SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47472 47481 chr2L 52577 52586 jockey 4 5104 5.0 6.5 5.8 0.6 5114 chr2L 47472 intron Cda5 - chr2L 50029 intron Cda5 - chr2L 52586 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-563 2 chr2L 80174 80192 chr2L 80260 80278 4 86 8.0 10.0 9.0 0.4 104 chr2L 80174 intergenic not near genes chr2L 80226 intergenic not near genes chr2L 80278 intergenic not near genes chr2L_4_80001 chr2L_80001 RAL-563 3 chr2L 174247 174276 chr2L 174334 174363 5 79 1.0 1.0 1.0 2.5 116 chr2L 174247 intron spen + chr2L 174305 intron spen + chr2L 174363 intron spen + chr2L_5_170001 chr2L_170001 RAL-563 4 chr2L 325134 325154 chr2L 325211 325231 7 75 10.5 6.0 8.2 0.8 97 chr2L 325134 intron Plc21C + chr2L 325182 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-563 5 chr2L 325892 325925 chr2L 325969 326002 5 77 8.5 8.0 8.2 0.5 110 chr2L 325892 intron,exon Plc21C +,CG43755 - chr2L 325947 intron,exon Plc21C +,CG43755 - chr2L 326002 intron,exon Plc21C +,CG43755 - chr2L_5_325001 chr2L_325001 RAL-563 6 chr2L 628492 628523 chr2L 628616 628647 6 124 6.0 5.0 5.5 0.9 155 chr2L 628492 intergenic CR45369 +,CG2839 + chr2L 628570 intergenic CR45369 +,CG2839 + chr2L 628647 intergenic CR45369 +,CG2839 + chr2L_6_625001 chr2L_625001 RAL-563 7 chr2L 686922 686941 chr2L 695962 695981 roo 7 9040 3.0 3.0 3.0 1.8 9059 chr2L 686922 intron ds - chr2L 691452 intron ds - chr2L 695981 intron ds - chr2L_7_690001 chr2L_690001 RAL-563 8 chr2L 750033 750037 chr2L 750141 750159 4 118 7.0 5.5 6.2 0.6 126 chr2L 750033 5` UTR GABA-B-R3 + chr2L 750096 5` UTR GABA-B-R3 + chr2L 750159 5` UTR GABA-B-R3 + chr2L_4_750001 chr2L_750001 RAL-563 9 chr2L 763605 763630 chr2L 763681 763693 7 73 3.5 13.0 8.2 0.8 88 chr2L 763605 intergenic not near genes chr2L 763649 intergenic not near genes chr2L 763693 intergenic not near genes chr2L_7_760001 chr2L_760001 RAL-563 10 chr2L 764565 764592 chr2L 764645 764672 7 81 1.5 1.5 1.5 2.8 107 chr2L 764565 intergenic not near genes chr2L 764618 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_7_760001 chr2L_760001 RAL-563 11 chr2L 770473 770483 chr2L 772253 772264 Bari1 5 1780 4.0 4.5 4.2 1.0 1791 chr2L 770473 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772264 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-563 12 chr2L 848618 848636 chr2L 848701 848719 4 84 9.5 6.5 8.0 0.4 101 chr2L 848618 intron drongo - chr2L 848668 intron drongo - chr2L 848719 intron drongo - chr2L_4_845001 chr2L_845001 RAL-563 13 chr2L 877844 877862 chr2L 877925 877944 4 81 7.0 10.0 8.5 0.4 100 chr2L 877844 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-563 14 chr2L 927860 927880 chr2L 928012 928032 5 151 6.0 5.0 5.5 0.8 172 chr2L 927860 intron CG4341 + chr2L 927946 intron CG4341 + chr2L 928032 intron CG4341 + chr2L_5_925001 chr2L_925001 RAL-563 15 chr2L 950317 950342 chr2L 950402 950427 6 84 7.5 9.0 8.2 0.7 110 chr2L 950317 intron CG4341 + chr2L 950372 intron CG4341 + chr2L 950427 intron CG4341 + chr2L_6_950001 chr2L_950001 RAL-563 16 chr2L 976878 976910 chr2L 984514 984546 roo 4 7636 1.5 0.0 0.8 2.2 7668 chr2L 976878 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-563 17 chr2L 1126685 1126700 chr2L 1126756 1126776 5 75 11.0 9.5 10.2 0.4 91 chr2L 1126685 intron Pino - chr2L 1126730 intron Pino - chr2L 1126776 intron Pino - chr2L_5_1125001 chr2L_1125001 RAL-563 18 chr2L 1156859 1156893 chr2L 1156964 1156964 5 98 0.0 1.5 0.8 2.8 105 chr2L 1156859 intron capt - chr2L 1156912 intron capt - chr2L 1156964 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-563 19 chr2L 1220133 1220160 chr2L 1227599 1227626 blood 6 7464 1.0 0.5 0.8 3.3 7493 chr2L 1220133 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-563 20 chr2L 1410722 1410739 chr2L 1410805 1410827 6 86 10.5 10.0 10.2 0.5 105 chr2L 1410722 intron lea - chr2L 1410774 intron lea - chr2L 1410827 intron lea - chr2L_6_1410001 chr2L_1410001 RAL-563 21 chr2L 1505860 1505874 chr2L 1506008 1506018 4 147 2.5 1.0 1.8 1.4 158 chr2L 1505860 intergenic not near genes chr2L 1505939 intergenic not near genes chr2L 1506018 intergenic not near genes chr2L_4_1505001 chr2L_1505001 RAL-563 22 chr2L 1511972 1511996 chr2L 1512070 1512094 5 98 5.5 5.5 5.5 0.8 122 chr2L 1511972 intergenic not near genes chr2L 1512033 intergenic not near genes chr2L 1512094 intergenic not near genes chr2L_5_1510001 chr2L_1510001 RAL-563 23 chr2L 1539863 1539875 chr2L 1539956 1539968 4 93 1.0 1.5 1.2 1.8 105 chr2L 1539863 intergenic not near genes chr2L 1539916 intergenic not near genes chr2L 1539968 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-563 24 chr2L 1568824 1568848 chr2L 1568923 1568947 6 99 5.0 6.5 5.8 0.9 123 chr2L 1568824 intron haf + chr2L 1568886 intron haf + chr2L 1568947 intron haf + chr2L_6_1565001 chr2L_1565001 RAL-563 25 chr2L 1570706 1570717 chr2L 1573578 1573589 F-element 6 2872 3.0 2.5 2.8 1.6 2883 chr2L 1570706 intron haf + chr2L 1572148 intron haf + chr2L 1573589 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-563 26 chr2L 1590960 1590988 chr2L 1591036 1591062 4 76 3.5 8.5 6.0 0.6 102 chr2L 1590960 intron haf + chr2L 1591011 intron haf + chr2L 1591062 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-563 27 chr2L 1711354 1711389 chr2L 1711678 1711707 mdg3 15 320 4.0 6.5 5.2 2.4 353 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711530 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_15_1710001 chr2L_1710001 RAL-563 28 chr2L 1737523 1737544 chr2L 1737762 1737783 10 240 13.5 3.0 8.2 1.1 260 chr2L 1737523 intron CG17646 + chr2L 1737653 intron CG17646 + chr2L 1737783 intron CG17646 + chr2L_10_1735001 chr2L_1735001 RAL-563 29 chr2L 1828420 1828434 chr2L 1828503 1828518 4 83 8.5 7.5 8.0 0.4 98 chr2L 1828420 intergenic not near genes chr2L 1828469 intergenic not near genes chr2L 1828518 intergenic not near genes chr2L_4_1825001 chr2L_1825001 RAL-563 30 chr2L 1917193 1917216 chr2L 1917271 1917294 4 77 10.0 9.0 9.5 0.4 101 chr2L 1917193 intron CG7337 + chr2L 1917244 intron CG7337 + chr2L 1917294 intron CG7337 + chr2L_4_1915001 chr2L_1915001 RAL-563 31 chr2L 1957089 1957104 chr2L 1957168 1957183 5 79 5.0 4.5 4.8 0.9 94 chr2L 1957089 intron erm - chr2L 1957136 intron erm - chr2L 1957183 intron erm - chr2L_5_1955001 chr2L_1955001 RAL-563 32 chr2L 1993205 1993229 chr2L 1993291 1993315 5 85 7.5 8.0 7.8 0.6 110 chr2L 1993205 intergenic not near genes chr2L 1993260 intergenic not near genes chr2L 1993315 intergenic not near genes chr2L_5_1990001 chr2L_1990001 RAL-563 33 chr2L 2025866 2025885 chr2L 2026125 2026146 4 260 2.5 7.5 5.0 0.7 280 chr2L 2025866 intron CG4238 + chr2L 2026006 intron CG4238 + chr2L 2026146 intron CG4238 + chr2L_4_2025001 chr2L_2025001 RAL-563 34 chr2L 2046611 2046644 chr2L 2047084 2047117 13 472 14.0 7.5 10.8 1.1 506 chr2L 2046611 exon Kebab + chr2L 2046864 exon Kebab + chr2L 2047117 exon Kebab + chr2L_13_2045001 chr2L_2045001 RAL-563 35 chr2L 2049228 2049232 chr2L 2049312 2049314 4 83 0.0 1.5 0.8 2.2 86 chr2L 2049228 intergenic not near genes chr2L 2049271 intergenic not near genes chr2L 2049314 intergenic not near genes chr2L_4_2045001 chr2L_2045001 RAL-563 36 chr2L 2100380 2100405 chr2L 2109531 2109549 roo 13 9150 2.0 4.0 3.0 3.2 9169 chr2L 2100380 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109549 intron dpr3 - chr2L_13_2100001 chr2L_2100001 RAL-563 37 chr2L 2145753 2145777 chr2L 2145839 2145863 4 86 4.0 4.5 4.2 0.8 110 chr2L 2145753 3` UTR CG11723 - chr2L 2145808 3` UTR CG11723 - chr2L 2145863 3` UTR CG11723 - chr2L_4_2145001 chr2L_2145001 RAL-563 38 chr2L 2207666 2207679 chr2L 2207746 2207760 5 79 15.5 6.0 10.8 0.4 94 chr2L 2207666 exon CG33124 - chr2L 2207713 exon CG33124 - chr2L 2207760 exon CG33124 - chr2L_5_2205001 chr2L_2205001 RAL-563 39 chr2L 2260813 2260835 chr2L 2260898 2260917 5 85 6.5 7.0 6.8 0.6 104 chr2L 2260813 intergenic not near genes chr2L 2260865 intergenic not near genes chr2L 2260917 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-563 40 chr2L 2267989 2268008 chr2L 2268070 2268095 5 86 2.5 8.0 5.2 0.8 106 chr2L 2267989 intergenic CG17242 - chr2L 2268042 intergenic CG17242 - chr2L 2268095 intergenic CG17242 - chr2L_5_2265001 chr2L_2265001 RAL-563 41 chr2L 2330884 2330895 chr2L 2330973 2330984 4 89 1.5 2.5 2.0 1.3 100 chr2L 2330884 intron,intron CG9967 -,eys + chr2L 2330934 intron,intron CG9967 -,eys + chr2L 2330984 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-563 42 chr2L 2334183 2334215 chr2L 2334333 2334367 12 150 7.0 1.0 4.0 2.4 184 chr2L 2334183 intron,intron CG9967 -,eys + chr2L 2334275 intron,intron CG9967 -,eys + chr2L 2334367 intron,intron CG9967 -,eys + chr2L_12_2330001 chr2L_2330001 RAL-563 43 chr2L 2372364 2372402 chr2L 2372450 2372482 7 84 0.0 1.0 0.5 4.7 118 chr2L 2372364 intergenic CG3609 - chr2L 2372423 intergenic CG3609 - chr2L 2372482 3` UTR CG3609 - chr2L_7_2370001 chr2L_2370001 RAL-563 44 chr2L 2547958 2547991 chr2L 2549166 2549199 5 1210 14.0 25.5 19.8 0.2 1241 chr2L 2547958 intergenic not near genes chr2L 2548578 intergenic not near genes chr2L 2549199 intergenic not near genes chr2L_5_2545001 chr2L_2545001 RAL-563 45 chr2L 2556755 2556782 chr2L 2556971 2556990 6 213 13.0 14.0 13.5 0.4 235 chr2L 2556755 intergenic not near genes chr2L 2556872 intergenic not near genes chr2L 2556990 intergenic not near genes chr2L_6_2555001 chr2L_2555001 RAL-563 46 chr2L 2587820 2587844 chr2L 2587898 2587923 6 78 7.5 11.5 9.5 0.6 103 chr2L 2587820 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587923 intergenic not near genes chr2L_6_2585001 chr2L_2585001 RAL-563 47 chr2L 2637227 2637261 chr2L 2637325 2637359 5 98 13.5 12.5 13.0 0.4 132 chr2L 2637227 intergenic not near genes chr2L 2637293 intergenic not near genes chr2L 2637359 intergenic not near genes chr2L_5_2635001 chr2L_2635001 RAL-563 48 chr2L 2975659 2975673 chr2L 2978964 2978980 5 3306 22.5 17.0 19.8 0.2 3321 chr2L 2975659 exon CG9641 - chr2L 2977320 exon CG3165 + chr2L 2978980 exon CG9643 - chr2L_5_2975001 chr2L_2975001 RAL-563 49 chr2L 3108874 3108897 chr2L 3108951 3108974 9 76 1.5 0.5 1.0 4.5 100 chr2L 3108874 intron toc - chr2L 3108924 intron toc - chr2L 3108974 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-563 50 chr2L 3251501 3251523 chr2L 3259066 3259087 springer 4 7565 1.5 4.0 2.8 1.1 7586 chr2L 3251501 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259087 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-563 51 chr2L 3393537 3393815 chr2L 3393615 3393900 4 83 9.5 5.0 7.2 0.5 363 chr2L 3393537 intergenic not near genes chr2L 3393718 intergenic not near genes chr2L 3393900 intergenic not near genes chr2L_4_3390001 chr2L_3390001 RAL-563 52 chr2L 3395030 3395047 chr2L 3395111 3395129 4 82 2.0 6.5 4.2 0.8 99 chr2L 3395030 intergenic not near genes chr2L 3395080 intergenic not near genes chr2L 3395129 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-563 53 chr2L 3418324 3418356 chr2L 3418446 3418460 8 116 3.0 3.0 3.0 2.0 136 chr2L 3418324 intron pgant2 - chr2L 3418392 intron pgant2 - chr2L 3418460 intron pgant2 - chr2L_8_3415001 chr2L_3415001 RAL-563 54 chr2L 3632268 3632377 chr2L 3632345 3632500 4 112 4.0 7.0 5.5 0.6 232 chr2L 3632268 intron for - chr2L 3632384 intron for - chr2L 3632500 intron for - chr2L_4_3630001 chr2L_3630001 RAL-563 55 chr2L 3931995 3932014 chr2L 3934961 3934981 6 2963 8.5 16.0 12.2 0.5 2986 chr2L 3931995 intron fred - chr2L 3933488 intron fred - chr2L 3934981 intron fred - chr2L_6_3930001 chr2L_3930001 RAL-563 56 chr2L 3960562 3960592 chr2L 3960731 3960762 5 170 3.5 4.5 4.0 1.0 200 chr2L 3960562 intron fred - chr2L 3960662 intron fred - chr2L 3960762 intron fred - chr2L_5_3960001 chr2L_3960001 RAL-563 57 chr2L 4066042 4066062 chr2L 4068863 4068887 Juan 4 2824 0.5 2.5 1.5 1.6 2845 chr2L 4066042 intron ed + chr2L 4067464 intron ed + chr2L 4068887 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-563 58 chr2L 4152252 4152252 chr2L 16217660 16217660 5 12065408 6.0 12.0 9.0 0.5 12065408 chr2L 4152252 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_5_10180001 chr2L_10180001 RAL-563 59 chr2L 4160522 4160532 chr2L 4160933 4160941 5 410 10.0 9.0 9.5 0.5 419 chr2L 4160522 intergenic not near genes chr2L 4160732 intergenic not near genes chr2L 4160941 intergenic not near genes chr2L_5_4160001 chr2L_4160001 RAL-563 60 chr2L 4166376 4166402 chr2L 4166459 4166485 8 82 6.0 7.5 6.8 1.0 109 chr2L 4166376 intergenic Or24a - chr2L 4166430 intergenic Or24a - chr2L 4166485 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-563 61 chr2L 4211085 4211113 chr2L 4212913 4212940 7 1827 9.0 19.0 14.0 0.5 1855 chr2L 4211085 intron ft - chr2L 4212012 intron ft - chr2L 4212940 exon ft - chr2L_7_4210001 chr2L_4210001 RAL-563 62 chr2L 4210759 4210781 chr2L 4213265 4213287 5 2506 11.5 20.0 15.8 0.3 2528 chr2L 4210759 intron ft - chr2L 4212023 intron ft - chr2L 4213287 exon ft - chr2L_5_4210001 chr2L_4210001 RAL-563 63 chr2L 4270458 4270490 chr2L 4270538 4270569 6 78 5.5 9.0 7.2 0.7 111 chr2L 4270458 intergenic not near genes chr2L 4270514 intergenic not near genes chr2L 4270569 intergenic not near genes chr2L_6_4270001 chr2L_4270001 RAL-563 64 chr2L 4293940 4293951 chr2L 4294002 4294042 6 81 11.0 11.0 11.0 0.5 102 chr2L 4293940 intron tutl + chr2L 4293991 intron tutl + chr2L 4294042 intron tutl + chr2L_6_4290001 chr2L_4290001 RAL-563 65 chr2L 4351472 4351495 chr2L 4351548 4351569 7 75 2.0 0.5 1.2 3.2 97 chr2L 4351472 intergenic CR44700 + chr2L 4351520 intergenic CR44700 + chr2L 4351569 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-563 66 chr2L 4601703 4601723 chr2L 4609144 4609164 mdg1 9 7441 2.0 1.0 1.5 3.6 7461 chr2L 4601703 intron dp - chr2L 4605434 intron dp - chr2L 4609164 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-563 67 chr2L 4630671 4630680 chr2L 4630755 4630760 5 84 5.5 9.0 7.2 0.6 89 chr2L 4630671 intergenic not near genes chr2L 4630716 intergenic not near genes chr2L 4630760 intergenic not near genes chr2L_5_4630001 chr2L_4630001 RAL-563 68 chr2L 4917316 4917334 chr2L 4917406 4917424 4 90 9.0 3.5 6.2 0.6 108 chr2L 4917316 intron hoe1 - chr2L 4917370 intron hoe1 - chr2L 4917424 intron hoe1 - chr2L_4_4915001 chr2L_4915001 RAL-563 69 chr2L 4953519 4953544 chr2L 4953760 4953785 pogo 8 240 3.0 0.5 1.8 2.9 266 chr2L 4953519 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953785 intergenic Jon25Bi - chr2L_8_4950001 chr2L_4950001 RAL-563 70 chr2L 5027957 5027993 chr2L 5028041 5028077 4 84 1.5 1.5 1.5 1.6 120 chr2L 5027957 intron vkg - chr2L 5028017 intron vkg - chr2L 5028077 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-563 71 chr2L 5120976 5121003 chr2L 5121070 5121096 5 93 4.0 1.0 2.5 1.4 120 chr2L 5120976 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121096 intron Msp300 + chr2L_5_5120001 chr2L_5120001 RAL-563 72 chr2L 5242868 5242901 chr2L 5243055 5243091 14 188 12.0 14.5 13.2 1.0 223 chr2L 5242868 intron tkv - chr2L 5242980 intron tkv - chr2L 5243091 intron tkv - chr2L_14_5240001 chr2L_5240001 RAL-563 73 chr2L 5438842 5438864 chr2L 5439351 5439362 4 504 6.0 13.5 9.8 0.4 520 chr2L 5438842 intron CR31647 - chr2L 5439102 intron CR31647 - chr2L 5439362 intergenic CR31647 - chr2L_4_5435001 chr2L_5435001 RAL-563 74 chr2L 5500058 5500077 chr2L 5500144 5500162 4 86 2.5 8.5 5.5 0.6 104 chr2L 5500058 intergenic not near genes chr2L 5500110 intergenic not near genes chr2L 5500162 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-563 75 chr2L 4343682 4343682 chr2L 5584263 5584268 4 1240584 16.0 9.0 12.5 0.3 1240586 chr2L 4343682 exon Atet + chr2L 4963975 intron,3` UTR CG34124 +,CR43824 - chr2L 5584268 intergenic not near genes chr2L_4_4960001 chr2L_4960001 RAL-563 76 chr2L 5633520 5633548 chr2L 5633604 5633631 5 83 10.5 12.0 11.2 0.4 111 chr2L 5633520 intron CG31646 - chr2L 5633576 intron CG31646 - chr2L 5633631 intron CG31646 - chr2L_5_5630001 chr2L_5630001 RAL-563 77 chr2L 5749903 5749905 chr2L 5749975 5749983 4 75 6.5 1.5 4.0 0.8 80 chr2L 5749903 intron CG11030 + chr2L 5749943 intron CG11030 + chr2L 5749983 intron CG11030 + chr2L_4_5745001 chr2L_5745001 RAL-563 78 chr2L 5780905 5780929 chr2L 5781010 5781033 7 103 10.5 6.0 8.2 0.8 128 chr2L 5780905 intron CG9171 - chr2L 5780969 intron CG9171 - chr2L 5781033 intron CG9171 - chr2L_7_5780001 chr2L_5780001 RAL-563 79 chr2L 5839091 5839122 chr2L 5839171 5839201 11 79 10.5 8.5 9.5 1.0 110 chr2L 5839091 intron TrissinR + chr2L 5839146 intron TrissinR + chr2L 5839201 intron TrissinR + chr2L_11_5835001 chr2L_5835001 RAL-563 80 chr2L 5897602 5897607 chr2L 5897721 5897728 5 120 8.0 13.5 10.8 0.4 126 chr2L 5897602 intergenic not near genes chr2L 5897665 intergenic not near genes chr2L 5897728 intergenic not near genes chr2L_5_5895001 chr2L_5895001 RAL-563 81 chr2L 6021634 6021641 chr2L 6021696 6021719 4 73 4.0 1.5 2.8 1.1 85 chr2L 6021634 exon CG13996 + chr2L 6021676 3` UTR CG13996 + chr2L 6021719 intergenic CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-563 82 chr2L 6025326 6025345 chr2L 6025658 6025677 4 332 8.0 7.0 7.5 0.5 351 chr2L 6025326 intergenic not near genes chr2L 6025502 intergenic CG9109 - chr2L 6025677 intergenic CG9109 - chr2L_4_6025001 chr2L_6025001 RAL-563 83 chr2L 6363148 6363183 chr2L 6366070 6366105 Burdock 18 2921 1.5 1.5 1.5 7.2 2957 chr2L 6363148 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366105 intergenic not near genes chr2L_18_6360001 chr2L_6360001 RAL-563 84 chr2L 6426866 6426882 chr2L 6445126 6445142 roo 6 18260 4.0 6.5 5.2 1.0 18276 chr2L 6426866 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445142 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-563 85 chr2L 6538568 6538596 chr2L 6538648 6538670 4 79 11.5 13.0 12.2 0.3 102 chr2L 6538568 intron eya - chr2L 6538619 intron eya - chr2L 6538670 intron eya - chr2L_4_6535001 chr2L_6535001 RAL-563 86 chr2L 6544374 6544389 chr2L 6544463 6544481 5 91 9.5 1.5 5.5 0.8 107 chr2L 6544374 intron eya - chr2L 6544428 intron eya - chr2L 6544481 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-563 87 chr2L 6585162 6585168 chr2L 6585220 6585253 5 79 15.0 14.0 14.5 0.3 91 chr2L 6585162 intron CG11319 - chr2L 6585208 intron CG11319 - chr2L 6585253 intron CG11319 - chr2L_5_6585001 chr2L_6585001 RAL-563 88 chr2L 6590097 6590125 chr2L 6590175 6590203 8 78 2.0 3.0 2.5 2.3 106 chr2L 6590097 intron CG11319 - chr2L 6590150 intron CG11319 - chr2L 6590203 intron CG11319 - chr2L_8_6590001 chr2L_6590001 RAL-563 89 chr2L 6653880 6653902 chr2L 6657636 6657646 5 3747 15.0 12.0 13.5 0.3 3766 chr2L 6653880 exon Tango1 + chr2L 6655763 exon CG31633 - chr2L 6657646 exon CG31636 - chr2L_5_6655001 chr2L_6655001 RAL-563 90 chr2L 6800027 6800125 chr2L 6799937 6800224 7 94 9.5 3.5 6.5 0.9 197 chr2L 6800027 3` UTR CG17376 - chr2L 6800126 intron CG17376 - chr2L 6800224 intron CG17376 - chr2L_7_6800001 chr2L_6800001 RAL-563 91 chr2L 6833051 6833159 chr2L 7660520 7660567 4 827458 19.5 20.5 20.0 0.2 827516 chr2L 6833051 exon sens-2 + chr2L 7246809 intron Ndae1 - chr2L 7660567 intron Slob - chr2L_4_7245001 chr2L_7245001 RAL-563 92 chr2L 6850412 6850416 chr2L 6850518 6850522 4 106 3.5 8.0 5.8 0.6 110 chr2L 6850412 intergenic not near genes chr2L 6850467 intergenic not near genes chr2L 6850522 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-563 93 chr2L 6883747 6883768 chr2L 6883833 6883853 6 86 7.0 10.5 8.8 0.6 106 chr2L 6883747 intron Nlg2 + chr2L 6883800 intron Nlg2 + chr2L 6883853 intron Nlg2 + chr2L_6_6880001 chr2L_6880001 RAL-563 94 chr2L 6950163 6950190 chr2L 6950368 6950395 4 204 7.0 1.5 4.2 0.8 232 chr2L 6950163 5` UTR Gas41 - chr2L 6950279 intergenic Gas41 -,SA + chr2L 6950395 intergenic SA +,Gas41 - chr2L_4_6950001 chr2L_6950001 RAL-563 95 chr2L 7100980 7101010 chr2L 7101206 7101236 4 226 4.5 11.0 7.8 0.5 256 chr2L 7100980 intron Pvf3 - chr2L 7101108 intron Pvf3 - chr2L 7101236 intron Pvf3 - chr2L_4_7100001 chr2L_7100001 RAL-563 96 chr2L 7107573 7107605 chr2L 7107662 7107686 5 88 1.0 3.5 2.2 1.6 113 chr2L 7107573 intron Pvf3 - chr2L 7107630 intron Pvf3 - chr2L 7107686 intron Pvf3 - chr2L_5_7105001 chr2L_7105001 RAL-563 97 chr2L 7183277 7183307 chr2L 7183359 7183389 4 82 14.0 7.0 10.5 0.3 112 chr2L 7183277 intron CG4495 + chr2L 7183333 intron CG4495 + chr2L 7183389 intron CG4495 + chr2L_4_7180001 chr2L_7180001 RAL-563 98 chr2L 7343323 7343359 chr2L 7350439 7350474 roo 14 7116 4.0 3.0 3.5 3.1 7151 chr2L 7343323 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_14_7345001 chr2L_7345001 RAL-563 99 chr2L 7432230 7432251 chr2L 7432312 7432332 4 82 2.0 3.0 2.5 1.1 102 chr2L 7432230 intron CG5958 - chr2L 7432281 intron CG5958 - chr2L 7432332 intron CG5958 - chr2L_4_7430001 chr2L_7430001 RAL-563 100 chr2L 7798876 7799174 chr2L 7799026 7799252 4 96 14.0 7.0 10.5 0.3 376 chr2L 7798876 intron Herp - chr2L 7799064 intron Herp - chr2L 7799252 intron Herp - chr2L_4_7795001 chr2L_7795001 RAL-563 101 chr2L 7829505 7829519 chr2L 7829596 7829614 4 92 1.0 1.0 1.0 2.0 109 chr2L 7829505 intron mts + chr2L 7829560 intron mts + chr2L 7829614 intron mts + chr2L_4_7825001 chr2L_7825001 RAL-563 102 chr2L 7922749 7922764 chr2L 7922830 7922845 4 80 1.5 1.5 1.5 1.6 96 chr2L 7922749 intron Snoo - chr2L 7922797 intron Snoo - chr2L 7922845 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-563 103 chr2L 7959041 7959068 chr2L 7960452 7960479 pogo 10 1411 0.0 2.0 1.0 5.0 1438 chr2L 7959041 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960479 intron Snoo - chr2L_10_7955001 chr2L_7955001 RAL-563 104 chr2L 7977089 7977110 chr2L 7984064 7984084 297 9 6974 1.0 2.5 1.8 3.2 6995 chr2L 7977089 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_9_7980001 chr2L_7980001 RAL-563 105 chr2L 8044104 8044125 chr2L 8044182 8044203 5 78 1.0 2.5 1.8 1.8 99 chr2L 8044104 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044203 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-563 106 chr2L 8166052 8166067 chr2L 8166142 8166157 5 89 5.0 7.5 6.2 0.7 105 chr2L 8166052 intron Piezo + chr2L 8166104 intron Piezo + chr2L 8166157 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-563 107 chr2L 8336935 8336944 chr2L 8337014 8337023 5 79 0.0 1.0 0.5 3.3 88 chr2L 8336935 intergenic not near genes chr2L 8336979 intergenic not near genes chr2L 8337023 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-563 108 chr2L 8502675 8502687 chr2L 8502759 8502771 5 83 9.5 8.0 8.8 0.5 96 chr2L 8502675 intron Dh31 - chr2L 8502723 intron Dh31 - chr2L 8502771 intron Dh31 - chr2L_5_8500001 chr2L_8500001 RAL-563 109 chr2L 8603025 8603036 chr2L 8603187 8603198 4 162 9.0 8.0 8.5 0.4 173 chr2L 8603025 intron Sema-1a + chr2L 8603112 intron Sema-1a + chr2L 8603198 intron Sema-1a + chr2L_4_8600001 chr2L_8600001 RAL-563 110 chr2L 8723115 8723141 chr2L 8731492 8731518 Tirant 4 8377 1.0 2.5 1.8 1.4 8403 chr2L 8723115 intron raw - chr2L 8727316 intron raw - chr2L 8731518 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-563 111 chr2L 9000287 9000294 chr2L 9007797 9007804 roo 4 7510 5.0 1.0 3.0 1.0 7517 chr2L 9000287 intergenic Try29F + chr2L 9004046 intergenic not near genes chr2L 9007804 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-563 112 chr2L 9084339 9084340 chr2L 16217660 16217660 12 7133320 12.0 12.0 12.0 0.9 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-563 113 chr2L 9202054 9202087 chr2L 9202130 9202161 14 74 0.5 2.0 1.2 6.4 107 chr2L 9202054 intron tai + chr2L 9202108 intron tai + chr2L 9202161 intron tai + chr2L_14_9200001 chr2L_9200001 RAL-563 114 chr2L 9264347 9264376 chr2L 9264447 9264476 4 100 3.5 1.5 2.5 1.1 129 chr2L 9264347 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264476 intron Ggamma30A + chr2L_4_9260001 chr2L_9260001 RAL-563 115 chr2L 9270739 9270767 chr2L 9270834 9270861 4 94 14.0 12.5 13.2 0.3 122 chr2L 9270739 intron Ggamma30A + chr2L 9270800 intron Ggamma30A + chr2L 9270861 intron Ggamma30A + chr2L_4_9270001 chr2L_9270001 RAL-563 116 chr2L 9286954 9286990 chr2L 9287032 9287068 11 78 3.0 4.5 3.8 2.3 114 chr2L 9286954 intron Ggamma30A + chr2L 9287011 intron Ggamma30A + chr2L 9287068 intron Ggamma30A + chr2L_11_9285001 chr2L_9285001 RAL-563 117 chr2L 9297379 9297392 chr2L 9297455 9297468 4 76 3.0 2.5 2.8 1.1 89 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297424 3` UTR Ggamma30A + chr2L 9297468 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-563 118 chr2L 9303479 9303495 chr2L 9303556 9303572 4 77 2.0 5.0 3.5 0.9 93 chr2L 9303479 intergenic not near genes chr2L 9303526 intergenic not near genes chr2L 9303572 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-563 119 chr2L 9456954 9456961 chr2L 9457034 9457042 4 81 7.5 12.0 9.8 0.4 88 chr2L 9456954 intron numb + chr2L 9456998 intron numb + chr2L 9457042 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-563 120 chr2L 9488074 9488099 chr2L 9488161 9488184 6 86 5.0 0.0 2.5 1.7 110 chr2L 9488074 intergenic not near genes chr2L 9488129 intergenic not near genes chr2L 9488184 intergenic not near genes chr2L_6_9485001 chr2L_9485001 RAL-563 121 chr2L 9509817 9509841 chr2L 9509898 9509922 4 81 7.5 6.0 6.8 0.5 105 chr2L 9509817 intron CG33298 + chr2L 9509870 intron CG33298 + chr2L 9509922 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-563 122 chr2L 9610119 9610143 chr2L 9610198 9610219 5 78 14.0 17.0 15.5 0.3 100 chr2L 9610119 intron gcm2 + chr2L 9610169 intron gcm2 + chr2L 9610219 intron gcm2 + chr2L_5_9610001 chr2L_9610001 RAL-563 123 chr2L 9673817 9673840 chr2L 9673916 9673939 6 99 3.5 2.5 3.0 1.5 122 chr2L 9673817 intergenic not near genes chr2L 9673878 intergenic not near genes chr2L 9673939 intergenic not near genes chr2L_6_9670001 chr2L_9670001 RAL-563 124 chr2L 9686345 9686368 chr2L 9686429 9686449 5 81 9.5 8.5 9.0 0.5 104 chr2L 9686345 intron Pka-C1 - chr2L 9686397 intron Pka-C1 - chr2L 9686449 intron Pka-C1 - chr2L_5_9685001 chr2L_9685001 RAL-563 125 chr2L 9817205 9817242 chr2L 9817296 9817304 12 84 10.0 11.0 10.5 1.0 99 chr2L 9817205 intron nAChRalpha6 - chr2L 9817254 intron nAChRalpha6 - chr2L 9817304 intron nAChRalpha6 - chr2L_12_9815001 chr2L_9815001 RAL-563 126 chr2L 9892502 9892533 chr2L 9892578 9892609 6 76 2.0 1.0 1.5 2.4 107 chr2L 9892502 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892609 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-563 127 chr2L 9973741 9973758 chr2L 9980851 9980877 HMS-Beagle 11 7117 1.0 8.0 4.5 2.0 7136 chr2L 9973741 intergenic not near genes chr2L 9977309 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_11_9975001 chr2L_9975001 RAL-563 128 chr2L 9986349 9986383 chr2L 9986444 9986477 9 94 4.5 7.0 5.8 1.3 128 chr2L 9986349 intron bib + chr2L 9986413 intron bib + chr2L 9986477 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-563 129 chr2L 10051744 10051752 chr2L 10051829 10051837 4 84 4.0 4.5 4.2 0.8 93 chr2L 10051744 5` UTR CR44874 + chr2L 10051790 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-563 130 chr2L 10129177 10129184 chr2L 10129270 10129278 4 93 0.5 3.5 2.0 1.3 101 chr2L 10129177 intron CG44153 - chr2L 10129228 intron CG44153 - chr2L 10129278 intron CG44153 - chr2L_4_10125001 chr2L_10125001 RAL-563 131 chr2L 10153202 10153231 chr2L 10153281 10153289 5 73 10.0 13.0 11.5 0.4 87 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153246 intron,intron CG44153 -,CG4839 + chr2L 10153289 intron,intron CG44153 -,CG4839 + chr2L_5_10150001 chr2L_10150001 RAL-563 132 chr2L 10156334 10156355 chr2L 10163802 10163824 blood 5 7468 2.0 4.0 3.0 1.2 7490 chr2L 10156334 intron,3` UTR CG44153 -,CG4839 + chr2L 10160079 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-563 133 chr2L 10580793 10580822 chr2L 10580874 10580903 4 81 4.0 4.0 4.0 0.8 110 chr2L 10580793 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580903 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-563 134 chr2L 10634753 10634781 chr2L 10634832 10634861 4 76 2.5 0.5 1.5 1.6 108 chr2L 10634753 intron CG7329 - chr2L 10634807 intron CG7329 - chr2L 10634861 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-563 135 chr2L 10704920 10704929 chr2L 10705015 10705024 5 95 5.0 8.0 6.5 0.7 104 chr2L 10704920 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705024 intron Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-563 136 chr2L 10705465 10705477 chr2L 10705531 10705560 5 71 8.0 10.5 9.2 0.5 95 chr2L 10705465 exon Lip2 - chr2L 10705512 intron Lip2 - chr2L 10705560 intron Lip2 - chr2L_5_10705001 chr2L_10705001 RAL-563 137 chr2L 10862845 10862867 chr2L 10864459 10864481 Rt1c 7 1614 3.0 5.5 4.2 1.3 1636 chr2L 10862845 3` UTR CR43807 - chr2L 10863663 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-563 138 chr2L 10946955 10946977 chr2L 10956170 10956192 roo 9 9214 0.5 6.0 3.2 2.1 9237 chr2L 10946955 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-563 139 chr2L 11248569 11248587 chr2L 11248652 11248670 6 83 6.5 5.5 6.0 0.9 101 chr2L 11248569 intron ab + chr2L 11248620 intron ab + chr2L 11248670 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-563 140 chr2L 11418658 11418673 chr2L 11418736 11418752 5 79 8.5 11.5 10.0 0.5 94 chr2L 11418658 intergenic not near genes chr2L 11418705 intergenic not near genes chr2L 11418752 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-563 141 chr2L 11455573 11455586 chr2L 11455651 11455671 4 83 9.0 6.5 7.8 0.5 98 chr2L 11455573 intergenic not near genes chr2L 11455622 intergenic not near genes chr2L 11455671 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-563 142 chr2L 11563646 11563666 chr2L 11568850 11568870 copia 7 5204 2.5 2.0 2.2 2.2 5224 chr2L 11563646 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-563 143 chr2L 11710503 11710532 chr2L 11710586 11710599 5 68 15.0 11.0 13.0 0.4 96 chr2L 11710503 intergenic not near genes chr2L 11710551 intergenic not near genes chr2L 11710599 intergenic not near genes chr2L_5_11710001 chr2L_11710001 RAL-563 144 chr2L 11713513 11713537 chr2L 11720980 11721005 blood 6 7468 1.5 2.0 1.8 2.1 7492 chr2L 11713513 intergenic not near genes chr2L 11717259 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-563 145 chr2L 11821468 11821478 chr2L 11821568 11821578 5 99 8.0 7.0 7.5 0.6 110 chr2L 11821468 intron Pde1c - chr2L 11821523 intron Pde1c - chr2L 11821578 intron Pde1c - chr2L_5_11820001 chr2L_11820001 RAL-563 146 chr2L 11828445 11828454 chr2L 11828520 11828530 4 76 1.0 1.0 1.0 2.0 85 chr2L 11828445 intron,intron Pde1c -,esc - chr2L 11828488 intron,intron Pde1c -,esc - chr2L 11828530 intron,intron Pde1c -,esc - chr2L_4_11825001 chr2L_11825001 RAL-563 147 chr2L 11892542 11892820 chr2L 11892636 11892903 10 89 14.0 0.5 7.2 1.2 361 chr2L 11892542 intron Pde1c - chr2L 11892722 intron Pde1c - chr2L 11892903 intron Pde1c - chr2L_10_11890001 chr2L_11890001 RAL-563 148 chr2L 12067328 12067359 chr2L 12074380 12074411 297 4 7052 2.0 0.0 1.0 2.0 7083 chr2L 12067328 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-563 149 chr2L 12345410 12345420 chr2L 12345485 12345498 5 77 4.0 7.0 5.5 0.8 88 chr2L 12345410 intron bru-2 + chr2L 12345454 intron bru-2 + chr2L 12345498 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-563 150 chr2L 12420979 12420990 chr2L 12421309 12421321 4 331 8.0 3.0 5.5 0.6 342 chr2L 12420979 intron vir-1 - chr2L 12421150 intron vir-1 - chr2L 12421321 intron vir-1 - chr2L_4_12420001 chr2L_12420001 RAL-563 151 chr2L 12487888 12487906 chr2L 12487969 12487987 5 81 4.0 3.0 3.5 1.1 99 chr2L 12487888 intron bun - chr2L 12487938 intron bun - chr2L 12487987 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-563 152 chr2L 12558328 12558353 chr2L 12565457 12565482 HMS-Beagle 4 7129 1.0 2.5 1.8 1.4 7154 chr2L 12558328 intergenic not near genes chr2L 12561905 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-563 153 chr2L 12653061 12653063 chr2L 12653138 12653140 4 77 5.0 15.0 10.0 0.4 79 chr2L 12653061 intergenic not near genes chr2L 12653100 intergenic not near genes chr2L 12653140 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-563 154 chr2L 12693841 12693868 chr2L 12693918 12693945 10 77 5.0 0.0 2.5 2.9 104 chr2L 12693841 exon CG6153 + chr2L 12693893 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693945 3` UTR CG5780 - chr2L_10_12690001 chr2L_12690001 RAL-563 155 chr2L 12728935 12728946 chr2L 12729175 12729187 pogo 4 240 1.5 6.0 3.8 0.8 252 chr2L 12728935 intron MRP + chr2L 12729061 intron MRP + chr2L 12729187 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-563 156 chr2L 12751318 12751341 chr2L 12751401 12751424 5 83 6.5 9.0 7.8 0.6 106 chr2L 12751318 intergenic not near genes chr2L 12751371 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-563 157 chr2L 12828134 12828141 chr2L 12838933 12838949 5 10802 13.5 20.0 16.8 0.3 10815 chr2L 12828134 intergenic not near genes chr2L 12833542 intergenic not near genes chr2L 12838949 intergenic not near genes chr2L_5_12830001 chr2L_12830001 RAL-563 158 chr2L 12861694 12861727 chr2L 12863161 12863179 hobo 14 1465 1.0 4.5 2.8 3.7 1485 chr2L 12861694 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_14_12860001 chr2L_12860001 RAL-563 159 chr2L 12889042 12889062 chr2L 12889125 12889145 6 83 3.5 6.5 5.0 1.0 103 chr2L 12889042 intergenic not near genes chr2L 12889094 intergenic not near genes chr2L 12889145 intergenic not near genes chr2L_6_12885001 chr2L_12885001 RAL-563 160 chr2L 12896811 12896843 chr2L 12896900 12896932 8 81 6.0 8.5 7.2 1.0 121 chr2L 12896811 intergenic not near genes chr2L 12896872 intergenic not near genes chr2L 12896932 intergenic not near genes chr2L_8_12895001 chr2L_12895001 RAL-563 161 chr2L 13093254 13093270 chr2L 13093372 13093384 4 117 3.0 10.0 6.5 0.5 130 chr2L 13093254 intergenic not near genes chr2L 13093319 intergenic not near genes chr2L 13093384 intergenic not near genes chr2L_4_13090001 chr2L_13090001 RAL-563 162 chr2L 13152233 13152252 chr2L 13152311 13152328 4 78 2.5 1.5 2.0 1.3 95 chr2L 13152233 intergenic not near genes chr2L 13152280 intergenic not near genes chr2L 13152328 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-563 163 chr2L 13231881 13231909 chr2L 13231992 13232020 5 111 2.0 1.0 1.5 2.0 139 chr2L 13231881 intergenic Prosalpha6T + chr2L 13231950 intergenic Prosalpha6T + chr2L 13232020 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-563 164 chr2L 13328750 13328781 chr2L 13328845 13328875 5 93 4.0 3.0 3.5 1.1 125 chr2L 13328750 intron CG43778 - chr2L 13328812 intron CG43778 - chr2L 13328875 intron CG43778 - chr2L_5_13325001 chr2L_13325001 RAL-563 165 chr2L 13405646 13405673 chr2L 13410443 13410470 Doc 7 4797 4.0 2.5 3.2 1.7 4824 chr2L 13405646 exon CG7110 + chr2L 13408058 intron CG7110 + chr2L 13410470 intron CG7110 + chr2L_7_13405001 chr2L_13405001 RAL-563 166 chr2L 13481449 13481472 chr2L 13482056 13482079 jockey 5 607 1.5 7.0 4.2 1.0 630 chr2L 13481449 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-563 167 chr2L 13693027 13693041 chr2L 13693100 13693117 5 75 9.0 10.0 9.5 0.5 90 chr2L 13693027 intron CG31814 - chr2L 13693072 intron CG31814 - chr2L 13693117 intron CG31814 - chr2L_5_13690001 chr2L_13690001 RAL-563 168 chr2L 13694695 13694702 chr2L 13694766 13694773 4 70 4.5 8.5 6.5 0.5 78 chr2L 13694695 intron CG31814 - chr2L 13694734 intron CG31814 - chr2L 13694773 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-563 169 chr2L 13699564 13699586 chr2L 13699641 13699663 7 75 1.0 4.0 2.5 2.0 99 chr2L 13699564 intron CG31814 - chr2L 13699614 intron CG31814 - chr2L 13699663 intron CG31814 - chr2L_7_13695001 chr2L_13695001 RAL-563 170 chr2L 13853086 13853113 chr2L 13862234 13862263 roo 5 9149 5.5 1.0 3.2 1.2 9177 chr2L 13853086 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862263 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-563 171 chr2L 14017767 14017795 chr2L 14017858 14017887 4 92 2.0 4.5 3.2 1.0 120 chr2L 14017767 intron bgm + chr2L 14017827 intron bgm + chr2L 14017887 intron bgm + chr2L_4_14015001 chr2L_14015001 RAL-563 172 chr2L 14068618 14068622 chr2L 14068688 14068690 4 71 11.0 6.0 8.5 0.4 72 chr2L 14068618 intron nAChRalpha5 + chr2L 14068654 intron nAChRalpha5 + chr2L 14068690 intron nAChRalpha5 + chr2L_4_14065001 chr2L_14065001 RAL-563 173 chr2L 14378656 14378676 chr2L 14378735 14378755 6 79 0.5 0.5 0.5 4.0 99 chr2L 14378656 3` UTR ppk - chr2L 14378706 3` UTR ppk - chr2L 14378755 3` UTR ppk - chr2L_6_14375001 chr2L_14375001 RAL-563 174 chr2L 14499853 14499886 chr2L 14501190 14501201 4 1327 8.0 0.0 4.0 0.8 1348 chr2L 14499853 intergenic not near genes chr2L 14500527 intergenic not near genes chr2L 14501201 intergenic not near genes chr2L_4_14500001 chr2L_14500001 RAL-563 175 chr2L 14588382 14588414 chr2L 14588536 14588568 5 154 2.5 4.5 3.5 1.1 186 chr2L 14588382 intergenic CG42680 - chr2L 14588475 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-563 176 chr2L 14803887 14803910 chr2L 14809089 14809113 copia 6 5203 2.0 6.0 4.0 1.2 5226 chr2L 14803887 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-563 177 chr2L 14889960 14889972 chr2L 14890385 14890397 jockey 4 425 1.0 5.5 3.2 1.0 437 chr2L 14889960 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890397 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-563 178 chr2L 15000861 15000874 chr2L 15000987 15001000 4 126 8.0 3.5 5.8 0.6 139 chr2L 15000861 intergenic not near genes chr2L 15000930 intergenic not near genes chr2L 15001000 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-563 179 chr2L 15026020 15026040 chr2L 15026101 15026121 4 81 6.0 0.0 3.0 1.0 101 chr2L 15026020 exon GABA-B-R1 + chr2L 15026070 intron GABA-B-R1 + chr2L 15026121 intron GABA-B-R1 + chr2L_4_15025001 chr2L_15025001 RAL-563 180 chr2L 15324592 15324611 chr2L 15324670 15324689 4 78 12.5 16.0 14.2 0.3 97 chr2L 15324592 intergenic not near genes chr2L 15324640 intergenic not near genes chr2L 15324689 intergenic not near genes chr2L_4_15320001 chr2L_15320001 RAL-563 181 chr2L 15347353 15347355 chr2L 15347433 15347435 6 80 7.5 5.5 6.5 0.8 82 chr2L 15347353 intergenic not near genes chr2L 15347394 intergenic not near genes chr2L 15347435 intergenic not near genes chr2L_6_15345001 chr2L_15345001 RAL-563 182 chr2L 15795624 15795647 chr2L 15795798 15795821 5 174 1.0 0.5 0.8 2.8 197 chr2L 15795624 intergenic not near genes chr2L 15795722 intergenic not near genes chr2L 15795821 intergenic not near genes chr2L_5_15795001 chr2L_15795001 RAL-563 183 chr2L 15844537 15844565 chr2L 15844613 15844639 9 76 9.5 9.0 9.2 0.9 102 chr2L 15844537 intergenic not near genes chr2L 15844588 intergenic not near genes chr2L 15844639 intergenic not near genes chr2L_9_15840001 chr2L_15840001 RAL-563 184 chr2L 15915653 15915685 chr2L 15915731 15915760 6 77 9.5 12.0 10.8 0.5 107 chr2L 15915653 intron beat-Ib - chr2L 15915706 intron beat-Ib - chr2L 15915760 intron beat-Ib - chr2L_6_15915001 chr2L_15915001 RAL-563 185 chr2L 15956033 15956058 chr2L 15957500 15957525 hobo 5 1467 1.5 0.0 0.8 2.8 1492 chr2L 15956033 intron beat-Ib - chr2L 15956779 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-563 186 chr2L 15960854 15960859 chr2L 15961175 15961175 4 320 9.5 1.5 5.5 0.6 321 chr2L 15960854 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961014 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961175 intron,5` UTR beat-Ib -,CR43803 + chr2L_4_15960001 chr2L_15960001 RAL-563 187 chr2L 15977963 15977984 chr2L 15978056 15978074 5 89 4.5 3.5 4.0 1.0 111 chr2L 15977963 intergenic not near genes chr2L 15978018 intergenic not near genes chr2L 15978074 intergenic not near genes chr2L_5_15975001 chr2L_15975001 RAL-563 188 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 10.5 12.0 11.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-563 189 chr2L 16141167 16141196 chr2L 16146373 16146403 copia 8 5207 1.5 2.0 1.8 2.9 5236 chr2L 16141167 intergenic not near genes chr2L 16143785 intergenic not near genes chr2L 16146403 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-563 190 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133321 12.0 12.0 12.0 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-563 191 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 10.5 12.0 11.2 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-563 192 chr2L 16280252 16280284 chr2L 16281423 16281454 1360 10 1169 4.0 5.0 4.5 1.8 1202 chr2L 16280252 intron crp - chr2L 16280853 intron crp - chr2L 16281454 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-563 193 chr2L 16694159 16694163 chr2L 16694225 16694249 6 82 10.5 11.0 10.8 0.5 90 chr2L 16694159 intron grp + chr2L 16694204 intron grp + chr2L 16694249 intron grp + chr2L_6_16690001 chr2L_16690001 RAL-563 194 chr2L 16939993 16940009 chr2L 16940071 16940087 6 78 1.0 3.5 2.2 1.9 94 chr2L 16939993 intergenic not near genes chr2L 16940040 intergenic not near genes chr2L 16940087 intergenic not near genes chr2L_6_16940001 chr2L_16940001 RAL-563 195 chr2L 17005412 17005436 chr2L 17005509 17005532 6 96 7.5 7.0 7.2 0.7 120 chr2L 17005412 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005532 intergenic not near genes chr2L_6_17005001 chr2L_17005001 RAL-563 196 chr2L 17056682 17056761 chr2L 17056782 17056841 4 79 1.0 1.0 1.0 2.0 159 chr2L 17056682 intergenic not near genes chr2L 17056762 intergenic not near genes chr2L 17056841 intergenic not near genes chr2L_4_17055001 chr2L_17055001 RAL-563 197 chr2L 17273192 17273199 chr2L 17277975 17277981 F-element 10 4782 8.0 3.0 5.5 1.5 4789 chr2L 17273192 intergenic not near genes chr2L 17275586 intergenic not near genes chr2L 17277981 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-563 198 chr2L 17273201 17273229 chr2L 17277971 17277979 F-element 4 4770 3.0 2.5 2.8 1.1 4778 chr2L 17273201 intergenic not near genes chr2L 17275590 intergenic not near genes chr2L 17277979 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-563 199 chr2L 17327918 17327929 chr2L 17328004 17328015 4 86 2.5 4.0 3.2 1.0 97 chr2L 17327918 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-563 200 chr2L 17595507 17595532 chr2L 17595585 17595610 4 78 1.5 3.0 2.2 1.2 103 chr2L 17595507 intron Sytalpha + chr2L 17595558 intron Sytalpha + chr2L 17595610 intron Sytalpha + chr2L_4_17595001 chr2L_17595001 RAL-563 201 chr2L 17643606 17643617 chr2L 17643815 17643829 4 211 4.0 8.0 6.0 0.6 223 chr2L 17643606 intergenic not near genes chr2L 17643718 intergenic not near genes chr2L 17643829 intergenic not near genes chr2L_4_17640001 chr2L_17640001 RAL-563 202 chr2L 17731249 17731280 chr2L 17731337 17731360 7 86 6.5 4.5 5.5 1.1 111 chr2L 17731249 intron CadN - chr2L 17731304 intron CadN - chr2L 17731360 intron CadN - chr2L_7_17730001 chr2L_17730001 RAL-563 203 chr2L 17805518 17805545 chr2L 17805660 17805687 4 142 5.5 9.5 7.5 0.5 169 chr2L 17805518 intron CadN2 - chr2L 17805602 intron CadN2 - chr2L 17805687 intron CadN2 - chr2L_4_17805001 chr2L_17805001 RAL-563 204 chr2L 17819932 17819951 chr2L 17825134 17825153 copia 4 5202 0.5 3.5 2.0 1.3 5221 chr2L 17819932 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-563 205 chr2L 17880001 17880024 chr2L 17880088 17880110 4 85 11.5 7.0 9.2 0.4 109 chr2L 17880001 intergenic not near genes chr2L 17880056 intergenic not near genes chr2L 17880110 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-563 206 chr2L 17951951 17951968 chr2L 17953417 17953434 hobo 4 1466 1.5 1.0 1.2 1.8 1483 chr2L 17951951 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953434 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-563 207 chr2L 18026980 18027004 chr2L 18027320 18027344 6 340 6.0 5.5 5.8 0.9 364 chr2L 18026980 5` UTR rdo + chr2L 18027162 intron rdo + chr2L 18027344 intron rdo + chr2L_6_18025001 chr2L_18025001 RAL-563 208 chr2L 18078279 18078308 chr2L 18078364 18078393 8 83 7.0 5.0 6.0 1.1 114 chr2L 18078279 5` UTR Arr1 + chr2L 18078336 5` UTR Arr1 + chr2L 18078393 exon Arr1 + chr2L_8_18075001 chr2L_18075001 RAL-563 209 chr2L 18107795 18107810 chr2L 18107879 18107894 7 81 7.5 4.5 6.0 1.0 99 chr2L 18107795 intergenic not near genes chr2L 18107844 intergenic not near genes chr2L 18107894 intergenic not near genes chr2L_7_18105001 chr2L_18105001 RAL-563 210 chr2L 18621823 18621846 chr2L 18622090 18622115 4 268 3.5 11.5 7.5 0.5 292 chr2L 18621823 intron MESR3 + chr2L 18621969 intron MESR3 + chr2L 18622115 intron MESR3 + chr2L_4_18620001 chr2L_18620001 RAL-563 211 chr2L 18654006 18654030 chr2L 18654150 18654172 6 148 11.5 22.0 16.8 0.3 166 chr2L 18654006 intron MESR3 + chr2L 18654089 intron MESR3 + chr2L 18654172 intron MESR3 + chr2L_6_18650001 chr2L_18650001 RAL-563 212 chr2L 18790283 18790319 chr2L 18791106 18791139 13 821 16.5 11.5 14.0 0.9 856 chr2L 18790283 intron ham - chr2L 18790711 intron ham - chr2L 18791139 intron ham - chr2L_13_18790001 chr2L_18790001 RAL-563 213 chr2L 18816748 18816768 chr2L 18816866 18816900 9 130 11.0 6.5 8.8 0.9 152 chr2L 18816748 intergenic not near genes chr2L 18816824 intergenic not near genes chr2L 18816900 intergenic not near genes chr2L_9_18815001 chr2L_18815001 RAL-563 214 chr2L 19121046 19121067 chr2L 19121124 19121145 4 78 3.5 3.0 3.2 1.0 99 chr2L 19121046 intergenic l(2)37Cc - chr2L 19121096 intergenic l(2)37Cc - chr2L 19121145 intergenic l(2)37Cc - chr2L_4_19120001 chr2L_19120001 RAL-563 215 chr2L 19147271 19147288 chr2L 19147386 19147403 4 115 2.5 0.0 1.2 1.8 132 chr2L 19147271 intron brat + chr2L 19147337 intron brat + chr2L 19147403 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-563 216 chr2L 19199668 19199706 chr2L 19199745 19199782 10 76 3.0 6.5 4.8 1.7 114 chr2L 19199668 intron drl + chr2L 19199725 intron drl + chr2L 19199782 intron drl + chr2L_10_19195001 chr2L_19195001 RAL-563 217 chr2L 19345012 19345046 chr2L 19357221 19357254 blood 9 12207 2.5 1.5 2.0 3.0 12242 chr2L 19345012 intron dnt - chr2L 19351133 intron dnt - chr2L 19357254 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-563 218 chr2L 19357546 19357555 chr2L 19357636 19357645 7 90 2.5 4.0 3.2 1.7 99 chr2L 19357546 intron dnt - chr2L 19357596 intron dnt - chr2L 19357645 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-563 219 chr2L 19407726 19407737 chr2L 19407922 19407933 5 197 3.5 3.0 3.2 1.2 207 chr2L 19407726 intron Pax - chr2L 19407830 intron Pax - chr2L 19407933 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-563 220 chr2L 19441399 19441416 chr2L 19446347 19446377 6 4953 13.0 33.5 23.2 0.2 4978 chr2L 19441399 intron CG10237 - chr2L 19443888 intron,intron RanGAP +,Hs2st - chr2L 19446377 exon RanGAP + chr2L_6_19440001 chr2L_19440001 RAL-563 221 chr2L 19544609 19544619 chr2L 19544666 19544687 4 69 7.0 6.5 6.8 0.5 78 chr2L 19544609 exon ref(2)P + chr2L 19544648 exon ref(2)P + chr2L 19544687 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-563 222 chr2L 19562558 19562560 chr2L 19562628 19562640 5 75 6.0 12.5 9.2 0.5 82 chr2L 19562558 intron Tep5 + chr2L 19562599 intron Tep5 + chr2L 19562640 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-563 223 chr2L 19597276 19597285 chr2L 19597508 19597518 4 233 16.0 4.0 10.0 0.4 242 chr2L 19597276 intron Lar + chr2L 19597397 intron Lar + chr2L 19597518 intron Lar + chr2L_4_19595001 chr2L_19595001 RAL-563 224 chr2L 19620094 19620130 chr2L 19621080 19621107 jockey 7 978 1.0 7.5 4.2 1.3 1013 chr2L 19620094 intron Lar + chr2L 19620600 intron Lar + chr2L 19621107 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-563 225 chr2L 19638534 19638572 chr2L 19638621 19638660 10 86 5.5 2.5 4.0 2.0 126 chr2L 19638534 intron Lar + chr2L 19638597 intron Lar + chr2L 19638660 intron Lar + chr2L_10_19635001 chr2L_19635001 RAL-563 226 chr2L 19703536 19703557 chr2L 19712672 19712693 roo 5 9133 5.0 3.5 4.2 1.0 9157 chr2L 19703536 intron Lar + chr2L 19708114 intron Lar + chr2L 19712693 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-563 227 chr2L 19773163 19773185 chr2L 19773249 19773272 10 87 3.5 4.5 4.0 2.0 109 chr2L 19773163 intergenic not near genes chr2L 19773218 intergenic not near genes chr2L 19773272 intergenic not near genes chr2L_10_19770001 chr2L_19770001 RAL-563 228 chr2L 19794024 19794041 chr2L 19794108 19794125 5 84 2.0 4.5 3.2 1.2 101 chr2L 19794024 intron fs(2)ltoPP43 - chr2L 19794074 intron fs(2)ltoPP43 - chr2L 19794125 intron fs(2)ltoPP43 - chr2L_5_19790001 chr2L_19790001 RAL-563 229 chr2L 19837278 19837300 chr2L 19837358 19837380 9 80 5.0 7.0 6.0 1.3 102 chr2L 19837278 intron sick + chr2L 19837329 intron sick + chr2L 19837380 intron sick + chr2L_9_19835001 chr2L_19835001 RAL-563 230 chr2L 19972944 19972961 chr2L 19973031 19973049 4 88 10.0 12.5 11.2 0.3 105 chr2L 19972944 intron CG43861 - chr2L 19972996 intron CG43861 - chr2L 19973049 intron CG43861 - chr2L_4_19970001 chr2L_19970001 RAL-563 231 chr2L 19994644 19994687 chr2L 19994733 19994767 7 69 1.5 6.0 3.8 1.5 123 chr2L 19994644 intron CG43861 - chr2L 19994706 intron CG43861 - chr2L 19994767 intron CG43861 - chr2L_7_19990001 chr2L_19990001 RAL-563 232 chr2L 20041431 20041458 chr2L 20041514 20041543 6 84 13.0 12.0 12.5 0.4 112 chr2L 20041431 intron sNPF + chr2L 20041487 intron sNPF + chr2L 20041543 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-563 233 chr2L 20083856 20083876 chr2L 20083932 20083952 6 73 5.0 4.0 4.5 1.1 96 chr2L 20083856 intron,intron neb +,fok - chr2L 20083904 intron,intron neb +,fok - chr2L 20083952 intron,intron neb +,fok - chr2L_6_20080001 chr2L_20080001 RAL-563 234 chr2L 20296508 20296541 chr2L 20296589 20296622 5 81 0.0 2.5 1.2 2.3 114 chr2L 20296508 intergenic CR43414 - chr2L 20296565 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-563 235 chr2L 20299415 20299444 chr2L 20299536 20299560 7 121 13.0 9.5 11.2 0.6 145 chr2L 20299415 intergenic not near genes chr2L 20299488 intergenic not near genes chr2L 20299560 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-563 236 chr2L 20303186 20303188 chr2L 20310651 20310656 blood 4 7467 0.5 1.0 0.8 2.2 7470 chr2L 20303186 intergenic not near genes chr2L 20306921 intergenic not near genes chr2L 20310656 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-563 237 chr2L 20498689 20498707 chr2L 20498788 20498806 4 99 3.0 2.5 2.8 1.1 117 chr2L 20498689 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498806 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-563 238 chr2L 20576217 20576251 chr2L 20583685 20583719 blood 6 7468 1.5 0.0 0.8 3.3 7502 chr2L 20576217 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-563 239 chr2L 20602723 20602749 chr2L 20602809 20602837 6 88 0.5 0.5 0.5 4.0 114 chr2L 20602723 intron CR44909 - chr2L 20602780 intron CR44909 - chr2L 20602837 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-563 240 chr2L 20804708 20804717 chr2L 20804793 20804802 4 85 7.5 6.5 7.0 0.5 94 chr2L 20804708 intron CG9328 + chr2L 20804755 intron CG9328 + chr2L 20804802 intron CG9328 + chr2L_4_20800001 chr2L_20800001 RAL-563 241 chr2L 20901480 20901488 chr2L 20902622 20902644 1360 5 1153 1.0 0.5 0.8 2.8 1164 chr2L 20901480 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902644 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-563 242 chr2L 20984602 20984769 chr2L 20984683 20984861 11 82 9.0 8.0 8.5 1.2 259 chr2L 20984602 intron CG42238 - chr2L 20984732 intron CG42238 - chr2L 20984861 intron CG42238 - chr2L_11_20980001 chr2L_20980001 RAL-563 243 chr2L 21020274 21020310 chr2L 21023951 21023987 NOF 7 3676 0.5 2.0 1.2 3.2 3713 chr2L 21020274 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-563 244 chr2L 21041137 21041168 chr2L 21049398 21049429 Tirant 7 8259 2.5 2.0 2.2 2.2 8292 chr2L 21041137 intron CG42238 - chr2L 21045283 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-563 245 chr2L 21119296 21119315 chr2L 21119380 21119399 4 84 0.5 2.0 1.2 1.8 103 chr2L 21119296 intron Nhe2 + chr2L 21119348 intron Nhe2 + chr2L 21119399 intron Nhe2 + chr2L_4_21115001 chr2L_21115001 RAL-563 246 chr2L 21284053 21284082 chr2L 21284526 21284555 9 471 8.0 5.0 6.5 1.2 502 chr2L 21284053 intergenic not near genes chr2L 21284304 intergenic not near genes chr2L 21284555 intergenic not near genes chr2L_9_21280001 chr2L_21280001 RAL-563 247 chr2L 21285638 21285663 chr2L 21285736 21285761 4 97 8.0 10.0 9.0 0.4 123 chr2L 21285638 intergenic Mio - chr2L 21285700 intergenic Mio - chr2L 21285761 intergenic Mio - chr2L_4_21285001 chr2L_21285001 RAL-563 248 chr2L 21286614 21286628 chr2L 21286692 21286706 4 78 1.0 3.0 2.0 1.3 92 chr2L 21286614 exon Mio - chr2L 21286660 intron Mio - chr2L 21286706 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-563 249 chr2L 21739137 21739155 chr2L 21742019 21742037 4 2882 21.0 18.5 19.8 0.2 2900 chr2L 21739137 intergenic not near genes chr2L 21740587 3` UTR step - chr2L 21742037 intron step - chr2L_4_21740001 chr2L_21740001 RAL-563 250 chr2L 21755508 21755523 chr2L 21755632 21755647 6 123 5.5 3.0 4.2 1.2 139 chr2L 21755508 intron step - chr2L 21755578 intron step - chr2L 21755647 intron step - chr2L_6_21755001 chr2L_21755001 RAL-563 251 chr2L 21806228 21806255 chr2L 21806331 21806357 4 103 3.0 2.5 2.8 1.1 129 chr2L 21806228 intergenic not near genes chr2L 21806292 intergenic not near genes chr2L 21806357 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-563 252 chr2L 21886616 21886642 chr2L 21886696 21886720 6 79 6.5 10.5 8.5 0.6 104 chr2L 21886616 intergenic not near genes chr2L 21886668 intergenic not near genes chr2L 21886720 intergenic not near genes chr2L_6_21885001 chr2L_21885001 RAL-563 253 chr2L 21981685 21981708 chr2L 21990850 21990873 roo 9 9165 2.0 5.5 3.8 1.9 9188 chr2L 21981685 exon CG2528 - chr2L 21986279 intron CG2528 - chr2L 21990873 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-563 254 chr2L 22077290 22077319 chr2L 22077371 22077386 4 72 1.0 2.5 1.8 1.4 96 chr2L 22077290 intergenic not near genes chr2L 22077338 intergenic not near genes chr2L 22077386 intergenic not near genes chr2L_4_22075001 chr2L_22075001 RAL-563 255 chr2L 22108513 22108519 chr2L 22108930 22108940 6 420 9.5 9.0 9.2 0.6 427 chr2L 22108513 intergenic CG6675 + chr2L 22108726 intergenic CG6675 + chr2L 22108940 intergenic CG6675 + chr2L_6_22105001 chr2L_22105001 RAL-563 256 chr2L 22258618 22258642 chr2L 22260742 22260766 G6 6 2124 3.5 1.5 2.5 1.7 2148 chr2L 22258618 intergenic Tif-IA + chr2L 22259692 intergenic not near genes chr2L 22260766 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-563 257 chr2L 23181400 23181414 chr2L 23181509 23181522 4 108 1.0 1.0 1.0 2.0 122 chr2L 23181400 intergenic not near genes chr2L 23181461 intergenic not near genes chr2L 23181522 intergenic not near genes chr2L_4_23180001 chr2L_23180001 RAL-563 258 chr2R 529323 529356 chr2R 537948 537975 Max-element 7 8621 0.5 1.5 1.0 3.5 8652 chr2R 529323 intron CG40378 + chr2R 533649 intron CG40378 + chr2R 537975 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-563 259 chr2R 552752 552779 chr2R 553970 553975 1360 4 1203 6.0 6.0 6.0 0.6 1223 chr2R 552752 intron CG40378 + chr2R 553364 intron CG40378 + chr2R 553975 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-563 260 chr2R 910720 910750 chr2R 912249 912279 15 1526 5.0 7.0 6.0 2.1 1559 chr2R 910720 intergenic not near genes chr2R 911500 intergenic not near genes chr2R 912279 intergenic not near genes chr2R_15_910001 chr2R_910001 RAL-563 261 chr2R 4502662 4502672 chr2R 4502891 4502897 5 229 15.5 8.5 12.0 0.4 235 chr2R 4502662 intergenic not near genes chr2R 4502780 intergenic not near genes chr2R 4502897 intergenic not near genes chr2R_5_4500001 chr2R_4500001 RAL-563 262 chr2R 4604556 4604581 chr2R 4604635 4604660 4 79 4.5 4.5 4.5 0.7 104 chr2R 4604556 intron p120ctn + chr2R 4604608 intron p120ctn + chr2R 4604660 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-563 263 chr2R 4622951 4622985 chr2R 4624109 4624144 1360 6 1157 10.5 10.5 10.5 0.5 1193 chr2R 4622951 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-563 264 chr2R 4750340 4750371 chr2R 4751497 4751528 1360 5 1153 5.5 3.5 4.5 0.9 1188 chr2R 4750340 intron conu + chr2R 4750934 intron conu + chr2R 4751528 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-563 265 chr2R 4783250 4783262 chr2R 4783384 4783396 4 134 12.0 13.5 12.8 0.3 146 chr2R 4783250 intergenic not near genes chr2R 4783323 intergenic not near genes chr2R 4783396 intergenic not near genes chr2R_4_4780001 chr2R_4780001 RAL-563 266 chr2R 4942066 4942083 chr2R 4942190 4942207 4 122 0.0 2.0 1.0 2.0 141 chr2R 4942066 intron Ir41a + chr2R 4942136 intron Ir41a + chr2R 4942207 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-563 267 chr2R 5038527 5038537 chr2R 5039323 5039331 4 796 3.5 7.5 5.5 0.6 804 chr2R 5038527 intergenic not near genes chr2R 5038929 intergenic not near genes chr2R 5039331 intergenic not near genes chr2R_4_5035001 chr2R_5035001 RAL-563 268 chr2R 5237351 5237373 chr2R 5237433 5237455 4 82 1.5 0.0 0.8 2.2 104 chr2R 5237351 intron Nipped-A - chr2R 5237403 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-563 269 chr2R 5472366 5472392 chr2R 5472461 5472487 6 92 9.5 11.5 10.5 0.5 121 chr2R 5472366 intron CG30440 - chr2R 5472426 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-563 270 chr2R 5476352 5476381 chr2R 5476896 5476922 5 538 2.0 9.0 5.5 0.8 570 chr2R 5476352 intron CG30440 - chr2R 5476637 intron CG30440 - chr2R 5476922 intron CG30440 - chr2R_5_5475001 chr2R_5475001 RAL-563 271 chr2R 5581408 5581424 chr2R 5627617 5627633 6 46208 1.0 9.0 5.0 1.0 46225 chr2R 5581408 intergenic not near genes chr2R 5604520 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-563 272 chr2R 5655418 5655450 chr2R 5655498 5655530 7 79 5.0 7.0 6.0 1.0 112 chr2R 5655418 exon CG1344 + chr2R 5655474 exon CG1344 + chr2R 5655530 exon CG1344 + chr2R_7_5655001 chr2R_5655001 RAL-563 273 chr2R 5807857 5807877 chr2R 5808044 5808064 4 187 12.0 6.5 9.2 0.4 207 chr2R 5807857 intron dpr12 + chr2R 5807960 intron dpr12 + chr2R 5808064 intron dpr12 + chr2R_4_5805001 chr2R_5805001 RAL-563 274 chr2R 5814088 5814123 chr2R 5814182 5814216 12 93 7.5 8.0 7.8 1.4 128 chr2R 5814088 intron dpr12 + chr2R 5814152 intron dpr12 + chr2R 5814216 intron dpr12 + chr2R_12_5810001 chr2R_5810001 RAL-563 275 chr2R 5833056 5833086 chr2R 5833135 5833162 4 77 5.0 7.0 6.0 0.6 106 chr2R 5833056 intron dpr12 + chr2R 5833109 intron dpr12 + chr2R 5833162 intron dpr12 + chr2R_4_5830001 chr2R_5830001 RAL-563 276 chr2R 5861310 5861313 chr2R 5861410 5861434 4 116 7.5 9.0 8.2 0.4 124 chr2R 5861310 intergenic dpr12 + chr2R 5861372 intergenic not near genes chr2R 5861434 intergenic not near genes chr2R_4_5860001 chr2R_5860001 RAL-563 277 chr2R 5869281 5869307 chr2R 5874357 5874383 flea 5 5076 1.5 3.0 2.2 1.6 5102 chr2R 5869281 intergenic not near genes chr2R 5871832 intergenic not near genes chr2R 5874383 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-563 278 chr2R 5876872 5876896 chr2R 5876974 5876997 4 102 14.5 13.0 13.8 0.3 125 chr2R 5876872 intergenic not near genes chr2R 5876934 intergenic not near genes chr2R 5876997 intergenic not near genes chr2R_4_5875001 chr2R_5875001 RAL-563 279 chr2R 5897011 5897035 chr2R 5897097 5897121 9 85 9.0 10.0 9.5 0.9 110 chr2R 5897011 intron CG43366 + chr2R 5897066 intron CG43366 + chr2R 5897121 intron CG43366 + chr2R_9_5895001 chr2R_5895001 RAL-563 280 chr2R 5942142 5942167 chr2R 5942219 5942237 4 75 11.5 14.5 13.0 0.3 95 chr2R 5942142 intergenic not near genes chr2R 5942190 intergenic not near genes chr2R 5942237 intergenic not near genes chr2R_4_5940001 chr2R_5940001 RAL-563 281 chr2R 6033440 6033471 chr2R 6033525 6033556 4 85 6.0 2.5 4.2 0.8 116 chr2R 6033440 intron SCAP - chr2R 6033498 intron SCAP - chr2R 6033556 intron SCAP - chr2R_4_6030001 chr2R_6030001 RAL-563 282 chr2R 6065761 6065782 chr2R 6065872 6065892 5 110 1.0 7.0 4.0 1.0 131 chr2R 6065761 intron CCHa2-R + chr2R 6065826 intron CCHa2-R + chr2R 6065892 exon CCHa2-R + chr2R_5_6065001 chr2R_6065001 RAL-563 283 chr2R 6096728 6096749 chr2R 6101913 6101940 BS 7 5193 3.5 3.0 3.2 1.7 5212 chr2R 6096728 intron EcR - chr2R 6099334 intron EcR - chr2R 6101940 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-563 284 chr2R 6494529 6494549 chr2R 6499290 6499311 F-element 5 4762 4.0 0.5 2.2 1.6 4782 chr2R 6494529 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499311 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-563 285 chr2R 6518074 6518105 chr2R 6518158 6518190 7 84 6.0 6.0 6.0 1.0 116 chr2R 6518074 intron jing + chr2R 6518132 intron jing + chr2R 6518190 intron jing + chr2R_7_6515001 chr2R_6515001 RAL-563 286 chr2R 6539826 6539855 chr2R 6539949 6539977 4 123 4.5 7.5 6.0 0.6 151 chr2R 6539826 intron jing + chr2R 6539902 intron jing + chr2R 6539977 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-563 287 chr2R 6712587 6712599 chr2R 6712684 6712693 7 96 6.0 3.5 4.8 1.2 106 chr2R 6712587 intron,intron CG3409 -,CG45092 - chr2R 6712640 intron,intron CG3409 -,CG45092 - chr2R 6712693 intron,intron CG3409 -,CG45092 - chr2R_7_6710001 chr2R_6710001 RAL-563 288 chr2R 6876223 6876251 chr2R 6876305 6876328 9 81 2.0 4.0 3.0 2.2 105 chr2R 6876223 intron,intron CR44169 +,Spn42Da - chr2R 6876276 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876328 5` UTR,intron CR44169 +,Spn42Da - chr2R_9_6875001 chr2R_6875001 RAL-563 289 chr2R 6978638 6978650 chr2R 6978821 6978833 6 182 5.5 5.5 5.5 0.9 195 chr2R 6978638 intron vimar - chr2R 6978736 intron vimar - chr2R 6978833 intron vimar - chr2R_6_6975001 chr2R_6975001 RAL-563 290 chr2R 7025903 7025926 chr2R 7025990 7026015 6 86 4.5 5.0 4.8 1.0 112 chr2R 7025903 intron Tsp42Ef + chr2R 7025959 intron Tsp42Ef + chr2R 7026015 intron Tsp42Ef + chr2R_6_7025001 chr2R_7025001 RAL-563 291 chr2R 7166941 7166965 chr2R 7167020 7167043 4 78 2.0 2.5 2.2 1.2 102 chr2R 7166941 intron pk + chr2R 7166992 intron pk + chr2R 7167043 intron pk + chr2R_4_7165001 chr2R_7165001 RAL-563 292 chr2R 7235820 7235848 chr2R 7240912 7240940 jockey 12 5091 5.5 2.0 3.8 2.5 5120 chr2R 7235820 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240940 intergenic not near genes chr2R_12_7235001 chr2R_7235001 RAL-563 293 chr2R 7254806 7254825 chr2R 7254921 7254921 4 110 9.5 20.5 15.0 0.2 115 chr2R 7254806 5` UTR CR45280 + chr2R 7254864 5` UTR CR45280 + chr2R 7254921 5` UTR CR45280 + chr2R_4_7250001 chr2R_7250001 RAL-563 294 chr2R 7692031 7692037 chr2R 7692112 7692118 4 81 2.0 1.5 1.8 1.4 87 chr2R 7692031 intron CG1399 - chr2R 7692074 intron CG1399 - chr2R 7692118 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-563 295 chr2R 7815674 7815687 chr2R 7822143 7822156 Burdock 10 6467 2.0 2.0 2.0 3.3 6482 chr2R 7815674 intergenic CG1882 + chr2R 7818915 intergenic not near genes chr2R 7822156 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-563 296 chr2R 7869189 7869221 chr2R 7873975 7873983 Doc 8 4783 2.5 3.0 2.8 2.1 4794 chr2R 7869189 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873983 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-563 297 chr2R 7916424 7916441 chr2R 7916509 7916526 7 84 8.5 7.5 8.0 0.8 102 chr2R 7916424 5` UTR CG12159 - chr2R 7916475 5` UTR CG12159 - chr2R 7916526 intergenic CG12159 -,Cul1 + chr2R_7_7915001 chr2R_7915001 RAL-563 298 chr2R 8040796 8040816 chr2R 8040883 8040901 4 86 7.5 7.0 7.2 0.5 105 chr2R 8040796 intron Optix + chr2R 8040848 intron Optix + chr2R 8040901 intron Optix + chr2R_4_8040001 chr2R_8040001 RAL-563 299 chr2R 8043583 8043598 chr2R 8043833 8043850 4 251 5.0 4.0 4.5 0.7 267 chr2R 8043583 intergenic not near genes chr2R 8043716 intergenic not near genes chr2R 8043850 intergenic not near genes chr2R_4_8040001 chr2R_8040001 RAL-563 300 chr2R 8060496 8060514 chr2R 8060656 8060674 7 160 7.0 9.5 8.2 0.8 178 chr2R 8060496 intron CG12769 - chr2R 8060585 intron CG12769 - chr2R 8060674 intron CG12769 - chr2R_7_8060001 chr2R_8060001 RAL-563 301 chr2R 8089258 8089283 chr2R 8089343 8089369 8 85 2.5 1.0 1.8 2.9 111 chr2R 8089258 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089369 intergenic sut2 +,sut3 + chr2R_8_8085001 chr2R_8085001 RAL-563 302 chr2R 8105933 8105958 chr2R 8106024 8106049 5 91 7.5 8.0 7.8 0.6 116 chr2R 8105933 5` UTR Cul4 - chr2R 8105991 intron Cul4 - chr2R 8106049 5` UTR Cul4 - chr2R_5_8105001 chr2R_8105001 RAL-563 303 chr2R 8155582 8155604 chr2R 8155670 8155689 8 88 12.5 11.0 11.8 0.6 107 chr2R 8155582 intron,intron Lpin -,kermit - chr2R 8155636 intron,intron Lpin -,kermit - chr2R 8155689 intron,intron Lpin -,kermit - chr2R_8_8155001 chr2R_8155001 RAL-563 304 chr2R 8249561 8249598 chr2R 8249643 8249680 7 82 3.0 0.5 1.8 2.5 119 chr2R 8249561 5` UTR CG44439 - chr2R 8249620 intergenic CG44439 - chr2R 8249680 intergenic CG44439 - chr2R_7_8245001 chr2R_8245001 RAL-563 305 chr2R 8287858 8287885 chr2R 8287957 8287984 4 98 4.0 5.0 4.5 0.7 126 chr2R 8287858 intergenic not near genes chr2R 8287921 intergenic not near genes chr2R 8287984 intergenic not near genes chr2R_4_8285001 chr2R_8285001 RAL-563 306 chr2R 8379784 8379818 chr2R 8379880 8379914 6 95 9.0 6.0 7.5 0.7 130 chr2R 8379784 intron pdm3 + chr2R 8379849 intron pdm3 + chr2R 8379914 intron pdm3 + chr2R_6_8375001 chr2R_8375001 RAL-563 307 chr2R 8398212 8398241 chr2R 8402991 8403021 Doc 8 4780 1.0 2.0 1.5 3.2 4809 chr2R 8398212 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403021 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-563 308 chr2R 8508764 8508784 chr2R 8508847 8508867 6 80 1.5 7.0 4.2 1.2 103 chr2R 8508764 intron mtt - chr2R 8508816 intron mtt - chr2R 8508867 intron mtt - chr2R_6_8505001 chr2R_8505001 RAL-563 309 chr2R 8554257 8554268 chr2R 8554345 8554356 4 88 9.5 5.0 7.2 0.5 99 chr2R 8554257 intergenic not near genes chr2R 8554306 intergenic not near genes chr2R 8554356 intergenic not near genes chr2R_4_8550001 chr2R_8550001 RAL-563 310 chr2R 8567822 8567846 chr2R 8569403 8569427 4 1581 4.5 12.0 8.2 0.4 1605 chr2R 8567822 intergenic not near genes chr2R 8568624 intergenic not near genes chr2R 8569427 intergenic not near genes chr2R_4_8565001 chr2R_8565001 RAL-563 311 chr2R 8677167 8677194 chr2R 8677251 8677278 6 84 6.0 7.0 6.5 0.8 111 chr2R 8677167 intron Acsl + chr2R 8677222 intron,5` UTR Acsl +,CG30354 + chr2R 8677278 intron,5` UTR Acsl +,CG30354 + chr2R_6_8675001 chr2R_8675001 RAL-563 312 chr2R 8714716 8714723 chr2R 8714788 8714809 8 85 0.0 1.5 0.8 4.4 93 chr2R 8714716 3` UTR PGRP-SC1b + chr2R 8714762 3` UTR PGRP-SC1b + chr2R 8714809 3` UTR PGRP-SC1b + chr2R_8_8710001 chr2R_8710001 RAL-563 313 chr2R 8722773 8722791 chr2R 8723003 8723032 pogo 5 237 3.0 4.5 3.8 1.0 259 chr2R 8722773 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-563 314 chr2R 8759772 8759789 chr2R 8759851 8759868 6 79 1.5 2.5 2.0 2.0 96 chr2R 8759772 intergenic CG8740 + chr2R 8759820 intergenic CG8740 + chr2R 8759868 intergenic CG8740 + chr2R_6_8755001 chr2R_8755001 RAL-563 315 chr2R 9046742 9046754 chr2R 9046799 9046830 6 74 9.5 10.5 10.0 0.5 88 chr2R 9046742 3` UTR CG13743 - chr2R 9046786 intron CG13743 - chr2R 9046830 intron CG13743 - chr2R_6_9045001 chr2R_9045001 RAL-563 316 chr2R 9065927 9065941 chr2R 9066009 9066023 4 82 3.0 3.0 3.0 1.0 96 chr2R 9065927 intron ana + chr2R 9065975 intron ana + chr2R 9066023 intron ana + chr2R_4_9065001 chr2R_9065001 RAL-563 317 chr2R 9151316 9151328 chr2R 9157786 9157796 Burdock 4 6469 2.5 2.5 2.5 1.1 6480 chr2R 9151316 3` UTR CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157796 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-563 318 chr2R 9198557 9198579 chr2R 9198638 9198660 4 80 1.0 1.5 1.2 1.8 103 chr2R 9198557 intron unpg + chr2R 9198608 intron unpg + chr2R 9198660 intron unpg + chr2R_4_9195001 chr2R_9195001 RAL-563 319 chr2R 9212701 9212722 chr2R 9213187 9213208 roo 12 483 3.5 4.5 4.0 2.4 507 chr2R 9212701 intergenic CR45309 + chr2R 9212954 intergenic CR45309 + chr2R 9213208 5` UTR CR45309 + chr2R_12_9210001 chr2R_9210001 RAL-563 320 chr2R 9217005 9217030 chr2R 9217081 9217106 5 76 20.0 19.5 19.8 0.2 101 chr2R 9217005 intergenic not near genes chr2R 9217056 intergenic not near genes chr2R 9217106 intergenic not near genes chr2R_5_9215001 chr2R_9215001 RAL-563 321 chr2R 9227870 9227896 chr2R 9227955 9227983 4 86 4.0 5.0 4.5 0.7 113 chr2R 9227870 3` UTR hig - chr2R 9227926 3` UTR hig - chr2R 9227983 3` UTR hig - chr2R_4_9225001 chr2R_9225001 RAL-563 322 chr2R 9270451 9270473 chr2R 9270533 9270560 5 86 4.5 7.0 5.8 0.7 109 chr2R 9270451 intron Pkn - chr2R 9270506 intron Pkn - chr2R 9270560 intron Pkn - chr2R_5_9270001 chr2R_9270001 RAL-563 323 chr2R 9368129 9368139 chr2R 9368205 9368212 6 75 2.0 0.5 1.2 2.7 83 chr2R 9368129 intron CG13954 - chr2R 9368170 intron CG13954 - chr2R 9368212 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-563 324 chr2R 9378114 9378142 chr2R 9378196 9378224 7 80 14.0 10.5 12.2 0.5 110 chr2R 9378114 intron CG13954 - chr2R 9378169 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_7_9375001 chr2R_9375001 RAL-563 325 chr2R 9407823 9407853 chr2R 9407916 9407946 7 93 7.5 7.5 7.5 0.8 123 chr2R 9407823 intron wun - chr2R 9407884 intron wun - chr2R 9407946 intron wun - chr2R_7_9405001 chr2R_9405001 RAL-563 326 chr2R 9442997 9443009 chr2R 9443076 9443088 4 79 3.5 5.0 4.2 0.8 91 chr2R 9442997 intron ced-6 - chr2R 9443042 intron ced-6 - chr2R 9443088 intron ced-6 - chr2R_4_9440001 chr2R_9440001 RAL-563 327 chr2R 9699418 9699439 chr2R 9699503 9699524 7 86 4.5 1.5 3.0 1.8 106 chr2R 9699418 intergenic not near genes chr2R 9699471 intergenic not near genes chr2R 9699524 intergenic not near genes chr2R_7_9695001 chr2R_9695001 RAL-563 328 chr2R 9746551 9746585 chr2R 9747884 9747918 4 1333 11.0 17.0 14.0 0.3 1367 chr2R 9746551 5` UTR sqa - chr2R 9747234 5` UTR sqa - chr2R 9747918 5` UTR sqa - chr2R_4_9745001 chr2R_9745001 RAL-563 329 chr2R 9871047 9871069 chr2R 9871532 9871555 roo 6 485 3.0 3.5 3.2 1.4 508 chr2R 9871047 intron cbx - chr2R 9871301 intron cbx - chr2R 9871555 intron,5` UTR cbx -,CG18446 + chr2R_6_9870001 chr2R_9870001 RAL-563 330 chr2R 9928418 9928448 chr2R 9928543 9928543 7 120 10.5 3.0 6.8 0.9 125 chr2R 9928418 intron Mef2 - chr2R 9928480 intron Mef2 - chr2R 9928543 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-563 331 chr2R 9945439 9945466 chr2R 9945634 9945662 BS 7 196 3.0 2.0 2.5 2.0 223 chr2R 9945439 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945662 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-563 332 chr2R 9956067 9956089 chr2R 9956144 9956165 5 77 4.0 3.0 3.5 1.1 98 chr2R 9956067 intron Mef2 - chr2R 9956116 intron Mef2 - chr2R 9956165 intron Mef2 - chr2R_5_9955001 chr2R_9955001 RAL-563 333 chr2R 10004589 10004619 chr2R 10004688 10004718 4 99 7.0 6.0 6.5 0.5 129 chr2R 10004589 intron Pka-R2 - chr2R 10004654 intron Pka-R2 - chr2R 10004718 intron Pka-R2 - chr2R_4_10000001 chr2R_10000001 RAL-563 334 chr2R 10005865 10005877 chr2R 10007030 10007039 1360 4 1164 4.5 5.0 4.8 0.7 1174 chr2R 10005865 intron Pka-R2 - chr2R 10006452 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-563 335 chr2R 10122747 10122751 chr2R 10122953 10122961 4 208 2.0 1.5 1.8 1.4 214 chr2R 10122747 intergenic Ccs - chr2R 10122854 intergenic Ccs - chr2R 10122961 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-563 336 chr2R 10132210 10132222 chr2R 10132290 10132302 4 80 0.5 8.0 4.2 0.8 92 chr2R 10132210 intron gem + chr2R 10132256 intron gem + chr2R 10132302 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-563 337 chr2R 10167116 10167144 chr2R 10167192 10167212 5 73 12.0 16.0 14.0 0.3 96 chr2R 10167116 intron KCNQ - chr2R 10167164 intron KCNQ - chr2R 10167212 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-563 338 chr2R 10216198 10216211 chr2R 10216276 10216289 5 78 1.5 4.5 3.0 1.2 91 chr2R 10216198 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216289 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-563 339 chr2R 10313316 10313350 chr2R 10313404 10313438 6 87 3.0 1.5 2.2 1.9 122 chr2R 10313316 intergenic not near genes chr2R 10313377 intergenic not near genes chr2R 10313438 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-563 340 chr2R 10454097 10454126 chr2R 10454174 10454203 4 77 4.0 5.0 4.5 0.7 106 chr2R 10454097 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454203 intron,intron Galphao +,Cyp49a1 - chr2R_4_10450001 chr2R_10450001 RAL-563 341 chr2R 10469031 10469052 chr2R 10469157 10469164 4 122 4.5 10.0 7.2 0.5 133 chr2R 10469031 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469164 intron CG11777 + chr2R_4_10465001 chr2R_10465001 RAL-563 342 chr2R 10538969 10538977 chr2R 10539186 10539193 4 215 5.0 6.5 5.8 0.6 224 chr2R 10538969 intron lola - chr2R 10539081 intron lola - chr2R 10539193 intron lola - chr2R_4_10535001 chr2R_10535001 RAL-563 343 chr2R 10585575 10585589 chr2R 10594158 10594172 Tirant 5 8582 1.5 3.5 2.5 1.4 8597 chr2R 10585575 intron psq + chr2R 10589874 intron psq + chr2R 10594172 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-563 344 chr2R 10827352 10827359 chr2R 10827420 10827447 8 75 13.0 11.0 12.0 0.6 95 chr2R 10827352 exon CG12325 + chr2R 10827400 3` UTR CG12325 + chr2R 10827447 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_8_10825001 chr2R_10825001 RAL-563 345 chr2R 10834096 10834104 chr2R 10834189 10834197 5 92 3.0 5.0 4.0 1.0 101 chr2R 10834096 intron CG12344 - chr2R 10834146 intron CG12344 - chr2R 10834197 intron CG12344 - chr2R_5_10830001 chr2R_10830001 RAL-563 346 chr2R 10948031 10948057 chr2R 10955578 10955603 17.6 7 7545 1.5 2.5 2.0 2.3 7572 chr2R 10948031 intergenic not near genes chr2R 10951817 intergenic not near genes chr2R 10955603 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-563 347 chr2R 11003637 11003651 chr2R 11003726 11003737 8 88 7.0 3.0 5.0 1.3 100 chr2R 11003637 intron luna - chr2R 11003687 intron luna - chr2R 11003737 intron luna - chr2R_8_11000001 chr2R_11000001 RAL-563 348 chr2R 11009823 11009843 chr2R 11018997 11019006 roo 6 9172 1.5 2.5 2.0 2.0 9183 chr2R 11009823 intron luna - chr2R 11014414 intron luna - chr2R 11019006 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-563 349 chr2R 11019899 11019911 chr2R 11024947 11024964 jockey 5 5056 1.0 5.5 3.2 1.2 5065 chr2R 11019899 intron luna - chr2R 11022432 intron luna - chr2R 11024964 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-563 350 chr2R 11086544 11086555 chr2R 11086631 11086642 4 86 9.5 5.5 7.5 0.5 98 chr2R 11086544 intron,intron,exon luna -,CG43188 +,CG43189 - chr2R 11086593 intron,intron,exon luna -,CG43188 +,CG43189 - chr2R 11086642 intron,intron,5` UTR luna -,CG43188 +,CG43189 - chr2R_4_11085001 chr2R_11085001 RAL-563 351 chr2R 11129824 11129846 chr2R 11129905 11129929 4 82 3.0 2.0 2.5 1.1 105 chr2R 11129824 intergenic not near genes chr2R 11129876 intergenic not near genes chr2R 11129929 intergenic not near genes chr2R_4_11125001 chr2R_11125001 RAL-563 352 chr2R 11133409 11133427 chr2R 11133631 11133632 5 218 9.0 2.0 5.5 0.8 223 chr2R 11133409 intergenic not near genes chr2R 11133520 intergenic not near genes chr2R 11133632 intergenic not near genes chr2R_5_11130001 chr2R_11130001 RAL-563 353 chr2R 11207815 11207829 chr2R 11208007 11208020 BS 7 192 11.5 2.0 6.8 0.9 205 chr2R 11207815 intron shn + chr2R 11207918 intron shn + chr2R 11208020 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-563 354 chr2R 11292973 11292995 chr2R 11293047 11293068 8 77 2.5 0.0 1.2 3.6 95 chr2R 11292973 exon,3` UTR dare -,CG30033 + chr2R 11293020 5` UTR,3` UTR dare -,CG30033 + chr2R 11293068 5` UTR,3` UTR dare -,CG30033 + chr2R_8_11290001 chr2R_11290001 RAL-563 355 chr2R 11415529 11415549 chr2R 11418678 11418698 opus 4 3149 1.5 7.5 4.5 0.7 3169 chr2R 11415529 intron Drip - chr2R 11417114 intron Drip - chr2R 11418698 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-563 356 chr2R 11822984 11823006 chr2R 11823058 11823083 4 76 5.5 7.5 6.5 0.5 99 chr2R 11822984 intergenic not near genes chr2R 11823034 intergenic not near genes chr2R 11823083 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-563 357 chr2R 11825154 11825183 chr2R 11825526 11825555 4 372 8.0 11.0 9.5 0.4 401 chr2R 11825154 intergenic CG13192 + chr2R 11825354 5` UTR CG13192 + chr2R 11825555 intron CG13192 + chr2R_4_11825001 chr2R_11825001 RAL-563 358 chr2R 11909660 11909676 chr2R 11909787 11909803 6 128 16.0 7.5 11.8 0.5 143 chr2R 11909660 intron CG13183 - chr2R 11909732 intron CG13183 - chr2R 11909803 intron CG13183 - chr2R_6_11905001 chr2R_11905001 RAL-563 359 chr2R 11934409 11934434 chr2R 11934743 11934772 5 337 8.5 6.0 7.2 0.6 363 chr2R 11934409 intergenic not near genes chr2R 11934590 intergenic not near genes chr2R 11934772 intergenic not near genes chr2R_5_11930001 chr2R_11930001 RAL-563 360 chr2R 11951071 11951092 chr2R 11953189 11953210 6 2118 12.0 15.5 13.8 0.4 2139 chr2R 11951071 intron CG13188 + chr2R 11952140 intron CG13188 + chr2R 11953210 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-563 361 chr2R 11950665 11950684 chr2R 11953612 11953633 6 2948 15.5 14.5 15.0 0.4 2968 chr2R 11950665 intron CG13188 + chr2R 11952149 intron CG13188 + chr2R 11953633 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-563 362 chr2R 12187471 12187505 chr2R 12190087 12190123 35 2619 68.5 56.0 62.2 0.6 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_35_12185001 chr2R_12185001 RAL-563 363 chr2R 12363395 12363412 chr2R 12363827 12363844 6 432 8.0 8.0 8.0 0.7 449 chr2R 12363395 intergenic CG30043 + chr2R 12363620 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_6_12360001 chr2R_12360001 RAL-563 364 chr2R 12385344 12385376 chr2R 12385425 12385446 5 79 2.5 4.0 3.2 1.2 102 chr2R 12385344 intergenic not near genes chr2R 12385395 intergenic not near genes chr2R 12385446 intergenic not near genes chr2R_5_12385001 chr2R_12385001 RAL-563 365 chr2R 12481148 12481169 chr2R 12482938 12482950 roo 7 1791 2.0 3.5 2.8 1.8 1802 chr2R 12481148 exon Dh44-R2 + chr2R 12482049 intron Dh44-R2 + chr2R 12482950 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-563 366 chr2R 12501701 12501717 chr2R 12503863 12503864 Rt1c 9 2160 0.5 11.0 5.8 1.3 2163 chr2R 12501701 intron fdl - chr2R 12502782 intron fdl - chr2R 12503864 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-563 367 chr2R 12501718 12501724 chr2R 12503851 12503886 Rt1c 8 2153 0.5 9.5 5.0 1.3 2168 chr2R 12501718 intron fdl - chr2R 12502802 intron fdl - chr2R 12503886 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-563 368 chr2R 12534377 12534395 chr2R 12534560 12534578 5 181 12.5 3.0 7.8 0.6 201 chr2R 12534377 intron fra + chr2R 12534478 intron fra + chr2R 12534578 intron fra + chr2R_5_12530001 chr2R_12530001 RAL-563 369 chr2R 12597976 12597990 chr2R 12598054 12598090 4 94 2.5 3.0 2.8 1.1 114 chr2R 12597976 intron Amph + chr2R 12598033 intron Amph + chr2R 12598090 intron Amph + chr2R_4_12595001 chr2R_12595001 RAL-563 370 chr2R 12789297 12789327 chr2R 12797660 12797690 roo 5 8360 2.0 2.5 2.2 1.6 8393 chr2R 12789297 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-563 371 chr2R 12815619 12815629 chr2R 12816339 12816349 4 720 12.5 8.0 10.2 0.4 730 chr2R 12815619 intergenic not near genes chr2R 12815984 intergenic not near genes chr2R 12816349 intergenic not near genes chr2R_4_12815001 chr2R_12815001 RAL-563 372 chr2R 12819453 12819478 chr2R 12824522 12824549 jockey 4 5069 1.5 1.5 1.5 1.6 5096 chr2R 12819453 intergenic not near genes chr2R 12822001 intergenic not near genes chr2R 12824549 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-563 373 chr2R 12928692 12928713 chr2R 12931799 12931821 7 3108 11.0 18.0 14.5 0.5 3129 chr2R 12928692 intron sug + chr2R 12930256 exon sug + chr2R 12931821 exon CG17019 - chr2R_7_12930001 chr2R_12930001 RAL-563 374 chr2R 13136843 13136866 chr2R 13141641 13141664 Doc 6 4798 3.0 5.5 4.2 1.2 4821 chr2R 13136843 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141664 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-563 375 chr2R 13220539 13220553 chr2R 13220638 13220652 5 99 0.0 3.5 1.8 1.8 113 chr2R 13220539 intron CG17059 + chr2R 13220596 intron CG17059 + chr2R 13220652 intron CG17059 + chr2R_5_13220001 chr2R_13220001 RAL-563 376 chr2R 13431496 13431520 chr2R 13431575 13431599 5 79 1.5 2.0 1.8 1.8 103 chr2R 13431496 intron CG42321 - chr2R 13431548 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-563 377 chr2R 13580502 13580532 chr2R 13580851 13580879 jockey 7 348 0.5 4.5 2.5 2.0 377 chr2R 13580502 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-563 378 chr2R 13590006 13590013 chr2R 13590105 13590113 5 100 20.5 11.5 16.0 0.3 107 chr2R 13590006 intron,intron CG6191 -,CG45088 - chr2R 13590060 intron,intron CG6191 -,CG45088 - chr2R 13590113 intron,intron CG6191 -,CG45088 - chr2R_5_13590001 chr2R_13590001 RAL-563 379 chr2R 13790326 13790331 chr2R 13790402 13790407 4 76 6.0 0.0 3.0 1.0 81 chr2R 13790326 intergenic not near genes chr2R 13790366 intergenic not near genes chr2R 13790407 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-563 380 chr2R 13797324 13797351 chr2R 13797452 13797481 5 130 8.5 5.5 7.0 0.6 157 chr2R 13797324 intron Cpr50Cb + chr2R 13797402 intron Cpr50Cb + chr2R 13797481 intron Cpr50Cb + chr2R_5_13795001 chr2R_13795001 RAL-563 381 chr2R 13922626 13922654 chr2R 13922702 13922729 8 75 9.5 8.0 8.8 0.8 103 chr2R 13922626 intron shot - chr2R 13922678 intron shot - chr2R 13922729 intron shot - chr2R_8_13920001 chr2R_13920001 RAL-563 382 chr2R 14386443 14386464 chr2R 14386530 14386550 4 87 2.5 4.0 3.2 1.0 107 chr2R 14386443 intergenic not near genes chr2R 14386496 intergenic not near genes chr2R 14386550 intergenic not near genes chr2R_4_14385001 chr2R_14385001 RAL-563 383 chr2R 14467308 14467324 chr2R 14476454 14476482 roo 4 9154 3.0 4.0 3.5 0.9 9174 chr2R 14467308 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-563 384 chr2R 14538965 14538986 chr2R 14539035 14539062 5 70 6.0 3.0 4.5 0.9 97 chr2R 14538965 intron ttv + chr2R 14539014 intron ttv + chr2R 14539062 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-563 385 chr2R 14565559 14565585 chr2R 14565636 14565662 6 77 3.5 3.5 3.5 1.3 103 chr2R 14565559 intron ttv + chr2R 14565610 intron ttv + chr2R 14565662 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-563 386 chr2R 14855034 14855062 chr2R 14855122 14855122 11 87 3.0 0.5 1.8 3.9 88 chr2R 14855034 5` UTR Ciao1 - chr2R 14855078 intergenic Ciao1 -,HPS1 + chr2R 14855122 intergenic Ciao1 -,HPS1 + chr2R_11_14855001 chr2R_14855001 RAL-563 387 chr2R 14911701 14911728 chr2R 14911824 14911849 5 123 2.5 1.5 2.0 1.7 148 chr2R 14911701 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-563 388 chr2R 14999924 14999958 chr2R 15000008 15000042 6 83 5.0 3.5 4.2 1.2 118 chr2R 14999924 intergenic not near genes chr2R 14999983 intergenic not near genes chr2R 15000042 intergenic not near genes chr2R_6_14995001 chr2R_14995001 RAL-563 389 chr2R 15004727 15004753 chr2R 15005056 15005082 jockey 5 329 3.0 1.5 2.2 1.6 355 chr2R 15004727 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005082 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-563 390 chr2R 15008614 15008652 chr2R 15008735 15008773 5 121 6.5 11.0 8.8 0.5 159 chr2R 15008614 intergenic not near genes chr2R 15008694 intergenic not near genes chr2R 15008773 intergenic not near genes chr2R_5_15005001 chr2R_15005001 RAL-563 391 chr2R 15015454 15015484 chr2R 15022878 15022908 mdg1 7 7424 1.5 1.5 1.5 2.8 7454 chr2R 15015454 intron hbs + chr2R 15019181 intron hbs + chr2R 15022908 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-563 392 chr2R 15137973 15137997 chr2R 15138053 15138079 4 81 2.0 0.0 1.0 2.0 106 chr2R 15137973 intron chn + chr2R 15138026 intron chn + chr2R 15138079 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-563 393 chr2R 15363667 15363680 chr2R 15363747 15363761 4 81 8.0 7.5 7.8 0.5 94 chr2R 15363667 intron unc-5 + chr2R 15363714 intron unc-5 + chr2R 15363761 intron unc-5 + chr2R_4_15360001 chr2R_15360001 RAL-563 394 chr2R 15390408 15390421 chr2R 15390502 15390515 4 94 11.5 10.0 10.8 0.3 107 chr2R 15390408 intergenic not near genes chr2R 15390462 intergenic not near genes chr2R 15390515 intergenic not near genes chr2R_4_15390001 chr2R_15390001 RAL-563 395 chr2R 15450997 15451017 chr2R 15451089 15451112 7 93 6.5 6.5 6.5 0.9 115 chr2R 15450997 intron CG43729 + chr2R 15451054 intron CG43729 + chr2R 15451112 intron CG43729 + chr2R_7_15450001 chr2R_15450001 RAL-563 396 chr2R 15645700 15645705 chr2R 15645776 15645801 4 86 6.0 3.0 4.5 0.7 101 chr2R 15645700 intron CG42524 + chr2R 15645750 intron CG42524 + chr2R 15645801 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-563 397 chr2R 15700253 15700278 chr2R 15700348 15700363 5 93 3.0 6.0 4.5 0.9 110 chr2R 15700253 intron,5` UTR CG30080 -,CG42662 - chr2R 15700308 intron,5` UTR CG30080 -,CG42662 - chr2R 15700363 intron,5` UTR CG30080 -,CG42662 - chr2R_5_15700001 chr2R_15700001 RAL-563 398 chr2R 15833522 15833537 chr2R 15833609 15833613 5 82 7.0 4.0 5.5 0.8 91 chr2R 15833522 intron,intron tun +,Poxn - chr2R 15833568 intron,intron tun +,Poxn - chr2R 15833613 intron,intron tun +,Poxn - chr2R_5_15830001 chr2R_15830001 RAL-563 399 chr2R 15951836 15951867 chr2R 15951912 15951936 4 74 3.0 3.0 3.0 1.0 100 chr2R 15951836 intron Strn-Mlck - chr2R 15951886 intron Strn-Mlck - chr2R 15951936 intron Strn-Mlck - chr2R_4_15950001 chr2R_15950001 RAL-563 400 chr2R 16113853 16113867 chr2R 16114357 16114371 4 503 9.0 3.5 6.2 0.6 518 chr2R 16113853 exon Asph + chr2R 16114112 exon Asph + chr2R 16114371 exon Asph + chr2R_4_16110001 chr2R_16110001 RAL-563 401 chr2R 16578355 16578360 chr2R 16578485 16578493 4 130 3.5 8.5 6.0 0.6 138 chr2R 16578355 intergenic not near genes chr2R 16578424 intergenic not near genes chr2R 16578493 intergenic not near genes chr2R_4_16575001 chr2R_16575001 RAL-563 402 chr2R 16672810 16672822 chr2R 16672890 16672902 4 80 4.5 1.5 3.0 1.0 92 chr2R 16672810 exon CG34458 + chr2R 16672856 3` UTR CG34458 + chr2R 16672902 intergenic CG34458 +,CG30463 - chr2R_4_16670001 chr2R_16670001 RAL-563 403 chr2R 16708999 16709013 chr2R 16709094 16709103 6 95 3.5 4.0 3.8 1.2 104 chr2R 16708999 intron CG30463 - chr2R 16709051 intron CG30463 - chr2R 16709103 intron CG30463 - chr2R_6_16705001 chr2R_16705001 RAL-563 404 chr2R 16912695 16912711 chr2R 16912836 16912852 4 141 14.0 13.5 13.8 0.3 157 chr2R 16912695 intergenic not near genes chr2R 16912774 intergenic not near genes chr2R 16912852 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-563 405 chr2R 17024817 17024839 chr2R 17024892 17024907 10 76 9.0 12.5 10.8 0.8 90 chr2R 17024817 exon,3` UTR Ark +,CR44390 - chr2R 17024862 exon,3` UTR Ark +,CR44390 - chr2R 17024907 exon,3` UTR Ark +,CR44390 - chr2R_10_17020001 chr2R_17020001 RAL-563 406 chr2R 17147246 17147257 chr2R 17152277 17152288 jockey 6 5031 3.5 0.5 2.0 2.0 5042 chr2R 17147246 intergenic not near genes chr2R 17149767 intergenic not near genes chr2R 17152288 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-563 407 chr2R 17236519 17236541 chr2R 17241723 17241745 copia 7 5204 1.0 3.0 2.0 2.3 5226 chr2R 17236519 intron mbl + chr2R 17239132 intron mbl + chr2R 17241745 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-563 408 chr2R 17277237 17277244 chr2R 17277645 17277652 jockey 4 406 1.0 3.0 2.0 1.3 415 chr2R 17277237 intron mbl + chr2R 17277444 intron mbl + chr2R 17277652 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-563 409 chr2R 17286796 17286823 chr2R 17286874 17286901 6 77 10.5 11.5 11.0 0.5 105 chr2R 17286796 intron mbl + chr2R 17286848 intron mbl + chr2R 17286901 intron mbl + chr2R_6_17285001 chr2R_17285001 RAL-563 410 chr2R 17724870 17724874 chr2R 17724945 17724953 5 78 5.5 2.0 3.8 1.0 83 chr2R 17724870 3` UTR CG10933 + chr2R 17724912 3` UTR CG10933 + chr2R 17724953 3` UTR CG10933 + chr2R_5_17720001 chr2R_17720001 RAL-563 411 chr2R 17772481 17772498 chr2R 17772610 17772616 9 127 9.5 8.5 9.0 0.9 135 chr2R 17772481 exon CG6362 - chr2R 17772548 exon CG6362 - chr2R 17772616 intergenic CG6362 - chr2R_9_17770001 chr2R_17770001 RAL-563 412 chr2R 17846778 17846808 chr2R 17846861 17846892 12 84 9.5 5.5 7.5 1.4 114 chr2R 17846778 intron,5` UTR olf186-F +,olf186-M + chr2R 17846835 intron,5` UTR olf186-F +,olf186-M + chr2R 17846892 intron,5` UTR olf186-F +,olf186-M + chr2R_12_17845001 chr2R_17845001 RAL-563 413 chr2R 17997079 17997186 chr2R 17997177 17997268 7 86 3.5 9.5 6.5 0.9 189 chr2R 17997079 intron dpr13 - chr2R 17997174 intron dpr13 - chr2R 17997268 intron dpr13 - chr2R_7_17995001 chr2R_17995001 RAL-563 414 chr2R 18207319 18207348 chr2R 18207405 18207416 4 75 4.5 9.5 7.0 0.5 97 chr2R 18207319 intergenic CG30114 + chr2R 18207368 intergenic CG30114 + chr2R 18207416 intergenic CG30114 + chr2R_4_18205001 chr2R_18205001 RAL-563 415 chr2R 18276472 18276507 chr2R 18276986 18277021 7 512 7.5 6.0 6.8 0.9 549 chr2R 18276472 exon Ote - chr2R 18276746 exon Ote - chr2R 18277021 exon Ote - chr2R_7_18275001 chr2R_18275001 RAL-563 416 chr2R 18402509 18402533 chr2R 18402597 18402602 6 84 4.0 4.0 4.0 1.2 93 chr2R 18402509 intergenic not near genes chr2R 18402556 intergenic not near genes chr2R 18402602 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-563 417 chr2R 18408287 18408312 chr2R 18408408 18408433 6 120 6.0 10.5 8.2 0.7 146 chr2R 18408287 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408433 exon GstE8 + chr2R_6_18405001 chr2R_18405001 RAL-563 418 chr2R 18414552 18414580 chr2R 18414697 18414725 4 145 5.5 2.5 4.0 0.8 173 chr2R 18414552 intron Dp1 + chr2R 18414638 intron Dp1 + chr2R 18414725 intron Dp1 + chr2R_4_18410001 chr2R_18410001 RAL-563 419 chr2R 18526593 18526689 chr2R 18526675 18526889 11 156 4.5 5.5 5.0 1.8 296 chr2R 18526593 intergenic CG43066 + chr2R 18526741 intergenic CG43066 + chr2R 18526889 intergenic CG43066 + chr2R_11_18525001 chr2R_18525001 RAL-563 420 chr2R 18553002 18553021 chr2R 18553082 18553101 4 80 13.5 8.0 10.8 0.3 99 chr2R 18553002 intergenic not near genes chr2R 18553052 intergenic not near genes chr2R 18553101 intergenic not near genes chr2R_4_18550001 chr2R_18550001 RAL-563 421 chr2R 18575811 18575831 chr2R 18581984 18582015 3S18 4 6178 2.0 2.0 2.0 1.3 6204 chr2R 18575811 intron GEFmeso - chr2R 18578913 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-563 422 chr2R 18590867 18590895 chr2R 18600019 18600047 roo 5 9152 4.0 1.5 2.8 1.3 9180 chr2R 18590867 intron GEFmeso - chr2R 18595457 intron GEFmeso - chr2R 18600047 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-563 423 chr2R 18662364 18662377 chr2R 18662447 18662460 4 83 1.5 0.0 0.8 2.2 96 chr2R 18662364 intergenic not near genes chr2R 18662412 intergenic not near genes chr2R 18662460 intergenic not near genes chr2R_4_18660001 chr2R_18660001 RAL-563 424 chr2R 18880362 18880384 chr2R 18880447 18880469 5 85 7.0 8.5 7.8 0.6 107 chr2R 18880362 intron sano + chr2R 18880416 intron sano + chr2R 18880469 intron sano + chr2R_5_18880001 chr2R_18880001 RAL-563 425 chr2R 19015444 19015464 chr2R 19015531 19015552 8 87 7.5 15.0 11.2 0.7 108 chr2R 19015444 intergenic not near genes chr2R 19015498 intergenic not near genes chr2R 19015552 intergenic not near genes chr2R_8_19015001 chr2R_19015001 RAL-563 426 chr2R 19168741 19168752 chr2R 19168822 19168833 4 81 2.5 0.0 1.2 1.8 92 chr2R 19168741 intron CG10737 + chr2R 19168787 intron CG10737 + chr2R 19168833 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-563 427 chr2R 19183354 19183371 chr2R 19183430 19183442 5 72 0.5 4.0 2.2 1.6 88 chr2R 19183354 intron hppy + chr2R 19183398 intron hppy + chr2R 19183442 intron hppy + chr2R_5_19180001 chr2R_19180001 RAL-563 428 chr2R 19202267 19202271 chr2R 19202397 19202397 4 128 7.0 8.0 7.5 0.5 130 chr2R 19202267 intron hppy + chr2R 19202332 intron hppy + chr2R 19202397 intron hppy + chr2R_4_19200001 chr2R_19200001 RAL-563 429 chr2R 19251354 19251383 chr2R 19251451 19251480 4 97 5.0 5.5 5.2 0.6 126 chr2R 19251354 exon CG33454 - chr2R 19251417 exon CG33454 - chr2R 19251480 exon CG33454 - chr2R_4_19250001 chr2R_19250001 RAL-563 430 chr2R 19528846 19528860 chr2R 19528934 19528949 4 89 4.0 4.5 4.2 0.8 103 chr2R 19528846 3` UTR sm - chr2R 19528898 3` UTR sm - chr2R 19528949 3` UTR sm - chr2R_4_19525001 chr2R_19525001 RAL-563 431 chr2R 19535571 19535598 chr2R 19535654 19535682 5 84 16.5 13.0 14.8 0.3 111 chr2R 19535571 intron sm - chr2R 19535626 intron sm - chr2R 19535682 intron sm - chr2R_5_19535001 chr2R_19535001 RAL-563 432 chr2R 19554488 19554499 chr2R 19555730 19555741 4 1242 11.5 8.5 10.0 0.4 1253 chr2R 19554488 intron sm - chr2R 19555114 intron sm - chr2R 19555741 intron sm - chr2R_4_19555001 chr2R_19555001 RAL-563 433 chr2R 19589989 19590025 chr2R 19590072 19590108 8 82 9.5 7.0 8.2 0.9 119 chr2R 19589989 intron sm - chr2R 19590048 intron sm - chr2R 19590108 intron sm - chr2R_8_19590001 chr2R_19590001 RAL-563 434 chr2R 19692616 19692643 chr2R 19692849 19692876 5 233 4.5 11.5 8.0 0.6 260 chr2R 19692616 5` UTR CR44506 + chr2R 19692746 5` UTR CR44506 + chr2R 19692876 5` UTR CR44506 + chr2R_5_19690001 chr2R_19690001 RAL-563 435 chr2R 19776593 19776627 chr2R 19779916 19779950 jockey 7 3323 5.0 3.0 4.0 1.4 3357 chr2R 19776593 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-563 436 chr2R 19957430 19957462 chr2R 19962632 19962663 copia 6 5201 2.5 2.0 2.2 1.9 5233 chr2R 19957430 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-563 437 chr2R 20218784 20218795 chr2R 20218867 20218878 4 83 3.0 2.5 2.8 1.1 94 chr2R 20218784 intergenic not near genes chr2R 20218831 intergenic not near genes chr2R 20218878 intergenic not near genes chr2R_4_20215001 chr2R_20215001 RAL-563 438 chr2R 20336359 20336372 chr2R 20336452 20336465 6 93 7.5 11.0 9.2 0.6 106 chr2R 20336359 intergenic not near genes chr2R 20336412 intergenic not near genes chr2R 20336465 intergenic not near genes chr2R_6_20335001 chr2R_20335001 RAL-563 439 chr2R 20395175 20395190 chr2R 20395249 20395266 5 76 7.0 5.0 6.0 0.7 91 chr2R 20395175 intergenic not near genes chr2R 20395220 intergenic not near genes chr2R 20395266 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-563 440 chr2R 20483915 20483945 chr2R 20484288 20484308 8 370 4.5 4.0 4.2 1.5 393 chr2R 20483915 intergenic not near genes chr2R 20484112 intergenic not near genes chr2R 20484308 intergenic not near genes chr2R_8_20480001 chr2R_20480001 RAL-563 441 chr2R 20523053 20523059 chr2R 20523155 20523170 6 107 9.5 11.5 10.5 0.5 117 chr2R 20523053 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523170 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-563 442 chr2R 20706653 20706664 chr2R 20706836 20706847 4 183 2.5 5.0 3.8 0.8 194 chr2R 20706653 intron dpr + chr2R 20706750 intron dpr + chr2R 20706847 intron dpr + chr2R_4_20705001 chr2R_20705001 RAL-563 443 chr2R 20739440 20739478 chr2R 20744208 20744231 F-element 8 4766 0.5 2.0 1.2 3.6 4791 chr2R 20739440 intron dpr + chr2R 20741836 intron dpr + chr2R 20744231 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-563 444 chr2R 20838700 20838726 chr2R 20838946 20838972 6 246 6.0 5.5 5.8 0.9 272 chr2R 20838700 intergenic CR44667 + chr2R 20838836 intergenic CR44667 + chr2R 20838972 intergenic CR44667 + chr2R_6_20835001 chr2R_20835001 RAL-563 445 chr2R 20962907 20962921 chr2R 20963005 20963019 6 98 8.5 6.0 7.2 0.7 112 chr2R 20962907 intergenic not near genes chr2R 20962963 intergenic not near genes chr2R 20963019 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-563 446 chr2R 21032332 21032356 chr2R 21032459 21032484 7 127 4.5 3.0 3.8 1.5 152 chr2R 21032332 intergenic not near genes chr2R 21032408 intergenic not near genes chr2R 21032484 intergenic not near genes chr2R_7_21030001 chr2R_21030001 RAL-563 447 chr2R 21251819 21251841 chr2R 21252046 21252068 4 227 3.0 0.5 1.8 1.4 249 chr2R 21251819 intergenic not near genes chr2R 21251944 intergenic not near genes chr2R 21252068 intergenic not near genes chr2R_4_21250001 chr2R_21250001 RAL-563 448 chr2R 21418539 21418564 chr2R 21418616 21418641 8 77 4.5 3.5 4.0 1.6 102 chr2R 21418539 intron Sdc - chr2R 21418590 intron Sdc - chr2R 21418641 intron Sdc - chr2R_8_21415001 chr2R_21415001 RAL-563 449 chr2R 21467530 21467543 chr2R 21467615 21467625 8 86 3.0 0.5 1.8 2.9 95 chr2R 21467530 intron Sdc - chr2R 21467578 intron Sdc - chr2R 21467625 intron Sdc - chr2R_8_21465001 chr2R_21465001 RAL-563 450 chr2R 21605920 21605950 chr2R 21606004 21606031 6 82 4.0 8.5 6.2 0.8 111 chr2R 21605920 3` UTR CG10433 - chr2R 21605976 3` UTR CG10433 - chr2R 21606031 3` UTR CG10433 - chr2R_6_21605001 chr2R_21605001 RAL-563 451 chr2R 21700162 21700183 chr2R 21700242 21700248 9 81 10.0 6.5 8.2 1.0 86 chr2R 21700162 intron HmgZ - chr2R 21700205 intron HmgZ - chr2R 21700248 intron HmgZ - chr2R_9_21700001 chr2R_21700001 RAL-563 452 chr2R 21708167 21708195 chr2R 21709969 21709997 5 1802 3.5 2.5 3.0 1.2 1830 chr2R 21708167 intron HmgD + chr2R 21709082 intron,3` UTR HmgD +,CR44749 - chr2R 21709997 intron,3` UTR HmgD +,CG30403 - chr2R_5_21705001 chr2R_21705001 RAL-563 453 chr2R 21730877 21730889 chr2R 21730984 21730996 4 107 6.5 5.5 6.0 0.6 119 chr2R 21730877 intergenic not near genes chr2R 21730936 intergenic not near genes chr2R 21730996 intergenic not near genes chr2R_4_21730001 chr2R_21730001 RAL-563 454 chr2R 21753086 21753116 chr2R 21753571 21753601 roo 7 485 3.5 4.0 3.8 1.5 515 chr2R 21753086 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-563 455 chr2R 21809528 21809555 chr2R 21817768 21817795 roo 5 8240 0.5 3.5 2.0 1.7 8267 chr2R 21809528 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817795 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-563 456 chr2R 21841475 21841502 chr2R 21841560 21841587 5 85 5.5 4.5 5.0 0.8 112 chr2R 21841475 intergenic not near genes chr2R 21841531 intergenic not near genes chr2R 21841587 intergenic not near genes chr2R_5_21840001 chr2R_21840001 RAL-563 457 chr2R 21932258 21932281 chr2R 21932336 21932358 4 78 11.0 9.0 10.0 0.4 100 chr2R 21932258 intron Fili + chr2R 21932308 intron Fili + chr2R 21932358 intron Fili + chr2R_4_21930001 chr2R_21930001 RAL-563 458 chr2R 22013000 22013010 chr2R 22013095 22013104 4 94 2.5 2.5 2.5 1.1 104 chr2R 22013000 intron CG34370 - chr2R 22013052 intron CG34370 - chr2R 22013104 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-563 459 chr2R 22069718 22069740 chr2R 22069799 22069812 5 77 6.0 5.5 5.8 0.7 94 chr2R 22069718 3` UTR Snp + chr2R 22069765 3` UTR CG11475 - chr2R 22069812 exon CG11475 - chr2R_5_22065001 chr2R_22065001 RAL-563 460 chr2R 22072706 22072713 chr2R 22072790 22072798 5 84 4.0 11.0 7.5 0.6 92 chr2R 22072706 intron CG11474 - chr2R 22072752 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_5_22070001 chr2R_22070001 RAL-563 461 chr2R 22095975 22095984 chr2R 22096058 22096066 4 83 10.0 10.0 10.0 0.4 91 chr2R 22095975 intron CG11073 - chr2R 22096020 intron CG11073 - chr2R 22096066 intron CG11073 - chr2R_4_22095001 chr2R_22095001 RAL-563 462 chr2R 22124321 22124330 chr2R 22124410 22124419 4 89 6.5 5.5 6.0 0.6 98 chr2R 22124321 3` UTR mei-S332 + chr2R 22124370 intergenic mei-S332 +,GM130 - chr2R 22124419 intergenic mei-S332 +,GM130 - chr2R_4_22120001 chr2R_22120001 RAL-563 463 chr2R 22135436 22135467 chr2R 22135545 22135576 5 109 6.0 6.0 6.0 0.7 140 chr2R 22135436 intergenic not near genes chr2R 22135506 intergenic not near genes chr2R 22135576 intergenic not near genes chr2R_5_22135001 chr2R_22135001 RAL-563 464 chr2R 22179224 22179234 chr2R 22179305 22179315 5 81 10.5 13.5 12.0 0.4 91 chr2R 22179224 intron CG11170 - chr2R 22179270 intron CG11170 - chr2R 22179315 intron CG11170 - chr2R_5_22175001 chr2R_22175001 RAL-563 465 chr2R 22349695 22349721 chr2R 22351479 22351505 jockey 8 1783 4.5 3.5 4.0 1.6 1810 chr2R 22349695 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-563 466 chr2R 22499854 22499864 chr2R 22499930 22499940 4 76 0.0 1.5 0.8 2.2 86 chr2R 22499854 intron px - chr2R 22499897 intron px - chr2R 22499940 intron px - chr2R_4_22495001 chr2R_22495001 RAL-563 467 chr2R 22503870 22503896 chr2R 22503963 22503991 4 94 0.0 0.5 0.2 3.3 121 chr2R 22503870 intron px - chr2R 22503930 intron px - chr2R 22503991 intron px - chr2R_4_22500001 chr2R_22500001 RAL-563 468 chr2R 22525759 22525785 chr2R 22529318 22529343 jockey 8 3559 2.5 1.5 2.0 2.7 3584 chr2R 22525759 intron px - chr2R 22527551 intron px - chr2R 22529343 intron px - chr2R_8_22525001 chr2R_22525001 RAL-563 469 chr2R 22756552 22756628 chr2R 22756628 22756712 6 76 7.0 5.5 6.2 0.8 160 chr2R 22756552 intron,intron CG42260 -,CR30267 + chr2R 22756632 intron,intron CG42260 -,CR30267 + chr2R 22756712 intron,intron CG42260 -,CR30267 + chr2R_6_22755001 chr2R_22755001 RAL-563 470 chr2R 22907428 22907435 chr2R 22907497 22907525 4 86 9.5 15.5 12.5 0.3 97 chr2R 22907428 intron nahoda + chr2R 22907476 intron nahoda + chr2R 22907525 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-563 471 chr2R 22968138 22968162 chr2R 22968227 22968251 4 88 4.5 8.5 6.5 0.5 113 chr2R 22968138 intergenic not near genes chr2R 22968194 intergenic not near genes chr2R 22968251 intergenic not near genes chr2R_4_22965001 chr2R_22965001 RAL-563 472 chr2R 22991642 22991655 chr2R 22991734 22991747 4 91 7.5 8.5 8.0 0.4 105 chr2R 22991642 intron twi + chr2R 22991694 intron twi + chr2R 22991747 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-563 473 chr2R 23029612 23029625 chr2R 23029689 23029702 4 77 5.5 4.0 4.8 0.7 90 chr2R 23029612 intron,intron twi +,CG42741 - chr2R 23029657 intron,intron twi +,CG42741 - chr2R 23029702 intron,intron twi +,CG42741 - chr2R_4_23025001 chr2R_23025001 RAL-563 474 chr2R 23052652 23052685 chr2R 23052728 23052761 5 76 2.0 2.0 2.0 1.7 109 chr2R 23052652 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052761 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-563 475 chr2R 23053997 23054023 chr2R 23054075 23054100 11 77 7.5 5.0 6.2 1.5 103 chr2R 23053997 intergenic not near genes chr2R 23054048 intergenic not near genes chr2R 23054100 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-563 476 chr2R 23133454 23133471 chr2R 23133533 23133550 4 79 2.5 4.0 3.2 1.0 96 chr2R 23133454 intergenic not near genes chr2R 23133502 intergenic not near genes chr2R 23133550 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-563 477 chr2R 23175038 23175066 chr2R 23175115 23175142 11 74 7.0 4.5 5.8 1.6 104 chr2R 23175038 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175142 intron CG34371 - chr2R_11_23175001 chr2R_23175001 RAL-563 478 chr2R 23225971 23225984 chr2R 23226075 23226088 4 104 7.0 4.5 5.8 0.6 117 chr2R 23225971 intergenic not near genes chr2R 23226030 intergenic not near genes chr2R 23226088 intergenic not near genes chr2R_4_23225001 chr2R_23225001 RAL-563 479 chr2R 23314804 23314818 chr2R 23314892 23314906 5 88 6.5 5.0 5.8 0.7 102 chr2R 23314804 intergenic not near genes chr2R 23314855 intergenic not near genes chr2R 23314906 intergenic not near genes chr2R_5_23310001 chr2R_23310001 RAL-563 480 chr2R 23351923 23351945 chr2R 23352009 23352028 4 85 4.0 6.5 5.2 0.6 105 chr2R 23351923 exon CG34210 + chr2R 23351976 3` UTR CG34210 + chr2R 23352028 3` UTR CG34210 + chr2R_4_23350001 chr2R_23350001 RAL-563 481 chr2R 23422648 23422671 chr2R 23422728 23422749 4 80 9.5 4.5 7.0 0.5 101 chr2R 23422648 intron CG9815 - chr2R 23422698 intron CG9815 - chr2R 23422749 intron CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-563 482 chr2R 23529573 23529606 chr2R 23537149 23537176 412 13 7568 2.5 2.5 2.5 3.7 7603 chr2R 23529573 intron bw - chr2R 23533374 intron bw - chr2R 23537176 exon bw - chr2R_13_23530001 chr2R_23530001 RAL-563 483 chr2R 23566160 23566191 chr2R 23566239 23566269 5 79 5.0 4.5 4.8 0.9 109 chr2R 23566160 intron apt + chr2R 23566214 intron apt + chr2R 23566269 intron apt + chr2R_5_23565001 chr2R_23565001 RAL-563 484 chr2R 23570715 23570733 chr2R 23570803 23570821 4 88 10.0 8.5 9.2 0.4 106 chr2R 23570715 intron apt + chr2R 23570768 intron apt + chr2R 23570821 intron apt + chr2R_4_23570001 chr2R_23570001 RAL-563 485 chr2R 23641321 23641328 chr2R 23641401 23641403 4 77 3.5 4.5 4.0 0.8 82 chr2R 23641321 intron retn + chr2R 23641362 intron retn + chr2R 23641403 intron retn + chr2R_4_23640001 chr2R_23640001 RAL-563 486 chr2R 23641329 23641344 chr2R 23641398 23641423 4 70 2.0 4.5 3.2 1.0 94 chr2R 23641329 intron retn + chr2R 23641376 intron retn + chr2R 23641423 intron retn + chr2R_4_23640001 chr2R_23640001 RAL-563 487 chr2R 23784470 23784504 chr2R 23784548 23784582 6 78 3.0 2.5 2.8 1.6 112 chr2R 23784470 intron CG9850 - chr2R 23784526 intron CG9850 - chr2R 23784582 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-563 488 chr2R 23817214 23817240 chr2R 23817435 23817461 9 221 0.5 0.5 0.5 6.0 247 chr2R 23817214 intron CG4797 - chr2R 23817338 intron CG4797 - chr2R 23817461 intron CG4797 - chr2R_9_23815001 chr2R_23815001 RAL-563 489 chr2R 23914300 23914332 chr2R 23921923 23921956 412 5 7617 1.5 4.5 3.0 1.2 7656 chr2R 23914300 exon kcc + chr2R 23918128 intron kcc + chr2R 23921956 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-563 490 chr2R 23986515 23986548 chr2R 23986595 23986628 4 80 2.5 4.0 3.2 1.0 113 chr2R 23986515 intron Phm - chr2R 23986572 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_4_23985001 chr2R_23985001 RAL-563 491 chr2R 24008409 24008442 chr2R 24008495 24008528 5 86 5.0 2.0 3.5 1.1 119 chr2R 24008409 intron Unc-89 - chr2R 24008468 intron Unc-89 - chr2R 24008528 intron Unc-89 - chr2R_5_24005001 chr2R_24005001 RAL-563 492 chr2R 24031379 24031408 chr2R 24031463 24031492 5 84 10.5 8.5 9.5 0.5 113 chr2R 24031379 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031492 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-563 493 chr2R 24037741 24037743 chr2R 24037950 24037952 4 208 6.0 16.5 11.2 0.3 211 chr2R 24037741 5` UTR Not11 - chr2R 24037846 5` UTR Not11 - chr2R 24037952 5` UTR IntS1 + chr2R_4_24035001 chr2R_24035001 RAL-563 494 chr2R 24291952 24291969 chr2R 24292085 24292102 6 133 11.0 5.0 8.0 0.7 150 chr2R 24291952 intergenic not near genes chr2R 24292027 intergenic not near genes chr2R 24292102 intergenic not near genes chr2R_6_24290001 chr2R_24290001 RAL-563 495 chr2R 24336628 24336637 chr2R 24338855 24338865 4 2227 16.0 23.5 19.8 0.2 2237 chr2R 24336628 intergenic not near genes chr2R 24337746 intergenic not near genes chr2R 24338865 intergenic not near genes chr2R_4_24335001 chr2R_24335001 RAL-563 496 chr2R 24353426 24353434 chr2R 24361788 24361796 roo 6 8362 3.0 2.5 2.8 1.6 8370 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357611 intron,intron bs +,CR44811 - chr2R 24361796 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-563 497 chr2R 24383832 24383846 chr2R 24383913 24383926 4 80 1.5 2.5 2.0 1.3 94 chr2R 24383832 intron mAChR-A - chr2R 24383879 intron mAChR-A - chr2R 24383926 exon mAChR-A - chr2R_4_24380001 chr2R_24380001 RAL-563 498 chr2R 24383847 24383855 chr2R 24383910 24383936 8 79 1.0 2.5 1.8 2.9 89 chr2R 24383847 intron mAChR-A - chr2R 24383892 intron mAChR-A - chr2R 24383936 exon mAChR-A - chr2R_8_24380001 chr2R_24380001 RAL-563 499 chr2R 24476320 24476346 chr2R 24476836 24476841 7 510 7.5 6.5 7.0 0.9 521 chr2R 24476320 intron CG13579 + chr2R 24476580 intron CG13579 + chr2R 24476841 intron CG13579 + chr2R_7_24475001 chr2R_24475001 RAL-563 500 chr2R 24609135 24609152 chr2R 24609223 24609241 4 88 6.5 9.5 8.0 0.4 106 chr2R 24609135 exon CG42360 + chr2R 24609188 exon CG42360 + chr2R 24609241 exon CG42360 + chr2R_4_24605001 chr2R_24605001 RAL-563 501 chr2R 24647574 24647616 chr2R 24655144 24655172 412 9 7557 2.0 3.0 2.5 2.6 7598 chr2R 24647574 intergenic not near genes chr2R 24651373 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_9_24650001 chr2R_24650001 RAL-563 502 chr2R 24727883 24727911 chr2R 24735391 24735419 mdg1 15 7507 4.0 3.5 3.8 3.1 7536 chr2R 24727883 intron Mid1 - chr2R 24731651 intron Mid1 - chr2R 24735419 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-563 503 chr2R 24737146 24737175 chr2R 24737266 24737295 9 119 13.5 11.5 12.5 0.7 149 chr2R 24737146 intergenic Mid1 - chr2R 24737220 intergenic not near genes chr2R 24737295 intergenic not near genes chr2R_9_24735001 chr2R_24735001 RAL-563 504 chr2R 24763610 24763643 chr2R 24765586 24765617 G2 16 1974 1.5 1.0 1.2 7.3 2007 chr2R 24763610 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765617 exon CG3894 + chr2R_16_24760001 chr2R_24760001 RAL-563 505 chr2R 25018353 25018369 chr2R 25018454 25018468 5 100 16.5 12.0 14.2 0.3 115 chr2R 25018353 intron uzip + chr2R 25018410 intron uzip + chr2R 25018468 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-563 506 chr2R 25253447 25253476 chr2R 25253522 25253552 4 76 4.0 5.5 4.8 0.7 105 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253500 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-563 507 chr3L 30838 30854 chr3L 30988 31014 4 158 1.5 2.0 1.8 1.4 176 chr3L 30838 intergenic not near genes chr3L 30926 intergenic not near genes chr3L 31014 intergenic not near genes chr3L_4_30001 chr3L_30001 RAL-563 508 chr3L 68979 69015 chr3L 69066 69100 7 87 1.0 2.0 1.5 2.8 121 chr3L 68979 3` UTR Lsp1gamma + chr3L 69040 intergenic Lsp1gamma +,CR44510 + chr3L 69100 intergenic CR44510 +,Lsp1gamma + chr3L_7_65001 chr3L_65001 RAL-563 509 chr3L 93809 93820 chr3L 93888 93901 5 81 3.0 8.0 5.5 0.8 92 chr3L 93809 intergenic not near genes chr3L 93855 intergenic not near genes chr3L 93901 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-563 510 chr3L 456207 456239 chr3L 456286 456318 10 78 1.0 1.5 1.2 4.5 111 chr3L 456207 intron klar - chr3L 456262 intron klar - chr3L 456318 intron klar - chr3L_10_455001 chr3L_455001 RAL-563 511 chr3L 563972 563997 chr3L 564151 564173 4 178 4.0 4.5 4.2 0.8 201 chr3L 563972 intron hipk + chr3L 564072 intron hipk + chr3L 564173 intron hipk + chr3L_4_560001 chr3L_560001 RAL-563 512 chr3L 651410 651423 chr3L 651498 651511 7 88 0.5 6.0 3.2 1.7 101 chr3L 651410 intergenic Gale +,CG3402 - chr3L 651460 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_7_650001 chr3L_650001 RAL-563 513 chr3L 705906 705931 chr3L 706002 706027 5 96 0.5 2.0 1.2 2.3 121 chr3L 705906 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-563 514 chr3L 858001 858028 chr3L 866482 866508 Tirant 17 8473 4.5 3.5 4.0 3.4 8507 chr3L 858001 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866508 5` UTR CG12502 + chr3L_17_860001 chr3L_860001 RAL-563 515 chr3L 925182 925209 chr3L 932607 932634 mdg1 8 7425 1.0 2.0 1.5 3.2 7452 chr3L 925182 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-563 516 chr3L 933881 933890 chr3L 934014 934023 5 133 1.0 3.5 2.2 1.6 142 chr3L 933881 intron Glut1 + chr3L 933952 intron Glut1 + chr3L 934023 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-563 517 chr3L 939774 939801 chr3L 940894 940922 jockey 15 1120 3.0 2.5 2.8 3.9 1148 chr3L 939774 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_15_940001 chr3L_940001 RAL-563 518 chr3L 1015034 1015054 chr3L 1015146 1015165 4 111 2.5 5.0 3.8 0.8 131 chr3L 1015034 intron trio - chr3L 1015100 intron trio - chr3L 1015165 intron trio - chr3L_4_1015001 chr3L_1015001 RAL-563 519 chr3L 1031585 1031610 chr3L 1031652 1031682 8 73 0.0 2.5 1.2 3.6 97 chr3L 1031585 intron trio - chr3L 1031634 intron trio - chr3L 1031682 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-563 520 chr3L 1154131 1154163 chr3L 1163281 1163313 roo 6 9148 1.0 1.5 1.2 2.7 9182 chr3L 1154131 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163313 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-563 521 chr3L 1219596 1219625 chr3L 1227328 1227342 412 13 7731 3.5 3.0 3.2 3.1 7746 chr3L 1219596 intron mwh + chr3L 1223469 intron mwh + chr3L 1227342 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-563 522 chr3L 1268156 1268171 chr3L 1268343 1268357 8 187 2.0 0.0 1.0 4.0 201 chr3L 1268156 intron CG9134 + chr3L 1268256 intron CG9134 + chr3L 1268357 intron CG9134 + chr3L_8_1265001 chr3L_1265001 RAL-563 523 chr3L 1275095 1275121 chr3L 1275173 1275201 5 79 5.5 1.0 3.2 1.2 106 chr3L 1275095 intergenic not near genes chr3L 1275148 intergenic not near genes chr3L 1275201 intergenic not near genes chr3L_5_1275001 chr3L_1275001 RAL-563 524 chr3L 1396744 1396756 chr3L 1396828 1396840 7 82 3.0 4.0 3.5 1.6 96 chr3L 1396744 intron Ptp61F - chr3L 1396792 intron Ptp61F - chr3L 1396840 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-563 525 chr3L 1415777 1415807 chr3L 1415857 1415876 11 79 2.5 1.0 1.8 3.9 99 chr3L 1415777 intron Ptp61F - chr3L 1415826 intron Ptp61F - chr3L 1415876 intron Ptp61F - chr3L_11_1415001 chr3L_1415001 RAL-563 526 chr3L 1506002 1506030 chr3L 1513594 1513624 17.6 7 7596 3.5 1.5 2.5 2.0 7622 chr3L 1506002 intron,intron Psa +,cue - chr3L 1509813 intron,intron Psa +,cue - chr3L 1513624 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-563 527 chr3L 1847314 1847330 chr3L 1847385 1847418 5 83 2.0 2.0 2.0 1.7 104 chr3L 1847314 intergenic not near genes chr3L 1847366 intergenic not near genes chr3L 1847418 intergenic not near genes chr3L_5_1845001 chr3L_1845001 RAL-563 528 chr3L 1848648 1848668 chr3L 1848726 1848746 6 78 1.0 1.5 1.2 2.7 98 chr3L 1848648 intergenic not near genes chr3L 1848697 intergenic not near genes chr3L 1848746 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-563 529 chr3L 2006466 2006500 chr3L 2006546 2006577 9 73 0.5 0.5 0.5 6.0 111 chr3L 2006466 intergenic not near genes chr3L 2006522 intergenic not near genes chr3L 2006577 intergenic not near genes chr3L_9_2005001 chr3L_2005001 RAL-563 530 chr3L 2172849 2172877 chr3L 2172945 2172973 4 96 0.0 1.0 0.5 2.7 124 chr3L 2172849 intergenic CG15820 - chr3L 2172911 intergenic CG15820 - chr3L 2172973 intergenic CG15820 - chr3L_4_2170001 chr3L_2170001 RAL-563 531 chr3L 2218475 2218508 chr3L 2218551 2218584 12 76 2.5 5.0 3.8 2.5 109 chr3L 2218475 intergenic not near genes chr3L 2218530 intergenic not near genes chr3L 2218584 intergenic not near genes chr3L_12_2215001 chr3L_2215001 RAL-563 532 chr3L 2279051 2279069 chr3L 2279198 2279216 4 146 0.0 2.5 1.2 1.8 165 chr3L 2279051 intergenic not near genes chr3L 2279134 intergenic not near genes chr3L 2279216 intergenic not near genes chr3L_4_2275001 chr3L_2275001 RAL-563 533 chr3L 2308002 2308035 chr3L 2308108 2308135 8 104 2.0 5.5 3.8 1.7 133 chr3L 2308002 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308135 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-563 534 chr3L 2447520 2447535 chr3L 2456662 2456691 roo 5 9152 3.5 6.0 4.8 0.9 9171 chr3L 2447520 intron CG45186 + chr3L 2452106 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-563 535 chr3L 2447536 2447537 chr3L 2456661 2456693 roo 4 9148 3.0 6.0 4.5 0.7 9157 chr3L 2447536 intron CG45186 + chr3L 2452114 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-563 536 chr3L 2483616 2483628 chr3L 2483875 2483887 4 259 1.5 0.0 0.8 2.2 271 chr3L 2483616 intron CG45186 + chr3L 2483752 intron CG45186 + chr3L 2483887 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-563 537 chr3L 2533647 2533671 chr3L 2533729 2533753 8 78 5.0 1.0 3.0 2.0 106 chr3L 2533647 intron Spn - chr3L 2533700 intron Spn - chr3L 2533753 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-563 538 chr3L 2561532 2561560 chr3L 2561609 2561637 8 77 1.5 1.5 1.5 3.2 105 chr3L 2561532 intron msn - chr3L 2561584 intron msn - chr3L 2561637 intron msn - chr3L_8_2560001 chr3L_2560001 RAL-563 539 chr3L 2683960 2683979 chr3L 2684035 2684055 5 76 2.0 3.5 2.8 1.3 95 chr3L 2683960 intron Fife - chr3L 2684008 intron Fife - chr3L 2684055 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-563 540 chr3L 2798183 2798210 chr3L 2798502 2798529 6 318 1.0 2.0 1.5 2.4 346 chr3L 2798183 intron CG43444 - chr3L 2798356 intron CG43444 - chr3L 2798529 intron CG43444 - chr3L_6_2795001 chr3L_2795001 RAL-563 541 chr3L 2927839 2927856 chr3L 2936115 2936133 Tirant 6 8276 1.5 0.5 1.0 3.0 8294 chr3L 2927839 intron Shab + chr3L 2931986 intron Shab + chr3L 2936133 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-563 542 chr3L 2987712 2987731 chr3L 2987794 2987813 6 82 0.5 0.0 0.2 5.0 101 chr3L 2987712 intergenic not near genes chr3L 2987762 intergenic not near genes chr3L 2987813 intergenic not near genes chr3L_6_2985001 chr3L_2985001 RAL-563 543 chr3L 3050896 3050927 chr3L 3050983 3050985 9 84 0.5 3.0 1.8 3.2 89 chr3L 3050896 intron CG32485 + chr3L 3050940 intron CG32485 + chr3L 3050985 intron CG32485 + chr3L_9_3050001 chr3L_3050001 RAL-563 544 chr3L 3259621 3259627 chr3L 3259714 3259722 4 94 2.5 1.5 2.0 1.3 101 chr3L 3259621 intron ckd + chr3L 3259672 intron ckd + chr3L 3259722 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-563 545 chr3L 3259633 3259828 chr3L 3259712 3259928 9 89 0.5 1.0 0.8 5.0 295 chr3L 3259633 intron ckd + chr3L 3259780 intron ckd + chr3L 3259928 intron ckd + chr3L_9_3255001 chr3L_3255001 RAL-563 546 chr3L 3281442 3281471 chr3L 3281937 3281952 Doc 9 490 1.0 3.0 2.0 3.0 510 chr3L 3281442 intron CG12017 + chr3L 3281697 intron CG12017 + chr3L 3281952 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-563 547 chr3L 3475075 3475112 chr3L 3475519 3475556 jockey 22 444 3.0 2.5 2.8 5.8 481 chr3L 3475075 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_22_3475001 chr3L_3475001 RAL-563 548 chr3L 3601301 3601328 chr3L 3606612 3606639 copia 6 5310 4.5 5.5 5.0 1.0 5338 chr3L 3601301 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-563 549 chr3L 3798058 3798073 chr3L 3798123 3798150 5 76 1.0 3.0 2.0 1.7 92 chr3L 3798058 intron CG32264 - chr3L 3798104 intron CG32264 - chr3L 3798150 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-563 550 chr3L 4356287 4356312 chr3L 4356367 4356393 6 80 0.5 0.0 0.2 5.0 106 chr3L 4356287 intron Cip4 - chr3L 4356340 intron Cip4 - chr3L 4356393 intron Cip4 - chr3L_6_4355001 chr3L_4355001 RAL-563 551 chr3L 4441839 4441863 chr3L 4441917 4441937 10 78 4.0 1.0 2.5 2.9 98 chr3L 4441839 intergenic not near genes chr3L 4441888 intergenic not near genes chr3L 4441937 intergenic not near genes chr3L_10_4440001 chr3L_4440001 RAL-563 552 chr3L 4674155 4674179 chr3L 4674241 4674265 7 85 0.5 0.0 0.2 5.8 110 chr3L 4674155 intron axo - chr3L 4674210 intron axo - chr3L 4674265 intron axo - chr3L_7_4670001 chr3L_4670001 RAL-563 553 chr3L 4726428 4726458 chr3L 4726509 4726538 6 81 1.0 1.5 1.2 2.7 110 chr3L 4726428 intron RhoGEF64C + chr3L 4726483 intron RhoGEF64C + chr3L 4726538 intron RhoGEF64C + chr3L_6_4725001 chr3L_4725001 RAL-563 554 chr3L 4858308 4858332 chr3L 4858398 4858422 7 88 2.0 3.5 2.8 1.8 114 chr3L 4858308 intergenic not near genes chr3L 4858365 intergenic not near genes chr3L 4858422 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-563 555 chr3L 5053219 5053250 chr3L 5053687 5053718 4 468 2.0 1.0 1.5 1.6 499 chr3L 5053219 intron Con - chr3L 5053468 intron Con - chr3L 5053718 intron Con - chr3L_4_5050001 chr3L_5050001 RAL-563 556 chr3L 5085035 5085059 chr3L 5085109 5085132 12 75 3.5 2.0 2.8 3.2 97 chr3L 5085035 intergenic not near genes chr3L 5085084 intergenic not near genes chr3L 5085132 intergenic not near genes chr3L_12_5085001 chr3L_5085001 RAL-563 557 chr3L 5192987 5193020 chr3L 5193070 5193104 7 83 1.5 3.5 2.5 2.0 117 chr3L 5192987 intron shep - chr3L 5193046 intron shep - chr3L 5193104 intron shep - chr3L_7_5190001 chr3L_5190001 RAL-563 558 chr3L 5234165 5234181 chr3L 5234250 5234266 9 86 4.0 2.5 3.2 2.1 101 chr3L 5234165 intron shep - chr3L 5234216 intron shep - chr3L 5234266 intron shep - chr3L_9_5230001 chr3L_5230001 RAL-563 559 chr3L 5388200 5388213 chr3L 5388524 5388537 4 324 8.5 4.0 6.2 0.6 337 chr3L 5388200 intergenic not near genes chr3L 5388368 intergenic not near genes chr3L 5388537 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-563 560 chr3L 5537162 5537182 chr3L 5537269 5537289 7 107 1.5 0.5 1.0 3.5 127 chr3L 5537162 intergenic not near genes chr3L 5537226 intergenic not near genes chr3L 5537289 intergenic not near genes chr3L_7_5535001 chr3L_5535001 RAL-563 561 chr3L 5582009 5582021 chr3L 5582086 5582098 7 77 2.0 0.0 1.0 3.5 89 chr3L 5582009 intergenic not near genes chr3L 5582054 intergenic not near genes chr3L 5582098 intergenic not near genes chr3L_7_5580001 chr3L_5580001 RAL-563 562 chr3L 5926324 5926344 chr3L 5926503 5926534 BS 16 181 3.0 3.5 3.2 3.8 210 chr3L 5926324 intron Vap-33B + chr3L 5926429 intron Vap-33B + chr3L 5926534 intron Vap-33B + chr3L_16_5925001 chr3L_5925001 RAL-563 563 chr3L 5983832 5983867 chr3L 5983953 5983988 5 121 10.0 0.0 5.0 0.8 156 chr3L 5983832 3` UTR CR45439 - chr3L 5983910 intergenic CR45439 -,CR45440 - chr3L 5983988 intergenic CR45439 -,CR45440 - chr3L_5_5980001 chr3L_5980001 RAL-563 564 chr3L 6335010 6335024 chr3L 6335481 6335495 297 5 471 2.0 3.0 2.5 1.4 485 chr3L 6335010 intron CG13300 - chr3L 6335252 intron CG13300 - chr3L 6335495 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-563 565 chr3L 6855934 6855954 chr3L 6860718 6860738 Doc 4 4784 2.0 3.5 2.8 1.1 4804 chr3L 6855934 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-563 566 chr3L 6934340 6934362 chr3L 6934451 6934473 5 111 1.5 5.0 3.2 1.2 133 chr3L 6934340 exon CG14820 + chr3L 6934406 intron CG14820 + chr3L 6934473 intron CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-563 567 chr3L 6974503 6974525 chr3L 6974604 6974618 6 99 0.0 3.5 1.8 2.1 115 chr3L 6974503 intron Galphai - chr3L 6974560 intron Galphai - chr3L 6974618 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-563 568 chr3L 7079607 7079636 chr3L 7079681 7079713 8 76 0.5 0.0 0.2 6.7 106 chr3L 7079607 intergenic not near genes chr3L 7079660 intergenic not near genes chr3L 7079713 intergenic not near genes chr3L_8_7075001 chr3L_7075001 RAL-563 569 chr3L 7150880 7150891 chr3L 7150956 7150967 4 76 1.5 0.5 1.0 2.0 87 chr3L 7150880 intron corn - chr3L 7150924 intron corn - chr3L 7150967 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-563 570 chr3L 7318183 7318219 chr3L 7318277 7318314 6 95 1.0 1.0 1.0 3.0 131 chr3L 7318183 intergenic not near genes chr3L 7318248 intergenic not near genes chr3L 7318314 intergenic not near genes chr3L_6_7315001 chr3L_7315001 RAL-563 571 chr3L 7388237 7388241 chr3L 7388345 7388349 4 108 2.0 0.0 1.0 2.0 112 chr3L 7388237 intergenic CG8564 - chr3L 7388293 intergenic CG8564 - chr3L 7388349 intergenic CG8564 - chr3L_4_7385001 chr3L_7385001 RAL-563 572 chr3L 7626934 7626964 chr3L 7627013 7627049 9 82 2.5 0.0 1.2 4.1 115 chr3L 7626934 intron CG33275 + chr3L 7626992 intron CG33275 + chr3L 7627049 intron CG33275 + chr3L_9_7625001 chr3L_7625001 RAL-563 573 chr3L 7710955 7710975 chr3L 7711127 7711147 8 172 4.0 4.5 4.2 1.5 192 chr3L 7710955 intron,exon CG32373 +,Ank2 - chr3L 7711051 intron,intron CG32373 +,Ank2 - chr3L 7711147 intron,intron CG32373 +,Ank2 - chr3L_8_7710001 chr3L_7710001 RAL-563 574 chr3L 7869666 7869673 chr3L 7869744 7869752 4 79 2.5 6.5 4.5 0.7 86 chr3L 7869666 exon CG32365 + chr3L 7869709 exon CG32365 + chr3L 7869752 exon CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-563 575 chr3L 7886529 7886540 chr3L 7889044 7889058 Stalker4 6 2517 1.0 1.5 1.2 2.7 2529 chr3L 7886529 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889058 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-563 576 chr3L 7985363 7985394 chr3L 7987691 7987722 NOF 4 2328 0.5 2.5 1.5 1.6 2359 chr3L 7985363 intron nmo + chr3L 7986542 intron nmo + chr3L 7987722 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-563 577 chr3L 8043311 8043328 chr3L 8043392 8043409 4 81 0.5 1.5 1.0 2.0 98 chr3L 8043311 intron nmo + chr3L 8043360 intron nmo + chr3L 8043409 intron nmo + chr3L_4_8040001 chr3L_8040001 RAL-563 578 chr3L 8248304 8248325 chr3L 8248392 8248410 4 87 3.0 3.5 3.2 1.0 106 chr3L 8248304 intron Dscam4 + chr3L 8248357 intron Dscam4 + chr3L 8248410 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-563 579 chr3L 8295792 8295826 chr3L 8295950 8295984 15 158 1.0 3.5 2.2 4.7 192 chr3L 8295792 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295984 intergenic not near genes chr3L_15_8295001 chr3L_8295001 RAL-563 580 chr3L 8498304 8498310 chr3L 8505771 8505777 blood 4 7467 0.0 2.0 1.0 2.0 7473 chr3L 8498304 intron CG43163 - chr3L 8502040 intron CG43163 - chr3L 8505777 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-563 581 chr3L 8844607 8844633 chr3L 8844692 8844718 12 85 4.0 3.0 3.5 2.7 111 chr3L 8844607 intron dally + chr3L 8844662 intron dally + chr3L 8844718 intron dally + chr3L_12_8840001 chr3L_8840001 RAL-563 582 chr3L 8849210 8849244 chr3L 8849290 8849324 9 79 4.0 0.5 2.2 2.8 114 chr3L 8849210 intron dally + chr3L 8849267 intron dally + chr3L 8849324 intron dally + chr3L_9_8845001 chr3L_8845001 RAL-563 583 chr3L 8899361 8899379 chr3L 8904047 8904065 6 4686 19.5 20.0 19.8 0.3 4704 chr3L 8899361 intron TrpA1 - chr3L 8901713 intron TrpA1 - chr3L 8904065 intron TrpA1 - chr3L_6_8900001 chr3L_8900001 RAL-563 584 chr3L 9003801 9003806 chr3L 9004071 9004076 4 270 1.5 2.0 1.8 1.4 275 chr3L 9003801 intergenic not near genes chr3L 9003938 intergenic not near genes chr3L 9004076 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-563 585 chr3L 9013691 9013692 chr3L 18417066 18417066 10 9403375 21.5 9.0 15.2 0.6 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_10_13715001 chr3L_13715001 RAL-563 586 chr3L 9076925 9076957 chr3L 9084485 9084517 412 7 7560 4.0 0.5 2.2 2.2 7592 chr3L 9076925 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084517 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-563 587 chr3L 9109925 9109958 chr3L 9110014 9110048 13 90 1.0 1.5 1.2 5.9 123 chr3L 9109925 intron bol - chr3L 9109986 intron bol - chr3L 9110048 intron bol - chr3L_13_9105001 chr3L_9105001 RAL-563 588 chr3L 9129202 9129220 chr3L 9129282 9129300 4 80 0.0 1.5 0.8 2.2 98 chr3L 9129202 intron bol - chr3L 9129251 intron bol - chr3L 9129300 intron bol - chr3L_4_9125001 chr3L_9125001 RAL-563 589 chr3L 9130559 9130579 chr3L 9134319 9134340 412 6 3760 4.5 3.0 3.8 1.2 3781 chr3L 9130559 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-563 590 chr3L 9443518 9443540 chr3L 9445309 9445331 S-element 6 1791 0.0 0.5 0.2 5.0 1813 chr3L 9443518 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_6_9440001 chr3L_9440001 RAL-563 591 chr3L 9510949 9510956 chr3L 9511027 9511035 5 79 0.0 6.5 3.2 1.2 86 chr3L 9510949 intron RpS9 - chr3L 9510992 intron RpS9 - chr3L 9511035 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-563 592 chr3L 9575914 9575932 chr3L 9580992 9581009 jockey 10 5077 6.0 4.0 5.0 1.7 5095 chr3L 9575914 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581009 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-563 593 chr3L 9637856 9637887 chr3L 9637938 9637969 9 82 1.5 1.5 1.5 3.6 113 chr3L 9637856 intron fry - chr3L 9637912 intron fry - chr3L 9637969 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-563 594 chr3L 9639041 9639060 chr3L 9639126 9639145 4 85 0.0 0.0 0.0 4.0 104 chr3L 9639041 intron fry - chr3L 9639093 intron fry - chr3L 9639145 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-563 595 chr3L 9646829 9646832 chr3L 9646927 9646930 4 98 1.0 2.5 1.8 1.4 101 chr3L 9646829 intron,intron fry -,CG33696 + chr3L 9646880 intron,intron fry -,CG33696 + chr3L 9646930 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-563 596 chr3L 9918880 9918883 chr3L 9918975 9918977 4 94 12.0 1.5 6.8 0.5 97 chr3L 9918880 intron CG34356 + chr3L 9918928 intron CG34356 + chr3L 9918977 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-563 597 chr3L 9918884 9918910 chr3L 9918974 9919001 13 94 2.0 1.5 1.8 4.6 117 chr3L 9918884 intron CG34356 + chr3L 9918942 intron CG34356 + chr3L 9919001 intron CG34356 + chr3L_13_9915001 chr3L_9915001 RAL-563 598 chr3L 9947033 9947044 chr3L 9947143 9947147 7 108 5.0 1.5 3.2 1.7 114 chr3L 9947033 intron CG34356 + chr3L 9947090 intron CG34356 + chr3L 9947147 intron CG34356 + chr3L_7_9945001 chr3L_9945001 RAL-563 599 chr3L 10003174 10003180 chr3L 10003270 10003276 5 96 2.0 3.5 2.8 1.3 102 chr3L 10003174 intron dpr6 + chr3L 10003225 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-563 600 chr3L 10104807 10104821 chr3L 10104891 10104906 7 86 1.0 3.5 2.2 2.2 99 chr3L 10104807 intron dpr6 + chr3L 10104856 intron dpr6 + chr3L 10104906 intron dpr6 + chr3L_7_10100001 chr3L_10100001 RAL-563 601 chr3L 10223789 10223802 chr3L 10223870 10223870 4 79 0.5 4.0 2.2 1.2 81 chr3L 10223789 intron scramb1 - chr3L 10223830 intron scramb1 - chr3L 10223870 exon scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-563 602 chr3L 10310352 10310380 chr3L 10310449 10310477 5 97 1.0 0.5 0.8 2.8 125 chr3L 10310352 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310477 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-563 603 chr3L 10314628 10314649 chr3L 10314704 10314725 6 74 2.0 2.0 2.0 2.0 97 chr3L 10314628 intergenic not near genes chr3L 10314676 intergenic not near genes chr3L 10314725 intergenic not near genes chr3L_6_10310001 chr3L_10310001 RAL-563 604 chr3L 10348656 10348673 chr3L 10348773 10348790 6 117 4.5 0.0 2.2 1.9 134 chr3L 10348656 intron CR44327 + chr3L 10348723 intron CR44327 + chr3L 10348790 intron CR44327 + chr3L_6_10345001 chr3L_10345001 RAL-563 605 chr3L 10417572 10417606 chr3L 10417649 10417683 10 76 3.5 4.0 3.8 2.1 111 chr3L 10417572 intergenic not near genes chr3L 10417628 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-563 606 chr3L 10509482 10509514 chr3L 10509611 10509612 6 119 1.0 0.5 0.8 3.3 130 chr3L 10509482 intron A2bp1 + chr3L 10509547 intron A2bp1 + chr3L 10509612 intron A2bp1 + chr3L_6_10505001 chr3L_10505001 RAL-563 607 chr3L 10551466 10551492 chr3L 10551553 10551579 4 87 0.0 0.0 0.0 4.0 113 chr3L 10551466 intron A2bp1 + chr3L 10551522 intron A2bp1 + chr3L 10551579 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-563 608 chr3L 10678723 10678746 chr3L 10678806 10678829 7 83 2.5 1.0 1.8 2.5 106 chr3L 10678723 intron simj + chr3L 10678776 intron simj + chr3L 10678829 intron simj + chr3L_7_10675001 chr3L_10675001 RAL-563 609 chr3L 10762832 10762864 chr3L 10762916 10762948 8 84 2.5 1.5 2.0 2.7 116 chr3L 10762832 intergenic not near genes chr3L 10762890 intergenic not near genes chr3L 10762948 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-563 610 chr3L 11087057 11087088 chr3L 11088846 11088877 S-element 13 1789 0.5 2.5 1.5 5.2 1820 chr3L 11087057 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_13_11085001 chr3L_11085001 RAL-563 611 chr3L 11127924 11127946 chr3L 11128027 11128044 4 100 3.0 0.5 1.8 1.4 120 chr3L 11127924 intron CG42575 + chr3L 11127984 intron CG42575 + chr3L 11128044 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-563 612 chr3L 11303052 11303055 chr3L 11303138 11303141 4 86 0.5 0.0 0.2 3.3 89 chr3L 11303052 intergenic not near genes chr3L 11303096 intergenic not near genes chr3L 11303141 intergenic not near genes chr3L_4_11300001 chr3L_11300001 RAL-563 613 chr3L 11389742 11389750 chr3L 11389815 11389835 5 79 3.5 0.0 1.8 1.8 93 chr3L 11389742 intergenic not near genes chr3L 11389788 intergenic not near genes chr3L 11389835 intergenic not near genes chr3L_5_11385001 chr3L_11385001 RAL-563 614 chr3L 11449374 11449384 chr3L 11449435 11449470 6 73 3.0 1.0 2.0 2.0 96 chr3L 11449374 intergenic not near genes chr3L 11449422 intergenic not near genes chr3L 11449470 intergenic not near genes chr3L_6_11445001 chr3L_11445001 RAL-563 615 chr3L 11474631 11474652 chr3L 11474716 11474741 4 88 1.5 0.5 1.0 2.0 110 chr3L 11474631 intergenic Vha16-2 + chr3L 11474686 intergenic Vha16-2 + chr3L 11474741 intergenic Vha16-2 + chr3L_4_11470001 chr3L_11470001 RAL-563 616 chr3L 11574128 11574160 chr3L 11574220 11574252 13 91 1.0 3.0 2.0 4.3 124 chr3L 11574128 exon CG33490 - chr3L 11574190 exon CG33490 - chr3L 11574252 exon CG33490 - chr3L_13_11570001 chr3L_11570001 RAL-563 617 chr3L 11587920 11587955 chr3L 11587996 11588031 5 76 1.0 0.5 0.8 2.8 111 chr3L 11587920 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588031 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-563 618 chr3L 11723086 11723102 chr3L 11727881 11727897 Doc 4 4794 2.0 1.0 1.5 1.6 4811 chr3L 11723086 3` UTR Bmcp + chr3L 11725492 intron Bmcp + chr3L 11727897 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-563 619 chr3L 11744011 11744038 chr3L 11744119 11744146 4 106 2.0 0.0 1.0 2.0 135 chr3L 11744011 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-563 620 chr3L 11864556 11864579 chr3L 11865850 11865874 pogo 4 1295 3.0 0.5 1.8 1.4 1318 chr3L 11864556 intron CG44837 - chr3L 11865215 intron CG44837 - chr3L 11865874 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-563 621 chr3L 11872657 11872678 chr3L 11872998 11873019 6 342 3.5 1.0 2.2 1.9 362 chr3L 11872657 intron CG44837 - chr3L 11872838 intron CG44837 - chr3L 11873019 intron CG44837 - chr3L_6_11870001 chr3L_11870001 RAL-563 622 chr3L 11906430 11906455 chr3L 11906499 11906499 7 67 2.5 0.5 1.5 2.8 69 chr3L 11906430 intron CG44837 - chr3L 11906464 intron CG44837 - chr3L 11906499 intron CG44837 - chr3L_7_11905001 chr3L_11905001 RAL-563 623 chr3L 11938871 11938893 chr3L 11938960 11938966 6 86 3.5 1.0 2.2 1.9 95 chr3L 11938871 5` UTR CG44837 - chr3L 11938918 intergenic CG44837 - chr3L 11938966 intergenic CG44837 - chr3L_6_11935001 chr3L_11935001 RAL-563 624 chr3L 12300834 12300842 chr3L 12300920 12300929 4 87 1.5 0.5 1.0 2.0 95 chr3L 12300834 intergenic CR44550 + chr3L 12300882 intergenic CR44550 + chr3L 12300929 intergenic CR44550 + chr3L_4_12300001 chr3L_12300001 RAL-563 625 chr3L 12327134 12327158 chr3L 12327247 12327272 20 113 3.5 2.0 2.8 5.3 138 chr3L 12327134 intergenic not near genes chr3L 12327203 intergenic not near genes chr3L 12327272 intergenic not near genes chr3L_20_12325001 chr3L_12325001 RAL-563 626 chr3L 12341264 12341297 chr3L 12341779 12341812 11 514 3.5 1.0 2.2 3.4 548 chr3L 12341264 exon CrzR - chr3L 12341538 intron CrzR - chr3L 12341812 intron CrzR - chr3L_11_12340001 chr3L_12340001 RAL-563 627 chr3L 12369539 12369551 chr3L 12369629 12369641 4 90 0.5 0.5 0.5 2.7 102 chr3L 12369539 intron Ncc69 - chr3L 12369590 intron Ncc69 - chr3L 12369641 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-563 628 chr3L 12446277 12446292 chr3L 12446354 12446369 5 75 1.5 2.5 2.0 1.7 92 chr3L 12446277 intergenic not near genes chr3L 12446323 intergenic not near genes chr3L 12446369 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-563 629 chr3L 12656304 12656319 chr3L 12656390 12656406 4 86 6.0 3.5 4.8 0.7 102 chr3L 12656304 intergenic not near genes chr3L 12656355 intergenic not near genes chr3L 12656406 intergenic not near genes chr3L_4_12655001 chr3L_12655001 RAL-563 630 chr3L 12874923 12874959 chr3L 12877215 12877251 jockey 5 2292 1.0 0.0 0.5 3.3 2328 chr3L 12874923 intergenic not near genes chr3L 12876087 intergenic not near genes chr3L 12877251 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-563 631 chr3L 12894801 12894816 chr3L 12894877 12894894 5 76 3.0 4.0 3.5 1.1 93 chr3L 12894801 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-563 632 chr3L 12919297 12919302 chr3L 12924744 12924775 Rt1c 7 5469 6.5 2.5 4.5 1.3 5478 chr3L 12919297 intergenic not near genes chr3L 12922036 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-563 633 chr3L 12955426 12955453 chr3L 12955517 12955544 12 90 5.5 3.0 4.2 2.3 118 chr3L 12955426 intergenic not near genes chr3L 12955485 intergenic not near genes chr3L 12955544 intergenic not near genes chr3L_12_12955001 chr3L_12955001 RAL-563 634 chr3L 12957796 12957812 chr3L 12962278 12962294 copia 4 4482 1.0 2.0 1.5 1.6 4498 chr3L 12957796 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962294 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-563 635 chr3L 12978546 12978779 chr3L 12978629 12978858 6 76 4.0 3.0 3.5 1.3 312 chr3L 12978546 intergenic not near genes chr3L 12978702 intergenic not near genes chr3L 12978858 intergenic not near genes chr3L_6_12975001 chr3L_12975001 RAL-563 636 chr3L 13007699 13007727 chr3L 13007771 13007806 8 78 2.0 2.0 2.0 2.7 107 chr3L 13007699 exon CG11263 + chr3L 13007752 3` UTR CG11263 + chr3L 13007806 3` UTR CG11263 + chr3L_8_13005001 chr3L_13005001 RAL-563 637 chr3L 13050584 13050592 chr3L 13050663 13050671 4 79 0.5 4.0 2.2 1.2 87 chr3L 13050584 intergenic not near genes chr3L 13050628 intergenic not near genes chr3L 13050671 intergenic not near genes chr3L_4_13050001 chr3L_13050001 RAL-563 638 chr3L 13055983 13056012 chr3L 13056070 13056099 5 87 2.5 4.0 3.2 1.2 116 chr3L 13055983 intergenic not near genes chr3L 13056041 intergenic not near genes chr3L 13056099 intergenic not near genes chr3L_5_13055001 chr3L_13055001 RAL-563 639 chr3L 13317792 13317822 chr3L 13317882 13317912 6 90 5.0 0.5 2.8 1.6 120 chr3L 13317792 intergenic not near genes chr3L 13317852 intergenic not near genes chr3L 13317912 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-563 640 chr3L 13330557 13330589 chr3L 13331117 13331149 7 559 2.0 1.5 1.8 2.5 592 chr3L 13330557 intergenic not near genes chr3L 13330853 intergenic not near genes chr3L 13331149 intergenic not near genes chr3L_7_13330001 chr3L_13330001 RAL-563 641 chr3L 13338348 13338361 chr3L 13338463 13338476 4 115 3.0 0.5 1.8 1.4 128 chr3L 13338348 intergenic not near genes chr3L 13338412 intergenic not near genes chr3L 13338476 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-563 642 chr3L 13525166 13525175 chr3L 13532957 13532971 roo 4 7794 3.5 5.5 4.5 0.7 7805 chr3L 13525166 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532971 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-563 643 chr3L 13596714 13596741 chr3L 13596823 13596851 7 109 1.5 1.5 1.5 2.8 137 chr3L 13596714 intron bru-3 - chr3L 13596782 intron bru-3 - chr3L 13596851 intron bru-3 - chr3L_7_13595001 chr3L_13595001 RAL-563 644 chr3L 13648891 13648912 chr3L 13648981 13649002 17 88 1.5 5.0 3.2 4.0 111 chr3L 13648891 intron bru-3 - chr3L 13648946 intron bru-3 - chr3L 13649002 intron bru-3 - chr3L_17_13645001 chr3L_13645001 RAL-563 645 chr3L 13888748 13888753 chr3L 13888896 13888901 4 148 1.0 6.0 3.5 0.9 153 chr3L 13888748 intron dysc - chr3L 13888824 intron dysc - chr3L 13888901 intron dysc - chr3L_4_13885001 chr3L_13885001 RAL-563 646 chr3L 13931351 13931359 chr3L 13931456 13931464 4 105 1.0 3.5 2.2 1.2 113 chr3L 13931351 intron Gl + chr3L 13931408 intron Gl + chr3L 13931464 intron Gl + chr3L_4_13930001 chr3L_13930001 RAL-563 647 chr3L 14282593 14282598 chr3L 14282670 14282678 4 79 0.0 2.0 1.0 2.0 85 chr3L 14282593 intron fz + chr3L 14282636 intron fz + chr3L 14282678 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-563 648 chr3L 14312038 14312057 chr3L 14316852 14316870 X-element 4 4814 3.5 2.0 2.8 1.1 4832 chr3L 14312038 exon fz + chr3L 14314454 intron fz + chr3L 14316870 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-563 649 chr3L 14533903 14533928 chr3L 14533975 14533991 6 77 1.0 2.5 1.8 2.1 88 chr3L 14533903 intron bbg - chr3L 14533947 intron bbg - chr3L 14533991 intron bbg - chr3L_6_14530001 chr3L_14530001 RAL-563 650 chr3L 14646973 14646987 chr3L 14647040 14647065 4 69 0.0 5.5 2.8 1.1 92 chr3L 14646973 intron dlp + chr3L 14647019 intron dlp + chr3L 14647065 intron dlp + chr3L_4_14645001 chr3L_14645001 RAL-563 651 chr3L 14721181 14721209 chr3L 14723024 14723035 Rt1c 10 1840 3.0 2.0 2.5 2.9 1854 chr3L 14721181 intron ome + chr3L 14722108 intron ome + chr3L 14723035 intron ome + chr3L_10_14720001 chr3L_14720001 RAL-563 652 chr3L 14741159 14741167 chr3L 14741237 14741245 4 76 1.5 5.5 3.5 0.9 86 chr3L 14741159 intron ome + chr3L 14741202 intron ome + chr3L 14741245 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-563 653 chr3L 14840357 14840389 chr3L 14840462 14840494 13 102 2.0 6.5 4.2 2.5 137 chr3L 14840357 intron CG17839 + chr3L 14840426 intron CG17839 + chr3L 14840494 intron CG17839 + chr3L_13_14840001 chr3L_14840001 RAL-563 654 chr3L 15053429 15053445 chr3L 15053767 15053784 4 339 0.0 5.0 2.5 1.1 355 chr3L 15053429 intron Sytbeta - chr3L 15053606 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053784 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-563 655 chr3L 15085049 15085079 chr3L 15086215 15086245 1360 5 1166 0.5 3.0 1.8 1.8 1196 chr3L 15085049 intron cp309 - chr3L 15085647 intron cp309 - chr3L 15086245 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-563 656 chr3L 15418037 15418069 chr3L 15418121 15418141 6 81 4.5 5.5 5.0 1.0 104 chr3L 15418037 intergenic not near genes chr3L 15418089 intergenic not near genes chr3L 15418141 intergenic not near genes chr3L_6_15415001 chr3L_15415001 RAL-563 657 chr3L 15423770 15423779 chr3L 15426614 15426623 opus 4 2844 0.5 1.5 1.0 2.0 2853 chr3L 15423770 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426623 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-563 658 chr3L 15444665 15444679 chr3L 15444753 15444773 8 85 4.5 4.0 4.2 1.5 108 chr3L 15444665 intergenic not near genes chr3L 15444719 intergenic not near genes chr3L 15444773 intergenic not near genes chr3L_8_15440001 chr3L_15440001 RAL-563 659 chr3L 15482317 15482348 chr3L 15482419 15482450 12 102 0.0 1.0 0.5 8.0 133 chr3L 15482317 intergenic not near genes chr3L 15482384 intergenic not near genes chr3L 15482450 intergenic not near genes chr3L_12_15480001 chr3L_15480001 RAL-563 660 chr3L 15489065 15489085 chr3L 15489342 15489365 7 279 2.0 2.0 2.0 2.3 300 chr3L 15489065 intergenic not near genes chr3L 15489215 intergenic not near genes chr3L 15489365 intergenic not near genes chr3L_7_15485001 chr3L_15485001 RAL-563 661 chr3L 15511979 15512004 chr3L 15512057 15512081 5 78 1.5 1.5 1.5 2.0 102 chr3L 15511979 intron Eip71CD + chr3L 15512030 intron Eip71CD + chr3L 15512081 intron Eip71CD + chr3L_5_15510001 chr3L_15510001 RAL-563 662 chr3L 15536619 15536644 chr3L 15536700 15536723 6 80 2.5 0.5 1.5 2.4 104 chr3L 15536619 intron CrebA + chr3L 15536671 intron CrebA + chr3L 15536723 intron CrebA + chr3L_6_15535001 chr3L_15535001 RAL-563 663 chr3L 15633187 15633214 chr3L 15633266 15633294 5 80 1.0 0.0 0.5 3.3 107 chr3L 15633187 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633294 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-563 664 chr3L 15737390 15737403 chr3L 15737480 15737493 4 90 0.0 1.0 0.5 2.7 103 chr3L 15737390 intergenic not near genes chr3L 15737442 intergenic not near genes chr3L 15737493 intergenic not near genes chr3L_4_15735001 chr3L_15735001 RAL-563 665 chr3L 15742964 15742989 chr3L 15743124 15743148 7 159 4.0 0.0 2.0 2.3 184 chr3L 15742964 intergenic not near genes chr3L 15743056 intergenic not near genes chr3L 15743148 intergenic not near genes chr3L_7_15740001 chr3L_15740001 RAL-563 666 chr3L 15770310 15770338 chr3L 15770568 15770582 6 254 0.5 1.0 0.8 3.3 272 chr3L 15770310 intergenic not near genes chr3L 15770446 intergenic not near genes chr3L 15770582 intergenic not near genes chr3L_6_15770001 chr3L_15770001 RAL-563 667 chr3L 15832260 15832278 chr3L 15832341 15832359 6 81 1.0 4.5 2.8 1.6 99 chr3L 15832260 intergenic CG12713 +,dbo + chr3L 15832310 intergenic CG12713 +,dbo + chr3L 15832359 intergenic CG12713 +,dbo + chr3L_6_15830001 chr3L_15830001 RAL-563 668 chr3L 15899225 15899252 chr3L 15899792 15899817 jockey 13 562 3.5 1.0 2.2 4.1 592 chr3L 15899225 intergenic pHCl - chr3L 15899521 intergenic pHCl - chr3L 15899817 intergenic sff - chr3L_13_15895001 chr3L_15895001 RAL-563 669 chr3L 15899253 15899263 chr3L 15899791 15899814 jockey 7 553 2.5 1.0 1.8 2.5 561 chr3L 15899253 intergenic pHCl - chr3L 15899534 intergenic not near genes chr3L 15899814 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-563 670 chr3L 15916316 15916332 chr3L 15916435 15916451 4 119 0.5 3.0 1.8 1.4 135 chr3L 15916316 intron sff - chr3L 15916384 intron sff - chr3L 15916451 intron sff - chr3L_4_15915001 chr3L_15915001 RAL-563 671 chr3L 16036022 16036032 chr3L 16036093 16036114 7 78 1.5 3.0 2.2 2.2 92 chr3L 16036022 exon CG5895 + chr3L 16036068 exon CG5895 + chr3L 16036114 exon CG5895 + chr3L_7_16035001 chr3L_16035001 RAL-563 672 chr3L 16162600 16162630 chr3L 16162680 16162711 6 83 1.0 2.0 1.5 2.4 111 chr3L 16162600 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162711 intron CG5151 - chr3L_6_16160001 chr3L_16160001 RAL-563 673 chr3L 16184092 16184106 chr3L 16188936 16188950 X-element 4 4844 1.5 1.0 1.2 1.8 4858 chr3L 16184092 intergenic not near genes chr3L 16186521 intergenic not near genes chr3L 16188950 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-563 674 chr3L 16212812 16212843 chr3L 16212903 16212932 4 90 0.0 1.0 0.5 2.7 120 chr3L 16212812 intergenic CG13073 - chr3L 16212872 intergenic CG13073 - chr3L 16212932 intergenic CG13073 - chr3L_4_16210001 chr3L_16210001 RAL-563 675 chr3L 16325582 16325602 chr3L 16325670 16325670 5 83 3.0 4.0 3.5 1.1 88 chr3L 16325582 exon CG13040 - chr3L 16325626 exon CG13040 - chr3L 16325670 exon CG13040 - chr3L_5_16325001 chr3L_16325001 RAL-563 676 chr3L 16366770 16366796 chr3L 16366913 16366939 9 139 0.0 3.0 1.5 3.6 169 chr3L 16366770 exon Cpr72Ec - chr3L 16366854 exon Cpr72Ec - chr3L 16366939 exon Cpr72Ec - chr3L_9_16365001 chr3L_16365001 RAL-563 677 chr3L 16443850 16443877 chr3L 16446190 16446210 Doc 7 2338 1.0 3.0 2.0 2.3 2360 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446210 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-563 678 chr3L 16520618 16520634 chr3L 16520747 16520763 7 129 0.0 2.0 1.0 3.5 145 chr3L 16520618 intron CG43373 - chr3L 16520690 intron CG43373 - chr3L 16520763 intron CG43373 - chr3L_7_16520001 chr3L_16520001 RAL-563 679 chr3L 16540061 16540087 chr3L 16540149 16540173 4 87 0.5 1.5 1.0 2.0 112 chr3L 16540061 intron CG43373 - chr3L 16540117 intron CG43373 - chr3L 16540173 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-563 680 chr3L 16659106 16659135 chr3L 16659184 16659213 13 77 1.0 2.5 1.8 4.6 107 chr3L 16659106 intron Baldspot - chr3L 16659160 intron Baldspot - chr3L 16659213 intron Baldspot - chr3L_13_16655001 chr3L_16655001 RAL-563 681 chr3L 16745570 16745595 chr3L 16745647 16745670 17 75 2.5 3.0 2.8 4.5 100 chr3L 16745570 intergenic not near genes chr3L 16745620 intergenic not near genes chr3L 16745670 intergenic not near genes chr3L_17_16745001 chr3L_16745001 RAL-563 682 chr3L 16757641 16757662 chr3L 16757731 16757751 4 90 0.0 0.5 0.2 3.3 110 chr3L 16757641 intergenic not near genes chr3L 16757696 intergenic not near genes chr3L 16757751 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-563 683 chr3L 16772492 16772510 chr3L 16772582 16772600 4 90 3.5 2.0 2.8 1.1 108 chr3L 16772492 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772600 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-563 684 chr3L 16802429 16802461 chr3L 16803615 16803648 10 1187 19.5 23.0 21.2 0.5 1219 chr3L 16802429 intron CG9674 - chr3L 16803038 intron CG9674 - chr3L 16803648 intron CG9674 - chr3L_10_16800001 chr3L_16800001 RAL-563 685 chr3L 16887643 16887663 chr3L 16887718 16887740 4 76 1.0 1.0 1.0 2.0 97 chr3L 16887643 intron Lmpt + chr3L 16887692 intron Lmpt + chr3L 16887740 intron Lmpt + chr3L_4_16885001 chr3L_16885001 RAL-563 686 chr3L 16945726 16945755 chr3L 16954879 16954891 roo 6 9147 4.5 3.0 3.8 1.2 9165 chr3L 16945726 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954891 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-563 687 chr3L 17085018 17085033 chr3L 17094167 17094182 roo 8 9148 2.0 3.0 2.5 2.3 9164 chr3L 17085018 intron Rbp6 - chr3L 17089600 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 RAL-563 688 chr3L 17126017 17126044 chr3L 17126231 17126256 8 214 1.0 0.0 0.5 5.3 239 chr3L 17126017 intron Rbp6 - chr3L 17126136 intron Rbp6 - chr3L 17126256 intron Rbp6 - chr3L_8_17125001 chr3L_17125001 RAL-563 689 chr3L 17129957 17129969 chr3L 17130368 17130380 6 410 6.5 1.0 3.8 1.2 423 chr3L 17129957 intron Rbp6 - chr3L 17130168 intron Rbp6 - chr3L 17130380 intron Rbp6 - chr3L_6_17130001 chr3L_17130001 RAL-563 690 chr3L 17146956 17146990 chr3L 17147038 17147072 8 81 0.5 2.5 1.5 3.2 116 chr3L 17146956 intron Rbp6 - chr3L 17147014 intron Rbp6 - chr3L 17147072 intron Rbp6 - chr3L_8_17145001 chr3L_17145001 RAL-563 691 chr3L 17272245 17272259 chr3L 17272378 17272392 6 133 3.0 0.5 1.8 2.1 147 chr3L 17272245 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272392 intergenic not near genes chr3L_6_17270001 chr3L_17270001 RAL-563 692 chr3L 17510732 17510765 chr3L 17510816 17510849 11 83 4.5 2.0 3.2 2.6 117 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_11_17510001 chr3L_17510001 RAL-563 693 chr3L 17516981 17517009 chr3L 17524539 17524567 412 11 7557 0.0 2.0 1.0 5.5 7586 chr3L 17516981 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524567 3` UTR CG7564 + chr3L_11_17520001 chr3L_17520001 RAL-563 694 chr3L 18002728 18002744 chr3L 18002815 18002831 4 87 0.0 0.0 0.0 4.0 103 chr3L 18002728 intron Eip75B - chr3L 18002780 intron Eip75B - chr3L 18002831 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-563 695 chr3L 18021354 18021389 chr3L 18021446 18021477 13 91 4.0 2.5 3.2 3.1 123 chr3L 18021354 intron Eip75B - chr3L 18021416 intron Eip75B - chr3L 18021477 intron Eip75B - chr3L_13_18020001 chr3L_18020001 RAL-563 696 chr3L 18093963 18093994 chr3L 18094085 18094116 12 122 1.5 0.5 1.0 6.0 153 chr3L 18093963 intron CG13698 - chr3L 18094040 intron CG13698 - chr3L 18094116 intron CG13698 - chr3L_12_18090001 chr3L_18090001 RAL-563 697 chr3L 18106261 18106283 chr3L 18106380 18106396 5 117 0.0 0.0 0.0 5.0 135 chr3L 18106261 intergenic CG13698 -,mRpS26 + chr3L 18106328 intergenic CG13698 -,mRpS26 + chr3L 18106396 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-563 698 chr3L 18119665 18119677 chr3L 18119763 18119775 4 98 0.0 1.5 0.8 2.2 110 chr3L 18119665 intron CG7341 + chr3L 18119720 intron CG7341 + chr3L 18119775 intron CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-563 699 chr3L 18223167 18223185 chr3L 18223250 18223267 4 83 0.0 0.5 0.2 3.3 100 chr3L 18223167 intergenic not near genes chr3L 18223217 intergenic not near genes chr3L 18223267 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-563 700 chr3L 18246967 18246992 chr3L 18247046 18247071 5 79 2.0 1.5 1.8 1.8 104 chr3L 18246967 intergenic not near genes chr3L 18247019 intergenic not near genes chr3L 18247071 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-563 701 chr3L 9013689 9013693 chr3L 18417066 18417066 4 9403374 21.5 9.0 15.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-563 702 chr3L 18456280 18456303 chr3L 18456368 18456391 6 88 1.0 4.0 2.5 1.7 111 chr3L 18456280 intergenic CR44670 - chr3L 18456336 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_6_18455001 chr3L_18455001 RAL-563 703 chr3L 18514906 18514936 chr3L 18520097 18520127 BS 5 5191 0.5 1.5 1.0 2.5 5221 chr3L 18514906 intergenic not near genes chr3L 18517516 intergenic not near genes chr3L 18520127 intergenic not near genes chr3L_5_18515001 chr3L_18515001 RAL-563 704 chr3L 18520562 18520564 chr3L 18520643 18520645 6 80 3.5 1.5 2.5 1.7 83 chr3L 18520562 intergenic not near genes chr3L 18520604 intergenic not near genes chr3L 18520645 intergenic not near genes chr3L_6_18520001 chr3L_18520001 RAL-563 705 chr3L 18520565 18520577 chr3L 18520636 18520658 4 76 2.5 1.5 2.0 1.3 93 chr3L 18520565 intergenic not near genes chr3L 18520612 intergenic not near genes chr3L 18520658 intergenic not near genes chr3L_4_18520001 chr3L_18520001 RAL-563 706 chr3L 18528630 18528639 chr3L 18537791 18537799 roo 4 9160 0.5 0.0 0.2 3.3 9169 chr3L 18528630 intergenic not near genes chr3L 18533214 intergenic not near genes chr3L 18537799 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-563 707 chr3L 18582223 18582245 chr3L 18582308 18582317 6 83 2.0 1.0 1.5 2.4 94 chr3L 18582223 intergenic not near genes chr3L 18582270 intergenic not near genes chr3L 18582317 intergenic not near genes chr3L_6_18580001 chr3L_18580001 RAL-563 708 chr3L 18586570 18586588 chr3L 18586669 18586687 6 98 2.5 1.0 1.8 2.1 117 chr3L 18586570 intergenic not near genes chr3L 18586628 intergenic not near genes chr3L 18586687 intergenic not near genes chr3L_6_18585001 chr3L_18585001 RAL-563 709 chr3L 18656186 18656197 chr3L 18656270 18656270 4 82 3.5 1.5 2.5 1.1 84 chr3L 18656186 intron MYPT-75D + chr3L 18656228 intron MYPT-75D + chr3L 18656270 intron MYPT-75D + chr3L_4_18655001 chr3L_18655001 RAL-563 710 chr3L 18656202 18656217 chr3L 18656269 18656301 5 81 2.0 1.5 1.8 1.8 99 chr3L 18656202 intron MYPT-75D + chr3L 18656252 intron MYPT-75D + chr3L 18656301 intron MYPT-75D + chr3L_5_18655001 chr3L_18655001 RAL-563 711 chr3L 18701137 18701163 chr3L 18701224 18701251 10 88 0.5 2.0 1.2 4.5 114 chr3L 18701137 intergenic not near genes chr3L 18701194 intergenic not near genes chr3L 18701251 intergenic not near genes chr3L_10_18700001 chr3L_18700001 RAL-563 712 chr3L 18772415 18772440 chr3L 18781096 18781121 roo 5 8681 1.5 1.5 1.5 2.0 8706 chr3L 18772415 intron ftz-f1 - chr3L 18776768 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-563 713 chr3L 18832617 18832648 chr3L 18832695 18832726 9 77 0.5 7.5 4.0 1.8 109 chr3L 18832617 intron Indy - chr3L 18832672 intron Indy - chr3L 18832726 intron Indy - chr3L_9_18830001 chr3L_18830001 RAL-563 714 chr3L 18833779 18833812 chr3L 18834943 18834975 1360 11 1163 0.5 0.5 0.5 7.3 1196 chr3L 18833779 intron Indy - chr3L 18834377 intron Indy - chr3L 18834975 intron Indy - chr3L_11_18830001 chr3L_18830001 RAL-563 715 chr3L 18839744 18839763 chr3L 18839827 18839846 5 83 2.0 3.5 2.8 1.3 102 chr3L 18839744 intron Indy - chr3L 18839795 intron Indy - chr3L 18839846 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-563 716 chr3L 19008849 19008872 chr3L 19009187 19009210 jockey 4 338 2.5 7.0 4.8 0.7 361 chr3L 19008849 intron nkd - chr3L 19009030 intron nkd - chr3L 19009210 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-563 717 chr3L 19082038 19082070 chr3L 19082140 19082161 14 101 3.0 5.0 4.0 2.8 123 chr3L 19082038 intron Mkp3 - chr3L 19082100 intron Mkp3 - chr3L 19082161 intron Mkp3 - chr3L_14_19080001 chr3L_19080001 RAL-563 718 chr3L 19115638 19115671 chr3L 19115814 19115845 BS 8 176 3.0 2.0 2.5 2.3 207 chr3L 19115638 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_8_19115001 chr3L_19115001 RAL-563 719 chr3L 19117057 19117064 chr3L 19124493 19124510 mdg1 5 7444 5.5 2.5 4.0 1.0 7453 chr3L 19117057 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124510 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-563 720 chr3L 19117066 19117072 chr3L 19124487 19124511 mdg1 4 7437 4.0 1.0 2.5 1.1 7445 chr3L 19117066 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-563 721 chr3L 19138558 19138585 chr3L 19138639 19138666 5 80 3.0 4.0 3.5 1.1 108 chr3L 19138558 intron CG14082 - chr3L 19138612 intron CG14082 - chr3L 19138666 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-563 722 chr3L 19182392 19182406 chr3L 19182473 19182487 4 81 0.0 3.0 1.5 1.6 95 chr3L 19182392 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182487 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-563 723 chr3L 19202474 19202485 chr3L 19202792 19202803 4 318 3.0 3.0 3.0 1.0 329 chr3L 19202474 intron fz2 - chr3L 19202638 intron fz2 - chr3L 19202803 intron fz2 - chr3L_4_19200001 chr3L_19200001 RAL-563 724 chr3L 19208058 19208088 chr3L 19209432 19209461 Doc 14 1373 1.0 0.0 0.5 9.3 1403 chr3L 19208058 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209461 intron fz2 - chr3L_14_19205001 chr3L_19205001 RAL-563 725 chr3L 19269819 19269844 chr3L 19270023 19270048 4 204 2.0 3.0 2.5 1.1 229 chr3L 19269819 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_4_19265001 chr3L_19265001 RAL-563 726 chr3L 19390730 19390760 chr3L 19390828 19390857 5 97 3.5 2.5 3.0 1.2 127 chr3L 19390730 intron CG32206 - chr3L 19390794 intron CG32206 - chr3L 19390857 intron CG32206 - chr3L_5_19390001 chr3L_19390001 RAL-563 727 chr3L 19417801 19417833 chr3L 19417881 19417913 8 79 2.5 2.5 2.5 2.3 112 chr3L 19417801 intergenic not near genes chr3L 19417857 intergenic not near genes chr3L 19417913 intergenic not near genes chr3L_8_19415001 chr3L_19415001 RAL-563 728 chr3L 19426748 19426776 chr3L 19426826 19426854 14 77 4.5 2.0 3.2 3.3 106 chr3L 19426748 intergenic not near genes chr3L 19426801 intergenic not near genes chr3L 19426854 intergenic not near genes chr3L_14_19425001 chr3L_19425001 RAL-563 729 chr3L 19513406 19513420 chr3L 19513472 19513499 6 74 2.0 4.5 3.2 1.4 93 chr3L 19513406 intergenic not near genes chr3L 19513452 intergenic not near genes chr3L 19513499 intergenic not near genes chr3L_6_19510001 chr3L_19510001 RAL-563 730 chr3L 19848510 19848535 chr3L 19857695 19857726 roo 5 9189 1.5 1.0 1.2 2.3 9216 chr3L 19848510 intron Papss + chr3L 19853118 intron Papss + chr3L 19857726 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-563 731 chr3L 20262807 20262825 chr3L 20262919 20262935 4 111 2.0 5.0 3.5 0.9 128 chr3L 20262807 exon rdgC + chr3L 20262871 intron rdgC + chr3L 20262935 intron rdgC + chr3L_4_20260001 chr3L_20260001 RAL-563 732 chr3L 20386957 20386970 chr3L 20387059 20387072 5 102 2.5 1.0 1.8 1.8 115 chr3L 20386957 intron fbl + chr3L 20387014 intron fbl + chr3L 20387072 intron fbl + chr3L_5_20385001 chr3L_20385001 RAL-563 733 chr3L 21010383 21010398 chr3L 21010490 21010490 4 103 2.0 1.0 1.5 1.6 107 chr3L 21010383 intron skd - chr3L 21010436 intron skd - chr3L 21010490 intron skd - chr3L_4_21010001 chr3L_21010001 RAL-563 734 chr3L 21014913 21014935 chr3L 21023394 21023415 Tirant 8 8476 5.5 3.0 4.2 1.5 8502 chr3L 21014913 intron skd - chr3L 21019164 intron skd - chr3L 21023415 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-563 735 chr3L 21093780 21093810 chr3L 21093892 21093923 16 112 4.0 3.0 3.5 3.6 143 chr3L 21093780 intron ko - chr3L 21093852 intron ko - chr3L 21093923 intron ko - chr3L_16_21090001 chr3L_21090001 RAL-563 736 chr3L 21130574 21130599 chr3L 21130768 21130793 6 194 1.0 2.5 1.8 2.1 219 chr3L 21130574 intron ko - chr3L 21130684 intron ko - chr3L 21130793 intron ko - chr3L_6_21130001 chr3L_21130001 RAL-563 737 chr3L 21151862 21151889 chr3L 21156946 21156962 flea 7 5082 1.5 0.5 1.0 3.5 5100 chr3L 21151862 intron Ac78C - chr3L 21154412 intron Ac78C - chr3L 21156962 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-563 738 chr3L 21243761 21243768 chr3L 21251324 21251331 412 5 7563 1.5 6.0 3.8 1.0 7570 chr3L 21243761 intron Eip78C + chr3L 21247546 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-563 739 chr3L 21306146 21306174 chr3L 21315305 21315332 roo 4 9159 2.5 2.5 2.5 1.1 9186 chr3L 21306146 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310739 intron Pc - chr3L 21315332 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-563 740 chr3L 21362858 21362879 chr3L 21362942 21362963 7 84 3.5 0.5 2.0 2.3 105 chr3L 21362858 intergenic not near genes chr3L 21362910 intergenic not near genes chr3L 21362963 intergenic not near genes chr3L_7_21360001 chr3L_21360001 RAL-563 741 chr3L 21395140 21395175 chr3L 21395224 21395241 11 85 1.5 2.5 2.0 3.7 101 chr3L 21395140 intron rgn + chr3L 21395190 intron rgn + chr3L 21395241 intron rgn + chr3L_11_21395001 chr3L_21395001 RAL-563 742 chr3L 21406993 21407028 chr3L 21407071 21407107 5 79 3.0 2.0 2.5 1.4 114 chr3L 21406993 intron rgn + chr3L 21407050 intron rgn + chr3L 21407107 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-563 743 chr3L 21412743 21412782 chr3L 21412820 21412858 17 77 0.5 1.5 1.0 8.5 115 chr3L 21412743 intron rgn + chr3L 21412800 intron rgn + chr3L 21412858 intron rgn + chr3L_17_21410001 chr3L_21410001 RAL-563 744 chr3L 21415146 21415164 chr3L 21415229 21415247 6 82 1.0 2.0 1.5 2.4 101 chr3L 21415146 intron rgn + chr3L 21415196 intron rgn + chr3L 21415247 intron rgn + chr3L_6_21415001 chr3L_21415001 RAL-563 745 chr3L 21498836 21498869 chr3L 21500472 21500505 1360 7 1633 1.0 1.5 1.2 3.2 1669 chr3L 21498836 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-563 746 chr3L 21749317 21749332 chr3L 21754474 21754492 Doc 5 5159 9.0 1.0 5.0 0.8 5175 chr3L 21749317 intron Syn1 - chr3L 21751904 intron Syn1 - chr3L 21754492 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-563 747 chr3L 21845203 21845239 chr3L 21845344 21845379 11 141 0.5 0.0 0.2 9.2 176 chr3L 21845203 5` UTR mub + chr3L 21845291 intron mub + chr3L 21845379 intron mub + chr3L_11_21845001 chr3L_21845001 RAL-563 748 chr3L 21872951 21872969 chr3L 21873085 21873103 6 133 1.0 2.5 1.8 2.1 152 chr3L 21872951 intron mub + chr3L 21873027 intron mub + chr3L 21873103 intron mub + chr3L_6_21870001 chr3L_21870001 RAL-563 749 chr3L 22016366 22016387 chr3L 22016482 22016502 6 116 1.5 0.5 1.0 3.0 136 chr3L 22016366 intergenic not near genes chr3L 22016434 intergenic not near genes chr3L 22016502 intergenic not near genes chr3L_6_22015001 chr3L_22015001 RAL-563 750 chr3L 22016848 22016860 chr3L 22016989 22017000 4 139 1.0 3.5 2.2 1.2 152 chr3L 22016848 intergenic not near genes chr3L 22016924 intergenic not near genes chr3L 22017000 intergenic not near genes chr3L_4_22015001 chr3L_22015001 RAL-563 751 chr3L 22018144 22018160 chr3L 22018344 22018360 6 200 3.0 4.0 3.5 1.3 216 chr3L 22018144 intergenic not near genes chr3L 22018252 intergenic not near genes chr3L 22018360 intergenic not near genes chr3L_6_22015001 chr3L_22015001 RAL-563 752 chr3L 22023218 22023245 chr3L 22023310 22023337 6 92 1.0 1.5 1.2 2.7 119 chr3L 22023218 intergenic not near genes chr3L 22023278 intergenic not near genes chr3L 22023337 intergenic not near genes chr3L_6_22020001 chr3L_22020001 RAL-563 753 chr3L 22169453 22169467 chr3L 22169546 22169559 4 92 6.5 4.0 5.2 0.6 106 chr3L 22169453 intron olf413 + chr3L 22169506 intron olf413 + chr3L 22169559 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-563 754 chr3L 22309070 22309093 chr3L 22309155 22309177 12 83 0.5 1.0 0.8 6.7 107 chr3L 22309070 intron Ten-m - chr3L 22309124 intron Ten-m - chr3L 22309177 intron Ten-m - chr3L_12_22305001 chr3L_22305001 RAL-563 755 chr3L 22358382 22358408 chr3L 22358468 22358494 8 86 2.5 3.5 3.0 2.0 112 chr3L 22358382 intron Ten-m - chr3L 22358438 intron Ten-m - chr3L 22358494 intron Ten-m - chr3L_8_22355001 chr3L_22355001 RAL-563 756 chr3L 22413877 22413902 chr3L 22413957 22413986 17 83 4.5 3.0 3.8 3.5 109 chr3L 22413877 intergenic not near genes chr3L 22413932 intergenic not near genes chr3L 22413986 intergenic not near genes chr3L_17_22410001 chr3L_22410001 RAL-563 757 chr3L 22475984 22476011 chr3L 22476320 22476347 9 335 0.5 3.0 1.8 3.2 363 chr3L 22475984 intergenic CG11425 + chr3L 22476166 intergenic CG11425 + chr3L 22476347 intergenic not near genes chr3L_9_22475001 chr3L_22475001 RAL-563 758 chr3L 22555783 22555790 chr3L 22563239 22563240 blood 4 7453 2.5 2.0 2.2 1.2 7457 chr3L 22555783 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563240 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-563 759 chr3L 22577619 22577644 chr3L 22582407 22582424 Doc 6 4786 4.5 1.5 3.0 1.5 4805 chr3L 22577619 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582424 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-563 760 chr3L 22684181 22684200 chr3L 22684358 22684377 9 176 4.0 4.5 4.2 1.7 196 chr3L 22684181 intergenic not near genes chr3L 22684279 intergenic not near genes chr3L 22684377 intergenic not near genes chr3L_9_22680001 chr3L_22680001 RAL-563 761 chr3L 22756403 22756428 chr3L 22756480 22756505 10 76 3.0 4.0 3.5 2.2 102 chr3L 22756403 intron SPoCk + chr3L 22756454 intron SPoCk + chr3L 22756505 intron SPoCk + chr3L_10_22755001 chr3L_22755001 RAL-563 762 chr3L 22771640 22771664 chr3L 22771721 22771746 12 76 2.5 3.0 2.8 3.2 106 chr3L 22771640 intron SPoCk + chr3L 22771693 intron SPoCk + chr3L 22771746 intron SPoCk + chr3L_12_22770001 chr3L_22770001 RAL-563 763 chr3L 22838588 22838620 chr3L 22838669 22838701 12 81 7.5 3.5 5.5 1.8 113 chr3L 22838588 intergenic CG11226 + chr3L 22838644 intergenic CG11226 + chr3L 22838701 intergenic not near genes chr3L_12_22835001 chr3L_22835001 RAL-563 764 chr3L 22853695 22853718 chr3L 22853781 22853803 4 86 2.5 4.5 3.5 0.9 108 chr3L 22853695 5` UTR CR43426 + chr3L 22853749 5` UTR CR43426 + chr3L 22853803 5` UTR CR43426 + chr3L_4_22850001 chr3L_22850001 RAL-563 765 chr3L 22897205 22897223 chr3L 22897287 22897306 5 82 3.5 4.0 3.8 1.0 101 chr3L 22897205 intergenic not near genes chr3L 22897256 intergenic not near genes chr3L 22897306 intergenic not near genes chr3L_5_22895001 chr3L_22895001 RAL-563 766 chr3L 19220633 19220637 chr3L 22908066 22908066 7 3687431 20.0 11.5 15.8 0.4 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-563 767 chr3L 22949214 22949219 chr3L 22949302 22949307 4 88 2.0 4.5 3.2 1.0 93 chr3L 22949214 intron Mes2 + chr3L 22949260 intron Mes2 + chr3L 22949307 intron Mes2 + chr3L_4_22945001 chr3L_22945001 RAL-563 768 chr3L 22989874 22989895 chr3L 22996834 22996869 297 9 6972 3.0 0.5 1.8 3.2 6995 chr3L 22989874 intergenic not near genes chr3L 22993372 intergenic not near genes chr3L 22996869 intergenic not near genes chr3L_9_22990001 chr3L_22990001 RAL-563 769 chr3L 23042241 23042256 chr3L 23048988 23049009 gypsy6 6 6751 4.5 5.5 5.0 1.0 6768 chr3L 23042241 intergenic not near genes chr3L 23045625 intergenic not near genes chr3L 23049009 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-563 770 chr3L 23088289 23088308 chr3L 23088371 23088390 4 81 0.0 0.0 0.0 4.0 101 chr3L 23088289 intergenic not near genes chr3L 23088340 intergenic not near genes chr3L 23088390 intergenic not near genes chr3L_4_23085001 chr3L_23085001 RAL-563 771 chr3L 23285629 23285657 chr3L 23286309 23286336 7 676 1.0 1.5 1.2 3.2 707 chr3L 23285629 3` UTR nAChRalpha4 + chr3L 23285982 3` UTR nAChRalpha4 + chr3L 23286336 3` UTR nAChRalpha4 + chr3L_7_23285001 chr3L_23285001 RAL-563 772 chr3L 23450104 23450131 chr3L 23450606 23450633 13 502 4.5 2.5 3.5 2.9 529 chr3L 23450104 intergenic not near genes chr3L 23450368 intergenic not near genes chr3L 23450633 intergenic not near genes chr3L_13_23450001 chr3L_23450001 RAL-563 773 chr3L 24012407 24012438 chr3L 24020745 24020776 roo 4 8331 2.0 0.0 1.0 2.0 8369 chr3L 24012407 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020776 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-563 774 chr3L 24168792 24168820 chr3L 24176120 24176124 ZAM 5 7319 3.0 4.0 3.5 1.1 7332 chr3L 24168792 intron Snap25 + chr3L 24172458 intron Snap25 + chr3L 24176124 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-563 775 chr3R 2534159 2534165 chr3R 2541702 2541707 4 7544 6.0 9.0 7.5 0.5 7548 chr3R 2534159 intergenic not near genes chr3R 2537933 intergenic not near genes chr3R 2541707 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-563 776 chr3R 4063810 4063815 chr3R 4069090 4069095 4 5280 5.0 9.0 7.0 0.5 5285 chr3R 4063810 intergenic not near genes chr3R 4066452 intergenic not near genes chr3R 4069095 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-563 777 chr3R 4063819 4063830 chr3R 4069089 4069110 5 5278 6.0 9.0 7.5 0.6 5291 chr3R 4063819 intergenic not near genes chr3R 4066464 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-563 778 chr3R 4206071 4206102 chr3R 4211646 4211677 mdg3 4 5575 1.0 1.5 1.2 1.8 5606 chr3R 4206071 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-563 779 chr3R 4291725 4291750 chr3R 4291800 4291828 15 71 2.5 6.0 4.2 2.9 103 chr3R 4291725 intron cpx + chr3R 4291776 intron cpx + chr3R 4291828 intron cpx + chr3R_15_4290001 chr3R_4290001 RAL-563 780 chr3R 4408422 4408442 chr3R 4412726 4412746 Juan 5 4304 2.0 1.5 1.8 1.8 4324 chr3R 4408422 intron CG32944 - chr3R 4410584 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-563 781 chr3R 4609556 4609575 chr3R 4610719 4610739 1360 7 1162 2.0 2.0 2.0 2.3 1183 chr3R 4609556 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610739 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-563 782 chr3R 4657296 4657312 chr3R 4657385 4657401 8 88 3.5 1.0 2.2 2.5 105 chr3R 4657296 intron spartin + chr3R 4657348 intron spartin + chr3R 4657401 intron spartin + chr3R_8_4655001 chr3R_4655001 RAL-563 783 chr3R 4683181 4683207 chr3R 4684940 4684949 S-element 7 1757 2.5 5.5 4.0 1.4 1768 chr3R 4683181 intron CG43427 + chr3R 4684065 intron CG43427 + chr3R 4684949 intron CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-563 784 chr3R 4769172 4769188 chr3R 4769242 4769266 7 77 3.5 2.0 2.8 1.8 94 chr3R 4769172 intron,intron atms +,CG44098 - chr3R 4769219 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-563 785 chr3R 4784524 4784540 chr3R 4791397 4791413 4 6873 23.5 22.0 22.8 0.2 6889 chr3R 4784524 exon CG17387 - chr3R 4787968 exon ctrip - chr3R 4791413 exon ctrip - chr3R_4_4785001 chr3R_4785001 RAL-563 786 chr3R 4784517 4784546 chr3R 4791416 4791422 5 6880 22.5 20.5 21.5 0.2 6905 chr3R 4784517 exon CG17387 - chr3R 4787970 exon ctrip - chr3R 4791422 exon ctrip - chr3R_5_4785001 chr3R_4785001 RAL-563 787 chr3R 4966010 4966036 chr3R 4966096 4966128 6 91 0.5 0.0 0.2 5.0 118 chr3R 4966010 intron CG1124 + chr3R 4966069 intron CG1124 + chr3R 4966128 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-563 788 chr3R 5045851 5045874 chr3R 5052953 5052976 HMS-Beagle 5 7102 1.5 3.0 2.2 1.6 7125 chr3R 5045851 intron CR43635 - chr3R 5049414 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-563 789 chr3R 5158157 5158177 chr3R 5158250 5158269 8 93 0.5 2.5 1.5 3.2 112 chr3R 5158157 intron dpr16 + chr3R 5158213 intron dpr16 + chr3R 5158269 intron dpr16 + chr3R_8_5155001 chr3R_5155001 RAL-563 790 chr3R 5191364 5191396 chr3R 5191640 5191672 11 279 21.0 19.5 20.2 0.5 308 chr3R 5191364 intron cno - chr3R 5191518 intron cno - chr3R 5191672 intron cno - chr3R_11_5190001 chr3R_5190001 RAL-563 791 chr3R 5338398 5338429 chr3R 5343575 5343601 Rt1c 8 5176 3.5 6.5 5.0 1.3 5203 chr3R 5338398 intron mtd - chr3R 5341000 intron mtd - chr3R 5343601 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-563 792 chr3R 5626430 5626464 chr3R 5626731 5626764 18 299 2.5 1.5 2.0 6.0 334 chr3R 5626430 intergenic RpL13A + chr3R 5626597 intergenic not near genes chr3R 5626764 intergenic not near genes chr3R_18_5625001 chr3R_5625001 RAL-563 793 chr3R 5746015 5746044 chr3R 5746256 5746261 pogo 7 237 4.0 2.5 3.2 1.7 246 chr3R 5746015 3` UTR Madm + chr3R 5746138 3` UTR Madm + chr3R 5746261 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-563 794 chr3R 5809116 5809132 chr3R 5809356 5809371 pogo 5 240 3.5 3.5 3.5 1.1 255 chr3R 5809116 3` UTR CG11000 + chr3R 5809244 3` UTR CG11000 + chr3R 5809371 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-563 795 chr3R 5947961 5947993 chr3R 5948056 5948088 7 95 3.5 1.5 2.5 2.0 127 chr3R 5947961 intron CG34113 - chr3R 5948024 intron CG34113 - chr3R 5948088 intron CG34113 - chr3R_7_5945001 chr3R_5945001 RAL-563 796 chr3R 6003315 6003339 chr3R 6003401 6003424 11 85 2.5 2.5 2.5 3.1 109 chr3R 6003315 intron Rm62 - chr3R 6003370 intron Rm62 - chr3R 6003424 intron Rm62 - chr3R_11_6000001 chr3R_6000001 RAL-563 797 chr3R 6015987 6015995 chr3R 6024472 6024485 Tirant 6 8495 2.0 3.0 2.5 1.7 8498 chr3R 6015987 intergenic not near genes chr3R 6020236 intergenic not near genes chr3R 6024485 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-563 798 chr3R 6122127 6122159 chr3R 6122259 6122293 9 133 1.0 1.0 1.0 4.5 166 chr3R 6122127 intergenic Vha14-2 + chr3R 6122210 intergenic Vha14-2 + chr3R 6122293 intergenic Vha14-2 + chr3R_9_6120001 chr3R_6120001 RAL-563 799 chr3R 6141915 6141947 chr3R 6141991 6142024 14 75 7.0 3.5 5.2 2.3 109 chr3R 6141915 intergenic not near genes chr3R 6141970 intergenic not near genes chr3R 6142024 intergenic not near genes chr3R_14_6140001 chr3R_6140001 RAL-563 800 chr3R 6158510 6158525 chr3R 6167093 6167107 Tirant 4 8582 3.0 4.0 3.5 0.9 8597 chr3R 6158510 intergenic not near genes chr3R 6162808 intergenic not near genes chr3R 6167107 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-563 801 chr3R 6158527 6158540 chr3R 6167091 6167116 Tirant 4 8574 2.5 3.5 3.0 1.0 8589 chr3R 6158527 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167116 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-563 802 chr3R 6191171 6191195 chr3R 6191251 6191275 5 79 1.0 1.5 1.2 2.3 104 chr3R 6191171 intron NPFR + chr3R 6191223 intron NPFR + chr3R 6191275 intron NPFR + chr3R_5_6190001 chr3R_6190001 RAL-563 803 chr3R 6192628 6192659 chr3R 6192713 6192744 14 83 2.0 2.5 2.2 4.4 116 chr3R 6192628 exon NPFR + chr3R 6192686 intron NPFR + chr3R 6192744 intron NPFR + chr3R_14_6190001 chr3R_6190001 RAL-563 804 chr3R 6203969 6203998 chr3R 6204101 6204130 4 132 0.5 1.0 0.8 2.2 161 chr3R 6203969 intron Osi24 + chr3R 6204050 intron Osi24 + chr3R 6204130 intron Osi24 + chr3R_4_6200001 chr3R_6200001 RAL-563 805 chr3R 6206288 6206319 chr3R 6206505 6206536 BS 13 214 3.5 5.0 4.2 2.5 248 chr3R 6206288 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206536 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-563 806 chr3R 6316776 6316807 chr3R 6316869 6316894 6 90 1.5 2.0 1.8 2.1 118 chr3R 6316776 intron Osi17 + chr3R 6316835 intron Osi17 + chr3R 6316894 intron Osi17 + chr3R_6_6315001 chr3R_6315001 RAL-563 807 chr3R 6461597 6461613 chr3R 6461677 6461693 5 80 0.0 1.5 0.8 2.8 96 chr3R 6461597 intergenic not near genes chr3R 6461645 intergenic not near genes chr3R 6461693 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-563 808 chr3R 6484062 6484083 chr3R 6484155 6484175 4 93 2.5 0.5 1.5 1.6 113 chr3R 6484062 intron CG15186 + chr3R 6484118 intron CG15186 + chr3R 6484175 intron CG15186 + chr3R_4_6480001 chr3R_6480001 RAL-563 809 chr3R 6610048 6610073 chr3R 6610200 6610224 6 152 4.5 1.5 3.0 1.5 176 chr3R 6610048 intergenic not near genes chr3R 6610136 intergenic not near genes chr3R 6610224 intergenic not near genes chr3R_6_6610001 chr3R_6610001 RAL-563 810 chr3R 6655768 6655795 chr3R 6656040 6656067 10 272 0.5 3.0 1.8 3.6 299 chr3R 6655768 exon Taf1 + chr3R 6655918 3` UTR Taf1 + chr3R 6656067 intergenic Taf1 +,CG1307 - chr3R_10_6655001 chr3R_6655001 RAL-563 811 chr3R 6663603 6663630 chr3R 6663683 6663709 5 76 3.0 2.0 2.5 1.4 106 chr3R 6663603 intron lab - chr3R 6663656 intron lab - chr3R 6663709 intron lab - chr3R_5_6660001 chr3R_6660001 RAL-563 812 chr3R 6737505 6737530 chr3R 6739285 6739314 Doc 6 1785 2.5 1.0 1.8 2.1 1809 chr3R 6737505 intron pb - chr3R 6738410 intron pb - chr3R 6739314 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-563 813 chr3R 6819637 6819656 chr3R 6819721 6819740 5 84 0.0 0.0 0.0 5.0 103 chr3R 6819637 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819688 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819740 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_5_6815001 chr3R_6815001 RAL-563 814 chr3R 6855750 6855779 chr3R 6855833 6855865 6 85 3.0 1.5 2.2 1.9 115 chr3R 6855750 intergenic not near genes chr3R 6855808 intergenic not near genes chr3R 6855865 intergenic not near genes chr3R_6_6855001 chr3R_6855001 RAL-563 815 chr3R 6918063 6918089 chr3R 6918141 6918167 5 78 1.0 1.5 1.2 2.3 104 chr3R 6918063 intron Antp - chr3R 6918115 intron Antp - chr3R 6918167 intron Antp - chr3R_5_6915001 chr3R_6915001 RAL-563 816 chr3R 6991178 6991205 chr3R 6991254 6991281 7 76 2.5 2.5 2.5 2.0 103 chr3R 6991178 intron Antp - chr3R 6991230 intron Antp - chr3R 6991281 intron Antp - chr3R_7_6990001 chr3R_6990001 RAL-563 817 chr3R 7030711 7030726 chr3R 7030780 7030802 4 74 0.5 2.5 1.5 1.6 91 chr3R 7030711 intergenic not near genes chr3R 7030756 intergenic not near genes chr3R 7030802 intergenic not near genes chr3R_4_7030001 chr3R_7030001 RAL-563 818 chr3R 7103299 7103306 chr3R 7103375 7103382 5 76 3.0 2.0 2.5 1.4 83 chr3R 7103299 intron Alh - chr3R 7103340 intron Alh - chr3R 7103382 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-563 819 chr3R 7536728 7536744 chr3R 7536884 7536898 4 155 12.5 20.0 16.2 0.2 170 chr3R 7536728 3` UTR alpha-Est4 - chr3R 7536813 exon alpha-Est4 - chr3R 7536898 exon alpha-Est4 - chr3R_4_7535001 chr3R_7535001 RAL-563 820 chr3R 7589793 7589825 chr3R 7589914 7589946 6 120 1.0 5.0 3.0 1.5 153 chr3R 7589793 intron CG34127 - chr3R 7589870 intron CG34127 - chr3R 7589946 intron CG34127 - chr3R_6_7585001 chr3R_7585001 RAL-563 821 chr3R 7655009 7655040 chr3R 7655085 7655122 12 78 0.5 1.5 1.0 6.0 113 chr3R 7655009 intergenic not near genes chr3R 7655066 intergenic not near genes chr3R 7655122 intergenic not near genes chr3R_12_7655001 chr3R_7655001 RAL-563 822 chr3R 7677918 7677933 chr3R 7678031 7678045 8 113 0.0 2.0 1.0 4.0 127 chr3R 7677918 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678045 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-563 823 chr3R 7680847 7680870 chr3R 7681476 7681498 4 629 3.0 2.5 2.8 1.1 651 chr3R 7680847 intron Nlg1 + chr3R 7681172 intron Nlg1 + chr3R 7681498 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-563 824 chr3R 7883127 7883160 chr3R 7883205 7883238 6 78 1.0 0.5 0.8 3.3 111 chr3R 7883127 intron CG17816 - chr3R 7883182 intron CG17816 - chr3R 7883238 intron CG17816 - chr3R_6_7880001 chr3R_7880001 RAL-563 825 chr3R 8081161 8081174 chr3R 8081228 8081251 4 74 5.0 5.0 5.0 0.7 90 chr3R 8081161 intron mAChR-B + chr3R 8081206 intron mAChR-B + chr3R 8081251 intron mAChR-B + chr3R_4_8080001 chr3R_8080001 RAL-563 826 chr3R 8090270 8090300 chr3R 8090447 8090473 6 176 0.5 0.0 0.2 5.0 203 chr3R 8090270 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090473 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-563 827 chr3R 8101762 8101784 chr3R 8104846 8104866 G2 13 3083 3.5 1.5 2.5 3.7 3104 chr3R 8101762 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104866 3` UTR CG7900 + chr3R_13_8100001 chr3R_8100001 RAL-563 828 chr3R 8315011 8315025 chr3R 8315088 8315102 9 77 1.0 4.5 2.8 2.4 91 chr3R 8315011 3` UTR Coq2 - chr3R 8315056 3` UTR Coq2 - chr3R 8315102 3` UTR Coq2 - chr3R_9_8315001 chr3R_8315001 RAL-563 829 chr3R 8339247 8339247 chr3R 21907534 21907536 4 13568288 23.5 11.5 17.5 0.2 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-563 830 chr3R 8360631 8360653 chr3R 8365167 8365189 7 4536 13.5 33.0 23.2 0.3 4558 chr3R 8360631 exon CG9684 - chr3R 8362910 exon CG7963 + chr3R 8365189 exon CG45263 - chr3R_7_8360001 chr3R_8360001 RAL-563 831 chr3R 8393590 8393604 chr3R 8393672 8393688 6 79 6.0 1.0 3.5 1.3 98 chr3R 8393590 intron CG45263 - chr3R 8393639 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_6_8390001 chr3R_8390001 RAL-563 832 chr3R 8403024 8403040 chr3R 8412178 8412206 roo 4 9162 1.0 2.0 1.5 1.6 9182 chr3R 8403024 intron CG45263 - chr3R 8407615 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-563 833 chr3R 8478086 8478109 chr3R 8478166 8478189 4 80 1.0 4.0 2.5 1.1 103 chr3R 8478086 intergenic CG45263 - chr3R 8478138 intergenic not near genes chr3R 8478189 intergenic not near genes chr3R_4_8475001 chr3R_8475001 RAL-563 834 chr3R 8570481 8570510 chr3R 8575116 8575146 HMS-Beagle 10 4635 1.0 3.5 2.2 3.1 4665 chr3R 8570481 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_10_8570001 chr3R_8570001 RAL-563 835 chr3R 8601779 8601795 chr3R 8610918 8610926 roo 6 9143 3.0 1.0 2.0 2.0 9147 chr3R 8601779 intron 5-HT2B + chr3R 8606352 intron 5-HT2B + chr3R 8610926 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-563 836 chr3R 8612087 8612110 chr3R 8612166 8612189 5 79 1.0 1.5 1.2 2.3 102 chr3R 8612087 intron 5-HT2B + chr3R 8612138 intron 5-HT2B + chr3R 8612189 intron 5-HT2B + chr3R_5_8610001 chr3R_8610001 RAL-563 837 chr3R 8707357 8707383 chr3R 8709794 8709824 jockey 9 2439 3.5 3.0 3.2 2.1 2467 chr3R 8707357 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709824 intergenic not near genes chr3R_9_8705001 chr3R_8705001 RAL-563 838 chr3R 9036372 9036393 chr3R 9036450 9036471 4 78 1.5 0.5 1.0 2.0 99 chr3R 9036372 intron neur - chr3R 9036422 intron neur - chr3R 9036471 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-563 839 chr3R 9073217 9073246 chr3R 9073296 9073331 16 84 3.0 1.5 2.2 5.0 114 chr3R 9073217 intron pum - chr3R 9073274 intron pum - chr3R 9073331 intron pum - chr3R_16_9070001 chr3R_9070001 RAL-563 840 chr3R 9179504 9179518 chr3R 9181149 9181166 4 1647 2.0 1.0 1.5 1.6 1662 chr3R 9179504 intron pum - chr3R 9180335 intron pum - chr3R 9181166 intron pum - chr3R_4_9180001 chr3R_9180001 RAL-563 841 chr3R 9319587 9319609 chr3R 9320022 9320044 jockey 6 435 2.5 4.0 3.2 1.4 457 chr3R 9319587 intron CG8861 - chr3R 9319816 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-563 842 chr3R 9382831 9382849 chr3R 9382954 9382974 7 125 3.5 1.5 2.5 2.0 143 chr3R 9382831 intron FER - chr3R 9382902 intron FER - chr3R 9382974 intron FER - chr3R_7_9380001 chr3R_9380001 RAL-563 843 chr3R 9390544 9390559 chr3R 9390628 9390642 4 84 1.5 3.0 2.2 1.2 98 chr3R 9390544 intron FER - chr3R 9390593 intron FER - chr3R 9390642 intron FER - chr3R_4_9390001 chr3R_9390001 RAL-563 844 chr3R 9836869 9836900 chr3R 9836957 9836988 16 87 1.0 4.5 2.8 4.2 119 chr3R 9836869 intron Teh1 - chr3R 9836928 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_16_9835001 chr3R_9835001 RAL-563 845 chr3R 9996305 9996332 chr3R 9996643 9996670 9 338 2.0 4.5 3.2 2.1 365 chr3R 9996305 exon Gr85a - chr3R 9996488 exon Gr85a - chr3R 9996670 exon Gr85a - chr3R_9_9995001 chr3R_9995001 RAL-563 846 chr3R 9998833 9998854 chr3R 10003935 10003956 5 5102 23.0 6.5 14.8 0.3 5123 chr3R 9998833 exon Spn85F + chr3R 10001394 intergenic CG5359 -,Mical - chr3R 10003956 intron Mical - chr3R_5_10000001 chr3R_10000001 RAL-563 847 chr3R 10641612 10641625 chr3R 10641692 10641704 5 80 4.0 9.0 6.5 0.7 92 chr3R 10641612 5` UTR CR44018 + chr3R 10641658 5` UTR CR44018 + chr3R 10641704 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-563 848 chr3R 10716434 10716456 chr3R 10716582 10716604 5 148 1.5 3.0 2.2 1.6 170 chr3R 10716434 intergenic not near genes chr3R 10716519 intergenic not near genes chr3R 10716604 intergenic not near genes chr3R_5_10715001 chr3R_10715001 RAL-563 849 chr3R 10723501 10723516 chr3R 10723585 10723600 7 83 2.5 0.5 1.5 2.8 99 chr3R 10723501 intergenic not near genes chr3R 10723550 intergenic not near genes chr3R 10723600 intergenic not near genes chr3R_7_10720001 chr3R_10720001 RAL-563 850 chr3R 10745424 10745450 chr3R 10745511 10745537 5 85 6.0 2.5 4.2 1.0 113 chr3R 10745424 intron TkR86C - chr3R 10745480 intron TkR86C - chr3R 10745537 intron TkR86C - chr3R_5_10745001 chr3R_10745001 RAL-563 851 chr3R 10919691 10919712 chr3R 10919769 10919790 7 78 2.5 3.0 2.8 1.8 99 chr3R 10919691 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919790 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-563 852 chr3R 10957869 10957881 chr3R 10963254 10963270 Rt1c 5 5384 4.0 3.0 3.5 1.1 5401 chr3R 10957869 intergenic not near genes chr3R 10960570 intergenic not near genes chr3R 10963270 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-563 853 chr3R 11085468 11085486 chr3R 11085545 11085563 4 77 0.0 1.0 0.5 2.7 95 chr3R 11085468 3` UTR CR44940 - chr3R 11085516 intergenic CR44940 - chr3R 11085563 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-563 854 chr3R 11102326 11102346 chr3R 11102407 11102428 6 81 3.5 3.0 3.2 1.4 102 chr3R 11102326 intergenic not near genes chr3R 11102377 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-563 855 chr3R 11130118 11130132 chr3R 11130207 11130221 7 88 7.5 0.0 3.8 1.5 103 chr3R 11130118 intergenic not near genes chr3R 11130170 intergenic not near genes chr3R 11130221 intergenic not near genes chr3R_7_11130001 chr3R_11130001 RAL-563 856 chr3R 11151679 11151691 chr3R 11156572 11156584 4 4893 21.5 2.0 11.8 0.3 4905 chr3R 11151679 3` UTR Ugt86Di - chr3R 11154132 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156584 intergenic Ugt86Dc + chr3R_4_11150001 chr3R_11150001 RAL-563 857 chr3R 11263399 11263432 chr3R 11263482 11263516 6 84 0.5 2.5 1.5 2.4 117 chr3R 11263399 intergenic not near genes chr3R 11263458 intergenic not near genes chr3R 11263516 intergenic not near genes chr3R_6_11260001 chr3R_11260001 RAL-563 858 chr3R 11294476 11294486 chr3R 11294787 11294796 6 311 0.5 1.5 1.0 3.0 320 chr3R 11294476 intron CR31386 - chr3R 11294636 intron CR31386 - chr3R 11294796 intron CR31386 - chr3R_6_11290001 chr3R_11290001 RAL-563 859 chr3R 11307190 11307222 chr3R 11307277 11307309 8 87 2.0 3.0 2.5 2.3 119 chr3R 11307190 intergenic not near genes chr3R 11307250 intergenic not near genes chr3R 11307309 intergenic not near genes chr3R_8_11305001 chr3R_11305001 RAL-563 860 chr3R 11342541 11342572 chr3R 11342617 11342647 4 76 1.0 2.0 1.5 1.6 106 chr3R 11342541 intron pros + chr3R 11342594 intron pros + chr3R 11342647 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-563 861 chr3R 11379240 11379269 chr3R 11388395 11388422 roo 7 9154 0.5 2.0 1.2 3.2 9182 chr3R 11379240 intron pros + chr3R 11383831 intron pros + chr3R 11388422 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-563 862 chr3R 11546874 11546905 chr3R 11547080 11547111 12 202 2.0 4.0 3.0 3.0 237 chr3R 11546874 intergenic not near genes chr3R 11546992 intergenic not near genes chr3R 11547111 intergenic not near genes chr3R_12_11545001 chr3R_11545001 RAL-563 863 chr3R 11710207 11710231 chr3R 11710284 11710309 6 77 3.0 3.0 3.0 1.5 102 chr3R 11710207 intergenic not near genes chr3R 11710258 intergenic not near genes chr3R 11710309 intergenic not near genes chr3R_6_11710001 chr3R_11710001 RAL-563 864 chr3R 11734171 11734184 chr3R 11734289 11734303 7 118 3.0 2.0 2.5 2.0 132 chr3R 11734171 intergenic not near genes chr3R 11734237 intergenic not near genes chr3R 11734303 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-563 865 chr3R 11841079 11841093 chr3R 11846270 11846284 BS 6 5190 3.5 6.0 4.8 1.0 5205 chr3R 11841079 intron CG6959 - chr3R 11843682 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-563 866 chr3R 11853456 11853471 chr3R 11853600 11853618 6 146 2.0 1.0 1.5 2.4 162 chr3R 11853456 intron CG6959 - chr3R 11853537 intron CG6959 - chr3R 11853618 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-563 867 chr3R 11909391 11909392 chr3R 11909438 11909470 4 66 5.0 6.0 5.5 0.6 79 chr3R 11909391 intron Cad87A - chr3R 11909430 intron Cad87A - chr3R 11909470 intron Cad87A - chr3R_4_11905001 chr3R_11905001 RAL-563 868 chr3R 12080867 12080898 chr3R 12080944 12080976 5 78 3.0 2.0 2.5 1.4 109 chr3R 12080867 intron CG14741 - chr3R 12080922 intron CG14741 - chr3R 12080976 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-563 869 chr3R 12102873 12102885 chr3R 12102973 12102973 4 97 5.5 6.0 5.8 0.6 100 chr3R 12102873 intron dpr17 + chr3R 12102923 intron dpr17 + chr3R 12102973 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-563 870 chr3R 12214344 12214366 chr3R 12214434 12214455 6 90 21.5 17.0 19.2 0.3 111 chr3R 12214344 3` UTR CG4848 - chr3R 12214400 3` UTR CG4848 - chr3R 12214455 3` UTR CG4848 - chr3R_6_12210001 chr3R_12210001 RAL-563 871 chr3R 12273599 12273618 chr3R 12273918 12273937 5 319 2.5 2.0 2.2 1.6 338 chr3R 12273599 intron svp + chr3R 12273768 intron svp + chr3R 12273937 intron svp + chr3R_5_12270001 chr3R_12270001 RAL-563 872 chr3R 12704839 12705038 chr3R 12704918 12705115 5 78 1.5 2.0 1.8 1.8 276 chr3R 12704839 3` UTR Past1 + chr3R 12704977 intergenic Past1 +,CG12279 + chr3R 12705115 5` UTR CG12279 + chr3R_5_12700001 chr3R_12700001 RAL-563 873 chr3R 12720670 12720703 chr3R 12720746 12720779 14 75 1.5 3.5 2.5 4.0 109 chr3R 12720670 intron Men - chr3R 12720724 intron Men - chr3R 12720779 intron Men - chr3R_14_12720001 chr3R_12720001 RAL-563 874 chr3R 12733487 12733504 chr3R 12733554 12733580 4 74 2.5 2.5 2.5 1.1 93 chr3R 12733487 intergenic not near genes chr3R 12733534 intergenic not near genes chr3R 12733580 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-563 875 chr3R 12886920 12886949 chr3R 12887004 12887034 6 84 0.5 2.5 1.5 2.4 114 chr3R 12886920 intergenic not near genes chr3R 12886977 intergenic not near genes chr3R 12887034 intergenic not near genes chr3R_6_12885001 chr3R_12885001 RAL-563 876 chr3R 13120772 13120800 chr3R 13120849 13120877 10 74 4.0 4.0 4.0 2.0 105 chr3R 13120772 intron timeout + chr3R 13120824 intron timeout + chr3R 13120877 intron timeout + chr3R_10_13120001 chr3R_13120001 RAL-563 877 chr3R 13143039 13143065 chr3R 13148615 13148616 mdg3 7 5566 4.5 3.0 3.8 1.5 5577 chr3R 13143039 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145828 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148616 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-563 878 chr3R 13358225 13358236 chr3R 13358504 13358515 4 279 3.0 3.0 3.0 1.0 290 chr3R 13358225 intergenic not near genes chr3R 13358370 intergenic not near genes chr3R 13358515 intergenic not near genes chr3R_4_13355001 chr3R_13355001 RAL-563 879 chr3R 13470843 13470872 chr3R 13471172 13471201 8 329 4.0 0.5 2.2 2.5 358 chr3R 13470843 intergenic not near genes chr3R 13471022 intergenic not near genes chr3R 13471201 intergenic not near genes chr3R_8_13470001 chr3R_13470001 RAL-563 880 chr3R 13511816 13511845 chr3R 13511894 13511901 6 71 4.0 2.0 3.0 1.5 85 chr3R 13511816 intergenic not near genes chr3R 13511858 intergenic not near genes chr3R 13511901 intergenic not near genes chr3R_6_13510001 chr3R_13510001 RAL-563 881 chr3R 13693028 13693028 chr3R 21907534 21907536 8 8214507 7.0 11.5 9.2 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-563 882 chr3R 13782051 13782087 chr3R 13782132 13782167 6 81 2.0 0.5 1.2 2.7 116 chr3R 13782051 exon CG9286 + chr3R 13782109 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_6_13780001 chr3R_13780001 RAL-563 883 chr3R 13923447 13923469 chr3R 13923524 13923546 5 76 2.5 7.0 4.8 0.9 99 chr3R 13923447 intergenic not near genes chr3R 13923496 intergenic not near genes chr3R 13923546 intergenic not near genes chr3R_5_13920001 chr3R_13920001 RAL-563 884 chr3R 14038724 14038741 chr3R 14038812 14038829 5 88 1.0 3.0 2.0 1.7 105 chr3R 14038724 intergenic not near genes chr3R 14038776 intergenic not near genes chr3R 14038829 intergenic not near genes chr3R_5_14035001 chr3R_14035001 RAL-563 885 chr3R 14070130 14070146 chr3R 14070211 14070227 6 80 2.5 1.5 2.0 2.0 97 chr3R 14070130 intron foxo + chr3R 14070178 intron foxo + chr3R 14070227 intron foxo + chr3R_6_14070001 chr3R_14070001 RAL-563 886 chr3R 14117456 14117472 chr3R 14117532 14117548 6 76 2.0 2.5 2.2 1.9 92 chr3R 14117456 intron Kif19A - chr3R 14117502 intron Kif19A - chr3R 14117548 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-563 887 chr3R 14246401 14246411 chr3R 14247896 14247902 jockey 6 1494 3.5 4.0 3.8 1.2 1501 chr3R 14246401 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247902 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-563 888 chr3R 14504488 14504517 chr3R 14504836 14504836 6 340 2.0 1.5 1.8 2.1 348 chr3R 14504488 intron CR44177 + chr3R 14504662 intron CR44177 + chr3R 14504836 intron CR44177 + chr3R_6_14500001 chr3R_14500001 RAL-563 889 chr3R 14527406 14527411 chr3R 14527483 14527484 5 76 3.0 1.0 2.0 1.7 78 chr3R 14527406 intron Pde6 - chr3R 14527445 intron Pde6 - chr3R 14527484 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-563 890 chr3R 14577964 14577990 chr3R 14578080 14578106 7 116 1.0 2.0 1.5 2.8 142 chr3R 14577964 intron stumps + chr3R 14578035 intron stumps + chr3R 14578106 intron stumps + chr3R_7_14575001 chr3R_14575001 RAL-563 891 chr3R 14630433 14630455 chr3R 14630771 14630794 6 340 4.0 5.0 4.5 1.1 361 chr3R 14630433 intron CG7886 - chr3R 14630614 intron,5` UTR CG7886 -,Cad88C + chr3R 14630794 intron,5` UTR CG7886 -,Cad88C + chr3R_6_14630001 chr3R_14630001 RAL-563 892 chr3R 14704382 14704401 chr3R 14704459 14704477 4 77 0.0 1.5 0.8 2.2 95 chr3R 14704382 intron kibra - chr3R 14704430 intron kibra - chr3R 14704477 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-563 893 chr3R 14869870 14869893 chr3R 14869960 14869984 8 89 0.0 5.5 2.8 2.1 114 chr3R 14869870 intron btsz - chr3R 14869927 intron btsz - chr3R 14869984 intron btsz - chr3R_8_14865001 chr3R_14865001 RAL-563 894 chr3R 14927252 14927268 chr3R 14927336 14927366 8 96 2.5 2.5 2.5 2.3 114 chr3R 14927252 intergenic not near genes chr3R 14927309 intergenic not near genes chr3R 14927366 intergenic not near genes chr3R_8_14925001 chr3R_14925001 RAL-563 895 chr3R 14970888 14970900 chr3R 14970975 14970987 4 87 0.5 1.5 1.0 2.0 99 chr3R 14970888 intergenic not near genes chr3R 14970938 intergenic not near genes chr3R 14970987 intergenic not near genes chr3R_4_14970001 chr3R_14970001 RAL-563 896 chr3R 15006856 15006885 chr3R 15007235 15007264 6 379 2.5 1.5 2.0 2.0 408 chr3R 15006856 intergenic not near genes chr3R 15007060 intergenic not near genes chr3R 15007264 intergenic not near genes chr3R_6_15005001 chr3R_15005001 RAL-563 897 chr3R 15088098 15088101 chr3R 15088195 15088195 4 96 3.0 2.0 2.5 1.1 97 chr3R 15088098 intron CG6966 - chr3R 15088146 intron CG6966 - chr3R 15088195 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-563 898 chr3R 15132064 15132086 chr3R 15135122 15135146 Juan 6 3056 5.0 5.5 5.2 1.0 3082 chr3R 15132064 intergenic CG42788 - chr3R 15133605 intergenic not near genes chr3R 15135146 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-563 899 chr3R 15130867 15130882 chr3R 15141230 15141245 7 10362 22.5 20.0 21.2 0.3 10378 chr3R 15130867 intron CG42788 - chr3R 15136056 exon CG6912 - chr3R 15141245 exon CG3987 + chr3R_7_15135001 chr3R_15135001 RAL-563 900 chr3R 15286987 15286987 chr3R 21907534 21907535 4 6620548 21.0 11.5 16.2 0.2 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-563 901 chr3R 15441153 15441171 chr3R 15446175 15446194 4 5022 16.0 6.5 11.2 0.3 5041 chr3R 15441153 exon Act88F + chr3R 15443674 exon AdamTS-A - chr3R 15446194 intron AdamTS-A - chr3R_4_15440001 chr3R_15440001 RAL-563 902 chr3R 15571246 15571492 chr3R 15571353 15571583 8 104 5.0 1.0 3.0 2.0 337 chr3R 15571246 intergenic not near genes chr3R 15571414 intergenic not near genes chr3R 15571583 intergenic not near genes chr3R_8_15570001 chr3R_15570001 RAL-563 903 chr3R 15601170 15601194 chr3R 15608691 15608715 412 4 7521 4.0 2.0 3.0 1.0 7545 chr3R 15601170 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-563 904 chr3R 15639342 15639364 chr3R 15639627 15639650 7 285 2.5 0.5 1.5 2.8 308 chr3R 15639342 intergenic not near genes chr3R 15639496 intergenic not near genes chr3R 15639650 intergenic not near genes chr3R_7_15635001 chr3R_15635001 RAL-563 905 chr3R 15734173 15734196 chr3R 15734262 15734286 4 90 1.0 2.5 1.8 1.4 113 chr3R 15734173 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734286 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-563 906 chr3R 15790135 15790286 chr3R 15790243 15790404 9 109 3.5 5.0 4.2 1.7 269 chr3R 15790135 exon c(3)G - chr3R 15790270 exon c(3)G - chr3R 15790404 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-563 907 chr3R 15790843 15790872 chr3R 15790959 15790988 6 116 10.0 12.5 11.2 0.5 145 chr3R 15790843 exon c(3)G - chr3R 15790916 intron c(3)G - chr3R 15790988 exon c(3)G - chr3R_6_15790001 chr3R_15790001 RAL-563 908 chr3R 15868951 15868957 chr3R 15869031 15869037 4 78 0.5 0.0 0.2 3.3 86 chr3R 15868951 intron CG31183 - chr3R 15868994 intron CG31183 - chr3R 15869037 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-563 909 chr3R 16048866 16048883 chr3R 16048948 16048973 6 84 2.0 7.5 4.8 1.0 107 chr3R 16048866 intron ird5 - chr3R 16048920 intron ird5 - chr3R 16048973 intron ird5 - chr3R_6_16045001 chr3R_16045001 RAL-563 910 chr3R 16194400 16194431 chr3R 16194660 16194694 7 263 0.5 0.0 0.2 5.8 294 chr3R 16194400 intron sra + chr3R 16194547 intron sra + chr3R 16194694 intron sra + chr3R_7_16190001 chr3R_16190001 RAL-563 911 chr3R 16225088 16225118 chr3R 16225173 16225203 5 85 2.5 3.0 2.8 1.3 115 chr3R 16225088 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225203 intergenic tara + chr3R_5_16225001 chr3R_16225001 RAL-563 912 chr3R 16320794 16320804 chr3R 16321168 16321178 4 374 1.0 1.0 1.0 2.0 384 chr3R 16320794 intron Sulf1 - chr3R 16320986 intron Sulf1 - chr3R 16321178 intron Sulf1 - chr3R_4_16320001 chr3R_16320001 RAL-563 913 chr3R 16754128 16754160 chr3R 16754630 16754662 7 502 0.5 1.0 0.8 3.9 534 chr3R 16754128 intron bxd - chr3R 16754395 intron bxd - chr3R 16754662 intron bxd - chr3R_7_16750001 chr3R_16750001 RAL-563 914 chr3R 16756321 16756352 chr3R 16762512 16762543 diver 6 6188 1.0 1.0 1.0 3.0 6222 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762543 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-563 915 chr3R 17024402 17024433 chr3R 17024662 17024696 14 261 3.0 3.5 3.2 3.3 294 chr3R 17024402 intron Pxd + chr3R 17024549 intron Pxd + chr3R 17024696 intron Pxd + chr3R_14_17020001 chr3R_17020001 RAL-563 916 chr3R 17178613 17178630 chr3R 17178890 17178907 4 276 1.5 4.0 2.8 1.1 294 chr3R 17178613 intron Mur89F - chr3R 17178760 intron Mur89F - chr3R 17178907 intron Mur89F - chr3R_4_17175001 chr3R_17175001 RAL-563 917 chr3R 17294668 17294701 chr3R 17295096 17295129 BS 4 428 1.0 0.5 0.8 2.2 461 chr3R 17294668 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295129 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-563 918 chr3R 17521571 17521580 chr3R 17521731 17521740 7 159 1.0 2.0 1.5 2.8 169 chr3R 17521571 intergenic not near genes chr3R 17521656 intergenic not near genes chr3R 17521740 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-563 919 chr3R 17759234 17759251 chr3R 17759491 17759507 5 257 2.5 3.5 3.0 1.2 273 chr3R 17759234 intron TyrR - chr3R 17759370 intron TyrR - chr3R 17759507 intron TyrR - chr3R_5_17755001 chr3R_17755001 RAL-563 920 chr3R 17814773 17814798 chr3R 17814858 17814883 9 85 2.5 2.5 2.5 2.6 110 chr3R 17814773 intron tinc + chr3R 17814828 intron tinc + chr3R 17814883 intron tinc + chr3R_9_17810001 chr3R_17810001 RAL-563 921 chr3R 17823209 17823233 chr3R 17823293 17823318 5 80 0.0 0.5 0.2 4.2 109 chr3R 17823209 intron tinc + chr3R 17823264 intron tinc + chr3R 17823318 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-563 922 chr3R 17845204 17845218 chr3R 17845275 17845295 4 75 4.5 3.0 3.8 0.8 91 chr3R 17845204 intron tinc + chr3R 17845250 intron tinc + chr3R 17845295 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-563 923 chr3R 17925852 17925885 chr3R 17927319 17927352 hobo 11 1463 5.0 4.5 4.8 1.9 1500 chr3R 17925852 intron cpo + chr3R 17926602 intron cpo + chr3R 17927352 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-563 924 chr3R 18061589 18061609 chr3R 18063156 18063177 F-element 5 1568 0.0 1.5 0.8 2.8 1588 chr3R 18061589 intergenic not near genes chr3R 18062383 intergenic not near genes chr3R 18063177 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-563 925 chr3R 18322841 18322876 chr3R 18322940 18322975 6 99 3.0 0.5 1.8 2.1 134 chr3R 18322841 intron CG31235 - chr3R 18322908 intron CG31235 - chr3R 18322975 intron CG31235 - chr3R_6_18320001 chr3R_18320001 RAL-563 926 chr3R 18537769 18537792 chr3R 18537864 18537871 5 87 1.0 2.5 1.8 1.8 102 chr3R 18537769 intron fru - chr3R 18537820 intron fru - chr3R 18537871 intron fru - chr3R_5_18535001 chr3R_18535001 RAL-563 927 chr3R 18578922 18578945 chr3R 18579173 18579206 4 254 1.0 2.5 1.8 1.4 284 chr3R 18578922 intron,intron CG7694 +,fray + chr3R 18579064 intron,intron CG7694 +,fray + chr3R 18579206 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-563 928 chr3R 18617711 18617731 chr3R 18617791 18617811 4 80 0.5 1.0 0.8 2.2 100 chr3R 18617711 intron,intron qin +,CG14304 - chr3R 18617761 intron,intron qin +,CG14304 - chr3R 18617811 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-563 929 chr3R 18695761 18695774 chr3R 18695845 18695858 4 82 2.0 0.0 1.0 2.0 97 chr3R 18695761 3` UTR CG34282 + chr3R 18695810 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-563 930 chr3R 18766776 18766807 chr3R 18766854 18766882 7 77 0.0 1.5 0.8 3.9 106 chr3R 18766776 intron CG7720 - chr3R 18766829 intron CG7720 - chr3R 18766882 intron CG7720 - chr3R_7_18765001 chr3R_18765001 RAL-563 931 chr3R 18785877 18785895 chr3R 18785954 18785972 6 76 2.0 2.0 2.0 2.0 95 chr3R 18785877 intron CG7720 - chr3R 18785924 intron CG7720 - chr3R 18785972 intron CG7720 - chr3R_6_18785001 chr3R_18785001 RAL-563 932 chr3R 18808474 18808500 chr3R 18808551 18808558 4 68 2.0 1.5 1.8 1.4 84 chr3R 18808474 intron CG18208 - chr3R 18808516 intron CG18208 - chr3R 18808558 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-563 933 chr3R 19188232 19188261 chr3R 19188341 19188370 6 109 2.5 2.5 2.5 1.7 138 chr3R 19188232 intron CG31475 + chr3R 19188301 intron CG31475 + chr3R 19188370 intron CG31475 + chr3R_6_19185001 chr3R_19185001 RAL-563 934 chr3R 19205613 19205633 chr3R 19205694 19205714 9 80 4.0 2.0 3.0 2.2 101 chr3R 19205613 intergenic not near genes chr3R 19205664 intergenic not near genes chr3R 19205714 intergenic not near genes chr3R_9_19205001 chr3R_19205001 RAL-563 935 chr3R 19212996 19213019 chr3R 19213075 19213097 8 77 5.5 6.5 6.0 1.1 101 chr3R 19212996 intron cry + chr3R 19213046 intron cry + chr3R 19213097 intron cry + chr3R_8_19210001 chr3R_19210001 RAL-563 936 chr3R 19717688 19717719 chr3R 19717770 19717800 11 80 2.0 3.0 2.5 3.1 112 chr3R 19717688 intergenic not near genes chr3R 19717744 intergenic not near genes chr3R 19717800 intergenic not near genes chr3R_11_19715001 chr3R_19715001 RAL-563 937 chr3R 19793912 19793919 chr3R 19794005 19794012 7 93 4.0 5.5 4.8 1.2 100 chr3R 19793912 intergenic bnl - chr3R 19793962 intergenic bnl - chr3R 19794012 intergenic bnl - chr3R_7_19790001 chr3R_19790001 RAL-563 938 chr3R 19989853 19989874 chr3R 19989929 19989954 6 77 11.0 6.5 8.8 0.6 101 chr3R 19989853 intron Hs6st - chr3R 19989904 intron Hs6st - chr3R 19989954 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-563 939 chr3R 20155609 20155644 chr3R 20155686 20155721 5 77 1.5 0.0 0.8 2.8 112 chr3R 20155609 intergenic not near genes chr3R 20155665 intergenic not near genes chr3R 20155721 intergenic not near genes chr3R_5_20155001 chr3R_20155001 RAL-563 940 chr3R 20195225 20195257 chr3R 20195311 20195327 5 82 1.5 7.0 4.2 1.0 102 chr3R 20195225 intergenic not near genes chr3R 20195276 intergenic not near genes chr3R 20195327 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-563 941 chr3R 20197419 20197451 chr3R 20197507 20197539 10 87 1.5 3.5 2.5 2.9 120 chr3R 20197419 intergenic not near genes chr3R 20197479 intergenic not near genes chr3R 20197539 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-563 942 chr3R 20323479 20323490 chr3R 20323560 20323571 4 81 6.0 3.5 4.8 0.7 92 chr3R 20323479 3` UTR CG42668 + chr3R 20323525 3` UTR CG42668 + chr3R 20323571 3` UTR CG42668 + chr3R_4_20320001 chr3R_20320001 RAL-563 943 chr3R 20331004 20331027 chr3R 20331490 20331513 roo 4 486 1.0 0.0 0.5 2.7 509 chr3R 20331004 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331513 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-563 944 chr3R 20394420 20394442 chr3R 20394668 20394674 4 245 1.5 1.0 1.2 1.8 254 chr3R 20394420 intron Gfrl - chr3R 20394547 intron Gfrl - chr3R 20394674 intron Gfrl - chr3R_4_20390001 chr3R_20390001 RAL-563 945 chr3R 20467085 20467098 chr3R 20467161 20467172 4 72 1.5 2.0 1.8 1.4 87 chr3R 20467085 intron Gfrl - chr3R 20467128 intron Gfrl - chr3R 20467172 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-563 946 chr3R 20506595 20506616 chr3R 20507398 20507419 BS 4 803 1.0 1.5 1.2 1.8 824 chr3R 20506595 intergenic Or92a + chr3R 20507007 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-563 947 chr3R 20604691 20604697 chr3R 20604767 20604773 5 76 4.0 6.5 5.2 0.8 82 chr3R 20604691 intron bon + chr3R 20604732 intron bon + chr3R 20604773 intron bon + chr3R_5_20600001 chr3R_20600001 RAL-563 948 chr3R 20686963 20686980 chr3R 20687398 20687414 7 434 3.0 1.0 2.0 2.3 451 chr3R 20686963 intergenic not near genes chr3R 20687188 intergenic not near genes chr3R 20687414 intergenic not near genes chr3R_7_20685001 chr3R_20685001 RAL-563 949 chr3R 20722852 20722887 chr3R 20722979 20723014 6 127 2.0 0.5 1.2 2.7 162 chr3R 20722852 intergenic not near genes chr3R 20722933 intergenic not near genes chr3R 20723014 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-563 950 chr3R 20764416 20764440 chr3R 20764512 20764534 8 94 2.5 4.5 3.5 1.8 118 chr3R 20764416 intron Syp + chr3R 20764475 intron Syp + chr3R 20764534 intron Syp + chr3R_8_20760001 chr3R_20760001 RAL-563 951 chr3R 20787438 20787457 chr3R 20787529 20787548 5 91 3.0 1.0 2.0 1.7 110 chr3R 20787438 intron Syp + chr3R 20787493 intron Syp + chr3R 20787548 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-563 952 chr3R 20865778 20865804 chr3R 20865857 20865883 11 78 0.0 5.5 2.8 2.9 105 chr3R 20865778 intron CG3822 - chr3R 20865830 intron CG3822 - chr3R 20865883 intron CG3822 - chr3R_11_20865001 chr3R_20865001 RAL-563 953 chr3R 20870255 20870284 chr3R 20870340 20870369 5 85 1.0 0.5 0.8 2.8 114 chr3R 20870255 intergenic not near genes chr3R 20870312 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_5_20870001 chr3R_20870001 RAL-563 954 chr3R 21014015 21014045 chr3R 21014089 21014123 5 77 2.5 1.5 2.0 1.7 108 chr3R 21014015 3` UTR Calx + chr3R 21014069 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-563 955 chr3R 17356310 17356310 chr3R 21065714 21065719 4 3709406 2.5 10.5 6.5 0.5 3709409 chr3R 17356310 intron beat-IIa - chr3R 19211014 intergenic not near genes chr3R 21065719 intron AnxB9 + chr3R_4_19210001 chr3R_19210001 RAL-563 956 chr3R 21108043 21108066 chr3R 21108304 21108327 5 261 1.0 2.5 1.8 1.8 284 chr3R 21108043 intergenic Sec15 -,rtet + chr3R 21108185 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_5_21105001 chr3R_21105001 RAL-563 957 chr3R 21141675 21141707 chr3R 21150154 21150184 Tirant 21 8470 5.5 5.0 5.2 3.4 8509 chr3R 21141675 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150184 intron SNF4Agamma + chr3R_21_21145001 chr3R_21145001 RAL-563 958 chr3R 21163256 21163276 chr3R 21163334 21163354 7 77 0.0 4.0 2.0 2.3 98 chr3R 21163256 intron SNF4Agamma + chr3R 21163305 intron SNF4Agamma + chr3R 21163354 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-563 959 chr3R 21183249 21183257 chr3R 21183327 21183332 4 77 1.0 2.0 1.5 1.6 83 chr3R 21183249 intron SNF4Agamma + chr3R 21183290 intron SNF4Agamma + chr3R 21183332 intron SNF4Agamma + chr3R_4_21180001 chr3R_21180001 RAL-563 960 chr3R 21385931 21385965 chr3R 21386008 21386042 7 77 0.5 2.5 1.5 2.8 111 chr3R 21385931 intergenic not near genes chr3R 21385986 intergenic not near genes chr3R 21386042 intergenic not near genes chr3R_7_21385001 chr3R_21385001 RAL-563 961 chr3R 21408526 21408541 chr3R 21408603 21408617 5 74 6.0 2.5 4.2 1.0 91 chr3R 21408526 intergenic CheB93a + chr3R 21408572 intergenic CheB93a + chr3R 21408617 intergenic CheB93a + chr3R_5_21405001 chr3R_21405001 RAL-563 962 chr3R 21433177 21433187 chr3R 21433272 21433283 5 95 2.5 0.5 1.5 2.0 106 chr3R 21433177 intron lbl - chr3R 21433230 intron lbl - chr3R 21433283 exon lbl - chr3R_5_21430001 chr3R_21430001 RAL-563 963 chr3R 21472016 21472036 chr3R 21472097 21472107 7 79 0.5 0.5 0.5 4.7 91 chr3R 21472016 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472107 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-563 964 chr3R 21609003 21609041 chr3R 21611637 21611674 NOF 10 2631 3.0 2.5 2.8 2.6 2671 chr3R 21609003 intron InR - chr3R 21610338 intron InR - chr3R 21611674 intron InR - chr3R_10_21610001 chr3R_21610001 RAL-563 965 chr3R 21761132 21761150 chr3R 21768524 21768541 mdg1 6 7388 5.5 5.5 5.5 0.9 7409 chr3R 21761132 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-563 966 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 23.5 11.5 17.5 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-563 967 chr3R 21907534 21907534 chr3R 28831801 28831804 12 6924268 10.0 15.0 12.5 0.9 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_12_25365001 chr3R_25365001 RAL-563 968 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 23.5 12.0 17.8 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-563 969 chr3R 9620956 9620956 chr3R 21907535 21907535 4 12286579 3.5 12.0 7.8 0.5 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-563 970 chr3R 21907535 21907535 chr3R 28831801 28831802 15 6924266 10.0 15.0 12.5 1.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-563 971 chr3R 21907536 21907536 chr3R 28831801 28831802 5 6924266 10.0 15.0 12.5 0.4 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-563 972 chr3R 22450554 22450575 chr3R 22453194 22453215 NOF 12 2639 5.0 5.0 5.0 2.0 2661 chr3R 22450554 intron CG34376 + chr3R 22451884 intron CG34376 + chr3R 22453215 intron CG34376 + chr3R_12_22450001 chr3R_22450001 RAL-563 973 chr3R 22497343 22497363 chr3R 22497652 22497655 4 305 2.0 0.0 1.0 2.0 312 chr3R 22497343 5` UTR Octbeta1R + chr3R 22497499 intron Octbeta1R + chr3R 22497655 intron Octbeta1R + chr3R_4_22495001 chr3R_22495001 RAL-563 974 chr3R 22507788 22507815 chr3R 22507872 22507899 7 84 3.5 3.0 3.2 1.7 111 chr3R 22507788 intron Octbeta1R + chr3R 22507844 intron Octbeta1R + chr3R 22507899 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-563 975 chr3R 22538444 22538470 chr3R 22538529 22538551 8 84 2.0 0.5 1.2 3.6 107 chr3R 22538444 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538551 intron CG5326 - chr3R_8_22535001 chr3R_22535001 RAL-563 976 chr3R 22580664 22580671 chr3R 22580744 22580753 5 82 0.5 3.5 2.0 1.7 89 chr3R 22580664 intergenic CSN6 +,CG33110 + chr3R 22580708 intergenic CSN6 +,CG33110 + chr3R 22580753 intergenic CSN6 +,CG33110 + chr3R_5_22580001 chr3R_22580001 RAL-563 977 chr3R 22794526 22794543 chr3R 22794602 22794619 4 76 4.5 3.0 3.8 0.8 93 chr3R 22794526 intergenic CG7029 + chr3R 22794572 intergenic not near genes chr3R 22794619 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-563 978 chr3R 22846349 22846379 chr3R 22846827 22846855 7 477 1.0 2.0 1.5 2.8 506 chr3R 22846349 intergenic CG4704 - chr3R 22846602 intergenic CG4704 - chr3R 22846855 intergenic not near genes chr3R_7_22845001 chr3R_22845001 RAL-563 979 chr3R 22860160 22860174 chr3R 22860252 22860266 4 91 0.0 0.0 0.0 4.0 106 chr3R 22860160 intergenic not near genes chr3R 22860213 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-563 980 chr3R 22871438 22871463 chr3R 22871537 22871561 5 97 1.0 3.5 2.2 1.6 123 chr3R 22871438 intergenic not near genes chr3R 22871500 intergenic not near genes chr3R 22871561 intergenic not near genes chr3R_5_22870001 chr3R_22870001 RAL-563 981 chr3R 22904681 22904698 chr3R 22904925 22904943 9 245 3.5 1.0 2.2 2.8 262 chr3R 22904681 intron klg + chr3R 22904812 intron klg + chr3R 22904943 intron klg + chr3R_9_22900001 chr3R_22900001 RAL-563 982 chr3R 22974290 22974308 chr3R 22974372 22974391 4 83 0.0 3.0 1.5 1.6 101 chr3R 22974290 intergenic not near genes chr3R 22974340 intergenic not near genes chr3R 22974391 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-563 983 chr3R 23064175 23064205 chr3R 23064284 23064313 13 107 5.0 3.5 4.2 2.5 138 chr3R 23064175 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064313 exon CG17111 - chr3R_13_23060001 chr3R_23060001 RAL-563 984 chr3R 23064873 23064903 chr3R 23064964 23064994 7 91 0.0 0.5 0.2 5.8 121 chr3R 23064873 intron CG17111 - chr3R 23064934 intron CG17111 - chr3R 23064994 intron CG17111 - chr3R_7_23060001 chr3R_23060001 RAL-563 985 chr3R 23090412 23090435 chr3R 23090495 23090518 9 82 3.0 3.0 3.0 2.2 106 chr3R 23090412 intron CG13830 - chr3R 23090465 intron CG13830 - chr3R 23090518 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-563 986 chr3R 23100154 23100431 chr3R 23100240 23100512 12 86 6.0 3.0 4.5 2.2 358 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100333 intron,exon CG13830 -,CG6738 + chr3R 23100512 intron,exon CG13830 -,CG6738 + chr3R_12_23100001 chr3R_23100001 RAL-563 987 chr3R 23169534 23169552 chr3R 23169621 23169642 4 89 1.0 1.0 1.0 2.0 108 chr3R 23169534 intron Irk1 + chr3R 23169588 intron Irk1 + chr3R 23169642 intron Irk1 + chr3R_4_23165001 chr3R_23165001 RAL-563 988 chr3R 23210498 23210517 chr3R 23210578 23210597 4 80 0.0 1.0 0.5 2.7 99 chr3R 23210498 intron cnc - chr3R 23210548 intron cnc - chr3R 23210597 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-563 989 chr3R 23211984 23211993 chr3R 23212059 23212069 5 75 1.5 0.0 0.8 2.8 85 chr3R 23211984 intron cnc - chr3R 23212026 intron cnc - chr3R 23212069 intron cnc - chr3R_5_23210001 chr3R_23210001 RAL-563 990 chr3R 23245994 23246018 chr3R 23246073 23246100 7 77 2.5 1.0 1.8 2.5 106 chr3R 23245994 intron CG4467 - chr3R 23246047 intron CG4467 - chr3R 23246100 intron CG4467 - chr3R_7_23245001 chr3R_23245001 RAL-563 991 chr3R 23421686 23421981 chr3R 23421786 23422066 15 95 7.0 4.5 5.8 2.2 380 chr3R 23421686 intron CG4374 - chr3R 23421876 intron CG4374 - chr3R 23422066 intron CG4374 - chr3R_15_23420001 chr3R_23420001 RAL-563 992 chr3R 23421992 23422006 chr3R 23422069 23422090 9 82 4.0 2.0 3.0 2.2 98 chr3R 23421992 intron CG4374 - chr3R 23422041 intron CG4374 - chr3R 23422090 intron CG4374 - chr3R_9_23420001 chr3R_23420001 RAL-563 993 chr3R 23446278 23446309 chr3R 23446356 23446387 16 77 1.0 3.5 2.2 5.0 109 chr3R 23446278 intron CG4374 - chr3R 23446332 intron CG4374 - chr3R 23446387 intron CG4374 - chr3R_16_23445001 chr3R_23445001 RAL-563 994 chr3R 23453685 23453703 chr3R 23453757 23453781 6 77 3.0 1.0 2.0 2.0 96 chr3R 23453685 intron CG4374 - chr3R 23453733 intron CG4374 - chr3R 23453781 intron CG4374 - chr3R_6_23450001 chr3R_23450001 RAL-563 995 chr3R 23549150 23549182 chr3R 23549254 23549283 5 103 3.5 3.0 3.2 1.2 133 chr3R 23549150 intergenic not near genes chr3R 23549216 intergenic not near genes chr3R 23549283 intergenic not near genes chr3R_5_23545001 chr3R_23545001 RAL-563 996 chr3R 23558402 23558413 chr3R 23560183 23560194 Bari1 4 1781 1.0 3.0 2.0 1.3 1792 chr3R 23558402 intron beat-IV + chr3R 23559298 intron beat-IV + chr3R 23560194 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-563 997 chr3R 23562114 23562143 chr3R 23562214 23562238 8 99 4.0 3.0 3.5 1.8 124 chr3R 23562114 intron beat-IV + chr3R 23562176 intron beat-IV + chr3R 23562238 intron beat-IV + chr3R_8_23560001 chr3R_23560001 RAL-563 998 chr3R 23684697 23684724 chr3R 23685181 23685208 roo 5 476 3.5 9.5 6.5 0.7 511 chr3R 23684697 exon CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685208 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-563 999 chr3R 23915272 23915306 chr3R 23915363 23915376 7 83 2.0 3.5 2.8 1.8 104 chr3R 23915272 intron sba - chr3R 23915324 intron sba - chr3R 23915376 intron sba - chr3R_7_23915001 chr3R_23915001 RAL-563 1000 chr3R 23944912 23944935 chr3R 23944997 23945020 6 83 2.0 3.5 2.8 1.6 108 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-563 1001 chr3R 24015436 24015448 chr3R 24015513 24015525 4 77 0.0 3.5 1.8 1.4 89 chr3R 24015436 intron KrT95D - chr3R 24015480 intron KrT95D - chr3R 24015525 intron KrT95D - chr3R_4_24015001 chr3R_24015001 RAL-563 1002 chr3R 24021638 24021654 chr3R 24021728 24021744 4 90 0.5 0.5 0.5 2.7 106 chr3R 24021638 intron KrT95D - chr3R 24021691 intron KrT95D - chr3R 24021744 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-563 1003 chr3R 24072086 24072109 chr3R 24072523 24072538 jockey 6 432 7.5 0.0 3.8 1.2 452 chr3R 24072086 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-563 1004 chr3R 24076919 24076943 chr3R 24078383 24078409 hobo 7 1466 5.5 6.5 6.0 1.0 1490 chr3R 24076919 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078409 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-563 1005 chr3R 24100464 24100608 chr3R 24100559 24100832 8 175 0.0 0.0 0.0 8.0 368 chr3R 24100464 intron 4EHP - chr3R 24100648 intron 4EHP - chr3R 24100832 intron 4EHP - chr3R_8_24100001 chr3R_24100001 RAL-563 1006 chr3R 24199742 24199771 chr3R 24199822 24199851 9 78 0.0 3.0 1.5 3.6 109 chr3R 24199742 intron twin - chr3R 24199796 intron twin - chr3R 24199851 intron twin - chr3R_9_24195001 chr3R_24195001 RAL-563 1007 chr3R 24207233 24207244 chr3R 24212307 24212320 flea 5 5075 7.0 6.5 6.8 0.6 5087 chr3R 24207233 intron twin - chr3R 24209776 intron twin - chr3R 24212320 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-563 1008 chr3R 24291121 24291144 chr3R 24291204 24291230 16 83 5.0 3.0 4.0 3.2 109 chr3R 24291121 exon CG6364 + chr3R 24291176 intron CG6364 + chr3R 24291230 intron CG6364 + chr3R_16_24290001 chr3R_24290001 RAL-563 1009 chr3R 21907534 21907535 chr3R 24389465 24389465 4 2481930 10.0 6.5 8.2 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-563 1010 chr3R 24426287 24426315 chr3R 24426544 24426572 11 257 0.5 1.5 1.0 5.5 285 chr3R 24426287 intron nAChRalpha1 - chr3R 24426430 intron nAChRalpha1 - chr3R 24426572 intron nAChRalpha1 - chr3R_11_24425001 chr3R_24425001 RAL-563 1011 chr3R 24527806 24527824 chr3R 24527897 24527915 5 91 1.0 0.0 0.5 3.3 109 chr3R 24527806 intergenic CG6607 +,CG13618 + chr3R 24527860 intergenic CG6607 +,CG13618 + chr3R 24527915 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-563 1012 chr3R 24605549 24605556 chr3R 24605649 24605656 8 100 10.0 6.0 8.0 0.9 107 chr3R 24605549 intron mld + chr3R 24605602 intron mld + chr3R 24605656 intron mld + chr3R_8_24605001 chr3R_24605001 RAL-563 1013 chr3R 24730098 24730124 chr3R 24732466 24732480 Doc 8 2368 1.5 0.5 1.0 4.0 2382 chr3R 24730098 intron tok + chr3R 24731289 intron tok + chr3R 24732480 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-563 1014 chr3R 24785568 24785595 chr3R 24785652 24785680 8 84 2.0 4.5 3.2 1.9 112 chr3R 24785568 exon CG5805 - chr3R 24785624 intron CG5805 - chr3R 24785680 intron CG5805 - chr3R_8_24785001 chr3R_24785001 RAL-563 1015 chr3R 24927142 24927149 chr3R 24931932 24931940 Doc 4 4790 1.5 0.5 1.0 2.0 4798 chr3R 24927142 intergenic Trf4-2 + chr3R 24929541 intergenic not near genes chr3R 24931940 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-563 1016 chr3R 24974926 24974932 chr3R 24975004 24975011 4 78 1.0 6.0 3.5 0.9 85 chr3R 24974926 intergenic not near genes chr3R 24974968 intergenic not near genes chr3R 24975011 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-563 1017 chr3R 25004899 25004916 chr3R 25004982 25004999 7 83 0.0 6.5 3.2 1.7 100 chr3R 25004899 intron tnc + chr3R 25004949 intron tnc + chr3R 25004999 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-563 1018 chr3R 25053156 25053161 chr3R 25053240 25053246 4 84 0.0 14.0 7.0 0.5 90 chr3R 25053156 intergenic CG11791 +,CG31109 - chr3R 25053201 intergenic CG11791 +,CG31109 - chr3R 25053246 intergenic CG31109 -,CG11791 + chr3R_4_25050001 chr3R_25050001 RAL-563 1019 chr3R 25072757 25072792 chr3R 25072849 25072884 8 92 0.5 2.5 1.5 3.2 127 chr3R 25072757 3` UTR CG9996 - chr3R 25072820 3` UTR CG9996 - chr3R 25072884 3` UTR CG9996 - chr3R_8_25070001 chr3R_25070001 RAL-563 1020 chr3R 25173904 25173915 chr3R 25173984 25173995 6 78 7.0 7.5 7.2 0.7 91 chr3R 25173904 intron lobo - chr3R 25173950 intron lobo - chr3R 25173995 intron lobo - chr3R_6_25170001 chr3R_25170001 RAL-563 1021 chr3R 25235700 25235722 chr3R 25235790 25235812 4 90 2.0 0.5 1.2 1.8 112 chr3R 25235700 intergenic CG10420 - chr3R 25235756 intergenic CG10420 - chr3R 25235812 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-563 1022 chr3R 25612573 25612592 chr3R 25612671 25612690 7 97 2.5 3.5 3.0 1.8 117 chr3R 25612573 intron Npl4 - chr3R 25612632 intron Npl4 - chr3R 25612690 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-563 1023 chr3R 25689130 25689158 chr3R 25689238 25689266 5 107 3.0 5.0 4.0 1.0 136 chr3R 25689130 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689266 intergenic not near genes chr3R_5_25685001 chr3R_25685001 RAL-563 1024 chr3R 25718698 25718705 chr3R 25718786 25718790 5 88 5.0 1.0 3.0 1.2 92 chr3R 25718698 intron LpR2 - chr3R 25718744 intron LpR2 - chr3R 25718790 intron LpR2 - chr3R_5_25715001 chr3R_25715001 RAL-563 1025 chr3R 25738628 25738663 chr3R 25738716 25738751 5 88 1.0 1.5 1.2 2.3 123 chr3R 25738628 intron LpR2 - chr3R 25738690 intron LpR2 - chr3R 25738751 intron LpR2 - chr3R_5_25735001 chr3R_25735001 RAL-563 1026 chr3R 25832694 25832718 chr3R 25841876 25841900 roo 9 9181 2.0 3.5 2.8 2.4 9206 chr3R 25832694 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-563 1027 chr3R 26013852 26013865 chr3R 26013932 26013945 4 80 3.5 0.0 1.8 1.4 93 chr3R 26013852 intergenic not near genes chr3R 26013898 intergenic not near genes chr3R 26013945 intergenic not near genes chr3R_4_26010001 chr3R_26010001 RAL-563 1028 chr3R 26289731 26289752 chr3R 26289811 26289833 4 81 1.5 2.0 1.8 1.4 102 chr3R 26289731 intergenic not near genes chr3R 26289782 intergenic not near genes chr3R 26289833 intergenic not near genes chr3R_4_26285001 chr3R_26285001 RAL-563 1029 chr3R 26312608 26312628 chr3R 26312685 26312705 4 77 1.0 1.0 1.0 2.0 97 chr3R 26312608 intergenic not near genes chr3R 26312656 intergenic not near genes chr3R 26312705 intergenic not near genes chr3R_4_26310001 chr3R_26310001 RAL-563 1030 chr3R 26376324 26376348 chr3R 26385483 26385507 roo 7 9159 4.0 0.0 2.0 2.3 9183 chr3R 26376324 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385507 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-563 1031 chr3R 26529347 26529376 chr3R 26529430 26529459 6 83 1.5 0.0 0.8 3.3 112 chr3R 26529347 intron plum - chr3R 26529403 intron plum - chr3R 26529459 intron plum - chr3R_6_26525001 chr3R_26525001 RAL-563 1032 chr3R 26556573 26556607 chr3R 26556650 26556682 5 76 0.0 0.5 0.2 4.2 109 chr3R 26556573 intron scrib + chr3R 26556628 intron scrib + chr3R 26556682 intron scrib + chr3R_5_26555001 chr3R_26555001 RAL-563 1033 chr3R 26623699 26623709 chr3R 26623875 26623885 4 176 4.0 1.5 2.8 1.1 186 chr3R 26623699 intergenic TwdlB - chr3R 26623792 intergenic TwdlB - chr3R 26623885 intergenic TwdlB - chr3R_4_26620001 chr3R_26620001 RAL-563 1034 chr3R 26908031 26908061 chr3R 26908128 26908132 11 94 1.5 5.5 3.5 2.4 101 chr3R 26908031 intron T48 + chr3R 26908082 intron T48 + chr3R 26908132 intron T48 + chr3R_11_26905001 chr3R_26905001 RAL-563 1035 chr3R 27028722 27028746 chr3R 27028801 27028825 5 79 1.5 1.5 1.5 2.0 103 chr3R 27028722 intron RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-563 1036 chr3R 27030222 27030246 chr3R 27030351 27030375 4 129 1.5 0.0 0.8 2.2 153 chr3R 27030222 intron RYa-R + chr3R 27030298 intron RYa-R + chr3R 27030375 intron RYa-R + chr3R_4_27030001 chr3R_27030001 RAL-563 1037 chr3R 27101551 27101564 chr3R 27101657 27101670 6 106 1.0 3.5 2.2 1.9 119 chr3R 27101551 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101670 intron CG17189 + chr3R_6_27100001 chr3R_27100001 RAL-563 1038 chr3R 27140514 27140545 chr3R 27148124 27148155 412 9 7608 2.5 2.0 2.2 2.8 7641 chr3R 27140514 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148155 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-563 1039 chr3R 27152377 27152408 chr3R 27152463 27152494 9 86 4.0 3.5 3.8 1.9 117 chr3R 27152377 intron Men-b + chr3R 27152436 intron Men-b + chr3R 27152494 intron Men-b + chr3R_9_27150001 chr3R_27150001 RAL-563 1040 chr3R 27377485 27377503 chr3R 27377558 27377591 7 85 4.0 3.0 3.5 1.6 106 chr3R 27377485 3` UTR side - chr3R 27377538 3` UTR side - chr3R 27377591 3` UTR side - chr3R_7_27375001 chr3R_27375001 RAL-563 1041 chr3R 27449167 27449192 chr3R 27449245 27449271 5 76 0.5 3.0 1.8 1.8 104 chr3R 27449167 intergenic not near genes chr3R 27449219 intergenic not near genes chr3R 27449271 intergenic not near genes chr3R_5_27445001 chr3R_27445001 RAL-563 1042 chr3R 27470889 27470916 chr3R 27471002 27471029 8 111 0.5 1.0 0.8 4.4 140 chr3R 27470889 intergenic not near genes chr3R 27470959 intergenic not near genes chr3R 27471029 intergenic not near genes chr3R_8_27470001 chr3R_27470001 RAL-563 1043 chr3R 27480999 27481030 chr3R 27481084 27481089 7 82 2.0 2.5 2.2 2.2 90 chr3R 27480999 3` UTR Cyp6a18 + chr3R 27481044 3` UTR Cyp6a18 + chr3R 27481089 3` UTR Cyp6a18 + chr3R_7_27480001 chr3R_27480001 RAL-563 1044 chr3R 27692762 27692779 chr3R 27692859 27692876 7 97 2.0 5.0 3.5 1.6 114 chr3R 27692762 3` UTR CG12880 + chr3R 27692819 intergenic CG12880 + chr3R 27692876 intergenic CG12880 + chr3R_7_27690001 chr3R_27690001 RAL-563 1045 chr3R 27718576 27718589 chr3R 27718655 27718668 4 79 4.0 2.5 3.2 1.0 92 chr3R 27718576 intergenic not near genes chr3R 27718622 intergenic not near genes chr3R 27718668 intergenic not near genes chr3R_4_27715001 chr3R_27715001 RAL-563 1046 chr3R 27723083 27723118 chr3R 27723205 27723240 7 122 2.0 1.5 1.8 2.5 157 chr3R 27723083 intergenic not near genes chr3R 27723162 intergenic not near genes chr3R 27723240 intergenic not near genes chr3R_7_27720001 chr3R_27720001 RAL-563 1047 chr3R 27799940 27799962 chr3R 27800020 27800044 4 82 2.0 1.5 1.8 1.4 104 chr3R 27799940 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-563 1048 chr3R 27856761 27856778 chr3R 27858244 27858261 hopper2 4 1482 2.0 0.5 1.2 1.8 1500 chr3R 27856761 intron CG34353 - chr3R 27857511 intron CG34353 - chr3R 27858261 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-563 1049 chr3R 28068496 28068510 chr3R 28073938 28073951 I-element 4 5442 1.0 0.5 0.8 2.2 5455 chr3R 28068496 intron CG34362 + chr3R 28071224 intron CG34362 + chr3R 28073951 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-563 1050 chr3R 28110173 28110203 chr3R 28110253 28110265 6 73 1.0 3.0 2.0 2.0 92 chr3R 28110173 intergenic not near genes chr3R 28110219 intergenic not near genes chr3R 28110265 intergenic not near genes chr3R_6_28110001 chr3R_28110001 RAL-563 1051 chr3R 28126729 28126756 chr3R 28126815 28126842 9 84 2.5 4.5 3.5 2.0 113 chr3R 28126729 intergenic not near genes chr3R 28126786 intergenic not near genes chr3R 28126842 intergenic not near genes chr3R_9_28125001 chr3R_28125001 RAL-563 1052 chr3R 28131428 28131455 chr3R 28131610 28131637 9 181 0.5 1.0 0.8 5.0 209 chr3R 28131428 intergenic not near genes chr3R 28131532 intergenic not near genes chr3R 28131637 intergenic not near genes chr3R_9_28130001 chr3R_28130001 RAL-563 1053 chr3R 28253346 28253364 chr3R 28255853 28255874 jockey 7 2509 2.0 3.5 2.8 1.8 2528 chr3R 28253346 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255874 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-563 1054 chr3R 28302105 28302127 chr3R 28302538 28302566 jockey 10 436 0.0 3.5 1.8 3.6 461 chr3R 28302105 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302566 intergenic not near genes chr3R_10_28300001 chr3R_28300001 RAL-563 1055 chr3R 28407706 28407739 chr3R 28407792 28407825 9 85 5.5 4.0 4.8 1.6 119 chr3R 28407706 intergenic not near genes chr3R 28407766 intergenic not near genes chr3R 28407825 intergenic not near genes chr3R_9_28405001 chr3R_28405001 RAL-563 1056 chr3R 28805684 28805697 chr3R 28805761 28805775 4 77 2.5 2.5 2.5 1.1 91 chr3R 28805684 intergenic not near genes chr3R 28805730 intergenic not near genes chr3R 28805775 intergenic not near genes chr3R_4_28805001 chr3R_28805001 RAL-563 1057 chr3R 28823107 28823141 chr3R 28823184 28823209 8 75 1.5 2.0 1.8 2.9 102 chr3R 28823107 exon CG1647 + chr3R 28823158 exon CG1647 + chr3R 28823209 exon CG1647 + chr3R_8_28820001 chr3R_28820001 RAL-563 1058 chr3R 21907534 21907534 chr3R 28831799 28831803 43 6924267 10.0 15.0 12.5 3.2 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-563 1059 chr3R 28845195 28845214 chr3R 28845277 28845286 5 82 2.5 3.0 2.8 1.3 91 chr3R 28845195 intergenic spg +,Apc - chr3R 28845240 intergenic spg +,Apc - chr3R 28845286 intergenic spg + chr3R_5_28845001 chr3R_28845001 RAL-563 1060 chr3R 29011830 29011863 chr3R 29012143 29012178 16 312 0.0 2.5 1.2 7.3 348 chr3R 29011830 intron wat - chr3R 29012004 intron wat - chr3R 29012178 intron wat - chr3R_16_29010001 chr3R_29010001 RAL-563 1061 chr3R 29046487 29046512 chr3R 29046565 29046593 7 80 3.0 1.0 2.0 2.3 106 chr3R 29046487 3` UTR Pkc98E + chr3R 29046540 3` UTR Pkc98E + chr3R 29046593 3` UTR Pkc98E + chr3R_7_29045001 chr3R_29045001 RAL-563 1062 chr3R 29151950 29151965 chr3R 29152037 29152057 4 90 0.0 0.5 0.2 3.3 107 chr3R 29151950 intergenic Slbp -,ligatin - chr3R 29152004 intergenic Slbp -,ligatin - chr3R 29152057 intergenic Slbp -,ligatin - chr3R_4_29150001 chr3R_29150001 RAL-563 1063 chr3R 29159121 29159146 chr3R 29159207 29159232 8 86 2.0 1.0 1.5 3.2 111 chr3R 29159121 intron CG11897 + chr3R 29159176 intron CG11897 + chr3R 29159232 intron CG11897 + chr3R_8_29155001 chr3R_29155001 RAL-563 1064 chr3R 29213059 29213091 chr3R 29213142 29213173 11 83 1.5 0.5 1.0 5.5 114 chr3R 29213059 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213173 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-563 1065 chr3R 29237267 29237281 chr3R 29239285 29239302 12 2019 20.5 6.0 13.2 0.8 2035 chr3R 29237267 exon CG11951 - chr3R 29238284 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_12_29235001 chr3R_29235001 RAL-563 1066 chr3R 29237390 29237416 chr3R 29238010 29238038 5 621 17.0 26.5 21.8 0.2 648 chr3R 29237390 intron CG11951 - chr3R 29237714 exon CG11951 - chr3R 29238038 exon CG11951 - chr3R_5_29235001 chr3R_29235001 RAL-563 1067 chr3R 29239227 29239246 chr3R 29245518 29245537 7 6289 3.5 9.0 6.2 1.0 6310 chr3R 29239227 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245537 exon SP1029 - chr3R_7_29240001 chr3R_29240001 RAL-563 1068 chr3R 29249622 29249647 chr3R 29249708 29249733 6 86 1.0 2.0 1.5 2.4 111 chr3R 29249622 intron SP1029 - chr3R 29249678 intron SP1029 - chr3R 29249733 intron SP1029 - chr3R_6_29245001 chr3R_29245001 RAL-563 1069 chr3R 29256272 29256296 chr3R 29256351 29256376 10 80 2.5 2.0 2.2 3.1 104 chr3R 29256272 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256376 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-563 1070 chr3R 29334234 29334238 chr3R 29334313 29334315 4 78 5.0 10.5 7.8 0.5 81 chr3R 29334234 intergenic not near genes chr3R 29334274 intergenic not near genes chr3R 29334315 intergenic not near genes chr3R_4_29330001 chr3R_29330001 RAL-563 1071 chr3R 29334240 29334243 chr3R 29334308 29334321 7 75 5.0 10.5 7.8 0.8 81 chr3R 29334240 intergenic not near genes chr3R 29334280 intergenic not near genes chr3R 29334321 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-563 1072 chr3R 29406631 29406646 chr3R 29407903 29407932 jockey 9 1284 1.5 6.5 4.0 1.8 1301 chr3R 29406631 intron Ptp99A + chr3R 29407282 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_9_29405001 chr3R_29405001 RAL-563 1073 chr3R 29415611 29415638 chr3R 29415774 29415801 10 164 19.5 22.5 21.0 0.5 190 chr3R 29415611 intron Ptp99A + chr3R 29415706 intron Ptp99A + chr3R 29415801 intron Ptp99A + chr3R_10_29415001 chr3R_29415001 RAL-563 1074 chr3R 29429790 29429804 chr3R 29429868 29429882 4 78 0.0 2.5 1.2 1.8 92 chr3R 29429790 intron Ptp99A + chr3R 29429836 intron Ptp99A + chr3R 29429882 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-563 1075 chr3R 29447818 29447848 chr3R 29447925 29447955 5 107 2.0 2.5 2.2 1.6 137 chr3R 29447818 intron Ptp99A + chr3R 29447886 intron Ptp99A + chr3R 29447955 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-563 1076 chr3R 29505909 29505921 chr3R 29505986 29505998 4 77 0.5 5.5 3.0 1.0 89 chr3R 29505909 intergenic not near genes chr3R 29505954 intergenic not near genes chr3R 29505998 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-563 1077 chr3R 29539439 29539461 chr3R 29539515 29539537 7 76 2.0 0.0 1.0 3.5 98 chr3R 29539439 intergenic not near genes chr3R 29539488 intergenic not near genes chr3R 29539537 intergenic not near genes chr3R_7_29535001 chr3R_29535001 RAL-563 1078 chr3R 29708559 29708589 chr3R 29708637 29708655 9 76 1.0 1.0 1.0 4.5 96 chr3R 29708559 intergenic not near genes chr3R 29708607 intergenic not near genes chr3R 29708655 intergenic not near genes chr3R_9_29705001 chr3R_29705001 RAL-563 1079 chr3R 29738265 29738292 chr3R 29739732 29739759 hobo 9 1466 1.5 1.0 1.2 4.1 1494 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739759 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-563 1080 chr3R 29758943 29758970 chr3R 29759017 29759046 12 75 2.0 1.5 1.8 4.3 103 chr3R 29758943 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759046 intergenic CR44953 - chr3R_12_29755001 chr3R_29755001 RAL-563 1081 chr3R 29773876 29773898 chr3R 29773967 29773986 11 90 6.0 1.5 3.8 2.3 110 chr3R 29773876 intron kay + chr3R 29773931 intron kay + chr3R 29773986 intron kay + chr3R_11_29770001 chr3R_29770001 RAL-563 1082 chr3R 29963487 29963508 chr3R 29963580 29963610 8 100 2.0 1.0 1.5 3.2 123 chr3R 29963487 intron TkR99D - chr3R 29963548 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-563 1083 chr3R 30084866 30084884 chr3R 30086314 30086351 hobo 7 1464 4.5 3.0 3.8 1.5 1485 chr3R 30084866 intron sima + chr3R 30085608 intron sima + chr3R 30086351 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-563 1084 chr3R 30097489 30097659 chr3R 30097570 30097798 8 101 2.0 4.5 3.2 1.9 309 chr3R 30097489 intron sima + chr3R 30097644 intron sima + chr3R 30097798 intron sima + chr3R_8_30095001 chr3R_30095001 RAL-563 1085 chr3R 30238759 30238792 chr3R 30239923 30239949 1360 5 1163 2.0 0.5 1.2 2.3 1190 chr3R 30238759 intergenic not near genes chr3R 30239354 intergenic not near genes chr3R 30239949 intergenic not near genes chr3R_5_30235001 chr3R_30235001 RAL-563 1086 chr3R 30262574 30262605 chr3R 30262671 30262702 8 97 1.0 0.0 0.5 5.3 128 chr3R 30262574 intergenic not near genes chr3R 30262638 intergenic not near genes chr3R 30262702 intergenic not near genes chr3R_8_30260001 chr3R_30260001 RAL-563 1087 chr3R 30268257 30268434 chr3R 30268336 30268504 5 78 3.0 2.0 2.5 1.4 247 chr3R 30268257 intergenic not near genes chr3R 30268380 intergenic not near genes chr3R 30268504 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-563 1088 chr3R 30317334 30317358 chr3R 30324926 30324950 roo 5 7592 0.0 3.5 1.8 1.8 7616 chr3R 30317334 intron hdc + chr3R 30321142 intron hdc + chr3R 30324950 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-563 1089 chr3R 30332032 30332056 chr3R 30332111 30332135 11 79 1.5 4.5 3.0 2.8 103 chr3R 30332032 intron hdc + chr3R 30332084 intron hdc + chr3R 30332135 intron hdc + chr3R_11_30330001 chr3R_30330001 RAL-563 1090 chr3R 30375540 30375569 chr3R 30383165 30383194 412 5 7625 0.5 2.0 1.2 2.3 7654 chr3R 30375540 intergenic not near genes chr3R 30379367 intergenic not near genes chr3R 30383194 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-563 1091 chr3R 30396222 30396247 chr3R 30404488 30404512 roo 4 8265 0.5 3.0 1.8 1.4 8290 chr3R 30396222 intergenic not near genes chr3R 30400367 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-563 1092 chr3R 30480473 30480508 chr3R 30482941 30482976 jockey 9 2467 2.0 6.0 4.0 1.8 2503 chr3R 30480473 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482976 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-563 1093 chr3R 30627601 30627630 chr3R 30627681 30627703 19 78 5.5 2.5 4.0 3.8 102 chr3R 30627601 3` UTR CG2267 - chr3R 30627652 exon CG2267 - chr3R 30627703 exon CG2267 - chr3R_19_30625001 chr3R_30625001 RAL-563 1094 chr3R 30690162 30690192 chr3R 30690245 30690276 10 80 0.5 3.5 2.0 3.3 114 chr3R 30690162 intergenic Spn100A + chr3R 30690219 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-563 1095 chr3R 30938418 30938434 chr3R 30938495 30938509 4 76 0.0 2.0 1.0 2.0 91 chr3R 30938418 intergenic not near genes chr3R 30938464 intergenic not near genes chr3R 30938509 intergenic not near genes chr3R_4_30935001 chr3R_30935001 RAL-563 1096 chr3R 31042116 31042143 chr3R 31042203 31042230 4 86 1.0 2.5 1.8 1.4 114 chr3R 31042116 intron CanA1 + chr3R 31042173 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-563 1097 chr3R 31069645 31069677 chr3R 31069740 31069772 5 92 1.5 4.5 3.0 1.2 127 chr3R 31069645 intron Sox100B + chr3R 31069708 intron Sox100B + chr3R 31069772 intron Sox100B + chr3R_5_31065001 chr3R_31065001 RAL-563 1098 chr3R 31074234 31074250 chr3R 31081832 31081848 springer 7 7598 2.0 0.0 1.0 3.5 7614 chr3R 31074234 intron Sox100B + chr3R 31078041 intron Sox100B + chr3R 31081848 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-563 1099 chr3R 31087102 31087132 chr3R 31087614 31087626 9 508 1.5 2.5 2.0 3.0 524 chr3R 31087102 intergenic not near genes chr3R 31087364 intergenic not near genes chr3R 31087626 intergenic not near genes chr3R_9_31085001 chr3R_31085001 RAL-563 1100 chr3R 31188029 31188052 chr3R 31188130 31188153 7 101 3.0 3.0 3.0 1.8 124 chr3R 31188029 intron mesh - chr3R 31188091 intron mesh - chr3R 31188153 intron mesh - chr3R_7_31185001 chr3R_31185001 RAL-563 1101 chr3R 31220141 31220163 chr3R 31220600 31220621 4 459 0.0 1.0 0.5 2.7 480 chr3R 31220141 intergenic not near genes chr3R 31220381 intergenic CG12054 + chr3R 31220621 intergenic CG12054 + chr3R_4_31220001 chr3R_31220001 RAL-563 1102 chr3R 31413093 31413123 chr3R 31418293 31418311 copia 13 5199 3.5 0.0 1.8 4.6 5218 chr3R 31413093 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_13_31415001 chr3R_31415001 RAL-563 1103 chr3R 31530838 31530846 chr3R 31531142 31531169 5 310 3.0 2.0 2.5 1.4 331 chr3R 31530838 intergenic not near genes chr3R 31531004 intergenic not near genes chr3R 31531169 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-563 1104 chr3R 31691533 31691558 chr3R 31696299 31696324 Doc 11 4766 4.0 4.5 4.2 2.1 4791 chr3R 31691533 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696324 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-563 1105 chr3R 31691560 31691564 chr3R 31696298 31696313 Doc 6 4746 4.0 4.5 4.2 1.2 4753 chr3R 31691560 intergenic not near genes chr3R 31693936 intergenic not near genes chr3R 31696313 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-563 1106 chr3R 31699732 31699752 chr3R 31699805 31699834 11 79 3.0 3.0 3.0 2.8 102 chr3R 31699732 intergenic not near genes chr3R 31699783 intergenic not near genes chr3R 31699834 intergenic not near genes chr3R_11_31695001 chr3R_31695001 RAL-563 1107 chr3R 31829400 31829413 chr3R 31829457 31829488 6 66 4.0 6.0 5.0 1.0 88 chr3R 31829400 intron RhoGAP100F + chr3R 31829444 intron RhoGAP100F + chr3R 31829488 intron RhoGAP100F + chr3R_6_31825001 chr3R_31825001 RAL-563 1108 chr3R 31874846 31874877 chr3R 31874922 31874953 8 76 1.5 2.0 1.8 2.9 107 chr3R 31874846 intron heph - chr3R 31874900 intron heph - chr3R 31874953 intron heph - chr3R_8_31870001 chr3R_31870001 RAL-563 1109 chr3R 31885678 31885704 chr3R 31885754 31885781 4 77 2.0 2.0 2.0 1.3 103 chr3R 31885678 intron heph - chr3R 31885730 intron heph - chr3R 31885781 intron heph - chr3R_4_31885001 chr3R_31885001 RAL-563 1110 chr3R 31998000 31998013 chr3R 32005470 32005483 blood 7 7469 1.0 3.5 2.2 2.2 7483 chr3R 31998000 intron heph - chr3R 32001742 intron heph - chr3R 32005483 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-563 1111 chr4 959627 959649 chr4 959806 959814 8 177 1.0 2.0 1.5 3.2 187 chr4 959627 intergenic CR44030 +,CR45201 - chr4 959720 5` UTR CR44030 + chr4 959814 5` UTR CR44030 + chr4_8_955001 chr4_955001 RAL-563 1112 chrX 551421 551454 chrX 558983 559016 412 10 7560 3.0 1.0 2.0 3.3 7595 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559016 intron Appl + chrX_10_555001 chrX_555001 RAL-563 1113 chrX 611138 611164 chrX 611228 611254 5 88 1.5 0.0 0.8 2.8 116 chrX 611138 intron CG13366 - chrX 611196 intron CG13366 - chrX 611254 intron CG13366 - chrX_5_610001 chrX_610001 RAL-563 1114 chrX 670264 670294 chrX 670344 670368 11 78 0.5 1.5 1.0 5.5 104 chrX 670264 intergenic not near genes chrX 670316 intergenic not near genes chrX 670368 intergenic not near genes chrX_11_670001 chrX_670001 RAL-563 1115 chrX 680841 680857 chrX 680920 680938 7 82 4.5 3.5 4.0 1.4 97 chrX 680841 intergenic not near genes chrX 680890 intergenic not near genes chrX 680938 intergenic not near genes chrX_7_680001 chrX_680001 RAL-563 1116 chrX 706813 706829 chrX 707177 707193 6 364 0.0 5.5 2.8 1.6 380 chrX 706813 intron sdk + chrX 707003 intron sdk + chrX 707193 intron sdk + chrX_6_705001 chrX_705001 RAL-563 1117 chrX 778134 778156 chrX 778224 778232 8 87 6.0 0.0 3.0 2.0 98 chrX 778134 intron fz3 + chrX 778183 intron fz3 + chrX 778232 intron fz3 + chrX_8_775001 chrX_775001 RAL-563 1118 chrX 802298 802311 chrX 802368 802368 5 70 4.0 3.0 3.5 1.1 70 chrX 802298 exon CG13359 - chrX 802333 exon CG13359 - chrX 802368 exon CG13359 - chrX_5_800001 chrX_800001 RAL-563 1119 chrX 802312 802317 chrX 802366 802392 4 70 3.0 1.5 2.2 1.2 80 chrX 802312 exon CG13359 - chrX 802352 exon CG13359 - chrX 802392 exon CG13359 - chrX_4_800001 chrX_800001 RAL-563 1120 chrX 806782 806814 chrX 806878 806910 7 96 3.5 2.0 2.8 1.8 128 chrX 806782 intron Sec22 + chrX 806846 intron Sec22 + chrX 806910 intron Sec22 + chrX_7_805001 chrX_805001 RAL-563 1121 chrX 826382 826412 chrX 826543 826573 10 160 2.0 1.5 1.8 3.6 191 chrX 826382 intron CG43867 - chrX 826478 intron CG43867 - chrX 826573 intron CG43867 - chrX_10_825001 chrX_825001 RAL-563 1122 chrX 906724 906732 chrX 908513 908521 S-element 4 1789 2.5 8.0 5.2 0.6 1797 chrX 906724 intron CG43867 - chrX 907622 intron CG43867 - chrX 908521 intron CG43867 - chrX_4_905001 chrX_905001 RAL-563 1123 chrX 1163301 1163325 chrX 1163378 1163402 6 77 2.5 1.5 2.0 2.0 101 chrX 1163301 intergenic CG34320 - chrX 1163352 intergenic CG34320 - chrX 1163402 intergenic CG34320 - chrX_6_1160001 chrX_1160001 RAL-563 1124 chrX 1218482 1218487 chrX 1218576 1218581 5 94 1.0 2.5 1.8 1.8 99 chrX 1218482 3` UTR CG3638 - chrX 1218532 3` UTR CG3638 - chrX 1218581 3` UTR CG3638 - chrX_5_1215001 chrX_1215001 RAL-563 1125 chrX 1253743 1253759 chrX 1253819 1253841 6 79 4.0 2.0 3.0 1.5 98 chrX 1253743 intron Atf3 - chrX 1253792 intron Atf3 - chrX 1253841 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-563 1126 chrX 1357776 1357802 chrX 1367946 1367972 Doc 7 10170 2.5 1.5 2.0 2.3 10196 chrX 1357776 intergenic png - chrX 1362874 intergenic not near genes chrX 1367972 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-563 1127 chrX 1440105 1440129 chrX 1440196 1440222 9 89 3.5 7.5 5.5 1.4 117 chrX 1440105 exon futsch + chrX 1440164 exon futsch + chrX 1440222 exon futsch + chrX_9_1440001 chrX_1440001 RAL-563 1128 chrX 1518038 1518072 chrX 1523440 1523471 jockey 5 5400 3.0 1.5 2.2 1.6 5433 chrX 1518038 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523471 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-563 1129 chrX 1627977 1628002 chrX 1635440 1635470 gtwin 12 7466 7.0 2.5 4.8 2.1 7493 chrX 1627977 intron,intron Mur2B -,br + chrX 1631724 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_12_1630001 chrX_1630001 RAL-563 1130 chrX 1954892 1954917 chrX 1962831 1962856 Stalker2 4 7936 3.0 1.0 2.0 1.3 7964 chrX 1954892 intron Hr4 + chrX 1958874 intron Hr4 + chrX 1962856 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-563 1131 chrX 1990231 1990244 chrX 1990352 1990366 7 122 1.0 8.0 4.5 1.3 135 chrX 1990231 intron Hr4 + chrX 1990298 intron Hr4 + chrX 1990366 intron Hr4 + chrX_7_1990001 chrX_1990001 RAL-563 1132 chrX 2023969 2023988 chrX 2024092 2024109 4 122 4.5 4.5 4.5 0.7 140 chrX 2023969 3` UTR,3` UTR east +,Actn - chrX 2024039 3` UTR,3` UTR east +,Actn - chrX 2024109 3` UTR,3` UTR east +,Actn - chrX_4_2020001 chrX_2020001 RAL-563 1133 chrX 2020882 2020888 chrX 2025614 2025616 4 4727 18.5 9.5 14.0 0.3 4734 chrX 2020882 exon east + chrX 2023249 3` UTR east + chrX 2025616 exon Actn - chrX_4_2020001 chrX_2020001 RAL-563 1134 chrX 2098559 2098560 chrX 13486742 13486742 5 11388184 3.0 7.0 5.0 0.8 11388183 chrX 2098559 intron csw + chrX 7792650 intergenic not near genes chrX 13486742 intron Neto + chrX_5_7790001 chrX_7790001 RAL-563 1135 chrX 2385729 2385762 chrX 2385808 2385841 5 79 1.5 1.5 1.5 2.0 112 chrX 2385729 5` UTR PsGEF - chrX 2385785 intron PsGEF - chrX 2385841 intron PsGEF - chrX_5_2385001 chrX_2385001 RAL-563 1136 chrX 2544025 2544041 chrX 2544364 2544380 6 339 6.0 2.5 4.2 1.2 355 chrX 2544025 intron trol - chrX 2544202 intron trol - chrX 2544380 intron trol - chrX_6_2540001 chrX_2540001 RAL-563 1137 chrX 2578813 2578846 chrX 2578905 2578936 9 91 0.5 2.0 1.2 4.1 123 chrX 2578813 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-563 1138 chrX 2844900 2844930 chrX 2852309 2852332 mdg1 5 7408 1.0 0.5 0.8 2.8 7432 chrX 2844900 intron kirre + chrX 2848616 intron kirre + chrX 2852332 intron kirre + chrX_5_2845001 chrX_2845001 RAL-563 1139 chrX 2886672 2886680 chrX 2886762 2886770 4 90 0.0 5.0 2.5 1.1 98 chrX 2886672 intron kirre + chrX 2886721 intron kirre + chrX 2886770 intron kirre + chrX_4_2885001 chrX_2885001 RAL-563 1140 chrX 2888113 2888141 chrX 2888191 2888217 10 77 3.5 1.5 2.5 2.9 104 chrX 2888113 intron kirre + chrX 2888165 intron kirre + chrX 2888217 intron kirre + chrX_10_2885001 chrX_2885001 RAL-563 1141 chrX 2932244 2932252 chrX 2932299 2932335 5 77 2.5 2.5 2.5 1.4 91 chrX 2932244 intron,exon kirre +,CG32793 + chrX 2932290 intron,exon kirre +,CG32793 + chrX 2932335 intron,exon kirre +,CG32793 + chrX_5_2930001 chrX_2930001 RAL-563 1142 chrX 3075636 3075667 chrX 3080942 3080973 Transpac 5 5306 0.5 1.5 1.0 2.5 5337 chrX 3075636 intron kirre + chrX 3078304 intron kirre + chrX 3080973 intron kirre + chrX_5_3075001 chrX_3075001 RAL-563 1143 chrX 3351806 3351810 chrX 3351891 3351896 4 86 3.0 5.0 4.0 0.8 90 chrX 3351806 intergenic not near genes chrX 3351851 intergenic not near genes chrX 3351896 intergenic not near genes chrX_4_3350001 chrX_3350001 RAL-563 1144 chrX 3493099 3493121 chrX 3502258 3502280 roo 9 9158 1.0 0.5 0.8 5.0 9181 chrX 3493099 intron,intron CR44999 +,Gas8 - chrX 3497690 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-563 1145 chrX 3597554 3597578 chrX 3619722 3619746 roo 10 22168 1.0 2.0 1.5 4.0 22192 chrX 3597554 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_10_3605001 chrX_3605001 RAL-563 1146 chrX 3620476 3620495 chrX 3620575 3620593 4 98 0.0 2.5 1.2 1.8 117 chrX 3620476 intron AstA-R1 + chrX 3620534 intron AstA-R1 + chrX 3620593 intron AstA-R1 + chrX_4_3620001 chrX_3620001 RAL-563 1147 chrX 3657417 3657446 chrX 3657497 3657526 6 79 0.5 2.0 1.2 2.7 109 chrX 3657417 intron AstA-R1 + chrX 3657472 intron AstA-R1 + chrX 3657526 intron AstA-R1 + chrX_6_3655001 chrX_3655001 RAL-563 1148 chrX 3726765 3726797 chrX 3730162 3730194 NOF 9 3397 0.5 4.5 2.5 2.6 3429 chrX 3726765 intron tlk + chrX 3728480 intron tlk + chrX 3730194 intron tlk + chrX_9_3725001 chrX_3725001 RAL-563 1149 chrX 3769732 3769748 chrX 3769812 3769813 4 76 1.5 3.0 2.2 1.2 81 chrX 3769732 intron tlk + chrX 3769772 intron tlk + chrX 3769813 intron tlk + chrX_4_3765001 chrX_3765001 RAL-563 1150 chrX 3986870 3986893 chrX 3994503 3994523 412 5 7632 2.0 4.0 3.0 1.2 7653 chrX 3986870 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994523 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-563 1151 chrX 4029530 4029557 chrX 4029720 4029746 12 187 2.0 2.0 2.0 4.0 216 chrX 4029530 intergenic not near genes chrX 4029638 intergenic not near genes chrX 4029746 intergenic not near genes chrX_12_4025001 chrX_4025001 RAL-563 1152 chrX 4101888 4101897 chrX 4101968 4101977 5 79 1.0 3.0 2.0 1.7 89 chrX 4101888 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101977 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-563 1153 chrX 4656060 4656085 chrX 4656146 4656172 7 87 6.5 8.0 7.2 0.9 112 chrX 4656060 intron Cbp80 + chrX 4656116 intron Cbp80 + chrX 4656172 intron Cbp80 + chrX_7_4655001 chrX_4655001 RAL-563 1154 chrX 4700408 4700425 chrX 4700751 4700762 jockey 5 341 0.0 4.0 2.0 1.7 354 chrX 4700408 3` UTR ctp + chrX 4700585 3` UTR ctp + chrX 4700762 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-563 1155 chrX 4731815 4731829 chrX 4736907 4736922 jockey 7 5093 5.5 6.0 5.8 1.0 5107 chrX 4731815 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736922 intergenic not near genes chrX_7_4730001 chrX_4730001 RAL-563 1156 chrX 4763262 4763276 chrX 4763749 4763750 Stalker4 5 485 1.0 1.5 1.2 2.3 488 chrX 4763262 intergenic not near genes chrX 4763506 intergenic not near genes chrX 4763750 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-563 1157 chrX 4792396 4792409 chrX 4792829 4792842 jockey 6 433 4.0 7.0 5.5 0.9 446 chrX 4792396 intergenic not near genes chrX 4792619 intergenic not near genes chrX 4792842 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-563 1158 chrX 1562990 1562990 chrX 4805472 4805477 opus 4 3242486 11.5 7.5 9.5 0.4 3242487 chrX 1562990 intron Mur2B - chrX 3184234 intron dnc + chrX 4805477 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-563 1159 chrX 4827997 4828001 chrX 4835345 4835371 Stalker4 7 7359 4.0 3.0 3.5 1.6 7374 chrX 4827997 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835371 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-563 1160 chrX 5220390 5220411 chrX 5220631 5220651 4 241 0.0 1.0 0.5 2.7 261 chrX 5220390 intron,intron CG15465 +,rg + chrX 5220520 intron,intron CG15465 +,rg + chrX 5220651 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-563 1161 chrX 5345441 5345463 chrX 5345553 5345575 4 112 1.5 1.0 1.2 1.8 134 chrX 5345441 intron SK + chrX 5345508 intron SK + chrX 5345575 intron SK + chrX_4_5345001 chrX_5345001 RAL-563 1162 chrX 5786576 5786607 chrX 5786659 5786675 5 80 1.5 1.5 1.5 2.0 99 chrX 5786576 intron CG42699 + chrX 5786626 intron CG42699 + chrX 5786675 intron CG42699 + chrX_5_5785001 chrX_5785001 RAL-563 1163 chrX 5892144 5892179 chrX 5892236 5892270 8 91 2.0 0.0 1.0 4.0 126 chrX 5892144 intron CR45668 - chrX 5892207 intron CR45668 - chrX 5892270 intron CR45668 - chrX_8_5890001 chrX_5890001 RAL-563 1164 chrX 6171593 6171612 chrX 6179026 6179045 Quasimodo 4 7433 1.0 1.0 1.0 2.0 7452 chrX 6171593 intron Ca-alpha1T - chrX 6175319 intron Ca-alpha1T - chrX 6179045 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-563 1165 chrX 6215340 6215362 chrX 6215423 6215445 8 83 1.5 2.0 1.8 2.9 105 chrX 6215340 intergenic not near genes chrX 6215392 intergenic not near genes chrX 6215445 intergenic not near genes chrX_8_6215001 chrX_6215001 RAL-563 1166 chrX 6263848 6263860 chrX 6263929 6263941 4 81 1.5 3.5 2.5 1.1 93 chrX 6263848 intron schlank - chrX 6263894 intron schlank - chrX 6263941 intron schlank - chrX_4_6260001 chrX_6260001 RAL-563 1167 chrX 6335223 6335243 chrX 6337733 6337752 Tirant 9 2510 0.0 2.5 1.2 4.1 2529 chrX 6335223 intergenic not near genes chrX 6336488 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_9_6335001 chrX_6335001 RAL-563 1168 chrX 6392873 6392904 chrX 6397638 6397669 Doc 6 4763 2.5 2.5 2.5 1.7 4796 chrX 6392873 intergenic not near genes chrX 6395271 intergenic not near genes chrX 6397669 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-563 1169 chrX 6469875 6469907 chrX 6470193 6470224 16 316 2.0 1.0 1.5 6.4 349 chrX 6469875 intron CG42340 - chrX 6470050 intron CG42340 - chrX 6470224 intron CG42340 - chrX_16_6470001 chrX_6470001 RAL-563 1170 chrX 6562820 6562830 chrX 6571300 6571312 Tirant 4 8480 6.0 2.0 4.0 0.8 8492 chrX 6562820 intron CG34417 + chrX 6567066 intron CG34417 + chrX 6571312 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-563 1171 chrX 6562833 6562851 chrX 6571298 6571333 Tirant 12 8475 2.5 1.0 1.8 4.3 8500 chrX 6562833 intron CG34417 + chrX 6567083 intron CG34417 + chrX 6571333 intron CG34417 + chrX_12_6565001 chrX_6565001 RAL-563 1172 chrX 6897577 6897707 chrX 6897655 6897817 7 104 0.0 0.0 0.0 7.0 240 chrX 6897577 intergenic not near genes chrX 6897697 intergenic not near genes chrX 6897817 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-563 1173 chrX 7023600 7023631 chrX 7030990 7031021 Tabor 12 7388 3.0 1.0 2.0 4.0 7421 chrX 7023600 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031021 intron CG12541 - chrX_12_7025001 chrX_7025001 RAL-563 1174 chrX 7125260 7125277 chrX 7134419 7134436 roo 5 9159 0.5 1.5 1.0 2.5 9176 chrX 7125260 intergenic not near genes chrX 7129848 intergenic not near genes chrX 7134436 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-563 1175 chrX 7702906 7702931 chrX 7703343 7703370 jockey 8 438 2.5 3.0 2.8 2.1 464 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-563 1176 chrX 7708292 7708302 chrX 7708457 7708457 4 162 7.5 0.0 3.8 0.8 165 chrX 7708292 intron,5` UTR CHES-1-like -,CR43287 + chrX 7708374 intron,5` UTR CHES-1-like -,CR43287 + chrX 7708457 intron,intron CHES-1-like -,CR43287 + chrX_4_7705001 chrX_7705001 RAL-563 1177 chrX 8085572 8085597 chrX 8085658 8085683 8 86 1.5 1.0 1.2 3.6 111 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085628 intron,5` UTR CG2256 -,CR45535 + chrX 8085683 intron,5` UTR CG2256 -,CR45535 + chrX_8_8085001 chrX_8085001 RAL-563 1178 chrX 8138735 8138765 chrX 8138980 8139010 4 245 1.5 1.0 1.2 1.8 275 chrX 8138735 3` UTR Smox - chrX 8138872 3` UTR Smox - chrX 8139010 3` UTR Smox - chrX_4_8135001 chrX_8135001 RAL-563 1179 chrX 8340205 8340229 chrX 8340317 8340341 4 108 0.5 4.0 2.2 1.2 136 chrX 8340205 intron nAChRalpha3 - chrX 8340273 intron nAChRalpha3 - chrX 8340341 intron nAChRalpha3 - chrX_4_8340001 chrX_8340001 RAL-563 1180 chrX 8371156 8371174 chrX 8371315 8371317 4 156 0.5 0.0 0.2 3.3 161 chrX 8371156 intergenic not near genes chrX 8371236 intergenic not near genes chrX 8371317 intergenic not near genes chrX_4_8370001 chrX_8370001 RAL-563 1181 chrX 8922338 8922363 chrX 8922772 8922794 jockey 13 433 1.5 1.5 1.5 5.2 456 chrX 8922338 intron rdgA + chrX 8922566 intron rdgA + chrX 8922794 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-563 1182 chrX 9337947 9337971 chrX 9338039 9338059 8 91 3.0 2.5 2.8 2.1 112 chrX 9337947 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338059 exon CG34449 - chrX_8_9335001 chrX_9335001 RAL-563 1183 chrX 9575801 9575821 chrX 9576113 9576145 mdg3 7 321 3.0 0.5 1.8 2.5 344 chrX 9575801 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-563 1184 chrX 9617003 9617017 chrX 9617082 9617096 4 78 1.5 0.5 1.0 2.0 93 chrX 9617003 intron CG42797 + chrX 9617050 intron CG42797 + chrX 9617096 intron CG42797 + chrX_4_9615001 chrX_9615001 RAL-563 1185 chrX 9791869 9791885 chrX 9791966 9791982 5 96 1.0 2.5 1.8 1.8 113 chrX 9791869 intron CG32698 + chrX 9791926 intron CG32698 + chrX 9791982 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-563 1186 chrX 10550853 10550888 chrX 10552318 10552354 hobo 7 1466 1.0 4.5 2.8 1.8 1501 chrX 10550853 intron spri - chrX 10551604 intron spri - chrX 10552354 intron spri - chrX_7_10550001 chrX_10550001 RAL-563 1187 chrX 10772692 10772697 chrX 10772758 10772780 Tirant 5 79 1.5 1.0 1.2 2.3 88 chrX 10772692 intron CG15211 + chrX 10772736 intron CG15211 + chrX 10772780 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-563 1188 chrX 11009889 11009894 chrX 11009970 11009976 5 82 4.0 3.0 3.5 1.1 87 chrX 11009889 intron CG42339 - chrX 11009932 intron CG42339 - chrX 11009976 intron CG42339 - chrX_5_11005001 chrX_11005001 RAL-563 1189 chrX 11254745 11254777 chrX 11254834 11254866 5 89 1.0 1.0 1.0 2.5 121 chrX 11254745 intron CG44422 - chrX 11254806 intron CG44422 - chrX 11254866 intron CG44422 - chrX_5_11250001 chrX_11250001 RAL-563 1190 chrX 11312083 11312090 chrX 11319415 11319442 Stalker2 10 7348 0.5 1.5 1.0 5.0 7359 chrX 11312083 intergenic not near genes chrX 11315762 intergenic not near genes chrX 11319442 intergenic not near genes chrX_10_11315001 chrX_11315001 RAL-563 1191 chrX 11434221 11434248 chrX 11434304 11434331 4 83 0.5 0.0 0.2 3.3 110 chrX 11434221 intron Evi5 - chrX 11434276 intron Evi5 - chrX 11434331 intron Evi5 - chrX_4_11430001 chrX_11430001 RAL-563 1192 chrX 11922369 11922379 chrX 11922505 11922515 4 136 2.0 0.5 1.2 1.8 146 chrX 11922369 exon Sclp - chrX 11922442 intron Sclp - chrX 11922515 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-563 1193 chrX 12301955 12301985 chrX 12303260 12303290 X-element 4 1303 1.0 0.0 0.5 2.7 1335 chrX 12301955 intron Ten-a + chrX 12302622 intron Ten-a + chrX 12303290 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-563 1194 chrX 12350775 12350806 chrX 12350854 12350886 5 79 1.5 1.5 1.5 2.0 111 chrX 12350775 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350886 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-563 1195 chrX 12356860 12356874 chrX 12356962 12356986 7 110 1.0 1.0 1.0 3.5 126 chrX 12356860 intergenic not near genes chrX 12356923 intergenic not near genes chrX 12356986 intergenic not near genes chrX_7_12355001 chrX_12355001 RAL-563 1196 chrX 12535734 12535745 chrX 12535821 12535832 4 87 8.0 2.0 5.0 0.7 98 chrX 12535734 intron CG43921 - chrX 12535783 intron CG43921 - chrX 12535832 intron CG43921 - chrX_4_12535001 chrX_12535001 RAL-563 1197 chrX 13061361 13061370 chrX 13061468 13061481 6 110 2.0 1.0 1.5 2.4 120 chrX 13061361 intron rad + chrX 13061421 intron rad + chrX 13061481 intron rad + chrX_6_13060001 chrX_13060001 RAL-563 1198 chrX 13429481 13429493 chrX 13430630 13430642 jockey 4 1149 0.0 3.0 1.5 1.6 1161 chrX 13429481 intergenic not near genes chrX 13430062 intergenic not near genes chrX 13430642 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-563 1199 chrX 13442141 13442167 chrX 13442232 13442257 5 91 2.0 3.0 2.5 1.4 116 chrX 13442141 intergenic not near genes chrX 13442199 intergenic not near genes chrX 13442257 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-563 1200 chrX 13937985 13938006 chrX 13941256 13941277 I-element 4 3271 1.0 1.0 1.0 2.0 3292 chrX 13937985 intron mamo - chrX 13939631 intron mamo - chrX 13941277 intron mamo - chrX_4_13935001 chrX_13935001 RAL-563 1201 chrX 14487845 14487851 chrX 14487927 14487946 4 84 1.5 2.0 1.8 1.4 101 chrX 14487845 intergenic not near genes chrX 14487896 intergenic not near genes chrX 14487946 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-563 1202 chrX 14572882 14572907 chrX 14572969 14572978 8 84 2.0 0.0 1.0 4.0 96 chrX 14572882 intergenic not near genes chrX 14572930 intergenic not near genes chrX 14572978 intergenic not near genes chrX_8_14570001 chrX_14570001 RAL-563 1203 chrX 14636460 14636480 chrX 14641901 14641904 I-element 5 5438 4.5 3.0 3.8 1.0 5444 chrX 14636460 intron NetA - chrX 14639182 intron NetA - chrX 14641904 intron NetA - chrX_5_14635001 chrX_14635001 RAL-563 1204 chrX 14636483 14636493 chrX 14641898 14641934 I-element 7 5436 3.5 3.0 3.2 1.7 5451 chrX 14636483 intron NetA - chrX 14639208 intron NetA - chrX 14641934 intron NetA - chrX_7_14635001 chrX_14635001 RAL-563 1205 chrX 14767947 14767963 chrX 14768027 14768043 4 80 4.5 0.0 2.2 1.2 96 chrX 14767947 intergenic not near genes chrX 14767995 intergenic not near genes chrX 14768043 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-563 1206 chrX 14813751 14813767 chrX 14813829 14813845 6 78 0.5 3.0 1.8 2.1 94 chrX 14813751 intron rut - chrX 14813798 intron rut - chrX 14813845 intron rut - chrX_6_14810001 chrX_14810001 RAL-563 1207 chrX 14952436 14952463 chrX 14952603 14952631 6 168 1.0 3.0 2.0 2.0 195 chrX 14952436 intron,3` UTR pdgy -,CR44831 - chrX 14952534 intron,3` UTR pdgy -,CR44831 - chrX 14952631 intron,3` UTR pdgy -,CR44831 - chrX_6_14950001 chrX_14950001 RAL-563 1208 chrX 14984706 14984721 chrX 14984795 14984810 8 89 0.5 2.5 1.5 3.2 104 chrX 14984706 intron eag + chrX 14984758 intron eag + chrX 14984810 intron eag + chrX_8_14980001 chrX_14980001 RAL-563 1209 chrX 15273719 15273736 chrX 15274868 15274886 1360 8 1157 1.5 4.0 2.8 2.1 1167 chrX 15273719 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274886 intergenic not near genes chrX_8_15270001 chrX_15270001 RAL-563 1210 chrX 15413049 15413082 chrX 15417351 15417367 Juan 4 4296 4.5 2.5 3.5 0.9 4318 chrX 15413049 intron Cngl - chrX 15415208 intron Cngl - chrX 15417367 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-563 1211 chrX 15678054 15678067 chrX 15678115 15678137 6 73 1.5 3.0 2.2 1.9 83 chrX 15678054 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678137 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-563 1212 chrX 15681395 15681423 chrX 15681476 15681505 4 82 0.0 2.5 1.2 1.8 110 chrX 15681395 intergenic not near genes chrX 15681450 intergenic not near genes chrX 15681505 intergenic not near genes chrX_4_15680001 chrX_15680001 RAL-563 1213 chrX 16689625 16689641 chrX 16689711 16689726 5 86 4.0 1.5 2.8 1.3 101 chrX 16689625 intron Sep4 - chrX 16689676 intron Sep4 - chrX 16689726 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-563 1214 chrX 16689642 16689654 chrX 16689707 16689717 11 72 1.5 1.5 1.5 4.4 75 chrX 16689642 intron Sep4 - chrX 16689680 intron Sep4 - chrX 16689717 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-563 1215 chrX 16841412 16841421 chrX 16841490 16841495 4 77 3.5 1.5 2.5 1.1 83 chrX 16841412 exon RSG7 - chrX 16841454 intron RSG7 - chrX 16841495 intron RSG7 - chrX_4_16840001 chrX_16840001 RAL-563 1216 chrX 16897349 16897372 chrX 16897426 16897443 4 75 0.0 0.5 0.2 3.3 94 chrX 16897349 intergenic CG33252 - chrX 16897396 intergenic CG33252 - chrX 16897443 intergenic CG33252 - chrX_4_16895001 chrX_16895001 RAL-563 1217 chrX 17556941 17556954 chrX 17557440 17557453 mdg1 6 498 3.5 2.0 2.8 1.6 512 chrX 17556941 intron CG43658 - chrX 17557197 intron CG43658 - chrX 17557453 intron CG43658 - chrX_6_17555001 chrX_17555001 RAL-563 1218 chrX 17680892 17680920 chrX 17680966 17680997 13 74 0.0 4.5 2.2 4.1 105 chrX 17680892 intron chas - chrX 17680944 intron chas - chrX 17680997 intron chas - chrX_13_17680001 chrX_17680001 RAL-563 1219 chrX 17716587 17716604 chrX 17716674 17716690 6 86 1.5 1.5 1.5 2.4 103 chrX 17716587 intron CG42684 + chrX 17716638 intron CG42684 + chrX 17716690 intron CG42684 + chrX_6_17715001 chrX_17715001 RAL-563 1220 chrX 17782571 17782598 chrX 17782660 17782687 9 87 3.0 6.5 4.8 1.6 116 chrX 17782571 intergenic not near genes chrX 17782629 intergenic not near genes chrX 17782687 intergenic not near genes chrX_9_17780001 chrX_17780001 RAL-563 1221 chrX 17994894 17994907 chrX 17994972 17994972 4 76 2.0 5.0 3.5 0.9 78 chrX 17994894 intron Sh - chrX 17994933 intron Sh - chrX 17994972 intron Sh - chrX_4_17990001 chrX_17990001 RAL-563 1222 chrX 18128219 18128245 chrX 18131053 18131078 13 2834 24.5 29.5 27.0 0.5 2859 chrX 18128219 5` UTR mir-210 + chrX 18129648 3` UTR CG43133 - chrX 18131078 3` UTR ari-1 - chrX_13_18125001 chrX_18125001 RAL-563 1223 chrX 18194071 18194099 chrX 18194606 18194634 BS 7 535 0.5 2.5 1.5 2.8 563 chrX 18194071 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194634 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-563 1224 chrX 18427386 18427396 chrX 18427797 18427807 4 411 2.0 2.0 2.0 1.3 421 chrX 18427386 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427807 intergenic not near genes chrX_4_18425001 chrX_18425001 RAL-563 1225 chrX 18562374 18562395 chrX 18562445 18562471 4 75 1.0 1.0 1.0 2.0 97 chrX 18562374 intron Bx + chrX 18562422 intron Bx + chrX 18562471 intron Bx + chrX_4_18560001 chrX_18560001 RAL-563 1226 chrX 18896526 18896535 chrX 18896637 18896646 4 111 1.0 2.0 1.5 1.6 120 chrX 18896526 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896646 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-563 1227 chrX 18896914 18896918 chrX 18896991 18896994 4 76 9.5 4.5 7.0 0.5 80 chrX 18896914 intergenic CG7349 + chrX 18896954 intergenic CG7349 + chrX 18896994 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-563 1228 chrX 18896919 18896932 chrX 18896987 18897009 8 76 7.0 4.5 5.8 1.2 90 chrX 18896919 intergenic CG7349 + chrX 18896964 intergenic CG7349 + chrX 18897009 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-563 1229 chrX 19014358 19014383 chrX 19014437 19014462 5 78 2.0 3.5 2.8 1.3 104 chrX 19014358 intron CG43759 + chrX 19014410 intron CG43759 + chrX 19014462 intron CG43759 + chrX_5_19010001 chrX_19010001 RAL-563 1230 chrX 19125694 19125717 chrX 19125823 19125846 8 128 2.0 2.5 2.2 2.5 152 chrX 19125694 intron tgy - chrX 19125770 intron tgy - chrX 19125846 intron tgy - chrX_8_19125001 chrX_19125001 RAL-563 1231 chrX 19176212 19176239 chrX 19176294 19176323 15 83 4.5 2.5 3.5 3.3 111 chrX 19176212 3` UTR CG7556 - chrX 19176268 3` UTR CG7556 - chrX 19176323 3` UTR CG7556 - chrX_15_19175001 chrX_19175001 RAL-563 1232 chrX 19292353 19292377 chrX 19292446 19292470 4 90 1.5 0.0 0.8 2.2 117 chrX 19292353 intron CG8034 - chrX 19292412 intron CG8034 - chrX 19292470 intron CG8034 - chrX_4_19290001 chrX_19290001 RAL-563 1233 chrX 19315764 19315784 chrX 19315858 19315885 6 94 6.0 0.5 3.2 1.4 121 chrX 19315764 intron out - chrX 19315824 intron out - chrX 19315885 intron out - chrX_6_19315001 chrX_19315001 RAL-563 1234 chrX 19472121 19472158 chrX 19472691 19472728 jockey 7 569 2.0 1.0 1.5 2.8 607 chrX 19472121 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472728 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-563 1235 chrX 19593952 19593976 chrX 19594036 19594057 6 84 2.5 4.5 3.5 1.3 105 chrX 19593952 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594057 intron CG14205 + chrX_6_19590001 chrX_19590001 RAL-563 1236 chrX 19710083 19710104 chrX 19711868 19711890 S-element 8 1786 1.0 3.5 2.2 2.5 1807 chrX 19710083 intron meso18E - chrX 19710986 intron meso18E - chrX 19711890 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-563 1237 chrX 19822837 19822864 chrX 19823004 19823031 10 165 4.5 0.5 2.5 2.9 194 chrX 19822837 intergenic not near genes chrX 19822934 intergenic skpE - chrX 19823031 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-563 1238 chrX 19838504 19838521 chrX 19838582 19838588 5 75 3.5 1.5 2.5 1.4 84 chrX 19838504 intron pico - chrX 19838546 intron pico - chrX 19838588 intron pico - chrX_5_19835001 chrX_19835001 RAL-563 1239 chrX 19983872 19983897 chrX 19983952 19983976 4 77 2.0 0.0 1.0 2.0 104 chrX 19983872 intergenic not near genes chrX 19983924 intergenic not near genes chrX 19983976 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-563 1240 chrX 20052784 20052814 chrX 20052868 20052898 4 83 1.0 0.0 0.5 2.7 114 chrX 20052784 intron Dop2R - chrX 20052841 intron Dop2R - chrX 20052898 intron Dop2R - chrX_4_20050001 chrX_20050001 RAL-563 1241 chrX 20082751 20082783 chrX 20082833 20082866 7 83 4.0 0.5 2.2 2.2 115 chrX 20082751 intergenic not near genes chrX 20082808 intergenic not near genes chrX 20082866 intergenic not near genes chrX_7_20080001 chrX_20080001 RAL-563 1242 chrX 20105196 20105202 chrX 20105299 20105305 4 104 16.5 17.0 16.8 0.2 109 chrX 20105196 intergenic not near genes chrX 20105250 intergenic not near genes chrX 20105305 intergenic not near genes chrX_4_20105001 chrX_20105001 RAL-563 1243 chrX 20105195 20105201 chrX 20105307 20105330 11 106 16.5 16.0 16.2 0.6 135 chrX 20105195 intergenic not near genes chrX 20105262 intergenic not near genes chrX 20105330 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-563 1244 chrX 20312883 20312910 chrX 20312961 20312988 5 78 3.5 2.0 2.8 1.3 105 chrX 20312883 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20312988 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-563 1245 chrX 20374106 20374120 chrX 20374181 20374195 8 76 1.0 3.0 2.0 2.7 89 chrX 20374106 intergenic not near genes chrX 20374150 intergenic not near genes chrX 20374195 intergenic not near genes chrX_8_20370001 chrX_20370001 RAL-563 1246 chrX 20377326 20377349 chrX 20378792 20378816 hobo 8 1465 1.5 3.0 2.2 2.5 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-563 1247 chrX 20443172 20443205 chrX 20443248 20443281 7 76 1.5 1.5 1.5 2.8 109 chrX 20443172 exon CG1695 + chrX 20443226 intron CG1695 + chrX 20443281 intron CG1695 + chrX_7_20440001 chrX_20440001 RAL-563 1248 chrX 20504126 20504151 chrX 20505647 20505669 transib2 4 1520 1.0 2.5 1.8 1.4 1543 chrX 20504126 intron RhoGAP19D - chrX 20504898 intron RhoGAP19D - chrX 20505669 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-563 1249 chrX 20940723 20940755 chrX 20942192 20942224 hobo 10 1468 2.5 2.0 2.2 3.1 1501 chrX 20940723 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942224 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-563 1250 chrX 21268068 21268086 chrX 21268149 21268167 4 80 1.0 1.0 1.0 2.0 99 chrX 21268068 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268167 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-563 1251 chrX 21458695 21458726 chrX 21464130 21464162 Ivk 5 5436 2.0 4.0 3.0 1.2 5467 chrX 21458695 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464162 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-563 1252 chrX 21516989 21517021 chrX 21517066 21517100 7 78 1.5 3.0 2.2 2.2 111 chrX 21516989 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517100 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-563 1253 chrX 21565414 21565440 chrX 21565491 21565518 4 78 0.5 1.0 0.8 2.2 104 chrX 21565414 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565518 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-563 1254 chrX 22448276 22448284 chrX 22448415 22448423 8 139 1.5 2.0 1.8 2.9 147 chrX 22448276 intron CG14615 - chrX 22448350 intron CG14615 - chrX 22448423 intron CG14615 - chrX_8_22445001 chrX_22445001 RAL-563 1255 chrX 22661981 22662003 chrX 22662080 22662102 6 99 0.0 0.0 0.0 6.0 121 chrX 22661981 intron CR44997 + chrX 22662042 intron CR44997 + chrX 22662102 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-563 1256 chrX 22697523 22697523 chrX 22701809 22701820 Juan 4 4293 2.0 4.5 3.2 1.0 4297 chrX 22697523 intron CR44997 + chrX 22699672 intron CR44997 + chrX 22701820 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-563 1257 chrX 22798776 22798797 chrX 22798893 22798912 4 116 2.5 0.0 1.2 1.8 136 chrX 22798776 intergenic not near genes chrX 22798844 intergenic not near genes chrX 22798912 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-563 1258 chrX 22824439 22824448 chrX 22824570 22824581 4 132 0.0 0.5 0.2 3.3 142 chrX 22824439 3` UTR fog - chrX 22824510 3` UTR fog - chrX 22824581 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-563 1259 chrX 22895724 22895760 chrX 22895842 22895870 11 113 1.5 1.0 1.2 5.0 146 chrX 22895724 intergenic not near genes chrX 22895797 intergenic not near genes chrX 22895870 intergenic not near genes chrX_11_22895001 chrX_22895001 RAL-563 1260 chrY 311343 311346 chrY 311460 311460 5 116 2.0 0.5 1.2 2.3 117 chrY 311343 intergenic not near genes chrY 311402 intergenic not near genes chrY 311460 intergenic not near genes chrY_5_310001 chrY_310001 RAL-563 1261 chrY 975805 975822 chrY 975882 975925 4 92 86.0 101.0 93.5 0.0 120 chrY 975805 intergenic not near genes chrY 975865 intergenic not near genes chrY 975925 intergenic not near genes chrY_4_975001 chrY_975001 RAL-563