1544 chr3R 29332291 29332305 chr3R 29332368 29332382 6 76 3.5 0.5 2.0 2.0 91 chr3R 29332291 intergenic not near genes chr3R 29332336 intergenic not near genes chr3R 29332382 intergenic not near genes chr3R_6_29330001 chr3R_29330001 RAL-639 1545 chr3R 29351737 29351749 chr3R 29351819 29351834 4 83 1.0 2.5 1.8 1.4 97 chr3R 29351737 intergenic not near genes chr3R 29351786 intergenic not near genes chr3R 29351834 intergenic not near genes chr3R_4_29350001 chr3R_29350001 RAL-639 1546 chr3R 29406620 29406645 chr3R 29407905 29407931 jockey 8 1284 3.0 4.0 3.5 1.8 1311 chr3R 29406620 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-639 1547 chr3R 29444286 29444310 chr3R 29444416 29444441 4 130 0.0 1.0 0.5 2.7 155 chr3R 29444286 intron Ptp99A + chr3R 29444364 intron Ptp99A + chr3R 29444441 intron Ptp99A + chr3R_4_29440001 chr3R_29440001 RAL-639 1548 chr3R 29449354 29449389 chr3R 29449432 29449467 8 78 1.0 1.0 1.0 4.0 113 chr3R 29449354 intron Ptp99A + chr3R 29449410 intron Ptp99A + chr3R 29449467 intron Ptp99A + chr3R_8_29445001 chr3R_29445001 RAL-639 1549 chr3R 29474436 29474459 chr3R 29474523 29474546 7 87 2.5 2.5 2.5 2.0 110 chr3R 29474436 intron Ptp99A + chr3R 29474491 intron Ptp99A + chr3R 29474546 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-639 1550 chr3R 29539431 29539461 chr3R 29539506 29539537 8 76 2.5 0.0 1.2 3.6 106 chr3R 29539431 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539537 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-639 1551 chr3R 29590374 29590403 chr3R 29590467 29590496 16 92 4.5 5.0 4.8 2.8 122 chr3R 29590374 intron CG31041 - chr3R 29590435 intron CG31041 - chr3R 29590496 intron CG31041 - chr3R_16_29590001 chr3R_29590001 RAL-639 1552 chr3R 29655723 29655741 chr3R 29655804 29655822 5 80 0.5 1.5 1.0 2.5 99 chr3R 29655723 intron Dop1R2 - chr3R 29655772 intron Dop1R2 - chr3R 29655822 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-639 1553 chr3R 29718150 29718178 chr3R 29718222 29718254 9 75 2.5 2.5 2.5 2.6 104 chr3R 29718150 intergenic not near genes chr3R 29718202 intergenic CG15506 + chr3R 29718254 intergenic CG15506 + chr3R_9_29715001 chr3R_29715001 RAL-639 1554 chr3R 29738276 29738291 chr3R 29739743 29739758 hobo 7 1466 3.0 5.5 4.2 1.3 1482 chr3R 29738276 5` UTR CG1969 + chr3R 29739017 intron CG1969 + chr3R 29739758 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-639 1555 chr3R 29760363 29760392 chr3R 29761564 29761592 pogo 8 1201 3.0 3.5 3.2 1.9 1229 chr3R 29760363 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761592 intergenic not near genes chr3R_8_29760001 chr3R_29760001 RAL-639 1556 chr3R 29773876 29773908 chr3R 29773967 29773975 12 88 1.5 0.0 0.8 6.7 99 chr3R 29773876 intron kay + chr3R 29773926 intron kay + chr3R 29773975 intron kay + chr3R_12_29770001 chr3R_29770001 RAL-639 1557 chr3R 29880587 29880618 chr3R 29880669 29880684 5 70 2.5 1.0 1.8 1.8 97 chr3R 29880587 intron CG31038 + chr3R 29880636 intron CG31038 + chr3R 29880684 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-639 1558 chr3R 29881011 29881037 chr3R 29881096 29881123 6 86 1.0 4.5 2.8 1.6 112 chr3R 29881011 intron CG31038 + chr3R 29881067 intron CG31038 + chr3R 29881123 intron CG31038 + chr3R_6_29880001 chr3R_29880001 RAL-639 1559 chr3R 29882021 29882053 chr3R 29891177 29891210 roo 11 9157 3.5 3.0 3.2 2.6 9189 chr3R 29882021 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-639 1560 chr3R 30013683 30013703 chr3R 30013766 30013786 5 83 1.5 3.5 2.5 1.4 103 chr3R 30013683 intron CG7920 - chr3R 30013734 intron CG7920 - chr3R 30013786 intron CG7920 - chr3R_5_30010001 chr3R_30010001 RAL-639 1561 chr3R 30032161 30032180 chr3R 30032240 30032259 7 79 4.5 3.5 4.0 1.4 98 chr3R 30032161 intron Axn + chr3R 30032210 intron Axn + chr3R 30032259 intron Axn + chr3R_7_30030001 chr3R_30030001 RAL-639 1562 chr3R 30084856 30084871 chr3R 30086322 30086338 hobo 7 1467 6.0 3.0 4.5 1.3 1482 chr3R 30084856 intron sima + chr3R 30085597 intron sima + chr3R 30086338 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-639 1563 chr3R 30170761 30170782 chr3R 30170848 30170869 11 87 1.5 3.5 2.5 3.1 108 chr3R 30170761 intron CG31028 - chr3R 30170815 intron CG31028 - chr3R 30170869 intron CG31028 - chr3R_11_30170001 chr3R_30170001 RAL-639 1564 chr3R 30177743 30177766 chr3R 30177860 30177880 5 116 2.5 3.5 3.0 1.2 137 chr3R 30177743 intergenic CG1983 -,CG15530 + chr3R 30177812 intergenic CG15530 +,CG1983 - chr3R 30177880 5` UTR CG15530 + chr3R_5_30175001 chr3R_30175001 RAL-639 1565 chr3R 30210662 30210674 chr3R 30210741 30210748 5 79 0.0 4.0 2.0 1.7 86 chr3R 30210662 intergenic CecA1 +,Anp + chr3R 30210705 intergenic CecA1 +,Anp + chr3R 30210748 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-639 1566 chr3R 30289114 30289143 chr3R 30289204 30289233 6 90 1.0 4.0 2.5 1.7 119 chr3R 30289114 intron hdc + chr3R 30289174 intron hdc + chr3R 30289233 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-639 1567 chr3R 30307126 30307141 chr3R 30307205 30307211 5 77 1.0 1.5 1.2 2.3 85 chr3R 30307126 intron hdc + chr3R 30307168 intron hdc + chr3R 30307211 intron hdc + chr3R_5_30305001 chr3R_30305001 RAL-639 1568 chr3R 30317335 30317359 chr3R 30324927 30324949 roo 4 7592 0.5 1.5 1.0 2.0 7614 chr3R 30317335 intron hdc + chr3R 30321142 intron hdc + chr3R 30324949 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-639 1569 chr3R 30396216 30396238 chr3R 30404482 30404504 roo 7 8266 3.5 5.0 4.2 1.3 8288 chr3R 30396216 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404504 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-639 1570 chr3R 30480484 30480509 chr3R 30482951 30482977 jockey 13 2466 3.0 4.5 3.8 2.7 2493 chr3R 30480484 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-639 1571 chr3R 30592503 30592538 chr3R 30592613 30592647 10 109 2.5 2.5 2.5 2.9 144 chr3R 30592503 intergenic CG2246 - chr3R 30592575 intergenic CG2246 - chr3R 30592647 intergenic CG2246 - chr3R_10_30590001 chr3R_30590001 RAL-639 1572 chr3R 30679523 30679550 chr3R 30686992 30687019 blood 6 7469 0.5 1.0 0.8 3.3 7496 chr3R 30679523 intergenic not near genes chr3R 30683271 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-639 1573 chr3R 30818808 30818840 chr3R 30820373 30820405 1360 7 1565 5.5 1.5 3.5 1.6 1597 chr3R 30818808 intron cindr + chr3R 30819606 intron cindr + chr3R 30820405 intron cindr + chr3R_7_30815001 chr3R_30815001 RAL-639 1574 chr3R 30859411 30859426 chr3R 30859489 30859504 4 78 6.0 3.0 4.5 0.7 93 chr3R 30859411 intergenic not near genes chr3R 30859458 intergenic not near genes chr3R 30859504 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-639 1575 chr3R 31042111 31042141 chr3R 31042198 31042228 9 87 5.0 3.0 4.0 1.8 117 chr3R 31042111 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042228 intron CanA1 + chr3R_9_31040001 chr3R_31040001 RAL-639 1576 chr3R 31074236 31074261 chr3R 31081834 31081859 springer 8 7598 1.5 2.5 2.0 2.7 7623 chr3R 31074236 intron Sox100B + chr3R 31078048 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_8_31075001 chr3R_31075001 RAL-639 1577 chr3R 31087680 31087691 chr3R 31087866 31087879 4 187 2.5 7.0 4.8 0.7 199 chr3R 31087680 intergenic not near genes chr3R 31087780 intergenic not near genes chr3R 31087879 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-639 1578 chr3R 31346721 31346739 chr3R 31346795 31346818 9 78 1.5 3.0 2.2 2.8 97 chr3R 31346721 intron CG34347 + chr3R 31346770 intron CG34347 + chr3R 31346818 intron CG34347 + chr3R_9_31345001 chr3R_31345001 RAL-639 1579 chr3R 31370706 31370733 chr3R 31370793 31370827 4 93 3.5 2.5 3.0 1.0 121 chr3R 31370706 3` UTR CG34347 + chr3R 31370766 3` UTR CG34347 + chr3R 31370827 3` UTR CG34347 + chr3R_4_31370001 chr3R_31370001 RAL-639 1580 chr3R 31412710 31412738 chr3R 31412803 31412831 4 93 0.0 3.0 1.5 1.6 121 chr3R 31412710 intron Gprk2 + chr3R 31412770 intron Gprk2 + chr3R 31412831 intron Gprk2 + chr3R_4_31410001 chr3R_31410001 RAL-639 1581 chr3R 31413090 31413117 chr3R 31418290 31418317 copia 7 5200 2.0 0.5 1.2 3.2 5227 chr3R 31413090 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-639 1582 chr3R 31426881 31426912 chr3R 31426973 31427004 9 92 1.0 1.5 1.2 4.1 123 chr3R 31426881 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-639 1583 chr3R 31435361 31435391 chr3R 31435513 31435543 12 151 2.0 6.0 4.0 2.4 182 chr3R 31435361 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_12_31435001 chr3R_31435001 RAL-639 1584 chr3R 31442271 31442293 chr3R 31442356 31442378 6 84 3.5 3.0 3.2 1.4 107 chr3R 31442271 intron Gprk2 + chr3R 31442324 intron Gprk2 + chr3R 31442378 intron Gprk2 + chr3R_6_31440001 chr3R_31440001 RAL-639 1585 chr3R 31448607 31448624 chr3R 31448683 31448698 5 75 5.0 2.5 3.8 1.0 91 chr3R 31448607 intron Gprk2 + chr3R 31448652 intron Gprk2 + chr3R 31448698 intron Gprk2 + chr3R_5_31445001 chr3R_31445001 RAL-639 1586 chr3R 31539341 31539356 chr3R 31539426 31539441 5 85 2.0 3.0 2.5 1.4 100 chr3R 31539341 intergenic not near genes chr3R 31539391 intergenic not near genes chr3R 31539441 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-639 1587 chr3R 31642809 31642833 chr3R 31643054 31643078 8 245 3.0 2.5 2.8 2.1 269 chr3R 31642809 intron kek6 + chr3R 31642944 intron kek6 + chr3R 31643078 intron kek6 + chr3R_8_31640001 chr3R_31640001 RAL-639 1588 chr3R 31691531 31691563 chr3R 31696297 31696328 Doc 8 4763 3.0 5.5 4.2 1.5 4797 chr3R 31691531 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-639 1589 chr3R 31699737 31699753 chr3R 31699811 31699834 5 79 2.5 4.0 3.2 1.2 97 chr3R 31699737 intergenic not near genes chr3R 31699786 intergenic not near genes chr3R 31699834 intergenic not near genes chr3R_5_31695001 chr3R_31695001 RAL-639 1590 chr3R 31774873 31774891 chr3R 31775017 31775036 6 145 3.0 2.0 2.5 1.7 163 chr3R 31774873 3` UTR sip3 + chr3R 31774954 3` UTR sip3 + chr3R 31775036 3` UTR sip3 + chr3R_6_31770001 chr3R_31770001 RAL-639 1591 chr3R 31930881 31930886 chr3R 31930981 31930986 4 100 4.0 0.0 2.0 1.3 105 chr3R 31930881 intron heph - chr3R 31930934 intron heph - chr3R 31930986 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-639 1592 chr3R 31931194 31931214 chr3R 31931276 31931297 4 83 2.5 1.0 1.8 1.4 103 chr3R 31931194 intron heph - chr3R 31931246 intron heph - chr3R 31931297 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-639 1593 chr3R 31976548 31976567 chr3R 31976829 31976848 5 281 0.0 3.5 1.8 1.8 300 chr3R 31976548 intron heph - chr3R 31976698 intron heph - chr3R 31976848 intron heph - chr3R_5_31975001 chr3R_31975001 RAL-639 1594 chr3R 31997995 31998017 chr3R 32005460 32005487 blood 6 7465 1.0 2.0 1.5 2.4 7492 chr3R 31997995 intron heph - chr3R 32001741 intron heph - chr3R 32005487 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-639 1595 chr4 280803 280834 chr4 281433 281463 4 630 1.5 1.0 1.2 1.8 660 chr4 280803 intron Syt7 - chr4 281133 intron Syt7 - chr4 281463 intron Syt7 - chr4_4_280001 chr4_280001 RAL-639 1596 chrX 318483 318499 chrX 323569 323585 flea 5 5085 2.5 4.5 3.5 1.1 5102 chrX 318483 intron,intron CG3777 +,CG32816 - chrX 321034 intron,intron CG3777 +,CG32816 - chrX 323585 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-639 1597 chrX 428416 428445 chrX 434601 434629 3S18 7 6185 6.5 1.0 3.8 1.5 6213 chrX 428416 intron CG32816 - chrX 431522 intron CG32816 - chrX 434629 intron CG32816 - chrX_7_430001 chrX_430001 RAL-639 1598 chrX 440993 441021 chrX 441071 441099 8 78 2.5 2.0 2.2 2.5 106 chrX 440993 intron CG32816 - chrX 441046 intron CG32816 - chrX 441099 intron CG32816 - chrX_8_440001 chrX_440001 RAL-639 1599 chrX 547631 547666 chrX 547875 547910 6 243 1.0 2.0 1.5 2.4 279 chrX 547631 intron Appl + chrX 547770 intron Appl + chrX 547910 intron Appl + chrX_6_545001 chrX_545001 RAL-639 1600 chrX 551423 551449 chrX 558984 559011 412 4 7562 3.0 1.0 2.0 1.3 7588 chrX 551423 intron Appl + chrX 555217 intron Appl + chrX 559011 intron Appl + chrX_4_555001 chrX_555001 RAL-639 1601 chrX 667651 667680 chrX 667735 667763 9 84 1.0 0.5 0.8 5.0 112 chrX 667651 intergenic not near genes chrX 667707 intergenic not near genes chrX 667763 intergenic not near genes chrX_9_665001 chrX_665001 RAL-639 1602 chrX 670263 670293 chrX 670342 670373 5 78 0.0 0.5 0.2 4.2 110 chrX 670263 intergenic not near genes chrX 670318 intergenic not near genes chrX 670373 intergenic not near genes chrX_5_670001 chrX_670001 RAL-639 1603 chrX 778125 778152 chrX 778215 778241 7 89 6.0 1.0 3.5 1.6 116 chrX 778125 intron fz3 + chrX 778183 intron fz3 + chrX 778241 intron fz3 + chrX_7_775001 chrX_775001 RAL-639 1604 chrX 823741 823762 chrX 823982 824003 7 240 15.5 13.0 14.2 0.5 262 chrX 823741 intron CG43867 - chrX 823872 intron CG43867 - chrX 824003 intron CG43867 - chrX_7_820001 chrX_820001 RAL-639 1605 chrX 906704 906733 chrX 908492 908522 S-element 8 1788 2.5 6.0 4.2 1.5 1818 chrX 906704 intron CG43867 - chrX 907613 intron CG43867 - chrX 908522 intron CG43867 - chrX_8_905001 chrX_905001 RAL-639 1606 chrX 1053118 1053120 chrX 16983076 16983077 5 15929957 11.5 9.5 10.5 0.4 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-639 1607 chrX 1416418 1416423 chrX 1416472 1416502 5 70 0.0 2.5 1.2 2.3 84 chrX 1416418 intron futsch + chrX 1416460 intron futsch + chrX 1416502 intron futsch + chrX_5_1415001 chrX_1415001 RAL-639 1608 chrX 1518042 1518071 chrX 1523444 1523472 jockey 5 5401 5.5 2.5 4.0 1.0 5430 chrX 1518042 intergenic inc + chrX 1520757 intergenic not near genes chrX 1523472 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-639 1609 chrX 1570896 1570922 chrX 1570983 1571008 5 86 1.5 1.5 1.5 2.0 112 chrX 1570896 intron Mur2B - chrX 1570952 intron Mur2B - chrX 1571008 intron Mur2B - chrX_5_1570001 chrX_1570001 RAL-639 1610 chrX 1627972 1628003 chrX 1635440 1635470 gtwin 7 7467 2.5 4.0 3.2 1.7 7498 chrX 1627972 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-639 1611 chrX 2020863 2020896 chrX 2025582 2025616 12 4723 32.0 16.0 24.0 0.5 4753 chrX 2020863 exon east + chrX 2023240 3` UTR east + chrX 2025616 exon Actn - chrX_12_2020001 chrX_2020001 RAL-639 1612 chrX 2377472 2377507 chrX 2377550 2377585 8 78 1.5 1.5 1.5 3.2 113 chrX 2377472 intron PsGEF - chrX 2377528 intron PsGEF - chrX 2377585 intron PsGEF - chrX_8_2375001 chrX_2375001 RAL-639 1613 chrX 2397925 2397930 chrX 2398019 2398023 4 94 6.0 0.0 3.0 1.0 98 chrX 2397925 intergenic not near genes chrX 2397974 intergenic not near genes chrX 2398023 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-639 1614 chrX 2399842 2399866 chrX 2408192 2408212 roo 7 8349 2.5 3.0 2.8 1.8 8370 chrX 2399842 intergenic not near genes chrX 2404027 intergenic not near genes chrX 2408212 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-639 1615 chrX 2552806 2552829 chrX 2552927 2552953 7 123 5.5 4.5 5.0 1.2 147 chrX 2552806 intron Pdfr + chrX 2552880 intron Pdfr + chrX 2552953 intron Pdfr + chrX_7_2550001 chrX_2550001 RAL-639 1616 chrX 2578819 2578837 chrX 2578909 2578929 9 92 3.0 2.0 2.5 2.6 110 chrX 2578819 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578929 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-639 1617 chrX 2610385 2610399 chrX 2617502 2617516 HMS-Beagle 5 7117 4.5 2.0 3.2 1.2 7131 chrX 2610385 intergenic CG8636 - chrX 2613950 intergenic not near genes chrX 2617516 intergenic Tsp3A - chrX_5_2610001 chrX_2610001 RAL-639 1618 chrX 2664386 2664415 chrX 2665531 2665561 1360 6 1145 2.5 3.5 3.0 1.5 1175 chrX 2664386 intron sgg + chrX 2664974 intron sgg + chrX 2665561 intron sgg + chrX_6_2660001 chrX_2660001 RAL-639 1619 chrX 2758046 2758067 chrX 2758127 2758148 5 78 3.0 2.0 2.5 1.4 102 chrX 2758046 intron kirre + chrX 2758097 intron kirre + chrX 2758148 intron kirre + chrX_5_2755001 chrX_2755001 RAL-639 1620 chrX 2844911 2844930 chrX 2852306 2852340 mdg1 5 7407 1.5 0.0 0.8 2.8 7429 chrX 2844911 intron kirre + chrX 2848626 intron kirre + chrX 2852340 intron kirre + chrX_5_2845001 chrX_2845001 RAL-639 1621 chrX 3058023 3058046 chrX 3058264 3058287 pogo 6 241 0.0 0.0 0.0 6.0 264 chrX 3058023 intron kirre + chrX 3058155 intron kirre + chrX 3058287 intron kirre + chrX_6_3055001 chrX_3055001 RAL-639 1622 chrX 3075638 3075648 chrX 3080944 3080955 Transpac 4 5307 0.5 0.0 0.2 3.3 5317 chrX 3075638 intron kirre + chrX 3078296 intron kirre + chrX 3080955 intron kirre + chrX_4_3075001 chrX_3075001 RAL-639 1623 chrX 3107233 3107233 chrX 16983071 16983077 5 13875843 1.5 10.5 6.0 0.7 13875844 chrX 3107233 intron kirre + chrX 10045155 intron,3` UTR Cht6 +,CR45185 - chrX 16983077 intron CG45002 - chrX_5_10045001 chrX_10045001 RAL-639 1624 chrX 3195311 3195327 chrX 3195424 3195440 5 113 1.0 0.5 0.8 2.8 129 chrX 3195311 intron dnc + chrX 3195376 intron dnc + chrX 3195440 intron dnc + chrX_5_3195001 chrX_3195001 RAL-639 1625 chrX 3278159 3278168 chrX 3278240 3278249 5 81 2.5 7.5 5.0 0.8 90 chrX 3278159 intron dnc + chrX 3278204 intron dnc + chrX 3278249 intron dnc + chrX_5_3275001 chrX_3275001 RAL-639 1626 chrX 3481749 3481770 chrX 3481825 3481846 7 76 3.0 5.5 4.2 1.3 97 chrX 3481749 intron,intron CR44999 +,CG10804 - chrX 3481798 intron,intron CR44999 +,CG10804 - chrX 3481846 intron,intron CR44999 +,CG10804 - chrX_7_3480001 chrX_3480001 RAL-639 1627 chrX 3493103 3493122 chrX 3502250 3502278 roo 4 9155 2.5 1.0 1.8 1.4 9175 chrX 3493103 intron,intron CR44999 +,Gas8 - chrX 3497690 intron,intron CR44999 +,Gas8 - chrX 3502278 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-639 1628 chrX 3597553 3597583 chrX 3619721 3619751 roo 12 22166 2.0 3.5 2.8 3.2 22198 chrX 3597553 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-639 1629 chrX 3713126 3713130 chrX 3713234 3713239 4 109 1.0 3.0 2.0 1.3 113 chrX 3713126 intron Rala - chrX 3713182 intron Rala - chrX 3713239 intron Rala - chrX_4_3710001 chrX_3710001 RAL-639 1630 chrX 3818744 3818761 chrX 3818980 3818996 4 235 10.5 3.5 7.0 0.5 252 chrX 3818744 intron ec + chrX 3818870 intron ec + chrX 3818996 intron ec + chrX_4_3815001 chrX_3815001 RAL-639 1631 chrX 3866104 3866132 chrX 3866182 3866185 6 74 0.5 2.0 1.2 2.7 81 chrX 3866104 intron yin - chrX 3866144 intron yin - chrX 3866185 intron yin - chrX_6_3865001 chrX_3865001 RAL-639 1632 chrX 3881268 3881302 chrX 3881407 3881440 11 139 2.0 3.0 2.5 3.1 172 chrX 3881268 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881440 intron VhaAC39-1 + chrX_11_3880001 chrX_3880001 RAL-639 1633 chrX 3930043 3930067 chrX 3930124 3930148 7 81 1.0 1.5 1.2 3.2 105 chrX 3930043 5` UTR CG42541 - chrX 3930096 5` UTR CG42541 - chrX 3930148 5` UTR CG42541 - chrX_7_3930001 chrX_3930001 RAL-639 1634 chrX 3986862 3986895 chrX 3994494 3994528 412 11 7633 2.0 4.0 3.0 2.8 7666 chrX 3986862 intergenic not near genes chrX 3990695 intergenic not near genes chrX 3994528 intergenic not near genes chrX_11_3990001 chrX_3990001 RAL-639 1635 chrX 4101889 4101896 chrX 4101969 4101976 5 80 1.0 5.0 3.0 1.2 87 chrX 4101889 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101976 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-639 1636 chrX 4132668 4132700 chrX 4132836 4132867 5 167 3.0 0.5 1.8 1.8 199 chrX 4132668 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132867 intergenic Fas2 -,GlcAT-I + chrX_5_4130001 chrX_4130001 RAL-639 1637 chrX 4157896 4157915 chrX 4164949 4164968 297 4 7052 2.5 4.0 3.2 1.0 7072 chrX 4157896 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164968 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-639 1638 chrX 4252945 4252973 chrX 4253033 4253061 7 88 1.5 2.0 1.8 2.5 116 chrX 4252945 intergenic CG15576 - chrX 4253003 intergenic CG15576 - chrX 4253061 intergenic CG15576 - chrX_7_4250001 chrX_4250001 RAL-639 1639 chrX 4324395 4324415 chrX 4324472 4324492 5 77 0.0 3.5 1.8 1.8 97 chrX 4324395 intron norpA + chrX 4324444 intron norpA + chrX 4324492 intron norpA + chrX_5_4320001 chrX_4320001 RAL-639 1640 chrX 4361434 4361463 chrX 4361511 4361540 4 77 0.0 0.0 0.0 4.0 106 chrX 4361434 intron norpA + chrX 4361487 intron norpA + chrX 4361540 intron norpA + chrX_4_4360001 chrX_4360001 RAL-639 1641 chrX 4731819 4731833 chrX 4736911 4736916 jockey 6 5091 6.0 5.0 5.5 0.9 5097 chrX 4731819 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736916 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-639 1642 chrX 4763255 4763283 chrX 4763743 4763771 Stalker4 8 487 5.0 5.0 5.0 1.3 516 chrX 4763255 intergenic not near genes chrX 4763513 intergenic not near genes chrX 4763771 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-639 1643 chrX 4792382 4792406 chrX 4792814 4792839 jockey 9 433 7.0 5.5 6.2 1.2 457 chrX 4792382 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792839 intergenic not near genes chrX_9_4790001 chrX_4790001 RAL-639 1644 chrX 4827968 4827988 chrX 4835338 4835356 Stalker4 4 7370 8.0 5.0 6.5 0.5 7388 chrX 4827968 intergenic not near genes chrX 4831662 intergenic not near genes chrX 4835356 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-639 1645 chrX 4827990 4828000 chrX 4835337 4835355 Stalker4 5 7353 6.5 5.0 5.8 0.7 7365 chrX 4827990 intergenic not near genes chrX 4831672 intergenic not near genes chrX 4835355 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-639 1646 chrX 4864164 4864180 chrX 4864242 4864247 5 75 11.0 14.5 12.8 0.4 83 chrX 4864164 intron CG42594 + chrX 4864206 intron CG42594 + chrX 4864247 intron CG42594 + chrX_5_4860001 chrX_4860001 RAL-639 1647 chrX 4931351 4931378 chrX 4931439 4931471 5 90 10.0 9.5 9.8 0.5 120 chrX 4931351 intron CG44774 - chrX 4931411 intron CG44774 - chrX 4931471 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-639 1648 chrX 4982660 4982680 chrX 4982747 4982766 5 87 7.0 7.0 7.0 0.6 106 chrX 4982660 intron CR44833 - chrX 4982713 intron CR44833 - chrX 4982766 intron CR44833 - chrX_5_4980001 chrX_4980001 RAL-639 1649 chrX 5002087 5002096 chrX 5002171 5002178 4 84 0.0 2.0 1.0 2.0 91 chrX 5002087 intron CR44833 - chrX 5002132 intron CR44833 - chrX 5002178 intron CR44833 - chrX_4_5000001 chrX_5000001 RAL-639 1650 chrX 5041019 5041037 chrX 5041098 5041114 7 78 3.5 1.5 2.5 2.0 95 chrX 5041019 intron CR44833 - chrX 5041066 intron CR44833 - chrX 5041114 intron CR44833 - chrX_7_5040001 chrX_5040001 RAL-639 1651 chrX 5096274 5096305 chrX 5103838 5103870 springer 9 7564 2.0 1.0 1.5 3.6 7596 chrX 5096274 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_9_5100001 chrX_5100001 RAL-639 1652 chrX 5220392 5220414 chrX 5220633 5220639 6 238 0.0 3.5 1.8 2.1 247 chrX 5220392 intron,intron CG15465 +,rg + chrX 5220516 intron,intron CG15465 +,rg + chrX 5220639 intron,intron CG15465 +,rg + chrX_6_5220001 chrX_5220001 RAL-639 1653 chrX 5345398 5345425 chrX 5345506 5345536 5 110 2.0 1.0 1.5 2.0 138 chrX 5345398 intron SK + chrX 5345467 intron SK + chrX 5345536 intron SK + chrX_5_5345001 chrX_5345001 RAL-639 1654 chrX 5473593 5473616 chrX 5473669 5473692 6 76 3.0 1.0 2.0 2.0 99 chrX 5473593 intron SPR + chrX 5473642 intron SPR + chrX 5473692 intron SPR + chrX_6_5470001 chrX_5470001 RAL-639 1655 chrX 5512054 5512074 chrX 5512136 5512146 4 79 1.5 0.0 0.8 2.2 92 chrX 5512054 intergenic not near genes chrX 5512100 intergenic not near genes chrX 5512146 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-639 1656 chrX 5516963 5516975 chrX 5517039 5517051 4 76 1.0 5.0 3.0 1.0 88 chrX 5516963 5` UTR CG12730 + chrX 5517007 5` UTR,3` UTR CG12730 +,CR45518 - chrX 5517051 5` UTR,3` UTR CG12730 +,CR45518 - chrX_4_5515001 chrX_5515001 RAL-639 1657 chrX 5726258 5726282 chrX 5726600 5726624 6 341 0.0 2.0 1.0 3.0 366 chrX 5726258 intron CG32758 - chrX 5726441 intron CG32758 - chrX 5726624 intron CG32758 - chrX_6_5725001 chrX_5725001 RAL-639 1658 chrX 5883815 5883839 chrX 5884056 5884080 pogo 8 241 1.5 2.0 1.8 2.9 265 chrX 5883815 intron CR45668 - chrX 5883948 intron CR45668 - chrX 5884080 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-639 1659 chrX 5884170 5884187 chrX 5884410 5884428 pogo 6 240 1.5 2.0 1.8 2.1 258 chrX 5884170 intron CR45668 - chrX 5884299 intron CR45668 - chrX 5884428 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-639 1660 chrX 6118697 6118727 chrX 6118779 6118809 6 82 2.0 1.5 1.8 2.1 112 chrX 6118697 intron Ca-alpha1T - chrX 6118753 intron Ca-alpha1T - chrX 6118809 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-639 1661 chrX 6171583 6171615 chrX 6179016 6179047 Quasimodo 6 7433 1.5 2.5 2.0 2.0 7464 chrX 6171583 intron Ca-alpha1T - chrX 6175315 intron Ca-alpha1T - chrX 6179047 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-639 1662 chrX 6314420 6314448 chrX 6314495 6314523 5 75 2.0 2.0 2.0 1.7 103 chrX 6314420 intron CG15894 + chrX 6314472 intron CG15894 + chrX 6314523 intron CG15894 + chrX_5_6310001 chrX_6310001 RAL-639 1663 chrX 6388669 6388693 chrX 6388745 6388769 4 76 1.0 1.5 1.2 1.8 100 chrX 6388669 intergenic not near genes chrX 6388719 intergenic not near genes chrX 6388769 intergenic not near genes chrX_4_6385001 chrX_6385001 RAL-639 1664 chrX 6392874 6392904 chrX 6397638 6397669 Doc 13 4765 1.5 3.0 2.2 4.1 4795 chrX 6392874 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397669 intergenic not near genes chrX_13_6395001 chrX_6395001 RAL-639 1665 chrX 6404838 6404869 chrX 6404965 6404996 7 127 1.5 2.0 1.8 2.5 158 chrX 6404838 intergenic not near genes chrX 6404917 intergenic not near genes chrX 6404996 intergenic not near genes chrX_7_6400001 chrX_6400001 RAL-639 1666 chrX 6514312 6514334 chrX 6514553 6514575 8 241 1.0 2.0 1.5 3.2 263 chrX 6514312 intron CG42340 - chrX 6514444 intron CG42340 - chrX 6514575 intron CG42340 - chrX_8_6510001 chrX_6510001 RAL-639 1667 chrX 6562823 6562851 chrX 6571302 6571333 Tirant 14 8482 2.5 3.0 2.8 3.7 8510 chrX 6562823 intron CG34417 + chrX 6567078 intron CG34417 + chrX 6571333 intron CG34417 + chrX_14_6565001 chrX_6565001 RAL-639 1668 chrX 6639591 6639619 chrX 6639669 6639696 4 78 2.0 1.0 1.5 1.6 105 chrX 6639591 intron pigs + chrX 6639644 intron pigs + chrX 6639696 intron pigs + chrX_4_6635001 chrX_6635001 RAL-639 1669 chrX 6897690 6897708 chrX 6897799 6897818 6 110 1.0 2.0 1.5 2.4 128 chrX 6897690 intergenic not near genes chrX 6897754 intergenic not near genes chrX 6897818 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-639 1670 chrX 6903631 6903645 chrX 6903998 6904013 4 367 2.5 4.5 3.5 0.9 382 chrX 6903631 intergenic not near genes chrX 6903822 intergenic not near genes chrX 6904013 intergenic not near genes chrX_4_6900001 chrX_6900001 RAL-639 1671 chrX 7023618 7023632 chrX 7031007 7031022 Tabor 5 7389 4.5 4.0 4.2 1.0 7404 chrX 7023618 intron CG12541 - chrX 7027320 intron CG12541 - chrX 7031022 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-639 1672 chrX 7125244 7125271 chrX 7134403 7134429 roo 5 9158 1.0 1.0 1.0 2.5 9185 chrX 7125244 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134429 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-639 1673 chrX 8024656 8024672 chrX 8024726 8024748 4 70 3.5 0.0 1.8 1.4 92 chrX 8024656 intron Tbh + chrX 8024702 intron Tbh + chrX 8024748 intron Tbh + chrX_4_8020001 chrX_8020001 RAL-639 1674 chrX 8888647 8888657 chrX 8888724 8888734 4 77 1.5 4.5 3.0 1.0 87 chrX 8888647 intron Moe - chrX 8888690 intron Moe - chrX 8888734 intron Moe - chrX_4_8885001 chrX_8885001 RAL-639 1675 chrX 8922329 8922355 chrX 8922763 8922786 jockey 11 434 2.0 3.0 2.5 3.1 457 chrX 8922329 intron rdgA + chrX 8922558 intron rdgA + chrX 8922786 intron rdgA + chrX_11_8920001 chrX_8920001 RAL-639 1676 chrX 8948757 8948792 chrX 8956267 8956302 roo 7 7509 1.0 2.0 1.5 2.8 7545 chrX 8948757 intron rdgA + chrX 8952530 intron rdgA + chrX 8956302 intron rdgA + chrX_7_8950001 chrX_8950001 RAL-639 1677 chrX 8971507 8971535 chrX 8971590 8971618 7 80 1.0 3.5 2.2 2.2 111 chrX 8971507 intron rdgA + chrX 8971562 intron rdgA + chrX 8971618 intron rdgA + chrX_7_8970001 chrX_8970001 RAL-639 1678 chrX 9337940 9337969 chrX 9338032 9338061 6 91 2.5 0.5 1.5 2.4 121 chrX 9337940 intron CG34449 - chrX 9338000 intron CG34449 - chrX 9338061 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-639 1679 chrX 9433509 9433543 chrX 9433603 9433635 7 93 1.5 2.5 2.0 2.3 126 chrX 9433509 intron mgl - chrX 9433572 intron mgl - chrX 9433635 intron mgl - chrX_7_9430001 chrX_9430001 RAL-639 1680 chrX 9508136 9508167 chrX 9509654 9509685 jockey 12 1518 1.0 4.5 2.8 3.2 1549 chrX 9508136 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509685 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-639 1681 chrX 9575794 9575821 chrX 9576116 9576139 mdg3 12 323 2.0 4.5 3.2 2.9 345 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576139 intron,5` UTR CG32699 -,CG42395 - chrX_12_9575001 chrX_9575001 RAL-639 1682 chrX 9595349 9595367 chrX 9595434 9595452 4 85 5.0 2.0 3.5 0.9 103 chrX 9595349 5` UTR CR45543 + chrX 9595400 5` UTR CR45543 + chrX 9595452 5` UTR CR45543 + chrX_4_9595001 chrX_9595001 RAL-639 1683 chrX 9758055 9758079 chrX 9758140 9758164 5 85 1.5 0.0 0.8 2.8 109 chrX 9758055 intergenic not near genes chrX 9758110 intergenic not near genes chrX 9758164 intergenic not near genes chrX_5_9755001 chrX_9755001 RAL-639 1684 chrX 9997845 9997871 chrX 9997979 9998005 5 134 1.5 1.5 1.5 2.0 160 chrX 9997845 intron CG32694 + chrX 9997925 intron CG32694 + chrX 9998005 intron CG32694 + chrX_5_9995001 chrX_9995001 RAL-639 1685 chrX 10154297 10154303 chrX 10154373 10154379 4 76 3.5 3.0 3.2 1.0 82 chrX 10154297 intron,intron CR44894 -,CG12645 + chrX 10154338 intron,intron CR44894 -,CG12645 + chrX 10154379 intron,intron CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-639 1686 chrX 10382665 10382684 chrX 10382747 10382766 7 82 1.0 0.0 0.5 4.7 101 chrX 10382665 exon CG17841 + chrX 10382716 3` UTR CG17841 + chrX 10382766 3` UTR CG17841 + chrX_7_10380001 chrX_10380001 RAL-639 1687 chrX 10401399 10401431 chrX 10401476 10401511 4 79 0.5 2.0 1.2 1.8 112 chrX 10401399 intron flw + chrX 10401455 intron flw + chrX 10401511 intron flw + chrX_4_10400001 chrX_10400001 RAL-639 1688 chrX 10446689 10446713 chrX 10446771 10446795 10 82 0.0 1.0 0.5 6.7 106 chrX 10446689 intron CG32683 - chrX 10446742 intron CG32683 - chrX 10446795 intron CG32683 - chrX_10_10445001 chrX_10445001 RAL-639 1689 chrX 10453079 10453103 chrX 10453267 10453279 4 186 0.5 2.0 1.2 1.8 200 chrX 10453079 intron CG32683 - chrX 10453179 intron CG32683 - chrX 10453279 intron CG32683 - chrX_4_10450001 chrX_10450001 RAL-639 1690 chrX 10550335 10550347 chrX 10550413 10550425 4 78 1.5 1.5 1.5 1.6 90 chrX 10550335 intron spri - chrX 10550380 intron spri - chrX 10550425 intron spri - chrX_4_10550001 chrX_10550001 RAL-639 1691 chrX 10686051 10686081 chrX 10691188 10691218 roo 6 5137 1.5 2.0 1.8 2.1 5167 chrX 10686051 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691218 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-639 1692 chrX 10772676 10772693 chrX 10772758 10772776 Tirant 6 83 2.0 1.5 1.8 2.1 100 chrX 10772676 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772776 intron CG15211 + chrX_6_10770001 chrX_10770001 RAL-639 1693 chrX 11069157 11069183 chrX 11069300 11069326 4 143 2.5 1.5 2.0 1.3 169 chrX 11069157 intergenic not near genes chrX 11069242 intergenic not near genes chrX 11069326 intergenic not near genes chrX_4_11065001 chrX_11065001 RAL-639 1694 chrX 11141980 11142063 chrX 11142055 11142139 5 76 0.0 0.0 0.0 5.0 159 chrX 11141980 intergenic CG15199 - chrX 11142060 intergenic CG15199 -,CG15202 + chrX 11142139 intergenic CG15199 -,CG15202 + chrX_5_11140001 chrX_11140001 RAL-639 1695 chrX 11165894 11165902 chrX 11166226 11166234 4 332 2.0 2.0 2.0 1.3 340 chrX 11165894 intergenic not near genes chrX 11166064 intergenic not near genes chrX 11166234 intergenic not near genes chrX_4_11165001 chrX_11165001 RAL-639 1696 chrX 11287170 11287205 chrX 11287256 11287291 7 86 0.0 0.5 0.2 5.8 121 chrX 11287170 intron CG44422 - chrX 11287230 intron CG44422 - chrX 11287291 intron CG44422 - chrX_7_11285001 chrX_11285001 RAL-639 1697 chrX 11312062 11312092 chrX 11319413 11319441 Stalker2 6 7348 1.5 2.0 1.8 2.1 7379 chrX 11312062 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319441 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-639 1698 chrX 11633415 11633444 chrX 11640469 11640498 297 5 7054 2.0 2.0 2.0 1.7 7083 chrX 11633415 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640498 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-639 1699 chrX 11922372 11922383 chrX 11922504 11922516 4 133 1.5 3.5 2.5 1.1 144 chrX 11922372 exon Sclp - chrX 11922444 intron Sclp - chrX 11922516 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-639 1700 chrX 12094035 12094066 chrX 12094126 12094158 5 92 2.0 2.5 2.2 1.6 123 chrX 12094035 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-639 1701 chrX 12157369 12157382 chrX 12157623 12157635 5 254 1.0 2.0 1.5 2.0 266 chrX 12157369 intron Ten-a + chrX 12157502 intron Ten-a + chrX 12157635 intron Ten-a + chrX_5_12155001 chrX_12155001 RAL-639 1702 chrX 12168137 12168160 chrX 12173579 12173601 I-element 4 5442 2.0 2.0 2.0 1.3 5464 chrX 12168137 intron Ten-a + chrX 12170869 intron Ten-a + chrX 12173601 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-639 1703 chrX 12301959 12301979 chrX 12303265 12303284 X-element 4 1305 2.0 1.0 1.5 1.6 1325 chrX 12301959 intron Ten-a + chrX 12302622 intron Ten-a + chrX 12303284 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-639 1704 chrX 12414304 12414324 chrX 12414639 12414652 5 333 0.5 1.5 1.0 2.5 348 chrX 12414304 intergenic not near genes chrX 12414478 intergenic not near genes chrX 12414652 intergenic not near genes chrX_5_12410001 chrX_12410001 RAL-639 1705 chrX 12723490 12723517 chrX 12723563 12723593 7 75 1.5 1.0 1.2 3.2 103 chrX 12723490 intron,intron Smr -,CR43963 - chrX 12723542 intron,intron Smr -,CR43963 - chrX 12723593 intron,intron Smr -,CR43963 - chrX_7_12720001 chrX_12720001 RAL-639 1706 chrX 12930600 12930609 chrX 12937715 12937725 HMS-Beagle 5 7116 2.0 3.0 2.5 1.4 7125 chrX 12930600 intron fne + chrX 12934162 intron fne + chrX 12937725 intron fne + chrX_5_12930001 chrX_12930001 RAL-639 1707 chrX 13172349 13172382 chrX 13172425 13172458 17 75 2.0 1.0 1.5 6.8 109 chrX 13172349 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172458 intron CG34411 - chrX_17_13170001 chrX_13170001 RAL-639 1708 chrX 13269207 13269220 chrX 13269283 13269296 4 76 0.0 0.0 0.0 4.0 89 chrX 13269207 intron HDAC4 - chrX 13269252 intron HDAC4 - chrX 13269296 intron HDAC4 - chrX_4_13265001 chrX_13265001 RAL-639 1709 chrX 13395950 13395975 chrX 13396025 13396051 4 76 3.5 1.5 2.5 1.1 101 chrX 13395950 5` UTR CR44621 + chrX 13396000 5` UTR CR44621 + chrX 13396051 5` UTR CR44621 + chrX_4_13395001 chrX_13395001 RAL-639 1710 chrX 13560564 13560595 chrX 13560644 13560674 5 80 4.0 1.0 2.5 1.4 110 chrX 13560564 intergenic not near genes chrX 13560619 intergenic not near genes chrX 13560674 intergenic not near genes chrX_5_13560001 chrX_13560001 RAL-639 1711 chrX 13907027 13907044 chrX 13907311 13907327 4 284 2.0 3.0 2.5 1.1 300 chrX 13907027 intron mamo - chrX 13907177 intron mamo - chrX 13907327 intron mamo - chrX_4_13905001 chrX_13905001 RAL-639 1712 chrX 13937983 13938008 chrX 13941254 13941279 I-element 6 3270 2.0 0.5 1.2 2.7 3296 chrX 13937983 intron mamo - chrX 13939631 intron mamo - chrX 13941279 intron mamo - chrX_6_13935001 chrX_13935001 RAL-639 1713 chrX 14131492 14131516 chrX 14131572 14131597 6 79 2.5 2.0 2.2 1.9 105 chrX 14131492 intergenic not near genes chrX 14131544 intergenic not near genes chrX 14131597 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-639 1714 chrX 14131518 14131521 chrX 14131570 14131602 4 66 1.5 2.0 1.8 1.4 84 chrX 14131518 intergenic not near genes chrX 14131560 intergenic not near genes chrX 14131602 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-639 1715 chrX 14139200 14139216 chrX 14139286 14139302 7 86 1.5 6.5 4.0 1.4 102 chrX 14139200 intergenic not near genes chrX 14139251 intergenic not near genes chrX 14139302 intergenic not near genes chrX_7_14135001 chrX_14135001 RAL-639 1716 chrX 14188073 14188093 chrX 14188156 14188176 6 83 1.0 2.0 1.5 2.4 103 chrX 14188073 intergenic CG12481 + chrX 14188124 intergenic CG12481 + chrX 14188176 intergenic CG12481 + chrX_6_14185001 chrX_14185001 RAL-639 1717 chrX 14209468 14209482 chrX 14209559 14209573 8 91 2.0 1.5 1.8 2.9 105 chrX 14209468 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209573 intron,intron l(1)G0007 +,l(1)G0469 - chrX_8_14205001 chrX_14205001 RAL-639 1718 chrX 14416309 14416336 chrX 14421076 14421103 F-element 4 4767 1.0 2.5 1.8 1.4 4794 chrX 14416309 intron dpr8 + chrX 14418706 intron dpr8 + chrX 14421103 intron dpr8 + chrX_4_14415001 chrX_14415001 RAL-639 1719 chrX 14563284 14563305 chrX 14563732 14563753 10 448 0.0 3.0 1.5 4.0 469 chrX 14563284 intergenic not near genes chrX 14563518 intergenic not near genes chrX 14563753 intergenic not near genes chrX_10_14560001 chrX_14560001 RAL-639 1720 chrX 14628183 14628211 chrX 14628272 14628302 6 87 1.5 2.0 1.8 2.1 119 chrX 14628183 intron NetA - chrX 14628242 intron NetA - chrX 14628302 intron NetA - chrX_6_14625001 chrX_14625001 RAL-639 1721 chrX 14636461 14636495 chrX 14641902 14641935 I-element 11 5437 3.0 2.0 2.5 3.1 5474 chrX 14636461 intron NetA - chrX 14639198 intron NetA - chrX 14641935 intron NetA - chrX_11_14635001 chrX_14635001 RAL-639 1722 chrX 14716862 14716870 chrX 14717180 14717210 5 336 3.0 0.5 1.8 1.8 348 chrX 14716862 intron NetB - chrX 14717036 intron NetB - chrX 14717210 intron NetB - chrX_5_14715001 chrX_14715001 RAL-639 1723 chrX 14778035 14778055 chrX 14782832 14782852 Doc 6 4797 1.5 2.0 1.8 2.1 4817 chrX 14778035 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782852 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-639 1724 chrX 14861923 14861950 chrX 14862137 14862170 8 215 5.0 11.0 8.0 0.9 247 chrX 14861923 intron Flo2 + chrX 14862046 intron Flo2 + chrX 14862170 intron Flo2 + chrX_8_14860001 chrX_14860001 RAL-639 1725 chrX 14936860 14936888 chrX 14946117 14946144 roo 6 9257 1.5 1.5 1.5 2.4 9284 chrX 14936860 intron pdgy - chrX 14941502 intron pdgy - chrX 14946144 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-639 1726 chrX 14968084 14968100 chrX 14968162 14968179 6 78 1.0 2.0 1.5 2.4 95 chrX 14968084 intron eag + chrX 14968132 intron eag + chrX 14968179 intron eag + chrX_6_14965001 chrX_14965001 RAL-639 1727 chrX 15047556 15047568 chrX 15047699 15047710 5 143 0.0 0.0 0.0 5.0 154 chrX 15047556 intron,intron hiw -,CG5541 + chrX 15047633 intron,intron hiw -,CG5541 + chrX 15047710 intron,intron hiw -,CG5541 + chrX_5_15045001 chrX_15045001 RAL-639 1728 chrX 15165071 15165101 chrX 15165169 15165199 12 98 2.5 4.0 3.2 2.9 128 chrX 15165071 intergenic not near genes chrX 15165135 intergenic not near genes chrX 15165199 intergenic not near genes chrX_12_15165001 chrX_15165001 RAL-639 1729 chrX 15273705 15273732 chrX 15274872 15274893 1360 6 1166 3.0 3.5 3.2 1.4 1188 chrX 15273705 intergenic not near genes chrX 15274299 intergenic not near genes chrX 15274893 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-639 1730 chrX 15277635 15277669 chrX 15277720 15277753 8 82 0.0 2.5 1.2 3.6 118 chrX 15277635 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277753 intergenic not near genes chrX_8_15275001 chrX_15275001 RAL-639 1731 chrX 15358327 15358341 chrX 15358415 15358429 4 88 1.0 3.5 2.2 1.2 102 chrX 15358327 intron acj6 - chrX 15358378 intron acj6 - chrX 15358429 intron acj6 - chrX_4_15355001 chrX_15355001 RAL-639 1732 chrX 15413047 15413062 chrX 15417349 15417363 Juan 4 4302 2.5 2.5 2.5 1.1 4316 chrX 15413047 intron Cngl - chrX 15415205 intron Cngl - chrX 15417363 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-639 1733 chrX 15435690 15435705 chrX 15436122 15436136 rover 4 432 0.0 4.5 2.2 1.2 446 chrX 15435690 intron Cngl - chrX 15435913 intron Cngl - chrX 15436136 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-639 1734 chrX 15591187 15591206 chrX 15591259 15591282 4 75 0.0 2.5 1.2 1.8 95 chrX 15591187 intron CG9220 - chrX 15591234 intron CG9220 - chrX 15591282 intron CG9220 - chrX_4_15590001 chrX_15590001 RAL-639 1735 chrX 15666213 15666226 chrX 15666289 15666302 4 76 6.0 4.0 5.0 0.7 89 chrX 15666213 intergenic not near genes chrX 15666258 intergenic not near genes chrX 15666302 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-639 1736 chrX 15749654 15749677 chrX 15749757 15749780 4 103 1.0 0.0 0.5 2.7 126 chrX 15749654 intron CG8239 + chrX 15749717 intron CG8239 + chrX 15749780 intron CG8239 + chrX_4_15745001 chrX_15745001 RAL-639 1737 chrX 16141410 16141434 chrX 16141541 16141561 5 130 2.5 2.5 2.5 1.4 151 chrX 16141410 intron disco-r - chrX 16141486 intron disco-r - chrX 16141561 intron disco-r - chrX_5_16140001 chrX_16140001 RAL-639 1738 chrX 16156707 16156733 chrX 16156813 16156839 9 106 1.5 5.0 3.2 2.1 132 chrX 16156707 intergenic not near genes chrX 16156773 intergenic not near genes chrX 16156839 intergenic not near genes chrX_9_16155001 chrX_16155001 RAL-639 1739 chrX 16179453 16179457 chrX 16179528 16179532 4 75 4.5 2.0 3.2 1.0 79 chrX 16179453 intergenic not near genes chrX 16179492 intergenic not near genes chrX 16179532 intergenic not near genes chrX_4_16175001 chrX_16175001 RAL-639 1740 chrX 16329435 16329441 chrX 16329518 16329524 4 83 0.0 2.5 1.2 1.8 89 chrX 16329435 intron CG9919 - chrX 16329480 intron CG9919 - chrX 16329524 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-639 1741 chrX 16492644 16492674 chrX 16498221 16498251 mdg3 9 5577 3.0 2.5 2.8 2.4 5607 chrX 16492644 intron para - chrX 16495448 intron para - chrX 16498251 intron para - chrX_9_16495001 chrX_16495001 RAL-639 1742 chrX 16650931 16650946 chrX 16651006 16651022 6 76 2.0 0.0 1.0 3.0 91 chrX 16650931 intergenic CG32573 +,CG42512 + chrX 16650976 intergenic CG32573 +,CG42512 + chrX 16651022 intergenic CG32573 +,CG42512 + chrX_6_16650001 chrX_16650001 RAL-639 1743 chrX 16951341 16951357 chrX 16951406 16951437 6 78 3.5 6.0 4.8 1.0 96 chrX 16951341 exon RhoGAP15B + chrX 16951389 exon RhoGAP15B + chrX 16951437 exon RhoGAP15B + chrX_6_16950001 chrX_16950001 RAL-639 1744 chrX 17089610 17089630 chrX 17089736 17089755 6 126 3.0 0.5 1.8 2.1 145 chrX 17089610 intergenic not near genes chrX 17089682 intergenic not near genes chrX 17089755 intergenic not near genes chrX_6_17085001 chrX_17085001 RAL-639 1745 chrX 17122638 17122673 chrX 17122729 17122747 7 88 1.0 2.0 1.5 2.8 109 chrX 17122638 intron CG5004 + chrX 17122692 intron CG5004 + chrX 17122747 intron CG5004 + chrX_7_17120001 chrX_17120001 RAL-639 1746 chrX 17195205 17195234 chrX 17200290 17200319 flea 5 5086 3.0 2.0 2.5 1.4 5114 chrX 17195205 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200319 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-639 1747 chrX 17352591 17352623 chrX 17352693 17352726 5 102 0.0 3.5 1.8 1.8 135 chrX 17352591 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352726 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-639 1748 chrX 17372340 17372368 chrX 17372432 17372458 4 92 0.5 2.5 1.5 1.6 118 chrX 17372340 intergenic not near genes chrX 17372399 intergenic not near genes chrX 17372458 intergenic not near genes chrX_4_17370001 chrX_17370001 RAL-639 1749 chrX 17680889 17680917 chrX 17680966 17680994 7 75 2.0 2.5 2.2 2.2 105 chrX 17680889 intron chas - chrX 17680942 intron chas - chrX 17680994 intron chas - chrX_7_17680001 chrX_17680001 RAL-639 1750 chrX 17716588 17716598 chrX 17716672 17716685 5 86 3.5 4.5 4.0 1.0 97 chrX 17716588 intron CG42684 + chrX 17716636 intron CG42684 + chrX 17716685 intron CG42684 + chrX_5_17715001 chrX_17715001 RAL-639 1751 chrX 17740392 17740402 chrX 17740448 17740474 4 70 1.5 3.0 2.2 1.2 82 chrX 17740392 intron CG42684 + chrX 17740433 intron CG42684 + chrX 17740474 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-639 1752 chrX 17766363 17766377 chrX 17766458 17766475 4 97 2.5 2.0 2.2 1.2 112 chrX 17766363 intergenic not near genes chrX 17766419 intergenic not near genes chrX 17766475 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-639 1753 chrX 17911851 17911870 chrX 17911939 17911958 5 88 0.0 0.5 0.2 4.2 107 chrX 17911851 intron CG6847 + chrX 17911904 intron CG6847 + chrX 17911958 intron CG6847 + chrX_5_17910001 chrX_17910001 RAL-639 1754 chrX 18126808 18126830 chrX 18126885 18126904 4 76 1.5 1.5 1.5 1.6 96 chrX 18126808 intron CG32553 - chrX 18126856 5` UTR CG32553 - chrX 18126904 intron CG32553 - chrX_4_18125001 chrX_18125001 RAL-639 1755 chrX 18194068 18194102 chrX 18194603 18194637 BS 8 535 2.5 1.5 2.0 2.7 569 chrX 18194068 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194637 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-639 1756 chrX 18341628 18341653 chrX 18342003 18342028 11 374 0.5 0.5 0.5 7.3 400 chrX 18341628 intron CG6123 - chrX 18341828 intron CG6123 - chrX 18342028 intron CG6123 - chrX_11_18340001 chrX_18340001 RAL-639 1757 chrX 18427384 18427408 chrX 18427795 18427819 4 411 3.0 3.0 3.0 1.0 435 chrX 18427384 intergenic CG42323 + chrX 18427602 intergenic not near genes chrX 18427819 intergenic not near genes chrX_4_18425001 chrX_18425001 RAL-639 1758 chrX 18429505 18429522 chrX 18434813 18434833 Transpac 4 5309 1.5 2.5 2.0 1.3 5328 chrX 18429505 intergenic not near genes chrX 18432169 intergenic not near genes chrX 18434833 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-639 1759 chrX 18486109 18486140 chrX 18486198 18486229 7 89 3.0 2.5 2.8 1.8 120 chrX 18486109 exon psh - chrX 18486169 intron psh - chrX 18486229 intron psh - chrX_7_18485001 chrX_18485001 RAL-639 1760 chrX 18558783 18558808 chrX 18558865 18558890 5 82 0.0 3.5 1.8 1.8 107 chrX 18558783 intron Bx + chrX 18558836 intron Bx + chrX 18558890 intron Bx + chrX_5_18555001 chrX_18555001 RAL-639 1761 chrX 18645012 18645032 chrX 18645110 18645130 7 98 4.5 1.5 3.0 1.8 118 chrX 18645012 intron Rip11 - chrX 18645071 intron Rip11 - chrX 18645130 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-639 1762 chrX 18698853 18698874 chrX 18698970 18698991 4 116 1.5 5.0 3.2 1.0 138 chrX 18698853 intergenic not near genes chrX 18698922 intergenic not near genes chrX 18698991 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-639 1763 chrX 18801448 18801475 chrX 18801536 18801546 6 84 8.5 2.0 5.2 1.0 98 chrX 18801448 intron Pk17E + chrX 18801497 intron Pk17E + chrX 18801546 intron Pk17E + chrX_6_18800001 chrX_18800001 RAL-639 1764 chrX 18888672 18888685 chrX 18888756 18888770 6 85 0.0 4.0 2.0 2.0 98 chrX 18888672 3` UTR CG7332 + chrX 18888721 3` UTR CG7332 + chrX 18888770 3` UTR CG7332 + chrX_6_18885001 chrX_18885001 RAL-639 1765 chrX 18896516 18896545 chrX 18896627 18896656 8 111 0.5 2.5 1.5 3.2 140 chrX 18896516 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896656 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-639 1766 chrX 18910390 18910419 chrX 18910480 18910509 6 90 1.5 1.0 1.2 2.7 119 chrX 18910390 3` UTR CG7378 + chrX 18910450 3` UTR CG7378 + chrX 18910509 3` UTR CG7378 + chrX_6_18910001 chrX_18910001 RAL-639 1767 chrX 18947509 18947528 chrX 18947602 18947621 4 93 4.0 3.5 3.8 0.8 112 chrX 18947509 intron CG43759 + chrX 18947565 intron CG43759 + chrX 18947621 intron CG43759 + chrX_4_18945001 chrX_18945001 RAL-639 1768 chrX 19060415 19060439 chrX 19065199 19065223 Doc 9 4784 1.5 3.5 2.5 2.6 4808 chrX 19060415 intron CG14190 + chrX 19062819 intron CG14190 + chrX 19065223 intron CG14190 + chrX_9_19060001 chrX_19060001 RAL-639 1769 chrX 19084104 19084122 chrX 19084224 19084242 5 120 0.0 1.0 0.5 3.3 138 chrX 19084104 intergenic CR45503 + chrX 19084173 intergenic CR45503 + chrX 19084242 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-639 1770 chrX 19099654 19099686 chrX 19099737 19099769 9 83 2.5 1.0 1.8 3.2 115 chrX 19099654 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099769 intergenic not near genes chrX_9_19095001 chrX_19095001 RAL-639 1771 chrX 19106826 19106845 chrX 19106902 19106921 5 76 6.0 0.5 3.2 1.2 95 chrX 19106826 intergenic not near genes chrX 19106874 intergenic not near genes chrX 19106921 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-639 1772 chrX 19124444 19124464 chrX 19124532 19124552 4 87 1.0 1.0 1.0 2.0 108 chrX 19124444 intergenic CG15882 - chrX 19124498 intergenic CG15882 - chrX 19124552 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-639 1773 chrX 19125695 19125719 chrX 19125824 19125847 6 129 2.0 4.5 3.2 1.4 152 chrX 19125695 intron tgy - chrX 19125771 intron tgy - chrX 19125847 intron tgy - chrX_6_19125001 chrX_19125001 RAL-639 1774 chrX 13057298 13057300 chrX 19242812 19242814 15 6185514 6.0 7.5 6.8 1.9 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_15_16150001 chrX_16150001 RAL-639 1775 chrX 19345421 19345454 chrX 19345501 19345534 4 80 0.0 1.5 0.8 2.2 113 chrX 19345421 intron nAChRalpha7 - chrX 19345478 intron nAChRalpha7 - chrX 19345534 intron nAChRalpha7 - chrX_4_19345001 chrX_19345001 RAL-639 1776 chrX 16983076 16983076 chrX 19404963 19404965 5 2421888 8.0 11.0 9.5 0.5 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_5_18190001 chrX_18190001 RAL-639 1777 chrX 19430542 19430564 chrX 19430640 19430662 6 98 2.5 0.5 1.5 2.4 120 chrX 19430542 intron kek5 + chrX 19430602 intron kek5 + chrX 19430662 intron kek5 + chrX_6_19430001 chrX_19430001 RAL-639 1778 chrX 19447092 19447105 chrX 19447351 19447364 4 258 4.0 1.0 2.5 1.1 272 chrX 19447092 intron kek5 + chrX 19447228 intron kek5 + chrX 19447364 intron kek5 + chrX_4_19445001 chrX_19445001 RAL-639 1779 chrX 19472128 19472152 chrX 19472698 19472722 jockey 6 563 1.0 4.5 2.8 1.6 594 chrX 19472128 intergenic kek5 + chrX 19472425 intergenic not near genes chrX 19472722 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-639 1780 chrX 19500561 19500743 chrX 19500638 19500830 11 82 0.0 3.5 1.8 3.9 269 chrX 19500561 intron,intron CG14200 +,Pfrx + chrX 19500696 intron,intron CG14200 +,Pfrx + chrX 19500830 intron,intron CG14200 +,Pfrx + chrX_11_19500001 chrX_19500001 RAL-639 1781 chrX 19560675 19560688 chrX 19560774 19560787 7 99 1.5 3.0 2.2 2.2 112 chrX 19560675 3` UTR Grip84 - chrX 19560731 3` UTR Grip84 - chrX 19560787 3` UTR Grip84 - chrX_7_19560001 chrX_19560001 RAL-639 1782 chrX 19593954 19593974 chrX 19594038 19594059 7 84 3.0 5.5 4.2 1.3 105 chrX 19593954 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594059 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-639 1783 chrX 19710071 19710104 chrX 19711857 19711890 S-element 11 1785 1.0 4.5 2.8 2.9 1819 chrX 19710071 intron meso18E - chrX 19710980 intron meso18E - chrX 19711890 intron meso18E - chrX_11_19710001 chrX_19710001 RAL-639 1784 chrX 19744626 19744661 chrX 19744752 19744785 4 122 19.5 19.5 19.5 0.2 159 chrX 19744626 5` UTR,exon CG33932 +,Rpp20 + chrX 19744706 intron,intron CG33932 +,Rpp20 + chrX 19744785 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-639 1785 chrX 19822828 19822861 chrX 19822995 19823028 10 166 4.5 3.5 4.0 2.0 200 chrX 19822828 intergenic not near genes chrX 19822928 intergenic skpE - chrX 19823028 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-639 1786 chrX 19838504 19838513 chrX 19838582 19838586 5 77 8.0 0.0 4.0 1.0 82 chrX 19838504 intron pico - chrX 19838545 intron pico - chrX 19838586 intron pico - chrX_5_19835001 chrX_19835001 RAL-639 1787 chrX 19881459 19881485 chrX 19881538 19881566 8 80 1.0 2.0 1.5 3.2 107 chrX 19881459 intron Hers + chrX 19881512 intron Hers + chrX 19881566 intron Hers + chrX_8_19880001 chrX_19880001 RAL-639 1788 chrX 19983866 19983895 chrX 19983946 19983974 4 80 0.5 0.0 0.2 3.3 108 chrX 19983866 intergenic not near genes chrX 19983920 intergenic not near genes chrX 19983974 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-639 1789 chrX 20052790 20052815 chrX 20052872 20052896 4 82 1.5 0.0 0.8 2.2 106 chrX 20052790 intron Dop2R - chrX 20052843 intron Dop2R - chrX 20052896 intron Dop2R - chrX_4_20050001 chrX_20050001 RAL-639 1790 chrX 20105195 20105231 chrX 20105298 20105334 8 107 28.0 24.0 26.0 0.3 139 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105334 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-639 1791 chrX 20369321 20369341 chrX 20369405 20369424 7 84 1.0 2.0 1.5 2.8 103 chrX 20369321 intergenic not near genes chrX 20369372 intergenic not near genes chrX 20369424 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-639 1792 chrX 20374104 20374125 chrX 20374179 20374201 10 75 1.0 3.5 2.2 3.1 97 chrX 20374104 intergenic not near genes chrX 20374152 intergenic not near genes chrX 20374201 intergenic not near genes chrX_10_20370001 chrX_20370001 RAL-639 1793 chrX 20377326 20377332 chrX 20378793 20378799 hobo 4 1467 3.5 3.5 3.5 0.9 1473 chrX 20377326 intergenic not near genes chrX 20378062 intergenic not near genes chrX 20378799 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-639 1794 chrX 20528602 20528632 chrX 20528949 20528980 13 348 0.5 2.0 1.2 5.9 378 chrX 20528602 intergenic not near genes chrX 20528791 intergenic not near genes chrX 20528980 intergenic not near genes chrX_13_20525001 chrX_20525001 RAL-639 1795 chrX 20583737 20583756 chrX 20583895 20583907 5 164 2.0 0.0 1.0 2.5 170 chrX 20583737 intergenic not near genes chrX 20583822 intergenic not near genes chrX 20583907 intergenic not near genes chrX_5_20580001 chrX_20580001 RAL-639 1796 chrX 20810719 20810730 chrX 20810797 20810808 4 78 3.5 0.5 2.0 1.3 89 chrX 20810719 intron shakB - chrX 20810764 intron shakB - chrX 20810808 intron shakB - chrX_4_20810001 chrX_20810001 RAL-639 1797 chrX 20915045 20915066 chrX 20915216 20915233 4 170 1.5 1.0 1.2 1.8 188 chrX 20915045 intron shakB - chrX 20915139 intron shakB - chrX 20915233 intron shakB - chrX_4_20915001 chrX_20915001 RAL-639 1798 chrX 20940720 20940756 chrX 20942189 20942223 hobo 10 1468 2.5 3.0 2.8 2.6 1503 chrX 20940720 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942223 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-639 1799 chrX 20981027 20981055 chrX 20981130 20981158 5 103 0.5 2.0 1.2 2.3 131 chrX 20981027 intergenic not near genes chrX 20981092 intergenic not near genes chrX 20981158 intergenic not near genes chrX_5_20980001 chrX_20980001 RAL-639 1800 chrX 21061877 21061895 chrX 21062363 21062379 roo 4 485 0.0 2.5 1.2 1.8 502 chrX 21061877 intron bves + chrX 21062128 intron bves + chrX 21062379 intron,3` UTR bves +,CG32512 - chrX_4_21060001 chrX_21060001 RAL-639 1801 chrX 21086140 21086160 chrX 21087165 21087188 jockey 8 1025 1.0 1.5 1.2 3.6 1048 chrX 21086140 intergenic not near genes chrX 21086664 intergenic not near genes chrX 21087188 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-639 1802 chrX 21088044 21088073 chrX 21088175 21088205 5 127 1.5 0.5 1.0 2.5 161 chrX 21088044 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088205 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-639 1803 chrX 21197058 21197089 chrX 21197135 21197162 7 74 0.5 3.0 1.8 2.5 104 chrX 21197058 intergenic not near genes chrX 21197110 intergenic not near genes chrX 21197162 intergenic not near genes chrX_7_21195001 chrX_21195001 RAL-639 1804 chrX 21268069 21268078 chrX 21268150 21268155 4 80 2.5 2.0 2.2 1.2 86 chrX 21268069 intron CG32521 - chrX 21268112 intron CG32521 - chrX 21268155 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-639 1805 chrX 21328119 21328136 chrX 21328230 21328247 6 111 0.5 1.0 0.8 3.3 128 chrX 21328119 3` UTR CG1486 + chrX 21328183 intergenic CG1486 +,tty - chrX 21328247 intergenic CG1486 +,tty - chrX_6_21325001 chrX_21325001 RAL-639 1806 chrX 21358076 21358095 chrX 21358156 21358173 6 79 0.0 1.5 0.8 3.3 97 chrX 21358076 intergenic sol +,Sep1 + chrX 21358124 intergenic Sep1 +,sol + chrX 21358173 intergenic Sep1 +,sol + chrX_6_21355001 chrX_21355001 RAL-639 1807 chrX 21428338 21428369 chrX 21428527 21428545 6 187 1.0 0.0 0.5 4.0 207 chrX 21428338 intron CG42343 - chrX 21428442 intron CG42343 - chrX 21428545 intron CG42343 - chrX_6_21425001 chrX_21425001 RAL-639 1808 chrX 21458690 21458721 chrX 21464126 21464157 Ivk 4 5436 4.0 4.5 4.2 0.8 5467 chrX 21458690 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464157 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-639 1809 chrX 21517001 21517012 chrX 21517073 21517091 4 77 5.0 3.0 4.0 0.8 90 chrX 21517001 intron CR45082 - chrX 21517046 intron CR45082 - chrX 21517091 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-639 1810 chrX 21565412 21565443 chrX 21565490 21565521 7 78 1.0 1.5 1.2 3.2 109 chrX 21565412 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565521 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-639 1811 chrX 21668256 21668274 chrX 21668341 21668351 4 83 11.0 4.5 7.8 0.5 95 chrX 21668256 intergenic not near genes chrX 21668304 intergenic not near genes chrX 21668351 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-639 1812 chrX 22478882 22478890 chrX 22479015 22479023 4 133 0.0 1.5 0.8 2.2 141 chrX 22478882 intron CG12576 - chrX 22478952 intron CG12576 - chrX 22479023 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-639 1813 chrX 22564562 22564577 chrX 22575134 22575149 jockey 4 10572 7.5 5.0 6.2 0.6 10587 chrX 22564562 intergenic not near genes chrX 22569856 intergenic not near genes chrX 22575149 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-639 1814 chrX 22661979 22662002 chrX 22662078 22662101 6 99 0.0 1.5 0.8 3.3 122 chrX 22661979 intron CR44997 + chrX 22662040 intron CR44997 + chrX 22662101 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-639 1815 chrX 22771504 22771534 chrX 22774795 22774825 297 6 3291 2.5 2.0 2.2 1.9 3321 chrX 22771504 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774825 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-639 1816 chrX 22784080 22784105 chrX 22784163 22784188 9 83 1.5 0.5 1.0 4.5 108 chrX 22784080 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784188 intron CR44997 + chrX_9_22780001 chrX_22780001 RAL-639 1817 chrX 22824232 22824439 chrX 22824358 22824572 6 129 1.5 0.0 0.8 3.3 340 chrX 22824232 intergenic fog - chrX 22824402 3` UTR fog - chrX 22824572 3` UTR fog - chrX_6_22820001 chrX_22820001 RAL-639 1818 chrX 22867981 22868009 chrX 22868095 22868123 10 113 1.5 0.0 0.8 5.6 142 chrX 22867981 exon CG42346 + chrX 22868052 intron CG42346 + chrX 22868123 intron CG42346 + chrX_10_22865001 chrX_22865001 RAL-639 1819 chrX 22908987 22908995 chrX 22913201 22913220 Burdock 4 4222 1.0 1.5 1.2 1.8 4233 chrX 22908987 intergenic not near genes chrX 22911104 intergenic not near genes chrX 22913220 intergenic not near genes chrX_4_22910001 chrX_22910001 RAL-639 1820 chrX 22996324 22996339 chrX 23003558 23003573 roo 7 7233 1.5 5.5 3.5 1.6 7249 chrX 22996324 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-639 1821 chrY 975598 975807 chrY 975715 975914 8 108 117.0 102.0 109.5 0.1 316 chrY 975598 intergenic not near genes chrY 975756 intergenic not near genes chrY 975914 intergenic not near genes chrY_8_975001 chrY_975001 RAL-639