SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47469 47477 chr2L 52574 52574 jockey 6 5101 8.0 5.5 6.8 0.8 5105 chr2L 47469 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52574 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-595 2 chr2L 91173 91207 chr2L 91249 91283 6 76 2.0 2.0 2.0 2.0 110 chr2L 91173 intergenic not near genes chr2L 91228 intergenic not near genes chr2L 91283 intergenic not near genes chr2L_6_90001 chr2L_90001 RAL-595 3 chr2L 119735 119750 chr2L 119812 119827 5 77 1.5 3.0 2.2 1.6 92 chr2L 119735 intron,intron CG11455 +,CG4822 - chr2L 119781 intron,intron CG11455 +,CG4822 - chr2L 119827 intron,exon CG11455 +,CG4822 - chr2L_5_115001 chr2L_115001 RAL-595 4 chr2L 180295 180326 chr2L 180463 180494 12 167 3.5 2.0 2.8 3.2 199 chr2L 180295 intron spen + chr2L 180394 intron spen + chr2L 180494 intron spen + chr2L_12_180001 chr2L_180001 RAL-595 5 chr2L 263316 263522 chr2L 263462 263613 9 102 5.5 5.5 5.5 1.4 297 chr2L 263316 intron,3` UTR CG3645 -,CG17075 - chr2L 263464 intron,3` UTR CG3645 -,CG17075 - chr2L 263613 intron,3` UTR CG3645 -,CG17075 - chr2L_9_260001 chr2L_260001 RAL-595 6 chr2L 297688 297710 chr2L 297788 297810 9 98 0.0 2.0 1.0 4.5 122 chr2L 297688 intergenic Pi3K21B +,Hop + chr2L 297749 intergenic Pi3K21B +,Hop + chr2L 297810 intergenic Pi3K21B +,Hop + chr2L_9_295001 chr2L_295001 RAL-595 7 chr2L 319906 319935 chr2L 319989 320020 10 85 3.5 6.0 4.8 1.7 114 chr2L 319906 intron Plc21C + chr2L 319963 intron Plc21C + chr2L 320020 intron Plc21C + chr2L_10_315001 chr2L_315001 RAL-595 8 chr2L 318776 318791 chr2L 323433 323449 6 4658 25.0 14.5 19.8 0.3 4673 chr2L 318776 intron,exon Plc21C +,CG11912 - chr2L 321112 intron,exon Plc21C +,CG11911 - chr2L 323449 intron Plc21C + chr2L_6_320001 chr2L_320001 RAL-595 9 chr2L 325126 325164 chr2L 325203 325206 11 71 4.5 3.0 3.8 2.3 80 chr2L 325126 intron Plc21C + chr2L 325166 intron Plc21C + chr2L 325206 intron Plc21C + chr2L_11_325001 chr2L_325001 RAL-595 10 chr2L 544649 544854 chr2L 544727 544937 19 79 3.5 0.5 2.0 6.3 288 chr2L 544649 5` UTR Spp - chr2L 544793 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544937 3` UTR Ets21C - chr2L_19_540001 chr2L_540001 RAL-595 11 chr2L 601257 601291 chr2L 601339 601372 9 82 2.0 1.5 1.8 3.2 115 chr2L 601257 intergenic not near genes chr2L 601314 intergenic not near genes chr2L 601372 intergenic not near genes chr2L_9_600001 chr2L_600001 RAL-595 12 chr2L 686923 686951 chr2L 695963 695991 roo 8 9040 2.5 5.0 3.8 1.7 9068 chr2L 686923 intron ds - chr2L 691457 intron ds - chr2L 695991 intron ds - chr2L_8_690001 chr2L_690001 RAL-595 13 chr2L 743583 743603 chr2L 743713 743733 11 126 8.0 3.5 5.8 1.6 150 chr2L 743583 5` UTR Eaat2 - chr2L 743658 intron Eaat2 - chr2L 743733 intron Eaat2 - chr2L_11_740001 chr2L_740001 RAL-595 14 chr2L 743604 743612 chr2L 743712 743743 4 125 7.5 3.5 5.5 0.6 139 chr2L 743604 5` UTR Eaat2 - chr2L 743674 intron Eaat2 - chr2L 743743 intron Eaat2 - chr2L_4_740001 chr2L_740001 RAL-595 15 chr2L 764567 764593 chr2L 764647 764673 10 81 0.0 3.0 1.5 4.0 106 chr2L 764567 intergenic not near genes chr2L 764620 intergenic not near genes chr2L 764673 intergenic not near genes chr2L_10_760001 chr2L_760001 RAL-595 16 chr2L 853325 853348 chr2L 853411 853434 5 86 5.0 2.0 3.5 1.1 109 chr2L 853325 intron kraken + chr2L 853380 intron kraken + chr2L 853434 intron kraken + chr2L_5_850001 chr2L_850001 RAL-595 17 chr2L 922464 922480 chr2L 922545 922561 6 81 1.0 1.5 1.2 2.7 97 chr2L 922464 intergenic CG4341 + chr2L 922512 intergenic CG4341 + chr2L 922561 intergenic CG4341 + chr2L_6_920001 chr2L_920001 RAL-595 18 chr2L 1038626 1038639 chr2L 1038694 1038717 9 75 3.0 4.5 3.8 1.9 91 chr2L 1038626 intron,3` UTR IA-2 -,CG4415 + chr2L 1038672 intron,3` UTR IA-2 -,CG4415 + chr2L 1038717 intron IA-2 - chr2L_9_1035001 chr2L_1035001 RAL-595 19 chr2L 1220135 1220158 chr2L 1227599 1227624 blood 6 7465 0.5 1.0 0.8 3.3 7489 chr2L 1220135 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227624 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-595 20 chr2L 1300740 1300761 chr2L 1300830 1300851 6 90 0.5 0.5 0.5 4.0 111 chr2L 1300740 intergenic not near genes chr2L 1300796 intergenic not near genes chr2L 1300851 intergenic not near genes chr2L_6_1300001 chr2L_1300001 RAL-595 21 chr2L 1312885 1312902 chr2L 1312970 1312972 5 82 1.5 2.0 1.8 1.8 87 chr2L 1312885 intergenic not near genes chr2L 1312928 intergenic not near genes chr2L 1312972 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-595 22 chr2L 1393995 1394020 chr2L 1394072 1394097 9 77 1.0 2.5 1.8 3.2 102 chr2L 1393995 intron lea - chr2L 1394046 intron lea - chr2L 1394097 intron lea - chr2L_9_1390001 chr2L_1390001 RAL-595 23 chr2L 1446598 1446627 chr2L 1446771 1446801 5 174 1.5 1.5 1.5 2.0 203 chr2L 1446598 intergenic not near genes chr2L 1446700 intergenic not near genes chr2L 1446801 intergenic not near genes chr2L_5_1445001 chr2L_1445001 RAL-595 24 chr2L 1508057 1508273 chr2L 1508140 1508360 8 85 1.5 2.5 2.0 2.7 303 chr2L 1508057 intergenic not near genes chr2L 1508208 intergenic not near genes chr2L 1508360 intergenic not near genes chr2L_8_1505001 chr2L_1505001 RAL-595 25 chr2L 1596644 1596675 chr2L 1596728 1596753 7 83 2.0 2.5 2.2 2.2 109 chr2L 1596644 intron,intron haf +,CG31935 - chr2L 1596698 intron,intron haf +,CG31935 - chr2L 1596753 intron,intron haf +,CG31935 - chr2L_7_1595001 chr2L_1595001 RAL-595 26 chr2L 1678982 1679009 chr2L 1686447 1686474 blood 8 7464 1.5 1.5 1.5 3.2 7492 chr2L 1678982 intron chinmo + chr2L 1682728 intron chinmo + chr2L 1686474 intron chinmo + chr2L_8_1680001 chr2L_1680001 RAL-595 27 chr2L 1711363 1711383 chr2L 1711687 1711691 mdg3 5 319 2.5 3.0 2.8 1.3 328 chr2L 1711363 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711527 3` UTR frtz - chr2L 1711691 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-595 28 chr2L 1795462 1795470 chr2L 1795544 1795555 5 84 3.5 1.0 2.2 1.6 93 chr2L 1795462 intergenic not near genes chr2L 1795508 intergenic not near genes chr2L 1795555 intergenic not near genes chr2L_5_1795001 chr2L_1795001 RAL-595 29 chr2L 1795472 1795481 chr2L 1795540 1795569 4 82 2.5 1.0 1.8 1.4 97 chr2L 1795472 intergenic not near genes chr2L 1795520 intergenic not near genes chr2L 1795569 intergenic not near genes chr2L_4_1795001 chr2L_1795001 RAL-595 30 chr2L 1828404 1828433 chr2L 1828488 1828517 7 83 1.0 0.0 0.5 4.7 113 chr2L 1828404 intergenic not near genes chr2L 1828460 intergenic not near genes chr2L 1828517 intergenic not near genes chr2L_7_1825001 chr2L_1825001 RAL-595 31 chr2L 1948622 1948656 chr2L 1948729 1948763 6 107 0.0 0.0 0.0 6.0 141 chr2L 1948622 intergenic not near genes chr2L 1948692 intergenic not near genes chr2L 1948763 intergenic not near genes chr2L_6_1945001 chr2L_1945001 RAL-595 32 chr2L 1994588 1994613 chr2L 1994818 1994841 7 230 2.0 0.5 1.2 3.2 253 chr2L 1994588 intergenic not near genes chr2L 1994714 intergenic not near genes chr2L 1994841 intergenic not near genes chr2L_7_1990001 chr2L_1990001 RAL-595 33 chr2L 2100377 2100405 chr2L 2109526 2109556 roo 11 9148 1.5 3.5 2.5 3.1 9179 chr2L 2100377 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109556 intron dpr3 - chr2L_11_2100001 chr2L_2100001 RAL-595 34 chr2L 2123737 2123768 chr2L 2123820 2123852 13 78 2.0 2.5 2.2 4.1 115 chr2L 2123737 intergenic not near genes chr2L 2123794 intergenic not near genes chr2L 2123852 intergenic not near genes chr2L_13_2120001 chr2L_2120001 RAL-595 35 chr2L 2207667 2207691 chr2L 2207748 2207772 6 80 5.0 5.0 5.0 1.0 105 chr2L 2207667 exon CG33124 - chr2L 2207720 exon CG33124 - chr2L 2207772 exon CG33124 - chr2L_6_2205001 chr2L_2205001 RAL-595 36 chr2L 2250421 2250443 chr2L 2251188 2251210 5 762 2.5 0.0 1.2 2.3 789 chr2L 2250421 intergenic Ser12 - chr2L 2250816 exon Ser12 - chr2L 2251210 exon Ser12 - chr2L_5_2250001 chr2L_2250001 RAL-595 37 chr2L 2262308 2262331 chr2L 2262385 2262408 8 77 1.5 0.0 0.8 4.4 100 chr2L 2262308 intergenic not near genes chr2L 2262358 intergenic not near genes chr2L 2262408 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-595 38 chr2L 2330886 2330901 chr2L 2330975 2330990 4 89 0.0 3.0 1.5 1.6 104 chr2L 2330886 intron,intron CG9967 -,eys + chr2L 2330938 intron,intron CG9967 -,eys + chr2L 2330990 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-595 39 chr2L 2506387 2506401 chr2L 2506475 2506488 5 88 5.5 3.0 4.2 1.0 101 chr2L 2506387 intergenic not near genes chr2L 2506438 intergenic not near genes chr2L 2506488 intergenic not near genes chr2L_5_2505001 chr2L_2505001 RAL-595 40 chr2L 2506404 2506418 chr2L 2506474 2506506 8 84 1.5 3.0 2.2 2.5 102 chr2L 2506404 intergenic not near genes chr2L 2506455 intergenic not near genes chr2L 2506506 intergenic not near genes chr2L_8_2505001 chr2L_2505001 RAL-595 41 chr2L 2541468 2541479 chr2L 2541550 2541562 4 83 0.0 2.0 1.0 2.0 94 chr2L 2541468 intergenic not near genes chr2L 2541515 intergenic not near genes chr2L 2541562 intergenic not near genes chr2L_4_2540001 chr2L_2540001 RAL-595 42 chr2L 2637227 2637261 chr2L 2637325 2637358 8 97 1.5 5.0 3.2 1.9 131 chr2L 2637227 intergenic not near genes chr2L 2637292 intergenic not near genes chr2L 2637358 intergenic not near genes chr2L_8_2635001 chr2L_2635001 RAL-595 43 chr2L 2661193 2661234 chr2L 2663031 2663068 I-element 9 1829 2.0 0.5 1.2 4.1 1875 chr2L 2661193 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663068 intergenic not near genes chr2L_9_2660001 chr2L_2660001 RAL-595 44 chr2L 2667630 2667654 chr2L 2667708 2667733 5 79 6.5 2.5 4.5 0.9 103 chr2L 2667630 intergenic not near genes chr2L 2667682 intergenic not near genes chr2L 2667733 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-595 45 chr2L 2933309 2933320 chr2L 2935486 2935497 pogo 5 2176 5.0 4.5 4.8 0.9 2188 chr2L 2933309 intron lilli + chr2L 2934403 intron lilli + chr2L 2935497 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-595 46 chr2L 2975641 2975675 chr2L 2978946 2978981 14 3306 37.0 33.5 35.2 0.4 3340 chr2L 2975641 exon CG9641 - chr2L 2977311 exon CG3165 + chr2L 2978981 exon CG9643 - chr2L_14_2975001 chr2L_2975001 RAL-595 47 chr2L 3046429 3046443 chr2L 3046577 3046591 4 148 3.0 0.0 1.5 1.6 162 chr2L 3046429 intron v(2)k05816 + chr2L 3046510 intron v(2)k05816 + chr2L 3046591 intron v(2)k05816 + chr2L_4_3045001 chr2L_3045001 RAL-595 48 chr2L 3125009 3125045 chr2L 3125093 3125126 8 83 0.0 2.5 1.2 3.6 117 chr2L 3125009 intron toc - chr2L 3125068 intron toc - chr2L 3125126 exon toc - chr2L_8_3125001 chr2L_3125001 RAL-595 49 chr2L 3140523 3140543 chr2L 3140602 3140622 5 79 3.5 3.5 3.5 1.1 99 chr2L 3140523 intron toc - chr2L 3140572 intron toc - chr2L 3140622 intron toc - chr2L_5_3140001 chr2L_3140001 RAL-595 50 chr2L 3192210 3192237 chr2L 3192321 3192348 6 110 2.5 3.5 3.0 1.5 138 chr2L 3192210 exon CG34393 - chr2L 3192279 intron CG34393 - chr2L 3192348 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-595 51 chr2L 3271150 3271172 chr2L 3271272 3271294 8 121 4.5 1.0 2.8 2.1 144 chr2L 3271150 exon CG3347 + chr2L 3271222 exon CG3347 + chr2L 3271294 exon CG3347 + chr2L_8_3270001 chr2L_3270001 RAL-595 52 chr2L 3355443 3355463 chr2L 3355516 3355542 4 77 1.0 4.5 2.8 1.1 99 chr2L 3355443 intergenic not near genes chr2L 3355492 intergenic not near genes chr2L 3355542 intergenic not near genes chr2L_4_3355001 chr2L_3355001 RAL-595 53 chr2L 3385269 3385293 chr2L 3385592 3385602 7 320 1.5 1.0 1.2 3.2 333 chr2L 3385269 intergenic not near genes chr2L 3385436 intergenic not near genes chr2L 3385602 intergenic not near genes chr2L_7_3385001 chr2L_3385001 RAL-595 54 chr2L 3494419 3494455 chr2L 3494541 3494578 6 122 4.0 0.5 2.2 1.9 159 chr2L 3494419 3` UTR tim - chr2L 3494498 3` UTR tim - chr2L 3494578 3` UTR tim - chr2L_6_3490001 chr2L_3490001 RAL-595 55 chr2L 3649788 3649820 chr2L 3654991 3655023 copia 7 5203 0.0 2.5 1.2 3.2 5235 chr2L 3649788 intron for - chr2L 3652406 intron for - chr2L 3655023 intron for - chr2L_7_3650001 chr2L_3650001 RAL-595 56 chr2L 3673885 3673902 chr2L 3673986 3674003 11 101 1.5 4.0 2.8 2.9 118 chr2L 3673885 intron CG34340 + chr2L 3673944 intron CG34340 + chr2L 3674003 intron CG34340 + chr2L_11_3670001 chr2L_3670001 RAL-595 57 chr2L 3784705 3784722 chr2L 3786362 3786383 5 1661 12.0 10.0 11.0 0.4 1678 chr2L 3784705 intergenic CG31960 + chr2L 3785544 3` UTR CG31960 + chr2L 3786383 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-595 58 chr2L 3943797 3943819 chr2L 3943888 3943910 4 91 1.0 2.5 1.8 1.4 113 chr2L 3943797 intron fred - chr2L 3943854 intron fred - chr2L 3943910 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-595 59 chr2L 4028697 4028715 chr2L 4028776 4028793 5 78 0.5 2.5 1.5 2.0 96 chr2L 4028697 intergenic not near genes chr2L 4028745 intergenic not near genes chr2L 4028793 intergenic not near genes chr2L_5_4025001 chr2L_4025001 RAL-595 60 chr2L 4041374 4041404 chr2L 4048742 4048766 4 7363 8.0 4.5 6.2 0.6 7392 chr2L 4041374 intron ed + chr2L 4045070 intron ed + chr2L 4048766 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-595 61 chr2L 4066045 4066063 chr2L 4068870 4068888 Juan 6 2825 1.0 4.5 2.8 1.6 2843 chr2L 4066045 intron ed + chr2L 4067466 intron ed + chr2L 4068888 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-595 62 chr2L 4166392 4166408 chr2L 4166475 4166490 6 82 0.5 2.5 1.5 2.4 98 chr2L 4166392 intergenic Or24a - chr2L 4166441 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-595 63 chr2L 4181298 4181304 chr2L 4183930 4183936 Burdock 5 2632 1.0 3.5 2.2 1.6 2638 chr2L 4181298 intergenic not near genes chr2L 4182617 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-595 64 chr2L 4186321 4186344 chr2L 4186387 4186415 5 65 6.5 0.5 3.5 1.1 94 chr2L 4186321 3` UTR CG31961 - chr2L 4186368 3` UTR CG31961 - chr2L 4186415 3` UTR CG31961 - chr2L_5_4185001 chr2L_4185001 RAL-595 65 chr2L 4229621 4229636 chr2L 4229724 4229738 4 102 3.5 3.5 3.5 0.9 117 chr2L 4229621 intergenic CR44608 + chr2L 4229680 intergenic CR44608 + chr2L 4229738 intergenic CR44608 + chr2L_4_4225001 chr2L_4225001 RAL-595 66 chr2L 4242603 4242624 chr2L 4242682 4242703 4 79 3.0 1.5 2.2 1.2 100 chr2L 4242603 intergenic CR44058 + chr2L 4242653 intergenic CR44058 + chr2L 4242703 intergenic CR44058 + chr2L_4_4240001 chr2L_4240001 RAL-595 67 chr2L 4317882 4317913 chr2L 4317959 4317991 11 75 1.0 2.5 1.8 3.9 109 chr2L 4317882 intron tutl + chr2L 4317936 intron tutl + chr2L 4317991 intron tutl + chr2L_11_4315001 chr2L_4315001 RAL-595 68 chr2L 4351473 4351497 chr2L 4351548 4351564 8 74 1.0 3.0 2.0 2.7 91 chr2L 4351473 intergenic CR44700 + chr2L 4351518 intergenic CR44700 + chr2L 4351564 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-595 69 chr2L 4439013 4439036 chr2L 4439098 4439122 4 86 2.5 3.5 3.0 1.0 109 chr2L 4439013 intron CG15431 - chr2L 4439068 intron CG15431 - chr2L 4439122 5` UTR CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-595 70 chr2L 4477135 4477167 chr2L 4477328 4477360 9 196 21.0 14.5 17.8 0.5 225 chr2L 4477135 intergenic ine -,dp - chr2L 4477248 intergenic dp -,ine - chr2L 4477360 intergenic dp -,ine - chr2L_9_4475001 chr2L_4475001 RAL-595 71 chr2L 4601711 4601735 chr2L 4609148 4609176 mdg1 9 7440 1.0 3.5 2.2 2.8 7465 chr2L 4601711 intron dp - chr2L 4605444 intron dp - chr2L 4609176 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-595 72 chr2L 4672082 4672112 chr2L 4672159 4672189 7 76 0.0 3.0 1.5 2.8 107 chr2L 4672082 intergenic not near genes chr2L 4672136 intergenic not near genes chr2L 4672189 intergenic not near genes chr2L_7_4670001 chr2L_4670001 RAL-595 73 chr2L 4686287 4686303 chr2L 4686599 4686620 12 314 5.0 9.0 7.0 1.5 333 chr2L 4686287 exon CG11929 + chr2L 4686454 exon CG11929 + chr2L 4686620 exon CG11929 + chr2L_12_4685001 chr2L_4685001 RAL-595 74 chr2L 4841079 4841091 chr2L 4841153 4841166 5 75 7.0 3.5 5.2 0.8 87 chr2L 4841079 intron CG12194 + chr2L 4841122 intron CG12194 + chr2L 4841166 exon CG12194 + chr2L_5_4840001 chr2L_4840001 RAL-595 75 chr2L 4841095 4841103 chr2L 4841148 4841167 7 69 5.5 2.5 4.0 1.4 72 chr2L 4841095 intron CG12194 + chr2L 4841131 intron CG12194 + chr2L 4841167 exon CG12194 + chr2L_7_4840001 chr2L_4840001 RAL-595 76 chr2L 5237904 5237938 chr2L 5237994 5238028 12 82 1.0 7.5 4.2 2.3 124 chr2L 5237904 intron tkv - chr2L 5237966 intron tkv - chr2L 5238028 intron tkv - chr2L_12_5235001 chr2L_5235001 RAL-595 77 chr2L 5485067 5485078 chr2L 5485145 5485158 6 79 0.5 1.5 1.0 3.0 91 chr2L 5485067 intergenic not near genes chr2L 5485112 intergenic not near genes chr2L 5485158 intergenic not near genes chr2L_6_5485001 chr2L_5485001 RAL-595 78 chr2L 5500057 5500070 chr2L 5500143 5500156 4 86 2.0 4.0 3.0 1.0 99 chr2L 5500057 intergenic not near genes chr2L 5500106 intergenic not near genes chr2L 5500156 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-595 79 chr2L 5582328 5582342 chr2L 5582418 5582432 4 90 1.5 1.5 1.5 1.6 104 chr2L 5582328 intergenic not near genes chr2L 5582380 intergenic not near genes chr2L 5582432 intergenic not near genes chr2L_4_5580001 chr2L_5580001 RAL-595 80 chr2L 5709065 5709085 chr2L 5709224 5709244 7 159 1.5 0.0 0.8 3.9 179 chr2L 5709065 intron CG7236 + chr2L 5709154 intron CG7236 + chr2L 5709244 intron CG7236 + chr2L_7_5705001 chr2L_5705001 RAL-595 81 chr2L 5774591 5774602 chr2L 5774805 5774806 6 211 6.0 2.0 4.0 1.2 215 chr2L 5774591 intron CG9171 - chr2L 5774698 intron CG9171 - chr2L 5774806 intron CG9171 - chr2L_6_5770001 chr2L_5770001 RAL-595 82 chr2L 5789970 5789983 chr2L 5790162 5790182 4 197 1.0 0.0 0.5 2.7 212 chr2L 5789970 intron CG9171 - chr2L 5790076 intron CG9171 - chr2L 5790182 intron CG9171 - chr2L_4_5790001 chr2L_5790001 RAL-595 83 chr2L 5826051 5826069 chr2L 5826133 5826151 4 82 0.5 1.0 0.8 2.2 100 chr2L 5826051 intron TrissinR + chr2L 5826101 intron TrissinR + chr2L 5826151 intron TrissinR + chr2L_4_5825001 chr2L_5825001 RAL-595 84 chr2L 5827713 5827730 chr2L 5836719 5836721 roo 8 9003 6.5 1.0 3.8 1.7 9008 chr2L 5827713 intron TrissinR + chr2L 5832217 intron TrissinR + chr2L 5836721 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-595 85 chr2L 5989038 5989063 chr2L 5989108 5989138 4 72 1.5 0.0 0.8 2.2 100 chr2L 5989038 intergenic ifc +,lid - chr2L 5989088 intergenic ifc +,lid - chr2L 5989138 intergenic lid -,ifc + chr2L_4_5985001 chr2L_5985001 RAL-595 86 chr2L 5993331 5993350 chr2L 5993422 5993441 8 90 7.0 1.5 4.2 1.5 110 chr2L 5993331 exon lid - chr2L 5993386 intron lid - chr2L 5993441 intron lid - chr2L_8_5990001 chr2L_5990001 RAL-595 87 chr2L 6021625 6021641 chr2L 6021696 6021719 4 76 4.0 0.0 2.0 1.3 94 chr2L 6021625 exon CG13996 + chr2L 6021672 3` UTR CG13996 + chr2L 6021719 intergenic CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-595 88 chr2L 6050440 6050467 chr2L 6050544 6050571 4 104 0.5 1.0 0.8 2.2 131 chr2L 6050440 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050571 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-595 89 chr2L 6363159 6363179 chr2L 6366070 6366101 Burdock 7 2918 2.5 1.5 2.0 2.3 2942 chr2L 6363159 intergenic not near genes chr2L 6364630 intergenic not near genes chr2L 6366101 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-595 90 chr2L 6387898 6387919 chr2L 6387989 6388010 5 89 3.0 0.0 1.5 2.0 112 chr2L 6387898 intron CG42368 - chr2L 6387954 intron CG42368 - chr2L 6388010 intron CG42368 - chr2L_5_6385001 chr2L_6385001 RAL-595 91 chr2L 6426859 6426886 chr2L 6445119 6445145 roo 8 18259 2.5 7.5 5.0 1.3 18286 chr2L 6426859 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-595 92 chr2L 6618968 6618976 chr2L 6619060 6619068 6 92 0.0 2.5 1.2 2.7 100 chr2L 6618968 intron CG11320 - chr2L 6619018 intron CG11320 - chr2L 6619068 intron CG11320 - chr2L_6_6615001 chr2L_6615001 RAL-595 93 chr2L 6746097 6746106 chr2L 6746173 6746182 7 76 0.5 1.0 0.8 3.9 85 chr2L 6746097 intron CG11221 + chr2L 6746140 intron CG11221 + chr2L 6746182 intron CG11221 + chr2L_7_6745001 chr2L_6745001 RAL-595 94 chr2L 6799537 6799570 chr2L 6799623 6799658 5 88 0.5 0.5 0.5 3.3 121 chr2L 6799537 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799658 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-595 95 chr2L 6850395 6850428 chr2L 6850501 6850534 5 106 1.5 2.5 2.0 1.7 139 chr2L 6850395 intergenic not near genes chr2L 6850464 intergenic not near genes chr2L 6850534 intergenic not near genes chr2L_5_6850001 chr2L_6850001 RAL-595 96 chr2L 6876785 6876809 chr2L 6882972 6882991 diver 8 6185 2.5 7.0 4.8 1.4 6206 chr2L 6876785 intron Nlg2 + chr2L 6879888 intron Nlg2 + chr2L 6882991 intron Nlg2 + chr2L_8_6875001 chr2L_6875001 RAL-595 97 chr2L 6883745 6883772 chr2L 6883831 6883858 7 85 2.0 2.0 2.0 2.3 113 chr2L 6883745 intron Nlg2 + chr2L 6883802 intron Nlg2 + chr2L 6883858 intron Nlg2 + chr2L_7_6880001 chr2L_6880001 RAL-595 98 chr2L 7045848 7045874 chr2L 7045930 7045956 7 80 3.0 4.0 3.5 1.6 108 chr2L 7045848 intron milt + chr2L 7045902 intron milt + chr2L 7045956 intron milt + chr2L_7_7045001 chr2L_7045001 RAL-595 99 chr2L 7111770 7111789 chr2L 7111855 7111874 4 85 0.5 0.0 0.2 3.3 104 chr2L 7111770 intron Pvf3 - chr2L 7111822 intron Pvf3 - chr2L 7111874 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-595 100 chr2L 7301308 7301326 chr2L 7301391 7301409 4 83 2.0 2.0 2.0 1.3 101 chr2L 7301308 intergenic not near genes chr2L 7301358 intergenic not near genes chr2L 7301409 intergenic not near genes chr2L_4_7300001 chr2L_7300001 RAL-595 101 chr2L 7343341 7343355 chr2L 7350440 7350471 roo 9 7113 6.0 3.0 4.5 1.6 7130 chr2L 7343341 intron Wnt6 + chr2L 7346906 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-595 102 chr2L 7513776 7513798 chr2L 7513853 7513874 7 77 0.5 3.0 1.8 2.5 98 chr2L 7513776 intron RapGAP1 - chr2L 7513825 intron RapGAP1 - chr2L 7513874 intron RapGAP1 - chr2L_7_7510001 chr2L_7510001 RAL-595 103 chr2L 7517805 7517816 chr2L 7517896 7517906 4 90 5.0 0.5 2.8 1.1 101 chr2L 7517805 intron RapGAP1 - chr2L 7517856 intron RapGAP1 - chr2L 7517906 intron RapGAP1 - chr2L_4_7515001 chr2L_7515001 RAL-595 104 chr2L 7579900 7579922 chr2L 7579982 7580004 8 80 1.5 3.0 2.2 2.5 104 chr2L 7579900 intergenic not near genes chr2L 7579952 intergenic not near genes chr2L 7580004 intergenic not near genes chr2L_8_7575001 chr2L_7575001 RAL-595 105 chr2L 7702898 7702916 chr2L 7703065 7703084 7 166 3.5 3.0 3.2 1.7 186 chr2L 7702898 5` UTR Tep3 + chr2L 7702991 5` UTR Tep3 + chr2L 7703084 5` UTR Tep3 + chr2L_7_7700001 chr2L_7700001 RAL-595 106 chr2L 7921115 7921118 chr2L 7921189 7921193 4 80 5.5 2.0 3.8 0.8 78 chr2L 7921115 intron Snoo - chr2L 7921154 intron Snoo - chr2L 7921193 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-595 107 chr2L 7922750 7922769 chr2L 7922829 7922844 5 76 0.5 2.5 1.5 2.0 94 chr2L 7922750 intron Snoo - chr2L 7922797 intron Snoo - chr2L 7922844 intron Snoo - chr2L_5_7920001 chr2L_7920001 RAL-595 108 chr2L 7959045 7959061 chr2L 7960456 7960472 pogo 5 1411 0.5 0.0 0.2 4.2 1427 chr2L 7959045 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960472 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-595 109 chr2L 7977106 7977112 chr2L 7984079 7984082 297 5 6974 0.5 1.5 1.0 2.5 6976 chr2L 7977106 intron Snoo - chr2L 7980594 intron Snoo - chr2L 7984082 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-595 110 chr2L 8044099 8044126 chr2L 8044177 8044205 5 76 1.5 1.0 1.2 2.3 106 chr2L 8044099 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044205 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-595 111 chr2L 8336937 8336966 chr2L 8337016 8337026 4 74 0.0 2.5 1.2 1.8 89 chr2L 8336937 intergenic not near genes chr2L 8336982 intergenic not near genes chr2L 8337026 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-595 112 chr2L 8723113 8723138 chr2L 8731490 8731515 Tirant 4 8377 3.0 1.5 2.2 1.2 8402 chr2L 8723113 intron raw - chr2L 8727314 intron raw - chr2L 8731515 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-595 113 chr2L 8799801 8799831 chr2L 8799917 8799947 6 114 3.0 2.0 2.5 1.7 146 chr2L 8799801 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799947 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-595 114 chr2L 8939667 8939693 chr2L 8939747 8939773 6 80 2.0 1.5 1.8 2.1 106 chr2L 8939667 3` UTR Tsp29Fb + chr2L 8939720 3` UTR Tsp29Fb + chr2L 8939773 intergenic CG9510 -,Tsp29Fb + chr2L_6_8935001 chr2L_8935001 RAL-595 115 chr2L 9068174 9068210 chr2L 9068251 9068254 10 74 0.0 0.5 0.2 8.3 80 chr2L 9068174 intron CG31708 - chr2L 9068214 intron CG31708 - chr2L 9068254 intron CG31708 - chr2L_10_9065001 chr2L_9065001 RAL-595 116 chr2L 9073277 9073301 chr2L 9073353 9073370 6 81 0.5 1.5 1.0 3.0 93 chr2L 9073277 intergenic not near genes chr2L 9073324 intergenic not near genes chr2L 9073370 intergenic not near genes chr2L_6_9070001 chr2L_9070001 RAL-595 117 chr2L 9084337 9084340 chr2L 16217660 16217660 5 7133321 9.0 10.5 9.8 0.5 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-595 118 chr2L 9297381 9297399 chr2L 9297458 9297476 4 77 1.5 1.5 1.5 1.6 95 chr2L 9297381 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297476 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-595 119 chr2L 9456932 9456954 chr2L 9457012 9457032 7 80 1.0 3.0 2.0 2.3 100 chr2L 9456932 intron numb + chr2L 9456982 intron numb + chr2L 9457032 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-595 120 chr2L 9610108 9610146 chr2L 9610187 9610207 13 77 0.5 1.0 0.8 7.2 99 chr2L 9610108 intron gcm2 + chr2L 9610158 intron gcm2 + chr2L 9610207 intron gcm2 + chr2L_13_9610001 chr2L_9610001 RAL-595 121 chr2L 9620811 9620834 chr2L 9620890 9620915 8 81 0.5 1.5 1.0 4.0 104 chr2L 9620811 intron GlcAT-S + chr2L 9620863 intron GlcAT-S + chr2L 9620915 intron GlcAT-S + chr2L_8_9620001 chr2L_9620001 RAL-595 122 chr2L 9686345 9686377 chr2L 9686429 9686451 16 78 4.5 1.0 2.8 4.2 106 chr2L 9686345 intron Pka-C1 - chr2L 9686398 intron Pka-C1 - chr2L 9686451 intron Pka-C1 - chr2L_16_9685001 chr2L_9685001 RAL-595 123 chr2L 9730991 9730999 chr2L 9731069 9731082 4 82 0.5 0.0 0.2 3.3 91 chr2L 9730991 intron Nckx30C - chr2L 9731036 intron Nckx30C - chr2L 9731082 intron Nckx30C - chr2L_4_9730001 chr2L_9730001 RAL-595 124 chr2L 9836401 9836420 chr2L 9836478 9836488 5 77 2.0 5.0 3.5 1.1 87 chr2L 9836401 intron nAChRalpha6 - chr2L 9836444 intron nAChRalpha6 - chr2L 9836488 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-595 125 chr2L 9892503 9892523 chr2L 9892579 9892599 5 76 3.0 1.0 2.0 1.7 96 chr2L 9892503 intron mtDNA-helicase - chr2L 9892551 intron mtDNA-helicase - chr2L 9892599 intron mtDNA-helicase - chr2L_5_9890001 chr2L_9890001 RAL-595 126 chr2L 9973729 9973751 chr2L 9980847 9980870 HMS-Beagle 7 7119 1.5 2.0 1.8 2.5 7141 chr2L 9973729 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980870 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-595 127 chr2L 10045825 10045831 chr2L 10046420 10046426 4 594 4.0 3.5 3.8 0.8 601 chr2L 10045825 intergenic not near genes chr2L 10046126 intergenic not near genes chr2L 10046426 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-595 128 chr2L 10133053 10133081 chr2L 10133128 10133164 4 76 2.5 1.0 1.8 1.4 111 chr2L 10133053 intron CG44153 - chr2L 10133108 intron CG44153 - chr2L 10133164 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-595 129 chr2L 10137828 10137834 chr2L 10137906 10137912 4 78 3.0 3.5 3.2 1.0 84 chr2L 10137828 intron CG44153 - chr2L 10137870 intron CG44153 - chr2L 10137912 intron CG44153 - chr2L_4_10135001 chr2L_10135001 RAL-595 130 chr2L 10153202 10153234 chr2L 10153280 10153313 9 78 0.0 1.5 0.8 5.0 111 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153313 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-595 131 chr2L 10156324 10156355 chr2L 10163794 10163824 blood 10 7465 2.0 2.5 2.2 3.1 7500 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_10_10160001 chr2L_10160001 RAL-595 132 chr2L 10168633 10168646 chr2L 10169063 10169083 4 436 0.0 1.0 0.5 2.7 450 chr2L 10168633 intron CG44153 - chr2L 10168858 intron CG44153 - chr2L 10169083 intron CG44153 - chr2L_4_10165001 chr2L_10165001 RAL-595 133 chr2L 10421314 10421325 chr2L 10421371 10421395 5 65 1.5 1.0 1.2 2.3 81 chr2L 10421314 exon pie - chr2L 10421354 exon pie - chr2L 10421395 exon pie - chr2L_5_10420001 chr2L_10420001 RAL-595 134 chr2L 10558875 10558905 chr2L 10558957 10558988 10 82 1.0 0.0 0.5 6.7 113 chr2L 10558875 intron Trim9 + chr2L 10558932 intron Trim9 + chr2L 10558988 intron Trim9 + chr2L_10_10555001 chr2L_10555001 RAL-595 135 chr2L 10625660 10625687 chr2L 10625901 10625928 6 237 3.5 1.5 2.5 1.7 268 chr2L 10625660 intron Trim9 + chr2L 10625794 intron Trim9 + chr2L 10625928 intron Trim9 + chr2L_6_10625001 chr2L_10625001 RAL-595 136 chr2L 10640649 10640658 chr2L 10640738 10640747 6 88 7.5 5.5 6.5 0.8 98 chr2L 10640649 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640747 exon CG31872 + chr2L_6_10640001 chr2L_10640001 RAL-595 137 chr2L 10647599 10647608 chr2L 10647724 10647732 5 125 8.5 17.0 12.8 0.4 133 chr2L 10647599 exon CG17097 + chr2L 10647666 exon CG17097 + chr2L 10647732 exon CG17097 + chr2L_5_10645001 chr2L_10645001 RAL-595 138 chr2L 10705460 10705477 chr2L 10705538 10705559 13 81 3.5 4.5 4.0 2.6 99 chr2L 10705460 exon Lip2 - chr2L 10705510 intron Lip2 - chr2L 10705559 intron Lip2 - chr2L_13_10705001 chr2L_10705001 RAL-595 139 chr2L 10793316 10793345 chr2L 10793393 10793422 6 77 0.5 0.5 0.5 4.0 106 chr2L 10793316 intron CG31869 - chr2L 10793369 intron CG31869 - chr2L 10793422 intron CG31869 - chr2L_6_10790001 chr2L_10790001 RAL-595 140 chr2L 10862865 10862869 chr2L 10864457 10864481 Rt1c 6 1608 1.0 2.0 1.5 2.4 1616 chr2L 10862865 3` UTR CR43807 - chr2L 10863673 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-595 141 chr2L 10873403 10873410 chr2L 10873480 10873487 5 77 2.0 0.0 1.0 2.5 84 chr2L 10873403 intergenic not near genes chr2L 10873445 intergenic not near genes chr2L 10873487 intergenic not near genes chr2L_5_10870001 chr2L_10870001 RAL-595 142 chr2L 11418660 11418677 chr2L 11418739 11418756 7 78 3.0 4.0 3.5 1.6 96 chr2L 11418660 intergenic not near genes chr2L 11418708 intergenic not near genes chr2L 11418756 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-595 143 chr2L 11485693 11485702 chr2L 11485769 11485778 5 76 3.0 0.0 1.5 2.0 85 chr2L 11485693 exon,5` UTR CG43355 +,sala + chr2L 11485736 3` UTR,5` UTR CG43355 +,sala + chr2L 11485778 intron,intron CG43355 +,sala + chr2L_5_11485001 chr2L_11485001 RAL-595 144 chr2L 11563637 11563653 chr2L 11568841 11568857 copia 5 5204 4.0 1.0 2.5 1.4 5220 chr2L 11563637 intergenic not near genes chr2L 11566247 intergenic not near genes chr2L 11568857 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-595 145 chr2L 11713509 11713533 chr2L 11720976 11721000 blood 10 7468 3.0 2.5 2.8 2.6 7491 chr2L 11713509 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721000 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-595 146 chr2L 11892789 11892809 chr2L 11892881 11892898 9 90 6.0 3.0 4.5 1.6 109 chr2L 11892789 intron Pde1c - chr2L 11892844 intron Pde1c - chr2L 11892898 intron Pde1c - chr2L_9_11890001 chr2L_11890001 RAL-595 147 chr2L 12121618 12121630 chr2L 12121710 12121723 4 93 2.0 0.0 1.0 2.0 105 chr2L 12121618 intron CG17211 + chr2L 12121670 intron CG17211 + chr2L 12121723 intron CG17211 + chr2L_4_12120001 chr2L_12120001 RAL-595 148 chr2L 12131469 12131493 chr2L 12131565 12131589 4 96 1.5 1.0 1.2 1.8 120 chr2L 12131469 intron rho-6 - chr2L 12131529 intron rho-6 - chr2L 12131589 intron rho-6 - chr2L_4_12130001 chr2L_12130001 RAL-595 149 chr2L 12266112 12266130 chr2L 12266194 12266212 5 82 1.5 1.5 1.5 2.0 100 chr2L 12266112 intron aret + chr2L 12266162 intron aret + chr2L 12266212 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-595 150 chr2L 12299614 12299643 chr2L 12299689 12299720 7 76 2.0 1.5 1.8 2.5 106 chr2L 12299614 intron aret + chr2L 12299667 intron aret + chr2L 12299720 intron aret + chr2L_7_12295001 chr2L_12295001 RAL-595 151 chr2L 12403271 12403296 chr2L 12403451 12403475 4 180 1.0 0.0 0.5 2.7 204 chr2L 12403271 3` UTR vir-1 - chr2L 12403373 3` UTR vir-1 - chr2L 12403475 3` UTR vir-1 - chr2L_4_12400001 chr2L_12400001 RAL-595 152 chr2L 12418870 12418887 chr2L 12418965 12418982 4 95 2.0 0.0 1.0 2.0 112 chr2L 12418870 intron vir-1 - chr2L 12418926 intron vir-1 - chr2L 12418982 intron vir-1 - chr2L_4_12415001 chr2L_12415001 RAL-595 153 chr2L 12434013 12434040 chr2L 12434087 12434115 4 72 2.0 2.0 2.0 1.3 102 chr2L 12434013 5` UTR SC35 - chr2L 12434064 intergenic SC35 -,Elf + chr2L 12434115 intergenic SC35 -,Elf + chr2L_4_12430001 chr2L_12430001 RAL-595 154 chr2L 12487899 12487911 chr2L 12487980 12487992 5 80 2.5 5.5 4.0 1.0 93 chr2L 12487899 intron bun - chr2L 12487946 intron bun - chr2L 12487992 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-595 155 chr2L 12558326 12558348 chr2L 12565455 12565477 HMS-Beagle 5 7128 0.5 0.0 0.2 4.2 7151 chr2L 12558326 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565477 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-595 156 chr2L 12647224 12647240 chr2L 12647312 12647318 7 85 0.0 0.5 0.2 5.8 94 chr2L 12647224 intergenic not near genes chr2L 12647271 intergenic not near genes chr2L 12647318 intergenic not near genes chr2L_7_12645001 chr2L_12645001 RAL-595 157 chr2L 12693838 12693872 chr2L 12693915 12693949 9 77 1.0 0.0 0.5 6.0 111 chr2L 12693838 exon CG6153 + chr2L 12693894 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693949 3` UTR CG5780 - chr2L_9_12690001 chr2L_12690001 RAL-595 158 chr2L 12781805 12781814 chr2L 12789248 12789257 Quasimodo 4 7443 3.5 6.5 5.0 0.7 7452 chr2L 12781805 intergenic not near genes chr2L 12785531 intergenic not near genes chr2L 12789257 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-595 159 chr2L 12861696 12861731 chr2L 12863163 12863198 hobo 11 1465 2.5 4.5 3.5 2.4 1502 chr2L 12861696 intergenic not near genes chr2L 12862447 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_11_12860001 chr2L_12860001 RAL-595 160 chr2L 12894036 12894048 chr2L 12895482 12895515 hobo 4 1453 9.5 4.5 7.0 0.5 1479 chr2L 12894036 intergenic not near genes chr2L 12894776 intergenic not near genes chr2L 12895515 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-595 161 chr2L 12933852 12933867 chr2L 12941319 12941334 blood 4 7467 3.0 2.5 2.8 1.1 7482 chr2L 12933852 intergenic not near genes chr2L 12937593 intergenic not near genes chr2L 12941334 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-595 162 chr2L 13036245 13036255 chr2L 13036487 13036497 X-element 6 242 4.0 0.0 2.0 2.0 252 chr2L 13036245 intron CG9932 - chr2L 13036371 intron CG9932 - chr2L 13036497 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-595 163 chr2L 13147746 13147766 chr2L 13147822 13147840 4 73 2.5 1.5 2.0 1.3 94 chr2L 13147746 intergenic not near genes chr2L 13147793 intergenic not near genes chr2L 13147840 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-595 164 chr2L 13405648 13405671 chr2L 13410445 13410468 Doc 5 4797 4.5 2.5 3.5 1.1 4820 chr2L 13405648 exon CG7110 + chr2L 13408058 intron CG7110 + chr2L 13410468 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-595 165 chr2L 13422487 13422504 chr2L 13422566 13422583 4 79 0.0 2.0 1.0 2.0 96 chr2L 13422487 intron CG42784 + chr2L 13422535 intron CG42784 + chr2L 13422583 intron CG42784 + chr2L_4_13420001 chr2L_13420001 RAL-595 166 chr2L 13432988 13433013 chr2L 13433089 13433114 4 100 1.0 1.5 1.2 1.8 126 chr2L 13432988 intron CG42784 + chr2L 13433051 intron CG42784 + chr2L 13433114 intron CG42784 + chr2L_4_13430001 chr2L_13430001 RAL-595 167 chr2L 13481455 13481475 chr2L 13482059 13482074 jockey 7 605 3.0 7.5 5.2 1.1 619 chr2L 13481455 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482074 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-595 168 chr2L 13510262 13510278 chr2L 13510357 13510378 5 93 1.0 2.0 1.5 2.0 116 chr2L 13510262 intron B4 - chr2L 13510320 intron B4 - chr2L 13510378 intron B4 - chr2L_5_13510001 chr2L_13510001 RAL-595 169 chr2L 13622207 13622222 chr2L 13622307 13622325 10 102 3.0 0.5 1.8 3.6 118 chr2L 13622207 intron kuz + chr2L 13622266 intron kuz + chr2L 13622325 intron kuz + chr2L_10_13620001 chr2L_13620001 RAL-595 170 chr2L 13693489 13693513 chr2L 13693594 13693615 7 104 2.0 4.0 3.0 1.8 126 chr2L 13693489 intron CG31814 - chr2L 13693552 intron CG31814 - chr2L 13693615 intron CG31814 - chr2L_7_13690001 chr2L_13690001 RAL-595 171 chr2L 13761804 13761829 chr2L 13762915 13762939 Doc 5 1111 4.0 2.0 3.0 1.2 1135 chr2L 13761804 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762939 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-595 172 chr2L 13800175 13800204 chr2L 13800279 13800308 6 104 1.5 1.0 1.2 2.7 133 chr2L 13800175 intergenic not near genes chr2L 13800242 intergenic not near genes chr2L 13800308 intergenic not near genes chr2L_6_13800001 chr2L_13800001 RAL-595 173 chr2L 13853092 13853115 chr2L 13862242 13862265 roo 9 9149 2.0 0.5 1.2 4.1 9173 chr2L 13853092 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-595 174 chr2L 14149721 14149745 chr2L 14149798 14149821 4 77 0.5 0.5 0.5 2.7 100 chr2L 14149721 intron CG17341 + chr2L 14149771 intron CG17341 + chr2L 14149821 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-595 175 chr2L 14238729 14238750 chr2L 14238884 14238905 5 154 0.0 1.0 0.5 3.3 176 chr2L 14238729 intergenic not near genes chr2L 14238817 intergenic not near genes chr2L 14238905 intergenic not near genes chr2L_5_14235001 chr2L_14235001 RAL-595 176 chr2L 14305935 14305944 chr2L 14306020 14306029 4 85 1.0 4.0 2.5 1.1 94 chr2L 14305935 intron wb + chr2L 14305982 intron wb + chr2L 14306029 intron wb + chr2L_4_14305001 chr2L_14305001 RAL-595 177 chr2L 14427525 14427544 chr2L 14427616 14427634 5 91 1.5 5.0 3.2 1.2 109 chr2L 14427525 intergenic not near genes chr2L 14427580 intergenic not near genes chr2L 14427634 intergenic not near genes chr2L_5_14425001 chr2L_14425001 RAL-595 178 chr2L 14558458 14558490 chr2L 14558536 14558569 5 79 3.5 2.5 3.0 1.2 111 chr2L 14558458 intron CR44854 - chr2L 14558514 intron CR44854 - chr2L 14558569 intron CR44854 - chr2L_5_14555001 chr2L_14555001 RAL-595 179 chr2L 14588399 14588416 chr2L 14588553 14588568 8 153 1.0 3.5 2.2 2.5 169 chr2L 14588399 intergenic CG42680 - chr2L 14588484 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-595 180 chr2L 14689326 14689339 chr2L 14689405 14689420 4 80 2.5 2.0 2.2 1.2 94 chr2L 14689326 5` UTR osp - chr2L 14689373 intergenic osp - chr2L 14689420 intergenic osp - chr2L_4_14685001 chr2L_14685001 RAL-595 181 chr2L 14707206 14707238 chr2L 14707325 14707347 7 117 2.0 0.5 1.2 3.2 141 chr2L 14707206 intergenic not near genes chr2L 14707276 intergenic not near genes chr2L 14707347 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-595 182 chr2L 14744868 14744892 chr2L 14745013 14745029 5 140 0.5 3.0 1.8 1.8 161 chr2L 14744868 3` UTR CG42587 - chr2L 14744948 3` UTR CG42587 - chr2L 14745029 exon CG42587 - chr2L_5_14740001 chr2L_14740001 RAL-595 183 chr2L 14772464 14772499 chr2L 14772540 14772574 15 73 1.5 5.0 3.2 3.6 110 chr2L 14772464 intergenic not near genes chr2L 14772519 intergenic not near genes chr2L 14772574 intergenic not near genes chr2L_15_14770001 chr2L_14770001 RAL-595 184 chr2L 14803880 14803912 chr2L 14809083 14809115 copia 8 5203 1.0 4.0 2.5 2.3 5235 chr2L 14803880 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-595 185 chr2L 14854966 14854982 chr2L 14855044 14855060 5 78 2.5 5.5 4.0 1.0 94 chr2L 14854966 intergenic not near genes chr2L 14855013 intergenic not near genes chr2L 14855060 intergenic not near genes chr2L_5_14855001 chr2L_14855001 RAL-595 186 chr2L 14889951 14889987 chr2L 14890376 14890412 jockey 7 425 2.0 1.5 1.8 2.5 461 chr2L 14889951 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-595 187 chr2L 15170627 15170656 chr2L 15170720 15170749 6 93 2.5 0.0 1.2 2.7 122 chr2L 15170627 intron CG4168 - chr2L 15170688 intron CG4168 - chr2L 15170749 intron CG4168 - chr2L_6_15170001 chr2L_15170001 RAL-595 188 chr2L 15446049 15446075 chr2L 15453518 15453544 blood 4 7467 0.0 1.5 0.8 2.2 7495 chr2L 15446049 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453544 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-595 189 chr2L 15483291 15483313 chr2L 15483377 15483399 6 86 1.0 0.5 0.8 3.3 108 chr2L 15483291 intergenic not near genes chr2L 15483345 intergenic not near genes chr2L 15483399 intergenic not near genes chr2L_6_15480001 chr2L_15480001 RAL-595 190 chr2L 15610672 15610700 chr2L 15613564 15613593 5 2892 15.5 3.0 9.2 0.5 2921 chr2L 15610672 3` UTR,5` UTR CG15255 -,CR44865 + chr2L 15612132 intergenic CG11864 -,CG15255 - chr2L 15613593 intergenic CG11864 -,CG15254 - chr2L_5_15610001 chr2L_15610001 RAL-595 191 chr2L 15819319 15819342 chr2L 15819391 15819418 5 73 0.5 0.5 0.5 3.3 99 chr2L 15819319 intergenic not near genes chr2L 15819368 intergenic not near genes chr2L 15819418 intergenic not near genes chr2L_5_15815001 chr2L_15815001 RAL-595 192 chr2L 15906208 15906211 chr2L 15906283 15906300 4 81 2.0 2.5 2.2 1.2 92 chr2L 15906208 intron beat-Ib - chr2L 15906254 intron beat-Ib - chr2L 15906300 intron beat-Ib - chr2L_4_15905001 chr2L_15905001 RAL-595 193 chr2L 15907336 15907362 chr2L 15907691 15907717 8 352 1.0 0.0 0.5 5.3 381 chr2L 15907336 intron beat-Ib - chr2L 15907526 intron beat-Ib - chr2L 15907717 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-595 194 chr2L 15917190 15917205 chr2L 15917260 15917282 8 75 4.5 2.5 3.5 1.8 92 chr2L 15917190 intron,exon beat-Ib -,CG13244 + chr2L 15917236 intron,exon beat-Ib -,CG13244 + chr2L 15917282 intron,exon beat-Ib -,CG13244 + chr2L_8_15915001 chr2L_15915001 RAL-595 195 chr2L 15956034 15956048 chr2L 15957499 15957515 hobo 4 1466 1.0 0.5 0.8 2.2 1481 chr2L 15956034 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957515 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-595 196 chr2L 15998523 15998531 chr2L 15998744 15998771 5 236 1.5 3.0 2.2 1.6 248 chr2L 15998523 intergenic not near genes chr2L 15998647 intergenic not near genes chr2L 15998771 intergenic not near genes chr2L_5_15995001 chr2L_15995001 RAL-595 197 chr2L 16098924 16098954 chr2L 16099012 16099041 4 86 2.0 2.0 2.0 1.3 117 chr2L 16098924 intergenic not near genes chr2L 16098982 intergenic not near genes chr2L 16099041 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-595 198 chr2L 9084339 9084339 chr2L 16217660 16217660 4 7133321 9.0 10.5 9.8 0.4 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-595 199 chr2L 16280261 16280283 chr2L 16281426 16281443 1360 4 1164 2.5 7.5 5.0 0.7 1182 chr2L 16280261 intron crp - chr2L 16280852 intron crp - chr2L 16281443 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-595 200 chr2L 16387392 16387431 chr2L 16387474 16387506 9 80 1.5 1.0 1.2 4.1 114 chr2L 16387392 intergenic not near genes chr2L 16387449 intergenic not near genes chr2L 16387506 intergenic not near genes chr2L_9_16385001 chr2L_16385001 RAL-595 201 chr2L 16694143 16694164 chr2L 16694219 16694249 10 80 2.5 5.0 3.8 2.1 106 chr2L 16694143 intron grp + chr2L 16694196 intron grp + chr2L 16694249 intron grp + chr2L_10_16690001 chr2L_16690001 RAL-595 202 chr2L 16927567 16927573 chr2L 16928200 16928213 6 645 1.5 0.5 1.0 3.0 646 chr2L 16927567 intergenic not near genes chr2L 16927890 intergenic not near genes chr2L 16928213 intergenic not near genes chr2L_6_16925001 chr2L_16925001 RAL-595 203 chr2L 16939993 16940014 chr2L 16940071 16940092 6 77 1.5 1.5 1.5 2.4 99 chr2L 16939993 intergenic not near genes chr2L 16940042 intergenic not near genes chr2L 16940092 intergenic not near genes chr2L_6_16940001 chr2L_16940001 RAL-595 204 chr2L 17101906 17101914 chr2L 17101982 17101991 5 76 2.5 0.0 1.2 2.3 85 chr2L 17101906 intergenic not near genes chr2L 17101948 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-595 205 chr2L 17158729 17158764 chr2L 17158831 17158866 6 101 3.0 0.5 1.8 2.1 137 chr2L 17158729 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158798 intron,intron CG34106 +,beat-IIIa + chr2L 17158866 intron,intron CG34106 +,beat-IIIa + chr2L_6_17155001 chr2L_17155001 RAL-595 206 chr2L 17187451 17187474 chr2L 17187622 17187645 4 170 0.5 1.5 1.0 2.0 194 chr2L 17187451 intergenic beat-IIIc - chr2L 17187548 intergenic beat-IIIc - chr2L 17187645 3` UTR beat-IIIc - chr2L_4_17185001 chr2L_17185001 RAL-595 207 chr2L 17239197 17239211 chr2L 17239281 17239294 4 84 1.5 2.0 1.8 1.4 97 chr2L 17239197 intron beat-IIIc - chr2L 17239246 intron beat-IIIc - chr2L 17239294 intron beat-IIIc - chr2L_4_17235001 chr2L_17235001 RAL-595 208 chr2L 17273194 17273219 chr2L 17277974 17278000 F-element 6 4782 4.0 4.0 4.0 1.2 4806 chr2L 17273194 intergenic not near genes chr2L 17275597 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-595 209 chr2L 17289235 17289250 chr2L 17289314 17289329 4 78 3.5 0.0 1.8 1.4 94 chr2L 17289235 intergenic not near genes chr2L 17289282 intergenic not near genes chr2L 17289329 intergenic not near genes chr2L_4_17285001 chr2L_17285001 RAL-595 210 chr2L 17327909 17327929 chr2L 17327993 17328015 9 85 2.5 2.5 2.5 2.6 106 chr2L 17327909 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_9_17325001 chr2L_17325001 RAL-595 211 chr2L 17329075 17329098 chr2L 17329202 17329226 4 128 1.0 1.0 1.0 2.0 151 chr2L 17329075 intergenic not near genes chr2L 17329150 intergenic not near genes chr2L 17329226 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-595 212 chr2L 17349011 17349036 chr2L 17349103 17349120 6 90 1.0 3.0 2.0 2.0 109 chr2L 17349011 intergenic not near genes chr2L 17349066 intergenic not near genes chr2L 17349120 intergenic not near genes chr2L_6_17345001 chr2L_17345001 RAL-595 213 chr2L 17703654 17703678 chr2L 17703736 17703769 4 86 3.5 1.5 2.5 1.1 115 chr2L 17703654 intron CadN - chr2L 17703712 intron CadN - chr2L 17703769 intron CadN - chr2L_4_17700001 chr2L_17700001 RAL-595 214 chr2L 17723789 17723795 chr2L 17723881 17723888 4 92 0.0 0.5 0.2 3.3 99 chr2L 17723789 intron CadN - chr2L 17723838 intron CadN - chr2L 17723888 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-595 215 chr2L 17741962 17741987 chr2L 17742038 17742063 7 76 1.5 2.0 1.8 2.5 101 chr2L 17741962 intron CadN - chr2L 17742012 intron CadN - chr2L 17742063 intron CadN - chr2L_7_17740001 chr2L_17740001 RAL-595 216 chr2L 17747998 17748028 chr2L 17748074 17748105 8 76 4.5 2.0 3.2 1.9 107 chr2L 17747998 intron CadN - chr2L 17748052 intron CadN - chr2L 17748105 intron CadN - chr2L_8_17745001 chr2L_17745001 RAL-595 217 chr2L 17837155 17837183 chr2L 17837255 17837281 5 97 0.5 2.5 1.5 2.0 126 chr2L 17837155 intron CadN2 - chr2L 17837218 intron CadN2 - chr2L 17837281 intron CadN2 - chr2L_5_17835001 chr2L_17835001 RAL-595 218 chr2L 17855054 17855075 chr2L 17855303 17855324 9 249 3.0 1.5 2.2 2.8 270 chr2L 17855054 intron CadN2 - chr2L 17855189 intron CadN2 - chr2L 17855324 intron CadN2 - chr2L_9_17855001 chr2L_17855001 RAL-595 219 chr2L 17944416 17944448 chr2L 17944579 17944611 9 163 1.5 2.0 1.8 3.2 195 chr2L 17944416 intergenic not near genes chr2L 17944514 intergenic not near genes chr2L 17944611 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-595 220 chr2L 18090673 18090705 chr2L 18090761 18090793 11 88 1.0 0.0 0.5 7.3 120 chr2L 18090673 intergenic CG15153 - chr2L 18090733 intergenic CG15153 - chr2L 18090793 3` UTR CG15153 - chr2L_11_18090001 chr2L_18090001 RAL-595 221 chr2L 18107936 18107946 chr2L 18108161 18108171 5 225 1.5 2.5 2.0 1.7 235 chr2L 18107936 intergenic not near genes chr2L 18108054 intergenic not near genes chr2L 18108171 intergenic not near genes chr2L_5_18105001 chr2L_18105001 RAL-595 222 chr2L 18111252 18111264 chr2L 18111338 18111355 6 90 2.0 1.0 1.5 2.4 103 chr2L 18111252 intergenic not near genes chr2L 18111304 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-595 223 chr2L 18235035 18235067 chr2L 18235228 18235259 8 187 3.5 4.5 4.0 1.6 224 chr2L 18235035 intron CG42750 - chr2L 18235147 intron CG42750 - chr2L 18235259 intron CG42750 - chr2L_8_18235001 chr2L_18235001 RAL-595 224 chr2L 18264062 18264088 chr2L 18264139 18264165 4 77 1.5 0.5 1.0 2.0 103 chr2L 18264062 intron CG42750 - chr2L 18264114 intron CG42750 - chr2L 18264165 intron CG42750 - chr2L_4_18260001 chr2L_18260001 RAL-595 225 chr2L 18440060 18440351 chr2L 18440334 18440452 8 147 0.0 0.0 0.0 8.0 392 chr2L 18440060 intergenic not near genes chr2L 18440256 intergenic not near genes chr2L 18440452 intergenic not near genes chr2L_8_18440001 chr2L_18440001 RAL-595 226 chr2L 18800137 18800147 chr2L 18800221 18800237 5 88 3.5 5.0 4.2 1.0 100 chr2L 18800137 intergenic not near genes chr2L 18800187 intergenic not near genes chr2L 18800237 intergenic not near genes chr2L_5_18800001 chr2L_18800001 RAL-595 227 chr2L 18816749 18816772 chr2L 18816869 18816902 9 129 1.5 3.0 2.2 2.8 153 chr2L 18816749 intergenic not near genes chr2L 18816826 intergenic not near genes chr2L 18816902 intergenic not near genes chr2L_9_18815001 chr2L_18815001 RAL-595 228 chr2L 18876864 18876879 chr2L 18876941 18876957 6 77 0.5 1.5 1.0 3.0 93 chr2L 18876864 intron tup - chr2L 18876910 intron tup - chr2L 18876957 intron tup - chr2L_6_18875001 chr2L_18875001 RAL-595 229 chr2L 18901488 18901519 chr2L 18901565 18901599 5 79 7.0 2.5 4.8 0.9 111 chr2L 18901488 intergenic not near genes chr2L 18901544 intergenic not near genes chr2L 18901599 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-595 230 chr2L 19147368 19147400 chr2L 19154403 19154435 297 6 7035 0.5 0.5 0.5 4.0 7067 chr2L 19147368 intron brat + chr2L 19150902 intron brat + chr2L 19154435 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-595 231 chr2L 19237302 19237337 chr2L 19237402 19237436 7 99 1.0 1.5 1.2 3.2 134 chr2L 19237302 intergenic not near genes chr2L 19237369 intergenic not near genes chr2L 19237436 intergenic not near genes chr2L_7_19235001 chr2L_19235001 RAL-595 232 chr2L 19345016 19345050 chr2L 19357224 19357257 blood 5 12208 0.5 2.0 1.2 2.3 12241 chr2L 19345016 intron dnt - chr2L 19351136 intron dnt - chr2L 19357257 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-595 233 chr2L 19357555 19357562 chr2L 19357638 19357652 4 88 3.0 1.0 2.0 1.3 97 chr2L 19357555 intron dnt - chr2L 19357604 intron dnt - chr2L 19357652 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-595 234 chr2L 19407721 19407735 chr2L 19407918 19407931 5 196 3.5 5.0 4.2 1.0 210 chr2L 19407721 intron Pax - chr2L 19407826 intron Pax - chr2L 19407931 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-595 235 chr2L 19441069 19441083 chr2L 19441146 19441160 5 76 4.5 3.0 3.8 1.0 91 chr2L 19441069 intron CG10237 - chr2L 19441114 intron CG10237 - chr2L 19441160 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-595 236 chr2L 19544592 19544625 chr2L 19544666 19544695 11 73 5.5 1.5 3.5 2.4 103 chr2L 19544592 exon ref(2)P + chr2L 19544644 exon ref(2)P + chr2L 19544695 exon ref(2)P + chr2L_11_19540001 chr2L_19540001 RAL-595 237 chr2L 19620100 19620125 chr2L 19621086 19621088 jockey 6 982 5.0 5.0 5.0 1.0 988 chr2L 19620100 intron Lar + chr2L 19620594 intron Lar + chr2L 19621088 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-595 238 chr2L 19689065 19689090 chr2L 19689164 19689194 11 103 1.0 0.5 0.8 6.1 129 chr2L 19689065 intron Lar + chr2L 19689130 intron Lar + chr2L 19689194 intron Lar + chr2L_11_19685001 chr2L_19685001 RAL-595 239 chr2L 19697139 19697158 chr2L 19697231 19697251 8 92 2.5 2.0 2.2 2.5 112 chr2L 19697139 intron Lar + chr2L 19697195 intron Lar + chr2L 19697251 intron Lar + chr2L_8_19695001 chr2L_19695001 RAL-595 240 chr2L 19703536 19703560 chr2L 19712672 19712696 roo 9 9136 2.5 2.0 2.2 2.8 9160 chr2L 19703536 intron Lar + chr2L 19708116 intron Lar + chr2L 19712696 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-595 241 chr2L 19712686 19712721 chr2L 19712770 19712805 6 80 2.5 4.5 3.5 1.3 119 chr2L 19712686 intron Lar + chr2L 19712746 intron Lar + chr2L 19712805 intron Lar + chr2L_6_19710001 chr2L_19710001 RAL-595 242 chr2L 19737352 19737381 chr2L 19740821 19740850 1360 15 3463 2.5 3.0 2.8 3.9 3498 chr2L 19737352 intergenic Nf-YB + chr2L 19739101 intergenic not near genes chr2L 19740850 intergenic not near genes chr2L_15_19735001 chr2L_19735001 RAL-595 243 chr2L 19837276 19837306 chr2L 19837356 19837383 8 79 3.0 3.0 3.0 2.0 107 chr2L 19837276 intron sick + chr2L 19837330 intron sick + chr2L 19837383 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-595 244 chr2L 19846254 19846272 chr2L 19846335 19846353 7 81 0.5 1.5 1.0 3.5 99 chr2L 19846254 intron sick + chr2L 19846304 intron sick + chr2L 19846353 intron sick + chr2L_7_19845001 chr2L_19845001 RAL-595 245 chr2L 19911293 19911318 chr2L 19911381 19911404 8 85 1.5 1.5 1.5 3.2 111 chr2L 19911293 intron,3` UTR sick +,CR43097 - chr2L 19911348 intron,3` UTR sick +,CR43097 - chr2L 19911404 intron,3` UTR sick +,CR43097 - chr2L_8_19910001 chr2L_19910001 RAL-595 246 chr2L 19964832 19964869 chr2L 19964916 19964952 8 85 3.0 2.0 2.5 2.3 120 chr2L 19964832 intron CG10680 + chr2L 19964892 exon CG10680 + chr2L 19964952 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-595 247 chr2L 20041429 20041460 chr2L 20041514 20041528 11 82 4.5 1.5 3.0 2.8 99 chr2L 20041429 intron sNPF + chr2L 20041478 intron sNPF + chr2L 20041528 intron sNPF + chr2L_11_20040001 chr2L_20040001 RAL-595 248 chr2L 20250925 20250954 chr2L 20251003 20251031 4 74 2.5 4.0 3.2 1.0 106 chr2L 20250925 intergenic not near genes chr2L 20250978 intergenic not near genes chr2L 20251031 intergenic not near genes chr2L_4_20250001 chr2L_20250001 RAL-595 249 chr2L 20269703 20269708 chr2L 20269786 20269789 4 83 2.0 3.5 2.8 1.1 86 chr2L 20269703 intergenic not near genes chr2L 20269746 intergenic not near genes chr2L 20269789 intergenic not near genes chr2L_4_20265001 chr2L_20265001 RAL-595 250 chr2L 20298834 20298852 chr2L 20298913 20298934 4 80 0.5 2.5 1.5 1.6 100 chr2L 20298834 intergenic not near genes chr2L 20298884 intergenic not near genes chr2L 20298934 intergenic not near genes chr2L_4_20295001 chr2L_20295001 RAL-595 251 chr2L 20300011 20300019 chr2L 20300096 20300106 5 86 7.0 5.0 6.0 0.7 95 chr2L 20300011 intergenic not near genes chr2L 20300058 intergenic not near genes chr2L 20300106 intergenic not near genes chr2L_5_20300001 chr2L_20300001 RAL-595 252 chr2L 20549131 20549155 chr2L 20549213 20549237 5 82 1.5 1.5 1.5 2.0 106 chr2L 20549131 intergenic not near genes chr2L 20549184 intergenic not near genes chr2L 20549237 intergenic not near genes chr2L_5_20545001 chr2L_20545001 RAL-595 253 chr2L 20553184 20553218 chr2L 20553260 20553294 7 75 2.0 0.0 1.0 3.5 110 chr2L 20553184 intergenic not near genes chr2L 20553239 intergenic not near genes chr2L 20553294 intergenic not near genes chr2L_7_20550001 chr2L_20550001 RAL-595 254 chr2L 20576223 20576249 chr2L 20583690 20583691 blood 9 7464 0.5 1.5 1.0 4.5 7468 chr2L 20576223 intergenic not near genes chr2L 20579957 intergenic not near genes chr2L 20583691 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-595 255 chr2L 20617373 20617389 chr2L 20618380 20618397 5 1004 3.0 1.0 2.0 1.7 1024 chr2L 20617373 intron CR44909 - chr2L 20617885 intron CR44909 - chr2L 20618397 intron,3` UTR CR44909 -,mir-288 - chr2L_5_20615001 chr2L_20615001 RAL-595 256 chr2L 20672177 20672197 chr2L 20672259 20672278 8 81 2.5 0.5 1.5 3.2 101 chr2L 20672177 intron CG31678 - chr2L 20672228 intron CG31678 - chr2L 20672278 intron CG31678 - chr2L_8_20670001 chr2L_20670001 RAL-595 257 chr2L 20690634 20690648 chr2L 20691012 20691022 4 378 0.5 3.5 2.0 1.3 388 chr2L 20690634 intron Hr38 - chr2L 20690828 intron Hr38 - chr2L 20691022 intron Hr38 - chr2L_4_20690001 chr2L_20690001 RAL-595 258 chr2L 20695798 20695823 chr2L 20695885 20695911 5 88 1.0 1.5 1.2 2.3 113 chr2L 20695798 intron Hr38 - chr2L 20695854 intron Hr38 - chr2L 20695911 intron Hr38 - chr2L_5_20695001 chr2L_20695001 RAL-595 259 chr2L 20708777 20708805 chr2L 20708962 20708990 11 185 2.0 1.5 1.8 3.9 213 chr2L 20708777 intron Hr38 - chr2L 20708884 intron Hr38 - chr2L 20708990 intron Hr38 - chr2L_11_20705001 chr2L_20705001 RAL-595 260 chr2L 20911027 20911054 chr2L 20911103 20911129 11 75 6.5 2.0 4.2 2.1 102 chr2L 20911027 intron,intron CG43739 -,sky - chr2L 20911078 intron,intron CG43739 -,sky - chr2L 20911129 intron,intron CG43739 -,sky - chr2L_11_20910001 chr2L_20910001 RAL-595 261 chr2L 20961205 20961234 chr2L 20961294 20961324 6 90 1.5 3.5 2.5 1.7 119 chr2L 20961205 intergenic not near genes chr2L 20961264 intergenic not near genes chr2L 20961324 intergenic not near genes chr2L_6_20960001 chr2L_20960001 RAL-595 262 chr2L 20976652 20976674 chr2L 20981467 20981489 X-element 4 4815 0.5 2.0 1.2 1.8 4837 chr2L 20976652 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981489 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-595 263 chr2L 21020277 21020309 chr2L 21023953 21023986 NOF 7 3675 0.5 7.0 3.8 1.5 3709 chr2L 21020277 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-595 264 chr2L 21041137 21041168 chr2L 21049397 21049410 Tirant 10 8256 3.5 3.5 3.5 2.2 8273 chr2L 21041137 intron CG42238 - chr2L 21045274 intron CG42238 - chr2L 21049410 intron CG42238 - chr2L_10_21045001 chr2L_21045001 RAL-595 265 chr2L 21113685 21113718 chr2L 21113776 21113811 8 92 2.5 3.5 3.0 2.0 126 chr2L 21113685 intron Nhe2 + chr2L 21113748 intron Nhe2 + chr2L 21113811 intron Nhe2 + chr2L_8_21110001 chr2L_21110001 RAL-595 266 chr2L 21124534 21124541 chr2L 21124620 21124627 4 86 4.5 0.0 2.2 1.2 93 chr2L 21124534 intron Nhe2 + chr2L 21124580 intron Nhe2 + chr2L 21124627 intron Nhe2 + chr2L_4_21120001 chr2L_21120001 RAL-595 267 chr2L 21196182 21196194 chr2L 21196308 21196320 4 125 0.5 3.0 1.8 1.4 138 chr2L 21196182 intron Ret - chr2L 21196251 intron Ret - chr2L 21196320 intron Ret - chr2L_4_21195001 chr2L_21195001 RAL-595 268 chr2L 21284055 21284084 chr2L 21284528 21284530 8 466 4.0 3.5 3.8 1.7 475 chr2L 21284055 intergenic not near genes chr2L 21284292 intergenic not near genes chr2L 21284530 intergenic not near genes chr2L_8_21280001 chr2L_21280001 RAL-595 269 chr2L 21285634 21285667 chr2L 21285732 21285755 9 92 4.0 5.5 4.8 1.6 121 chr2L 21285634 intergenic Mio - chr2L 21285694 intergenic Mio - chr2L 21285755 intergenic Mio - chr2L_9_21285001 chr2L_21285001 RAL-595 270 chr2L 21307470 21307494 chr2L 21307552 21307574 4 81 2.5 0.5 1.5 1.6 104 chr2L 21307470 intron Mio - chr2L 21307522 intron Mio - chr2L 21307574 intron Mio - chr2L_4_21305001 chr2L_21305001 RAL-595 271 chr2L 21855475 21855511 chr2L 21855561 21855598 5 86 1.0 1.0 1.0 2.5 123 chr2L 21855475 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855598 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-595 272 chr2L 21859323 21859352 chr2L 21859403 21859408 8 71 2.0 2.0 2.0 2.7 85 chr2L 21859323 intron CR44917 + chr2L 21859366 intron CR44917 + chr2L 21859408 intron CR44917 + chr2L_8_21855001 chr2L_21855001 RAL-595 273 chr2L 21981683 21981716 chr2L 21990848 21990881 roo 11 9164 1.5 3.0 2.2 3.4 9198 chr2L 21981683 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-595 274 chr2L 22239427 22239449 chr2L 22239507 22239516 18 78 4.5 2.0 3.2 4.3 89 chr2L 22239427 3` UTR CR43765 - chr2L 22239472 3` UTR CR43765 - chr2L 22239516 3` UTR CR43765 - chr2L_18_22235001 chr2L_22235001 RAL-595 275 chr2L 22350268 22350295 chr2L 22350364 22350397 7 101 1.0 2.5 1.8 2.5 129 chr2L 22350268 intron CG17018 + chr2L 22350332 intron CG17018 + chr2L 22350397 intron CG17018 + chr2L_7_22350001 chr2L_22350001 RAL-595 276 chr2L 22545982 22546011 chr2L 22546078 22546107 14 90 4.5 2.5 3.5 3.1 125 chr2L 22545982 intron CG17490 + chr2L 22546044 intron CG17490 + chr2L 22546107 intron CG17490 + chr2L_14_22545001 chr2L_22545001 RAL-595 277 chr2L 22983945 22983971 chr2L 22984021 22984046 4 73 1.0 1.5 1.2 1.8 101 chr2L 22983945 intron cta + chr2L 22983996 intron cta + chr2L 22984046 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-595 278 chr2R 529341 529357 chr2R 537951 537982 Max-element 5 8622 1.0 1.0 1.0 2.5 8641 chr2R 529341 intron CG40378 + chr2R 533662 intron CG40378 + chr2R 537982 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-595 279 chr2R 1082372 1082385 chr2R 1087126 1087161 Doc 6 4768 3.0 1.0 2.0 2.0 4789 chr2R 1082372 intron rl + chr2R 1084766 intron rl + chr2R 1087161 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-595 280 chr2R 1569076 1569093 chr2R 1569165 1569182 6 89 4.5 1.5 3.0 1.5 106 chr2R 1569076 intergenic not near genes chr2R 1569129 intergenic not near genes chr2R 1569182 intergenic not near genes chr2R_6_1565001 chr2R_1565001 RAL-595 281 chr2R 2015137 2015162 chr2R 2015210 2015239 4 76 0.5 1.0 0.8 2.2 102 chr2R 2015137 intron CG17684 - chr2R 2015188 intron CG17684 - chr2R 2015239 intron CG17684 - chr2R_4_2015001 chr2R_2015001 RAL-595 282 chr2R 2498986 2499009 chr2R 2508129 2508156 roo 5 9146 1.5 1.5 1.5 2.0 9170 chr2R 2498986 intron MFS17 - chr2R 2503571 intron MFS17 - chr2R 2508156 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-595 283 chr2R 3399227 3399262 chr2R 3399313 3399346 9 86 0.5 2.5 1.5 3.6 119 chr2R 3399227 intergenic not near genes chr2R 3399286 intergenic not near genes chr2R 3399346 intergenic not near genes chr2R_9_3395001 chr2R_3395001 RAL-595 284 chr2R 3587235 3587251 chr2R 3587312 3587328 4 77 1.5 2.0 1.8 1.4 93 chr2R 3587235 intergenic not near genes chr2R 3587282 intergenic not near genes chr2R 3587328 intergenic not near genes chr2R_4_3585001 chr2R_3585001 RAL-595 285 chr2R 4622952 4622986 chr2R 4624110 4624144 1360 6 1158 1.0 2.0 1.5 2.4 1192 chr2R 4622952 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-595 286 chr2R 4838878 4838886 chr2R 4840402 4840409 transib2 4 1523 4.0 1.0 2.5 1.1 1531 chr2R 4838878 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840409 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-595 287 chr2R 4933357 4933390 chr2R 4933918 4933954 7 562 2.0 3.5 2.8 1.8 597 chr2R 4933357 intron Ir41a + chr2R 4933656 intron Ir41a + chr2R 4933954 intron Ir41a + chr2R_7_4930001 chr2R_4930001 RAL-595 288 chr2R 4938505 4938531 chr2R 4938632 4938667 6 134 2.5 1.0 1.8 2.1 162 chr2R 4938505 intron Ir41a + chr2R 4938586 intron Ir41a + chr2R 4938667 intron Ir41a + chr2R_6_4935001 chr2R_4935001 RAL-595 289 chr2R 4940959 4940973 chr2R 4943409 4943423 6 2448 2.0 1.5 1.8 2.1 2464 chr2R 4940959 intron Ir41a + chr2R 4942191 intron Ir41a + chr2R 4943423 intron Ir41a + chr2R_6_4940001 chr2R_4940001 RAL-595 290 chr2R 5103047 5103077 chr2R 5103128 5103156 12 81 3.5 1.0 2.2 3.8 109 chr2R 5103047 intergenic not near genes chr2R 5103102 intergenic not near genes chr2R 5103156 intergenic not near genes chr2R_12_5100001 chr2R_5100001 RAL-595 291 chr2R 5463138 5463148 chr2R 5463455 5463466 4 316 6.0 3.0 4.5 0.7 328 chr2R 5463138 intergenic not near genes chr2R 5463302 intergenic not near genes chr2R 5463466 intergenic not near genes chr2R_4_5460001 chr2R_5460001 RAL-595 292 chr2R 5472378 5472387 chr2R 5472481 5472490 7 102 4.0 2.0 3.0 1.8 112 chr2R 5472378 intron CG30440 - chr2R 5472434 intron CG30440 - chr2R 5472490 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-595 293 chr2R 5476353 5476382 chr2R 5476897 5476926 7 544 1.0 2.0 1.5 2.8 573 chr2R 5476353 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476926 intron CG30440 - chr2R_7_5475001 chr2R_5475001 RAL-595 294 chr2R 5581399 5581423 chr2R 5627608 5627632 5 46209 0.5 5.0 2.8 1.3 46233 chr2R 5581399 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627632 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-595 295 chr2R 5611812 5611830 chr2R 5611916 5611934 5 103 1.0 2.0 1.5 2.0 122 chr2R 5611812 intergenic CG17508 + chr2R 5611873 intergenic CG17508 + chr2R 5611934 intergenic CG17508 + chr2R_5_5610001 chr2R_5610001 RAL-595 296 chr2R 5710657 5710674 chr2R 5710734 5710737 5 71 1.0 1.5 1.2 2.3 80 chr2R 5710657 intron ap - chr2R 5710697 intron ap - chr2R 5710737 intron ap - chr2R_5_5710001 chr2R_5710001 RAL-595 297 chr2R 5710676 5710682 chr2R 5710732 5710757 8 65 0.5 1.0 0.8 4.4 81 chr2R 5710676 intron ap - chr2R 5710716 intron ap - chr2R 5710757 intron ap - chr2R_8_5710001 chr2R_5710001 RAL-595 298 chr2R 5741430 5741463 chr2R 5741518 5741551 9 87 2.0 1.0 1.5 3.6 121 chr2R 5741430 intergenic not near genes chr2R 5741490 intergenic not near genes chr2R 5741551 intergenic not near genes chr2R_9_5740001 chr2R_5740001 RAL-595 299 chr2R 5752554 5752589 chr2R 5753067 5753102 8 513 2.5 0.0 1.2 3.6 548 chr2R 5752554 intergenic not near genes chr2R 5752828 intergenic not near genes chr2R 5753102 intergenic not near genes chr2R_8_5750001 chr2R_5750001 RAL-595 300 chr2R 5838879 5838902 chr2R 5838965 5838988 16 84 2.5 6.0 4.2 3.1 109 chr2R 5838879 intron dpr12 + chr2R 5838934 intron dpr12 + chr2R 5838988 intron dpr12 + chr2R_16_5835001 chr2R_5835001 RAL-595 301 chr2R 5861288 5861318 chr2R 5861409 5861432 16 116 3.0 4.5 3.8 3.3 144 chr2R 5861288 intergenic dpr12 + chr2R 5861360 intergenic not near genes chr2R 5861432 intergenic not near genes chr2R_16_5860001 chr2R_5860001 RAL-595 302 chr2R 5869295 5869304 chr2R 5874350 5874380 flea 5 5068 0.0 2.5 1.2 2.3 5085 chr2R 5869295 intergenic not near genes chr2R 5871838 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-595 303 chr2R 5878923 5878956 chr2R 5879003 5879036 4 79 0.5 0.0 0.2 3.3 113 chr2R 5878923 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879036 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-595 304 chr2R 5914137 5914163 chr2R 5914425 5914433 5 286 1.0 0.5 0.8 2.8 296 chr2R 5914137 intron CG43366 + chr2R 5914285 intron CG43366 + chr2R 5914433 intron CG43366 + chr2R_5_5910001 chr2R_5910001 RAL-595 305 chr2R 6033446 6033474 chr2R 6033531 6033559 4 85 2.5 1.5 2.0 1.3 113 chr2R 6033446 intron SCAP - chr2R 6033502 intron SCAP - chr2R 6033559 intron SCAP - chr2R_4_6030001 chr2R_6030001 RAL-595 306 chr2R 6065748 6065774 chr2R 6065860 6065886 7 109 4.0 3.0 3.5 1.6 138 chr2R 6065748 intron CCHa2-R + chr2R 6065817 intron CCHa2-R + chr2R 6065886 exon CCHa2-R + chr2R_7_6065001 chr2R_6065001 RAL-595 307 chr2R 6096733 6096745 chr2R 6101915 6101943 BS 5 5191 2.0 3.5 2.8 1.3 5210 chr2R 6096733 intron EcR - chr2R 6099338 intron EcR - chr2R 6101943 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-595 308 chr2R 6129332 6129353 chr2R 6129410 6129431 4 76 0.0 2.0 1.0 2.0 99 chr2R 6129332 intron EcR - chr2R 6129382 intron EcR - chr2R 6129431 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-595 309 chr2R 6147364 6147364 chr2R 9578786 9578793 flea 4 3431426 13.0 13.5 13.2 0.3 3431429 chr2R 6147364 intron EcR - chr2R 7863078 intron Dgk - chr2R 9578793 5` UTR,intron Not1 -,CG1814 + chr2R_4_7860001 chr2R_7860001 RAL-595 310 chr2R 6168198 6168220 chr2R 6168280 6168302 4 82 4.0 2.0 3.0 1.0 104 chr2R 6168198 intron EcR - chr2R 6168250 intron EcR - chr2R 6168302 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-595 311 chr2R 7052042 7052070 chr2R 7052118 7052149 7 78 3.0 3.0 3.0 1.8 107 chr2R 7052042 intergenic lbm + chr2R 7052096 intergenic lbm + chr2R 7052149 intergenic lbm + chr2R_7_7050001 chr2R_7050001 RAL-595 312 chr2R 7064921 7064932 chr2R 7064995 7065008 5 75 1.0 0.5 0.8 2.8 87 chr2R 7064921 intron Tsp42Er + chr2R 7064964 intron Tsp42Er + chr2R 7065008 intron Tsp42Er + chr2R_5_7060001 chr2R_7060001 RAL-595 313 chr2R 7101615 7101647 chr2R 7101710 7101719 10 91 2.5 2.0 2.2 3.1 104 chr2R 7101615 intron esn + chr2R 7101667 intron esn + chr2R 7101719 intron esn + chr2R_10_7100001 chr2R_7100001 RAL-595 314 chr2R 7139945 7139955 chr2R 7141435 7141443 hopper2 5 1490 3.5 10.0 6.8 0.6 1498 chr2R 7139945 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141443 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-595 315 chr2R 7162325 7162357 chr2R 7162413 7162445 9 87 4.5 2.5 3.5 2.0 120 chr2R 7162325 intron pk + chr2R 7162385 intron pk + chr2R 7162445 intron pk + chr2R_9_7160001 chr2R_7160001 RAL-595 316 chr2R 7235822 7235833 chr2R 7240914 7240925 jockey 6 5092 6.5 3.0 4.8 1.0 5103 chr2R 7235822 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240925 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-595 317 chr2R 7235837 7235849 chr2R 7240908 7240941 jockey 8 5086 3.0 3.0 3.0 2.0 5104 chr2R 7235837 intergenic not near genes chr2R 7238389 intergenic not near genes chr2R 7240941 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-595 318 chr2R 7250723 7250752 chr2R 7250822 7250851 8 97 5.0 3.5 4.2 1.5 128 chr2R 7250723 intergenic Gadd45 + chr2R 7250787 intergenic Gadd45 + chr2R 7250851 intergenic Gadd45 + chr2R_8_7250001 chr2R_7250001 RAL-595 319 chr2R 7869191 7869222 chr2R 7873977 7873979 Doc 5 4780 1.0 2.0 1.5 2.0 4788 chr2R 7869191 intron Dgk - chr2R 7871585 intron Dgk - chr2R 7873979 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-595 320 chr2R 7942945 7942946 chr2R 7943202 7943203 4 257 1.5 0.0 0.8 2.2 258 chr2R 7942945 intron CG14764 - chr2R 7943074 intron CG14764 - chr2R 7943203 intron CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-595 321 chr2R 8036260 8036269 chr2R 8036340 8036351 7 81 2.5 3.0 2.8 1.8 91 chr2R 8036260 intron Optix + chr2R 8036306 intron Optix + chr2R 8036351 intron Optix + chr2R_7_8035001 chr2R_8035001 RAL-595 322 chr2R 8067066 8067088 chr2R 8067150 8067171 7 84 1.0 3.5 2.2 2.2 105 chr2R 8067066 intron CG17977 - chr2R 8067118 intron CG17977 - chr2R 8067171 exon CG17977 - chr2R_7_8065001 chr2R_8065001 RAL-595 323 chr2R 8076697 8076710 chr2R 8076777 8076790 4 80 1.0 0.5 0.8 2.2 93 chr2R 8076697 intron lig + chr2R 8076744 intron lig + chr2R 8076790 intron lig + chr2R_4_8075001 chr2R_8075001 RAL-595 324 chr2R 8089260 8089285 chr2R 8089346 8089371 7 86 2.5 1.0 1.8 2.5 111 chr2R 8089260 3` UTR sut2 + chr2R 8089316 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_7_8085001 chr2R_8085001 RAL-595 325 chr2R 8151605 8151628 chr2R 8151685 8151708 4 80 0.5 2.0 1.2 1.8 103 chr2R 8151605 intron,intron Lpin -,kermit - chr2R 8151656 intron,intron Lpin -,kermit - chr2R 8151708 intron,intron Lpin -,kermit - chr2R_4_8150001 chr2R_8150001 RAL-595 326 chr2R 8329448 8329476 chr2R 8329532 8329557 12 83 1.5 2.5 2.0 4.0 109 chr2R 8329448 intron pdm3 + chr2R 8329502 intron pdm3 + chr2R 8329557 intron pdm3 + chr2R_12_8325001 chr2R_8325001 RAL-595 327 chr2R 8330871 8330892 chr2R 8331354 8331355 roo 6 480 2.0 0.5 1.2 2.7 484 chr2R 8330871 intron pdm3 + chr2R 8331113 intron pdm3 + chr2R 8331355 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-595 328 chr2R 8398213 8398243 chr2R 8402993 8403024 Doc 6 4780 4.0 2.0 3.0 1.5 4811 chr2R 8398213 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-595 329 chr2R 8483964 8483989 chr2R 8484039 8484041 6 69 0.0 1.0 0.5 4.0 77 chr2R 8483964 intron mtt - chr2R 8484002 intron mtt - chr2R 8484041 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-595 330 chr2R 8565384 8565406 chr2R 8565462 8565478 5 77 2.0 3.5 2.8 1.3 94 chr2R 8565384 exon Cyp6a14 - chr2R 8565431 exon Cyp6a14 - chr2R 8565478 exon Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-595 331 chr2R 8566039 8566062 chr2R 8566991 8567014 1360 5 950 4.5 4.5 4.5 0.9 975 chr2R 8566039 5` UTR Cyp6a14 - chr2R 8566526 5` UTR Cyp6a14 - chr2R 8567014 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-595 332 chr2R 8722763 8722795 chr2R 8723004 8723009 pogo 6 230 2.5 5.0 3.8 1.2 246 chr2R 8722763 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723009 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-595 333 chr2R 9031980 9032013 chr2R 9032058 9032090 12 77 0.5 2.0 1.2 5.5 110 chr2R 9031980 intergenic not near genes chr2R 9032035 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_12_9030001 chr2R_9030001 RAL-595 334 chr2R 9052709 9052736 chr2R 9052789 9052817 12 79 0.5 3.0 1.8 4.3 108 chr2R 9052709 intron CG13743 - chr2R 9052763 intron CG13743 - chr2R 9052817 intron CG13743 - chr2R_12_9050001 chr2R_9050001 RAL-595 335 chr2R 9055443 9055459 chr2R 9055571 9055587 7 128 3.0 6.5 4.8 1.2 144 chr2R 9055443 intron CG13743 - chr2R 9055515 intron CG13743 - chr2R 9055587 intron CG13743 - chr2R_7_9055001 chr2R_9055001 RAL-595 336 chr2R 9151305 9151331 chr2R 9157773 9157801 Burdock 5 6470 3.0 1.0 2.0 1.7 6496 chr2R 9151305 3` UTR CG30345 + chr2R 9154553 intergenic not near genes chr2R 9157801 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-595 337 chr2R 9212691 9212707 chr2R 9213177 9213180 roo 4 482 2.5 3.0 2.8 1.1 489 chr2R 9212691 intergenic CR45309 + chr2R 9212936 intergenic CR45309 + chr2R 9213180 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-595 338 chr2R 9378114 9378143 chr2R 9378196 9378223 6 81 2.5 4.0 3.2 1.4 109 chr2R 9378114 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378223 intron CG13954 - chr2R_6_9375001 chr2R_9375001 RAL-595 339 chr2R 9616636 9616645 chr2R 9616741 9616746 6 104 9.5 5.0 7.2 0.7 110 chr2R 9616636 intron Mmp2 - chr2R 9616691 intron Mmp2 - chr2R 9616746 intron Mmp2 - chr2R_6_9615001 chr2R_9615001 RAL-595 340 chr2R 9649715 9649744 chr2R 9649938 9649948 8 215 2.0 1.5 1.8 2.9 233 chr2R 9649715 intron Mmp2 - chr2R 9649832 intron Mmp2 - chr2R 9649948 intron Mmp2 - chr2R_8_9645001 chr2R_9645001 RAL-595 341 chr2R 9672331 9672347 chr2R 9672415 9672416 10 82 1.5 3.5 2.5 2.9 85 chr2R 9672331 intron Mmp2 - chr2R 9672374 intron Mmp2 - chr2R 9672416 intron Mmp2 - chr2R_10_9670001 chr2R_9670001 RAL-595 342 chr2R 9830292 9830297 chr2R 9830372 9830379 4 81 2.5 4.5 3.5 0.9 87 chr2R 9830292 intron hebe - chr2R 9830336 intron hebe - chr2R 9830379 intron hebe - chr2R_4_9830001 chr2R_9830001 RAL-595 343 chr2R 9928419 9928429 chr2R 9928543 9928554 7 124 4.0 1.0 2.5 2.0 135 chr2R 9928419 intron Mef2 - chr2R 9928486 intron Mef2 - chr2R 9928554 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-595 344 chr2R 9945446 9945469 chr2R 9945629 9945664 BS 8 192 3.0 0.5 1.8 2.9 218 chr2R 9945446 intron Mef2 - chr2R 9945555 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-595 345 chr2R 9966965 9966987 chr2R 9967065 9967088 5 97 1.5 1.0 1.2 2.3 123 chr2R 9966965 intergenic CG12133 + chr2R 9967026 intergenic CG12133 + chr2R 9967088 intergenic CG12133 + chr2R_5_9965001 chr2R_9965001 RAL-595 346 chr2R 9975928 9975946 chr2R 9976043 9976061 7 115 3.5 0.5 2.0 2.3 133 chr2R 9975928 intergenic not near genes chr2R 9975994 intergenic not near genes chr2R 9976061 intergenic not near genes chr2R_7_9975001 chr2R_9975001 RAL-595 347 chr2R 10017648 10017680 chr2R 10017727 10017759 8 79 0.0 3.0 1.5 3.2 111 chr2R 10017648 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017759 intron Pka-R2 - chr2R_8_10015001 chr2R_10015001 RAL-595 348 chr2R 10132201 10132219 chr2R 10132281 10132299 5 80 0.0 4.5 2.2 1.6 98 chr2R 10132201 intron gem + chr2R 10132250 intron gem + chr2R 10132299 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-595 349 chr2R 10176878 10176907 chr2R 10186048 10186077 roo 4 9170 0.5 0.0 0.2 3.3 9199 chr2R 10176878 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186077 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-595 350 chr2R 10318521 10318542 chr2R 10318607 10318628 8 86 3.0 4.0 3.5 1.8 107 chr2R 10318521 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318628 intron Ndg + chr2R_8_10315001 chr2R_10315001 RAL-595 351 chr2R 10352673 10352704 chr2R 10352750 10352781 11 76 3.5 1.5 2.5 3.1 108 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352727 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352781 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-595 352 chr2R 10469021 10469047 chr2R 10469146 10469173 5 125 1.5 4.5 3.0 1.2 152 chr2R 10469021 intron CG11777 + chr2R 10469097 intron CG11777 + chr2R 10469173 intron CG11777 + chr2R_5_10465001 chr2R_10465001 RAL-595 353 chr2R 10658060 10658087 chr2R 10658146 10658179 6 91 2.5 3.5 3.0 1.5 119 chr2R 10658060 intergenic not near genes chr2R 10658120 intergenic not near genes chr2R 10658179 intergenic not near genes chr2R_6_10655001 chr2R_10655001 RAL-595 354 chr2R 10761557 10761576 chr2R 10761711 10761726 7 153 2.0 2.5 2.2 2.2 169 chr2R 10761557 intron,5` UTR CG33144 -,CR43605 + chr2R 10761642 intron,5` UTR CG33144 -,CR43605 + chr2R 10761726 intron CG33144 - chr2R_7_10760001 chr2R_10760001 RAL-595 355 chr2R 10768152 10768171 chr2R 10768233 10768252 5 81 2.5 1.0 1.8 1.8 100 chr2R 10768152 intron CG33144 - chr2R 10768202 intron CG33144 - chr2R 10768252 intron CG33144 - chr2R_5_10765001 chr2R_10765001 RAL-595 356 chr2R 10796718 10796737 chr2R 10796810 10796833 6 97 2.0 0.5 1.2 2.7 115 chr2R 10796718 intron CG33144 - chr2R 10796776 intron CG33144 - chr2R 10796833 intron CG33144 - chr2R_6_10795001 chr2R_10795001 RAL-595 357 chr2R 10827354 10827361 chr2R 10827432 10827449 5 83 5.5 3.5 4.5 0.9 95 chr2R 10827354 exon CG12325 + chr2R 10827402 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_5_10825001 chr2R_10825001 RAL-595 358 chr2R 10839496 10839515 chr2R 10839574 10839595 5 78 0.5 5.0 2.8 1.3 99 chr2R 10839496 3` UTR CG30015 - chr2R 10839546 3` UTR CG30015 - chr2R 10839595 3` UTR CG30015 - chr2R_5_10835001 chr2R_10835001 RAL-595 359 chr2R 10918562 10918568 chr2R 10918619 10918642 5 63 3.5 1.5 2.5 1.4 80 chr2R 10918562 intergenic not near genes chr2R 10918602 intergenic not near genes chr2R 10918642 intergenic not near genes chr2R_5_10915001 chr2R_10915001 RAL-595 360 chr2R 10948026 10948060 chr2R 10955576 10955604 17.6 7 7549 1.5 1.5 1.5 2.8 7578 chr2R 10948026 intergenic not near genes chr2R 10951815 intergenic not near genes chr2R 10955604 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-595 361 chr2R 11009815 11009848 chr2R 11018989 11019017 roo 13 9170 3.5 4.5 4.0 2.6 9202 chr2R 11009815 intron luna - chr2R 11014416 intron luna - chr2R 11019017 intron luna - chr2R_13_11010001 chr2R_11010001 RAL-595 362 chr2R 11019882 11019895 chr2R 11024948 11024961 jockey 4 5066 2.5 2.0 2.2 1.2 5079 chr2R 11019882 intron luna - chr2R 11022422 intron luna - chr2R 11024961 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-595 363 chr2R 11207820 11207847 chr2R 11208012 11208017 BS 13 187 4.5 2.0 3.2 3.1 197 chr2R 11207820 intron shn + chr2R 11207918 intron shn + chr2R 11208017 intron shn + chr2R_13_11205001 chr2R_11205001 RAL-595 364 chr2R 11374392 11374411 chr2R 11374471 11374490 9 79 0.5 4.0 2.2 2.8 98 chr2R 11374392 exon CG13203 + chr2R 11374441 intron CG13203 + chr2R 11374490 intron CG13203 + chr2R_9_11370001 chr2R_11370001 RAL-595 365 chr2R 11415428 11415458 chr2R 11415504 11415534 4 76 1.5 2.5 2.0 1.3 106 chr2R 11415428 intron,3` UTR Drip -,CG7763 + chr2R 11415481 intron Drip - chr2R 11415534 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-595 366 chr2R 11465840 11465866 chr2R 11465924 11465926 7 79 1.0 1.0 1.0 3.5 86 chr2R 11465840 intergenic not near genes chr2R 11465883 intergenic not near genes chr2R 11465926 intergenic not near genes chr2R_7_11465001 chr2R_11465001 RAL-595 367 chr2R 11677871 11677897 chr2R 11677949 11677975 5 78 0.0 2.5 1.2 2.3 104 chr2R 11677871 intron,exon Roc2 -,Tret1-2 + chr2R 11677923 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-595 368 chr2R 8518779 8518796 chr2R 12066173 12066198 10 3547396 10.5 11.0 10.8 0.8 3547419 chr2R 8518779 intron mtt - chr2R 10292488 intron CAP + chr2R 12066198 intron CG8888 - chr2R_10_10290001 chr2R_10290001 RAL-595 369 chr2R 12103274 12103291 chr2R 12103532 12103559 6 262 2.5 0.5 1.5 2.4 285 chr2R 12103274 intron jeb - chr2R 12103416 intron jeb - chr2R 12103559 intron jeb - chr2R_6_12100001 chr2R_12100001 RAL-595 370 chr2R 12187471 12187507 chr2R 12190087 12190123 29 2617 90.0 56.5 73.2 0.4 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_29_12185001 chr2R_12185001 RAL-595 371 chr2R 12363384 12363417 chr2R 12363816 12363849 9 429 1.5 4.5 3.0 2.2 465 chr2R 12363384 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-595 372 chr2R 12481157 12481165 chr2R 12482947 12482966 roo 6 1797 2.5 3.0 2.8 1.6 1809 chr2R 12481157 exon Dh44-R2 + chr2R 12482062 intron Dh44-R2 + chr2R 12482966 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-595 373 chr2R 12501719 12501723 chr2R 12503850 12503885 Rt1c 7 2156 0.5 5.0 2.8 1.8 2166 chr2R 12501719 intron fdl - chr2R 12502802 intron fdl - chr2R 12503885 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-595 374 chr2R 12555443 12555459 chr2R 12556148 12556157 6 702 6.0 0.5 3.2 1.4 714 chr2R 12555443 intron fra + chr2R 12555800 intron fra + chr2R 12556157 intron fra + chr2R_6_12555001 chr2R_12555001 RAL-595 375 chr2R 12555462 12555472 chr2R 12556147 12556175 8 698 5.5 0.5 3.0 2.0 713 chr2R 12555462 intron fra + chr2R 12555818 intron fra + chr2R 12556175 intron fra + chr2R_8_12555001 chr2R_12555001 RAL-595 376 chr2R 12610720 12610746 chr2R 12610815 12610841 5 95 2.0 3.0 2.5 1.4 121 chr2R 12610720 exon Amph + chr2R 12610780 intron Amph + chr2R 12610841 intron Amph + chr2R_5_12610001 chr2R_12610001 RAL-595 377 chr2R 12695288 12695304 chr2R 12695351 12695352 4 57 2.5 0.0 1.2 1.8 64 chr2R 12695288 intergenic not near genes chr2R 12695320 intergenic not near genes chr2R 12695352 intergenic not near genes chr2R_4_12695001 chr2R_12695001 RAL-595 378 chr2R 12726327 12726355 chr2R 12726419 12726447 4 92 2.5 1.5 2.0 1.3 120 chr2R 12726327 intron CG42663 + chr2R 12726387 intron CG42663 + chr2R 12726447 intron CG42663 + chr2R_4_12725001 chr2R_12725001 RAL-595 379 chr2R 12819454 12819478 chr2R 12824525 12824547 jockey 6 5069 0.5 2.5 1.5 2.4 5093 chr2R 12819454 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-595 380 chr2R 12836400 12836407 chr2R 12836487 12836494 4 87 0.5 1.0 0.8 2.2 94 chr2R 12836400 intergenic not near genes chr2R 12836447 intergenic not near genes chr2R 12836494 intergenic not near genes chr2R_4_12835001 chr2R_12835001 RAL-595 381 chr2R 12908483 12908501 chr2R 12908566 12908584 4 83 0.5 1.5 1.0 2.0 101 chr2R 12908483 intergenic not near genes chr2R 12908534 intergenic not near genes chr2R 12908584 intergenic not near genes chr2R_4_12905001 chr2R_12905001 RAL-595 382 chr2R 13136843 13136870 chr2R 13141641 13141668 Doc 7 4798 3.0 4.5 3.8 1.5 4825 chr2R 13136843 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-595 383 chr2R 13334273 13334301 chr2R 13334359 13334387 7 84 0.5 0.5 0.5 4.7 114 chr2R 13334273 intron CR44206 - chr2R 13334330 intron CR44206 - chr2R 13334387 intron CR44206 - chr2R_7_13330001 chr2R_13330001 RAL-595 384 chr2R 13431489 13431518 chr2R 13431568 13431597 6 79 1.0 0.5 0.8 3.3 108 chr2R 13431489 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431597 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-595 385 chr2R 13580502 13580534 chr2R 13580848 13580882 jockey 9 345 0.5 2.0 1.2 4.1 380 chr2R 13580502 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580882 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-595 386 chr2R 13768984 13769006 chr2R 13769082 13769105 6 99 2.0 5.5 3.8 1.2 121 chr2R 13768984 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-595 387 chr2R 14130065 14130080 chr2R 14130230 14130239 7 165 2.0 1.5 1.8 2.5 174 chr2R 14130065 intron Prosap - chr2R 14130152 intron Prosap - chr2R 14130239 intron Prosap - chr2R_7_14130001 chr2R_14130001 RAL-595 388 chr2R 14225322 14225352 chr2R 14225436 14225453 8 106 6.5 0.5 3.5 1.8 131 chr2R 14225322 intron CG8468 + chr2R 14225388 intron CG8468 + chr2R 14225453 intron CG8468 + chr2R_8_14225001 chr2R_14225001 RAL-595 389 chr2R 14345682 14345707 chr2R 14346530 14346544 9 844 2.0 5.0 3.5 2.0 862 chr2R 14345682 intron Shroom + chr2R 14346113 intron Shroom + chr2R 14346544 intron Shroom + chr2R_9_14345001 chr2R_14345001 RAL-595 390 chr2R 14345708 14345709 chr2R 14346529 14346556 5 838 2.0 5.0 3.5 1.1 848 chr2R 14345708 intron Shroom + chr2R 14346132 intron Shroom + chr2R 14346556 intron Shroom + chr2R_5_14345001 chr2R_14345001 RAL-595 391 chr2R 14393871 14393885 chr2R 14393956 14393970 8 84 2.0 1.5 1.8 2.9 99 chr2R 14393871 intergenic not near genes chr2R 14393920 intergenic not near genes chr2R 14393970 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-595 392 chr2R 14393887 14393899 chr2R 14393951 14393984 5 80 1.5 1.5 1.5 2.0 97 chr2R 14393887 intergenic not near genes chr2R 14393936 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_5_14390001 chr2R_14390001 RAL-595 393 chr2R 14405553 14405585 chr2R 14405890 14405920 8 335 1.0 0.5 0.8 4.4 367 chr2R 14405553 intergenic not near genes chr2R 14405736 intergenic not near genes chr2R 14405920 intergenic not near genes chr2R_8_14405001 chr2R_14405001 RAL-595 394 chr2R 14415346 14415369 chr2R 14415453 14415475 4 107 2.5 0.5 1.5 1.6 129 chr2R 14415346 intergenic not near genes chr2R 14415410 intergenic not near genes chr2R 14415475 intergenic not near genes chr2R_4_14415001 chr2R_14415001 RAL-595 395 chr2R 14467307 14467326 chr2R 14476464 14476478 roo 6 9155 1.0 4.0 2.5 1.7 9171 chr2R 14467307 intergenic not near genes chr2R 14471892 intergenic not near genes chr2R 14476478 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-595 396 chr2R 14530778 14530791 chr2R 14530849 14530870 5 77 1.5 2.5 2.0 1.7 92 chr2R 14530778 intron ttv + chr2R 14530824 intron ttv + chr2R 14530870 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-595 397 chr2R 14634293 14634315 chr2R 14634381 14634403 6 87 1.5 3.5 2.5 1.7 110 chr2R 14634293 intergenic not near genes chr2R 14634348 intergenic not near genes chr2R 14634403 intergenic not near genes chr2R_6_14630001 chr2R_14630001 RAL-595 398 chr2R 14635252 14635274 chr2R 14635336 14635356 5 81 5.0 7.0 6.0 0.7 104 chr2R 14635252 intergenic not near genes chr2R 14635304 intergenic not near genes chr2R 14635356 intergenic not near genes chr2R_5_14635001 chr2R_14635001 RAL-595 399 chr2R 14655462 14655480 chr2R 14655664 14655682 6 202 0.5 1.0 0.8 3.3 220 chr2R 14655462 intergenic not near genes chr2R 14655572 intergenic not near genes chr2R 14655682 intergenic not near genes chr2R_6_14655001 chr2R_14655001 RAL-595 400 chr2R 14816105 14816139 chr2R 14816200 14816235 5 93 1.0 2.5 1.8 1.8 130 chr2R 14816105 intergenic not near genes chr2R 14816170 intergenic not near genes chr2R 14816235 intergenic not near genes chr2R_5_14815001 chr2R_14815001 RAL-595 401 chr2R 14917849 14917878 chr2R 14917934 14917963 9 84 1.0 3.5 2.2 2.8 114 chr2R 14917849 intron CG10249 - chr2R 14917906 intron CG10249 - chr2R 14917963 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-595 402 chr2R 15051094 15051106 chr2R 15051176 15051188 5 81 3.0 3.0 3.0 1.2 94 chr2R 15051094 intergenic not near genes chr2R 15051141 intergenic not near genes chr2R 15051188 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-595 403 chr2R 15084977 15085002 chr2R 15092026 15092051 297 8 7049 6.0 0.5 3.2 1.9 7074 chr2R 15084977 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092051 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-595 404 chr2R 15119316 15119344 chr2R 15127797 15127825 Tirant 7 8479 2.0 2.0 2.0 2.3 8509 chr2R 15119316 intron chn + chr2R 15123570 intron chn + chr2R 15127825 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-595 405 chr2R 15296161 15296166 chr2R 15296244 15296248 4 83 3.0 2.5 2.8 1.1 87 chr2R 15296161 intron Trpm - chr2R 15296204 intron Trpm - chr2R 15296248 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-595 406 chr2R 15373844 15373878 chr2R 15374003 15374037 4 159 0.0 6.0 3.0 1.0 193 chr2R 15373844 intergenic not near genes chr2R 15373940 intergenic not near genes chr2R 15374037 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-595 407 chr2R 15588793 15588823 chr2R 15588873 15588878 9 72 0.0 2.0 1.0 4.5 85 chr2R 15588793 intergenic not near genes chr2R 15588836 intergenic not near genes chr2R 15588878 intergenic not near genes chr2R_9_15585001 chr2R_15585001 RAL-595 408 chr2R 15685365 15685395 chr2R 15685465 15685485 5 99 4.0 2.0 3.0 1.2 120 chr2R 15685365 intron,exon Ranbp11 +,CG30082 - chr2R 15685425 intron,intron Ranbp11 +,CG30082 - chr2R 15685485 intron,intron Ranbp11 +,CG30082 - chr2R_5_15685001 chr2R_15685001 RAL-595 409 chr2R 15845175 15845184 chr2R 15845252 15845263 4 78 0.0 4.5 2.2 1.2 88 chr2R 15845175 intron,intron tun +,CG8249 - chr2R 15845219 intron,intron tun +,CG8249 - chr2R 15845263 intron,intron tun +,CG8249 - chr2R_4_15845001 chr2R_15845001 RAL-595 410 chr2R 16245417 16245427 chr2R 16245510 16245521 6 94 0.0 2.0 1.0 3.0 104 chr2R 16245417 intron CngA - chr2R 16245469 intron CngA - chr2R 16245521 intron CngA - chr2R_6_16245001 chr2R_16245001 RAL-595 411 chr2R 16489267 16489297 chr2R 16489351 16489367 6 82 1.0 3.0 2.0 2.0 100 chr2R 16489267 intergenic CG33459 + chr2R 16489317 intergenic CG33459 + chr2R 16489367 intergenic CG33459 + chr2R_6_16485001 chr2R_16485001 RAL-595 412 chr2R 16503876 16503892 chr2R 16503966 16503982 5 90 2.5 2.0 2.2 1.6 106 chr2R 16503876 intron Sema-2a + chr2R 16503929 intron Sema-2a + chr2R 16503982 intron Sema-2a + chr2R_5_16500001 chr2R_16500001 RAL-595 413 chr2R 16547028 16547031 chr2R 16547093 16547111 4 71 0.0 0.5 0.2 3.3 83 chr2R 16547028 intergenic not near genes chr2R 16547070 intergenic not near genes chr2R 16547111 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-595 414 chr2R 17120283 17120299 chr2R 17120381 17120397 5 97 4.5 2.5 3.5 1.1 114 chr2R 17120283 5` UTR Amy-p - chr2R 17120340 intergenic Amy-p - chr2R 17120397 intergenic Amy-p - chr2R_5_17120001 chr2R_17120001 RAL-595 415 chr2R 17176358 17176389 chr2R 17182548 17182579 diver 4 6189 1.5 2.5 2.0 1.3 6221 chr2R 17176358 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_4_17175001 chr2R_17175001 RAL-595 416 chr2R 17455338 17455358 chr2R 17455428 17455443 5 86 3.5 7.0 5.2 0.8 105 chr2R 17455338 exon CG10764 + chr2R 17455390 exon CG10764 + chr2R 17455443 exon CG10764 + chr2R_5_17455001 chr2R_17455001 RAL-595 417 chr2R 17629607 17629617 chr2R 17629685 17629696 7 79 4.0 1.5 2.8 1.8 89 chr2R 17629607 intron,intron CG10936 -,rhi - chr2R 17629652 intron,intron CG10936 -,rhi - chr2R 17629696 intron,intron CG10936 -,rhi - chr2R_7_17625001 chr2R_17625001 RAL-595 418 chr2R 17709997 17710112 chr2R 17710088 17710190 5 83 0.0 0.0 0.0 5.0 193 chr2R 17709997 intron CG6424 - chr2R 17710094 intron CG6424 - chr2R 17710190 intron CG6424 - chr2R_5_17710001 chr2R_17710001 RAL-595 419 chr2R 17784026 17784054 chr2R 17784265 17784293 pogo 11 239 0.0 0.5 0.2 9.2 267 chr2R 17784026 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784293 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-595 420 chr2R 17898745 17898771 chr2R 17898834 17898859 5 88 1.0 1.5 1.2 2.3 114 chr2R 17898745 intron Elk + chr2R 17898802 intron Elk + chr2R 17898859 intron Elk + chr2R_5_17895001 chr2R_17895001 RAL-595 421 chr2R 18323808 18323839 chr2R 18323898 18323931 6 91 0.0 4.5 2.2 1.9 123 chr2R 18323808 intron sbb - chr2R 18323870 intron sbb - chr2R 18323931 intron sbb - chr2R_6_18320001 chr2R_18320001 RAL-595 422 chr2R 18528214 18528220 chr2R 18528281 18528305 5 75 1.0 6.0 3.5 1.1 91 chr2R 18528214 intron CG10924 + chr2R 18528260 intron CG10924 + chr2R 18528305 intron CG10924 + chr2R_5_18525001 chr2R_18525001 RAL-595 423 chr2R 18575796 18575825 chr2R 18581983 18582013 3S18 5 6179 2.0 2.0 2.0 1.7 6217 chr2R 18575796 intron GEFmeso - chr2R 18578904 intron GEFmeso - chr2R 18582013 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-595 424 chr2R 18590867 18590890 chr2R 18600019 18600042 roo 7 9152 4.5 2.5 3.5 1.6 9175 chr2R 18590867 intron GEFmeso - chr2R 18595454 intron GEFmeso - chr2R 18600042 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-595 425 chr2R 18646411 18646437 chr2R 18646556 18646582 7 145 0.5 1.5 1.0 3.5 171 chr2R 18646411 intron SP2637 - chr2R 18646496 intron SP2637 - chr2R 18646582 intron SP2637 - chr2R_7_18645001 chr2R_18645001 RAL-595 426 chr2R 18726902 18727100 chr2R 18726984 18727273 17 155 2.5 1.5 2.0 5.7 371 chr2R 18726902 intron Hs3st-A + chr2R 18727088 intron Hs3st-A + chr2R 18727273 intron Hs3st-A + chr2R_17_18725001 chr2R_18725001 RAL-595 427 chr2R 18778210 18778227 chr2R 18778299 18778316 5 90 3.0 4.0 3.5 1.1 106 chr2R 18778210 intergenic not near genes chr2R 18778263 intergenic not near genes chr2R 18778316 intergenic not near genes chr2R_5_18775001 chr2R_18775001 RAL-595 428 chr2R 18785915 18785948 chr2R 18785993 18786027 9 74 4.0 3.5 3.8 1.9 112 chr2R 18785915 intron CG15080 + chr2R 18785971 intron CG15080 + chr2R 18786027 intron CG15080 + chr2R_9_18785001 chr2R_18785001 RAL-595 429 chr2R 18827714 18827721 chr2R 18827794 18827801 4 80 1.5 0.0 0.8 2.2 87 chr2R 18827714 intron CG15097 - chr2R 18827758 intron CG15097 - chr2R 18827801 intron CG15097 - chr2R_4_18825001 chr2R_18825001 RAL-595 430 chr2R 18964919 18964951 chr2R 18964995 18965027 5 76 1.5 2.0 1.8 1.8 108 chr2R 18964919 intergenic not near genes chr2R 18964973 intergenic not near genes chr2R 18965027 intergenic not near genes chr2R_5_18960001 chr2R_18960001 RAL-595 431 chr2R 18984466 18984485 chr2R 18984725 18984744 5 259 3.0 1.0 2.0 1.7 278 chr2R 18984466 intergenic not near genes chr2R 18984605 intergenic not near genes chr2R 18984744 intergenic not near genes chr2R_5_18980001 chr2R_18980001 RAL-595 432 chr2R 18992016 18992050 chr2R 18992157 18992191 9 140 1.5 0.5 1.0 4.5 175 chr2R 18992016 intron tn + chr2R 18992104 intron tn + chr2R 18992191 intron tn + chr2R_9_18990001 chr2R_18990001 RAL-595 433 chr2R 19012945 19012962 chr2R 19013038 19013056 4 93 1.0 5.5 3.2 1.0 111 chr2R 19012945 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013056 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-595 434 chr2R 19194508 19194526 chr2R 19194899 19194919 6 392 5.0 2.0 3.5 1.3 411 chr2R 19194508 intron hppy + chr2R 19194714 intron hppy + chr2R 19194919 intron hppy + chr2R_6_19190001 chr2R_19190001 RAL-595 435 chr2R 19522386 19522420 chr2R 19522467 19522501 6 81 0.5 3.5 2.0 2.0 115 chr2R 19522386 3` UTR sm - chr2R 19522444 3` UTR sm - chr2R 19522501 3` UTR sm - chr2R_6_19520001 chr2R_19520001 RAL-595 436 chr2R 19555583 19555607 chr2R 19555667 19555686 14 82 4.5 3.5 4.0 2.8 103 chr2R 19555583 intron sm - chr2R 19555634 intron sm - chr2R 19555686 intron sm - chr2R_14_19555001 chr2R_19555001 RAL-595 437 chr2R 19582882 19582911 chr2R 19583253 19583282 9 370 0.5 2.5 1.5 3.6 400 chr2R 19582882 intron sm - chr2R 19583082 intron sm - chr2R 19583282 intron sm - chr2R_9_19580001 chr2R_19580001 RAL-595 438 chr2R 19776595 19776624 chr2R 19779918 19779947 jockey 8 3323 10.5 3.0 6.8 1.0 3352 chr2R 19776595 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779947 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-595 439 chr2R 19922607 19922625 chr2R 19922684 19922702 6 73 4.5 2.0 3.2 1.4 95 chr2R 19922607 intergenic not near genes chr2R 19922654 intergenic not near genes chr2R 19922702 intergenic not near genes chr2R_6_19920001 chr2R_19920001 RAL-595 440 chr2R 19957429 19957460 chr2R 19962630 19962662 copia 9 5200 3.5 2.5 3.0 2.2 5233 chr2R 19957429 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_9_19960001 chr2R_19960001 RAL-595 441 chr2R 20196757 20196782 chr2R 20196864 20196871 5 104 1.5 0.0 0.8 2.8 114 chr2R 20196757 intergenic not near genes chr2R 20196814 intergenic not near genes chr2R 20196871 intergenic not near genes chr2R_5_20195001 chr2R_20195001 RAL-595 442 chr2R 20326765 20326793 chr2R 20326838 20326852 4 71 0.0 1.0 0.5 2.7 87 chr2R 20326765 5` UTR MED8 - chr2R 20326808 intergenic MED8 -,CG8929 + chr2R 20326852 intergenic MED8 -,CG8929 + chr2R_4_20325001 chr2R_20325001 RAL-595 443 chr2R 20440082 20440114 chr2R 20440191 20440223 6 109 2.0 2.0 2.0 2.0 141 chr2R 20440082 intron CG12484 + chr2R 20440152 intron CG12484 + chr2R 20440223 intron CG12484 + chr2R_6_20440001 chr2R_20440001 RAL-595 444 chr2R 20442940 20442949 chr2R 20443088 20443097 4 150 13.5 24.0 18.8 0.2 157 chr2R 20442940 intron CG12484 + chr2R 20443018 intron CG12484 + chr2R 20443097 intron CG12484 + chr2R_4_20440001 chr2R_20440001 RAL-595 445 chr2R 20499619 20499631 chr2R 20499695 20499707 6 76 2.0 0.0 1.0 3.0 88 chr2R 20499619 intergenic not near genes chr2R 20499663 intergenic not near genes chr2R 20499707 intergenic not near genes chr2R_6_20495001 chr2R_20495001 RAL-595 446 chr2R 20506213 20506240 chr2R 20506319 20506346 10 103 4.0 3.5 3.8 2.1 133 chr2R 20506213 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506280 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506346 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_10_20505001 chr2R_20505001 RAL-595 447 chr2R 20523038 20523066 chr2R 20523148 20523171 8 110 5.0 1.0 3.0 2.0 133 chr2R 20523038 intergenic not near genes chr2R 20523104 intergenic not near genes chr2R 20523171 intergenic not near genes chr2R_8_20520001 chr2R_20520001 RAL-595 448 chr2R 20706644 20706675 chr2R 20706827 20706858 9 183 1.5 3.0 2.2 2.8 214 chr2R 20706644 intron dpr + chr2R 20706751 intron dpr + chr2R 20706858 intron dpr + chr2R_9_20705001 chr2R_20705001 RAL-595 449 chr2R 20755878 20755911 chr2R 20755978 20756011 7 100 1.0 4.5 2.8 1.8 133 chr2R 20755878 intergenic not near genes chr2R 20755944 intergenic not near genes chr2R 20756011 intergenic not near genes chr2R_7_20755001 chr2R_20755001 RAL-595 450 chr2R 20783312 20783325 chr2R 20788084 20788092 F-element 4 4769 1.5 2.0 1.8 1.4 4780 chr2R 20783312 intergenic not near genes chr2R 20785702 intergenic not near genes chr2R 20788092 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-595 451 chr2R 20962912 20962933 chr2R 20963010 20963031 4 98 2.5 0.0 1.2 1.8 119 chr2R 20962912 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963031 intergenic not near genes chr2R_4_20960001 chr2R_20960001 RAL-595 452 chr2R 20967036 20967039 chr2R 20967113 20967116 4 76 4.0 0.0 2.0 1.3 80 chr2R 20967036 intergenic not near genes chr2R 20967076 intergenic not near genes chr2R 20967116 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-595 453 chr2R 21136896 21136939 chr2R 21136980 21137017 6 83 0.0 1.0 0.5 4.0 121 chr2R 21136896 intron Magi - chr2R 21136956 intron Magi - chr2R 21137017 intron Magi - chr2R_6_21135001 chr2R_21135001 RAL-595 454 chr2R 21141118 21141142 chr2R 21141213 21141238 6 96 1.0 0.5 0.8 3.3 120 chr2R 21141118 intron Magi - chr2R 21141178 intron Magi - chr2R 21141238 intron Magi - chr2R_6_21140001 chr2R_21140001 RAL-595 455 chr2R 21151119 21151144 chr2R 21153752 21153776 opus 7 2633 2.0 0.5 1.2 3.2 2657 chr2R 21151119 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153776 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-595 456 chr2R 21414195 21414207 chr2R 21414352 21414364 4 157 0.0 5.0 2.5 1.1 169 chr2R 21414195 intron Sdc - chr2R 21414280 intron Sdc - chr2R 21414364 intron Sdc - chr2R_4_21410001 chr2R_21410001 RAL-595 457 chr2R 21476793 21476828 chr2R 21476977 21477012 5 184 2.5 1.0 1.8 1.8 219 chr2R 21476793 intron Sdc - chr2R 21476902 intron Sdc - chr2R 21477012 intron Sdc - chr2R_5_21475001 chr2R_21475001 RAL-595 458 chr2R 21571125 21571152 chr2R 21571202 21571229 4 73 2.0 4.0 3.0 1.0 104 chr2R 21571125 intron CG10440 - chr2R 21571177 intron CG10440 - chr2R 21571229 intron CG10440 - chr2R_4_21570001 chr2R_21570001 RAL-595 459 chr2R 21700155 21700186 chr2R 21700240 21700272 6 84 2.0 2.0 2.0 2.0 117 chr2R 21700155 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700272 intron HmgZ - chr2R_6_21700001 chr2R_21700001 RAL-595 460 chr2R 21738281 21738311 chr2R 21747441 21747471 roo 7 9155 1.5 0.0 0.8 3.9 9190 chr2R 21738281 intergenic not near genes chr2R 21742876 intergenic not near genes chr2R 21747471 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-595 461 chr2R 21753099 21753112 chr2R 21753584 21753596 roo 4 485 2.0 3.5 2.8 1.1 497 chr2R 21753099 intergenic not near genes chr2R 21753348 intergenic not near genes chr2R 21753596 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-595 462 chr2R 21758338 21758366 chr2R 21758647 21758673 4 308 0.5 1.5 1.0 2.0 335 chr2R 21758338 intergenic Grx-1 + chr2R 21758506 intergenic not near genes chr2R 21758673 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-595 463 chr2R 21785251 21785283 chr2R 21785627 21785660 7 374 1.5 1.0 1.2 3.2 409 chr2R 21785251 intergenic not near genes chr2R 21785456 intergenic not near genes chr2R 21785660 intergenic not near genes chr2R_7_21785001 chr2R_21785001 RAL-595 464 chr2R 21886152 21886165 chr2R 21886231 21886243 4 79 0.5 0.0 0.2 3.3 91 chr2R 21886152 intron Fili + chr2R 21886198 intron Fili + chr2R 21886243 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-595 465 chr2R 21905238 21905262 chr2R 21905383 21905407 6 145 0.5 1.0 0.8 3.3 169 chr2R 21905238 intron Fili + chr2R 21905322 intron Fili + chr2R 21905407 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-595 466 chr2R 21919882 21919904 chr2R 21919965 21919992 7 87 2.0 2.0 2.0 2.3 110 chr2R 21919882 intron Fili + chr2R 21919937 intron Fili + chr2R 21919992 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-595 467 chr2R 22014211 22014231 chr2R 22014287 22014306 9 74 1.0 2.0 1.5 3.6 95 chr2R 22014211 intron CG34370 - chr2R 22014258 intron CG34370 - chr2R 22014306 intron CG34370 - chr2R_9_22010001 chr2R_22010001 RAL-595 468 chr2R 22072691 22072713 chr2R 22072776 22072797 9 85 2.0 2.5 2.2 2.8 106 chr2R 22072691 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072797 exon CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-595 469 chr2R 22095967 22095994 chr2R 22096048 22096077 7 83 0.5 3.5 2.0 2.3 110 chr2R 22095967 intron CG11073 - chr2R 22096022 intron CG11073 - chr2R 22096077 intron CG11073 - chr2R_7_22095001 chr2R_22095001 RAL-595 470 chr2R 22102116 22102160 chr2R 22102204 22102237 4 84 0.0 1.0 0.5 2.7 121 chr2R 22102116 intergenic not near genes chr2R 22102176 intergenic not near genes chr2R 22102237 intergenic not near genes chr2R_4_22100001 chr2R_22100001 RAL-595 471 chr2R 22148068 22148094 chr2R 22148167 22148192 9 98 2.5 1.5 2.0 3.0 124 chr2R 22148068 intron a + chr2R 22148130 intron a + chr2R 22148192 intron a + chr2R_9_22145001 chr2R_22145001 RAL-595 472 chr2R 22173222 22173245 chr2R 22173311 22173334 12 88 1.0 3.5 2.2 3.8 112 chr2R 22173222 exon CG3045 - chr2R 22173278 exon CG3045 - chr2R 22173334 exon CG3045 - chr2R_12_22170001 chr2R_22170001 RAL-595 473 chr2R 22181306 22181322 chr2R 22181373 22181373 7 66 1.0 2.5 1.8 2.5 67 chr2R 22181306 intron,exon CG11170 -,CG11275 + chr2R 22181340 intron,exon CG11170 -,CG11275 + chr2R 22181373 intron,exon CG11170 -,CG11275 + chr2R_7_22180001 chr2R_22180001 RAL-595 474 chr2R 22205868 22205880 chr2R 22205960 22205970 5 91 4.0 2.0 3.0 1.2 102 chr2R 22205868 intergenic CG3290 -,CG3292 - chr2R 22205919 intergenic CG3290 -,CG3292 - chr2R 22205970 intergenic CG3290 -,CG3292 - chr2R_5_22205001 chr2R_22205001 RAL-595 475 chr2R 22349694 22349725 chr2R 22351476 22351509 jockey 7 1781 1.0 2.5 1.8 2.5 1815 chr2R 22349694 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-595 476 chr2R 22360384 22360410 chr2R 22360817 22360817 jockey 4 426 1.0 2.0 1.5 1.6 433 chr2R 22360384 intron Liprin-gamma - chr2R 22360600 intron Liprin-gamma - chr2R 22360817 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-595 477 chr2R 22411497 22411529 chr2R 22411575 22411594 5 75 0.0 2.5 1.2 2.3 97 chr2R 22411497 5` UTR qkr58E-3 - chr2R 22411546 intergenic qkr58E-3 -,Mes4 + chr2R 22411594 intergenic qkr58E-3 -,Mes4 + chr2R_5_22410001 chr2R_22410001 RAL-595 478 chr2R 22620838 22620857 chr2R 22620938 22620957 6 99 0.0 3.5 1.8 2.1 119 chr2R 22620838 5` UTR CG33143 + chr2R 22620898 5` UTR CG33143 + chr2R 22620957 5` UTR CG33143 + chr2R_6_22620001 chr2R_22620001 RAL-595 479 chr2R 22623470 22623481 chr2R 22623604 22623620 8 139 2.0 6.5 4.2 1.5 150 chr2R 22623470 intron CG33143 + chr2R 22623545 intron CG33143 + chr2R 22623620 intron CG33143 + chr2R_8_22620001 chr2R_22620001 RAL-595 480 chr2R 22690438 22690450 chr2R 22690568 22690581 5 131 0.0 1.5 0.8 2.8 143 chr2R 22690438 intergenic CR44764 +,CR44763 + chr2R 22690510 5` UTR CR44764 + chr2R 22690581 5` UTR CR44764 + chr2R_5_22690001 chr2R_22690001 RAL-595 481 chr2R 22774962 22774992 chr2R 22775380 22775409 jockey 6 418 2.5 0.5 1.5 2.4 447 chr2R 22774962 intron CG42260 - chr2R 22775186 intron CG42260 - chr2R 22775409 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-595 482 chr2R 22781954 22781990 chr2R 22782141 22782177 9 186 1.0 1.5 1.2 4.1 223 chr2R 22781954 intron CG42260 - chr2R 22782066 intron CG42260 - chr2R 22782177 intron CG42260 - chr2R_9_22780001 chr2R_22780001 RAL-595 483 chr2R 22835371 22835389 chr2R 22835446 22835465 5 74 3.0 1.5 2.2 1.6 94 chr2R 22835371 exon CG12490 + chr2R 22835418 exon CG12490 + chr2R 22835465 exon CG12490 + chr2R_5_22835001 chr2R_22835001 RAL-595 484 chr2R 23052650 23052685 chr2R 23052726 23052761 11 75 0.5 2.0 1.2 5.0 111 chr2R 23052650 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052761 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-595 485 chr2R 23070410 23070414 chr2R 23070506 23070507 4 95 6.5 4.0 5.2 0.6 97 chr2R 23070410 intron l(2)k09913 + chr2R 23070458 intron l(2)k09913 + chr2R 23070507 intron l(2)k09913 + chr2R_4_23070001 chr2R_23070001 RAL-595 486 chr2R 23070415 23070435 chr2R 23070505 23070529 4 94 4.0 4.0 4.0 0.8 114 chr2R 23070415 intron l(2)k09913 + chr2R 23070472 intron l(2)k09913 + chr2R 23070529 intron l(2)k09913 + chr2R_4_23070001 chr2R_23070001 RAL-595 487 chr2R 23138446 23138459 chr2R 23138531 23138544 6 84 1.0 1.0 1.0 3.0 98 chr2R 23138446 intergenic CG30192 + chr2R 23138495 intergenic CG30192 + chr2R 23138544 intergenic CG30192 + chr2R_6_23135001 chr2R_23135001 RAL-595 488 chr2R 23186105 23186113 chr2R 23186250 23186258 4 144 0.5 1.5 1.0 2.0 153 chr2R 23186105 intron CG34371 - chr2R 23186182 intron CG34371 - chr2R 23186258 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-595 489 chr2R 23222399 23222427 chr2R 23223173 23223201 7 774 1.5 1.0 1.2 3.2 802 chr2R 23222399 intergenic not near genes chr2R 23222800 intergenic not near genes chr2R 23223201 intergenic not near genes chr2R_7_23220001 chr2R_23220001 RAL-595 490 chr2R 23228297 23228326 chr2R 23228401 23228409 8 101 0.0 3.0 1.5 3.2 112 chr2R 23228297 intergenic not near genes chr2R 23228353 intergenic not near genes chr2R 23228409 intergenic not near genes chr2R_8_23225001 chr2R_23225001 RAL-595 491 chr2R 23350518 23350536 chr2R 23350637 23350663 8 121 2.0 2.0 2.0 2.7 145 chr2R 23350518 intergenic not near genes chr2R 23350590 intergenic not near genes chr2R 23350663 intergenic not near genes chr2R_8_23350001 chr2R_23350001 RAL-595 492 chr2R 23356282 23356303 chr2R 23356371 23356392 11 88 0.5 2.0 1.2 5.0 110 chr2R 23356282 3` UTR Rpi + chr2R 23356337 3` UTR Rpi + chr2R 23356392 3` UTR,3` UTR Rpi +,CG3500 - chr2R_11_23355001 chr2R_23355001 RAL-595 493 chr2R 23422652 23422678 chr2R 23422732 23422757 10 79 4.5 2.0 3.2 2.4 105 chr2R 23422652 intron CG9815 - chr2R 23422704 intron CG9815 - chr2R 23422757 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-595 494 chr2R 23429220 23429237 chr2R 23429445 23429447 5 221 5.0 5.0 5.0 0.8 227 chr2R 23429220 intron CG9815 - chr2R 23429334 intron CG9815 - chr2R 23429447 intron CG9815 - chr2R_5_23425001 chr2R_23425001 RAL-595 495 chr2R 23653990 23653997 chr2R 23654047 23654068 7 72 3.5 1.5 2.5 2.0 78 chr2R 23653990 3` UTR retn + chr2R 23654029 3` UTR retn + chr2R 23654068 3` UTR retn + chr2R_7_23650001 chr2R_23650001 RAL-595 496 chr2R 23739184 23739210 chr2R 23739262 23739288 7 77 3.0 2.5 2.8 1.8 104 chr2R 23739184 intron egl - chr2R 23739236 intron egl - chr2R 23739288 intron egl - chr2R_7_23735001 chr2R_23735001 RAL-595 497 chr2R 23747066 23747087 chr2R 23747614 23747635 5 548 1.5 1.0 1.2 2.3 569 chr2R 23747066 intergenic egl -,CG13560 + chr2R 23747350 intergenic CG13560 + chr2R 23747635 exon CG13560 + chr2R_5_23745001 chr2R_23745001 RAL-595 498 chr2R 23819931 23819946 chr2R 23820017 23820036 12 89 3.5 3.5 3.5 2.7 105 chr2R 23819931 intergenic CG5549 + chr2R 23819984 intergenic CG5549 + chr2R 23820036 intergenic CG5549 + chr2R_12_23815001 chr2R_23815001 RAL-595 499 chr2R 23914307 23914332 chr2R 23921931 23921941 412 6 7616 1.5 3.5 2.5 1.7 7634 chr2R 23914307 exon kcc + chr2R 23918124 intron kcc + chr2R 23921941 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-595 500 chr2R 23986422 23986450 chr2R 23986505 23986532 11 82 3.0 3.5 3.2 2.6 110 chr2R 23986422 intron Phm - chr2R 23986477 intron Phm - chr2R 23986532 intron Phm - chr2R_11_23985001 chr2R_23985001 RAL-595 501 chr2R 24118428 24118446 chr2R 24118513 24118531 6 85 5.0 2.5 3.8 1.2 103 chr2R 24118428 intron CG3257 + chr2R 24118480 intron CG3257 + chr2R 24118531 intron CG3257 + chr2R_6_24115001 chr2R_24115001 RAL-595 502 chr2R 24147066 24147095 chr2R 24154644 24154672 412 6 7578 2.0 1.5 1.8 2.1 7606 chr2R 24147066 intron Dat + chr2R 24150869 intron Dat + chr2R 24154672 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-595 503 chr2R 24219565 24219572 chr2R 24219670 24219677 5 105 0.0 4.0 2.0 1.7 112 chr2R 24219565 intron CG30419 - chr2R 24219621 intron CG30419 - chr2R 24219677 intron CG30419 - chr2R_5_24215001 chr2R_24215001 RAL-595 504 chr2R 24277406 24277428 chr2R 24277487 24277508 9 79 4.5 1.5 3.0 2.2 102 chr2R 24277406 intron nvy + chr2R 24277457 intron nvy + chr2R 24277508 intron nvy + chr2R_9_24275001 chr2R_24275001 RAL-595 505 chr2R 24351412 24351439 chr2R 24351493 24351520 7 80 2.5 1.0 1.8 2.5 108 chr2R 24351412 intron bs + chr2R 24351466 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_7_24350001 chr2R_24350001 RAL-595 506 chr2R 24353433 24353450 chr2R 24361795 24361812 roo 4 8362 1.0 4.0 2.5 1.1 8379 chr2R 24353433 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361812 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-595 507 chr2R 24383830 24383857 chr2R 24383911 24383938 5 76 4.0 2.5 3.2 1.2 108 chr2R 24383830 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-595 508 chr2R 24590113 24590142 chr2R 24590205 24590231 9 90 5.5 2.0 3.8 1.9 118 chr2R 24590113 intron pio + chr2R 24590172 intron pio + chr2R 24590231 intron pio + chr2R_9_24590001 chr2R_24590001 RAL-595 509 chr2R 24647587 24647611 chr2R 24655144 24655167 412 6 7556 3.0 1.0 2.0 2.0 7580 chr2R 24647587 intergenic not near genes chr2R 24651377 intergenic not near genes chr2R 24655167 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-595 510 chr2R 24719798 24719824 chr2R 24719907 24719935 13 106 1.5 3.0 2.2 4.1 137 chr2R 24719798 intron Mid1 - chr2R 24719866 intron Mid1 - chr2R 24719935 intron Mid1 - chr2R_13_24715001 chr2R_24715001 RAL-595 511 chr2R 24727882 24727917 chr2R 24735390 24735421 mdg1 13 7507 2.5 2.5 2.5 3.7 7539 chr2R 24727882 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735421 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-595 512 chr2R 24763617 24763643 chr2R 24765593 24765601 G2 10 1974 4.0 4.5 4.2 1.9 1984 chr2R 24763617 exon CG3894 + chr2R 24764609 intron CG3894 + chr2R 24765601 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-595 513 chr2R 24794362 24794379 chr2R 24794443 24794460 4 81 3.5 2.0 2.8 1.1 98 chr2R 24794362 intron CR43257 + chr2R 24794411 intron CR43257 + chr2R 24794460 intron CR43257 + chr2R_4_24790001 chr2R_24790001 RAL-595 514 chr2R 24823819 24823832 chr2R 24823923 24823936 5 104 2.0 6.0 4.0 1.0 117 chr2R 24823819 intron Dll + chr2R 24823878 intron Dll + chr2R 24823936 intron Dll + chr2R_5_24820001 chr2R_24820001 RAL-595 515 chr2R 24883884 24883914 chr2R 24883967 24883996 4 83 2.0 3.5 2.8 1.1 112 chr2R 24883884 intron NKAIN + chr2R 24883940 intron NKAIN + chr2R 24883996 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-595 516 chr2R 24943980 24944000 chr2R 24945692 24945714 4 1715 5.5 1.5 3.5 0.9 1734 chr2R 24943980 intron CG15861 - chr2R 24944847 5` UTR CG15861 - chr2R 24945714 5` UTR CG3770 + chr2R_4_24940001 chr2R_24940001 RAL-595 517 chr2R 25004907 25004921 chr2R 25004983 25004999 6 77 4.0 2.0 3.0 1.5 92 chr2R 25004907 intron zip - chr2R 25004953 intron zip - chr2R 25004999 intron zip - chr2R_6_25000001 chr2R_25000001 RAL-595 518 chr2R 25014543 25014573 chr2R 25014619 25014645 13 74 1.5 1.0 1.2 5.9 102 chr2R 25014543 intron uzip + chr2R 25014594 intron uzip + chr2R 25014645 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-595 519 chr2R 25114676 25114687 chr2R 25114988 25115009 4 312 20.0 8.5 14.2 0.3 333 chr2R 25114676 intron lov - chr2R 25114842 intron lov - chr2R 25115009 intron lov - chr2R_4_25110001 chr2R_25110001 RAL-595 520 chr2R 25114674 25114685 chr2R 25115011 25115013 4 332 20.5 6.5 13.5 0.3 339 chr2R 25114674 intron lov - chr2R 25114844 intron lov - chr2R 25115013 intron lov - chr2R_4_25110001 chr2R_25110001 RAL-595 521 chr2R 25116359 25116388 chr2R 25116457 25116457 4 89 1.5 0.0 0.8 2.2 98 chr2R 25116359 intron lov - chr2R 25116408 intron lov - chr2R 25116457 intron lov - chr2R_4_25115001 chr2R_25115001 RAL-595 522 chr2R 25124463 25124485 chr2R 25124554 25124576 4 91 0.5 1.0 0.8 2.2 113 chr2R 25124463 intron lov - chr2R 25124520 intron lov - chr2R 25124576 intron lov - chr2R_4_25120001 chr2R_25120001 RAL-595 523 chr2R 25135271 25135298 chr2R 25135356 25135383 6 85 2.5 2.5 2.5 1.7 112 chr2R 25135271 intron lov - chr2R 25135327 intron lov - chr2R 25135383 intron lov - chr2R_6_25135001 chr2R_25135001 RAL-595 524 chr3L 51389 51414 chr3L 51487 51512 11 98 0.5 3.0 1.8 3.9 123 chr3L 51389 intergenic not near genes chr3L 51450 intergenic not near genes chr3L 51512 intergenic not near genes chr3L_11_50001 chr3L_50001 RAL-595 525 chr3L 110211 110242 chr3L 119378 119408 roo 4 9167 2.0 3.5 2.8 1.1 9197 chr3L 110211 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119408 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-595 526 chr3L 470919 470951 chr3L 471146 471177 5 227 1.5 2.5 2.0 1.7 258 chr3L 470919 intron klar - chr3L 471048 intron klar - chr3L 471177 intron klar - chr3L_5_470001 chr3L_470001 RAL-595 527 chr3L 606893 606920 chr3L 606969 606999 4 74 2.0 0.0 1.0 2.0 106 chr3L 606893 intergenic Reg-2 - chr3L 606946 intergenic Reg-2 - chr3L 606999 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-595 528 chr3L 705905 705935 chr3L 706001 706031 4 96 1.0 0.0 0.5 2.7 126 chr3L 705905 intergenic CG13895 -,CR44514 + chr3L 705968 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_4_705001 chr3L_705001 RAL-595 529 chr3L 837544 837569 chr3L 837621 837635 6 73 2.0 2.5 2.2 1.9 91 chr3L 837544 intron CG13901 - chr3L 837590 intron CG13901 - chr3L 837635 intron CG13901 - chr3L_6_835001 chr3L_835001 RAL-595 530 chr3L 933925 933943 chr3L 934027 934046 4 103 1.0 4.0 2.5 1.1 121 chr3L 933925 intron Glut1 + chr3L 933986 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-595 531 chr3L 939773 939805 chr3L 940893 940898 jockey 12 1119 5.0 4.0 4.5 2.2 1125 chr3L 939773 intron Glut1 + chr3L 940336 intron Glut1 + chr3L 940898 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-595 532 chr3L 1011007 1011222 chr3L 1011088 1011298 5 77 5.0 3.5 4.2 1.0 291 chr3L 1011007 intron trio - chr3L 1011152 intron trio - chr3L 1011298 intron trio - chr3L_5_1010001 chr3L_1010001 RAL-595 533 chr3L 1015026 1015054 chr3L 1015138 1015165 13 111 4.0 2.5 3.2 3.1 139 chr3L 1015026 intron trio - chr3L 1015096 intron trio - chr3L 1015165 intron trio - chr3L_13_1015001 chr3L_1015001 RAL-595 534 chr3L 1109634 1109651 chr3L 1109721 1109739 5 86 6.0 3.5 4.8 0.9 105 chr3L 1109634 intergenic not near genes chr3L 1109686 intergenic not near genes chr3L 1109739 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-595 535 chr3L 1109658 1109662 chr3L 1109720 1109750 4 76 4.0 3.5 3.8 0.8 92 chr3L 1109658 intergenic not near genes chr3L 1109704 intergenic not near genes chr3L 1109750 intergenic not near genes chr3L_4_1105001 chr3L_1105001 RAL-595 536 chr3L 1217894 1217919 chr3L 1218524 1218549 6 630 1.0 2.5 1.8 2.1 655 chr3L 1217894 intron mwh + chr3L 1218222 intron,3` UTR mwh +,LysP - chr3L 1218549 intron,exon mwh +,LysP - chr3L_6_1215001 chr3L_1215001 RAL-595 537 chr3L 1219597 1219623 chr3L 1227329 1227356 412 13 7729 4.5 3.5 4.0 2.6 7759 chr3L 1219597 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-595 538 chr3L 1270758 1270768 chr3L 1270849 1270858 4 88 0.0 1.5 0.8 2.2 100 chr3L 1270758 intron CG9134 + chr3L 1270808 intron CG9134 + chr3L 1270858 intron CG9134 + chr3L_4_1270001 chr3L_1270001 RAL-595 539 chr3L 1278816 1278836 chr3L 1278897 1278907 6 80 0.5 3.0 1.8 2.1 91 chr3L 1278816 intron CG32333 + chr3L 1278862 intron CG32333 + chr3L 1278907 intron CG32333 + chr3L_6_1275001 chr3L_1275001 RAL-595 540 chr3L 1463421 1463434 chr3L 1463497 1463514 4 76 5.5 3.5 4.5 0.7 93 chr3L 1463421 intron Ptp61F - chr3L 1463468 intron Ptp61F - chr3L 1463514 intron Ptp61F - chr3L_4_1460001 chr3L_1460001 RAL-595 541 chr3L 1480996 1481020 chr3L 1481073 1481100 8 78 1.5 3.0 2.2 2.5 104 chr3L 1480996 intron stet - chr3L 1481048 intron stet - chr3L 1481100 intron stet - chr3L_8_1480001 chr3L_1480001 RAL-595 542 chr3L 1505995 1506018 chr3L 1513592 1513596 17.6 7 7592 4.5 3.5 4.0 1.4 7601 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509796 intron,intron Psa +,cue - chr3L 1513596 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-595 543 chr3L 1740858 1740875 chr3L 1741097 1741118 pogo 4 242 1.5 0.5 1.0 2.0 260 chr3L 1740858 intron Gk + chr3L 1740988 intron Gk + chr3L 1741118 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-595 544 chr3L 2139220 2139234 chr3L 2139287 2139314 4 76 2.5 1.5 2.0 1.3 94 chr3L 2139220 intron zormin - chr3L 2139267 intron zormin - chr3L 2139314 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-595 545 chr3L 2308013 2308027 chr3L 2308112 2308133 6 105 2.5 4.5 3.5 1.3 120 chr3L 2308013 intergenic not near genes chr3L 2308073 intergenic not near genes chr3L 2308133 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-595 546 chr3L 2331590 2331607 chr3L 2331667 2331683 4 76 2.0 1.5 1.8 1.4 93 chr3L 2331590 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331683 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-595 547 chr3L 2344483 2344508 chr3L 2344725 2344750 5 238 0.5 2.5 1.5 2.0 267 chr3L 2344483 3` UTR MsR1 + chr3L 2344616 3` UTR MsR1 + chr3L 2344750 3` UTR MsR1 + chr3L_5_2340001 chr3L_2340001 RAL-595 548 chr3L 2345102 2345136 chr3L 2345193 2345228 4 92 0.5 0.5 0.5 2.7 126 chr3L 2345102 3` UTR MsR1 + chr3L 2345165 3` UTR MsR1 + chr3L 2345228 3` UTR MsR1 + chr3L_4_2345001 chr3L_2345001 RAL-595 549 chr3L 2355446 2355449 chr3L 2355634 2355635 4 187 2.5 1.0 1.8 1.4 189 chr3L 2355446 intergenic not near genes chr3L 2355540 intergenic not near genes chr3L 2355635 intergenic not near genes chr3L_4_2355001 chr3L_2355001 RAL-595 550 chr3L 2447502 2447536 chr3L 2456658 2456692 roo 10 9154 1.5 3.5 2.5 2.9 9190 chr3L 2447502 intron CG45186 + chr3L 2452097 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-595 551 chr3L 2554058 2554086 chr3L 2554136 2554164 6 78 2.0 0.0 1.0 3.0 106 chr3L 2554058 5` UTR Spn - chr3L 2554111 5` UTR Spn - chr3L 2554164 5` UTR Spn - chr3L_6_2550001 chr3L_2550001 RAL-595 552 chr3L 2680515 2680525 chr3L 2680595 2680604 7 80 2.0 0.0 1.0 3.5 89 chr3L 2680515 intron Fife - chr3L 2680560 intron Fife - chr3L 2680604 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-595 553 chr3L 2795729 2795756 chr3L 2795852 2795879 5 123 0.0 1.5 0.8 2.8 150 chr3L 2795729 intron CG43444 - chr3L 2795804 intron CG43444 - chr3L 2795879 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-595 554 chr3L 2854488 2854500 chr3L 2854566 2854577 5 77 2.0 4.0 3.0 1.2 89 chr3L 2854488 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854577 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-595 555 chr3L 2907793 2907810 chr3L 2907966 2907988 8 174 18.0 28.5 23.2 0.3 195 chr3L 2907793 intron Shab + chr3L 2907890 intron Shab + chr3L 2907988 intron Shab + chr3L_8_2905001 chr3L_2905001 RAL-595 556 chr3L 2907791 2907825 chr3L 2907989 2907998 5 178 18.5 20.0 19.2 0.2 207 chr3L 2907791 intron Shab + chr3L 2907894 intron Shab + chr3L 2907998 intron Shab + chr3L_5_2905001 chr3L_2905001 RAL-595 557 chr3L 2927839 2927867 chr3L 2936116 2936144 Tirant 5 8273 3.0 1.0 2.0 1.7 8305 chr3L 2927839 intron Shab + chr3L 2931992 intron Shab + chr3L 2936144 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-595 558 chr3L 3028340 3028369 chr3L 3028419 3028448 4 79 1.0 0.0 0.5 2.7 108 chr3L 3028340 intergenic not near genes chr3L 3028394 intergenic not near genes chr3L 3028448 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-595 559 chr3L 3102817 3102850 chr3L 3102902 3102923 10 81 1.5 0.5 1.0 5.0 106 chr3L 3102817 intron Cht7 - chr3L 3102870 intron Cht7 - chr3L 3102923 intron Cht7 - chr3L_10_3100001 chr3L_3100001 RAL-595 560 chr3L 3141022 3141046 chr3L 3141111 3141135 7 88 3.0 2.5 2.8 1.8 113 chr3L 3141022 intron CG11537 - chr3L 3141078 intron CG11537 - chr3L 3141135 intron CG11537 - chr3L_7_3140001 chr3L_3140001 RAL-595 561 chr3L 3259672 3259833 chr3L 3259754 3259933 5 89 0.0 0.0 0.0 5.0 261 chr3L 3259672 intron ckd + chr3L 3259802 intron ckd + chr3L 3259933 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-595 562 chr3L 3281440 3281473 chr3L 3281932 3281969 Doc 17 492 1.0 4.5 2.8 4.5 529 chr3L 3281440 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_17_3280001 chr3L_3280001 RAL-595 563 chr3L 3285648 3285655 chr3L 3285731 3285738 4 83 1.5 3.5 2.5 1.1 90 chr3L 3285648 intron CG12017 + chr3L 3285693 intron CG12017 + chr3L 3285738 intron CG12017 + chr3L_4_3285001 chr3L_3285001 RAL-595 564 chr3L 3341469 3341486 chr3L 3341544 3341554 5 73 2.0 1.0 1.5 2.0 85 chr3L 3341469 intron kst + chr3L 3341512 intron kst + chr3L 3341554 intron kst + chr3L_5_3340001 chr3L_3340001 RAL-595 565 chr3L 3426613 3426642 chr3L 3426713 3426735 7 98 1.0 2.0 1.5 2.8 122 chr3L 3426613 intergenic not near genes chr3L 3426674 intergenic not near genes chr3L 3426735 intergenic not near genes chr3L_7_3425001 chr3L_3425001 RAL-595 566 chr3L 3475078 3475111 chr3L 3475522 3475552 jockey 21 444 0.5 1.0 0.8 11.7 474 chr3L 3475078 intron CG42324 + chr3L 3475315 intron CG42324 + chr3L 3475552 intron CG42324 + chr3L_21_3475001 chr3L_3475001 RAL-595 567 chr3L 3566394 3566427 chr3L 3566477 3566510 6 82 1.5 1.5 1.5 2.4 116 chr3L 3566394 intron Eip63E + chr3L 3566452 intron Eip63E + chr3L 3566510 intron Eip63E + chr3L_6_3565001 chr3L_3565001 RAL-595 568 chr3L 3601298 3601322 chr3L 3606609 3606633 copia 14 5310 5.5 5.0 5.2 2.3 5335 chr3L 3601298 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606633 intron Eip63E + chr3L_14_3600001 chr3L_3600001 RAL-595 569 chr3L 3627238 3627263 chr3L 3627343 3627368 4 105 0.0 0.0 0.0 4.0 130 chr3L 3627238 intron dar1 + chr3L 3627303 intron dar1 + chr3L 3627368 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-595 570 chr3L 3665584 3665610 chr3L 3665661 3665687 7 77 1.5 2.5 2.0 2.3 103 chr3L 3665584 intergenic not near genes chr3L 3665636 intergenic not near genes chr3L 3665687 intergenic not near genes chr3L_7_3665001 chr3L_3665001 RAL-595 571 chr3L 3736940 3736960 chr3L 3737088 3737108 6 147 1.5 2.5 2.0 2.0 168 chr3L 3736940 intron CG32264 - chr3L 3737024 intron CG32264 - chr3L 3737108 intron CG32264 - chr3L_6_3735001 chr3L_3735001 RAL-595 572 chr3L 4048415 4048445 chr3L 4048507 4048537 4 92 3.0 0.0 1.5 1.6 122 chr3L 4048415 intron CG1136 + chr3L 4048476 intron CG1136 + chr3L 4048537 intron CG1136 + chr3L_4_4045001 chr3L_4045001 RAL-595 573 chr3L 4354038 4354064 chr3L 4354123 4354149 6 84 6.0 1.5 3.8 1.2 111 chr3L 4354038 intron Cip4 - chr3L 4354094 intron Cip4 - chr3L 4354149 intron Cip4 - chr3L_6_4350001 chr3L_4350001 RAL-595 574 chr3L 4509138 4509145 chr3L 4509286 4509294 4 149 3.0 3.5 3.2 1.0 156 chr3L 4509138 intergenic not near genes chr3L 4509216 intergenic not near genes chr3L 4509294 intergenic not near genes chr3L_4_4505001 chr3L_4505001 RAL-595 575 chr3L 4519417 4519440 chr3L 4519494 4519517 7 77 3.5 0.0 1.8 2.5 100 chr3L 4519417 intron Tie - chr3L 4519467 intron Tie - chr3L 4519517 intron Tie - chr3L_7_4515001 chr3L_4515001 RAL-595 576 chr3L 4580303 4580333 chr3L 4580389 4580417 6 85 1.0 1.0 1.0 3.0 114 chr3L 4580303 intron CG42540 + chr3L 4580360 intron CG42540 + chr3L 4580417 intron CG42540 + chr3L_6_4580001 chr3L_4580001 RAL-595 577 chr3L 4725929 4725952 chr3L 4726017 4726034 4 83 0.0 3.5 1.8 1.4 105 chr3L 4725929 intron RhoGEF64C + chr3L 4725982 intron RhoGEF64C + chr3L 4726034 intron RhoGEF64C + chr3L_4_4725001 chr3L_4725001 RAL-595 578 chr3L 4797966 4797988 chr3L 4798046 4798055 7 78 3.5 2.5 3.0 1.8 89 chr3L 4797966 intergenic not near genes chr3L 4798010 intergenic not near genes chr3L 4798055 intergenic not near genes chr3L_7_4795001 chr3L_4795001 RAL-595 579 chr3L 4840406 4840418 chr3L 4840508 4840527 7 107 0.5 0.5 0.5 4.7 121 chr3L 4840406 intergenic CG13707 - chr3L 4840466 intergenic CG13707 - chr3L 4840527 intergenic CG13707 - chr3L_7_4840001 chr3L_4840001 RAL-595 580 chr3L 4858302 4858336 chr3L 4858392 4858402 6 80 5.0 4.0 4.5 1.1 100 chr3L 4858302 intergenic not near genes chr3L 4858352 intergenic not near genes chr3L 4858402 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-595 581 chr3L 4901130 4901156 chr3L 4907320 4907346 diver 4 6190 1.5 1.0 1.2 1.8 6216 chr3L 4901130 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-595 582 chr3L 5054953 5054961 chr3L 5055027 5055041 6 77 3.0 6.0 4.5 1.1 88 chr3L 5054953 intron Con - chr3L 5054997 intron Con - chr3L 5055041 intron Con - chr3L_6_5050001 chr3L_5050001 RAL-595 583 chr3L 5054965 5054970 chr3L 5055021 5055050 6 72 2.5 4.5 3.5 1.3 85 chr3L 5054965 intron Con - chr3L 5055008 intron Con - chr3L 5055050 intron Con - chr3L_6_5055001 chr3L_5055001 RAL-595 584 chr3L 5104483 5104504 chr3L 5124617 5124638 5 20134 2.5 3.5 3.0 1.2 20155 chr3L 5104483 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124638 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-595 585 chr3L 5265345 5265373 chr3L 5265453 5265457 7 104 3.5 3.0 3.2 1.7 112 chr3L 5265345 intron shep - chr3L 5265401 intron shep - chr3L 5265457 intron shep - chr3L_7_5265001 chr3L_5265001 RAL-595 586 chr3L 5488907 5488937 chr3L 5488993 5489023 11 83 3.0 0.0 1.5 4.4 116 chr3L 5488907 intergenic not near genes chr3L 5488965 intergenic not near genes chr3L 5489023 intergenic not near genes chr3L_11_5485001 chr3L_5485001 RAL-595 587 chr3L 5531192 5531224 chr3L 5531273 5531284 5 77 0.0 0.5 0.2 4.2 92 chr3L 5531192 intergenic not near genes chr3L 5531238 intergenic not near genes chr3L 5531284 intergenic not near genes chr3L_5_5530001 chr3L_5530001 RAL-595 588 chr3L 5684116 5684136 chr3L 5685322 5685342 4 1206 4.5 3.5 4.0 0.8 1226 chr3L 5684116 intron sif + chr3L 5684729 intron sif + chr3L 5685342 intron sif + chr3L_4_5680001 chr3L_5680001 RAL-595 589 chr3L 5926318 5926345 chr3L 5926508 5926535 BS 7 189 1.0 3.5 2.2 2.2 217 chr3L 5926318 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926535 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-595 590 chr3L 5937214 5937246 chr3L 5937321 5937353 9 107 1.0 1.0 1.0 4.5 139 chr3L 5937214 intron CG33993 - chr3L 5937284 intron CG33993 - chr3L 5937353 intron CG33993 - chr3L_9_5935001 chr3L_5935001 RAL-595 591 chr3L 5957576 5957597 chr3L 5957651 5957674 8 77 2.5 2.5 2.5 2.3 98 chr3L 5957576 intergenic not near genes chr3L 5957625 intergenic not near genes chr3L 5957674 intergenic not near genes chr3L_8_5955001 chr3L_5955001 RAL-595 592 chr3L 5957600 5957603 chr3L 5957649 5957680 4 70 2.0 2.0 2.0 1.3 80 chr3L 5957600 intergenic not near genes chr3L 5957640 intergenic not near genes chr3L 5957680 intergenic not near genes chr3L_4_5955001 chr3L_5955001 RAL-595 593 chr3L 5992596 5992621 chr3L 5992698 5992722 8 101 2.5 2.0 2.2 2.5 126 chr3L 5992596 intergenic not near genes chr3L 5992659 intergenic not near genes chr3L 5992722 intergenic not near genes chr3L_8_5990001 chr3L_5990001 RAL-595 594 chr3L 6001682 6001699 chr3L 6004382 6004399 jockey 5 2700 1.5 1.0 1.2 2.3 2717 chr3L 6001682 intron PVRAP + chr3L 6003040 intron PVRAP + chr3L 6004399 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-595 595 chr3L 6220914 6220946 chr3L 6230065 6230098 roo 5 9151 0.0 2.0 1.0 2.5 9184 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-595 596 chr3L 6278216 6278221 chr3L 6278292 6278297 4 76 5.5 0.0 2.8 1.1 81 chr3L 6278216 intergenic not near genes chr3L 6278256 intergenic not near genes chr3L 6278297 intergenic not near genes chr3L_4_6275001 chr3L_6275001 RAL-595 597 chr3L 6353386 6353408 chr3L 6353458 6353488 4 76 3.0 0.5 1.8 1.4 102 chr3L 6353386 intergenic not near genes chr3L 6353437 intergenic not near genes chr3L 6353488 intergenic not near genes chr3L_4_6350001 chr3L_6350001 RAL-595 598 chr3L 6442148 6442169 chr3L 6442373 6442391 4 219 11.0 22.5 16.8 0.2 243 chr3L 6442148 intron CG42747 + chr3L 6442270 intron CG42747 + chr3L 6442391 intron CG42747 + chr3L_4_6440001 chr3L_6440001 RAL-595 599 chr3L 6855933 6855954 chr3L 6860717 6860738 Doc 5 4783 2.0 2.5 2.2 1.6 4805 chr3L 6855933 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-595 600 chr3L 6887515 6887550 chr3L 6895007 6895042 roo 6 7492 2.0 0.0 1.0 3.0 7527 chr3L 6887515 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-595 601 chr3L 6934353 6934362 chr3L 6934464 6934473 4 111 0.5 3.0 1.8 1.4 120 chr3L 6934353 exon CG14820 + chr3L 6934413 intron CG14820 + chr3L 6934473 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-595 602 chr3L 6941966 6941990 chr3L 6942049 6942073 10 82 2.0 1.0 1.5 4.0 107 chr3L 6941966 intergenic not near genes chr3L 6942020 intergenic not near genes chr3L 6942073 intergenic not near genes chr3L_10_6940001 chr3L_6940001 RAL-595 603 chr3L 6974503 6974522 chr3L 6974604 6974620 8 100 0.0 6.0 3.0 2.0 117 chr3L 6974503 intron Galphai - chr3L 6974562 intron Galphai - chr3L 6974620 intron Galphai - chr3L_8_6970001 chr3L_6970001 RAL-595 604 chr3L 7057744 7057759 chr3L 7058547 7058562 5 804 4.0 1.5 2.8 1.3 818 chr3L 7057744 intergenic not near genes chr3L 7058153 intergenic not near genes chr3L 7058562 intergenic CG8641 - chr3L_5_7055001 chr3L_7055001 RAL-595 605 chr3L 7104760 7104768 chr3L 7104978 7104979 4 215 2.0 3.0 2.5 1.1 219 chr3L 7104760 intron form3 + chr3L 7104870 intron form3 + chr3L 7104979 intron form3 + chr3L_4_7100001 chr3L_7100001 RAL-595 606 chr3L 7576212 7576236 chr3L 7576299 7576324 4 85 3.0 1.5 2.2 1.2 112 chr3L 7576212 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576324 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-595 607 chr3L 7581626 7581656 chr3L 7581705 7581739 10 75 1.0 1.5 1.2 4.5 113 chr3L 7581626 intergenic not near genes chr3L 7581682 intergenic not near genes chr3L 7581739 intergenic not near genes chr3L_10_7580001 chr3L_7580001 RAL-595 608 chr3L 7886511 7886547 chr3L 7889029 7889065 Stalker4 7 2517 0.0 1.5 0.8 3.9 2554 chr3L 7886511 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-595 609 chr3L 7962583 7962616 chr3L 7962662 7962695 9 76 3.0 2.5 2.8 2.4 112 chr3L 7962583 intergenic not near genes chr3L 7962639 intergenic not near genes chr3L 7962695 intergenic not near genes chr3L_9_7960001 chr3L_7960001 RAL-595 610 chr3L 7985375 7985386 chr3L 7987704 7987712 NOF 4 2328 3.0 3.0 3.0 1.0 2337 chr3L 7985375 intron nmo + chr3L 7986544 intron nmo + chr3L 7987712 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-595 611 chr3L 8081422 8081444 chr3L 8081505 8081527 5 83 0.0 3.5 1.8 1.8 105 chr3L 8081422 intron Ect4 + chr3L 8081474 intron Ect4 + chr3L 8081527 intron Ect4 + chr3L_5_8080001 chr3L_8080001 RAL-595 612 chr3L 8295805 8295824 chr3L 8295963 8295982 5 158 0.0 3.5 1.8 1.8 177 chr3L 8295805 intergenic CG7201 - chr3L 8295894 intergenic not near genes chr3L 8295982 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-595 613 chr3L 8319459 8319485 chr3L 8319616 8319618 8 153 2.5 3.5 3.0 2.0 159 chr3L 8319459 intergenic CG43059 - chr3L 8319538 intergenic not near genes chr3L 8319618 intergenic not near genes chr3L_8_8315001 chr3L_8315001 RAL-595 614 chr3L 8481780 8481804 chr3L 8490939 8490939 roo 8 9154 2.0 4.0 3.0 2.0 9159 chr3L 8481780 intron CG43163 - chr3L 8486360 intron CG43163 - chr3L 8490939 intron CG43163 - chr3L_8_8485001 chr3L_8485001 RAL-595 615 chr3L 8498299 8498327 chr3L 8505766 8505793 blood 6 7467 1.0 1.5 1.2 2.7 7494 chr3L 8498299 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-595 616 chr3L 8551746 8551769 chr3L 8551828 8551852 6 83 0.0 2.0 1.0 3.0 106 chr3L 8551746 intron rhea + chr3L 8551799 intron rhea + chr3L 8551852 intron rhea + chr3L_6_8550001 chr3L_8550001 RAL-595 617 chr3L 8580822 8580852 chr3L 8580908 8580937 10 84 1.5 2.5 2.0 3.3 115 chr3L 8580822 intron CG43078 + chr3L 8580880 intron CG43078 + chr3L 8580937 intron CG43078 + chr3L_10_8580001 chr3L_8580001 RAL-595 618 chr3L 8582753 8582775 chr3L 8583104 8583121 6 348 0.0 1.5 0.8 3.3 368 chr3L 8582753 intron CG43078 + chr3L 8582937 intron CG43078 + chr3L 8583121 intron CG43078 + chr3L_6_8580001 chr3L_8580001 RAL-595 619 chr3L 8712886 8712897 chr3L 8713175 8713205 5 294 23.0 10.0 16.5 0.3 319 chr3L 8712886 intergenic not near genes chr3L 8713046 intergenic not near genes chr3L 8713205 intergenic not near genes chr3L_5_8710001 chr3L_8710001 RAL-595 620 chr3L 8791274 8791289 chr3L 8796694 8796708 I-element 5 5420 6.5 0.0 3.2 1.2 5434 chr3L 8791274 exon Fhos + chr3L 8793991 intron Fhos + chr3L 8796708 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-595 621 chr3L 8950549 8950579 chr3L 8950639 8950673 16 93 3.5 2.0 2.8 4.2 124 chr3L 8950549 intron,intron CG43783 -,orb2 - chr3L 8950611 intron,intron CG43783 -,orb2 - chr3L 8950673 intron,intron CG43783 -,orb2 - chr3L_16_8950001 chr3L_8950001 RAL-595 622 chr3L 9003949 9003977 chr3L 9004032 9004053 4 79 1.5 1.5 1.5 1.6 104 chr3L 9003949 intergenic not near genes chr3L 9004001 intergenic not near genes chr3L 9004053 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-595 623 chr3L 9013691 9013691 chr3L 18417066 18417066 7 9403375 16.5 12.0 14.2 0.5 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-595 624 chr3L 9076928 9076958 chr3L 9084488 9084518 412 6 7559 5.0 4.5 4.8 1.0 7590 chr3L 9076928 exon Tequila + chr3L 9080723 intron Tequila + chr3L 9084518 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-595 625 chr3L 9130559 9130582 chr3L 9134319 9134343 412 6 3760 1.0 3.0 2.0 2.0 3784 chr3L 9130559 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-595 626 chr3L 9219249 9219272 chr3L 9219912 9219938 jockey 8 667 7.0 2.0 4.5 1.5 689 chr3L 9219249 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219938 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-595 627 chr3L 9359505 9359534 chr3L 9359684 9359713 6 179 3.5 0.0 1.8 2.1 208 chr3L 9359505 3` UTR CG32039 + chr3L 9359609 3` UTR CG32039 + chr3L 9359713 3` UTR CG32039 + chr3L_6_9355001 chr3L_9355001 RAL-595 628 chr3L 9465471 9465489 chr3L 9465554 9465578 6 84 3.5 4.0 3.8 1.2 107 chr3L 9465471 intron CG44838 + chr3L 9465524 intron CG44838 + chr3L 9465578 intron CG44838 + chr3L_6_9465001 chr3L_9465001 RAL-595 629 chr3L 9533754 9533786 chr3L 9541314 9541346 412 6 7552 1.0 6.5 3.8 1.2 7592 chr3L 9533754 intergenic not near genes chr3L 9537550 intergenic not near genes chr3L 9541346 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-595 630 chr3L 9637863 9637885 chr3L 9637940 9637967 5 81 0.0 2.5 1.2 2.3 104 chr3L 9637863 intron fry - chr3L 9637915 intron fry - chr3L 9637967 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-595 631 chr3L 9929670 9929699 chr3L 9938451 9938479 roo 5 8780 0.5 0.5 0.5 3.3 8809 chr3L 9929670 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-595 632 chr3L 9946520 9946529 chr3L 9946709 9946718 5 189 1.0 1.0 1.0 2.5 198 chr3L 9946520 intron CG34356 + chr3L 9946619 intron CG34356 + chr3L 9946718 intron CG34356 + chr3L_5_9945001 chr3L_9945001 RAL-595 633 chr3L 10015568 10015601 chr3L 10015647 10015680 15 80 4.0 2.0 3.0 3.8 112 chr3L 10015568 intron dpr6 + chr3L 10015624 intron dpr6 + chr3L 10015680 intron dpr6 + chr3L_15_10015001 chr3L_10015001 RAL-595 634 chr3L 10308738 10308767 chr3L 10308815 10308844 7 77 1.5 1.0 1.2 3.2 106 chr3L 10308738 intergenic not near genes chr3L 10308791 intergenic not near genes chr3L 10308844 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-595 635 chr3L 10417568 10417598 chr3L 10417645 10417675 11 77 6.0 1.5 3.8 2.3 107 chr3L 10417568 intergenic not near genes chr3L 10417622 intergenic not near genes chr3L 10417675 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-595 636 chr3L 10658091 10658209 chr3L 10658168 10658335 4 114 0.0 0.0 0.0 4.0 244 chr3L 10658091 intron CG32066 - chr3L 10658213 intron CG32066 - chr3L 10658335 intron CG32066 - chr3L_4_10655001 chr3L_10655001 RAL-595 637 chr3L 10762856 10762864 chr3L 10762939 10762948 5 84 1.0 4.5 2.8 1.3 92 chr3L 10762856 intergenic not near genes chr3L 10762902 intergenic not near genes chr3L 10762948 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-595 638 chr3L 10999643 10999670 chr3L 10999718 10999723 4 67 4.0 0.0 2.0 1.3 80 chr3L 10999643 intron klu - chr3L 10999683 intron klu - chr3L 10999723 intron klu - chr3L_4_10995001 chr3L_10995001 RAL-595 639 chr3L 11087063 11087089 chr3L 11088846 11088878 S-element 4 1787 0.0 3.5 1.8 1.4 1815 chr3L 11087063 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-595 640 chr3L 11105299 11105325 chr3L 11107010 11107036 X-element 8 1710 2.0 3.0 2.5 2.3 1737 chr3L 11105299 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107036 exon CG32073 - chr3L_8_11105001 chr3L_11105001 RAL-595 641 chr3L 11127214 11127288 chr3L 11127289 11127365 4 76 0.0 0.0 0.0 4.0 151 chr3L 11127214 intron CG42575 + chr3L 11127290 intron CG42575 + chr3L 11127365 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-595 642 chr3L 11277474 11277486 chr3L 11278469 11278471 Rt1a 6 992 1.0 3.0 2.0 2.0 997 chr3L 11277474 intergenic not near genes chr3L 11277972 intergenic not near genes chr3L 11278471 intergenic not near genes chr3L_6_11275001 chr3L_11275001 RAL-595 643 chr3L 11290628 11290655 chr3L 11290950 11290978 7 323 0.5 1.5 1.0 3.5 350 chr3L 11290628 intron CG6175 - chr3L 11290803 intron CG6175 - chr3L 11290978 intron CG6175 - chr3L_7_11290001 chr3L_11290001 RAL-595 644 chr3L 11349019 11349041 chr3L 11349113 11349135 8 93 1.0 2.0 1.5 3.2 116 chr3L 11349019 intergenic CR45251 - chr3L 11349077 intergenic CR45251 - chr3L 11349135 intergenic CR45251 - chr3L_8_11345001 chr3L_11345001 RAL-595 645 chr3L 11442785 11442809 chr3L 11442870 11442894 4 85 3.0 0.0 1.5 1.6 109 chr3L 11442785 intergenic not near genes chr3L 11442840 intergenic not near genes chr3L 11442894 intergenic not near genes chr3L_4_11440001 chr3L_11440001 RAL-595 646 chr3L 11723082 11723114 chr3L 11727877 11727909 Doc 4 4795 2.5 0.5 1.5 1.6 4827 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-595 647 chr3L 11742963 11742990 chr3L 11743044 11743073 11 82 4.5 0.0 2.2 3.4 110 chr3L 11742963 intron CG6024 - chr3L 11743018 intron CG6024 - chr3L 11743073 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-595 648 chr3L 11850139 11850150 chr3L 11850234 11850245 6 94 4.5 0.5 2.5 1.7 106 chr3L 11850139 intergenic not near genes chr3L 11850192 intergenic CG44837 - chr3L 11850245 intergenic CG44837 - chr3L_6_11850001 chr3L_11850001 RAL-595 649 chr3L 11864554 11864579 chr3L 11865849 11865874 pogo 9 1295 5.5 1.5 3.5 2.0 1320 chr3L 11864554 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865874 intron CG44837 - chr3L_9_11865001 chr3L_11865001 RAL-595 650 chr3L 11886624 11886651 chr3L 11886860 11886876 4 233 1.0 1.0 1.0 2.0 252 chr3L 11886624 intron CG44837 - chr3L 11886750 intron CG44837 - chr3L 11886876 intron CG44837 - chr3L_4_11885001 chr3L_11885001 RAL-595 651 chr3L 11905125 11905143 chr3L 11905206 11905221 6 79 0.0 2.5 1.2 2.7 96 chr3L 11905125 intron CG44837 - chr3L 11905173 intron CG44837 - chr3L 11905221 intron CG44837 - chr3L_6_11905001 chr3L_11905001 RAL-595 652 chr3L 11940677 11940710 chr3L 11940771 11940804 4 94 5.5 6.5 6.0 0.6 127 chr3L 11940677 intergenic not near genes chr3L 11940740 intergenic not near genes chr3L 11940804 intergenic not near genes chr3L_4_11940001 chr3L_11940001 RAL-595 653 chr3L 11943505 11943517 chr3L 11943603 11943618 5 100 0.5 1.0 0.8 2.8 113 chr3L 11943505 intergenic Rpt4R +,CG5883 - chr3L 11943562 intergenic Rpt4R +,CG5883 - chr3L 11943618 intergenic CG5883 -,Rpt4R + chr3L_5_11940001 chr3L_11940001 RAL-595 654 chr3L 12052708 12052723 chr3L 12052797 12052811 4 88 1.5 2.5 2.0 1.3 103 chr3L 12052708 intron rols - chr3L 12052760 intron rols - chr3L 12052811 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-595 655 chr3L 12099304 12099330 chr3L 12099585 12099611 8 278 3.5 4.0 3.8 1.7 307 chr3L 12099304 intergenic not near genes chr3L 12099458 intergenic not near genes chr3L 12099611 intergenic not near genes chr3L_8_12095001 chr3L_12095001 RAL-595 656 chr3L 12874923 12874950 chr3L 12877215 12877242 jockey 7 2292 2.0 1.5 1.8 2.5 2319 chr3L 12874923 intergenic not near genes chr3L 12876082 intergenic not near genes chr3L 12877242 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-595 657 chr3L 12891260 12891286 chr3L 12891338 12891366 13 81 0.5 2.5 1.5 5.2 106 chr3L 12891260 intron CG43894 + chr3L 12891313 intron CG43894 + chr3L 12891366 intron CG43894 + chr3L_13_12890001 chr3L_12890001 RAL-595 658 chr3L 12894804 12894817 chr3L 12894878 12894894 6 76 4.0 5.5 4.8 1.0 90 chr3L 12894804 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-595 659 chr3L 12928954 12928981 chr3L 12929039 12929066 10 85 1.5 3.5 2.5 2.9 112 chr3L 12928954 intergenic not near genes chr3L 12929010 intergenic not near genes chr3L 12929066 intergenic not near genes chr3L_10_12925001 chr3L_12925001 RAL-595 660 chr3L 12955129 12955160 chr3L 12955205 12955236 7 76 0.0 0.5 0.2 5.8 107 chr3L 12955129 intergenic CG10752 - chr3L 12955182 intergenic not near genes chr3L 12955236 intergenic not near genes chr3L_7_12955001 chr3L_12955001 RAL-595 661 chr3L 12957785 12957817 chr3L 12962267 12962299 copia 7 4482 1.5 1.5 1.5 2.8 4514 chr3L 12957785 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_7_12960001 chr3L_12960001 RAL-595 662 chr3L 13007692 13007727 chr3L 13007771 13007806 12 79 0.5 0.0 0.2 10.0 114 chr3L 13007692 exon CG11263 + chr3L 13007749 3` UTR CG11263 + chr3L 13007806 3` UTR CG11263 + chr3L_12_13005001 chr3L_13005001 RAL-595 663 chr3L 13074038 13074069 chr3L 13074171 13074202 9 133 0.5 4.0 2.2 2.8 164 chr3L 13074038 intergenic not near genes chr3L 13074120 intergenic not near genes chr3L 13074202 intergenic not near genes chr3L_9_13070001 chr3L_13070001 RAL-595 664 chr3L 13137649 13137678 chr3L 13137736 13137764 8 84 7.5 2.0 4.8 1.4 115 chr3L 13137649 intergenic not near genes chr3L 13137706 intergenic not near genes chr3L 13137764 intergenic not near genes chr3L_8_13135001 chr3L_13135001 RAL-595 665 chr3L 13455750 13455784 chr3L 13455904 13455938 10 151 2.0 2.5 2.2 3.1 188 chr3L 13455750 intron CG10738 + chr3L 13455844 intron CG10738 + chr3L 13455938 intron CG10738 + chr3L_10_13455001 chr3L_13455001 RAL-595 666 chr3L 13525155 13525189 chr3L 13532950 13532985 roo 8 7790 2.5 8.5 5.5 1.2 7830 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-595 667 chr3L 13713495 13713497 chr3L 13714092 13714095 5 598 6.0 5.5 5.8 0.7 600 chr3L 13713495 intron bru-3 - chr3L 13713795 intron bru-3 - chr3L 13714095 intron bru-3 - chr3L_5_13710001 chr3L_13710001 RAL-595 668 chr3L 13713499 13713505 chr3L 13714084 13714096 5 591 6.0 3.0 4.5 0.9 597 chr3L 13713499 intron bru-3 - chr3L 13713798 intron bru-3 - chr3L 13714096 intron bru-3 - chr3L_5_13710001 chr3L_13710001 RAL-595 669 chr3L 13740034 13740049 chr3L 13740127 13740142 4 93 1.0 1.0 1.0 2.0 108 chr3L 13740034 intron bru-3 - chr3L 13740088 intron bru-3 - chr3L 13740142 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-595 670 chr3L 13862477 13862500 chr3L 13862679 13862706 11 205 0.5 3.5 2.0 3.7 229 chr3L 13862477 intron CG8745 - chr3L 13862592 intron CG8745 - chr3L 13862706 intron CG8745 - chr3L_11_13860001 chr3L_13860001 RAL-595 671 chr3L 13956322 13956342 chr3L 13956524 13956544 7 202 4.5 3.0 3.8 1.5 222 chr3L 13956322 intron CG32137 + chr3L 13956433 intron CG32137 + chr3L 13956544 intron CG32137 + chr3L_7_13955001 chr3L_13955001 RAL-595 672 chr3L 14076297 14076321 chr3L 14076375 14076399 9 78 0.5 4.0 2.2 2.8 102 chr3L 14076297 intron btl + chr3L 14076348 intron btl + chr3L 14076399 intron btl + chr3L_9_14075001 chr3L_14075001 RAL-595 673 chr3L 14184459 14184480 chr3L 14184560 14184585 5 104 5.5 2.0 3.8 1.0 126 chr3L 14184459 intergenic not near genes chr3L 14184522 intergenic not near genes chr3L 14184585 intergenic not near genes chr3L_5_14180001 chr3L_14180001 RAL-595 674 chr3L 14245569 14245591 chr3L 14245662 14245684 1360 7 94 2.5 3.0 2.8 1.8 115 chr3L 14245569 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-595 675 chr3L 14267374 14267396 chr3L 14271814 14271819 F-element 4 4436 1.0 0.5 0.8 2.2 4445 chr3L 14267374 intergenic not near genes chr3L 14269596 intergenic not near genes chr3L 14271819 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-595 676 chr3L 14295984 14296006 chr3L 14296469 14296492 roo 11 482 5.5 0.5 3.0 2.8 508 chr3L 14295984 intron fz + chr3L 14296238 intron fz + chr3L 14296492 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-595 677 chr3L 14296007 14296011 chr3L 14296466 14296467 roo 5 468 5.5 0.5 3.0 1.2 460 chr3L 14296007 intron fz + chr3L 14296237 intron fz + chr3L 14296467 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-595 678 chr3L 14338301 14338309 chr3L 14338397 14338403 4 96 0.0 0.5 0.2 3.3 102 chr3L 14338301 intron fz + chr3L 14338352 intron fz + chr3L 14338403 intron fz + chr3L_4_14335001 chr3L_14335001 RAL-595 679 chr3L 14425682 14425708 chr3L 14425766 14425787 7 84 1.0 0.5 0.8 3.9 105 chr3L 14425682 intron bbg - chr3L 14425734 intron bbg - chr3L 14425787 intron bbg - chr3L_7_14425001 chr3L_14425001 RAL-595 680 chr3L 14635705 14635733 chr3L 14635784 14635812 5 75 3.5 2.0 2.8 1.3 107 chr3L 14635705 intron dlp + chr3L 14635758 intron dlp + chr3L 14635812 intron dlp + chr3L_5_14635001 chr3L_14635001 RAL-595 681 chr3L 14716305 14716319 chr3L 14716689 14716702 4 384 1.5 2.0 1.8 1.4 397 chr3L 14716305 intron ome + chr3L 14716504 intron ome + chr3L 14716702 intron ome + chr3L_4_14715001 chr3L_14715001 RAL-595 682 chr3L 14721182 14721208 chr3L 14723024 14723039 Rt1c 9 1841 1.0 4.0 2.5 2.6 1857 chr3L 14721182 intron ome + chr3L 14722110 intron ome + chr3L 14723039 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-595 683 chr3L 14741141 14741154 chr3L 14741219 14741232 4 78 2.5 1.0 1.8 1.4 91 chr3L 14741141 intron ome + chr3L 14741186 intron ome + chr3L 14741232 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-595 684 chr3L 15049881 15049896 chr3L 15049958 15049973 4 77 5.0 3.0 4.0 0.8 92 chr3L 15049881 intron,exon Sytbeta -,CG18581 - chr3L 15049927 intron,exon Sytbeta -,CG18581 - chr3L 15049973 intron,exon Sytbeta -,CG18581 - chr3L_4_15045001 chr3L_15045001 RAL-595 685 chr3L 15054598 15054614 chr3L 15054673 15054690 5 75 1.0 3.0 2.0 1.7 92 chr3L 15054598 intron Sytbeta - chr3L 15054644 intron Sytbeta - chr3L 15054690 intron Sytbeta - chr3L_5_15050001 chr3L_15050001 RAL-595 686 chr3L 15070111 15070120 chr3L 15070324 15070343 4 220 10.0 20.5 15.2 0.2 232 chr3L 15070111 exon cp309 - chr3L 15070227 exon cp309 - chr3L 15070343 exon cp309 - chr3L_4_15070001 chr3L_15070001 RAL-595 687 chr3L 15085047 15085082 chr3L 15086213 15086248 1360 8 1164 3.0 2.0 2.5 2.3 1201 chr3L 15085047 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086248 intron cp309 - chr3L_8_15085001 chr3L_15085001 RAL-595 688 chr3L 15153877 15153906 chr3L 15154062 15154091 10 187 5.5 7.5 6.5 1.3 214 chr3L 15153877 3` UTR FucTA + chr3L 15153984 3` UTR FucTA + chr3L 15154091 3` UTR FucTA + chr3L_10_15150001 chr3L_15150001 RAL-595 689 chr3L 15384961 15384990 chr3L 15385085 15385092 9 124 1.0 1.0 1.0 4.5 131 chr3L 15384961 intergenic not near genes chr3L 15385026 intergenic not near genes chr3L 15385092 intergenic not near genes chr3L_9_15385001 chr3L_15385001 RAL-595 690 chr3L 15444657 15444678 chr3L 15444751 15444771 8 90 2.0 3.5 2.8 2.1 114 chr3L 15444657 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444771 intergenic not near genes chr3L_8_15440001 chr3L_15440001 RAL-595 691 chr3L 15444680 15444685 chr3L 15444748 15444778 4 87 1.5 2.5 2.0 1.3 98 chr3L 15444680 intergenic not near genes chr3L 15444729 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-595 692 chr3L 15466518 15466553 chr3L 15466602 15466637 4 84 0.5 0.0 0.2 3.3 119 chr3L 15466518 intergenic not near genes chr3L 15466578 intergenic not near genes chr3L 15466637 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-595 693 chr3L 15472654 15472658 chr3L 15472723 15472733 4 74 7.5 6.5 7.0 0.5 79 chr3L 15472654 exon CG7804 - chr3L 15472694 exon CG7804 - chr3L 15472733 exon CG7804 - chr3L_4_15470001 chr3L_15470001 RAL-595 694 chr3L 15482414 15482448 chr3L 15482505 15482540 5 92 2.5 1.5 2.0 1.7 126 chr3L 15482414 intergenic not near genes chr3L 15482477 intergenic not near genes chr3L 15482540 intergenic not near genes chr3L_5_15480001 chr3L_15480001 RAL-595 695 chr3L 15834990 15835017 chr3L 15835145 15835170 5 154 7.5 1.5 4.5 0.9 180 chr3L 15834990 intron CG18081 - chr3L 15835080 intron CG18081 - chr3L 15835170 intron CG18081 - chr3L_5_15835001 chr3L_15835001 RAL-595 696 chr3L 15883197 15883222 chr3L 15883490 15883510 5 292 1.0 1.5 1.2 2.3 313 chr3L 15883197 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883510 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-595 697 chr3L 16060481 16060510 chr3L 16060620 16060649 8 138 1.5 1.0 1.2 3.6 168 chr3L 16060481 intron Mbs + chr3L 16060565 intron Mbs + chr3L 16060649 intron Mbs + chr3L_8_16060001 chr3L_16060001 RAL-595 698 chr3L 16149200 16149230 chr3L 16149289 16149296 4 83 0.5 1.0 0.8 2.2 96 chr3L 16149200 intron CG5151 - chr3L 16149248 intron CG5151 - chr3L 16149296 intron CG5151 - chr3L_4_16145001 chr3L_16145001 RAL-595 699 chr3L 16236343 16236365 chr3L 16236458 16236480 5 115 1.5 2.0 1.8 1.8 137 chr3L 16236343 3` UTR l(3)72Dp + chr3L 16236412 3` UTR l(3)72Dp + chr3L 16236480 3` UTR l(3)72Dp + chr3L_5_16235001 chr3L_16235001 RAL-595 700 chr3L 16311438 16311460 chr3L 16311578 16311601 10 140 0.0 3.0 1.5 4.0 163 chr3L 16311438 intergenic CR32160 + chr3L 16311520 intergenic CR32160 + chr3L 16311601 intergenic CR32160 + chr3L_10_16310001 chr3L_16310001 RAL-595 701 chr3L 16443850 16443879 chr3L 16446190 16446219 Doc 6 2339 0.5 2.0 1.2 2.7 2369 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446219 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-595 702 chr3L 16457531 16457553 chr3L 16457625 16457648 4 94 1.5 1.5 1.5 1.6 117 chr3L 16457531 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457648 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-595 703 chr3L 16493985 16494012 chr3L 16494502 16494528 jockey 5 517 5.0 3.5 4.2 1.0 543 chr3L 16493985 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494256 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-595 704 chr3L 16540063 16540081 chr3L 16540151 16540169 6 88 2.0 2.0 2.0 2.0 106 chr3L 16540063 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540169 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-595 705 chr3L 16681870 16681875 chr3L 16681955 16681965 4 89 5.0 0.0 2.5 1.1 95 chr3L 16681870 intron,intron Lasp -,CG43954 - chr3L 16681918 intron,intron Lasp -,CG43954 - chr3L 16681965 intron,intron Lasp -,CG43954 - chr3L_4_16680001 chr3L_16680001 RAL-595 706 chr3L 16772503 16772512 chr3L 16772593 16772600 4 89 4.5 4.0 4.2 0.8 97 chr3L 16772503 intron Nrt + chr3L 16772552 intron Nrt + chr3L 16772600 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-595 707 chr3L 16807792 16808057 chr3L 16807871 16808133 8 78 2.0 1.5 1.8 2.9 341 chr3L 16807792 intron nudC + chr3L 16807962 intron nudC + chr3L 16808133 intron nudC + chr3L_8_16805001 chr3L_16805001 RAL-595 708 chr3L 16845030 16845038 chr3L 16845141 16845150 4 108 4.0 2.0 3.0 1.0 120 chr3L 16845030 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845150 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-595 709 chr3L 16869577 16869606 chr3L 16869658 16869689 6 83 1.5 0.0 0.8 3.3 112 chr3L 16869577 intron Lmpt + chr3L 16869633 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_6_16865001 chr3L_16865001 RAL-595 710 chr3L 16870869 16870892 chr3L 16870958 16870983 4 90 0.5 1.5 1.0 2.0 114 chr3L 16870869 intron Lmpt + chr3L 16870926 intron Lmpt + chr3L 16870983 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-595 711 chr3L 16945725 16945753 chr3L 16954878 16954898 roo 17 9148 4.5 2.5 3.5 3.8 9173 chr3L 16945725 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954898 5` UTR Nc73EF + chr3L_17_16950001 chr3L_16950001 RAL-595 712 chr3L 17164387 17164400 chr3L 17164525 17164540 5 138 0.5 0.0 0.2 4.2 153 chr3L 17164387 intron Rbp6 - chr3L 17164464 intron Rbp6 - chr3L 17164540 intron Rbp6 - chr3L_5_17160001 chr3L_17160001 RAL-595 713 chr3L 17516983 17517013 chr3L 17524541 17524571 412 10 7556 1.5 4.0 2.8 2.6 7588 chr3L 17516983 intron CG7564 + chr3L 17520777 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_10_17520001 chr3L_17520001 RAL-595 714 chr3L 17837624 17837656 chr3L 17837711 17837741 5 87 1.5 5.5 3.5 1.1 117 chr3L 17837624 exon Grd + chr3L 17837682 intron Grd + chr3L 17837741 intron Grd + chr3L_5_17835001 chr3L_17835001 RAL-595 715 chr3L 18118212 18118237 chr3L 18118290 18118315 5 78 1.5 1.5 1.5 2.0 103 chr3L 18118212 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118315 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-595 716 chr3L 18138153 18138188 chr3L 18138237 18138272 7 81 1.5 2.5 2.0 2.3 119 chr3L 18138153 intergenic not near genes chr3L 18138212 intergenic not near genes chr3L 18138272 intergenic not near genes chr3L_7_18135001 chr3L_18135001 RAL-595 717 chr3L 9013689 9013695 chr3L 18417066 18417066 6 9403374 17.0 12.0 14.5 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-595 718 chr3L 18590271 18590288 chr3L 18590353 18590370 5 79 2.0 3.0 2.5 1.4 99 chr3L 18590271 intergenic CG7271 + chr3L 18590320 intergenic CG7271 + chr3L 18590370 intergenic CG7271 + chr3L_5_18590001 chr3L_18590001 RAL-595 719 chr3L 18638574 18638603 chr3L 18638668 18638697 4 94 1.5 0.5 1.0 2.0 123 chr3L 18638574 intron MYPT-75D + chr3L 18638636 intron MYPT-75D + chr3L 18638697 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-595 720 chr3L 18721782 18721805 chr3L 18721868 18721895 5 89 1.5 2.0 1.8 1.8 113 chr3L 18721782 intergenic CG12477 - chr3L 18721838 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-595 721 chr3L 18730381 18730387 chr3L 18730561 18730567 4 180 3.5 1.0 2.2 1.2 186 chr3L 18730381 intergenic not near genes chr3L 18730474 intergenic not near genes chr3L 18730567 intergenic not near genes chr3L_4_18730001 chr3L_18730001 RAL-595 722 chr3L 18772406 18772441 chr3L 18781087 18781121 roo 7 8679 1.5 1.0 1.2 3.2 8715 chr3L 18772406 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-595 723 chr3L 18819012 18819016 chr3L 18819083 18819083 5 78 3.5 4.0 3.8 1.0 71 chr3L 18819012 intron CG14073 - chr3L 18819048 intron CG14073 - chr3L 18819083 intron CG14073 - chr3L_5_18815001 chr3L_18815001 RAL-595 724 chr3L 18832617 18832647 chr3L 18832695 18832725 5 77 2.0 7.0 4.5 0.9 108 chr3L 18832617 intron Indy - chr3L 18832671 intron Indy - chr3L 18832725 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-595 725 chr3L 18833791 18833812 chr3L 18834954 18834976 1360 6 1164 1.0 1.5 1.2 2.7 1185 chr3L 18833791 intron Indy - chr3L 18834384 intron Indy - chr3L 18834976 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-595 726 chr3L 18839735 18839767 chr3L 18839818 18839849 10 83 0.5 2.0 1.2 4.5 114 chr3L 18839735 intron Indy - chr3L 18839792 intron Indy - chr3L 18839849 intron Indy - chr3L_10_18835001 chr3L_18835001 RAL-595 727 chr3L 18861775 18861798 chr3L 18861868 18861889 5 92 1.0 4.0 2.5 1.4 114 chr3L 18861775 intergenic not near genes chr3L 18861832 intergenic not near genes chr3L 18861889 intergenic not near genes chr3L_5_18860001 chr3L_18860001 RAL-595 728 chr3L 18933094 18933117 chr3L 18933179 18933202 5 85 3.5 1.0 2.2 1.6 108 chr3L 18933094 intron CG32204 - chr3L 18933148 intron CG32204 - chr3L 18933202 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-595 729 chr3L 18941712 18941720 chr3L 18941801 18941804 5 89 7.0 2.5 4.8 0.9 92 chr3L 18941712 intron CG32204 - chr3L 18941758 intron CG32204 - chr3L 18941804 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-595 730 chr3L 18972391 18972426 chr3L 18972467 18972475 13 68 3.0 1.0 2.0 4.3 84 chr3L 18972391 intergenic not near genes chr3L 18972433 intergenic not near genes chr3L 18972475 intergenic not near genes chr3L_13_18970001 chr3L_18970001 RAL-595 731 chr3L 19008838 19008863 chr3L 19009175 19009201 jockey 5 338 2.5 2.5 2.5 1.4 363 chr3L 19008838 intron nkd - chr3L 19009020 intron nkd - chr3L 19009201 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-595 732 chr3L 19097546 19097569 chr3L 19098103 19098112 6 548 26.0 16.0 21.0 0.3 566 chr3L 19097546 exon CG10424 - chr3L 19097829 intergenic CG10424 -,CG14079 + chr3L 19098112 5` UTR CG14079 + chr3L_6_19095001 chr3L_19095001 RAL-595 733 chr3L 19115644 19115670 chr3L 19115824 19115850 BS 8 179 3.0 2.0 2.5 2.3 206 chr3L 19115644 intron CG14082 - chr3L 19115747 intron CG14082 - chr3L 19115850 intron CG14082 - chr3L_8_19115001 chr3L_19115001 RAL-595 734 chr3L 19117058 19117069 chr3L 19124505 19124516 mdg1 4 7447 5.0 0.5 2.8 1.1 7458 chr3L 19117058 intron CG14082 - chr3L 19120787 intron CG14082 - chr3L 19124516 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-595 735 chr3L 19182397 19182418 chr3L 19182477 19182499 4 79 0.0 3.0 1.5 1.6 102 chr3L 19182397 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182499 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-595 736 chr3L 19208056 19208089 chr3L 19209430 19209463 Doc 11 1374 3.5 0.5 2.0 3.7 1407 chr3L 19208056 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209463 intron fz2 - chr3L_11_19205001 chr3L_19205001 RAL-595 737 chr3L 19390723 19390759 chr3L 19390821 19390856 13 96 2.0 4.5 3.2 3.1 133 chr3L 19390723 intron CG32206 - chr3L 19390790 intron CG32206 - chr3L 19390856 intron CG32206 - chr3L_13_19390001 chr3L_19390001 RAL-595 738 chr3L 19498427 19498455 chr3L 19503655 19503681 4 5226 19.5 18.0 18.8 0.2 5254 chr3L 19498427 3` UTR CG9451 - chr3L 19501054 3` UTR CG9452 - chr3L 19503681 5` UTR CG9452 - chr3L_4_19500001 chr3L_19500001 RAL-595 739 chr3L 19703848 19703875 chr3L 19704002 19704029 8 154 1.5 1.5 1.5 3.2 181 chr3L 19703848 intron serp - chr3L 19703938 intron serp - chr3L 19704029 intron serp - chr3L_8_19700001 chr3L_19700001 RAL-595 740 chr3L 19848506 19848534 chr3L 19857696 19857725 roo 5 9190 1.0 2.0 1.5 2.0 9219 chr3L 19848506 intron Papss + chr3L 19853116 intron Papss + chr3L 19857725 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-595 741 chr3L 19933536 19933557 chr3L 19934358 19934379 5 822 1.0 4.0 2.5 1.4 843 chr3L 19933536 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934379 intergenic CR45678 + chr3L_5_19930001 chr3L_19930001 RAL-595 742 chr3L 19935447 19935466 chr3L 19937006 19937013 7 1557 1.5 0.5 1.0 3.5 1566 chr3L 19935447 intergenic not near genes chr3L 19936230 intergenic not near genes chr3L 19937013 intergenic not near genes chr3L_7_19935001 chr3L_19935001 RAL-595 743 chr3L 20257335 20257355 chr3L 20258455 20258475 pogo 6 1120 0.0 5.0 2.5 1.7 1140 chr3L 20257335 intron rdgC + chr3L 20257905 intron rdgC + chr3L 20258475 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-595 744 chr3L 20283388 20283409 chr3L 20283464 20283489 8 78 3.0 3.5 3.2 1.9 101 chr3L 20283388 intron gogo - chr3L 20283438 intron gogo - chr3L 20283489 intron gogo - chr3L_8_20280001 chr3L_20280001 RAL-595 745 chr3L 20386939 20386969 chr3L 20387041 20387071 7 102 3.0 1.0 2.0 2.3 132 chr3L 20386939 intron fbl + chr3L 20387005 intron fbl + chr3L 20387071 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-595 746 chr3L 20831484 20831491 chr3L 20831604 20831612 4 121 4.0 7.5 5.8 0.6 128 chr3L 20831484 intron Pka-R1 + chr3L 20831548 intron Pka-R1 + chr3L 20831612 intron Pka-R1 + chr3L_4_20830001 chr3L_20830001 RAL-595 747 chr3L 20917089 20917123 chr3L 20917166 20917200 9 75 2.0 0.5 1.2 4.1 111 chr3L 20917089 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917200 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-595 748 chr3L 21082217 21082238 chr3L 21082291 21082315 7 77 0.5 3.0 1.8 2.5 98 chr3L 21082217 intron ko - chr3L 21082266 intron ko - chr3L 21082315 intron ko - chr3L_7_21080001 chr3L_21080001 RAL-595 749 chr3L 21151864 21151897 chr3L 21156948 21156981 flea 4 5084 1.0 0.5 0.8 2.2 5117 chr3L 21151864 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-595 750 chr3L 21243748 21243768 chr3L 21251311 21251330 412 11 7562 0.5 3.0 1.8 3.9 7582 chr3L 21243748 intron Eip78C + chr3L 21247539 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_11_21245001 chr3L_21245001 RAL-595 751 chr3L 21498839 21498850 chr3L 21500475 21500486 1360 4 1634 5.0 2.5 3.8 0.8 1647 chr3L 21498839 intron Glg1 - chr3L 21499662 intron Glg1 - chr3L 21500486 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-595 752 chr3L 21563396 21563406 chr3L 21563746 21563755 4 350 1.0 3.0 2.0 1.3 359 chr3L 21563396 intergenic not near genes chr3L 21563576 intergenic not near genes chr3L 21563755 intergenic not near genes chr3L_4_21560001 chr3L_21560001 RAL-595 753 chr3L 21639197 21639222 chr3L 21639276 21639300 5 78 0.5 2.0 1.2 2.3 103 chr3L 21639197 intergenic CG32444 +,CG32445 + chr3L 21639248 intergenic CG32445 +,CG32444 + chr3L 21639300 intergenic CG32445 +,CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-595 754 chr3L 21749316 21749332 chr3L 21754475 21754492 Doc 7 5158 5.0 1.0 3.0 1.8 5176 chr3L 21749316 intron Syn1 - chr3L 21751904 intron Syn1 - chr3L 21754492 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-595 755 chr3L 21828941 21828974 chr3L 21829028 21829048 13 82 2.0 1.5 1.8 4.6 107 chr3L 21828941 intergenic CR43309 -,CG32448 - chr3L 21828994 intergenic CR43309 - chr3L 21829048 intergenic CR43309 - chr3L_13_21825001 chr3L_21825001 RAL-595 756 chr3L 21836726 21836758 chr3L 21836812 21836843 4 85 0.5 1.5 1.0 2.0 117 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836784 3` UTR P5CDh1 - chr3L 21836843 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-595 757 chr3L 21847426 21847442 chr3L 21847522 21847538 5 96 2.0 0.0 1.0 2.5 112 chr3L 21847426 intron mub + chr3L 21847482 intron mub + chr3L 21847538 intron mub + chr3L_5_21845001 chr3L_21845001 RAL-595 758 chr3L 21872424 21872454 chr3L 21872503 21872533 7 79 2.0 3.5 2.8 1.8 109 chr3L 21872424 intron mub + chr3L 21872478 intron mub + chr3L 21872533 intron mub + chr3L_7_21870001 chr3L_21870001 RAL-595 759 chr3L 22099676 22099698 chr3L 22105862 22105884 3S18 4 6185 3.5 0.5 2.0 1.3 6208 chr3L 22099676 intergenic not near genes chr3L 22102780 intergenic not near genes chr3L 22105884 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-595 760 chr3L 22337862 22337896 chr3L 22338705 22338713 4 836 3.5 1.5 2.5 1.1 851 chr3L 22337862 intron Ten-m - chr3L 22338288 intron Ten-m - chr3L 22338713 intron Ten-m - chr3L_4_22335001 chr3L_22335001 RAL-595 761 chr3L 22380453 22380480 chr3L 22380860 22380885 4 401 1.5 3.0 2.2 1.2 432 chr3L 22380453 intron Ten-m - chr3L 22380669 intron Ten-m - chr3L 22380885 intron Ten-m - chr3L_4_22380001 chr3L_22380001 RAL-595 762 chr3L 22395597 22395630 chr3L 22395680 22395713 4 80 2.0 4.0 3.0 1.0 116 chr3L 22395597 intron Ten-m - chr3L 22395655 intron Ten-m - chr3L 22395713 intron Ten-m - chr3L_4_22395001 chr3L_22395001 RAL-595 763 chr3L 22489078 22489111 chr3L 22489237 22489270 12 158 3.5 1.5 2.5 3.4 192 chr3L 22489078 intergenic not near genes chr3L 22489174 intergenic not near genes chr3L 22489270 intergenic not near genes chr3L_12_22485001 chr3L_22485001 RAL-595 764 chr3L 22507133 22507154 chr3L 22507216 22507240 8 82 2.0 1.5 1.8 2.9 107 chr3L 22507133 intergenic not near genes chr3L 22507186 intergenic not near genes chr3L 22507240 intergenic not near genes chr3L_8_22505001 chr3L_22505001 RAL-595 765 chr3L 22555768 22555802 chr3L 22563238 22563239 blood 6 7458 3.0 1.5 2.2 1.9 7471 chr3L 22555768 intergenic not near genes chr3L 22559504 intergenic not near genes chr3L 22563239 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-595 766 chr3L 22569577 22569597 chr3L 22569675 22569695 4 98 1.5 3.0 2.2 1.2 118 chr3L 22569577 intergenic not near genes chr3L 22569636 intergenic not near genes chr3L 22569695 intergenic not near genes chr3L_4_22565001 chr3L_22565001 RAL-595 767 chr3L 22577621 22577647 chr3L 22582404 22582435 Doc 11 4786 7.0 3.0 5.0 1.8 4814 chr3L 22577621 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 RAL-595 768 chr3L 22617194 22617221 chr3L 22624645 22624673 blood 5 7452 1.5 0.0 0.8 2.8 7479 chr3L 22617194 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-595 769 chr3L 22674430 22674463 chr3L 22674508 22674540 5 77 2.0 2.0 2.0 1.7 110 chr3L 22674430 intron CG14457 + chr3L 22674485 intron CG14457 + chr3L 22674540 intron CG14457 + chr3L_5_22670001 chr3L_22670001 RAL-595 770 chr3L 22853703 22853716 chr3L 22853781 22853802 7 85 2.5 4.0 3.2 1.7 99 chr3L 22853703 5` UTR CR43426 + chr3L 22853752 5` UTR CR43426 + chr3L 22853802 5` UTR CR43426 + chr3L_7_22850001 chr3L_22850001 RAL-595 771 chr3L 22897209 22897219 chr3L 22897291 22897302 4 83 3.5 4.0 3.8 0.8 93 chr3L 22897209 intergenic not near genes chr3L 22897256 intergenic not near genes chr3L 22897302 intergenic not near genes chr3L_4_22895001 chr3L_22895001 RAL-595 772 chr3L 22949205 22949213 chr3L 22949293 22949299 5 87 4.5 2.5 3.5 1.1 94 chr3L 22949205 intron Mes2 + chr3L 22949252 intron Mes2 + chr3L 22949299 intron Mes2 + chr3L_5_22945001 chr3L_22945001 RAL-595 773 chr3L 22989879 22989891 chr3L 22996853 22996865 297 4 6974 2.5 1.5 2.0 1.3 6986 chr3L 22989879 intergenic not near genes chr3L 22993372 intergenic not near genes chr3L 22996865 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-595 774 chr3L 23042227 23042259 chr3L 23048980 23049007 gypsy6 6 6751 5.0 4.5 4.8 1.0 6780 chr3L 23042227 intergenic not near genes chr3L 23045617 intergenic not near genes chr3L 23049007 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-595 775 chr3L 23182821 23182850 chr3L 23182897 23182926 9 75 0.5 2.5 1.5 3.6 105 chr3L 23182821 intron CG34031 + chr3L 23182874 intron CG34031 + chr3L 23182926 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-595 776 chr3L 23285632 23285655 chr3L 23286312 23286335 5 679 2.5 2.5 2.5 1.4 703 chr3L 23285632 3` UTR nAChRalpha4 + chr3L 23285984 3` UTR nAChRalpha4 + chr3L 23286335 3` UTR nAChRalpha4 + chr3L_5_23285001 chr3L_23285001 RAL-595 777 chr3L 23288277 23288290 chr3L 23288954 23288968 INE-1 8 678 5.0 2.0 3.5 1.8 691 chr3L 23288277 intergenic not near genes chr3L 23288622 intergenic not near genes chr3L 23288968 intergenic not near genes chr3L_8_23285001 chr3L_23285001 RAL-595 778 chr3L 23450098 23450134 chr3L 23450600 23450631 10 498 3.5 3.0 3.2 2.4 533 chr3L 23450098 intergenic not near genes chr3L 23450364 intergenic not near genes chr3L 23450631 intergenic not near genes chr3L_10_23450001 chr3L_23450001 RAL-595 779 chr3L 24168792 24168803 chr3L 24176120 24176120 ZAM 4 7325 8.5 2.0 5.2 0.6 7328 chr3L 24168792 intron Snap25 + chr3L 24172456 intron Snap25 + chr3L 24176120 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-595 780 chr3L 25331639 25331653 chr3L 25331730 25331744 7 89 3.0 3.5 3.2 1.7 105 chr3L 25331639 intergenic not near genes chr3L 25331692 intergenic not near genes chr3L 25331744 intergenic not near genes chr3L_7_25330001 chr3L_25330001 RAL-595 781 chr3L 25975453 25975463 chr3L 25975538 25975548 4 85 0.5 6.0 3.2 1.0 95 chr3L 25975453 intron CG40178 - chr3L 25975500 intron CG40178 - chr3L 25975548 intron CG40178 - chr3L_4_25975001 chr3L_25975001 RAL-595 782 chr3L 27365395 27365400 chr3L 27365709 27365714 4 314 6.0 0.5 3.2 1.0 319 chr3L 27365395 intron Dbp80 + chr3L 27365554 intron Dbp80 + chr3L 27365714 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-595 783 chr3L 27390689 27390696 chr3L 27390768 27390775 4 78 29.5 20.5 25.0 0.2 86 chr3L 27390689 intron Dbp80 + chr3L 27390732 intron Dbp80 + chr3L 27390775 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-595 784 chr3R 1867172 1867175 chr3R 1954892 1954909 Doc3-element 4 87734 8.0 1.5 4.8 0.7 87737 chr3R 1867172 intron CG42623 + chr3R 1911040 intron CG42623 + chr3R 1954909 intergenic not near genes chr3R_4_1910001 chr3R_1910001 RAL-595 785 chr3R 2446800 2446822 chr3R 2449049 2449071 1360 4 2249 27.0 13.0 20.0 0.2 2271 chr3R 2446800 intergenic not near genes chr3R 2447936 intergenic not near genes chr3R 2449071 intergenic not near genes chr3R_4_2445001 chr3R_2445001 RAL-595 786 chr3R 2534155 2534161 chr3R 2541721 2541726 5 7567 7.0 12.0 9.5 0.5 7571 chr3R 2534155 intergenic not near genes chr3R 2537940 intergenic not near genes chr3R 2541726 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-595 787 chr3R 4063812 4063830 chr3R 4069091 4069110 5 5279 4.0 8.0 6.0 0.7 5298 chr3R 4063812 intergenic not near genes chr3R 4066461 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-595 788 chr3R 4161537 4161559 chr3R 4161614 4161635 4 76 3.0 2.5 2.8 1.1 98 chr3R 4161537 3` UTR CG40198 - chr3R 4161586 3` UTR CG40198 - chr3R 4161635 exon CG40198 - chr3R_4_4160001 chr3R_4160001 RAL-595 789 chr3R 4408410 4408439 chr3R 4412714 4412743 Juan 6 4303 1.5 4.0 2.8 1.6 4333 chr3R 4408410 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-595 790 chr3R 4609550 4609580 chr3R 4610714 4610744 1360 7 1164 1.0 3.0 2.0 2.3 1194 chr3R 4609550 intergenic not near genes chr3R 4610147 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-595 791 chr3R 4683186 4683206 chr3R 4684945 4684962 S-element 6 1758 0.5 3.0 1.8 2.1 1776 chr3R 4683186 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684962 intron CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-595 792 chr3R 4753238 4753268 chr3R 4757541 4757571 F-element 7 4299 2.5 7.0 4.8 1.2 4333 chr3R 4753238 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-595 793 chr3R 4769161 4769191 chr3R 4769239 4769269 9 77 1.5 2.5 2.0 3.0 108 chr3R 4769161 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-595 794 chr3R 4784524 4784530 chr3R 4791397 4791403 4 6873 16.0 16.5 16.2 0.2 6879 chr3R 4784524 exon CG17387 - chr3R 4787964 exon ctrip - chr3R 4791403 exon ctrip - chr3R_4_4785001 chr3R_4785001 RAL-595 795 chr3R 4784520 4784550 chr3R 4791405 4791423 9 6875 18.0 17.0 17.5 0.5 6903 chr3R 4784520 exon CG17387 - chr3R 4787972 exon ctrip - chr3R 4791423 exon ctrip - chr3R_9_4785001 chr3R_4785001 RAL-595 796 chr3R 4887488 4887502 chr3R 4894864 4894878 rover 4 7376 3.5 5.0 4.2 0.8 7390 chr3R 4887488 intergenic not near genes chr3R 4891183 intergenic not near genes chr3R 4894878 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-595 797 chr3R 4922348 4922361 chr3R 4922427 4922437 6 78 4.0 3.5 3.8 1.2 89 chr3R 4922348 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922437 intron Cdep + chr3R_6_4920001 chr3R_4920001 RAL-595 798 chr3R 5067982 5068014 chr3R 5073499 5073531 mdg3 11 5515 1.5 2.5 2.0 3.7 5549 chr3R 5067982 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_11_5070001 chr3R_5070001 RAL-595 799 chr3R 5191366 5191383 chr3R 5191642 5191662 6 278 22.0 20.0 21.0 0.3 296 chr3R 5191366 intron cno - chr3R 5191514 intron cno - chr3R 5191662 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-595 800 chr3R 5278087 5278122 chr3R 5278168 5278202 7 81 4.5 1.0 2.8 1.8 115 chr3R 5278087 intron mtd - chr3R 5278144 intron mtd - chr3R 5278202 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-595 801 chr3R 5338395 5338424 chr3R 5343569 5343596 Rt1c 16 5174 2.0 4.0 3.0 4.0 5201 chr3R 5338395 intron mtd - chr3R 5340996 intron mtd - chr3R 5343596 intron mtd - chr3R_16_5340001 chr3R_5340001 RAL-595 802 chr3R 5367143 5367178 chr3R 5367269 5367304 12 113 0.5 2.5 1.5 4.8 161 chr3R 5367143 intron Cerk - chr3R 5367224 intron Cerk - chr3R 5367304 intron Cerk - chr3R_12_5365001 chr3R_5365001 RAL-595 803 chr3R 5385971 5386000 chr3R 5386142 5386171 6 170 2.0 3.0 2.5 1.7 200 chr3R 5385971 intron kkv - chr3R 5386071 intron kkv - chr3R 5386171 intron kkv - chr3R_6_5385001 chr3R_5385001 RAL-595 804 chr3R 5746021 5746040 chr3R 5746261 5746281 pogo 4 240 2.0 3.0 2.5 1.1 260 chr3R 5746021 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746281 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-595 805 chr3R 5772377 5772405 chr3R 5772535 5772563 5 158 0.5 1.0 0.8 2.8 186 chr3R 5772377 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772563 intron CG2082 - chr3R_5_5770001 chr3R_5770001 RAL-595 806 chr3R 5822380 5822409 chr3R 5823547 5823576 1360 7 1167 1.0 1.5 1.2 3.2 1196 chr3R 5822380 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-595 807 chr3R 5840826 5840851 chr3R 5840915 5840940 11 88 5.0 3.5 4.2 2.1 114 chr3R 5840826 intergenic CG1213 + chr3R 5840883 intergenic CG1213 + chr3R 5840940 intergenic CG1213 + chr3R_11_5840001 chr3R_5840001 RAL-595 808 chr3R 5964371 5964389 chr3R 5964476 5964493 4 104 1.0 1.5 1.2 1.8 122 chr3R 5964371 intergenic not near genes chr3R 5964432 intergenic not near genes chr3R 5964493 intergenic not near genes chr3R_4_5960001 chr3R_5960001 RAL-595 809 chr3R 6015964 6015994 chr3R 6024441 6024475 Tirant 6 8480 2.5 6.5 4.5 1.1 8511 chr3R 6015964 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-595 810 chr3R 6048449 6048477 chr3R 6048532 6048560 6 82 4.0 3.5 3.8 1.2 111 chr3R 6048449 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048560 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-595 811 chr3R 6158511 6158524 chr3R 6167093 6167107 Tirant 7 8582 2.0 2.0 2.0 2.3 8596 chr3R 6158511 intergenic not near genes chr3R 6162809 intergenic not near genes chr3R 6167107 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-595 812 chr3R 6158529 6158540 chr3R 6167091 6167123 Tirant 7 8573 1.0 2.0 1.5 2.8 8594 chr3R 6158529 intergenic not near genes chr3R 6162826 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-595 813 chr3R 6175174 6175201 chr3R 6182446 6182470 HMS-Beagle2 4 7270 1.0 3.0 2.0 1.3 7296 chr3R 6175174 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182470 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-595 814 chr3R 6226624 6226652 chr3R 6226712 6226739 5 87 2.5 1.0 1.8 1.8 115 chr3R 6226624 intergenic not near genes chr3R 6226682 intergenic not near genes chr3R 6226739 intergenic not near genes chr3R_5_6225001 chr3R_6225001 RAL-595 815 chr3R 6428815 6428826 chr3R 6428917 6428928 5 102 0.5 0.5 0.5 3.3 113 chr3R 6428815 intron gpp + chr3R 6428872 intron gpp + chr3R 6428928 intron gpp + chr3R_5_6425001 chr3R_6425001 RAL-595 816 chr3R 6543839 6543866 chr3R 6543911 6543925 12 73 2.0 2.5 2.2 3.8 86 chr3R 6543839 intron dpr11 - chr3R 6543882 intron dpr11 - chr3R 6543925 intron dpr11 - chr3R_12_6540001 chr3R_6540001 RAL-595 817 chr3R 6737505 6737524 chr3R 6739292 6739309 Doc 6 1787 1.5 2.0 1.8 2.1 1804 chr3R 6737505 intron pb - chr3R 6738407 intron pb - chr3R 6739309 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-595 818 chr3R 6918064 6918088 chr3R 6918141 6918163 9 78 0.0 2.0 1.0 4.5 99 chr3R 6918064 intron Antp - chr3R 6918114 intron Antp - chr3R 6918163 intron Antp - chr3R_9_6915001 chr3R_6915001 RAL-595 819 chr3R 7092783 7092816 chr3R 7093347 7093380 16 564 0.5 2.5 1.5 6.4 597 chr3R 7092783 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_16_7090001 chr3R_7090001 RAL-595 820 chr3R 7103288 7103311 chr3R 7103363 7103387 9 72 5.0 4.5 4.8 1.6 99 chr3R 7103288 intron Alh - chr3R 7103338 intron Alh - chr3R 7103387 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-595 821 chr3R 7105323 7105347 chr3R 7105406 7105430 14 82 1.5 2.0 1.8 5.0 107 chr3R 7105323 intron Alh - chr3R 7105376 intron Alh - chr3R 7105430 intron Alh - chr3R_14_7105001 chr3R_7105001 RAL-595 822 chr3R 7217463 7217474 chr3R 7217684 7217695 6 220 2.0 1.5 1.8 2.1 232 chr3R 7217463 intergenic CG14605 -,CG14606 - chr3R 7217579 intergenic CG14605 -,CG14606 - chr3R 7217695 3` UTR CG14605 - chr3R_6_7215001 chr3R_7215001 RAL-595 823 chr3R 7302296 7302311 chr3R 7302388 7302403 6 92 2.0 1.5 1.8 2.1 107 chr3R 7302296 intron rn - chr3R 7302350 intron rn - chr3R 7302403 intron rn - chr3R_6_7300001 chr3R_7300001 RAL-595 824 chr3R 7405725 7405747 chr3R 7405804 7405827 15 78 1.5 3.0 2.2 4.7 102 chr3R 7405725 intergenic not near genes chr3R 7405776 intergenic not near genes chr3R 7405827 intergenic not near genes chr3R_15_7405001 chr3R_7405001 RAL-595 825 chr3R 7419880 7419913 chr3R 7419978 7420011 17 95 3.0 3.5 3.2 4.0 131 chr3R 7419880 exon CG31544 + chr3R 7419946 exon CG31544 + chr3R 7420011 exon CG31544 + chr3R_17_7415001 chr3R_7415001 RAL-595 826 chr3R 7443890 7443915 chr3R 7444363 7444388 7 473 2.0 1.0 1.5 2.8 498 chr3R 7443890 intergenic not near genes chr3R 7444139 intergenic not near genes chr3R 7444388 intergenic not near genes chr3R_7_7440001 chr3R_7440001 RAL-595 827 chr3R 7639801 7639818 chr3R 7639942 7639950 5 138 0.5 2.5 1.5 2.0 149 chr3R 7639801 intergenic CG34127 - chr3R 7639876 intergenic CG34127 - chr3R 7639950 intergenic not near genes chr3R_5_7635001 chr3R_7635001 RAL-595 828 chr3R 7660788 7660817 chr3R 7660879 7660908 6 87 1.5 2.5 2.0 2.0 120 chr3R 7660788 intron Nlg1 + chr3R 7660848 intron Nlg1 + chr3R 7660908 intron Nlg1 + chr3R_6_7660001 chr3R_7660001 RAL-595 829 chr3R 7677921 7677931 chr3R 7678029 7678044 4 112 1.5 1.5 1.5 1.6 123 chr3R 7677921 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678044 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-595 830 chr3R 7682281 7682299 chr3R 7682368 7682387 8 87 1.0 8.5 4.8 1.4 106 chr3R 7682281 intron Nlg1 + chr3R 7682334 intron Nlg1 + chr3R 7682387 intron Nlg1 + chr3R_8_7680001 chr3R_7680001 RAL-595 831 chr3R 7729465 7729498 chr3R 7737402 7737436 Stalker2 4 7938 0.5 0.0 0.2 3.3 7971 chr3R 7729465 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737436 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-595 832 chr3R 7754261 7754272 chr3R 7754526 7754537 4 265 3.5 12.5 8.0 0.4 276 chr3R 7754261 intergenic not near genes chr3R 7754399 intergenic not near genes chr3R 7754537 intergenic not near genes chr3R_4_7750001 chr3R_7750001 RAL-595 833 chr3R 7857647 7857657 chr3R 7857723 7857738 5 81 1.5 1.5 1.5 2.0 91 chr3R 7857647 3` UTR CG17816 - chr3R 7857692 3` UTR CG17816 - chr3R 7857738 3` UTR CG17816 - chr3R_5_7855001 chr3R_7855001 RAL-595 834 chr3R 8040660 8040668 chr3R 8040744 8040752 4 84 5.5 0.5 3.0 1.0 92 chr3R 8040660 intergenic not near genes chr3R 8040706 intergenic not near genes chr3R 8040752 intergenic CG43060 + chr3R_4_8040001 chr3R_8040001 RAL-595 835 chr3R 8056158 8056182 chr3R 8056299 8056332 8 148 2.5 1.0 1.8 2.9 174 chr3R 8056158 intergenic CG43060 + chr3R 8056245 intergenic CG43060 + chr3R 8056332 intergenic CG43060 + chr3R_8_8055001 chr3R_8055001 RAL-595 836 chr3R 8094411 8094439 chr3R 8099715 8099743 Transpac 5 5304 1.0 0.5 0.8 2.8 5332 chr3R 8094411 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-595 837 chr3R 8207557 8207586 chr3R 8208402 8208423 F-element 7 843 3.0 3.5 3.2 1.7 866 chr3R 8207557 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208423 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-595 838 chr3R 8339246 8339247 chr3R 21907534 21907536 13 13568288 12.0 11.5 11.8 1.0 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-595 839 chr3R 8393597 8393605 chr3R 8393664 8393688 6 75 4.0 1.5 2.8 1.6 91 chr3R 8393597 intron CG45263 - chr3R 8393642 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_6_8390001 chr3R_8390001 RAL-595 840 chr3R 8403012 8403037 chr3R 8412178 8412203 roo 8 9166 2.5 6.0 4.2 1.5 9191 chr3R 8403012 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-595 841 chr3R 8475611 8475638 chr3R 8476301 8476328 10 688 1.0 0.0 0.5 6.7 717 chr3R 8475611 intron CG45263 - chr3R 8475970 intron CG45263 - chr3R 8476328 intron CG45263 - chr3R_10_8475001 chr3R_8475001 RAL-595 842 chr3R 8552371 8552400 chr3R 8552451 8552480 9 78 1.0 6.5 3.8 1.9 109 chr3R 8552371 intergenic Or85d + chr3R 8552426 intergenic Or85d + chr3R 8552480 intergenic Or85d + chr3R_9_8550001 chr3R_8550001 RAL-595 843 chr3R 8601773 8601794 chr3R 8610924 8610946 roo 6 9152 3.5 0.5 2.0 2.0 9173 chr3R 8601773 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610946 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-595 844 chr3R 8617881 8617909 chr3R 8618237 8618248 6 353 3.0 3.5 3.2 1.4 367 chr3R 8617881 intron 5-HT2B + chr3R 8618064 intron 5-HT2B + chr3R 8618248 intron 5-HT2B + chr3R_6_8615001 chr3R_8615001 RAL-595 845 chr3R 8642422 8642449 chr3R 8642498 8642524 6 74 1.5 2.0 1.8 2.1 102 chr3R 8642422 intergenic not near genes chr3R 8642473 intergenic not near genes chr3R 8642524 intergenic not near genes chr3R_6_8640001 chr3R_8640001 RAL-595 846 chr3R 8685298 8685308 chr3R 8685398 8685408 4 100 0.5 2.0 1.2 1.8 110 chr3R 8685298 intron CR44937 - chr3R 8685353 intron CR44937 - chr3R 8685408 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-595 847 chr3R 8707358 8707382 chr3R 8709799 8709823 jockey 8 2441 3.5 2.5 3.0 2.0 2465 chr3R 8707358 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-595 848 chr3R 8866207 8866208 chr3R 8866830 8866854 4 634 13.5 10.0 11.8 0.3 647 chr3R 8866207 intron pyd - chr3R 8866530 intron pyd - chr3R 8866854 intron pyd - chr3R_4_8865001 chr3R_8865001 RAL-595 849 chr3R 8918231 8918237 chr3R 8918301 8918327 4 81 1.5 1.0 1.2 1.8 96 chr3R 8918231 intron pyd - chr3R 8918279 intron pyd - chr3R 8918327 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-595 850 chr3R 9171918 9171950 chr3R 9172283 9172315 9 362 1.0 0.5 0.8 5.0 397 chr3R 9171918 intron pum - chr3R 9172116 intron pum - chr3R 9172315 intron pum - chr3R_9_9170001 chr3R_9170001 RAL-595 851 chr3R 9599614 9599650 chr3R 9600734 9600771 8 1120 1.5 2.0 1.8 2.9 1157 chr3R 9599614 intron CG8312 + chr3R 9600192 intron CG8312 + chr3R 9600771 intron CG8312 + chr3R_8_9600001 chr3R_9600001 RAL-595 852 chr3R 9601463 9601490 chr3R 9601581 9601608 6 118 1.5 0.0 0.8 3.3 145 chr3R 9601463 intron CG8312 + chr3R 9601536 intron CG8312 + chr3R 9601608 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-595 853 chr3R 9628202 9628234 chr3R 9628408 9628441 8 204 3.5 3.0 3.2 1.9 239 chr3R 9628202 exon CG8319 + chr3R 9628322 exon CG8319 + chr3R 9628441 exon CG8319 + chr3R_8_9625001 chr3R_9625001 RAL-595 854 chr3R 9644584 9644612 chr3R 9644665 9644692 4 81 1.0 0.0 0.5 2.7 108 chr3R 9644584 intron Dh44 + chr3R 9644638 intron Dh44 + chr3R 9644692 intron Dh44 + chr3R_4_9640001 chr3R_9640001 RAL-595 855 chr3R 9781166 9781196 chr3R 9787190 9787209 5 6016 21.5 11.0 16.2 0.3 6043 chr3R 9781166 3` UTR,intron CR31514 -,CG12947 + chr3R 9784188 intron MtnA - chr3R 9787209 3` UTR CG8500 + chr3R_5_9780001 chr3R_9780001 RAL-595 856 chr3R 9898788 9898814 chr3R 9898879 9898905 6 91 4.0 0.5 2.2 1.9 117 chr3R 9898788 intron Glut4EF + chr3R 9898846 intron Glut4EF + chr3R 9898905 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-595 857 chr3R 9914987 9915000 chr3R 9915084 9915096 4 96 3.5 0.0 1.8 1.4 109 chr3R 9914987 intron Glut4EF + chr3R 9915042 intron Glut4EF + chr3R 9915096 intron Glut4EF + chr3R_4_9915001 chr3R_9915001 RAL-595 858 chr3R 10073775 10073801 chr3R 10073884 10073910 4 109 1.0 1.0 1.0 2.0 135 chr3R 10073775 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-595 859 chr3R 10275558 10275584 chr3R 10275635 10275661 5 77 1.0 1.0 1.0 2.5 103 chr3R 10275558 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275661 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-595 860 chr3R 10306954 10306983 chr3R 10312213 10312242 8 5259 19.5 4.5 12.0 0.6 5288 chr3R 10306954 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312242 3` UTR Bruce - chr3R_8_10305001 chr3R_10305001 RAL-595 861 chr3R 10417481 10417493 chr3R 10417811 10417828 4 334 5.0 3.0 4.0 0.8 347 chr3R 10417481 intergenic not near genes chr3R 10417654 intergenic not near genes chr3R 10417828 intergenic not near genes chr3R_4_10415001 chr3R_10415001 RAL-595 862 chr3R 10683564 10683584 chr3R 10683664 10683697 4 106 0.5 3.5 2.0 1.3 133 chr3R 10683564 intron CR44230 + chr3R 10683630 intron CR44230 + chr3R 10683697 5` UTR CR44230 + chr3R_4_10680001 chr3R_10680001 RAL-595 863 chr3R 10727647 10727666 chr3R 10727725 10727746 6 78 3.0 2.5 2.8 1.6 99 chr3R 10727647 intergenic not near genes chr3R 10727696 intergenic not near genes chr3R 10727746 intergenic not near genes chr3R_6_10725001 chr3R_10725001 RAL-595 864 chr3R 10868591 10868609 chr3R 10868669 10868686 4 76 2.0 2.5 2.2 1.2 95 chr3R 10868591 5` UTR SelR - chr3R 10868638 5` UTR SelR - chr3R 10868686 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-595 865 chr3R 10952751 10952788 chr3R 10952834 10952871 12 83 0.0 2.0 1.0 6.0 120 chr3R 10952751 intergenic not near genes chr3R 10952811 intergenic not near genes chr3R 10952871 intergenic not near genes chr3R_12_10950001 chr3R_10950001 RAL-595 866 chr3R 11052419 11052447 chr3R 11052500 11052528 5 81 1.0 3.0 2.0 1.7 109 chr3R 11052419 intergenic not near genes chr3R 11052474 intergenic not near genes chr3R 11052528 intergenic not near genes chr3R_5_11050001 chr3R_11050001 RAL-595 867 chr3R 11090842 11090875 chr3R 11090929 11090963 8 88 2.5 1.5 2.0 2.7 121 chr3R 11090842 intergenic not near genes chr3R 11090902 intergenic not near genes chr3R 11090963 intergenic not near genes chr3R_8_11090001 chr3R_11090001 RAL-595 868 chr3R 11102325 11102354 chr3R 11102406 11102431 8 77 3.5 1.5 2.5 2.3 106 chr3R 11102325 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102431 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-595 869 chr3R 11130118 11130145 chr3R 11130207 11130210 8 85 2.5 0.0 1.2 3.6 92 chr3R 11130118 intergenic not near genes chr3R 11130164 intergenic not near genes chr3R 11130210 intergenic not near genes chr3R_8_11130001 chr3R_11130001 RAL-595 870 chr3R 11134628 11134645 chr3R 11134707 11134736 5 89 0.5 4.5 2.5 1.4 108 chr3R 11134628 intergenic not near genes chr3R 11134682 intergenic not near genes chr3R 11134736 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-595 871 chr3R 11197982 11198016 chr3R 11198081 11198115 8 98 1.0 3.0 2.0 2.7 133 chr3R 11197982 intron cu + chr3R 11198048 intron cu + chr3R 11198115 intron cu + chr3R_8_11195001 chr3R_11195001 RAL-595 872 chr3R 11379257 11379260 chr3R 11388401 11388407 roo 4 9150 2.0 4.0 3.0 1.0 9150 chr3R 11379257 intron pros + chr3R 11383832 intron pros + chr3R 11388407 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-595 873 chr3R 11398734 11398740 chr3R 11398805 11398816 4 74 3.0 1.0 2.0 1.3 82 chr3R 11398734 3` UTR pros + chr3R 11398775 3` UTR pros + chr3R 11398816 3` UTR pros + chr3R_4_11395001 chr3R_11395001 RAL-595 874 chr3R 11404945 11404969 chr3R 11405025 11405049 7 79 2.0 2.5 2.2 2.2 104 chr3R 11404945 3` UTR pros + chr3R 11404997 3` UTR pros + chr3R 11405049 3` UTR pros + chr3R_7_11400001 chr3R_11400001 RAL-595 875 chr3R 11408752 11408784 chr3R 11408846 11408877 7 93 2.0 3.5 2.8 1.8 125 chr3R 11408752 3` UTR mRpL40 + chr3R 11408814 3` UTR mgr - chr3R 11408877 3` UTR mgr - chr3R_7_11405001 chr3R_11405001 RAL-595 876 chr3R 11452088 11452102 chr3R 11452163 11452171 6 81 1.0 2.0 1.5 2.4 83 chr3R 11452088 intron CG17230 + chr3R 11452130 intron CG17230 + chr3R 11452171 intron CG17230 + chr3R_6_11450001 chr3R_11450001 RAL-595 877 chr3R 11455580 11455612 chr3R 11455706 11455738 7 126 2.5 3.0 2.8 1.8 158 chr3R 11455580 intron,intron CG17230 +,PGRP-LB - chr3R 11455659 intron,intron CG17230 +,PGRP-LB - chr3R 11455738 intron,intron CG17230 +,PGRP-LB - chr3R_7_11455001 chr3R_11455001 RAL-595 878 chr3R 11461273 11461285 chr3R 11461352 11461365 4 79 4.0 1.0 2.5 1.1 92 chr3R 11461273 intron CG17230 + chr3R 11461319 intron CG17230 + chr3R 11461365 intron CG17230 + chr3R_4_11460001 chr3R_11460001 RAL-595 879 chr3R 11476952 11476968 chr3R 11477054 11477069 10 102 1.5 1.5 1.5 4.0 117 chr3R 11476952 intergenic not near genes chr3R 11477010 intergenic not near genes chr3R 11477069 intergenic not near genes chr3R_10_11475001 chr3R_11475001 RAL-595 880 chr3R 11513849 11513869 chr3R 11513928 11513951 4 79 2.0 2.0 2.0 1.3 102 chr3R 11513849 intergenic not near genes chr3R 11513900 intergenic not near genes chr3R 11513951 intergenic not near genes chr3R_4_11510001 chr3R_11510001 RAL-595 881 chr3R 11518814 11518848 chr3R 11518904 11518939 14 89 0.5 1.5 1.0 7.0 125 chr3R 11518814 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518939 intergenic not near genes chr3R_14_11515001 chr3R_11515001 RAL-595 882 chr3R 11684379 11684397 chr3R 11684577 11684595 5 198 2.5 6.0 4.2 1.0 216 chr3R 11684379 intergenic CG6830 -,CG6834 - chr3R 11684487 intergenic CG6830 -,CG6834 - chr3R 11684595 intergenic CG6834 -,CG6830 - chr3R_5_11680001 chr3R_11680001 RAL-595 883 chr3R 11684634 11684666 chr3R 11687759 11687791 6 3124 0.5 4.0 2.2 1.9 3157 chr3R 11684634 intergenic CG6834 -,CG6830 - chr3R 11686212 exon CG6834 - chr3R 11687791 exon CG6834 - chr3R_6_11685001 chr3R_11685001 RAL-595 884 chr3R 11841061 11841094 chr3R 11846250 11846284 BS 8 5186 4.5 0.5 2.5 2.3 5223 chr3R 11841061 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-595 885 chr3R 11853435 11853473 chr3R 11853583 11853635 6 147 1.0 0.0 0.5 4.0 200 chr3R 11853435 intron CG6959 - chr3R 11853535 intron CG6959 - chr3R 11853635 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-595 886 chr3R 12080870 12080898 chr3R 12080947 12080974 6 77 3.0 4.5 3.8 1.2 104 chr3R 12080870 intron CG14741 - chr3R 12080922 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-595 887 chr3R 12214354 12214366 chr3R 12214431 12214455 9 86 4.0 1.5 2.8 2.4 101 chr3R 12214354 3` UTR CG4848 - chr3R 12214404 3` UTR CG4848 - chr3R 12214455 3` UTR CG4848 - chr3R_9_12210001 chr3R_12210001 RAL-595 888 chr3R 12247148 12247167 chr3R 12247233 12247252 9 83 3.5 1.5 2.5 2.6 104 chr3R 12247148 intergenic not near genes chr3R 12247200 intergenic not near genes chr3R 12247252 intergenic not near genes chr3R_9_12245001 chr3R_12245001 RAL-595 889 chr3R 12299815 12299838 chr3R 12299898 12299927 4 89 2.0 1.0 1.5 1.6 112 chr3R 12299815 intron svp + chr3R 12299871 intron svp + chr3R 12299927 intron svp + chr3R_4_12295001 chr3R_12295001 RAL-595 890 chr3R 12314240 12314259 chr3R 12314339 12314373 6 110 4.5 4.5 4.5 1.1 133 chr3R 12314240 intergenic not near genes chr3R 12314306 intergenic not near genes chr3R 12314373 intergenic not near genes chr3R_6_12310001 chr3R_12310001 RAL-595 891 chr3R 12436454 12436483 chr3R 12436541 12436570 9 84 5.0 1.0 3.0 2.2 116 chr3R 12436454 exon Desat2 + chr3R 12436512 exon Desat2 + chr3R 12436570 exon Desat2 + chr3R_9_12435001 chr3R_12435001 RAL-595 892 chr3R 12520694 12520717 chr3R 12520782 12520805 7 85 3.5 4.5 4.0 1.4 111 chr3R 12520694 intron Octbeta3R - chr3R 12520750 intron Octbeta3R - chr3R 12520805 intron Octbeta3R - chr3R_7_12520001 chr3R_12520001 RAL-595 893 chr3R 12520718 12520722 chr3R 12520776 12520781 4 72 2.5 4.0 3.2 1.0 63 chr3R 12520718 intron Octbeta3R - chr3R 12520750 intron Octbeta3R - chr3R 12520781 intron Octbeta3R - chr3R_4_12520001 chr3R_12520001 RAL-595 894 chr3R 12628615 12628635 chr3R 12628698 12628718 4 83 4.0 4.0 4.0 0.8 103 chr3R 12628615 intron Snx3 + chr3R 12628666 intron Snx3 + chr3R 12628718 intron Snx3 + chr3R_4_12625001 chr3R_12625001 RAL-595 895 chr3R 12733478 12733494 chr3R 12733551 12733571 6 76 2.0 1.0 1.5 2.4 93 chr3R 12733478 intergenic not near genes chr3R 12733524 intergenic not near genes chr3R 12733571 intergenic not near genes chr3R_6_12730001 chr3R_12730001 RAL-595 896 chr3R 12787940 12787948 chr3R 12788022 12788031 4 83 0.5 0.0 0.2 3.3 91 chr3R 12787940 intergenic not near genes chr3R 12787986 intergenic not near genes chr3R 12788031 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-595 897 chr3R 13075362 13075382 chr3R 13075443 13075463 5 81 2.0 0.0 1.0 2.5 101 chr3R 13075362 intron sim + chr3R 13075412 intron sim + chr3R 13075463 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-595 898 chr3R 13120772 13120795 chr3R 13120848 13120870 5 73 5.0 3.0 4.0 1.0 98 chr3R 13120772 intron timeout + chr3R 13120821 intron timeout + chr3R 13120870 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-595 899 chr3R 13135829 13135859 chr3R 13138004 13138034 pogo 6 2175 1.5 1.5 1.5 2.4 2205 chr3R 13135829 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138034 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-595 900 chr3R 13143040 13143066 chr3R 13148616 13148641 mdg3 11 5572 2.0 5.5 3.8 2.3 5601 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13145001 chr3R_13145001 RAL-595 901 chr3R 13205412 13205437 chr3R 13205492 13205518 5 76 2.0 3.0 2.5 1.4 106 chr3R 13205412 intergenic not near genes chr3R 13205465 intergenic not near genes chr3R 13205518 intergenic not near genes chr3R_5_13205001 chr3R_13205001 RAL-595 902 chr3R 13206668 13206679 chr3R 13206905 13206916 6 236 1.5 3.0 2.2 1.9 248 chr3R 13206668 intergenic not near genes chr3R 13206792 intergenic not near genes chr3R 13206916 intergenic not near genes chr3R_6_13205001 chr3R_13205001 RAL-595 903 chr3R 13274213 13274249 chr3R 13274292 13274328 14 78 5.0 3.5 4.2 2.7 115 chr3R 13274213 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274328 intergenic not near genes chr3R_14_13270001 chr3R_13270001 RAL-595 904 chr3R 13276995 13277011 chr3R 13277083 13277099 8 89 2.0 3.0 2.5 2.3 104 chr3R 13276995 intergenic not near genes chr3R 13277047 intergenic not near genes chr3R 13277099 intergenic not near genes chr3R_8_13275001 chr3R_13275001 RAL-595 905 chr3R 13672945 13672963 chr3R 13673023 13673041 6 77 3.5 1.5 2.5 1.7 96 chr3R 13672945 intron Task6 - chr3R 13672993 intron Task6 - chr3R 13673041 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-595 906 chr3R 13782059 13782087 chr3R 13782140 13782168 4 80 1.0 1.0 1.0 2.0 109 chr3R 13782059 exon CG9286 + chr3R 13782114 intergenic CG9286 +,Dip-B + chr3R 13782168 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-595 907 chr3R 13801333 13801360 chr3R 13801404 13801413 4 66 2.0 0.5 1.2 1.8 80 chr3R 13801333 intergenic not near genes chr3R 13801373 intergenic not near genes chr3R 13801413 intergenic not near genes chr3R_4_13800001 chr3R_13800001 RAL-595 908 chr3R 13975382 13975406 chr3R 13975461 13975486 4 79 1.0 2.5 1.8 1.4 104 chr3R 13975382 intron rdx - chr3R 13975434 intron rdx - chr3R 13975486 intron rdx - chr3R_4_13975001 chr3R_13975001 RAL-595 909 chr3R 14118487 14118501 chr3R 14118572 14118591 4 89 5.0 3.5 4.2 0.8 104 chr3R 14118487 intergenic Kif19A - chr3R 14118539 intergenic Kif19A - chr3R 14118591 intergenic Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-595 910 chr3R 14174955 14174993 chr3R 14175042 14175079 11 85 2.0 1.0 1.5 4.4 124 chr3R 14174955 3` UTR Dop1R1 - chr3R 14175017 3` UTR Dop1R1 - chr3R 14175079 3` UTR Dop1R1 - chr3R_11_14175001 chr3R_14175001 RAL-595 911 chr3R 14194432 14194460 chr3R 14203580 14203608 roo 4 9148 3.0 0.0 1.5 1.6 9176 chr3R 14194432 intron Dop1R1 - chr3R 14199020 intron Dop1R1 - chr3R 14203608 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-595 912 chr3R 14208534 14208564 chr3R 14208669 14208697 7 133 3.0 5.0 4.0 1.4 163 chr3R 14208534 intron Dop1R1 - chr3R 14208616 intron Dop1R1 - chr3R 14208697 intron Dop1R1 - chr3R_7_14205001 chr3R_14205001 RAL-595 913 chr3R 14246396 14246416 chr3R 14247891 14247912 jockey 7 1496 4.0 2.5 3.2 1.7 1516 chr3R 14246396 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247912 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-595 914 chr3R 14548574 14548606 chr3R 14548660 14548694 6 84 1.5 2.0 1.8 2.1 120 chr3R 14548574 intron Pde6 - chr3R 14548634 intron Pde6 - chr3R 14548694 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-595 915 chr3R 14560901 14560925 chr3R 14560995 14561018 7 93 0.5 2.5 1.5 2.8 117 chr3R 14560901 intergenic CG14850 + chr3R 14560960 5` UTR CG14850 + chr3R 14561018 exon CG14850 + chr3R_7_14560001 chr3R_14560001 RAL-595 916 chr3R 14577959 14577969 chr3R 14578075 14578085 7 116 4.0 0.5 2.2 2.2 126 chr3R 14577959 intron stumps + chr3R 14578022 intron stumps + chr3R 14578085 intron stumps + chr3R_7_14575001 chr3R_14575001 RAL-595 917 chr3R 14704386 14704419 chr3R 14704463 14704495 7 76 1.5 6.5 4.0 1.4 109 chr3R 14704386 intron kibra - chr3R 14704440 intron kibra - chr3R 14704495 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-595 918 chr3R 14812211 14812243 chr3R 14812302 14812324 9 89 6.0 4.5 5.2 1.5 113 chr3R 14812211 intron btsz - chr3R 14812268 intron btsz - chr3R 14812324 intron btsz - chr3R_9_14810001 chr3R_14810001 RAL-595 919 chr3R 15058620 15058640 chr3R 15058699 15058719 12 78 4.5 3.5 4.0 2.4 99 chr3R 15058620 intron dpr9 - chr3R 15058670 intron dpr9 - chr3R 15058719 intron dpr9 - chr3R_12_15055001 chr3R_15055001 RAL-595 920 chr3R 15132065 15132074 chr3R 15135125 15135134 Juan 6 3060 4.0 12.5 8.2 0.7 3069 chr3R 15132065 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135134 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-595 921 chr3R 15130879 15130884 chr3R 15141240 15141245 4 10361 13.5 17.5 15.5 0.2 10366 chr3R 15130879 intron CG42788 - chr3R 15136062 exon CG6912 - chr3R 15141245 exon CG3987 + chr3R_4_15135001 chr3R_15135001 RAL-595 922 chr3R 15184538 15184563 chr3R 15184620 15184645 15 82 3.0 5.0 4.0 3.0 107 chr3R 15184538 intron Gyc88E + chr3R 15184592 intron Gyc88E + chr3R 15184645 intron Gyc88E + chr3R_15_15180001 chr3R_15180001 RAL-595 923 chr3R 15407882 15407896 chr3R 15408097 15408112 5 213 1.5 3.5 2.5 1.4 230 chr3R 15407882 intergenic not near genes chr3R 15407997 intergenic not near genes chr3R 15408112 intergenic not near genes chr3R_5_15405001 chr3R_15405001 RAL-595 924 chr3R 15463902 15463927 chr3R 15463993 15464018 7 88 2.5 2.5 2.5 2.0 116 chr3R 15463902 intron AdamTS-A - chr3R 15463960 intron AdamTS-A - chr3R 15464018 intron AdamTS-A - chr3R_7_15460001 chr3R_15460001 RAL-595 925 chr3R 15571247 15571480 chr3R 15571353 15571571 7 101 4.5 1.0 2.8 1.8 324 chr3R 15571247 intergenic not near genes chr3R 15571409 intergenic not near genes chr3R 15571571 intergenic not near genes chr3R_7_15570001 chr3R_15570001 RAL-595 926 chr3R 15601172 15601188 chr3R 15608692 15608710 412 6 7521 5.5 2.5 4.0 1.2 7538 chr3R 15601172 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608710 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-595 927 chr3R 15639338 15639366 chr3R 15639623 15639650 6 284 3.0 2.5 2.8 1.6 312 chr3R 15639338 intergenic not near genes chr3R 15639494 intergenic not near genes chr3R 15639650 intergenic not near genes chr3R_6_15635001 chr3R_15635001 RAL-595 928 chr3R 15691183 15691330 chr3R 15691288 15691417 6 91 0.5 0.5 0.5 4.0 234 chr3R 15691183 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691417 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-595 929 chr3R 16048863 16048883 chr3R 16048945 16048973 9 83 2.0 5.5 3.8 1.9 110 chr3R 16048863 intron ird5 - chr3R 16048918 intron ird5 - chr3R 16048973 intron ird5 - chr3R_9_16045001 chr3R_16045001 RAL-595 930 chr3R 16073451 16073465 chr3R 16073555 16073569 5 104 2.0 1.5 1.8 1.8 118 chr3R 16073451 intron Mhcl - chr3R 16073510 intron Mhcl - chr3R 16073569 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-595 931 chr3R 16197575 16197603 chr3R 16197656 16197684 6 78 0.5 0.5 0.5 4.0 109 chr3R 16197575 3` UTR sra + chr3R 16197630 intergenic sra +,CG6126 - chr3R 16197684 intergenic sra +,CG6126 - chr3R_6_16195001 chr3R_16195001 RAL-595 932 chr3R 16464515 16464540 chr3R 16464703 16464728 4 187 2.0 3.0 2.5 1.1 213 chr3R 16464515 exon CG42232 - chr3R 16464622 exon CG42232 - chr3R 16464728 exon CG42232 - chr3R_4_16460001 chr3R_16460001 RAL-595 933 chr3R 16578163 16578169 chr3R 16578248 16578255 4 86 1.5 2.0 1.8 1.4 92 chr3R 16578163 intron Scp2 - chr3R 16578209 intron Scp2 - chr3R 16578255 intron Scp2 - chr3R_4_16575001 chr3R_16575001 RAL-595 934 chr3R 16756323 16756350 chr3R 16762512 16762539 diver 12 6189 1.5 1.5 1.5 4.8 6216 chr3R 16756323 intron bxd - chr3R 16759431 intron bxd - chr3R 16762539 intron bxd - chr3R_12_16755001 chr3R_16755001 RAL-595 935 chr3R 17024409 17024430 chr3R 17024663 17024694 4 261 4.0 2.5 3.2 1.0 285 chr3R 17024409 intron Pxd + chr3R 17024552 intron Pxd + chr3R 17024694 intron Pxd + chr3R_4_17020001 chr3R_17020001 RAL-595 936 chr3R 17121524 17121543 chr3R 17121719 17121738 4 195 1.5 1.0 1.2 1.8 214 chr3R 17121524 intron cher - chr3R 17121631 intron,exon cher -,CG42779 + chr3R 17121738 intron,exon cher -,CG42779 + chr3R_4_17120001 chr3R_17120001 RAL-595 937 chr3R 17256106 17256133 chr3R 17256204 17256208 5 91 4.0 5.0 4.5 0.9 102 chr3R 17256106 intron beat-IIb - chr3R 17256157 intron beat-IIb - chr3R 17256208 intron beat-IIb - chr3R_5_17255001 chr3R_17255001 RAL-595 938 chr3R 17346703 17346717 chr3R 17348266 17348280 F-element 5 1563 0.5 1.5 1.0 2.5 1577 chr3R 17346703 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-595 939 chr3R 17348726 17348753 chr3R 17348815 17348835 24 87 4.0 3.0 3.5 5.3 109 chr3R 17348726 intron beat-IIa - chr3R 17348780 intron beat-IIa - chr3R 17348835 intron beat-IIa - chr3R_24_17345001 chr3R_17345001 RAL-595 940 chr3R 17363951 17363968 chr3R 17364470 17364504 11 531 2.0 4.0 3.0 2.8 553 chr3R 17363951 intron beat-IIa - chr3R 17364228 intron beat-IIa - chr3R 17364504 intron beat-IIa - chr3R_11_17360001 chr3R_17360001 RAL-595 941 chr3R 17382029 17382049 chr3R 17382126 17382146 9 95 2.5 2.0 2.2 2.8 117 chr3R 17382029 intron,intron Brf -,lute + chr3R 17382088 intron,intron Brf -,lute + chr3R 17382146 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R_9_17380001 chr3R_17380001 RAL-595 942 chr3R 17461197 17461232 chr3R 17461279 17461312 5 82 1.5 0.5 1.0 2.5 115 chr3R 17461197 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-595 943 chr3R 17498855 17498880 chr3R 17498997 17499022 5 142 0.5 3.0 1.8 1.8 167 chr3R 17498855 intron Dscam3 - chr3R 17498938 intron Dscam3 - chr3R 17499022 intron Dscam3 - chr3R_5_17495001 chr3R_17495001 RAL-595 944 chr3R 17521579 17521588 chr3R 17521718 17521745 9 154 1.0 3.5 2.2 2.8 166 chr3R 17521579 intergenic not near genes chr3R 17521662 intergenic not near genes chr3R 17521745 intergenic not near genes chr3R_9_17520001 chr3R_17520001 RAL-595 945 chr3R 17531906 17531911 chr3R 17531982 17531988 5 77 0.5 5.5 3.0 1.2 82 chr3R 17531906 intergenic CG5823 - chr3R 17531947 intergenic CG5823 - chr3R 17531988 intergenic CG5823 - chr3R_5_17530001 chr3R_17530001 RAL-595 946 chr3R 17845219 17845219 chr3R 17845262 17845279 4 53 1.5 2.5 2.0 1.3 60 chr3R 17845219 intron tinc + chr3R 17845249 intron tinc + chr3R 17845279 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-595 947 chr3R 17925857 17925888 chr3R 17927324 17927328 hobo 15 1464 7.0 7.5 7.2 1.8 1471 chr3R 17925857 intron cpo + chr3R 17926592 intron cpo + chr3R 17927328 intron cpo + chr3R_15_17925001 chr3R_17925001 RAL-595 948 chr3R 18041763 18041778 chr3R 18041840 18041855 4 74 0.0 0.5 0.2 3.3 92 chr3R 18041763 intergenic not near genes chr3R 18041809 intergenic not near genes chr3R 18041855 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-595 949 chr3R 18235212 18235243 chr3R 18235388 18235419 5 176 1.0 0.0 0.5 3.3 207 chr3R 18235212 intergenic not near genes chr3R 18235316 intergenic not near genes chr3R 18235419 intergenic not near genes chr3R_5_18235001 chr3R_18235001 RAL-595 950 chr3R 18501602 18501626 chr3R 18501683 18501707 8 81 0.5 1.5 1.0 4.0 105 chr3R 18501602 intron fru - chr3R 18501654 intron fru - chr3R 18501707 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-595 951 chr3R 18554811 18554839 chr3R 18554891 18554894 5 76 2.5 1.0 1.8 1.8 83 chr3R 18554811 intergenic not near genes chr3R 18554852 intergenic not near genes chr3R 18554894 intergenic not near genes chr3R_5_18550001 chr3R_18550001 RAL-595 952 chr3R 18606518 18606529 chr3R 18610750 18610761 F-element 5 4232 4.0 0.5 2.2 1.6 4243 chr3R 18606518 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610761 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-595 953 chr3R 18781705 18781717 chr3R 18781769 18781793 5 73 2.0 2.0 2.0 1.7 88 chr3R 18781705 intron CG7720 - chr3R 18781749 intron CG7720 - chr3R 18781793 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-595 954 chr3R 18812077 18812100 chr3R 18812155 18812178 8 78 2.5 3.5 3.0 2.0 101 chr3R 18812077 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812178 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-595 955 chr3R 19367574 19367596 chr3R 19367679 19367701 4 105 1.0 1.5 1.2 1.8 127 chr3R 19367574 intergenic not near genes chr3R 19367638 intergenic not near genes chr3R 19367701 intergenic not near genes chr3R_4_19365001 chr3R_19365001 RAL-595 956 chr3R 19453448 19453463 chr3R 19453550 19453556 4 100 2.0 0.5 1.2 1.8 108 chr3R 19453448 intron CG31221 + chr3R 19453502 intron CG31221 + chr3R 19453556 intron CG31221 + chr3R_4_19450001 chr3R_19450001 RAL-595 957 chr3R 19585224 19585259 chr3R 19585300 19585335 12 75 0.0 2.5 1.2 5.5 111 chr3R 19585224 intron Dys + chr3R 19585280 intron Dys + chr3R 19585335 intron Dys + chr3R_12_19585001 chr3R_19585001 RAL-595 958 chr3R 19702321 19702354 chr3R 19702403 19702436 4 82 1.0 0.5 0.8 2.2 115 chr3R 19702321 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702436 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-595 959 chr3R 19716215 19716246 chr3R 19716291 19716323 4 77 0.5 0.5 0.5 2.7 108 chr3R 19716215 intergenic CG34286 - chr3R 19716269 intergenic CG34286 - chr3R 19716323 intergenic CG34286 - chr3R_4_19715001 chr3R_19715001 RAL-595 960 chr3R 19872775 19872801 chr3R 19872980 19873006 11 205 3.0 2.0 2.5 3.1 231 chr3R 19872775 intron CG4562 - chr3R 19872890 intron CG4562 - chr3R 19873006 intron CG4562 - chr3R_11_19870001 chr3R_19870001 RAL-595 961 chr3R 19943477 19943506 chr3R 19943575 19943604 6 98 1.5 1.0 1.2 2.7 127 chr3R 19943477 intron Hs6st - chr3R 19943540 intron Hs6st - chr3R 19943604 intron Hs6st - chr3R_6_19940001 chr3R_19940001 RAL-595 962 chr3R 19957276 19957299 chr3R 19957344 19957375 12 72 3.0 3.5 3.2 2.9 99 chr3R 19957276 intron Hs6st - chr3R 19957326 intron Hs6st - chr3R 19957375 intron Hs6st - chr3R_12_19955001 chr3R_19955001 RAL-595 963 chr3R 20041126 20041146 chr3R 20041228 20041248 6 102 2.5 3.0 2.8 1.6 122 chr3R 20041126 intron CG17193 - chr3R 20041187 intron CG17193 - chr3R 20041248 intron CG17193 - chr3R_6_20040001 chr3R_20040001 RAL-595 964 chr3R 20060640 20060649 chr3R 20060723 20060732 5 82 4.5 2.0 3.2 1.2 92 chr3R 20060640 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060732 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-595 965 chr3R 20332843 20332858 chr3R 20333166 20333183 4 324 0.5 1.5 1.0 2.0 340 chr3R 20332843 intergenic not near genes chr3R 20333013 intergenic not near genes chr3R 20333183 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-595 966 chr3R 20492112 20492133 chr3R 20492208 20492229 8 96 4.5 2.5 3.5 1.8 117 chr3R 20492112 intergenic not near genes chr3R 20492170 intergenic not near genes chr3R 20492229 intergenic not near genes chr3R_8_20490001 chr3R_20490001 RAL-595 967 chr3R 20585939 20585965 chr3R 20586024 20586050 4 84 0.0 0.0 0.0 4.0 111 chr3R 20585939 intergenic CG16953 -,Sep2 - chr3R 20585994 intergenic Sep2 -,CG16953 - chr3R 20586050 intergenic Sep2 -,CG16953 - chr3R_4_20585001 chr3R_20585001 RAL-595 968 chr3R 20686976 20686988 chr3R 20687411 20687423 5 434 1.5 1.0 1.2 2.3 447 chr3R 20686976 intergenic not near genes chr3R 20687200 intergenic not near genes chr3R 20687423 intergenic not near genes chr3R_5_20685001 chr3R_20685001 RAL-595 969 chr3R 20735010 20735046 chr3R 20735096 20735126 8 82 4.0 5.0 4.5 1.5 116 chr3R 20735010 intergenic not near genes chr3R 20735068 intergenic not near genes chr3R 20735126 intergenic cdc2c + chr3R_8_20735001 chr3R_20735001 RAL-595 970 chr3R 20771703 20771725 chr3R 20771784 20771801 6 80 0.0 0.5 0.2 5.0 98 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771801 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-595 971 chr3R 20778990 20779023 chr3R 20779082 20779115 7 92 1.5 1.5 1.5 2.8 125 chr3R 20778990 intron Syp + chr3R 20779052 intron Syp + chr3R 20779115 intron Syp + chr3R_7_20775001 chr3R_20775001 RAL-595 972 chr3R 20968534 20968556 chr3R 20968637 20968659 4 100 3.0 1.0 2.0 1.3 125 chr3R 20968534 intron Atpalpha + chr3R 20968596 intron Atpalpha + chr3R 20968659 intron Atpalpha + chr3R_4_20965001 chr3R_20965001 RAL-595 973 chr3R 20990733 20990748 chr3R 20990815 20990826 5 81 1.0 0.5 0.8 2.8 93 chr3R 20990733 intron Calx + chr3R 20990780 intron Calx + chr3R 20990826 intron Calx + chr3R_5_20990001 chr3R_20990001 RAL-595 974 chr3R 21141674 21141706 chr3R 21150155 21150186 Tirant 9 8474 2.0 3.5 2.8 2.4 8512 chr3R 21141674 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-595 975 chr3R 21150811 21150824 chr3R 21150945 21150958 4 134 0.5 0.5 0.5 2.7 147 chr3R 21150811 intron SNF4Agamma + chr3R 21150884 intron SNF4Agamma + chr3R 21150958 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-595 976 chr3R 21163257 21163276 chr3R 21163335 21163354 5 78 0.5 3.5 2.0 1.7 97 chr3R 21163257 intron SNF4Agamma + chr3R 21163306 intron SNF4Agamma + chr3R 21163354 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-595 977 chr3R 21285947 21285972 chr3R 21286025 21286035 5 73 0.0 2.5 1.2 2.3 88 chr3R 21285947 intron SIFaR - chr3R 21285991 intron SIFaR - chr3R 21286035 intron SIFaR - chr3R_5_21285001 chr3R_21285001 RAL-595 978 chr3R 21494681 21494691 chr3R 21494761 21494771 4 80 3.0 1.5 2.2 1.2 90 chr3R 21494681 intergenic not near genes chr3R 21494726 intergenic not near genes chr3R 21494771 intergenic not near genes chr3R_4_21490001 chr3R_21490001 RAL-595 979 chr3R 21733699 21733711 chr3R 21733823 21733835 5 123 3.0 4.5 3.8 1.0 136 chr3R 21733699 intergenic not near genes chr3R 21733767 intergenic not near genes chr3R 21733835 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-595 980 chr3R 21761129 21761155 chr3R 21768514 21768547 mdg1 18 7390 3.0 3.5 3.2 4.3 7418 chr3R 21761129 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768547 exon CG42335 + chr3R_18_21760001 chr3R_21760001 RAL-595 981 chr3R 21907534 21907534 chr3R 28831801 28831802 7 6924268 10.5 13.5 12.0 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_7_25365001 chr3R_25365001 RAL-595 982 chr3R 21907535 21907535 chr3R 28831801 28831802 16 6924266 10.5 13.5 12.0 1.2 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-595 983 chr3R 21907536 21907536 chr3R 28831801 28831802 6 6924266 11.0 13.5 12.2 0.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-595 984 chr3R 21985243 21985259 chr3R 21985346 21985363 4 103 1.5 1.5 1.5 1.6 120 chr3R 21985243 intron Eip93F + chr3R 21985303 intron Eip93F + chr3R 21985363 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-595 985 chr3R 22234078 22234082 chr3R 27717216 27717216 4 5483136 6.0 2.0 4.0 0.8 5483138 chr3R 22234078 intron SKIP + chr3R 24975647 intergenic not near genes chr3R 27717216 intergenic not near genes chr3R_4_24975001 chr3R_24975001 RAL-595 986 chr3R 22357857 22357891 chr3R 22358263 22358297 13 404 3.5 2.0 2.8 3.4 440 chr3R 22357857 intron Sar1 + chr3R 22358077 intron Sar1 + chr3R 22358297 intron Sar1 + chr3R_13_22355001 chr3R_22355001 RAL-595 987 chr3R 22566339 22566349 chr3R 22566427 22566451 6 99 0.5 0.5 0.5 4.0 112 chr3R 22566339 intergenic not near genes chr3R 22566395 intergenic not near genes chr3R 22566451 intergenic not near genes chr3R_6_22565001 chr3R_22565001 RAL-595 988 chr3R 22769089 22769126 chr3R 22769166 22769198 6 76 2.0 2.0 2.0 2.0 109 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_6_22765001 chr3R_22765001 RAL-595 989 chr3R 22797913 22797935 chr3R 22798009 22798030 8 96 1.0 1.0 1.0 4.0 117 chr3R 22797913 intergenic not near genes chr3R 22797972 intergenic not near genes chr3R 22798030 intergenic not near genes chr3R_8_22795001 chr3R_22795001 RAL-595 990 chr3R 22846790 22846822 chr3R 22847011 22847041 6 219 2.0 1.5 1.8 2.1 251 chr3R 22846790 intergenic CG4704 - chr3R 22846916 intergenic not near genes chr3R 22847041 intergenic not near genes chr3R_6_22845001 chr3R_22845001 RAL-595 991 chr3R 22871431 22871458 chr3R 22871564 22871591 6 132 0.5 0.0 0.2 5.0 160 chr3R 22871431 intergenic not near genes chr3R 22871511 intergenic not near genes chr3R 22871591 intergenic not near genes chr3R_6_22870001 chr3R_22870001 RAL-595 992 chr3R 22881195 22881226 chr3R 22884900 22884932 Doc 9 3705 0.0 3.5 1.8 3.2 3737 chr3R 22881195 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884932 intergenic not near genes chr3R_9_22880001 chr3R_22880001 RAL-595 993 chr3R 22916739 22916760 chr3R 22916814 22916838 5 77 1.5 2.0 1.8 1.8 99 chr3R 22916739 intron klg + chr3R 22916788 intron klg + chr3R 22916838 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-595 994 chr3R 22919156 22919184 chr3R 22919252 22919267 8 92 2.0 1.0 1.5 3.2 111 chr3R 22919156 intron klg + chr3R 22919212 intron klg + chr3R 22919267 intron klg + chr3R_8_22915001 chr3R_22915001 RAL-595 995 chr3R 22977081 22977098 chr3R 22977172 22977176 5 89 0.5 2.5 1.5 2.0 95 chr3R 22977081 intergenic CG17244 + chr3R 22977128 intergenic CG17244 + chr3R 22977176 intergenic CG17244 + chr3R_5_22975001 chr3R_22975001 RAL-595 996 chr3R 22993505 22993533 chr3R 22993640 22993669 10 131 1.5 3.5 2.5 2.9 164 chr3R 22993505 intron Nha2 - chr3R 22993587 intron Nha2 - chr3R 22993669 intron Nha2 - chr3R_10_22990001 chr3R_22990001 RAL-595 997 chr3R 23073654 23073685 chr3R 23073743 23073774 9 87 4.5 0.0 2.2 2.8 120 chr3R 23073654 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073774 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-595 998 chr3R 23090413 23090422 chr3R 23090495 23090505 4 82 4.5 3.5 4.0 0.8 92 chr3R 23090413 intron CG13830 - chr3R 23090459 intron CG13830 - chr3R 23090505 intron CG13830 - chr3R_4_23090001 chr3R_23090001 RAL-595 999 chr3R 23126563 23126575 chr3R 23126654 23126666 4 92 2.0 2.5 2.2 1.2 103 chr3R 23126563 intergenic CG31457 -,CG31365 - chr3R 23126614 3` UTR CG31457 - chr3R 23126666 3` UTR CG31457 - chr3R_4_23125001 chr3R_23125001 RAL-595 1000 chr3R 23134026 23134056 chr3R 23134126 23134155 12 97 4.0 2.5 3.2 2.9 129 chr3R 23134026 intron hh - chr3R 23134090 intron hh - chr3R 23134155 intron hh - chr3R_12_23130001 chr3R_23130001 RAL-595 1001 chr3R 23246003 23246026 chr3R 23246077 23246078 8 72 2.5 0.5 1.5 3.2 75 chr3R 23246003 intron CG4467 - chr3R 23246040 intron CG4467 - chr3R 23246078 intron CG4467 - chr3R_8_23245001 chr3R_23245001 RAL-595 1002 chr3R 23360184 23360195 chr3R 23360260 23360271 4 76 0.0 1.5 0.8 2.2 87 chr3R 23360184 3` UTR RpS3 + chr3R 23360228 intergenic RpS3 + chr3R 23360271 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-595 1003 chr3R 23497960 23497976 chr3R 23498043 23498055 5 82 3.5 4.0 3.8 1.0 95 chr3R 23497960 intergenic not near genes chr3R 23498008 intergenic not near genes chr3R 23498055 intergenic not near genes chr3R_5_23495001 chr3R_23495001 RAL-595 1004 chr3R 23825506 23825536 chr3R 23825583 23825583 7 69 2.0 5.0 3.5 1.6 77 chr3R 23825506 intron,3` UTR CG34355 +,CR43285 - chr3R 23825544 intron,3` UTR CG34355 +,CR43285 - chr3R 23825583 intron,3` UTR CG34355 +,CR43285 - chr3R_7_23825001 chr3R_23825001 RAL-595 1005 chr3R 23866565 23866583 chr3R 23867904 23867922 5 1339 1.5 3.5 2.5 1.4 1357 chr3R 23866565 intron Pli - chr3R 23867244 intron Pli - chr3R 23867922 intron Pli - chr3R_5_23865001 chr3R_23865001 RAL-595 1006 chr3R 23893785 23893815 chr3R 23893888 23893905 10 98 4.5 4.0 4.2 1.9 120 chr3R 23893785 intergenic sba -,tbrd-1 - chr3R 23893845 intergenic sba -,tbrd-1 - chr3R 23893905 intergenic sba - chr3R_10_23890001 chr3R_23890001 RAL-595 1007 chr3R 23944925 23944935 chr3R 23945008 23945020 5 83 3.5 3.5 3.5 1.1 95 chr3R 23944925 intron CG12268 - chr3R 23944972 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-595 1008 chr3R 24072089 24072096 chr3R 24072527 24072534 jockey 6 437 15.0 0.0 7.5 0.7 445 chr3R 24072089 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072534 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-595 1009 chr3R 24076915 24076947 chr3R 24078382 24078414 hobo 5 1466 1.5 3.0 2.2 1.6 1499 chr3R 24076915 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-595 1010 chr3R 24199746 24199773 chr3R 24199824 24199852 7 78 1.0 1.0 1.0 3.5 106 chr3R 24199746 intron twin - chr3R 24199799 intron twin - chr3R 24199852 intron twin - chr3R_7_24195001 chr3R_24195001 RAL-595 1011 chr3R 24434249 24434266 chr3R 24434327 24434343 4 76 0.5 3.0 1.8 1.4 94 chr3R 24434249 intron nAChRalpha1 - chr3R 24434296 intron nAChRalpha1 - chr3R 24434343 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-595 1012 chr3R 24466994 24467015 chr3R 24467079 24467101 6 88 0.0 3.5 1.8 2.1 107 chr3R 24466994 intergenic not near genes chr3R 24467048 intergenic not near genes chr3R 24467101 intergenic not near genes chr3R_6_24465001 chr3R_24465001 RAL-595 1013 chr3R 24670636 24670643 chr3R 24670812 24670819 5 176 7.0 4.0 5.5 0.8 183 chr3R 24670636 intron slo + chr3R 24670728 intron slo + chr3R 24670819 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-595 1014 chr3R 24730103 24730124 chr3R 24732468 24732473 Doc 9 2366 4.0 0.0 2.0 3.0 2370 chr3R 24730103 intron tok + chr3R 24731288 intron tok + chr3R 24732473 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-595 1015 chr3R 24739905 24739935 chr3R 24740017 24740047 10 111 7.5 4.5 6.0 1.4 142 chr3R 24739905 intron tok + chr3R 24739976 intron tok + chr3R 24740047 intron tok + chr3R_10_24735001 chr3R_24735001 RAL-595 1016 chr3R 24888102 24888130 chr3R 24888259 24888287 8 154 2.0 1.5 1.8 2.9 185 chr3R 24888102 intron CG31121 - chr3R 24888194 intron CG31121 - chr3R 24888287 intron CG31121 - chr3R_8_24885001 chr3R_24885001 RAL-595 1017 chr3R 24903806 24903812 chr3R 24904387 24904409 5 590 2.5 5.0 3.8 1.0 603 chr3R 24903806 intron CG13643 - chr3R 24904108 intron CG13643 - chr3R 24904409 intron CG13643 - chr3R_5_24900001 chr3R_24900001 RAL-595 1018 chr3R 24927143 24927152 chr3R 24931934 24931943 Doc 4 4791 2.0 2.0 2.0 1.3 4800 chr3R 24927143 intergenic Trf4-2 + chr3R 24929543 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-595 1019 chr3R 24938811 24938822 chr3R 24938893 24938904 6 81 1.0 4.0 2.5 1.7 93 chr3R 24938811 3` UTR ssh - chr3R 24938858 3` UTR ssh - chr3R 24938904 3` UTR ssh - chr3R_6_24935001 chr3R_24935001 RAL-595 1020 chr3R 24938830 24938832 chr3R 24938892 24938914 4 75 0.5 4.0 2.2 1.2 84 chr3R 24938830 3` UTR ssh - chr3R 24938872 3` UTR ssh - chr3R 24938914 3` UTR ssh - chr3R_4_24935001 chr3R_24935001 RAL-595 1021 chr3R 25006317 25006344 chr3R 25006699 25006725 10 381 1.0 2.0 1.5 4.0 408 chr3R 25006317 intron tnc + chr3R 25006521 intron tnc + chr3R 25006725 intron tnc + chr3R_10_25005001 chr3R_25005001 RAL-595 1022 chr3R 25235821 25236024 chr3R 25235898 25236128 5 99 0.0 0.0 0.0 5.0 307 chr3R 25235821 intergenic CG10420 - chr3R 25235974 intergenic CG10420 - chr3R 25236128 intergenic not near genes chr3R_5_25235001 chr3R_25235001 RAL-595 1023 chr3R 25289908 25289938 chr3R 25290005 25290035 6 94 5.5 1.5 3.5 1.3 127 chr3R 25289908 5` UTR CG11893 + chr3R 25289972 exon CG11893 + chr3R 25290035 exon CG11893 + chr3R_6_25285001 chr3R_25285001 RAL-595 1024 chr3R 25422061 25422098 chr3R 25422142 25422179 10 81 0.5 0.0 0.2 8.3 118 chr3R 25422061 intron Fur1 - chr3R 25422120 intron Fur1 - chr3R 25422179 intron Fur1 - chr3R_10_25420001 chr3R_25420001 RAL-595 1025 chr3R 25443113 25443135 chr3R 25443199 25443221 5 87 1.5 1.5 1.5 2.0 108 chr3R 25443113 intron Fur1 - chr3R 25443167 intron Fur1 - chr3R 25443221 intron Fur1 - chr3R_5_25440001 chr3R_25440001 RAL-595 1026 chr3R 25512400 25512421 chr3R 25512479 25512499 15 79 2.5 5.0 3.8 3.1 99 chr3R 25512400 intergenic not near genes chr3R 25512450 intergenic not near genes chr3R 25512499 intergenic not near genes chr3R_15_25510001 chr3R_25510001 RAL-595 1027 chr3R 25689126 25689160 chr3R 25689234 25689268 6 108 3.0 3.5 3.2 1.4 142 chr3R 25689126 intergenic not near genes chr3R 25689197 intergenic not near genes chr3R 25689268 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-595 1028 chr3R 25832693 25832723 chr3R 25841875 25841905 roo 13 9179 4.5 7.0 5.8 1.9 9212 chr3R 25832693 exon alpha4GT2 + chr3R 25837299 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-595 1029 chr3R 25974695 25974702 chr3R 25974792 25974799 4 97 4.0 9.5 6.8 0.5 104 chr3R 25974695 intron CG42261 + chr3R 25974747 intron CG42261 + chr3R 25974799 intron CG42261 + chr3R_4_25970001 chr3R_25970001 RAL-595 1030 chr3R 26093844 26093872 chr3R 26093922 26093950 7 78 2.5 0.5 1.5 2.8 106 chr3R 26093844 intron dys - chr3R 26093897 intron dys - chr3R 26093950 intron dys - chr3R_7_26090001 chr3R_26090001 RAL-595 1031 chr3R 26121956 26121980 chr3R 26122053 26122076 8 94 1.5 3.5 2.5 2.3 120 chr3R 26121956 intron CG31324 + chr3R 26122016 intron CG31324 + chr3R 26122076 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-595 1032 chr3R 26122461 26122479 chr3R 26122537 26122555 18 71 5.5 8.0 6.8 2.3 94 chr3R 26122461 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122555 intron CG31324 + chr3R_18_26120001 chr3R_26120001 RAL-595 1033 chr3R 26119145 26119182 chr3R 26122637 26122673 7 3494 14.0 24.0 19.0 0.3 3528 chr3R 26119145 intron CG31324 + chr3R 26120909 intron CG31324 + chr3R 26122673 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-595 1034 chr3R 26126280 26126290 chr3R 26126385 26126395 6 105 3.5 3.5 3.5 1.3 115 chr3R 26126280 intron CG31324 + chr3R 26126338 intron CG31324 + chr3R 26126395 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-595 1035 chr3R 26131189 26131195 chr3R 26135292 26135316 11 4101 17.0 27.0 22.0 0.5 4127 chr3R 26131189 intergenic not near genes chr3R 26133252 5` UTR CG6142 + chr3R 26135316 exon CG6142 + chr3R_11_26130001 chr3R_26130001 RAL-595 1036 chr3R 26235497 26235522 chr3R 26235573 26235603 6 73 3.0 2.5 2.8 1.6 106 chr3R 26235497 5` UTR CR42745 + chr3R 26235550 5` UTR CR42745 + chr3R 26235603 5` UTR CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-595 1037 chr3R 26241249 26241275 chr3R 26241340 26241366 5 84 1.5 5.0 3.2 1.2 117 chr3R 26241249 intron CR42745 + chr3R 26241308 intron CR42745 + chr3R 26241366 intron CR42745 + chr3R_5_26240001 chr3R_26240001 RAL-595 1038 chr3R 26294735 26294750 chr3R 26294813 26294826 5 78 1.5 2.5 2.0 1.7 91 chr3R 26294735 intergenic not near genes chr3R 26294780 intergenic not near genes chr3R 26294826 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-595 1039 chr3R 26298654 26298675 chr3R 26299163 26299163 9 507 16.0 14.0 15.0 0.6 509 chr3R 26298654 intergenic not near genes chr3R 26298908 intergenic not near genes chr3R 26299163 intergenic not near genes chr3R_9_26295001 chr3R_26295001 RAL-595 1040 chr3R 26297972 26298005 chr3R 26299365 26299398 6 1393 20.0 16.5 18.2 0.3 1426 chr3R 26297972 intergenic not near genes chr3R 26298685 intergenic not near genes chr3R 26299398 intergenic not near genes chr3R_6_26295001 chr3R_26295001 RAL-595 1041 chr3R 26368439 26368460 chr3R 26369070 26369091 12 632 1.5 3.5 2.5 3.4 652 chr3R 26368439 intergenic not near genes chr3R 26368765 intergenic not near genes chr3R 26369091 intergenic not near genes chr3R_12_26365001 chr3R_26365001 RAL-595 1042 chr3R 26607748 26607769 chr3R 26607824 26607844 5 75 1.5 0.5 1.0 2.5 96 chr3R 26607748 5` UTR CR44951 + chr3R 26607796 5` UTR CR44951 + chr3R 26607844 5` UTR CR44951 + chr3R_5_26605001 chr3R_26605001 RAL-595 1043 chr3R 26642745 26642759 chr3R 26643121 26643153 jockey 6 391 0.5 3.0 1.8 2.1 408 chr3R 26642745 intergenic not near genes chr3R 26642949 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-595 1044 chr3R 26669666 26669681 chr3R 26669748 26669763 4 82 1.5 0.5 1.0 2.0 97 chr3R 26669666 intron beat-VII - chr3R 26669714 intron beat-VII - chr3R 26669763 intron beat-VII - chr3R_4_26665001 chr3R_26665001 RAL-595 1045 chr3R 26698838 26698864 chr3R 26698917 26698943 7 78 0.5 0.0 0.2 5.8 105 chr3R 26698838 3` UTR amon - chr3R 26698890 3` UTR amon - chr3R 26698943 3` UTR amon - chr3R_7_26695001 chr3R_26695001 RAL-595 1046 chr3R 26723088 26723114 chr3R 26723187 26723212 5 98 2.0 0.5 1.2 2.3 124 chr3R 26723088 exon CG6420 - chr3R 26723150 intron CG6420 - chr3R 26723212 intron CG6420 - chr3R_5_26720001 chr3R_26720001 RAL-595 1047 chr3R 26845574 26845606 chr3R 26845654 26845686 12 79 1.0 4.0 2.5 3.4 112 chr3R 26845574 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845686 intron Lerp - chr3R_12_26845001 chr3R_26845001 RAL-595 1048 chr3R 26940994 26941018 chr3R 26941257 26941280 8 262 0.5 2.0 1.2 3.6 286 chr3R 26940994 intron sda + chr3R 26941137 intron sda + chr3R 26941280 intron sda + chr3R_8_26940001 chr3R_26940001 RAL-595 1049 chr3R 27005047 27005074 chr3R 27005176 27005200 10 126 3.0 2.5 2.8 2.6 153 chr3R 27005047 intron,intron RYa-R +,CG6296 - chr3R 27005124 intron,exon RYa-R +,CG6296 - chr3R 27005200 intron,exon RYa-R +,CG6296 - chr3R_10_27005001 chr3R_27005001 RAL-595 1050 chr3R 27007409 27007427 chr3R 27016544 27016562 roo 4 9135 0.5 4.0 2.2 1.2 9153 chr3R 27007409 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016562 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-595 1051 chr3R 27028729 27028750 chr3R 27028808 27028829 7 79 1.0 2.5 1.8 2.5 100 chr3R 27028729 intron RYa-R + chr3R 27028779 intron RYa-R + chr3R 27028829 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-595 1052 chr3R 27029171 27029198 chr3R 27029249 27029276 10 73 5.0 4.0 4.5 1.8 105 chr3R 27029171 intron RYa-R + chr3R 27029224 intron RYa-R + chr3R 27029276 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-595 1053 chr3R 27140514 27140539 chr3R 27148124 27148149 412 14 7610 4.0 3.0 3.5 3.1 7635 chr3R 27140514 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148149 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-595 1054 chr3R 27292286 27292308 chr3R 27292397 27292417 6 110 1.0 4.5 2.8 1.6 131 chr3R 27292286 intergenic CG3348 - chr3R 27292352 intergenic CG3348 - chr3R 27292417 intergenic CG3348 - chr3R_6_27290001 chr3R_27290001 RAL-595 1055 chr3R 27300860 27300877 chr3R 27300952 27300969 8 91 0.5 1.5 1.0 4.0 109 chr3R 27300860 intron CG3339 - chr3R 27300914 intron CG3339 - chr3R 27300969 intron CG3339 - chr3R_8_27300001 chr3R_27300001 RAL-595 1056 chr3R 27327437 27327454 chr3R 27327516 27327533 5 76 1.0 1.0 1.0 2.5 96 chr3R 27327437 intergenic not near genes chr3R 27327485 intergenic not near genes chr3R 27327533 intergenic not near genes chr3R_5_27325001 chr3R_27325001 RAL-595 1057 chr3R 27396205 27396220 chr3R 27396318 27396323 5 110 4.0 3.0 3.5 1.1 118 chr3R 27396205 intron side - chr3R 27396264 intron side - chr3R 27396323 intron side - chr3R_5_27395001 chr3R_27395001 RAL-595 1058 chr3R 27445263 27445276 chr3R 27445329 27445338 8 66 0.5 2.0 1.2 3.6 75 chr3R 27445263 intergenic not near genes chr3R 27445300 intergenic not near genes chr3R 27445338 intergenic not near genes chr3R_8_27445001 chr3R_27445001 RAL-595 1059 chr3R 27539805 27539833 chr3R 27540098 27540126 7 293 1.0 5.0 3.0 1.8 321 chr3R 27539805 intergenic not near genes chr3R 27539966 intergenic not near genes chr3R 27540126 intergenic not near genes chr3R_7_27535001 chr3R_27535001 RAL-595 1060 chr3R 27544939 27544949 chr3R 27545264 27545274 7 325 1.5 3.0 2.2 2.2 335 chr3R 27544939 exon Gr98c + chr3R 27545106 exon Gr98c + chr3R 27545274 exon Gr98c + chr3R_7_27545001 chr3R_27545001 RAL-595 1061 chr3R 27619700 27619731 chr3R 27619815 27619846 6 113 0.5 4.0 2.2 1.9 146 chr3R 27619700 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619846 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-595 1062 chr3R 27627099 27627112 chr3R 27627201 27627214 5 102 2.5 6.0 4.2 1.0 115 chr3R 27627099 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627214 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-595 1063 chr3R 27648611 27648865 chr3R 27648692 27648942 16 77 3.5 0.0 1.8 5.7 331 chr3R 27648611 intron tau - chr3R 27648776 intron tau - chr3R 27648942 intron tau - chr3R_16_27645001 chr3R_27645001 RAL-595 1064 chr3R 27706713 27706810 chr3R 27706789 27706876 5 72 0.0 0.0 0.0 5.0 163 chr3R 27706713 5` UTR CG12428 - chr3R 27706794 intergenic CG12428 -,CG12877 + chr3R 27706876 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-595 1065 chr3R 27725568 27725579 chr3R 27731009 27731021 I-element 4 5442 3.0 3.0 3.0 1.0 5453 chr3R 27725568 intergenic not near genes chr3R 27728294 intergenic not near genes chr3R 27731021 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-595 1066 chr3R 27779270 27779285 chr3R 27779350 27779365 7 79 2.0 3.5 2.8 1.8 95 chr3R 27779270 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-595 1067 chr3R 27799941 27799960 chr3R 27800020 27800042 5 81 2.0 1.0 1.5 2.0 101 chr3R 27799941 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800042 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-595 1068 chr3R 27823687 27823694 chr3R 27823752 27823769 4 72 2.0 0.5 1.2 1.8 82 chr3R 27823687 intron CG34353 - chr3R 27823728 intron CG34353 - chr3R 27823769 intron CG34353 - chr3R_4_27820001 chr3R_27820001 RAL-595 1069 chr3R 27870295 27870327 chr3R 27870378 27870410 9 83 4.5 0.5 2.5 2.6 115 chr3R 27870295 intron CG34353 - chr3R 27870352 intron CG34353 - chr3R 27870410 intron CG34353 - chr3R_9_27870001 chr3R_27870001 RAL-595 1070 chr3R 27872820 27872826 chr3R 27872900 27872906 4 79 0.5 1.0 0.8 2.2 86 chr3R 27872820 intron CG34353 - chr3R 27872863 intron CG34353 - chr3R 27872906 intron CG34353 - chr3R_4_27870001 chr3R_27870001 RAL-595 1071 chr3R 27885065 27885095 chr3R 27885365 27885395 12 293 2.5 1.5 2.0 4.0 330 chr3R 27885065 intron CG34353 - chr3R 27885230 intron CG34353 - chr3R 27885395 intron CG34353 - chr3R_12_27885001 chr3R_27885001 RAL-595 1072 chr3R 28131444 28131459 chr3R 28131625 28131641 5 182 1.0 2.0 1.5 2.0 197 chr3R 28131444 intergenic not near genes chr3R 28131542 intergenic not near genes chr3R 28131641 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-595 1073 chr3R 28172965 28172996 chr3R 28173118 28173153 6 156 1.5 0.5 1.0 3.0 188 chr3R 28172965 intron CG34354 + chr3R 28173059 intron CG34354 + chr3R 28173153 intron CG34354 + chr3R_6_28170001 chr3R_28170001 RAL-595 1074 chr3R 28198004 28198038 chr3R 28198090 28198122 10 82 1.0 2.0 1.5 4.0 118 chr3R 28198004 intron CG34354 + chr3R 28198063 intron CG34354 + chr3R 28198122 intron CG34354 + chr3R_10_28195001 chr3R_28195001 RAL-595 1075 chr3R 28223754 28223780 chr3R 28223843 28223870 8 89 2.5 1.5 2.0 2.7 116 chr3R 28223754 intron CG34354 + chr3R 28223812 intron CG34354 + chr3R 28223870 intron CG34354 + chr3R_8_28220001 chr3R_28220001 RAL-595 1076 chr3R 28253340 28253366 chr3R 28255850 28255875 jockey 9 2508 1.0 5.5 3.2 2.1 2535 chr3R 28253340 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255875 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-595 1077 chr3R 28360188 28360211 chr3R 28360270 28360289 11 74 2.5 1.0 1.8 3.9 101 chr3R 28360188 intergenic not near genes chr3R 28360238 intergenic not near genes chr3R 28360289 intergenic not near genes chr3R_11_28360001 chr3R_28360001 RAL-595 1078 chr3R 28407708 28407740 chr3R 28407789 28407826 11 85 0.5 3.0 1.8 3.9 118 chr3R 28407708 intergenic not near genes chr3R 28407767 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_11_28405001 chr3R_28405001 RAL-595 1079 chr3R 28442176 28442188 chr3R 28442263 28442274 7 85 1.5 6.0 3.8 1.5 98 chr3R 28442176 intron beat-VI + chr3R 28442225 intron beat-VI + chr3R 28442274 intron beat-VI + chr3R_7_28440001 chr3R_28440001 RAL-595 1080 chr3R 28478418 28478424 chr3R 28478499 28478501 4 79 4.0 3.0 3.5 0.9 83 chr3R 28478418 intergenic not near genes chr3R 28478460 intergenic not near genes chr3R 28478501 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-595 1081 chr3R 28478426 28478442 chr3R 28478495 28478523 6 78 2.5 3.0 2.8 1.6 97 chr3R 28478426 intergenic not near genes chr3R 28478474 intergenic not near genes chr3R 28478523 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-595 1082 chr3R 28484353 28484375 chr3R 28486270 28486292 32 1918 22.0 56.0 39.0 0.8 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_32_28485001 chr3R_28485001 RAL-595 1083 chr3R 28792872 28792898 chr3R 28797967 28797991 jockey 5 5095 1.5 5.5 3.5 1.1 5119 chr3R 28792872 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797991 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-595 1084 chr3R 21907534 21907536 chr3R 28831801 28831801 12 6924266 11.0 13.5 12.2 0.9 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_12_25365001 chr3R_25365001 RAL-595 1085 chr3R 21907534 21907536 chr3R 28831802 28831802 15 6924267 11.0 13.5 12.2 1.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-595 1086 chr3R 29032751 29032776 chr3R 29032826 29032845 6 75 2.5 0.0 1.2 2.7 94 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032798 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032845 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_6_29030001 chr3R_29030001 RAL-595 1087 chr3R 29079388 29079410 chr3R 29080750 29080782 NOF 5 1365 1.0 1.0 1.0 2.5 1394 chr3R 29079388 intron CG11873 + chr3R 29080085 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-595 1088 chr3R 29106658 29106685 chr3R 29111247 29111268 10 4585 27.5 27.5 27.5 0.4 4610 chr3R 29106658 exon CG11873 + chr3R 29108963 intergenic CG11873 +,alpha-Man-Ib - chr3R 29111268 exon alpha-Man-Ib - chr3R_10_29105001 chr3R_29105001 RAL-595 1089 chr3R 29211199 29211218 chr3R 29211316 29211334 6 114 2.0 1.0 1.5 2.4 135 chr3R 29211199 intergenic not near genes chr3R 29211266 intergenic not near genes chr3R 29211334 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-595 1090 chr3R 29239222 29239246 chr3R 29245513 29245536 4 6290 1.5 17.0 9.2 0.4 6314 chr3R 29239222 exon CG31427 - chr3R 29242379 exon CG31445 - chr3R 29245536 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-595 1091 chr3R 29249621 29249918 chr3R 29249708 29250007 4 88 1.5 2.5 2.0 1.3 386 chr3R 29249621 intron SP1029 - chr3R 29249814 intron SP1029 - chr3R 29250007 intron SP1029 - chr3R_4_29245001 chr3R_29245001 RAL-595 1092 chr3R 29282810 29282811 chr3R 29282896 29282897 4 86 2.5 9.5 6.0 0.6 87 chr3R 29282810 intergenic not near genes chr3R 29282854 intergenic not near genes chr3R 29282897 intergenic not near genes chr3R_4_29280001 chr3R_29280001 RAL-595 1093 chr3R 29406624 29406627 chr3R 29407909 29407913 jockey 5 1285 4.5 2.5 3.5 1.1 1289 chr3R 29406624 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407913 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-595 1094 chr3R 29406628 29406649 chr3R 29407898 29407899 jockey 10 1279 2.5 2.5 2.5 2.9 1271 chr3R 29406628 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407899 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-595 1095 chr3R 29415609 29415635 chr3R 29415773 29415805 14 165 20.5 12.0 16.2 0.8 196 chr3R 29415609 intron Ptp99A + chr3R 29415707 intron Ptp99A + chr3R 29415805 intron Ptp99A + chr3R_14_29415001 chr3R_29415001 RAL-595 1096 chr3R 29505909 29505926 chr3R 29505986 29506000 4 76 0.0 7.0 3.5 0.9 91 chr3R 29505909 intergenic not near genes chr3R 29505954 intergenic not near genes chr3R 29506000 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-595 1097 chr3R 29510167 29510203 chr3R 29510244 29510275 7 59 2.0 5.0 3.5 1.6 108 chr3R 29510167 intergenic not near genes chr3R 29510221 intergenic not near genes chr3R 29510275 intergenic not near genes chr3R_7_29510001 chr3R_29510001 RAL-595 1098 chr3R 29539436 29539461 chr3R 29539512 29539537 6 76 1.5 0.0 0.8 3.3 101 chr3R 29539436 intergenic not near genes chr3R 29539486 intergenic not near genes chr3R 29539537 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-595 1099 chr3R 29590384 29590399 chr3R 29590476 29590492 7 93 1.5 3.5 2.5 2.0 108 chr3R 29590384 intron CG31041 - chr3R 29590438 intron CG31041 - chr3R 29590492 intron CG31041 - chr3R_7_29590001 chr3R_29590001 RAL-595 1100 chr3R 29609433 29609442 chr3R 29609513 29609526 4 84 2.5 5.0 3.8 0.8 93 chr3R 29609433 intron alph + chr3R 29609480 intron alph + chr3R 29609526 intron alph + chr3R_4_29605001 chr3R_29605001 RAL-595 1101 chr3R 29645833 29645854 chr3R 29645913 29645934 8 79 6.5 0.5 3.5 1.8 101 chr3R 29645833 intron Dop1R2 - chr3R 29645884 intron Dop1R2 - chr3R 29645934 intron Dop1R2 - chr3R_8_29645001 chr3R_29645001 RAL-595 1102 chr3R 29738264 29738297 chr3R 29739731 29739763 hobo 14 1466 0.0 3.0 1.5 5.6 1499 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_14_29735001 chr3R_29735001 RAL-595 1103 chr3R 29758941 29758965 chr3R 29759015 29759043 6 77 5.0 2.5 3.8 1.2 102 chr3R 29758941 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759043 intergenic CR44953 - chr3R_6_29755001 chr3R_29755001 RAL-595 1104 chr3R 29831812 29831842 chr3R 29831897 29831926 13 84 3.0 3.5 3.2 3.1 114 chr3R 29831812 exon Atg16 - chr3R 29831869 intron Atg16 - chr3R 29831926 exon Atg16 - chr3R_13_29830001 chr3R_29830001 RAL-595 1105 chr3R 29854828 29854855 chr3R 29854908 29854935 9 78 0.5 5.0 2.8 2.4 107 chr3R 29854828 3` UTR dgt1 - chr3R 29854882 exon dgt1 - chr3R 29854935 exon dgt1 - chr3R_9_29850001 chr3R_29850001 RAL-595 1106 chr3R 29882028 29882052 chr3R 29891180 29891209 roo 4 9156 2.5 3.0 2.8 1.1 9181 chr3R 29882028 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-595 1107 chr3R 29950575 29950599 chr3R 29950651 29950675 9 73 2.0 0.5 1.2 4.1 100 chr3R 29950575 intergenic TkR99D - chr3R 29950625 intergenic TkR99D - chr3R 29950675 intergenic TkR99D - chr3R_9_29950001 chr3R_29950001 RAL-595 1108 chr3R 29963476 29963507 chr3R 29963578 29963586 7 96 4.5 1.0 2.8 1.8 110 chr3R 29963476 intron TkR99D - chr3R 29963531 intron TkR99D - chr3R 29963586 intron TkR99D - chr3R_7_29960001 chr3R_29960001 RAL-595 1109 chr3R 29982067 29982090 chr3R 29982182 29982208 5 116 2.0 1.5 1.8 1.8 141 chr3R 29982067 intergenic not near genes chr3R 29982138 intergenic not near genes chr3R 29982208 intergenic not near genes chr3R_5_29980001 chr3R_29980001 RAL-595 1110 chr3R 30001731 30001759 chr3R 30001807 30001818 7 72 2.0 1.0 1.5 2.8 87 chr3R 30001731 intron Tace + chr3R 30001774 intron Tace + chr3R 30001818 intron Tace + chr3R_7_30000001 chr3R_30000001 RAL-595 1111 chr3R 30032172 30032178 chr3R 30032249 30032257 4 78 2.5 1.0 1.8 1.4 85 chr3R 30032172 intron Axn + chr3R 30032214 intron Axn + chr3R 30032257 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-595 1112 chr3R 30084850 30084881 chr3R 30086317 30086348 hobo 13 1466 2.5 3.5 3.0 3.2 1498 chr3R 30084850 intron sima + chr3R 30085599 intron sima + chr3R 30086348 intron sima + chr3R_13_30085001 chr3R_30085001 RAL-595 1113 chr3R 30097484 30097507 chr3R 30097565 30097588 5 77 2.0 0.5 1.2 2.3 104 chr3R 30097484 intron sima + chr3R 30097536 intron sima + chr3R 30097588 intron sima + chr3R_5_30095001 chr3R_30095001 RAL-595 1114 chr3R 30109198 30109219 chr3R 30109282 30109303 5 84 2.5 6.0 4.2 1.0 105 chr3R 30109198 intron sima + chr3R 30109250 intron sima + chr3R 30109303 intron sima + chr3R_5_30105001 chr3R_30105001 RAL-595 1115 chr3R 30170764 30170772 chr3R 30170851 30170857 5 87 4.5 2.5 3.5 1.1 93 chr3R 30170764 intron CG31028 - chr3R 30170810 intron CG31028 - chr3R 30170857 intron CG31028 - chr3R_5_30170001 chr3R_30170001 RAL-595 1116 chr3R 30330500 30330517 chr3R 30330569 30330596 4 76 1.5 2.0 1.8 1.4 96 chr3R 30330500 intron hdc + chr3R 30330548 intron hdc + chr3R 30330596 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-595 1117 chr3R 30396216 30396243 chr3R 30404482 30404509 roo 11 8265 1.5 2.5 2.0 3.7 8293 chr3R 30396216 intergenic not near genes chr3R 30400362 intergenic not near genes chr3R 30404509 5` UTR CR45570 + chr3R_11_30400001 chr3R_30400001 RAL-595 1118 chr3R 30480472 30480510 chr3R 30482940 30482978 jockey 13 2467 3.0 3.0 3.0 3.2 2506 chr3R 30480472 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-595 1119 chr3R 30566739 30566774 chr3R 30566834 30566869 11 91 4.0 1.0 2.5 3.1 130 chr3R 30566739 intron tmod + chr3R 30566804 intron tmod + chr3R 30566869 intron tmod + chr3R_11_30565001 chr3R_30565001 RAL-595 1120 chr3R 30627604 30627637 chr3R 30627682 30627712 15 77 2.5 5.5 4.0 3.0 108 chr3R 30627604 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_15_30625001 chr3R_30625001 RAL-595 1121 chr3R 30980885 30980893 chr3R 30981038 30981044 5 152 0.5 1.5 1.0 2.5 159 chr3R 30980885 intron 5-HT7 - chr3R 30980964 intron 5-HT7 - chr3R 30981044 intron 5-HT7 - chr3R_5_30980001 chr3R_30980001 RAL-595 1122 chr3R 30996638 30996665 chr3R 30996862 30996889 8 223 1.0 1.5 1.2 3.6 251 chr3R 30996638 intron 5-HT7 - chr3R 30996764 intron 5-HT7 - chr3R 30996889 intron 5-HT7 - chr3R_8_30995001 chr3R_30995001 RAL-595 1123 chr3R 31026490 31026521 chr3R 31026571 31026602 12 80 1.5 5.5 3.5 2.7 112 chr3R 31026490 intergenic not near genes chr3R 31026546 intergenic not near genes chr3R 31026602 intergenic not near genes chr3R_12_31025001 chr3R_31025001 RAL-595 1124 chr3R 31042111 31042135 chr3R 31042198 31042222 7 87 2.0 0.5 1.2 3.2 111 chr3R 31042111 intron CanA1 + chr3R 31042166 intron CanA1 + chr3R 31042222 intron CanA1 + chr3R_7_31040001 chr3R_31040001 RAL-595 1125 chr3R 31070861 31070877 chr3R 31070940 31070947 5 78 2.5 2.5 2.5 1.4 86 chr3R 31070861 intron Sox100B + chr3R 31070904 intron Sox100B + chr3R 31070947 intron Sox100B + chr3R_5_31070001 chr3R_31070001 RAL-595 1126 chr3R 31074242 31074254 chr3R 31081839 31081852 springer 4 7598 5.5 1.5 3.5 0.9 7610 chr3R 31074242 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-595 1127 chr3R 31274365 31274395 chr3R 31274443 31274472 11 77 2.5 2.5 2.5 3.1 107 chr3R 31274365 intergenic not near genes chr3R 31274418 intergenic not near genes chr3R 31274472 intergenic not near genes chr3R_11_31270001 chr3R_31270001 RAL-595 1128 chr3R 31412706 31412739 chr3R 31412799 31412825 5 92 2.0 1.0 1.5 2.0 119 chr3R 31412706 intron Gprk2 + chr3R 31412766 intron Gprk2 + chr3R 31412825 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-595 1129 chr3R 31413087 31413114 chr3R 31418287 31418311 copia 8 5199 2.5 0.5 1.5 3.2 5224 chr3R 31413087 intron Gprk2 + chr3R 31415699 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-595 1130 chr3R 31426884 31426909 chr3R 31426976 31427001 4 92 2.5 0.0 1.2 1.8 117 chr3R 31426884 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427001 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-595 1131 chr3R 31618733 31618761 chr3R 31618819 31618847 4 86 4.0 3.5 3.8 0.8 114 chr3R 31618733 exon pasha + chr3R 31618790 intron pasha + chr3R 31618847 intron pasha + chr3R_4_31615001 chr3R_31615001 RAL-595 1132 chr3R 31640833 31640850 chr3R 31641057 31641074 5 224 4.0 5.0 4.5 0.9 241 chr3R 31640833 intron kek6 + chr3R 31640954 intron kek6 + chr3R 31641074 intron kek6 + chr3R_5_31640001 chr3R_31640001 RAL-595 1133 chr3R 31640853 31640862 chr3R 31641054 31641083 8 217 2.5 3.5 3.0 2.0 230 chr3R 31640853 intron kek6 + chr3R 31640968 intron kek6 + chr3R 31641083 intron kek6 + chr3R_8_31640001 chr3R_31640001 RAL-595 1134 chr3R 31691540 31691557 chr3R 31696306 31696323 Doc 8 4766 2.5 5.5 4.0 1.6 4783 chr3R 31691540 intergenic not near genes chr3R 31693932 intergenic not near genes chr3R 31696323 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-595 1135 chr3R 31691559 31691564 chr3R 31696298 31696325 Doc 7 4753 1.5 5.0 3.2 1.7 4766 chr3R 31691559 intergenic not near genes chr3R 31693942 intergenic not near genes chr3R 31696325 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-595 1136 chr3R 31961356 31961368 chr3R 31961421 31961423 6 71 1.0 2.0 1.5 2.4 67 chr3R 31961356 intron heph - chr3R 31961390 intron heph - chr3R 31961423 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-595 1137 chr3R 31998001 31998021 chr3R 32005470 32005491 blood 4 7469 0.0 3.5 1.8 1.4 7490 chr3R 31998001 intron heph - chr3R 32001746 intron heph - chr3R 32005491 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-595 1138 chr4 76498 76525 chr4 81940 81951 I-element 8 5440 4.0 1.0 2.5 2.3 5453 chr4 76498 intron pan + chr4 79224 intron pan + chr4 81951 intron pan + chr4_8_75001 chr4_75001 RAL-595 1139 chrX 325634 325643 chrX 325717 325727 4 84 0.5 1.0 0.8 2.2 93 chrX 325634 intron,intron CG3777 +,CG32816 - chrX 325680 intron,intron CG3777 +,CG32816 - chrX 325727 intron,intron CG3777 +,CG32816 - chrX_4_325001 chrX_325001 RAL-595 1140 chrX 367037 367055 chrX 367134 367151 4 92 2.0 1.0 1.5 1.6 114 chrX 367037 intron,5` UTR CG32816 -,yar + chrX 367094 intron CG32816 - chrX 367151 intron CG32816 - chrX_4_365001 chrX_365001 RAL-595 1141 chrX 443493 443524 chrX 443575 443606 7 82 1.5 2.0 1.8 2.5 113 chrX 443493 intron CG32816 - chrX 443550 intron CG32816 - chrX 443606 intron CG32816 - chrX_7_440001 chrX_440001 RAL-595 1142 chrX 494614 494634 chrX 494691 494726 8 90 4.0 1.0 2.5 2.3 112 chrX 494614 5` UTR CG17778 + chrX 494670 5` UTR CG17778 + chrX 494726 intron CG17778 + chrX_8_490001 chrX_490001 RAL-595 1143 chrX 547641 547665 chrX 547885 547909 4 244 0.5 2.0 1.2 1.8 268 chrX 547641 intron Appl + chrX 547775 intron Appl + chrX 547909 intron Appl + chrX_4_545001 chrX_545001 RAL-595 1144 chrX 551425 551450 chrX 558986 559011 412 8 7559 4.5 1.5 3.0 2.0 7586 chrX 551425 intron Appl + chrX 555218 intron Appl + chrX 559011 intron Appl + chrX_8_555001 chrX_555001 RAL-595 1145 chrX 670262 670284 chrX 670342 670362 5 80 0.0 1.0 0.5 3.3 100 chrX 670262 intergenic not near genes chrX 670312 intergenic not near genes chrX 670362 intergenic not near genes chrX_5_670001 chrX_670001 RAL-595 1146 chrX 680841 680870 chrX 680924 680953 11 83 4.5 4.5 4.5 2.0 112 chrX 680841 intergenic not near genes chrX 680897 intergenic not near genes chrX 680953 intergenic not near genes chrX_11_680001 chrX_680001 RAL-595 1147 chrX 802287 802319 chrX 802364 802378 9 72 1.0 4.0 2.5 2.6 91 chrX 802287 exon CG13359 - chrX 802332 exon CG13359 - chrX 802378 exon CG13359 - chrX_9_800001 chrX_800001 RAL-595 1148 chrX 827604 827631 chrX 835396 835423 roo 6 7792 4.0 2.0 3.0 1.5 7819 chrX 827604 intron CG43867 - chrX 831514 intron CG43867 - chrX 835423 intron CG43867 - chrX_6_830001 chrX_830001 RAL-595 1149 chrX 906714 906729 chrX 908500 908518 S-element 6 1788 3.5 3.0 3.2 1.4 1804 chrX 906714 intron CG43867 - chrX 907616 intron CG43867 - chrX 908518 intron CG43867 - chrX_6_905001 chrX_905001 RAL-595 1150 chrX 1253731 1253764 chrX 1253813 1253846 8 82 2.0 3.0 2.5 2.3 115 chrX 1253731 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253846 intron Atf3 - chrX_8_1250001 chrX_1250001 RAL-595 1151 chrX 1518042 1518063 chrX 1523440 1523460 jockey 4 5399 2.0 2.0 2.0 1.3 5418 chrX 1518042 intergenic inc + chrX 1520751 intergenic not near genes chrX 1523460 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-595 1152 chrX 1627977 1627995 chrX 1635444 1635463 gtwin 7 7467 4.5 3.0 3.8 1.5 7486 chrX 1627977 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635463 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-595 1153 chrX 1674855 1674878 chrX 1674931 1674936 4 72 2.5 0.0 1.2 1.8 81 chrX 1674855 3` UTR CG32809 - chrX 1674896 3` UTR CG32809 - chrX 1674936 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-595 1154 chrX 1903350 1903370 chrX 1903431 1903452 10 82 3.5 2.5 3.0 2.5 102 chrX 1903350 5` UTR CR43864 + chrX 1903401 5` UTR CR43864 + chrX 1903452 5` UTR CR43864 + chrX_10_1900001 chrX_1900001 RAL-595 1155 chrX 1954888 1954917 chrX 1962827 1962841 Stalker2 4 7931 1.0 0.5 0.8 2.2 7953 chrX 1954888 intron Hr4 + chrX 1958864 intron Hr4 + chrX 1962841 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-595 1156 chrX 2526565 2526579 chrX 2526650 2526666 4 86 0.5 3.5 2.0 1.3 101 chrX 2526565 intron trol - chrX 2526616 intron trol - chrX 2526666 intron trol - chrX_4_2525001 chrX_2525001 RAL-595 1157 chrX 2568196 2568227 chrX 2568444 2568475 6 248 3.5 3.0 3.2 1.4 279 chrX 2568196 intron Pdfr + chrX 2568336 intron Pdfr + chrX 2568475 intron Pdfr + chrX_6_2565001 chrX_2565001 RAL-595 1158 chrX 2578820 2578828 chrX 2578911 2578919 4 91 4.5 0.0 2.2 1.2 99 chrX 2578820 intergenic Pdfr +,Vha36-3 - chrX 2578870 intergenic Vha36-3 -,Pdfr + chrX 2578919 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-595 1159 chrX 2877054 2877072 chrX 2877156 2877174 5 102 0.5 1.5 1.0 2.5 120 chrX 2877054 intron kirre + chrX 2877114 intron kirre + chrX 2877174 intron kirre + chrX_5_2875001 chrX_2875001 RAL-595 1160 chrX 3195311 3195332 chrX 3195424 3195445 6 113 2.5 1.0 1.8 2.1 134 chrX 3195311 intron dnc + chrX 3195378 intron dnc + chrX 3195445 intron dnc + chrX_6_3195001 chrX_3195001 RAL-595 1161 chrX 3408991 3409017 chrX 3409068 3409094 6 77 0.0 2.5 1.2 2.7 103 chrX 3408991 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_6_3405001 chrX_3405001 RAL-595 1162 chrX 3415028 3415045 chrX 3421208 3421230 3S18 4 6183 0.5 0.0 0.2 3.3 6202 chrX 3415028 intron,intron CR44999 +,CG12535 - chrX 3418129 intron,intron CR44999 +,CG12535 - chrX 3421230 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-595 1163 chrX 3481745 3481768 chrX 3481821 3481844 4 76 2.5 3.0 2.8 1.1 99 chrX 3481745 intron,intron CR44999 +,CG10804 - chrX 3481794 intron,intron CR44999 +,CG10804 - chrX 3481844 intron,intron CR44999 +,CG10804 - chrX_4_3480001 chrX_3480001 RAL-595 1164 chrX 3493099 3493125 chrX 3502258 3502277 roo 4 9157 2.0 0.0 1.0 2.0 9178 chrX 3493099 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502277 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-595 1165 chrX 3509227 3509236 chrX 3509308 3509316 4 80 4.0 2.5 3.2 1.0 89 chrX 3509227 intron CR44999 + chrX 3509272 intron CR44999 + chrX 3509316 intron CR44999 + chrX_4_3505001 chrX_3505001 RAL-595 1166 chrX 3726770 3726797 chrX 3730167 3730194 NOF 6 3393 1.5 3.0 2.2 1.9 3424 chrX 3726770 intron tlk + chrX 3728482 intron tlk + chrX 3730194 intron tlk + chrX_6_3725001 chrX_3725001 RAL-595 1167 chrX 3842325 3842350 chrX 3842566 3842591 pogo 8 241 2.0 1.0 1.5 3.2 266 chrX 3842325 intron ec + chrX 3842458 intron ec + chrX 3842591 intron ec + chrX_8_3840001 chrX_3840001 RAL-595 1168 chrX 3863226 3863251 chrX 3863305 3863311 6 76 2.0 5.0 3.5 1.3 85 chrX 3863226 exon yin - chrX 3863268 exon yin - chrX 3863311 exon yin - chrX_6_3860001 chrX_3860001 RAL-595 1169 chrX 3874755 3874765 chrX 3874830 3874845 5 79 0.5 1.5 1.0 2.5 90 chrX 3874755 intron CG2930 + chrX 3874800 intron CG2930 + chrX 3874845 intron CG2930 + chrX_5_3870001 chrX_3870001 RAL-595 1170 chrX 4029535 4029559 chrX 4029724 4029749 17 188 2.0 3.0 2.5 4.9 214 chrX 4029535 intergenic not near genes chrX 4029642 intergenic not near genes chrX 4029749 intergenic not near genes chrX_17_4025001 chrX_4025001 RAL-595 1171 chrX 4115213 4115236 chrX 4115292 4115315 9 79 3.0 3.5 3.2 2.1 102 chrX 4115213 exon Tip60 - chrX 4115264 intron Tip60 - chrX 4115315 intron Tip60 - chrX_9_4115001 chrX_4115001 RAL-595 1172 chrX 4157896 4157913 chrX 4164949 4164966 297 4 7051 2.0 0.0 1.0 2.0 7070 chrX 4157896 intron Fas2 - chrX 4161431 intron Fas2 - chrX 4164966 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-595 1173 chrX 4436459 4436481 chrX 4436534 4436537 4 70 2.0 1.0 1.5 1.6 78 chrX 4436459 intron,intron CR32773 -,bi + chrX 4436498 intron,intron CR32773 -,bi + chrX 4436537 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-595 1174 chrX 4700395 4700426 chrX 4700737 4700769 jockey 6 342 1.5 0.0 0.8 3.3 374 chrX 4700395 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-595 1175 chrX 4723575 4723584 chrX 4723655 4723663 4 80 2.5 6.0 4.2 0.8 88 chrX 4723575 intron Proc-R + chrX 4723619 intron Proc-R + chrX 4723663 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-595 1176 chrX 4731815 4731832 chrX 4736906 4736925 jockey 7 5092 8.0 4.5 6.2 1.0 5110 chrX 4731815 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736925 intergenic not near genes chrX_7_4730001 chrX_4730001 RAL-595 1177 chrX 5122839 5122845 chrX 5123067 5123074 5 229 0.0 0.0 0.0 5.0 235 chrX 5122839 intron,intron CG15465 +,rg + chrX 5122956 intron,intron CG15465 +,rg + chrX 5123074 intron,intron CG15465 +,rg + chrX_5_5120001 chrX_5120001 RAL-595 1178 chrX 5272820 5272851 chrX 5272906 5272935 5 84 2.0 0.5 1.2 2.3 115 chrX 5272820 intergenic not near genes chrX 5272878 intergenic not near genes chrX 5272935 intergenic not near genes chrX_5_5270001 chrX_5270001 RAL-595 1179 chrX 5338712 5338735 chrX 5339964 5339988 jockey 4 1252 1.5 0.5 1.0 2.0 1276 chrX 5338712 intergenic not near genes chrX 5339350 intergenic not near genes chrX 5339988 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-595 1180 chrX 5886460 5886498 chrX 5886546 5886584 5 86 2.0 0.0 1.0 2.5 124 chrX 5886460 intron CR45668 - chrX 5886522 intron CR45668 - chrX 5886584 intron CR45668 - chrX_5_5885001 chrX_5885001 RAL-595 1181 chrX 6306552 6306570 chrX 6306629 6306647 4 70 2.0 2.0 2.0 1.3 95 chrX 6306552 3` UTR CG3823 + chrX 6306600 3` UTR CG3823 + chrX 6306647 3` UTR CG3823 + chrX_4_6305001 chrX_6305001 RAL-595 1182 chrX 6539918 6539949 chrX 6540019 6540051 4 102 0.0 1.0 0.5 2.7 133 chrX 6539918 intergenic not near genes chrX 6539984 intergenic not near genes chrX 6540051 intergenic not near genes chrX_4_6535001 chrX_6535001 RAL-595 1183 chrX 6737521 6737549 chrX 6737603 6737629 6 76 1.5 2.5 2.0 2.0 108 chrX 6737521 intron CG3168 - chrX 6737575 intron CG3168 - chrX 6737629 intron CG3168 - chrX_6_6735001 chrX_6735001 RAL-595 1184 chrX 6989507 6989521 chrX 6989594 6989608 4 87 1.5 2.0 1.8 1.4 101 chrX 6989507 intron ogre - chrX 6989558 intron ogre - chrX 6989608 intron ogre - chrX_4_6985001 chrX_6985001 RAL-595 1185 chrX 7023609 7023633 chrX 7030991 7031023 Tabor 5 7388 1.5 1.0 1.2 2.3 7414 chrX 7023609 intron CG12541 - chrX 7027316 intron CG12541 - chrX 7031023 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-595 1186 chrX 7069804 7069829 chrX 7069884 7069906 6 78 2.0 0.0 1.0 3.0 102 chrX 7069804 5` UTR CG4607 + chrX 7069855 5` UTR CG4607 + chrX 7069906 5` UTR CG4607 + chrX_6_7065001 chrX_7065001 RAL-595 1187 chrX 7125250 7125277 chrX 7134407 7134436 roo 6 9159 0.0 2.0 1.0 3.0 9186 chrX 7125250 intergenic not near genes chrX 7129843 intergenic not near genes chrX 7134436 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-595 1188 chrX 7560164 7560185 chrX 7560242 7560270 4 83 1.5 0.0 0.8 2.2 106 chrX 7560164 intergenic not near genes chrX 7560217 intergenic not near genes chrX 7560270 intergenic not near genes chrX_4_7560001 chrX_7560001 RAL-595 1189 chrX 7570640 7570668 chrX 7570774 7570802 6 134 0.0 0.5 0.2 5.0 162 chrX 7570640 intergenic not near genes chrX 7570721 intergenic not near genes chrX 7570802 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-595 1190 chrX 7702509 7702524 chrX 7702601 7702616 6 91 0.0 4.0 2.0 2.0 107 chrX 7702509 intron CHES-1-like - chrX 7702562 intron CHES-1-like - chrX 7702616 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-595 1191 chrX 7832434 7832464 chrX 7832523 7832553 6 85 0.0 1.5 0.8 3.3 119 chrX 7832434 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832553 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-595 1192 chrX 7845729 7845757 chrX 7847218 7847248 hopper2 8 1490 1.5 2.0 1.8 2.9 1519 chrX 7845729 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847248 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-595 1193 chrX 8085573 8085599 chrX 8085659 8085685 8 86 2.5 1.5 2.0 2.7 112 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085685 intron,5` UTR CG2256 -,CR45535 + chrX_8_8085001 chrX_8085001 RAL-595 1194 chrX 8305189 8305220 chrX 8305269 8305301 10 80 3.0 0.0 1.5 4.0 112 chrX 8305189 intron nAChRalpha3 - chrX 8305245 intron nAChRalpha3 - chrX 8305301 intron nAChRalpha3 - chrX_10_8305001 chrX_8305001 RAL-595 1195 chrX 8506529 8506555 chrX 8506737 8506763 5 207 0.0 0.0 0.0 5.0 234 chrX 8506529 intron CG33181 + chrX 8506646 intron CG33181 + chrX 8506763 intron CG33181 + chrX_5_8505001 chrX_8505001 RAL-595 1196 chrX 8730449 8730466 chrX 8730525 8730542 6 76 0.0 3.5 1.8 2.1 93 chrX 8730449 intergenic not near genes chrX 8730496 intergenic not near genes chrX 8730542 intergenic not near genes chrX_6_8730001 chrX_8730001 RAL-595 1197 chrX 8888643 8888657 chrX 8888720 8888734 5 77 2.0 1.0 1.5 2.0 91 chrX 8888643 intron Moe - chrX 8888688 intron Moe - chrX 8888734 intron Moe - chrX_5_8885001 chrX_8885001 RAL-595 1198 chrX 9508138 9508149 chrX 9509656 9509664 jockey 5 1517 3.0 3.5 3.2 1.2 1526 chrX 9508138 intron CG32700 - chrX 9508901 intron CG32700 - chrX 9509664 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-595 1199 chrX 9508157 9508166 chrX 9509653 9509684 jockey 4 1512 2.5 3.5 3.0 1.0 1527 chrX 9508157 intron CG32700 - chrX 9508920 intron CG32700 - chrX 9509684 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-595 1200 chrX 9575798 9575823 chrX 9576113 9576147 mdg3 16 320 2.5 3.0 2.8 4.2 349 chrX 9575798 intron,exon CG32699 -,CG42395 - chrX 9575972 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_16_9575001 chrX_9575001 RAL-595 1201 chrX 10138219 10138246 chrX 10145723 10145750 412 6 7504 2.5 0.5 1.5 2.4 7531 chrX 10138219 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145750 intron,intron RhoU +,CR44894 - chrX_6_10140001 chrX_10140001 RAL-595 1202 chrX 10177671 10177703 chrX 10177862 10177894 7 191 0.5 2.0 1.2 3.2 223 chrX 10177671 intron,intron CR44894 -,CG43902 + chrX 10177782 intron,intron CR44894 -,CG43902 + chrX 10177894 intron,intron CR44894 -,CG43902 + chrX_7_10175001 chrX_10175001 RAL-595 1203 chrX 10361713 10361743 chrX 10361807 10361840 5 96 0.5 1.5 1.0 2.5 127 chrX 10361713 intron l(1)G0289 - chrX 10361776 intron l(1)G0289 - chrX 10361840 intron l(1)G0289 - chrX_5_10360001 chrX_10360001 RAL-595 1204 chrX 10550857 10550862 chrX 10552320 10552329 hobo 4 1466 1.0 0.0 0.5 2.7 1472 chrX 10550857 intron spri - chrX 10551593 intron spri - chrX 10552329 intron spri - chrX_4_10550001 chrX_10550001 RAL-595 1205 chrX 10719135 10719151 chrX 10719219 10719235 4 83 0.0 2.5 1.2 1.8 100 chrX 10719135 intron CG32676 - chrX 10719185 intron CG32676 - chrX 10719235 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-595 1206 chrX 10933924 10933938 chrX 10934012 10934026 4 88 2.5 1.0 1.8 1.4 102 chrX 10933924 intron Myo10A + chrX 10933975 intron Myo10A + chrX 10934026 intron Myo10A + chrX_4_10930001 chrX_10930001 RAL-595 1207 chrX 11062447 11062458 chrX 11062542 11062553 4 95 1.5 0.5 1.0 2.0 106 chrX 11062447 exon CG1537 - chrX 11062500 intron CG1537 - chrX 11062553 intron CG1537 - chrX_4_11060001 chrX_11060001 RAL-595 1208 chrX 11205296 11205316 chrX 11205372 11205392 4 76 1.0 1.0 1.0 2.0 96 chrX 11205296 intergenic not near genes chrX 11205344 intergenic not near genes chrX 11205392 intergenic not near genes chrX_4_11205001 chrX_11205001 RAL-595 1209 chrX 11254169 11254203 chrX 11254280 11254314 6 111 2.5 2.0 2.2 1.9 145 chrX 11254169 intron CG44422 - chrX 11254242 intron CG44422 - chrX 11254314 intron CG44422 - chrX_6_11250001 chrX_11250001 RAL-595 1210 chrX 12173804 12173815 chrX 12173882 12173908 5 89 1.5 2.5 2.0 1.7 104 chrX 12173804 intron Ten-a + chrX 12173856 intron Ten-a + chrX 12173908 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-595 1211 chrX 12301964 12301988 chrX 12303269 12303277 X-element 4 1301 0.0 1.0 0.5 2.7 1313 chrX 12301964 intron Ten-a + chrX 12302620 intron Ten-a + chrX 12303277 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-595 1212 chrX 12350777 12350801 chrX 12350853 12350880 6 78 3.0 0.0 1.5 2.4 103 chrX 12350777 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350880 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-595 1213 chrX 12392798 12392827 chrX 12392877 12392907 14 78 3.0 2.0 2.5 4.0 109 chrX 12392798 intergenic not near genes chrX 12392852 intergenic not near genes chrX 12392907 intergenic not near genes chrX_14_12390001 chrX_12390001 RAL-595 1214 chrX 12752284 12752302 chrX 12752370 12752389 7 87 1.0 3.0 2.0 2.3 105 chrX 12752284 5` UTR CR44619 + chrX 12752336 5` UTR CR44619 + chrX 12752389 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-595 1215 chrX 12823194 12823217 chrX 12823270 12823293 4 76 3.5 1.0 2.2 1.2 99 chrX 12823194 intron Pde9 - chrX 12823244 intron Pde9 - chrX 12823293 intron Pde9 - chrX_4_12820001 chrX_12820001 RAL-595 1216 chrX 12859086 12859115 chrX 12859165 12859180 4 76 3.0 1.0 2.0 1.3 94 chrX 12859086 intron Pde9 - chrX 12859133 intron Pde9 - chrX 12859180 intron Pde9 - chrX_4_12855001 chrX_12855001 RAL-595 1217 chrX 12990754 12990764 chrX 12991037 12991051 6 288 0.5 0.5 0.5 4.0 297 chrX 12990754 intron rad + chrX 12990902 intron rad + chrX 12991051 intron rad + chrX_6_12990001 chrX_12990001 RAL-595 1218 chrX 13429469 13429494 chrX 13430616 13430643 jockey 5 1148 0.5 2.0 1.2 2.3 1174 chrX 13429469 intergenic not near genes chrX 13430056 intergenic not near genes chrX 13430643 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-595 1219 chrX 13463648 13463674 chrX 13469224 13469251 mdg3 4 5576 2.0 0.0 1.0 2.0 5603 chrX 13463648 intron Neto + chrX 13466450 intron Neto + chrX 13469251 intron Neto + chrX_4_13465001 chrX_13465001 RAL-595 1220 chrX 13471358 13471378 chrX 13471436 13471438 4 72 3.0 0.0 1.5 1.6 80 chrX 13471358 intron Neto + chrX 13471398 intron Neto + chrX 13471438 intron Neto + chrX_4_13470001 chrX_13470001 RAL-595 1221 chrX 13646225 13646248 chrX 13646310 13646333 6 83 3.0 1.0 2.0 2.0 108 chrX 13646225 intron NFAT + chrX 13646279 intron NFAT + chrX 13646333 intron NFAT + chrX_6_13645001 chrX_13645001 RAL-595 1222 chrX 14105031 14105056 chrX 14114182 14114193 roo 8 9145 3.5 4.0 3.8 1.7 9162 chrX 14105031 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114193 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-595 1223 chrX 14131497 14131519 chrX 14131578 14131600 7 79 1.0 2.5 1.8 2.5 103 chrX 14131497 intergenic not near genes chrX 14131548 intergenic not near genes chrX 14131600 intergenic not near genes chrX_7_14130001 chrX_14130001 RAL-595 1224 chrX 14163794 14163810 chrX 14167039 14167055 5 3244 8.0 6.0 7.0 0.6 3261 chrX 14163794 intergenic not near genes chrX 14165424 intergenic not near genes chrX 14167055 intergenic not near genes chrX_5_14165001 chrX_14165001 RAL-595 1225 chrX 14312095 14312113 chrX 14312250 14312273 4 158 1.0 2.5 1.8 1.4 178 chrX 14312095 intergenic not near genes chrX 14312184 intergenic not near genes chrX 14312273 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-595 1226 chrX 14484973 14484995 chrX 14485062 14485084 4 89 0.0 1.5 0.8 2.2 111 chrX 14484973 intergenic not near genes chrX 14485028 intergenic not near genes chrX 14485084 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-595 1227 chrX 14560272 14560303 chrX 14560356 14560387 7 84 3.5 1.0 2.2 2.2 115 chrX 14560272 intergenic not near genes chrX 14560330 intergenic not near genes chrX 14560387 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-595 1228 chrX 14636460 14636493 chrX 14641901 14641924 I-element 8 5438 3.0 4.0 3.5 1.8 5464 chrX 14636460 intron NetA - chrX 14639192 intron NetA - chrX 14641924 intron NetA - chrX_8_14635001 chrX_14635001 RAL-595 1229 chrX 14714055 14714062 chrX 14714137 14714144 4 81 1.5 1.5 1.5 1.6 89 chrX 14714055 intron NetB - chrX 14714100 intron NetB - chrX 14714144 intron NetB - chrX_4_14710001 chrX_14710001 RAL-595 1230 chrX 14840352 14840385 chrX 14840833 14840866 10 478 3.5 1.5 2.5 2.9 514 chrX 14840352 intron Flo2 + chrX 14840609 intron Flo2 + chrX 14840866 intron Flo2 + chrX_10_14840001 chrX_14840001 RAL-595 1231 chrX 2159854 2159857 chrX 15115025 15115034 4 12955172 8.5 6.0 7.2 0.5 12955180 chrX 2159854 exon Cyp4d1 - chrX 8637444 intron oc - chrX 15115034 exon Cyp4s3 - chrX_4_8635001 chrX_8635001 RAL-595 1232 chrX 15207666 15207684 chrX 15207749 15207767 11 82 2.5 1.0 1.8 3.9 101 chrX 15207666 intergenic not near genes chrX 15207716 intergenic not near genes chrX 15207767 intergenic not near genes chrX_11_15205001 chrX_15205001 RAL-595 1233 chrX 15212268 15212280 chrX 15212370 15212371 5 99 1.0 0.0 0.5 3.3 103 chrX 15212268 intergenic not near genes chrX 15212320 intergenic not near genes chrX 15212371 intergenic not near genes chrX_5_15210001 chrX_15210001 RAL-595 1234 chrX 15256499 15256532 chrX 15256687 15256720 12 187 0.5 6.0 3.2 2.9 221 chrX 15256499 intergenic not near genes chrX 15256610 intergenic not near genes chrX 15256720 intergenic not near genes chrX_12_15255001 chrX_15255001 RAL-595 1235 chrX 15413056 15413072 chrX 15417358 15417364 Juan 4 4300 2.0 0.5 1.2 1.8 4308 chrX 15413056 intron Cngl - chrX 15415210 intron Cngl - chrX 15417364 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-595 1236 chrX 15413074 15413085 chrX 15417353 15417387 Juan 5 4297 1.5 1.0 1.2 2.3 4313 chrX 15413074 intron Cngl - chrX 15415230 intron Cngl - chrX 15417387 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-595 1237 chrX 15435687 15435702 chrX 15436119 15436135 rover 5 433 0.0 3.0 1.5 2.0 448 chrX 15435687 intron Cngl - chrX 15435911 intron Cngl - chrX 15436135 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-595 1238 chrX 15519801 15519823 chrX 15519879 15519901 4 78 2.0 3.5 2.8 1.1 100 chrX 15519801 intron Ac13E - chrX 15519851 intron Ac13E - chrX 15519901 intron Ac13E - chrX_4_15515001 chrX_15515001 RAL-595 1239 chrX 15678058 15678064 chrX 15678117 15678141 4 72 4.0 3.5 3.8 0.8 83 chrX 15678058 intergenic CG12708 + chrX 15678100 intergenic CG12708 + chrX 15678141 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-595 1240 chrX 16329436 16329448 chrX 16329518 16329531 5 80 1.0 5.5 3.2 1.2 95 chrX 16329436 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329531 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-595 1241 chrX 16492644 16492676 chrX 16498221 16498253 mdg3 7 5577 2.0 2.0 2.0 2.3 5609 chrX 16492644 intron para - chrX 16495448 intron para - chrX 16498253 intron para - chrX_7_16495001 chrX_16495001 RAL-595 1242 chrX 16785277 16785305 chrX 16785381 16785409 5 103 0.5 0.5 0.5 3.3 132 chrX 16785277 3` UTR CG9609 - chrX 16785343 3` UTR CG9609 - chrX 16785409 3` UTR CG9609 - chrX_5_16785001 chrX_16785001 RAL-595 1243 chrX 16833214 16833222 chrX 16833299 16833306 5 84 4.5 0.0 2.2 1.6 92 chrX 16833214 intron CG13004 - chrX 16833260 intron CG13004 - chrX 16833306 intron CG13004 - chrX_5_16830001 chrX_16830001 RAL-595 1244 chrX 17011970 17011998 chrX 17012052 17012074 5 81 2.5 2.0 2.2 1.6 104 chrX 17011970 intron CG45002 - chrX 17012022 intron CG45002 - chrX 17012074 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-595 1245 chrX 17556941 17556953 chrX 17557440 17557452 mdg1 8 498 3.5 5.0 4.2 1.5 511 chrX 17556941 intron CG43658 - chrX 17557196 intron CG43658 - chrX 17557452 intron CG43658 - chrX_8_17555001 chrX_17555001 RAL-595 1246 chrX 17680898 17680918 chrX 17680975 17680994 6 77 2.5 1.5 2.0 2.0 96 chrX 17680898 intron chas - chrX 17680946 intron chas - chrX 17680994 intron chas - chrX_6_17680001 chrX_17680001 RAL-595 1247 chrX 17792953 17792981 chrX 17796251 17796276 flea 4 3297 2.0 2.5 2.2 1.2 3323 chrX 17792953 intron OdsH + chrX 17794614 intron OdsH + chrX 17796276 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-595 1248 chrX 17879654 17879676 chrX 17879760 17879782 6 104 0.5 2.5 1.5 2.4 128 chrX 17879654 intron mnb - chrX 17879718 intron mnb - chrX 17879782 intron mnb - chrX_6_17875001 chrX_17875001 RAL-595 1249 chrX 18122819 18122847 chrX 18122895 18122923 6 76 1.5 4.0 2.8 1.6 104 chrX 18122819 5` UTR CR45606 + chrX 18122871 5` UTR CR45606 + chrX 18122923 intergenic CR45606 + chrX_6_18120001 chrX_18120001 RAL-595 1250 chrX 18194072 18194105 chrX 18194607 18194640 BS 8 534 0.0 2.0 1.0 4.0 568 chrX 18194072 intron Frq2 + chrX 18194356 intron Frq2 + chrX 18194640 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-595 1251 chrX 18427384 18427398 chrX 18427795 18427809 9 411 2.0 2.0 2.0 3.0 425 chrX 18427384 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427809 intergenic not near genes chrX_9_18425001 chrX_18425001 RAL-595 1252 chrX 18467237 18467256 chrX 18467401 18467420 11 162 1.0 4.0 2.5 3.1 183 chrX 18467237 intron CG32547 - chrX 18467328 intron CG32547 - chrX 18467420 intron CG32547 - chrX_11_18465001 chrX_18465001 RAL-595 1253 chrX 18694983 18694989 chrX 18695068 18695087 5 98 2.0 3.0 2.5 1.4 104 chrX 18694983 intergenic not near genes chrX 18695035 intergenic not near genes chrX 18695087 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-595 1254 chrX 19097527 19097550 chrX 19097604 19097627 4 70 0.5 2.0 1.2 1.8 100 chrX 19097527 intergenic not near genes chrX 19097577 intergenic not near genes chrX 19097627 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-595 1255 chrX 19176209 19176239 chrX 19176292 19176323 11 83 0.5 3.5 2.0 3.7 114 chrX 19176209 3` UTR CG7556 - chrX 19176266 3` UTR CG7556 - chrX 19176323 3` UTR CG7556 - chrX_11_19175001 chrX_19175001 RAL-595 1256 chrX 13057298 13057300 chrX 19242812 19242814 4 6185514 0.0 3.0 1.5 1.6 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-595 1257 chrX 19357000 19357017 chrX 19358441 19358458 NOF 4 1441 1.5 0.0 0.8 2.2 1458 chrX 19357000 intron kek5 + chrX 19357729 intron kek5 + chrX 19358458 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-595 1258 chrX 19380156 19380184 chrX 19380397 19380425 pogo 5 241 2.0 0.5 1.2 2.3 269 chrX 19380156 intron kek5 + chrX 19380290 intron kek5 + chrX 19380425 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-595 1259 chrX 19662038 19662049 chrX 19662260 19662272 5 223 4.0 1.5 2.8 1.3 234 chrX 19662038 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662272 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-595 1260 chrX 19883785 19883796 chrX 19883869 19883875 6 83 1.0 6.5 3.8 1.2 90 chrX 19883785 intron Hers + chrX 19883830 intron Hers + chrX 19883875 intron Hers + chrX_6_19880001 chrX_19880001 RAL-595 1261 chrX 19897381 19897403 chrX 19897458 19897480 5 76 1.0 0.5 0.8 2.8 99 chrX 19897381 intron Hers + chrX 19897430 intron Hers + chrX 19897480 intron Hers + chrX_5_19895001 chrX_19895001 RAL-595 1262 chrX 19971797 19971819 chrX 19971952 19971974 5 155 2.5 3.0 2.8 1.3 177 chrX 19971797 intergenic not near genes chrX 19971886 intergenic not near genes chrX 19971974 intergenic not near genes chrX_5_19970001 chrX_19970001 RAL-595 1263 chrX 19987205 19987232 chrX 19987743 19987770 6 535 1.0 4.5 2.8 1.6 565 chrX 19987205 intergenic not near genes chrX 19987488 intergenic not near genes chrX 19987770 intergenic not near genes chrX_6_19985001 chrX_19985001 RAL-595 1264 chrX 20312883 20312901 chrX 20312961 20312979 4 75 3.5 2.5 3.0 1.0 96 chrX 20312883 intron CG1504 - chrX 20312931 intron CG1504 - chrX 20312979 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-595 1265 chrX 20369319 20369341 chrX 20369403 20369406 8 82 1.0 3.0 2.0 2.7 87 chrX 20369319 intergenic not near genes chrX 20369362 intergenic not near genes chrX 20369406 intergenic not near genes chrX_8_20365001 chrX_20365001 RAL-595 1266 chrX 20377326 20377349 chrX 20378792 20378816 hobo 9 1466 5.0 2.5 3.8 1.9 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-595 1267 chrX 20383792 20383827 chrX 20383893 20383928 9 101 0.5 2.5 1.5 3.6 136 chrX 20383792 intergenic not near genes chrX 20383860 intergenic not near genes chrX 20383928 intergenic not near genes chrX_9_20380001 chrX_20380001 RAL-595 1268 chrX 20384253 20384286 chrX 20384336 20384369 5 83 1.5 2.0 1.8 1.8 116 chrX 20384253 intergenic not near genes chrX 20384311 intergenic not near genes chrX 20384369 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-595 1269 chrX 20499158 20499185 chrX 20499240 20499268 6 81 2.5 2.5 2.5 1.7 110 chrX 20499158 intron RhoGAP19D - chrX 20499213 intron RhoGAP19D - chrX 20499268 intron RhoGAP19D - chrX_6_20495001 chrX_20495001 RAL-595 1270 chrX 20504142 20504151 chrX 20505646 20505672 transib2 7 1517 1.5 0.5 1.0 3.5 1530 chrX 20504142 intron RhoGAP19D - chrX 20504907 intron RhoGAP19D - chrX 20505672 intron RhoGAP19D - chrX_7_20500001 chrX_20500001 RAL-595 1271 chrX 9181405 9181407 chrX 20533061 20533067 4 11351657 1.0 5.0 3.0 1.0 11351662 chrX 9181405 3` UTR mei-P26 + chrX 14857236 intron Flo2 + chrX 20533067 intergenic not near genes chrX_4_14855001 chrX_14855001 RAL-595 1272 chrX 20940730 20940755 chrX 20942187 20942211 hobo 7 1465 1.0 0.5 0.8 3.9 1481 chrX 20940730 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942211 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-595 1273 chrX 21040453 21040488 chrX 21045371 21045406 7 4919 18.5 16.0 17.2 0.4 4953 chrX 21040453 3` UTR,5` UTR Ntf-2 +,CG15449 - chrX 21042930 intron Mgstl + chrX 21045406 intron Cbs + chrX_7_21040001 chrX_21040001 RAL-595 1274 chrX 21076326 21076357 chrX 21076405 21076436 4 79 0.0 0.0 0.0 4.0 110 chrX 21076326 intron bves + chrX 21076381 intron bves + chrX 21076436 intron bves + chrX_4_21075001 chrX_21075001 RAL-595 1275 chrX 21403847 21403868 chrX 21403928 21403936 9 79 2.0 2.5 2.2 2.8 89 chrX 21403847 intergenic not near genes chrX 21403892 intergenic not near genes chrX 21403936 intergenic not near genes chrX_9_21400001 chrX_21400001 RAL-595 1276 chrX 21407826 21407846 chrX 21407943 21407963 7 114 1.0 2.5 1.8 2.5 137 chrX 21407826 intergenic not near genes chrX 21407894 intergenic not near genes chrX 21407963 intergenic not near genes chrX_7_21405001 chrX_21405001 RAL-595 1277 chrX 21455232 21455406 chrX 21455404 21455524 4 147 0.0 0.0 0.0 4.0 292 chrX 21455232 intron CG42343 - chrX 21455378 intron CG42343 - chrX 21455524 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-595 1278 chrX 22535094 22535116 chrX 22535174 22535193 4 79 1.5 0.0 0.8 2.2 99 chrX 22535094 intron,3` UTR,3` UTR CG17600 +,S6kII +,CG17598 - chrX 22535144 intron,3` UTR,3` UTR CG17600 +,S6kII +,CG17598 - chrX 22535193 intron,3` UTR,3` UTR CG17600 +,S6kII +,CG17598 - chrX_4_22535001 chrX_22535001 RAL-595 1279 chrX 22764374 22764389 chrX 22764470 22764485 9 95 0.5 0.5 0.5 6.0 111 chrX 22764374 intron CR44997 + chrX 22764430 intron CR44997 + chrX 22764485 intron CR44997 + chrX_9_22760001 chrX_22760001 RAL-595 1280 chrX 22771516 22771535 chrX 22774807 22774826 297 4 3290 3.0 2.0 2.5 1.1 3310 chrX 22771516 intron CR44997 + chrX 22773171 intron CR44997 + chrX 22774826 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-595 1281 chrX 22895730 22895751 chrX 22895848 22895868 7 118 2.5 1.0 1.8 2.5 138 chrX 22895730 intergenic not near genes chrX 22895799 intergenic not near genes chrX 22895868 intergenic not near genes chrX_7_22895001 chrX_22895001 RAL-595 1282 chrX 22996308 22996334 chrX 23003542 23003568 roo 7 7233 3.0 1.5 2.2 2.2 7260 chrX 22996308 intron,intron stnA -,stnB - chrX 22999938 intron,intron stnA -,stnB - chrX 23003568 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-595 1283 chrY 975617 975806 chrY 975734 975874 6 156 95.0 87.0 91.0 0.1 257 chrY 975617 intergenic not near genes chrY 975746 intergenic not near genes chrY 975874 intergenic not near genes chrY_6_975001 chrY_975001 RAL-595