SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47488 chr2L 52564 52592 jockey 11 5104 5.0 1.0 3.0 2.8 5133 chr2L 47459 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-59 2 chr2L 325130 325148 chr2L 325207 325225 7 77 6.5 7.0 6.8 0.9 95 chr2L 325130 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325225 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-59 3 chr2L 347889 347916 chr2L 355389 355416 blood 6 7500 1.5 1.0 1.2 2.7 7527 chr2L 347889 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355416 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-59 4 chr2L 489536 489567 chr2L 489620 489652 12 83 0.0 2.5 1.2 5.5 116 chr2L 489536 intron ush + chr2L 489594 intron ush + chr2L 489652 intron ush + chr2L_12_485001 chr2L_485001 RAL-59 5 chr2L 597170 597197 chr2L 597288 597315 11 123 25.0 22.0 23.5 0.4 145 chr2L 597170 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597315 intergenic not near genes chr2L_11_595001 chr2L_595001 RAL-59 6 chr2L 686918 686948 chr2L 695958 695988 roo 9 9040 2.5 1.5 2.0 3.0 9070 chr2L 686918 intron ds - chr2L 691453 intron ds - chr2L 695988 intron ds - chr2L_9_690001 chr2L_690001 RAL-59 7 chr2L 763596 763625 chr2L 763670 763701 11 76 4.0 3.5 3.8 2.3 105 chr2L 763596 intergenic not near genes chr2L 763648 intergenic not near genes chr2L 763701 intergenic not near genes chr2L_11_760001 chr2L_760001 RAL-59 8 chr2L 770466 770478 chr2L 772247 772247 Bari1 4 1778 5.0 5.0 5.0 0.7 1781 chr2L 770466 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772247 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-59 9 chr2L 799296 799324 chr2L 799373 799400 9 74 1.5 6.0 3.8 1.9 104 chr2L 799296 intergenic not near genes chr2L 799348 intergenic not near genes chr2L 799400 intergenic CR45259 + chr2L_9_795001 chr2L_795001 RAL-59 10 chr2L 877844 877863 chr2L 877925 877944 12 81 6.5 4.5 5.5 1.8 100 chr2L 877844 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_12_875001 chr2L_875001 RAL-59 11 chr2L 922468 922493 chr2L 922549 922574 8 80 1.5 5.0 3.2 1.9 106 chr2L 922468 intergenic CG4341 + chr2L 922521 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-59 12 chr2L 931632 931667 chr2L 931711 931741 13 78 3.5 1.5 2.5 3.7 109 chr2L 931632 intron CG4341 + chr2L 931686 intron CG4341 + chr2L 931741 intron CG4341 + chr2L_13_930001 chr2L_930001 RAL-59 13 chr2L 1066095 1066126 chr2L 1066173 1066201 9 80 2.0 3.0 2.5 2.6 106 chr2L 1066095 intron S - chr2L 1066148 intron S - chr2L 1066201 intron S - chr2L_9_1065001 chr2L_1065001 RAL-59 14 chr2L 1156860 1156874 chr2L 1156965 1156975 5 104 4.0 1.0 2.5 1.4 115 chr2L 1156860 intron capt - chr2L 1156918 intron capt - chr2L 1156975 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-59 15 chr2L 1220133 1220152 chr2L 1227599 1227615 blood 9 7466 4.0 1.5 2.8 2.4 7482 chr2L 1220133 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227615 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-59 16 chr2L 1336938 1336943 chr2L 1337181 1337186 4 243 3.0 1.5 2.2 1.2 248 chr2L 1336938 intergenic not near genes chr2L 1337062 intergenic not near genes chr2L 1337186 intergenic not near genes chr2L_4_1335001 chr2L_1335001 RAL-59 17 chr2L 1343529 1343553 chr2L 1343722 1343746 4 192 2.0 0.0 1.0 2.0 217 chr2L 1343529 exon CG33922 - chr2L 1343638 intron CG33922 - chr2L 1343746 exon CG33922 - chr2L_4_1340001 chr2L_1340001 RAL-59 18 chr2L 1392569 1392601 chr2L 1392683 1392692 11 109 4.0 3.5 3.8 2.3 123 chr2L 1392569 intron lea - chr2L 1392630 intron lea - chr2L 1392692 exon lea - chr2L_11_1390001 chr2L_1390001 RAL-59 19 chr2L 1536509 1536524 chr2L 1536641 1536655 5 132 0.5 5.5 3.0 1.2 146 chr2L 1536509 intergenic not near genes chr2L 1536582 intergenic not near genes chr2L 1536655 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-59 20 chr2L 1568824 1568853 chr2L 1568923 1568952 7 98 3.0 4.0 3.5 1.6 128 chr2L 1568824 intron haf + chr2L 1568888 intron haf + chr2L 1568952 intron haf + chr2L_7_1565001 chr2L_1565001 RAL-59 21 chr2L 1570705 1570713 chr2L 1573577 1573585 F-element 4 2872 2.0 2.0 2.0 1.3 2880 chr2L 1570705 intron haf + chr2L 1572145 intron haf + chr2L 1573585 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-59 22 chr2L 1711354 1711387 chr2L 1711678 1711711 mdg3 14 322 4.0 2.5 3.2 3.3 357 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_14_1710001 chr2L_1710001 RAL-59 23 chr2L 2100381 2100406 chr2L 2109532 2109556 roo 5 9151 2.0 3.0 2.5 1.4 9175 chr2L 2100381 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109556 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-59 24 chr2L 2112121 2112145 chr2L 2119773 2119807 opus 7 7660 2.0 5.5 3.8 1.5 7686 chr2L 2112121 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-59 25 chr2L 2260805 2260837 chr2L 2260890 2260923 5 86 3.5 2.5 3.0 1.2 118 chr2L 2260805 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260923 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-59 26 chr2L 2262319 2262331 chr2L 2262396 2262408 4 77 4.0 0.0 2.0 1.3 89 chr2L 2262319 intergenic not near genes chr2L 2262364 intergenic not near genes chr2L 2262408 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-59 27 chr2L 2294045 2294075 chr2L 2299250 2299280 copia 8 5202 2.5 3.0 2.8 2.1 5235 chr2L 2294045 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-59 28 chr2L 2587818 2587847 chr2L 2587897 2587926 11 78 1.0 7.0 4.0 2.2 108 chr2L 2587818 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587926 intergenic not near genes chr2L_11_2585001 chr2L_2585001 RAL-59 29 chr2L 2661195 2661232 chr2L 2663031 2663058 I-element 12 1833 1.0 2.5 1.8 4.3 1863 chr2L 2661195 intergenic not near genes chr2L 2662126 intergenic not near genes chr2L 2663058 intergenic not near genes chr2L_12_2660001 chr2L_2660001 RAL-59 30 chr2L 2895689 2895718 chr2L 2895775 2895803 9 86 1.0 1.5 1.2 4.1 114 chr2L 2895689 intron lilli + chr2L 2895746 intron lilli + chr2L 2895803 intron lilli + chr2L_9_2895001 chr2L_2895001 RAL-59 31 chr2L 2937426 2937437 chr2L 2937503 2937513 5 76 1.5 1.0 1.2 2.3 87 chr2L 2937426 intron lilli + chr2L 2937470 intron lilli + chr2L 2937513 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-59 32 chr2L 3087383 3087415 chr2L 3087491 3087522 9 106 3.0 2.0 2.5 2.6 139 chr2L 3087383 intron toc - chr2L 3087452 intron toc - chr2L 3087522 intron toc - chr2L_9_3085001 chr2L_3085001 RAL-59 33 chr2L 3108872 3108895 chr2L 3108949 3108972 11 77 1.5 2.5 2.0 3.7 100 chr2L 3108872 intron toc - chr2L 3108922 intron toc - chr2L 3108972 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-59 34 chr2L 3113425 3113435 chr2L 3113520 3113530 4 94 0.0 1.0 0.5 2.7 105 chr2L 3113425 intron toc - chr2L 3113478 intron toc - chr2L 3113530 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-59 35 chr2L 3135088 3135120 chr2L 3135214 3135249 5 128 5.5 3.5 4.5 0.9 161 chr2L 3135088 intron toc - chr2L 3135168 intron toc - chr2L 3135249 intron toc - chr2L_5_3135001 chr2L_3135001 RAL-59 36 chr2L 3172070 3172101 chr2L 3172165 3172196 17 95 5.0 7.0 6.0 2.4 126 chr2L 3172070 intergenic not near genes chr2L 3172133 intergenic not near genes chr2L 3172196 intergenic not near genes chr2L_17_3170001 chr2L_3170001 RAL-59 37 chr2L 3291255 3291269 chr2L 3291335 3291349 6 80 1.5 9.5 5.5 0.9 94 chr2L 3291255 3` UTR CG9664 - chr2L 3291302 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-59 38 chr2L 3294365 3294388 chr2L 3294462 3294485 6 97 2.5 3.0 2.8 1.6 120 chr2L 3294365 5` UTR CG9664 - chr2L 3294425 5` UTR CG9664 - chr2L 3294485 5` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-59 39 chr2L 3323256 3323280 chr2L 3323363 3323387 10 106 3.0 3.5 3.2 2.4 131 chr2L 3323256 intergenic CG8837 + chr2L 3323322 intergenic CG8837 + chr2L 3323387 intergenic CG8837 + chr2L_10_3320001 chr2L_3320001 RAL-59 40 chr2L 3508355 3508369 chr2L 3508433 3508447 5 78 0.0 2.0 1.0 2.5 92 chr2L 3508355 intergenic tim -,CR45299 + chr2L 3508401 intergenic CR45299 +,tim - chr2L 3508447 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-59 41 chr2L 3582883 3582910 chr2L 3582960 3582987 6 77 1.5 3.0 2.2 1.9 104 chr2L 3582883 intergenic not near genes chr2L 3582935 intergenic not near genes chr2L 3582987 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-59 42 chr2L 3601088 3601090 chr2L 3601173 3601175 4 85 5.5 0.0 2.8 1.1 87 chr2L 3601088 intergenic not near genes chr2L 3601132 intergenic not near genes chr2L 3601175 intergenic not near genes chr2L_4_3600001 chr2L_3600001 RAL-59 43 chr2L 3717186 3717217 chr2L 3717295 3717326 10 108 3.5 7.0 5.2 1.6 140 chr2L 3717186 exon lectin-24A - chr2L 3717256 exon lectin-24A - chr2L 3717326 exon lectin-24A - chr2L_10_3715001 chr2L_3715001 RAL-59 44 chr2L 3784808 3784826 chr2L 3785667 3785685 5 859 6.0 4.5 5.2 0.8 877 chr2L 3784808 intergenic CG31960 + chr2L 3785246 exon CG31960 + chr2L 3785685 intergenic CG31958 +,CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-59 45 chr2L 3785603 3785609 chr2L 3786375 3786381 4 772 8.5 14.0 11.2 0.3 778 chr2L 3785603 3` UTR CG31960 + chr2L 3785992 exon CG31958 + chr2L 3786381 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-59 46 chr2L 3784705 3784720 chr2L 3786362 3786380 5 1658 21.5 14.0 17.8 0.3 1675 chr2L 3784705 intergenic CG31960 + chr2L 3785542 3` UTR CG31960 + chr2L 3786380 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-59 47 chr2L 3819039 3819060 chr2L 3819121 3819142 7 82 2.0 0.0 1.0 3.5 103 chr2L 3819039 intergenic not near genes chr2L 3819090 intergenic not near genes chr2L 3819142 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-59 48 chr2L 3831838 3831862 chr2L 3831918 3831943 4 81 1.5 0.5 1.0 2.0 105 chr2L 3831838 intergenic not near genes chr2L 3831890 intergenic not near genes chr2L 3831943 intergenic not near genes chr2L_4_3830001 chr2L_3830001 RAL-59 49 chr2L 3891891 3891923 chr2L 3891976 3892008 10 84 1.5 2.0 1.8 3.6 117 chr2L 3891891 intron capu - chr2L 3891950 intron capu - chr2L 3892008 intron capu - chr2L_10_3890001 chr2L_3890001 RAL-59 50 chr2L 3943801 3943819 chr2L 3943892 3943910 6 91 0.5 1.0 0.8 3.3 109 chr2L 3943801 intron fred - chr2L 3943856 intron fred - chr2L 3943910 intron fred - chr2L_6_3940001 chr2L_3940001 RAL-59 51 chr2L 4062120 4062148 chr2L 4062201 4062229 10 80 0.0 2.5 1.2 4.5 109 chr2L 4062120 intron ed + chr2L 4062174 intron ed + chr2L 4062229 intron ed + chr2L_10_4060001 chr2L_4060001 RAL-59 52 chr2L 4066040 4066056 chr2L 4068865 4068881 Juan 5 2825 2.0 2.0 2.0 1.7 2841 chr2L 4066040 intron ed + chr2L 4067460 intron ed + chr2L 4068881 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-59 53 chr2L 4159409 4159438 chr2L 4159609 4159638 6 200 3.0 4.0 3.5 1.3 229 chr2L 4159409 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159638 intergenic not near genes chr2L_6_4155001 chr2L_4155001 RAL-59 54 chr2L 4181293 4181304 chr2L 4183925 4183936 Burdock 4 2632 1.0 5.5 3.2 1.0 2643 chr2L 4181293 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-59 55 chr2L 4317880 4317901 chr2L 4317958 4317977 9 78 2.5 4.5 3.5 2.0 97 chr2L 4317880 intron tutl + chr2L 4317928 intron tutl + chr2L 4317977 intron tutl + chr2L_9_4315001 chr2L_4315001 RAL-59 56 chr2L 4351479 4351501 chr2L 4351555 4351577 10 76 2.0 3.0 2.5 2.9 98 chr2L 4351479 intergenic CR44700 + chr2L 4351528 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_10_4350001 chr2L_4350001 RAL-59 57 chr2L 4601702 4601735 chr2L 4609143 4609176 mdg1 19 7441 3.0 4.0 3.5 4.2 7474 chr2L 4601702 intron dp - chr2L 4605439 intron dp - chr2L 4609176 intron dp - chr2L_19_4605001 chr2L_4605001 RAL-59 58 chr2L 4803895 4803914 chr2L 4803979 4803998 4 84 0.5 6.5 3.5 0.9 103 chr2L 4803895 intergenic not near genes chr2L 4803946 intergenic not near genes chr2L 4803998 intergenic not near genes chr2L_4_4800001 chr2L_4800001 RAL-59 59 chr2L 5120973 5121004 chr2L 5121067 5121098 11 94 1.0 2.5 1.8 3.9 125 chr2L 5120973 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_11_5120001 chr2L_5120001 RAL-59 60 chr2L 5262528 5262546 chr2L 5262605 5262623 5 77 7.0 3.0 5.0 0.8 95 chr2L 5262528 intron tkv - chr2L 5262576 intron tkv - chr2L 5262623 intron tkv - chr2L_5_5260001 chr2L_5260001 RAL-59 61 chr2L 5500052 5500075 chr2L 5500138 5500161 8 86 1.5 6.0 3.8 1.7 109 chr2L 5500052 intergenic not near genes chr2L 5500106 intergenic not near genes chr2L 5500161 intergenic not near genes chr2L_8_5500001 chr2L_5500001 RAL-59 62 chr2L 5827717 5827735 chr2L 5836725 5836742 roo 5 9008 5.5 2.0 3.8 1.0 9025 chr2L 5827717 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836742 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-59 63 chr2L 5902109 5902142 chr2L 5902200 5902233 10 90 2.0 1.5 1.8 3.6 124 chr2L 5902109 intergenic not near genes chr2L 5902171 intergenic not near genes chr2L 5902233 intergenic not near genes chr2L_10_5900001 chr2L_5900001 RAL-59 64 chr2L 5905610 5905642 chr2L 5905801 5905833 8 191 0.5 2.0 1.2 3.6 223 chr2L 5905610 3` UTR CR43808 - chr2L 5905722 3` UTR CR43808 - chr2L 5905833 3` UTR CR43808 - chr2L_8_5905001 chr2L_5905001 RAL-59 65 chr2L 6182083 6182105 chr2L 6182172 6182194 5 89 5.0 1.0 3.0 1.2 111 chr2L 6182083 intron CG34380 + chr2L 6182138 intron CG34380 + chr2L 6182194 intron CG34380 + chr2L_5_6180001 chr2L_6180001 RAL-59 66 chr2L 6185440 6185471 chr2L 6185517 6185549 5 78 2.5 2.0 2.2 1.6 109 chr2L 6185440 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-59 67 chr2L 6363156 6363183 chr2L 6366078 6366109 Burdock 6 2924 1.5 3.5 2.5 1.7 2953 chr2L 6363156 intergenic not near genes chr2L 6364632 intergenic not near genes chr2L 6366109 intergenic not near genes chr2L_6_6360001 chr2L_6360001 RAL-59 68 chr2L 6426859 6426888 chr2L 6445119 6445148 roo 12 18260 2.5 3.0 2.8 3.2 18289 chr2L 6426859 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-59 69 chr2L 6544377 6544395 chr2L 6544469 6544486 4 92 3.0 3.0 3.0 1.0 109 chr2L 6544377 intron eya - chr2L 6544432 intron eya - chr2L 6544486 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-59 70 chr2L 6626886 6626910 chr2L 6626971 6626995 6 85 3.0 3.5 3.2 1.4 109 chr2L 6626886 intron Oatp26F - chr2L 6626940 intron Oatp26F - chr2L 6626995 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-59 71 chr2L 6771984 6772019 chr2L 6772071 6772105 12 85 2.5 3.0 2.8 3.2 121 chr2L 6771984 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772105 intron CG11321 - chr2L_12_6770001 chr2L_6770001 RAL-59 72 chr2L 6876774 6876800 chr2L 6882964 6882991 diver 8 6190 5.5 4.0 4.8 1.4 6217 chr2L 6876774 intron Nlg2 + chr2L 6879882 intron Nlg2 + chr2L 6882991 intron Nlg2 + chr2L_8_6875001 chr2L_6875001 RAL-59 73 chr2L 6891451 6891470 chr2L 6891549 6891564 4 97 1.5 2.0 1.8 1.4 113 chr2L 6891451 intron Nlg2 + chr2L 6891508 intron Nlg2 + chr2L 6891564 intron Nlg2 + chr2L_4_6890001 chr2L_6890001 RAL-59 74 chr2L 7019569 7019586 chr2L 7019645 7019662 5 76 2.0 1.5 1.8 1.8 93 chr2L 7019569 intron ade3 - chr2L 7019616 intron ade3 - chr2L 7019662 intron ade3 - chr2L_5_7015001 chr2L_7015001 RAL-59 75 chr2L 7119039 7119072 chr2L 7119214 7119247 13 174 3.5 2.0 2.8 3.4 208 chr2L 7119039 intron Pvf3 - chr2L 7119143 intron Pvf3 - chr2L 7119247 intron Pvf3 - chr2L_13_7115001 chr2L_7115001 RAL-59 76 chr2L 7325921 7325938 chr2L 7325998 7326023 5 83 3.5 2.5 3.0 1.2 102 chr2L 7325921 intergenic not near genes chr2L 7325972 intergenic not near genes chr2L 7326023 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-59 77 chr2L 7331681 7331694 chr2L 7331777 7331784 5 95 4.0 1.5 2.8 1.3 103 chr2L 7331681 intergenic not near genes chr2L 7331732 intergenic not near genes chr2L 7331784 intergenic not near genes chr2L_5_7330001 chr2L_7330001 RAL-59 78 chr2L 7343323 7343351 chr2L 7350439 7350467 roo 6 7116 3.5 2.5 3.0 1.5 7144 chr2L 7343323 intron Wnt6 + chr2L 7346895 intron Wnt6 + chr2L 7350467 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-59 79 chr2L 7405779 7405787 chr2L 7405859 7405867 5 80 5.0 0.0 2.5 1.4 88 chr2L 7405779 intron CG5177 + chr2L 7405823 intron CG5177 + chr2L 7405867 intron CG5177 + chr2L_5_7405001 chr2L_7405001 RAL-59 80 chr2L 7493683 7493699 chr2L 7493890 7493910 4 210 3.0 1.5 2.2 1.2 227 chr2L 7493683 intron Ziz - chr2L 7493796 intron Ziz - chr2L 7493910 intron Ziz - chr2L_4_7490001 chr2L_7490001 RAL-59 81 chr2L 7516168 7516193 chr2L 7516250 7516280 7 86 0.0 1.0 0.5 4.7 112 chr2L 7516168 intron RapGAP1 - chr2L 7516224 intron RapGAP1 - chr2L 7516280 intron RapGAP1 - chr2L_7_7515001 chr2L_7515001 RAL-59 82 chr2L 7704554 7704563 chr2L 7704630 7704639 5 76 2.0 1.0 1.5 2.0 85 chr2L 7704554 intron Tep3 + chr2L 7704596 intron Tep3 + chr2L 7704639 intron Tep3 + chr2L_5_7700001 chr2L_7700001 RAL-59 83 chr2L 7775643 7775665 chr2L 7775735 7775757 5 92 2.0 2.5 2.2 1.6 114 chr2L 7775643 intergenic CG7179 - chr2L 7775700 intergenic CG7179 - chr2L 7775757 intergenic CG7179 - chr2L_5_7775001 chr2L_7775001 RAL-59 84 chr2L 7959046 7959064 chr2L 7960457 7960475 pogo 7 1411 2.5 0.0 1.2 3.2 1429 chr2L 7959046 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960475 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-59 85 chr2L 7977090 7977111 chr2L 7984066 7984087 297 6 6976 1.0 4.5 2.8 1.6 6997 chr2L 7977090 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-59 86 chr2L 8044101 8044129 chr2L 8044180 8044208 4 79 1.0 3.5 2.2 1.2 107 chr2L 8044101 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-59 87 chr2L 8244735 8244746 chr2L 8244853 8244868 6 121 0.5 4.5 2.5 1.7 133 chr2L 8244735 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244868 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-59 88 chr2L 8286304 8286329 chr2L 8286390 8286416 6 87 0.5 7.5 4.0 1.2 112 chr2L 8286304 intron Btk29A - chr2L 8286360 intron Btk29A - chr2L 8286416 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-59 89 chr2L 8418143 8418178 chr2L 8418242 8418277 13 98 2.5 1.0 1.8 4.6 134 chr2L 8418143 intron Akap200 + chr2L 8418210 intron Akap200 + chr2L 8418277 intron Akap200 + chr2L_13_8415001 chr2L_8415001 RAL-59 90 chr2L 8498212 8498234 chr2L 8498293 8498315 4 81 0.0 1.5 0.8 2.2 103 chr2L 8498212 intron Dh31 - chr2L 8498264 intron Dh31 - chr2L 8498315 intron Dh31 - chr2L_4_8495001 chr2L_8495001 RAL-59 91 chr2L 8502662 8502690 chr2L 8502744 8502759 13 82 4.0 2.5 3.2 3.1 97 chr2L 8502662 intron Dh31 - chr2L 8502710 intron Dh31 - chr2L 8502759 intron Dh31 - chr2L_13_8500001 chr2L_8500001 RAL-59 92 chr2L 8535072 8535095 chr2L 8535177 8535200 7 105 0.5 2.5 1.5 2.8 128 chr2L 8535072 intron CG17834 + chr2L 8535136 intron CG17834 + chr2L 8535200 intron CG17834 + chr2L_7_8535001 chr2L_8535001 RAL-59 93 chr2L 8588552 8588570 chr2L 8588643 8588661 12 90 6.0 7.5 6.8 1.5 109 chr2L 8588552 intron Sema-1a + chr2L 8588606 intron Sema-1a + chr2L 8588661 intron Sema-1a + chr2L_12_8585001 chr2L_8585001 RAL-59 94 chr2L 8604966 8604998 chr2L 8605064 8605096 4 98 0.5 1.5 1.0 2.0 130 chr2L 8604966 intron Sema-1a + chr2L 8605031 intron Sema-1a + chr2L 8605096 intron Sema-1a + chr2L_4_8605001 chr2L_8605001 RAL-59 95 chr2L 8723124 8723144 chr2L 8731496 8731521 Tirant 7 8376 3.0 1.0 2.0 2.3 8397 chr2L 8723124 intron raw - chr2L 8727322 intron raw - chr2L 8731521 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-59 96 chr2L 8783978 8783997 chr2L 8784054 8784073 8 76 4.0 6.5 5.2 1.3 95 chr2L 8783978 intergenic not near genes chr2L 8784026 intergenic not near genes chr2L 8784073 intergenic not near genes chr2L_8_8780001 chr2L_8780001 RAL-59 97 chr2L 8799802 8799832 chr2L 8799918 8799945 9 115 0.5 2.0 1.2 4.1 143 chr2L 8799802 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799945 intergenic not near genes chr2L_9_8795001 chr2L_8795001 RAL-59 98 chr2L 8803179 8803210 chr2L 8803267 8803298 7 88 1.0 1.5 1.2 3.2 119 chr2L 8803179 intergenic not near genes chr2L 8803238 intergenic not near genes chr2L 8803298 intergenic not near genes chr2L_7_8800001 chr2L_8800001 RAL-59 99 chr2L 8976222 8976254 chr2L 8976314 8976346 5 92 1.5 1.5 1.5 2.0 124 chr2L 8976222 intergenic not near genes chr2L 8976284 intergenic not near genes chr2L 8976346 intergenic not near genes chr2L_5_8975001 chr2L_8975001 RAL-59 100 chr2L 9000278 9000308 chr2L 9007788 9007817 roo 11 7510 2.0 1.0 1.5 4.4 7539 chr2L 9000278 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_11_9000001 chr2L_9000001 RAL-59 101 chr2L 9072615 9072648 chr2L 9072869 9072902 10 252 1.0 2.0 1.5 4.0 287 chr2L 9072615 intergenic not near genes chr2L 9072758 intergenic not near genes chr2L 9072902 intergenic not near genes chr2L_10_9070001 chr2L_9070001 RAL-59 102 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133320 18.5 12.5 15.5 0.2 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-59 103 chr2L 9259216 9259245 chr2L 9259308 9259338 9 91 3.5 3.5 3.5 2.0 122 chr2L 9259216 intron Ggamma30A + chr2L 9259277 intron Ggamma30A + chr2L 9259338 intron Ggamma30A + chr2L_9_9255001 chr2L_9255001 RAL-59 104 chr2L 9278903 9278919 chr2L 9278993 9279009 5 90 1.5 0.5 1.0 2.5 106 chr2L 9278903 intron Ggamma30A + chr2L 9278956 intron Ggamma30A + chr2L 9279009 intron Ggamma30A + chr2L_5_9275001 chr2L_9275001 RAL-59 105 chr2L 9283413 9283434 chr2L 9283495 9283516 5 82 1.0 0.5 0.8 2.8 103 chr2L 9283413 intron Ggamma30A + chr2L 9283464 intron Ggamma30A + chr2L 9283516 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-59 106 chr2L 9297378 9297389 chr2L 9297455 9297466 4 77 1.0 5.0 3.0 1.0 88 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297422 3` UTR Ggamma30A + chr2L 9297466 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-59 107 chr2L 9385126 9385147 chr2L 9385216 9385237 4 90 0.0 1.5 0.8 2.2 111 chr2L 9385126 intron Shawl - chr2L 9385182 intron Shawl - chr2L 9385237 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-59 108 chr2L 9391589 9391611 chr2L 9391694 9391721 5 109 0.5 0.0 0.2 4.2 132 chr2L 9391589 intron Shawl - chr2L 9391655 intron Shawl - chr2L 9391721 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-59 109 chr2L 9393499 9393531 chr2L 9396466 9396498 jockey 6 2967 1.0 1.5 1.2 2.7 2999 chr2L 9393499 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-59 110 chr2L 9493251 9493276 chr2L 9493333 9493360 12 82 2.5 1.5 2.0 4.0 109 chr2L 9493251 intron Gdi - chr2L 9493306 intron Gdi - chr2L 9493360 intron Gdi - chr2L_12_9490001 chr2L_9490001 RAL-59 111 chr2L 9712715 9712734 chr2L 9712811 9712830 5 96 1.0 0.0 0.5 3.3 115 chr2L 9712715 3` UTR Nckx30C - chr2L 9712772 3` UTR Nckx30C - chr2L 9712830 3` UTR Nckx30C - chr2L_5_9710001 chr2L_9710001 RAL-59 112 chr2L 9973726 9973757 chr2L 9980845 9980876 HMS-Beagle 11 7115 6.5 7.0 6.8 1.4 7150 chr2L 9973726 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_11_9975001 chr2L_9975001 RAL-59 113 chr2L 9986353 9986383 chr2L 9986446 9986476 11 93 3.0 2.5 2.8 2.9 123 chr2L 9986353 intron bib + chr2L 9986414 intron bib + chr2L 9986476 intron bib + chr2L_11_9985001 chr2L_9985001 RAL-59 114 chr2L 10051724 10051753 chr2L 10051809 10051838 18 83 3.5 4.5 4.0 3.6 114 chr2L 10051724 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_18_10050001 chr2L_10050001 RAL-59 115 chr2L 10087477 10087487 chr2L 10087552 10087564 9 77 5.5 5.5 5.5 1.4 87 chr2L 10087477 intron CG44153 - chr2L 10087520 intron CG44153 - chr2L 10087564 intron CG44153 - chr2L_9_10085001 chr2L_10085001 RAL-59 116 chr2L 10100357 10100390 chr2L 10100440 10100460 8 75 4.0 4.5 4.2 1.5 103 chr2L 10100357 intron CG44153 - chr2L 10100408 intron CG44153 - chr2L 10100460 intron CG44153 - chr2L_8_10100001 chr2L_10100001 RAL-59 117 chr2L 10136244 10136255 chr2L 10136325 10136335 4 81 6.5 1.0 3.8 0.8 91 chr2L 10136244 intron CG44153 - chr2L 10136290 intron CG44153 - chr2L 10136335 intron CG44153 - chr2L_4_10135001 chr2L_10135001 RAL-59 118 chr2L 10153200 10153231 chr2L 10153279 10153310 9 79 2.5 3.0 2.8 2.4 110 chr2L 10153200 intron,exon CG44153 -,CG4839 + chr2L 10153255 intron,intron CG44153 -,CG4839 + chr2L 10153310 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-59 119 chr2L 10156321 10156352 chr2L 10163791 10163822 blood 8 7470 0.5 1.5 1.0 4.0 7501 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-59 120 chr2L 10580691 10580713 chr2L 10580766 10580789 9 76 3.0 3.0 3.0 2.2 98 chr2L 10580691 intron Trim9 + chr2L 10580740 intron Trim9 + chr2L 10580789 intron Trim9 + chr2L_9_10580001 chr2L_10580001 RAL-59 121 chr2L 10633357 10633385 chr2L 10633443 10633457 6 84 0.5 7.5 4.0 1.2 100 chr2L 10633357 intron CG7329 - chr2L 10633407 intron CG7329 - chr2L 10633457 intron CG7329 - chr2L_6_10630001 chr2L_10630001 RAL-59 122 chr2L 10634750 10634783 chr2L 10634830 10634859 4 79 1.5 0.5 1.0 2.0 109 chr2L 10634750 intron CG7329 - chr2L 10634804 intron CG7329 - chr2L 10634859 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-59 123 chr2L 10704918 10704923 chr2L 10705013 10705018 4 95 5.5 0.0 2.8 1.1 100 chr2L 10704918 intron,3` UTR Lip2 -,CG6415 + chr2L 10704968 intron Lip2 - chr2L 10705018 intron Lip2 - chr2L_4_10700001 chr2L_10700001 RAL-59 124 chr2L 10811533 10811567 chr2L 10811925 10811959 16 392 2.5 1.0 1.8 5.7 426 chr2L 10811533 intron Nos - chr2L 10811746 intron Nos - chr2L 10811959 intron Nos - chr2L_16_10810001 chr2L_10810001 RAL-59 125 chr2L 10862848 10862872 chr2L 10864461 10864486 Rt1c 10 1612 5.0 11.0 8.0 1.1 1638 chr2L 10862848 3` UTR CR43807 - chr2L 10863667 intron CR43807 - chr2L 10864486 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-59 126 chr2L 10911594 10911613 chr2L 10911675 10911694 5 81 0.5 4.5 2.5 1.4 100 chr2L 10911594 intergenic not near genes chr2L 10911644 intergenic not near genes chr2L 10911694 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-59 127 chr2L 10946948 10946973 chr2L 10956163 10956188 roo 13 9215 7.5 8.5 8.0 1.4 9240 chr2L 10946948 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_13_10950001 chr2L_10950001 RAL-59 128 chr2L 11060921 11060932 chr2L 11061002 11061013 5 81 1.0 3.0 2.0 1.7 92 chr2L 11060921 intron Samuel - chr2L 11060967 intron Samuel - chr2L 11061013 intron Samuel - chr2L_5_11060001 chr2L_11060001 RAL-59 129 chr2L 11339735 11339743 chr2L 11339812 11339820 4 77 1.5 1.5 1.5 1.6 85 chr2L 11339735 intergenic not near genes chr2L 11339778 intergenic not near genes chr2L 11339820 intergenic not near genes chr2L_4_11335001 chr2L_11335001 RAL-59 130 chr2L 11418657 11418688 chr2L 11418736 11418767 10 79 1.0 2.5 1.8 3.6 110 chr2L 11418657 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_10_11415001 chr2L_11415001 RAL-59 131 chr2L 11450123 11450157 chr2L 11450209 11450239 4 83 0.0 1.0 0.5 2.7 116 chr2L 11450123 intergenic not near genes chr2L 11450181 intergenic not near genes chr2L 11450239 intergenic not near genes chr2L_4_11450001 chr2L_11450001 RAL-59 132 chr2L 11491131 11491159 chr2L 11491211 11491237 6 78 2.0 1.0 1.5 2.4 106 chr2L 11491131 intergenic not near genes chr2L 11491184 intergenic not near genes chr2L 11491237 intergenic not near genes chr2L_6_11490001 chr2L_11490001 RAL-59 133 chr2L 11563634 11563659 chr2L 11568838 11568863 copia 6 5204 3.0 0.5 1.8 2.1 5229 chr2L 11563634 intergenic not near genes chr2L 11566248 intergenic not near genes chr2L 11568863 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-59 134 chr2L 11598213 11598239 chr2L 11598352 11598380 9 140 2.0 3.0 2.5 2.6 167 chr2L 11598213 intron kek2 + chr2L 11598296 intron kek2 + chr2L 11598380 intron kek2 + chr2L_9_11595001 chr2L_11595001 RAL-59 135 chr2L 11612662 11612693 chr2L 11612750 11612780 4 88 2.5 5.0 3.8 0.8 118 chr2L 11612662 intron kek2 + chr2L 11612721 intron kek2 + chr2L 11612780 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-59 136 chr2L 11614051 11614083 chr2L 11615546 11615577 hopper2 9 1490 4.5 3.5 4.0 1.8 1526 chr2L 11614051 intron kek2 + chr2L 11614814 intron kek2 + chr2L 11615577 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-59 137 chr2L 11688758 11688769 chr2L 11688835 11688846 6 77 1.0 1.0 1.0 3.0 88 chr2L 11688758 intergenic not near genes chr2L 11688802 intergenic not near genes chr2L 11688846 intergenic not near genes chr2L_6_11685001 chr2L_11685001 RAL-59 138 chr2L 11713507 11713539 chr2L 11720975 11721007 blood 10 7468 0.5 2.5 1.5 4.0 7500 chr2L 11713507 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-59 139 chr2L 11770600 11770617 chr2L 11770687 11770704 10 87 7.5 3.0 5.2 1.6 104 chr2L 11770600 intergenic not near genes chr2L 11770652 intergenic not near genes chr2L 11770704 intergenic not near genes chr2L_10_11770001 chr2L_11770001 RAL-59 140 chr2L 11820432 11820457 chr2L 11820513 11820538 6 81 1.0 2.0 1.5 2.4 106 chr2L 11820432 intron Pde1c - chr2L 11820485 intron Pde1c - chr2L 11820538 intron Pde1c - chr2L_6_11820001 chr2L_11820001 RAL-59 141 chr2L 11870945 11870962 chr2L 11871023 11871040 9 78 0.0 0.0 0.0 9.0 95 chr2L 11870945 intron Pde1c - chr2L 11870992 intron Pde1c - chr2L 11871040 intron Pde1c - chr2L_9_11870001 chr2L_11870001 RAL-59 142 chr2L 11892547 11892819 chr2L 11892636 11892910 13 89 3.0 2.0 2.5 3.7 363 chr2L 11892547 intron Pde1c - chr2L 11892728 intron Pde1c - chr2L 11892910 intron Pde1c - chr2L_13_11890001 chr2L_11890001 RAL-59 143 chr2L 11941720 11941753 chr2L 11941836 11941869 10 116 2.5 1.0 1.8 3.6 149 chr2L 11941720 intergenic not near genes chr2L 11941794 intergenic not near genes chr2L 11941869 intergenic not near genes chr2L_10_11940001 chr2L_11940001 RAL-59 144 chr2L 12131472 12131491 chr2L 12131568 12131587 7 96 1.5 1.0 1.2 3.2 115 chr2L 12131472 intron rho-6 - chr2L 12131530 intron rho-6 - chr2L 12131587 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-59 145 chr2L 12272168 12272180 chr2L 12272244 12272256 4 76 2.0 0.0 1.0 2.0 88 chr2L 12272168 intron aret + chr2L 12272212 intron aret + chr2L 12272256 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-59 146 chr2L 12305415 12305435 chr2L 12305503 12305523 6 88 3.5 4.0 3.8 1.2 108 chr2L 12305415 intron aret + chr2L 12305469 intron aret + chr2L 12305523 intron aret + chr2L_6_12305001 chr2L_12305001 RAL-59 147 chr2L 12529419 12529445 chr2L 12529495 12529521 5 76 0.5 1.0 0.8 2.8 102 chr2L 12529419 intron bun - chr2L 12529470 intron bun - chr2L 12529521 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-59 148 chr2L 12570355 12570364 chr2L 12570436 12570445 4 81 1.0 0.0 0.5 2.7 90 chr2L 12570355 intergenic CR44598 - chr2L 12570400 intergenic CR44598 - chr2L 12570445 intergenic CR44598 - chr2L_4_12570001 chr2L_12570001 RAL-59 149 chr2L 12728922 12728944 chr2L 12729164 12729186 pogo 6 242 2.0 5.0 3.5 1.3 264 chr2L 12728922 intron MRP + chr2L 12729054 intron MRP + chr2L 12729186 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-59 150 chr2L 12731059 12731074 chr2L 12735826 12735841 F-element 6 4767 1.5 2.0 1.8 2.1 4782 chr2L 12731059 intron MRP + chr2L 12733450 intron MRP + chr2L 12735841 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-59 151 chr2L 12739177 12739205 chr2L 12743958 12743986 Doc 10 4781 1.5 7.5 4.5 1.8 4809 chr2L 12739177 exon MRP + chr2L 12741582 intron MRP + chr2L 12743986 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-59 152 chr2L 12751311 12751336 chr2L 12751393 12751419 9 83 1.0 4.0 2.5 2.6 108 chr2L 12751311 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751419 intergenic not near genes chr2L_9_12750001 chr2L_12750001 RAL-59 153 chr2L 12781802 12781811 chr2L 12789245 12789254 Quasimodo 6 7443 5.0 2.0 3.5 1.3 7452 chr2L 12781802 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789254 intergenic not near genes chr2L_6_12785001 chr2L_12785001 RAL-59 154 chr2L 12848447 12848466 chr2L 12848535 12848554 9 88 0.0 6.5 3.2 2.1 107 chr2L 12848447 intergenic not near genes chr2L 12848500 intergenic not near genes chr2L 12848554 intergenic not near genes chr2L_9_12845001 chr2L_12845001 RAL-59 155 chr2L 12861693 12861731 chr2L 12863160 12863180 hobo 18 1464 3.0 5.0 4.0 3.6 1487 chr2L 12861693 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_18_12860001 chr2L_12860001 RAL-59 156 chr2L 12894021 12894052 chr2L 12895487 12895499 hobo 6 1458 5.5 2.5 4.0 1.2 1478 chr2L 12894021 intergenic not near genes chr2L 12894760 intergenic not near genes chr2L 12895499 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-59 157 chr2L 12933848 12933883 chr2L 12941315 12941350 blood 13 7467 4.5 4.5 4.5 2.4 7502 chr2L 12933848 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_13_12935001 chr2L_12935001 RAL-59 158 chr2L 12963795 12963821 chr2L 12963897 12963923 12 102 2.5 3.0 2.8 3.2 128 chr2L 12963795 intergenic not near genes chr2L 12963859 intergenic not near genes chr2L 12963923 intergenic not near genes chr2L_12_12960001 chr2L_12960001 RAL-59 159 chr2L 13266379 13266401 chr2L 13266467 13266489 8 88 5.0 2.5 3.8 1.7 110 chr2L 13266379 intron CG44085 + chr2L 13266434 intron CG44085 + chr2L 13266489 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-59 160 chr2L 13328547 13328580 chr2L 13328912 13328945 6 365 3.0 0.5 1.8 2.1 398 chr2L 13328547 intron CG43778 - chr2L 13328746 intron CG43778 - chr2L 13328945 intron CG43778 - chr2L_6_13325001 chr2L_13325001 RAL-59 161 chr2L 13405650 13405680 chr2L 13410447 13410477 Doc 10 4797 4.5 3.5 4.0 2.0 4827 chr2L 13405650 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-59 162 chr2L 13462004 13462032 chr2L 13462138 13462166 9 134 6.5 1.0 3.8 1.9 162 chr2L 13462004 intron CG42784 + chr2L 13462085 intron CG42784 + chr2L 13462166 intron CG42784 + chr2L_9_13460001 chr2L_13460001 RAL-59 163 chr2L 13622145 13622171 chr2L 13622238 13622269 9 92 2.0 1.5 1.8 3.2 124 chr2L 13622145 intron kuz + chr2L 13622207 intron kuz + chr2L 13622269 intron kuz + chr2L_9_13620001 chr2L_13620001 RAL-59 164 chr2L 13761807 13761833 chr2L 13762918 13762944 Doc 8 1111 2.0 2.5 2.2 2.5 1137 chr2L 13761807 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-59 165 chr2L 13853104 13853108 chr2L 13862254 13862258 roo 4 9150 1.5 1.0 1.2 1.8 9154 chr2L 13853104 intron CenG1A + chr2L 13857681 intron CenG1A + chr2L 13862258 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-59 166 chr2L 13882583 13882617 chr2L 13882676 13882710 16 92 3.5 3.5 3.5 3.6 127 chr2L 13882583 intron CenG1A + chr2L 13882646 intron CenG1A + chr2L 13882710 intron CenG1A + chr2L_16_13880001 chr2L_13880001 RAL-59 167 chr2L 14029223 14029254 chr2L 14029304 14029335 7 81 1.0 1.0 1.0 3.5 112 chr2L 14029223 exon CG4500 + chr2L 14029279 3` UTR,3` UTR CG4500 +,CG18095 - chr2L 14029335 3` UTR,3` UTR CG4500 +,CG18095 - chr2L_7_14025001 chr2L_14025001 RAL-59 168 chr2L 14298933 14298946 chr2L 14299021 14299034 4 88 3.5 2.5 3.0 1.0 101 chr2L 14298933 intron wb + chr2L 14298984 intron wb + chr2L 14299034 intron wb + chr2L_4_14295001 chr2L_14295001 RAL-59 169 chr2L 14396041 14396059 chr2L 14399150 14399168 5 3109 6.5 5.0 5.8 0.7 3127 chr2L 14396041 intron elB - chr2L 14397604 intron elB - chr2L 14399168 intron elB - chr2L_5_14395001 chr2L_14395001 RAL-59 170 chr2L 14549153 14549176 chr2L 14549228 14549251 4 76 1.0 1.5 1.2 1.8 98 chr2L 14549153 intergenic CG4218 - chr2L 14549202 intergenic CG4218 - chr2L 14549251 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-59 171 chr2L 14552594 14552623 chr2L 14552673 14552709 11 81 7.0 1.0 4.0 2.2 115 chr2L 14552594 intergenic not near genes chr2L 14552652 intergenic not near genes chr2L 14552709 intergenic not near genes chr2L_11_14550001 chr2L_14550001 RAL-59 172 chr2L 14588381 14588415 chr2L 14588535 14588569 9 154 0.5 1.0 0.8 5.0 188 chr2L 14588381 intergenic CG42680 - chr2L 14588475 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_9_14585001 chr2L_14585001 RAL-59 173 chr2L 14601980 14602002 chr2L 14602063 14602086 6 84 2.5 2.5 2.5 1.7 106 chr2L 14601980 exon osp - chr2L 14602033 intron osp - chr2L 14602086 intron osp - chr2L_6_14600001 chr2L_14600001 RAL-59 174 chr2L 14669205 14669222 chr2L 14669560 14669577 6 355 4.5 2.0 3.2 1.4 372 chr2L 14669205 intron osp - chr2L 14669391 intron osp - chr2L 14669577 intron osp - chr2L_6_14665001 chr2L_14665001 RAL-59 175 chr2L 14707216 14707240 chr2L 14707335 14707359 6 119 1.5 0.5 1.0 3.0 143 chr2L 14707216 intergenic not near genes chr2L 14707288 intergenic not near genes chr2L 14707359 intergenic not near genes chr2L_6_14705001 chr2L_14705001 RAL-59 176 chr2L 14715537 14715565 chr2L 14715628 14715656 9 91 2.5 1.5 2.0 3.0 119 chr2L 14715537 intergenic not near genes chr2L 14715596 intergenic not near genes chr2L 14715656 intergenic not near genes chr2L_9_14715001 chr2L_14715001 RAL-59 177 chr2L 14803877 14803897 chr2L 14809080 14809100 copia 5 5201 2.5 1.0 1.8 1.8 5223 chr2L 14803877 intergenic not near genes chr2L 14806488 intergenic not near genes chr2L 14809100 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-59 178 chr2L 14889953 14889985 chr2L 14890378 14890410 jockey 10 425 2.5 2.5 2.5 2.9 457 chr2L 14889953 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890410 intergenic not near genes chr2L_10_14890001 chr2L_14890001 RAL-59 179 chr2L 14950448 14950482 chr2L 14950923 14950957 9 474 2.0 4.0 3.0 2.2 509 chr2L 14950448 intron CG42313 - chr2L 14950702 intron CG42313 - chr2L 14950957 intron CG42313 - chr2L_9_14950001 chr2L_14950001 RAL-59 180 chr2L 15003546 15003570 chr2L 15003630 15003654 9 84 0.0 1.5 0.8 5.0 108 chr2L 15003546 intergenic not near genes chr2L 15003600 intergenic not near genes chr2L 15003654 intergenic not near genes chr2L_9_15000001 chr2L_15000001 RAL-59 181 chr2L 15057845 15057867 chr2L 15061363 15061384 6 3517 13.0 9.0 11.0 0.5 3539 chr2L 15057845 5` UTR ck - chr2L 15059614 exon TfIIS - chr2L 15061384 intergenic vas + chr2L_6_15055001 chr2L_15055001 RAL-59 182 chr2L 15077399 15077426 chr2L 15077489 15077516 14 90 2.5 2.5 2.5 4.0 117 chr2L 15077399 intron CG15270 + chr2L 15077458 intron CG15270 + chr2L 15077516 intron CG15270 + chr2L_14_15075001 chr2L_15075001 RAL-59 183 chr2L 15155820 15155847 chr2L 15155918 15155948 5 100 4.0 3.5 3.8 1.0 128 chr2L 15155820 intergenic not near genes chr2L 15155884 intergenic not near genes chr2L 15155948 intergenic not near genes chr2L_5_15155001 chr2L_15155001 RAL-59 184 chr2L 15226367 15226393 chr2L 15226443 15226469 9 74 2.0 1.5 1.8 3.2 102 chr2L 15226367 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226469 intergenic not near genes chr2L_9_15225001 chr2L_15225001 RAL-59 185 chr2L 15497387 15497418 chr2L 15497496 15497527 15 107 3.0 5.0 4.0 3.0 140 chr2L 15497387 intergenic not near genes chr2L 15497457 intergenic not near genes chr2L 15497527 intergenic not near genes chr2L_15_15495001 chr2L_15495001 RAL-59 186 chr2L 15814960 15814991 chr2L 15815045 15815078 4 87 0.0 3.0 1.5 1.6 118 chr2L 15814960 intergenic not near genes chr2L 15815019 intergenic not near genes chr2L 15815078 intergenic not near genes chr2L_4_15815001 chr2L_15815001 RAL-59 187 chr2L 15933574 15933603 chr2L 15936112 15936138 5 2537 16.5 2.0 9.2 0.5 2564 chr2L 15933574 intron beat-Ib - chr2L 15934856 intron beat-Ib - chr2L 15936138 intron beat-Ib - chr2L_5_15930001 chr2L_15930001 RAL-59 188 chr2L 15956025 15956048 chr2L 15957492 15957515 hobo 4 1467 4.0 1.5 2.8 1.1 1490 chr2L 15956025 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957515 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-59 189 chr2L 16016447 16016480 chr2L 16016546 16016579 13 98 3.5 3.0 3.2 3.1 132 chr2L 16016447 intron beat-Ic + chr2L 16016513 intron beat-Ic + chr2L 16016579 intron beat-Ic + chr2L_13_16015001 chr2L_16015001 RAL-59 190 chr2L 16069278 16069293 chr2L 16069344 16069374 7 77 3.0 2.0 2.5 2.0 96 chr2L 16069278 intron beat-Ia + chr2L 16069326 intron beat-Ia + chr2L 16069374 intron beat-Ia + chr2L_7_16065001 chr2L_16065001 RAL-59 191 chr2L 16071771 16071772 chr2L 16217660 16217660 copia 6 145889 15.5 12.5 14.0 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-59 192 chr2L 16162455 16162474 chr2L 16162530 16162550 6 76 3.0 1.5 2.2 1.9 95 chr2L 16162455 intergenic not near genes chr2L 16162502 intergenic not near genes chr2L 16162550 intergenic not near genes chr2L_6_16160001 chr2L_16160001 RAL-59 193 chr2L 16195905 16195927 chr2L 16195982 16195986 11 75 3.5 4.5 4.0 2.2 81 chr2L 16195905 3` UTR CR44735 - chr2L 16195946 3` UTR CR44735 - chr2L 16195986 3` UTR CR44735 - chr2L_11_16195001 chr2L_16195001 RAL-59 194 chr2L 9084339 9084340 chr2L 16217660 16217660 6 7133321 18.5 12.5 15.5 0.4 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-59 195 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 16.0 12.5 14.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-59 196 chr2L 16263987 16264016 chr2L 16264078 16264107 10 91 2.5 1.5 2.0 3.3 120 chr2L 16263987 3` UTR crp - chr2L 16264047 3` UTR crp - chr2L 16264107 3` UTR crp - chr2L_10_16260001 chr2L_16260001 RAL-59 197 chr2L 16280251 16280287 chr2L 16281422 16281458 1360 19 1170 5.5 7.0 6.2 2.6 1207 chr2L 16280251 intron crp - chr2L 16280854 intron crp - chr2L 16281458 intron crp - chr2L_19_16280001 chr2L_16280001 RAL-59 198 chr2L 16375391 16375418 chr2L 16375482 16375508 4 90 2.0 0.0 1.0 2.0 117 chr2L 16375391 intergenic not near genes chr2L 16375450 intergenic not near genes chr2L 16375508 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-59 199 chr2L 16448966 16448972 chr2L 16449050 16449055 4 84 7.0 4.0 5.5 0.6 89 chr2L 16448966 5` UTR Idgf2 + chr2L 16449010 5` UTR Idgf2 + chr2L 16449055 5` UTR Idgf2 + chr2L_4_16445001 chr2L_16445001 RAL-59 200 chr2L 16448978 16448992 chr2L 16449044 16449075 8 78 3.5 1.0 2.2 2.5 97 chr2L 16448978 5` UTR Idgf2 + chr2L 16449026 5` UTR Idgf2 + chr2L 16449075 5` UTR Idgf2 + chr2L_8_16445001 chr2L_16445001 RAL-59 201 chr2L 16654703 16654725 chr2L 16654796 16654818 4 93 1.5 2.0 1.8 1.4 115 chr2L 16654703 intron CG42389 + chr2L 16654760 intron CG42389 + chr2L 16654818 intron CG42389 + chr2L_4_16650001 chr2L_16650001 RAL-59 202 chr2L 16701454 16701482 chr2L 16701533 16701561 10 79 2.5 0.0 1.2 4.5 107 chr2L 16701454 intergenic not near genes chr2L 16701508 intergenic not near genes chr2L 16701561 intergenic not near genes chr2L_10_16700001 chr2L_16700001 RAL-59 203 chr2L 16940001 16940012 chr2L 16940079 16940089 4 77 0.5 6.5 3.5 0.9 88 chr2L 16940001 intergenic not near genes chr2L 16940045 intergenic not near genes chr2L 16940089 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-59 204 chr2L 17000133 17000149 chr2L 17000255 17000271 7 121 1.0 5.5 3.2 1.7 138 chr2L 17000133 intergenic not near genes chr2L 17000202 intergenic not near genes chr2L 17000271 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-59 205 chr2L 17087385 17087399 chr2L 17087496 17087517 6 114 2.5 0.0 1.2 2.7 132 chr2L 17087385 intergenic CG12620 + chr2L 17087451 intergenic CG12620 + chr2L 17087517 intergenic CG12620 + chr2L_6_17085001 chr2L_17085001 RAL-59 206 chr2L 17088844 17088873 chr2L 17088928 17088957 10 84 1.5 5.5 3.5 2.2 113 chr2L 17088844 3` UTR CG12620 + chr2L 17088900 3` UTR CG12620 + chr2L 17088957 3` UTR CG12620 + chr2L_10_17085001 chr2L_17085001 RAL-59 207 chr2L 17273205 17273224 chr2L 17277988 17278006 F-element 7 4783 2.0 3.5 2.8 1.8 4801 chr2L 17273205 intergenic not near genes chr2L 17275606 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-59 208 chr2L 17327914 17327924 chr2L 17328000 17328009 6 86 2.5 1.0 1.8 2.1 95 chr2L 17327914 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328009 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-59 209 chr2L 17503222 17503247 chr2L 17503298 17503324 6 76 3.5 1.5 2.5 1.7 102 chr2L 17503222 intron Dhc36C + chr2L 17503273 intron Dhc36C + chr2L 17503324 intron Dhc36C + chr2L_6_17500001 chr2L_17500001 RAL-59 210 chr2L 17637104 17637130 chr2L 17637181 17637207 4 77 1.0 0.5 0.8 2.2 103 chr2L 17637104 intergenic not near genes chr2L 17637156 intergenic not near genes chr2L 17637207 intergenic not near genes chr2L_4_17635001 chr2L_17635001 RAL-59 211 chr2L 17855455 17855487 chr2L 17855544 17855576 12 89 2.0 0.0 1.0 6.0 121 chr2L 17855455 intron CadN2 - chr2L 17855516 intron CadN2 - chr2L 17855576 intron CadN2 - chr2L_12_17855001 chr2L_17855001 RAL-59 212 chr2L 17911962 17911973 chr2L 17914135 17914146 pogo 4 2173 7.0 1.0 4.0 0.8 2184 chr2L 17911962 intergenic not near genes chr2L 17913054 intergenic not near genes chr2L 17914146 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-59 213 chr2L 17940714 17940748 chr2L 17940799 17940833 10 85 1.0 1.5 1.2 4.5 119 chr2L 17940714 intergenic not near genes chr2L 17940774 intergenic not near genes chr2L 17940833 intergenic not near genes chr2L_10_17940001 chr2L_17940001 RAL-59 214 chr2L 17951945 17951966 chr2L 17953412 17953433 hobo 4 1467 0.5 1.0 0.8 2.2 1488 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952689 intergenic not near genes chr2L 17953433 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-59 215 chr2L 18051876 18051909 chr2L 18061023 18061055 roo 10 9147 0.5 2.0 1.2 4.5 9179 chr2L 18051876 intron rdo + chr2L 18056466 intron rdo + chr2L 18061055 intron rdo + chr2L_10_18055001 chr2L_18055001 RAL-59 216 chr2L 18111245 18111260 chr2L 18111336 18111351 4 91 4.5 1.5 3.0 1.0 106 chr2L 18111245 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111351 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-59 217 chr2L 18235062 18235072 chr2L 18235194 18235204 5 131 14.0 6.0 10.0 0.5 142 chr2L 18235062 intron CG42750 - chr2L 18235133 intron CG42750 - chr2L 18235204 intron CG42750 - chr2L_5_18235001 chr2L_18235001 RAL-59 218 chr2L 18235075 18235096 chr2L 18235190 18235228 13 124 6.0 4.5 5.2 2.1 153 chr2L 18235075 intron CG42750 - chr2L 18235152 intron CG42750 - chr2L 18235228 intron CG42750 - chr2L_13_18235001 chr2L_18235001 RAL-59 219 chr2L 18255486 18255512 chr2L 18255570 18255597 15 85 3.0 6.5 4.8 2.6 111 chr2L 18255486 intron CG42750 - chr2L 18255542 intron CG42750 - chr2L 18255597 intron CG42750 - chr2L_15_18255001 chr2L_18255001 RAL-59 220 chr2L 18274050 18274075 chr2L 18274136 18274161 7 86 1.0 2.5 1.8 2.5 111 chr2L 18274050 intron CG42750 - chr2L 18274106 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-59 221 chr2L 18344918 18344941 chr2L 18345032 18345055 6 114 2.0 2.0 2.0 2.0 137 chr2L 18344918 intron Fas3 + chr2L 18344986 intron Fas3 + chr2L 18345055 intron Fas3 + chr2L_6_18340001 chr2L_18340001 RAL-59 222 chr2L 18546238 18546256 chr2L 18546317 18546342 9 84 3.5 4.0 3.8 1.9 104 chr2L 18546238 intron Pde11 - chr2L 18546290 intron Pde11 - chr2L 18546342 intron Pde11 - chr2L_9_18545001 chr2L_18545001 RAL-59 223 chr2L 18589523 18589540 chr2L 18594047 18594076 11 4530 19.0 22.0 20.5 0.5 4553 chr2L 18589523 intron Pde11 - chr2L 18591800 exon CG15160 + chr2L 18594076 exon CG15160 + chr2L_11_18590001 chr2L_18590001 RAL-59 224 chr2L 18812567 18812589 chr2L 18812830 18812852 8 263 0.0 4.5 2.2 2.5 285 chr2L 18812567 intergenic CG17325 +,CG42305 + chr2L 18812710 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-59 225 chr2L 18856292 18856302 chr2L 18856776 18856787 10 484 4.0 9.5 6.8 1.3 495 chr2L 18856292 exon CG10602 - chr2L 18856540 exon CG10602 - chr2L 18856787 exon CG10602 - chr2L_10_18855001 chr2L_18855001 RAL-59 226 chr2L 18883855 18883886 chr2L 18883934 18883968 8 82 1.0 0.5 0.8 4.4 113 chr2L 18883855 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883968 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-59 227 chr2L 18898402 18898428 chr2L 18898479 18898510 9 81 1.5 1.0 1.2 4.1 108 chr2L 18898402 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898510 intergenic not near genes chr2L_9_18895001 chr2L_18895001 RAL-59 228 chr2L 19182004 19182016 chr2L 19182077 19182096 5 76 2.0 4.5 3.2 1.2 92 chr2L 19182004 3` UTR CG42688 - chr2L 19182050 3` UTR CG42688 - chr2L 19182096 3` UTR CG42688 - chr2L_5_19180001 chr2L_19180001 RAL-59 229 chr2L 19189968 19190004 chr2L 19190122 19190156 6 154 1.0 2.0 1.5 2.4 188 chr2L 19189968 intergenic pigeon +,drl + chr2L 19190062 intergenic pigeon +,drl + chr2L 19190156 intergenic drl +,pigeon + chr2L_6_19190001 chr2L_19190001 RAL-59 230 chr2L 19199667 19199705 chr2L 19199744 19199782 10 74 2.5 2.5 2.5 2.9 115 chr2L 19199667 intron drl + chr2L 19199724 intron drl + chr2L 19199782 intron drl + chr2L_10_19195001 chr2L_19195001 RAL-59 231 chr2L 19331666 19331697 chr2L 19331744 19331776 8 75 2.5 2.5 2.5 2.3 110 chr2L 19331666 intergenic not near genes chr2L 19331721 intergenic not near genes chr2L 19331776 intergenic not near genes chr2L_8_19330001 chr2L_19330001 RAL-59 232 chr2L 19345017 19345043 chr2L 19357226 19357252 blood 7 12209 2.5 3.5 3.0 1.8 12235 chr2L 19345017 intron dnt - chr2L 19351134 intron dnt - chr2L 19357252 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-59 233 chr2L 19357545 19357567 chr2L 19357635 19357657 5 90 2.0 2.0 2.0 1.7 112 chr2L 19357545 intron dnt - chr2L 19357601 intron dnt - chr2L 19357657 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-59 234 chr2L 19440089 19440102 chr2L 19440164 19440178 4 76 4.0 4.0 4.0 0.8 89 chr2L 19440089 intron CG10237 - chr2L 19440134 intron CG10237 - chr2L 19440178 intron CG10237 - chr2L_4_19440001 chr2L_19440001 RAL-59 235 chr2L 19469176 19469197 chr2L 19469261 19469282 7 85 1.0 2.0 1.5 2.8 106 chr2L 19469176 5` UTR CR45722 + chr2L 19469229 5` UTR CR45722 + chr2L 19469282 5` UTR CR45722 + chr2L_7_19465001 chr2L_19465001 RAL-59 236 chr2L 19544589 19544625 chr2L 19544664 19544696 18 73 7.5 7.5 7.5 2.1 107 chr2L 19544589 exon ref(2)P + chr2L 19544642 exon ref(2)P + chr2L 19544696 exon ref(2)P + chr2L_18_19540001 chr2L_19540001 RAL-59 237 chr2L 19560834 19560862 chr2L 19560914 19560942 4 80 2.5 1.0 1.8 1.4 108 chr2L 19560834 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-59 238 chr2L 19561343 19561366 chr2L 19561484 19561507 7 141 2.0 2.0 2.0 2.3 164 chr2L 19561343 exon Tep5 + chr2L 19561425 exon Tep5 + chr2L 19561507 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-59 239 chr2L 19574711 19574739 chr2L 19574791 19574819 6 80 1.5 0.0 0.8 3.3 108 chr2L 19574711 intron spi - chr2L 19574765 intron spi - chr2L 19574819 intron spi - chr2L_6_19570001 chr2L_19570001 RAL-59 240 chr2L 19620092 19620131 chr2L 19621078 19621120 jockey 16 988 4.0 5.5 4.8 2.8 1028 chr2L 19620092 intron Lar + chr2L 19620606 intron Lar + chr2L 19621120 intron Lar + chr2L_16_19620001 chr2L_19620001 RAL-59 241 chr2L 19652579 19652600 chr2L 19674015 19674036 opus 4 21436 3.5 1.5 2.5 1.1 21457 chr2L 19652579 intron Lar + chr2L 19663308 intron Lar + chr2L 19674036 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-59 242 chr2L 19703541 19703570 chr2L 19712677 19712706 roo 5 9136 2.0 2.0 2.0 1.7 9165 chr2L 19703541 intron Lar + chr2L 19708124 intron Lar + chr2L 19712706 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-59 243 chr2L 19737357 19737389 chr2L 19740825 19740853 1360 11 3468 3.5 8.5 6.0 1.6 3496 chr2L 19737357 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-59 244 chr2L 19754875 19754906 chr2L 19754956 19754990 14 82 2.0 4.0 3.0 3.5 115 chr2L 19754875 intron CG10631 - chr2L 19754932 intron CG10631 - chr2L 19754990 intron CG10631 - chr2L_14_19750001 chr2L_19750001 RAL-59 245 chr2L 19762815 19762834 chr2L 19763057 19763076 pogo 4 242 5.0 0.5 2.8 1.1 261 chr2L 19762815 intron fbp - chr2L 19762946 intron fbp - chr2L 19763076 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-59 246 chr2L 19837278 19837308 chr2L 19837356 19837387 8 80 5.5 2.5 4.0 1.6 109 chr2L 19837278 intron sick + chr2L 19837332 intron sick + chr2L 19837387 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-59 247 chr2L 19901493 19901517 chr2L 19901595 19901620 4 102 1.5 1.5 1.5 1.6 127 chr2L 19901493 intron sick + chr2L 19901556 intron sick + chr2L 19901620 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-59 248 chr2L 19963489 19963506 chr2L 19963569 19963574 5 77 4.0 6.5 5.2 0.8 85 chr2L 19963489 exon CG16772 + chr2L 19963532 exon CG16772 + chr2L 19963574 exon CG16772 + chr2L_5_19960001 chr2L_19960001 RAL-59 249 chr2L 19988526 19988553 chr2L 19988673 19988697 9 146 2.5 7.5 5.0 1.5 171 chr2L 19988526 intron CG43861 - chr2L 19988612 intron CG43861 - chr2L 19988697 intron CG43861 - chr2L_9_19985001 chr2L_19985001 RAL-59 250 chr2L 20272112 20272144 chr2L 20282823 20282855 copia 9 10711 1.0 2.0 1.5 3.6 10743 chr2L 20272112 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_9_20275001 chr2L_20275001 RAL-59 251 chr2L 20296506 20296541 chr2L 20296587 20296622 5 81 0.0 2.5 1.2 2.3 116 chr2L 20296506 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-59 252 chr2L 20322640 20322667 chr2L 20322723 20322749 6 80 2.0 4.0 3.0 1.5 109 chr2L 20322640 intron spir + chr2L 20322694 intron spir + chr2L 20322749 intron spir + chr2L_6_20320001 chr2L_20320001 RAL-59 253 chr2L 20382350 20382362 chr2L 20382585 20382593 6 234 3.0 6.5 4.8 1.0 243 chr2L 20382350 5` UTR CG16798 - chr2L 20382472 intergenic CG16798 - chr2L 20382593 intergenic CG16798 - chr2L_6_20380001 chr2L_20380001 RAL-59 254 chr2L 20382364 20382378 chr2L 20382578 20382611 6 230 2.0 4.5 3.2 1.4 247 chr2L 20382364 intergenic CG16798 - chr2L 20382488 intergenic CG16798 - chr2L 20382611 intergenic CG16798 - chr2L_6_20380001 chr2L_20380001 RAL-59 255 chr2L 20498689 20498704 chr2L 20498788 20498803 5 99 5.0 3.5 4.2 1.0 114 chr2L 20498689 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498803 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-59 256 chr2L 20568666 20568681 chr2L 20569056 20569071 X-element 6 390 1.0 2.5 1.8 2.1 405 chr2L 20568666 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-59 257 chr2L 20576217 20576241 chr2L 20583685 20583708 blood 6 7468 6.0 5.0 5.5 0.9 7491 chr2L 20576217 intergenic CR45347 + chr2L 20579962 intergenic not near genes chr2L 20583708 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-59 258 chr2L 20818513 20818527 chr2L 20818594 20818608 6 81 5.0 4.0 4.5 1.1 95 chr2L 20818513 exon CheB38a - chr2L 20818560 intergenic CheB38a - chr2L 20818608 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-59 259 chr2L 20901470 20901487 chr2L 20902634 20902651 1360 4 1164 0.0 0.5 0.2 3.3 1181 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-59 260 chr2L 20927275 20927292 chr2L 20927542 20927558 4 267 14.5 27.5 21.0 0.2 283 chr2L 20927275 exon CG9272 - chr2L 20927416 exon CG9272 - chr2L 20927558 exon CG9272 - chr2L_4_20925001 chr2L_20925001 RAL-59 261 chr2L 20984741 20984769 chr2L 20984833 20984861 9 91 3.5 2.5 3.0 2.2 120 chr2L 20984741 intron CG42238 - chr2L 20984801 intron CG42238 - chr2L 20984861 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-59 262 chr2L 20986905 20986932 chr2L 20987242 20987269 12 337 4.0 3.5 3.8 2.5 364 chr2L 20986905 intron CG42238 - chr2L 20987087 intron CG42238 - chr2L 20987269 intron CG42238 - chr2L_12_20985001 chr2L_20985001 RAL-59 263 chr2L 20991035 20991069 chr2L 20991113 20991146 7 78 1.0 0.5 0.8 3.9 111 chr2L 20991035 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991146 intron CG42238 - chr2L_7_20990001 chr2L_20990001 RAL-59 264 chr2L 21012085 21012096 chr2L 21012178 21012189 4 93 4.5 2.5 3.5 0.9 104 chr2L 21012085 intron CG42238 - chr2L 21012137 intron CG42238 - chr2L 21012189 intron CG42238 - chr2L_4_21010001 chr2L_21010001 RAL-59 265 chr2L 21020272 21020299 chr2L 21023948 21023976 NOF 8 3677 3.5 2.0 2.8 2.1 3704 chr2L 21020272 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023976 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-59 266 chr2L 21041148 21041165 chr2L 21049409 21049426 Tirant 8 8261 2.0 4.0 3.0 2.0 8278 chr2L 21041148 intron CG42238 - chr2L 21045287 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-59 267 chr2L 21085051 21085083 chr2L 21085376 21085408 15 325 3.5 5.0 4.2 2.9 357 chr2L 21085051 exon CG33509 - chr2L 21085230 exon CG33509 - chr2L 21085408 exon CG33509 - chr2L_15_21085001 chr2L_21085001 RAL-59 268 chr2L 21806224 21806250 chr2L 21806327 21806353 4 102 0.0 2.0 1.0 2.0 129 chr2L 21806224 intergenic not near genes chr2L 21806288 intergenic not near genes chr2L 21806353 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-59 269 chr2L 21819333 21819360 chr2L 21819421 21819448 12 88 1.0 4.5 2.8 3.2 115 chr2L 21819333 intergenic CR44786 + chr2L 21819390 intergenic CR44786 + chr2L 21819448 intergenic CR44786 + chr2L_12_21815001 chr2L_21815001 RAL-59 270 chr2L 21859316 21859353 chr2L 21859396 21859433 19 79 3.0 4.5 3.8 4.0 117 chr2L 21859316 intron CR44917 + chr2L 21859374 intron CR44917 + chr2L 21859433 intron CR44917 + chr2L_19_21855001 chr2L_21855001 RAL-59 271 chr2L 21859717 21859747 chr2L 21859816 21859846 14 98 5.0 3.5 4.2 2.7 129 chr2L 21859717 intron CR44917 + chr2L 21859782 intron CR44917 + chr2L 21859846 intron CR44917 + chr2L_14_21855001 chr2L_21855001 RAL-59 272 chr2L 21981682 21981716 chr2L 21990847 21990881 roo 14 9164 0.0 4.5 2.2 4.4 9199 chr2L 21981682 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_14_21985001 chr2L_21985001 RAL-59 273 chr2R 529323 529352 chr2R 537948 537977 Max-element 5 8625 0.5 1.5 1.0 2.5 8654 chr2R 529323 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537977 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-59 274 chr2R 552769 552783 chr2R 553969 554000 1360 6 1214 2.0 3.5 2.8 1.6 1231 chr2R 552769 intron CG40378 + chr2R 553384 intron CG40378 + chr2R 554000 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-59 275 chr2R 1082374 1082384 chr2R 1087150 1087157 Doc 6 4774 5.5 5.5 5.5 0.9 4783 chr2R 1082374 intron rl + chr2R 1084766 intron rl + chr2R 1087157 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-59 276 chr2R 1513960 1513976 chr2R 1514105 1514128 4 150 57.5 50.0 53.8 0.1 168 chr2R 1513960 3` UTR Maf1 - chr2R 1514044 3` UTR Maf1 - chr2R 1514128 3` UTR Maf1 - chr2R_4_1510001 chr2R_1510001 RAL-59 277 chr2R 3169734 3169752 chr2R 3169868 3169886 4 134 1.0 2.0 1.5 1.6 152 chr2R 3169734 intron CG42596 + chr2R 3169810 intron CG42596 + chr2R 3169886 intron CG42596 + chr2R_4_3165001 chr2R_3165001 RAL-59 278 chr2R 3293757 3293771 chr2R 3293835 3293849 4 77 2.0 6.0 4.0 0.8 92 chr2R 3293757 intergenic not near genes chr2R 3293803 intergenic not near genes chr2R 3293849 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-59 279 chr2R 4604550 4604574 chr2R 4604628 4604653 6 79 3.5 2.5 3.0 1.5 103 chr2R 4604550 intron p120ctn + chr2R 4604602 intron p120ctn + chr2R 4604653 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-59 280 chr2R 4622951 4622986 chr2R 4624110 4624140 1360 11 1158 2.0 4.0 3.0 2.8 1189 chr2R 4622951 intergenic CR44101 - chr2R 4623546 intergenic not near genes chr2R 4624140 intergenic not near genes chr2R_11_4620001 chr2R_4620001 RAL-59 281 chr2R 4624640 4624674 chr2R 4626544 4626579 Bica 10 1904 3.0 3.0 3.0 2.5 1939 chr2R 4624640 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626579 intergenic not near genes chr2R_10_4625001 chr2R_4625001 RAL-59 282 chr2R 4750346 4750377 chr2R 4751502 4751534 1360 5 1156 0.5 2.5 1.5 2.0 1188 chr2R 4750346 intron conu + chr2R 4750940 intron conu + chr2R 4751534 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-59 283 chr2R 5008993 5009026 chr2R 5009302 5009334 13 304 2.0 3.5 2.8 3.4 341 chr2R 5008993 intron Ir41a + chr2R 5009164 intron Ir41a + chr2R 5009334 intron Ir41a + chr2R_13_5005001 chr2R_5005001 RAL-59 284 chr2R 5040748 5040763 chr2R 5041238 5041248 5 489 0.0 2.0 1.0 2.5 500 chr2R 5040748 intergenic not near genes chr2R 5040998 intergenic not near genes chr2R 5041248 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-59 285 chr2R 5188709 5188733 chr2R 5189402 5189426 gypsy8 10 692 3.5 4.5 4.0 2.0 717 chr2R 5188709 intron Nipped-A - chr2R 5189068 intron Nipped-A - chr2R 5189426 intron Nipped-A - chr2R_10_5185001 chr2R_5185001 RAL-59 286 chr2R 5209785 5209812 chr2R 5210318 5210345 6 533 2.5 0.5 1.5 2.4 560 chr2R 5209785 intron Nipped-A - chr2R 5210065 intron Nipped-A - chr2R 5210345 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-59 287 chr2R 5267599 5267626 chr2R 5267686 5267712 7 86 1.0 2.0 1.5 2.8 113 chr2R 5267599 intron d4 + chr2R 5267656 intron d4 + chr2R 5267712 intron d4 + chr2R_7_5265001 chr2R_5265001 RAL-59 288 chr2R 5472377 5472387 chr2R 5472471 5472481 4 94 0.0 4.5 2.2 1.2 104 chr2R 5472377 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472481 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-59 289 chr2R 5476352 5476385 chr2R 5476896 5476929 9 544 2.5 4.0 3.2 2.1 577 chr2R 5476352 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476929 intron CG30440 - chr2R_9_5475001 chr2R_5475001 RAL-59 290 chr2R 5491661 5491695 chr2R 5491754 5491788 10 93 2.0 2.0 2.0 3.3 127 chr2R 5491661 intron CG30440 - chr2R 5491724 intron CG30440 - chr2R 5491788 intron CG30440 - chr2R_10_5490001 chr2R_5490001 RAL-59 291 chr2R 5710657 5710680 chr2R 5710734 5710757 6 77 1.0 1.0 1.0 3.0 100 chr2R 5710657 intron ap - chr2R 5710707 intron ap - chr2R 5710757 intron ap - chr2R_6_5710001 chr2R_5710001 RAL-59 292 chr2R 5861291 5861316 chr2R 5861407 5861437 9 120 4.5 3.5 4.0 1.8 146 chr2R 5861291 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861437 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-59 293 chr2R 5869278 5869302 chr2R 5874354 5874378 flea 4 5076 0.5 3.0 1.8 1.4 5100 chr2R 5869278 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874378 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-59 294 chr2R 5878934 5878951 chr2R 5879014 5879031 5 80 0.5 0.5 0.5 3.3 97 chr2R 5878934 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879031 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-59 295 chr2R 6096723 6096745 chr2R 6101910 6101941 BS 10 5189 7.5 5.0 6.2 1.4 5218 chr2R 6096723 intron EcR - chr2R 6099332 intron EcR - chr2R 6101941 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-59 296 chr2R 6135849 6135883 chr2R 6135980 6136014 12 131 0.5 3.0 1.8 4.3 165 chr2R 6135849 intron EcR - chr2R 6135932 intron EcR - chr2R 6136014 intron EcR - chr2R_12_6135001 chr2R_6135001 RAL-59 297 chr2R 6194685 6194697 chr2R 6194768 6194780 5 83 4.5 4.0 4.2 1.0 95 chr2R 6194685 intron Ptr - chr2R 6194732 intron Ptr - chr2R 6194780 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-59 298 chr2R 6494524 6494553 chr2R 6499286 6499315 F-element 7 4762 3.0 1.0 2.0 2.3 4791 chr2R 6494524 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499315 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-59 299 chr2R 6530772 6530795 chr2R 6530852 6530875 5 80 0.5 0.5 0.5 3.3 103 chr2R 6530772 intron jing + chr2R 6530824 intron jing + chr2R 6530875 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-59 300 chr2R 6561855 6561885 chr2R 6561941 6561970 10 85 3.0 3.5 3.2 2.4 115 chr2R 6561855 intron jing + chr2R 6561912 intron jing + chr2R 6561970 intron jing + chr2R_10_6560001 chr2R_6560001 RAL-59 301 chr2R 6806798 6806814 chr2R 6806874 6806899 5 81 0.0 0.5 0.2 4.2 101 chr2R 6806798 intergenic not near genes chr2R 6806848 intergenic not near genes chr2R 6806899 intergenic not near genes chr2R_5_6805001 chr2R_6805001 RAL-59 302 chr2R 7039148 7039170 chr2R 7039438 7039442 7 290 0.0 1.5 0.8 3.9 294 chr2R 7039148 intergenic CG33914 - chr2R 7039295 intergenic CG33914 - chr2R 7039442 intergenic CG33914 - chr2R_7_7035001 chr2R_7035001 RAL-59 303 chr2R 7139945 7139952 chr2R 7141412 7141444 hopper2 6 1488 3.0 3.5 3.2 1.4 1499 chr2R 7139945 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141444 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-59 304 chr2R 7153160 7153178 chr2R 7153246 7153264 5 86 8.5 2.0 5.2 0.8 104 chr2R 7153160 intron,intron pk +,Spn43Ab - chr2R 7153212 intron,intron pk +,Spn43Ab - chr2R 7153264 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-59 305 chr2R 7189854 7189870 chr2R 7190325 7190341 5 471 2.0 1.5 1.8 1.8 487 chr2R 7189854 intron pk + chr2R 7190098 intron pk + chr2R 7190341 intron pk + chr2R_5_7190001 chr2R_7190001 RAL-59 306 chr2R 7235820 7235846 chr2R 7240912 7240936 jockey 8 5090 3.5 2.5 3.0 2.0 5116 chr2R 7235820 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240936 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-59 307 chr2R 7608419 7608427 chr2R 7613622 7613630 I-element 4 5203 0.5 0.0 0.2 3.3 5211 chr2R 7608419 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613630 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-59 308 chr2R 7815670 7815700 chr2R 7822139 7822169 Burdock 8 6468 3.0 4.0 3.5 1.8 6499 chr2R 7815670 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822169 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-59 309 chr2R 7869191 7869216 chr2R 7873977 7874001 Doc 9 4785 5.5 4.5 5.0 1.5 4810 chr2R 7869191 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874001 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-59 310 chr2R 8015647 8015681 chr2R 8017669 8017704 10 2022 1.5 5.5 3.5 2.2 2057 chr2R 8015647 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017704 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-59 311 chr2R 8089269 8089279 chr2R 8089355 8089365 4 86 2.0 2.0 2.0 1.3 96 chr2R 8089269 3` UTR sut2 + chr2R 8089317 intergenic sut2 +,sut3 + chr2R 8089365 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-59 312 chr2R 8160937 8160952 chr2R 8161027 8161042 1360 5 90 3.0 7.5 5.2 0.8 105 chr2R 8160937 intron CG8708 - chr2R 8160990 intron CG8708 - chr2R 8161042 intron CG8708 - chr2R_5_8160001 chr2R_8160001 RAL-59 313 chr2R 8330863 8330891 chr2R 8331349 8331376 roo 7 486 2.5 1.5 2.0 2.3 513 chr2R 8330863 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-59 314 chr2R 8398214 8398238 chr2R 8402995 8403016 Doc 5 4780 10.0 5.5 7.8 0.6 4802 chr2R 8398214 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403016 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-59 315 chr2R 8468853 8468887 chr2R 8468968 8468996 10 114 5.0 3.5 4.2 1.9 143 chr2R 8468853 3` UTR Mal-A7 - chr2R 8468924 3` UTR Mal-A7 - chr2R 8468996 3` UTR Mal-A7 - chr2R_10_8465001 chr2R_8465001 RAL-59 316 chr2R 8483967 8483995 chr2R 8484042 8484071 4 74 0.0 1.5 0.8 2.2 104 chr2R 8483967 intron mtt - chr2R 8484019 intron mtt - chr2R 8484071 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-59 317 chr2R 8508764 8508767 chr2R 8508847 8508850 4 83 3.5 5.5 4.5 0.7 86 chr2R 8508764 intron mtt - chr2R 8508807 intron mtt - chr2R 8508850 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-59 318 chr2R 8536197 8536228 chr2R 8536429 8536460 14 232 4.5 2.0 3.2 3.3 263 chr2R 8536197 intergenic not near genes chr2R 8536328 intergenic not near genes chr2R 8536460 intergenic not near genes chr2R_14_8535001 chr2R_8535001 RAL-59 319 chr2R 8615779 8615809 chr2R 8615891 8615922 8 113 1.0 3.0 2.0 2.7 143 chr2R 8615779 intron Cirl + chr2R 8615850 intron Cirl + chr2R 8615922 5` UTR Cirl + chr2R_8_8615001 chr2R_8615001 RAL-59 320 chr2R 8658239 8658259 chr2R 8658315 8658335 4 76 3.0 3.5 3.2 1.0 96 chr2R 8658239 intron ptc + chr2R 8658287 intron ptc + chr2R 8658335 intron ptc + chr2R_4_8655001 chr2R_8655001 RAL-59 321 chr2R 8722764 8722781 chr2R 8723005 8723021 pogo 9 241 5.0 4.5 4.8 1.6 257 chr2R 8722764 intron CG14767 - chr2R 8722892 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-59 322 chr2R 8768200 8768216 chr2R 8768275 8768278 4 68 5.0 5.5 5.2 0.6 78 chr2R 8768200 intergenic CR44278 - chr2R 8768239 intergenic CR44278 - chr2R 8768278 intergenic CR44278 - chr2R_4_8765001 chr2R_8765001 RAL-59 323 chr2R 8768218 8768219 chr2R 8768271 8768297 4 71 3.5 4.5 4.0 0.8 79 chr2R 8768218 intergenic CR44278 - chr2R 8768258 intergenic CR44278 - chr2R 8768297 3` UTR CR44278 - chr2R_4_8765001 chr2R_8765001 RAL-59 324 chr2R 8833426 8833449 chr2R 8833508 8833531 6 82 3.5 6.0 4.8 1.0 105 chr2R 8833426 intron sns + chr2R 8833478 intron sns + chr2R 8833531 intron sns + chr2R_6_8830001 chr2R_8830001 RAL-59 325 chr2R 8907235 8907269 chr2R 8907484 8907518 7 249 1.5 2.0 1.8 2.5 283 chr2R 8907235 intergenic CG8258 -,CG30349 + chr2R 8907376 intergenic CG30349 +,CG8258 - chr2R 8907518 5` UTR CG30349 + chr2R_7_8905001 chr2R_8905001 RAL-59 326 chr2R 9052709 9052730 chr2R 9052789 9052811 8 81 0.0 5.0 2.5 2.3 102 chr2R 9052709 intron CG13743 - chr2R 9052760 intron CG13743 - chr2R 9052811 intron CG13743 - chr2R_8_9050001 chr2R_9050001 RAL-59 327 chr2R 9075903 9075935 chr2R 9076037 9076070 12 135 3.0 2.5 2.8 3.2 167 chr2R 9075903 exon ana + chr2R 9075986 intron ana + chr2R 9076070 intron ana + chr2R_12_9075001 chr2R_9075001 RAL-59 328 chr2R 9212702 9212715 chr2R 9213180 9213201 roo 8 485 5.0 5.5 5.2 1.3 499 chr2R 9212702 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213201 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-59 329 chr2R 9368133 9368151 chr2R 9368204 9368225 7 73 5.5 0.0 2.8 1.8 92 chr2R 9368133 intron CG13954 - chr2R 9368179 intron CG13954 - chr2R 9368225 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-59 330 chr2R 9510665 9510696 chr2R 9510781 9510812 8 116 0.0 1.5 0.8 4.4 147 chr2R 9510665 intron brp + chr2R 9510738 intron brp + chr2R 9510812 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-59 331 chr2R 9529849 9529884 chr2R 9529936 9529970 17 87 3.5 3.0 3.2 4.0 121 chr2R 9529849 intron brp + chr2R 9529910 intron brp + chr2R 9529970 intron brp + chr2R_17_9525001 chr2R_9525001 RAL-59 332 chr2R 9653258 9653288 chr2R 9653342 9653372 8 84 1.5 1.0 1.2 3.6 114 chr2R 9653258 intron Mmp2 - chr2R 9653315 intron Mmp2 - chr2R 9653372 intron Mmp2 - chr2R_8_9650001 chr2R_9650001 RAL-59 333 chr2R 9770059 9770093 chr2R 9770153 9770187 9 91 3.0 0.5 1.8 3.2 128 chr2R 9770059 intron CG1688 - chr2R 9770123 intron CG1688 - chr2R 9770187 intron CG1688 - chr2R_9_9770001 chr2R_9770001 RAL-59 334 chr2R 10005847 10005880 chr2R 10007012 10007045 1360 16 1165 6.5 4.0 5.2 2.6 1198 chr2R 10005847 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-59 335 chr2R 10132204 10132218 chr2R 10132283 10132298 5 80 1.0 5.0 3.0 1.2 94 chr2R 10132204 intron gem + chr2R 10132251 intron gem + chr2R 10132298 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-59 336 chr2R 10169539 10169561 chr2R 10169619 10169641 10 79 4.5 6.5 5.5 1.5 102 chr2R 10169539 intron KCNQ - chr2R 10169590 intron KCNQ - chr2R 10169641 intron KCNQ - chr2R_10_10165001 chr2R_10165001 RAL-59 337 chr2R 10266495 10266513 chr2R 10266586 10266603 4 90 5.5 2.0 3.8 0.8 108 chr2R 10266495 intron CG12910 + chr2R 10266549 intron CG12910 + chr2R 10266603 intron CG12910 + chr2R_4_10265001 chr2R_10265001 RAL-59 338 chr2R 10266515 10266525 chr2R 10266585 10266615 4 81 2.5 2.0 2.2 1.2 100 chr2R 10266515 intron CG12910 + chr2R 10266565 intron CG12910 + chr2R 10266615 intron CG12910 + chr2R_4_10265001 chr2R_10265001 RAL-59 339 chr2R 10318514 10318545 chr2R 10318600 10318631 8 86 2.0 0.5 1.2 3.6 117 chr2R 10318514 intron Ndg + chr2R 10318572 intron Ndg + chr2R 10318631 intron Ndg + chr2R_8_10315001 chr2R_10315001 RAL-59 340 chr2R 10469020 10469054 chr2R 10469146 10469179 15 126 2.0 3.0 2.5 4.3 159 chr2R 10469020 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469179 intron CG11777 + chr2R_15_10465001 chr2R_10465001 RAL-59 341 chr2R 10585578 10585584 chr2R 10594161 10594167 Tirant 4 8583 0.5 3.0 1.8 1.4 8589 chr2R 10585578 intron psq + chr2R 10589872 intron psq + chr2R 10594167 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-59 342 chr2R 10761556 10761586 chr2R 10761710 10761739 7 154 1.0 0.5 0.8 3.9 183 chr2R 10761556 intron,5` UTR CG33144 -,CR43605 + chr2R 10761648 intron,5` UTR CG33144 -,CR43605 + chr2R 10761739 intron CG33144 - chr2R_7_10760001 chr2R_10760001 RAL-59 343 chr2R 10780438 10780467 chr2R 10780561 10780590 9 123 3.5 1.5 2.5 2.6 152 chr2R 10780438 intron CG33144 - chr2R 10780514 intron CG33144 - chr2R 10780590 intron CG33144 - chr2R_9_10780001 chr2R_10780001 RAL-59 344 chr2R 10790153 10790176 chr2R 10790241 10790264 9 88 2.0 3.5 2.8 2.4 111 chr2R 10790153 intron CG33144 - chr2R 10790208 intron CG33144 - chr2R 10790264 intron CG33144 - chr2R_9_10790001 chr2R_10790001 RAL-59 345 chr2R 10966870 10966891 chr2R 10966950 10966971 10 79 5.5 5.5 5.5 1.5 101 chr2R 10966870 intergenic not near genes chr2R 10966920 intergenic not near genes chr2R 10966971 intergenic not near genes chr2R_10_10965001 chr2R_10965001 RAL-59 346 chr2R 11019877 11019907 chr2R 11024943 11024947 jockey 7 5062 2.0 3.0 2.5 2.0 5070 chr2R 11019877 intron luna - chr2R 11022412 intron luna - chr2R 11024947 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-59 347 chr2R 11032649 11032656 chr2R 11032743 11032750 4 94 4.5 4.0 4.2 0.8 101 chr2R 11032649 intron luna - chr2R 11032700 intron luna - chr2R 11032750 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-59 348 chr2R 11058778 11058810 chr2R 11058857 11058889 11 79 3.0 3.0 3.0 2.8 111 chr2R 11058778 intron luna - chr2R 11058834 intron luna - chr2R 11058889 intron luna - chr2R_11_11055001 chr2R_11055001 RAL-59 349 chr2R 11415529 11415545 chr2R 11418677 11418694 opus 5 3149 5.0 7.0 6.0 0.7 3165 chr2R 11415529 intron Drip - chr2R 11417112 intron Drip - chr2R 11418694 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-59 350 chr2R 11472649 11472680 chr2R 11473846 11473877 pogo 7 1197 2.0 3.0 2.5 2.0 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-59 351 chr2R 11636407 11636435 chr2R 11636485 11636503 6 72 7.0 2.5 4.8 1.0 96 chr2R 11636407 intron CG9005 - chr2R 11636455 intron CG9005 - chr2R 11636503 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-59 352 chr2R 11677873 11677883 chr2R 11677951 11677961 4 78 4.5 3.5 4.0 0.8 88 chr2R 11677873 intron,exon Roc2 -,Tret1-2 + chr2R 11677917 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677961 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-59 353 chr2R 11934075 11934099 chr2R 11934157 11934181 5 82 2.0 1.0 1.5 2.0 106 chr2R 11934075 intergenic not near genes chr2R 11934128 intergenic not near genes chr2R 11934181 intergenic not near genes chr2R_5_11930001 chr2R_11930001 RAL-59 354 chr2R 8518779 8518801 chr2R 12066173 12066195 9 3547394 4.5 12.0 8.2 1.0 3547416 chr2R 8518779 intron mtt - chr2R 10292487 intron CAP + chr2R 12066195 intron CG8888 - chr2R_9_10290001 chr2R_10290001 RAL-59 355 chr2R 12146487 12146502 chr2R 12147590 12147601 8 1111 10.5 31.0 20.8 0.4 1114 chr2R 12146487 intron,3` UTR Hen1 +,CG8878 - chr2R 12147044 intron,exon Hen1 +,CG8878 - chr2R 12147601 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-59 356 chr2R 12145908 12145947 chr2R 12148602 12148640 15 2694 24.0 32.5 28.2 0.5 2732 chr2R 12145908 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_15_12145001 chr2R_12145001 RAL-59 357 chr2R 12187471 12187481 chr2R 12190088 12190124 50 2618 96.0 97.0 96.5 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_50_12185001 chr2R_12185001 RAL-59 358 chr2R 12217578 12217591 chr2R 12217659 12217672 5 81 2.5 1.5 2.0 1.7 94 chr2R 12217578 intergenic not near genes chr2R 12217625 intergenic not near genes chr2R 12217672 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-59 359 chr2R 12284321 12284328 chr2R 12284404 12284409 4 83 0.0 3.0 1.5 1.6 88 chr2R 12284321 intron CG42700 + chr2R 12284365 intron CG42700 + chr2R 12284409 intron CG42700 + chr2R_4_12280001 chr2R_12280001 RAL-59 360 chr2R 12481145 12481168 chr2R 12482948 12482972 roo 9 1803 3.5 2.5 3.0 2.2 1827 chr2R 12481145 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482972 intron Dh44-R2 + chr2R_9_12480001 chr2R_12480001 RAL-59 361 chr2R 12501702 12501706 chr2R 12503864 12503868 Rt1c 4 2162 6.5 5.0 5.8 0.6 2166 chr2R 12501702 intron fdl - chr2R 12502785 intron fdl - chr2R 12503868 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-59 362 chr2R 12501708 12501726 chr2R 12503851 12503888 Rt1c 8 2158 1.5 3.0 2.2 2.5 2180 chr2R 12501708 intron fdl - chr2R 12502798 intron fdl - chr2R 12503888 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-59 363 chr2R 12540474 12540496 chr2R 12540557 12540577 7 81 3.5 3.5 3.5 1.6 103 chr2R 12540474 intron fra + chr2R 12540526 intron fra + chr2R 12540577 intron fra + chr2R_7_12540001 chr2R_12540001 RAL-59 364 chr2R 12597954 12597980 chr2R 12598054 12598080 5 98 3.5 2.5 3.0 1.2 126 chr2R 12597954 intron Amph + chr2R 12598017 intron Amph + chr2R 12598080 intron Amph + chr2R_5_12595001 chr2R_12595001 RAL-59 365 chr2R 12643788 12643816 chr2R 12643864 12643893 6 76 0.0 3.5 1.8 2.1 105 chr2R 12643788 intron CG8785 - chr2R 12643840 intron CG8785 - chr2R 12643893 exon CG8785 - chr2R_6_12640001 chr2R_12640001 RAL-59 366 chr2R 12698969 12698986 chr2R 12699047 12699064 4 77 0.0 0.0 0.0 4.0 95 chr2R 12698969 intergenic not near genes chr2R 12699016 intergenic not near genes chr2R 12699064 intergenic not near genes chr2R_4_12695001 chr2R_12695001 RAL-59 367 chr2R 12789297 12789325 chr2R 12797656 12797687 roo 9 8359 1.5 2.0 1.8 3.2 8390 chr2R 12789297 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797687 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-59 368 chr2R 12808003 12808036 chr2R 12808125 12808158 10 121 2.0 0.5 1.2 4.5 155 chr2R 12808003 intergenic CG17580 + chr2R 12808080 intergenic CG17580 + chr2R 12808158 intergenic CG17580 + chr2R_10_12805001 chr2R_12805001 RAL-59 369 chr2R 12819452 12819473 chr2R 12824521 12824535 jockey 7 5068 4.0 6.0 5.0 1.2 5083 chr2R 12819452 intergenic not near genes chr2R 12821994 intergenic not near genes chr2R 12824535 intergenic not near genes chr2R_7_12820001 chr2R_12820001 RAL-59 370 chr2R 12855612 12855627 chr2R 12855690 12855706 6 79 1.0 2.5 1.8 2.1 94 chr2R 12855612 intron CG17574 - chr2R 12855659 intron CG17574 - chr2R 12855706 intron CG17574 - chr2R_6_12855001 chr2R_12855001 RAL-59 371 chr2R 12879232 12879267 chr2R 12879311 12879346 13 79 1.0 2.0 1.5 5.2 114 chr2R 12879232 intron,intron Aats-asp +,Nmda1 - chr2R 12879289 intron,intron Aats-asp +,Nmda1 - chr2R 12879346 intron,intron Aats-asp +,Nmda1 - chr2R_13_12875001 chr2R_12875001 RAL-59 372 chr2R 13136835 13136868 chr2R 13141632 13141666 Doc 14 4797 4.0 2.5 3.2 3.3 4831 chr2R 13136835 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-59 373 chr2R 13266806 13266817 chr2R 13266881 13266894 4 76 4.0 6.5 5.2 0.6 88 chr2R 13266806 intergenic CG42319 + chr2R 13266850 intergenic not near genes chr2R 13266894 intergenic not near genes chr2R_4_13265001 chr2R_13265001 RAL-59 374 chr2R 13266818 13266819 chr2R 13266879 13266896 4 69 4.0 6.5 5.2 0.6 78 chr2R 13266818 intergenic CG42319 + chr2R 13266857 intergenic not near genes chr2R 13266896 intergenic not near genes chr2R_4_13265001 chr2R_13265001 RAL-59 375 chr2R 13431492 13431518 chr2R 13431571 13431597 5 79 0.0 3.0 1.5 2.0 105 chr2R 13431492 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431597 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-59 376 chr2R 13432938 13432960 chr2R 13433014 13433036 7 76 0.0 0.0 0.0 7.0 98 chr2R 13432938 intron CG42321 - chr2R 13432987 intron CG42321 - chr2R 13433036 intron,5` UTR CG42321 -,CG30065 + chr2R_7_13430001 chr2R_13430001 RAL-59 377 chr2R 13574399 13574420 chr2R 13574480 13574501 6 81 5.5 0.5 3.0 1.5 102 chr2R 13574399 intergenic CG42808 - chr2R 13574450 intergenic CG42808 -,CR44365 + chr2R 13574501 intergenic CG42808 -,CR44365 + chr2R_6_13570001 chr2R_13570001 RAL-59 378 chr2R 13580511 13580528 chr2R 13580861 13580878 jockey 6 349 0.5 4.5 2.5 1.7 367 chr2R 13580511 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580878 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-59 379 chr2R 13631066 13631086 chr2R 13631167 13631189 6 101 3.5 0.5 2.0 2.0 123 chr2R 13631066 intron fas + chr2R 13631128 intron fas + chr2R 13631189 intron fas + chr2R_6_13630001 chr2R_13630001 RAL-59 380 chr2R 13635689 13635715 chr2R 13635788 13635814 4 99 0.5 2.0 1.2 1.8 125 chr2R 13635689 intron fas + chr2R 13635752 intron fas + chr2R 13635814 intron fas + chr2R_4_13635001 chr2R_13635001 RAL-59 381 chr2R 13683876 13683904 chr2R 13683954 13683979 18 77 1.5 5.5 3.5 4.0 103 chr2R 13683876 intron fas + chr2R 13683928 intron fas + chr2R 13683979 intron fas + chr2R_18_13680001 chr2R_13680001 RAL-59 382 chr2R 13694633 13694657 chr2R 13694710 13694734 5 77 1.0 0.0 0.5 3.3 101 chr2R 13694633 intron fas + chr2R 13694684 intron fas + chr2R 13694734 intron fas + chr2R_5_13690001 chr2R_13690001 RAL-59 383 chr2R 13721205 13721219 chr2R 13721288 13721302 5 82 10.0 4.5 7.2 0.6 97 chr2R 13721205 intron fas + chr2R 13721254 intron fas + chr2R 13721302 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-59 384 chr2R 13768979 13769009 chr2R 13769078 13769107 8 99 2.5 2.5 2.5 2.3 128 chr2R 13768979 intergenic not near genes chr2R 13769043 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-59 385 chr2R 13790329 13790334 chr2R 13790404 13790410 4 76 4.0 0.0 2.0 1.3 81 chr2R 13790329 intergenic not near genes chr2R 13790370 intergenic not near genes chr2R 13790410 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-59 386 chr2R 13905610 13905629 chr2R 13907592 13907611 Rt1a 8 1982 3.5 8.5 6.0 1.1 2001 chr2R 13905610 intron shot - chr2R 13906610 intron shot - chr2R 13907611 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-59 387 chr2R 14018159 14018189 chr2R 14018243 14018273 4 84 1.0 0.5 0.8 2.2 114 chr2R 14018159 intron mam + chr2R 14018216 intron mam + chr2R 14018273 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-59 388 chr2R 14197145 14197171 chr2R 14197252 14197278 8 107 7.0 3.0 5.0 1.3 133 chr2R 14197145 exon CG30069 + chr2R 14197212 exon CG30069 + chr2R 14197278 exon CG30069 + chr2R_8_14195001 chr2R_14195001 RAL-59 389 chr2R 14342217 14342242 chr2R 14342293 14342318 13 76 3.5 2.5 3.0 3.2 101 chr2R 14342217 intron Shroom + chr2R 14342268 intron Shroom + chr2R 14342318 intron Shroom + chr2R_13_14340001 chr2R_14340001 RAL-59 390 chr2R 14393865 14393893 chr2R 14393950 14393977 10 84 5.0 3.5 4.2 1.9 112 chr2R 14393865 intergenic not near genes chr2R 14393921 intergenic not near genes chr2R 14393977 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-59 391 chr2R 14467291 14467320 chr2R 14476443 14476472 roo 12 9152 1.5 4.5 3.0 3.0 9181 chr2R 14467291 intergenic not near genes chr2R 14471882 intergenic not near genes chr2R 14476472 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-59 392 chr2R 14550528 14550557 chr2R 14550607 14550635 6 79 0.0 2.0 1.0 3.0 107 chr2R 14550528 intron ttv + chr2R 14550582 intron ttv + chr2R 14550635 intron ttv + chr2R_6_14550001 chr2R_14550001 RAL-59 393 chr2R 14610245 14610279 chr2R 14610337 14610371 14 91 6.0 6.0 6.0 2.0 126 chr2R 14610245 exon Su(var)2-HP2 - chr2R 14610308 exon Su(var)2-HP2 - chr2R 14610371 exon Su(var)2-HP2 - chr2R_14_14610001 chr2R_14610001 RAL-59 394 chr2R 14737629 14737640 chr2R 14737713 14737724 5 82 3.5 3.5 3.5 1.1 95 chr2R 14737629 3` UTR CR43428 - chr2R 14737676 3` UTR CR43428 - chr2R 14737724 3` UTR CR43428 - chr2R_5_14735001 chr2R_14735001 RAL-59 395 chr2R 14816106 14816133 chr2R 14816201 14816229 12 91 4.0 6.5 5.2 1.9 123 chr2R 14816106 intergenic not near genes chr2R 14816168 intergenic not near genes chr2R 14816229 intergenic not near genes chr2R_12_14815001 chr2R_14815001 RAL-59 396 chr2R 14878089 14878118 chr2R 14882679 14882706 12 4587 41.0 30.5 35.8 0.3 4617 chr2R 14878089 exon Cyp6a19 + chr2R 14880398 exon Cyp6a9 - chr2R 14882706 exon Cyp6a20 + chr2R_12_14880001 chr2R_14880001 RAL-59 397 chr2R 14911704 14911722 chr2R 14911827 14911845 5 123 3.5 1.0 2.2 1.6 141 chr2R 14911704 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-59 398 chr2R 14917241 14917270 chr2R 14917331 14917360 7 90 3.5 4.0 3.8 1.5 119 chr2R 14917241 intron CG10249 - chr2R 14917300 intron CG10249 - chr2R 14917360 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-59 399 chr2R 14968438 14968473 chr2R 14968520 14968555 13 77 2.5 3.5 3.0 3.2 117 chr2R 14968438 intron ckn + chr2R 14968496 intron ckn + chr2R 14968555 intron ckn + chr2R_13_14965001 chr2R_14965001 RAL-59 400 chr2R 14979763 14979793 chr2R 14979839 14979869 6 76 1.5 0.5 1.0 3.0 106 chr2R 14979763 3` UTR ckn + chr2R 14979816 3` UTR ckn + chr2R 14979869 3` UTR ckn + chr2R_6_14975001 chr2R_14975001 RAL-59 401 chr2R 15004725 15004745 chr2R 15005054 15005074 jockey 5 329 2.5 0.0 1.2 2.3 349 chr2R 15004725 intergenic not near genes chr2R 15004900 intergenic not near genes chr2R 15005074 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-59 402 chr2R 15015474 15015490 chr2R 15022898 15022908 mdg1 5 7423 3.0 2.0 2.5 1.4 7434 chr2R 15015474 intron hbs + chr2R 15019191 intron hbs + chr2R 15022908 intron hbs + chr2R_5_15015001 chr2R_15015001 RAL-59 403 chr2R 15065626 15065649 chr2R 15065703 15065727 8 77 1.5 5.5 3.5 1.8 101 chr2R 15065626 intergenic not near genes chr2R 15065676 intergenic not near genes chr2R 15065727 intergenic not near genes chr2R_8_15065001 chr2R_15065001 RAL-59 404 chr2R 15084977 15085004 chr2R 15092026 15092053 297 7 7049 6.0 1.5 3.8 1.5 7076 chr2R 15084977 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092053 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-59 405 chr2R 15119316 15119343 chr2R 15127797 15127824 Tirant 7 8481 2.0 4.5 3.2 1.7 8508 chr2R 15119316 intron chn + chr2R 15123570 intron chn + chr2R 15127824 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-59 406 chr2R 15168279 15168301 chr2R 15168372 15168394 5 93 2.5 2.5 2.5 1.4 115 chr2R 15168279 intron igl + chr2R 15168336 intron igl + chr2R 15168394 intron igl + chr2R_5_15165001 chr2R_15165001 RAL-59 407 chr2R 15201233 15201262 chr2R 15201324 15201352 6 91 0.5 0.5 0.5 4.0 119 chr2R 15201233 intergenic CG11807 +,GPHR - chr2R 15201292 5` UTR CG11807 + chr2R 15201352 5` UTR CG11807 + chr2R_6_15200001 chr2R_15200001 RAL-59 408 chr2R 15283271 15283301 chr2R 15283366 15283393 9 94 1.5 3.0 2.2 2.8 122 chr2R 15283271 intron Trpm - chr2R 15283332 intron Trpm - chr2R 15283393 intron Trpm - chr2R_9_15280001 chr2R_15280001 RAL-59 409 chr2R 15296160 15296173 chr2R 15296243 15296256 5 83 4.0 2.0 3.0 1.2 96 chr2R 15296160 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296256 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-59 410 chr2R 15375349 15375358 chr2R 15376165 15376175 4 817 0.0 1.0 0.5 2.7 826 chr2R 15375349 intergenic not near genes chr2R 15375762 intergenic not near genes chr2R 15376175 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-59 411 chr2R 15580727 15580747 chr2R 15580805 15580825 8 78 1.5 3.0 2.2 2.5 98 chr2R 15580727 intergenic not near genes chr2R 15580776 intergenic not near genes chr2R 15580825 intergenic not near genes chr2R_8_15580001 chr2R_15580001 RAL-59 412 chr2R 15697891 15697926 chr2R 15697972 15698007 9 81 1.5 0.0 0.8 5.0 116 chr2R 15697891 exon CG33462 + chr2R 15697949 3` UTR CG33462 + chr2R 15698007 3` UTR CG33462 + chr2R_9_15695001 chr2R_15695001 RAL-59 413 chr2R 15700243 15700272 chr2R 15700358 15700385 9 114 1.0 4.5 2.8 2.4 142 chr2R 15700243 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700385 intron,5` UTR CG30080 -,CG42662 - chr2R_9_15700001 chr2R_15700001 RAL-59 414 chr2R 15783793 15783824 chr2R 15783895 15783926 10 102 2.0 1.5 1.8 3.6 133 chr2R 15783793 intron Zasp52 - chr2R 15783860 intron Zasp52 - chr2R 15783926 intron Zasp52 - chr2R_10_15780001 chr2R_15780001 RAL-59 415 chr2R 15786522 15786540 chr2R 15786680 15786698 5 157 2.5 3.5 3.0 1.2 176 chr2R 15786522 intron Zasp52 - chr2R 15786610 intron Zasp52 - chr2R 15786698 intron Zasp52 - chr2R_5_15785001 chr2R_15785001 RAL-59 416 chr2R 16054952 16054959 chr2R 16055035 16055042 6 83 7.5 7.5 7.5 0.7 90 chr2R 16054952 intron CG8405 + chr2R 16054997 intron CG8405 + chr2R 16055042 intron CG8405 + chr2R_6_16050001 chr2R_16050001 RAL-59 417 chr2R 16436668 16436692 chr2R 16436746 16436769 7 73 5.5 7.0 6.2 1.0 101 chr2R 16436668 intergenic not near genes chr2R 16436718 intergenic not near genes chr2R 16436769 intergenic not near genes chr2R_7_16435001 chr2R_16435001 RAL-59 418 chr2R 16465685 16465697 chr2R 16465764 16465777 4 80 6.5 4.0 5.2 0.6 92 chr2R 16465685 intergenic not near genes chr2R 16465731 intergenic not near genes chr2R 16465777 intergenic not near genes chr2R_4_16465001 chr2R_16465001 RAL-59 419 chr2R 16489266 16489289 chr2R 16489350 16489373 6 84 1.5 3.5 2.5 1.7 107 chr2R 16489266 intergenic CG33459 + chr2R 16489320 intergenic CG33459 + chr2R 16489373 intergenic CG33459 + chr2R_6_16485001 chr2R_16485001 RAL-59 420 chr2R 16503881 16503903 chr2R 16503971 16503993 5 90 1.5 3.0 2.2 1.6 112 chr2R 16503881 intron Sema-2a + chr2R 16503937 intron Sema-2a + chr2R 16503993 intron Sema-2a + chr2R_5_16500001 chr2R_16500001 RAL-59 421 chr2R 16722126 16722141 chr2R 16722369 16722384 13 242 4.0 8.5 6.2 1.8 258 chr2R 16722126 intron CG30463 - chr2R 16722255 intron CG30463 - chr2R 16722384 intron CG30463 - chr2R_13_16720001 chr2R_16720001 RAL-59 422 chr2R 16834448 16834478 chr2R 16835049 16835079 11 600 1.5 4.0 2.8 2.9 631 chr2R 16834448 5` UTR CR43650 + chr2R 16834764 5` UTR CR43650 + chr2R 16835079 5` UTR CR43650 + chr2R_11_16830001 chr2R_16830001 RAL-59 423 chr2R 16970811 16970843 chr2R 16970889 16970921 12 78 4.5 3.0 3.8 2.5 110 chr2R 16970811 5` UTR CR44377 + chr2R 16970866 5` UTR CR44377 + chr2R 16970921 5` UTR CR44377 + chr2R_12_16970001 chr2R_16970001 RAL-59 424 chr2R 17147246 17147264 chr2R 17152277 17152295 jockey 6 5031 2.0 4.5 3.2 1.4 5049 chr2R 17147246 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-59 425 chr2R 17161355 17161363 chr2R 17161562 17161570 5 207 4.5 0.0 2.2 1.6 215 chr2R 17161355 intergenic not near genes chr2R 17161462 intergenic not near genes chr2R 17161570 intergenic not near genes chr2R_5_17160001 chr2R_17160001 RAL-59 426 chr2R 17227090 17227118 chr2R 17227170 17227195 8 80 2.5 2.5 2.5 2.3 105 chr2R 17227090 intron mbl + chr2R 17227142 intron mbl + chr2R 17227195 intron mbl + chr2R_8_17225001 chr2R_17225001 RAL-59 427 chr2R 17236521 17236541 chr2R 17241725 17241743 copia 11 5204 2.0 4.0 3.0 2.8 5222 chr2R 17236521 intron mbl + chr2R 17239132 intron mbl + chr2R 17241743 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-59 428 chr2R 17389281 17389303 chr2R 17389366 17389378 12 88 1.0 4.0 2.5 3.4 97 chr2R 17389281 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389378 intergenic CR44344 - chr2R_12_17385001 chr2R_17385001 RAL-59 429 chr2R 17459005 17459032 chr2R 17459090 17459117 7 85 3.5 1.0 2.2 2.2 112 chr2R 17459005 intron CG14478 + chr2R 17459061 intron CG14478 + chr2R 17459117 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-59 430 chr2R 17461287 17461315 chr2R 17461445 17461473 7 158 3.0 1.5 2.2 2.2 186 chr2R 17461287 intron CG14478 + chr2R 17461380 intron CG14478 + chr2R 17461473 intron CG14478 + chr2R_7_17460001 chr2R_17460001 RAL-59 431 chr2R 17556442 17556463 chr2R 17556527 17556547 6 85 1.0 2.5 1.8 2.1 105 chr2R 17556442 intergenic MESR4 + chr2R 17556494 intergenic MESR4 + chr2R 17556547 intergenic MESR4 +,Klp54D + chr2R_6_17555001 chr2R_17555001 RAL-59 432 chr2R 17561605 17561615 chr2R 17561683 17561694 6 79 3.0 5.5 4.2 1.2 89 chr2R 17561605 exon Klp54D + chr2R 17561650 intron Klp54D + chr2R 17561694 intron Klp54D + chr2R_6_17560001 chr2R_17560001 RAL-59 433 chr2R 17627748 17627784 chr2R 17628075 17628111 15 327 4.5 2.5 3.5 3.3 363 chr2R 17627748 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628111 intron CG10936 - chr2R_15_17625001 chr2R_17625001 RAL-59 434 chr2R 17784027 17784053 chr2R 17784266 17784294 pogo 5 240 1.5 6.0 3.8 1.0 267 chr2R 17784027 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-59 435 chr2R 17934129 17934154 chr2R 17934234 17934259 6 105 5.5 2.0 3.8 1.2 130 chr2R 17934129 intergenic not near genes chr2R 17934194 intergenic not near genes chr2R 17934259 intergenic not near genes chr2R_6_17930001 chr2R_17930001 RAL-59 436 chr2R 18075972 18075987 chr2R 18076066 18076081 4 94 6.0 4.0 5.0 0.7 109 chr2R 18075972 intron CG34386 + chr2R 18076026 intron CG34386 + chr2R 18076081 intron CG34386 + chr2R_4_18075001 chr2R_18075001 RAL-59 437 chr2R 18075990 18076002 chr2R 18076064 18076096 4 89 2.0 3.0 2.5 1.1 106 chr2R 18075990 intron CG34386 + chr2R 18076043 intron CG34386 + chr2R 18076096 intron CG34386 + chr2R_4_18075001 chr2R_18075001 RAL-59 438 chr2R 18255698 18255721 chr2R 18255912 18255934 4 214 0.5 0.5 0.5 2.7 236 chr2R 18255698 intergenic not near genes chr2R 18255816 intergenic not near genes chr2R 18255934 intergenic not near genes chr2R_4_18255001 chr2R_18255001 RAL-59 439 chr2R 18358388 18358416 chr2R 18372597 18372628 roo 6 14212 1.0 2.0 1.5 2.4 14240 chr2R 18358388 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372628 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-59 440 chr2R 18486616 18486846 chr2R 18487002 18487108 6 365 0.0 0.5 0.2 5.0 492 chr2R 18486616 intron CG30116 - chr2R 18486862 intron CG30116 - chr2R 18487108 intron CG30116 - chr2R_6_18485001 chr2R_18485001 RAL-59 441 chr2R 18528193 18528222 chr2R 18528277 18528305 11 83 1.0 3.5 2.2 3.4 112 chr2R 18528193 intron CG10924 + chr2R 18528249 intron CG10924 + chr2R 18528305 intron CG10924 + chr2R_11_18525001 chr2R_18525001 RAL-59 442 chr2R 18537458 18537486 chr2R 18538027 18538045 12 560 3.0 4.5 3.8 2.5 587 chr2R 18537458 3` UTR,exon CG45087 +,Pepck + chr2R 18537752 3` UTR,exon CG45087 +,Pepck + chr2R 18538045 3` UTR,exon CG45087 +,Pepck + chr2R_12_18535001 chr2R_18535001 RAL-59 443 chr2R 18575815 18575825 chr2R 18581983 18582013 3S18 5 6184 4.5 1.5 3.0 1.2 6198 chr2R 18575815 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582013 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-59 444 chr2R 18585906 18585931 chr2R 18587273 18587298 15 1367 3.5 2.0 2.8 3.9 1392 chr2R 18585906 intron GEFmeso - chr2R 18586602 intron GEFmeso - chr2R 18587298 intron GEFmeso - chr2R_15_18585001 chr2R_18585001 RAL-59 445 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 12 9152 1.5 2.0 1.8 4.3 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_12_18595001 chr2R_18595001 RAL-59 446 chr2R 18692901 18692917 chr2R 18692987 18693004 7 86 4.0 0.0 2.0 2.3 103 chr2R 18692901 intron Sik3 + chr2R 18692952 intron Sik3 + chr2R 18693004 intron Sik3 + chr2R_7_18690001 chr2R_18690001 RAL-59 447 chr2R 18785917 18785946 chr2R 18785996 18786025 11 79 4.5 3.0 3.8 2.3 108 chr2R 18785917 intron CG15080 + chr2R 18785971 intron CG15080 + chr2R 18786025 intron CG15080 + chr2R_11_18785001 chr2R_18785001 RAL-59 448 chr2R 18819058 18819068 chr2R 18819135 18819144 4 76 1.0 1.5 1.2 1.8 86 chr2R 18819058 intergenic Phb2 + chr2R 18819101 intergenic Phb2 + chr2R 18819144 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-59 449 chr2R 18953163 18953174 chr2R 18953250 18953261 6 87 3.5 0.5 2.0 2.0 98 chr2R 18953163 intron sano + chr2R 18953212 intron sano + chr2R 18953261 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-59 450 chr2R 18964918 18964953 chr2R 18964994 18965029 7 76 1.5 1.0 1.2 3.2 111 chr2R 18964918 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965029 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-59 451 chr2R 19183345 19183373 chr2R 19183421 19183449 13 76 3.5 2.5 3.0 3.2 104 chr2R 19183345 intron hppy + chr2R 19183397 intron hppy + chr2R 19183449 intron hppy + chr2R_13_19180001 chr2R_19180001 RAL-59 452 chr2R 19216563 19216583 chr2R 19216648 19216668 6 85 2.5 2.5 2.5 1.7 105 chr2R 19216563 intron hppy + chr2R 19216616 intron hppy + chr2R 19216668 intron hppy + chr2R_6_19215001 chr2R_19215001 RAL-59 453 chr2R 19533559 19533584 chr2R 19533635 19533658 12 76 5.0 2.0 3.5 2.7 99 chr2R 19533559 intron sm - chr2R 19533608 intron sm - chr2R 19533658 intron sm - chr2R_12_19530001 chr2R_19530001 RAL-59 454 chr2R 19535107 19535129 chr2R 19535323 19535344 4 216 3.0 3.5 3.2 1.0 237 chr2R 19535107 intron sm - chr2R 19535226 intron sm - chr2R 19535344 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-59 455 chr2R 19537581 19537613 chr2R 19537678 19537710 5 97 2.5 2.5 2.5 1.4 129 chr2R 19537581 intron sm - chr2R 19537646 intron sm - chr2R 19537710 intron sm - chr2R_5_19535001 chr2R_19535001 RAL-59 456 chr2R 19714705 19714732 chr2R 19714781 19714808 7 76 0.0 0.0 0.0 7.0 103 chr2R 19714705 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714808 3` UTR CG8517 + chr2R_7_19710001 chr2R_19710001 RAL-59 457 chr2R 19922607 19922618 chr2R 19922684 19922695 8 76 4.5 3.5 4.0 1.6 88 chr2R 19922607 intergenic not near genes chr2R 19922651 intergenic not near genes chr2R 19922695 intergenic not near genes chr2R_8_19920001 chr2R_19920001 RAL-59 458 chr2R 19957442 19957456 chr2R 19962644 19962658 copia 6 5202 5.0 5.0 5.0 1.0 5216 chr2R 19957442 intergenic CG44623 + chr2R 19960050 intergenic not near genes chr2R 19962658 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-59 459 chr2R 19957459 19957461 chr2R 19962639 19962663 copia 4 5196 4.5 4.5 4.5 0.7 5204 chr2R 19957459 intergenic CG44623 + chr2R 19960061 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-59 460 chr2R 20069244 20069261 chr2R 20071874 20071889 opus 5 2630 4.0 1.0 2.5 1.4 2645 chr2R 20069244 intergenic not near genes chr2R 20070566 intergenic not near genes chr2R 20071889 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-59 461 chr2R 20080602 20080619 chr2R 20080679 20080696 6 77 0.0 2.0 1.0 3.0 94 chr2R 20080602 intergenic not near genes chr2R 20080649 intergenic not near genes chr2R 20080696 intergenic not near genes chr2R_6_20080001 chr2R_20080001 RAL-59 462 chr2R 20196757 20196783 chr2R 20196865 20196868 4 103 3.0 0.0 1.5 1.6 111 chr2R 20196757 intergenic not near genes chr2R 20196812 intergenic not near genes chr2R 20196868 intergenic not near genes chr2R_4_20195001 chr2R_20195001 RAL-59 463 chr2R 20352639 20352669 chr2R 20352858 20352888 14 219 4.5 5.0 4.8 2.4 249 chr2R 20352639 intergenic not near genes chr2R 20352764 intergenic not near genes chr2R 20352888 intergenic not near genes chr2R_14_20350001 chr2R_20350001 RAL-59 464 chr2R 20405070 20405103 chr2R 20405156 20405188 7 83 2.0 0.0 1.0 3.5 118 chr2R 20405070 intergenic not near genes chr2R 20405129 intergenic not near genes chr2R 20405188 intergenic not near genes chr2R_7_20405001 chr2R_20405001 RAL-59 465 chr2R 20508185 20508207 chr2R 20508261 20508285 5 77 1.5 3.5 2.5 1.4 100 chr2R 20508185 intergenic CR44646 + chr2R 20508235 intergenic CR44646 + chr2R 20508285 intergenic CR44646 + chr2R_5_20505001 chr2R_20505001 RAL-59 466 chr2R 20523038 20523067 chr2R 20523148 20523178 16 109 4.0 6.0 5.0 2.7 140 chr2R 20523038 intergenic not near genes chr2R 20523108 intergenic not near genes chr2R 20523178 intergenic not near genes chr2R_16_20520001 chr2R_20520001 RAL-59 467 chr2R 20702679 20702703 chr2R 20702755 20702779 7 75 2.0 4.0 3.0 1.8 100 chr2R 20702679 intron dpr + chr2R 20702729 intron dpr + chr2R 20702779 intron dpr + chr2R_7_20700001 chr2R_20700001 RAL-59 468 chr2R 20739443 20739477 chr2R 20744211 20744240 F-element 5 4767 2.0 2.5 2.2 1.6 4797 chr2R 20739443 intron dpr + chr2R 20741842 intron dpr + chr2R 20744240 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-59 469 chr2R 20861545 20861563 chr2R 20861830 20861848 6 285 0.0 1.5 0.8 3.3 303 chr2R 20861545 intergenic not near genes chr2R 20861696 intergenic not near genes chr2R 20861848 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-59 470 chr2R 21031545 21031566 chr2R 21031624 21031635 6 77 2.5 1.0 1.8 2.1 90 chr2R 21031545 intergenic not near genes chr2R 21031590 intergenic not near genes chr2R 21031635 intergenic not near genes chr2R_6_21030001 chr2R_21030001 RAL-59 471 chr2R 21136898 21136913 chr2R 21136982 21136997 7 83 5.0 3.0 4.0 1.4 99 chr2R 21136898 intron Magi - chr2R 21136948 intron Magi - chr2R 21136997 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-59 472 chr2R 21221007 21221042 chr2R 21221099 21221134 13 91 1.5 5.0 3.2 3.1 127 chr2R 21221007 exon ASPP - chr2R 21221070 exon ASPP - chr2R 21221134 exon ASPP - chr2R_13_21220001 chr2R_21220001 RAL-59 473 chr2R 21253692 21253707 chr2R 21253815 21253833 5 122 2.0 2.0 2.0 1.7 141 chr2R 21253692 intergenic not near genes chr2R 21253762 intergenic not near genes chr2R 21253833 intergenic not near genes chr2R_5_21250001 chr2R_21250001 RAL-59 474 chr2R 21592845 21592855 chr2R 21592928 21592938 5 82 11.0 11.5 11.2 0.4 93 chr2R 21592845 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592938 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-59 475 chr2R 21730875 21730898 chr2R 21730981 21731005 8 105 4.0 2.5 3.2 1.9 130 chr2R 21730875 intergenic not near genes chr2R 21730940 intergenic not near genes chr2R 21731005 intergenic not near genes chr2R_8_21730001 chr2R_21730001 RAL-59 476 chr2R 21753086 21753114 chr2R 21753570 21753598 roo 6 485 2.0 2.0 2.0 2.0 512 chr2R 21753086 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-59 477 chr2R 21759566 21759591 chr2R 21759653 21759678 5 87 2.5 3.0 2.8 1.3 112 chr2R 21759566 intergenic not near genes chr2R 21759622 intergenic not near genes chr2R 21759678 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-59 478 chr2R 21840797 21840827 chr2R 21840873 21840903 11 75 2.5 3.5 3.0 2.8 106 chr2R 21840797 intergenic not near genes chr2R 21840850 intergenic not near genes chr2R 21840903 intergenic not near genes chr2R_11_21840001 chr2R_21840001 RAL-59 479 chr2R 21857345 21857363 chr2R 21857436 21857454 4 90 4.0 3.0 3.5 0.9 109 chr2R 21857345 intergenic not near genes chr2R 21857400 intergenic not near genes chr2R 21857454 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-59 480 chr2R 21869991 21870023 chr2R 21870298 21870330 15 307 3.5 2.0 2.8 3.9 339 chr2R 21869991 intergenic not near genes chr2R 21870160 intergenic not near genes chr2R 21870330 intergenic not near genes chr2R_15_21870001 chr2R_21870001 RAL-59 481 chr2R 21919873 21919903 chr2R 21919961 21919991 9 86 1.0 1.0 1.0 4.5 118 chr2R 21919873 intron Fili + chr2R 21919932 intron Fili + chr2R 21919991 intron Fili + chr2R_9_21915001 chr2R_21915001 RAL-59 482 chr2R 21932246 21932282 chr2R 21932324 21932360 13 74 4.0 3.5 3.8 2.7 114 chr2R 21932246 intron Fili + chr2R 21932303 intron Fili + chr2R 21932360 intron Fili + chr2R_13_21930001 chr2R_21930001 RAL-59 483 chr2R 21985541 21985560 chr2R 21985622 21985641 5 81 1.5 1.5 1.5 2.0 100 chr2R 21985541 intergenic CG30401 - chr2R 21985591 intergenic CG30401 - chr2R 21985641 3` UTR CG30401 - chr2R_5_21985001 chr2R_21985001 RAL-59 484 chr2R 22004299 22004317 chr2R 22004393 22004411 4 94 1.0 0.0 0.5 2.7 112 chr2R 22004299 intron CG34370 - chr2R 22004355 intron CG34370 - chr2R 22004411 intron CG34370 - chr2R_4_22000001 chr2R_22000001 RAL-59 485 chr2R 22179220 22179233 chr2R 22179303 22179316 9 82 0.0 8.0 4.0 1.8 96 chr2R 22179220 intron CG11170 - chr2R 22179268 intron CG11170 - chr2R 22179316 intron CG11170 - chr2R_9_22175001 chr2R_22175001 RAL-59 486 chr2R 22349693 22349716 chr2R 22351472 22351497 jockey 11 1780 2.0 3.0 2.5 3.1 1804 chr2R 22349693 intron Liprin-gamma - chr2R 22350595 intron Liprin-gamma - chr2R 22351497 intron Liprin-gamma - chr2R_11_22350001 chr2R_22350001 RAL-59 487 chr2R 22360384 22360392 chr2R 22360817 22360824 jockey 4 432 5.0 1.0 3.0 1.0 440 chr2R 22360384 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360824 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-59 488 chr2R 22525758 22525775 chr2R 22529317 22529334 jockey 5 3559 2.0 2.5 2.2 1.6 3576 chr2R 22525758 intron px - chr2R 22527546 intron px - chr2R 22529334 intron px - chr2R_5_22525001 chr2R_22525001 RAL-59 489 chr2R 22545617 22545643 chr2R 22545696 22545722 4 79 1.5 0.5 1.0 2.0 105 chr2R 22545617 intron px - chr2R 22545670 intron px - chr2R 22545722 intron px - chr2R_4_22545001 chr2R_22545001 RAL-59 490 chr2R 22623452 22623485 chr2R 22623592 22623625 8 140 2.0 3.0 2.5 2.3 173 chr2R 22623452 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623625 intron CG33143 + chr2R_8_22620001 chr2R_22620001 RAL-59 491 chr2R 22643931 22643955 chr2R 22644012 22644036 9 81 2.0 3.0 2.5 2.6 105 chr2R 22643931 intergenic Ugt58Fa - chr2R 22643984 intergenic Ugt58Fa - chr2R 22644036 intergenic Ugt58Fa - chr2R_9_22640001 chr2R_22640001 RAL-59 492 chr2R 22723244 22723266 chr2R 22723320 22723342 4 76 0.5 3.5 2.0 1.3 98 chr2R 22723244 intron jbug - chr2R 22723293 intron jbug - chr2R 22723342 intron jbug - chr2R_4_22720001 chr2R_22720001 RAL-59 493 chr2R 22774201 22774230 chr2R 22774509 22774538 17 308 3.5 4.0 3.8 3.5 337 chr2R 22774201 intron CG42260 - chr2R 22774370 intron CG42260 - chr2R 22774538 intron CG42260 - chr2R_17_22770001 chr2R_22770001 RAL-59 494 chr2R 22774965 22775001 chr2R 22775384 22775420 jockey 7 419 1.5 0.0 0.8 3.9 455 chr2R 22774965 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_7_22775001 chr2R_22775001 RAL-59 495 chr2R 22903653 22903678 chr2R 22903878 22903907 7 228 3.5 3.0 3.2 1.7 254 chr2R 22903653 intron nahoda + chr2R 22903780 intron nahoda + chr2R 22903907 intron nahoda + chr2R_7_22900001 chr2R_22900001 RAL-59 496 chr2R 22906381 22906409 chr2R 22906578 22906608 13 197 4.5 6.0 5.2 2.1 227 chr2R 22906381 intron nahoda + chr2R 22906494 intron nahoda + chr2R 22906608 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-59 497 chr2R 23045337 23045353 chr2R 23045551 23045567 4 214 5.5 0.0 2.8 1.1 230 chr2R 23045337 intron twi + chr2R 23045452 intron twi + chr2R 23045567 intron twi + chr2R_4_23045001 chr2R_23045001 RAL-59 498 chr2R 23052653 23052685 chr2R 23052729 23052760 7 76 0.5 0.0 0.2 5.8 107 chr2R 23052653 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-59 499 chr2R 23061774 23061782 chr2R 23061868 23061876 5 94 2.5 4.0 3.2 1.2 102 chr2R 23061774 3` UTR l(2)06496 - chr2R 23061825 3` UTR l(2)06496 - chr2R 23061876 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-59 500 chr2R 23219006 23219025 chr2R 23219245 23219264 4 239 5.0 0.0 2.5 1.1 258 chr2R 23219006 intergenic not near genes chr2R 23219135 intergenic not near genes chr2R 23219264 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-59 501 chr2R 23522432 23522443 chr2R 23522493 23522505 6 66 6.0 1.0 3.5 1.3 73 chr2R 23522432 intron RabX1 - chr2R 23522468 intron RabX1 - chr2R 23522505 intron RabX1 - chr2R_6_23520001 chr2R_23520001 RAL-59 502 chr2R 23529582 23529607 chr2R 23537156 23537182 412 7 7572 4.0 5.5 4.8 1.2 7600 chr2R 23529582 intron bw - chr2R 23533382 intron bw - chr2R 23537182 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-59 503 chr2R 23607036 23607187 chr2R 23607117 23607280 12 82 2.0 3.5 2.8 3.2 244 chr2R 23607036 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607280 intron CG17664 - chr2R_12_23605001 chr2R_23605001 RAL-59 504 chr2R 23635706 23635727 chr2R 23635782 23635803 7 76 1.0 3.0 2.0 2.3 97 chr2R 23635706 intron retn + chr2R 23635754 intron retn + chr2R 23635803 intron retn + chr2R_7_23635001 chr2R_23635001 RAL-59 505 chr2R 23726223 23726254 chr2R 23726313 23726343 12 88 5.5 6.0 5.8 1.8 120 chr2R 23726223 intron Sesn + chr2R 23726283 intron Sesn + chr2R 23726343 intron Sesn + chr2R_12_23725001 chr2R_23725001 RAL-59 506 chr2R 23784479 23784507 chr2R 23784556 23784585 8 78 1.5 2.0 1.8 2.9 106 chr2R 23784479 intron CG9850 - chr2R 23784532 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_8_23780001 chr2R_23780001 RAL-59 507 chr2R 23802286 23802303 chr2R 23802389 23802406 5 102 3.5 8.5 6.0 0.7 120 chr2R 23802286 3` UTR CG30177 + chr2R 23802346 3` UTR CG30177 + chr2R 23802406 3` UTR CG30177 + chr2R_5_23800001 chr2R_23800001 RAL-59 508 chr2R 23886689 23886723 chr2R 23886777 23886788 13 83 3.5 5.0 4.2 2.5 99 chr2R 23886689 intergenic CG5597 + chr2R 23886738 intergenic CG5597 + chr2R 23886788 intergenic CG5597 + chr2R_13_23885001 chr2R_23885001 RAL-59 509 chr2R 23914297 23914332 chr2R 23921921 23921954 412 11 7624 2.0 7.0 4.5 2.0 7657 chr2R 23914297 exon kcc + chr2R 23918126 intron kcc + chr2R 23921954 intron kcc + chr2R_11_23915001 chr2R_23915001 RAL-59 510 chr2R 24031379 24031413 chr2R 24031463 24031497 12 84 1.5 2.0 1.8 4.3 118 chr2R 24031379 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-59 511 chr2R 24099607 24099630 chr2R 24099689 24099712 5 82 2.5 3.5 3.0 1.2 105 chr2R 24099607 5` UTR enok + chr2R 24099660 intron enok + chr2R 24099712 intron enok + chr2R_5_24095001 chr2R_24095001 RAL-59 512 chr2R 24118300 24118318 chr2R 24118383 24118398 4 82 5.5 9.0 7.2 0.5 98 chr2R 24118300 intron CG3257 + chr2R 24118349 intron CG3257 + chr2R 24118398 intron CG3257 + chr2R_4_24115001 chr2R_24115001 RAL-59 513 chr2R 24147067 24147097 chr2R 24154644 24154675 412 13 7577 3.0 4.0 3.5 2.9 7608 chr2R 24147067 intron Dat + chr2R 24150871 intron Dat + chr2R 24154675 intron Dat + chr2R_13_24150001 chr2R_24150001 RAL-59 514 chr2R 24177239 24177269 chr2R 24184724 24184754 412 4 7485 0.5 0.5 0.5 2.7 7515 chr2R 24177239 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-59 515 chr2R 24303891 24303915 chr2R 24303972 24303999 12 83 3.5 0.0 1.8 4.3 108 chr2R 24303891 intergenic not near genes chr2R 24303945 intergenic not near genes chr2R 24303999 intergenic not near genes chr2R_12_24300001 chr2R_24300001 RAL-59 516 chr2R 24353432 24353452 chr2R 24361794 24361814 roo 5 8362 3.5 5.0 4.2 1.0 8382 chr2R 24353432 intron,intron bs +,CR44811 - chr2R 24357623 intron,intron bs +,CR44811 - chr2R 24361814 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-59 517 chr2R 24430719 24430947 chr2R 24430853 24431035 9 97 0.0 0.0 0.0 9.0 316 chr2R 24430719 intergenic CG15873 - chr2R 24430877 intergenic CG15873 -,Pgam5-2 - chr2R 24431035 intergenic Pgam5-2 -,CG15873 - chr2R_9_24430001 chr2R_24430001 RAL-59 518 chr2R 24483638 24483671 chr2R 24483718 24483746 18 79 7.0 0.0 3.5 4.0 108 chr2R 24483638 intron CG13579 + chr2R 24483692 intron CG13579 + chr2R 24483746 intron CG13579 + chr2R_18_24480001 chr2R_24480001 RAL-59 519 chr2R 24509310 24509338 chr2R 24509395 24509422 8 83 2.5 4.0 3.2 1.9 112 chr2R 24509310 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509422 intergenic Letm1 - chr2R_8_24505001 chr2R_24505001 RAL-59 520 chr2R 24590110 24590146 chr2R 24590202 24590238 12 88 4.0 4.5 4.2 2.3 128 chr2R 24590110 intron pio + chr2R 24590174 intron pio + chr2R 24590238 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-59 521 chr2R 24591521 24591546 chr2R 24591597 24591622 4 72 1.5 2.0 1.8 1.4 101 chr2R 24591521 intron pio + chr2R 24591572 intron pio + chr2R 24591622 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-59 522 chr2R 24647593 24647610 chr2R 24655150 24655167 412 5 7557 3.0 0.5 1.8 1.8 7574 chr2R 24647593 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655167 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-59 523 chr2R 24719799 24719826 chr2R 24719909 24719938 14 111 2.0 8.0 5.0 2.3 139 chr2R 24719799 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_14_24715001 chr2R_24715001 RAL-59 524 chr2R 24727886 24727918 chr2R 24735393 24735424 mdg1 10 7505 2.5 4.5 3.5 2.2 7538 chr2R 24727886 intron Mid1 - chr2R 24731655 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-59 525 chr2R 24763615 24763642 chr2R 24765591 24765618 G2 13 1974 4.5 5.0 4.8 2.2 2003 chr2R 24763615 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_13_24760001 chr2R_24760001 RAL-59 526 chr2R 24844349 24844376 chr2R 24844430 24844463 10 85 0.5 3.5 2.0 3.3 114 chr2R 24844349 intergenic not near genes chr2R 24844406 intergenic not near genes chr2R 24844463 intergenic not near genes chr2R_10_24840001 chr2R_24840001 RAL-59 527 chr2R 25014544 25014571 chr2R 25014619 25014647 19 75 3.0 1.0 2.0 6.3 103 chr2R 25014544 intron uzip + chr2R 25014596 intron uzip + chr2R 25014647 intron uzip + chr2R_19_25010001 chr2R_25010001 RAL-59 528 chr2R 25105485 25105512 chr2R 25105588 25105615 8 103 1.5 2.5 2.0 2.7 130 chr2R 25105485 intron lov - chr2R 25105550 intron lov - chr2R 25105615 intron lov - chr2R_8_25105001 chr2R_25105001 RAL-59 529 chr2R 25107963 25107980 chr2R 25108207 25108224 9 245 18.5 15.5 17.0 0.5 261 chr2R 25107963 intron lov - chr2R 25108094 intron lov - chr2R 25108224 intron lov - chr2R_9_25105001 chr2R_25105001 RAL-59 530 chr3L 76111 76140 chr3L 76311 76340 10 200 21.5 20.0 20.8 0.5 229 chr3L 76111 intergenic not near genes chr3L 76226 intergenic not near genes chr3L 76340 intergenic not near genes chr3L_10_75001 chr3L_75001 RAL-59 531 chr3L 159308 159326 chr3L 159403 159421 6 95 5.5 1.0 3.2 1.4 113 chr3L 159308 intron p130CAS + chr3L 159364 intron p130CAS + chr3L 159421 intron p130CAS + chr3L_6_155001 chr3L_155001 RAL-59 532 chr3L 402385 402409 chr3L 402463 402487 5 78 0.0 4.5 2.2 1.6 102 chr3L 402385 intergenic not near genes chr3L 402436 intergenic not near genes chr3L 402487 intergenic not near genes chr3L_5_400001 chr3L_400001 RAL-59 533 chr3L 402693 402712 chr3L 409746 409765 297 10 7053 4.0 4.0 4.0 2.0 7072 chr3L 402693 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409765 intergenic not near genes chr3L_10_405001 chr3L_405001 RAL-59 534 chr3L 514283 514305 chr3L 514360 514382 9 77 2.5 3.5 3.0 2.2 99 chr3L 514283 intron klar - chr3L 514332 intron klar - chr3L 514382 intron klar - chr3L_9_510001 chr3L_510001 RAL-59 535 chr3L 563973 564002 chr3L 564152 564181 7 179 3.0 4.0 3.5 1.6 208 chr3L 563973 intron hipk + chr3L 564077 intron hipk + chr3L 564181 intron hipk + chr3L_7_560001 chr3L_560001 RAL-59 536 chr3L 615833 615847 chr3L 615907 615923 4 74 2.0 4.5 3.2 1.0 90 chr3L 615833 3` UTR CR42719 - chr3L 615878 3` UTR CR42719 - chr3L 615923 3` UTR CR42719 - chr3L_4_615001 chr3L_615001 RAL-59 537 chr3L 643070 643078 chr3L 643147 643155 4 77 4.5 8.0 6.2 0.6 85 chr3L 643070 5` UTR CR43334 + chr3L 643112 5` UTR CR43334 + chr3L 643155 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-59 538 chr3L 649714 649744 chr3L 649806 649808 7 85 3.0 2.0 2.5 2.0 94 chr3L 649714 intron Gale + chr3L 649761 intron Gale + chr3L 649808 intron Gale + chr3L_7_645001 chr3L_645001 RAL-59 539 chr3L 662921 662944 chr3L 662995 663023 5 78 7.0 4.5 5.8 0.7 102 chr3L 662921 intergenic not near genes chr3L 662972 intergenic not near genes chr3L 663023 intergenic not near genes chr3L_5_660001 chr3L_660001 RAL-59 540 chr3L 705246 705257 chr3L 705322 705333 4 76 5.5 4.5 5.0 0.7 87 chr3L 705246 intergenic CR44514 + chr3L 705290 intergenic CR44514 + chr3L 705333 5` UTR CR44514 + chr3L_4_705001 chr3L_705001 RAL-59 541 chr3L 858007 858029 chr3L 866485 866497 Tirant 9 8477 3.5 5.5 4.5 1.6 8490 chr3L 858007 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866497 intergenic CG12502 + chr3L_9_860001 chr3L_860001 RAL-59 542 chr3L 925176 925210 chr3L 932602 932635 mdg1 8 7425 3.0 2.0 2.5 2.3 7459 chr3L 925176 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-59 543 chr3L 939771 939801 chr3L 940892 940922 jockey 7 1121 2.0 2.0 2.0 2.3 1151 chr3L 939771 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-59 544 chr3L 1015028 1015055 chr3L 1015138 1015167 11 111 5.5 2.5 4.0 2.2 139 chr3L 1015028 intron trio - chr3L 1015098 intron trio - chr3L 1015167 intron trio - chr3L_11_1015001 chr3L_1015001 RAL-59 545 chr3L 1031575 1031606 chr3L 1031651 1031682 10 74 4.5 4.0 4.2 1.9 107 chr3L 1031575 intron trio - chr3L 1031628 intron trio - chr3L 1031682 intron trio - chr3L_10_1030001 chr3L_1030001 RAL-59 546 chr3L 1040550 1040557 chr3L 1040634 1040641 6 84 4.5 2.0 3.2 1.4 91 chr3L 1040550 intron bab1 - chr3L 1040596 intron bab1 - chr3L 1040641 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-59 547 chr3L 1145240 1145267 chr3L 1145319 1145346 9 79 1.5 0.0 0.8 5.0 106 chr3L 1145240 intron bab2 - chr3L 1145293 intron bab2 - chr3L 1145346 intron bab2 - chr3L_9_1145001 chr3L_1145001 RAL-59 548 chr3L 1154137 1154158 chr3L 1163287 1163308 roo 6 9150 1.0 4.0 2.5 1.7 9171 chr3L 1154137 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163308 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-59 549 chr3L 1208316 1208338 chr3L 1208406 1208437 9 96 3.5 5.5 4.5 1.6 121 chr3L 1208316 intron mwh + chr3L 1208376 intron mwh + chr3L 1208437 intron mwh + chr3L_9_1205001 chr3L_1205001 RAL-59 550 chr3L 1219596 1219622 chr3L 1227328 1227354 412 10 7733 6.0 5.0 5.5 1.5 7758 chr3L 1219596 intron mwh + chr3L 1223475 intron mwh + chr3L 1227354 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-59 551 chr3L 1361295 1361309 chr3L 1361371 1361384 4 76 10.0 4.5 7.2 0.5 89 chr3L 1361295 intron Ptp61F - chr3L 1361340 intron Ptp61F - chr3L 1361384 intron Ptp61F - chr3L_4_1360001 chr3L_1360001 RAL-59 552 chr3L 1361310 1361323 chr3L 1361366 1361391 5 69 7.0 4.5 5.8 0.7 81 chr3L 1361310 intron Ptp61F - chr3L 1361350 intron Ptp61F - chr3L 1361391 intron Ptp61F - chr3L_5_1360001 chr3L_1360001 RAL-59 553 chr3L 1415774 1415806 chr3L 1415855 1415883 13 81 5.5 2.5 4.0 2.6 109 chr3L 1415774 intron Ptp61F - chr3L 1415828 intron Ptp61F - chr3L 1415883 intron Ptp61F - chr3L_13_1415001 chr3L_1415001 RAL-59 554 chr3L 1479576 1479611 chr3L 1479857 1479892 15 281 2.0 2.0 2.0 5.0 316 chr3L 1479576 intron stet - chr3L 1479734 intron stet - chr3L 1479892 intron stet - chr3L_15_1475001 chr3L_1475001 RAL-59 555 chr3L 1485738 1485743 chr3L 1486908 1486914 1360 5 1170 4.5 13.5 9.0 0.5 1176 chr3L 1485738 intron stet - chr3L 1486326 intron stet - chr3L 1486914 intron stet - chr3L_5_1485001 chr3L_1485001 RAL-59 556 chr3L 1505996 1506027 chr3L 1513593 1513624 17.6 10 7597 1.5 2.0 1.8 3.6 7628 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513624 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-59 557 chr3L 1529786 1529818 chr3L 1529862 1529894 13 74 3.5 7.5 5.5 2.0 108 chr3L 1529786 intron,exon CG12090 -,Ir62a - chr3L 1529840 intron,exon CG12090 -,Ir62a - chr3L 1529894 intron,exon CG12090 -,Ir62a - chr3L_13_1525001 chr3L_1525001 RAL-59 558 chr3L 1569525 1569530 chr3L 1569601 1569606 4 76 5.0 10.5 7.8 0.5 81 chr3L 1569525 5` UTR CG12004 + chr3L 1569566 intron CG12004 + chr3L 1569606 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-59 559 chr3L 1684025 1684046 chr3L 1684100 1684118 8 76 4.5 1.5 3.0 2.0 93 chr3L 1684025 intron CG7991 + chr3L 1684072 intron CG7991 + chr3L 1684118 intron CG7991 + chr3L_8_1680001 chr3L_1680001 RAL-59 560 chr3L 1728517 1728546 chr3L 1728602 1728611 4 80 3.0 1.0 2.0 1.3 94 chr3L 1728517 intron drpr - chr3L 1728564 intron drpr - chr3L 1728611 intron drpr - chr3L_4_1725001 chr3L_1725001 RAL-59 561 chr3L 1991122 1991153 chr3L 1991200 1991231 5 78 1.5 1.5 1.5 2.0 109 chr3L 1991122 intergenic not near genes chr3L 1991176 intergenic not near genes chr3L 1991231 intergenic not near genes chr3L_5_1990001 chr3L_1990001 RAL-59 562 chr3L 1993077 1993104 chr3L 1993160 1993187 7 83 1.5 2.0 1.8 2.5 110 chr3L 1993077 intergenic not near genes chr3L 1993132 intergenic not near genes chr3L 1993187 intergenic not near genes chr3L_7_1990001 chr3L_1990001 RAL-59 563 chr3L 2139207 2139234 chr3L 2139288 2139315 8 81 2.0 3.0 2.5 2.3 108 chr3L 2139207 intron zormin - chr3L 2139261 intron zormin - chr3L 2139315 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-59 564 chr3L 2168772 2168806 chr3L 2168863 2168897 7 91 3.0 1.5 2.2 2.2 125 chr3L 2168772 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-59 565 chr3L 2261157 2261191 chr3L 2261321 2261355 23 163 5.5 4.0 4.8 4.0 198 chr3L 2261157 intron oxt - chr3L 2261256 intron oxt - chr3L 2261355 intron oxt - chr3L_23_2260001 chr3L_2260001 RAL-59 566 chr3L 2411335 2411344 chr3L 2411415 2411424 5 80 1.5 2.5 2.0 1.7 89 chr3L 2411335 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411424 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-59 567 chr3L 2447504 2447538 chr3L 2456660 2456693 roo 14 9153 4.5 5.0 4.8 2.4 9189 chr3L 2447504 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_14_2450001 chr3L_2450001 RAL-59 568 chr3L 2533649 2533682 chr3L 2533731 2533764 12 81 4.0 2.5 3.2 2.9 115 chr3L 2533649 intron Spn - chr3L 2533706 intron Spn - chr3L 2533764 intron Spn - chr3L_12_2530001 chr3L_2530001 RAL-59 569 chr3L 2626087 2626099 chr3L 2626188 2626200 4 100 2.0 3.5 2.8 1.1 113 chr3L 2626087 intron Pxn - chr3L 2626144 intron Pxn - chr3L 2626200 intron Pxn - chr3L_4_2625001 chr3L_2625001 RAL-59 570 chr3L 2683947 2683975 chr3L 2684023 2684051 5 76 1.5 1.5 1.5 2.0 104 chr3L 2683947 intron Fife - chr3L 2683999 intron Fife - chr3L 2684051 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-59 571 chr3L 2812748 2812761 chr3L 2813089 2813102 5 341 4.0 2.5 3.2 1.2 354 chr3L 2812748 intron CG43444 - chr3L 2812925 intron CG43444 - chr3L 2813102 intron CG43444 - chr3L_5_2810001 chr3L_2810001 RAL-59 572 chr3L 2854606 2854625 chr3L 2854683 2854702 4 76 3.0 0.0 1.5 1.6 96 chr3L 2854606 intron CG43444 - chr3L 2854654 intron CG43444 - chr3L 2854702 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-59 573 chr3L 2927841 2927867 chr3L 2936118 2936122 Tirant 6 8273 2.5 0.0 1.2 2.7 8281 chr3L 2927841 intron Shab + chr3L 2931982 intron Shab + chr3L 2936122 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-59 574 chr3L 2987715 2987732 chr3L 2987795 2987814 6 81 3.5 0.0 1.8 2.1 99 chr3L 2987715 intergenic not near genes chr3L 2987764 intergenic not near genes chr3L 2987814 intergenic not near genes chr3L_6_2985001 chr3L_2985001 RAL-59 575 chr3L 3028339 3028369 chr3L 3028418 3028448 13 78 4.0 2.0 3.0 3.2 109 chr3L 3028339 intergenic not near genes chr3L 3028394 intergenic not near genes chr3L 3028448 intergenic not near genes chr3L_13_3025001 chr3L_3025001 RAL-59 576 chr3L 3061298 3061316 chr3L 3069867 3069890 Tirant 6 8576 2.5 1.5 2.0 2.0 8592 chr3L 3061298 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069890 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-59 577 chr3L 3102815 3102849 chr3L 3102901 3102935 11 85 2.0 2.0 2.0 3.7 120 chr3L 3102815 intron Cht7 - chr3L 3102875 intron Cht7 - chr3L 3102935 intron Cht7 - chr3L_11_3100001 chr3L_3100001 RAL-59 578 chr3L 3253125 3253154 chr3L 3253218 3253248 9 94 0.5 3.5 2.0 3.0 123 chr3L 3253125 5` UTR CR43626 + chr3L 3253186 5` UTR CR43626 + chr3L 3253248 5` UTR CR43626 + chr3L_9_3250001 chr3L_3250001 RAL-59 579 chr3L 3259819 3259832 chr3L 3259919 3259932 5 100 1.5 1.5 1.5 2.0 113 chr3L 3259819 intron ckd + chr3L 3259876 intron ckd + chr3L 3259932 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-59 580 chr3L 3281442 3281473 chr3L 3281938 3281969 Doc 18 495 2.5 7.0 4.8 3.1 527 chr3L 3281442 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_18_3280001 chr3L_3280001 RAL-59 581 chr3L 3314169 3314203 chr3L 3314278 3314312 20 107 6.5 7.0 6.8 2.6 143 chr3L 3314169 intergenic ZnT63C +,Drsl2 + chr3L 3314240 intergenic Drsl2 +,ZnT63C + chr3L 3314312 intergenic Drsl2 +,ZnT63C + chr3L_20_3310001 chr3L_3310001 RAL-59 582 chr3L 3446391 3446404 chr3L 3446528 3446542 7 136 0.0 6.0 3.0 1.8 151 chr3L 3446391 intron eIF5B - chr3L 3446466 intron eIF5B - chr3L 3446542 intron eIF5B - chr3L_7_3445001 chr3L_3445001 RAL-59 583 chr3L 3475073 3475110 chr3L 3475517 3475554 jockey 11 444 1.0 5.5 3.2 2.6 481 chr3L 3475073 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-59 584 chr3L 3484287 3484316 chr3L 3484379 3484408 5 92 2.0 2.0 2.0 1.7 121 chr3L 3484287 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484408 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-59 585 chr3L 3581765 3581778 chr3L 3581850 3581863 4 85 0.5 1.5 1.0 2.0 98 chr3L 3581765 intron Eip63E + chr3L 3581814 intron Eip63E + chr3L 3581863 intron Eip63E + chr3L_4_3580001 chr3L_3580001 RAL-59 586 chr3L 3601298 3601329 chr3L 3606609 3606640 copia 4 5311 3.5 1.5 2.5 1.1 5342 chr3L 3601298 intron Eip63E + chr3L 3603969 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-59 587 chr3L 3655591 3655612 chr3L 3655689 3655710 7 98 0.5 1.5 1.0 3.5 119 chr3L 3655591 intergenic not near genes chr3L 3655650 intergenic not near genes chr3L 3655710 intergenic not near genes chr3L_7_3655001 chr3L_3655001 RAL-59 588 chr3L 3833737 3833757 chr3L 3833978 3833998 pogo 5 241 3.5 0.5 2.0 1.7 261 chr3L 3833737 intron enc + chr3L 3833868 intron enc + chr3L 3833998 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-59 589 chr3L 3926893 3926925 chr3L 3926976 3927007 4 83 0.5 1.0 0.8 2.2 114 chr3L 3926893 intron Eip63F-1 - chr3L 3926950 intron Eip63F-1 - chr3L 3927007 intron Eip63F-1 - chr3L_4_3925001 chr3L_3925001 RAL-59 590 chr3L 3935699 3935728 chr3L 3935791 3935822 7 93 2.5 2.0 2.2 2.2 123 chr3L 3935699 5` UTR Eip63F-2 + chr3L 3935760 5` UTR Eip63F-2 + chr3L 3935822 5` UTR Eip63F-2 + chr3L_7_3935001 chr3L_3935001 RAL-59 591 chr3L 3955848 3955859 chr3L 3955938 3955949 4 90 1.0 1.0 1.0 2.0 101 chr3L 3955848 3` UTR CG12605 - chr3L 3955898 3` UTR CG12605 - chr3L 3955949 3` UTR CG12605 - chr3L_4_3955001 chr3L_3955001 RAL-59 592 chr3L 4015736 4015766 chr3L 4015816 4015849 5 82 1.5 0.0 0.8 2.8 113 chr3L 4015736 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-59 593 chr3L 4132953 4132974 chr3L 4133051 4133072 4 98 1.0 0.0 0.5 2.7 119 chr3L 4132953 intron ens - chr3L 4133012 intron ens - chr3L 4133072 intron ens - chr3L_4_4130001 chr3L_4130001 RAL-59 594 chr3L 4170153 4170158 chr3L 4170231 4170236 5 78 0.0 2.0 1.0 2.5 83 chr3L 4170153 intergenic Ero1L + chr3L 4170194 intergenic Ero1L + chr3L 4170236 intergenic Ero1L + chr3L_5_4170001 chr3L_4170001 RAL-59 595 chr3L 4209835 4209851 chr3L 4209911 4209929 4 78 3.5 4.5 4.0 0.8 94 chr3L 4209835 intron CG43367 + chr3L 4209882 intron CG43367 + chr3L 4209929 intron CG43367 + chr3L_4_4205001 chr3L_4205001 RAL-59 596 chr3L 4270943 4270981 chr3L 4271022 4271060 13 74 0.5 5.0 2.8 3.4 117 chr3L 4270943 intron CG1273 + chr3L 4271002 intron CG1273 + chr3L 4271060 intron CG1273 + chr3L_13_4270001 chr3L_4270001 RAL-59 597 chr3L 4342409 4342439 chr3L 4342488 4342518 10 76 4.0 3.5 3.8 2.1 109 chr3L 4342409 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342518 intron Cip4 - chr3L_10_4340001 chr3L_4340001 RAL-59 598 chr3L 4491884 4491911 chr3L 4491968 4491995 11 83 2.0 3.0 2.5 3.1 111 chr3L 4491884 intergenic not near genes chr3L 4491940 intergenic not near genes chr3L 4491995 intergenic not near genes chr3L_11_4490001 chr3L_4490001 RAL-59 599 chr3L 4563582 4563616 chr3L 4563673 4563697 8 90 2.5 3.5 3.0 2.0 115 chr3L 4563582 intron CG42540 + chr3L 4563640 intron CG42540 + chr3L 4563697 intron CG42540 + chr3L_8_4560001 chr3L_4560001 RAL-59 600 chr3L 4652573 4652600 chr3L 4652656 4652683 9 83 3.5 2.5 3.0 2.2 110 chr3L 4652573 intron axo - chr3L 4652628 intron axo - chr3L 4652683 intron axo - chr3L_9_4650001 chr3L_4650001 RAL-59 601 chr3L 4784965 4784993 chr3L 4785174 4785202 6 209 0.0 2.5 1.2 2.7 237 chr3L 4784965 intron RhoGEF64C + chr3L 4785084 intron RhoGEF64C + chr3L 4785202 intron RhoGEF64C + chr3L_6_4785001 chr3L_4785001 RAL-59 602 chr3L 4846581 4846603 chr3L 4846677 4846699 5 93 4.0 2.5 3.2 1.2 118 chr3L 4846581 intergenic not near genes chr3L 4846640 intergenic not near genes chr3L 4846699 intergenic not near genes chr3L_5_4845001 chr3L_4845001 RAL-59 603 chr3L 4858303 4858335 chr3L 4858393 4858425 14 88 3.5 6.5 5.0 2.3 122 chr3L 4858303 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_14_4855001 chr3L_4855001 RAL-59 604 chr3L 5104487 5104498 chr3L 5124621 5124632 4 20134 1.0 4.0 2.5 1.1 20145 chr3L 5104487 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124632 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-59 605 chr3L 5212239 5212269 chr3L 5212321 5212352 18 82 2.0 1.5 1.8 6.4 113 chr3L 5212239 intron shep - chr3L 5212296 intron shep - chr3L 5212352 intron shep - chr3L_18_5210001 chr3L_5210001 RAL-59 606 chr3L 5256703 5256708 chr3L 5256787 5256794 4 86 7.0 1.5 4.2 0.8 91 chr3L 5256703 intron shep - chr3L 5256748 intron shep - chr3L 5256794 intron shep - chr3L_4_5255001 chr3L_5255001 RAL-59 607 chr3L 5315214 5315246 chr3L 5315639 5315671 4 424 2.0 5.0 3.5 0.9 457 chr3L 5315214 intergenic not near genes chr3L 5315442 intergenic not near genes chr3L 5315671 intergenic not near genes chr3L_4_5315001 chr3L_5315001 RAL-59 608 chr3L 5415286 5415307 chr3L 5415379 5415400 4 93 1.5 3.5 2.5 1.1 114 chr3L 5415286 intergenic not near genes chr3L 5415343 intergenic not near genes chr3L 5415400 intergenic not near genes chr3L_4_5415001 chr3L_5415001 RAL-59 609 chr3L 5521991 5521999 chr3L 5522229 5522237 6 238 1.0 6.0 3.5 1.3 246 chr3L 5521991 intron Lkr - chr3L 5522114 intron Lkr - chr3L 5522237 intron Lkr - chr3L_6_5520001 chr3L_5520001 RAL-59 610 chr3L 5788706 5788742 chr3L 5788787 5788821 9 80 1.5 4.0 2.8 2.4 115 chr3L 5788706 intergenic not near genes chr3L 5788764 intergenic not near genes chr3L 5788821 intergenic not near genes chr3L_9_5785001 chr3L_5785001 RAL-59 611 chr3L 5826149 5826164 chr3L 5826233 5826248 8 83 3.0 7.0 5.0 1.3 99 chr3L 5826149 intron vn - chr3L 5826198 intron vn - chr3L 5826248 intron vn - chr3L_8_5825001 chr3L_5825001 RAL-59 612 chr3L 5910036 5910061 chr3L 5910277 5910302 pogo 4 241 0.5 1.0 0.8 2.2 266 chr3L 5910036 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-59 613 chr3L 5923503 5923530 chr3L 5923579 5923606 6 76 2.5 3.5 3.0 1.5 103 chr3L 5923503 exon CG32407 + chr3L 5923554 3` UTR CG32407 + chr3L 5923606 intergenic CG32407 +,Vap-33B + chr3L_6_5920001 chr3L_5920001 RAL-59 614 chr3L 5983839 5983864 chr3L 5983960 5983985 4 121 2.5 0.0 1.2 1.8 146 chr3L 5983839 3` UTR CR45439 - chr3L 5983912 intergenic CR45439 -,CR45440 - chr3L 5983985 intergenic CR45439 -,CR45440 - chr3L_4_5980001 chr3L_5980001 RAL-59 615 chr3L 5992593 5992616 chr3L 5992695 5992718 4 102 3.5 1.0 2.2 1.2 125 chr3L 5992593 intergenic not near genes chr3L 5992656 intergenic not near genes chr3L 5992718 intergenic not near genes chr3L_4_5990001 chr3L_5990001 RAL-59 616 chr3L 6049241 6049267 chr3L 6049444 6049468 10 202 8.5 25.0 16.8 0.6 227 chr3L 6049241 intergenic not near genes chr3L 6049354 intergenic not near genes chr3L 6049468 intergenic not near genes chr3L_10_6045001 chr3L_6045001 RAL-59 617 chr3L 6052652 6052664 chr3L 6052737 6052749 6 85 7.5 9.0 8.2 0.7 97 chr3L 6052652 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-59 618 chr3L 6119142 6119164 chr3L 6119219 6119241 6 77 3.5 0.0 1.8 2.1 99 chr3L 6119142 exon Ets65A + chr3L 6119192 intron Ets65A + chr3L 6119241 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-59 619 chr3L 6151649 6151658 chr3L 6151734 6151743 4 85 4.5 1.0 2.8 1.1 94 chr3L 6151649 3` UTR Lcp65Aa + chr3L 6151696 3` UTR Lcp65Aa + chr3L 6151743 3` UTR Lcp65Aa + chr3L_4_6150001 chr3L_6150001 RAL-59 620 chr3L 6220917 6220948 chr3L 6230069 6230100 roo 5 9152 4.5 5.0 4.8 0.9 9183 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-59 621 chr3L 6335009 6335043 chr3L 6335480 6335514 297 5 471 2.5 0.5 1.5 2.0 505 chr3L 6335009 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335514 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-59 622 chr3L 6652080 6652100 chr3L 6652163 6652183 7 83 3.0 2.0 2.5 2.0 103 chr3L 6652080 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652183 intergenic not near genes chr3L_7_6650001 chr3L_6650001 RAL-59 623 chr3L 6887515 6887532 chr3L 6895007 6895024 roo 6 7492 6.0 0.0 3.0 1.5 7509 chr3L 6887515 intergenic not near genes chr3L 6891270 intergenic not near genes chr3L 6895024 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-59 624 chr3L 6990721 6990747 chr3L 6990801 6990827 8 78 2.0 3.0 2.5 2.3 106 chr3L 6990721 5` UTR bin + chr3L 6990774 5` UTR bin + chr3L 6990827 5` UTR bin + chr3L_8_6990001 chr3L_6990001 RAL-59 625 chr3L 7091531 7091559 chr3L 7091604 7091635 10 75 4.0 2.0 3.0 2.5 104 chr3L 7091531 intergenic not near genes chr3L 7091583 intergenic not near genes chr3L 7091635 intergenic not near genes chr3L_10_7090001 chr3L_7090001 RAL-59 626 chr3L 7276155 7276181 chr3L 7276237 7276263 4 82 1.5 1.0 1.2 1.8 108 chr3L 7276155 intron unc-13-4A - chr3L 7276209 intron unc-13-4A - chr3L 7276263 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-59 627 chr3L 7290769 7290802 chr3L 7290855 7290888 7 86 2.5 0.5 1.5 2.8 119 chr3L 7290769 intron unc-13-4A - chr3L 7290828 intron unc-13-4A - chr3L 7290888 intron unc-13-4A - chr3L_7_7290001 chr3L_7290001 RAL-59 628 chr3L 7377315 7377349 chr3L 7380420 7380454 297 4 3105 2.0 1.5 1.8 1.4 3139 chr3L 7377315 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380454 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-59 629 chr3L 7576211 7576245 chr3L 7576299 7576333 8 86 0.0 1.0 0.5 5.3 122 chr3L 7576211 intergenic not near genes chr3L 7576272 intergenic not near genes chr3L 7576333 intergenic not near genes chr3L_8_7575001 chr3L_7575001 RAL-59 630 chr3L 7581625 7581627 chr3L 7581706 7581708 4 82 11.5 3.5 7.5 0.5 83 chr3L 7581625 intergenic not near genes chr3L 7581666 intergenic not near genes chr3L 7581708 intergenic not near genes chr3L_4_7580001 chr3L_7580001 RAL-59 631 chr3L 7581631 7581651 chr3L 7581705 7581735 7 81 6.5 3.5 5.0 1.2 104 chr3L 7581631 intergenic not near genes chr3L 7581683 intergenic not near genes chr3L 7581735 intergenic not near genes chr3L_7_7580001 chr3L_7580001 RAL-59 632 chr3L 7591146 7591176 chr3L 7591235 7591265 6 86 3.0 4.0 3.5 1.3 119 chr3L 7591146 intergenic CG7716 - chr3L 7591206 intergenic CG7716 - chr3L 7591265 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-59 633 chr3L 7617695 7617704 chr3L 7617804 7617813 6 109 2.5 0.0 1.2 2.7 118 chr3L 7617695 intron CG33275 + chr3L 7617754 intron CG33275 + chr3L 7617813 intron CG33275 + chr3L_6_7615001 chr3L_7615001 RAL-59 634 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 8.0 21.0 14.5 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-59 635 chr3L 7886518 7886545 chr3L 7889036 7889063 Stalker4 7 2518 2.0 0.5 1.2 3.2 2545 chr3L 7886518 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-59 636 chr3L 7990855 7990881 chr3L 7990945 7990971 4 90 0.0 1.0 0.5 2.7 116 chr3L 7990855 intron nmo + chr3L 7990913 intron nmo + chr3L 7990971 intron nmo + chr3L_4_7990001 chr3L_7990001 RAL-59 637 chr3L 7994267 7994299 chr3L 7994387 7994419 5 120 0.0 2.0 1.0 2.5 152 chr3L 7994267 intron nmo + chr3L 7994343 intron nmo + chr3L 7994419 intron nmo + chr3L_5_7990001 chr3L_7990001 RAL-59 638 chr3L 8481782 8481790 chr3L 8490941 8490948 roo 4 9158 8.5 6.0 7.2 0.5 9166 chr3L 8481782 intron CG43163 - chr3L 8486365 intron CG43163 - chr3L 8490948 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-59 639 chr3L 8481794 8481806 chr3L 8490934 8490965 roo 4 9154 4.5 5.0 4.8 0.7 9171 chr3L 8481794 intron CG43163 - chr3L 8486380 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-59 640 chr3L 8498306 8498326 chr3L 8505773 8505793 blood 5 7467 0.5 2.5 1.5 2.0 7487 chr3L 8498306 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-59 641 chr3L 8577300 8577323 chr3L 8577402 8577419 7 103 5.5 7.0 6.2 1.0 119 chr3L 8577300 5` UTR CG43078 + chr3L 8577360 5` UTR CG43078 + chr3L 8577419 5` UTR CG43078 + chr3L_7_8575001 chr3L_8575001 RAL-59 642 chr3L 8682611 8682646 chr3L 8682698 8682733 7 87 1.0 1.5 1.2 3.2 122 chr3L 8682611 intergenic not near genes chr3L 8682672 intergenic not near genes chr3L 8682733 intergenic not near genes chr3L_7_8680001 chr3L_8680001 RAL-59 643 chr3L 8791279 8791288 chr3L 8796699 8796708 I-element 5 5420 6.5 0.0 3.2 1.2 5429 chr3L 8791279 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796708 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-59 644 chr3L 8830751 8830775 chr3L 8830852 8830876 11 101 8.0 4.0 6.0 1.6 125 chr3L 8830751 intron dally + chr3L 8830814 intron dally + chr3L 8830876 intron dally + chr3L_11_8830001 chr3L_8830001 RAL-59 645 chr3L 8853362 8853384 chr3L 8853442 8853465 6 80 3.5 3.0 3.2 1.4 103 chr3L 8853362 intron dally + chr3L 8853414 intron dally + chr3L 8853465 intron dally + chr3L_6_8850001 chr3L_8850001 RAL-59 646 chr3L 8884407 8884426 chr3L 8884606 8884625 8 199 1.0 0.0 0.5 5.3 218 chr3L 8884407 intron dally + chr3L 8884516 intron dally + chr3L 8884625 intron dally + chr3L_8_8880001 chr3L_8880001 RAL-59 647 chr3L 9011141 9011156 chr3L 9011228 9011243 4 87 0.0 0.5 0.2 3.3 102 chr3L 9011141 intergenic not near genes chr3L 9011192 intergenic not near genes chr3L 9011243 intergenic not near genes chr3L_4_9010001 chr3L_9010001 RAL-59 648 chr3L 9076927 9076952 chr3L 9084487 9084511 412 9 7560 6.0 3.0 4.5 1.6 7584 chr3L 9076927 exon Tequila + chr3L 9080719 intron Tequila + chr3L 9084511 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-59 649 chr3L 9130559 9130579 chr3L 9134317 9134340 412 4 3760 3.5 3.5 3.5 0.9 3781 chr3L 9130559 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-59 650 chr3L 9219255 9219277 chr3L 9219921 9219934 jockey 13 668 4.0 3.5 3.8 2.7 679 chr3L 9219255 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219934 intergenic not near genes chr3L_13_9215001 chr3L_9215001 RAL-59 651 chr3L 9221351 9221382 chr3L 9221440 9221471 7 89 3.5 4.0 3.8 1.5 120 chr3L 9221351 intergenic not near genes chr3L 9221411 intergenic not near genes chr3L 9221471 intergenic not near genes chr3L_7_9220001 chr3L_9220001 RAL-59 652 chr3L 9256653 9256666 chr3L 9256740 9256755 5 88 2.0 3.5 2.8 1.3 102 chr3L 9256653 intron GluRIB + chr3L 9256704 intron GluRIB + chr3L 9256755 intron GluRIB + chr3L_5_9255001 chr3L_9255001 RAL-59 653 chr3L 9270615 9270649 chr3L 9278370 9278393 roo 5 7753 0.5 3.0 1.8 1.8 7778 chr3L 9270615 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278393 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-59 654 chr3L 9283456 9283484 chr3L 9283549 9283583 8 98 1.5 3.5 2.5 2.3 127 chr3L 9283456 intron GluRIB + chr3L 9283520 intron GluRIB + chr3L 9283583 intron GluRIB + chr3L_8_9280001 chr3L_9280001 RAL-59 655 chr3L 9421526 9421536 chr3L 9421614 9421625 5 89 5.0 6.0 5.5 0.8 99 chr3L 9421526 intron CG3967 - chr3L 9421576 intron CG3967 - chr3L 9421625 intron CG3967 - chr3L_5_9420001 chr3L_9420001 RAL-59 656 chr3L 9421539 9421556 chr3L 9421613 9421619 8 80 2.0 6.0 4.0 1.6 80 chr3L 9421539 intron CG3967 - chr3L 9421579 intron CG3967 - chr3L 9421619 intron CG3967 - chr3L_8_9420001 chr3L_9420001 RAL-59 657 chr3L 9533762 9533786 chr3L 9541321 9541326 412 5 7553 3.0 3.5 3.2 1.2 7564 chr3L 9533762 intergenic not near genes chr3L 9537544 intergenic not near genes chr3L 9541326 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-59 658 chr3L 9689514 9689541 chr3L 9689594 9689621 8 79 5.0 2.5 3.8 1.7 107 chr3L 9689514 intron CG6767 - chr3L 9689568 intron CG6767 - chr3L 9689621 intron CG6767 - chr3L_8_9685001 chr3L_9685001 RAL-59 659 chr3L 9743990 9744019 chr3L 9744088 9744116 14 96 4.0 4.5 4.2 2.7 126 chr3L 9743990 intron,intron CG42268 -,CR44348 + chr3L 9744053 intron,5` UTR CG42268 -,CR44348 + chr3L 9744116 intron,5` UTR CG42268 -,CR44348 + chr3L_14_9740001 chr3L_9740001 RAL-59 660 chr3L 9824151 9824172 chr3L 9824230 9824250 5 79 2.0 0.0 1.0 2.5 99 chr3L 9824151 intron CG43897 + chr3L 9824200 intron CG43897 + chr3L 9824250 intron CG43897 + chr3L_5_9820001 chr3L_9820001 RAL-59 661 chr3L 9848518 9848532 chr3L 9848594 9848608 5 76 3.5 0.0 1.8 1.8 90 chr3L 9848518 intron RasGAP1 - chr3L 9848563 intron RasGAP1 - chr3L 9848608 intron RasGAP1 - chr3L_5_9845001 chr3L_9845001 RAL-59 662 chr3L 9918879 9918903 chr3L 9918974 9918998 8 95 3.0 2.0 2.5 2.3 119 chr3L 9918879 intron CG34356 + chr3L 9918938 intron CG34356 + chr3L 9918998 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-59 663 chr3L 9929671 9929681 chr3L 9938452 9938462 roo 4 8781 2.5 1.0 1.8 1.4 8791 chr3L 9929671 intron CG34356 + chr3L 9934066 intron CG34356 + chr3L 9938462 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-59 664 chr3L 9979561 9979586 chr3L 9981465 9981490 9 1904 3.5 1.5 2.5 2.6 1929 chr3L 9979561 intron dpr6 + chr3L 9980526 intron dpr6 + chr3L 9981490 intron dpr6 + chr3L_9_9980001 chr3L_9980001 RAL-59 665 chr3L 10214732 10214828 chr3L 10214819 10214930 4 98 0.0 0.0 0.0 4.0 198 chr3L 10214732 intergenic not near genes chr3L 10214831 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_4_10210001 chr3L_10210001 RAL-59 666 chr3L 10308743 10308764 chr3L 10308820 10308841 7 77 4.0 3.0 3.5 1.6 98 chr3L 10308743 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308841 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-59 667 chr3L 10407750 10407772 chr3L 10408077 10408099 6 327 2.0 6.5 4.2 1.2 349 chr3L 10407750 intergenic not near genes chr3L 10407924 intergenic not near genes chr3L 10408099 intergenic not near genes chr3L_6_10405001 chr3L_10405001 RAL-59 668 chr3L 10414946 10414971 chr3L 10417318 10417343 Doc 6 2372 0.5 1.0 0.8 3.3 2397 chr3L 10414946 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417343 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-59 669 chr3L 10484569 10484595 chr3L 10484720 10484746 7 151 0.5 4.5 2.5 2.0 177 chr3L 10484569 intron A2bp1 + chr3L 10484658 intron A2bp1 + chr3L 10484746 intron A2bp1 + chr3L_7_10480001 chr3L_10480001 RAL-59 670 chr3L 10600456 10600467 chr3L 10600538 10600549 5 82 2.5 1.5 2.0 1.7 93 chr3L 10600456 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-59 671 chr3L 10658076 10658182 chr3L 10658153 10658309 5 97 0.0 0.0 0.0 5.0 233 chr3L 10658076 intron CG32066 - chr3L 10658192 intron CG32066 - chr3L 10658309 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-59 672 chr3L 10748738 10748770 chr3L 10748829 10748862 10 92 1.0 3.0 2.0 3.3 124 chr3L 10748738 intergenic not near genes chr3L 10748800 intergenic not near genes chr3L 10748862 intergenic not near genes chr3L_10_10745001 chr3L_10745001 RAL-59 673 chr3L 10762829 10762852 chr3L 10762913 10762935 13 80 5.0 3.0 4.0 2.6 106 chr3L 10762829 intergenic not near genes chr3L 10762882 intergenic not near genes chr3L 10762935 intergenic not near genes chr3L_13_10760001 chr3L_10760001 RAL-59 674 chr3L 10956456 10956469 chr3L 10956574 10956587 5 118 0.5 5.5 3.0 1.2 131 chr3L 10956456 intergenic not near genes chr3L 10956522 intergenic not near genes chr3L 10956587 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-59 675 chr3L 10971524 10971539 chr3L 10971867 10971884 7 345 1.0 0.5 0.8 3.9 360 chr3L 10971524 intergenic not near genes chr3L 10971704 intergenic not near genes chr3L 10971884 intergenic not near genes chr3L_7_10970001 chr3L_10970001 RAL-59 676 chr3L 11087061 11087090 chr3L 11088849 11088879 S-element 5 1789 1.5 3.0 2.2 1.6 1818 chr3L 11087061 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088879 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-59 677 chr3L 11105295 11105326 chr3L 11107006 11107037 X-element 10 1711 1.0 6.5 3.8 2.1 1742 chr3L 11105295 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107037 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-59 678 chr3L 11135528 11135796 chr3L 11135758 11135881 8 121 0.0 0.0 0.0 8.0 353 chr3L 11135528 intergenic CG14143 + chr3L 11135704 intergenic CG14143 +,CG32082 + chr3L 11135881 intergenic CG32082 +,CG14143 + chr3L_8_11135001 chr3L_11135001 RAL-59 679 chr3L 11277460 11277483 chr3L 11278455 11278477 Rt1a 5 995 1.5 5.0 3.2 1.2 1017 chr3L 11277460 intergenic not near genes chr3L 11277968 intergenic not near genes chr3L 11278477 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-59 680 chr3L 11329690 11329725 chr3L 11332895 11332926 jockey 8 3203 3.0 2.0 2.5 2.3 3236 chr3L 11329690 intergenic not near genes chr3L 11331308 intergenic not near genes chr3L 11332926 intergenic not near genes chr3L_8_11330001 chr3L_11330001 RAL-59 681 chr3L 11340529 11340551 chr3L 11340649 11340649 5 112 1.5 4.0 2.8 1.3 120 chr3L 11340529 intergenic not near genes chr3L 11340589 intergenic not near genes chr3L 11340649 intergenic not near genes chr3L_5_11340001 chr3L_11340001 RAL-59 682 chr3L 11376704 11376732 chr3L 11376791 11376819 4 87 1.5 2.0 1.8 1.4 115 chr3L 11376704 intergenic not near genes chr3L 11376762 intergenic not near genes chr3L 11376819 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-59 683 chr3L 11383972 11383996 chr3L 11384051 11384075 7 75 2.5 4.5 3.5 1.6 103 chr3L 11383972 3` UTR CR42755 - chr3L 11384024 3` UTR CR42755 - chr3L 11384075 3` UTR CR42755 - chr3L_7_11380001 chr3L_11380001 RAL-59 684 chr3L 11564789 11564813 chr3L 11572414 11572438 412 7 7625 1.0 5.0 3.0 1.8 7649 chr3L 11564789 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-59 685 chr3L 11744011 11744022 chr3L 11744119 11744130 5 108 7.0 0.0 3.5 1.1 119 chr3L 11744011 exon CG6024 - chr3L 11744070 intron CG6024 - chr3L 11744130 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-59 686 chr3L 802566 802566 chr3L 11777678 11777678 5 10975112 13.0 21.0 17.0 0.3 10975112 chr3L 802566 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_6290001 chr3L_6290001 RAL-59 687 chr3L 11864552 11864582 chr3L 11865847 11865877 pogo 7 1295 2.5 1.5 2.0 2.3 1325 chr3L 11864552 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_7_11865001 chr3L_11865001 RAL-59 688 chr3L 12013911 12013938 chr3L 12014002 12014027 9 90 2.5 0.0 1.2 4.1 116 chr3L 12013911 intron rols - chr3L 12013969 intron rols - chr3L 12014027 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-59 689 chr3L 12052707 12052735 chr3L 12052796 12052824 6 89 2.5 3.0 2.8 1.6 117 chr3L 12052707 intron rols - chr3L 12052766 intron rols - chr3L 12052824 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-59 690 chr3L 12089084 12089102 chr3L 12089164 12089182 5 80 2.0 1.5 1.8 1.8 98 chr3L 12089084 3` UTR CG17154 + chr3L 12089133 3` UTR CG17154 + chr3L 12089182 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-59 691 chr3L 12158495 12158524 chr3L 12158716 12158743 6 220 11.5 30.5 21.0 0.3 248 chr3L 12158495 intron CG9760 - chr3L 12158619 intron CG9760 - chr3L 12158743 intron CG9760 - chr3L_6_12155001 chr3L_12155001 RAL-59 692 chr3L 12158786 12158808 chr3L 12160257 12160278 8 1470 59.5 37.5 48.5 0.2 1492 chr3L 12158786 intron CG9760 - chr3L 12159532 exon CG9760 - chr3L 12160278 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-59 693 chr3L 12156431 12156462 chr3L 12160316 12160347 16 3886 12.5 28.5 20.5 0.7 3916 chr3L 12156431 3` UTR Nrx-IV + chr3L 12158389 intron CG9760 - chr3L 12160347 intron CG9760 - chr3L_16_12155001 chr3L_12155001 RAL-59 694 chr3L 12273102 12273134 chr3L 12273407 12273440 4 304 3.0 3.5 3.2 1.0 338 chr3L 12273102 intron CG4300 - chr3L 12273271 intron CG4300 - chr3L 12273440 intron CG4300 - chr3L_4_12270001 chr3L_12270001 RAL-59 695 chr3L 12327134 12327159 chr3L 12327246 12327269 10 113 2.5 4.5 3.5 2.2 135 chr3L 12327134 intergenic not near genes chr3L 12327202 intergenic not near genes chr3L 12327269 intergenic not near genes chr3L_10_12325001 chr3L_12325001 RAL-59 696 chr3L 12476306 12476316 chr3L 12476382 12476392 6 76 2.5 3.5 3.0 1.5 86 chr3L 12476306 intron CG10663 - chr3L 12476349 intron CG10663 - chr3L 12476392 intron CG10663 - chr3L_6_12475001 chr3L_12475001 RAL-59 697 chr3L 12566817 12566841 chr3L 12566922 12566946 8 103 4.0 1.0 2.5 2.3 129 chr3L 12566817 intron sowah - chr3L 12566882 intron sowah - chr3L 12566946 intron sowah - chr3L_8_12565001 chr3L_12565001 RAL-59 698 chr3L 12591633 12591641 chr3L 12591710 12591718 5 77 5.0 5.0 5.0 0.8 85 chr3L 12591633 intron ara + chr3L 12591676 intron ara + chr3L 12591718 intron ara + chr3L_5_12590001 chr3L_12590001 RAL-59 699 chr3L 12867549 12867560 chr3L 12867642 12867643 4 90 1.0 1.0 1.0 2.0 94 chr3L 12867549 intergenic not near genes chr3L 12867596 intergenic not near genes chr3L 12867643 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-59 700 chr3L 12874927 12874958 chr3L 12877219 12877250 jockey 4 2292 2.5 0.0 1.2 1.8 2323 chr3L 12874927 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877250 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-59 701 chr3L 12894803 12894818 chr3L 12894878 12894896 7 75 3.5 7.0 5.2 1.1 93 chr3L 12894803 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-59 702 chr3L 12928170 12928203 chr3L 12928255 12928288 5 85 0.5 2.0 1.2 2.3 118 chr3L 12928170 intergenic not near genes chr3L 12928229 intergenic not near genes chr3L 12928288 intergenic not near genes chr3L_5_12925001 chr3L_12925001 RAL-59 703 chr3L 12957800 12957820 chr3L 12962282 12962302 copia 4 4482 1.5 3.5 2.5 1.1 4502 chr3L 12957800 intergenic not near genes chr3L 12960051 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-59 704 chr3L 12977750 12977776 chr3L 12977853 12977879 5 103 0.0 2.0 1.0 2.5 129 chr3L 12977750 intergenic not near genes chr3L 12977814 intergenic not near genes chr3L 12977879 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-59 705 chr3L 13205240 13205271 chr3L 13205326 13205357 9 86 0.5 1.0 0.8 5.0 117 chr3L 13205240 intergenic not near genes chr3L 13205298 intergenic not near genes chr3L 13205357 intergenic not near genes chr3L_9_13205001 chr3L_13205001 RAL-59 706 chr3L 13320606 13320641 chr3L 13320697 13320732 12 90 2.0 3.0 2.5 3.4 126 chr3L 13320606 intergenic not near genes chr3L 13320669 intergenic not near genes chr3L 13320732 intergenic not near genes chr3L_12_13320001 chr3L_13320001 RAL-59 707 chr3L 13324652 13324688 chr3L 13324748 13324783 10 94 2.5 4.5 3.5 2.2 131 chr3L 13324652 3` UTR CR44558 - chr3L 13324718 3` UTR CR44558 - chr3L 13324783 3` UTR CR44558 - chr3L_10_13320001 chr3L_13320001 RAL-59 708 chr3L 13386293 13386319 chr3L 13386609 13386636 9 315 1.5 4.5 3.0 2.2 343 chr3L 13386293 3` UTR CG10171 - chr3L 13386464 3` UTR CG10171 - chr3L 13386636 3` UTR CG10171 - chr3L_9_13385001 chr3L_13385001 RAL-59 709 chr3L 13422874 13422903 chr3L 13422987 13423012 10 112 0.0 1.0 0.5 6.7 138 chr3L 13422874 intergenic CG33263 - chr3L 13422943 intergenic CG33263 - chr3L 13423012 intergenic CG33263 - chr3L_10_13420001 chr3L_13420001 RAL-59 710 chr3L 13525159 13525189 chr3L 13532955 13532985 roo 4 7796 1.5 4.0 2.8 1.1 7826 chr3L 13525159 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-59 711 chr3L 13602599 13602625 chr3L 13602697 13602723 5 96 1.0 1.0 1.0 2.5 124 chr3L 13602599 intron bru-3 - chr3L 13602661 intron bru-3 - chr3L 13602723 intron bru-3 - chr3L_5_13600001 chr3L_13600001 RAL-59 712 chr3L 14191118 14191135 chr3L 14191194 14191211 4 76 2.5 2.5 2.5 1.1 93 chr3L 14191118 5` UTR nuf + chr3L 14191164 5` UTR nuf + chr3L 14191211 5` UTR nuf + chr3L_4_14190001 chr3L_14190001 RAL-59 713 chr3L 14245569 14245581 chr3L 14245663 14245674 1360 5 94 5.5 2.5 4.0 1.0 105 chr3L 14245569 3` UTR CR44561 - chr3L 14245622 3` UTR CR44561 - chr3L 14245674 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-59 714 chr3L 14282589 14282607 chr3L 14282669 14282687 6 80 4.5 6.5 5.5 0.9 98 chr3L 14282589 intron fz + chr3L 14282638 intron fz + chr3L 14282687 intron fz + chr3L_6_14280001 chr3L_14280001 RAL-59 715 chr3L 14295986 14296012 chr3L 14296470 14296498 roo 7 486 9.0 1.5 5.2 1.1 512 chr3L 14295986 intron fz + chr3L 14296242 intron fz + chr3L 14296498 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-59 716 chr3L 14312028 14312049 chr3L 14316840 14316862 X-element 9 4813 4.0 1.5 2.8 2.4 4834 chr3L 14312028 exon fz + chr3L 14314445 intron fz + chr3L 14316862 intron fz + chr3L_9_14310001 chr3L_14310001 RAL-59 717 chr3L 14359558 14359577 chr3L 14359637 14359657 4 80 2.0 2.0 2.0 1.3 99 chr3L 14359558 intron fz + chr3L 14359608 intron fz + chr3L 14359657 intron fz + chr3L_4_14355001 chr3L_14355001 RAL-59 718 chr3L 14411868 14411895 chr3L 14411947 14411974 8 79 1.5 1.0 1.2 3.6 106 chr3L 14411868 intron CG3919 + chr3L 14411921 intron CG3919 + chr3L 14411974 intron CG3919 + chr3L_8_14410001 chr3L_14410001 RAL-59 719 chr3L 14468448 14468469 chr3L 14473654 14473675 copia 5 5206 2.5 0.5 1.5 2.0 5227 chr3L 14468448 intron bbg - chr3L 14471062 intron bbg - chr3L 14473675 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-59 720 chr3L 14721189 14721209 chr3L 14723032 14723052 Rt1c 9 1843 9.5 5.0 7.2 1.1 1863 chr3L 14721189 intron ome + chr3L 14722120 intron ome + chr3L 14723052 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-59 721 chr3L 14725613 14725624 chr3L 14728607 14728618 Doc 5 2994 0.5 2.5 1.5 2.0 3005 chr3L 14725613 intron ome + chr3L 14727116 intron ome + chr3L 14728618 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-59 722 chr3L 15085048 15085071 chr3L 15086214 15086237 1360 6 1166 1.5 1.0 1.2 2.7 1189 chr3L 15085048 intron cp309 - chr3L 15085642 intron cp309 - chr3L 15086237 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-59 723 chr3L 15163626 15163635 chr3L 15163716 15163726 5 90 4.5 4.0 4.2 1.0 100 chr3L 15163626 5` UTR CG7011 - chr3L 15163676 intergenic CG7011 - chr3L 15163726 intergenic CG7011 - chr3L_5_15160001 chr3L_15160001 RAL-59 724 chr3L 15231388 15231417 chr3L 15231481 15231508 17 92 0.5 1.5 1.0 8.5 120 chr3L 15231388 intergenic not near genes chr3L 15231448 intergenic not near genes chr3L 15231508 intergenic not near genes chr3L_17_15230001 chr3L_15230001 RAL-59 725 chr3L 15423761 15423772 chr3L 15426605 15426616 opus 4 2844 1.5 0.0 0.8 2.2 2855 chr3L 15423761 intergenic not near genes chr3L 15425188 intergenic not near genes chr3L 15426616 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-59 726 chr3L 15466041 15466133 chr3L 15466122 15466229 5 90 0.0 0.0 0.0 5.0 188 chr3L 15466041 intergenic not near genes chr3L 15466135 intergenic not near genes chr3L 15466229 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-59 727 chr3L 15482414 15482436 chr3L 15482506 15482528 4 92 4.0 2.0 3.0 1.0 114 chr3L 15482414 intergenic not near genes chr3L 15482471 intergenic not near genes chr3L 15482528 intergenic not near genes chr3L_4_15480001 chr3L_15480001 RAL-59 728 chr3L 15741301 15741302 chr3L 15741360 15741384 5 71 2.0 0.0 1.0 2.5 83 chr3L 15741301 intergenic not near genes chr3L 15741342 intergenic not near genes chr3L 15741384 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-59 729 chr3L 15756884 15756912 chr3L 15756967 15756994 10 82 2.5 0.0 1.2 4.5 110 chr3L 15756884 intergenic not near genes chr3L 15756939 intergenic not near genes chr3L 15756994 intergenic not near genes chr3L_10_15755001 chr3L_15755001 RAL-59 730 chr3L 15899231 15899258 chr3L 15899796 15899825 jockey 7 566 2.0 3.5 2.8 1.8 594 chr3L 15899231 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899825 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-59 731 chr3L 16175517 16175535 chr3L 16175626 16175647 6 112 12.5 6.0 9.2 0.6 130 chr3L 16175517 intergenic not near genes chr3L 16175582 intergenic not near genes chr3L 16175647 intergenic not near genes chr3L_6_16175001 chr3L_16175001 RAL-59 732 chr3L 16322826 16322853 chr3L 16322913 16322943 10 90 4.5 2.0 3.2 2.4 117 chr3L 16322826 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322943 intergenic not near genes chr3L_10_16320001 chr3L_16320001 RAL-59 733 chr3L 16360883 16360916 chr3L 16360961 16360994 23 77 5.5 2.5 4.0 4.6 111 chr3L 16360883 intron CG45057 - chr3L 16360938 intron CG45057 - chr3L 16360994 intron CG45057 - chr3L_23_16360001 chr3L_16360001 RAL-59 734 chr3L 16503626 16503656 chr3L 16503703 16503733 5 77 2.5 2.5 2.5 1.4 107 chr3L 16503626 intron CG43373 - chr3L 16503680 intron CG43373 - chr3L 16503733 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-59 735 chr3L 16506666 16506695 chr3L 16506859 16506887 6 193 1.0 3.0 2.0 2.0 221 chr3L 16506666 intron CG43373 - chr3L 16506776 intron CG43373 - chr3L 16506887 intron CG43373 - chr3L_6_16505001 chr3L_16505001 RAL-59 736 chr3L 16610683 16610713 chr3L 16610768 16610798 4 85 0.0 1.0 0.5 2.7 115 chr3L 16610683 3` UTR Su(P) - chr3L 16610740 exon Su(P) - chr3L 16610798 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-59 737 chr3L 16786979 16786985 chr3L 16787055 16787061 4 76 0.0 1.5 0.8 2.2 82 chr3L 16786979 intergenic Int6 - chr3L 16787020 intergenic Int6 - chr3L 16787061 intergenic Int6 - chr3L_4_16785001 chr3L_16785001 RAL-59 738 chr3L 16870874 16870895 chr3L 16870965 16870986 5 91 0.5 1.0 0.8 2.8 112 chr3L 16870874 intron Lmpt + chr3L 16870930 intron Lmpt + chr3L 16870986 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-59 739 chr3L 16945730 16945761 chr3L 16954883 16954912 roo 13 9149 8.5 0.0 4.2 2.5 9182 chr3L 16945730 exon Obp73a + chr3L 16950321 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-59 740 chr3L 16959399 16959420 chr3L 16959577 16959598 8 178 4.5 3.0 3.8 1.7 199 chr3L 16959399 exon Nc73EF + chr3L 16959498 intron Nc73EF + chr3L 16959598 intron Nc73EF + chr3L_8_16955001 chr3L_16955001 RAL-59 741 chr3L 16982394 16982424 chr3L 16982480 16982510 13 85 5.5 2.5 4.0 2.6 116 chr3L 16982394 exon Exn + chr3L 16982452 exon Exn + chr3L 16982510 exon Exn + chr3L_13_16980001 chr3L_16980001 RAL-59 742 chr3L 17120653 17120677 chr3L 17120729 17120753 5 76 1.0 3.5 2.2 1.6 100 chr3L 17120653 intron Rbp6 - chr3L 17120703 intron Rbp6 - chr3L 17120753 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-59 743 chr3L 17510732 17510765 chr3L 17510816 17510849 14 84 4.5 1.0 2.8 3.7 117 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_14_17510001 chr3L_17510001 RAL-59 744 chr3L 17516980 17517011 chr3L 17524538 17524569 412 6 7558 2.5 3.0 2.8 1.6 7589 chr3L 17516980 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524569 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-59 745 chr3L 17537777 17537797 chr3L 17537856 17537875 5 79 1.0 0.0 0.5 3.3 98 chr3L 17537777 intron Nedd4 + chr3L 17537826 intron Nedd4 + chr3L 17537875 intron Nedd4 + chr3L_5_17535001 chr3L_17535001 RAL-59 746 chr3L 17790624 17790634 chr3L 17790889 17790899 4 265 4.0 1.0 2.5 1.1 275 chr3L 17790624 intergenic CG42815 - chr3L 17790762 intergenic CG42815 - chr3L 17790899 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-59 747 chr3L 17947336 17947364 chr3L 17947530 17947556 16 193 4.0 6.0 5.0 2.7 220 chr3L 17947336 3` UTR CR45393 - chr3L 17947446 3` UTR CR45393 - chr3L 17947556 3` UTR CR45393 - chr3L_16_17945001 chr3L_17945001 RAL-59 748 chr3L 18221102 18221123 chr3L 18221183 18221204 6 81 0.0 0.0 0.0 6.0 102 chr3L 18221102 intergenic not near genes chr3L 18221153 intergenic not near genes chr3L 18221204 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-59 749 chr3L 18223168 18223188 chr3L 18223251 18223262 7 81 2.0 0.0 1.0 3.5 94 chr3L 18223168 intergenic not near genes chr3L 18223215 intergenic not near genes chr3L 18223262 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-59 750 chr3L 18248953 18248980 chr3L 18249051 18249078 10 98 0.5 3.5 2.0 3.3 125 chr3L 18248953 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249078 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-59 751 chr3L 9013689 9013695 chr3L 18417066 18417066 8 9403374 24.5 20.0 22.2 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-59 752 chr3L 18464486 18464515 chr3L 18464572 18464573 10 83 2.5 5.0 3.8 2.1 87 chr3L 18464486 intergenic not near genes chr3L 18464530 intergenic not near genes chr3L 18464573 intergenic not near genes chr3L_10_18460001 chr3L_18460001 RAL-59 753 chr3L 18473175 18473186 chr3L 18473459 18473470 4 284 1.5 1.5 1.5 1.6 295 chr3L 18473175 intergenic not near genes chr3L 18473322 intergenic not near genes chr3L 18473470 intergenic not near genes chr3L_4_18470001 chr3L_18470001 RAL-59 754 chr3L 18606750 18606782 chr3L 18606948 18606980 6 194 0.5 1.0 0.8 3.3 230 chr3L 18606750 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606865 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606980 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_6_18605001 chr3L_18605001 RAL-59 755 chr3L 18677885 18677918 chr3L 18677980 18678013 10 95 2.0 3.0 2.5 2.9 128 chr3L 18677885 intergenic GNBP1 + chr3L 18677949 intergenic GNBP1 + chr3L 18678013 intergenic GNBP1 + chr3L_10_18675001 chr3L_18675001 RAL-59 756 chr3L 18682635 18682660 chr3L 18682835 18682860 10 200 19.0 13.0 16.0 0.6 225 chr3L 18682635 exon CG32202 + chr3L 18682748 exon CG32202 + chr3L 18682860 3` UTR CG32202 + chr3L_10_18680001 chr3L_18680001 RAL-59 757 chr3L 18772406 18772438 chr3L 18781087 18781118 roo 13 8681 1.0 2.5 1.8 4.6 8712 chr3L 18772406 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_13_18775001 chr3L_18775001 RAL-59 758 chr3L 18918923 18918959 chr3L 18919359 18919387 15 435 3.0 6.0 4.5 2.7 464 chr3L 18918923 exon CG6839 + chr3L 18919155 exon CG6839 + chr3L 18919387 exon CG18223 - chr3L_15_18915001 chr3L_18915001 RAL-59 759 chr3L 18933626 18933660 chr3L 18933720 18933753 4 94 0.0 1.5 0.8 2.2 127 chr3L 18933626 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-59 760 chr3L 19008844 19008872 chr3L 19009181 19009210 jockey 7 338 1.0 4.5 2.8 1.8 366 chr3L 19008844 intron nkd - chr3L 19009027 intron nkd - chr3L 19009210 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-59 761 chr3L 19029462 19029478 chr3L 19029561 19029580 5 100 2.0 8.0 5.0 0.8 118 chr3L 19029462 intron nkd - chr3L 19029521 intron nkd - chr3L 19029580 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-59 762 chr3L 19082036 19082068 chr3L 19082138 19082170 12 102 2.5 2.0 2.2 3.8 134 chr3L 19082036 intron Mkp3 - chr3L 19082103 intron Mkp3 - chr3L 19082170 intron Mkp3 - chr3L_12_19080001 chr3L_19080001 RAL-59 763 chr3L 19115637 19115664 chr3L 19115815 19115824 BS 7 175 7.0 1.5 4.2 1.3 187 chr3L 19115637 intron CG14082 - chr3L 19115730 intron CG14082 - chr3L 19115824 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-59 764 chr3L 19117047 19117056 chr3L 19124493 19124503 mdg1 7 7447 7.5 5.0 6.2 1.0 7456 chr3L 19117047 intron CG14082 - chr3L 19120775 intron CG14082 - chr3L 19124503 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-59 765 chr3L 19117059 19117073 chr3L 19124487 19124520 mdg1 6 7444 5.0 3.5 4.2 1.2 7461 chr3L 19117059 intron CG14082 - chr3L 19120790 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-59 766 chr3L 19182401 19182415 chr3L 19182482 19182496 5 80 0.5 2.5 1.5 2.0 95 chr3L 19182401 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182496 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-59 767 chr3L 19208066 19208089 chr3L 19209431 19209462 Doc 8 1373 3.0 4.0 3.5 1.8 1396 chr3L 19208066 intron fz2 - chr3L 19208764 intron fz2 - chr3L 19209462 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-59 768 chr3L 19295172 19295197 chr3L 19295512 19295541 8 344 2.5 1.5 2.0 2.7 369 chr3L 19295172 intron fal + chr3L 19295356 intron fal + chr3L 19295541 intron fal + chr3L_8_19295001 chr3L_19295001 RAL-59 769 chr3L 19315251 19315279 chr3L 19315435 19315463 6 184 1.0 0.5 0.8 3.3 212 chr3L 19315251 intron pip - chr3L 19315357 intron pip - chr3L 19315463 intron pip - chr3L_6_19315001 chr3L_19315001 RAL-59 770 chr3L 19443155 19443169 chr3L 19443238 19443252 4 83 5.5 4.5 5.0 0.7 97 chr3L 19443155 intron CG33062 - chr3L 19443204 intron CG33062 - chr3L 19443252 intron CG33062 - chr3L_4_19440001 chr3L_19440001 RAL-59 771 chr3L 19519425 19519446 chr3L 19519509 19519530 4 84 0.5 3.0 1.8 1.4 105 chr3L 19519425 intergenic Cpr76Bb + chr3L 19519478 intergenic Cpr76Bb + chr3L 19519530 intergenic Cpr76Bb + chr3L_4_19515001 chr3L_19515001 RAL-59 772 chr3L 19861820 19861852 chr3L 19863608 19863640 S-element 5 1788 1.5 1.5 1.5 2.0 1820 chr3L 19861820 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-59 773 chr3L 19933540 19933556 chr3L 19934362 19934378 6 822 1.5 1.5 1.5 2.4 838 chr3L 19933540 intergenic CR45678 + chr3L 19933959 5` UTR CR45678 + chr3L 19934378 intergenic CR45678 + chr3L_6_19930001 chr3L_19930001 RAL-59 774 chr3L 19962951 19962982 chr3L 19963025 19963060 10 76 0.5 0.5 0.5 6.7 109 chr3L 19962951 intron Ac76E + chr3L 19963006 intron Ac76E + chr3L 19963060 intron Ac76E + chr3L_10_19960001 chr3L_19960001 RAL-59 775 chr3L 20077003 20077031 chr3L 20077104 20077132 8 100 4.0 4.0 4.0 1.6 129 chr3L 20077003 intron sNPF-R - chr3L 20077068 intron sNPF-R - chr3L 20077132 intron sNPF-R - chr3L_8_20075001 chr3L_20075001 RAL-59 776 chr3L 20096263 20096276 chr3L 20096371 20096384 4 108 1.0 1.0 1.0 2.0 121 chr3L 20096263 intergenic not near genes chr3L 20096324 intergenic not near genes chr3L 20096384 intergenic not near genes chr3L_4_20095001 chr3L_20095001 RAL-59 777 chr3L 20143083 20143112 chr3L 20143163 20143192 7 80 1.0 0.0 0.5 4.7 109 chr3L 20143083 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143192 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-59 778 chr3L 20148282 20148312 chr3L 20148372 20148402 7 90 2.0 1.0 1.5 2.8 120 chr3L 20148282 intergenic not near genes chr3L 20148342 intergenic not near genes chr3L 20148402 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-59 779 chr3L 20156170 20156189 chr3L 20156292 20156311 6 122 7.0 5.5 6.2 0.8 141 chr3L 20156170 intron CG42674 - chr3L 20156240 intron CG42674 - chr3L 20156311 intron CG42674 - chr3L_6_20155001 chr3L_20155001 RAL-59 780 chr3L 20257351 20257359 chr3L 20258471 20258478 pogo 5 1120 0.5 3.0 1.8 1.8 1127 chr3L 20257351 intron rdgC + chr3L 20257914 intron rdgC + chr3L 20258478 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-59 781 chr3L 20283679 20283707 chr3L 20283763 20283791 5 84 1.5 3.0 2.2 1.6 112 chr3L 20283679 intron gogo - chr3L 20283735 intron gogo - chr3L 20283791 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-59 782 chr3L 20345610 20345640 chr3L 20345690 20345721 6 81 1.0 0.5 0.8 3.3 111 chr3L 20345610 intergenic Rbbp5 - chr3L 20345666 intergenic Rbbp5 - chr3L 20345721 intergenic Rbbp5 - chr3L_6_20345001 chr3L_20345001 RAL-59 783 chr3L 20363071 20363078 chr3L 20363378 20363393 5 313 5.0 7.5 6.2 0.7 322 chr3L 20363071 exon Toll-9 - chr3L 20363232 exon Toll-9 - chr3L 20363393 exon Toll-9 - chr3L_5_20360001 chr3L_20360001 RAL-59 784 chr3L 20363079 20363092 chr3L 20363376 20363407 8 311 2.0 7.5 4.8 1.4 328 chr3L 20363079 exon Toll-9 - chr3L 20363243 exon Toll-9 - chr3L 20363407 exon Toll-9 - chr3L_8_20360001 chr3L_20360001 RAL-59 785 chr3L 20386940 20386961 chr3L 20387042 20387063 11 102 2.0 1.0 1.5 4.4 123 chr3L 20386940 intron fbl + chr3L 20387002 intron fbl + chr3L 20387063 intron fbl + chr3L_11_20385001 chr3L_20385001 RAL-59 786 chr3L 20590068 20590096 chr3L 20590606 20590635 412 8 533 2.0 6.0 4.0 1.6 567 chr3L 20590068 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_8_20590001 chr3L_20590001 RAL-59 787 chr3L 20872576 20872595 chr3L 20872690 20872709 5 114 2.0 0.5 1.2 2.3 133 chr3L 20872576 intron CG32432 - chr3L 20872642 intron CG32432 - chr3L 20872709 intron CG32432 - chr3L_5_20870001 chr3L_20870001 RAL-59 788 chr3L 20890496 20890503 chr3L 20890572 20890577 4 75 5.5 2.0 3.8 0.8 81 chr3L 20890496 intergenic not near genes chr3L 20890536 intergenic not near genes chr3L 20890577 intergenic not near genes chr3L_4_20890001 chr3L_20890001 RAL-59 789 chr3L 20890922 20890943 chr3L 20891019 20891048 8 103 1.5 6.5 4.0 1.6 126 chr3L 20890922 intergenic not near genes chr3L 20890985 intergenic not near genes chr3L 20891048 intergenic not near genes chr3L_8_20890001 chr3L_20890001 RAL-59 790 chr3L 20913751 20913782 chr3L 20913833 20913864 12 82 3.5 3.0 3.2 2.9 113 chr3L 20913751 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_12_20910001 chr3L_20910001 RAL-59 791 chr3L 20917098 20917122 chr3L 20917175 20917199 6 77 1.0 3.5 2.2 1.9 101 chr3L 20917098 intergenic not near genes chr3L 20917148 intergenic not near genes chr3L 20917199 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-59 792 chr3L 20979156 20979169 chr3L 20979538 20979551 5 382 4.0 1.0 2.5 1.4 395 chr3L 20979156 intergenic not near genes chr3L 20979354 intergenic not near genes chr3L 20979551 intergenic not near genes chr3L_5_20975001 chr3L_20975001 RAL-59 793 chr3L 20986762 20986785 chr3L 20986835 20986863 10 77 3.0 2.5 2.8 2.6 101 chr3L 20986762 intergenic not near genes chr3L 20986812 intergenic not near genes chr3L 20986863 intergenic not near genes chr3L_10_20985001 chr3L_20985001 RAL-59 794 chr3L 21014914 21014948 chr3L 21023395 21023402 Tirant 16 8475 2.0 5.5 3.8 3.3 8488 chr3L 21014914 intron skd - chr3L 21019158 intron skd - chr3L 21023402 intron skd - chr3L_16_21015001 chr3L_21015001 RAL-59 795 chr3L 21110178 21110212 chr3L 21110432 21110466 4 254 3.5 3.5 3.5 0.9 288 chr3L 21110178 intron ko - chr3L 21110322 intron ko - chr3L 21110466 intron ko - chr3L_4_21110001 chr3L_21110001 RAL-59 796 chr3L 21151862 21151883 chr3L 21156946 21156967 flea 5 5084 1.5 0.0 0.8 2.8 5105 chr3L 21151862 intron Ac78C - chr3L 21154414 intron Ac78C - chr3L 21156967 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-59 797 chr3L 21158598 21158617 chr3L 21158674 21158693 8 76 2.0 2.0 2.0 2.7 95 chr3L 21158598 intron Ac78C - chr3L 21158646 intron Ac78C - chr3L 21158693 intron Ac78C - chr3L_8_21155001 chr3L_21155001 RAL-59 798 chr3L 21172839 21172864 chr3L 21172938 21172967 4 102 0.0 1.0 0.5 2.7 128 chr3L 21172839 intergenic chb +,asparagine-synthetase + chr3L 21172903 5` UTR chb + chr3L 21172967 5` UTR chb + chr3L_4_21170001 chr3L_21170001 RAL-59 799 chr3L 21186050 21186078 chr3L 21186126 21186154 10 75 10.0 5.0 7.5 1.2 104 chr3L 21186050 intron CG42337 - chr3L 21186102 intron CG42337 - chr3L 21186154 intron CG42337 - chr3L_10_21185001 chr3L_21185001 RAL-59 800 chr3L 21243747 21243766 chr3L 21251310 21251325 412 9 7563 3.5 4.5 4.0 1.8 7578 chr3L 21243747 intron Eip78C + chr3L 21247536 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_9_21245001 chr3L_21245001 RAL-59 801 chr3L 21498837 21498869 chr3L 21500472 21500502 1360 10 1635 1.5 3.0 2.2 3.1 1665 chr3L 21498837 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_10_21495001 chr3L_21495001 RAL-59 802 chr3L 21749325 21749346 chr3L 21754485 21754504 Doc 11 5159 2.5 6.5 4.5 2.0 5179 chr3L 21749325 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754504 intron Syn1 - chr3L_11_21750001 chr3L_21750001 RAL-59 803 chr3L 21776680 21776869 chr3L 21776767 21776971 9 92 4.5 1.0 2.8 2.4 291 chr3L 21776680 intron,intron CG42689 +,CG42552 + chr3L 21776826 exon,intron CG42689 +,CG42552 + chr3L 21776971 exon,intron CG42689 +,CG42552 + chr3L_9_21775001 chr3L_21775001 RAL-59 804 chr3L 21852269 21852276 chr3L 21852362 21852369 4 93 5.0 7.5 6.2 0.6 100 chr3L 21852269 intron mub + chr3L 21852319 intron mub + chr3L 21852369 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-59 805 chr3L 21901026 21901044 chr3L 21901119 21901137 12 93 4.0 8.0 6.0 1.7 111 chr3L 21901026 intron mub + chr3L 21901082 intron mub + chr3L 21901137 intron mub + chr3L_12_21900001 chr3L_21900001 RAL-59 806 chr3L 21952458 21952478 chr3L 21953201 21953221 transib1 4 743 0.5 1.5 1.0 2.0 763 chr3L 21952458 intergenic not near genes chr3L 21952840 intergenic not near genes chr3L 21953221 intergenic not near genes chr3L_4_21950001 chr3L_21950001 RAL-59 807 chr3L 22016366 22016394 chr3L 22016482 22016510 7 116 3.0 2.5 2.8 1.8 144 chr3L 22016366 intergenic not near genes chr3L 22016438 intergenic not near genes chr3L 22016510 intergenic not near genes chr3L_7_22015001 chr3L_22015001 RAL-59 808 chr3L 22018714 22018737 chr3L 22018788 22018816 12 75 4.0 3.5 3.8 2.5 102 chr3L 22018714 intergenic not near genes chr3L 22018765 intergenic not near genes chr3L 22018816 intergenic not near genes chr3L_12_22015001 chr3L_22015001 RAL-59 809 chr3L 22033688 22033719 chr3L 22033766 22033797 7 78 0.0 0.5 0.2 5.8 109 chr3L 22033688 intergenic not near genes chr3L 22033742 intergenic not near genes chr3L 22033797 intergenic not near genes chr3L_7_22030001 chr3L_22030001 RAL-59 810 chr3L 22099679 22099693 chr3L 22105865 22105879 3S18 4 6186 2.5 0.0 1.2 1.8 6200 chr3L 22099679 intergenic not near genes chr3L 22102779 intergenic not near genes chr3L 22105879 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-59 811 chr3L 22124809 22124840 chr3L 22124892 22124923 8 83 0.5 2.5 1.5 3.2 114 chr3L 22124809 intergenic not near genes chr3L 22124866 intergenic not near genes chr3L 22124923 intergenic not near genes chr3L_8_22120001 chr3L_22120001 RAL-59 812 chr3L 22137523 22137556 chr3L 22137600 22137633 4 77 0.0 0.5 0.2 3.3 110 chr3L 22137523 intron olf413 + chr3L 22137578 intron olf413 + chr3L 22137633 intron olf413 + chr3L_4_22135001 chr3L_22135001 RAL-59 813 chr3L 22166450 22166476 chr3L 22166528 22166554 4 78 1.5 2.5 2.0 1.3 104 chr3L 22166450 intron olf413 + chr3L 22166502 intron olf413 + chr3L 22166554 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-59 814 chr3L 22169458 22169485 chr3L 22169548 22169578 5 92 3.0 1.0 2.0 1.7 120 chr3L 22169458 intron olf413 + chr3L 22169518 intron olf413 + chr3L 22169578 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-59 815 chr3L 22179091 22179118 chr3L 22179177 22179204 10 84 1.0 3.0 2.0 3.3 113 chr3L 22179091 intron olf413 + chr3L 22179148 intron olf413 + chr3L 22179204 intron olf413 + chr3L_10_22175001 chr3L_22175001 RAL-59 816 chr3L 22411383 22411391 chr3L 22411446 22411468 5 74 6.5 1.0 3.8 1.0 85 chr3L 22411383 intergenic not near genes chr3L 22411426 intergenic not near genes chr3L 22411468 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-59 817 chr3L 22447196 22447233 chr3L 22447287 22447324 7 90 2.0 1.5 1.8 2.5 128 chr3L 22447196 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447324 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-59 818 chr3L 22554431 22554452 chr3L 22554507 22554527 7 76 2.0 6.0 4.0 1.4 96 chr3L 22554431 intergenic not near genes chr3L 22554479 intergenic not near genes chr3L 22554527 intergenic not near genes chr3L_7_22550001 chr3L_22550001 RAL-59 819 chr3L 22555770 22555801 chr3L 22563240 22563241 blood 5 7464 2.5 0.5 1.5 2.0 7471 chr3L 22555770 intergenic not near genes chr3L 22559506 intergenic not near genes chr3L 22563241 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-59 820 chr3L 22569580 22569601 chr3L 22569678 22569696 5 97 2.0 4.0 3.0 1.2 116 chr3L 22569580 intergenic not near genes chr3L 22569638 intergenic not near genes chr3L 22569696 intergenic not near genes chr3L_5_22565001 chr3L_22565001 RAL-59 821 chr3L 22577622 22577652 chr3L 22582409 22582440 Doc 11 4786 2.5 5.0 3.8 2.3 4818 chr3L 22577622 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582440 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 RAL-59 822 chr3L 22617197 22617221 chr3L 22624649 22624673 blood 5 7451 2.0 1.0 1.5 2.0 7476 chr3L 22617197 intron CG14459 - chr3L 22620935 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-59 823 chr3L 22756399 22756430 chr3L 22756476 22756507 12 77 6.0 5.0 5.5 1.8 108 chr3L 22756399 intron SPoCk + chr3L 22756453 intron SPoCk + chr3L 22756507 intron SPoCk + chr3L_12_22755001 chr3L_22755001 RAL-59 824 chr3L 22771642 22771665 chr3L 22771723 22771747 11 81 5.0 2.0 3.5 2.4 105 chr3L 22771642 intron SPoCk + chr3L 22771694 intron SPoCk + chr3L 22771747 intron SPoCk + chr3L_11_22770001 chr3L_22770001 RAL-59 825 chr3L 22853691 22853722 chr3L 22853777 22853807 7 86 2.5 3.5 3.0 1.8 116 chr3L 22853691 5` UTR CR43426 + chr3L 22853749 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_7_22850001 chr3L_22850001 RAL-59 826 chr3L 22865991 22865999 chr3L 22867124 22867132 Doc 4 1133 2.5 2.0 2.2 1.2 1141 chr3L 22865991 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867132 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-59 827 chr3L 22897195 22897225 chr3L 22897278 22897307 13 83 2.0 3.5 2.8 3.4 112 chr3L 22897195 intergenic not near genes chr3L 22897251 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_13_22895001 chr3L_22895001 RAL-59 828 chr3L 23042227 23042254 chr3L 23048980 23049007 gypsy6 8 6753 2.5 6.0 4.2 1.5 6780 chr3L 23042227 intergenic not near genes chr3L 23045617 intergenic not near genes chr3L 23049007 intergenic not near genes chr3L_8_23045001 chr3L_23045001 RAL-59 829 chr3L 23088296 23088315 chr3L 23088378 23088397 6 82 1.5 2.0 1.8 2.1 101 chr3L 23088296 intergenic not near genes chr3L 23088346 intergenic not near genes chr3L 23088397 intergenic not near genes chr3L_6_23085001 chr3L_23085001 RAL-59 830 chr3L 23182270 23182294 chr3L 23182374 23182408 5 112 3.0 2.0 2.5 1.4 138 chr3L 23182270 intron CG34031 + chr3L 23182339 intron CG34031 + chr3L 23182408 intron CG34031 + chr3L_5_23180001 chr3L_23180001 RAL-59 831 chr3L 23875529 23875556 chr3L 23875609 23875637 8 80 3.0 5.0 4.0 1.6 108 chr3L 23875529 intron CG40470 - chr3L 23875583 intron CG40470 - chr3L 23875637 intron CG40470 - chr3L_8_23875001 chr3L_23875001 RAL-59 832 chr3L 24168633 24168652 chr3L 24176393 24176413 ZAM 6 7761 5.0 3.5 4.2 1.2 7780 chr3L 24168633 intron Snap25 + chr3L 24172523 intron Snap25 + chr3L 24176413 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-59 833 chr3L 24290494 24290514 chr3L 24290836 24290859 4 343 3.0 0.5 1.8 1.4 365 chr3L 24290494 intron,3` UTR Snap25 +,CR45159 - chr3L 24290676 intron,3` UTR Snap25 +,CR45159 - chr3L 24290859 intron,3` UTR Snap25 +,CR45159 - chr3L_4_24290001 chr3L_24290001 RAL-59 834 chr3L 25331642 25331650 chr3L 25331727 25331741 4 88 4.5 4.5 4.5 0.7 99 chr3L 25331642 intergenic not near genes chr3L 25331692 intergenic not near genes chr3L 25331741 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-59 835 chr3L 25635715 25635739 chr3L 25635987 25636011 4 270 4.0 2.5 3.2 1.0 296 chr3L 25635715 intron CG41343 - chr3L 25635863 intron CG41343 - chr3L 25636011 intron CG41343 - chr3L_4_25635001 chr3L_25635001 RAL-59 836 chr3L 23311672 23311676 chr3L 26026794 26026812 G6 4 2715126 14.5 21.0 17.8 0.2 2715140 chr3L 23311672 intergenic not near genes chr3L 24669242 intergenic not near genes chr3L 26026812 intergenic not near genes chr3L_4_24665001 chr3L_24665001 RAL-59 837 chr3L 26717672 26717692 chr3L 26717748 26717768 8 76 3.5 3.5 3.5 1.8 96 chr3L 26717672 intergenic not near genes chr3L 26717720 intergenic not near genes chr3L 26717768 intergenic not near genes chr3L_8_26715001 chr3L_26715001 RAL-59 838 chr3R 2534134 2534158 chr3R 2541702 2541727 7 7567 16.0 11.5 13.8 0.5 7593 chr3R 2534134 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541727 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-59 839 chr3R 2534159 2534167 chr3R 2541701 2541736 7 7565 15.0 11.5 13.2 0.5 7577 chr3R 2534159 intergenic not near genes chr3R 2537948 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-59 840 chr3R 2874325 2874346 chr3R 2874412 2874433 12 85 3.5 2.5 3.0 3.0 108 chr3R 2874325 intergenic not near genes chr3R 2874379 intergenic not near genes chr3R 2874433 intergenic not near genes chr3R_12_2870001 chr3R_2870001 RAL-59 841 chr3R 4063813 4063830 chr3R 4069090 4069109 6 5279 5.0 6.5 5.8 0.9 5296 chr3R 4063813 intergenic not near genes chr3R 4066461 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-59 842 chr3R 4161549 4161567 chr3R 4161625 4161644 4 77 0.5 2.0 1.2 1.8 95 chr3R 4161549 3` UTR CG40198 - chr3R 4161596 exon CG40198 - chr3R 4161644 exon CG40198 - chr3R_4_4160001 chr3R_4160001 RAL-59 843 chr3R 4609551 4609581 chr3R 4610715 4610745 1360 10 1164 1.0 3.0 2.0 3.3 1194 chr3R 4609551 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_10_4610001 chr3R_4610001 RAL-59 844 chr3R 4680711 4680735 chr3R 4680790 4680814 4 79 0.0 0.5 0.2 3.3 103 chr3R 4680711 intron CG43427 + chr3R 4680762 intron CG43427 + chr3R 4680814 5` UTR CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-59 845 chr3R 4753247 4753271 chr3R 4757550 4757554 F-element 7 4300 4.0 6.0 5.0 1.2 4307 chr3R 4753247 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757554 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-59 846 chr3R 4769158 4769187 chr3R 4769236 4769265 10 78 1.5 2.0 1.8 3.6 107 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-59 847 chr3R 4810159 4810186 chr3R 4810385 4810405 8 223 4.5 3.0 3.8 1.7 246 chr3R 4810159 intron,intron ctrip -,Hus1-like - chr3R 4810282 intron,intron ctrip -,Hus1-like - chr3R 4810405 intron,intron ctrip -,Hus1-like - chr3R_8_4810001 chr3R_4810001 RAL-59 848 chr3R 4861568 4861597 chr3R 4861646 4861678 14 79 6.0 4.0 5.0 2.3 110 chr3R 4861568 intron opa + chr3R 4861623 intron opa + chr3R 4861678 intron opa + chr3R_14_4860001 chr3R_4860001 RAL-59 849 chr3R 4887481 4887506 chr3R 4894858 4894883 rover 9 7376 3.5 4.5 4.0 1.8 7402 chr3R 4887481 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-59 850 chr3R 4896300 4896315 chr3R 4896391 4896408 4 92 1.0 0.5 0.8 2.2 108 chr3R 4896300 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896408 intergenic CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-59 851 chr3R 4966006 4966029 chr3R 4966098 4966121 8 92 2.5 1.0 1.8 2.9 115 chr3R 4966006 intron CG1124 + chr3R 4966064 intron CG1124 + chr3R 4966121 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-59 852 chr3R 5067982 5068011 chr3R 5073499 5073528 mdg3 5 5517 3.0 3.5 3.2 1.2 5546 chr3R 5067982 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073528 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-59 853 chr3R 5193902 5193934 chr3R 5194018 5194051 13 117 3.5 6.5 5.0 2.2 149 chr3R 5193902 intron cno - chr3R 5193976 intron cno - chr3R 5194051 intron cno - chr3R_13_5190001 chr3R_5190001 RAL-59 854 chr3R 5278091 5278120 chr3R 5278170 5278201 11 80 2.0 1.0 1.5 4.4 110 chr3R 5278091 intron mtd - chr3R 5278146 intron mtd - chr3R 5278201 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-59 855 chr3R 5306152 5306162 chr3R 5306214 5306214 5 71 5.0 3.0 4.0 1.0 62 chr3R 5306152 intron mtd - chr3R 5306183 intron mtd - chr3R 5306214 intron mtd - chr3R_5_5305001 chr3R_5305001 RAL-59 856 chr3R 5338395 5338429 chr3R 5343572 5343606 Rt1c 15 5176 2.5 5.5 4.0 3.0 5211 chr3R 5338395 intron mtd - chr3R 5341000 intron mtd - chr3R 5343606 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-59 857 chr3R 5385972 5386001 chr3R 5386143 5386169 7 170 5.0 3.5 4.2 1.3 197 chr3R 5385972 intron kkv - chr3R 5386070 intron kkv - chr3R 5386169 intron kkv - chr3R_7_5385001 chr3R_5385001 RAL-59 858 chr3R 5688780 5688814 chr3R 5688901 5688935 13 120 3.0 4.0 3.5 2.9 155 chr3R 5688780 intron plx + chr3R 5688858 intron plx + chr3R 5688935 intron plx + chr3R_13_5685001 chr3R_5685001 RAL-59 859 chr3R 5746015 5746034 chr3R 5746256 5746275 pogo 4 241 1.5 2.5 2.0 1.3 260 chr3R 5746015 3` UTR Madm + chr3R 5746145 3` UTR Madm + chr3R 5746275 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-59 860 chr3R 5809113 5809143 chr3R 5809360 5809393 pogo 7 249 1.0 0.5 0.8 3.9 280 chr3R 5809113 3` UTR CG11000 + chr3R 5809253 3` UTR CG11000 + chr3R 5809393 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-59 861 chr3R 5822377 5822402 chr3R 5823544 5823569 1360 7 1167 3.5 3.5 3.5 1.6 1192 chr3R 5822377 3` UTR CG2023 - chr3R 5822973 3` UTR CG2023 - chr3R 5823569 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-59 862 chr3R 5927566 5927577 chr3R 5927804 5927815 pogo 4 237 2.5 3.0 2.8 1.1 249 chr3R 5927566 intron CG34113 - chr3R 5927690 intron CG34113 - chr3R 5927815 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-59 863 chr3R 5945299 5945308 chr3R 5945379 5945388 4 80 1.5 5.5 3.5 0.9 89 chr3R 5945299 intron CG34113 - chr3R 5945344 intron CG34113 - chr3R 5945388 intron CG34113 - chr3R_4_5945001 chr3R_5945001 RAL-59 864 chr3R 5987723 5987732 chr3R 5987835 5987845 4 112 1.5 7.0 4.2 0.8 122 chr3R 5987723 intergenic not near genes chr3R 5987784 intergenic not near genes chr3R 5987845 intergenic not near genes chr3R_4_5985001 chr3R_5985001 RAL-59 865 chr3R 5989333 5989365 chr3R 5989416 5989448 11 83 2.0 1.0 1.5 4.4 115 chr3R 5989333 5` UTR CR44927 + chr3R 5989390 5` UTR CR44927 + chr3R 5989448 5` UTR CR44927 + chr3R_11_5985001 chr3R_5985001 RAL-59 866 chr3R 6015962 6015994 chr3R 6024442 6024475 Tirant 21 8480 2.0 2.5 2.2 6.6 8513 chr3R 6015962 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_21_6020001 chr3R_6020001 RAL-59 867 chr3R 6158507 6158538 chr3R 6167090 6167120 Tirant 12 8582 3.0 3.5 3.2 2.9 8613 chr3R 6158507 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_12_6160001 chr3R_6160001 RAL-59 868 chr3R 6206285 6206319 chr3R 6206502 6206533 BS 16 217 4.5 4.5 4.5 2.9 248 chr3R 6206285 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_16_6205001 chr3R_6205001 RAL-59 869 chr3R 6322067 6322092 chr3R 6322146 6322171 6 79 0.5 0.0 0.2 5.0 104 chr3R 6322067 intron Osi17 + chr3R 6322119 intron Osi17 + chr3R 6322171 intron Osi17 + chr3R_6_6320001 chr3R_6320001 RAL-59 870 chr3R 6627456 6627492 chr3R 6627534 6627570 20 78 5.0 5.0 5.0 3.3 114 chr3R 6627456 exon sowi - chr3R 6627513 exon sowi - chr3R 6627570 exon sowi - chr3R_20_6625001 chr3R_6625001 RAL-59 871 chr3R 6689339 6689371 chr3R 6689421 6689453 10 82 3.0 1.0 2.0 3.3 114 chr3R 6689339 intergenic Ccp84Af - chr3R 6689396 intergenic Ccp84Af - chr3R 6689453 intergenic Ccp84Af - chr3R_10_6685001 chr3R_6685001 RAL-59 872 chr3R 6862221 6862243 chr3R 6862308 6862329 6 87 2.5 2.0 2.2 1.9 108 chr3R 6862221 intergenic not near genes chr3R 6862275 intergenic not near genes chr3R 6862329 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-59 873 chr3R 6866377 6866399 chr3R 6866685 6866708 6 309 2.0 7.5 4.8 1.0 331 chr3R 6866377 intergenic ftz + chr3R 6866542 intergenic ftz + chr3R 6866708 intergenic ftz + chr3R_6_6865001 chr3R_6865001 RAL-59 874 chr3R 6987414 6987429 chr3R 6987497 6987512 5 83 2.0 2.5 2.2 1.6 98 chr3R 6987414 intron Antp - chr3R 6987463 intron Antp - chr3R 6987512 intron Antp - chr3R_5_6985001 chr3R_6985001 RAL-59 875 chr3R 7311553 7311586 chr3R 7311639 7311672 4 86 0.5 0.5 0.5 2.7 119 chr3R 7311553 intergenic not near genes chr3R 7311612 intergenic not near genes chr3R 7311672 intergenic not near genes chr3R_4_7310001 chr3R_7310001 RAL-59 876 chr3R 7550518 7550538 chr3R 7550849 7550881 7 338 3.5 1.5 2.5 2.0 363 chr3R 7550518 intergenic not near genes chr3R 7550700 intergenic not near genes chr3R 7550881 intergenic not near genes chr3R_7_7550001 chr3R_7550001 RAL-59 877 chr3R 7574626 7574652 chr3R 7574705 7574734 4 81 1.5 2.0 1.8 1.4 108 chr3R 7574626 intron CG34127 - chr3R 7574680 intron CG34127 - chr3R 7574734 intron CG34127 - chr3R_4_7570001 chr3R_7570001 RAL-59 878 chr3R 7740896 7740912 chr3R 7740978 7740996 6 84 3.0 1.5 2.2 1.9 100 chr3R 7740896 intergenic CR44935 + chr3R 7740946 intergenic CR44935 + chr3R 7740996 intergenic CR44935 + chr3R_6_7740001 chr3R_7740001 RAL-59 879 chr3R 7857649 7857674 chr3R 7857732 7857756 8 82 0.5 1.5 1.0 4.0 107 chr3R 7857649 3` UTR CG17816 - chr3R 7857702 3` UTR CG17816 - chr3R 7857756 3` UTR CG17816 - chr3R_8_7855001 chr3R_7855001 RAL-59 880 chr3R 8101762 8101784 chr3R 8104846 8104868 G2 4 3084 6.5 2.0 4.2 0.8 3106 chr3R 8101762 exon CG7900 + chr3R 8103315 intron CG7900 + chr3R 8104868 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-59 881 chr3R 8188383 8188515 chr3R 8188468 8188606 4 86 0.0 0.0 0.0 4.0 223 chr3R 8188383 intergenic not near genes chr3R 8188494 intergenic not near genes chr3R 8188606 intergenic not near genes chr3R_4_8185001 chr3R_8185001 RAL-59 882 chr3R 8207555 8207585 chr3R 8208398 8208430 F-element 10 844 0.5 3.5 2.0 3.3 875 chr3R 8207555 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_10_8205001 chr3R_8205001 RAL-59 883 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568289 21.0 29.0 25.0 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-59 884 chr3R 8393580 8393602 chr3R 8393664 8393685 5 82 3.0 4.5 3.8 1.0 105 chr3R 8393580 intron CG45263 - chr3R 8393632 intron CG45263 - chr3R 8393685 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-59 885 chr3R 8403005 8403040 chr3R 8412171 8412206 roo 16 9166 5.0 6.0 5.5 2.5 9201 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_16_8405001 chr3R_8405001 RAL-59 886 chr3R 8450064 8450086 chr3R 8450190 8450214 8 126 0.5 5.0 2.8 2.1 150 chr3R 8450064 intron CG45263 - chr3R 8450139 intron CG45263 - chr3R 8450214 intron CG45263 - chr3R_8_8450001 chr3R_8450001 RAL-59 887 chr3R 8552370 8552378 chr3R 8552450 8552456 5 80 5.5 6.5 6.0 0.7 86 chr3R 8552370 intergenic Or85d + chr3R 8552413 intergenic Or85d + chr3R 8552456 intergenic Or85d + chr3R_5_8550001 chr3R_8550001 RAL-59 888 chr3R 8563563 8563591 chr3R 8563674 8563701 5 111 0.5 1.5 1.0 2.5 138 chr3R 8563563 3` UTR CR44291 - chr3R 8563632 3` UTR CR44291 - chr3R 8563701 3` UTR CR44291 - chr3R_5_8560001 chr3R_8560001 RAL-59 889 chr3R 8570479 8570499 chr3R 8575115 8575133 HMS-Beagle 6 4636 4.0 3.5 3.8 1.2 4654 chr3R 8570479 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575133 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-59 890 chr3R 8601766 8601798 chr3R 8610919 8610951 roo 4 9153 3.5 4.5 4.0 0.8 9185 chr3R 8601766 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-59 891 chr3R 8630915 8630936 chr3R 8631021 8631042 8 106 2.5 4.0 3.2 1.9 127 chr3R 8630915 intergenic not near genes chr3R 8630978 intergenic not near genes chr3R 8631042 intergenic not near genes chr3R_8_8630001 chr3R_8630001 RAL-59 892 chr3R 8636933 8636964 chr3R 8637236 8637267 13 302 3.0 2.5 2.8 3.4 334 chr3R 8636933 intergenic not near genes chr3R 8637100 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_13_8635001 chr3R_8635001 RAL-59 893 chr3R 8707355 8707381 chr3R 8709796 8709815 jockey 15 2440 7.5 8.0 7.8 1.7 2460 chr3R 8707355 intergenic not near genes chr3R 8708585 intergenic not near genes chr3R 8709815 intergenic not near genes chr3R_15_8705001 chr3R_8705001 RAL-59 894 chr3R 8757504 8757518 chr3R 8757568 8757568 8 70 3.0 3.5 3.2 1.9 64 chr3R 8757504 intron,intron CG11768 -,CG34135 - chr3R 8757536 intron,intron CG11768 -,CG34135 - chr3R 8757568 intron,intron CG11768 -,CG34135 - chr3R_8_8755001 chr3R_8755001 RAL-59 895 chr3R 8875536 8875572 chr3R 8875613 8875649 14 71 1.5 5.5 3.5 3.1 113 chr3R 8875536 intron pyd - chr3R 8875592 intron pyd - chr3R 8875649 intron pyd - chr3R_14_8875001 chr3R_8875001 RAL-59 896 chr3R 9056826 9056835 chr3R 9056908 9056917 4 82 5.0 0.5 2.8 1.1 91 chr3R 9056826 intron Kdm2 + chr3R 9056872 intron Kdm2 + chr3R 9056917 intron Kdm2 + chr3R_4_9055001 chr3R_9055001 RAL-59 897 chr3R 9082051 9082072 chr3R 9082142 9082166 5 89 5.0 4.0 4.5 0.9 115 chr3R 9082051 intron pum - chr3R 9082108 intron pum - chr3R 9082166 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-59 898 chr3R 9083159 9083163 chr3R 9083244 9083248 4 85 15.5 18.5 17.0 0.2 89 chr3R 9083159 intron pum - chr3R 9083204 intron pum - chr3R 9083248 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-59 899 chr3R 9102294 9102317 chr3R 9102372 9102395 6 74 5.5 5.5 5.5 0.9 101 chr3R 9102294 intron pum - chr3R 9102344 intron pum - chr3R 9102395 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-59 900 chr3R 9270717 9270745 chr3R 9270802 9270829 6 85 9.5 9.5 9.5 0.6 112 chr3R 9270717 intergenic Vps16A + chr3R 9270773 intergenic not near genes chr3R 9270829 intergenic not near genes chr3R_6_9270001 chr3R_9270001 RAL-59 901 chr3R 9278779 9278806 chr3R 9284039 9284066 Rt1a 4 5260 1.5 12.5 7.0 0.5 5287 chr3R 9278779 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284066 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-59 902 chr3R 9329681 9329696 chr3R 9329774 9329794 5 95 10.0 6.0 8.0 0.6 113 chr3R 9329681 exon CG12951 - chr3R 9329738 exon CG12951 - chr3R 9329794 exon CG12951 - chr3R_5_9325001 chr3R_9325001 RAL-59 903 chr3R 9329698 9329945 chr3R 9329766 9330023 5 88 6.0 6.0 6.0 0.7 325 chr3R 9329698 exon CG12951 - chr3R 9329860 exon CG12951 - chr3R 9330023 intron CG12951 - chr3R_5_9325001 chr3R_9325001 RAL-59 904 chr3R 9382818 9382843 chr3R 9382943 9382968 9 124 3.5 1.0 2.2 2.8 150 chr3R 9382818 intron FER - chr3R 9382893 intron FER - chr3R 9382968 intron FER - chr3R_9_9380001 chr3R_9380001 RAL-59 905 chr3R 9434693 9434724 chr3R 9434773 9434808 6 84 5.5 3.0 4.2 1.2 115 chr3R 9434693 intron ps + chr3R 9434750 intron ps + chr3R 9434808 intron ps + chr3R_6_9430001 chr3R_9430001 RAL-59 906 chr3R 9524017 9524031 chr3R 9524105 9524119 4 88 3.5 3.5 3.5 0.9 102 chr3R 9524017 intron CG8176 + chr3R 9524068 intron CG8176 + chr3R 9524119 intron CG8176 + chr3R_4_9520001 chr3R_9520001 RAL-59 907 chr3R 9601464 9601492 chr3R 9601581 9601610 4 118 4.0 1.0 2.5 1.1 146 chr3R 9601464 intron CG8312 + chr3R 9601537 intron CG8312 + chr3R 9601610 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-59 908 chr3R 9620956 9620956 chr3R 21907535 21907536 5 12286580 5.5 29.0 17.2 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-59 909 chr3R 9918417 9918443 chr3R 9918514 9918540 6 96 2.5 7.0 4.8 1.0 123 chr3R 9918417 intron Glut4EF + chr3R 9918478 intron Glut4EF + chr3R 9918540 intron Glut4EF + chr3R_6_9915001 chr3R_9915001 RAL-59 910 chr3R 10091844 10091872 chr3R 10092142 10092169 4 298 8.5 10.0 9.2 0.4 325 chr3R 10091844 intergenic not near genes chr3R 10092006 intergenic not near genes chr3R 10092169 intergenic not near genes chr3R_4_10090001 chr3R_10090001 RAL-59 911 chr3R 10151742 10151764 chr3R 10152018 10152040 4 276 5.5 1.0 3.2 1.0 298 chr3R 10151742 intron Invadolysin + chr3R 10151891 intron Invadolysin + chr3R 10152040 intron Invadolysin + chr3R_4_10150001 chr3R_10150001 RAL-59 912 chr3R 10349164 10349176 chr3R 10349244 10349256 4 80 5.0 8.0 6.5 0.5 92 chr3R 10349164 intron CG31406 + chr3R 10349210 exon CG31406 + chr3R 10349256 exon CG31406 + chr3R_4_10345001 chr3R_10345001 RAL-59 913 chr3R 10443157 10443183 chr3R 10443273 10443295 5 115 13.5 11.5 12.5 0.4 138 chr3R 10443157 intergenic not near genes chr3R 10443226 intergenic not near genes chr3R 10443295 intergenic not near genes chr3R_5_10440001 chr3R_10440001 RAL-59 914 chr3R 10646106 10646124 chr3R 10646257 10646275 5 151 3.0 3.0 3.0 1.2 169 chr3R 10646106 intergenic CR44018 + chr3R 10646190 intergenic CR44018 + chr3R 10646275 intergenic not near genes chr3R_5_10645001 chr3R_10645001 RAL-59 915 chr3R 10723763 10723795 chr3R 10723855 10723887 8 92 6.0 5.0 5.5 1.2 124 chr3R 10723763 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723887 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-59 916 chr3R 10727650 10727678 chr3R 10727730 10727749 9 79 9.5 10.0 9.8 0.8 99 chr3R 10727650 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727749 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-59 917 chr3R 10731005 10731014 chr3R 10731170 10731180 4 166 10.5 5.5 8.0 0.4 175 chr3R 10731005 intergenic not near genes chr3R 10731092 intergenic not near genes chr3R 10731180 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-59 918 chr3R 10919685 10919718 chr3R 10919762 10919796 4 78 2.5 1.0 1.8 1.4 111 chr3R 10919685 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-59 919 chr3R 10920055 10920075 chr3R 10920133 10920153 4 78 1.0 3.5 2.2 1.2 98 chr3R 10920055 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920153 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-59 920 chr3R 10927275 10927303 chr3R 10927603 10927631 5 328 5.5 5.5 5.5 0.8 356 chr3R 10927275 intergenic not near genes chr3R 10927453 intergenic not near genes chr3R 10927631 intergenic not near genes chr3R_5_10925001 chr3R_10925001 RAL-59 921 chr3R 10994292 10994305 chr3R 10994371 10994382 4 78 4.5 6.0 5.2 0.6 90 chr3R 10994292 intron CG34114 + chr3R 10994337 intron CG34114 + chr3R 10994382 intron CG34114 + chr3R_4_10990001 chr3R_10990001 RAL-59 922 chr3R 11102325 11102355 chr3R 11102405 11102436 10 80 12.5 14.0 13.2 0.7 111 chr3R 11102325 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_10_11100001 chr3R_11100001 RAL-59 923 chr3R 11174606 11174614 chr3R 11175320 11175328 6 714 22.0 25.5 23.8 0.2 722 chr3R 11174606 exon Ugt86Dj - chr3R 11174967 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_6_11170001 chr3R_11170001 RAL-59 924 chr3R 11261228 11261249 chr3R 11261324 11261345 7 96 8.0 9.0 8.5 0.7 117 chr3R 11261228 intergenic not near genes chr3R 11261286 intergenic not near genes chr3R 11261345 intergenic not near genes chr3R_7_11260001 chr3R_11260001 RAL-59 925 chr3R 11494370 11494394 chr3R 11494447 11494471 4 77 10.0 11.0 10.5 0.3 101 chr3R 11494370 intergenic not near genes chr3R 11494420 intergenic not near genes chr3R 11494471 intergenic not near genes chr3R_4_11490001 chr3R_11490001 RAL-59 926 chr3R 11518813 11518839 chr3R 11518904 11518926 9 90 3.0 4.5 3.8 1.9 113 chr3R 11518813 intergenic not near genes chr3R 11518870 intergenic not near genes chr3R 11518926 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-59 927 chr3R 11637589 11637613 chr3R 11637666 11637690 5 77 4.0 5.0 4.5 0.9 101 chr3R 11637589 5` UTR,5` UTR Csk -,CR44137 + chr3R 11637640 intron,5` UTR Csk -,CR44137 + chr3R 11637690 intron,5` UTR Csk -,CR44137 + chr3R_5_11635001 chr3R_11635001 RAL-59 928 chr3R 11710204 11710234 chr3R 11710282 11710312 10 77 12.5 10.0 11.2 0.8 108 chr3R 11710204 intergenic not near genes chr3R 11710258 intergenic not near genes chr3R 11710312 intergenic not near genes chr3R_10_11710001 chr3R_11710001 RAL-59 929 chr3R 11734164 11734190 chr3R 11734282 11734308 12 119 9.0 5.0 7.0 1.5 144 chr3R 11734164 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734308 intergenic not near genes chr3R_12_11730001 chr3R_11730001 RAL-59 930 chr3R 11763933 11763945 chr3R 11764012 11764016 5 76 5.0 8.0 6.5 0.7 83 chr3R 11763933 5` UTR Lk6 - chr3R 11763974 5` UTR Lk6 - chr3R 11764016 5` UTR Lk6 - chr3R_5_11760001 chr3R_11760001 RAL-59 931 chr3R 11834173 11834200 chr3R 11834248 11834283 7 80 4.5 5.5 5.0 1.2 110 chr3R 11834173 intron CG6959 - chr3R 11834228 intron CG6959 - chr3R 11834283 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-59 932 chr3R 11841067 11841095 chr3R 11846255 11846286 BS 8 5190 4.0 2.5 3.2 1.9 5219 chr3R 11841067 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-59 933 chr3R 12081999 12082023 chr3R 12082074 12082099 4 76 7.5 5.5 6.5 0.5 100 chr3R 12081999 intron CG14741 - chr3R 12082049 intron CG14741 - chr3R 12082099 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-59 934 chr3R 12134881 12134911 chr3R 12135008 12135031 6 125 13.0 12.0 12.5 0.4 150 chr3R 12134881 intergenic not near genes chr3R 12134956 intergenic not near genes chr3R 12135031 intergenic not near genes chr3R_6_12130001 chr3R_12130001 RAL-59 935 chr3R 12154034 12154063 chr3R 12154460 12154489 6 426 10.0 21.5 15.8 0.4 455 chr3R 12154034 intron dpr15 - chr3R 12154262 intron dpr15 - chr3R 12154489 intron dpr15 - chr3R_6_12150001 chr3R_12150001 RAL-59 936 chr3R 12202292 12202312 chr3R 12202401 12202421 4 109 5.0 12.0 8.5 0.4 129 chr3R 12202292 intergenic not near genes chr3R 12202356 intergenic not near genes chr3R 12202421 intergenic not near genes chr3R_4_12200001 chr3R_12200001 RAL-59 937 chr3R 12392890 12392898 chr3R 12392990 12392995 4 98 2.5 6.0 4.2 0.8 105 chr3R 12392890 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392942 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392995 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-59 938 chr3R 12599379 12599395 chr3R 12599462 12599478 4 83 3.5 3.5 3.5 0.9 99 chr3R 12599379 intergenic not near genes chr3R 12599428 intergenic not near genes chr3R 12599478 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-59 939 chr3R 12669543 12669574 chr3R 12669628 12669634 8 82 13.5 13.0 13.2 0.6 91 chr3R 12669543 intron CG14395 + chr3R 12669588 intron CG14395 + chr3R 12669634 intron CG14395 + chr3R_8_12665001 chr3R_12665001 RAL-59 940 chr3R 12672865 12672896 chr3R 12672942 12672956 7 70 15.5 16.5 16.0 0.4 91 chr3R 12672865 exon CG14395 + chr3R 12672910 exon CG14395 + chr3R 12672956 exon CG14395 + chr3R_7_12670001 chr3R_12670001 RAL-59 941 chr3R 12701989 12702015 chr3R 12702065 12702091 5 74 10.0 9.0 9.5 0.5 102 chr3R 12701989 intron Past1 + chr3R 12702040 intron Past1 + chr3R 12702091 intron Past1 + chr3R_5_12700001 chr3R_12700001 RAL-59 942 chr3R 12920154 12920179 chr3R 12925357 12925382 copia 12 5202 1.5 2.5 2.0 4.0 5228 chr3R 12920154 intron beat-Vb + chr3R 12922768 intron beat-Vb + chr3R 12925382 intron beat-Vb + chr3R_12_12920001 chr3R_12920001 RAL-59 943 chr3R 13059964 13059975 chr3R 13060159 13060170 4 195 2.0 0.0 1.0 2.0 206 chr3R 13059964 intron sim + chr3R 13060067 intron sim + chr3R 13060170 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-59 944 chr3R 13120772 13120798 chr3R 13120849 13120875 8 77 10.0 11.5 10.8 0.7 103 chr3R 13120772 intron timeout + chr3R 13120824 intron timeout + chr3R 13120875 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-59 945 chr3R 13135832 13135857 chr3R 13138007 13138032 pogo 4 2175 1.0 2.5 1.8 1.4 2200 chr3R 13135832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-59 946 chr3R 13143041 13143066 chr3R 13148617 13148642 mdg3 11 5574 4.0 5.5 4.8 1.9 5601 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13145001 chr3R_13145001 RAL-59 947 chr3R 13195950 13195984 chr3R 13196045 13196078 18 95 2.5 3.0 2.8 4.7 128 chr3R 13195950 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196078 intergenic not near genes chr3R_18_13195001 chr3R_13195001 RAL-59 948 chr3R 13394673 13394702 chr3R 13395022 13395051 10 349 3.0 11.5 7.2 1.2 378 chr3R 13394673 intron CCHa2 - chr3R 13394862 intron CCHa2 - chr3R 13395051 intron CCHa2 - chr3R_10_13390001 chr3R_13390001 RAL-59 949 chr3R 13525182 13525217 chr3R 13525284 13525314 4 101 6.5 5.5 6.0 0.6 132 chr3R 13525182 intergenic not near genes chr3R 13525248 intergenic not near genes chr3R 13525314 intergenic not near genes chr3R_4_13525001 chr3R_13525001 RAL-59 950 chr3R 13672940 13672974 chr3R 13673017 13673052 8 78 1.5 1.5 1.5 3.2 112 chr3R 13672940 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673052 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-59 951 chr3R 13693028 13693028 chr3R 21907534 21907536 8 8214507 3.0 29.0 16.0 0.5 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-59 952 chr3R 13891242 13891249 chr3R 13891322 13891329 4 80 6.0 6.5 6.2 0.6 87 chr3R 13891242 intergenic not near genes chr3R 13891286 intergenic not near genes chr3R 13891329 intergenic not near genes chr3R_4_13890001 chr3R_13890001 RAL-59 953 chr3R 13926004 13926018 chr3R 13926064 13926095 7 73 11.5 9.5 10.5 0.6 91 chr3R 13926004 intergenic not near genes chr3R 13926050 intergenic not near genes chr3R 13926095 intergenic not near genes chr3R_7_13925001 chr3R_13925001 RAL-59 954 chr3R 14246392 14246417 chr3R 14247888 14247913 jockey 7 1494 4.5 2.0 3.2 1.7 1521 chr3R 14246392 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-59 955 chr3R 14357511 14357542 chr3R 14357919 14357950 5 408 1.0 2.5 1.8 1.8 439 chr3R 14357511 intron NK7.1 - chr3R 14357730 intron NK7.1 - chr3R 14357950 intron NK7.1 - chr3R_5_14355001 chr3R_14355001 RAL-59 956 chr3R 14447095 14447114 chr3R 14447173 14447192 4 78 8.0 10.0 9.0 0.4 97 chr3R 14447095 intron cv-c - chr3R 14447144 intron cv-c - chr3R 14447192 intron cv-c - chr3R_4_14445001 chr3R_14445001 RAL-59 957 chr3R 14497405 14497422 chr3R 14497486 14497503 4 80 6.5 6.5 6.5 0.5 98 chr3R 14497405 intron CR44177 + chr3R 14497454 intron CR44177 + chr3R 14497503 intron CR44177 + chr3R_4_14495001 chr3R_14495001 RAL-59 958 chr3R 14520437 14520473 chr3R 14520537 14520573 6 100 11.5 7.5 9.5 0.6 136 chr3R 14520437 intron Pde6 - chr3R 14520505 intron Pde6 - chr3R 14520573 intron Pde6 - chr3R_6_14520001 chr3R_14520001 RAL-59 959 chr3R 14632681 14632704 chr3R 14632773 14632812 4 104 18.0 13.5 15.8 0.2 131 chr3R 14632681 intron,intron CG7886 -,Cad88C + chr3R 14632746 intron,intron CG7886 -,Cad88C + chr3R 14632812 intron,intron CG7886 -,Cad88C + chr3R_4_14630001 chr3R_14630001 RAL-59 960 chr3R 14779063 14779097 chr3R 14779143 14779177 8 80 1.0 5.0 3.0 2.0 114 chr3R 14779063 intron jvl + chr3R 14779120 intron jvl + chr3R 14779177 intron jvl + chr3R_8_14775001 chr3R_14775001 RAL-59 961 chr3R 15076655 15076689 chr3R 15076737 15076773 5 83 9.5 12.5 11.0 0.4 118 chr3R 15076655 intron dpr9 - chr3R 15076714 intron dpr9 - chr3R 15076773 intron dpr9 - chr3R_5_15075001 chr3R_15075001 RAL-59 962 chr3R 15143935 15143951 chr3R 15144118 15144134 4 183 0.5 0.5 0.5 2.7 199 chr3R 15143935 intron GlyS - chr3R 15144034 intron GlyS - chr3R 15144134 intron GlyS - chr3R_4_15140001 chr3R_15140001 RAL-59 963 chr3R 15162549 15162556 chr3R 15167317 15167324 F-element 4 4768 1.5 0.0 0.8 2.2 4775 chr3R 15162549 intron Gyc88E + chr3R 15164936 intron Gyc88E + chr3R 15167324 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-59 964 chr3R 15416250 15416284 chr3R 15416330 15416364 8 80 1.0 3.5 2.2 2.5 114 chr3R 15416250 3` UTR Atx2 + chr3R 15416307 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-59 965 chr3R 15601163 15601196 chr3R 15608684 15608718 412 4 7522 2.5 1.5 2.0 1.3 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-59 966 chr3R 15608787 15608822 chr3R 15609016 15609051 9 229 5.0 3.0 4.0 1.8 264 chr3R 15608787 intergenic not near genes chr3R 15608919 intergenic not near genes chr3R 15609051 intergenic not near genes chr3R_9_15605001 chr3R_15605001 RAL-59 967 chr3R 15676555 15676581 chr3R 15676634 15676657 7 78 0.0 3.5 1.8 2.5 102 chr3R 15676555 intron pxb + chr3R 15676606 intron pxb + chr3R 15676657 intron pxb + chr3R_7_15675001 chr3R_15675001 RAL-59 968 chr3R 15715806 15715836 chr3R 15715891 15715921 5 85 1.0 2.5 1.8 1.8 115 chr3R 15715806 exon CG31294 - chr3R 15715864 intron CG31294 - chr3R 15715921 exon CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-59 969 chr3R 15716844 15716871 chr3R 15716943 15716970 5 99 3.0 1.5 2.2 1.6 126 chr3R 15716844 intergenic CG31294 - chr3R 15716907 intergenic CG31294 - chr3R 15716970 intergenic CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-59 970 chr3R 15749009 15749035 chr3R 15749090 15749121 5 83 2.0 0.0 1.0 2.5 112 chr3R 15749009 intergenic not near genes chr3R 15749065 intergenic not near genes chr3R 15749121 intergenic not near genes chr3R_5_15745001 chr3R_15745001 RAL-59 971 chr3R 15808538 15808567 chr3R 15808634 15808663 7 96 2.0 1.0 1.5 2.8 125 chr3R 15808538 intron alpha-Man-IIb + chr3R 15808600 intron alpha-Man-IIb + chr3R 15808663 intron alpha-Man-IIb + chr3R_7_15805001 chr3R_15805001 RAL-59 972 chr3R 15984503 15984533 chr3R 15984605 15984635 4 102 0.5 3.0 1.8 1.4 132 chr3R 15984503 intergenic not near genes chr3R 15984569 intergenic not near genes chr3R 15984635 intergenic not near genes chr3R_4_15980001 chr3R_15980001 RAL-59 973 chr3R 16048852 16048880 chr3R 16048940 16048970 9 90 4.0 3.5 3.8 1.9 118 chr3R 16048852 intron ird5 - chr3R 16048911 intron ird5 - chr3R 16048970 intron ird5 - chr3R_9_16045001 chr3R_16045001 RAL-59 974 chr3R 16179078 16179110 chr3R 16179201 16179233 5 123 3.0 0.5 1.8 1.8 155 chr3R 16179078 intron CG8925 + chr3R 16179156 intron CG8925 + chr3R 16179233 intron CG8925 + chr3R_5_16175001 chr3R_16175001 RAL-59 975 chr3R 16472579 16472594 chr3R 16472655 16472662 4 72 6.0 6.0 6.0 0.6 83 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-59 976 chr3R 16582908 16582918 chr3R 16582987 16582997 6 79 4.0 4.5 4.2 1.2 89 chr3R 16582908 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16582997 intron Scp2 - chr3R_6_16580001 chr3R_16580001 RAL-59 977 chr3R 16704585 16704614 chr3R 16704663 16704691 9 78 4.5 1.0 2.8 2.4 106 chr3R 16704585 intron Ubx - chr3R 16704638 intron Ubx - chr3R 16704691 intron Ubx - chr3R_9_16700001 chr3R_16700001 RAL-59 978 chr3R 16756321 16756343 chr3R 16762512 16762526 diver 8 6190 6.0 1.5 3.8 1.7 6205 chr3R 16756321 intron bxd - chr3R 16759424 intron bxd - chr3R 16762526 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-59 979 chr3R 16782013 16782041 chr3R 16782094 16782122 16 80 5.5 4.5 5.0 2.7 109 chr3R 16782013 intergenic not near genes chr3R 16782068 intergenic not near genes chr3R 16782122 intergenic not near genes chr3R_16_16780001 chr3R_16780001 RAL-59 980 chr3R 16795291 16795320 chr3R 16795381 16795410 5 90 2.0 2.5 2.2 1.6 119 chr3R 16795291 intergenic not near genes chr3R 16795350 intergenic not near genes chr3R 16795410 intergenic not near genes chr3R_5_16795001 chr3R_16795001 RAL-59 981 chr3R 16816322 16816350 chr3R 16816494 16816521 13 171 3.5 3.0 3.2 3.1 199 chr3R 16816322 intron abd-A - chr3R 16816422 intron abd-A - chr3R 16816521 intron abd-A - chr3R_13_16815001 chr3R_16815001 RAL-59 982 chr3R 16946731 16946758 chr3R 16946806 16946837 5 78 2.0 0.5 1.2 2.3 106 chr3R 16946731 intron Abd-B - chr3R 16946784 intron Abd-B - chr3R 16946837 intron Abd-B - chr3R_5_16945001 chr3R_16945001 RAL-59 983 chr3R 17168921 17168945 chr3R 17169034 17169058 6 113 2.5 1.0 1.8 2.1 137 chr3R 17168921 intron Mur89F - chr3R 17168990 intron Mur89F - chr3R 17169058 intron Mur89F - chr3R_6_17165001 chr3R_17165001 RAL-59 984 chr3R 17312819 17312850 chr3R 17312904 17312935 4 85 1.5 2.0 1.8 1.4 116 chr3R 17312819 intergenic not near genes chr3R 17312877 intergenic not near genes chr3R 17312935 intergenic not near genes chr3R_4_17310001 chr3R_17310001 RAL-59 985 chr3R 17335161 17335187 chr3R 17335237 17335262 11 75 3.5 6.0 4.8 1.9 101 chr3R 17335161 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335262 intron beat-IIa - chr3R_11_17335001 chr3R_17335001 RAL-59 986 chr3R 17355490 17355520 chr3R 17355568 17355598 7 78 1.0 1.0 1.0 3.5 108 chr3R 17355490 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355598 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-59 987 chr3R 17361805 17361832 chr3R 17361939 17361945 7 130 1.5 2.5 2.0 2.3 140 chr3R 17361805 intron beat-IIa - chr3R 17361875 intron beat-IIa - chr3R 17361945 intron beat-IIa - chr3R_7_17360001 chr3R_17360001 RAL-59 988 chr3R 17461217 17461230 chr3R 17461299 17461312 5 82 0.0 3.5 1.8 1.8 95 chr3R 17461217 intergenic not near genes chr3R 17461264 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-59 989 chr3R 17492194 17492201 chr3R 17492288 17492294 4 94 6.0 2.5 4.2 0.8 100 chr3R 17492194 intron Dscam3 - chr3R 17492244 intron Dscam3 - chr3R 17492294 intron Dscam3 - chr3R_4_17490001 chr3R_17490001 RAL-59 990 chr3R 17492202 17492222 chr3R 17492284 17492288 6 86 2.0 2.5 2.2 1.9 86 chr3R 17492202 intron Dscam3 - chr3R 17492245 intron Dscam3 - chr3R 17492288 intron Dscam3 - chr3R_6_17490001 chr3R_17490001 RAL-59 991 chr3R 17587211 17587242 chr3R 17587393 17587425 15 182 5.0 5.0 5.0 2.5 214 chr3R 17587211 intergenic not near genes chr3R 17587318 intergenic not near genes chr3R 17587425 intergenic not near genes chr3R_15_17585001 chr3R_17585001 RAL-59 992 chr3R 17734132 17734136 chr3R 17734221 17734224 4 88 5.0 7.0 6.0 0.6 92 chr3R 17734132 3` UTR CG14321 + chr3R 17734178 3` UTR CG14321 + chr3R 17734224 3` UTR CG14321 + chr3R_4_17730001 chr3R_17730001 RAL-59 993 chr3R 17814765 17814796 chr3R 17814850 17814881 5 85 3.5 1.5 2.5 1.4 116 chr3R 17814765 intron tinc + chr3R 17814823 intron tinc + chr3R 17814881 intron tinc + chr3R_5_17810001 chr3R_17810001 RAL-59 994 chr3R 17845204 17845215 chr3R 17845280 17845285 8 76 3.5 7.5 5.5 1.2 81 chr3R 17845204 intron tinc + chr3R 17845244 intron tinc + chr3R 17845285 intron tinc + chr3R_8_17845001 chr3R_17845001 RAL-59 995 chr3R 17859383 17859412 chr3R 17859463 17859490 7 77 4.5 4.5 4.5 1.3 107 chr3R 17859383 intron tinc + chr3R 17859436 intron tinc + chr3R 17859490 intron tinc + chr3R_7_17855001 chr3R_17855001 RAL-59 996 chr3R 17925857 17925889 chr3R 17927324 17927356 hobo 13 1467 4.5 4.5 4.5 2.4 1499 chr3R 17925857 intron cpo + chr3R 17926606 intron cpo + chr3R 17927356 intron cpo + chr3R_13_17925001 chr3R_17925001 RAL-59 997 chr3R 17960690 17960720 chr3R 17960875 17960905 14 184 3.0 3.0 3.0 3.5 215 chr3R 17960690 intron cpo + chr3R 17960798 intron cpo + chr3R 17960905 intron cpo + chr3R_14_17960001 chr3R_17960001 RAL-59 998 chr3R 18006449 18006461 chr3R 18006536 18006548 6 87 3.0 7.5 5.2 1.0 99 chr3R 18006449 intron cpo + chr3R 18006498 intron cpo + chr3R 18006548 intron cpo + chr3R_6_18005001 chr3R_18005001 RAL-59 999 chr3R 18291844 18291865 chr3R 18291927 18291941 11 82 1.0 1.0 1.0 5.5 97 chr3R 18291844 intron l(3)05822 - chr3R 18291892 intron l(3)05822 - chr3R 18291941 intron l(3)05822 - chr3R_11_18290001 chr3R_18290001 RAL-59 1000 chr3R 18434027 18434035 chr3R 18434106 18434114 4 79 0.5 0.0 0.2 3.3 87 chr3R 18434027 intron fru - chr3R 18434070 intron fru - chr3R 18434114 intron fru - chr3R_4_18430001 chr3R_18430001 RAL-59 1001 chr3R 18670389 18670411 chr3R 18670482 18670504 10 93 1.0 1.0 1.0 5.0 115 chr3R 18670389 intron CG7702 + chr3R 18670446 intron CG7702 + chr3R 18670504 intron CG7702 + chr3R_10_18670001 chr3R_18670001 RAL-59 1002 chr3R 18730029 18730036 chr3R 18730102 18730112 4 75 3.0 5.0 4.0 0.8 83 chr3R 18730029 intron Cha + chr3R 18730070 intron Cha + chr3R 18730112 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-59 1003 chr3R 18766777 18766801 chr3R 18766855 18766879 7 78 2.5 3.5 3.0 1.8 102 chr3R 18766777 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766879 intron CG7720 - chr3R_7_18765001 chr3R_18765001 RAL-59 1004 chr3R 18781696 18781726 chr3R 18781772 18781781 6 69 0.5 3.0 1.8 2.1 85 chr3R 18781696 intron CG7720 - chr3R 18781738 intron CG7720 - chr3R 18781781 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-59 1005 chr3R 18791509 18791518 chr3R 18791584 18791597 7 78 1.0 2.0 1.5 2.8 88 chr3R 18791509 intron CG7720 - chr3R 18791553 intron CG7720 - chr3R 18791597 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-59 1006 chr3R 18812074 18812108 chr3R 18812152 18812186 11 77 2.5 3.5 3.0 2.8 112 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-59 1007 chr3R 18826717 18826745 chr3R 18826922 18826947 10 204 6.0 3.0 4.5 1.8 230 chr3R 18826717 intron CG18208 - chr3R 18826832 intron CG18208 - chr3R 18826947 intron CG18208 - chr3R_10_18825001 chr3R_18825001 RAL-59 1008 chr3R 18836832 18836861 chr3R 18836942 18836971 9 110 3.0 2.5 2.8 2.4 139 chr3R 18836832 intron CG18208 - chr3R 18836902 intron CG18208 - chr3R 18836971 intron CG18208 - chr3R_9_18835001 chr3R_18835001 RAL-59 1009 chr3R 18862603 18862610 chr3R 18862688 18862695 5 85 0.0 3.0 1.5 2.0 92 chr3R 18862603 intergenic not near genes chr3R 18862649 intergenic not near genes chr3R 18862695 intergenic not near genes chr3R_5_18860001 chr3R_18860001 RAL-59 1010 chr3R 18888834 18888860 chr3R 18889169 18889195 16 334 3.5 2.5 3.0 4.0 361 chr3R 18888834 intergenic not near genes chr3R 18889014 intergenic not near genes chr3R 18889195 intergenic not near genes chr3R_16_18885001 chr3R_18885001 RAL-59 1011 chr3R 18891271 18891288 chr3R 18891397 18891414 5 126 2.0 7.0 4.5 0.9 143 chr3R 18891271 intergenic not near genes chr3R 18891342 intergenic not near genes chr3R 18891414 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-59 1012 chr3R 18957565 18957592 chr3R 18957842 18957870 9 277 1.5 3.5 2.5 2.6 305 chr3R 18957565 intron,intron CG42613 +,CG43732 + chr3R 18957718 intron,intron CG42613 +,CG43732 + chr3R 18957870 intron,intron CG42613 +,CG43732 + chr3R_9_18955001 chr3R_18955001 RAL-59 1013 chr3R 19079570 19079603 chr3R 19079654 19079685 9 84 5.0 4.0 4.5 1.6 115 chr3R 19079570 intron cdi - chr3R 19079628 intron cdi - chr3R 19079685 intron cdi - chr3R_9_19075001 chr3R_19075001 RAL-59 1014 chr3R 19109222 19109242 chr3R 19109334 19109354 8 112 6.5 1.5 4.0 1.6 132 chr3R 19109222 intron CG6040 + chr3R 19109288 intron CG6040 + chr3R 19109354 intron CG6040 + chr3R_8_19105001 chr3R_19105001 RAL-59 1015 chr3R 19193006 19193013 chr3R 19197310 19197311 F-element 5 4303 0.0 5.0 2.5 1.4 4305 chr3R 19193006 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197311 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-59 1016 chr3R 19248873 19248904 chr3R 19248952 19248984 6 80 4.0 0.0 2.0 2.0 111 chr3R 19248873 intergenic not near genes chr3R 19248928 intergenic not near genes chr3R 19248984 intergenic not near genes chr3R_6_19245001 chr3R_19245001 RAL-59 1017 chr3R 19290547 19290576 chr3R 19290622 19290652 9 76 1.5 0.5 1.0 4.5 105 chr3R 19290547 intergenic not near genes chr3R 19290600 intergenic not near genes chr3R 19290652 intergenic not near genes chr3R_9_19290001 chr3R_19290001 RAL-59 1018 chr3R 19437841 19437876 chr3R 19437963 19437999 13 122 5.0 2.0 3.5 2.9 158 chr3R 19437841 intron CG31221 + chr3R 19437920 intron CG31221 + chr3R 19437999 intron CG31221 + chr3R_13_19435001 chr3R_19435001 RAL-59 1019 chr3R 19500710 19500741 chr3R 19501043 19501074 7 332 2.5 0.5 1.5 2.8 364 chr3R 19500710 intron Dys + chr3R 19500892 intron Dys + chr3R 19501074 intron Dys + chr3R_7_19500001 chr3R_19500001 RAL-59 1020 chr3R 19598845 19598870 chr3R 19598974 19599000 5 128 3.5 5.0 4.2 1.0 155 chr3R 19598845 5` UTR Cpr92A - chr3R 19598922 5` UTR Cpr92A - chr3R 19599000 intergenic Cpr92A - chr3R_5_19595001 chr3R_19595001 RAL-59 1021 chr3R 20003021 20003037 chr3R 20003102 20003118 7 81 0.5 0.0 0.2 5.8 97 chr3R 20003021 intron Hs6st - chr3R 20003070 intron Hs6st - chr3R 20003118 intron Hs6st - chr3R_7_20000001 chr3R_20000001 RAL-59 1022 chr3R 20008820 20008850 chr3R 20008901 20008931 9 81 0.5 2.5 1.5 3.6 111 chr3R 20008820 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008931 intergenic MED25 +,Hs6st - chr3R_9_20005001 chr3R_20005001 RAL-59 1023 chr3R 20060637 20060655 chr3R 20060720 20060738 7 83 3.0 4.0 3.5 1.6 101 chr3R 20060637 intergenic not near genes chr3R 20060688 intergenic not near genes chr3R 20060738 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-59 1024 chr3R 20077039 20077069 chr3R 20077125 20077155 5 86 0.5 0.0 0.2 4.2 116 chr3R 20077039 intergenic not near genes chr3R 20077097 intergenic not near genes chr3R 20077155 intergenic not near genes chr3R_5_20075001 chr3R_20075001 RAL-59 1025 chr3R 20137190 20137225 chr3R 20137317 20137351 8 126 4.0 1.5 2.8 2.1 161 chr3R 20137190 intergenic not near genes chr3R 20137270 intergenic not near genes chr3R 20137351 intergenic not near genes chr3R_8_20135001 chr3R_20135001 RAL-59 1026 chr3R 20149608 20149625 chr3R 20151728 20151745 4 2121 12.5 31.5 22.0 0.2 2137 chr3R 20149608 intergenic not near genes chr3R 20150676 intergenic not near genes chr3R 20151745 intergenic not near genes chr3R_4_20150001 chr3R_20150001 RAL-59 1027 chr3R 20411218 20411242 chr3R 20411433 20411457 5 215 0.5 4.5 2.5 1.4 239 chr3R 20411218 intron Gfrl - chr3R 20411338 intron Gfrl - chr3R 20411457 intron Gfrl - chr3R_5_20410001 chr3R_20410001 RAL-59 1028 chr3R 20516551 20516568 chr3R 20516898 20516913 5 351 2.0 0.5 1.2 2.3 362 chr3R 20516551 intergenic not near genes chr3R 20516732 intergenic not near genes chr3R 20516913 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-59 1029 chr3R 20595606 20595634 chr3R 20595816 20595844 8 210 3.0 2.0 2.5 2.3 238 chr3R 20595606 intron bon + chr3R 20595725 intron bon + chr3R 20595844 intron bon + chr3R_8_20595001 chr3R_20595001 RAL-59 1030 chr3R 20686966 20686986 chr3R 20687401 20687421 7 435 3.0 1.0 2.0 2.3 455 chr3R 20686966 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687421 intergenic not near genes chr3R_7_20685001 chr3R_20685001 RAL-59 1031 chr3R 20722858 20722886 chr3R 20722984 20723013 7 127 5.0 3.5 4.2 1.3 155 chr3R 20722858 intergenic not near genes chr3R 20722936 intergenic not near genes chr3R 20723013 intergenic not near genes chr3R_7_20720001 chr3R_20720001 RAL-59 1032 chr3R 20724498 20724522 chr3R 20724588 20724612 9 89 5.0 9.0 7.0 1.1 114 chr3R 20724498 intergenic not near genes chr3R 20724555 intergenic not near genes chr3R 20724612 intergenic not near genes chr3R_9_20720001 chr3R_20720001 RAL-59 1033 chr3R 20735010 20735042 chr3R 20735093 20735124 4 84 3.0 3.5 3.2 1.0 114 chr3R 20735010 intergenic not near genes chr3R 20735067 intergenic not near genes chr3R 20735124 intergenic cdc2c + chr3R_4_20735001 chr3R_20735001 RAL-59 1034 chr3R 21014034 21014042 chr3R 21014112 21014120 4 78 2.0 1.5 1.8 1.4 86 chr3R 21014034 3` UTR Calx + chr3R 21014077 3` UTR Calx + chr3R 21014120 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-59 1035 chr3R 21141678 21141705 chr3R 21150159 21150171 Tirant 11 8477 5.0 4.5 4.8 1.9 8493 chr3R 21141678 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150171 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-59 1036 chr3R 21186027 21186060 chr3R 21186127 21186160 5 100 2.5 0.0 1.2 2.3 133 chr3R 21186027 intron SNF4Agamma + chr3R 21186094 intron SNF4Agamma + chr3R 21186160 intron SNF4Agamma + chr3R_5_21185001 chr3R_21185001 RAL-59 1037 chr3R 21239941 21239958 chr3R 21240017 21240022 8 73 0.0 2.0 1.0 4.0 81 chr3R 21239941 intergenic not near genes chr3R 21239982 intergenic not near genes chr3R 21240022 intergenic not near genes chr3R_8_21235001 chr3R_21235001 RAL-59 1038 chr3R 21287648 21287676 chr3R 21288000 21288028 10 352 2.0 2.5 2.2 3.1 380 chr3R 21287648 intron SIFaR - chr3R 21287838 intron SIFaR - chr3R 21288028 intron SIFaR - chr3R_10_21285001 chr3R_21285001 RAL-59 1039 chr3R 21472021 21472035 chr3R 21472101 21472116 5 81 2.5 2.5 2.5 1.4 95 chr3R 21472021 intergenic not near genes chr3R 21472068 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-59 1040 chr3R 21505223 21505255 chr3R 21505305 21505337 12 82 3.5 6.0 4.8 2.1 114 chr3R 21505223 intron C15 + chr3R 21505280 intron C15 + chr3R 21505337 intron C15 + chr3R_12_21505001 chr3R_21505001 RAL-59 1041 chr3R 21613449 21613476 chr3R 21613530 21613557 10 81 2.0 3.0 2.5 2.9 108 chr3R 21613449 intron InR - chr3R 21613503 intron InR - chr3R 21613557 intron InR - chr3R_10_21610001 chr3R_21610001 RAL-59 1042 chr3R 21641263 21641289 chr3R 21641337 21641365 7 75 2.0 4.5 3.2 1.7 102 chr3R 21641263 intron E2f - chr3R 21641314 intron E2f - chr3R 21641365 intron E2f - chr3R_7_21640001 chr3R_21640001 RAL-59 1043 chr3R 21733580 21733585 chr3R 21733652 21733665 6 78 23.5 18.0 20.8 0.3 85 chr3R 21733580 intergenic not near genes chr3R 21733622 intergenic not near genes chr3R 21733665 intergenic not near genes chr3R_6_21730001 chr3R_21730001 RAL-59 1044 chr3R 21761119 21761155 chr3R 21768511 21768540 mdg1 15 7389 2.0 7.0 4.5 2.7 7421 chr3R 21761119 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768540 exon CG42335 + chr3R_15_21760001 chr3R_21760001 RAL-59 1045 chr3R 21790962 21790986 chr3R 21791047 21791071 6 85 1.0 1.0 1.0 3.0 109 chr3R 21790962 intron CASK - chr3R 21791016 intron CASK - chr3R 21791071 intron CASK - chr3R_6_21790001 chr3R_21790001 RAL-59 1046 chr3R 21794458 21794486 chr3R 21794543 21794575 12 88 2.0 1.5 1.8 4.3 117 chr3R 21794458 intron CASK - chr3R 21794516 intron CASK - chr3R 21794575 intron CASK - chr3R_12_21790001 chr3R_21790001 RAL-59 1047 chr3R 8339246 8339247 chr3R 21907534 21907534 5 13568288 21.0 29.0 25.0 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-59 1048 chr3R 21907534 21907534 chr3R 28831801 28831802 6 6924268 27.5 19.5 23.5 0.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-59 1049 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 21.0 29.0 25.0 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-59 1050 chr3R 9620956 9620956 chr3R 21907535 21907535 5 12286579 5.5 29.0 17.2 0.3 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-59 1051 chr3R 21907535 21907535 chr3R 28831801 28831802 11 6924266 28.0 19.5 23.8 0.4 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-59 1052 chr3R 21907536 21907536 chr3R 28831801 28831802 8 6924266 27.5 19.5 23.5 0.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_8_25365001 chr3R_25365001 RAL-59 1053 chr3R 21924017 21924039 chr3R 21924100 21924129 4 88 2.5 0.0 1.2 1.8 112 chr3R 21924017 intergenic not near genes chr3R 21924073 intergenic not near genes chr3R 21924129 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-59 1054 chr3R 21952136 21952166 chr3R 21952221 21952251 5 85 0.0 2.0 1.0 2.5 115 chr3R 21952136 intron Eip93F + chr3R 21952194 intron Eip93F + chr3R 21952251 intron Eip93F + chr3R_5_21950001 chr3R_21950001 RAL-59 1055 chr3R 21958602 21958636 chr3R 21958692 21958726 8 90 0.5 0.0 0.2 6.7 124 chr3R 21958602 intron Eip93F + chr3R 21958664 intron Eip93F + chr3R 21958726 intron Eip93F + chr3R_8_21955001 chr3R_21955001 RAL-59 1056 chr3R 22116416 22116430 chr3R 22116783 22116797 4 367 1.0 1.5 1.2 1.8 381 chr3R 22116416 exon Ir94b - chr3R 22116606 exon Ir94b - chr3R 22116797 exon Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-59 1057 chr3R 22292483 22292504 chr3R 22292563 22292584 8 80 4.0 2.5 3.2 1.9 101 chr3R 22292483 intron SKIP + chr3R 22292534 intron SKIP + chr3R 22292584 intron SKIP + chr3R_8_22290001 chr3R_22290001 RAL-59 1058 chr3R 22428579 22428609 chr3R 22428655 22428685 9 76 2.0 2.0 2.0 3.0 106 chr3R 22428579 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-59 1059 chr3R 22450542 22450578 chr3R 22453182 22453218 NOF 12 2640 4.0 4.5 4.2 2.3 2676 chr3R 22450542 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_12_22450001 chr3R_22450001 RAL-59 1060 chr3R 22492381 22492415 chr3R 22492461 22492496 11 81 1.5 3.0 2.2 3.4 115 chr3R 22492381 3` UTR CG7045 + chr3R 22492438 intergenic CG7045 + chr3R 22492496 intergenic CG7045 +,CG7046 + chr3R_11_22490001 chr3R_22490001 RAL-59 1061 chr3R 22538442 22538472 chr3R 22538527 22538557 12 85 3.0 2.0 2.5 3.4 115 chr3R 22538442 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538557 intron CG5326 - chr3R_12_22535001 chr3R_22535001 RAL-59 1062 chr3R 22769094 22769121 chr3R 22769171 22769198 9 77 0.0 1.5 0.8 5.0 104 chr3R 22769094 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-59 1063 chr3R 22797758 22797938 chr3R 22797844 22798034 17 89 0.0 0.0 0.0 17.0 276 chr3R 22797758 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_17_22795001 chr3R_22795001 RAL-59 1064 chr3R 22860159 22860173 chr3R 22860251 22860265 6 92 3.0 3.0 3.0 1.5 106 chr3R 22860159 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860265 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-59 1065 chr3R 22881204 22881219 chr3R 22884910 22884925 Doc 5 3706 0.0 1.5 0.8 2.8 3721 chr3R 22881204 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-59 1066 chr3R 22919157 22919186 chr3R 22919254 22919281 15 96 3.5 4.5 4.0 3.0 124 chr3R 22919157 intron klg + chr3R 22919219 intron klg + chr3R 22919281 intron klg + chr3R_15_22915001 chr3R_22915001 RAL-59 1067 chr3R 22927870 22927906 chr3R 22927965 22928001 15 94 4.5 8.5 6.5 2.0 131 chr3R 22927870 intron klg + chr3R 22927936 intron klg + chr3R 22928001 intron klg + chr3R_15_22925001 chr3R_22925001 RAL-59 1068 chr3R 22990351 22990386 chr3R 22990606 22990641 14 253 2.5 5.5 4.0 2.8 290 chr3R 22990351 intron,exon Nha2 -,Or94b + chr3R 22990496 intron,intron Nha2 -,Or94b + chr3R 22990641 intron Nha2 - chr3R_14_22990001 chr3R_22990001 RAL-59 1069 chr3R 23016204 23016219 chr3R 23016281 23016296 8 77 2.0 5.5 3.8 1.7 92 chr3R 23016204 intergenic not near genes chr3R 23016250 intergenic not near genes chr3R 23016296 intergenic not near genes chr3R_8_23015001 chr3R_23015001 RAL-59 1070 chr3R 23180185 23180218 chr3R 23180268 23180301 11 83 1.0 3.0 2.0 3.7 116 chr3R 23180185 intron Irk1 + chr3R 23180243 intron Irk1 + chr3R 23180301 intron Irk1 + chr3R_11_23180001 chr3R_23180001 RAL-59 1071 chr3R 23182688 23182706 chr3R 23182771 23182789 6 83 0.5 2.0 1.2 2.7 101 chr3R 23182688 intron Irk1 + chr3R 23182738 intron Irk1 + chr3R 23182789 intron Irk1 + chr3R_6_23180001 chr3R_23180001 RAL-59 1072 chr3R 23277348 23277372 chr3R 23277438 23277460 6 88 2.5 2.5 2.5 1.7 112 chr3R 23277348 intron orb - chr3R 23277404 intron orb - chr3R 23277460 intron orb - chr3R_6_23275001 chr3R_23275001 RAL-59 1073 chr3R 23338900 23338918 chr3R 23338973 23338990 6 74 5.5 3.0 4.2 1.2 90 chr3R 23338900 intron pnt - chr3R 23338945 intron pnt - chr3R 23338990 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-59 1074 chr3R 23342637 23342669 chr3R 23342772 23342804 15 135 3.0 3.0 3.0 3.8 167 chr3R 23342637 intron pnt - chr3R 23342720 intron pnt - chr3R 23342804 intron pnt - chr3R_15_23340001 chr3R_23340001 RAL-59 1075 chr3R 23533530 23533545 chr3R 23533622 23533637 4 92 7.5 14.0 10.8 0.3 107 chr3R 23533530 exon CG10170 - chr3R 23533584 exon CG10170 - chr3R 23533637 exon CG10170 - chr3R_4_23530001 chr3R_23530001 RAL-59 1076 chr3R 23557874 23557896 chr3R 23557952 23557973 7 78 2.0 2.5 2.2 2.2 99 chr3R 23557874 intron beat-IV + chr3R 23557924 intron beat-IV + chr3R 23557973 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-59 1077 chr3R 23558399 23558427 chr3R 23560180 23560208 Bari1 4 1781 1.5 1.5 1.5 1.6 1809 chr3R 23558399 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-59 1078 chr3R 23572756 23572774 chr3R 23572876 23572892 6 120 3.5 4.0 3.8 1.2 136 chr3R 23572756 intron beat-IV + chr3R 23572824 intron beat-IV + chr3R 23572892 intron beat-IV + chr3R_6_23570001 chr3R_23570001 RAL-59 1079 chr3R 23608571 23608608 chr3R 23608699 23608736 14 126 4.5 2.0 3.2 3.3 165 chr3R 23608571 intron CG31145 - chr3R 23608654 intron CG31145 - chr3R 23608736 exon CG31145 - chr3R_14_23605001 chr3R_23605001 RAL-59 1080 chr3R 23684706 23684729 chr3R 23685192 23685215 roo 6 482 1.5 7.0 4.2 1.2 509 chr3R 23684706 intron CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685215 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-59 1081 chr3R 23688478 23688504 chr3R 23688567 23688589 7 90 2.5 5.5 4.0 1.4 111 chr3R 23688478 intergenic SPE + chr3R 23688534 intergenic SPE +,CG10254 - chr3R 23688589 intergenic CG10254 -,SPE + chr3R_7_23685001 chr3R_23685001 RAL-59 1082 chr3R 23820635 23820668 chr3R 23820719 23820752 10 84 2.5 2.0 2.2 3.1 117 chr3R 23820635 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820752 5` UTR CG34355 + chr3R_10_23820001 chr3R_23820001 RAL-59 1083 chr3R 23944919 23944934 chr3R 23945003 23945019 6 84 1.5 4.5 3.0 1.5 100 chr3R 23944919 intron CG12268 - chr3R 23944969 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-59 1084 chr3R 24025585 24025603 chr3R 24025664 24025677 5 76 3.0 3.5 3.2 1.2 92 chr3R 24025585 intron KrT95D - chr3R 24025631 intron KrT95D - chr3R 24025677 intron KrT95D - chr3R_5_24025001 chr3R_24025001 RAL-59 1085 chr3R 24072088 24072119 chr3R 24072526 24072538 jockey 13 436 5.5 6.5 6.0 1.9 450 chr3R 24072088 intron 4EHP - chr3R 24072313 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_13_24070001 chr3R_24070001 RAL-59 1086 chr3R 24076919 24076948 chr3R 24078386 24078415 hobo 9 1466 0.5 3.0 1.8 3.2 1496 chr3R 24076919 intron 4EHP - chr3R 24077667 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-59 1087 chr3R 24100595 24100611 chr3R 24100819 24100835 4 224 2.0 1.5 1.8 1.4 240 chr3R 24100595 intron 4EHP - chr3R 24100715 intron 4EHP - chr3R 24100835 intron 4EHP - chr3R_4_24100001 chr3R_24100001 RAL-59 1088 chr3R 24207218 24207246 chr3R 24212294 24212322 flea 9 5076 3.5 2.0 2.8 2.4 5104 chr3R 24207218 intron twin - chr3R 24209770 intron twin - chr3R 24212322 intron twin - chr3R_9_24205001 chr3R_24205001 RAL-59 1089 chr3R 21907535 21907535 chr3R 24389465 24389465 5 2481930 28.0 4.0 16.0 0.3 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-59 1090 chr3R 24431606 24431627 chr3R 24431684 24431706 4 79 1.0 1.0 1.0 2.0 100 chr3R 24431606 intron nAChRalpha1 - chr3R 24431656 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-59 1091 chr3R 24433476 24433504 chr3R 24433555 24433583 8 79 0.0 5.5 2.8 2.1 107 chr3R 24433476 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433583 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-59 1092 chr3R 24730091 24730101 chr3R 24732469 24732471 Doc 4 2375 5.0 0.5 2.8 1.1 2380 chr3R 24730091 intron tok + chr3R 24731281 intron tok + chr3R 24732471 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-59 1093 chr3R 24730103 24730118 chr3R 24732466 24732471 Doc 4 2367 3.5 0.5 2.0 1.3 2368 chr3R 24730103 intron tok + chr3R 24731287 intron tok + chr3R 24732471 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-59 1094 chr3R 24927125 24927163 chr3R 24931916 24931954 Doc 7 4791 2.0 2.0 2.0 2.3 4829 chr3R 24927125 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-59 1095 chr3R 24957490 24957514 chr3R 24957570 24957594 5 80 4.0 3.0 3.5 1.1 104 chr3R 24957490 intergenic not near genes chr3R 24957542 intergenic not near genes chr3R 24957594 intergenic not near genes chr3R_5_24955001 chr3R_24955001 RAL-59 1096 chr3R 24974913 24974936 chr3R 24974991 24975015 7 79 3.5 5.0 4.2 1.3 102 chr3R 24974913 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975015 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-59 1097 chr3R 25004903 25004912 chr3R 25004986 25004995 4 83 0.0 3.0 1.5 1.6 92 chr3R 25004903 intron tnc + chr3R 25004949 intron tnc + chr3R 25004995 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-59 1098 chr3R 25178402 25178436 chr3R 25178490 25178502 10 85 5.0 7.5 6.2 1.4 100 chr3R 25178402 intron lobo - chr3R 25178452 intron lobo - chr3R 25178502 intron lobo - chr3R_10_25175001 chr3R_25175001 RAL-59 1099 chr3R 25302682 25302707 chr3R 25302931 25302956 7 249 0.0 6.0 3.0 1.8 274 chr3R 25302682 exon CG31370 + chr3R 25302819 exon CG31370 + chr3R 25302956 exon CG31370 + chr3R_7_25300001 chr3R_25300001 RAL-59 1100 chr3R 25328983 25329014 chr3R 25329461 25329493 14 478 3.0 3.0 3.0 3.5 510 chr3R 25328983 exon CHKov1 - chr3R 25329238 5` UTR CHKov1 - chr3R 25329493 intergenic CHKov2 -,CHKov1 - chr3R_14_25325001 chr3R_25325001 RAL-59 1101 chr3R 25362207 25362222 chr3R 25362403 25362418 6 196 4.5 8.5 6.5 0.8 211 chr3R 25362207 intron Fur1 - chr3R 25362312 intron Fur1 - chr3R 25362418 intron Fur1 - chr3R_6_25360001 chr3R_25360001 RAL-59 1102 chr3R 25377088 25377120 chr3R 25377354 25377386 6 264 5.0 0.0 2.5 1.7 298 chr3R 25377088 intron Fur1 - chr3R 25377237 intron Fur1 - chr3R 25377386 intron Fur1 - chr3R_6_25375001 chr3R_25375001 RAL-59 1103 chr3R 25422065 25422096 chr3R 25422146 25422177 5 81 0.5 0.0 0.2 4.2 112 chr3R 25422065 intron Fur1 - chr3R 25422121 intron Fur1 - chr3R 25422177 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-59 1104 chr3R 25528037 25528046 chr3R 25528140 25528149 6 103 7.5 1.0 4.2 1.2 112 chr3R 25528037 intron msi + chr3R 25528093 intron msi + chr3R 25528149 intron msi + chr3R_6_25525001 chr3R_25525001 RAL-59 1105 chr3R 25669063 25669097 chr3R 25669157 25669191 5 94 0.5 4.5 2.5 1.4 128 chr3R 25669063 intron Lgr3 + chr3R 25669127 intron Lgr3 + chr3R 25669191 intron Lgr3 + chr3R_5_25665001 chr3R_25665001 RAL-59 1106 chr3R 25689137 25689164 chr3R 25689244 25689272 9 108 4.5 8.0 6.2 1.2 135 chr3R 25689137 intergenic not near genes chr3R 25689204 intergenic not near genes chr3R 25689272 intergenic not near genes chr3R_9_25685001 chr3R_25685001 RAL-59 1107 chr3R 25716376 25716395 chr3R 25716454 25716473 5 78 2.0 0.5 1.2 2.3 97 chr3R 25716376 intron LpR2 - chr3R 25716424 intron LpR2 - chr3R 25716473 intron LpR2 - chr3R_5_25715001 chr3R_25715001 RAL-59 1108 chr3R 25765876 25765911 chr3R 25765954 25765989 16 78 2.5 7.0 4.8 2.8 113 chr3R 25765876 intergenic not near genes chr3R 25765932 intergenic not near genes chr3R 25765989 intergenic not near genes chr3R_16_25765001 chr3R_25765001 RAL-59 1109 chr3R 25832692 25832723 chr3R 25841874 25841905 roo 11 9182 2.0 10.0 6.0 1.6 9213 chr3R 25832692 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_11_25835001 chr3R_25835001 RAL-59 1110 chr3R 26015701 26015731 chr3R 26015788 26015818 5 87 4.0 1.0 2.5 1.4 117 chr3R 26015701 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015760 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015818 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R_5_26015001 chr3R_26015001 RAL-59 1111 chr3R 26093844 26093875 chr3R 26093921 26093921 12 75 3.5 2.5 3.0 3.0 77 chr3R 26093844 intron dys - chr3R 26093882 intron dys - chr3R 26093921 intron dys - chr3R_12_26090001 chr3R_26090001 RAL-59 1112 chr3R 26121953 26121978 chr3R 26122050 26122075 8 97 0.0 2.0 1.0 4.0 122 chr3R 26121953 intron CG31324 + chr3R 26122014 intron CG31324 + chr3R 26122075 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-59 1113 chr3R 26126281 26126291 chr3R 26126386 26126396 4 105 2.5 0.5 1.5 1.6 115 chr3R 26126281 intron CG31324 + chr3R 26126338 intron CG31324 + chr3R 26126396 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-59 1114 chr3R 26265817 26265842 chr3R 26265905 26265930 8 87 2.5 5.0 3.8 1.7 113 chr3R 26265817 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265930 intron CG6154 + chr3R_8_26265001 chr3R_26265001 RAL-59 1115 chr3R 26314653 26314668 chr3R 26314798 26314812 4 145 6.0 1.5 3.8 0.8 159 chr3R 26314653 intergenic not near genes chr3R 26314732 intergenic not near genes chr3R 26314812 intergenic not near genes chr3R_4_26310001 chr3R_26310001 RAL-59 1116 chr3R 26325685 26325701 chr3R 26325771 26325789 10 87 3.5 6.0 4.8 1.7 104 chr3R 26325685 intron CG33970 + chr3R 26325737 intron CG33970 + chr3R 26325789 intron CG33970 + chr3R_10_26325001 chr3R_26325001 RAL-59 1117 chr3R 26338338 26338351 chr3R 26338431 26338444 4 93 3.5 2.5 3.0 1.0 106 chr3R 26338338 intron CG33970 + chr3R 26338391 intron CG33970 + chr3R 26338444 intron CG33970 + chr3R_4_26335001 chr3R_26335001 RAL-59 1118 chr3R 26376326 26376352 chr3R 26385485 26385511 roo 4 9159 3.5 0.0 1.8 1.4 9185 chr3R 26376326 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385511 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-59 1119 chr3R 26425874 26425910 chr3R 26425958 26425994 10 83 4.5 4.5 4.5 1.8 120 chr3R 26425874 intron CR31084 + chr3R 26425934 intron CR31084 + chr3R 26425994 intron CR31084 + chr3R_10_26425001 chr3R_26425001 RAL-59 1120 chr3R 26450516 26450549 chr3R 26450614 26450647 6 98 1.5 2.5 2.0 2.0 131 chr3R 26450516 exon Hex-t1 + chr3R 26450582 3` UTR Hex-t1 + chr3R 26450647 intergenic Hex-t2 +,Hex-t1 + chr3R_6_26450001 chr3R_26450001 RAL-59 1121 chr3R 26553208 26553239 chr3R 26553710 26553742 12 502 4.5 0.5 2.5 3.4 534 chr3R 26553208 intron scrib + chr3R 26553475 intron scrib + chr3R 26553742 intron scrib + chr3R_12_26550001 chr3R_26550001 RAL-59 1122 chr3R 26558326 26558357 chr3R 26565638 26565669 Stalker4 6 7311 3.0 2.5 2.8 1.6 7343 chr3R 26558326 intron scrib + chr3R 26561998 intron scrib + chr3R 26565669 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-59 1123 chr3R 26607743 26607770 chr3R 26607819 26607846 13 76 3.0 0.5 1.8 4.6 103 chr3R 26607743 5` UTR CR44951 + chr3R 26607794 5` UTR CR44951 + chr3R 26607846 5` UTR CR44951 + chr3R_13_26605001 chr3R_26605001 RAL-59 1124 chr3R 26641646 26641664 chr3R 26641728 26641751 6 86 0.5 5.5 3.0 1.5 105 chr3R 26641646 intergenic not near genes chr3R 26641698 intergenic not near genes chr3R 26641751 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-59 1125 chr3R 26642753 26642760 chr3R 26643147 26643154 jockey 4 394 0.0 3.0 1.5 1.6 401 chr3R 26642753 intergenic not near genes chr3R 26642954 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-59 1126 chr3R 26660645 26660679 chr3R 26660729 26660756 16 81 3.5 4.5 4.0 3.2 111 chr3R 26660645 intron beat-VII - chr3R 26660700 intron beat-VII - chr3R 26660756 intron beat-VII - chr3R_16_26660001 chr3R_26660001 RAL-59 1127 chr3R 26695568 26695592 chr3R 26695677 26695697 9 107 3.5 3.5 3.5 2.0 129 chr3R 26695568 intergenic not near genes chr3R 26695632 intergenic not near genes chr3R 26695697 intergenic not near genes chr3R_9_26695001 chr3R_26695001 RAL-59 1128 chr3R 26750929 26750943 chr3R 26751056 26751061 4 125 1.0 0.0 0.5 2.7 132 chr3R 26750929 intergenic not near genes chr3R 26750995 intergenic not near genes chr3R 26751061 intergenic not near genes chr3R_4_26750001 chr3R_26750001 RAL-59 1129 chr3R 26770245 26770268 chr3R 26770322 26770345 5 77 2.0 2.0 2.0 1.7 100 chr3R 26770245 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770345 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-59 1130 chr3R 26810551 26810586 chr3R 26811036 26811070 roo 5 485 1.0 3.5 2.2 1.6 519 chr3R 26810551 intron Tl + chr3R 26810810 intron Tl + chr3R 26811070 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-59 1131 chr3R 26854786 26854811 chr3R 26855289 26855318 9 506 2.0 5.0 3.5 2.0 532 chr3R 26854786 intron Lerp - chr3R 26855052 intron Lerp - chr3R 26855318 intron Lerp - chr3R_9_26855001 chr3R_26855001 RAL-59 1132 chr3R 26857894 26857907 chr3R 26857965 26857993 9 85 3.5 4.5 4.0 1.8 99 chr3R 26857894 intron Lerp - chr3R 26857944 intron Lerp - chr3R 26857993 intron Lerp - chr3R_9_26855001 chr3R_26855001 RAL-59 1133 chr3R 27140517 27140548 chr3R 27148126 27148158 412 9 7610 5.0 3.5 4.2 1.7 7641 chr3R 27140517 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-59 1134 chr3R 27241402 27241425 chr3R 27244703 27244729 12 3301 33.5 32.0 32.8 0.4 3327 chr3R 27241402 exon CG17991 + chr3R 27243066 exon CG18766 - chr3R 27244729 intron CG18766 - chr3R_12_27240001 chr3R_27240001 RAL-59 1135 chr3R 27245607 27245614 chr3R 27245685 27245705 4 88 5.5 4.5 5.0 0.7 98 chr3R 27245607 intergenic CG18766 - chr3R 27245656 intergenic CG18766 - chr3R 27245705 intergenic CG18766 - chr3R_4_27245001 chr3R_27245001 RAL-59 1136 chr3R 27315994 27316013 chr3R 27316070 27316089 6 76 5.0 4.0 4.5 1.1 95 chr3R 27315994 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316089 exon CG3339 - chr3R_6_27315001 chr3R_27315001 RAL-59 1137 chr3R 27342800 27342823 chr3R 27351381 27351404 Tirant 4 8581 0.0 4.5 2.2 1.2 8604 chr3R 27342800 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351404 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-59 1138 chr3R 27393678 27393708 chr3R 27393960 27393982 8 281 1.5 3.0 2.2 2.5 304 chr3R 27393678 intron side - chr3R 27393830 intron side - chr3R 27393982 intron side - chr3R_8_27390001 chr3R_27390001 RAL-59 1139 chr3R 27399568 27399600 chr3R 27399646 27399671 6 74 3.0 4.0 3.5 1.3 103 chr3R 27399568 intron side - chr3R 27399620 intron side - chr3R 27399671 intron side - chr3R_6_27395001 chr3R_27395001 RAL-59 1140 chr3R 27457866 27457889 chr3R 27457958 27457981 6 92 5.0 0.0 2.5 1.7 115 chr3R 27457866 intergenic not near genes chr3R 27457924 intergenic not near genes chr3R 27457981 intergenic not near genes chr3R_6_27455001 chr3R_27455001 RAL-59 1141 chr3R 27492382 27492402 chr3R 27492469 27492489 6 86 2.5 0.5 1.5 2.4 107 chr3R 27492382 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492489 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-59 1142 chr3R 27496594 27496602 chr3R 27496699 27496707 5 105 6.0 2.0 4.0 1.0 113 chr3R 27496594 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496707 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-59 1143 chr3R 27595055 27595084 chr3R 27595137 27595166 8 82 3.0 3.5 3.2 1.9 111 chr3R 27595055 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595166 intron CG5639 - chr3R_8_27595001 chr3R_27595001 RAL-59 1144 chr3R 27619702 27619729 chr3R 27619817 27619844 9 115 3.0 4.0 3.5 2.0 142 chr3R 27619702 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619844 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-59 1145 chr3R 27622245 27622260 chr3R 27622326 27622355 6 92 1.5 1.5 1.5 2.4 110 chr3R 27622245 intron Tusp + chr3R 27622300 intron Tusp + chr3R 27622355 intron Tusp + chr3R_6_27620001 chr3R_27620001 RAL-59 1146 chr3R 27627085 27627119 chr3R 27627187 27627212 16 99 5.0 2.5 3.8 3.3 127 chr3R 27627085 intron Tusp + chr3R 27627148 intron Tusp + chr3R 27627212 intron Tusp + chr3R_16_27625001 chr3R_27625001 RAL-59 1147 chr3R 27856760 27856793 chr3R 27858243 27858276 hopper2 9 1483 1.5 0.5 1.0 4.5 1516 chr3R 27856760 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-59 1148 chr3R 27875700 27875730 chr3R 27882755 27882785 297 5 7055 2.0 0.5 1.2 2.3 7085 chr3R 27875700 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-59 1149 chr3R 28102570 28102603 chr3R 28102807 28102837 12 237 2.5 4.0 3.2 2.9 267 chr3R 28102570 intergenic not near genes chr3R 28102704 intergenic not near genes chr3R 28102837 intergenic not near genes chr3R_12_28100001 chr3R_28100001 RAL-59 1150 chr3R 28103328 28103358 chr3R 28103421 28103450 8 93 2.5 3.5 3.0 2.0 122 chr3R 28103328 intergenic not near genes chr3R 28103389 intergenic not near genes chr3R 28103450 intergenic not near genes chr3R_8_28100001 chr3R_28100001 RAL-59 1151 chr3R 28118579 28118874 chr3R 28118710 28118955 15 111 4.5 3.5 4.0 3.0 376 chr3R 28118579 intergenic not near genes chr3R 28118767 intergenic not near genes chr3R 28118955 intergenic not near genes chr3R_15_28115001 chr3R_28115001 RAL-59 1152 chr3R 28130068 28130098 chr3R 28130182 28130212 6 114 1.0 2.0 1.5 2.4 144 chr3R 28130068 intergenic not near genes chr3R 28130140 intergenic not near genes chr3R 28130212 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-59 1153 chr3R 28169845 28169872 chr3R 28170029 28170056 6 185 4.0 4.0 4.0 1.2 211 chr3R 28169845 intron CG34354 + chr3R 28169950 intron CG34354 + chr3R 28170056 intron CG34354 + chr3R_6_28165001 chr3R_28165001 RAL-59 1154 chr3R 28173668 28173704 chr3R 28181098 28181134 mdg1 4 7430 1.0 1.0 1.0 2.0 7466 chr3R 28173668 intron CG34354 + chr3R 28177401 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-59 1155 chr3R 28201829 28201848 chr3R 28201924 28201947 8 95 4.0 3.5 3.8 1.7 118 chr3R 28201829 intron CG34354 + chr3R 28201888 intron CG34354 + chr3R 28201947 intron CG34354 + chr3R_8_28200001 chr3R_28200001 RAL-59 1156 chr3R 28233773 28233811 chr3R 28234009 28234047 8 236 0.5 1.5 1.0 4.0 274 chr3R 28233773 intron CG34354 + chr3R 28233910 intron CG34354 + chr3R 28234047 intron CG34354 + chr3R_8_28230001 chr3R_28230001 RAL-59 1157 chr3R 28253337 28253372 chr3R 28255847 28255881 jockey 10 2510 2.0 2.0 2.0 3.3 2544 chr3R 28253337 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_10_28250001 chr3R_28250001 RAL-59 1158 chr3R 28276675 28276701 chr3R 28276760 28276788 9 86 1.5 1.0 1.2 4.1 113 chr3R 28276675 intergenic not near genes chr3R 28276732 intergenic not near genes chr3R 28276788 intergenic not near genes chr3R_9_28275001 chr3R_28275001 RAL-59 1159 chr3R 28283012 28283017 chr3R 28283641 28283646 4 629 2.5 5.0 3.8 0.8 634 chr3R 28283012 exon CG34436 + chr3R 28283329 exon CG34436 + chr3R 28283646 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-59 1160 chr3R 28351968 28351991 chr3R 28352044 28352067 6 76 1.5 2.5 2.0 2.0 99 chr3R 28351968 intergenic Or98b + chr3R 28352018 intergenic Or98b + chr3R 28352067 intergenic Or98b + chr3R_6_28350001 chr3R_28350001 RAL-59 1161 chr3R 28382157 28382168 chr3R 28382238 28382250 5 81 3.0 6.5 4.8 0.9 93 chr3R 28382157 intergenic not near genes chr3R 28382204 intergenic not near genes chr3R 28382250 intergenic not near genes chr3R_5_28380001 chr3R_28380001 RAL-59 1162 chr3R 28425187 28425217 chr3R 28425266 28425296 12 79 4.0 2.5 3.2 2.9 109 chr3R 28425187 intron beat-VI + chr3R 28425242 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_12_28425001 chr3R_28425001 RAL-59 1163 chr3R 28792877 28792900 chr3R 28797972 28797993 jockey 6 5095 1.0 4.0 2.5 1.7 5116 chr3R 28792877 intergenic not near genes chr3R 28795435 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-59 1164 chr3R 28827688 28827709 chr3R 28827844 28827865 6 156 1.5 4.0 2.8 1.6 177 chr3R 28827688 intron WASp - chr3R 28827776 intron WASp - chr3R 28827865 intron WASp - chr3R_6_28825001 chr3R_28825001 RAL-59 1165 chr3R 21907534 21907536 chr3R 28831799 28831802 29 6924266 27.5 20.5 24.0 1.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-59 1166 chr3R 28845981 28846006 chr3R 28846071 28846096 4 89 1.5 2.0 1.8 1.4 115 chr3R 28845981 exon spg + chr3R 28846038 intron spg + chr3R 28846096 intron spg + chr3R_4_28845001 chr3R_28845001 RAL-59 1167 chr3R 28960508 28960534 chr3R 28960593 28960619 4 85 1.5 0.0 0.8 2.2 111 chr3R 28960508 intron CG14521 - chr3R 28960564 intron CG14521 - chr3R 28960619 intron CG14521 - chr3R_4_28960001 chr3R_28960001 RAL-59 1168 chr3R 29067634 29067643 chr3R 29067782 29067791 5 148 3.5 0.5 2.0 1.7 157 chr3R 29067634 intron CG11873 + chr3R 29067712 intron CG11873 + chr3R 29067791 intron CG11873 + chr3R_5_29065001 chr3R_29065001 RAL-59 1169 chr3R 29079390 29079404 chr3R 29080762 29080776 NOF 5 1372 1.5 4.0 2.8 1.3 1386 chr3R 29079390 intron CG11873 + chr3R 29080083 intron CG11873 + chr3R 29080776 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-59 1170 chr3R 29213059 29213091 chr3R 29213142 29213174 11 82 2.5 2.5 2.5 3.1 115 chr3R 29213059 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-59 1171 chr3R 29237251 29237285 chr3R 29239272 29239306 14 2021 17.0 5.5 11.2 1.1 2055 chr3R 29237251 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_14_29235001 chr3R_29235001 RAL-59 1172 chr3R 29239223 29239244 chr3R 29245514 29245535 5 6291 4.5 23.0 13.8 0.3 6312 chr3R 29239223 exon CG31427 - chr3R 29242379 exon CG31445 - chr3R 29245535 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-59 1173 chr3R 29384848 29384877 chr3R 29384972 29385001 10 120 2.5 7.0 4.8 1.7 153 chr3R 29384848 intron Ptp99A + chr3R 29384924 intron Ptp99A + chr3R 29385001 intron Ptp99A + chr3R_10_29380001 chr3R_29380001 RAL-59 1174 chr3R 29406614 29406645 chr3R 29407898 29407931 jockey 10 1284 4.5 4.5 4.5 1.8 1317 chr3R 29406614 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-59 1175 chr3R 29472011 29472038 chr3R 29472104 29472128 6 92 3.0 3.5 3.2 1.4 117 chr3R 29472011 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472128 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-59 1176 chr3R 29505892 29505926 chr3R 29505969 29506003 7 75 0.0 3.5 1.8 2.5 111 chr3R 29505892 intergenic not near genes chr3R 29505948 intergenic not near genes chr3R 29506003 intergenic not near genes chr3R_7_29505001 chr3R_29505001 RAL-59 1177 chr3R 29539431 29539459 chr3R 29539507 29539535 12 75 2.0 0.0 1.0 6.0 104 chr3R 29539431 intergenic not near genes chr3R 29539483 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_12_29535001 chr3R_29535001 RAL-59 1178 chr3R 29549042 29549063 chr3R 29549286 29549316 7 252 3.5 3.0 3.2 1.7 274 chr3R 29549042 intergenic not near genes chr3R 29549179 intergenic not near genes chr3R 29549316 intergenic not near genes chr3R_7_29545001 chr3R_29545001 RAL-59 1179 chr3R 29590378 29590402 chr3R 29590471 29590494 19 93 3.0 5.0 4.0 3.8 116 chr3R 29590378 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590494 intron CG31041 - chr3R_19_29590001 chr3R_29590001 RAL-59 1180 chr3R 29615089 29615113 chr3R 29615169 29615195 8 80 3.5 3.5 3.5 1.8 106 chr3R 29615089 intron alph + chr3R 29615142 intron alph + chr3R 29615195 intron alph + chr3R_8_29615001 chr3R_29615001 RAL-59 1181 chr3R 29627565 29627577 chr3R 29627654 29627662 6 89 8.0 3.5 5.8 0.9 97 chr3R 29627565 intergenic not near genes chr3R 29627614 intergenic not near genes chr3R 29627662 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-59 1182 chr3R 29627578 29627595 chr3R 29627651 29627686 5 87 5.0 3.0 4.0 1.0 108 chr3R 29627578 intergenic not near genes chr3R 29627632 intergenic not near genes chr3R 29627686 intergenic not near genes chr3R_5_29625001 chr3R_29625001 RAL-59 1183 chr3R 29738270 29738301 chr3R 29739733 29739768 hobo 9 1466 0.5 2.0 1.2 4.1 1498 chr3R 29738270 intergenic CG1969 +,CG7598 + chr3R 29739019 intron CG1969 + chr3R 29739768 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-59 1184 chr3R 29769696 29769713 chr3R 29769778 29769795 4 82 2.0 2.5 2.2 1.2 99 chr3R 29769696 intron kay + chr3R 29769746 intron kay + chr3R 29769795 intron kay + chr3R_4_29765001 chr3R_29765001 RAL-59 1185 chr3R 29880589 29880606 chr3R 29880668 29880672 6 78 5.5 0.5 3.0 1.5 83 chr3R 29880589 intron CG31038 + chr3R 29880630 intron CG31038 + chr3R 29880672 intron CG31038 + chr3R_6_29880001 chr3R_29880001 RAL-59 1186 chr3R 29880609 29880619 chr3R 29880666 29880704 10 69 4.5 0.5 2.5 2.9 95 chr3R 29880609 intron CG31038 + chr3R 29880656 intron CG31038 + chr3R 29880704 intron CG31038 + chr3R_10_29880001 chr3R_29880001 RAL-59 1187 chr3R 29923609 29923640 chr3R 29925456 29925487 7 1847 6.0 30.5 18.2 0.4 1878 chr3R 29923609 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924548 exon Jon99Cii - chr3R 29925487 exon Jon99Ci - chr3R_7_29920001 chr3R_29920001 RAL-59 1188 chr3R 29950576 29950594 chr3R 29950652 29950671 5 77 2.0 2.5 2.2 1.6 95 chr3R 29950576 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950671 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-59 1189 chr3R 29963481 29963511 chr3R 29963579 29963613 7 101 0.5 3.0 1.8 2.5 132 chr3R 29963481 intron TkR99D - chr3R 29963547 intron TkR99D - chr3R 29963613 intron TkR99D - chr3R_7_29960001 chr3R_29960001 RAL-59 1190 chr3R 30013685 30013706 chr3R 30013767 30013789 8 83 1.0 1.5 1.2 3.6 104 chr3R 30013685 intron CG7920 - chr3R 30013737 intron CG7920 - chr3R 30013789 intron CG7920 - chr3R_8_30010001 chr3R_30010001 RAL-59 1191 chr3R 30084851 30084881 chr3R 30086318 30086348 hobo 5 1467 0.0 6.0 3.0 1.2 1497 chr3R 30084851 intron sima + chr3R 30085600 intron sima + chr3R 30086348 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-59 1192 chr3R 30088619 30088635 chr3R 30088704 30088721 5 85 0.0 0.0 0.0 5.0 102 chr3R 30088619 intron sima + chr3R 30088670 intron sima + chr3R 30088721 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-59 1193 chr3R 30124964 30124975 chr3R 30125040 30125051 8 75 6.5 4.0 5.2 1.3 87 chr3R 30124964 intergenic CG45073 - chr3R 30125008 intergenic CG45073 - chr3R 30125051 intergenic CG45073 - chr3R_8_30125001 chr3R_30125001 RAL-59 1194 chr3R 30136962 30136982 chr3R 30137041 30137061 11 79 3.0 4.0 3.5 2.4 99 chr3R 30136962 exon AdoR - chr3R 30137012 intron AdoR - chr3R 30137061 intron AdoR - chr3R_11_30135001 chr3R_30135001 RAL-59 1195 chr3R 30182754 30182788 chr3R 30182893 30182920 4 137 3.5 1.5 2.5 1.1 166 chr3R 30182754 intergenic not near genes chr3R 30182837 intergenic not near genes chr3R 30182920 intergenic not near genes chr3R_4_30180001 chr3R_30180001 RAL-59 1196 chr3R 30262585 30262594 chr3R 30262682 30262691 4 97 3.0 0.0 1.5 1.6 106 chr3R 30262585 intergenic not near genes chr3R 30262638 intergenic not near genes chr3R 30262691 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-59 1197 chr3R 30317325 30317352 chr3R 30324917 30324944 roo 5 7592 1.0 0.5 0.8 2.8 7619 chr3R 30317325 intron hdc + chr3R 30321134 intron hdc + chr3R 30324944 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-59 1198 chr3R 30330492 30330525 chr3R 30330571 30330605 17 77 1.0 2.5 1.8 6.1 113 chr3R 30330492 intron hdc + chr3R 30330548 intron hdc + chr3R 30330605 intron hdc + chr3R_17_30330001 chr3R_30330001 RAL-59 1199 chr3R 30396215 30396247 chr3R 30404481 30404513 roo 7 8265 2.0 2.5 2.2 2.2 8298 chr3R 30396215 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-59 1200 chr3R 23457296 23457329 chr3R 30410909 30410942 14 6953614 21.5 12.5 17.0 0.8 6953646 chr3R 23457296 intron CG4374 - chr3R 26934119 intron sda + chr3R 30410942 intergenic not near genes chr3R_14_26930001 chr3R_26930001 RAL-59 1201 chr3R 30440691 30440721 chr3R 30440949 30440980 21 259 4.5 4.5 4.5 3.8 289 chr3R 30440691 intron CG15537 - chr3R 30440836 intron CG15537 - chr3R 30440980 intron CG15537 - chr3R_21_30440001 chr3R_30440001 RAL-59 1202 chr3R 30471900 30471936 chr3R 30471976 30472010 5 75 2.0 2.5 2.2 1.6 110 chr3R 30471900 intron PH4alphaEFB + chr3R 30471955 intron PH4alphaEFB + chr3R 30472010 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-59 1203 chr3R 30480473 30480509 chr3R 30482941 30482977 jockey 15 2468 0.5 1.5 1.0 7.5 2504 chr3R 30480473 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-59 1204 chr3R 30498411 30498427 chr3R 30498611 30498627 4 200 0.0 2.5 1.2 1.8 216 chr3R 30498411 intron PH4alphaNE1 - chr3R 30498519 intron PH4alphaNE1 - chr3R 30498627 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-59 1205 chr3R 30517153 30517165 chr3R 30517242 30517248 5 88 2.0 4.0 3.0 1.2 95 chr3R 30517153 3` UTR jdp - chr3R 30517200 3` UTR jdp - chr3R 30517248 3` UTR jdp - chr3R_5_30515001 chr3R_30515001 RAL-59 1206 chr3R 30544663 30544688 chr3R 30544742 30544768 9 80 2.5 2.0 2.2 2.8 105 chr3R 30544663 intron tmod + chr3R 30544716 intron tmod + chr3R 30544768 intron tmod + chr3R_9_30540001 chr3R_30540001 RAL-59 1207 chr3R 30551270 30551298 chr3R 30551354 30551382 12 83 4.0 1.5 2.8 3.2 112 chr3R 30551270 intron tmod + chr3R 30551326 intron tmod + chr3R 30551382 intron tmod + chr3R_12_30550001 chr3R_30550001 RAL-59 1208 chr3R 30592507 30592539 chr3R 30592617 30592649 15 110 4.5 3.5 4.0 3.0 142 chr3R 30592507 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592649 intergenic CG2246 - chr3R_15_30590001 chr3R_30590001 RAL-59 1209 chr3R 30627603 30627634 chr3R 30627682 30627714 13 77 3.5 2.0 2.8 3.4 111 chr3R 30627603 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627714 exon CG2267 - chr3R_13_30625001 chr3R_30625001 RAL-59 1210 chr3R 30679519 30679550 chr3R 30686988 30687019 blood 12 7469 2.5 5.5 4.0 2.4 7500 chr3R 30679519 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_12_30680001 chr3R_30680001 RAL-59 1211 chr3R 30690161 30690192 chr3R 30690245 30690276 12 84 5.5 2.0 3.8 2.5 115 chr3R 30690161 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_12_30690001 chr3R_30690001 RAL-59 1212 chr3R 30900536 30900566 chr3R 30901671 30901701 10 1135 2.0 1.0 1.5 4.0 1165 chr3R 30900536 3` UTR Cyp4c3 + chr3R 30901118 intron CG33483 - chr3R 30901701 intron CG33483 - chr3R_10_30900001 chr3R_30900001 RAL-59 1213 chr3R 31042111 31042142 chr3R 31042198 31042229 8 87 3.0 0.5 1.8 2.9 118 chr3R 31042111 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042229 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-59 1214 chr3R 31067026 31067056 chr3R 31067152 31067182 11 126 0.5 0.5 0.5 7.3 156 chr3R 31067026 intron Sox100B + chr3R 31067104 intron Sox100B + chr3R 31067182 intron Sox100B + chr3R_11_31065001 chr3R_31065001 RAL-59 1215 chr3R 31074232 31074261 chr3R 31081830 31081859 springer 5 7598 2.0 2.5 2.2 1.6 7627 chr3R 31074232 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-59 1216 chr3R 31146751 31146781 chr3R 31146829 31146859 12 78 0.5 1.0 0.8 6.7 108 chr3R 31146751 intron Gycbeta100B + chr3R 31146805 intron Gycbeta100B + chr3R 31146859 intron Gycbeta100B + chr3R_12_31145001 chr3R_31145001 RAL-59 1217 chr3R 31274364 31274395 chr3R 31274442 31274442 5 70 0.5 1.0 0.8 2.8 78 chr3R 31274364 intergenic not near genes chr3R 31274403 intergenic not near genes chr3R 31274442 intergenic not near genes chr3R_5_31270001 chr3R_31270001 RAL-59 1218 chr3R 31279374 31279409 chr3R 31285565 31285600 diver 12 6189 4.0 4.5 4.2 2.3 6226 chr3R 31279374 intergenic not near genes chr3R 31282487 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_12_31280001 chr3R_31280001 RAL-59 1219 chr3R 31348063 31348081 chr3R 31348140 31348158 8 77 2.5 4.5 3.5 1.8 95 chr3R 31348063 intron CG34347 + chr3R 31348110 intron CG34347 + chr3R 31348158 intron CG34347 + chr3R_8_31345001 chr3R_31345001 RAL-59 1220 chr3R 31412706 31412743 chr3R 31412799 31412836 4 93 1.0 1.5 1.2 1.8 130 chr3R 31412706 intron Gprk2 + chr3R 31412771 intron Gprk2 + chr3R 31412836 intron Gprk2 + chr3R_4_31410001 chr3R_31410001 RAL-59 1221 chr3R 31413094 31413117 chr3R 31418294 31418317 copia 6 5198 4.0 0.0 2.0 2.0 5223 chr3R 31413094 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-59 1222 chr3R 31606138 31606166 chr3R 31606300 31606328 15 160 3.5 0.5 2.0 5.0 190 chr3R 31606138 intron CycG - chr3R 31606233 intron CycG - chr3R 31606328 intron CycG - chr3R_15_31605001 chr3R_31605001 RAL-59 1223 chr3R 31630067 31630081 chr3R 31630172 31630186 4 105 3.0 5.5 4.2 0.8 119 chr3R 31630067 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630186 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-59 1224 chr3R 31691530 31691562 chr3R 31696296 31696328 Doc 18 4762 3.5 10.0 6.8 2.3 4798 chr3R 31691530 intergenic not near genes chr3R 31693929 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_18_31690001 chr3R_31690001 RAL-59 1225 chr3R 31860285 31860298 chr3R 31860365 31860378 4 80 2.5 3.0 2.8 1.1 93 chr3R 31860285 intron heph - chr3R 31860332 intron heph - chr3R 31860378 intron heph - chr3R_4_31860001 chr3R_31860001 RAL-59 1226 chr3R 31915481 31915516 chr3R 31915588 31915621 12 105 5.5 1.0 3.2 2.9 140 chr3R 31915481 intron heph - chr3R 31915551 intron heph - chr3R 31915621 intron heph - chr3R_12_31915001 chr3R_31915001 RAL-59 1227 chr3R 31924167 31924178 chr3R 31924319 31924329 8 151 8.5 0.0 4.2 1.5 162 chr3R 31924167 intron heph - chr3R 31924248 intron heph - chr3R 31924329 intron heph - chr3R_8_31920001 chr3R_31920001 RAL-59 1228 chr4 671606 671636 chr4 680189 680219 Tirant 10 8583 1.0 2.5 1.8 3.6 8613 chr4 671606 intron CG11360 + chr4 675912 intron CG11360 + chr4 680219 intron CG11360 + chr4_10_675001 chr4_675001 RAL-59 1229 chr4 959635 959652 chr4 959814 959831 4 179 0.0 0.5 0.2 3.3 196 chr4 959635 intergenic CR44030 +,CR45201 - chr4 959733 5` UTR CR44030 + chr4 959831 5` UTR CR44030 + chr4_4_955001 chr4_955001 RAL-59 1230 chr4 1171971 1171977 chr4 1172235 1172242 4 265 2.0 0.5 1.2 1.8 271 chr4 1171971 intergenic pho - chr4 1172106 intergenic pho - chr4 1172242 intergenic pho - chr4_4_1170001 chr4_1170001 RAL-59 1231 chrX 551420 551455 chrX 558982 558986 412 11 7559 5.5 1.5 3.5 2.4 7566 chrX 551420 intron Appl + chrX 555203 intron Appl + chrX 558986 intron Appl + chrX_11_555001 chrX_555001 RAL-59 1232 chrX 778128 778152 chrX 778215 778242 12 89 7.0 0.5 3.8 2.5 114 chrX 778128 intron fz3 + chrX 778185 intron fz3 + chrX 778242 intron fz3 + chrX_12_775001 chrX_775001 RAL-59 1233 chrX 780591 780603 chrX 780667 780679 5 75 5.5 0.0 2.8 1.3 88 chrX 780591 intron fz3 + chrX 780635 intron fz3 + chrX 780679 intron fz3 + chrX_5_780001 chrX_780001 RAL-59 1234 chrX 827599 827616 chrX 835391 835407 roo 6 7791 4.0 0.0 2.0 2.0 7808 chrX 827599 intron CG43867 - chrX 831503 intron CG43867 - chrX 835407 intron CG43867 - chrX_6_830001 chrX_830001 RAL-59 1235 chrX 841201 841226 chrX 841311 841335 11 110 5.0 1.5 3.2 2.6 134 chrX 841201 intron CG43867 - chrX 841268 intron CG43867 - chrX 841335 intron CG43867 - chrX_11_840001 chrX_840001 RAL-59 1236 chrX 906702 906716 chrX 908491 908505 S-element 9 1789 3.0 4.5 3.8 1.9 1803 chrX 906702 intron CG43867 - chrX 907604 intron CG43867 - chrX 908505 intron CG43867 - chrX_9_905001 chrX_905001 RAL-59 1237 chrX 1051074 1051086 chrX 1051152 1051160 5 77 4.0 3.5 3.8 1.0 86 chrX 1051074 intron CR44779 + chrX 1051117 intron CR44779 + chrX 1051160 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-59 1238 chrX 1053117 1053118 chrX 16983076 16983077 4 15929959 9.0 6.0 7.5 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-59 1239 chrX 1253730 1253764 chrX 1253812 1253839 13 81 3.0 5.5 4.2 2.5 109 chrX 1253730 intron Atf3 - chrX 1253784 intron Atf3 - chrX 1253839 intron Atf3 - chrX_13_1250001 chrX_1250001 RAL-59 1240 chrX 1428593 1428626 chrX 1428679 1428712 9 86 1.5 4.5 3.0 2.2 119 chrX 1428593 intron futsch + chrX 1428652 intron futsch + chrX 1428712 intron futsch + chrX_9_1425001 chrX_1425001 RAL-59 1241 chrX 1518034 1518072 chrX 1523436 1523471 jockey 8 5402 1.5 4.0 2.8 2.1 5437 chrX 1518034 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523471 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-59 1242 chrX 1560660 1560685 chrX 1560751 1560774 6 91 0.5 2.5 1.5 2.4 114 chrX 1560660 intron Mur2B - chrX 1560717 intron Mur2B - chrX 1560774 intron Mur2B - chrX_6_1560001 chrX_1560001 RAL-59 1243 chrX 1627976 1627999 chrX 1635444 1635467 gtwin 11 7466 3.0 3.0 3.0 2.8 7491 chrX 1627976 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-59 1244 chrX 1903348 1903367 chrX 1903429 1903446 9 81 4.5 0.5 2.5 2.6 98 chrX 1903348 5` UTR CR43864 + chrX 1903397 5` UTR CR43864 + chrX 1903446 5` UTR CR43864 + chrX_9_1900001 chrX_1900001 RAL-59 1245 chrX 1954887 1954914 chrX 1962826 1962834 Stalker2 6 7935 3.5 2.0 2.8 1.6 7947 chrX 1954887 intron Hr4 + chrX 1958860 intron Hr4 + chrX 1962834 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-59 1246 chrX 2146651 2146686 chrX 2146743 2146779 10 91 5.0 3.5 4.2 1.9 128 chrX 2146651 intron Pgd + chrX 2146715 intron Pgd + chrX 2146779 intron Pgd + chrX_10_2145001 chrX_2145001 RAL-59 1247 chrX 2159854 2159860 chrX 15115121 15115136 5 12955271 18.5 10.0 14.2 0.3 12955282 chrX 2159854 exon Cyp4d1 - chrX 8637495 intron oc - chrX 15115136 exon Cyp4s3 - chrX_5_8635001 chrX_8635001 RAL-59 1248 chrX 2385734 2385757 chrX 2385812 2385835 6 78 2.5 1.5 2.0 2.0 101 chrX 2385734 intron PsGEF - chrX 2385784 intron PsGEF - chrX 2385835 intron PsGEF - chrX_6_2385001 chrX_2385001 RAL-59 1249 chrX 2399845 2399869 chrX 2408192 2408201 roo 5 8344 2.5 1.0 1.8 1.8 8356 chrX 2399845 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408201 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-59 1250 chrX 2635374 2635402 chrX 2635483 2635511 5 109 1.0 5.0 3.0 1.2 137 chrX 2635374 intron sgg + chrX 2635442 intron sgg + chrX 2635511 intron sgg + chrX_5_2635001 chrX_2635001 RAL-59 1251 chrX 2888112 2888147 chrX 2888189 2888224 11 78 2.0 2.5 2.2 3.4 112 chrX 2888112 intron kirre + chrX 2888168 intron kirre + chrX 2888224 intron kirre + chrX_11_2885001 chrX_2885001 RAL-59 1252 chrX 2964648 2964665 chrX 2964768 2964785 6 119 8.5 1.5 5.0 1.0 137 chrX 2964648 intron,intron kirre +,rst - chrX 2964716 intron,intron kirre +,rst - chrX 2964785 intron,intron kirre +,rst - chrX_6_2960001 chrX_2960001 RAL-59 1253 chrX 3075640 3075656 chrX 3080946 3080962 Transpac 5 5306 1.5 2.0 1.8 1.8 5322 chrX 3075640 intron kirre + chrX 3078301 intron kirre + chrX 3080962 intron kirre + chrX_5_3075001 chrX_3075001 RAL-59 1254 chrX 3203462 3203495 chrX 3203661 3203693 7 199 2.0 1.5 1.8 2.5 231 chrX 3203462 intron dnc + chrX 3203578 intron dnc + chrX 3203693 intron dnc + chrX_7_3200001 chrX_3200001 RAL-59 1255 chrX 3408990 3409017 chrX 3409067 3409094 11 77 0.5 4.5 2.5 3.1 104 chrX 3408990 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_11_3405001 chrX_3405001 RAL-59 1256 chrX 3459989 3460010 chrX 3460066 3460087 7 77 0.5 0.0 0.2 5.8 98 chrX 3459989 intron,intron CR44999 +,CG16782 - chrX 3460038 intron,5` UTR CR44999 +,CG16782 - chrX 3460087 intron,5` UTR CR44999 +,CG16782 - chrX_7_3460001 chrX_3460001 RAL-59 1257 chrX 3493090 3493123 chrX 3502249 3502282 roo 7 9159 4.5 0.5 2.5 2.0 9192 chrX 3493090 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502282 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-59 1258 chrX 3518905 3518910 chrX 12076734 12076759 5 8557843 15.5 3.0 9.2 0.5 8557854 chrX 3518905 intron,intron CR44999 +,CG32791 - chrX 7797832 intergenic not near genes chrX 12076759 intron,intron CR43960 +,Ten-a + chrX_5_7795001 chrX_7795001 RAL-59 1259 chrX 3597555 3597576 chrX 3619723 3619744 roo 7 22168 4.0 2.5 3.2 1.7 22189 chrX 3597555 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-59 1260 chrX 3620474 3620487 chrX 3620573 3620586 5 99 0.5 2.0 1.2 2.3 112 chrX 3620474 intron AstA-R1 + chrX 3620530 intron AstA-R1 + chrX 3620586 intron AstA-R1 + chrX_5_3620001 chrX_3620001 RAL-59 1261 chrX 3726760 3726793 chrX 3730157 3730189 NOF 4 3397 1.5 0.0 0.8 2.2 3429 chrX 3726760 intron tlk + chrX 3728474 intron tlk + chrX 3730189 intron tlk + chrX_4_3725001 chrX_3725001 RAL-59 1262 chrX 3866107 3866124 chrX 3866185 3866202 4 78 0.5 0.5 0.5 2.7 95 chrX 3866107 intron yin - chrX 3866154 intron yin - chrX 3866202 intron yin - chrX_4_3865001 chrX_3865001 RAL-59 1263 chrX 3881270 3881305 chrX 3881409 3881444 9 139 2.0 3.0 2.5 2.6 174 chrX 3881270 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881444 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-59 1264 chrX 3986864 3986887 chrX 3994497 3994520 412 7 7633 3.5 0.0 1.8 2.5 7656 chrX 3986864 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994520 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-59 1265 chrX 4101890 4101900 chrX 4101970 4101980 5 80 4.0 7.0 5.5 0.8 90 chrX 4101890 exon CG15375 + chrX 4101935 exon CG15375 + chrX 4101980 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-59 1266 chrX 4157897 4157911 chrX 4164950 4164964 297 4 7053 1.5 2.0 1.8 1.4 7067 chrX 4157897 intron Fas2 - chrX 4161430 intron Fas2 - chrX 4164964 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-59 1267 chrX 4294240 4294274 chrX 4294536 4294570 8 296 2.0 3.5 2.8 2.1 330 chrX 4294240 intergenic not near genes chrX 4294405 intergenic not near genes chrX 4294570 intergenic not near genes chrX_8_4290001 chrX_4290001 RAL-59 1268 chrX 4305221 4305251 chrX 4305348 4305378 6 126 2.5 4.5 3.5 1.3 157 chrX 4305221 intergenic not near genes chrX 4305300 intergenic not near genes chrX 4305378 intergenic not near genes chrX_6_4305001 chrX_4305001 RAL-59 1269 chrX 4700396 4700427 chrX 4700739 4700770 jockey 5 343 2.0 0.5 1.2 2.3 374 chrX 4700396 3` UTR ctp + chrX 4700583 3` UTR ctp + chrX 4700770 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-59 1270 chrX 4763249 4763277 chrX 4763737 4763765 Stalker4 4 486 3.0 0.5 1.8 1.4 516 chrX 4763249 intergenic not near genes chrX 4763507 intergenic not near genes chrX 4763765 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-59 1271 chrX 4792378 4792412 chrX 4792811 4792845 jockey 8 433 1.5 3.5 2.5 2.3 467 chrX 4792378 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792845 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-59 1272 chrX 4827212 4827243 chrX 4827298 4827330 4 87 0.0 1.0 0.5 2.7 118 chrX 4827212 intergenic CG12682 + chrX 4827271 intergenic CG12682 + chrX 4827330 intergenic CG12682 + chrX_4_4825001 chrX_4825001 RAL-59 1273 chrX 4827995 4828001 chrX 4835343 4835372 Stalker4 5 7360 5.5 2.5 4.0 1.0 7377 chrX 4827995 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835372 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-59 1274 chrX 4864166 4864178 chrX 4864244 4864256 9 78 6.0 7.5 6.8 1.2 90 chrX 4864166 intron CG42594 + chrX 4864211 intron CG42594 + chrX 4864256 intron CG42594 + chrX_9_4860001 chrX_4860001 RAL-59 1275 chrX 4931346 4931380 chrX 4931440 4931474 8 94 3.0 1.5 2.2 2.5 128 chrX 4931346 intron CG44774 - chrX 4931410 intron CG44774 - chrX 4931474 intron CG44774 - chrX_8_4930001 chrX_4930001 RAL-59 1276 chrX 4965558 4965589 chrX 4965637 4965669 8 79 3.0 4.0 3.5 1.8 111 chrX 4965558 intron CR44833 - chrX 4965614 intron CR44833 - chrX 4965669 intron CR44833 - chrX_8_4965001 chrX_4965001 RAL-59 1277 chrX 5096273 5096305 chrX 5103838 5103870 springer 7 7565 1.5 2.0 1.8 2.5 7597 chrX 5096273 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-59 1278 chrX 5122822 5122850 chrX 5123051 5123072 8 227 1.0 0.0 0.5 5.3 250 chrX 5122822 intron,intron CG15465 +,rg + chrX 5122947 intron,intron CG15465 +,rg + chrX 5123072 intron,intron CG15465 +,rg + chrX_8_5120001 chrX_5120001 RAL-59 1279 chrX 5345396 5345426 chrX 5345507 5345537 7 111 2.0 1.5 1.8 2.5 141 chrX 5345396 intron SK + chrX 5345466 intron SK + chrX 5345537 intron SK + chrX_7_5345001 chrX_5345001 RAL-59 1280 chrX 5524840 5524856 chrX 5528703 5528719 412 4 3863 2.0 0.5 1.2 1.8 3879 chrX 5524840 intergenic snoRNA:Psi28S-3342 - chrX 5526780 intergenic not near genes chrX 5528719 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-59 1281 chrX 5566778 5566783 chrX 5566856 5566863 4 80 4.0 7.0 5.5 0.6 85 chrX 5566778 intergenic not near genes chrX 5566820 intergenic not near genes chrX 5566863 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-59 1282 chrX 5705732 5705756 chrX 5706255 5706282 6 526 2.0 2.5 2.2 1.9 550 chrX 5705732 intron CG4096 + chrX 5706007 intron CG4096 + chrX 5706282 intron CG4096 + chrX_6_5705001 chrX_5705001 RAL-59 1283 chrX 5798871 5798887 chrX 5799033 5799049 5 162 1.0 4.5 2.8 1.3 178 chrX 5798871 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799049 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-59 1284 chrX 5883819 5883831 chrX 5884060 5884072 pogo 5 241 1.0 0.5 0.8 2.8 253 chrX 5883819 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884072 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-59 1285 chrX 6118700 6118727 chrX 6118782 6118809 8 82 0.5 1.0 0.8 4.4 109 chrX 6118700 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118809 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-59 1286 chrX 6335216 6335243 chrX 6337726 6337753 Tirant 5 2510 0.0 1.5 0.8 2.8 2537 chrX 6335216 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-59 1287 chrX 6392874 6392900 chrX 6397638 6397665 Doc 8 4765 2.5 5.0 3.8 1.7 4791 chrX 6392874 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397665 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-59 1288 chrX 6562818 6562851 chrX 6571299 6571333 Tirant 19 8481 3.0 4.0 3.5 4.2 8515 chrX 6562818 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571333 intron CG34417 + chrX_19_6565001 chrX_6565001 RAL-59 1289 chrX 6618465 6618474 chrX 6618543 6618552 7 78 1.5 4.5 3.0 1.8 87 chrX 6618465 intron pigs + chrX 6618508 intron pigs + chrX 6618552 intron pigs + chrX_7_6615001 chrX_6615001 RAL-59 1290 chrX 6737519 6737552 chrX 6737601 6737634 9 82 0.5 4.0 2.2 2.8 115 chrX 6737519 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737634 intron CG3168 - chrX_9_6735001 chrX_6735001 RAL-59 1291 chrX 6897578 6897704 chrX 6897655 6897814 8 102 0.0 0.5 0.2 6.7 236 chrX 6897578 intergenic not near genes chrX 6897696 intergenic not near genes chrX 6897814 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-59 1292 chrX 7023602 7023633 chrX 7030992 7031023 Tabor 9 7390 3.0 2.0 2.5 2.6 7421 chrX 7023602 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031023 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-59 1293 chrX 7113730 7113753 chrX 7113808 7113832 4 79 2.0 0.0 1.0 2.0 102 chrX 7113730 intergenic not near genes chrX 7113781 intergenic not near genes chrX 7113832 intergenic not near genes chrX_4_7110001 chrX_7110001 RAL-59 1294 chrX 7125253 7125278 chrX 7134410 7134437 roo 6 9159 1.0 4.0 2.5 1.7 9184 chrX 7125253 intergenic not near genes chrX 7129845 intergenic not near genes chrX 7134437 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-59 1295 chrX 7582337 7582343 chrX 7582412 7582420 6 77 4.5 8.0 6.2 0.8 83 chrX 7582337 intergenic not near genes chrX 7582378 intergenic not near genes chrX 7582420 intergenic not near genes chrX_6_7580001 chrX_7580001 RAL-59 1296 chrX 7702903 7702933 chrX 7703342 7703363 jockey 8 438 3.5 2.5 3.0 2.0 460 chrX 7702903 intron CHES-1-like - chrX 7703133 intron CHES-1-like - chrX 7703363 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-59 1297 chrX 7845725 7845746 chrX 7847216 7847237 hopper2 5 1491 4.5 1.5 3.0 1.2 1512 chrX 7845725 intergenic not near genes chrX 7846481 intergenic not near genes chrX 7847237 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-59 1298 chrX 8085572 8085601 chrX 8085658 8085687 4 86 4.0 0.0 2.0 1.3 115 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085687 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-59 1299 chrX 8092290 8092315 chrX 8092375 8092400 6 85 2.5 1.5 2.0 2.0 110 chrX 8092290 intron Ubc-E2H - chrX 8092345 intron Ubc-E2H - chrX 8092400 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-59 1300 chrX 8305189 8305223 chrX 8305270 8305303 9 81 2.0 2.0 2.0 3.0 114 chrX 8305189 intron nAChRalpha3 - chrX 8305246 intron nAChRalpha3 - chrX 8305303 intron nAChRalpha3 - chrX_9_8305001 chrX_8305001 RAL-59 1301 chrX 8811035 8811052 chrX 8811132 8811149 5 97 1.5 0.5 1.0 2.5 114 chrX 8811035 intergenic not near genes chrX 8811092 intergenic not near genes chrX 8811149 intergenic not near genes chrX_5_8810001 chrX_8810001 RAL-59 1302 chrX 8856940 8856973 chrX 8857059 8857089 9 118 3.0 2.5 2.8 2.4 149 chrX 8856940 intron CG12075 + chrX 8857014 intron CG12075 + chrX 8857089 intron CG12075 + chrX_9_8855001 chrX_8855001 RAL-59 1303 chrX 8922328 8922363 chrX 8922762 8922797 jockey 7 434 2.5 7.5 5.0 1.2 469 chrX 8922328 intron rdgA + chrX 8922562 intron rdgA + chrX 8922797 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-59 1304 chrX 9152077 9152095 chrX 9152160 9152178 6 83 1.5 1.5 1.5 2.4 101 chrX 9152077 intergenic dalao +,His3.3B - chrX 9152128 intergenic dalao +,His3.3B - chrX 9152178 intergenic dalao +,His3.3B - chrX_6_9150001 chrX_9150001 RAL-59 1305 chrX 9218076 9218090 chrX 9218167 9218181 5 91 1.5 0.5 1.0 2.5 105 chrX 9218076 3` UTR t - chrX 9218128 3` UTR t - chrX 9218181 3` UTR t - chrX_5_9215001 chrX_9215001 RAL-59 1306 chrX 9508138 9508164 chrX 9509656 9509680 jockey 9 1518 3.5 6.0 4.8 1.6 1542 chrX 9508138 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509680 intron CG32700 - chrX_9_9505001 chrX_9505001 RAL-59 1307 chrX 9575794 9575820 chrX 9576118 9576144 mdg3 13 323 6.0 4.5 5.2 2.1 350 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575969 intron,intron CG32699 -,CG42395 - chrX 9576144 intron,5` UTR CG32699 -,CG42395 - chrX_13_9575001 chrX_9575001 RAL-59 1308 chrX 9784168 9784205 chrX 9784356 9784392 10 187 1.0 4.0 2.5 2.9 224 chrX 9784168 intron CG32698 + chrX 9784280 intron CG32698 + chrX 9784392 intron CG32698 + chrX_10_9780001 chrX_9780001 RAL-59 1309 chrX 10285890 10285902 chrX 10286226 10286238 6 336 2.0 0.0 1.0 3.0 348 chrX 10285890 intron alpha-Man-I - chrX 10286064 intron alpha-Man-I - chrX 10286238 intron alpha-Man-I - chrX_6_10285001 chrX_10285001 RAL-59 1310 chrX 10550855 10550881 chrX 10552322 10552348 hobo 6 1466 4.0 2.0 3.0 1.5 1493 chrX 10550855 intron spri - chrX 10551602 intron spri - chrX 10552348 intron spri - chrX_6_10550001 chrX_10550001 RAL-59 1311 chrX 10694156 10694166 chrX 10694236 10694246 4 80 1.0 0.5 0.8 2.2 90 chrX 10694156 intron X11Lbeta + chrX 10694201 intron X11Lbeta + chrX 10694246 intron X11Lbeta + chrX_4_10690001 chrX_10690001 RAL-59 1312 chrX 10694169 10694184 chrX 10694231 10694264 4 74 0.5 0.5 0.5 2.7 95 chrX 10694169 intron X11Lbeta + chrX 10694216 intron X11Lbeta + chrX 10694264 intron X11Lbeta + chrX_4_10690001 chrX_10690001 RAL-59 1313 chrX 10719128 10719143 chrX 10719212 10719227 4 84 0.0 0.0 0.0 4.0 99 chrX 10719128 intron CG32676 - chrX 10719178 intron CG32676 - chrX 10719227 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-59 1314 chrX 10772678 10772694 chrX 10772760 10772777 Tirant 9 82 3.0 2.0 2.5 2.6 99 chrX 10772678 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772777 intron CG15211 + chrX_9_10770001 chrX_10770001 RAL-59 1315 chrX 11291686 11291699 chrX 11291768 11291778 4 81 3.0 0.5 1.8 1.4 92 chrX 11291686 intron CG44422 - chrX 11291732 intron CG44422 - chrX 11291778 intron CG44422 - chrX_4_11290001 chrX_11290001 RAL-59 1316 chrX 11554244 11554252 chrX 11554355 11554363 5 111 3.5 4.5 4.0 1.0 119 chrX 11554244 3` UTR Drak + chrX 11554304 3` UTR Drak + chrX 11554363 3` UTR Drak + chrX_5_11550001 chrX_11550001 RAL-59 1317 chrX 11684869 11684885 chrX 11684995 11685004 5 125 4.0 0.5 2.2 1.6 135 chrX 11684869 intron bif + chrX 11684936 intron bif + chrX 11685004 intron bif + chrX_5_11680001 chrX_11680001 RAL-59 1318 chrX 11886447 11886479 chrX 11886557 11886589 9 109 4.0 2.5 3.2 2.1 142 chrX 11886447 intron CG10353 - chrX 11886518 intron CG10353 - chrX 11886589 intron CG10353 - chrX_9_11885001 chrX_11885001 RAL-59 1319 chrX 11936574 11936586 chrX 11936673 11936685 5 99 0.0 3.0 1.5 2.0 111 chrX 11936574 intron cac - chrX 11936630 intron cac - chrX 11936685 intron cac - chrX_5_11935001 chrX_11935001 RAL-59 1320 chrX 12094038 12094063 chrX 12094130 12094155 8 88 0.0 3.5 1.8 2.9 117 chrX 12094038 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094155 intron,intron CR43960 +,Ten-a + chrX_8_12090001 chrX_12090001 RAL-59 1321 chrX 12168135 12168163 chrX 12173574 12173605 I-element 7 5441 2.5 2.0 2.2 2.2 5470 chrX 12168135 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173605 intron Ten-a + chrX_7_12170001 chrX_12170001 RAL-59 1322 chrX 12176737 12176765 chrX 12176813 12176839 17 76 2.5 2.0 2.2 5.3 102 chrX 12176737 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_17_12175001 chrX_12175001 RAL-59 1323 chrX 12212676 12212711 chrX 12212760 12212795 11 84 1.5 2.5 2.0 3.7 119 chrX 12212676 intron Ten-a + chrX 12212736 intron Ten-a + chrX 12212795 intron Ten-a + chrX_11_12210001 chrX_12210001 RAL-59 1324 chrX 12375490 12375502 chrX 12375588 12375600 8 98 2.5 2.0 2.2 2.5 110 chrX 12375490 intergenic Ir11a - chrX 12375545 intergenic Ir11a - chrX 12375600 exon Ir11a - chrX_8_12375001 chrX_12375001 RAL-59 1325 chrX 12862280 12862307 chrX 12862400 12862412 8 116 0.5 1.0 0.8 4.4 132 chrX 12862280 intron Pde9 - chrX 12862346 intron Pde9 - chrX 12862412 intron Pde9 - chrX_8_12860001 chrX_12860001 RAL-59 1326 chrX 12953892 12953926 chrX 12954030 12954064 4 138 0.0 0.0 0.0 4.0 172 chrX 12953892 intron hec - chrX 12953978 intron hec - chrX 12954064 intron hec - chrX_4_12950001 chrX_12950001 RAL-59 1327 chrX 13061357 13061372 chrX 13061468 13061483 4 111 2.0 3.5 2.8 1.1 126 chrX 13061357 intron rad + chrX 13061420 intron rad + chrX 13061483 intron rad + chrX_4_13060001 chrX_13060001 RAL-59 1328 chrX 13172348 13172383 chrX 13172424 13172458 6 76 1.5 1.5 1.5 2.4 110 chrX 13172348 exon CG34411 - chrX 13172403 intron CG34411 - chrX 13172458 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-59 1329 chrX 13908804 13908807 chrX 13908875 13908885 4 75 3.5 9.0 6.2 0.6 81 chrX 13908804 intron mamo - chrX 13908844 intron mamo - chrX 13908885 intron mamo - chrX_4_13905001 chrX_13905001 RAL-59 1330 chrX 13943277 13943300 chrX 13943368 13943391 8 91 0.0 3.0 1.5 3.2 114 chrX 13943277 intron mamo - chrX 13943334 intron mamo - chrX 13943391 intron mamo - chrX_8_13940001 chrX_13940001 RAL-59 1331 chrX 14105021 14105053 chrX 14114172 14114204 roo 14 9149 3.0 3.5 3.2 3.3 9183 chrX 14105021 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_14_14105001 chrX_14105001 RAL-59 1332 chrX 14331765 14331791 chrX 14332097 14332125 6 332 1.5 3.5 2.5 1.7 360 chrX 14331765 intron dpr8 + chrX 14331945 intron dpr8 + chrX 14332125 intron dpr8 + chrX_6_14330001 chrX_14330001 RAL-59 1333 chrX 14333301 14333315 chrX 14333367 14333397 4 77 1.0 2.5 1.8 1.4 96 chrX 14333301 intron dpr8 + chrX 14333349 intron dpr8 + chrX 14333397 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-59 1334 chrX 14589686 14589708 chrX 14589923 14589945 pogo 5 237 0.0 2.0 1.0 2.5 259 chrX 14589686 intron CG9413 - chrX 14589816 intron CG9413 - chrX 14589945 intron CG9413 - chrX_5_14585001 chrX_14585001 RAL-59 1335 chrX 14608741 14608766 chrX 14608829 14608854 4 88 5.0 8.0 6.5 0.5 113 chrX 14608741 intron NetA - chrX 14608798 intron NetA - chrX 14608854 intron NetA - chrX_4_14605001 chrX_14605001 RAL-59 1336 chrX 14628180 14628212 chrX 14628271 14628303 7 90 4.5 3.5 4.0 1.4 123 chrX 14628180 intron NetA - chrX 14628242 intron NetA - chrX 14628303 intron NetA - chrX_7_14625001 chrX_14625001 RAL-59 1337 chrX 14636460 14636493 chrX 14641901 14641934 I-element 8 5441 4.0 2.5 3.2 1.9 5474 chrX 14636460 intron NetA - chrX 14639197 intron NetA - chrX 14641934 intron NetA - chrX_8_14635001 chrX_14635001 RAL-59 1338 chrX 14818769 14818797 chrX 14823973 14824001 copia 5 5199 0.5 2.5 1.5 2.0 5232 chrX 14818769 intron rut - chrX 14821385 intron rut - chrX 14824001 intron rut - chrX_5_14820001 chrX_14820001 RAL-59 1339 chrX 2159854 2159854 chrX 15115024 15115039 4 12955175 18.0 18.5 18.2 0.2 12955185 chrX 2159854 exon Cyp4d1 - chrX 8637446 intron oc - chrX 15115039 exon Cyp4s3 - chrX_4_8635001 chrX_8635001 RAL-59 1340 chrX 15246486 15246509 chrX 15246935 15246956 4 446 2.0 0.5 1.2 1.8 470 chrX 15246486 intergenic not near genes chrX 15246721 intergenic not near genes chrX 15246956 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-59 1341 chrX 15273709 15273739 chrX 15274876 15274906 1360 6 1166 2.0 6.0 4.0 1.2 1197 chrX 15273709 intergenic not near genes chrX 15274308 intergenic not near genes chrX 15274906 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-59 1342 chrX 15412144 15412174 chrX 15412693 15412723 7 549 0.5 3.5 2.0 2.3 579 chrX 15412144 intron Cngl - chrX 15412434 intron Cngl - chrX 15412723 intron Cngl - chrX_7_15410001 chrX_15410001 RAL-59 1343 chrX 15413048 15413085 chrX 15417350 15417387 Juan 10 4302 5.0 1.5 3.2 2.4 4339 chrX 15413048 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-59 1344 chrX 15435688 15435705 chrX 15436121 15436138 rover 4 433 0.0 3.5 1.8 1.4 450 chrX 15435688 intron Cngl - chrX 15435913 intron Cngl - chrX 15436138 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-59 1345 chrX 15519799 15519831 chrX 15519877 15519909 8 78 0.5 3.0 1.8 2.9 110 chrX 15519799 intron Ac13E - chrX 15519854 intron Ac13E - chrX 15519909 intron Ac13E - chrX_8_15515001 chrX_15515001 RAL-59 1346 chrX 15557576 15557596 chrX 15557694 15557714 4 118 3.5 2.5 3.0 1.0 138 chrX 15557576 intergenic not near genes chrX 15557645 intergenic not near genes chrX 15557714 intergenic not near genes chrX_4_15555001 chrX_15555001 RAL-59 1347 chrX 15678051 15678062 chrX 15678128 15678139 6 76 2.5 2.5 2.5 1.7 88 chrX 15678051 intergenic CG12708 + chrX 15678095 intergenic CG12708 + chrX 15678139 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-59 1348 chrX 16154941 16154955 chrX 16155024 16155035 4 78 1.0 1.5 1.2 1.8 94 chrX 16154941 intergenic not near genes chrX 16154988 intergenic not near genes chrX 16155035 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-59 1349 chrX 16505865 16505875 chrX 16505946 16505957 6 81 5.5 9.0 7.2 0.7 92 chrX 16505865 intron para - chrX 16505911 intron para - chrX 16505957 intron para - chrX_6_16505001 chrX_16505001 RAL-59 1350 chrX 16529432 16529444 chrX 16529543 16529555 4 111 0.0 2.5 1.2 1.8 123 chrX 16529432 intron para - chrX 16529494 intron para - chrX 16529555 intron para - chrX_4_16525001 chrX_16525001 RAL-59 1351 chrX 16689628 16689655 chrX 16689713 16689741 11 82 2.0 3.0 2.5 3.1 113 chrX 16689628 intron Sep4 - chrX 16689684 intron Sep4 - chrX 16689741 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-59 1352 chrX 16813558 16813571 chrX 16813646 16813659 4 88 0.0 2.5 1.2 1.8 101 chrX 16813558 intron CG4829 + chrX 16813608 intron CG4829 + chrX 16813659 intron CG4829 + chrX_4_16810001 chrX_16810001 RAL-59 1353 chrX 16833204 16833220 chrX 16833289 16833305 9 85 5.0 0.0 2.5 2.6 101 chrX 16833204 intron CG13004 - chrX 16833254 intron CG13004 - chrX 16833305 intron CG13004 - chrX_9_16830001 chrX_16830001 RAL-59 1354 chrX 17011971 17012000 chrX 17012054 17012082 9 83 1.0 1.5 1.2 4.1 111 chrX 17011971 intron CG45002 - chrX 17012026 intron CG45002 - chrX 17012082 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-59 1355 chrX 17061567 17061588 chrX 17061689 17061711 6 123 2.0 2.0 2.0 2.0 144 chrX 17061567 intron CG45002 - chrX 17061639 intron CG45002 - chrX 17061711 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-59 1356 chrX 17217672 17217705 chrX 17217754 17217787 7 82 3.0 3.5 3.2 1.7 115 chrX 17217672 intergenic CG5162 + chrX 17217730 intergenic CG5162 + chrX 17217787 intergenic CG5162 + chrX_7_17215001 chrX_17215001 RAL-59 1357 chrX 17282879 17282907 chrX 17282952 17282985 8 77 4.0 0.5 2.2 2.5 106 chrX 17282879 intron CG5445 + chrX 17282932 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_8_17280001 chrX_17280001 RAL-59 1358 chrX 17435758 17435779 chrX 17435834 17435855 4 76 0.0 1.0 0.5 2.7 97 chrX 17435758 intron CG12994 - chrX 17435806 intron CG12994 - chrX 17435855 intron CG12994 - chrX_4_17435001 chrX_17435001 RAL-59 1359 chrX 17556941 17556975 chrX 17557440 17557455 mdg1 4 494 2.0 3.0 2.5 1.1 514 chrX 17556941 intron CG43658 - chrX 17557198 intron CG43658 - chrX 17557455 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-59 1360 chrX 17680892 17680925 chrX 17680966 17681002 10 76 1.5 4.5 3.0 2.5 110 chrX 17680892 intron chas - chrX 17680947 intron chas - chrX 17681002 intron chas - chrX_10_17680001 chrX_17680001 RAL-59 1361 chrX 17766366 17766372 chrX 17766463 17766470 4 98 1.0 0.0 0.5 2.7 104 chrX 17766366 intergenic not near genes chrX 17766418 intergenic not near genes chrX 17766470 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-59 1362 chrX 17782573 17782600 chrX 17782662 17782689 5 88 1.5 3.0 2.2 1.6 116 chrX 17782573 intergenic not near genes chrX 17782631 intergenic not near genes chrX 17782689 intergenic not near genes chrX_5_17780001 chrX_17780001 RAL-59 1363 chrX 17792964 17792980 chrX 17796260 17796276 flea 4 3296 2.0 5.0 3.5 0.9 3312 chrX 17792964 intron OdsH + chrX 17794620 intron OdsH + chrX 17796276 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-59 1364 chrX 18043591 18043609 chrX 18043672 18043680 5 79 2.0 3.5 2.8 1.3 89 chrX 18043591 intron Sh - chrX 18043636 intron Sh - chrX 18043680 intron Sh - chrX_5_18040001 chrX_18040001 RAL-59 1365 chrX 18322643 18322655 chrX 18322734 18322745 4 90 4.5 1.0 2.8 1.1 102 chrX 18322643 intergenic CG6123 - chrX 18322694 intergenic CG6123 - chrX 18322745 intergenic CG6123 - chrX_4_18320001 chrX_18320001 RAL-59 1366 chrX 18322657 18322673 chrX 18322732 18322764 5 84 3.0 1.0 2.0 1.7 107 chrX 18322657 intergenic CG6123 - chrX 18322710 intergenic CG6123 - chrX 18322764 intergenic CG6123 - chrX_5_18320001 chrX_18320001 RAL-59 1367 chrX 18427386 18427409 chrX 18427797 18427820 5 411 1.0 1.0 1.0 2.5 434 chrX 18427386 intergenic CG42323 + chrX 18427603 intergenic not near genes chrX 18427820 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-59 1368 chrX 18453598 18453618 chrX 18453665 18453669 5 68 3.5 4.0 3.8 1.0 71 chrX 18453598 intron CG32547 - chrX 18453634 intron CG32547 - chrX 18453669 intron CG32547 - chrX_5_18450001 chrX_18450001 RAL-59 1369 chrX 18490044 18490055 chrX 18490199 18490208 5 154 1.5 7.5 4.5 0.9 164 chrX 18490044 intergenic CG15046 - chrX 18490126 intergenic not near genes chrX 18490208 intergenic not near genes chrX_5_18490001 chrX_18490001 RAL-59 1370 chrX 18555395 18555401 chrX 18556908 18556923 transib2 4 1520 1.5 1.0 1.2 1.8 1528 chrX 18555395 intron Bx + chrX 18556159 intron Bx + chrX 18556923 intron Bx + chrX_4_18555001 chrX_18555001 RAL-59 1371 chrX 18645024 18645036 chrX 18645122 18645134 4 98 2.0 1.5 1.8 1.4 110 chrX 18645024 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645134 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-59 1372 chrX 18896525 18896546 chrX 18896636 18896655 4 110 1.0 3.0 2.0 1.3 130 chrX 18896525 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896655 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-59 1373 chrX 19014361 19014393 chrX 19014440 19014471 12 79 4.0 4.5 4.2 2.3 110 chrX 19014361 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014471 intron CG43759 + chrX_12_19010001 chrX_19010001 RAL-59 1374 chrX 19060415 19060437 chrX 19065199 19065221 Doc 5 4784 0.5 1.0 0.8 2.8 4806 chrX 19060415 intron CG14190 + chrX 19062818 intron CG14190 + chrX 19065221 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-59 1375 chrX 19136556 19136583 chrX 19143476 19143502 412 4 6920 1.0 2.5 1.8 1.4 6946 chrX 19136556 intergenic not near genes chrX 19140029 intergenic not near genes chrX 19143502 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-59 1376 chrX 19176207 19176237 chrX 19176291 19176320 12 84 4.0 3.5 3.8 2.5 113 chrX 19176207 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176320 3` UTR CG7556 - chrX_12_19175001 chrX_19175001 RAL-59 1377 chrX 13057299 13057299 chrX 19242813 19242813 4 6185514 2.0 0.5 1.2 1.8 6185514 chrX 13057299 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-59 1378 chrX 19353185 19353209 chrX 19353311 19353335 7 123 5.5 4.0 4.8 1.2 150 chrX 19353185 5` UTR kek5 + chrX 19353260 5` UTR kek5 + chrX 19353335 5` UTR kek5 + chrX_7_19350001 chrX_19350001 RAL-59 1379 chrX 19380155 19380180 chrX 19380396 19380421 pogo 5 241 1.5 1.5 1.5 2.0 266 chrX 19380155 intron kek5 + chrX 19380288 intron kek5 + chrX 19380421 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-59 1380 chrX 19457172 19457190 chrX 19457269 19457292 9 102 4.5 4.5 4.5 1.6 120 chrX 19457172 intron kek5 + chrX 19457232 intron kek5 + chrX 19457292 intron kek5 + chrX_9_19455001 chrX_19455001 RAL-59 1381 chrX 19472138 19472158 chrX 19472708 19472728 jockey 7 568 0.0 2.5 1.2 3.2 590 chrX 19472138 intergenic kek5 + chrX 19472433 intergenic not near genes chrX 19472728 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-59 1382 chrX 19576558 19576592 chrX 19576636 19576670 8 78 1.5 2.0 1.8 2.9 112 chrX 19576558 intron Tao - chrX 19576614 intron Tao - chrX 19576670 intron Tao - chrX_8_19575001 chrX_19575001 RAL-59 1383 chrX 19593951 19593976 chrX 19594036 19594061 10 85 2.5 5.0 3.8 2.1 110 chrX 19593951 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594061 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-59 1384 chrX 19662031 19662054 chrX 19662254 19662277 4 223 2.5 2.5 2.5 1.1 246 chrX 19662031 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662277 intron CG14223 - chrX_4_19660001 chrX_19660001 RAL-59 1385 chrX 19710079 19710095 chrX 19711865 19711881 S-element 9 1786 5.5 4.0 4.8 1.6 1802 chrX 19710079 intron meso18E - chrX 19710980 intron meso18E - chrX 19711881 intron meso18E - chrX_9_19710001 chrX_19710001 RAL-59 1386 chrX 19897383 19897403 chrX 19897459 19897480 4 76 1.0 0.5 0.8 2.2 97 chrX 19897383 intron Hers + chrX 19897432 intron Hers + chrX 19897480 intron Hers + chrX_4_19895001 chrX_19895001 RAL-59 1387 chrX 19983864 19983890 chrX 19983944 19983970 4 80 0.5 0.0 0.2 3.3 106 chrX 19983864 intergenic not near genes chrX 19983917 intergenic not near genes chrX 19983970 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-59 1388 chrX 20041536 20041561 chrX 20041616 20041641 7 80 2.0 2.0 2.0 2.3 105 chrX 20041536 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041641 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-59 1389 chrX 20359148 20359168 chrX 20359225 20359246 4 78 2.0 1.0 1.5 1.6 98 chrX 20359148 intergenic not near genes chrX 20359197 intergenic not near genes chrX 20359246 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-59 1390 chrX 20377325 20377347 chrX 20378792 20378814 hobo 4 1467 1.0 5.0 3.0 1.0 1489 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378814 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-59 1391 chrX 20383791 20383825 chrX 20383892 20383926 22 100 3.0 2.5 2.8 5.8 135 chrX 20383791 intergenic not near genes chrX 20383858 intergenic not near genes chrX 20383926 intergenic not near genes chrX_22_20380001 chrX_20380001 RAL-59 1392 chrX 20384256 20384292 chrX 20384339 20384375 5 81 0.5 2.5 1.5 2.0 119 chrX 20384256 intergenic not near genes chrX 20384316 intergenic not near genes chrX 20384375 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-59 1393 chrX 20443169 20443193 chrX 20443245 20443269 5 76 3.0 0.0 1.5 2.0 100 chrX 20443169 exon CG1695 + chrX 20443219 intron CG1695 + chrX 20443269 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-59 1394 chrX 20940720 20940749 chrX 20942189 20942218 hobo 9 1469 5.0 4.5 4.8 1.6 1498 chrX 20940720 intergenic not near genes chrX 20941469 intergenic not near genes chrX 20942218 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-59 1395 chrX 21264729 21264763 chrX 21264805 21264839 10 75 2.0 3.5 2.8 2.6 110 chrX 21264729 intron CG32521 - chrX 21264784 intron CG32521 - chrX 21264839 intron CG32521 - chrX_10_21260001 chrX_21260001 RAL-59 1396 chrX 21455213 21455243 chrX 21455392 21455430 4 181 0.5 0.0 0.2 3.3 217 chrX 21455213 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455430 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-59 1397 chrX 21565418 21565442 chrX 21565495 21565520 7 78 1.0 1.5 1.2 3.2 102 chrX 21565418 intergenic not near genes chrX 21565469 intergenic not near genes chrX 21565520 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-59 1398 chrX 21567957 21567964 chrX 21568038 21568043 6 79 7.5 2.0 4.8 1.0 86 chrX 21567957 intergenic not near genes chrX 21568000 intergenic not near genes chrX 21568043 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-59 1399 chrX 22677293 22677328 chrX 22677502 22677537 9 209 1.0 1.5 1.2 4.1 244 chrX 22677293 intron CR44997 + chrX 22677415 intron CR44997 + chrX 22677537 intron CR44997 + chrX_9_22675001 chrX_22675001 RAL-59 1400 chrX 22771514 22771536 chrX 22774805 22774827 297 5 3291 2.5 1.0 1.8 1.8 3313 chrX 22771514 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774827 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-59 1401 chrX 22992403 22992419 chrX 22992531 22992550 6 130 0.0 1.5 0.8 3.3 147 chrX 22992403 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992550 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-59 1402 chrY 975590 975824 chrY 975707 975930 10 86 174.0 151.5 162.8 0.1 340 chrY 975590 intergenic not near genes chrY 975760 intergenic not near genes chrY 975930 intergenic not near genes chrY_10_975001 chrY_975001 RAL-59