SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 2 chr2L 47442 47456 chr2L 52572 52585 jockey 4 5130 2.5 2.0 2.2 1.2 5143 chr2L 47442 intron Cda5 - chr2L 50014 intron Cda5 - chr2L 52585 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-57 4 chr2L 347878 347909 chr2L 355402 355434 blood 5 7525 1.5 0.5 1.0 2.5 7556 chr2L 347878 3` UTR Plc21C + chr2L 351656 intron Plc21C + chr2L 355434 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-57 8 chr2L 686913 686952 chr2L 695978 696017 roo 4 9064 3.0 3.0 3.0 1.0 9104 chr2L 686913 intron ds - chr2L 691465 intron ds - chr2L 696017 intron ds - chr2L_4_690001 chr2L_690001 RAL-57 18 chr2L 976853 976870 chr2L 984514 984531 roo 11 7661 8.5 0.0 4.2 2.1 7678 chr2L 976853 intergenic not near genes chr2L 980692 intergenic not near genes chr2L 984531 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-57 27 chr2L 1220106 1220141 chr2L 1227597 1227631 blood 6 7490 8.5 2.0 5.2 1.0 7525 chr2L 1220106 intron CG42329 + chr2L 1223868 intron CG42329 + chr2L 1227631 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-57 32 chr2L 1570670 1570719 chr2L 1573567 1573616 F-element 4 2896 1.5 2.0 1.8 1.4 2946 chr2L 1570670 intron haf + chr2L 1572143 intron haf + chr2L 1573616 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-57 33 chr2L 1711336 1711355 chr2L 1711685 1711704 mdg3 19 348 29.0 24.0 26.5 0.7 368 chr2L 1711336 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711520 3` UTR frtz - chr2L 1711704 3` UTR frtz - chr2L_19_1710001 chr2L_1710001 RAL-57 34 chr2L 1711359 1711387 chr2L 1711679 1711732 mdg3 25 342 13.0 19.0 16.0 1.5 373 chr2L 1711359 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711546 3` UTR frtz - chr2L 1711732 3` UTR frtz - chr2L_25_1710001 chr2L_1710001 RAL-57 47 chr2L 2112086 2112146 chr2L 2119773 2119776 opus 8 7672 1.0 3.0 2.0 2.7 7690 chr2L 2112086 intergenic not near genes chr2L 2115931 intergenic not near genes chr2L 2119776 intergenic not near genes chr2L_8_2115001 chr2L_2115001 RAL-57 49 chr2L 2294060 2294073 chr2L 2299246 2299303 copia 5 5211 3.0 4.0 3.5 1.1 5243 chr2L 2294060 intergenic not near genes chr2L 2296682 intergenic not near genes chr2L 2299303 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-57 53 chr2L 2565529 2565559 chr2L 2571627 2571657 297 17 6097 8.5 10.0 9.2 1.7 6128 chr2L 2565529 exon Cyp309a2 - chr2L 2568593 intron Cyp309a2 - chr2L 2571657 exon Cyp309a2 - chr2L_17_2565001 chr2L_2565001 RAL-57 59 chr2L 2772591 2772625 chr2L 2779200 2779232 297 12 6608 7.0 8.0 7.5 1.4 6641 chr2L 2772591 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779232 3` UTR Syt1 - chr2L_12_2775001 chr2L_2775001 RAL-57 62 chr2L 2933278 2933309 chr2L 2935478 2935511 pogo 4 2201 4.5 1.5 3.0 1.0 2233 chr2L 2933278 intron lilli + chr2L 2934394 intron lilli + chr2L 2935511 intron lilli + chr2L_4_2930001 chr2L_2930001 RAL-57 63 chr2L 3073010 3073051 chr2L 3078238 3078279 copia 12 5228 8.0 10.0 9.0 1.2 5269 chr2L 3073010 intron toc - chr2L 3075644 intron toc - chr2L 3078279 intron toc - chr2L_12_3075001 chr2L_3075001 RAL-57 68 chr2L 3251489 3251521 chr2L 3259079 3259111 springer 7 7590 0.5 4.5 2.5 2.0 7622 chr2L 3251489 intergenic not near genes chr2L 3255300 intergenic not near genes chr2L 3259111 intergenic not near genes chr2L_7_3255001 chr2L_3255001 RAL-57 88 chr2L 4601688 4601734 chr2L 4609154 4609200 mdg1 12 7466 4.0 3.5 3.8 2.5 7512 chr2L 4601688 intron dp - chr2L 4605444 intron dp - chr2L 4609200 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-57 89 chr2L 4661825 4661855 chr2L 4669430 4669460 opus 8 7605 3.0 4.0 3.5 1.8 7635 chr2L 4661825 intergenic not near genes chr2L 4665642 intergenic not near genes chr2L 4669460 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-57 97 chr2L 4918156 4918193 chr2L 4923254 4923291 jockey 9 5098 3.0 8.5 5.8 1.3 5135 chr2L 4918156 intron hoe1 - chr2L 4920724 intron hoe1 - chr2L 4923291 intron hoe1 - chr2L_9_4920001 chr2L_4920001 RAL-57 99 chr2L 4953489 4953495 chr2L 4953755 4953761 pogo 5 266 26.5 6.5 16.5 0.3 272 chr2L 4953489 intergenic Jon25Bii - chr2L 4953625 intergenic Jon25Bii - chr2L 4953761 intergenic not near genes chr2L_5_4950001 chr2L_4950001 RAL-57 100 chr2L 4953497 4953539 chr2L 4953754 4953776 pogo 23 262 11.0 6.0 8.5 2.4 279 chr2L 4953497 intergenic Jon25Bii - chr2L 4953636 intergenic Jon25Bii - chr2L 4953776 intergenic not near genes chr2L_23_4950001 chr2L_4950001 RAL-57 105 chr2L 5342760 5342766 chr2L 5345165 5345171 Doc 4 2405 8.0 5.0 6.5 0.5 2411 chr2L 5342760 intergenic not near genes chr2L 5343966 intergenic not near genes chr2L 5345171 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-57 106 chr2L 5342767 5342797 chr2L 5345161 5345200 Doc 11 2403 4.5 5.0 4.8 1.9 2433 chr2L 5342767 intergenic not near genes chr2L 5343984 intergenic not near genes chr2L 5345200 intergenic not near genes chr2L_11_5340001 chr2L_5340001 RAL-57 117 chr2L 5827701 5827729 chr2L 5836734 5836749 roo 7 9030 4.0 2.5 3.2 1.7 9048 chr2L 5827701 intron TrissinR + chr2L 5832225 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-57 131 chr2L 6279633 6279644 chr2L 6279737 6279748 INE-1 4 104 5.5 1.0 3.2 1.0 115 chr2L 6279633 intron Ddr + chr2L 6279690 intron Ddr + chr2L 6279748 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-57 136 chr2L 6363135 6363181 chr2L 6366082 6366123 Burdock 11 2946 9.0 5.0 7.0 1.4 2988 chr2L 6363135 intergenic not near genes chr2L 6364629 intergenic not near genes chr2L 6366123 intergenic not near genes chr2L_11_6360001 chr2L_6360001 RAL-57 137 chr2L 6426835 6426885 chr2L 6445120 6445154 roo 26 18284 7.0 10.5 8.8 2.7 18319 chr2L 6426835 3` UTR CG9527 - chr2L 6435994 intron CG9527 - chr2L 6445154 exon CG9527 - chr2L_26_6435001 chr2L_6435001 RAL-57 149 chr2L 6876784 6876810 chr2L 6882967 6883024 diver 6 6194 6.5 4.0 5.2 1.0 6240 chr2L 6876784 intron Nlg2 + chr2L 6879904 intron Nlg2 + chr2L 6883024 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-57 161 chr2L 7343302 7343358 chr2L 7350443 7350493 roo 21 7137 7.0 7.5 7.2 2.6 7191 chr2L 7343302 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350493 intron Wnt6 + chr2L_21_7345001 chr2L_7345001 RAL-57 170 chr2L 7959027 7959072 chr2L 7960462 7960510 pogo 8 1436 3.0 0.5 1.8 2.9 1483 chr2L 7959027 intron Snoo - chr2L 7959768 intron Snoo - chr2L 7960510 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-57 171 chr2L 7977064 7977113 chr2L 7984065 7984097 297 19 6998 5.5 5.5 5.5 2.9 7033 chr2L 7977064 intron Snoo - chr2L 7980580 intron Snoo - chr2L 7984097 intron,5` UTR Snoo -,CG7231 + chr2L_19_7980001 chr2L_7980001 RAL-57 173 chr2L 8013594 8013603 chr2L 8018823 8018832 copia 4 5229 10.0 0.0 5.0 0.7 5238 chr2L 8013594 intron Tg + chr2L 8016213 intron Tg + chr2L 8018832 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-57 184 chr2L 8452404 8452432 chr2L 8461600 8461626 roo 8 9196 4.5 4.0 4.2 1.5 9222 chr2L 8452404 intron fu12 - chr2L 8457015 intron fu12 - chr2L 8461626 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-57 193 chr2L 8723099 8723148 chr2L 8731501 8731534 Tirant 8 8398 0.5 3.0 1.8 2.9 8435 chr2L 8723099 intron raw - chr2L 8727316 intron raw - chr2L 8731534 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-57 200 chr2L 9000257 9000308 chr2L 9007792 9007842 roo 22 7535 8.5 5.5 7.0 2.8 7585 chr2L 9000257 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007842 intergenic not near genes chr2L_22_9000001 chr2L_9000001 RAL-57 212 chr2L 9393474 9393489 chr2L 9396466 9396481 jockey 5 2991 8.5 3.5 6.0 0.7 3007 chr2L 9393474 intron Shawl - chr2L 9394978 intron Shawl - chr2L 9396481 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-57 213 chr2L 9393501 9393520 chr2L 9396491 9396508 jockey 4 2990 5.0 7.0 6.0 0.6 3007 chr2L 9393501 intron Shawl - chr2L 9395004 intron Shawl - chr2L 9396508 intron Shawl - chr2L_4_9395001 chr2L_9395001 RAL-57 220 chr2L 9973703 9973754 chr2L 9980847 9980898 HMS-Beagle 17 7136 3.0 6.0 4.5 3.1 7195 chr2L 9973703 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980898 intergenic not near genes chr2L_17_9975001 chr2L_9975001 RAL-57 243 chr2L 10862846 10862853 chr2L 10864471 10864491 Rt1c 6 1636 13.5 14.0 13.8 0.4 1645 chr2L 10862846 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864491 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-57 244 chr2L 10862854 10862875 chr2L 10864457 10864458 Rt1c 11 1613 9.0 9.0 9.0 1.1 1604 chr2L 10862854 3` UTR CR43807 - chr2L 10863656 intron CR43807 - chr2L 10864458 intron CR43807 - chr2L_11_10860001 chr2L_10860001 RAL-57 247 chr2L 10946950 10946975 chr2L 10956185 10956198 roo 7 9236 1.5 2.5 2.0 2.3 9248 chr2L 10946950 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956198 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-57 254 chr2L 11315244 11315267 chr2L 11317673 11317696 G2 6 2429 3.5 3.0 3.2 1.4 2452 chr2L 11315244 intergenic not near genes chr2L 11316470 intergenic not near genes chr2L 11317696 intergenic not near genes chr2L_6_11315001 chr2L_11315001 RAL-57 259 chr2L 11540586 11540609 chr2L 11548013 11548036 Tabor 4 7427 2.5 4.0 3.2 1.0 7450 chr2L 11540586 intergenic not near genes chr2L 11544311 intergenic not near genes chr2L 11548036 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-57 260 chr2L 11614054 11614084 chr2L 11615547 11615564 hopper2 5 1489 2.0 3.0 2.5 1.4 1510 chr2L 11614054 intron kek2 + chr2L 11614809 intron kek2 + chr2L 11615564 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-57 268 chr2L 12067321 12067358 chr2L 12074398 12074435 297 15 7077 4.5 7.0 5.8 2.2 7114 chr2L 12067321 intergenic not near genes chr2L 12070878 intergenic not near genes chr2L 12074435 intergenic not near genes chr2L_15_12070001 chr2L_12070001 RAL-57 280 chr2L 12739158 12739199 chr2L 12743964 12744005 Doc 12 4806 3.5 4.0 3.8 2.5 4847 chr2L 12739158 exon MRP + chr2L 12741582 intron MRP + chr2L 12744005 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-57 282 chr2L 12791586 12791630 chr2L 12795286 12795320 F-element 6 3694 0.0 1.5 0.8 3.3 3734 chr2L 12791586 intergenic not near genes chr2L 12793453 intergenic not near genes chr2L 12795320 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-57 283 chr2L 12933827 12933875 chr2L 12941319 12941358 blood 8 7490 2.0 1.5 1.8 2.9 7531 chr2L 12933827 intergenic not near genes chr2L 12937592 intergenic not near genes chr2L 12941358 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-57 284 chr2L 13036224 13036266 chr2L 13036491 13036533 X-element 7 267 3.5 3.0 3.2 1.7 309 chr2L 13036224 intron CG9932 - chr2L 13036378 intron CG9932 - chr2L 13036533 intron CG9932 - chr2L_7_13035001 chr2L_13035001 RAL-57 291 chr2L 13405627 13405645 chr2L 13410447 13410466 Doc 15 4820 19.0 10.5 14.8 0.9 4839 chr2L 13405627 exon CG7110 + chr2L 13408046 intron CG7110 + chr2L 13410466 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-57 292 chr2L 13405648 13405678 chr2L 13410446 13410500 Doc 40 4820 7.5 10.5 9.0 4.0 4852 chr2L 13405648 exon CG7110 + chr2L 13408074 intron CG7110 + chr2L 13410500 intron CG7110 + chr2L_40_13405001 chr2L_13405001 RAL-57 293 chr2L 13449442 13449494 chr2L 13456903 13456955 Quasimodo 33 7461 6.0 14.0 10.0 3.0 7513 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456955 intron CG42784 + chr2L_33_13450001 chr2L_13450001 RAL-57 294 chr2L 13481438 13481466 chr2L 13482064 13482089 jockey 9 630 7.0 4.0 5.5 1.4 651 chr2L 13481438 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482089 intron CG42784 + chr2L_9_13480001 chr2L_13480001 RAL-57 295 chr2L 13522109 13522161 chr2L 13527652 13527704 Transpac 5 5543 0.5 4.0 2.2 1.6 5595 chr2L 13522109 intron B4 - chr2L 13524906 intron B4 - chr2L 13527704 intron B4 - chr2L_5_13520001 chr2L_13520001 RAL-57 297 chr2L 13560381 13560416 chr2L 13565227 13565260 F-element 9 4846 5.0 3.5 4.2 1.7 4879 chr2L 13560381 intron kuz + chr2L 13562820 intron kuz + chr2L 13565260 intron kuz + chr2L_9_13560001 chr2L_13560001 RAL-57 303 chr2L 13761784 13761825 chr2L 13762920 13762961 Doc 8 1135 1.5 2.5 2.0 2.7 1177 chr2L 13761784 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762961 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-57 305 chr2L 13853070 13853111 chr2L 13862245 13862286 roo 6 9175 2.0 1.5 1.8 2.1 9216 chr2L 13853070 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862286 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-57 317 chr2L 14642550 14642598 chr2L 14651738 14651786 roo 27 9187 11.0 7.0 9.0 2.7 9236 chr2L 14642550 intron osp - chr2L 14647168 intron osp - chr2L 14651786 intron osp - chr2L_27_14645001 chr2L_14645001 RAL-57 322 chr2L 14803887 14803904 chr2L 14809111 14809132 copia 4 5222 2.0 1.5 1.8 1.4 5245 chr2L 14803887 intergenic not near genes chr2L 14806510 intergenic not near genes chr2L 14809132 intergenic not near genes chr2L_4_14805001 chr2L_14805001 RAL-57 326 chr2L 14889935 14889982 chr2L 14890385 14890432 jockey 4 450 2.0 0.5 1.2 1.8 497 chr2L 14889935 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890432 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-57 331 chr2L 14984365 14984393 chr2L 14991992 14992020 opus 4 7627 2.5 1.5 2.0 1.3 7655 chr2L 14984365 intron mol - chr2L 14988192 intron mol - chr2L 14992020 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-57 345 chr2L 15446030 15446064 chr2L 15453524 15453558 blood 6 7494 5.0 2.5 3.8 1.2 7528 chr2L 15446030 intergenic not near genes chr2L 15449794 intergenic not near genes chr2L 15453558 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-57 347 chr2L 15586388 15586440 chr2L 15593465 15593517 297 8 7077 2.5 3.5 3.0 2.0 7129 chr2L 15586388 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593517 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-57 363 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 163 145889 11.0 15.5 13.2 11.5 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_163_16140001 chr2L_16140001 RAL-57 366 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 110 145889 11.0 15.5 13.2 7.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_110_16140001 chr2L_16140001 RAL-57 369 chr2L 16280237 16280286 chr2L 16281425 16281460 1360 16 1184 3.0 5.0 4.0 3.2 1223 chr2L 16280237 intron crp - chr2L 16280848 intron crp - chr2L 16281460 intron crp - chr2L_16_16280001 chr2L_16280001 RAL-57 374 chr2L 16511938 16511992 chr2L 16519077 16519131 HMS-Beagle 24 7139 4.0 6.5 5.2 3.9 7193 chr2L 16511938 intron CG5953 - chr2L 16515534 intron CG5953 - chr2L 16519131 intron CG5953 - chr2L_24_16515001 chr2L_16515001 RAL-57 384 chr2L 16958081 16958127 chr2L 16962894 16962936 Doc 4 4812 2.0 1.0 1.5 1.6 4855 chr2L 16958081 intergenic not near genes chr2L 16960508 intergenic not near genes chr2L 16962936 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-57 395 chr2L 17273174 17273206 chr2L 17277982 17278014 F-element 5 4806 2.5 3.0 2.8 1.3 4840 chr2L 17273174 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17278014 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-57 398 chr2L 17432013 17432032 chr2L 17432143 17432163 1360 5 131 0.0 3.5 1.8 1.8 150 chr2L 17432013 intron Dif - chr2L 17432088 intron Dif - chr2L 17432163 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-57 409 chr2L 17819901 17819949 chr2L 17825129 17825177 copia 16 5227 5.0 6.5 5.8 2.4 5276 chr2L 17819901 intron CadN2 - chr2L 17822539 intron CadN2 - chr2L 17825177 intron CadN2 - chr2L_16_17820001 chr2L_17820001 RAL-57 411 chr2L 17951927 17951977 chr2L 17953419 17953469 hobo 15 1492 6.5 3.0 4.8 2.6 1542 chr2L 17951927 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953469 intergenic not near genes chr2L_15_17950001 chr2L_17950001 RAL-57 414 chr2L 18051860 18051883 chr2L 18061029 18061055 roo 8 9170 6.5 3.0 4.8 1.4 9195 chr2L 18051860 intron rdo + chr2L 18056458 intron rdo + chr2L 18061055 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-57 433 chr2L 19147346 19147398 chr2L 19154406 19154445 297 7 7054 1.0 2.0 1.5 2.8 7099 chr2L 19147346 intron brat + chr2L 19150896 intron brat + chr2L 19154445 intron brat + chr2L_7_19150001 chr2L_19150001 RAL-57 439 chr2L 19345005 19345032 chr2L 19357239 19357266 blood 5 12234 1.0 2.0 1.5 2.0 12261 chr2L 19345005 intron dnt - chr2L 19351136 intron dnt - chr2L 19357266 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-57 449 chr2L 19620078 19620131 chr2L 19621092 19621133 jockey 9 1009 1.5 1.0 1.2 4.1 1055 chr2L 19620078 intron Lar + chr2L 19620606 intron Lar + chr2L 19621133 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-57 451 chr2L 19652554 19652576 chr2L 19674015 19674037 opus 4 21461 4.5 1.0 2.8 1.1 21483 chr2L 19652554 intron Lar + chr2L 19663296 intron Lar + chr2L 19674037 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-57 452 chr2L 19703516 19703570 chr2L 19712676 19712702 roo 20 9157 5.0 7.0 6.0 2.9 9186 chr2L 19703516 intron Lar + chr2L 19708109 intron Lar + chr2L 19712702 intron Lar + chr2L_20_19705001 chr2L_19705001 RAL-57 453 chr2L 19737352 19737384 chr2L 19740831 19740853 1360 10 3472 4.0 3.5 3.8 2.1 3501 chr2L 19737352 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_10_19735001 chr2L_19735001 RAL-57 454 chr2L 19762782 19762838 chr2L 19763049 19763105 pogo 17 264 7.0 2.5 4.8 2.9 323 chr2L 19762782 exon fbp - chr2L 19762944 intron fbp - chr2L 19763105 intron fbp - chr2L_17_19760001 chr2L_19760001 RAL-57 463 chr2L 20005855 20005898 chr2L 20010956 20010999 flea 4 5101 2.0 3.0 2.5 1.1 5144 chr2L 20005855 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20010999 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-57 469 chr2L 20272090 20272143 chr2L 20282826 20282878 copia 24 10735 6.5 9.0 7.8 2.7 10788 chr2L 20272090 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282878 intergenic not near genes chr2L_24_20275001 chr2L_20275001 RAL-57 470 chr2L 20303166 20303186 chr2L 20310654 20310679 blood 10 7492 0.0 10.0 5.0 1.7 7513 chr2L 20303166 intergenic not near genes chr2L 20306922 intergenic not near genes chr2L 20310679 intergenic not near genes chr2L_10_20305001 chr2L_20305001 RAL-57 473 chr2L 20372206 20372240 chr2L 20372472 20372506 pogo 9 266 0.5 4.5 2.5 2.6 300 chr2L 20372206 intergenic Ugt37a1 - chr2L 20372356 intergenic Ugt37a1 - chr2L 20372506 exon Ugt37a1 - chr2L_9_20370001 chr2L_20370001 RAL-57 474 chr2L 20407784 20407790 chr2L 20412926 20412947 flea 5 5150 11.0 5.0 8.0 0.6 5163 chr2L 20407784 intron CG10947 - chr2L 20410366 intron CG10947 - chr2L 20412947 intron CG10947 - chr2L_5_20410001 chr2L_20410001 RAL-57 479 chr2L 20576216 20576236 chr2L 20583709 20583729 blood 4 7492 1.0 4.5 2.8 1.1 7513 chr2L 20576216 intergenic CR45347 + chr2L 20579972 intergenic not near genes chr2L 20583729 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-57 486 chr2L 20835788 20835831 chr2L 20836530 20836572 Quasimodo 9 742 2.5 2.5 2.5 2.6 784 chr2L 20835788 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836572 intergenic Spn38F - chr2L_9_20835001 chr2L_20835001 RAL-57 489 chr2L 20901434 20901460 chr2L 20902623 20902649 1360 4 1189 1.5 2.5 2.0 1.3 1215 chr2L 20901434 intron,intron CG43739 -,sky - chr2L 20902042 intron,intron CG43739 -,sky - chr2L 20902649 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-57 491 chr2L 21020258 21020292 chr2L 21023960 21023992 NOF 8 3698 2.0 3.5 2.8 2.1 3734 chr2L 21020258 intron CG42238 - chr2L 21022125 intron CG42238 - chr2L 21023992 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-57 498 chr2L 21347528 21347565 chr2L 21355024 21355062 blood 4 7497 1.0 1.5 1.2 1.8 7534 chr2L 21347528 intron Tsp39D + chr2L 21351295 intron Tsp39D + chr2L 21355062 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-57 503 chr2L 21981680 21981702 chr2L 21990870 21990892 roo 4 9188 1.0 2.0 1.5 1.6 9212 chr2L 21981680 exon CG2528 - chr2L 21986286 intron CG2528 - chr2L 21990892 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-57 508 chr2L 22258600 22258643 chr2L 22260745 22260792 G6 29 2149 8.5 9.0 8.8 3.0 2192 chr2L 22258600 intergenic Tif-IA + chr2L 22259696 intergenic not near genes chr2L 22260792 intergenic not near genes chr2L_29_22255001 chr2L_22255001 RAL-57 511 chr2L 22776395 22776452 chr2L 22778209 22778264 S-element 12 1814 2.0 2.0 2.0 4.0 1869 chr2L 22776395 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778264 intergenic not near genes chr2L_12_22775001 chr2L_22775001 RAL-57 515 chr2R 1516583 1516600 chr2R 1521336 1521353 1731 4 4753 10.5 7.0 8.8 0.4 4770 chr2R 1516583 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521353 5` UTR Maf1 - chr2R_4_1515001 chr2R_1515001 RAL-57 516 chr2R 2110479 2110499 chr2R 2118062 2118082 17.6 12 7583 6.5 3.0 4.8 2.1 7603 chr2R 2110479 intron CG17684 - chr2R 2114280 intron CG17684 - chr2R 2118082 intron CG17684 - chr2R_12_2110001 chr2R_2110001 RAL-57 517 chr2R 2498980 2499014 chr2R 2508152 2508186 roo 4 9172 1.0 1.0 1.0 2.0 9206 chr2R 2498980 intron MFS17 - chr2R 2503583 intron MFS17 - chr2R 2508186 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-57 519 chr2R 4622940 4622985 chr2R 4624115 4624125 1360 5 1173 2.0 1.5 1.8 1.8 1185 chr2R 4622940 intergenic CR44101 - chr2R 4623532 intergenic not near genes chr2R 4624125 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-57 521 chr2R 4838849 4838900 chr2R 4840396 4840448 transib2 16 1547 9.0 12.0 10.5 1.4 1599 chr2R 4838849 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840448 intergenic not near genes chr2R_16_4835001 chr2R_4835001 RAL-57 522 chr2R 4870719 4870739 chr2R 4871255 4871275 R1A1-element 11 536 7.5 8.0 7.8 1.2 556 chr2R 4870719 intergenic not near genes chr2R 4870997 intergenic not near genes chr2R 4871275 intergenic not near genes chr2R_11_4870001 chr2R_4870001 RAL-57 526 chr2R 5417986 5418014 chr2R 5420643 5420669 Burdock 5 2656 1.5 2.0 1.8 1.8 2683 chr2R 5417986 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420669 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-57 534 chr2R 5869257 5869304 chr2R 5874358 5874399 flea 8 5098 2.0 4.0 3.0 2.0 5142 chr2R 5869257 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874399 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-57 538 chr2R 6096695 6096748 chr2R 6101918 6101944 BS 13 5211 14.0 6.5 10.2 1.2 5249 chr2R 6096695 intron EcR - chr2R 6099320 intron EcR - chr2R 6101944 intron EcR - chr2R_13_6095001 chr2R_6095001 RAL-57 545 chr2R 6494506 6494549 chr2R 6499293 6499336 F-element 12 4787 3.5 1.0 2.2 3.8 4830 chr2R 6494506 intergenic not near genes chr2R 6496921 intergenic not near genes chr2R 6499336 intergenic not near genes chr2R_12_6495001 chr2R_6495001 RAL-57 546 chr2R 6579770 6579801 chr2R 6584881 6584909 flea 7 5111 1.0 3.0 2.0 2.3 5139 chr2R 6579770 intron jing + chr2R 6582340 intron jing + chr2R 6584909 intron jing + chr2R_7_6580001 chr2R_6580001 RAL-57 555 chr2R 6952149 6952183 chr2R 6959754 6959788 opus 13 7605 3.5 3.0 3.2 3.1 7639 chr2R 6952149 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959788 intron,intron mim -,CheB42c - chr2R_13_6955001 chr2R_6955001 RAL-57 557 chr2R 7196548 7196587 chr2R 7201348 7201387 F-element 24 4800 14.5 0.0 7.2 2.9 4839 chr2R 7196548 intron pk + chr2R 7198968 intron pk + chr2R 7201387 intron pk + chr2R_24_7195001 chr2R_7195001 RAL-57 558 chr2R 7209859 7209873 chr2R 7217643 7217659 roo 15 7786 0.5 19.5 10.0 1.4 7800 chr2R 7209859 intron pk + chr2R 7213759 intron pk + chr2R 7217659 intron pk + chr2R_15_7210001 chr2R_7210001 RAL-57 561 chr2R 7235797 7235848 chr2R 7240914 7240952 jockey 21 5111 6.0 5.0 5.5 3.2 5155 chr2R 7235797 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240952 intergenic not near genes chr2R_21_7235001 chr2R_7235001 RAL-57 564 chr2R 7262190 7262203 chr2R 7269262 7269289 297 4 7079 6.0 7.5 6.8 0.5 7099 chr2R 7262190 intergenic not near genes chr2R 7265740 intergenic not near genes chr2R 7269289 intergenic not near genes chr2R_4_7265001 chr2R_7265001 RAL-57 571 chr2R 7434872 7434910 chr2R 7439198 7439235 Juan 23 4326 14.0 17.5 15.8 1.4 4363 chr2R 7434872 3` UTR so + chr2R 7437054 intergenic not near genes chr2R 7439235 intergenic not near genes chr2R_23_7435001 chr2R_7435001 RAL-57 575 chr2R 7608388 7608431 chr2R 7613616 7613649 I-element 9 5221 4.5 6.5 5.5 1.4 5261 chr2R 7608388 intron CG1358 - chr2R 7611018 intron CG1358 - chr2R 7613649 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-57 579 chr2R 7815647 7815703 chr2R 7822141 7822182 Burdock 28 6493 9.0 8.0 8.5 2.9 6535 chr2R 7815647 intergenic CG1882 + chr2R 7818914 intergenic not near genes chr2R 7822182 3` UTR cathD - chr2R_28_7815001 chr2R_7815001 RAL-57 580 chr2R 7862207 7862245 chr2R 7867346 7867382 flea 4 5138 3.0 1.0 2.0 1.3 5175 chr2R 7862207 intron Dgk - chr2R 7864794 intron Dgk - chr2R 7867382 intron Dgk - chr2R_4_7860001 chr2R_7860001 RAL-57 581 chr2R 7869186 7869197 chr2R 7873976 7873982 Doc 4 4798 6.5 3.5 5.0 0.7 4796 chr2R 7869186 intron Dgk - chr2R 7871584 intron Dgk - chr2R 7873982 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-57 591 chr2R 8330855 8330888 chr2R 8331352 8331399 roo 13 510 3.0 4.5 3.8 2.7 544 chr2R 8330855 intron pdm3 + chr2R 8331127 intron pdm3 + chr2R 8331399 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-57 593 chr2R 8398190 8398237 chr2R 8402996 8403043 Doc 23 4802 13.0 11.0 12.0 1.8 4853 chr2R 8398190 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403043 intron CG2121 - chr2R_23_8400001 chr2R_8400001 RAL-57 601 chr2R 8566039 8566065 chr2R 8567010 8567036 1360 10 971 8.0 10.0 9.0 1.0 997 chr2R 8566039 5` UTR Cyp6a14 - chr2R 8566538 5` UTR Cyp6a14 - chr2R 8567036 5` UTR Cyp6a14 - chr2R_10_8565001 chr2R_8565001 RAL-57 605 chr2R 8722740 8722786 chr2R 8723006 8723008 pogo 10 250 3.0 4.5 3.8 2.1 268 chr2R 8722740 intron CG14767 - chr2R 8722874 intron CG14767 - chr2R 8723008 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-57 614 chr2R 9151284 9151333 chr2R 9157779 9157828 Burdock 18 6495 7.5 9.0 8.2 2.0 6544 chr2R 9151284 exon CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157828 intergenic CG8008 - chr2R_18_9150001 chr2R_9150001 RAL-57 615 chr2R 9212680 9212691 chr2R 9213191 9213201 roo 9 510 15.0 3.5 9.2 0.9 521 chr2R 9212680 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213201 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-57 616 chr2R 9212692 9212724 chr2R 9213184 9213221 roo 11 505 5.5 3.5 4.5 2.0 529 chr2R 9212692 intergenic CR45309 + chr2R 9212956 intergenic CR45309 + chr2R 9213221 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 RAL-57 626 chr2R 9871019 9871070 chr2R 9871530 9871567 roo 13 509 4.0 5.0 4.5 2.4 548 chr2R 9871019 intron cbx - chr2R 9871293 intron cbx - chr2R 9871567 intron,5` UTR cbx -,CG18446 + chr2R_13_9870001 chr2R_9870001 RAL-57 627 chr2R 9863530 9863582 chr2R 9873442 9873493 INE-1 8 9912 18.5 16.5 17.5 0.4 9963 chr2R 9863530 intergenic CG30010 + chr2R 9868512 intron,5` UTR cbx -,CR45138 + chr2R 9873493 intron,3` UTR cbx -,CG18446 + chr2R_8_9865001 chr2R_9865001 RAL-57 630 chr2R 10005846 10005865 chr2R 10007013 10007055 1360 5 1180 8.0 4.0 6.0 0.7 1209 chr2R 10005846 intron Pka-R2 - chr2R 10006450 intron Pka-R2 - chr2R 10007055 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-57 631 chr2R 10005869 10005879 chr2R 10007011 10007057 1360 5 1154 6.5 2.5 4.5 0.9 1188 chr2R 10005869 intron Pka-R2 - chr2R 10006463 intron Pka-R2 - chr2R 10007057 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-57 638 chr2R 10176860 10176901 chr2R 10186052 10186093 roo 5 9192 1.0 1.0 1.0 2.5 9233 chr2R 10176860 intron KCNQ - chr2R 10181476 intron KCNQ - chr2R 10186093 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-57 656 chr2R 10585578 10585588 chr2R 10594179 10594196 Tirant 5 8605 5.5 4.0 4.8 0.9 8618 chr2R 10585578 intron psq + chr2R 10589887 intron psq + chr2R 10594196 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-57 662 chr2R 10979653 10979672 chr2R 10980129 10980167 297 5 490 3.5 5.0 4.2 1.0 514 chr2R 10979653 intergenic not near genes chr2R 10979910 intergenic not near genes chr2R 10980167 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-57 665 chr2R 11207798 11207847 chr2R 11208016 11208020 BS 19 214 5.0 7.5 6.2 2.6 222 chr2R 11207798 intron shn + chr2R 11207909 intron shn + chr2R 11208020 intron shn + chr2R_19_11205001 chr2R_11205001 RAL-57 669 chr2R 11297621 11297641 chr2R 11301970 11301990 flea 7 4349 5.0 0.0 2.5 2.0 4369 chr2R 11297621 intergenic CG42336 - chr2R 11299806 intergenic not near genes chr2R 11301990 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-57 671 chr2R 11415520 11415541 chr2R 11418694 11418713 opus 4 3172 1.0 5.5 3.2 1.0 3193 chr2R 11415520 intron Drip - chr2R 11417116 intron Drip - chr2R 11418713 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-57 672 chr2R 11472627 11472676 chr2R 11473847 11473894 pogo 28 1221 5.0 4.5 4.8 4.8 1267 chr2R 11472627 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473894 intergenic not near genes chr2R_28_11470001 chr2R_11470001 RAL-57 696 chr2R 12481154 12481170 chr2R 12482943 12482974 roo 10 1801 6.0 18.0 12.0 0.8 1820 chr2R 12481154 exon Dh44-R2 + chr2R 12482064 intron Dh44-R2 + chr2R 12482974 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-57 699 chr2R 12501698 12501721 chr2R 12503848 12503908 Rt1c 20 2172 9.0 11.5 10.2 1.8 2210 chr2R 12501698 intron fdl - chr2R 12502803 intron fdl - chr2R 12503908 intron fdl - chr2R_20_12500001 chr2R_12500001 RAL-57 709 chr2R 12789284 12789287 chr2R 12797658 12797674 roo 5 8382 0.5 4.5 2.5 1.4 8390 chr2R 12789284 intron,3` UTR sca +,CR45137 - chr2R 12793479 intron,intron sca +,CR45137 - chr2R 12797674 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-57 710 chr2R 12789289 12789328 chr2R 12797657 12797692 roo 11 8370 0.5 4.5 2.5 3.1 8403 chr2R 12789289 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797692 intron,3` UTR sca +,CR45137 - chr2R_11_12790001 chr2R_12790001 RAL-57 715 chr2R 13136817 13136859 chr2R 13141640 13141682 Doc 33 4822 14.5 8.5 11.5 2.6 4865 chr2R 13136817 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141682 intron Cap-G + chr2R_33_13135001 chr2R_13135001 RAL-57 727 chr2R 13580486 13580531 chr2R 13580851 13580876 jockey 23 372 0.0 10.5 5.2 3.7 390 chr2R 13580486 3` UTR CG6191 - chr2R 13580681 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580876 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_23_13580001 chr2R_13580001 RAL-57 730 chr2R 13728115 13728155 chr2R 13735797 13735837 opus 8 7682 2.5 1.0 1.8 2.9 7722 chr2R 13728115 intron fas + chr2R 13731976 intron fas + chr2R 13735837 intron fas + chr2R_8_13730001 chr2R_13730001 RAL-57 739 chr2R 13905582 13905601 chr2R 13907589 13907598 Rt1a 14 2004 25.0 12.5 18.8 0.7 2016 chr2R 13905582 intron shot - chr2R 13906590 intron shot - chr2R 13907598 intron shot - chr2R_14_13905001 chr2R_13905001 RAL-57 740 chr2R 13905602 13905633 chr2R 13907584 13907620 Rt1a 31 1997 11.5 11.5 11.5 2.5 2018 chr2R 13905602 intron shot - chr2R 13906611 intron shot - chr2R 13907620 intron shot - chr2R_31_13905001 chr2R_13905001 RAL-57 747 chr2R 14467284 14467325 chr2R 14476465 14476508 roo 8 9181 3.0 2.5 2.8 2.1 9224 chr2R 14467284 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476508 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-57 748 chr2R 14497366 14497417 chr2R 14498554 14498604 1360 7 1188 0.0 3.5 1.8 2.5 1238 chr2R 14497366 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498604 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-57 753 chr2R 14889189 14889209 chr2R 14897822 14897841 Max-element 6 8633 5.0 1.0 3.0 1.5 8652 chr2R 14889189 intergenic Cyp6a8 - chr2R 14893515 intergenic not near genes chr2R 14897841 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-57 759 chr2R 15084970 15084988 chr2R 15092029 15092062 297 8 7070 4.0 3.0 3.5 1.8 7092 chr2R 15084970 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092062 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-57 760 chr2R 15119314 15119323 chr2R 15127820 15127829 Tirant 4 8506 4.5 4.0 4.2 0.8 8515 chr2R 15119314 intron chn + chr2R 15123572 intron chn + chr2R 15127829 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-57 761 chr2R 15119329 15119350 chr2R 15127819 15127835 Tirant 6 8493 6.0 4.0 5.0 1.0 8506 chr2R 15119329 intron chn + chr2R 15123582 intron chn + chr2R 15127835 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-57 786 chr2R 16061706 16061714 chr2R 16064364 16064372 Burdock 4 2658 9.0 6.5 7.8 0.5 2666 chr2R 16061706 intergenic not near genes chr2R 16063039 intergenic not near genes chr2R 16064372 intergenic not near genes chr2R_4_16060001 chr2R_16060001 RAL-57 801 chr2R 17147226 17147260 chr2R 17152282 17152316 jockey 16 5056 5.0 9.5 7.2 2.0 5090 chr2R 17147226 intergenic not near genes chr2R 17149771 intergenic not near genes chr2R 17152316 intergenic not near genes chr2R_16_17145001 chr2R_17145001 RAL-57 803 chr2R 17236484 17236537 chr2R 17241713 17241743 copia 14 5226 4.0 2.5 3.2 3.3 5259 chr2R 17236484 intron mbl + chr2R 17239114 intron mbl + chr2R 17241743 intron mbl + chr2R_14_17235001 chr2R_17235001 RAL-57 812 chr2R 17782342 17782379 chr2R 17783570 17783607 pogo 10 1228 1.0 1.0 1.0 5.0 1265 chr2R 17782342 intergenic CG33981 -,fab1 - chr2R 17782974 intergenic not near genes chr2R 17783607 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-57 813 chr2R 17784002 17784045 chr2R 17784268 17784296 pogo 8 262 5.5 4.5 5.0 1.3 294 chr2R 17784002 intergenic mir-31a - chr2R 17784149 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-57 820 chr2R 18045647 18045696 chr2R 18046024 18046073 jockey 18 377 7.0 7.5 7.2 2.2 426 chr2R 18045647 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046073 intergenic CG5767 - chr2R_18_18045001 chr2R_18045001 RAL-57 825 chr2R 18358382 18358419 chr2R 18372619 18372651 roo 15 14236 2.0 5.5 3.8 3.1 14269 chr2R 18358382 intergenic not near genes chr2R 18365516 intergenic not near genes chr2R 18372651 intergenic not near genes chr2R_15_18365001 chr2R_18365001 RAL-57 829 chr2R 18575771 18575827 chr2R 18581984 18582040 3S18 18 6196 4.5 4.5 4.5 3.3 6269 chr2R 18575771 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582040 intron GEFmeso - chr2R_18_18575001 chr2R_18575001 RAL-57 830 chr2R 18590843 18590897 chr2R 18600020 18600049 roo 18 9171 6.0 3.0 4.5 3.3 9206 chr2R 18590843 intron GEFmeso - chr2R 18595446 intron GEFmeso - chr2R 18600049 intron GEFmeso - chr2R_18_18595001 chr2R_18595001 RAL-57 848 chr2R 19776573 19776621 chr2R 19779921 19779969 jockey 14 3348 5.0 11.0 8.0 1.6 3396 chr2R 19776573 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779969 intergenic not near genes chr2R_14_19775001 chr2R_19775001 RAL-57 849 chr2R 19914836 19914867 chr2R 19922273 19922304 mdg1 6 7437 3.5 4.5 4.0 1.2 7468 chr2R 19914836 intergenic not near genes chr2R 19918570 intergenic not near genes chr2R 19922304 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-57 851 chr2R 19957411 19957459 chr2R 19962636 19962686 copia 5 5225 3.0 1.0 2.0 1.7 5275 chr2R 19957411 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962686 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-57 853 chr2R 20069217 20069245 chr2R 20071872 20071901 opus 5 2656 1.5 1.5 1.5 2.0 2684 chr2R 20069217 intergenic not near genes chr2R 20070559 intergenic not near genes chr2R 20071901 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-57 867 chr2R 20739440 20739468 chr2R 20744233 20744261 F-element 4 4793 1.5 2.5 2.0 1.3 4821 chr2R 20739440 intron dpr + chr2R 20741850 intron dpr + chr2R 20744261 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-57 868 chr2R 20783286 20783330 chr2R 20788083 20788127 F-element 6 4797 2.5 0.5 1.5 2.4 4841 chr2R 20783286 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788127 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-57 878 chr2R 21151136 21151145 chr2R 21153793 21153803 opus 10 2658 0.0 19.5 9.8 0.9 2667 chr2R 21151136 intron CG30389 - chr2R 21152470 intron CG30389 - chr2R 21153803 intron CG30389 - chr2R_10_21150001 chr2R_21150001 RAL-57 886 chr2R 21738280 21738293 chr2R 21747447 21747478 roo 4 9180 4.5 2.5 3.5 0.9 9198 chr2R 21738280 intergenic not near genes chr2R 21742879 intergenic not near genes chr2R 21747478 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-57 887 chr2R 21809512 21809552 chr2R 21817777 21817817 roo 6 8265 2.5 1.5 2.0 2.0 8305 chr2R 21809512 intergenic not near genes chr2R 21813664 intergenic not near genes chr2R 21817817 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-57 903 chr2R 22349677 22349722 chr2R 22351477 22351531 jockey 18 1806 8.5 7.0 7.8 2.0 1854 chr2R 22349677 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351531 intron Liprin-gamma - chr2R_18_22350001 chr2R_22350001 RAL-57 905 chr2R 22525726 22525777 chr2R 22529306 22529348 jockey 10 3579 6.5 5.5 6.0 1.4 3622 chr2R 22525726 intron px - chr2R 22527537 intron px - chr2R 22529348 intron px - chr2R_10_22525001 chr2R_22525001 RAL-57 915 chr2R 22774943 22774994 chr2R 22775387 22775437 jockey 23 443 9.5 12.0 10.8 1.9 494 chr2R 22774943 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775437 intron CG42260 - chr2R_23_22775001 chr2R_22775001 RAL-57 919 chr2R 22843007 22843042 chr2R 22844994 22845029 flea 15 1987 9.5 6.0 7.8 1.7 2022 chr2R 22843007 intergenic CG9826 + chr2R 22844018 intergenic not near genes chr2R 22845029 intergenic not near genes chr2R_15_22840001 chr2R_22840001 RAL-57 946 chr2R 23529564 23529568 chr2R 23537151 23537159 412 5 7595 32.0 19.0 25.5 0.2 7595 chr2R 23529564 intron bw - chr2R 23533362 intron bw - chr2R 23537159 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-57 947 chr2R 23529571 23529607 chr2R 23537148 23537179 412 29 7582 16.0 13.5 14.8 1.8 7608 chr2R 23529571 intron bw - chr2R 23533375 intron bw - chr2R 23537179 exon bw - chr2R_29_23530001 chr2R_23530001 RAL-57 956 chr2R 23914285 23914332 chr2R 23921934 23921981 412 16 7643 7.0 7.0 7.0 2.0 7696 chr2R 23914285 exon kcc + chr2R 23918133 intron kcc + chr2R 23921981 exon kcc + chr2R_16_23915001 chr2R_23915001 RAL-57 959 chr2R 24147048 24147068 chr2R 24154651 24154669 412 8 7599 16.5 9.0 12.8 0.6 7621 chr2R 24147048 intron Dat + chr2R 24150858 intron Dat + chr2R 24154669 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-57 960 chr2R 24147070 24147088 chr2R 24154644 24154661 412 4 7584 8.0 7.0 7.5 0.5 7591 chr2R 24147070 intron Dat + chr2R 24150866 intron Dat + chr2R 24154661 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-57 961 chr2R 24177212 24177267 chr2R 24184722 24184777 412 13 7510 6.0 0.5 3.2 3.1 7565 chr2R 24177212 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184777 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-57 969 chr2R 24353407 24353441 chr2R 24361794 24361828 roo 28 8387 12.5 12.0 12.2 2.1 8421 chr2R 24353407 intron,intron bs +,CR44811 - chr2R 24357618 intron,intron bs +,CR44811 - chr2R 24361828 intron,intron bs +,CR44811 - chr2R_28_24355001 chr2R_24355001 RAL-57 980 chr2R 24647565 24647609 chr2R 24655146 24655191 412 6 7582 7.0 2.0 4.5 1.1 7626 chr2R 24647565 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655191 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-57 981 chr2R 24727867 24727917 chr2R 24735390 24735450 mdg1 36 7522 13.0 14.5 13.8 2.4 7583 chr2R 24727867 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735450 intron Mid1 - chr2R_36_24730001 chr2R_24730001 RAL-57 982 chr2R 24763586 24763599 chr2R 24765587 24765600 G2 4 1999 34.0 17.5 25.8 0.1 2014 chr2R 24763586 exon CG3894 + chr2R 24764593 intron CG3894 + chr2R 24765600 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-57 983 chr2R 24763600 24763644 chr2R 24765586 24765645 G2 71 1989 17.0 17.5 17.2 3.9 2045 chr2R 24763600 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765645 exon CG3894 + chr2R_71_24760001 chr2R_24760001 RAL-57 999 chr3L 402673 402717 chr3L 409744 409795 297 26 7074 2.5 8.0 5.2 4.2 7122 chr3L 402673 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409795 intergenic not near genes chr3L_26_405001 chr3L_405001 RAL-57 1010 chr3L 789925 789945 chr3L 790469 790489 roo 5 544 1.0 2.0 1.5 2.0 564 chr3L 789925 intergenic not near genes chr3L 790207 intergenic not near genes chr3L 790489 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-57 1014 chr3L 857982 858001 chr3L 866485 866507 Tirant 8 8500 17.0 8.5 12.8 0.6 8525 chr3L 857982 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866507 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-57 1015 chr3L 858006 858029 chr3L 866480 866514 Tirant 6 8472 9.5 8.0 8.8 0.6 8508 chr3L 858006 intergenic not near genes chr3L 862260 intergenic not near genes chr3L 866514 5` UTR CG12502 + chr3L_6_860001 chr3L_860001 RAL-57 1017 chr3L 925152 925199 chr3L 932603 932650 mdg1 12 7451 4.5 1.0 2.8 3.2 7498 chr3L 925152 intron Glut1 + chr3L 928901 intron Glut1 + chr3L 932650 intron Glut1 + chr3L_12_925001 chr3L_925001 RAL-57 1019 chr3L 939752 939791 chr3L 940898 940937 jockey 19 1146 7.5 7.5 7.5 2.2 1185 chr3L 939752 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940937 intron Glut1 + chr3L_19_940001 chr3L_940001 RAL-57 1031 chr3L 1154118 1154159 chr3L 1163293 1163333 roo 9 9175 8.0 6.0 7.0 1.1 9215 chr3L 1154118 intron bab2 - chr3L 1158726 intron bab2 - chr3L 1163333 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-57 1035 chr3L 1219580 1219625 chr3L 1227328 1227360 412 44 7751 8.0 10.0 9.0 4.4 7780 chr3L 1219580 intron mwh + chr3L 1223470 intron mwh + chr3L 1227360 intron mwh + chr3L_44_1220001 chr3L_1220001 RAL-57 1039 chr3L 1485729 1485735 chr3L 1486910 1486931 1360 8 1190 19.0 29.5 24.2 0.3 1202 chr3L 1485729 intron stet - chr3L 1486330 intron stet - chr3L 1486931 intron stet - chr3L_8_1485001 chr3L_1485001 RAL-57 1040 chr3L 1485736 1485741 chr3L 1486908 1486937 1360 5 1182 14.5 28.0 21.2 0.2 1201 chr3L 1485736 intron stet - chr3L 1486336 intron stet - chr3L 1486937 intron stet - chr3L_5_1485001 chr3L_1485001 RAL-57 1041 chr3L 1505970 1506028 chr3L 1513592 1513650 17.6 29 7621 7.0 6.5 6.8 3.7 7680 chr3L 1505970 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513650 intron,intron Psa +,cue - chr3L_29_1505001 chr3L_1505001 RAL-57 1043 chr3L 1740838 1740847 chr3L 1741108 1741112 pogo 5 269 9.5 5.5 7.5 0.6 274 chr3L 1740838 intron Gk + chr3L 1740975 intron Gk + chr3L 1741112 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-57 1044 chr3L 1740850 1740887 chr3L 1741103 1741153 pogo 9 265 6.0 4.5 5.2 1.5 303 chr3L 1740850 intron Gk + chr3L 1741002 intron Gk + chr3L 1741153 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-57 1050 chr3L 2108225 2108280 chr3L 2113453 2113503 copia 20 5229 4.0 7.5 5.8 2.9 5278 chr3L 2108225 intron sls - chr3L 2110864 intron sls - chr3L 2113503 intron sls - chr3L_20_2110001 chr3L_2110001 RAL-57 1057 chr3L 2447485 2447538 chr3L 2456660 2456701 roo 23 9173 8.0 10.5 9.2 2.3 9216 chr3L 2447485 intron CG45186 + chr3L 2452093 intron CG45186 + chr3L 2456701 intron CG45186 + chr3L_23_2450001 chr3L_2450001 RAL-57 1069 chr3L 2927815 2927871 chr3L 2936117 2936173 Tirant 16 8301 3.0 1.0 2.0 5.3 8358 chr3L 2927815 intron Shab + chr3L 2931994 intron Shab + chr3L 2936173 intron Shab + chr3L_16_2930001 chr3L_2930001 RAL-57 1071 chr3L 3040305 3040329 chr3L 3042119 3042139 S-element 10 1811 12.5 0.0 6.2 1.4 1834 chr3L 3040305 3` UTR CG2162 + chr3L 3041222 intergenic not near genes chr3L 3042139 intergenic Jafrac2 + chr3L_10_3040001 chr3L_3040001 RAL-57 1072 chr3L 3051722 3051743 chr3L 3051989 3052010 pogo 19 267 20.0 8.5 14.2 1.2 288 chr3L 3051722 3` UTR CG32485 + chr3L 3051866 intergenic CG32485 + chr3L 3052010 intergenic CG32485 + chr3L_19_3050001 chr3L_3050001 RAL-57 1073 chr3L 3061290 3061317 chr3L 3069878 3069903 Tirant 11 8590 9.0 16.0 12.5 0.8 8613 chr3L 3061290 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069903 intron CG32486 - chr3L_11_3065001 chr3L_3065001 RAL-57 1076 chr3L 3281456 3281468 chr3L 3281933 3281989 Doc 9 506 0.0 5.0 2.5 2.6 533 chr3L 3281456 intron CG12017 + chr3L 3281722 intron CG12017 + chr3L 3281989 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-57 1079 chr3L 3601275 3601316 chr3L 3606611 3606652 copia 8 5334 1.0 6.0 3.5 1.8 5377 chr3L 3601275 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606652 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-57 1087 chr3L 3833713 3833770 chr3L 3833979 3834035 pogo 20 266 6.0 3.5 4.8 3.4 322 chr3L 3833713 intron enc + chr3L 3833874 intron enc + chr3L 3834035 intron enc + chr3L_20_3830001 chr3L_3830001 RAL-57 1094 chr3L 4328728 4328757 chr3L 4336249 4336279 412 8 7521 4.0 2.5 3.2 1.9 7551 chr3L 4328728 intron Cip4 - chr3L 4332504 intron Cip4 - chr3L 4336279 exon Cip4 - chr3L_8_4330001 chr3L_4330001 RAL-57 1111 chr3L 4901108 4901140 chr3L 4907323 4907339 diver 12 6212 9.0 3.5 6.2 1.7 6231 chr3L 4901108 intergenic CG13704 + chr3L 4904224 intergenic not near genes chr3L 4907339 intergenic not near genes chr3L_12_4900001 chr3L_4900001 RAL-57 1112 chr3L 5045447 5045478 chr3L 5050253 5050284 Doc 4 4806 1.0 2.5 1.8 1.4 4837 chr3L 5045447 intron Con - chr3L 5047866 intron Con - chr3L 5050284 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-57 1127 chr3L 5537696 5537751 chr3L 5538063 5538109 jockey 15 364 5.5 11.0 8.2 1.6 413 chr3L 5537696 intergenic not near genes chr3L 5537902 intergenic not near genes chr3L 5538109 intergenic CG10625 - chr3L_15_5535001 chr3L_5535001 RAL-57 1135 chr3L 5910015 5910055 chr3L 5910281 5910321 pogo 13 266 5.0 4.5 4.8 2.2 306 chr3L 5910015 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910321 intron CG13288 + chr3L_13_5910001 chr3L_5910001 RAL-57 1137 chr3L 5926306 5926347 chr3L 5926503 5926559 BS 17 207 5.0 12.5 8.8 1.7 253 chr3L 5926306 intron Vap-33B + chr3L 5926432 intron Vap-33B + chr3L 5926559 intron Vap-33B + chr3L_17_5925001 chr3L_5925001 RAL-57 1138 chr3L 6001678 6001707 chr3L 6004403 6004432 jockey 6 2725 1.5 3.0 2.2 1.9 2754 chr3L 6001678 intron PVRAP + chr3L 6003055 intron PVRAP + chr3L 6004432 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-57 1139 chr3L 6040343 6040391 chr3L 6042724 6042772 Doc 26 2380 7.0 6.5 6.8 3.3 2429 chr3L 6040343 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042772 intergenic not near genes chr3L_26_6040001 chr3L_6040001 RAL-57 1146 chr3L 6220892 6220942 chr3L 6230065 6230118 roo 7 9176 1.5 1.0 1.2 3.2 9226 chr3L 6220892 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230118 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-57 1148 chr3L 6335008 6335043 chr3L 6335498 6335539 297 12 494 2.5 6.0 4.2 2.3 531 chr3L 6335008 intron CG13300 - chr3L 6335274 intron CG13300 - chr3L 6335539 intron CG13300 - chr3L_12_6335001 chr3L_6335001 RAL-57 1149 chr3L 6405640 6405680 chr3L 6432129 6432162 roo 10 26488 2.5 2.0 2.2 3.1 26522 chr3L 6405640 intron CG42747 + chr3L 6418901 intron CG42747 + chr3L 6432162 intron CG42747 + chr3L_10_6415001 chr3L_6415001 RAL-57 1151 chr3L 6620608 6620612 chr3L 6621053 6621067 Rt1c 4 452 3.5 5.5 4.5 0.7 459 chr3L 6620608 intergenic not near genes chr3L 6620838 intergenic not near genes chr3L 6621067 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-57 1155 chr3L 6994888 6994906 chr3L 6995522 6995541 BS 11 635 0.0 6.5 3.2 2.6 653 chr3L 6994888 intergenic bin + chr3L 6995214 intergenic not near genes chr3L 6995541 intergenic not near genes chr3L_11_6995001 chr3L_6995001 RAL-57 1170 chr3L 7377292 7377344 chr3L 7380422 7380474 297 14 3129 3.5 8.5 6.0 2.0 3182 chr3L 7377292 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380474 intron SMSr - chr3L_14_7375001 chr3L_7375001 RAL-57 1182 chr3L 7793692 7793739 chr3L 7800769 7800816 297 8 7076 3.0 6.5 4.8 1.4 7124 chr3L 7793692 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800816 intron CG32369 - chr3L_8_7795001 chr3L_7795001 RAL-57 1186 chr3L 7886494 7886534 chr3L 7889037 7889077 Stalker4 8 2541 0.5 1.0 0.8 4.4 2583 chr3L 7886494 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889077 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-57 1187 chr3L 7916815 7916852 chr3L 7926011 7926048 roo 9 9196 4.0 5.0 4.5 1.6 9233 chr3L 7916815 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926048 3` UTR syd - chr3L_9_7920001 chr3L_7920001 RAL-57 1188 chr3L 7985346 7985389 chr3L 7987699 7987742 NOF 11 2353 3.5 6.0 4.8 1.9 2396 chr3L 7985346 intron nmo + chr3L 7986544 intron nmo + chr3L 7987742 intron nmo + chr3L_11_7985001 chr3L_7985001 RAL-57 1192 chr3L 8233567 8233583 chr3L 8238854 8238870 Rt1a 8 5286 10.5 19.5 15.0 0.5 5303 chr3L 8233567 intron CG7213 - chr3L 8236218 intron CG7213 - chr3L 8238870 intron,intron CG7213 -,Dscam4 + chr3L_8_8235001 chr3L_8235001 RAL-57 1201 chr3L 8481781 8481797 chr3L 8490965 8490970 roo 7 9181 14.5 17.5 16.0 0.4 9189 chr3L 8481781 intron CG43163 - chr3L 8486376 intron CG43163 - chr3L 8490970 intron CG43163 - chr3L_7_8485001 chr3L_8485001 RAL-57 1202 chr3L 8498300 8498316 chr3L 8505779 8505808 blood 4 7488 2.0 2.5 2.2 1.2 7508 chr3L 8498300 intron CG43163 - chr3L 8502054 intron CG43163 - chr3L 8505808 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-57 1206 chr3L 8791251 8791307 chr3L 8796696 8796751 I-element 10 5444 7.5 0.0 3.8 2.1 5500 chr3L 8791251 exon Fhos + chr3L 8794001 intron Fhos + chr3L 8796751 intron Fhos + chr3L_10_8790001 chr3L_8790001 RAL-57 1214 chr3L 9076912 9076952 chr3L 9084495 9084536 412 5 7584 2.0 1.5 1.8 1.8 7624 chr3L 9076912 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084536 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-57 1216 chr3L 9130533 9130581 chr3L 9134319 9134367 412 23 3783 9.0 6.5 7.8 2.6 3834 chr3L 9130533 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134367 intergenic Dhpr + chr3L_23_9130001 chr3L_9130001 RAL-57 1217 chr3L 9164687 9164708 chr3L 9166167 9166199 hobo 7 1490 3.5 0.0 1.8 2.5 1512 chr3L 9164687 intron Rdl - chr3L 9165443 intron Rdl - chr3L 9166199 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-57 1218 chr3L 9219256 9219272 chr3L 9219911 9219933 jockey 8 668 3.0 3.0 3.0 2.0 677 chr3L 9219256 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219933 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-57 1219 chr3L 9270596 9270650 chr3L 9278376 9278390 roo 21 7772 6.0 10.5 8.2 2.3 7794 chr3L 9270596 intron GluRIB + chr3L 9274493 intron GluRIB + chr3L 9278390 exon GluRIB + chr3L_21_9270001 chr3L_9270001 RAL-57 1226 chr3L 9443495 9443539 chr3L 9445309 9445355 S-element 30 1816 6.5 10.0 8.2 3.3 1860 chr3L 9443495 intron CG33926 + chr3L 9444425 intron CG33926 + chr3L 9445355 intron CG33926 + chr3L_30_9440001 chr3L_9440001 RAL-57 1228 chr3L 9575892 9575942 chr3L 9580996 9581029 jockey 8 5099 2.0 4.0 3.0 2.0 5137 chr3L 9575892 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581029 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-57 1239 chr3L 9929647 9929696 chr3L 9938454 9938502 roo 8 8806 4.0 2.0 3.0 2.0 8855 chr3L 9929647 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938502 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-57 1248 chr3L 10414953 10414974 chr3L 10417347 10417369 Doc 5 2396 0.0 2.5 1.2 2.3 2416 chr3L 10414953 intergenic CG12362 + chr3L 10416161 intergenic not near genes chr3L 10417369 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-57 1260 chr3L 11087082 11087089 chr3L 11088849 11088903 S-element 8 1807 4.5 4.0 4.2 1.5 1821 chr3L 11087082 intron JIL-1 - chr3L 11087992 intron JIL-1 - chr3L 11088903 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-57 1261 chr3L 11105277 11105321 chr3L 11107012 11107056 X-element 20 1735 8.5 13.0 10.8 1.7 1779 chr3L 11105277 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107056 exon CG32073 - chr3L_20_11105001 chr3L_11105001 RAL-57 1266 chr3L 11277429 11277481 chr3L 11278452 11278498 Rt1a 30 1017 5.0 9.5 7.2 3.7 1069 chr3L 11277429 intergenic not near genes chr3L 11277964 intergenic not near genes chr3L 11278498 intergenic not near genes chr3L_30_11275001 chr3L_11275001 RAL-57 1278 chr3L 11564793 11564796 chr3L 11572408 11572431 412 6 7636 12.0 8.0 10.0 0.5 7638 chr3L 11564793 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572431 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-57 1287 chr3L 11723066 11723107 chr3L 11727885 11727927 Doc 21 4820 9.5 6.5 8.0 2.3 4861 chr3L 11723066 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727927 3` UTR Bmcp + chr3L_21_11725001 chr3L_11725001 RAL-57 1328 chr3L 12957764 12957812 chr3L 12962271 12962319 copia 7 4507 1.5 2.0 1.8 2.5 4555 chr3L 12957764 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962319 intergenic not near genes chr3L_7_12960001 chr3L_12960001 RAL-57 1341 chr3L 13525135 13525187 chr3L 13532956 13532989 roo 23 7819 4.0 4.5 4.2 4.4 7854 chr3L 13525135 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532989 intergenic not near genes chr3L_23_13525001 chr3L_13525001 RAL-57 1342 chr3L 13574605 13574619 chr3L 13580141 13580153 Rt1c 5 5536 5.0 6.0 5.5 0.8 5548 chr3L 13574605 intron bru-3 - chr3L 13577379 intron bru-3 - chr3L 13580153 intron bru-3 - chr3L_5_13575001 chr3L_13575001 RAL-57 1346 chr3L 13804531 13804571 chr3L 13822842 13822861 roo 6 18307 5.0 3.0 4.0 1.2 18330 chr3L 13804531 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822861 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-57 1356 chr3L 14245547 14245592 chr3L 14245665 14245711 1360 6 112 1.0 1.5 1.2 2.7 164 chr3L 14245547 3` UTR CR44561 - chr3L 14245629 3` UTR CR44561 - chr3L 14245711 intergenic CR44561 -,CR44560 + chr3L_6_14245001 chr3L_14245001 RAL-57 1357 chr3L 14312017 14312033 chr3L 14316856 14316872 X-element 4 4838 9.5 12.5 11.0 0.3 4855 chr3L 14312017 exon fz + chr3L 14314444 intron fz + chr3L 14316872 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-57 1358 chr3L 14312035 14312056 chr3L 14316833 14316859 X-element 9 4816 2.5 8.5 5.5 1.4 4824 chr3L 14312035 exon fz + chr3L 14314447 intron fz + chr3L 14316859 intron fz + chr3L_9_14310001 chr3L_14310001 RAL-57 1364 chr3L 14468430 14468472 chr3L 14473661 14473702 copia 6 5231 0.5 2.0 1.2 2.7 5272 chr3L 14468430 intron bbg - chr3L 14471066 intron bbg - chr3L 14473702 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-57 1368 chr3L 14721170 14721202 chr3L 14723037 14723049 Rt1c 4 1855 2.5 2.0 2.2 1.2 1879 chr3L 14721170 intron ome + chr3L 14722110 intron ome + chr3L 14723049 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-57 1372 chr3L 14970740 14970763 chr3L 14971075 14971098 F-element 4 335 8.5 4.5 6.5 0.5 358 chr3L 14970740 intergenic Tom + chr3L 14970919 intergenic not near genes chr3L 14971098 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-57 1391 chr3L 16184077 16184137 chr3L 16188921 16188959 X-element 12 4842 1.5 5.5 3.5 2.7 4882 chr3L 16184077 intergenic not near genes chr3L 16186518 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_12_16185001 chr3L_16185001 RAL-57 1394 chr3L 16443824 16443864 chr3L 16446191 16446228 Doc 4 2362 3.5 2.5 3.0 1.0 2404 chr3L 16443824 intron,intron CG33158 +,dsx-c73A - chr3L 16445026 intron,intron CG33158 +,dsx-c73A - chr3L 16446228 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-57 1395 chr3L 16493950 16493965 chr3L 16494492 16494500 jockey 7 540 18.5 8.0 13.2 0.5 550 chr3L 16493950 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494225 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494500 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-57 1396 chr3L 16493970 16494004 chr3L 16494490 16494546 jockey 18 539 8.5 7.0 7.8 2.0 576 chr3L 16493970 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494258 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494546 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_18_16490001 chr3L_16490001 RAL-57 1399 chr3L 16616495 16616511 chr3L 16621847 16621851 297 5 5350 17.0 8.0 12.5 0.4 5356 chr3L 16616495 3` UTR Abl - chr3L 16619173 3` UTR Abl - chr3L 16621851 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-57 1400 chr3L 16616513 16616541 chr3L 16621842 16621894 297 14 5348 8.0 7.0 7.5 1.6 5381 chr3L 16616513 3` UTR Abl - chr3L 16619204 3` UTR Abl - chr3L 16621894 3` UTR Abl - chr3L_14_16615001 chr3L_16615001 RAL-57 1410 chr3L 16945720 16945757 chr3L 16954880 16954918 roo 16 9161 2.5 3.0 2.8 4.2 9198 chr3L 16945720 exon Obp73a + chr3L 16950319 intergenic not near genes chr3L 16954918 5` UTR Nc73EF + chr3L_16_16950001 chr3L_16950001 RAL-57 1413 chr3L 17034908 17034961 chr3L 17035121 17035174 G2 17 213 2.0 5.5 3.8 3.5 266 chr3L 17034908 intergenic not near genes chr3L 17035041 intergenic not near genes chr3L 17035174 intergenic beg + chr3L_17_17035001 chr3L_17035001 RAL-57 1415 chr3L 17084986 17085029 chr3L 17094160 17094203 roo 23 9174 8.5 8.0 8.2 2.5 9217 chr3L 17084986 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094203 intron Rbp6 - chr3L_23_17085001 chr3L_17085001 RAL-57 1425 chr3L 17516954 17517008 chr3L 17524537 17524584 412 33 7579 8.0 6.0 7.0 4.1 7630 chr3L 17516954 intron CG7564 + chr3L 17520769 intron CG7564 + chr3L 17524584 3` UTR CG7564 + chr3L_33_17520001 chr3L_17520001 RAL-57 1427 chr3L 17730830 17730841 chr3L 17738185 17738196 mdg1 6 7355 13.5 6.0 9.8 0.6 7366 chr3L 17730830 intron Ccn + chr3L 17734513 intron Ccn + chr3L 17738196 intron Ccn + chr3L_6_17730001 chr3L_17730001 RAL-57 1428 chr3L 17730843 17730878 chr3L 17738181 17738233 mdg1 15 7354 7.5 6.0 6.8 1.9 7390 chr3L 17730843 intron Ccn + chr3L 17734538 intron Ccn + chr3L 17738233 intron Ccn + chr3L_15_17730001 chr3L_17730001 RAL-57 1430 chr3L 17799787 17799840 chr3L 17801600 17801654 S-element 42 1814 8.5 6.5 7.5 4.9 1867 chr3L 17799787 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801654 intron NUCB1 - chr3L_42_17800001 chr3L_17800001 RAL-57 1436 chr3L 18047687 18047735 chr3L 18056767 18056784 roo 13 9078 2.0 5.0 3.5 2.9 9097 chr3L 18047687 intron Eip75B - chr3L 18052236 intron Eip75B - chr3L 18056784 intron Eip75B - chr3L_13_18050001 chr3L_18050001 RAL-57 1451 chr3L 18528606 18528657 chr3L 18537792 18537843 roo 23 9186 5.5 4.0 4.8 4.0 9237 chr3L 18528606 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537843 intergenic not near genes chr3L_23_18530001 chr3L_18530001 RAL-57 1452 chr3L 18593924 18593980 chr3L 18595929 18595985 Doc 24 2004 6.0 4.5 5.2 3.9 2061 chr3L 18593924 intergenic term - chr3L 18594954 intergenic not near genes chr3L 18595985 intergenic CR45389 + chr3L_24_18590001 chr3L_18590001 RAL-57 1456 chr3L 18710767 18710785 chr3L 18718742 18718760 Stalker2 5 7975 1.0 2.0 1.5 2.0 7993 chr3L 18710767 intergenic not near genes chr3L 18714764 intergenic not near genes chr3L 18718760 intergenic not near genes chr3L_5_18710001 chr3L_18710001 RAL-57 1460 chr3L 18772386 18772441 chr3L 18781092 18781113 roo 28 8704 8.5 9.5 9.0 2.8 8727 chr3L 18772386 intron ftz-f1 - chr3L 18776750 intron ftz-f1 - chr3L 18781113 intron ftz-f1 - chr3L_28_18775001 chr3L_18775001 RAL-57 1469 chr3L 19008827 19008867 chr3L 19009190 19009230 jockey 27 362 15.0 15.5 15.2 1.7 403 chr3L 19008827 intron nkd - chr3L 19009028 intron nkd - chr3L 19009230 intron nkd - chr3L_27_19005001 chr3L_19005001 RAL-57 1473 chr3L 19117033 19117073 chr3L 19124502 19124545 mdg1 10 7466 3.5 6.0 4.8 1.7 7512 chr3L 19117033 intron CG14082 - chr3L 19120789 intron CG14082 - chr3L 19124545 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-57 1476 chr3L 19208042 19208089 chr3L 19209438 19209461 Doc 7 1394 2.0 0.5 1.2 3.2 1419 chr3L 19208042 intron fz2 - chr3L 19208752 intron fz2 - chr3L 19209461 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-57 1489 chr3L 19390097 19390103 chr3L 19390213 19390219 INE-1 4 115 11.5 3.5 7.5 0.5 122 chr3L 19390097 intron CG32206 - chr3L 19390158 intron CG32206 - chr3L 19390219 intron CG32206 - chr3L_4_19390001 chr3L_19390001 RAL-57 1494 chr3L 19820274 19820306 chr3L 19827848 19827880 412 26 7574 14.0 6.0 10.0 2.4 7606 chr3L 19820274 intron Deaf1 + chr3L 19824077 intron Deaf1 + chr3L 19827880 intron Deaf1 + chr3L_26_19820001 chr3L_19820001 RAL-57 1495 chr3L 19848483 19848535 chr3L 19857698 19857716 roo 23 9212 8.0 13.0 10.5 2.0 9233 chr3L 19848483 intron Papss + chr3L 19853100 intron Papss + chr3L 19857716 intron Papss + chr3L_23_19850001 chr3L_19850001 RAL-57 1496 chr3L 19861796 19861820 chr3L 19863609 19863633 S-element 7 1810 10.5 1.5 6.0 1.0 1837 chr3L 19861796 5` UTR CR45433 + chr3L 19862714 intergenic not near genes chr3L 19863633 intergenic not near genes chr3L_7_19860001 chr3L_19860001 RAL-57 1497 chr3L 19861824 19861850 chr3L 19863608 19863663 S-element 13 1810 6.0 1.5 3.8 2.7 1839 chr3L 19861824 5` UTR CR45433 + chr3L 19862744 intergenic not near genes chr3L 19863663 intergenic not near genes chr3L_13_19860001 chr3L_19860001 RAL-57 1499 chr3L 20113635 20113690 chr3L 20122917 20122972 roo 19 9282 5.5 4.0 4.8 3.3 9337 chr3L 20113635 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122972 intergenic not near genes chr3L_19_20115001 chr3L_20115001 RAL-57 1502 chr3L 20476733 20476764 chr3L 20484357 20484387 springer 5 7623 4.0 4.0 4.0 1.0 7654 chr3L 20476733 3` UTR isoQC + chr3L 20480560 intergenic not near genes chr3L 20484387 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-57 1505 chr3L 20590080 20590093 chr3L 20590613 20590641 412 4 539 3.5 2.5 3.0 1.0 561 chr3L 20590080 intergenic not near genes chr3L 20590360 intergenic not near genes chr3L 20590641 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-57 1508 chr3L 20821272 20821307 chr3L 20824766 20824800 NOF 7 3492 3.5 8.0 5.8 1.0 3528 chr3L 20821272 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824800 intron Pka-R1 + chr3L_7_20820001 chr3L_20820001 RAL-57 1514 chr3L 21014892 21014947 chr3L 21023398 21023433 Tirant 16 8491 9.0 6.5 7.8 1.8 8541 chr3L 21014892 intron skd - chr3L 21019162 intron skd - chr3L 21023433 intron skd - chr3L_16_21015001 chr3L_21015001 RAL-57 1517 chr3L 21151868 21151890 chr3L 21156977 21156999 flea 4 5109 7.0 5.5 6.2 0.6 5131 chr3L 21151868 intron Ac78C - chr3L 21154434 intron Ac78C - chr3L 21156999 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-57 1518 chr3L 21243742 21243754 chr3L 21251312 21251318 412 5 7569 12.0 6.0 9.0 0.5 7576 chr3L 21243742 intron Eip78C + chr3L 21247530 intron Eip78C + chr3L 21251318 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-57 1519 chr3L 21306127 21306180 chr3L 21315311 21315364 roo 13 9184 3.0 0.5 1.8 4.6 9237 chr3L 21306127 3` UTR CG7632 + chr3L 21310746 intron Pc - chr3L 21315364 3` UTR Pc - chr3L_13_21310001 chr3L_21310001 RAL-57 1521 chr3L 21361710 21361753 chr3L 21362689 21362722 G2 10 978 0.0 1.0 0.5 6.7 1012 chr3L 21361710 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362722 intergenic not near genes chr3L_10_21360001 chr3L_21360001 RAL-57 1522 chr3L 21372695 21372724 chr3L 21379228 21379257 McClintock 6 6533 6.0 3.5 4.8 1.0 6562 chr3L 21372695 intergenic not near genes chr3L 21375976 intergenic not near genes chr3L 21379257 intergenic not near genes chr3L_6_21375001 chr3L_21375001 RAL-57 1527 chr3L 21498827 21498870 chr3L 21500468 21500477 1360 15 1643 10.0 6.0 8.0 1.7 1650 chr3L 21498827 5` UTR,intron CR43933 +,Glg1 - chr3L 21499652 intron Glg1 - chr3L 21500477 intron Glg1 - chr3L_15_21495001 chr3L_21495001 RAL-57 1528 chr3L 21749317 21749325 chr3L 21754502 21754510 Doc 4 5184 14.5 15.5 15.0 0.2 5193 chr3L 21749317 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-57 1529 chr3L 21749326 21749349 chr3L 21754482 21754498 Doc 7 5168 8.0 8.0 8.0 0.8 5172 chr3L 21749326 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754498 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-57 1537 chr3L 21952428 21952483 chr3L 21953195 21953251 transib1 12 768 3.0 1.5 2.2 3.8 823 chr3L 21952428 intergenic not near genes chr3L 21952840 intergenic not near genes chr3L 21953251 intergenic not near genes chr3L_12_21950001 chr3L_21950001 RAL-57 1541 chr3L 22099661 22099681 chr3L 22105872 22105890 3S18 17 6210 17.5 10.0 13.8 1.1 6229 chr3L 22099661 intergenic not near genes chr3L 22102776 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_17_22100001 chr3L_22100001 RAL-57 1542 chr3L 22099682 22099702 chr3L 22105860 22105913 3S18 14 6199 9.5 6.0 7.8 1.6 6231 chr3L 22099682 intergenic not near genes chr3L 22102798 intergenic not near genes chr3L 22105913 intergenic not near genes chr3L_14_22100001 chr3L_22100001 RAL-57 1549 chr3L 22555763 22555797 chr3L 22563240 22563291 blood 13 7486 5.0 2.0 3.5 2.9 7528 chr3L 22555763 intergenic not near genes chr3L 22559527 intergenic not near genes chr3L 22563291 intergenic not near genes chr3L_13_22555001 chr3L_22555001 RAL-57 1550 chr3L 22577607 22577623 chr3L 22582420 22582433 Doc 8 4811 15.0 10.5 12.8 0.6 4826 chr3L 22577607 intergenic not near genes chr3L 22580020 intergenic not near genes chr3L 22582433 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-57 1551 chr3L 22577625 22577651 chr3L 22582410 22582424 Doc 22 4804 7.0 8.5 7.8 2.5 4799 chr3L 22577625 intergenic not near genes chr3L 22580024 intergenic not near genes chr3L 22582424 3` UTR CG14459 - chr3L_22_22580001 chr3L_22580001 RAL-57 1553 chr3L 22617176 22617211 chr3L 22624651 22624671 blood 4 7472 5.5 2.5 4.0 0.8 7495 chr3L 22617176 intron CG14459 - chr3L 22620924 intron CG14459 - chr3L 22624671 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-57 1557 chr3L 22865971 22866006 chr3L 22867129 22867164 Doc 12 1158 4.0 3.0 3.5 2.7 1193 chr3L 22865971 intron CG33170 + chr3L 22866568 intron CG33170 + chr3L 22867164 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-57 1571 chr3L 22982470 22982485 chr3L 22982893 22982908 INE-1 4 421 0.5 2.0 1.2 1.8 438 chr3L 22982470 intergenic not near genes chr3L 22982689 intergenic not near genes chr3L 22982908 intergenic not near genes chr3L_4_22980001 chr3L_22980001 RAL-57 1572 chr3L 22989858 22989888 chr3L 22996855 22996887 297 6 6998 2.0 4.5 3.2 1.4 7029 chr3L 22989858 intergenic not near genes chr3L 22993372 intergenic not near genes chr3L 22996887 intergenic not near genes chr3L_6_22990001 chr3L_22990001 RAL-57 1575 chr3L 24791876 24791912 chr3L 24796680 24796716 Doc 8 4804 2.5 7.0 4.8 1.4 4840 chr3L 24791876 intergenic not near genes chr3L 24794296 intergenic not near genes chr3L 24796716 intergenic not near genes chr3L_8_24790001 chr3L_24790001 RAL-57 1578 chr3L 23941244 23941245 chr3L 26882298 26882299 1360 5 2941054 8.0 0.0 4.0 1.0 2941055 chr3L 23941244 intron CG40470 - chr3L 25411772 intergenic not near genes chr3L 26882299 intergenic not near genes chr3L_5_25410001 chr3L_25410001 RAL-57 1579 chr3R 2446807 2446840 chr3R 2449031 2449066 1360 5 2225 18.0 26.5 22.2 0.2 2259 chr3R 2446807 intergenic not near genes chr3R 2447936 intergenic not near genes chr3R 2449066 intergenic not near genes chr3R_5_2445001 chr3R_2445001 RAL-57 1583 chr3R 4206044 4206100 chr3R 4211644 4211700 mdg3 18 5597 5.5 6.0 5.8 2.6 5656 chr3R 4206044 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211700 intron CG14636 - chr3R_18_4205001 chr3R_4205001 RAL-57 1584 chr3R 4366737 4366784 chr3R 4375145 4375192 roo 14 8408 4.5 4.5 4.5 2.5 8455 chr3R 4366737 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375192 5` UTR CR44922 + chr3R_14_4370001 chr3R_4370001 RAL-57 1585 chr3R 4408389 4408436 chr3R 4412718 4412765 Juan 23 4328 9.5 10.0 9.8 2.1 4376 chr3R 4408389 intron CG32944 - chr3R 4410577 intron CG32944 - chr3R 4412765 intron CG32944 - chr3R_23_4410001 chr3R_4410001 RAL-57 1586 chr3R 4609531 4609573 chr3R 4610715 4610761 1360 4 1188 1.0 1.0 1.0 2.0 1230 chr3R 4609531 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610761 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-57 1588 chr3R 4753221 4753245 chr3R 4757549 4757573 F-element 16 4326 18.0 20.0 19.0 0.8 4352 chr3R 4753221 intron,intron atms +,CG44098 - chr3R 4755397 intron,intron atms +,CG44098 - chr3R 4757573 intron,exon atms +,CG44098 - chr3R_16_4755001 chr3R_4755001 RAL-57 1589 chr3R 4753249 4753257 chr3R 4757545 4757585 F-element 10 4321 14.5 18.0 16.2 0.6 4336 chr3R 4753249 intron,intron atms +,CG44098 - chr3R 4755417 intron,intron atms +,CG44098 - chr3R 4757585 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-57 1592 chr3R 4887454 4887509 chr3R 4894856 4894911 rover 13 7396 5.5 6.5 6.0 1.9 7457 chr3R 4887454 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894911 intergenic not near genes chr3R_13_4890001 chr3R_4890001 RAL-57 1596 chr3R 5045828 5045868 chr3R 5052954 5052995 HMS-Beagle 8 7127 4.0 4.0 4.0 1.6 7167 chr3R 5045828 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052995 intergenic CR45588 - chr3R_8_5045001 chr3R_5045001 RAL-57 1597 chr3R 5067956 5068007 chr3R 5073498 5073549 mdg3 13 5542 6.5 6.0 6.2 1.8 5593 chr3R 5067956 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073549 intergenic not near genes chr3R_13_5070001 chr3R_5070001 RAL-57 1602 chr3R 5338375 5338416 chr3R 5343577 5343618 Rt1c 15 5202 5.0 5.5 5.2 2.4 5243 chr3R 5338375 intron mtd - chr3R 5340996 intron mtd - chr3R 5343618 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-57 1604 chr3R 5445935 5445990 chr3R 5452420 5452475 Burdock 21 6485 5.5 5.5 5.5 3.2 6540 chr3R 5445935 intron CG14669 + chr3R 5449205 intron CG14669 + chr3R 5452475 intron CG14669 + chr3R_21_5445001 chr3R_5445001 RAL-57 1609 chr3R 5745989 5746045 chr3R 5746255 5746311 pogo 32 266 7.5 5.5 6.5 4.3 322 chr3R 5745989 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746311 3` UTR Madm + chr3R_32_5745001 chr3R_5745001 RAL-57 1610 chr3R 5746991 5747040 chr3R 5753207 5753256 diver 27 6215 11.5 4.5 8.0 3.0 6265 chr3R 5746991 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753256 intergenic CG2091 - chr3R_27_5750001 chr3R_5750001 RAL-57 1612 chr3R 5809087 5809144 chr3R 5809353 5809410 pogo 36 265 8.5 8.0 8.2 3.9 323 chr3R 5809087 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809410 3` UTR CG11000 + chr3R_36_5805001 chr3R_5805001 RAL-57 1613 chr3R 5822357 5822399 chr3R 5823549 5823591 1360 27 1192 11.0 15.5 13.2 1.9 1234 chr3R 5822357 3` UTR CG2023 - chr3R 5822974 3` UTR CG2023 - chr3R 5823591 3` UTR CG2023 - chr3R_27_5820001 chr3R_5820001 RAL-57 1614 chr3R 5822402 5822408 chr3R 5823594 5823600 1360 6 1192 9.0 31.5 20.2 0.3 1198 chr3R 5822402 3` UTR CG2023 - chr3R 5823001 3` UTR CG2023 - chr3R 5823600 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-57 1617 chr3R 5927563 5927585 chr3R 5927805 5927838 pogo 7 242 2.5 5.0 3.8 1.5 275 chr3R 5927563 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927838 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-57 1620 chr3R 6015946 6015983 chr3R 6024448 6024488 Tirant 7 8496 4.0 5.5 4.8 1.2 8542 chr3R 6015946 intergenic not near genes chr3R 6020217 intergenic not near genes chr3R 6024488 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-57 1624 chr3R 6158495 6158531 chr3R 6167103 6167137 Tirant 15 8604 19.0 11.5 15.2 0.9 8642 chr3R 6158495 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167137 intergenic CG1077 + chr3R_15_6160001 chr3R_6160001 RAL-57 1625 chr3R 6175158 6175194 chr3R 6182455 6182489 HMS-Beagle2 12 7292 3.5 7.0 5.2 1.9 7331 chr3R 6175158 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182489 intergenic CR45194 + chr3R_12_6175001 chr3R_6175001 RAL-57 1627 chr3R 6206271 6206292 chr3R 6206510 6206533 BS 11 239 12.5 12.0 12.2 0.8 262 chr3R 6206271 exon Osi24 + chr3R 6206402 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-57 1628 chr3R 6206294 6206319 chr3R 6206508 6206542 BS 13 236 6.5 9.5 8.0 1.4 248 chr3R 6206294 exon Osi24 + chr3R 6206418 intron Osi24 + chr3R 6206542 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-57 1636 chr3R 6510003 6510050 chr3R 6515109 6515156 jockey 4 5106 1.0 3.5 2.2 1.2 5153 chr3R 6510003 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515156 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-57 1646 chr3R 6737495 6737527 chr3R 6739285 6739339 Doc 14 1804 6.5 7.5 7.0 1.8 1844 chr3R 6737495 intron pb - chr3R 6738417 intron pb - chr3R 6739339 intron pb - chr3R_14_6735001 chr3R_6735001 RAL-57 1663 chr3R 7694553 7694606 chr3R 7713639 7713692 invader3 12 19086 5.5 5.0 5.2 1.9 19139 chr3R 7694553 3` UTR Nlg1 + chr3R 7704122 intergenic not near genes chr3R 7713692 intergenic not near genes chr3R_12_7700001 chr3R_7700001 RAL-57 1664 chr3R 7729444 7729493 chr3R 7737407 7737453 Stalker2 15 7963 4.0 6.5 5.2 2.4 8009 chr3R 7729444 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737453 intergenic not near genes chr3R_15_7730001 chr3R_7730001 RAL-57 1666 chr3R 7973311 7973341 chr3R 7974398 7974428 1360 6 1087 1.0 3.0 2.0 2.0 1117 chr3R 7973311 intergenic not near genes chr3R 7973870 intergenic not near genes chr3R 7974428 3` UTR CD98hc - chr3R_6_7970001 chr3R_7970001 RAL-57 1671 chr3R 8090540 8090558 chr3R 8094042 8094060 297 5 3502 7.5 7.0 7.2 0.6 3520 chr3R 8090540 intergenic CR44330 + chr3R 8092300 intergenic not near genes chr3R 8094060 intergenic CG7900 + chr3R_5_8090001 chr3R_8090001 RAL-57 1672 chr3R 8101751 8101788 chr3R 8104860 8104868 G2 4 3102 1.5 3.0 2.2 1.2 3117 chr3R 8101751 exon CG7900 + chr3R 8103310 intron CG7900 + chr3R 8104868 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-57 1673 chr3R 8207539 8207584 chr3R 8208409 8208454 F-element 5 868 4.5 2.0 3.2 1.2 915 chr3R 8207539 intergenic not near genes chr3R 8207996 intergenic not near genes chr3R 8208454 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-57 1676 chr3R 8402995 8403000 chr3R 8412171 8412190 roo 4 9183 10.0 10.5 10.2 0.4 9195 chr3R 8402995 intron CG45263 - chr3R 8407592 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-57 1677 chr3R 8403010 8403038 chr3R 8412171 8412228 roo 5 9178 5.0 10.5 7.8 0.6 9218 chr3R 8403010 intron CG45263 - chr3R 8407619 intron CG45263 - chr3R 8412228 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-57 1679 chr3R 8570477 8570505 chr3R 8575137 8575165 HMS-Beagle 8 4660 0.0 7.5 3.8 1.7 4688 chr3R 8570477 intergenic not near genes chr3R 8572821 intergenic not near genes chr3R 8575165 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-57 1680 chr3R 8601759 8601790 chr3R 8610937 8610964 roo 4 9177 2.0 1.0 1.5 1.6 9205 chr3R 8601759 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610964 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-57 1681 chr3R 8707340 8707382 chr3R 8709804 8709807 jockey 17 2463 5.5 7.5 6.5 2.3 2467 chr3R 8707340 intergenic not near genes chr3R 8708574 intergenic not near genes chr3R 8709807 intergenic not near genes chr3R_17_8705001 chr3R_8705001 RAL-57 1688 chr3R 9319567 9319594 chr3R 9320010 9320054 jockey 5 457 4.0 2.0 3.0 1.2 487 chr3R 9319567 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320054 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-57 1690 chr3R 9361806 9361835 chr3R 9362072 9362101 pogo 5 266 2.5 4.0 3.2 1.2 295 chr3R 9361806 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362101 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-57 1697 chr3R 10231736 10231812 chr3R 10237363 10237414 mdg3 16 5609 0.0 4.0 2.0 5.3 5678 chr3R 10231736 intron CG42795 + chr3R 10234575 intron CG42795 + chr3R 10237414 intron CG42795 + chr3R_16_10230001 chr3R_10230001 RAL-57 1698 chr3R 10255361 10255377 chr3R 10260826 10260842 I-element 7 5465 7.0 10.5 8.8 0.7 5481 chr3R 10255361 3` UTR Sirt6 - chr3R 10258102 intron Sirt6 - chr3R 10260842 exon Sirt6 - chr3R_7_10255001 chr3R_10255001 RAL-57 1723 chr3R 11379213 11379253 chr3R 11388392 11388433 roo 23 9179 12.5 7.5 10.0 2.1 9220 chr3R 11379213 intron pros + chr3R 11383823 intron pros + chr3R 11388433 intron pros + chr3R_23_11380001 chr3R_11380001 RAL-57 1732 chr3R 11957830 11957869 chr3R 11958138 11958162 S-element 10 303 4.5 0.5 2.5 2.9 332 chr3R 11957830 intergenic not near genes chr3R 11957996 intergenic not near genes chr3R 11958162 intergenic not near genes chr3R_10_11955001 chr3R_11955001 RAL-57 1751 chr3R 12920131 12920169 chr3R 12925359 12925397 copia 7 5228 2.0 2.5 2.2 2.2 5266 chr3R 12920131 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925397 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-57 1758 chr3R 13135804 13135858 chr3R 13138004 13138058 pogo 10 2200 3.0 2.5 2.8 2.6 2254 chr3R 13135804 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136931 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138058 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13135001 chr3R_13135001 RAL-57 1759 chr3R 13143054 13143060 chr3R 13148629 13148662 mdg3 4 5590 3.0 4.0 3.5 0.9 5608 chr3R 13143054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145858 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148662 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-57 1774 chr3R 13517241 13517257 chr3R 13520082 13520099 jockey 9 2842 4.5 2.5 3.5 2.0 2858 chr3R 13517241 intergenic not near genes chr3R 13518670 intergenic not near genes chr3R 13520099 intergenic not near genes chr3R_9_13515001 chr3R_13515001 RAL-57 1783 chr3R 14021623 14021680 chr3R 14023464 14023522 S-element 12 1841 6.5 1.0 3.8 2.5 1899 chr3R 14021623 intron rdx - chr3R 14022572 intron rdx - chr3R 14023522 intron rdx - chr3R_12_14020001 chr3R_14020001 RAL-57 1792 chr3R 14180786 14180845 chr3R 14185576 14185633 F-element 15 4787 2.5 2.5 2.5 4.3 4847 chr3R 14180786 intron Dop1R1 - chr3R 14183210 intron Dop1R1 - chr3R 14185633 intron Dop1R1 - chr3R_15_14180001 chr3R_14180001 RAL-57 1795 chr3R 14246391 14246406 chr3R 14247890 14247927 jockey 5 1513 10.5 4.5 7.5 0.6 1536 chr3R 14246391 intergenic not near genes chr3R 14247159 intergenic not near genes chr3R 14247927 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-57 1796 chr3R 14246409 14246417 chr3R 14247886 14247900 jockey 6 1502 8.5 3.5 6.0 0.9 1491 chr3R 14246409 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247900 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-57 1809 chr3R 15059255 15059477 chr3R 15059474 15059589 BS 13 228 0.0 0.0 0.0 13.0 334 chr3R 15059255 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059589 intron dpr9 - chr3R_13_15055001 chr3R_15055001 RAL-57 1810 chr3R 15079791 15079836 chr3R 15080056 15080100 pogo 12 266 7.0 4.5 5.8 1.8 309 chr3R 15079791 3` UTR CG6966 - chr3R 15079946 3` UTR CG6966 - chr3R 15080100 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-57 1811 chr3R 15102475 15102524 chr3R 15109755 15109804 412 16 7280 5.0 6.0 5.5 2.5 7329 chr3R 15102475 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109804 intron CG42788 - chr3R_16_15105001 chr3R_15105001 RAL-57 1813 chr3R 15132042 15132074 chr3R 15135127 15135159 Juan 10 3085 8.0 8.0 8.0 1.1 3117 chr3R 15132042 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135159 3` UTR CG6912 - chr3R_10_15130001 chr3R_15130001 RAL-57 1814 chr3R 15162527 15162562 chr3R 15167317 15167354 F-element 6 4792 4.5 1.5 3.0 1.5 4827 chr3R 15162527 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167354 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-57 1825 chr3R 15601145 15601195 chr3R 15608692 15608742 412 7 7546 1.5 3.0 2.2 2.2 7597 chr3R 15601145 intergenic not near genes chr3R 15604944 intergenic not near genes chr3R 15608742 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-57 1829 chr3R 15735220 15735228 chr3R 15739965 15739973 F-element 4 4745 1.0 2.5 1.8 1.4 4753 chr3R 15735220 intergenic not near genes chr3R 15737596 intergenic not near genes chr3R 15739973 intergenic not near genes chr3R_4_15735001 chr3R_15735001 RAL-57 1846 chr3R 16756298 16756331 chr3R 16762514 16762545 diver 6 6216 4.0 2.5 3.2 1.4 6247 chr3R 16756298 intron bxd - chr3R 16759422 intron bxd - chr3R 16762545 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-57 1857 chr3R 17294648 17294701 chr3R 17295100 17295158 BS 7 455 4.0 0.0 2.0 2.3 510 chr3R 17294648 intergenic not near genes chr3R 17294903 intergenic not near genes chr3R 17295158 intergenic not near genes chr3R_7_17290001 chr3R_17290001 RAL-57 1858 chr3R 17346686 17346710 chr3R 17348274 17348298 F-element 5 1588 0.5 3.0 1.8 1.8 1612 chr3R 17346686 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348298 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-57 1872 chr3R 17638313 17638338 chr3R 17638807 17638849 roo 4 507 0.0 1.5 0.8 2.2 536 chr3R 17638313 intron CG43175 + chr3R 17638581 intron CG43175 + chr3R 17638849 intron,intron CG43175 +,CR45222 + chr3R_4_17635001 chr3R_17635001 RAL-57 1879 chr3R 17925853 17925879 chr3R 17927319 17927351 hobo 6 1482 2.5 5.0 3.8 1.2 1498 chr3R 17925853 intron cpo + chr3R 17926602 intron cpo + chr3R 17927351 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-57 1881 chr3R 18061580 18061603 chr3R 18063173 18063195 F-element 4 1593 1.0 1.5 1.2 1.8 1615 chr3R 18061580 intergenic not near genes chr3R 18062388 intergenic not near genes chr3R 18063195 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-57 1916 chr3R 20156674 20156719 chr3R 20165869 20165914 roo 4 9195 1.5 2.5 2.0 1.3 9240 chr3R 20156674 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165914 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-57 1918 chr3R 20245249 20245301 chr3R 20248887 20248937 F-element 14 3636 5.0 3.0 4.0 2.8 3688 chr3R 20245249 3` UTR Nlg4 + chr3R 20247093 intergenic not near genes chr3R 20248937 intergenic not near genes chr3R_14_20245001 chr3R_20245001 RAL-57 1919 chr3R 20266501 20266528 chr3R 20272996 20273024 Burdock 7 6496 0.5 5.0 2.8 1.8 6523 chr3R 20266501 intron cic + chr3R 20269762 intron cic + chr3R 20273024 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-57 1920 chr3R 20330976 20331016 chr3R 20331487 20331527 roo 7 511 5.5 4.5 5.0 1.2 551 chr3R 20330976 intergenic Sirt2 + chr3R 20331252 intergenic Sirt2 + chr3R 20331527 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-57 1925 chr3R 20512981 20513032 chr3R 20515709 20515760 opus 10 2728 3.0 0.0 1.5 4.0 2779 chr3R 20512981 intergenic not near genes chr3R 20514370 intergenic not near genes chr3R 20515760 intergenic not near genes chr3R_10_20510001 chr3R_20510001 RAL-57 1936 chr3R 20841735 20841741 chr3R 20868569 20868576 Doc 4 26835 9.0 16.0 12.5 0.3 26841 chr3R 20841735 intergenic CG15695 + chr3R 20855156 intron Ir93a - chr3R 20868576 intergenic not near genes chr3R_4_20855001 chr3R_20855001 RAL-57 1939 chr3R 20854446 20854512 chr3R 20859266 20859309 Doc 4 4798 1.5 4.0 2.8 1.1 4863 chr3R 20854446 intron Ir93a - chr3R 20856878 intron Ir93a - chr3R 20859309 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-57 1945 chr3R 21141665 21141669 chr3R 21150156 21150172 Tirant 4 8494 8.0 6.5 7.2 0.5 8507 chr3R 21141665 intron SNF4Agamma + chr3R 21145918 intron SNF4Agamma + chr3R 21150172 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-57 1946 chr3R 21141670 21141706 chr3R 21150154 21150210 Tirant 9 8493 2.5 6.0 4.2 1.7 8540 chr3R 21141670 intron SNF4Agamma + chr3R 21145940 intron SNF4Agamma + chr3R 21150210 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-57 1961 chr3R 21761098 21761155 chr3R 21768514 21768542 mdg1 26 7408 4.5 11.0 7.8 3.0 7444 chr3R 21761098 exon CG42335 + chr3R 21764820 intron CG42335 + chr3R 21768542 exon CG42335 + chr3R_26_21760001 chr3R_21760001 RAL-57 2017 chr3R 22239466 22239511 chr3R 22248551 22248584 roo 5 9077 4.5 0.0 2.2 1.6 9118 chr3R 22239466 intron SKIP + chr3R 22244025 intron SKIP + chr3R 22248584 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-57 2025 chr3R 22450524 22450569 chr3R 22453186 22453234 NOF 11 2663 9.0 5.5 7.2 1.3 2710 chr3R 22450524 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453234 intron CG34376 + chr3R_11_22450001 chr3R_22450001 RAL-57 2050 chr3R 23558373 23558396 chr3R 23560179 23560202 Bari1 7 1806 2.5 0.0 1.2 3.2 1829 chr3R 23558373 intron beat-IV + chr3R 23559288 intron beat-IV + chr3R 23560202 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-57 2055 chr3R 23684670 23684725 chr3R 23685181 23685205 roo 25 492 11.0 6.5 8.8 2.6 535 chr3R 23684670 exon CG18754 + chr3R 23684938 intron CG18754 + chr3R 23685205 exon CG18754 + chr3R_25_23680001 chr3R_23680001 RAL-57 2056 chr3R 23835396 23835407 chr3R 23844570 23844582 roo 4 9175 4.0 1.5 2.8 1.1 9186 chr3R 23835396 intron CG34355 + chr3R 23839989 intron CG34355 + chr3R 23844582 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-57 2057 chr3R 23851062 23851087 chr3R 23858754 23858779 opus 7 7692 4.5 7.5 6.0 1.0 7717 chr3R 23851062 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858779 intergenic not near genes chr3R_7_23850001 chr3R_23850001 RAL-57 2066 chr3R 24072062 24072074 chr3R 24072525 24072536 jockey 6 462 33.5 0.5 17.0 0.3 474 chr3R 24072062 intron 4EHP - chr3R 24072299 intron 4EHP - chr3R 24072536 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-57 2067 chr3R 24072075 24072081 chr3R 24072524 24072531 jockey 4 456 30.5 0.5 15.5 0.2 456 chr3R 24072075 intron 4EHP - chr3R 24072303 intron 4EHP - chr3R 24072531 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-57 2068 chr3R 24072085 24072123 chr3R 24072523 24072584 jockey 14 448 12.5 0.5 6.5 1.9 499 chr3R 24072085 intron 4EHP - chr3R 24072334 intron 4EHP - chr3R 24072584 intron 4EHP - chr3R_14_24070001 chr3R_24070001 RAL-57 2070 chr3R 24076905 24076944 chr3R 24078396 24078411 hobo 8 1482 6.5 9.0 7.8 0.9 1506 chr3R 24076905 intron 4EHP - chr3R 24077658 intron 4EHP - chr3R 24078411 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-57 2075 chr3R 24207195 24207242 chr3R 24212296 24212328 flea 15 5100 5.0 5.5 5.2 2.4 5133 chr3R 24207195 intron twin - chr3R 24209762 intron twin - chr3R 24212328 intron twin - chr3R_15_24205001 chr3R_24205001 RAL-57 2079 chr3R 24493260 24493306 chr3R 24493512 24493592 BS 8 275 2.5 0.0 1.2 3.6 332 chr3R 24493260 intergenic not near genes chr3R 24493426 intergenic not near genes chr3R 24493592 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-57 2086 chr3R 24730078 24730096 chr3R 24732479 24732487 Doc 10 2398 17.0 1.0 9.0 1.0 2409 chr3R 24730078 intron tok + chr3R 24731282 intron tok + chr3R 24732487 intron tok + chr3R_10_24730001 chr3R_24730001 RAL-57 2093 chr3R 24927108 24927144 chr3R 24931923 24931960 Doc 29 4815 14.0 15.0 14.5 1.9 4852 chr3R 24927108 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931960 intergenic CG11771 + chr3R_29_24925001 chr3R_24925001 RAL-57 2094 chr3R 24927145 24927162 chr3R 24931911 24931943 Doc 8 4802 10.0 13.0 11.5 0.6 4798 chr3R 24927145 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-57 2104 chr3R 25725810 25725852 chr3R 25734995 25735037 roo 8 9184 2.0 1.0 1.5 3.2 9227 chr3R 25725810 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735037 intron LpR2 - chr3R_8_25730001 chr3R_25730001 RAL-57 2112 chr3R 25832674 25832693 chr3R 25841879 25841900 roo 5 9207 8.0 3.5 5.8 0.7 9226 chr3R 25832674 exon alpha4GT2 + chr3R 25837287 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-57 2113 chr3R 25832701 25832709 chr3R 25841873 25841910 roo 4 9197 4.5 3.0 3.8 0.8 9209 chr3R 25832701 exon alpha4GT2 + chr3R 25837306 intron alpha4GT2 + chr3R 25841910 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-57 2124 chr3R 26510483 26510508 chr3R 26519569 26519594 roo 5 9086 4.0 1.0 2.5 1.4 9111 chr3R 26510483 intron plum - chr3R 26515038 intron plum - chr3R 26519594 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-57 2125 chr3R 26558304 26558360 chr3R 26565642 26565695 Stalker4 18 7328 4.0 3.5 3.8 3.8 7391 chr3R 26558304 intron scrib + chr3R 26562000 intron scrib + chr3R 26565695 intron scrib + chr3R_18_26560001 chr3R_26560001 RAL-57 2134 chr3R 26810535 26810582 chr3R 26811045 26811090 roo 6 509 2.5 4.5 3.5 1.3 555 chr3R 26810535 intron Tl + chr3R 26810812 intron Tl + chr3R 26811090 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-57 2142 chr3R 27140490 27140539 chr3R 27148125 27148173 412 28 7633 7.5 4.5 6.0 4.0 7683 chr3R 27140490 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148173 intron CG6051 - chr3R_28_27140001 chr3R_27140001 RAL-57 2150 chr3R 27342770 27342818 chr3R 27351376 27351418 Tirant 24 8605 9.0 7.0 8.0 2.7 8648 chr3R 27342770 intron CG42534 + chr3R 27347094 intron CG42534 + chr3R 27351418 intron CG42534 + chr3R_24_27345001 chr3R_27345001 RAL-57 2158 chr3R 27521139 27521185 chr3R 27530373 27530418 roo 25 9234 8.0 7.0 7.5 2.9 9279 chr3R 27521139 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530418 intron CG12885 + chr3R_25_27525001 chr3R_27525001 RAL-57 2161 chr3R 27725544 27725590 chr3R 27731010 27731056 I-element 14 5467 5.5 4.5 5.0 2.3 5512 chr3R 27725544 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731056 intergenic not near genes chr3R_14_27725001 chr3R_27725001 RAL-57 2164 chr3R 27856734 27856788 chr3R 27858242 27858291 hopper2 12 1503 5.0 4.0 4.5 2.2 1557 chr3R 27856734 intron CG34353 - chr3R 27857512 intron CG34353 - chr3R 27858291 intron CG34353 - chr3R_12_27855001 chr3R_27855001 RAL-57 2166 chr3R 27875706 27875729 chr3R 27882786 27882808 297 6 7080 1.5 2.5 2.0 2.0 7102 chr3R 27875706 intron CG34353 - chr3R 27879257 intron CG34353 - chr3R 27882808 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-57 2170 chr3R 28068478 28068524 chr3R 28073943 28073973 I-element 25 5465 1.5 11.0 6.2 3.5 5495 chr3R 28068478 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073973 intron CG34362 + chr3R_25_28070001 chr3R_28070001 RAL-57 2173 chr3R 28173655 28173690 chr3R 28181110 28181145 mdg1 8 7455 3.0 3.5 3.2 1.9 7490 chr3R 28173655 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181145 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-57 2174 chr3R 28253331 28253347 chr3R 28255866 28255881 jockey 4 2534 8.0 4.5 6.2 0.6 2550 chr3R 28253331 intergenic not near genes chr3R 28254606 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-57 2175 chr3R 28253348 28253368 chr3R 28255865 28255903 jockey 8 2533 4.5 4.5 4.5 1.5 2555 chr3R 28253348 intergenic not near genes chr3R 28254626 intergenic not near genes chr3R 28255903 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-57 2187 chr3R 28792853 28792896 chr3R 28797972 28797988 jockey 7 5105 2.5 1.5 2.0 2.3 5135 chr3R 28792853 intergenic not near genes chr3R 28795420 intergenic not near genes chr3R 28797988 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-57 2200 chr3R 29079366 29079401 chr3R 29080763 29080797 NOF 9 1396 6.5 5.5 6.0 1.3 1431 chr3R 29079366 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080797 intron CG11873 + chr3R_9_29080001 chr3R_29080001 RAL-57 2209 chr3R 29319825 29319850 chr3R 29320169 29320194 jockey 11 344 3.5 12.5 8.0 1.2 369 chr3R 29319825 intergenic Cnx99A - chr3R 29320010 intergenic Cnx99A - chr3R 29320194 intergenic not near genes chr3R_11_29320001 chr3R_29320001 RAL-57 2212 chr3R 29406611 29406614 chr3R 29407905 29407924 jockey 5 1306 21.0 13.0 17.0 0.3 1313 chr3R 29406611 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407924 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-57 2213 chr3R 29406615 29406643 chr3R 29407900 29407907 jockey 29 1300 12.0 12.5 12.2 2.2 1292 chr3R 29406615 intron Ptp99A + chr3R 29407261 intron Ptp99A + chr3R 29407907 intron Ptp99A + chr3R_29_29405001 chr3R_29405001 RAL-57 2228 chr3R 29760336 29760379 chr3R 29761562 29761605 pogo 12 1225 4.5 6.0 5.2 1.9 1269 chr3R 29760336 intergenic not near genes chr3R 29760970 intergenic not near genes chr3R 29761605 intergenic not near genes chr3R_12_29760001 chr3R_29760001 RAL-57 2230 chr3R 29881999 29882047 chr3R 29891181 29891229 roo 21 9182 6.5 9.5 8.0 2.3 9230 chr3R 29881999 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891229 intron CG31038 + chr3R_21_29885001 chr3R_29885001 RAL-57 2240 chr3R 30396195 30396244 chr3R 30404485 30404535 roo 24 8290 9.0 10.5 9.8 2.2 8340 chr3R 30396195 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404535 5` UTR CR45570 + chr3R_24_30400001 chr3R_30400001 RAL-57 2245 chr3R 30480453 30480509 chr3R 30482940 30482988 jockey 20 2485 4.0 8.0 6.0 2.9 2535 chr3R 30480453 intron PH4alphaEFB + chr3R 30481720 intron PH4alphaEFB + chr3R 30482988 intron PH4alphaEFB + chr3R_20_30480001 chr3R_30480001 RAL-57 2255 chr3R 30818787 30818840 chr3R 30820377 30820430 1360 36 1589 11.0 8.5 9.8 3.3 1643 chr3R 30818787 intron cindr + chr3R 30819608 intron cindr + chr3R 30820430 intron cindr + chr3R_36_30815001 chr3R_30815001 RAL-57 2260 chr3R 31074213 31074258 chr3R 31081831 31081881 springer 13 7623 10.0 8.0 9.0 1.3 7668 chr3R 31074213 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081881 intron Sox100B + chr3R_13_31075001 chr3R_31075001 RAL-57 2261 chr3R 31279381 31279401 chr3R 31285587 31285617 diver 6 6214 1.5 6.0 3.8 1.2 6236 chr3R 31279381 intergenic not near genes chr3R 31282499 intergenic not near genes chr3R 31285617 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-57 2263 chr3R 31413067 31413102 chr3R 31418291 31418326 copia 5 5224 3.0 1.0 2.0 1.7 5259 chr3R 31413067 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418326 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-57 2270 chr3R 31691511 31691561 chr3R 31696302 31696351 Doc 25 4788 7.0 12.5 9.8 2.3 4840 chr3R 31691511 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696351 intergenic not near genes chr3R_25_31690001 chr3R_31690001 RAL-57 2280 chr3R 31997988 31998012 chr3R 32005483 32005494 blood 5 7491 0.0 2.0 1.0 2.5 7506 chr3R 31997988 intron heph - chr3R 32001741 intron heph - chr3R 32005494 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-57 2284 chrX 318459 318475 chrX 323570 323586 flea 4 5111 2.5 2.5 2.5 1.1 5127 chrX 318459 intron,intron CG3777 +,CG32816 - chrX 321022 intron,intron CG3777 +,CG32816 - chrX 323586 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-57 2286 chrX 551405 551435 chrX 558990 559021 412 5 7586 4.0 3.0 3.5 1.1 7616 chrX 551405 intron Appl + chrX 555213 intron Appl + chrX 559021 intron Appl + chrX_5_555001 chrX_555001 RAL-57 2294 chrX 812251 812297 chrX 817901 817951 297 15 5652 3.0 4.5 3.8 3.1 5700 chrX 812251 intron CG43867 - chrX 815101 intron CG43867 - chrX 817951 intron CG43867 - chrX_15_815001 chrX_815001 RAL-57 2296 chrX 827580 827630 chrX 835397 835467 roo 7 7826 3.0 0.0 1.5 2.8 7887 chrX 827580 intron CG43867 - chrX 831524 intron CG43867 - chrX 835467 intron CG43867 - chrX_7_830001 chrX_830001 RAL-57 2297 chrX 906692 906719 chrX 908505 908532 S-element 9 1814 4.0 3.0 3.5 2.0 1840 chrX 906692 intron CG43867 - chrX 907612 intron CG43867 - chrX 908532 intron CG43867 - chrX_9_905001 chrX_905001 RAL-57 2300 chrX 1063734 1063748 chrX 1072552 1072566 roo 8 8818 13.5 8.0 10.8 0.7 8832 chrX 1063734 intron CR44779 + chrX 1068150 intron CR44779 + chrX 1072566 intron CR44779 + chrX_8_1065001 chrX_1065001 RAL-57 2305 chrX 1357753 1357806 chrX 1367948 1368001 Doc 35 10194 7.0 14.0 10.5 3.0 10248 chrX 1357753 intergenic png - chrX 1362877 intergenic not near genes chrX 1368001 intergenic not near genes chrX_35_1360001 chrX_1360001 RAL-57 2308 chrX 1518023 1518072 chrX 1523443 1523463 jockey 19 5416 5.0 6.0 5.5 2.9 5440 chrX 1518023 intergenic inc + chrX 1520743 intergenic not near genes chrX 1523463 intergenic not near genes chrX_19_1520001 chrX_1520001 RAL-57 2310 chrX 1627964 1627974 chrX 1635444 1635455 gtwin 6 7485 22.5 17.0 19.8 0.3 7491 chrX 1627964 intron,intron Mur2B -,br + chrX 1631710 intron,intron Mur2B -,br + chrX 1635455 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-57 2311 chrX 1930514 1930568 chrX 1938110 1938110 opus 22 7590 3.0 3.5 3.2 5.2 7596 chrX 1930514 3` UTR CG11596 + chrX 1934312 intergenic not near genes chrX 1938110 3` UTR CG3857 - chrX_22_1930001 chrX_1930001 RAL-57 2312 chrX 1954862 1954916 chrX 1962826 1962863 Stalker2 17 7946 14.0 6.0 10.0 1.5 8001 chrX 1954862 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962863 intron Hr4 + chrX_17_1955001 chrX_1955001 RAL-57 2319 chrX 2399817 2399864 chrX 2408189 2408230 roo 16 8363 11.5 12.0 11.8 1.2 8413 chrX 2399817 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408230 intergenic not near genes chrX_16_2400001 chrX_2400001 RAL-57 2322 chrX 2610367 2610414 chrX 2617507 2617556 HMS-Beagle 12 7142 10.0 7.0 8.5 1.3 7189 chrX 2610367 intergenic CG8636 - chrX 2613962 intergenic not near genes chrX 2617556 intergenic Tsp3A - chrX_12_2610001 chrX_2610001 RAL-57 2323 chrX 2664364 2664406 chrX 2665535 2665570 1360 13 1168 3.0 7.0 5.0 2.2 1206 chrX 2664364 intron sgg + chrX 2664967 intron sgg + chrX 2665570 intron sgg + chrX_13_2660001 chrX_2660001 RAL-57 2328 chrX 3075608 3075661 chrX 3080940 3080992 Transpac 9 5331 0.5 2.0 1.2 4.1 5384 chrX 3075608 intron kirre + chrX 3078300 intron kirre + chrX 3080992 intron kirre + chrX_9_3075001 chrX_3075001 RAL-57 2333 chrX 3415011 3415048 chrX 3421221 3421258 3S18 6 6209 1.5 5.5 3.5 1.3 6247 chrX 3415011 intron,intron CR44999 +,CG12535 - chrX 3418134 intron,intron CR44999 +,CG12535 - chrX 3421258 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-57 2334 chrX 3597538 3597574 chrX 3619730 3619749 roo 6 22188 3.5 1.5 2.5 1.7 22211 chrX 3597538 intron AstA-R1 + chrX 3608644 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-57 2336 chrX 3726738 3726794 chrX 3730160 3730190 NOF 10 3419 3.0 5.0 4.0 2.0 3452 chrX 3726738 intron tlk + chrX 3728464 intron tlk + chrX 3730190 intron tlk + chrX_10_3725001 chrX_3725001 RAL-57 2342 chrX 3986837 3986883 chrX 3994495 3994541 412 12 7658 7.0 1.0 4.0 2.4 7704 chrX 3986837 intergenic not near genes chrX 3990689 intergenic not near genes chrX 3994541 intergenic not near genes chrX_12_3990001 chrX_3990001 RAL-57 2346 chrX 4157872 4157903 chrX 4164950 4164981 297 10 7078 8.0 4.5 6.2 1.4 7109 chrX 4157872 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164981 intron Fas2 - chrX_10_4160001 chrX_4160001 RAL-57 2357 chrX 4700366 4700422 chrX 4700734 4700790 jockey 11 368 4.0 4.5 4.2 2.1 424 chrX 4700366 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700790 3` UTR ctp + chrX_11_4700001 chrX_4700001 RAL-57 2359 chrX 4731794 4731811 chrX 4736911 4736912 jockey 5 5114 3.5 3.5 3.5 1.1 5118 chrX 4731794 intergenic not near genes chrX 4734353 intergenic not near genes chrX 4736912 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-57 2360 chrX 4792360 4792391 chrX 4792814 4792844 jockey 7 456 4.0 3.5 3.8 1.5 484 chrX 4792360 intergenic not near genes chrX 4792602 intergenic not near genes chrX 4792844 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-57 2361 chrX 4827951 4827994 chrX 4835347 4835371 Stalker4 7 7380 4.5 3.0 3.8 1.5 7420 chrX 4827951 intergenic not near genes chrX 4831661 intergenic not near genes chrX 4835371 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-57 2362 chrX 4827996 4828001 chrX 4835344 4835372 Stalker4 6 7360 3.0 3.0 3.0 1.5 7376 chrX 4827996 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835372 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-57 2365 chrX 5096254 5096302 chrX 5103844 5103889 springer 14 7588 3.0 5.5 4.2 2.7 7635 chrX 5096254 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103889 intron,intron CG15465 +,rg + chrX_14_5100001 chrX_5100001 RAL-57 2368 chrX 5338684 5338735 chrX 5339962 5339991 jockey 25 1273 9.5 7.0 8.2 2.7 1307 chrX 5338684 intergenic not near genes chrX 5339338 intergenic not near genes chrX 5339991 intergenic SK + chrX_25_5335001 chrX_5335001 RAL-57 2372 chrX 5524825 5524851 chrX 5528704 5528739 412 6 3882 12.5 1.0 6.8 0.8 3914 chrX 5524825 intergenic snoRNA:Psi28S-3342 - chrX 5526782 intergenic not near genes chrX 5528739 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-57 2375 chrX 5727402 5727415 chrX 5732166 5732179 Doc 9 4763 11.0 7.5 9.2 0.9 4777 chrX 5727402 intron CG32758 - chrX 5729790 intron CG32758 - chrX 5732179 intron CG32758 - chrX_9_5725001 chrX_5725001 RAL-57 2376 chrX 5883795 5883837 chrX 5884050 5884103 pogo 21 265 6.5 4.0 5.2 3.4 308 chrX 5883795 intron CR45668 - chrX 5883949 intron CR45668 - chrX 5884103 intron CR45668 - chrX_21_5880001 chrX_5880001 RAL-57 2377 chrX 5884145 5884189 chrX 5884411 5884455 pogo 12 266 12.5 7.0 9.8 1.1 310 chrX 5884145 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884455 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-57 2378 chrX 5884073 5884115 chrX 5884444 5884487 pogo 13 372 22.0 15.0 18.5 0.7 414 chrX 5884073 intron CR45668 - chrX 5884280 intron CR45668 - chrX 5884487 intron CR45668 - chrX_13_5880001 chrX_5880001 RAL-57 2380 chrX 6171564 6171587 chrX 6179022 6179029 Quasimodo 6 7454 13.0 10.0 11.5 0.5 7465 chrX 6171564 intron Ca-alpha1T - chrX 6175296 intron Ca-alpha1T - chrX 6179029 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-57 2381 chrX 6171589 6171613 chrX 6179018 6179071 Quasimodo 14 7451 7.0 8.5 7.8 1.6 7482 chrX 6171589 intron Ca-alpha1T - chrX 6175330 intron Ca-alpha1T - chrX 6179071 intron Ca-alpha1T - chrX_14_6175001 chrX_6175001 RAL-57 2384 chrX 6335215 6335233 chrX 6337733 6337768 Tirant 5 2532 1.0 4.5 2.8 1.3 2553 chrX 6335215 intergenic not near genes chrX 6336492 intergenic not near genes chrX 6337768 5` UTR CG3842 + chrX_5_6335001 chrX_6335001 RAL-57 2386 chrX 6392853 6392894 chrX 6397643 6397684 Doc 8 4786 3.5 6.5 5.0 1.3 4831 chrX 6392853 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397684 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-57 2390 chrX 6562797 6562850 chrX 6571304 6571338 Tirant 17 8503 5.5 7.5 6.5 2.3 8541 chrX 6562797 intron CG34417 + chrX 6567068 intron CG34417 + chrX 6571338 intron CG34417 + chrX_17_6565001 chrX_6565001 RAL-57 2399 chrX 7023578 7023630 chrX 7030993 7031025 Tabor 16 7411 2.0 3.5 2.8 4.2 7447 chrX 7023578 intron CG12541 - chrX 7027302 intron CG12541 - chrX 7031025 intron CG12541 - chrX_16_7025001 chrX_7025001 RAL-57 2400 chrX 7125220 7125254 chrX 7134404 7134438 roo 6 9184 1.0 0.5 0.8 3.3 9218 chrX 7125220 intergenic not near genes chrX 7129829 intergenic not near genes chrX 7134438 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-57 2403 chrX 7702884 7702918 chrX 7703347 7703382 jockey 10 464 5.5 6.0 5.8 1.5 498 chrX 7702884 intron CHES-1-like - chrX 7703133 intron CHES-1-like - chrX 7703382 intron CHES-1-like - chrX_10_7700001 chrX_7700001 RAL-57 2406 chrX 7845701 7845742 chrX 7847252 7847293 hopper2 8 1550 3.0 3.0 3.0 2.0 1592 chrX 7845701 intergenic not near genes chrX 7846497 intergenic not near genes chrX 7847293 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-57 2409 chrX 8031404 8031444 chrX 8035738 8035748 Juan 6 4328 1.5 5.5 3.5 1.3 4344 chrX 8031404 intergenic not near genes chrX 8033576 intergenic not near genes chrX 8035748 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-57 2417 chrX 8922305 8922340 chrX 8922764 8922799 jockey 12 457 11.0 6.5 8.8 1.2 494 chrX 8922305 intron rdgA + chrX 8922552 intron rdgA + chrX 8922799 intron rdgA + chrX_12_8920001 chrX_8920001 RAL-57 2418 chrX 8922349 8922359 chrX 8922757 8922818 jockey 6 447 9.5 6.0 7.8 0.7 469 chrX 8922349 intron rdgA + chrX 8922584 intron rdgA + chrX 8922818 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-57 2419 chrX 8948742 8948789 chrX 8956277 8956324 roo 5 7535 0.5 2.5 1.5 2.0 7582 chrX 8948742 intron rdgA + chrX 8952533 intron rdgA + chrX 8956324 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-57 2425 chrX 9508115 9508160 chrX 9509658 9509703 jockey 27 1542 9.0 6.5 7.8 3.1 1588 chrX 9508115 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509703 intron CG32700 - chrX_27_9505001 chrX_9505001 RAL-57 2427 chrX 9575793 9575824 chrX 9576116 9576170 mdg3 13 338 7.5 7.5 7.5 1.5 377 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575982 intron,intron CG32699 -,CG42395 - chrX 9576170 intron,5` UTR CG32699 -,CG42395 - chrX_13_9575001 chrX_9575001 RAL-57 2430 chrX 10138196 10138213 chrX 10145725 10145733 412 5 7527 1.5 4.5 3.0 1.2 7537 chrX 10138196 intron,intron RhoU +,CR44894 - chrX 10141964 intron,intron RhoU +,CR44894 - chrX 10145733 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 RAL-57 2434 chrX 10267301 10267321 chrX 10276476 10276496 roo 4 9174 1.0 1.0 1.0 2.0 9195 chrX 10267301 3` UTR alpha-Man-I - chrX 10271898 intron alpha-Man-I - chrX 10276496 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-57 2438 chrX 10348779 10348796 chrX 10356368 10356385 springer 6 7589 6.5 7.5 7.0 0.8 7606 chrX 10348779 intergenic snoRNA:U3:9B + chrX 10352582 intergenic not near genes chrX 10356385 intergenic l(1)G0289 - chrX_6_10350001 chrX_10350001 RAL-57 2441 chrX 10550837 10550883 chrX 10552329 10552364 hobo 11 1488 2.5 1.5 2.0 3.7 1527 chrX 10550837 intron spri - chrX 10551600 intron spri - chrX 10552364 intron spri - chrX_11_10550001 chrX_10550001 RAL-57 2445 chrX 10686035 10686082 chrX 10691197 10691244 roo 9 5162 2.5 1.5 2.0 3.0 5209 chrX 10686035 intron X11Lbeta + chrX 10688640 intron X11Lbeta + chrX 10691244 intron X11Lbeta + chrX_9_10685001 chrX_10685001 RAL-57 2446 chrX 10772654 10772695 chrX 10772762 10772790 Tirant 23 102 11.5 6.0 8.8 2.3 136 chrX 10772654 intron CG15211 + chrX 10772722 intron CG15211 + chrX 10772790 intron CG15211 + chrX_23_10770001 chrX_10770001 RAL-57 2450 chrX 11095977 11096014 chrX 11103104 11103141 HMS-Beagle 17 7127 6.0 12.0 9.0 1.7 7164 chrX 11095977 intergenic not near genes chrX 11099559 intergenic not near genes chrX 11103141 intron CG42249 + chrX_17_11095001 chrX_11095001 RAL-57 2455 chrX 11312077 11312091 chrX 11319413 11319433 Stalker2 5 7351 3.5 3.5 3.5 1.1 7356 chrX 11312077 intergenic not near genes chrX 11315755 intergenic not near genes chrX 11319433 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-57 2458 chrX 11633404 11633440 chrX 11640474 11640519 297 8 7078 4.0 0.5 2.2 2.5 7115 chrX 11633404 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640519 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-57 2464 chrX 12168121 12168154 chrX 12173580 12173621 I-element 4 5464 4.0 2.0 3.0 1.0 5500 chrX 12168121 intron Ten-a + chrX 12170871 intron Ten-a + chrX 12173621 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-57 2483 chrX 13401465 13401514 chrX 13401842 13401891 jockey 13 377 3.5 3.5 3.5 2.9 426 chrX 13401465 intergenic CG1673 +,CG12725 - chrX 13401678 intergenic CG12725 -,CG1673 + chrX 13401891 3` UTR CG12725 - chrX_13_13400001 chrX_13400001 RAL-57 2484 chrX 13429469 13429489 chrX 13430643 13430663 jockey 9 1172 0.5 8.5 4.5 1.6 1194 chrX 13429469 intergenic not near genes chrX 13430066 intergenic not near genes chrX 13430663 intergenic not near genes chrX_9_13430001 chrX_13430001 RAL-57 2485 chrX 13463639 13463669 chrX 13469241 13469271 mdg3 9 5602 3.5 2.0 2.8 2.4 5632 chrX 13463639 intron Neto + chrX 13466455 intron Neto + chrX 13469271 intron Neto + chrX_9_13465001 chrX_13465001 RAL-57 2490 chrX 13937966 13938001 chrX 13941262 13941292 I-element 13 3293 3.0 4.5 3.8 2.7 3326 chrX 13937966 intron mamo - chrX 13939629 intron mamo - chrX 13941292 intron mamo - chrX_13_13935001 chrX_13935001 RAL-57 2493 chrX 14105013 14105018 chrX 14114186 14114189 roo 4 9174 7.5 4.5 6.0 0.6 9176 chrX 14105013 intergenic not near genes chrX 14109601 intergenic not near genes chrX 14114189 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-57 2494 chrX 14105021 14105050 chrX 14114171 14114215 roo 4 9164 3.0 3.5 3.2 1.0 9194 chrX 14105021 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114215 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-57 2501 chrX 14416290 14416335 chrX 14421082 14421127 F-element 7 4792 2.0 1.5 1.8 2.5 4837 chrX 14416290 intron dpr8 + chrX 14418708 intron dpr8 + chrX 14421127 intron dpr8 + chrX_7_14415001 chrX_14415001 RAL-57 2502 chrX 14589691 14589704 chrX 14589953 14589966 pogo 10 261 7.0 11.0 9.0 1.0 275 chrX 14589691 intron CG9413 - chrX 14589828 intron CG9413 - chrX 14589966 intron CG9413 - chrX_10_14585001 chrX_14585001 RAL-57 2505 chrX 14778017 14778045 chrX 14782839 14782867 Doc 6 4822 0.5 4.5 2.5 1.7 4850 chrX 14778017 intergenic CG5347 + chrX 14780442 intergenic not near genes chrX 14782867 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-57 2506 chrX 14818742 14818795 chrX 14823971 14824024 copia 7 5225 2.5 3.5 3.0 1.8 5282 chrX 14818742 intron rut - chrX 14821383 intron rut - chrX 14824024 intron rut - chrX_7_14820001 chrX_14820001 RAL-57 2511 chrX 14936840 14936890 chrX 14946122 14946172 roo 19 9282 5.5 5.0 5.2 3.1 9332 chrX 14936840 intron pdgy - chrX 14941506 intron pdgy - chrX 14946172 intron pdgy - chrX_19_14940001 chrX_14940001 RAL-57 2517 chrX 15273686 15273739 chrX 15274875 15274925 1360 21 1181 6.0 5.5 5.8 3.1 1239 chrX 15273686 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274925 intergenic not near genes chrX_21_15270001 chrX_15270001 RAL-57 2520 chrX 15413032 15413084 chrX 15417359 15417383 Juan 19 4319 9.5 1.5 5.5 2.9 4351 chrX 15413032 intron Cngl - chrX 15415208 intron Cngl - chrX 15417383 intron Cngl - chrX_19_15415001 chrX_15415001 RAL-57 2521 chrX 15435691 15435703 chrX 15436138 15436161 rover 6 456 0.0 7.5 3.8 1.2 470 chrX 15435691 intron Cngl - chrX 15435926 intron Cngl - chrX 15436161 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-57 2532 chrX 16222766 16222803 chrX 16231141 16231178 roo 6 8375 1.5 1.5 1.5 2.4 8412 chrX 16222766 intergenic not near genes chrX 16226972 intergenic not near genes chrX 16231178 intergenic not near genes chrX_6_16225001 chrX_16225001 RAL-57 2534 chrX 16340644 16340697 chrX 16349824 16349879 roo 11 9180 0.5 4.5 2.5 3.1 9235 chrX 16340644 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349879 intergenic sl + chrX_11_16345001 chrX_16345001 RAL-57 2535 chrX 16492620 16492677 chrX 16498222 16498278 mdg3 8 5602 1.0 0.0 0.5 5.3 5658 chrX 16492620 intron para - chrX 16495449 intron para - chrX 16498278 exon para - chrX_8_16495001 chrX_16495001 RAL-57 2542 chrX 16935986 16936033 chrX 16936429 16936471 jockey 20 442 3.5 12.0 7.8 2.3 485 chrX 16935986 intron CG4928 + chrX 16936228 intron CG4928 + chrX 16936471 intron CG4928 + chrX_20_16935001 chrX_16935001 RAL-57 2554 chrX 17195179 17195230 chrX 17200290 17200295 flea 17 5108 9.0 5.5 7.2 2.1 5116 chrX 17195179 3` UTR baz + chrX 17197737 3` UTR baz + chrX 17200295 3` UTR baz + chrX_17_17195001 chrX_17195001 RAL-57 2579 chrX 18194045 18194100 chrX 18194605 18194660 BS 10 558 2.0 3.0 2.5 2.9 615 chrX 18194045 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194660 intron Frq2 + chrX_10_18190001 chrX_18190001 RAL-57 2586 chrX 18429474 18429519 chrX 18434810 18434855 Transpac 19 5336 10.0 8.0 9.0 1.9 5381 chrX 18429474 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434855 intergenic not near genes chrX_19_18430001 chrX_18430001 RAL-57 2596 chrX 18754311 18754339 chrX 18758003 18758031 297 5 3692 3.0 4.0 3.5 1.1 3720 chrX 18754311 intergenic not near genes chrX 18756171 intergenic not near genes chrX 18758031 intergenic not near genes chrX_5_18755001 chrX_18755001 RAL-57 2602 chrX 19060384 19060432 chrX 19065193 19065241 Doc 16 4809 5.0 7.5 6.2 2.2 4857 chrX 19060384 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065241 intron CG14190 + chrX_16_19060001 chrX_19060001 RAL-57 2611 chrX 19136529 19136584 chrX 19143474 19143527 412 25 6944 5.5 2.0 3.8 5.2 6998 chrX 19136529 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143527 3` UTR RhoGAP18B - chrX_25_19140001 chrX_19140001 RAL-57 2613 chrX 19356977 19357018 chrX 19358443 19358502 NOF 4 1470 4.0 0.5 2.2 1.2 1525 chrX 19356977 intron kek5 + chrX 19357740 intron kek5 + chrX 19358502 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-57 2614 chrX 19380140 19380176 chrX 19380406 19380442 pogo 5 266 4.0 2.5 3.2 1.2 302 chrX 19380140 intron kek5 + chrX 19380291 intron kek5 + chrX 19380442 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-57 2618 chrX 19472107 19472123 chrX 19472702 19472718 jockey 7 593 10.0 5.5 7.8 0.8 611 chrX 19472107 intergenic kek5 + chrX 19472412 intergenic kek5 + chrX 19472718 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-57 2619 chrX 19472130 19472157 chrX 19472701 19472751 jockey 9 585 5.0 5.5 5.2 1.5 621 chrX 19472130 intergenic kek5 + chrX 19472440 intergenic not near genes chrX 19472751 intergenic not near genes chrX_9_19470001 chrX_19470001 RAL-57 2622 chrX 19710048 19710104 chrX 19711859 19711909 S-element 45 1808 9.5 9.0 9.2 4.4 1861 chrX 19710048 intron meso18E - chrX 19710978 intron meso18E - chrX 19711909 intron meso18E - chrX_45_19710001 chrX_19710001 RAL-57 2625 chrX 19797328 19797338 chrX 19804670 19804680 Stalker4 4 7342 9.0 5.0 7.0 0.5 7352 chrX 19797328 intergenic not near genes chrX 19801004 intergenic not near genes chrX 19804680 intergenic not near genes chrX_4_19800001 chrX_19800001 RAL-57 2641 chrX 20377325 20377333 chrX 20378817 20378825 hobo 8 1492 11.5 13.5 12.5 0.6 1500 chrX 20377325 intergenic not near genes chrX 20378075 intergenic not near genes chrX 20378825 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-57 2642 chrX 20377340 20377344 chrX 20378803 20378836 hobo 4 1480 11.0 11.0 11.0 0.3 1496 chrX 20377340 intergenic not near genes chrX 20378088 intergenic not near genes chrX 20378836 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-57 2648 chrX 20504112 20504154 chrX 20505645 20505676 transib2 13 1540 5.0 5.0 5.0 2.2 1564 chrX 20504112 intron RhoGAP19D - chrX 20504894 intron RhoGAP19D - chrX 20505676 intron RhoGAP19D - chrX_13_20500001 chrX_20500001 RAL-57 2659 chrX 20940700 20940744 chrX 20942194 20942219 hobo 13 1490 3.5 2.0 2.8 3.4 1519 chrX 20940700 intergenic not near genes chrX 20941460 intergenic not near genes chrX 20942219 intergenic not near genes chrX_13_20940001 chrX_20940001 RAL-57 2669 chrX 21086111 21086157 chrX 21087165 21087211 jockey 7 1054 3.0 3.5 3.2 1.7 1100 chrX 21086111 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087211 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-57 2680 chrX 21458668 21458731 chrX 21464127 21464192 Ivk 19 5460 3.5 2.5 3.0 4.8 5524 chrX 21458668 intergenic not near genes chrX 21461430 intergenic not near genes chrX 21464192 intergenic not near genes chrX_19_21460001 chrX_21460001 RAL-57 2688 chrX 22681458 22681470 chrX 22688939 22688950 HMS-Beagle2 4 7480 3.5 2.0 2.8 1.1 7492 chrX 22681458 intron CR44997 + chrX 22685204 intron CR44997 + chrX 22688950 intron CR44997 + chrX_4_22685001 chrX_22685001 RAL-57 2689 chrX 22697482 22697518 chrX 22701804 22701840 Juan 8 4322 3.5 3.5 3.5 1.8 4358 chrX 22697482 intron CR44997 + chrX 22699661 intron CR44997 + chrX 22701840 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-57 2691 chrX 22811972 22812003 chrX 22816769 22816800 F-element 13 4797 11.5 11.0 11.2 1.1 4828 chrX 22811972 intergenic CG12446 - chrX 22814386 intergenic not near genes chrX 22816800 intergenic not near genes chrX_13_22810001 chrX_22810001 RAL-57 2694 chrX 22987085 22987132 chrX 22989769 22989816 Burdock 14 2682 3.5 6.0 4.8 2.4 2731 chrX 22987085 intron,intron stnA -,stnB - chrX 22988450 intron,intron stnA -,stnB - chrX 22989816 intron,intron stnA -,stnB - chrX_14_22985001 chrX_22985001 RAL-57 2695 chrX 22996289 22996337 chrX 23003548 23003595 roo 14 7258 5.0 3.0 4.0 2.8 7306 chrX 22996289 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003595 intron,intron stnA -,stnB - chrX_14_22995001 chrX_22995001 RAL-57