SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47472	47481	chr2L	52577	52586	jockey	4	5104	5.0	6.5	5.8	0.6	5114	chr2L	47472	intron	Cda5 -	chr2L	50029	intron	Cda5 -	chr2L	52586	intron	Cda5 -	chr2L_4_50001	chr2L_50001	RAL-563
7	chr2L	686922	686941	chr2L	695962	695981	roo	7	9040	3.0	3.0	3.0	1.8	9059	chr2L	686922	intron	ds -	chr2L	691452	intron	ds -	chr2L	695981	intron	ds -	chr2L_7_690001	chr2L_690001	RAL-563
11	chr2L	770473	770483	chr2L	772253	772264	Bari1	5	1780	4.0	4.5	4.2	1.0	1791	chr2L	770473	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772264	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-563
16	chr2L	976878	976910	chr2L	984514	984546	roo	4	7636	1.5	0.0	0.8	2.2	7668	chr2L	976878	intergenic	not near genes	chr2L	980712	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-563
19	chr2L	1220133	1220160	chr2L	1227599	1227626	blood	6	7464	1.0	0.5	0.8	3.3	7493	chr2L	1220133	intron	CG42329 +	chr2L	1223880	intron	CG42329 +	chr2L	1227626	intron	CG42329 +	chr2L_6_1220001	chr2L_1220001	RAL-563
25	chr2L	1570706	1570717	chr2L	1573578	1573589	F-element	6	2872	3.0	2.5	2.8	1.6	2883	chr2L	1570706	intron	haf +	chr2L	1572148	intron	haf +	chr2L	1573589	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-563
27	chr2L	1711354	1711389	chr2L	1711678	1711707	mdg3	15	320	4.0	6.5	5.2	2.4	353	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711530	3` UTR	frtz -	chr2L	1711707	3` UTR	frtz -	chr2L_15_1710001	chr2L_1710001	RAL-563
36	chr2L	2100380	2100405	chr2L	2109531	2109549	roo	13	9150	2.0	4.0	3.0	3.2	9169	chr2L	2100380	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109549	intron	dpr3 -	chr2L_13_2100001	chr2L_2100001	RAL-563
50	chr2L	3251501	3251523	chr2L	3259066	3259087	springer	4	7565	1.5	4.0	2.8	1.1	7586	chr2L	3251501	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259087	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-563
57	chr2L	4066042	4066062	chr2L	4068863	4068887	Juan	4	2824	0.5	2.5	1.5	1.6	2845	chr2L	4066042	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068887	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-563
66	chr2L	4601703	4601723	chr2L	4609144	4609164	mdg1	9	7441	2.0	1.0	1.5	3.6	7461	chr2L	4601703	intron	dp -	chr2L	4605434	intron	dp -	chr2L	4609164	intron	dp -	chr2L_9_4605001	chr2L_4605001	RAL-563
69	chr2L	4953519	4953544	chr2L	4953760	4953785	pogo	8	240	3.0	0.5	1.8	2.9	266	chr2L	4953519	intergenic	Jon25Bii -	chr2L	4953652	intergenic	not near genes	chr2L	4953785	intergenic	Jon25Bi -	chr2L_8_4950001	chr2L_4950001	RAL-563
83	chr2L	6363148	6363183	chr2L	6366070	6366105	Burdock	18	2921	1.5	1.5	1.5	7.2	2957	chr2L	6363148	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366105	intergenic	not near genes	chr2L_18_6360001	chr2L_6360001	RAL-563
84	chr2L	6426866	6426882	chr2L	6445126	6445142	roo	6	18260	4.0	6.5	5.2	1.0	18276	chr2L	6426866	3` UTR	CG9527 -	chr2L	6436004	intron	CG9527 -	chr2L	6445142	exon	CG9527 -	chr2L_6_6435001	chr2L_6435001	RAL-563
98	chr2L	7343323	7343359	chr2L	7350439	7350474	roo	14	7116	4.0	3.0	3.5	3.1	7151	chr2L	7343323	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_14_7345001	chr2L_7345001	RAL-563
103	chr2L	7959041	7959068	chr2L	7960452	7960479	pogo	10	1411	0.0	2.0	1.0	5.0	1438	chr2L	7959041	intron	Snoo -	chr2L	7959760	intron	Snoo -	chr2L	7960479	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	RAL-563
104	chr2L	7977089	7977110	chr2L	7984064	7984084	297	9	6974	1.0	2.5	1.8	3.2	6995	chr2L	7977089	intron	Snoo -	chr2L	7980586	intron	Snoo -	chr2L	7984084	intron,5` UTR	Snoo -,CG7231 +	chr2L_9_7980001	chr2L_7980001	RAL-563
110	chr2L	8723115	8723141	chr2L	8731492	8731518	Tirant	4	8377	1.0	2.5	1.8	1.4	8403	chr2L	8723115	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731518	intron	raw -	chr2L_4_8725001	chr2L_8725001	RAL-563
111	chr2L	9000287	9000294	chr2L	9007797	9007804	roo	4	7510	5.0	1.0	3.0	1.0	7517	chr2L	9000287	intergenic	Try29F +	chr2L	9004046	intergenic	not near genes	chr2L	9007804	intergenic	not near genes	chr2L_4_9000001	chr2L_9000001	RAL-563
127	chr2L	9973741	9973758	chr2L	9980851	9980877	HMS-Beagle	11	7117	1.0	8.0	4.5	2.0	7136	chr2L	9973741	intergenic	not near genes	chr2L	9977309	intergenic	not near genes	chr2L	9980877	intergenic	not near genes	chr2L_11_9975001	chr2L_9975001	RAL-563
132	chr2L	10156334	10156355	chr2L	10163802	10163824	blood	5	7468	2.0	4.0	3.0	1.2	7490	chr2L	10156334	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160079	intron	CG44153 -	chr2L	10163824	intron	CG44153 -	chr2L_5_10160001	chr2L_10160001	RAL-563
137	chr2L	10862845	10862867	chr2L	10864459	10864481	Rt1c	7	1614	3.0	5.5	4.2	1.3	1636	chr2L	10862845	3` UTR	CR43807 -	chr2L	10863663	intron	CR43807 -	chr2L	10864481	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	RAL-563
138	chr2L	10946955	10946977	chr2L	10956170	10956192	roo	9	9214	0.5	6.0	3.2	2.1	9237	chr2L	10946955	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_9_10950001	chr2L_10950001	RAL-563
142	chr2L	11563646	11563666	chr2L	11568850	11568870	copia	7	5204	2.5	2.0	2.2	2.2	5224	chr2L	11563646	intergenic	not near genes	chr2L	11566258	intergenic	not near genes	chr2L	11568870	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-563
144	chr2L	11713513	11713537	chr2L	11720980	11721005	blood	6	7468	1.5	2.0	1.8	2.1	7492	chr2L	11713513	intergenic	not near genes	chr2L	11717259	intergenic	not near genes	chr2L	11721005	intergenic	CR44143 +	chr2L_6_11715001	chr2L_11715001	RAL-563
148	chr2L	12067328	12067359	chr2L	12074380	12074411	297	4	7052	2.0	0.0	1.0	2.0	7083	chr2L	12067328	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074411	intergenic	not near genes	chr2L_4_12070001	chr2L_12070001	RAL-563
152	chr2L	12558328	12558353	chr2L	12565457	12565482	HMS-Beagle	4	7129	1.0	2.5	1.8	1.4	7154	chr2L	12558328	intergenic	not near genes	chr2L	12561905	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_4_12560001	chr2L_12560001	RAL-563
155	chr2L	12728935	12728946	chr2L	12729175	12729187	pogo	4	240	1.5	6.0	3.8	0.8	252	chr2L	12728935	intron	MRP +	chr2L	12729061	intron	MRP +	chr2L	12729187	exon	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-563
158	chr2L	12861694	12861727	chr2L	12863161	12863179	hobo	14	1465	1.0	4.5	2.8	3.7	1485	chr2L	12861694	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863179	intergenic	not near genes	chr2L_14_12860001	chr2L_12860001	RAL-563
165	chr2L	13405646	13405673	chr2L	13410443	13410470	Doc	7	4797	4.0	2.5	3.2	1.7	4824	chr2L	13405646	exon	CG7110 +	chr2L	13408058	intron	CG7110 +	chr2L	13410470	intron	CG7110 +	chr2L_7_13405001	chr2L_13405001	RAL-563
166	chr2L	13481449	13481472	chr2L	13482056	13482079	jockey	5	607	1.5	7.0	4.2	1.0	630	chr2L	13481449	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482079	intron	CG42784 +	chr2L_5_13480001	chr2L_13480001	RAL-563
170	chr2L	13853086	13853113	chr2L	13862234	13862263	roo	5	9149	5.5	1.0	3.2	1.2	9177	chr2L	13853086	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862263	intron	CenG1A +	chr2L_5_13855001	chr2L_13855001	RAL-563
176	chr2L	14803887	14803910	chr2L	14809089	14809113	copia	6	5203	2.0	6.0	4.0	1.2	5226	chr2L	14803887	intergenic	not near genes	chr2L	14806500	intergenic	not near genes	chr2L	14809113	intergenic	not near genes	chr2L_6_14805001	chr2L_14805001	RAL-563
177	chr2L	14889960	14889972	chr2L	14890385	14890397	jockey	4	425	1.0	5.5	3.2	1.0	437	chr2L	14889960	intergenic	not near genes	chr2L	14890178	intergenic	not near genes	chr2L	14890397	intergenic	not near genes	chr2L_4_14890001	chr2L_14890001	RAL-563
185	chr2L	15956033	15956058	chr2L	15957500	15957525	hobo	5	1467	1.5	0.0	0.8	2.8	1492	chr2L	15956033	intron	beat-Ib -	chr2L	15956779	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_5_15955001	chr2L_15955001	RAL-563
188	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	10.5	12.0	11.2	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-563
189	chr2L	16141167	16141196	chr2L	16146373	16146403	copia	8	5207	1.5	2.0	1.8	2.9	5236	chr2L	16141167	intergenic	not near genes	chr2L	16143785	intergenic	not near genes	chr2L	16146403	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-563
191	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	10.5	12.0	11.2	0.8	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-563
192	chr2L	16280252	16280284	chr2L	16281423	16281454	1360	10	1169	4.0	5.0	4.5	1.8	1202	chr2L	16280252	intron	crp -	chr2L	16280853	intron	crp -	chr2L	16281454	intron	crp -	chr2L_10_16280001	chr2L_16280001	RAL-563
197	chr2L	17273192	17273199	chr2L	17277975	17277981	F-element	10	4782	8.0	3.0	5.5	1.5	4789	chr2L	17273192	intergenic	not near genes	chr2L	17275586	intergenic	not near genes	chr2L	17277981	intergenic	not near genes	chr2L_10_17275001	chr2L_17275001	RAL-563
198	chr2L	17273201	17273229	chr2L	17277971	17277979	F-element	4	4770	3.0	2.5	2.8	1.1	4778	chr2L	17273201	intergenic	not near genes	chr2L	17275590	intergenic	not near genes	chr2L	17277979	intergenic	not near genes	chr2L_4_17275001	chr2L_17275001	RAL-563
204	chr2L	17819932	17819951	chr2L	17825134	17825153	copia	4	5202	0.5	3.5	2.0	1.3	5221	chr2L	17819932	intron	CadN2 -	chr2L	17822542	intron	CadN2 -	chr2L	17825153	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-563
206	chr2L	17951951	17951968	chr2L	17953417	17953434	hobo	4	1466	1.5	1.0	1.2	1.8	1483	chr2L	17951951	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953434	intergenic	not near genes	chr2L_4_17950001	chr2L_17950001	RAL-563
217	chr2L	19345012	19345046	chr2L	19357221	19357254	blood	9	12207	2.5	1.5	2.0	3.0	12242	chr2L	19345012	intron	dnt -	chr2L	19351133	intron	dnt -	chr2L	19357254	intron	dnt -	chr2L_9_19350001	chr2L_19350001	RAL-563
224	chr2L	19620094	19620130	chr2L	19621080	19621107	jockey	7	978	1.0	7.5	4.2	1.3	1013	chr2L	19620094	intron	Lar +	chr2L	19620600	intron	Lar +	chr2L	19621107	intron	Lar +	chr2L_7_19620001	chr2L_19620001	RAL-563
226	chr2L	19703536	19703557	chr2L	19712672	19712693	roo	5	9133	5.0	3.5	4.2	1.0	9157	chr2L	19703536	intron	Lar +	chr2L	19708114	intron	Lar +	chr2L	19712693	intron	Lar +	chr2L_5_19705001	chr2L_19705001	RAL-563
236	chr2L	20303186	20303188	chr2L	20310651	20310656	blood	4	7467	0.5	1.0	0.8	2.2	7470	chr2L	20303186	intergenic	not near genes	chr2L	20306921	intergenic	not near genes	chr2L	20310656	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-563
238	chr2L	20576217	20576251	chr2L	20583685	20583719	blood	6	7468	1.5	0.0	0.8	3.3	7502	chr2L	20576217	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_6_20575001	chr2L_20575001	RAL-563
241	chr2L	20901480	20901488	chr2L	20902622	20902644	1360	5	1153	1.0	0.5	0.8	2.8	1164	chr2L	20901480	intron,intron	CG43739 -,sky -	chr2L	20902062	intron,intron	CG43739 -,sky -	chr2L	20902644	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-563
243	chr2L	21020274	21020310	chr2L	21023951	21023987	NOF	7	3676	0.5	2.0	1.2	3.2	3713	chr2L	21020274	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023987	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	RAL-563
244	chr2L	21041137	21041168	chr2L	21049398	21049429	Tirant	7	8259	2.5	2.0	2.2	2.2	8292	chr2L	21041137	intron	CG42238 -	chr2L	21045283	intron	CG42238 -	chr2L	21049429	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	RAL-563
253	chr2L	21981685	21981708	chr2L	21990850	21990873	roo	9	9165	2.0	5.5	3.8	1.9	9188	chr2L	21981685	exon	CG2528 -	chr2L	21986279	intron	CG2528 -	chr2L	21990873	exon	CG2528 -	chr2L_9_21985001	chr2L_21985001	RAL-563
256	chr2L	22258618	22258642	chr2L	22260742	22260766	G6	6	2124	3.5	1.5	2.5	1.7	2148	chr2L	22258618	intergenic	Tif-IA +	chr2L	22259692	intergenic	not near genes	chr2L	22260766	intergenic	not near genes	chr2L_6_22255001	chr2L_22255001	RAL-563
258	chr2R	529323	529356	chr2R	537948	537975	Max-element	7	8621	0.5	1.5	1.0	3.5	8652	chr2R	529323	intron	CG40378 +	chr2R	533649	intron	CG40378 +	chr2R	537975	intron	CG40378 +	chr2R_7_530001	chr2R_530001	RAL-563
259	chr2R	552752	552779	chr2R	553970	553975	1360	4	1203	6.0	6.0	6.0	0.6	1223	chr2R	552752	intron	CG40378 +	chr2R	553364	intron	CG40378 +	chr2R	553975	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-563
263	chr2R	4622951	4622985	chr2R	4624109	4624144	1360	6	1157	10.5	10.5	10.5	0.5	1193	chr2R	4622951	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624144	intergenic	not near genes	chr2R_6_4620001	chr2R_4620001	RAL-563
264	chr2R	4750340	4750371	chr2R	4751497	4751528	1360	5	1153	5.5	3.5	4.5	0.9	1188	chr2R	4750340	intron	conu +	chr2R	4750934	intron	conu +	chr2R	4751528	intron	conu +	chr2R_5_4750001	chr2R_4750001	RAL-563
277	chr2R	5869281	5869307	chr2R	5874357	5874383	flea	5	5076	1.5	3.0	2.2	1.6	5102	chr2R	5869281	intergenic	not near genes	chr2R	5871832	intergenic	not near genes	chr2R	5874383	intergenic	not near genes	chr2R_5_5870001	chr2R_5870001	RAL-563
283	chr2R	6096728	6096749	chr2R	6101913	6101940	BS	7	5193	3.5	3.0	3.2	1.7	5212	chr2R	6096728	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101940	intron	EcR -	chr2R_7_6095001	chr2R_6095001	RAL-563
284	chr2R	6494529	6494549	chr2R	6499290	6499311	F-element	5	4762	4.0	0.5	2.2	1.6	4782	chr2R	6494529	intergenic	not near genes	chr2R	6496920	intergenic	not near genes	chr2R	6499311	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	RAL-563
292	chr2R	7235820	7235848	chr2R	7240912	7240940	jockey	12	5091	5.5	2.0	3.8	2.5	5120	chr2R	7235820	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240940	intergenic	not near genes	chr2R_12_7235001	chr2R_7235001	RAL-563
295	chr2R	7815674	7815687	chr2R	7822143	7822156	Burdock	10	6467	2.0	2.0	2.0	3.3	6482	chr2R	7815674	intergenic	CG1882 +	chr2R	7818915	intergenic	not near genes	chr2R	7822156	3` UTR	cathD -	chr2R_10_7815001	chr2R_7815001	RAL-563
296	chr2R	7869189	7869221	chr2R	7873975	7873983	Doc	8	4783	2.5	3.0	2.8	2.1	4794	chr2R	7869189	intron	Dgk -	chr2R	7871586	intron	Dgk -	chr2R	7873983	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	RAL-563
307	chr2R	8398212	8398241	chr2R	8402991	8403021	Doc	8	4780	1.0	2.0	1.5	3.2	4809	chr2R	8398212	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403021	intron	CG2121 -	chr2R_8_8400001	chr2R_8400001	RAL-563
313	chr2R	8722773	8722791	chr2R	8723003	8723032	pogo	5	237	3.0	4.5	3.8	1.0	259	chr2R	8722773	intron	CG14767 -	chr2R	8722902	intron	CG14767 -	chr2R	8723032	intron	CG14767 -	chr2R_5_8720001	chr2R_8720001	RAL-563
317	chr2R	9151316	9151328	chr2R	9157786	9157796	Burdock	4	6469	2.5	2.5	2.5	1.1	6480	chr2R	9151316	3` UTR	CG30345 +	chr2R	9154556	intergenic	not near genes	chr2R	9157796	intergenic	CG8008 -	chr2R_4_9150001	chr2R_9150001	RAL-563
319	chr2R	9212701	9212722	chr2R	9213187	9213208	roo	12	483	3.5	4.5	4.0	2.4	507	chr2R	9212701	intergenic	CR45309 +	chr2R	9212954	intergenic	CR45309 +	chr2R	9213208	5` UTR	CR45309 +	chr2R_12_9210001	chr2R_9210001	RAL-563
329	chr2R	9871047	9871069	chr2R	9871532	9871555	roo	6	485	3.0	3.5	3.2	1.4	508	chr2R	9871047	intron	cbx -	chr2R	9871301	intron	cbx -	chr2R	9871555	intron,5` UTR	cbx -,CG18446 +	chr2R_6_9870001	chr2R_9870001	RAL-563
331	chr2R	9945439	9945466	chr2R	9945634	9945662	BS	7	196	3.0	2.0	2.5	2.0	223	chr2R	9945439	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945662	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-563
334	chr2R	10005865	10005877	chr2R	10007030	10007039	1360	4	1164	4.5	5.0	4.8	0.7	1174	chr2R	10005865	intron	Pka-R2 -	chr2R	10006452	intron	Pka-R2 -	chr2R	10007039	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-563
343	chr2R	10585575	10585589	chr2R	10594158	10594172	Tirant	5	8582	1.5	3.5	2.5	1.4	8597	chr2R	10585575	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594172	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-563
346	chr2R	10948031	10948057	chr2R	10955578	10955603	17.6	7	7545	1.5	2.5	2.0	2.3	7572	chr2R	10948031	intergenic	not near genes	chr2R	10951817	intergenic	not near genes	chr2R	10955603	intergenic	not near genes	chr2R_7_10950001	chr2R_10950001	RAL-563
348	chr2R	11009823	11009843	chr2R	11018997	11019006	roo	6	9172	1.5	2.5	2.0	2.0	9183	chr2R	11009823	intron	luna -	chr2R	11014414	intron	luna -	chr2R	11019006	intron	luna -	chr2R_6_11010001	chr2R_11010001	RAL-563
349	chr2R	11019899	11019911	chr2R	11024947	11024964	jockey	5	5056	1.0	5.5	3.2	1.2	5065	chr2R	11019899	intron	luna -	chr2R	11022432	intron	luna -	chr2R	11024964	intron	luna -	chr2R_5_11020001	chr2R_11020001	RAL-563
353	chr2R	11207815	11207829	chr2R	11208007	11208020	BS	7	192	11.5	2.0	6.8	0.9	205	chr2R	11207815	intron	shn +	chr2R	11207918	intron	shn +	chr2R	11208020	intron	shn +	chr2R_7_11205001	chr2R_11205001	RAL-563
355	chr2R	11415529	11415549	chr2R	11418678	11418698	opus	4	3149	1.5	7.5	4.5	0.7	3169	chr2R	11415529	intron	Drip -	chr2R	11417114	intron	Drip -	chr2R	11418698	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-563
365	chr2R	12481148	12481169	chr2R	12482938	12482950	roo	7	1791	2.0	3.5	2.8	1.8	1802	chr2R	12481148	exon	Dh44-R2 +	chr2R	12482049	intron	Dh44-R2 +	chr2R	12482950	intron	Dh44-R2 +	chr2R_7_12480001	chr2R_12480001	RAL-563
366	chr2R	12501701	12501717	chr2R	12503863	12503864	Rt1c	9	2160	0.5	11.0	5.8	1.3	2163	chr2R	12501701	intron	fdl -	chr2R	12502782	intron	fdl -	chr2R	12503864	intron	fdl -	chr2R_9_12500001	chr2R_12500001	RAL-563
367	chr2R	12501718	12501724	chr2R	12503851	12503886	Rt1c	8	2153	0.5	9.5	5.0	1.3	2168	chr2R	12501718	intron	fdl -	chr2R	12502802	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_8_12500001	chr2R_12500001	RAL-563
370	chr2R	12789297	12789327	chr2R	12797660	12797690	roo	5	8360	2.0	2.5	2.2	1.6	8393	chr2R	12789297	intron,3` UTR	sca +,CR45137 -	chr2R	12793494	intron,intron	sca +,CR45137 -	chr2R	12797690	intron,3` UTR	sca +,CR45137 -	chr2R_5_12790001	chr2R_12790001	RAL-563
372	chr2R	12819453	12819478	chr2R	12824522	12824549	jockey	4	5069	1.5	1.5	1.5	1.6	5096	chr2R	12819453	intergenic	not near genes	chr2R	12822001	intergenic	not near genes	chr2R	12824549	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-563
374	chr2R	13136843	13136866	chr2R	13141641	13141664	Doc	6	4798	3.0	5.5	4.2	1.2	4821	chr2R	13136843	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141664	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-563
377	chr2R	13580502	13580532	chr2R	13580851	13580879	jockey	7	348	0.5	4.5	2.5	2.0	377	chr2R	13580502	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580879	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_7_13580001	chr2R_13580001	RAL-563
383	chr2R	14467308	14467324	chr2R	14476454	14476482	roo	4	9154	3.0	4.0	3.5	0.9	9174	chr2R	14467308	intergenic	not near genes	chr2R	14471895	intergenic	not near genes	chr2R	14476482	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-563
389	chr2R	15004727	15004753	chr2R	15005056	15005082	jockey	5	329	3.0	1.5	2.2	1.6	355	chr2R	15004727	intergenic	not near genes	chr2R	15004904	intergenic	not near genes	chr2R	15005082	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-563
391	chr2R	15015454	15015484	chr2R	15022878	15022908	mdg1	7	7424	1.5	1.5	1.5	2.8	7454	chr2R	15015454	intron	hbs +	chr2R	15019181	intron	hbs +	chr2R	15022908	intron	hbs +	chr2R_7_15015001	chr2R_15015001	RAL-563
406	chr2R	17147246	17147257	chr2R	17152277	17152288	jockey	6	5031	3.5	0.5	2.0	2.0	5042	chr2R	17147246	intergenic	not near genes	chr2R	17149767	intergenic	not near genes	chr2R	17152288	intergenic	not near genes	chr2R_6_17145001	chr2R_17145001	RAL-563
407	chr2R	17236519	17236541	chr2R	17241723	17241745	copia	7	5204	1.0	3.0	2.0	2.3	5226	chr2R	17236519	intron	mbl +	chr2R	17239132	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_7_17235001	chr2R_17235001	RAL-563
408	chr2R	17277237	17277244	chr2R	17277645	17277652	jockey	4	406	1.0	3.0	2.0	1.3	415	chr2R	17277237	intron	mbl +	chr2R	17277444	intron	mbl +	chr2R	17277652	intron	mbl +	chr2R_4_17275001	chr2R_17275001	RAL-563
421	chr2R	18575811	18575831	chr2R	18581984	18582015	3S18	4	6178	2.0	2.0	2.0	1.3	6204	chr2R	18575811	intron	GEFmeso -	chr2R	18578913	intron	GEFmeso -	chr2R	18582015	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-563
422	chr2R	18590867	18590895	chr2R	18600019	18600047	roo	5	9152	4.0	1.5	2.8	1.3	9180	chr2R	18590867	intron	GEFmeso -	chr2R	18595457	intron	GEFmeso -	chr2R	18600047	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-563
435	chr2R	19776593	19776627	chr2R	19779916	19779950	jockey	7	3323	5.0	3.0	4.0	1.4	3357	chr2R	19776593	intergenic	not near genes	chr2R	19778272	intergenic	not near genes	chr2R	19779950	intergenic	not near genes	chr2R_7_19775001	chr2R_19775001	RAL-563
436	chr2R	19957430	19957462	chr2R	19962632	19962663	copia	6	5201	2.5	2.0	2.2	1.9	5233	chr2R	19957430	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962663	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-563
443	chr2R	20739440	20739478	chr2R	20744208	20744231	F-element	8	4766	0.5	2.0	1.2	3.6	4791	chr2R	20739440	intron	dpr +	chr2R	20741836	intron	dpr +	chr2R	20744231	intron	dpr +	chr2R_8_20740001	chr2R_20740001	RAL-563
454	chr2R	21753086	21753116	chr2R	21753571	21753601	roo	7	485	3.5	4.0	3.8	1.5	515	chr2R	21753086	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-563
455	chr2R	21809528	21809555	chr2R	21817768	21817795	roo	5	8240	0.5	3.5	2.0	1.7	8267	chr2R	21809528	intergenic	not near genes	chr2R	21813662	intergenic	not near genes	chr2R	21817795	intergenic	not near genes	chr2R_5_21810001	chr2R_21810001	RAL-563
465	chr2R	22349695	22349721	chr2R	22351479	22351505	jockey	8	1783	4.5	3.5	4.0	1.6	1810	chr2R	22349695	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351505	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-563
468	chr2R	22525759	22525785	chr2R	22529318	22529343	jockey	8	3559	2.5	1.5	2.0	2.7	3584	chr2R	22525759	intron	px -	chr2R	22527551	intron	px -	chr2R	22529343	intron	px -	chr2R_8_22525001	chr2R_22525001	RAL-563
482	chr2R	23529573	23529606	chr2R	23537149	23537176	412	13	7568	2.5	2.5	2.5	3.7	7603	chr2R	23529573	intron	bw -	chr2R	23533374	intron	bw -	chr2R	23537176	exon	bw -	chr2R_13_23530001	chr2R_23530001	RAL-563
489	chr2R	23914300	23914332	chr2R	23921923	23921956	412	5	7617	1.5	4.5	3.0	1.2	7656	chr2R	23914300	exon	kcc +	chr2R	23918128	intron	kcc +	chr2R	23921956	intron	kcc +	chr2R_5_23915001	chr2R_23915001	RAL-563
496	chr2R	24353426	24353434	chr2R	24361788	24361796	roo	6	8362	3.0	2.5	2.8	1.6	8370	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357611	intron,intron	bs +,CR44811 -	chr2R	24361796	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-563
501	chr2R	24647574	24647616	chr2R	24655144	24655172	412	9	7557	2.0	3.0	2.5	2.6	7598	chr2R	24647574	intergenic	not near genes	chr2R	24651373	intergenic	not near genes	chr2R	24655172	intergenic	not near genes	chr2R_9_24650001	chr2R_24650001	RAL-563
502	chr2R	24727883	24727911	chr2R	24735391	24735419	mdg1	15	7507	4.0	3.5	3.8	3.1	7536	chr2R	24727883	intron	Mid1 -	chr2R	24731651	intron	Mid1 -	chr2R	24735419	intron	Mid1 -	chr2R_15_24730001	chr2R_24730001	RAL-563
504	chr2R	24763610	24763643	chr2R	24765586	24765617	G2	16	1974	1.5	1.0	1.2	7.3	2007	chr2R	24763610	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765617	exon	CG3894 +	chr2R_16_24760001	chr2R_24760001	RAL-563
514	chr3L	858001	858028	chr3L	866482	866508	Tirant	17	8473	4.5	3.5	4.0	3.4	8507	chr3L	858001	intergenic	not near genes	chr3L	862254	intergenic	not near genes	chr3L	866508	5` UTR	CG12502 +	chr3L_17_860001	chr3L_860001	RAL-563
515	chr3L	925182	925209	chr3L	932607	932634	mdg1	8	7425	1.0	2.0	1.5	3.2	7452	chr3L	925182	intron	Glut1 +	chr3L	928908	intron	Glut1 +	chr3L	932634	intron	Glut1 +	chr3L_8_925001	chr3L_925001	RAL-563
517	chr3L	939774	939801	chr3L	940894	940922	jockey	15	1120	3.0	2.5	2.8	3.9	1148	chr3L	939774	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_15_940001	chr3L_940001	RAL-563
520	chr3L	1154131	1154163	chr3L	1163281	1163313	roo	6	9148	1.0	1.5	1.2	2.7	9182	chr3L	1154131	intron	bab2 -	chr3L	1158722	intron	bab2 -	chr3L	1163313	intron	bab2 -	chr3L_6_1155001	chr3L_1155001	RAL-563
521	chr3L	1219596	1219625	chr3L	1227328	1227342	412	13	7731	3.5	3.0	3.2	3.1	7746	chr3L	1219596	intron	mwh +	chr3L	1223469	intron	mwh +	chr3L	1227342	intron	mwh +	chr3L_13_1220001	chr3L_1220001	RAL-563
526	chr3L	1506002	1506030	chr3L	1513594	1513624	17.6	7	7596	3.5	1.5	2.5	2.0	7622	chr3L	1506002	intron,intron	Psa +,cue -	chr3L	1509813	intron,intron	Psa +,cue -	chr3L	1513624	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-563
534	chr3L	2447520	2447535	chr3L	2456662	2456691	roo	5	9152	3.5	6.0	4.8	0.9	9171	chr3L	2447520	intron	CG45186 +	chr3L	2452106	intron	CG45186 +	chr3L	2456691	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-563
535	chr3L	2447536	2447537	chr3L	2456661	2456693	roo	4	9148	3.0	6.0	4.5	0.7	9157	chr3L	2447536	intron	CG45186 +	chr3L	2452114	intron	CG45186 +	chr3L	2456693	intron	CG45186 +	chr3L_4_2450001	chr3L_2450001	RAL-563
541	chr3L	2927839	2927856	chr3L	2936115	2936133	Tirant	6	8276	1.5	0.5	1.0	3.0	8294	chr3L	2927839	intron	Shab +	chr3L	2931986	intron	Shab +	chr3L	2936133	intron	Shab +	chr3L_6_2930001	chr3L_2930001	RAL-563
546	chr3L	3281442	3281471	chr3L	3281937	3281952	Doc	9	490	1.0	3.0	2.0	3.0	510	chr3L	3281442	intron	CG12017 +	chr3L	3281697	intron	CG12017 +	chr3L	3281952	intron	CG12017 +	chr3L_9_3280001	chr3L_3280001	RAL-563
547	chr3L	3475075	3475112	chr3L	3475519	3475556	jockey	22	444	3.0	2.5	2.8	5.8	481	chr3L	3475075	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475556	intron	CG42324 +	chr3L_22_3475001	chr3L_3475001	RAL-563
548	chr3L	3601301	3601328	chr3L	3606612	3606639	copia	6	5310	4.5	5.5	5.0	1.0	5338	chr3L	3601301	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-563
562	chr3L	5926324	5926344	chr3L	5926503	5926534	BS	16	181	3.0	3.5	3.2	3.8	210	chr3L	5926324	intron	Vap-33B +	chr3L	5926429	intron	Vap-33B +	chr3L	5926534	intron	Vap-33B +	chr3L_16_5925001	chr3L_5925001	RAL-563
564	chr3L	6335010	6335024	chr3L	6335481	6335495	297	5	471	2.0	3.0	2.5	1.4	485	chr3L	6335010	intron	CG13300 -	chr3L	6335252	intron	CG13300 -	chr3L	6335495	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RAL-563
565	chr3L	6855934	6855954	chr3L	6860718	6860738	Doc	4	4784	2.0	3.5	2.8	1.1	4804	chr3L	6855934	intergenic	not near genes	chr3L	6858336	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	RAL-563
575	chr3L	7886529	7886540	chr3L	7889044	7889058	Stalker4	6	2517	1.0	1.5	1.2	2.7	2529	chr3L	7886529	intron	CG32365 +	chr3L	7887794	intron	CG32365 +	chr3L	7889058	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-563
576	chr3L	7985363	7985394	chr3L	7987691	7987722	NOF	4	2328	0.5	2.5	1.5	1.6	2359	chr3L	7985363	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987722	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-563
580	chr3L	8498304	8498310	chr3L	8505771	8505777	blood	4	7467	0.0	2.0	1.0	2.0	7473	chr3L	8498304	intron	CG43163 -	chr3L	8502040	intron	CG43163 -	chr3L	8505777	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-563
586	chr3L	9076925	9076957	chr3L	9084485	9084517	412	7	7560	4.0	0.5	2.2	2.2	7592	chr3L	9076925	exon	Tequila +	chr3L	9080721	intron	Tequila +	chr3L	9084517	exon	Tequila +	chr3L_7_9080001	chr3L_9080001	RAL-563
589	chr3L	9130559	9130579	chr3L	9134319	9134340	412	6	3760	4.5	3.0	3.8	1.2	3781	chr3L	9130559	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134340	intergenic	Dhpr +	chr3L_6_9130001	chr3L_9130001	RAL-563
590	chr3L	9443518	9443540	chr3L	9445309	9445331	S-element	6	1791	0.0	0.5	0.2	5.0	1813	chr3L	9443518	intron	CG33926 +	chr3L	9444424	intron	CG33926 +	chr3L	9445331	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	RAL-563
592	chr3L	9575914	9575932	chr3L	9580992	9581009	jockey	10	5077	6.0	4.0	5.0	1.7	5095	chr3L	9575914	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581009	intron	CG42673 +	chr3L_10_9575001	chr3L_9575001	RAL-563
610	chr3L	11087057	11087088	chr3L	11088846	11088877	S-element	13	1789	0.5	2.5	1.5	5.2	1820	chr3L	11087057	intron	JIL-1 -	chr3L	11087967	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_13_11085001	chr3L_11085001	RAL-563
618	chr3L	11723086	11723102	chr3L	11727881	11727897	Doc	4	4794	2.0	1.0	1.5	1.6	4811	chr3L	11723086	3` UTR	Bmcp +	chr3L	11725492	intron	Bmcp +	chr3L	11727897	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-563
620	chr3L	11864556	11864579	chr3L	11865850	11865874	pogo	4	1295	3.0	0.5	1.8	1.4	1318	chr3L	11864556	intron	CG44837 -	chr3L	11865215	intron	CG44837 -	chr3L	11865874	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-563
630	chr3L	12874923	12874959	chr3L	12877215	12877251	jockey	5	2292	1.0	0.0	0.5	3.3	2328	chr3L	12874923	intergenic	not near genes	chr3L	12876087	intergenic	not near genes	chr3L	12877251	intergenic	not near genes	chr3L_5_12875001	chr3L_12875001	RAL-563
632	chr3L	12919297	12919302	chr3L	12924744	12924775	Rt1c	7	5469	6.5	2.5	4.5	1.3	5478	chr3L	12919297	intergenic	not near genes	chr3L	12922036	intergenic	not near genes	chr3L	12924775	intergenic	not near genes	chr3L_7_12920001	chr3L_12920001	RAL-563
634	chr3L	12957796	12957812	chr3L	12962278	12962294	copia	4	4482	1.0	2.0	1.5	1.6	4498	chr3L	12957796	intergenic	not near genes	chr3L	12960045	intergenic	not near genes	chr3L	12962294	intergenic	not near genes	chr3L_4_12960001	chr3L_12960001	RAL-563
642	chr3L	13525166	13525175	chr3L	13532957	13532971	roo	4	7794	3.5	5.5	4.5	0.7	7805	chr3L	13525166	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532971	intergenic	not near genes	chr3L_4_13525001	chr3L_13525001	RAL-563
648	chr3L	14312038	14312057	chr3L	14316852	14316870	X-element	4	4814	3.5	2.0	2.8	1.1	4832	chr3L	14312038	exon	fz +	chr3L	14314454	intron	fz +	chr3L	14316870	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-563
651	chr3L	14721181	14721209	chr3L	14723024	14723035	Rt1c	10	1840	3.0	2.0	2.5	2.9	1854	chr3L	14721181	intron	ome +	chr3L	14722108	intron	ome +	chr3L	14723035	intron	ome +	chr3L_10_14720001	chr3L_14720001	RAL-563
655	chr3L	15085049	15085079	chr3L	15086215	15086245	1360	5	1166	0.5	3.0	1.8	1.8	1196	chr3L	15085049	intron	cp309 -	chr3L	15085647	intron	cp309 -	chr3L	15086245	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-563
657	chr3L	15423770	15423779	chr3L	15426614	15426623	opus	4	2844	0.5	1.5	1.0	2.0	2853	chr3L	15423770	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426623	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-563
668	chr3L	15899225	15899252	chr3L	15899792	15899817	jockey	13	562	3.5	1.0	2.2	4.1	592	chr3L	15899225	intergenic	pHCl -	chr3L	15899521	intergenic	pHCl -	chr3L	15899817	intergenic	sff -	chr3L_13_15895001	chr3L_15895001	RAL-563
669	chr3L	15899253	15899263	chr3L	15899791	15899814	jockey	7	553	2.5	1.0	1.8	2.5	561	chr3L	15899253	intergenic	pHCl -	chr3L	15899534	intergenic	not near genes	chr3L	15899814	intergenic	sff -	chr3L_7_15895001	chr3L_15895001	RAL-563
673	chr3L	16184092	16184106	chr3L	16188936	16188950	X-element	4	4844	1.5	1.0	1.2	1.8	4858	chr3L	16184092	intergenic	not near genes	chr3L	16186521	intergenic	not near genes	chr3L	16188950	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-563
677	chr3L	16443850	16443877	chr3L	16446190	16446210	Doc	7	2338	1.0	3.0	2.0	2.3	2360	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446210	intron,intron	CG33158 +,dsx-c73A -	chr3L_7_16445001	chr3L_16445001	RAL-563
686	chr3L	16945726	16945755	chr3L	16954879	16954891	roo	6	9147	4.5	3.0	3.8	1.2	9165	chr3L	16945726	exon	Obp73a +	chr3L	16950308	intergenic	not near genes	chr3L	16954891	5` UTR	Nc73EF +	chr3L_6_16950001	chr3L_16950001	RAL-563
687	chr3L	17085018	17085033	chr3L	17094167	17094182	roo	8	9148	2.0	3.0	2.5	2.3	9164	chr3L	17085018	intron	Rbp6 -	chr3L	17089600	intron	Rbp6 -	chr3L	17094182	intron	Rbp6 -	chr3L_8_17085001	chr3L_17085001	RAL-563
693	chr3L	17516981	17517009	chr3L	17524539	17524567	412	11	7557	0.0	2.0	1.0	5.5	7586	chr3L	17516981	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524567	3` UTR	CG7564 +	chr3L_11_17520001	chr3L_17520001	RAL-563
703	chr3L	18514906	18514936	chr3L	18520097	18520127	BS	5	5191	0.5	1.5	1.0	2.5	5221	chr3L	18514906	intergenic	not near genes	chr3L	18517516	intergenic	not near genes	chr3L	18520127	intergenic	not near genes	chr3L_5_18515001	chr3L_18515001	RAL-563
706	chr3L	18528630	18528639	chr3L	18537791	18537799	roo	4	9160	0.5	0.0	0.2	3.3	9169	chr3L	18528630	intergenic	not near genes	chr3L	18533214	intergenic	not near genes	chr3L	18537799	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	RAL-563
712	chr3L	18772415	18772440	chr3L	18781096	18781121	roo	5	8681	1.5	1.5	1.5	2.0	8706	chr3L	18772415	intron	ftz-f1 -	chr3L	18776768	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_5_18775001	chr3L_18775001	RAL-563
714	chr3L	18833779	18833812	chr3L	18834943	18834975	1360	11	1163	0.5	0.5	0.5	7.3	1196	chr3L	18833779	intron	Indy -	chr3L	18834377	intron	Indy -	chr3L	18834975	intron	Indy -	chr3L_11_18830001	chr3L_18830001	RAL-563
716	chr3L	19008849	19008872	chr3L	19009187	19009210	jockey	4	338	2.5	7.0	4.8	0.7	361	chr3L	19008849	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009210	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-563
718	chr3L	19115638	19115671	chr3L	19115814	19115845	BS	8	176	3.0	2.0	2.5	2.3	207	chr3L	19115638	intron	CG14082 -	chr3L	19115742	intron	CG14082 -	chr3L	19115845	intron	CG14082 -	chr3L_8_19115001	chr3L_19115001	RAL-563
719	chr3L	19117057	19117064	chr3L	19124493	19124510	mdg1	5	7444	5.5	2.5	4.0	1.0	7453	chr3L	19117057	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124510	intron	CG14082 -	chr3L_5_19120001	chr3L_19120001	RAL-563
720	chr3L	19117066	19117072	chr3L	19124487	19124511	mdg1	4	7437	4.0	1.0	2.5	1.1	7445	chr3L	19117066	intron	CG14082 -	chr3L	19120788	intron	CG14082 -	chr3L	19124511	intron	CG14082 -	chr3L_4_19120001	chr3L_19120001	RAL-563
724	chr3L	19208058	19208088	chr3L	19209432	19209461	Doc	14	1373	1.0	0.0	0.5	9.3	1403	chr3L	19208058	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209461	intron	fz2 -	chr3L_14_19205001	chr3L_19205001	RAL-563
730	chr3L	19848510	19848535	chr3L	19857695	19857726	roo	5	9189	1.5	1.0	1.2	2.3	9216	chr3L	19848510	intron	Papss +	chr3L	19853118	intron	Papss +	chr3L	19857726	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-563
734	chr3L	21014913	21014935	chr3L	21023394	21023415	Tirant	8	8476	5.5	3.0	4.2	1.5	8502	chr3L	21014913	intron	skd -	chr3L	21019164	intron	skd -	chr3L	21023415	intron	skd -	chr3L_8_21015001	chr3L_21015001	RAL-563
737	chr3L	21151862	21151889	chr3L	21156946	21156962	flea	7	5082	1.5	0.5	1.0	3.5	5100	chr3L	21151862	intron	Ac78C -	chr3L	21154412	intron	Ac78C -	chr3L	21156962	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-563
738	chr3L	21243761	21243768	chr3L	21251324	21251331	412	5	7563	1.5	6.0	3.8	1.0	7570	chr3L	21243761	intron	Eip78C +	chr3L	21247546	intron	Eip78C +	chr3L	21251331	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	RAL-563
739	chr3L	21306146	21306174	chr3L	21315305	21315332	roo	4	9159	2.5	2.5	2.5	1.1	9186	chr3L	21306146	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310739	intron	Pc -	chr3L	21315332	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-563
745	chr3L	21498836	21498869	chr3L	21500472	21500505	1360	7	1633	1.0	1.5	1.2	3.2	1669	chr3L	21498836	intron	Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500505	intron	Glg1 -	chr3L_7_21495001	chr3L_21495001	RAL-563
746	chr3L	21749317	21749332	chr3L	21754474	21754492	Doc	5	5159	9.0	1.0	5.0	0.8	5175	chr3L	21749317	intron	Syn1 -	chr3L	21751904	intron	Syn1 -	chr3L	21754492	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-563
758	chr3L	22555783	22555790	chr3L	22563239	22563240	blood	4	7453	2.5	2.0	2.2	1.2	7457	chr3L	22555783	intergenic	not near genes	chr3L	22559512	intergenic	not near genes	chr3L	22563240	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-563
759	chr3L	22577619	22577644	chr3L	22582407	22582424	Doc	6	4786	4.5	1.5	3.0	1.5	4805	chr3L	22577619	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582424	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-563
768	chr3L	22989874	22989895	chr3L	22996834	22996869	297	9	6972	3.0	0.5	1.8	3.2	6995	chr3L	22989874	intergenic	not near genes	chr3L	22993372	intergenic	not near genes	chr3L	22996869	intergenic	not near genes	chr3L_9_22990001	chr3L_22990001	RAL-563
769	chr3L	23042241	23042256	chr3L	23048988	23049009	gypsy6	6	6751	4.5	5.5	5.0	1.0	6768	chr3L	23042241	intergenic	not near genes	chr3L	23045625	intergenic	not near genes	chr3L	23049009	intergenic	not near genes	chr3L_6_23045001	chr3L_23045001	RAL-563
773	chr3L	24012407	24012438	chr3L	24020745	24020776	roo	4	8331	2.0	0.0	1.0	2.0	8369	chr3L	24012407	intergenic	not near genes	chr3L	24016592	intergenic	not near genes	chr3L	24020776	intergenic	not near genes	chr3L_4_24015001	chr3L_24015001	RAL-563
774	chr3L	24168792	24168820	chr3L	24176120	24176124	ZAM	5	7319	3.0	4.0	3.5	1.1	7332	chr3L	24168792	intron	Snap25 +	chr3L	24172458	intron	Snap25 +	chr3L	24176124	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-563
778	chr3R	4206071	4206102	chr3R	4211646	4211677	mdg3	4	5575	1.0	1.5	1.2	1.8	5606	chr3R	4206071	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211677	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-563
780	chr3R	4408422	4408442	chr3R	4412726	4412746	Juan	5	4304	2.0	1.5	1.8	1.8	4324	chr3R	4408422	intron	CG32944 -	chr3R	4410584	intron	CG32944 -	chr3R	4412746	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	RAL-563
781	chr3R	4609556	4609575	chr3R	4610719	4610739	1360	7	1162	2.0	2.0	2.0	2.3	1183	chr3R	4609556	intergenic	not near genes	chr3R	4610148	intergenic	not near genes	chr3R	4610739	intergenic	not near genes	chr3R_7_4610001	chr3R_4610001	RAL-563
783	chr3R	4683181	4683207	chr3R	4684940	4684949	S-element	7	1757	2.5	5.5	4.0	1.4	1768	chr3R	4683181	intron	CG43427 +	chr3R	4684065	intron	CG43427 +	chr3R	4684949	intron	CG43427 +	chr3R_7_4680001	chr3R_4680001	RAL-563
788	chr3R	5045851	5045874	chr3R	5052953	5052976	HMS-Beagle	5	7102	1.5	3.0	2.2	1.6	7125	chr3R	5045851	intron	CR43635 -	chr3R	5049414	intergenic	not near genes	chr3R	5052976	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	RAL-563
791	chr3R	5338398	5338429	chr3R	5343575	5343601	Rt1c	8	5176	3.5	6.5	5.0	1.3	5203	chr3R	5338398	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343601	intron	mtd -	chr3R_8_5340001	chr3R_5340001	RAL-563
793	chr3R	5746015	5746044	chr3R	5746256	5746261	pogo	7	237	4.0	2.5	3.2	1.7	246	chr3R	5746015	3` UTR	Madm +	chr3R	5746138	3` UTR	Madm +	chr3R	5746261	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-563
794	chr3R	5809116	5809132	chr3R	5809356	5809371	pogo	5	240	3.5	3.5	3.5	1.1	255	chr3R	5809116	3` UTR	CG11000 +	chr3R	5809244	3` UTR	CG11000 +	chr3R	5809371	3` UTR	CG11000 +	chr3R_5_5805001	chr3R_5805001	RAL-563
797	chr3R	6015987	6015995	chr3R	6024472	6024485	Tirant	6	8495	2.0	3.0	2.5	1.7	8498	chr3R	6015987	intergenic	not near genes	chr3R	6020236	intergenic	not near genes	chr3R	6024485	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	RAL-563
800	chr3R	6158510	6158525	chr3R	6167093	6167107	Tirant	4	8582	3.0	4.0	3.5	0.9	8597	chr3R	6158510	intergenic	not near genes	chr3R	6162808	intergenic	not near genes	chr3R	6167107	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	RAL-563
801	chr3R	6158527	6158540	chr3R	6167091	6167116	Tirant	4	8574	2.5	3.5	3.0	1.0	8589	chr3R	6158527	intergenic	not near genes	chr3R	6162822	intergenic	not near genes	chr3R	6167116	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	RAL-563
805	chr3R	6206288	6206319	chr3R	6206505	6206536	BS	13	214	3.5	5.0	4.2	2.5	248	chr3R	6206288	exon	Osi24 +	chr3R	6206412	intron	Osi24 +	chr3R	6206536	intron	Osi24 +	chr3R_13_6205001	chr3R_6205001	RAL-563
812	chr3R	6737505	6737530	chr3R	6739285	6739314	Doc	6	1785	2.5	1.0	1.8	2.1	1809	chr3R	6737505	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739314	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-563
827	chr3R	8101762	8101784	chr3R	8104846	8104866	G2	13	3083	3.5	1.5	2.5	3.7	3104	chr3R	8101762	exon	CG7900 +	chr3R	8103314	intron	CG7900 +	chr3R	8104866	3` UTR	CG7900 +	chr3R_13_8100001	chr3R_8100001	RAL-563
832	chr3R	8403024	8403040	chr3R	8412178	8412206	roo	4	9162	1.0	2.0	1.5	1.6	9182	chr3R	8403024	intron	CG45263 -	chr3R	8407615	intron	CG45263 -	chr3R	8412206	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-563
834	chr3R	8570481	8570510	chr3R	8575116	8575146	HMS-Beagle	10	4635	1.0	3.5	2.2	3.1	4665	chr3R	8570481	intergenic	not near genes	chr3R	8572814	intergenic	not near genes	chr3R	8575146	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	RAL-563
835	chr3R	8601779	8601795	chr3R	8610918	8610926	roo	6	9143	3.0	1.0	2.0	2.0	9147	chr3R	8601779	intron	5-HT2B +	chr3R	8606352	intron	5-HT2B +	chr3R	8610926	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	RAL-563
837	chr3R	8707357	8707383	chr3R	8709794	8709824	jockey	9	2439	3.5	3.0	3.2	2.1	2467	chr3R	8707357	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709824	intergenic	not near genes	chr3R_9_8705001	chr3R_8705001	RAL-563
841	chr3R	9319587	9319609	chr3R	9320022	9320044	jockey	6	435	2.5	4.0	3.2	1.4	457	chr3R	9319587	intron	CG8861 -	chr3R	9319816	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-563
852	chr3R	10957869	10957881	chr3R	10963254	10963270	Rt1c	5	5384	4.0	3.0	3.5	1.1	5401	chr3R	10957869	intergenic	not near genes	chr3R	10960570	intergenic	not near genes	chr3R	10963270	intergenic	not near genes	chr3R_5_10960001	chr3R_10960001	RAL-563
861	chr3R	11379240	11379269	chr3R	11388395	11388422	roo	7	9154	0.5	2.0	1.2	3.2	9182	chr3R	11379240	intron	pros +	chr3R	11383831	intron	pros +	chr3R	11388422	intron	pros +	chr3R_7_11380001	chr3R_11380001	RAL-563
865	chr3R	11841079	11841093	chr3R	11846270	11846284	BS	6	5190	3.5	6.0	4.8	1.0	5205	chr3R	11841079	intron	CG6959 -	chr3R	11843682	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	RAL-563
877	chr3R	13143039	13143065	chr3R	13148615	13148616	mdg3	7	5566	4.5	3.0	3.8	1.5	5577	chr3R	13143039	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145828	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148616	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	RAL-563
887	chr3R	14246401	14246411	chr3R	14247896	14247902	jockey	6	1494	3.5	4.0	3.8	1.2	1501	chr3R	14246401	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247902	intergenic	not near genes	chr3R_6_14245001	chr3R_14245001	RAL-563
898	chr3R	15132064	15132086	chr3R	15135122	15135146	Juan	6	3056	5.0	5.5	5.2	1.0	3082	chr3R	15132064	intergenic	CG42788 -	chr3R	15133605	intergenic	not near genes	chr3R	15135146	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-563
903	chr3R	15601170	15601194	chr3R	15608691	15608715	412	4	7521	4.0	2.0	3.0	1.0	7545	chr3R	15601170	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608715	intergenic	not near genes	chr3R_4_15600001	chr3R_15600001	RAL-563
914	chr3R	16756321	16756352	chr3R	16762512	16762543	diver	6	6188	1.0	1.0	1.0	3.0	6222	chr3R	16756321	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762543	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-563
917	chr3R	17294668	17294701	chr3R	17295096	17295129	BS	4	428	1.0	0.5	0.8	2.2	461	chr3R	17294668	intergenic	not near genes	chr3R	17294898	intergenic	not near genes	chr3R	17295129	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-563
923	chr3R	17925852	17925885	chr3R	17927319	17927352	hobo	11	1463	5.0	4.5	4.8	1.9	1500	chr3R	17925852	intron	cpo +	chr3R	17926602	intron	cpo +	chr3R	17927352	intron	cpo +	chr3R_11_17925001	chr3R_17925001	RAL-563
924	chr3R	18061589	18061609	chr3R	18063156	18063177	F-element	5	1568	0.0	1.5	0.8	2.8	1588	chr3R	18061589	intergenic	not near genes	chr3R	18062383	intergenic	not near genes	chr3R	18063177	intergenic	not near genes	chr3R_5_18060001	chr3R_18060001	RAL-563
943	chr3R	20331004	20331027	chr3R	20331490	20331513	roo	4	486	1.0	0.0	0.5	2.7	509	chr3R	20331004	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331513	intergenic	not near genes	chr3R_4_20330001	chr3R_20330001	RAL-563
946	chr3R	20506595	20506616	chr3R	20507398	20507419	BS	4	803	1.0	1.5	1.2	1.8	824	chr3R	20506595	intergenic	Or92a +	chr3R	20507007	intergenic	CG4288 -	chr3R	20507419	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-563
957	chr3R	21141675	21141707	chr3R	21150154	21150184	Tirant	21	8470	5.5	5.0	5.2	3.4	8509	chr3R	21141675	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150184	intron	SNF4Agamma +	chr3R_21_21145001	chr3R_21145001	RAL-563
964	chr3R	21609003	21609041	chr3R	21611637	21611674	NOF	10	2631	3.0	2.5	2.8	2.6	2671	chr3R	21609003	intron	InR -	chr3R	21610338	intron	InR -	chr3R	21611674	intron	InR -	chr3R_10_21610001	chr3R_21610001	RAL-563
965	chr3R	21761132	21761150	chr3R	21768524	21768541	mdg1	6	7388	5.5	5.5	5.5	0.9	7409	chr3R	21761132	exon	CG42335 +	chr3R	21764836	intron	CG42335 +	chr3R	21768541	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-563
972	chr3R	22450554	22450575	chr3R	22453194	22453215	NOF	12	2639	5.0	5.0	5.0	2.0	2661	chr3R	22450554	intron	CG34376 +	chr3R	22451884	intron	CG34376 +	chr3R	22453215	intron	CG34376 +	chr3R_12_22450001	chr3R_22450001	RAL-563
996	chr3R	23558402	23558413	chr3R	23560183	23560194	Bari1	4	1781	1.0	3.0	2.0	1.3	1792	chr3R	23558402	intron	beat-IV +	chr3R	23559298	intron	beat-IV +	chr3R	23560194	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-563
998	chr3R	23684697	23684724	chr3R	23685181	23685208	roo	5	476	3.5	9.5	6.5	0.7	511	chr3R	23684697	exon	CG18754 +	chr3R	23684952	intron	CG18754 +	chr3R	23685208	exon	CG18754 +	chr3R_5_23680001	chr3R_23680001	RAL-563
1003	chr3R	24072086	24072109	chr3R	24072523	24072538	jockey	6	432	7.5	0.0	3.8	1.2	452	chr3R	24072086	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072538	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-563
1004	chr3R	24076919	24076943	chr3R	24078383	24078409	hobo	7	1466	5.5	6.5	6.0	1.0	1490	chr3R	24076919	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078409	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-563
1007	chr3R	24207233	24207244	chr3R	24212307	24212320	flea	5	5075	7.0	6.5	6.8	0.6	5087	chr3R	24207233	intron	twin -	chr3R	24209776	intron	twin -	chr3R	24212320	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-563
1013	chr3R	24730098	24730124	chr3R	24732466	24732480	Doc	8	2368	1.5	0.5	1.0	4.0	2382	chr3R	24730098	intron	tok +	chr3R	24731289	intron	tok +	chr3R	24732480	intron	tok +	chr3R_8_24730001	chr3R_24730001	RAL-563
1015	chr3R	24927142	24927149	chr3R	24931932	24931940	Doc	4	4790	1.5	0.5	1.0	2.0	4798	chr3R	24927142	intergenic	Trf4-2 +	chr3R	24929541	intergenic	not near genes	chr3R	24931940	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-563
1026	chr3R	25832694	25832718	chr3R	25841876	25841900	roo	9	9181	2.0	3.5	2.8	2.4	9206	chr3R	25832694	exon	alpha4GT2 +	chr3R	25837297	intron	alpha4GT2 +	chr3R	25841900	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-563
1030	chr3R	26376324	26376348	chr3R	26385483	26385507	roo	7	9159	4.0	0.0	2.0	2.3	9183	chr3R	26376324	intergenic	not near genes	chr3R	26380916	intergenic	not near genes	chr3R	26385507	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-563
1038	chr3R	27140514	27140545	chr3R	27148124	27148155	412	9	7608	2.5	2.0	2.2	2.8	7641	chr3R	27140514	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148155	intron	CG6051 -	chr3R_9_27140001	chr3R_27140001	RAL-563
1048	chr3R	27856761	27856778	chr3R	27858244	27858261	hopper2	4	1482	2.0	0.5	1.2	1.8	1500	chr3R	27856761	intron	CG34353 -	chr3R	27857511	intron	CG34353 -	chr3R	27858261	intron	CG34353 -	chr3R_4_27855001	chr3R_27855001	RAL-563
1049	chr3R	28068496	28068510	chr3R	28073938	28073951	I-element	4	5442	1.0	0.5	0.8	2.2	5455	chr3R	28068496	intron	CG34362 +	chr3R	28071224	intron	CG34362 +	chr3R	28073951	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-563
1053	chr3R	28253346	28253364	chr3R	28255853	28255874	jockey	7	2509	2.0	3.5	2.8	1.8	2528	chr3R	28253346	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255874	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-563
1054	chr3R	28302105	28302127	chr3R	28302538	28302566	jockey	10	436	0.0	3.5	1.8	3.6	461	chr3R	28302105	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302566	intergenic	not near genes	chr3R_10_28300001	chr3R_28300001	RAL-563
1072	chr3R	29406631	29406646	chr3R	29407903	29407932	jockey	9	1284	1.5	6.5	4.0	1.8	1301	chr3R	29406631	intron	Ptp99A +	chr3R	29407282	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_9_29405001	chr3R_29405001	RAL-563
1079	chr3R	29738265	29738292	chr3R	29739732	29739759	hobo	9	1466	1.5	1.0	1.2	4.1	1494	chr3R	29738265	intergenic	CG1969 +,CG7598 +	chr3R	29739012	intron	CG1969 +	chr3R	29739759	5` UTR	CG1969 +	chr3R_9_29735001	chr3R_29735001	RAL-563
1083	chr3R	30084866	30084884	chr3R	30086314	30086351	hobo	7	1464	4.5	3.0	3.8	1.5	1485	chr3R	30084866	intron	sima +	chr3R	30085608	intron	sima +	chr3R	30086351	intron	sima +	chr3R_7_30085001	chr3R_30085001	RAL-563
1085	chr3R	30238759	30238792	chr3R	30239923	30239949	1360	5	1163	2.0	0.5	1.2	2.3	1190	chr3R	30238759	intergenic	not near genes	chr3R	30239354	intergenic	not near genes	chr3R	30239949	intergenic	not near genes	chr3R_5_30235001	chr3R_30235001	RAL-563
1088	chr3R	30317334	30317358	chr3R	30324926	30324950	roo	5	7592	0.0	3.5	1.8	1.8	7616	chr3R	30317334	intron	hdc +	chr3R	30321142	intron	hdc +	chr3R	30324950	intron	hdc +	chr3R_5_30320001	chr3R_30320001	RAL-563
1090	chr3R	30375540	30375569	chr3R	30383165	30383194	412	5	7625	0.5	2.0	1.2	2.3	7654	chr3R	30375540	intergenic	not near genes	chr3R	30379367	intergenic	not near genes	chr3R	30383194	intergenic	not near genes	chr3R_5_30375001	chr3R_30375001	RAL-563
1091	chr3R	30396222	30396247	chr3R	30404488	30404512	roo	4	8265	0.5	3.0	1.8	1.4	8290	chr3R	30396222	intergenic	not near genes	chr3R	30400367	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-563
1092	chr3R	30480473	30480508	chr3R	30482941	30482976	jockey	9	2467	2.0	6.0	4.0	1.8	2503	chr3R	30480473	intron	PH4alphaEFB +	chr3R	30481724	intron	PH4alphaEFB +	chr3R	30482976	intron	PH4alphaEFB +	chr3R_9_30480001	chr3R_30480001	RAL-563
1098	chr3R	31074234	31074250	chr3R	31081832	31081848	springer	7	7598	2.0	0.0	1.0	3.5	7614	chr3R	31074234	intron	Sox100B +	chr3R	31078041	intron	Sox100B +	chr3R	31081848	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	RAL-563
1102	chr3R	31413093	31413123	chr3R	31418293	31418311	copia	13	5199	3.5	0.0	1.8	4.6	5218	chr3R	31413093	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418311	intron	Gprk2 +	chr3R_13_31415001	chr3R_31415001	RAL-563
1104	chr3R	31691533	31691558	chr3R	31696299	31696324	Doc	11	4766	4.0	4.5	4.2	2.1	4791	chr3R	31691533	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696324	intergenic	not near genes	chr3R_11_31690001	chr3R_31690001	RAL-563
1105	chr3R	31691560	31691564	chr3R	31696298	31696313	Doc	6	4746	4.0	4.5	4.2	1.2	4753	chr3R	31691560	intergenic	not near genes	chr3R	31693936	intergenic	not near genes	chr3R	31696313	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	RAL-563
1110	chr3R	31998000	31998013	chr3R	32005470	32005483	blood	7	7469	1.0	3.5	2.2	2.2	7483	chr3R	31998000	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005483	intron	heph -	chr3R_7_32000001	chr3R_32000001	RAL-563
1112	chrX	551421	551454	chrX	558983	559016	412	10	7560	3.0	1.0	2.0	3.3	7595	chrX	551421	intron	Appl +	chrX	555218	intron	Appl +	chrX	559016	intron	Appl +	chrX_10_555001	chrX_555001	RAL-563
1122	chrX	906724	906732	chrX	908513	908521	S-element	4	1789	2.5	8.0	5.2	0.6	1797	chrX	906724	intron	CG43867 -	chrX	907622	intron	CG43867 -	chrX	908521	intron	CG43867 -	chrX_4_905001	chrX_905001	RAL-563
1126	chrX	1357776	1357802	chrX	1367946	1367972	Doc	7	10170	2.5	1.5	2.0	2.3	10196	chrX	1357776	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367972	intergenic	not near genes	chrX_7_1360001	chrX_1360001	RAL-563
1128	chrX	1518038	1518072	chrX	1523440	1523471	jockey	5	5400	3.0	1.5	2.2	1.6	5433	chrX	1518038	intergenic	inc +	chrX	1520754	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_5_1520001	chrX_1520001	RAL-563
1129	chrX	1627977	1628002	chrX	1635440	1635470	gtwin	12	7466	7.0	2.5	4.8	2.1	7493	chrX	1627977	intron,intron	Mur2B -,br +	chrX	1631724	intron,intron	Mur2B -,br +	chrX	1635470	intron,intron	Mur2B -,br +	chrX_12_1630001	chrX_1630001	RAL-563
1130	chrX	1954892	1954917	chrX	1962831	1962856	Stalker2	4	7936	3.0	1.0	2.0	1.3	7964	chrX	1954892	intron	Hr4 +	chrX	1958874	intron	Hr4 +	chrX	1962856	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-563
1138	chrX	2844900	2844930	chrX	2852309	2852332	mdg1	5	7408	1.0	0.5	0.8	2.8	7432	chrX	2844900	intron	kirre +	chrX	2848616	intron	kirre +	chrX	2852332	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-563
1142	chrX	3075636	3075667	chrX	3080942	3080973	Transpac	5	5306	0.5	1.5	1.0	2.5	5337	chrX	3075636	intron	kirre +	chrX	3078304	intron	kirre +	chrX	3080973	intron	kirre +	chrX_5_3075001	chrX_3075001	RAL-563
1144	chrX	3493099	3493121	chrX	3502258	3502280	roo	9	9158	1.0	0.5	0.8	5.0	9181	chrX	3493099	intron,intron	CR44999 +,Gas8 -	chrX	3497690	intron,intron	CR44999 +,Gas8 -	chrX	3502280	intron,intron	CR44999 +,Gas8 -	chrX_9_3495001	chrX_3495001	RAL-563
1145	chrX	3597554	3597578	chrX	3619722	3619746	roo	10	22168	1.0	2.0	1.5	4.0	22192	chrX	3597554	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619746	intron	AstA-R1 +	chrX_10_3605001	chrX_3605001	RAL-563
1148	chrX	3726765	3726797	chrX	3730162	3730194	NOF	9	3397	0.5	4.5	2.5	2.6	3429	chrX	3726765	intron	tlk +	chrX	3728480	intron	tlk +	chrX	3730194	intron	tlk +	chrX_9_3725001	chrX_3725001	RAL-563
1150	chrX	3986870	3986893	chrX	3994503	3994523	412	5	7632	2.0	4.0	3.0	1.2	7653	chrX	3986870	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994523	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-563
1154	chrX	4700408	4700425	chrX	4700751	4700762	jockey	5	341	0.0	4.0	2.0	1.7	354	chrX	4700408	3` UTR	ctp +	chrX	4700585	3` UTR	ctp +	chrX	4700762	3` UTR	ctp +	chrX_5_4700001	chrX_4700001	RAL-563
1155	chrX	4731815	4731829	chrX	4736907	4736922	jockey	7	5093	5.5	6.0	5.8	1.0	5107	chrX	4731815	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_7_4730001	chrX_4730001	RAL-563
1156	chrX	4763262	4763276	chrX	4763749	4763750	Stalker4	5	485	1.0	1.5	1.2	2.3	488	chrX	4763262	intergenic	not near genes	chrX	4763506	intergenic	not near genes	chrX	4763750	intergenic	not near genes	chrX_5_4760001	chrX_4760001	RAL-563
1157	chrX	4792396	4792409	chrX	4792829	4792842	jockey	6	433	4.0	7.0	5.5	0.9	446	chrX	4792396	intergenic	not near genes	chrX	4792619	intergenic	not near genes	chrX	4792842	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-563
1158	chrX	1562990	1562990	chrX	4805472	4805477	opus	4	3242486	11.5	7.5	9.5	0.4	3242487	chrX	1562990	intron	Mur2B -	chrX	3184234	intron	dnc +	chrX	4805477	3` UTR	CR45516 -	chrX_4_3180001	chrX_3180001	RAL-563
1159	chrX	4827997	4828001	chrX	4835345	4835371	Stalker4	7	7359	4.0	3.0	3.5	1.6	7374	chrX	4827997	intergenic	not near genes	chrX	4831684	intergenic	not near genes	chrX	4835371	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-563
1164	chrX	6171593	6171612	chrX	6179026	6179045	Quasimodo	4	7433	1.0	1.0	1.0	2.0	7452	chrX	6171593	intron	Ca-alpha1T -	chrX	6175319	intron	Ca-alpha1T -	chrX	6179045	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-563
1167	chrX	6335223	6335243	chrX	6337733	6337752	Tirant	9	2510	0.0	2.5	1.2	4.1	2529	chrX	6335223	intergenic	not near genes	chrX	6336488	intergenic	not near genes	chrX	6337752	intergenic	CG3842 +	chrX_9_6335001	chrX_6335001	RAL-563
1168	chrX	6392873	6392904	chrX	6397638	6397669	Doc	6	4763	2.5	2.5	2.5	1.7	4796	chrX	6392873	intergenic	not near genes	chrX	6395271	intergenic	not near genes	chrX	6397669	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-563
1170	chrX	6562820	6562830	chrX	6571300	6571312	Tirant	4	8480	6.0	2.0	4.0	0.8	8492	chrX	6562820	intron	CG34417 +	chrX	6567066	intron	CG34417 +	chrX	6571312	intron	CG34417 +	chrX_4_6565001	chrX_6565001	RAL-563
1171	chrX	6562833	6562851	chrX	6571298	6571333	Tirant	12	8475	2.5	1.0	1.8	4.3	8500	chrX	6562833	intron	CG34417 +	chrX	6567083	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_12_6565001	chrX_6565001	RAL-563
1173	chrX	7023600	7023631	chrX	7030990	7031021	Tabor	12	7388	3.0	1.0	2.0	4.0	7421	chrX	7023600	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031021	intron	CG12541 -	chrX_12_7025001	chrX_7025001	RAL-563
1174	chrX	7125260	7125277	chrX	7134419	7134436	roo	5	9159	0.5	1.5	1.0	2.5	9176	chrX	7125260	intergenic	not near genes	chrX	7129848	intergenic	not near genes	chrX	7134436	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-563
1175	chrX	7702906	7702931	chrX	7703343	7703370	jockey	8	438	2.5	3.0	2.8	2.1	464	chrX	7702906	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703370	intron	CHES-1-like -	chrX_8_7700001	chrX_7700001	RAL-563
1181	chrX	8922338	8922363	chrX	8922772	8922794	jockey	13	433	1.5	1.5	1.5	5.2	456	chrX	8922338	intron	rdgA +	chrX	8922566	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_13_8920001	chrX_8920001	RAL-563
1183	chrX	9575801	9575821	chrX	9576113	9576145	mdg3	7	321	3.0	0.5	1.8	2.5	344	chrX	9575801	intron,exon	CG32699 -,CG42395 -	chrX	9575973	intron,intron	CG32699 -,CG42395 -	chrX	9576145	intron,5` UTR	CG32699 -,CG42395 -	chrX_7_9575001	chrX_9575001	RAL-563
1186	chrX	10550853	10550888	chrX	10552318	10552354	hobo	7	1466	1.0	4.5	2.8	1.8	1501	chrX	10550853	intron	spri -	chrX	10551604	intron	spri -	chrX	10552354	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-563
1187	chrX	10772692	10772697	chrX	10772758	10772780	Tirant	5	79	1.5	1.0	1.2	2.3	88	chrX	10772692	intron	CG15211 +	chrX	10772736	intron	CG15211 +	chrX	10772780	intron	CG15211 +	chrX_5_10770001	chrX_10770001	RAL-563
1190	chrX	11312083	11312090	chrX	11319415	11319442	Stalker2	10	7348	0.5	1.5	1.0	5.0	7359	chrX	11312083	intergenic	not near genes	chrX	11315762	intergenic	not near genes	chrX	11319442	intergenic	not near genes	chrX_10_11315001	chrX_11315001	RAL-563
1193	chrX	12301955	12301985	chrX	12303260	12303290	X-element	4	1303	1.0	0.0	0.5	2.7	1335	chrX	12301955	intron	Ten-a +	chrX	12302622	intron	Ten-a +	chrX	12303290	intron	Ten-a +	chrX_4_12300001	chrX_12300001	RAL-563
1198	chrX	13429481	13429493	chrX	13430630	13430642	jockey	4	1149	0.0	3.0	1.5	1.6	1161	chrX	13429481	intergenic	not near genes	chrX	13430062	intergenic	not near genes	chrX	13430642	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-563
1200	chrX	13937985	13938006	chrX	13941256	13941277	I-element	4	3271	1.0	1.0	1.0	2.0	3292	chrX	13937985	intron	mamo -	chrX	13939631	intron	mamo -	chrX	13941277	intron	mamo -	chrX_4_13935001	chrX_13935001	RAL-563
1203	chrX	14636460	14636480	chrX	14641901	14641904	I-element	5	5438	4.5	3.0	3.8	1.0	5444	chrX	14636460	intron	NetA -	chrX	14639182	intron	NetA -	chrX	14641904	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-563
1204	chrX	14636483	14636493	chrX	14641898	14641934	I-element	7	5436	3.5	3.0	3.2	1.7	5451	chrX	14636483	intron	NetA -	chrX	14639208	intron	NetA -	chrX	14641934	intron	NetA -	chrX_7_14635001	chrX_14635001	RAL-563
1209	chrX	15273719	15273736	chrX	15274868	15274886	1360	8	1157	1.5	4.0	2.8	2.1	1167	chrX	15273719	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274886	intergenic	not near genes	chrX_8_15270001	chrX_15270001	RAL-563
1210	chrX	15413049	15413082	chrX	15417351	15417367	Juan	4	4296	4.5	2.5	3.5	0.9	4318	chrX	15413049	intron	Cngl -	chrX	15415208	intron	Cngl -	chrX	15417367	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-563
1217	chrX	17556941	17556954	chrX	17557440	17557453	mdg1	6	498	3.5	2.0	2.8	1.6	512	chrX	17556941	intron	CG43658 -	chrX	17557197	intron	CG43658 -	chrX	17557453	intron	CG43658 -	chrX_6_17555001	chrX_17555001	RAL-563
1223	chrX	18194071	18194099	chrX	18194606	18194634	BS	7	535	0.5	2.5	1.5	2.8	563	chrX	18194071	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194634	intron	Frq2 +	chrX_7_18190001	chrX_18190001	RAL-563
1234	chrX	19472121	19472158	chrX	19472691	19472728	jockey	7	569	2.0	1.0	1.5	2.8	607	chrX	19472121	intergenic	kek5 +	chrX	19472424	intergenic	not near genes	chrX	19472728	intergenic	not near genes	chrX_7_19470001	chrX_19470001	RAL-563
1236	chrX	19710083	19710104	chrX	19711868	19711890	S-element	8	1786	1.0	3.5	2.2	2.5	1807	chrX	19710083	intron	meso18E -	chrX	19710986	intron	meso18E -	chrX	19711890	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-563
1246	chrX	20377326	20377349	chrX	20378792	20378816	hobo	8	1465	1.5	3.0	2.2	2.5	1490	chrX	20377326	intergenic	not near genes	chrX	20378071	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_8_20375001	chrX_20375001	RAL-563
1248	chrX	20504126	20504151	chrX	20505647	20505669	transib2	4	1520	1.0	2.5	1.8	1.4	1543	chrX	20504126	intron	RhoGAP19D -	chrX	20504898	intron	RhoGAP19D -	chrX	20505669	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-563
1249	chrX	20940723	20940755	chrX	20942192	20942224	hobo	10	1468	2.5	2.0	2.2	3.1	1501	chrX	20940723	intergenic	not near genes	chrX	20941474	intergenic	not near genes	chrX	20942224	intergenic	not near genes	chrX_10_20940001	chrX_20940001	RAL-563
1251	chrX	21458695	21458726	chrX	21464130	21464162	Ivk	5	5436	2.0	4.0	3.0	1.2	5467	chrX	21458695	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464162	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-563
1256	chrX	22697523	22697523	chrX	22701809	22701820	Juan	4	4293	2.0	4.5	3.2	1.0	4297	chrX	22697523	intron	CR44997 +	chrX	22699672	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-563