SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47489 chr2L 52565 52594 jockey 10 5105 5.5 5.0 5.2 1.6 5134 chr2L 47460 intron Cda5 - chr2L 50027 intron Cda5 - chr2L 52594 intron Cda5 - chr2L_10_50001 chr2L_50001 RAL-555 2 chr2L 263306 263329 chr2L 263452 263475 6 146 2.0 7.0 4.5 1.1 169 chr2L 263306 intron,3` UTR CG3645 -,CG17075 - chr2L 263390 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-555 3 chr2L 263065 263090 chr2L 267687 267712 8 4623 25.0 15.5 20.2 0.4 4647 chr2L 263065 intron,3` UTR CG3645 -,CG17075 - chr2L 265388 intron,exon CG3645 -,CG17075 - chr2L 267712 intron CG3645 - chr2L_8_265001 chr2L_265001 RAL-555 4 chr2L 347886 347915 chr2L 355386 355415 blood 8 7500 3.5 2.0 2.8 2.1 7529 chr2L 347886 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_8_350001 chr2L_350001 RAL-555 5 chr2L 395745 395775 chr2L 395827 395857 7 82 3.5 5.5 4.5 1.3 112 chr2L 395745 intergenic CR43718 + chr2L 395801 intergenic CR43718 + chr2L 395857 intergenic CR43718 + chr2L_7_395001 chr2L_395001 RAL-555 6 chr2L 467356 467365 chr2L 467455 467464 5 99 4.0 6.5 5.2 0.8 108 chr2L 467356 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467464 intron CG4297 - chr2L_5_465001 chr2L_465001 RAL-555 7 chr2L 544834 544857 chr2L 544917 544940 4 83 1.0 3.5 2.2 1.2 106 chr2L 544834 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544887 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544940 3` UTR Ets21C - chr2L_4_540001 chr2L_540001 RAL-555 8 chr2L 558955 558985 chr2L 559067 559097 19 112 3.5 0.5 2.0 6.3 142 chr2L 558955 intron rempA - chr2L 559026 intron rempA - chr2L 559097 intron rempA - chr2L_19_555001 chr2L_555001 RAL-555 9 chr2L 630310 630333 chr2L 630402 630424 7 91 3.0 0.0 1.5 2.8 114 chr2L 630310 intergenic not near genes chr2L 630367 intergenic not near genes chr2L 630424 intergenic not near genes chr2L_7_630001 chr2L_630001 RAL-555 10 chr2L 686916 686952 chr2L 695956 695992 roo 13 9040 0.5 3.5 2.0 4.3 9076 chr2L 686916 intron ds - chr2L 691454 intron ds - chr2L 695992 intron ds - chr2L_13_690001 chr2L_690001 RAL-555 11 chr2L 753820 753854 chr2L 753909 753943 15 89 2.5 2.0 2.2 4.7 123 chr2L 753820 intron GABA-B-R3 + chr2L 753882 intron GABA-B-R3 + chr2L 753943 intron GABA-B-R3 + chr2L_15_750001 chr2L_750001 RAL-555 12 chr2L 764564 764592 chr2L 764645 764673 14 81 2.0 3.0 2.5 4.0 109 chr2L 764564 intergenic not near genes chr2L 764618 intergenic not near genes chr2L 764673 intergenic not near genes chr2L_14_760001 chr2L_760001 RAL-555 13 chr2L 770465 770492 chr2L 772245 772272 Bari1 6 1780 2.0 2.0 2.0 2.0 1807 chr2L 770465 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772272 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-555 14 chr2L 791449 791481 chr2L 791543 791575 9 94 0.0 2.5 1.2 4.1 126 chr2L 791449 intergenic not near genes chr2L 791512 intergenic not near genes chr2L 791575 intergenic not near genes chr2L_9_790001 chr2L_790001 RAL-555 15 chr2L 927862 927883 chr2L 928014 928035 5 152 1.5 4.5 3.0 1.2 173 chr2L 927862 intron CG4341 + chr2L 927948 intron CG4341 + chr2L 928035 intron CG4341 + chr2L_5_925001 chr2L_925001 RAL-555 16 chr2L 1035560 1035589 chr2L 1035635 1035666 7 77 2.0 3.0 2.5 2.0 106 chr2L 1035560 intron IA-2 - chr2L 1035613 intron IA-2 - chr2L 1035666 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-555 17 chr2L 1042620 1042628 chr2L 1042697 1042705 4 77 3.0 0.0 1.5 1.6 85 chr2L 1042620 intron IA-2 - chr2L 1042662 intron IA-2 - chr2L 1042705 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-555 18 chr2L 1066095 1066127 chr2L 1066176 1066206 7 80 3.5 5.0 4.2 1.3 111 chr2L 1066095 intron S - chr2L 1066150 intron S - chr2L 1066206 intron S - chr2L_7_1065001 chr2L_1065001 RAL-555 19 chr2L 1087284 1087310 chr2L 1087570 1087594 6 286 0.5 0.5 0.5 4.0 310 chr2L 1087284 intron CG4629 - chr2L 1087439 intron CG4629 - chr2L 1087594 intron CG4629 - chr2L_6_1085001 chr2L_1085001 RAL-555 20 chr2L 1205361 1205392 chr2L 1205449 1205480 7 88 2.0 3.0 2.5 2.0 119 chr2L 1205361 intergenic CG14342 + chr2L 1205420 intergenic CG14342 + chr2L 1205480 intergenic CG14342 + chr2L_7_1205001 chr2L_1205001 RAL-555 21 chr2L 1220131 1220161 chr2L 1227597 1227627 blood 14 7466 5.5 4.0 4.8 2.4 7496 chr2L 1220131 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_14_1220001 chr2L_1220001 RAL-555 22 chr2L 1301752 1301785 chr2L 1302289 1302324 gypsy 4 538 0.0 4.5 2.2 1.2 572 chr2L 1301752 intergenic not near genes chr2L 1302038 intergenic not near genes chr2L 1302324 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-555 23 chr2L 1322023 1322056 chr2L 1322112 1322145 5 89 2.0 1.5 1.8 1.8 122 chr2L 1322023 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322145 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-555 24 chr2L 1418410 1418440 chr2L 1418491 1418522 4 81 6.5 4.0 5.2 0.6 112 chr2L 1418410 intron lea - chr2L 1418466 intron lea - chr2L 1418522 intron lea - chr2L_4_1415001 chr2L_1415001 RAL-555 25 chr2L 1503425 1503446 chr2L 1503503 1503524 8 78 3.0 2.5 2.8 2.1 99 chr2L 1503425 intron CR44064 + chr2L 1503474 intron CR44064 + chr2L 1503524 intron CR44064 + chr2L_8_1500001 chr2L_1500001 RAL-555 26 chr2L 1570686 1570716 chr2L 1573558 1573588 F-element 8 2872 4.5 2.0 3.2 1.9 2902 chr2L 1570686 intron haf + chr2L 1572137 intron haf + chr2L 1573588 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-555 27 chr2L 1576381 1576404 chr2L 1576529 1576552 8 148 4.0 4.5 4.2 1.5 171 chr2L 1576381 intron haf + chr2L 1576466 intron haf + chr2L 1576552 intron haf + chr2L_8_1575001 chr2L_1575001 RAL-555 28 chr2L 1597855 1597888 chr2L 1597931 1597964 12 75 1.0 2.0 1.5 4.8 109 chr2L 1597855 intron,intron haf +,CG31935 - chr2L 1597910 intron,intron haf +,CG31935 - chr2L 1597964 intron,intron haf +,CG31935 - chr2L_12_1595001 chr2L_1595001 RAL-555 29 chr2L 1615384 1615411 chr2L 1615466 1615493 5 82 0.0 2.0 1.0 2.5 109 chr2L 1615384 intergenic not near genes chr2L 1615438 intergenic not near genes chr2L 1615493 intergenic not near genes chr2L_5_1615001 chr2L_1615001 RAL-555 30 chr2L 1678958 1679010 chr2L 1686441 1686475 blood 7 7468 0.0 4.0 2.0 2.3 7517 chr2L 1678958 intron chinmo + chr2L 1682716 intron chinmo + chr2L 1686475 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-555 31 chr2L 1711354 1711389 chr2L 1711678 1711712 mdg3 12 324 0.5 4.0 2.2 3.8 358 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_12_1710001 chr2L_1710001 RAL-555 32 chr2L 1721827 1721850 chr2L 1721910 1721934 9 84 0.0 2.5 1.2 4.1 107 chr2L 1721827 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721934 intron Rim2 - chr2L_9_1720001 chr2L_1720001 RAL-555 33 chr2L 1724805 1724840 chr2L 1724887 1724922 16 82 3.0 4.0 3.5 3.6 117 chr2L 1724805 3` UTR Eno - chr2L 1724864 3` UTR Eno - chr2L 1724922 3` UTR Eno - chr2L_16_1720001 chr2L_1720001 RAL-555 34 chr2L 1763112 1763114 chr2L 1763200 1763202 5 88 9.0 7.0 8.0 0.6 90 chr2L 1763112 intergenic not near genes chr2L 1763157 intergenic not near genes chr2L 1763202 intergenic not near genes chr2L_5_1760001 chr2L_1760001 RAL-555 35 chr2L 1875411 1875418 chr2L 1875488 1875495 5 76 4.0 3.5 3.8 1.0 84 chr2L 1875411 intron CG31663 - chr2L 1875453 intron CG31663 - chr2L 1875495 intron CG31663 - chr2L_5_1875001 chr2L_1875001 RAL-555 36 chr2L 1946728 1946748 chr2L 1946804 1946824 8 76 5.0 0.5 2.8 2.1 96 chr2L 1946728 5` UTR CG33673 - chr2L 1946776 intergenic CG33673 - chr2L 1946824 intergenic CG33673 - chr2L_8_1945001 chr2L_1945001 RAL-555 37 chr2L 1957091 1957105 chr2L 1957169 1957184 4 79 2.0 2.0 2.0 1.3 93 chr2L 1957091 intron erm - chr2L 1957138 intron erm - chr2L 1957184 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-555 38 chr2L 2047806 2047832 chr2L 2047999 2048027 7 195 2.0 0.0 1.0 3.5 221 chr2L 2047806 3` UTR Kebab + chr2L 2047916 3` UTR Kebab + chr2L 2048027 3` UTR Kebab + chr2L_7_2045001 chr2L_2045001 RAL-555 39 chr2L 2100376 2100403 chr2L 2109527 2109551 roo 20 9151 6.0 2.0 4.0 4.0 9175 chr2L 2100376 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_20_2100001 chr2L_2100001 RAL-555 40 chr2L 2112121 2112142 chr2L 2119783 2119804 opus 7 7661 2.5 4.5 3.5 1.6 7683 chr2L 2112121 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119804 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-555 41 chr2L 2260802 2260837 chr2L 2260888 2260921 8 86 3.0 3.0 3.0 2.0 119 chr2L 2260802 intergenic not near genes chr2L 2260862 intergenic not near genes chr2L 2260921 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-555 42 chr2L 2294042 2294072 chr2L 2299245 2299277 copia 8 5204 1.5 1.5 1.5 3.2 5235 chr2L 2294042 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299277 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-555 43 chr2L 2316250 2316276 chr2L 2316384 2316413 9 137 4.0 3.5 3.8 1.9 163 chr2L 2316250 intron,intron CG9967 -,eys + chr2L 2316332 intron,intron CG9967 -,eys + chr2L 2316413 intron,intron CG9967 -,eys + chr2L_9_2315001 chr2L_2315001 RAL-555 44 chr2L 2337351 2337363 chr2L 2337442 2337454 5 91 4.5 3.0 3.8 1.0 103 chr2L 2337351 intron,intron CG9967 -,eys + chr2L 2337402 intron,intron CG9967 -,eys + chr2L 2337454 intron,intron CG9967 -,eys + chr2L_5_2335001 chr2L_2335001 RAL-555 45 chr2L 2504228 2504234 chr2L 2504306 2504312 4 78 2.0 2.5 2.2 1.2 84 chr2L 2504228 intergenic not near genes chr2L 2504270 intergenic not near genes chr2L 2504312 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-555 46 chr2L 2516016 2516021 chr2L 2516386 2516391 4 369 2.0 1.5 1.8 1.4 375 chr2L 2516016 intergenic not near genes chr2L 2516204 intergenic not near genes chr2L 2516391 intergenic not near genes chr2L_4_2515001 chr2L_2515001 RAL-555 47 chr2L 2629686 2629703 chr2L 2630022 2630039 8 336 5.5 2.0 3.8 1.7 353 chr2L 2629686 intergenic not near genes chr2L 2629862 intergenic not near genes chr2L 2630039 intergenic not near genes chr2L_8_2625001 chr2L_2625001 RAL-555 48 chr2L 2661195 2661208 chr2L 2663033 2663046 I-element 4 1838 2.5 2.5 2.5 1.1 1851 chr2L 2661195 intergenic not near genes chr2L 2662120 intergenic not near genes chr2L 2663046 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-555 49 chr2L 2698878 2698889 chr2L 2698965 2698976 4 87 3.5 5.0 4.2 0.8 98 chr2L 2698878 intron CG31690 + chr2L 2698927 intron CG31690 + chr2L 2698976 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-555 50 chr2L 2713516 2713540 chr2L 2713614 2713639 13 99 6.5 3.5 5.0 2.2 123 chr2L 2713516 intron CG31690 + chr2L 2713578 intron CG31690 + chr2L 2713639 intron CG31690 + chr2L_13_2710001 chr2L_2710001 RAL-555 51 chr2L 2723112 2723146 chr2L 2723190 2723224 15 78 2.5 2.5 2.5 4.3 112 chr2L 2723112 intergenic not near genes chr2L 2723168 intergenic not near genes chr2L 2723224 intergenic not near genes chr2L_15_2720001 chr2L_2720001 RAL-555 52 chr2L 2772611 2772630 chr2L 2779195 2779214 297 4 6584 3.0 2.0 2.5 1.1 6603 chr2L 2772611 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779214 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-555 53 chr2L 2826541 2826575 chr2L 2826633 2826659 6 88 0.0 3.0 1.5 2.4 118 chr2L 2826541 intron Duox - chr2L 2826600 intron Duox - chr2L 2826659 intron Duox - chr2L_6_2825001 chr2L_2825001 RAL-555 54 chr2L 2889434 2889473 chr2L 2889517 2889556 16 83 4.0 1.5 2.8 4.2 122 chr2L 2889434 intron lilli + chr2L 2889495 intron lilli + chr2L 2889556 intron lilli + chr2L_16_2885001 chr2L_2885001 RAL-555 55 chr2L 2895688 2895716 chr2L 2895774 2895802 8 86 2.0 3.0 2.5 2.3 114 chr2L 2895688 intron lilli + chr2L 2895745 intron lilli + chr2L 2895802 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-555 56 chr2L 2932482 2932509 chr2L 2932778 2932805 8 296 3.5 4.5 4.0 1.6 323 chr2L 2932482 intron lilli + chr2L 2932644 intron lilli + chr2L 2932805 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-555 57 chr2L 3048529 3048537 chr2L 3049389 3049397 4 860 2.5 4.0 3.2 1.0 868 chr2L 3048529 intron v(2)k05816 + chr2L 3048963 intron v(2)k05816 + chr2L 3049397 exon v(2)k05816 + chr2L_4_3045001 chr2L_3045001 RAL-555 58 chr2L 3073030 3073063 chr2L 3078233 3078266 copia 8 5203 3.5 4.0 3.8 1.7 5236 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078266 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-555 59 chr2L 3108873 3108896 chr2L 3108950 3108973 9 77 2.5 0.0 1.2 4.1 100 chr2L 3108873 intron toc - chr2L 3108923 intron toc - chr2L 3108973 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-555 60 chr2L 3136893 3136924 chr2L 3136969 3137000 15 76 6.0 3.0 4.5 2.7 107 chr2L 3136893 intron toc - chr2L 3136946 intron toc - chr2L 3137000 intron toc - chr2L_15_3135001 chr2L_3135001 RAL-555 61 chr2L 3171181 3171216 chr2L 3171264 3171299 16 83 2.0 3.0 2.5 4.6 118 chr2L 3171181 intergenic CG44002 - chr2L 3171240 intergenic CG44002 - chr2L 3171299 intergenic CG44002 - chr2L_16_3170001 chr2L_3170001 RAL-555 62 chr2L 3191519 3191541 chr2L 3191600 3191622 5 81 1.5 2.0 1.8 1.8 103 chr2L 3191519 intron CG34393 - chr2L 3191570 intron CG34393 - chr2L 3191622 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-555 63 chr2L 3192208 3192242 chr2L 3192319 3192352 13 111 1.5 1.5 1.5 5.2 144 chr2L 3192208 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_13_3190001 chr2L_3190001 RAL-555 64 chr2L 3201000 3201033 chr2L 3201118 3201149 9 117 4.0 3.0 3.5 2.0 149 chr2L 3201000 intergenic not near genes chr2L 3201074 intergenic not near genes chr2L 3201149 intergenic not near genes chr2L_9_3200001 chr2L_3200001 RAL-555 65 chr2L 3202743 3202771 chr2L 3210172 3210200 mdg1 5 7429 1.5 2.0 1.8 1.8 7457 chr2L 3202743 intergenic not near genes chr2L 3206472 intergenic not near genes chr2L 3210200 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-555 66 chr2L 3228223 3228237 chr2L 3228301 3228315 9 78 1.5 2.0 1.8 3.2 92 chr2L 3228223 intergenic not near genes chr2L 3228269 intergenic not near genes chr2L 3228315 intergenic not near genes chr2L_9_3225001 chr2L_3225001 RAL-555 67 chr2L 3251498 3251526 chr2L 3259063 3259091 springer 12 7565 2.5 5.0 3.8 2.5 7593 chr2L 3251498 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_12_3255001 chr2L_3255001 RAL-555 68 chr2L 3286757 3286775 chr2L 3286832 3286853 7 78 2.5 3.0 2.8 1.8 96 chr2L 3286757 intergenic not near genes chr2L 3286805 intergenic not near genes chr2L 3286853 intergenic not near genes chr2L_7_3285001 chr2L_3285001 RAL-555 69 chr2L 3291238 3291270 chr2L 3291318 3291350 8 80 2.0 1.5 1.8 2.9 112 chr2L 3291238 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_8_3290001 chr2L_3290001 RAL-555 70 chr2L 3358726 3358752 chr2L 3358815 3358842 9 90 5.0 4.0 4.5 1.6 116 chr2L 3358726 3` UTR CG34394 - chr2L 3358784 3` UTR CG34394 - chr2L 3358842 3` UTR CG34394 - chr2L_9_3355001 chr2L_3355001 RAL-555 71 chr2L 3388600 3388628 chr2L 3388841 3388869 pogo 12 241 2.5 3.0 2.8 3.2 269 chr2L 3388600 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388869 intergenic CG42460 -,CR44791 + chr2L_12_3385001 chr2L_3385001 RAL-555 72 chr2L 3508346 3508373 chr2L 3508424 3508451 6 78 2.0 1.5 1.8 2.1 105 chr2L 3508346 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508451 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-555 73 chr2L 3561239 3561265 chr2L 3561322 3561345 14 82 2.0 3.0 2.5 4.0 106 chr2L 3561239 intergenic not near genes chr2L 3561292 intergenic not near genes chr2L 3561345 intergenic not near genes chr2L_14_3560001 chr2L_3560001 RAL-555 74 chr2L 3632354 3632385 chr2L 3632477 3632508 7 123 4.0 4.0 4.0 1.4 154 chr2L 3632354 intron for - chr2L 3632431 intron for - chr2L 3632508 intron for - chr2L_7_3630001 chr2L_3630001 RAL-555 75 chr2L 3649776 3649808 chr2L 3654993 3655025 copia 7 5217 1.5 3.0 2.2 2.2 5249 chr2L 3649776 intron for - chr2L 3652400 intron for - chr2L 3655025 intron for - chr2L_7_3650001 chr2L_3650001 RAL-555 76 chr2L 3673278 3673311 chr2L 3673378 3673409 5 99 0.0 1.0 0.5 3.3 131 chr2L 3673278 exon CG34340 + chr2L 3673344 intron CG34340 + chr2L 3673409 intron CG34340 + chr2L_5_3670001 chr2L_3670001 RAL-555 77 chr2L 3701190 3701224 chr2L 3701274 3701308 10 84 3.0 3.0 3.0 2.5 118 chr2L 3701190 intergenic Sfp24C1 +,CG42467 + chr2L 3701249 intergenic CG42467 +,Sfp24C1 + chr2L 3701308 exon CG42467 + chr2L_10_3700001 chr2L_3700001 RAL-555 78 chr2L 3702901 3702929 chr2L 3702987 3703015 10 86 2.0 2.0 2.0 3.3 114 chr2L 3702901 5` UTR CR44311 + chr2L 3702958 intergenic CR44311 + chr2L 3703015 intergenic CR44311 + chr2L_10_3700001 chr2L_3700001 RAL-555 79 chr2L 3819040 3819056 chr2L 3819122 3819138 6 82 5.0 0.0 2.5 1.7 98 chr2L 3819040 intergenic not near genes chr2L 3819089 intergenic not near genes chr2L 3819138 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-555 80 chr2L 3844346 3844354 chr2L 3844458 3844466 4 111 2.5 2.5 2.5 1.1 120 chr2L 3844346 intergenic not near genes chr2L 3844406 intergenic not near genes chr2L 3844466 intergenic not near genes chr2L_4_3840001 chr2L_3840001 RAL-555 81 chr2L 3891895 3891927 chr2L 3891979 3892012 14 85 0.5 2.0 1.2 6.4 117 chr2L 3891895 intron capu - chr2L 3891954 intron capu - chr2L 3892012 intron capu - chr2L_14_3890001 chr2L_3890001 RAL-555 82 chr2L 3943806 3943823 chr2L 3943897 3943914 6 91 0.5 4.5 2.5 1.7 108 chr2L 3943806 intron fred - chr2L 3943860 intron fred - chr2L 3943914 intron fred - chr2L_6_3940001 chr2L_3940001 RAL-555 83 chr2L 3968315 3968346 chr2L 3968415 3968445 7 99 2.5 1.5 2.0 2.3 130 chr2L 3968315 intron fred - chr2L 3968380 intron fred - chr2L 3968445 intron fred - chr2L_7_3965001 chr2L_3965001 RAL-555 84 chr2L 4066042 4066054 chr2L 4068867 4068879 Juan 5 2825 7.5 3.5 5.5 0.8 2837 chr2L 4066042 intron ed + chr2L 4067460 intron ed + chr2L 4068879 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-555 85 chr2L 4126209 4126232 chr2L 4126287 4126310 6 78 2.5 5.0 3.8 1.2 101 chr2L 4126209 intergenic not near genes chr2L 4126260 intergenic not near genes chr2L 4126310 intergenic not near genes chr2L_6_4125001 chr2L_4125001 RAL-555 86 chr2L 4150638 4150657 chr2L 4150718 4150736 7 79 0.5 6.5 3.5 1.6 98 chr2L 4150638 exon CG2955 + chr2L 4150687 exon CG2955 + chr2L 4150736 exon CG2955 + chr2L_7_4150001 chr2L_4150001 RAL-555 87 chr2L 4160502 4160531 chr2L 4160913 4160942 12 411 5.0 2.5 3.8 2.5 440 chr2L 4160502 intergenic not near genes chr2L 4160722 intergenic not near genes chr2L 4160942 intergenic not near genes chr2L_12_4160001 chr2L_4160001 RAL-555 88 chr2L 4181296 4181304 chr2L 4183928 4183936 Burdock 5 2632 0.5 6.0 3.2 1.2 2640 chr2L 4181296 intergenic not near genes chr2L 4182616 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-555 89 chr2L 4184495 4184509 chr2L 4184814 4184828 5 319 1.0 7.0 4.0 1.0 333 chr2L 4184495 intergenic not near genes chr2L 4184662 intergenic not near genes chr2L 4184828 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-555 90 chr2L 4250955 4250977 chr2L 4251031 4251053 6 76 2.0 2.0 2.0 2.0 98 chr2L 4250955 intergenic not near genes chr2L 4251004 intergenic not near genes chr2L 4251053 intergenic not near genes chr2L_6_4250001 chr2L_4250001 RAL-555 91 chr2L 4275081 4275106 chr2L 4275165 4275190 7 84 0.0 3.0 1.5 2.8 109 chr2L 4275081 intergenic not near genes chr2L 4275136 intergenic not near genes chr2L 4275190 intergenic not near genes chr2L_7_4275001 chr2L_4275001 RAL-555 92 chr2L 4305241 4305269 chr2L 4305319 4305347 4 78 2.5 2.5 2.5 1.1 106 chr2L 4305241 intron tutl + chr2L 4305294 intron tutl + chr2L 4305347 intron tutl + chr2L_4_4305001 chr2L_4305001 RAL-555 93 chr2L 4437212 4437225 chr2L 4437292 4437305 8 80 7.0 1.0 4.0 1.6 93 chr2L 4437212 intron CG15431 - chr2L 4437258 intron CG15431 - chr2L 4437305 intron CG15431 - chr2L_8_4435001 chr2L_4435001 RAL-555 94 chr2L 4601704 4601736 chr2L 4609145 4609177 mdg1 10 7441 2.5 3.0 2.8 2.6 7473 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-555 95 chr2L 4661846 4661858 chr2L 4669426 4669438 opus 4 7580 2.0 6.0 4.0 0.8 7592 chr2L 4661846 intergenic not near genes chr2L 4665642 intergenic not near genes chr2L 4669438 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-555 96 chr2L 4677601 4677617 chr2L 4677716 4677733 7 115 3.5 3.5 3.5 1.6 132 chr2L 4677601 intergenic not near genes chr2L 4677667 intergenic not near genes chr2L 4677733 intergenic not near genes chr2L_7_4675001 chr2L_4675001 RAL-555 97 chr2L 4748699 4748723 chr2L 4748778 4748802 6 79 2.0 4.0 3.0 1.5 103 chr2L 4748699 intron CG15630 - chr2L 4748750 intron CG15630 - chr2L 4748802 intron CG15630 - chr2L_6_4745001 chr2L_4745001 RAL-555 98 chr2L 4819500 4819519 chr2L 4819623 4819642 7 123 1.5 3.5 2.5 2.0 142 chr2L 4819500 intergenic not near genes chr2L 4819571 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-555 99 chr2L 4858464 4858476 chr2L 4858552 4858564 4 88 0.0 2.5 1.2 1.8 100 chr2L 4858464 intron pog + chr2L 4858514 intron pog + chr2L 4858564 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-555 100 chr2L 4918166 4918198 chr2L 4923239 4923271 jockey 7 5073 4.0 6.5 5.2 1.1 5105 chr2L 4918166 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-555 101 chr2L 4953518 4953544 chr2L 4953759 4953785 pogo 5 241 3.5 1.5 2.5 1.4 267 chr2L 4953518 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953785 intergenic Jon25Bi - chr2L_5_4950001 chr2L_4950001 RAL-555 102 chr2L 4993220 4993239 chr2L 4993304 4993323 5 84 5.0 3.5 4.2 1.0 103 chr2L 4993220 intergenic Rtnl1 - chr2L 4993272 intergenic Rtnl1 - chr2L 4993323 intergenic Rtnl1 - chr2L_5_4990001 chr2L_4990001 RAL-555 103 chr2L 4996091 4996108 chr2L 4996168 4996185 4 77 4.5 3.5 4.0 0.8 94 chr2L 4996091 intron Rtnl1 - chr2L 4996138 intron Rtnl1 - chr2L 4996185 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-555 104 chr2L 5027961 5027993 chr2L 5028045 5028077 20 84 1.0 4.5 2.8 5.3 116 chr2L 5027961 intron vkg - chr2L 5028019 intron vkg - chr2L 5028077 intron vkg - chr2L_20_5025001 chr2L_5025001 RAL-555 105 chr2L 5092418 5092438 chr2L 5092505 5092525 5 87 3.0 2.0 2.5 1.4 107 chr2L 5092418 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092525 intron pgant5 - chr2L_5_5090001 chr2L_5090001 RAL-555 106 chr2L 5120974 5120991 chr2L 5121068 5121085 8 94 6.0 6.0 6.0 1.1 111 chr2L 5120974 intron Msp300 + chr2L 5121030 intron Msp300 + chr2L 5121085 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-555 107 chr2L 5242935 5242936 chr2L 16217660 16217660 7 10974724 14.0 20.0 17.0 0.4 10974725 chr2L 5242935 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_7_10730001 chr2L_10730001 RAL-555 108 chr2L 5263721 5263738 chr2L 5263803 5263820 5 82 1.5 4.0 2.8 1.3 99 chr2L 5263721 intron tkv - chr2L 5263770 intron tkv - chr2L 5263820 intron tkv - chr2L_5_5260001 chr2L_5260001 RAL-555 109 chr2L 5299198 5299231 chr2L 5299282 5299315 10 84 3.5 3.5 3.5 2.2 117 chr2L 5299198 intron vri + chr2L 5299256 intron vri + chr2L 5299315 intron vri + chr2L_10_5295001 chr2L_5295001 RAL-555 110 chr2L 5342768 5342783 chr2L 5345148 5345163 Doc 6 2380 6.0 6.0 6.0 0.9 2395 chr2L 5342768 intergenic not near genes chr2L 5343966 intergenic not near genes chr2L 5345163 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-555 111 chr2L 5399875 5399914 chr2L 5399994 5400033 10 119 3.0 2.5 2.8 2.6 158 chr2L 5399875 intergenic not near genes chr2L 5399954 intergenic not near genes chr2L 5400033 intergenic not near genes chr2L_10_5395001 chr2L_5395001 RAL-555 112 chr2L 5448013 5448025 chr2L 5448094 5448109 4 83 0.0 3.0 1.5 1.6 96 chr2L 5448013 intergenic not near genes chr2L 5448061 intergenic not near genes chr2L 5448109 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-555 113 chr2L 5500061 5500073 chr2L 5500147 5500159 6 86 5.0 6.0 5.5 0.9 98 chr2L 5500061 intergenic not near genes chr2L 5500110 intergenic not near genes chr2L 5500159 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-555 114 chr2L 5827713 5827736 chr2L 5836721 5836744 roo 14 9008 2.0 3.5 2.8 3.7 9031 chr2L 5827713 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_14_5830001 chr2L_5830001 RAL-555 115 chr2L 5897595 5897628 chr2L 5897678 5897711 19 82 6.5 5.0 5.8 2.8 116 chr2L 5897595 intergenic not near genes chr2L 5897653 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_19_5895001 chr2L_5895001 RAL-555 116 chr2L 5931318 5931332 chr2L 5931430 5931444 5 112 1.5 6.0 3.8 1.0 126 chr2L 5931318 intron dsf + chr2L 5931381 intron dsf + chr2L 5931444 intron dsf + chr2L_5_5930001 chr2L_5930001 RAL-555 117 chr2L 5962281 5962302 chr2L 5962357 5962378 6 76 2.5 3.5 3.0 1.5 97 chr2L 5962281 intergenic not near genes chr2L 5962330 intergenic not near genes chr2L 5962378 intergenic not near genes chr2L_6_5960001 chr2L_5960001 RAL-555 118 chr2L 6002442 6002470 chr2L 6002528 6002556 6 86 0.5 2.5 1.5 2.4 114 chr2L 6002442 3` UTR Tsp26A + chr2L 6002499 3` UTR Tsp26A + chr2L 6002556 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-555 119 chr2L 6050441 6050466 chr2L 6050545 6050570 9 104 2.0 3.0 2.5 2.6 129 chr2L 6050441 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050570 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-555 120 chr2L 6130770 6130789 chr2L 6130855 6130874 5 85 1.0 0.0 0.5 3.3 104 chr2L 6130770 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130822 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130874 intergenic CG9222 +,CG42730 -,tectonic - chr2L_5_6130001 chr2L_6130001 RAL-555 121 chr2L 6138735 6138748 chr2L 6138851 6138864 7 116 2.5 0.5 1.5 2.8 129 chr2L 6138735 intergenic CR44824 - chr2L 6138800 intergenic CR44824 - chr2L 6138864 intergenic CR44824 - chr2L_7_6135001 chr2L_6135001 RAL-555 122 chr2L 6185440 6185471 chr2L 6185518 6185549 15 78 5.5 4.5 5.0 2.5 109 chr2L 6185440 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_15_6185001 chr2L_6185001 RAL-555 123 chr2L 6251149 6251182 chr2L 6251518 6251551 18 369 3.0 3.0 3.0 4.5 402 chr2L 6251149 intergenic not near genes chr2L 6251350 intergenic not near genes chr2L 6251551 intergenic not near genes chr2L_18_6250001 chr2L_6250001 RAL-555 124 chr2L 6279642 6279652 chr2L 6279721 6279731 INE-1 4 79 7.0 1.0 4.0 0.8 89 chr2L 6279642 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279731 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-555 125 chr2L 6283945 6283980 chr2L 6284056 6284091 5 111 0.5 0.0 0.2 4.2 146 chr2L 6283945 intron Ddr + chr2L 6284018 intron Ddr + chr2L 6284091 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-555 126 chr2L 6342392 6342422 chr2L 6342474 6342504 8 82 0.0 1.0 0.5 5.3 112 chr2L 6342392 intron Cpr + chr2L 6342448 intron Cpr + chr2L 6342504 intron Cpr + chr2L_8_6340001 chr2L_6340001 RAL-555 127 chr2L 6426865 6426889 chr2L 6445125 6445149 roo 9 18260 3.5 8.0 5.8 1.3 18284 chr2L 6426865 3` UTR CG9527 - chr2L 6436007 intron CG9527 - chr2L 6445149 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-555 128 chr2L 6470734 6470750 chr2L 6470840 6470856 5 106 1.5 1.5 1.5 2.0 122 chr2L 6470734 intron mmy - chr2L 6470795 intron mmy - chr2L 6470856 intron mmy - chr2L_5_6470001 chr2L_6470001 RAL-555 129 chr2L 6514131 6514159 chr2L 6514209 6514237 5 76 1.5 3.0 2.2 1.6 106 chr2L 6514131 intron CG31637 + chr2L 6514184 intron CG31637 + chr2L 6514237 intron CG31637 + chr2L_5_6510001 chr2L_6510001 RAL-555 130 chr2L 6544370 6544395 chr2L 6544462 6544487 8 92 1.5 3.5 2.5 2.3 117 chr2L 6544370 intron eya - chr2L 6544428 intron eya - chr2L 6544487 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-555 131 chr2L 6691637 6691645 chr2L 6691714 6691722 4 76 2.5 9.5 6.0 0.6 85 chr2L 6691637 intron Tsp - chr2L 6691680 intron Tsp - chr2L 6691722 intron Tsp - chr2L_4_6690001 chr2L_6690001 RAL-555 132 chr2L 6740746 6740762 chr2L 6740833 6740849 6 87 0.0 5.0 2.5 1.7 103 chr2L 6740746 intergenic not near genes chr2L 6740798 intergenic not near genes chr2L 6740849 intergenic not near genes chr2L_6_6740001 chr2L_6740001 RAL-555 133 chr2L 6836506 6836533 chr2L 6836588 6836615 6 82 2.5 1.5 2.0 2.0 109 chr2L 6836506 intron sens-2 + chr2L 6836560 intron sens-2 + chr2L 6836615 intron sens-2 + chr2L_6_6835001 chr2L_6835001 RAL-555 134 chr2L 6850395 6850414 chr2L 6850478 6850497 6 83 1.5 2.0 1.8 2.1 102 chr2L 6850395 intergenic not near genes chr2L 6850446 intergenic not near genes chr2L 6850497 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-555 135 chr2L 6876781 6876807 chr2L 6882966 6882998 diver 4 6189 1.0 2.0 1.5 1.6 6217 chr2L 6876781 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6882998 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-555 136 chr2L 6891444 6891472 chr2L 6891542 6891570 9 98 3.0 3.0 3.0 2.2 126 chr2L 6891444 intron Nlg2 + chr2L 6891507 intron Nlg2 + chr2L 6891570 intron Nlg2 + chr2L_9_6890001 chr2L_6890001 RAL-555 137 chr2L 6991390 6991426 chr2L 6998554 6998590 HMS-Beagle 13 7164 1.5 1.5 1.5 5.2 7200 chr2L 6991390 intron uif - chr2L 6994990 intron uif - chr2L 6998590 intron uif - chr2L_13_6990001 chr2L_6990001 RAL-555 138 chr2L 7000375 7000396 chr2L 7000453 7000474 6 78 2.0 2.5 2.2 1.9 99 chr2L 7000375 intron uif - chr2L 7000424 intron uif - chr2L 7000474 intron uif - chr2L_6_7000001 chr2L_7000001 RAL-555 139 chr2L 7007412 7007427 chr2L 7007515 7007530 5 103 2.5 0.5 1.5 2.0 118 chr2L 7007412 intron uif - chr2L 7007471 intron uif - chr2L 7007530 intron uif - chr2L_5_7005001 chr2L_7005001 RAL-555 140 chr2L 7126859 7126878 chr2L 7126938 7126957 7 79 1.0 0.0 0.5 4.7 98 chr2L 7126859 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126957 intron Pvf3 - chr2L_7_7125001 chr2L_7125001 RAL-555 141 chr2L 7249621 7249639 chr2L 7249704 7249722 6 82 4.5 3.5 4.0 1.2 101 chr2L 7249621 intergenic Ndae1 - chr2L 7249672 intergenic Ndae1 - chr2L 7249722 intergenic Ndae1 - chr2L_6_7245001 chr2L_7245001 RAL-555 142 chr2L 7325916 7325945 chr2L 7326001 7326030 4 85 2.0 1.5 1.8 1.4 114 chr2L 7325916 intergenic not near genes chr2L 7325973 intergenic not near genes chr2L 7326030 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-555 143 chr2L 7343327 7343358 chr2L 7350443 7350473 roo 8 7115 1.0 6.0 3.5 1.8 7146 chr2L 7343327 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-555 144 chr2L 7555215 7555231 chr2L 7555292 7555308 6 77 0.0 2.5 1.2 2.7 93 chr2L 7555215 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-555 145 chr2L 7587416 7587449 chr2L 7587498 7587531 8 82 3.5 1.5 2.5 2.3 115 chr2L 7587416 intergenic not near genes chr2L 7587474 intergenic not near genes chr2L 7587531 intergenic not near genes chr2L_8_7585001 chr2L_7585001 RAL-555 146 chr2L 7629159 7629172 chr2L 7629246 7629258 4 87 5.0 3.0 4.0 0.8 99 chr2L 7629159 intergenic not near genes chr2L 7629208 intergenic not near genes chr2L 7629258 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-555 147 chr2L 7650029 7650035 chr2L 7650105 7650111 5 76 3.5 0.0 1.8 1.8 82 chr2L 7650029 intron Slob - chr2L 7650070 intron Slob - chr2L 7650111 intron Slob - chr2L_5_7650001 chr2L_7650001 RAL-555 148 chr2L 7704708 7704727 chr2L 7704846 7704865 4 138 2.5 3.0 2.8 1.1 157 chr2L 7704708 intron Tep3 + chr2L 7704786 intron Tep3 + chr2L 7704865 intron Tep3 + chr2L_4_7700001 chr2L_7700001 RAL-555 149 chr2L 7748697 7748710 chr2L 7748794 7748807 8 97 0.5 2.5 1.5 3.2 110 chr2L 7748697 intergenic not near genes chr2L 7748752 intergenic not near genes chr2L 7748807 intergenic not near genes chr2L_8_7745001 chr2L_7745001 RAL-555 150 chr2L 7861310 7861340 chr2L 7861414 7861444 10 104 3.5 2.5 3.0 2.5 134 chr2L 7861310 intergenic TwdlE - chr2L 7861377 intergenic not near genes chr2L 7861444 intergenic not near genes chr2L_10_7860001 chr2L_7860001 RAL-555 151 chr2L 7867564 7867603 chr2L 7867657 7867696 16 94 3.0 1.5 2.2 5.0 132 chr2L 7867564 intron Proc - chr2L 7867630 intron Proc - chr2L 7867696 intron Proc - chr2L_16_7865001 chr2L_7865001 RAL-555 152 chr2L 7922743 7922775 chr2L 7922824 7922856 11 81 2.5 2.0 2.2 3.4 113 chr2L 7922743 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_11_7920001 chr2L_7920001 RAL-555 153 chr2L 7959045 7959073 chr2L 7960456 7960484 pogo 9 1411 0.5 3.5 2.0 3.0 1439 chr2L 7959045 intron Snoo - chr2L 7959764 intron Snoo - chr2L 7960484 intron Snoo - chr2L_9_7955001 chr2L_7955001 RAL-555 154 chr2L 7965874 7965884 chr2L 7965957 7965967 4 83 6.5 0.0 3.2 1.0 93 chr2L 7965874 intron Snoo - chr2L 7965920 intron Snoo - chr2L 7965967 intron Snoo - chr2L_4_7965001 chr2L_7965001 RAL-555 155 chr2L 8013615 8013627 chr2L 8018820 8018832 copia 4 5205 7.5 0.0 3.8 0.8 5217 chr2L 8013615 intron Tg + chr2L 8016224 intron Tg + chr2L 8018832 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-555 156 chr2L 8018823 8018833 chr2L 8023607 8023617 Doc 5 4784 0.0 6.5 3.2 1.2 4794 chr2L 8018823 intron Tg + chr2L 8021220 intron Tg + chr2L 8023617 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-555 157 chr2L 8044103 8044122 chr2L 8044182 8044201 6 78 5.0 3.5 4.2 1.2 98 chr2L 8044103 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044201 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-555 158 chr2L 8184918 8184955 chr2L 8185009 8185046 21 91 2.0 4.0 3.0 5.2 128 chr2L 8184918 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185046 intron Piezo + chr2L_21_8180001 chr2L_8180001 RAL-555 159 chr2L 8244733 8244745 chr2L 8244855 8244865 7 122 0.0 2.0 1.0 3.5 132 chr2L 8244733 intron CG8086 - chr2L 8244799 intron CG8086 - chr2L 8244865 intron CG8086 - chr2L_7_8240001 chr2L_8240001 RAL-555 160 chr2L 8258167 8258194 chr2L 8258264 8258291 13 97 4.0 2.5 3.2 3.1 124 chr2L 8258167 intergenic Btk29A -,mir-2b-1 - chr2L 8258229 intergenic Btk29A -,mir-2b-1 - chr2L 8258291 intergenic Btk29A -,mir-2b-1 - chr2L_13_8255001 chr2L_8255001 RAL-555 161 chr2L 8291496 8291527 chr2L 8291635 8291666 6 139 2.0 3.5 2.8 1.6 170 chr2L 8291496 intron Btk29A - chr2L 8291581 intron Btk29A - chr2L 8291666 intron Btk29A - chr2L_6_8290001 chr2L_8290001 RAL-555 162 chr2L 8323703 8323732 chr2L 8323803 8323832 8 100 1.0 1.0 1.0 4.0 129 chr2L 8323703 intron CG7781 - chr2L 8323768 intron CG7781 - chr2L 8323832 intron CG7781 - chr2L_8_8320001 chr2L_8320001 RAL-555 163 chr2L 8452420 8452451 chr2L 8461591 8461622 roo 13 9171 3.5 3.5 3.5 2.9 9202 chr2L 8452420 intron fu12 - chr2L 8457021 intron fu12 - chr2L 8461622 intron fu12 - chr2L_13_8455001 chr2L_8455001 RAL-555 164 chr2L 8498205 8498227 chr2L 8498286 8498308 6 81 4.5 1.5 3.0 1.5 103 chr2L 8498205 intron Dh31 - chr2L 8498256 intron Dh31 - chr2L 8498308 intron Dh31 - chr2L_6_8495001 chr2L_8495001 RAL-555 165 chr2L 8612863 8612870 chr2L 8612940 8612947 4 77 3.0 6.0 4.5 0.7 84 chr2L 8612863 intron Sema-1a + chr2L 8612905 intron Sema-1a + chr2L 8612947 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-555 166 chr2L 8723113 8723147 chr2L 8731490 8731524 Tirant 10 8376 1.0 2.5 1.8 3.6 8411 chr2L 8723113 intron raw - chr2L 8727318 intron raw - chr2L 8731524 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-555 167 chr2L 8759988 8759997 chr2L 8760129 8760138 4 141 0.5 0.0 0.2 3.3 150 chr2L 8759988 intergenic not near genes chr2L 8760063 intergenic not near genes chr2L 8760138 intergenic not near genes chr2L_4_8760001 chr2L_8760001 RAL-555 168 chr2L 8799802 8799830 chr2L 8799918 8799945 7 115 1.5 2.0 1.8 2.5 143 chr2L 8799802 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799945 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-555 169 chr2L 8815393 8815425 chr2L 8815759 8815791 7 365 3.0 3.5 3.2 1.7 398 chr2L 8815393 intergenic not near genes chr2L 8815592 intergenic not near genes chr2L 8815791 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-555 170 chr2L 8869472 8869490 chr2L 8869557 8869575 8 85 2.5 1.5 2.0 2.7 103 chr2L 8869472 intergenic not near genes chr2L 8869524 intergenic not near genes chr2L 8869575 intergenic not near genes chr2L_8_8865001 chr2L_8865001 RAL-555 171 chr2L 8875436 8875469 chr2L 8875514 8875546 5 78 2.0 0.0 1.0 2.5 110 chr2L 8875436 intergenic not near genes chr2L 8875491 intergenic not near genes chr2L 8875546 intergenic not near genes chr2L_5_8875001 chr2L_8875001 RAL-555 172 chr2L 8902449 8902479 chr2L 8902596 8902626 8 147 3.0 2.5 2.8 2.1 177 chr2L 8902449 intron CG34398 + chr2L 8902538 intron CG34398 + chr2L 8902626 intron CG34398 + chr2L_8_8900001 chr2L_8900001 RAL-555 173 chr2L 8910724 8910744 chr2L 8910815 8910835 5 91 2.0 3.0 2.5 1.4 111 chr2L 8910724 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910835 intron CG34398 + chr2L_5_8910001 chr2L_8910001 RAL-555 174 chr2L 8939666 8939701 chr2L 8939746 8939781 9 80 1.0 2.5 1.8 3.2 115 chr2L 8939666 3` UTR Tsp29Fb + chr2L 8939724 3` UTR Tsp29Fb + chr2L 8939781 intergenic CG9510 -,Tsp29Fb + chr2L_9_8935001 chr2L_8935001 RAL-555 175 chr2L 9000281 9000306 chr2L 9007791 9007816 roo 9 7510 4.5 1.5 3.0 2.2 7535 chr2L 9000281 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-555 176 chr2L 9025670 9025687 chr2L 9025866 9025883 7 196 1.5 1.0 1.2 3.2 213 chr2L 9025670 intron,3` UTR CG9582 -,CR44352 - chr2L 9025776 intron,3` UTR CG9582 -,CR44352 - chr2L 9025883 intron,3` UTR CG9582 -,CR44352 - chr2L_7_9025001 chr2L_9025001 RAL-555 177 chr2L 9084336 9084339 chr2L 16217660 16217661 19 7133321 13.5 20.0 16.8 1.1 7133325 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_19_12650001 chr2L_12650001 RAL-555 178 chr2L 9084340 9084340 chr2L 16217660 16217660 4 7133320 14.0 20.0 17.0 0.2 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-555 179 chr2L 9173072 9173093 chr2L 9173149 9173170 7 77 1.5 1.0 1.2 3.2 98 chr2L 9173072 intron tai + chr2L 9173121 intron tai + chr2L 9173170 intron tai + chr2L_7_9170001 chr2L_9170001 RAL-555 180 chr2L 9280007 9280023 chr2L 9280101 9280117 6 94 0.0 7.0 3.5 1.3 110 chr2L 9280007 intron Ggamma30A + chr2L 9280062 intron Ggamma30A + chr2L 9280117 intron Ggamma30A + chr2L_6_9280001 chr2L_9280001 RAL-555 181 chr2L 9289910 9289916 chr2L 9290083 9290093 5 174 12.5 12.0 12.2 0.4 183 chr2L 9289910 intron Ggamma30A + chr2L 9290002 intron Ggamma30A + chr2L 9290093 intron Ggamma30A + chr2L_5_9290001 chr2L_9290001 RAL-555 182 chr2L 9354664 9354695 chr2L 9354796 9354827 11 132 1.5 3.0 2.2 3.4 163 chr2L 9354664 intergenic not near genes chr2L 9354746 intergenic not near genes chr2L 9354827 intergenic not near genes chr2L_11_9350001 chr2L_9350001 RAL-555 183 chr2L 9385122 9385151 chr2L 9385212 9385240 13 90 4.5 4.0 4.2 2.5 118 chr2L 9385122 intron Shawl - chr2L 9385181 intron Shawl - chr2L 9385240 intron Shawl - chr2L_13_9385001 chr2L_9385001 RAL-555 184 chr2L 9387258 9387273 chr2L 9387356 9387371 7 98 2.5 2.0 2.2 2.2 113 chr2L 9387258 intron Shawl - chr2L 9387314 intron Shawl - chr2L 9387371 intron Shawl - chr2L_7_9385001 chr2L_9385001 RAL-555 185 chr2L 9393496 9393527 chr2L 9396463 9396494 jockey 7 2967 4.5 2.5 3.5 1.6 2998 chr2L 9393496 intron Shawl - chr2L 9394995 intron Shawl - chr2L 9396494 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-555 186 chr2L 9423187 9423202 chr2L 9423265 9423280 4 78 5.5 2.0 3.8 0.8 93 chr2L 9423187 intron Mco1 + chr2L 9423234 intron Mco1 + chr2L 9423280 intron Mco1 + chr2L_4_9420001 chr2L_9420001 RAL-555 187 chr2L 9454977 9455004 chr2L 9455079 9455106 8 102 3.0 1.5 2.2 2.5 129 chr2L 9454977 intron numb + chr2L 9455042 intron numb + chr2L 9455106 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-555 188 chr2L 9456931 9456950 chr2L 9457012 9457031 6 81 1.0 2.5 1.8 2.1 100 chr2L 9456931 intron numb + chr2L 9456981 intron numb + chr2L 9457031 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-555 189 chr2L 9474786 9474810 chr2L 9474880 9474904 5 93 1.5 2.0 1.8 1.8 118 chr2L 9474786 intergenic not near genes chr2L 9474845 intergenic not near genes chr2L 9474904 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-555 190 chr2L 9498354 9498383 chr2L 9498434 9498463 8 80 4.0 7.5 5.8 1.2 109 chr2L 9498354 intron CG33298 + chr2L 9498408 intron CG33298 + chr2L 9498463 intron CG33298 + chr2L_8_9495001 chr2L_9495001 RAL-555 191 chr2L 9543767 9543788 chr2L 9543844 9543864 5 77 2.5 0.5 1.5 2.0 97 chr2L 9543767 intergenic Cpr30B +,CG13113 + chr2L 9543816 intergenic Cpr30B +,CG13113 + chr2L 9543864 intergenic Cpr30B +,CG13113 + chr2L_5_9540001 chr2L_9540001 RAL-555 192 chr2L 9618898 9618914 chr2L 9618975 9618991 7 77 0.0 2.5 1.2 3.2 93 chr2L 9618898 intron GlcAT-S + chr2L 9618944 intron GlcAT-S + chr2L 9618991 intron GlcAT-S + chr2L_7_9615001 chr2L_9615001 RAL-555 193 chr2L 9730978 9731006 chr2L 9731061 9731089 10 83 3.0 3.0 3.0 2.5 111 chr2L 9730978 intron Nckx30C - chr2L 9731034 intron Nckx30C - chr2L 9731089 intron Nckx30C - chr2L_10_9730001 chr2L_9730001 RAL-555 194 chr2L 9773119 9773146 chr2L 9773236 9773263 6 117 4.0 2.5 3.2 1.4 144 chr2L 9773119 exon ppk11 - chr2L 9773191 exon ppk11 - chr2L 9773263 exon ppk11 - chr2L_6_9770001 chr2L_9770001 RAL-555 195 chr2L 9810319 9810359 chr2L 9810544 9810574 8 219 0.0 2.0 1.0 4.0 255 chr2L 9810319 intron nAChRalpha6 - chr2L 9810446 intron nAChRalpha6 - chr2L 9810574 intron nAChRalpha6 - chr2L_8_9810001 chr2L_9810001 RAL-555 196 chr2L 9839380 9839395 chr2L 9839469 9839487 7 92 4.5 2.0 3.2 1.7 107 chr2L 9839380 intron nAChRalpha6 - chr2L 9839434 intron nAChRalpha6 - chr2L 9839487 intron nAChRalpha6 - chr2L_7_9835001 chr2L_9835001 RAL-555 197 chr2L 9846850 9846880 chr2L 9846926 9846956 9 76 2.0 2.0 2.0 3.0 106 chr2L 9846850 intron nAChRalpha6 - chr2L 9846903 intron nAChRalpha6 - chr2L 9846956 intron nAChRalpha6 - chr2L_9_9845001 chr2L_9845001 RAL-555 198 chr2L 9893658 9893682 chr2L 9893736 9893760 7 78 2.0 1.5 1.8 2.5 102 chr2L 9893658 intergenic Uhg2 -,mtDNA-helicase -,snoRNA:U14:30Eb - chr2L 9893709 intergenic Uhg2 -,snoRNA:U14:30Eb -,mtDNA-helicase -,snoRNA:U14:30Ea - chr2L 9893760 intergenic Uhg2 -,snoRNA:U14:30Eb -,mtDNA-helicase -,snoRNA:U14:30Ea - chr2L_7_9890001 chr2L_9890001 RAL-555 199 chr2L 9973728 9973756 chr2L 9980847 9980875 HMS-Beagle 15 7119 6.0 8.0 7.0 1.9 7147 chr2L 9973728 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_15_9975001 chr2L_9975001 RAL-555 200 chr2L 9991180 9991206 chr2L 9991284 9991310 12 104 4.5 2.5 3.5 2.7 130 chr2L 9991180 intron bib + chr2L 9991245 intron bib + chr2L 9991310 intron bib + chr2L_12_9990001 chr2L_9990001 RAL-555 201 chr2L 10051731 10051753 chr2L 10051811 10051837 10 84 2.0 5.0 3.5 2.2 106 chr2L 10051731 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_10_10050001 chr2L_10050001 RAL-555 202 chr2L 10095635 10095659 chr2L 10095715 10095739 12 80 3.0 4.5 3.8 2.5 104 chr2L 10095635 intron CG44153 - chr2L 10095687 intron CG44153 - chr2L 10095739 intron CG44153 - chr2L_12_10095001 chr2L_10095001 RAL-555 203 chr2L 10105284 10105313 chr2L 10105358 10105389 12 76 1.0 4.0 2.5 3.4 105 chr2L 10105284 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105389 intron,intron CG44153 -,CG34109 + chr2L_12_10105001 chr2L_10105001 RAL-555 204 chr2L 10153210 10153231 chr2L 10153289 10153310 7 79 2.5 4.0 3.2 1.7 100 chr2L 10153210 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153310 intron,intron CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-555 205 chr2L 10156326 10156351 chr2L 10163793 10163821 blood 7 7469 2.0 1.5 1.8 2.5 7495 chr2L 10156326 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163821 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-555 206 chr2L 10177376 10177385 chr2L 10177452 10177461 4 76 1.5 0.0 0.8 2.2 85 chr2L 10177376 intron CG44153 - chr2L 10177418 intron CG44153 - chr2L 10177461 intron CG44153 - chr2L_4_10175001 chr2L_10175001 RAL-555 207 chr2L 10204504 10204532 chr2L 10204587 10204615 13 83 1.5 2.0 1.8 4.6 111 chr2L 10204504 intergenic CG34159 -,CG5734 - chr2L 10204560 intergenic CG5734 -,CG34159 - chr2L 10204615 intergenic CG5734 -,CG34159 - chr2L_13_10200001 chr2L_10200001 RAL-555 208 chr2L 10348384 10348409 chr2L 10348467 10348492 9 83 4.0 1.5 2.8 2.4 108 chr2L 10348384 intron CG34367 - chr2L 10348438 intron CG34367 - chr2L 10348492 intron CG34367 - chr2L_9_10345001 chr2L_10345001 RAL-555 209 chr2L 10447077 10447093 chr2L 10447187 10447203 6 110 0.0 3.0 1.5 2.4 126 chr2L 10447077 intron loh + chr2L 10447140 intron loh + chr2L 10447203 intron loh + chr2L_6_10445001 chr2L_10445001 RAL-555 210 chr2L 10474393 10474403 chr2L 10474473 10474484 4 81 2.5 2.5 2.5 1.1 91 chr2L 10474393 intergenic RluA-1 - chr2L 10474438 intergenic RluA-1 - chr2L 10474484 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 RAL-555 211 chr2L 10479397 10479424 chr2L 10479478 10479505 11 80 2.5 3.0 2.8 2.9 108 chr2L 10479397 intron RluA-2 + chr2L 10479451 intron RluA-2 + chr2L 10479505 intron RluA-2 + chr2L_11_10475001 chr2L_10475001 RAL-555 212 chr2L 10495304 10495321 chr2L 10495381 10495396 6 77 8.5 3.5 6.0 0.9 92 chr2L 10495304 intron Myo31DF - chr2L 10495350 intron Myo31DF - chr2L 10495396 intron Myo31DF - chr2L_6_10495001 chr2L_10495001 RAL-555 213 chr2L 10580801 10580819 chr2L 10580881 10580900 8 81 2.5 5.0 3.8 1.7 99 chr2L 10580801 intron Trim9 + chr2L 10580850 intron Trim9 + chr2L 10580900 intron Trim9 + chr2L_8_10580001 chr2L_10580001 RAL-555 214 chr2L 10631249 10631278 chr2L 10631340 10631369 8 91 3.0 1.0 2.0 2.7 120 chr2L 10631249 intron CG7329 - chr2L 10631309 intron CG7329 - chr2L 10631369 intron CG7329 - chr2L_8_10630001 chr2L_10630001 RAL-555 215 chr2L 10647598 10647607 chr2L 10647723 10647732 4 125 12.5 21.5 17.0 0.2 134 chr2L 10647598 exon CG17097 + chr2L 10647665 exon CG17097 + chr2L 10647732 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-555 216 chr2L 10701812 10701846 chr2L 10701898 10701932 7 86 0.0 1.5 0.8 3.9 120 chr2L 10701812 intergenic Lip2 -,Lip1 - chr2L 10701872 intergenic Lip2 -,Lip1 - chr2L 10701932 intergenic Lip2 -,Lip1 - chr2L_7_10700001 chr2L_10700001 RAL-555 217 chr2L 10704917 10704927 chr2L 10705012 10705022 6 95 6.5 2.0 4.2 1.2 105 chr2L 10704917 intron,3` UTR Lip2 -,CG6415 + chr2L 10704970 intron Lip2 - chr2L 10705022 intron Lip2 - chr2L_6_10700001 chr2L_10700001 RAL-555 218 chr2L 10705457 10705480 chr2L 10705539 10705563 11 82 0.5 2.0 1.2 5.0 106 chr2L 10705457 exon Lip2 - chr2L 10705510 intron Lip2 - chr2L 10705563 intron Lip2 - chr2L_11_10705001 chr2L_10705001 RAL-555 219 chr2L 10721216 10721240 chr2L 10721304 10721331 6 92 2.5 3.5 3.0 1.5 115 chr2L 10721216 intergenic not near genes chr2L 10721274 intergenic not near genes chr2L 10721331 intergenic not near genes chr2L_6_10720001 chr2L_10720001 RAL-555 220 chr2L 10727287 10727306 chr2L 10727397 10727417 7 111 1.5 0.0 0.8 3.9 130 chr2L 10727287 intron CG6431 + chr2L 10727352 intron CG6431 + chr2L 10727417 intron CG6431 + chr2L_7_10725001 chr2L_10725001 RAL-555 221 chr2L 10862842 10862873 chr2L 10864453 10864487 Rt1c 19 1614 3.0 4.0 3.5 4.2 1645 chr2L 10862842 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864487 3` UTR CR43807 - chr2L_19_10860001 chr2L_10860001 RAL-555 222 chr2L 10891485 10891501 chr2L 10891598 10891615 9 114 5.5 2.0 3.8 1.9 130 chr2L 10891485 intergenic not near genes chr2L 10891550 intergenic not near genes chr2L 10891615 intergenic not near genes chr2L_9_10890001 chr2L_10890001 RAL-555 223 chr2L 10930774 10930789 chr2L 10930853 10930869 6 80 1.0 3.0 2.0 2.0 95 chr2L 10930774 intron dpr2 - chr2L 10930822 intron dpr2 - chr2L 10930869 intron dpr2 - chr2L_6_10930001 chr2L_10930001 RAL-555 224 chr2L 10945072 10945088 chr2L 10945331 10945347 4 259 2.5 2.0 2.2 1.2 275 chr2L 10945072 intron dpr2 - chr2L 10945210 intron dpr2 - chr2L 10945347 intron dpr2 - chr2L_4_10945001 chr2L_10945001 RAL-555 225 chr2L 10946942 10946977 chr2L 10956157 10956192 roo 6 9215 3.0 5.5 4.2 1.2 9250 chr2L 10946942 intron dpr2 - chr2L 10951567 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-555 226 chr2L 11142512 11142542 chr2L 11142594 11142624 4 82 1.5 0.5 1.0 2.0 112 chr2L 11142512 intron Gyc32E - chr2L 11142568 intron Gyc32E - chr2L 11142624 intron Gyc32E - chr2L_4_11140001 chr2L_11140001 RAL-555 227 chr2L 11145704 11145732 chr2L 11145842 11145870 9 138 3.0 1.0 2.0 3.0 166 chr2L 11145704 intron Gyc32E - chr2L 11145787 intron Gyc32E - chr2L 11145870 intron Gyc32E - chr2L_9_11145001 chr2L_11145001 RAL-555 228 chr2L 11183788 11183812 chr2L 11183882 11183908 9 95 2.5 3.5 3.0 2.2 120 chr2L 11183788 intron Ca-beta - chr2L 11183848 intron Ca-beta - chr2L 11183908 intron Ca-beta - chr2L_9_11180001 chr2L_11180001 RAL-555 229 chr2L 11240504 11240536 chr2L 11240630 11240662 9 126 3.0 4.0 3.5 2.0 158 chr2L 11240504 intron ab + chr2L 11240583 intron ab + chr2L 11240662 intron ab + chr2L_9_11240001 chr2L_11240001 RAL-555 230 chr2L 11292394 11292408 chr2L 11292476 11292490 10 82 2.5 7.5 5.0 1.7 96 chr2L 11292394 intergenic not near genes chr2L 11292442 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_10_11290001 chr2L_11290001 RAL-555 231 chr2L 11380613 11380641 chr2L 11380689 11380718 5 77 2.0 1.0 1.5 2.0 105 chr2L 11380613 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380718 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-555 232 chr2L 11404790 11404810 chr2L 11404866 11404886 8 76 0.0 6.0 3.0 2.0 96 chr2L 11404790 intergenic not near genes chr2L 11404838 intergenic not near genes chr2L 11404886 intergenic not near genes chr2L_8_11400001 chr2L_11400001 RAL-555 233 chr2L 11418662 11418686 chr2L 11418741 11418765 7 79 3.0 2.0 2.5 2.0 103 chr2L 11418662 intergenic not near genes chr2L 11418714 intergenic not near genes chr2L 11418765 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-555 234 chr2L 11455561 11455594 chr2L 11455646 11455678 19 85 2.5 0.0 1.2 8.6 117 chr2L 11455561 intergenic not near genes chr2L 11455620 intergenic not near genes chr2L 11455678 intergenic not near genes chr2L_19_11455001 chr2L_11455001 RAL-555 235 chr2L 11540596 11540605 chr2L 11547998 11548006 Tabor 5 7402 1.0 5.5 3.2 1.2 7410 chr2L 11540596 intergenic not near genes chr2L 11544301 intergenic not near genes chr2L 11548006 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-555 236 chr2L 11563634 11563670 chr2L 11568838 11568874 copia 12 5204 3.5 3.0 3.2 2.9 5240 chr2L 11563634 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-555 237 chr2L 11610187 11610206 chr2L 11610427 11610446 6 238 3.5 3.5 3.5 1.3 259 chr2L 11610187 intron kek2 + chr2L 11610316 intron kek2 + chr2L 11610446 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-555 238 chr2L 11614060 11614084 chr2L 11615555 11615579 hopper2 7 1495 2.0 3.5 2.8 1.8 1519 chr2L 11614060 intron kek2 + chr2L 11614820 intron kek2 + chr2L 11615579 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-555 239 chr2L 11684387 11684408 chr2L 11684624 11684642 7 237 1.0 2.0 1.5 2.8 255 chr2L 11684387 intergenic not near genes chr2L 11684514 intergenic not near genes chr2L 11684642 intergenic not near genes chr2L_7_11680001 chr2L_11680001 RAL-555 240 chr2L 11713507 11713540 chr2L 11720975 11721007 blood 12 7468 2.0 2.0 2.0 4.0 7500 chr2L 11713507 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-555 241 chr2L 11770597 11770626 chr2L 11770684 11770713 10 87 4.5 1.0 2.8 2.6 116 chr2L 11770597 intergenic not near genes chr2L 11770655 intergenic not near genes chr2L 11770713 intergenic not near genes chr2L_10_11770001 chr2L_11770001 RAL-555 242 chr2L 11820430 11820460 chr2L 11820511 11820541 13 81 2.0 3.0 2.5 3.7 111 chr2L 11820430 intron Pde1c - chr2L 11820486 intron Pde1c - chr2L 11820541 intron Pde1c - chr2L_13_11820001 chr2L_11820001 RAL-555 243 chr2L 11841349 11841369 chr2L 11841446 11841466 5 97 2.5 0.0 1.2 2.3 117 chr2L 11841349 intron Pde1c - chr2L 11841408 intron Pde1c - chr2L 11841466 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-555 244 chr2L 11870947 11870977 chr2L 11871025 11871055 4 78 0.0 2.0 1.0 2.0 108 chr2L 11870947 intron Pde1c - chr2L 11871001 intron Pde1c - chr2L 11871055 intron Pde1c - chr2L_4_11870001 chr2L_11870001 RAL-555 245 chr2L 11953739 11953770 chr2L 11953819 11953850 8 80 0.5 2.5 1.5 3.2 111 chr2L 11953739 3` UTR CR43314 - chr2L 11953794 3` UTR CR43314 - chr2L 11953850 3` UTR CR43314 - chr2L_8_11950001 chr2L_11950001 RAL-555 246 chr2L 12176215 12176244 chr2L 12176296 12176325 9 81 3.0 4.0 3.5 2.0 110 chr2L 12176215 intron,intron aret +,atilla - chr2L 12176270 intron,intron aret +,atilla - chr2L 12176325 intron,intron aret +,atilla - chr2L_9_12175001 chr2L_12175001 RAL-555 247 chr2L 12192363 12192396 chr2L 12192484 12192516 8 121 2.0 5.0 3.5 1.8 153 chr2L 12192363 intron aret + chr2L 12192440 intron aret + chr2L 12192516 intron aret + chr2L_8_12190001 chr2L_12190001 RAL-555 248 chr2L 12236288 12236317 chr2L 12236366 12236395 6 78 2.0 2.5 2.2 1.9 107 chr2L 12236288 intron aret + chr2L 12236342 intron aret + chr2L 12236395 intron aret + chr2L_6_12235001 chr2L_12235001 RAL-555 249 chr2L 12272165 12272196 chr2L 12272240 12272272 12 76 1.5 2.5 2.0 4.0 107 chr2L 12272165 intron aret + chr2L 12272218 intron aret + chr2L 12272272 intron aret + chr2L_12_12270001 chr2L_12270001 RAL-555 250 chr2L 12387899 12387911 chr2L 12388001 12388018 7 106 1.0 2.0 1.5 2.8 119 chr2L 12387899 intron bru-2 + chr2L 12387958 intron bru-2 + chr2L 12388018 intron bru-2 + chr2L_7_12385001 chr2L_12385001 RAL-555 251 chr2L 12394987 12394998 chr2L 12395099 12395110 5 112 2.5 2.0 2.2 1.6 123 chr2L 12394987 intron bru-2 + chr2L 12395048 intron bru-2 + chr2L 12395110 intron bru-2 + chr2L_5_12395001 chr2L_12395001 RAL-555 252 chr2L 12471134 12471141 chr2L 12471210 12471217 4 76 1.0 7.5 4.2 0.8 83 chr2L 12471134 intron bun - chr2L 12471176 intron bun - chr2L 12471217 intron bun - chr2L_4_12470001 chr2L_12470001 RAL-555 253 chr2L 12529247 12529442 chr2L 12529380 12529518 5 87 2.0 2.0 2.0 1.7 271 chr2L 12529247 intron bun - chr2L 12529382 intron bun - chr2L 12529518 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-555 254 chr2L 12558326 12558347 chr2L 12565455 12565476 HMS-Beagle 5 7129 1.0 3.0 2.0 1.7 7150 chr2L 12558326 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565476 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-555 255 chr2L 12625159 12625191 chr2L 12625252 12625284 17 93 0.5 3.5 2.0 5.7 125 chr2L 12625159 intron,intron nub +,Ref2 - chr2L 12625222 intron,intron nub +,Ref2 - chr2L 12625284 intron,intron nub +,Ref2 - chr2L_17_12625001 chr2L_12625001 RAL-555 256 chr2L 12653788 12653811 chr2L 12653905 12653928 4 117 2.5 2.5 2.5 1.1 140 chr2L 12653788 intergenic not near genes chr2L 12653858 intergenic not near genes chr2L 12653928 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-555 257 chr2L 12682882 12682904 chr2L 12682961 12682982 7 79 5.0 6.0 5.5 1.1 100 chr2L 12682882 intron pdm2 + chr2L 12682932 intron pdm2 + chr2L 12682982 intron pdm2 + chr2L_7_12680001 chr2L_12680001 RAL-555 258 chr2L 12728918 12728941 chr2L 12729161 12729184 pogo 10 243 2.5 3.5 3.0 2.5 266 chr2L 12728918 intron MRP + chr2L 12729051 intron MRP + chr2L 12729184 exon MRP + chr2L_10_12725001 chr2L_12725001 RAL-555 259 chr2L 12731055 12731092 chr2L 12735822 12735859 F-element 4 4767 3.0 2.5 2.8 1.1 4804 chr2L 12731055 intron MRP + chr2L 12733457 intron MRP + chr2L 12735859 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-555 260 chr2L 12739167 12739196 chr2L 12743948 12743977 Doc 10 4781 3.0 2.0 2.5 2.9 4810 chr2L 12739167 exon MRP + chr2L 12741572 intron MRP + chr2L 12743977 intron MRP + chr2L_10_12740001 chr2L_12740001 RAL-555 261 chr2L 12759207 12759236 chr2L 12759302 12759331 11 95 0.5 4.0 2.2 3.4 124 chr2L 12759207 intergenic not near genes chr2L 12759269 intergenic not near genes chr2L 12759331 intergenic not near genes chr2L_11_12755001 chr2L_12755001 RAL-555 262 chr2L 12791604 12791625 chr2L 12795279 12795300 F-element 6 3674 5.5 6.0 5.8 0.9 3696 chr2L 12791604 intergenic not near genes chr2L 12793452 intergenic not near genes chr2L 12795300 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-555 263 chr2L 12835561 12835584 chr2L 12835670 12835693 4 109 1.0 0.5 0.8 2.2 132 chr2L 12835561 intergenic not near genes chr2L 12835627 intergenic not near genes chr2L 12835693 intergenic not near genes chr2L_4_12835001 chr2L_12835001 RAL-555 264 chr2L 12861699 12861722 chr2L 12863165 12863184 hobo 7 1466 4.5 4.0 4.2 1.3 1485 chr2L 12861699 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863184 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-555 265 chr2L 12894027 12894054 chr2L 12895494 12895521 hobo 6 1466 4.0 6.5 5.2 1.0 1494 chr2L 12894027 intergenic not near genes chr2L 12894774 intergenic not near genes chr2L 12895521 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-555 266 chr2L 12905476 12905508 chr2L 12905560 12905592 7 84 1.0 2.0 1.5 2.8 116 chr2L 12905476 intergenic not near genes chr2L 12905534 intergenic not near genes chr2L 12905592 intergenic not near genes chr2L_7_12905001 chr2L_12905001 RAL-555 267 chr2L 12933849 12933883 chr2L 12941316 12941348 blood 13 7467 1.5 6.5 4.0 2.6 7499 chr2L 12933849 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_13_12935001 chr2L_12935001 RAL-555 268 chr2L 13146435 13146465 chr2L 13146516 13146546 5 81 0.0 3.0 1.5 2.0 111 chr2L 13146435 intergenic CR44199 + chr2L 13146490 intergenic CR44199 + chr2L 13146546 intergenic CR44199 + chr2L_5_13145001 chr2L_13145001 RAL-555 269 chr2L 13147950 13147961 chr2L 13148031 13148042 4 81 3.5 4.0 3.8 0.8 92 chr2L 13147950 intergenic not near genes chr2L 13147996 intergenic not near genes chr2L 13148042 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-555 270 chr2L 13152227 13152248 chr2L 13152305 13152326 10 78 9.0 0.0 4.5 1.8 99 chr2L 13152227 intergenic not near genes chr2L 13152276 intergenic not near genes chr2L 13152326 intergenic not near genes chr2L_10_13150001 chr2L_13150001 RAL-555 271 chr2L 13154112 13154124 chr2L 13154189 13154202 7 78 3.0 4.0 3.5 1.6 90 chr2L 13154112 intergenic not near genes chr2L 13154157 intergenic not near genes chr2L 13154202 intergenic not near genes chr2L_7_13150001 chr2L_13150001 RAL-555 272 chr2L 13185321 13185351 chr2L 13185400 13185430 15 79 2.5 2.0 2.2 4.7 109 chr2L 13185321 3` UTR CG16974 - chr2L 13185376 3` UTR CG16974 - chr2L 13185430 exon CG16974 - chr2L_15_13185001 chr2L_13185001 RAL-555 273 chr2L 13207573 13207603 chr2L 13207711 13207739 6 137 2.0 0.0 1.0 3.0 166 chr2L 13207573 intron Pect + chr2L 13207656 intron Pect + chr2L 13207739 intron Pect + chr2L_6_13205001 chr2L_13205001 RAL-555 274 chr2L 13241959 13241971 chr2L 13244343 13244355 BS 8 2384 1.5 1.5 1.5 3.2 2396 chr2L 13241959 5` UTR CR45330 + chr2L 13243157 intron CR45330 + chr2L 13244355 5` UTR CR45330 + chr2L_8_13240001 chr2L_13240001 RAL-555 275 chr2L 13248926 13248953 chr2L 13249005 13249033 7 80 4.5 6.0 5.2 1.1 107 chr2L 13248926 intron CG16820 + chr2L 13248980 intron CG16820 + chr2L 13249033 intron CG16820 + chr2L_7_13245001 chr2L_13245001 RAL-555 276 chr2L 13255286 13255299 chr2L 13255429 13255442 5 143 0.0 6.5 3.2 1.2 156 chr2L 13255286 intron CG31728 + chr2L 13255364 intron CG31728 + chr2L 13255442 exon CG31728 + chr2L_5_13255001 chr2L_13255001 RAL-555 277 chr2L 13307799 13307807 chr2L 13307874 13307883 5 76 2.5 0.0 1.2 2.3 84 chr2L 13307799 intron,3` UTR CG43778 -,CG16825 + chr2L 13307841 intron CG43778 - chr2L 13307883 intron CG43778 - chr2L_5_13305001 chr2L_13305001 RAL-555 278 chr2L 13405657 13405681 chr2L 13410453 13410478 Doc 13 4797 2.0 4.0 3.0 3.2 4821 chr2L 13405657 exon CG7110 + chr2L 13408068 intron CG7110 + chr2L 13410478 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-555 279 chr2L 13449465 13449492 chr2L 13456901 13456928 Quasimodo 6 7436 5.0 3.0 4.0 1.2 7463 chr2L 13449465 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456928 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-555 280 chr2L 13481449 13481472 chr2L 13482056 13482079 jockey 6 607 4.5 3.5 4.0 1.2 630 chr2L 13481449 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-555 281 chr2L 13560410 13560421 chr2L 13565230 13565241 F-element 4 4820 3.0 2.0 2.5 1.1 4831 chr2L 13560410 intron kuz + chr2L 13562826 intron kuz + chr2L 13565241 intron kuz + chr2L_4_13560001 chr2L_13560001 RAL-555 282 chr2L 13622134 13622165 chr2L 13622233 13622262 13 97 3.0 2.0 2.5 3.7 128 chr2L 13622134 intron kuz + chr2L 13622198 intron kuz + chr2L 13622262 intron kuz + chr2L_13_13620001 chr2L_13620001 RAL-555 283 chr2L 13631758 13631791 chr2L 13631900 13631933 7 142 2.5 2.0 2.2 2.2 175 chr2L 13631758 intron kuz + chr2L 13631846 intron kuz + chr2L 13631933 intron kuz + chr2L_7_13630001 chr2L_13630001 RAL-555 284 chr2L 13693019 13693035 chr2L 13693094 13693108 4 75 1.0 3.0 2.0 1.3 89 chr2L 13693019 intron CG31814 - chr2L 13693064 intron CG31814 - chr2L 13693108 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-555 285 chr2L 13740090 13740095 chr2L 13740168 13740175 4 80 0.0 2.5 1.2 1.8 85 chr2L 13740090 intergenic not near genes chr2L 13740132 intergenic not near genes chr2L 13740175 intergenic not near genes chr2L_4_13740001 chr2L_13740001 RAL-555 286 chr2L 13752803 13752833 chr2L 13752919 13752951 9 117 4.0 3.5 3.8 1.9 148 chr2L 13752803 intron,intron CR44846 +,TM9SF4 + chr2L 13752877 intron,intron CR44846 +,TM9SF4 + chr2L 13752951 intron,intron CR44846 +,TM9SF4 + chr2L_9_13750001 chr2L_13750001 RAL-555 287 chr2L 13761803 13761835 chr2L 13762914 13762946 Doc 5 1111 3.0 4.5 3.8 1.0 1143 chr2L 13761803 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-555 288 chr2L 13770054 13770081 chr2L 13770151 13770178 7 96 1.0 0.5 0.8 3.9 124 chr2L 13770054 intron TM9SF4 + chr2L 13770116 intron TM9SF4 + chr2L 13770178 intron TM9SF4 + chr2L_7_13770001 chr2L_13770001 RAL-555 289 chr2L 13853084 13853118 chr2L 13862234 13862268 roo 11 9150 4.0 1.5 2.8 2.9 9184 chr2L 13853084 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-555 290 chr2L 13977788 13977818 chr2L 13978116 13978146 9 326 2.5 0.0 1.2 4.1 358 chr2L 13977788 exon Cyp28a5 + chr2L 13977967 intron Cyp28a5 + chr2L 13978146 intron Cyp28a5 + chr2L_9_13975001 chr2L_13975001 RAL-555 291 chr2L 14133024 14133040 chr2L 14133103 14133122 6 81 2.5 3.0 2.8 1.6 98 chr2L 14133024 intergenic not near genes chr2L 14133073 intergenic not near genes chr2L 14133122 intergenic not near genes chr2L_6_14130001 chr2L_14130001 RAL-555 292 chr2L 14148672 14148694 chr2L 14148789 14148812 7 118 2.0 1.5 1.8 2.5 140 chr2L 14148672 intron CG17341 + chr2L 14148742 intron CG17341 + chr2L 14148812 intron CG17341 + chr2L_7_14145001 chr2L_14145001 RAL-555 293 chr2L 14160686 14160718 chr2L 14160772 14160804 9 86 1.0 4.0 2.5 2.6 118 chr2L 14160686 intergenic CG17341 +,CG43332 - chr2L 14160745 intergenic CG17341 +,CG43332 - chr2L 14160804 intergenic CG17341 +,CG43332 - chr2L_9_14160001 chr2L_14160001 RAL-555 294 chr2L 14236237 14236258 chr2L 14236334 14236355 8 97 5.0 0.0 2.5 2.3 118 chr2L 14236237 5` UTR CR44728 + chr2L 14236296 5` UTR CR44728 + chr2L 14236355 intergenic CR44728 + chr2L_8_14235001 chr2L_14235001 RAL-555 295 chr2L 14367352 14367358 chr2L 14367431 14367437 5 79 2.0 0.5 1.2 2.3 85 chr2L 14367352 intergenic not near genes chr2L 14367394 intergenic not near genes chr2L 14367437 intergenic not near genes chr2L_5_14365001 chr2L_14365001 RAL-555 296 chr2L 14367859 14367887 chr2L 14367939 14367967 9 80 3.0 1.5 2.2 2.8 108 chr2L 14367859 intergenic not near genes chr2L 14367913 intergenic not near genes chr2L 14367967 intergenic not near genes chr2L_9_14365001 chr2L_14365001 RAL-555 297 chr2L 14374779 14374802 chr2L 14374870 14374893 5 91 2.0 1.5 1.8 1.8 114 chr2L 14374779 intergenic not near genes chr2L 14374836 intergenic not near genes chr2L 14374893 intergenic not near genes chr2L_5_14370001 chr2L_14370001 RAL-555 298 chr2L 14427504 14427520 chr2L 14427605 14427621 4 101 0.0 4.0 2.0 1.3 117 chr2L 14427504 intergenic not near genes chr2L 14427562 intergenic not near genes chr2L 14427621 intergenic not near genes chr2L_4_14425001 chr2L_14425001 RAL-555 299 chr2L 14564194 14564228 chr2L 14564270 14564302 8 75 2.0 2.0 2.0 2.7 108 chr2L 14564194 intergenic CG3473 - chr2L 14564248 intergenic not near genes chr2L 14564302 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-555 300 chr2L 14569662 14569688 chr2L 14569750 14569777 12 88 2.0 0.0 1.0 6.0 115 chr2L 14569662 intergenic not near genes chr2L 14569720 intergenic not near genes chr2L 14569777 intergenic not near genes chr2L_12_14565001 chr2L_14565001 RAL-555 301 chr2L 14694253 14694285 chr2L 14694377 14694408 8 124 1.5 3.5 2.5 2.3 155 chr2L 14694253 intergenic not near genes chr2L 14694330 intergenic not near genes chr2L 14694408 intergenic not near genes chr2L_8_14690001 chr2L_14690001 RAL-555 302 chr2L 14707206 14707238 chr2L 14707325 14707357 12 119 1.5 2.5 2.0 4.0 151 chr2L 14707206 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707357 intergenic not near genes chr2L_12_14705001 chr2L_14705001 RAL-555 303 chr2L 14718479 14718513 chr2L 14718564 14718598 4 85 3.0 2.0 2.5 1.1 119 chr2L 14718479 intergenic not near genes chr2L 14718538 intergenic not near genes chr2L 14718598 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-555 304 chr2L 14754917 14754951 chr2L 14755026 14755060 7 109 2.5 2.5 2.5 2.0 143 chr2L 14754917 intergenic not near genes chr2L 14754988 intergenic not near genes chr2L 14755060 intergenic not near genes chr2L_7_14750001 chr2L_14750001 RAL-555 305 chr2L 14778813 14778832 chr2L 14779101 14779120 7 288 2.5 2.5 2.5 2.0 307 chr2L 14778813 intergenic not near genes chr2L 14778966 intergenic not near genes chr2L 14779120 intergenic not near genes chr2L_7_14775001 chr2L_14775001 RAL-555 306 chr2L 14803887 14803910 chr2L 14809090 14809113 copia 8 5203 4.0 4.5 4.2 1.5 5226 chr2L 14803887 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-555 307 chr2L 14840976 14841008 chr2L 14841063 14841095 10 87 1.0 3.5 2.2 3.1 119 chr2L 14840976 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841095 3` UTR CR43805 - chr2L_10_14840001 chr2L_14840001 RAL-555 308 chr2L 14884692 14884698 chr2L 14884769 14884773 4 76 4.0 3.0 3.5 0.9 81 chr2L 14884692 intergenic CR45302 + chr2L 14884732 intergenic CR45302 + chr2L 14884773 intergenic CR45302 + chr2L_4_14880001 chr2L_14880001 RAL-555 309 chr2L 14889955 14889988 chr2L 14890380 14890413 jockey 12 425 2.0 4.5 3.2 2.9 458 chr2L 14889955 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_12_14890001 chr2L_14890001 RAL-555 310 chr2L 14939648 14939671 chr2L 14939775 14939797 7 126 3.5 1.0 2.2 2.2 149 chr2L 14939648 intron CG42313 - chr2L 14939722 intron CG42313 - chr2L 14939797 intron CG42313 - chr2L_7_14935001 chr2L_14935001 RAL-555 311 chr2L 14945440 14945457 chr2L 14945535 14945551 7 96 0.5 1.5 1.0 3.5 111 chr2L 14945440 intron CG42313 - chr2L 14945496 intron CG42313 - chr2L 14945551 intron CG42313 - chr2L_7_14945001 chr2L_14945001 RAL-555 312 chr2L 14984375 14984397 chr2L 14991977 14991999 opus 7 7602 3.0 1.5 2.2 2.2 7624 chr2L 14984375 intron mol - chr2L 14988187 intron mol - chr2L 14991999 intron mol - chr2L_7_14985001 chr2L_14985001 RAL-555 313 chr2L 15003549 15003555 chr2L 15003630 15003639 7 83 5.5 5.5 5.5 1.1 90 chr2L 15003549 intergenic not near genes chr2L 15003594 intergenic not near genes chr2L 15003639 intergenic not near genes chr2L_7_15000001 chr2L_15000001 RAL-555 314 chr2L 15021446 15021474 chr2L 15021522 15021550 10 76 0.5 3.5 2.0 3.3 104 chr2L 15021446 intron GABA-B-R1 + chr2L 15021498 intron GABA-B-R1 + chr2L 15021550 intron GABA-B-R1 + chr2L_10_15020001 chr2L_15020001 RAL-555 315 chr2L 15053130 15053135 chr2L 15053207 15053212 4 77 0.0 4.5 2.2 1.2 82 chr2L 15053130 intron ck - chr2L 15053171 intron ck - chr2L 15053212 intron ck - chr2L_4_15050001 chr2L_15050001 RAL-555 316 chr2L 15078069 15078090 chr2L 15078157 15078178 6 88 2.5 3.5 3.0 1.5 109 chr2L 15078069 intron CG15270 + chr2L 15078124 intron CG15270 + chr2L 15078178 intron CG15270 + chr2L_6_15075001 chr2L_15075001 RAL-555 317 chr2L 15226377 15226394 chr2L 15226453 15226470 5 76 1.5 2.5 2.0 1.7 93 chr2L 15226377 intergenic not near genes chr2L 15226424 intergenic not near genes chr2L 15226470 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-555 318 chr2L 15307978 15307981 chr2L 15308054 15308057 4 76 2.5 3.5 3.0 1.0 79 chr2L 15307978 intergenic not near genes chr2L 15308018 intergenic not near genes chr2L 15308057 intergenic not near genes chr2L_4_15305001 chr2L_15305001 RAL-555 319 chr2L 15403239 15403253 chr2L 15403316 15403331 6 78 6.5 0.0 3.2 1.4 92 chr2L 15403239 intergenic not near genes chr2L 15403285 intergenic not near genes chr2L 15403331 intergenic not near genes chr2L_6_15400001 chr2L_15400001 RAL-555 320 chr2L 15497394 15497416 chr2L 15497503 15497521 9 108 0.5 5.0 2.8 2.4 127 chr2L 15497394 intergenic not near genes chr2L 15497458 intergenic not near genes chr2L 15497521 intergenic not near genes chr2L_9_15495001 chr2L_15495001 RAL-555 321 chr2L 15556543 15556580 chr2L 15556647 15556684 10 104 2.5 2.0 2.2 3.1 141 chr2L 15556543 intron kek3 + chr2L 15556614 intron kek3 + chr2L 15556684 intron kek3 + chr2L_10_15555001 chr2L_15555001 RAL-555 322 chr2L 15574984 15575007 chr2L 15575394 15575417 13 410 1.0 2.0 1.5 5.2 433 chr2L 15574984 intron kek3 + chr2L 15575200 intron kek3 + chr2L 15575417 intron kek3 + chr2L_13_15575001 chr2L_15575001 RAL-555 323 chr2L 15586408 15586442 chr2L 15593460 15593494 297 10 7052 3.5 3.0 3.2 2.4 7086 chr2L 15586408 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593494 intergenic not near genes chr2L_10_15585001 chr2L_15585001 RAL-555 324 chr2L 15598769 15598800 chr2L 15598848 15598879 5 79 1.5 0.0 0.8 2.8 110 chr2L 15598769 intergenic not near genes chr2L 15598824 intergenic not near genes chr2L 15598879 intergenic not near genes chr2L_5_15595001 chr2L_15595001 RAL-555 325 chr2L 15821059 15821079 chr2L 15821159 15821179 6 100 0.0 5.0 2.5 1.7 120 chr2L 15821059 intergenic not near genes chr2L 15821119 intergenic not near genes chr2L 15821179 intergenic not near genes chr2L_6_15820001 chr2L_15820001 RAL-555 326 chr2L 15852044 15852078 chr2L 15852128 15852162 18 84 4.0 3.5 3.8 3.8 118 chr2L 15852044 intergenic not near genes chr2L 15852103 intergenic CG13243 + chr2L 15852162 intergenic CG13243 + chr2L_18_15850001 chr2L_15850001 RAL-555 327 chr2L 15935206 15935219 chr2L 15935296 15935309 8 90 4.0 4.0 4.0 1.6 103 chr2L 15935206 intron beat-Ib - chr2L 15935258 intron beat-Ib - chr2L 15935309 intron beat-Ib - chr2L_8_15935001 chr2L_15935001 RAL-555 328 chr2L 15948928 15948947 chr2L 15949029 15949048 7 101 1.5 2.5 2.0 2.3 120 chr2L 15948928 intron beat-Ib - chr2L 15948988 intron beat-Ib - chr2L 15949048 intron beat-Ib - chr2L_7_15945001 chr2L_15945001 RAL-555 329 chr2L 15956025 15956055 chr2L 15957492 15957522 hobo 11 1467 2.0 5.0 3.5 2.4 1497 chr2L 15956025 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957522 intron beat-Ib - chr2L_11_15955001 chr2L_15955001 RAL-555 330 chr2L 15996501 15996532 chr2L 15996585 15996616 8 84 2.0 1.0 1.5 3.2 115 chr2L 15996501 intergenic not near genes chr2L 15996558 intergenic not near genes chr2L 15996616 intergenic not near genes chr2L_8_15995001 chr2L_15995001 RAL-555 331 chr2L 16001462 16001486 chr2L 16001551 16001575 4 89 0.5 2.5 1.5 1.6 113 chr2L 16001462 intron beat-Ic + chr2L 16001518 intron beat-Ic + chr2L 16001575 intron beat-Ic + chr2L_4_16000001 chr2L_16000001 RAL-555 332 chr2L 16059957 16059980 chr2L 16060055 16060078 4 98 1.5 1.5 1.5 1.6 121 chr2L 16059957 intron beat-Ia + chr2L 16060018 intron beat-Ia + chr2L 16060078 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-555 333 chr2L 16065953 16065973 chr2L 16066042 16066062 4 88 3.5 1.0 2.2 1.2 109 chr2L 16065953 intron beat-Ia + chr2L 16066008 intron beat-Ia + chr2L 16066062 intron beat-Ia + chr2L_4_16065001 chr2L_16065001 RAL-555 334 chr2L 10176023 10176023 chr2L 16071771 16071771 4 5895748 23.0 13.0 18.0 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-555 335 chr2L 10522357 10522357 chr2L 16071771 16071771 4 5549414 14.5 13.0 13.8 0.3 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_4_13295001 chr2L_13295001 RAL-555 336 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 13.0 20.0 16.5 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-555 337 chr2L 16115524 16115553 chr2L 16115600 16115629 5 75 4.5 3.0 3.8 1.0 105 chr2L 16115524 intergenic not near genes chr2L 16115576 intergenic not near genes chr2L 16115629 intergenic not near genes chr2L_5_16115001 chr2L_16115001 RAL-555 338 chr2L 16153746 16153762 chr2L 16160812 16160830 297 6 7068 1.5 4.0 2.8 1.6 7084 chr2L 16153746 intergenic not near genes chr2L 16157288 intergenic not near genes chr2L 16160830 intergenic not near genes chr2L_6_16155001 chr2L_16155001 RAL-555 339 chr2L 7862104 7862104 chr2L 16217660 16217660 4 8355556 11.0 20.0 15.5 0.2 8355556 chr2L 7862104 intergenic not near genes chr2L 12039882 exon CG6766 - chr2L 16217660 intergenic not near genes chr2L_4_12035001 chr2L_12035001 RAL-555 340 chr2L 9084337 9084340 chr2L 16217660 16217660 19 7133321 14.0 20.0 17.0 1.1 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_19_12650001 chr2L_12650001 RAL-555 341 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 13.0 20.0 16.5 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-555 342 chr2L 16217660 16217660 chr2L 18622718 18622721 11 2405059 21.5 17.0 19.2 0.5 2405061 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622721 intron MESR3 + chr2L_11_17420001 chr2L_17420001 RAL-555 343 chr2L 16354775 16354785 chr2L 16354867 16354877 11 92 1.0 2.0 1.5 4.4 102 chr2L 16354775 intergenic CaBP1 -,CG4455 + chr2L 16354826 intergenic CaBP1 -,CG4455 + chr2L 16354877 intergenic CaBP1 -,CG4455 + chr2L_11_16350001 chr2L_16350001 RAL-555 344 chr2L 16363959 16363966 chr2L 16364205 16364212 4 246 1.0 1.5 1.2 1.8 253 chr2L 16363959 intergenic not near genes chr2L 16364086 intergenic not near genes chr2L 16364212 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-555 345 chr2L 16372334 16372353 chr2L 16372413 16372433 5 79 3.5 2.0 2.8 1.3 99 chr2L 16372334 intergenic not near genes chr2L 16372384 intergenic not near genes chr2L 16372433 intergenic not near genes chr2L_5_16370001 chr2L_16370001 RAL-555 346 chr2L 16434124 16434130 chr2L 16434206 16434211 4 82 2.5 3.5 3.0 1.0 87 chr2L 16434124 intron CG5888 - chr2L 16434168 intron CG5888 - chr2L 16434211 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-555 347 chr2L 16488077 16488096 chr2L 16488153 16488173 10 77 2.0 4.0 3.0 2.5 96 chr2L 16488077 intergenic CG4580 + chr2L 16488125 intergenic CG4580 + chr2L 16488173 5` UTR CG4580 + chr2L_10_16485001 chr2L_16485001 RAL-555 348 chr2L 16527273 16527294 chr2L 16527361 16527382 5 88 0.0 1.5 0.8 2.8 109 chr2L 16527273 intron CG5953 - chr2L 16527328 intron CG5953 - chr2L 16527382 intron CG5953 - chr2L_5_16525001 chr2L_16525001 RAL-555 349 chr2L 16572212 16572239 chr2L 16572303 16572332 10 93 2.0 2.5 2.2 3.1 120 chr2L 16572212 intron CG42389 + chr2L 16572272 intron CG42389 + chr2L 16572332 intron CG42389 + chr2L_10_16570001 chr2L_16570001 RAL-555 350 chr2L 16709090 16709102 chr2L 16709174 16709186 6 84 2.0 4.0 3.0 1.5 96 chr2L 16709090 intron CG31808 - chr2L 16709138 intron CG31808 - chr2L 16709186 intron CG31808 - chr2L_6_16705001 chr2L_16705001 RAL-555 351 chr2L 16728926 16728956 chr2L 16729561 16729588 5 634 0.5 1.5 1.0 2.5 662 chr2L 16728926 intergenic not near genes chr2L 16729257 intergenic not near genes chr2L 16729588 intergenic CG31812 + chr2L_5_16725001 chr2L_16725001 RAL-555 352 chr2L 16764973 16765001 chr2L 16765052 16765080 8 80 1.5 3.0 2.2 2.5 107 chr2L 16764973 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765080 intergenic not near genes chr2L_8_16765001 chr2L_16765001 RAL-555 353 chr2L 16920011 16920037 chr2L 16920090 16920114 8 79 3.0 3.0 3.0 2.0 103 chr2L 16920011 intergenic not near genes chr2L 16920062 intergenic not near genes chr2L 16920114 intergenic not near genes chr2L_8_16920001 chr2L_16920001 RAL-555 354 chr2L 16958107 16958134 chr2L 16962895 16962922 Doc 9 4788 2.0 2.0 2.0 3.0 4815 chr2L 16958107 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962922 intergenic not near genes chr2L_9_16960001 chr2L_16960001 RAL-555 355 chr2L 17005412 17005435 chr2L 17005509 17005530 8 96 1.5 3.5 2.5 2.3 118 chr2L 17005412 intergenic not near genes chr2L 17005471 intergenic not near genes chr2L 17005530 intergenic not near genes chr2L_8_17005001 chr2L_17005001 RAL-555 356 chr2L 17058008 17058025 chr2L 17058089 17058106 6 81 1.5 2.0 1.8 2.1 98 chr2L 17058008 intergenic not near genes chr2L 17058057 intergenic not near genes chr2L 17058106 intergenic not near genes chr2L_6_17055001 chr2L_17055001 RAL-555 357 chr2L 17087383 17087399 chr2L 17087501 17087517 4 118 2.0 3.0 2.5 1.1 134 chr2L 17087383 intergenic CG12620 + chr2L 17087450 intergenic CG12620 + chr2L 17087517 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-555 358 chr2L 17101905 17101915 chr2L 17101982 17101991 7 77 7.0 3.0 5.0 1.2 86 chr2L 17101905 intergenic not near genes chr2L 17101948 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_7_17100001 chr2L_17100001 RAL-555 359 chr2L 17120843 17120868 chr2L 17120922 17120947 8 79 3.0 5.0 4.0 1.6 104 chr2L 17120843 intergenic not near genes chr2L 17120895 intergenic not near genes chr2L 17120947 intergenic not near genes chr2L_8_17120001 chr2L_17120001 RAL-555 360 chr2L 17158727 17158761 chr2L 17158829 17158863 9 102 3.5 3.0 3.2 2.1 136 chr2L 17158727 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158795 intron,intron CG34106 +,beat-IIIa + chr2L 17158863 intron,intron CG34106 +,beat-IIIa + chr2L_9_17155001 chr2L_17155001 RAL-555 361 chr2L 17167575 17167596 chr2L 17167814 17167837 pogo 7 241 2.0 7.5 4.8 1.2 262 chr2L 17167575 intron,intron CG34106 +,beat-IIIa + chr2L 17167706 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-555 362 chr2L 17199159 17199194 chr2L 17200626 17200661 hobo 13 1467 1.5 2.0 1.8 4.6 1502 chr2L 17199159 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200661 intron beat-IIIc - chr2L_13_17195001 chr2L_17195001 RAL-555 363 chr2L 17264744 17264778 chr2L 17264824 17264858 11 80 3.5 3.5 3.5 2.4 114 chr2L 17264744 intergenic not near genes chr2L 17264801 intergenic not near genes chr2L 17264858 intergenic not near genes chr2L_11_17260001 chr2L_17260001 RAL-555 364 chr2L 17273192 17273207 chr2L 17277972 17277990 F-element 6 4782 4.5 1.5 3.0 1.5 4798 chr2L 17273192 intergenic not near genes chr2L 17275591 intergenic not near genes chr2L 17277990 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-555 365 chr2L 17292882 17292910 chr2L 17292960 17292988 9 78 4.0 3.5 3.8 1.9 106 chr2L 17292882 intergenic not near genes chr2L 17292935 intergenic not near genes chr2L 17292988 intergenic not near genes chr2L_9_17290001 chr2L_17290001 RAL-555 366 chr2L 17294253 17294281 chr2L 17294561 17294589 10 308 6.5 4.5 5.5 1.5 336 chr2L 17294253 intergenic not near genes chr2L 17294421 intergenic not near genes chr2L 17294589 intergenic not near genes chr2L_10_17290001 chr2L_17290001 RAL-555 367 chr2L 17329075 17329105 chr2L 17329203 17329233 11 128 4.0 2.5 3.2 2.6 158 chr2L 17329075 intergenic not near genes chr2L 17329154 intergenic not near genes chr2L 17329233 intergenic not near genes chr2L_11_17325001 chr2L_17325001 RAL-555 368 chr2L 17335543 17335580 chr2L 17336709 17336746 1360 6 1166 0.5 1.5 1.0 3.0 1203 chr2L 17335543 intergenic not near genes chr2L 17336144 intergenic not near genes chr2L 17336746 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-555 369 chr2L 17349007 17349037 chr2L 17349100 17349130 4 93 0.0 3.5 1.8 1.4 123 chr2L 17349007 intergenic not near genes chr2L 17349068 intergenic not near genes chr2L 17349130 intergenic not near genes chr2L_4_17345001 chr2L_17345001 RAL-555 370 chr2L 17360033 17360045 chr2L 17360211 17360223 7 178 2.5 0.0 1.2 3.2 190 chr2L 17360033 intergenic not near genes chr2L 17360128 intergenic not near genes chr2L 17360223 intergenic not near genes chr2L_7_17360001 chr2L_17360001 RAL-555 371 chr2L 17372340 17372369 chr2L 17372420 17372449 4 79 2.0 0.5 1.2 1.8 109 chr2L 17372340 intron Lrch - chr2L 17372394 intron Lrch - chr2L 17372449 intron Lrch - chr2L_4_17370001 chr2L_17370001 RAL-555 372 chr2L 17420781 17420812 chr2L 17421363 17421394 6 582 0.5 2.5 1.5 2.4 613 chr2L 17420781 intron Dif - chr2L 17421088 intron Dif - chr2L 17421394 intron Dif - chr2L_6_17420001 chr2L_17420001 RAL-555 373 chr2L 17425767 17425791 chr2L 17425894 17425918 5 127 1.5 2.5 2.0 1.7 151 chr2L 17425767 intron Dif - chr2L 17425842 intron Dif - chr2L 17425918 intron Dif - chr2L_5_17425001 chr2L_17425001 RAL-555 374 chr2L 17426084 17426113 chr2L 17426188 17426216 13 104 4.0 2.5 3.2 3.1 132 chr2L 17426084 intron Dif - chr2L 17426150 intron Dif - chr2L 17426216 intron Dif - chr2L_13_17425001 chr2L_17425001 RAL-555 375 chr2L 17432016 17432044 chr2L 17432123 17432151 1360 7 107 0.0 1.5 0.8 3.9 135 chr2L 17432016 intron Dif - chr2L 17432084 intron Dif - chr2L 17432151 intron Dif - chr2L_7_17430001 chr2L_17430001 RAL-555 376 chr2L 17517866 17517885 chr2L 17517948 17517967 4 82 2.0 6.0 4.0 0.8 101 chr2L 17517866 intron Dhc36C + chr2L 17517916 intron Dhc36C + chr2L 17517967 intron Dhc36C + chr2L_4_17515001 chr2L_17515001 RAL-555 377 chr2L 17533436 17533446 chr2L 17533523 17533533 6 87 3.0 1.0 2.0 2.0 97 chr2L 17533436 intergenic not near genes chr2L 17533484 intergenic not near genes chr2L 17533533 intergenic not near genes chr2L_6_17530001 chr2L_17530001 RAL-555 378 chr2L 17607473 17607480 chr2L 17607571 17607578 5 98 7.0 1.0 4.0 1.0 105 chr2L 17607473 intergenic CR44412 - chr2L 17607526 intergenic CR44412 - chr2L 17607578 intergenic CR44412 - chr2L_5_17605001 chr2L_17605001 RAL-555 379 chr2L 17620841 17620869 chr2L 17620966 17620994 5 125 2.5 2.0 2.2 1.6 153 chr2L 17620841 intergenic not near genes chr2L 17620918 intergenic not near genes chr2L 17620994 intergenic not near genes chr2L_5_17620001 chr2L_17620001 RAL-555 380 chr2L 17723795 17723799 chr2L 17723888 17723892 4 93 1.0 5.5 3.2 1.0 97 chr2L 17723795 intron CadN - chr2L 17723844 intron CadN - chr2L 17723892 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-555 381 chr2L 17911960 17911987 chr2L 17914135 17914165 pogo 4 2177 1.5 3.5 2.5 1.1 2205 chr2L 17911960 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-555 382 chr2L 17933535 17933551 chr2L 17933926 17933941 11 391 0.0 2.5 1.2 5.0 406 chr2L 17933535 intergenic not near genes chr2L 17933738 intergenic not near genes chr2L 17933941 intergenic not near genes chr2L_11_17930001 chr2L_17930001 RAL-555 383 chr2L 17938687 17938717 chr2L 17938773 17938803 10 86 1.5 0.5 1.0 5.0 116 chr2L 17938687 intergenic CR44399 - chr2L 17938745 intergenic CR44399 - chr2L 17938803 intergenic CR44399 - chr2L_10_17935001 chr2L_17935001 RAL-555 384 chr2L 17943354 17943380 chr2L 17943625 17943651 6 271 1.5 2.5 2.0 2.0 297 chr2L 17943354 intergenic not near genes chr2L 17943502 intergenic not near genes chr2L 17943651 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-555 385 chr2L 17943895 17943917 chr2L 17943998 17944020 7 103 2.5 1.5 2.0 2.3 125 chr2L 17943895 intergenic not near genes chr2L 17943958 intergenic not near genes chr2L 17944020 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-555 386 chr2L 17951945 17951970 chr2L 17953412 17953437 hobo 6 1467 3.0 4.5 3.8 1.2 1492 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952691 intergenic not near genes chr2L 17953437 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-555 387 chr2L 18020744 18020768 chr2L 18020831 18020855 7 87 3.0 3.0 3.0 1.8 111 chr2L 18020744 intron rdo + chr2L 18020800 intron rdo + chr2L 18020855 intron rdo + chr2L_7_18020001 chr2L_18020001 RAL-555 388 chr2L 18026984 18027016 chr2L 18027323 18027355 15 340 2.5 3.5 3.0 3.8 371 chr2L 18026984 5` UTR rdo + chr2L 18027170 intron rdo + chr2L 18027355 intron rdo + chr2L_15_18025001 chr2L_18025001 RAL-555 389 chr2L 18051876 18051909 chr2L 18061023 18061056 roo 9 9147 1.5 4.0 2.8 2.4 9180 chr2L 18051876 intron rdo + chr2L 18056466 intron rdo + chr2L 18061056 intron rdo + chr2L_9_18055001 chr2L_18055001 RAL-555 390 chr2L 18073420 18073455 chr2L 18073534 18073569 12 114 2.5 3.0 2.8 3.2 149 chr2L 18073420 intergenic not near genes chr2L 18073494 intergenic not near genes chr2L 18073569 intergenic not near genes chr2L_12_18070001 chr2L_18070001 RAL-555 391 chr2L 18111249 18111260 chr2L 18111340 18111351 4 91 3.0 4.0 3.5 0.9 102 chr2L 18111249 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111351 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-555 392 chr2L 18254810 18254840 chr2L 18254910 18254940 11 100 2.0 3.0 2.5 3.1 130 chr2L 18254810 intron CG42750 - chr2L 18254875 intron CG42750 - chr2L 18254940 intron CG42750 - chr2L_11_18250001 chr2L_18250001 RAL-555 393 chr2L 18264071 18264089 chr2L 18264148 18264165 5 77 1.5 3.5 2.5 1.4 94 chr2L 18264071 intron CG42750 - chr2L 18264118 intron CG42750 - chr2L 18264165 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-555 394 chr2L 18274043 18274074 chr2L 18274129 18274159 12 86 1.0 4.0 2.5 3.4 116 chr2L 18274043 intron CG42750 - chr2L 18274101 intron CG42750 - chr2L 18274159 intron CG42750 - chr2L_12_18270001 chr2L_18270001 RAL-555 395 chr2L 18408034 18408053 chr2L 18412818 18412837 Doc 4 4784 3.0 0.0 1.5 1.6 4803 chr2L 18408034 intergenic not near genes chr2L 18410436 intergenic not near genes chr2L 18412837 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-555 396 chr2L 18416067 18416101 chr2L 18416229 18416263 9 162 2.0 2.0 2.0 3.0 196 chr2L 18416067 intergenic not near genes chr2L 18416165 intergenic not near genes chr2L 18416263 intergenic not near genes chr2L_9_18415001 chr2L_18415001 RAL-555 397 chr2L 18462839 18462855 chr2L 18462914 18462931 4 75 1.5 3.5 2.5 1.1 92 chr2L 18462839 intron let-7-C + chr2L 18462885 intron let-7-C + chr2L 18462931 intron let-7-C + chr2L_4_18460001 chr2L_18460001 RAL-555 398 chr2L 18561559 18561578 chr2L 18561649 18561670 6 92 1.5 1.5 1.5 2.4 111 chr2L 18561559 intron Pde11 - chr2L 18561614 intron Pde11 - chr2L 18561670 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-555 399 chr2L 16217660 16217660 chr2L 18622718 18622719 8 2405058 21.5 17.0 19.2 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_8_17420001 chr2L_17420001 RAL-555 400 chr2L 18628456 18628489 chr2L 18628546 18628578 9 90 1.5 1.0 1.2 4.1 122 chr2L 18628456 intron MESR3 + chr2L 18628517 intron MESR3 + chr2L 18628578 intron MESR3 + chr2L_9_18625001 chr2L_18625001 RAL-555 401 chr2L 18728515 18728544 chr2L 18728600 18728629 11 85 1.5 3.5 2.5 3.1 114 chr2L 18728515 intron CG10348 - chr2L 18728572 intron CG10348 - chr2L 18728629 intron CG10348 - chr2L_11_18725001 chr2L_18725001 RAL-555 402 chr2L 18791080 18791097 chr2L 18791159 18791176 5 79 2.5 4.0 3.2 1.2 96 chr2L 18791080 intron ham - chr2L 18791128 intron ham - chr2L 18791176 intron ham - chr2L_5_18790001 chr2L_18790001 RAL-555 403 chr2L 18811409 18811422 chr2L 18811491 18811504 4 82 2.5 0.0 1.2 1.8 95 chr2L 18811409 intergenic CG10570 -,CG42502 - chr2L 18811456 intergenic CG10570 -,CG42502 - chr2L 18811504 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-555 404 chr2L 18812562 18812588 chr2L 18812825 18812850 5 263 1.5 2.5 2.0 1.7 288 chr2L 18812562 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812850 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-555 405 chr2L 18826639 18826662 chr2L 18826774 18826797 8 135 6.5 12.0 9.2 0.8 158 chr2L 18826639 3` UTR CG17323 + chr2L 18826718 intergenic CG17323 +,CG17322 + chr2L 18826797 5` UTR CG17322 + chr2L_8_18825001 chr2L_18825001 RAL-555 406 chr2L 18883853 18883881 chr2L 18883934 18883963 10 81 2.0 4.5 3.2 2.4 110 chr2L 18883853 intergenic not near genes chr2L 18883908 intergenic not near genes chr2L 18883963 intergenic not near genes chr2L_10_18880001 chr2L_18880001 RAL-555 407 chr2L 18898399 18898422 chr2L 18898481 18898504 5 82 2.5 1.5 2.0 1.7 105 chr2L 18898399 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898504 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-555 408 chr2L 18902624 18902654 chr2L 18902905 18902935 4 281 2.0 2.5 2.2 1.2 311 chr2L 18902624 intergenic not near genes chr2L 18902780 intergenic not near genes chr2L 18902935 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-555 409 chr2L 19121043 19121066 chr2L 19121121 19121143 6 78 3.0 0.5 1.8 2.1 100 chr2L 19121043 intergenic l(2)37Cc - chr2L 19121093 intergenic l(2)37Cc - chr2L 19121143 intergenic l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-555 410 chr2L 19147268 19147288 chr2L 19147383 19147403 5 115 3.5 0.0 1.8 1.8 135 chr2L 19147268 intron brat + chr2L 19147336 intron brat + chr2L 19147403 intron brat + chr2L_5_19145001 chr2L_19145001 RAL-555 411 chr2L 19163805 19163830 chr2L 19164148 19164173 6 342 2.5 0.5 1.5 2.4 368 chr2L 19163805 intron brat + chr2L 19163989 intron brat + chr2L 19164173 intron brat + chr2L_6_19160001 chr2L_19160001 RAL-555 412 chr2L 19189973 19190004 chr2L 19190127 19190157 7 154 2.0 2.0 2.0 2.3 184 chr2L 19189973 intergenic pigeon +,drl + chr2L 19190065 intergenic pigeon +,drl + chr2L 19190157 intergenic drl +,pigeon + chr2L_7_19190001 chr2L_19190001 RAL-555 413 chr2L 19211248 19211281 chr2L 19211357 19211391 11 110 2.0 1.5 1.8 3.9 143 chr2L 19211248 intergenic not near genes chr2L 19211320 intergenic not near genes chr2L 19211391 intergenic not near genes chr2L_11_19210001 chr2L_19210001 RAL-555 414 chr2L 19226906 19226937 chr2L 19226992 19227023 8 86 3.5 3.5 3.5 1.8 117 chr2L 19226906 intergenic not near genes chr2L 19226964 intergenic not near genes chr2L 19227023 intergenic not near genes chr2L_8_19225001 chr2L_19225001 RAL-555 415 chr2L 19331126 19331155 chr2L 19331228 19331257 17 102 3.5 5.5 4.5 3.1 131 chr2L 19331126 intergenic not near genes chr2L 19331192 intergenic not near genes chr2L 19331257 intergenic not near genes chr2L_17_19330001 chr2L_19330001 RAL-555 416 chr2L 19337563 19337593 chr2L 19338130 19338160 6 566 3.5 2.0 2.8 1.6 597 chr2L 19337563 intergenic not near genes chr2L 19337862 intergenic not near genes chr2L 19338160 intergenic not near genes chr2L_6_19335001 chr2L_19335001 RAL-555 417 chr2L 19345012 19345037 chr2L 19357221 19357246 blood 10 12209 2.0 3.0 2.5 2.9 12234 chr2L 19345012 intron dnt - chr2L 19351129 intron dnt - chr2L 19357246 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-555 418 chr2L 19357546 19357569 chr2L 19357636 19357659 18 90 5.0 5.5 5.2 2.9 113 chr2L 19357546 intron dnt - chr2L 19357602 intron dnt - chr2L 19357659 intron dnt - chr2L_18_19355001 chr2L_19355001 RAL-555 419 chr2L 19389666 19389694 chr2L 19389740 19389770 12 75 5.0 5.0 5.0 2.0 104 chr2L 19389666 intron CG17549 - chr2L 19389718 intron CG17549 - chr2L 19389770 intron CG17549 - chr2L_12_19385001 chr2L_19385001 RAL-555 420 chr2L 19393960 19393995 chr2L 19394074 19394109 13 114 2.5 3.0 2.8 3.4 149 chr2L 19393960 intron CG17544 - chr2L 19394034 intron CG17544 - chr2L 19394109 intron CG17544 - chr2L_13_19390001 chr2L_19390001 RAL-555 421 chr2L 19405630 19405641 chr2L 19405720 19405731 4 90 1.5 2.5 2.0 1.3 101 chr2L 19405630 intron Pax - chr2L 19405680 intron Pax - chr2L 19405731 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-555 422 chr2L 19407716 19407740 chr2L 19407913 19407937 20 197 4.0 2.5 3.2 4.8 221 chr2L 19407716 intron Pax - chr2L 19407826 intron Pax - chr2L 19407937 intron Pax - chr2L_20_19405001 chr2L_19405001 RAL-555 423 chr2L 19441068 19441085 chr2L 19441145 19441162 4 77 8.0 7.0 7.5 0.5 94 chr2L 19441068 intron CG10237 - chr2L 19441115 intron CG10237 - chr2L 19441162 5` UTR CG10237 - chr2L_4_19440001 chr2L_19440001 RAL-555 424 chr2L 19558528 19558550 chr2L 19558632 19558654 5 104 1.0 4.5 2.8 1.3 126 chr2L 19558528 intron Tep5 + chr2L 19558591 intron Tep5 + chr2L 19558654 intron Tep5 + chr2L_5_19555001 chr2L_19555001 RAL-555 425 chr2L 19560003 19560035 chr2L 19560256 19560287 11 252 2.0 1.0 1.5 4.4 284 chr2L 19560003 exon Tep5 + chr2L 19560145 exon Tep5 + chr2L 19560287 intron Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-555 426 chr2L 19560833 19560864 chr2L 19560913 19560944 9 80 4.0 0.0 2.0 3.0 111 chr2L 19560833 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560944 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-555 427 chr2L 19561344 19561368 chr2L 19561485 19561509 12 141 1.0 4.5 2.8 3.2 165 chr2L 19561344 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561509 exon Tep5 + chr2L_12_19560001 chr2L_19560001 RAL-555 428 chr2L 19601572 19601600 chr2L 19601649 19601677 6 77 1.5 4.5 3.0 1.5 105 chr2L 19601572 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601677 intron,intron Lar +,CR44978 - chr2L_6_19600001 chr2L_19600001 RAL-555 429 chr2L 19620094 19620132 chr2L 19621083 19621121 jockey 9 989 2.0 3.0 2.5 2.6 1027 chr2L 19620094 intron Lar + chr2L 19620608 intron Lar + chr2L 19621121 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-555 430 chr2L 19652570 19652602 chr2L 19674004 19674036 opus 4 21434 3.0 3.0 3.0 1.0 21466 chr2L 19652570 intron Lar + chr2L 19663303 intron Lar + chr2L 19674036 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-555 431 chr2L 19689059 19689089 chr2L 19689163 19689193 7 104 2.0 0.5 1.2 3.2 134 chr2L 19689059 intron Lar + chr2L 19689126 intron Lar + chr2L 19689193 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-555 432 chr2L 19697144 19697167 chr2L 19697236 19697260 11 93 2.0 5.0 3.5 2.4 116 chr2L 19697144 intron Lar + chr2L 19697202 intron Lar + chr2L 19697260 intron Lar + chr2L_11_19695001 chr2L_19695001 RAL-555 433 chr2L 19703535 19703570 chr2L 19712671 19712705 roo 16 9136 3.5 0.5 2.0 5.3 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_16_19705001 chr2L_19705001 RAL-555 434 chr2L 19712691 19712721 chr2L 19712774 19712805 8 84 0.5 3.0 1.8 2.9 114 chr2L 19712691 intron Lar + chr2L 19712748 intron Lar + chr2L 19712805 intron Lar + chr2L_8_19710001 chr2L_19710001 RAL-555 435 chr2L 19737356 19737384 chr2L 19740825 19740853 1360 7 3469 0.5 2.5 1.5 2.8 3497 chr2L 19737356 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-555 436 chr2L 19762808 19762839 chr2L 19763050 19763079 pogo 10 241 3.0 1.5 2.2 3.1 271 chr2L 19762808 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763079 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-555 437 chr2L 19773161 19773191 chr2L 19773248 19773278 7 87 3.5 1.5 2.5 2.0 117 chr2L 19773161 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773278 intergenic not near genes chr2L_7_19770001 chr2L_19770001 RAL-555 438 chr2L 19824416 19824434 chr2L 19824499 19824517 7 83 0.5 4.0 2.2 2.2 101 chr2L 19824416 intron sick + chr2L 19824466 intron sick + chr2L 19824517 intron sick + chr2L_7_19820001 chr2L_19820001 RAL-555 439 chr2L 19994651 19994683 chr2L 19994729 19994761 6 79 2.5 0.5 1.5 2.4 110 chr2L 19994651 intron CG43861 - chr2L 19994706 intron CG43861 - chr2L 19994761 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-555 440 chr2L 20000055 20000077 chr2L 20000144 20000166 8 89 2.0 6.0 4.0 1.6 111 chr2L 20000055 intron CG43861 - chr2L 20000110 intron CG43861 - chr2L 20000166 intron,3` UTR CG43861 -,CR44908 - chr2L_8_20000001 chr2L_20000001 RAL-555 441 chr2L 20005873 20005902 chr2L 20010949 20010978 flea 10 5076 3.0 4.5 3.8 2.1 5105 chr2L 20005873 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010978 intron CG43861 - chr2L_10_20005001 chr2L_20005001 RAL-555 442 chr2L 20124326 20124359 chr2L 20124404 20124437 4 78 4.0 0.0 2.0 1.3 111 chr2L 20124326 intergenic not near genes chr2L 20124382 intergenic not near genes chr2L 20124437 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-555 443 chr2L 20272110 20272145 chr2L 20282821 20282856 copia 8 10711 2.5 5.0 3.8 1.7 10746 chr2L 20272110 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282856 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-555 444 chr2L 20296506 20296534 chr2L 20296587 20296615 6 81 0.5 3.5 2.0 2.0 109 chr2L 20296506 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296615 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-555 445 chr2L 20298823 20298838 chr2L 20298906 20298921 7 83 6.0 4.0 5.0 1.2 98 chr2L 20298823 intergenic not near genes chr2L 20298872 intergenic not near genes chr2L 20298921 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-555 446 chr2L 20303164 20303191 chr2L 20310632 20310656 blood 6 7468 0.0 3.5 1.8 2.1 7492 chr2L 20303164 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310656 intergenic not near genes chr2L_6_20305001 chr2L_20305001 RAL-555 447 chr2L 20310879 20310919 chr2L 20310958 20310998 4 79 0.0 1.5 0.8 2.2 119 chr2L 20310879 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310998 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-555 448 chr2L 20367555 20367581 chr2L 20367690 20367718 10 136 1.5 1.5 1.5 4.0 163 chr2L 20367555 intergenic not near genes chr2L 20367636 intergenic not near genes chr2L 20367718 intergenic not near genes chr2L_10_20365001 chr2L_20365001 RAL-555 449 chr2L 20372849 20372875 chr2L 20372927 20372951 9 78 3.5 3.0 3.2 2.1 102 chr2L 20372849 exon Ugt37a1 - chr2L 20372900 exon Ugt37a1 - chr2L 20372951 exon Ugt37a1 - chr2L_9_20370001 chr2L_20370001 RAL-555 450 chr2L 20498689 20498705 chr2L 20498788 20498804 7 99 3.5 4.5 4.0 1.4 115 chr2L 20498689 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-555 451 chr2L 20500426 20500443 chr2L 20500506 20500523 5 80 1.0 2.5 1.8 1.8 97 chr2L 20500426 intergenic not near genes chr2L 20500474 intergenic not near genes chr2L 20500523 intergenic not near genes chr2L_5_20500001 chr2L_20500001 RAL-555 452 chr2L 20568667 20568678 chr2L 20569057 20569068 X-element 6 390 3.5 3.5 3.5 1.3 401 chr2L 20568667 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569068 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-555 453 chr2L 20576217 20576245 chr2L 20583685 20583713 blood 6 7468 5.5 2.0 3.8 1.2 7496 chr2L 20576217 intergenic CR45347 + chr2L 20579965 intergenic not near genes chr2L 20583713 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-555 454 chr2L 20601787 20601811 chr2L 20601865 20601889 11 78 2.5 1.0 1.8 3.9 102 chr2L 20601787 intron CR44909 - chr2L 20601838 intron CR44909 - chr2L 20601889 intron CR44909 - chr2L_11_20600001 chr2L_20600001 RAL-555 455 chr2L 20602723 20602746 chr2L 20602811 20602834 4 88 1.5 3.0 2.2 1.2 111 chr2L 20602723 intron CR44909 - chr2L 20602778 intron CR44909 - chr2L 20602834 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-555 456 chr2L 20763621 20763651 chr2L 20770331 20770361 5 6710 14.5 18.0 16.2 0.3 6740 chr2L 20763621 exon dia + chr2L 20766991 3` UTR dia + chr2L 20770361 intergenic cad + chr2L_5_20765001 chr2L_20765001 RAL-555 457 chr2L 20778235 20778266 chr2L 20778318 20778349 8 83 1.5 3.5 2.5 2.3 114 chr2L 20778235 intron cad + chr2L 20778292 intron cad + chr2L 20778349 intron cad + chr2L_8_20775001 chr2L_20775001 RAL-555 458 chr2L 20818511 20818530 chr2L 20818592 20818611 9 81 4.0 2.0 3.0 2.2 100 chr2L 20818511 exon CheB38a - chr2L 20818561 intergenic CheB38a - chr2L 20818611 intergenic CheB38a - chr2L_9_20815001 chr2L_20815001 RAL-555 459 chr2L 20840027 20840055 chr2L 20840239 20840267 8 212 3.5 5.0 4.2 1.5 240 chr2L 20840027 intergenic not near genes chr2L 20840147 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_8_20840001 chr2L_20840001 RAL-555 460 chr2L 20906831 20906854 chr2L 20907014 20907037 6 183 6.0 4.0 5.0 1.0 206 chr2L 20906831 intron,intron CG43739 -,sky - chr2L 20906934 intron,intron CG43739 -,sky - chr2L 20907037 intron,intron CG43739 -,sky - chr2L_6_20905001 chr2L_20905001 RAL-555 461 chr2L 20946944 20946953 chr2L 20947031 20947040 6 87 4.5 4.0 4.2 1.2 96 chr2L 20946944 intergenic CR44606 - chr2L 20946992 intergenic CR44606 - chr2L 20947040 intergenic CR44606 - chr2L_6_20945001 chr2L_20945001 RAL-555 462 chr2L 20967088 20967107 chr2L 20967174 20967193 6 86 4.0 4.0 4.0 1.2 105 chr2L 20967088 3` UTR CG42238 - chr2L 20967140 3` UTR CG42238 - chr2L 20967193 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-555 463 chr2L 20976646 20976674 chr2L 20981461 20981489 X-element 6 4814 2.5 1.5 2.0 2.0 4843 chr2L 20976646 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981489 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-555 464 chr2L 20984755 20984767 chr2L 20984847 20984859 6 92 2.5 3.0 2.8 1.6 104 chr2L 20984755 intron CG42238 - chr2L 20984807 intron CG42238 - chr2L 20984859 intron CG42238 - chr2L_6_20980001 chr2L_20980001 RAL-555 465 chr2L 20986904 20986936 chr2L 20987241 20987273 12 337 4.5 2.5 3.5 2.7 369 chr2L 20986904 intron CG42238 - chr2L 20987088 intron CG42238 - chr2L 20987273 intron CG42238 - chr2L_12_20985001 chr2L_20985001 RAL-555 466 chr2L 20991035 20991065 chr2L 20991113 20991143 8 78 2.0 1.5 1.8 2.9 108 chr2L 20991035 intron CG42238 - chr2L 20991089 intron CG42238 - chr2L 20991143 intron CG42238 - chr2L_8_20990001 chr2L_20990001 RAL-555 467 chr2L 21020272 21020303 chr2L 21023949 21023980 NOF 9 3677 2.5 4.5 3.5 2.0 3708 chr2L 21020272 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023980 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-555 468 chr2L 21041135 21041167 chr2L 21049396 21049428 Tirant 15 8261 2.5 4.5 3.5 3.3 8293 chr2L 21041135 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_15_21045001 chr2L_21045001 RAL-555 469 chr2L 21074925 21074943 chr2L 21075016 21075034 4 91 3.5 3.0 3.2 1.0 109 chr2L 21074925 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075034 intergenic tadr + chr2L_4_21070001 chr2L_21070001 RAL-555 470 chr2L 21113689 21113718 chr2L 21113782 21113811 11 92 1.0 4.0 2.5 3.1 122 chr2L 21113689 intron Nhe2 + chr2L 21113750 intron Nhe2 + chr2L 21113811 intron Nhe2 + chr2L_11_21110001 chr2L_21110001 RAL-555 471 chr2L 21286603 21286633 chr2L 21286681 21286711 12 78 3.5 1.0 2.2 3.8 108 chr2L 21286603 exon Mio - chr2L 21286657 intron Mio - chr2L 21286711 intron Mio - chr2L_12_21285001 chr2L_21285001 RAL-555 472 chr2L 21347555 21347574 chr2L 21355027 21355045 blood 5 7471 2.0 1.5 1.8 1.8 7490 chr2L 21347555 intron Tsp39D + chr2L 21351300 intron Tsp39D + chr2L 21355045 intron Tsp39D + chr2L_5_21350001 chr2L_21350001 RAL-555 473 chr2L 21597029 21597055 chr2L 21604772 21604795 roo 14 7744 5.0 4.0 4.5 2.5 7766 chr2L 21597029 intergenic not near genes chr2L 21600912 intergenic not near genes chr2L 21604795 intergenic not near genes chr2L_14_21600001 chr2L_21600001 RAL-555 474 chr2L 21691825 21691852 chr2L 21698295 21698322 Burdock 7 6469 3.5 0.0 1.8 2.5 6497 chr2L 21691825 intron CG31619 + chr2L 21695074 intron CG31619 + chr2L 21698322 intron CG31619 + chr2L_7_21695001 chr2L_21695001 RAL-555 475 chr2L 21788738 21788771 chr2L 21788816 21788849 11 78 1.5 2.5 2.0 3.7 111 chr2L 21788738 intron CG31612 - chr2L 21788794 intron CG31612 - chr2L 21788849 intron CG31612 - chr2L_11_21785001 chr2L_21785001 RAL-555 476 chr2L 21799958 21799968 chr2L 21800056 21800066 5 98 2.5 3.5 3.0 1.2 108 chr2L 21799958 intergenic not near genes chr2L 21800012 intergenic not near genes chr2L 21800066 intergenic not near genes chr2L_5_21800001 chr2L_21800001 RAL-555 477 chr2L 21819337 21819357 chr2L 21819425 21819445 6 88 2.0 1.5 1.8 2.1 108 chr2L 21819337 intergenic CR44786 + chr2L 21819391 intergenic CR44786 + chr2L 21819445 intergenic CR44786 + chr2L_6_21815001 chr2L_21815001 RAL-555 478 chr2L 21839004 21839037 chr2L 21839080 21839113 15 76 2.0 1.5 1.8 5.4 109 chr2L 21839004 intergenic not near genes chr2L 21839058 intergenic not near genes chr2L 21839113 intergenic not near genes chr2L_15_21835001 chr2L_21835001 RAL-555 479 chr2L 21852374 21852404 chr2L 21852689 21852719 5 315 2.5 1.0 1.8 1.8 345 chr2L 21852374 intergenic not near genes chr2L 21852546 intergenic not near genes chr2L 21852719 intergenic not near genes chr2L_5_21850001 chr2L_21850001 RAL-555 480 chr2L 21898843 21898874 chr2L 21898970 21899001 11 128 6.5 6.5 6.5 1.5 158 chr2L 21898843 intergenic not near genes chr2L 21898922 intergenic not near genes chr2L 21899001 intergenic not near genes chr2L_11_21895001 chr2L_21895001 RAL-555 481 chr2L 21953799 21953824 chr2L 21954700 21954725 13 901 24.0 28.5 26.2 0.5 926 chr2L 21953799 intergenic not near genes chr2L 21954262 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_13_21950001 chr2L_21950001 RAL-555 482 chr2L 21962555 21962573 chr2L 21962643 21962661 9 88 3.0 2.5 2.8 2.4 106 chr2L 21962555 intergenic not near genes chr2L 21962608 intergenic not near genes chr2L 21962661 intergenic not near genes chr2L_9_21960001 chr2L_21960001 RAL-555 483 chr2L 21981683 21981715 chr2L 21990847 21990880 roo 15 9165 1.0 2.0 1.5 6.0 9197 chr2L 21981683 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_15_21985001 chr2L_21985001 RAL-555 484 chr2L 21997571 21997596 chr2L 21997778 21997803 9 207 2.5 2.5 2.5 2.6 232 chr2L 21997571 intergenic not near genes chr2L 21997687 intergenic not near genes chr2L 21997803 intergenic not near genes chr2L_9_21995001 chr2L_21995001 RAL-555 485 chr2L 22001651 22001674 chr2L 22001727 22001750 4 76 0.0 1.5 0.8 2.2 99 chr2L 22001651 intergenic not near genes chr2L 22001700 intergenic not near genes chr2L 22001750 intergenic not near genes chr2L_4_22000001 chr2L_22000001 RAL-555 486 chr2L 22005776 22005797 chr2L 22005866 22005887 8 90 0.0 2.0 1.0 4.0 111 chr2L 22005776 intergenic not near genes chr2L 22005832 intergenic not near genes chr2L 22005887 intergenic not near genes chr2L_8_22005001 chr2L_22005001 RAL-555 487 chr2L 22581975 22582002 chr2L 22583764 22583791 S-element 9 1789 3.0 3.0 3.0 2.2 1816 chr2L 22581975 intron CG17494 + chr2L 22582883 intron CG17494 + chr2L 22583791 intron CG17494 + chr2L_9_22580001 chr2L_22580001 RAL-555 488 chr2L 22776422 22776448 chr2L 22778211 22778237 S-element 6 1789 1.0 3.5 2.2 1.9 1815 chr2L 22776422 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778237 intergenic not near genes chr2L_6_22775001 chr2L_22775001 RAL-555 489 chr2L 22941247 22941279 chr2L 22941329 22941361 10 82 3.0 3.0 3.0 2.5 114 chr2L 22941247 3` UTR lt + chr2L 22941304 3` UTR lt + chr2L 22941361 3` UTR lt + chr2L_10_22940001 chr2L_22940001 RAL-555 490 chr2L 23006505 23006538 chr2L 23007181 23007214 Osvaldo 13 676 4.0 3.5 3.8 2.7 709 chr2L 23006505 intron Cht3 - chr2L 23006860 intron Cht3 - chr2L 23007214 intron Cht3 - chr2L_13_23005001 chr2L_23005001 RAL-555 491 chr2L 23161877 23161904 chr2L 23320479 23320506 opus 4 158602 15.5 7.0 11.2 0.3 158629 chr2L 23161877 3` UTR CG12567 - chr2L 23241192 intergenic not near genes chr2L 23320506 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-555 492 chr2R 529324 529346 chr2R 537949 537970 Max-element 7 8625 3.5 1.5 2.5 2.0 8646 chr2R 529324 intron CG40378 + chr2R 533647 intron CG40378 + chr2R 537970 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-555 493 chr2R 552751 552784 chr2R 553969 554002 1360 5 1215 2.0 2.5 2.2 1.6 1251 chr2R 552751 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 554002 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-555 494 chr2R 672951 672978 chr2R 673028 673055 6 77 4.5 1.5 3.0 1.5 104 chr2R 672951 intergenic not near genes chr2R 673003 intergenic not near genes chr2R 673055 intergenic not near genes chr2R_6_670001 chr2R_670001 RAL-555 495 chr2R 1082369 1082384 chr2R 1087144 1087160 Doc 6 4776 2.0 5.0 3.5 1.3 4791 chr2R 1082369 intron rl + chr2R 1084764 intron rl + chr2R 1087160 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-555 496 chr2R 1365866 1365894 chr2R 1365978 1366006 8 112 1.0 3.5 2.2 2.5 140 chr2R 1365866 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366006 intron l(2)41Ab + chr2R_8_1365001 chr2R_1365001 RAL-555 497 chr2R 1755948 1755970 chr2R 1756062 1756084 5 113 1.0 1.0 1.0 2.5 136 chr2R 1755948 intron CG41520 + chr2R 1756016 intron CG41520 + chr2R 1756084 intron CG41520 + chr2R_5_1755001 chr2R_1755001 RAL-555 498 chr2R 2015132 2015162 chr2R 2015209 2015239 7 77 4.5 3.5 4.0 1.4 107 chr2R 2015132 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015239 intron CG17684 - chr2R_7_2015001 chr2R_2015001 RAL-555 499 chr2R 2498985 2499010 chr2R 2508132 2508154 roo 10 9147 4.0 2.5 3.2 2.4 9169 chr2R 2498985 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508154 intron MFS17 - chr2R_10_2500001 chr2R_2500001 RAL-555 500 chr2R 2508308 2508337 chr2R 2508445 2508475 5 137 3.0 3.0 3.0 1.2 167 chr2R 2508308 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508475 intron MFS17 - chr2R_5_2505001 chr2R_2505001 RAL-555 501 chr2R 3291929 3291958 chr2R 3915098 3915127 4 623168 6.0 12.5 9.2 0.4 623198 chr2R 3291929 intergenic not near genes chr2R 3603528 intergenic not near genes chr2R 3915127 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-555 502 chr2R 3293748 3293762 chr2R 3293826 3293839 4 78 3.5 0.0 1.8 1.4 91 chr2R 3293748 intergenic not near genes chr2R 3293794 intergenic not near genes chr2R 3293839 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-555 503 chr2R 3532617 3532635 chr2R 3536056 3536078 Doc 5 3442 2.5 1.5 2.0 1.7 3461 chr2R 3532617 intergenic not near genes chr2R 3534348 intergenic not near genes chr2R 3536078 intergenic not near genes chr2R_5_3530001 chr2R_3530001 RAL-555 504 chr2R 4312956 4312985 chr2R 4313040 4313069 8 84 2.0 4.0 3.0 2.0 113 chr2R 4312956 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313069 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-555 505 chr2R 4602849 4602874 chr2R 4603201 4603227 9 354 2.5 3.0 2.8 2.4 378 chr2R 4602849 intron p120ctn + chr2R 4603038 intron p120ctn + chr2R 4603227 intron p120ctn + chr2R_9_4600001 chr2R_4600001 RAL-555 506 chr2R 4820914 4820949 chr2R 4820990 4821025 9 75 2.5 1.5 2.0 3.0 111 chr2R 4820914 intron CG17528 - chr2R 4820970 intron CG17528 - chr2R 4821025 intron CG17528 - chr2R_9_4820001 chr2R_4820001 RAL-555 507 chr2R 4996335 4996345 chr2R 4996463 4996473 5 128 1.0 4.5 2.8 1.3 138 chr2R 4996335 intron Ir41a + chr2R 4996404 intron Ir41a + chr2R 4996473 intron Ir41a + chr2R_5_4995001 chr2R_4995001 RAL-555 508 chr2R 5008875 5008894 chr2R 5009944 5009963 6 1069 0.0 3.0 1.5 2.4 1088 chr2R 5008875 intron Ir41a + chr2R 5009419 intron Ir41a + chr2R 5009963 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-555 509 chr2R 5028513 5028521 chr2R 5028705 5028714 5 193 12.0 0.0 6.0 0.7 201 chr2R 5028513 intergenic not near genes chr2R 5028614 intergenic not near genes chr2R 5028714 intergenic not near genes chr2R_5_5025001 chr2R_5025001 RAL-555 510 chr2R 5022730 5022760 chr2R 5031540 5031570 5 8810 17.5 21.5 19.5 0.2 8840 chr2R 5022730 intergenic not near genes chr2R 5027150 intergenic not near genes chr2R 5031570 intergenic CR44105 - chr2R_5_5025001 chr2R_5025001 RAL-555 511 chr2R 5075927 5075962 chr2R 5076089 5076124 6 162 26.0 20.0 23.0 0.2 197 chr2R 5075927 intergenic not near genes chr2R 5076026 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-555 512 chr2R 5237352 5237371 chr2R 5237434 5237453 5 82 2.0 0.0 1.0 2.5 101 chr2R 5237352 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237453 intron Nipped-A - chr2R_5_5235001 chr2R_5235001 RAL-555 513 chr2R 5256760 5256786 chr2R 5256848 5256874 14 87 5.5 6.0 5.8 2.1 114 chr2R 5256760 intergenic not near genes chr2R 5256817 intergenic not near genes chr2R 5256874 intergenic not near genes chr2R_14_5255001 chr2R_5255001 RAL-555 514 chr2R 5303488 5303516 chr2R 5303576 5303604 10 88 2.0 1.5 1.8 3.6 116 chr2R 5303488 intergenic not near genes chr2R 5303546 intergenic not near genes chr2R 5303604 intergenic not near genes chr2R_10_5300001 chr2R_5300001 RAL-555 515 chr2R 5463130 5463162 chr2R 5463448 5463480 18 317 1.0 3.5 2.2 5.6 350 chr2R 5463130 intergenic not near genes chr2R 5463305 intergenic not near genes chr2R 5463480 intergenic not near genes chr2R_18_5460001 chr2R_5460001 RAL-555 516 chr2R 5472371 5472393 chr2R 5472466 5472488 8 95 3.0 2.0 2.5 2.3 117 chr2R 5472371 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_8_5470001 chr2R_5470001 RAL-555 517 chr2R 5509536 5509545 chr2R 5509632 5509641 4 96 2.0 1.5 1.8 1.4 105 chr2R 5509536 intron CG30438 + chr2R 5509588 intron CG30438 + chr2R 5509641 intron CG30438 + chr2R_4_5505001 chr2R_5505001 RAL-555 518 chr2R 5653373 5653391 chr2R 5653472 5653490 7 99 2.0 3.0 2.5 2.0 117 chr2R 5653373 intergenic CG1344 + chr2R 5653432 intergenic CG1344 + chr2R 5653490 intergenic CG1344 + chr2R_7_5650001 chr2R_5650001 RAL-555 519 chr2R 5664284 5664315 chr2R 5664364 5664395 10 80 2.5 3.5 3.0 2.5 111 chr2R 5664284 5` UTR CR45472 + chr2R 5664340 intron CR45472 + chr2R 5664395 intron CR45472 + chr2R_10_5660001 chr2R_5660001 RAL-555 520 chr2R 5772533 5772550 chr2R 5772627 5772644 4 93 1.5 4.5 3.0 1.0 111 chr2R 5772533 3` UTR Gp210 + chr2R 5772588 3` UTR Gp210 + chr2R 5772644 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-555 521 chr2R 5790468 5790496 chr2R 5790553 5790581 7 85 2.0 2.5 2.2 2.2 113 chr2R 5790468 intergenic not near genes chr2R 5790524 intergenic not near genes chr2R 5790581 intergenic not near genes chr2R_7_5790001 chr2R_5790001 RAL-555 522 chr2R 5859975 5860013 chr2R 5860087 5860125 7 112 2.5 2.5 2.5 2.0 150 chr2R 5859975 3` UTR dpr12 + chr2R 5860050 3` UTR dpr12 + chr2R 5860125 3` UTR dpr12 + chr2R_7_5860001 chr2R_5860001 RAL-555 523 chr2R 5868063 5868089 chr2R 5868183 5868209 7 120 1.0 3.0 2.0 2.3 146 chr2R 5868063 intergenic not near genes chr2R 5868136 intergenic not near genes chr2R 5868209 intergenic not near genes chr2R_7_5865001 chr2R_5865001 RAL-555 524 chr2R 5869275 5869306 chr2R 5874351 5874382 flea 21 5076 3.5 3.5 3.5 4.7 5107 chr2R 5869275 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874382 intergenic not near genes chr2R_21_5870001 chr2R_5870001 RAL-555 525 chr2R 5878929 5878958 chr2R 5879008 5879038 14 80 4.5 2.0 3.2 3.3 109 chr2R 5878929 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879038 intergenic CG44438 - chr2R_14_5875001 chr2R_5875001 RAL-555 526 chr2R 5885365 5885376 chr2R 5885494 5885505 6 129 2.0 2.0 2.0 2.0 140 chr2R 5885365 5` UTR CR44125 + chr2R 5885435 5` UTR CR44125 + chr2R 5885505 5` UTR CR44125 + chr2R_6_5885001 chr2R_5885001 RAL-555 527 chr2R 5902154 5902186 chr2R 5909713 5909745 17.6 6 7559 3.5 0.0 1.8 2.1 7591 chr2R 5902154 intron CG43366 + chr2R 5905950 intron CG43366 + chr2R 5909745 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-555 528 chr2R 6051861 6051889 chr2R 6052134 6052162 9 272 3.0 4.0 3.5 2.0 301 chr2R 6051861 intron CCHa2-R + chr2R 6052012 intron CCHa2-R + chr2R 6052162 intron CCHa2-R + chr2R_9_6050001 chr2R_6050001 RAL-555 529 chr2R 6096711 6096749 chr2R 6101909 6101945 BS 12 5197 1.5 1.0 1.2 5.5 5234 chr2R 6096711 intron EcR - chr2R 6099328 intron EcR - chr2R 6101945 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-555 530 chr2R 6129326 6129356 chr2R 6129404 6129434 12 78 4.0 2.0 3.0 3.0 108 chr2R 6129326 intron EcR - chr2R 6129380 intron EcR - chr2R 6129434 intron EcR - chr2R_12_6125001 chr2R_6125001 RAL-555 531 chr2R 6173556 6173569 chr2R 6173628 6173643 5 76 2.0 2.0 2.0 1.7 87 chr2R 6173556 intergenic Cyp6w1 + chr2R 6173600 intergenic Cyp6w1 + chr2R 6173643 intergenic Cyp6w1 + chr2R_5_6170001 chr2R_6170001 RAL-555 532 chr2R 6177944 6177980 chr2R 6178122 6178158 7 178 1.5 2.5 2.0 2.3 214 chr2R 6177944 intergenic not near genes chr2R 6178051 intergenic not near genes chr2R 6178158 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-555 533 chr2R 6194687 6194696 chr2R 6194770 6194779 5 83 2.5 4.0 3.2 1.2 92 chr2R 6194687 intron Ptr - chr2R 6194733 intron Ptr - chr2R 6194779 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-555 534 chr2R 6494530 6494551 chr2R 6499292 6499312 F-element 4 4761 3.0 2.0 2.5 1.1 4782 chr2R 6494530 intergenic not near genes chr2R 6496921 intergenic not near genes chr2R 6499312 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-555 535 chr2R 6579771 6579805 chr2R 6584857 6584892 flea 5 5087 0.0 0.5 0.2 4.2 5121 chr2R 6579771 intron jing + chr2R 6582332 intron jing + chr2R 6584892 intron jing + chr2R_5_6580001 chr2R_6580001 RAL-555 536 chr2R 6699607 6699616 chr2R 6699692 6699701 6 85 3.0 4.0 3.5 1.3 94 chr2R 6699607 intergenic Rab2 + chr2R 6699654 intergenic Rab2 + chr2R 6699701 intergenic Rab2 + chr2R_6_6695001 chr2R_6695001 RAL-555 537 chr2R 6706966 6706988 chr2R 6707227 6707249 4 261 3.5 2.5 3.0 1.0 283 chr2R 6706966 intron,intron CG3409 -,CG45092 - chr2R 6707108 intron,intron CG3409 -,CG45092 - chr2R 6707249 intron,intron,3` UTR CG3409 -,CG45092 -,mir-4975 - chr2R_4_6705001 chr2R_6705001 RAL-555 538 chr2R 6738855 6738876 chr2R 6738937 6738958 9 81 2.5 3.5 3.0 2.2 103 chr2R 6738855 intron l(2)01289 - chr2R 6738906 intron l(2)01289 - chr2R 6738958 intron l(2)01289 - chr2R_9_6735001 chr2R_6735001 RAL-555 539 chr2R 6846311 6846326 chr2R 6846388 6846403 4 77 1.0 5.0 3.0 1.0 92 chr2R 6846311 intergenic not near genes chr2R 6846357 intergenic not near genes chr2R 6846403 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-555 540 chr2R 6876223 6876251 chr2R 6876305 6876333 9 82 2.0 2.0 2.0 3.0 110 chr2R 6876223 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_9_6875001 chr2R_6875001 RAL-555 541 chr2R 6964287 6964316 chr2R 6964364 6964393 5 77 0.0 2.0 1.0 2.5 106 chr2R 6964287 intron,intron mim -,CheB42c - chr2R 6964340 intron,intron mim -,CheB42c - chr2R 6964393 intron,intron mim -,CheB42c - chr2R_5_6960001 chr2R_6960001 RAL-555 542 chr2R 6978648 6978671 chr2R 6978831 6978854 6 183 0.5 2.0 1.2 2.7 206 chr2R 6978648 intron vimar - chr2R 6978751 intron vimar - chr2R 6978854 intron vimar - chr2R_6_6975001 chr2R_6975001 RAL-555 543 chr2R 7091213 7091242 chr2R 7091295 7091324 8 82 2.5 1.5 2.0 2.7 111 chr2R 7091213 intron esn + chr2R 7091268 intron esn + chr2R 7091324 intron esn + chr2R_8_7090001 chr2R_7090001 RAL-555 544 chr2R 7139944 7139953 chr2R 7141436 7141441 hopper2 5 1491 1.5 7.0 4.2 1.0 1497 chr2R 7139944 intergenic not near genes chr2R 7140692 intergenic not near genes chr2R 7141441 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-555 545 chr2R 7153167 7153190 chr2R 7153253 7153276 5 86 1.0 2.0 1.5 2.0 109 chr2R 7153167 intron,intron pk +,Spn43Ab - chr2R 7153222 intron,intron pk +,Spn43Ab - chr2R 7153276 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-555 546 chr2R 7196567 7196597 chr2R 7201342 7201372 F-element 7 4775 4.0 3.5 3.8 1.5 4805 chr2R 7196567 intron pk + chr2R 7198970 intron pk + chr2R 7201372 intron pk + chr2R_7_7195001 chr2R_7195001 RAL-555 547 chr2R 7235818 7235851 chr2R 7240909 7240943 jockey 13 5092 3.0 1.5 2.2 4.1 5125 chr2R 7235818 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_13_7235001 chr2R_7235001 RAL-555 548 chr2R 7353389 7353418 chr2R 7353495 7353524 6 106 2.5 2.5 2.5 1.7 135 chr2R 7353389 intron Dscam1 - chr2R 7353456 intron Dscam1 - chr2R 7353524 intron Dscam1 - chr2R_6_7350001 chr2R_7350001 RAL-555 549 chr2R 7394622 7394653 chr2R 7394730 7394760 15 108 2.5 4.0 3.2 3.6 138 chr2R 7394622 intron CG1707 - chr2R 7394691 intron CG1707 - chr2R 7394760 intron CG1707 - chr2R_15_7390001 chr2R_7390001 RAL-555 550 chr2R 7418138 7418166 chr2R 7418217 7418245 8 79 2.5 4.0 3.2 1.9 107 chr2R 7418138 intergenic not near genes chr2R 7418192 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-555 551 chr2R 7434895 7434915 chr2R 7439196 7439216 Juan 7 4301 5.0 4.5 4.8 1.2 4321 chr2R 7434895 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439216 intergenic not near genes chr2R_7_7435001 chr2R_7435001 RAL-555 552 chr2R 7478585 7478611 chr2R 7478669 7478695 10 84 2.5 3.5 3.0 2.5 110 chr2R 7478585 intergenic wech - chr2R 7478640 intergenic wech - chr2R 7478695 intergenic wech - chr2R_10_7475001 chr2R_7475001 RAL-555 553 chr2R 7608406 7608431 chr2R 7613609 7613634 I-element 6 5203 2.5 3.0 2.8 1.6 5228 chr2R 7608406 intron CG1358 - chr2R 7611020 intron CG1358 - chr2R 7613634 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-555 554 chr2R 7869182 7869214 chr2R 7873967 7874000 Doc 13 4786 4.0 2.5 3.2 3.1 4818 chr2R 7869182 intron Dgk - chr2R 7871591 intron Dgk - chr2R 7874000 intron Dgk - chr2R_13_7870001 chr2R_7870001 RAL-555 555 chr2R 7897141 7897152 chr2R 7897230 7897241 4 88 0.0 4.5 2.2 1.2 100 chr2R 7897141 intron CG30377 + chr2R 7897191 intron CG30377 + chr2R 7897241 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-555 556 chr2R 7952178 7952304 chr2R 7952280 7952392 10 96 0.0 0.0 0.0 10.0 214 chr2R 7952178 intron CG14764 - chr2R 7952285 intron CG14764 - chr2R 7952392 intron CG14764 - chr2R_10_7950001 chr2R_7950001 RAL-555 557 chr2R 8015658 8015676 chr2R 8017674 8017699 5 2022 1.0 3.5 2.2 1.6 2041 chr2R 8015658 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017699 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-555 558 chr2R 8049734 8049750 chr2R 8054981 8054997 6 5248 8.0 23.5 15.8 0.4 5263 chr2R 8049734 intergenic not near genes chr2R 8052366 3` UTR CG12769 - chr2R 8054997 exon CG12769 - chr2R_6_8050001 chr2R_8050001 RAL-555 559 chr2R 8067063 8067095 chr2R 8067147 8067179 10 84 3.0 6.0 4.5 1.8 116 chr2R 8067063 intron CG17977 - chr2R 8067121 intron CG17977 - chr2R 8067179 exon CG17977 - chr2R_10_8065001 chr2R_8065001 RAL-555 560 chr2R 8076677 8076709 chr2R 8076757 8076789 20 80 3.0 1.5 2.2 6.2 112 chr2R 8076677 intron lig + chr2R 8076733 intron lig + chr2R 8076789 intron lig + chr2R_20_8075001 chr2R_8075001 RAL-555 561 chr2R 8089262 8089281 chr2R 8089347 8089367 9 86 2.0 4.0 3.0 2.2 105 chr2R 8089262 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089367 intergenic sut2 +,sut3 + chr2R_9_8085001 chr2R_8085001 RAL-555 562 chr2R 8151688 8151711 chr2R 8151766 8151789 8 78 1.5 0.0 0.8 4.4 101 chr2R 8151688 intron,intron Lpin -,kermit - chr2R 8151738 intron,intron Lpin -,kermit - chr2R 8151789 intron,intron Lpin -,kermit - chr2R_8_8150001 chr2R_8150001 RAL-555 563 chr2R 8236045 8236062 chr2R 8236126 8236142 4 80 3.0 2.0 2.5 1.1 97 chr2R 8236045 intergenic not near genes chr2R 8236094 intergenic not near genes chr2R 8236142 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-555 564 chr2R 8249562 8249598 chr2R 8249644 8249680 10 82 1.0 1.5 1.2 4.5 118 chr2R 8249562 5` UTR CG44439 - chr2R 8249621 intergenic CG44439 - chr2R 8249680 intergenic CG44439 - chr2R_10_8245001 chr2R_8245001 RAL-555 565 chr2R 8259573 8259595 chr2R 8259651 8259672 6 79 0.5 5.5 3.0 1.5 99 chr2R 8259573 exon CG30369 + chr2R 8259622 exon CG30369 + chr2R 8259672 3` UTR CG30369 + chr2R_6_8255001 chr2R_8255001 RAL-555 566 chr2R 8330861 8330893 chr2R 8331347 8331379 roo 6 486 0.5 1.5 1.0 3.0 518 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-555 567 chr2R 8348730 8348762 chr2R 8348822 8348851 11 92 1.0 0.0 0.5 7.3 121 chr2R 8348730 intron pdm3 + chr2R 8348790 intron pdm3 + chr2R 8348851 intron pdm3 + chr2R_11_8345001 chr2R_8345001 RAL-555 568 chr2R 8368186 8368222 chr2R 8368266 8368302 10 80 2.0 6.0 4.0 2.0 116 chr2R 8368186 intron pdm3 + chr2R 8368244 intron pdm3 + chr2R 8368302 intron pdm3 + chr2R_10_8365001 chr2R_8365001 RAL-555 569 chr2R 8398213 8398236 chr2R 8402994 8403017 Doc 9 4781 3.0 1.0 2.0 3.0 4804 chr2R 8398213 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403017 intron CG2121 - chr2R_9_8400001 chr2R_8400001 RAL-555 570 chr2R 8554126 8554136 chr2R 8554209 8554219 8 82 6.5 7.0 6.8 1.0 93 chr2R 8554126 intergenic not near genes chr2R 8554172 intergenic not near genes chr2R 8554219 intergenic not near genes chr2R_8_8550001 chr2R_8550001 RAL-555 571 chr2R 8635927 8635933 chr2R 8636005 8636011 4 78 0.0 4.0 2.0 1.3 84 chr2R 8635927 intergenic not near genes chr2R 8635969 intergenic not near genes chr2R 8636011 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-555 572 chr2R 8658234 8658262 chr2R 8658310 8658338 4 76 1.0 1.5 1.2 1.8 104 chr2R 8658234 intron ptc + chr2R 8658286 intron ptc + chr2R 8658338 intron ptc + chr2R_4_8655001 chr2R_8655001 RAL-555 573 chr2R 8714705 8714723 chr2R 8714791 8714810 7 87 0.0 5.0 2.5 2.0 105 chr2R 8714705 3` UTR PGRP-SC1b + chr2R 8714758 3` UTR PGRP-SC1b + chr2R 8714810 3` UTR PGRP-SC1b + chr2R_7_8710001 chr2R_8710001 RAL-555 574 chr2R 8722766 8722789 chr2R 8723007 8723029 pogo 7 240 3.0 5.0 4.0 1.4 263 chr2R 8722766 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723029 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-555 575 chr2R 8768893 8768906 chr2R 8769161 8769175 4 269 5.5 1.5 3.5 0.9 282 chr2R 8768893 intergenic CR44278 - chr2R 8769034 intergenic CR44278 - chr2R 8769175 intergenic CR44278 - chr2R_4_8765001 chr2R_8765001 RAL-555 576 chr2R 8777910 8777944 chr2R 8784101 8784134 diver 8 6191 2.5 3.0 2.8 2.1 6224 chr2R 8777910 intergenic not near genes chr2R 8781022 intergenic not near genes chr2R 8784134 intergenic not near genes chr2R_8_8780001 chr2R_8780001 RAL-555 577 chr2R 8849231 8849261 chr2R 8849309 8849339 4 78 3.0 3.5 3.2 1.0 108 chr2R 8849231 intron sns + chr2R 8849285 intron sns + chr2R 8849339 intron sns + chr2R_4_8845001 chr2R_8845001 RAL-555 578 chr2R 9047422 9047438 chr2R 9047517 9047533 7 95 1.5 3.0 2.2 2.2 111 chr2R 9047422 intron CG13743 - chr2R 9047478 intron CG13743 - chr2R 9047533 intron CG13743 - chr2R_7_9045001 chr2R_9045001 RAL-555 579 chr2R 9052708 9052737 chr2R 9052789 9052818 11 81 0.0 4.5 2.2 3.4 110 chr2R 9052708 intron CG13743 - chr2R 9052763 intron CG13743 - chr2R 9052818 intron CG13743 - chr2R_11_9050001 chr2R_9050001 RAL-555 580 chr2R 9212693 9212726 chr2R 9213179 9213211 roo 11 486 3.0 4.0 3.5 2.4 518 chr2R 9212693 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213211 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 RAL-555 581 chr2R 9230226 9230243 chr2R 9230306 9230323 7 80 3.0 2.5 2.8 1.8 97 chr2R 9230226 intron hig - chr2R 9230274 intron hig - chr2R 9230323 exon hig - chr2R_7_9230001 chr2R_9230001 RAL-555 582 chr2R 9368130 9368140 chr2R 9368205 9368216 4 74 1.5 0.0 0.8 2.2 86 chr2R 9368130 intron CG13954 - chr2R 9368173 intron CG13954 - chr2R 9368216 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-555 583 chr2R 9412074 9412092 chr2R 9412184 9412203 4 110 7.0 2.5 4.8 0.7 129 chr2R 9412074 intron wun - chr2R 9412138 intron wun - chr2R 9412203 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-555 584 chr2R 9480074 9480104 chr2R 9490605 9490635 roo 8 10531 3.5 0.5 2.0 2.7 10561 chr2R 9480074 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490635 intergenic not near genes chr2R_8_9485001 chr2R_9485001 RAL-555 585 chr2R 9510671 9510697 chr2R 9510787 9510813 9 116 1.0 3.5 2.2 2.8 142 chr2R 9510671 intron brp + chr2R 9510742 intron brp + chr2R 9510813 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-555 586 chr2R 9541626 9541647 chr2R 9541703 9541724 6 77 0.0 4.0 2.0 2.0 98 chr2R 9541626 intergenic brp +,CG1888 - chr2R 9541675 intergenic brp +,CG1888 - chr2R 9541724 intergenic brp +,CG1888 - chr2R_6_9540001 chr2R_9540001 RAL-555 587 chr2R 9561827 9561850 chr2R 9561915 9561938 7 88 0.0 1.5 0.8 3.9 111 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561938 3` UTR,intron CR45281 -,CG1809 + chr2R_7_9560001 chr2R_9560001 RAL-555 588 chr2R 9653263 9653289 chr2R 9653347 9653373 8 84 2.0 3.5 2.8 2.1 110 chr2R 9653263 intron Mmp2 - chr2R 9653318 intron Mmp2 - chr2R 9653373 intron Mmp2 - chr2R_8_9650001 chr2R_9650001 RAL-555 589 chr2R 9726611 9726640 chr2R 9734162 9734191 17.6 6 7551 4.0 2.5 3.2 1.4 7580 chr2R 9726611 intron sqa - chr2R 9730401 intron sqa - chr2R 9734191 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-555 590 chr2R 9770068 9770094 chr2R 9770162 9770188 4 93 0.0 4.5 2.2 1.2 120 chr2R 9770068 intron CG1688 - chr2R 9770128 intron CG1688 - chr2R 9770188 intron CG1688 - chr2R_4_9770001 chr2R_9770001 RAL-555 591 chr2R 9950304 9950327 chr2R 9950381 9950403 9 77 3.0 1.5 2.2 2.8 99 chr2R 9950304 intron Mef2 - chr2R 9950354 intron Mef2 - chr2R 9950403 intron Mef2 - chr2R_9_9950001 chr2R_9950001 RAL-555 592 chr2R 9966963 9966989 chr2R 9967064 9967090 7 101 2.0 2.5 2.2 2.2 127 chr2R 9966963 intergenic CG12133 + chr2R 9967026 intergenic CG12133 + chr2R 9967090 intergenic CG12133 + chr2R_7_9965001 chr2R_9965001 RAL-555 593 chr2R 10005850 10005875 chr2R 10007015 10007040 1360 12 1165 2.5 2.5 2.5 3.4 1190 chr2R 10005850 intron Pka-R2 - chr2R 10006445 intron Pka-R2 - chr2R 10007040 intron Pka-R2 - chr2R_12_10005001 chr2R_10005001 RAL-555 594 chr2R 10047820 10047844 chr2R 10047903 10047927 4 83 3.5 4.5 4.0 0.8 107 chr2R 10047820 intron oys - chr2R 10047874 intron oys - chr2R 10047927 intron oys - chr2R_4_10045001 chr2R_10045001 RAL-555 595 chr2R 10122741 10122751 chr2R 10122951 10122960 5 210 4.0 2.0 3.0 1.2 219 chr2R 10122741 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_5_10120001 chr2R_10120001 RAL-555 596 chr2R 10132204 10132221 chr2R 10132284 10132301 6 80 1.0 4.0 2.5 1.7 97 chr2R 10132204 intron gem + chr2R 10132252 intron gem + chr2R 10132301 intron gem + chr2R_6_10130001 chr2R_10130001 RAL-555 597 chr2R 10155861 10155884 chr2R 10155955 10155977 5 94 0.5 4.5 2.5 1.4 116 chr2R 10155861 intron KCNQ - chr2R 10155919 intron,3` UTR KCNQ -,mlt - chr2R 10155977 intron,3` UTR KCNQ -,mlt - chr2R_5_10155001 chr2R_10155001 RAL-555 598 chr2R 10176877 10176912 chr2R 10186044 10186079 roo 9 9167 4.0 1.5 2.8 2.4 9202 chr2R 10176877 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_9_10180001 chr2R_10180001 RAL-555 599 chr2R 10266502 10266526 chr2R 10266593 10266614 7 90 3.5 1.0 2.2 2.2 112 chr2R 10266502 intron CG12910 + chr2R 10266558 intron CG12910 + chr2R 10266614 intron CG12910 + chr2R_7_10265001 chr2R_10265001 RAL-555 600 chr2R 10313309 10313338 chr2R 10313403 10313432 6 94 0.5 3.5 2.0 2.0 123 chr2R 10313309 intergenic not near genes chr2R 10313370 intergenic not near genes chr2R 10313432 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-555 601 chr2R 10318516 10318546 chr2R 10318602 10318632 12 86 3.5 3.0 3.2 2.9 116 chr2R 10318516 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318632 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-555 602 chr2R 10370437 10370449 chr2R 10370612 10370624 7 175 0.5 0.0 0.2 5.8 187 chr2R 10370437 intron CG42732 - chr2R 10370530 intron CG42732 - chr2R 10370624 intron CG42732 - chr2R_7_10370001 chr2R_10370001 RAL-555 603 chr2R 10387977 10388003 chr2R 10388074 10388100 4 97 0.0 3.0 1.5 1.6 123 chr2R 10387977 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388100 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-555 604 chr2R 10417411 10417434 chr2R 10417538 10417558 5 125 13.5 11.5 12.5 0.4 147 chr2R 10417411 intergenic CG42732 - chr2R 10417484 intergenic CG42732 - chr2R 10417558 intergenic not near genes chr2R_5_10415001 chr2R_10415001 RAL-555 605 chr2R 10469023 10469055 chr2R 10469149 10469181 7 126 1.5 5.0 3.2 1.7 158 chr2R 10469023 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-555 606 chr2R 10551145 10551154 chr2R 10551265 10551272 5 120 0.0 0.0 0.0 5.0 127 chr2R 10551145 intergenic not near genes chr2R 10551208 intergenic not near genes chr2R 10551272 intergenic not near genes chr2R_5_10550001 chr2R_10550001 RAL-555 607 chr2R 10585574 10585584 chr2R 10594155 10594167 Tirant 6 8582 1.0 2.5 1.8 2.1 8593 chr2R 10585574 intron psq + chr2R 10589870 intron psq + chr2R 10594167 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-555 608 chr2R 10644058 10644080 chr2R 10644136 10644157 5 78 1.0 0.0 0.5 3.3 99 chr2R 10644058 intron Git - chr2R 10644108 intron Git - chr2R 10644157 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-555 609 chr2R 10658053 10658087 chr2R 10658145 10658179 14 92 1.5 0.5 1.0 7.0 126 chr2R 10658053 intergenic not near genes chr2R 10658116 intergenic not near genes chr2R 10658179 intergenic not near genes chr2R_14_10655001 chr2R_10655001 RAL-555 610 chr2R 10658933 10658945 chr2R 10659018 10659030 4 84 6.0 0.0 3.0 1.0 97 chr2R 10658933 intergenic not near genes chr2R 10658982 intergenic not near genes chr2R 10659030 intergenic not near genes chr2R_4_10655001 chr2R_10655001 RAL-555 611 chr2R 10686393 10686411 chr2R 10686470 10686488 7 77 2.0 3.5 2.8 1.8 95 chr2R 10686393 intron stan + chr2R 10686440 intron stan + chr2R 10686488 intron stan + chr2R_7_10685001 chr2R_10685001 RAL-555 612 chr2R 10790152 10790176 chr2R 10790240 10790264 6 88 1.0 5.0 3.0 1.5 112 chr2R 10790152 intron CG33144 - chr2R 10790208 intron CG33144 - chr2R 10790264 intron CG33144 - chr2R_6_10790001 chr2R_10790001 RAL-555 613 chr2R 10855313 10855335 chr2R 10855481 10855503 7 167 2.0 2.5 2.2 2.2 190 chr2R 10855313 intron CG30015 - chr2R 10855408 intron CG30015 - chr2R 10855503 intron CG30015 - chr2R_7_10855001 chr2R_10855001 RAL-555 614 chr2R 10863123 10863157 chr2R 10863206 10863240 8 83 2.0 4.5 3.2 1.9 117 chr2R 10863123 intron CG30015 - chr2R 10863182 intron CG30015 - chr2R 10863240 intron CG30015 - chr2R_8_10860001 chr2R_10860001 RAL-555 615 chr2R 10948024 10948051 chr2R 10955575 10955602 17.6 7 7551 0.0 3.0 1.5 2.8 7578 chr2R 10948024 intergenic not near genes chr2R 10951813 intergenic not near genes chr2R 10955602 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-555 616 chr2R 10959090 10959096 chr2R 10959169 10959175 4 79 3.5 2.5 3.0 1.0 85 chr2R 10959090 intergenic not near genes chr2R 10959132 intergenic not near genes chr2R 10959175 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-555 617 chr2R 10979656 10979687 chr2R 10980126 10980157 297 5 470 0.0 3.5 1.8 1.8 501 chr2R 10979656 intergenic not near genes chr2R 10979906 intergenic not near genes chr2R 10980157 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-555 618 chr2R 11009816 11009848 chr2R 11018990 11019016 roo 12 9173 4.5 1.0 2.8 3.2 9200 chr2R 11009816 intron luna - chr2R 11014416 intron luna - chr2R 11019016 intron luna - chr2R_12_11010001 chr2R_11010001 RAL-555 619 chr2R 11019883 11019900 chr2R 11024948 11024966 jockey 4 5065 4.0 7.0 5.5 0.6 5083 chr2R 11019883 intron luna - chr2R 11022424 intron luna - chr2R 11024966 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-555 620 chr2R 11093723 11093747 chr2R 11093878 11093901 7 155 1.5 4.0 2.8 1.8 178 chr2R 11093723 intron luna - chr2R 11093812 intron luna - chr2R 11093901 intron luna - chr2R_7_11090001 chr2R_11090001 RAL-555 621 chr2R 11158875 11158891 chr2R 11159044 11159060 5 169 2.5 3.0 2.8 1.3 185 chr2R 11158875 intron CG13229 - chr2R 11158968 intron CG13229 - chr2R 11159060 intron CG13229 - chr2R_5_11155001 chr2R_11155001 RAL-555 622 chr2R 11161100 11161134 chr2R 11161356 11161388 9 256 1.5 2.5 2.0 3.0 288 chr2R 11161100 intron,intron CG13229 -,shn + chr2R 11161244 intron,intron CG13229 -,shn + chr2R 11161388 intron,intron CG13229 -,shn + chr2R_9_11160001 chr2R_11160001 RAL-555 623 chr2R 11168065 11168096 chr2R 11168146 11168177 14 81 5.0 3.5 4.2 2.7 112 chr2R 11168065 intron,intron CG13229 -,shn + chr2R 11168121 intron,intron CG13229 -,shn + chr2R 11168177 intron,intron CG13229 -,shn + chr2R_14_11165001 chr2R_11165001 RAL-555 624 chr2R 11179273 11179293 chr2R 11179359 11179379 7 86 1.0 4.5 2.8 1.8 106 chr2R 11179273 intron shn + chr2R 11179326 intron shn + chr2R 11179379 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-555 625 chr2R 11207823 11207843 chr2R 11208015 11208028 BS 6 191 3.5 6.0 4.8 1.0 205 chr2R 11207823 intron shn + chr2R 11207926 intron shn + chr2R 11208028 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-555 626 chr2R 11249171 11249186 chr2R 11249297 11249312 8 126 5.5 0.5 3.0 2.0 141 chr2R 11249171 intergenic CG43112 + chr2R 11249242 intergenic CG43112 + chr2R 11249312 intergenic CG43112 + chr2R_8_11245001 chr2R_11245001 RAL-555 627 chr2R 11292968 11292994 chr2R 11293046 11293073 8 79 4.0 0.0 2.0 2.7 105 chr2R 11292968 exon,3` UTR dare -,CG30033 + chr2R 11293020 5` UTR,3` UTR dare -,CG30033 + chr2R 11293073 5` UTR,3` UTR dare -,CG30033 + chr2R_8_11290001 chr2R_11290001 RAL-555 628 chr2R 11297639 11297651 chr2R 11301960 11301972 flea 11 4321 4.0 1.0 2.5 3.1 4333 chr2R 11297639 intergenic CG42336 - chr2R 11299806 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_11_11295001 chr2R_11295001 RAL-555 629 chr2R 11344147 11344157 chr2R 11344243 11344253 4 96 0.0 2.5 1.2 1.8 106 chr2R 11344147 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344253 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-555 630 chr2R 11415516 11415549 chr2R 11418665 11418698 opus 8 3148 3.5 4.0 3.8 1.7 3182 chr2R 11415516 intron Drip - chr2R 11417107 intron Drip - chr2R 11418698 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-555 631 chr2R 11471127 11471150 chr2R 11471215 11471238 10 87 5.0 3.0 4.0 2.0 111 chr2R 11471127 intergenic not near genes chr2R 11471182 intergenic not near genes chr2R 11471238 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-555 632 chr2R 11472648 11472679 chr2R 11473844 11473876 pogo 16 1197 3.0 4.5 3.8 3.3 1228 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_16_11470001 chr2R_11470001 RAL-555 633 chr2R 11494600 11494619 chr2R 11494689 11494703 7 88 5.0 7.5 6.2 1.0 103 chr2R 11494600 intron inv + chr2R 11494652 intron inv + chr2R 11494703 intron inv + chr2R_7_11490001 chr2R_11490001 RAL-555 634 chr2R 11528814 11528832 chr2R 11529003 11529021 10 188 1.5 2.0 1.8 3.6 207 chr2R 11528814 intergenic not near genes chr2R 11528918 intergenic not near genes chr2R 11529021 intergenic not near genes chr2R_10_11525001 chr2R_11525001 RAL-555 635 chr2R 11555395 11555425 chr2R 11555730 11555760 6 335 2.0 1.5 1.8 2.1 365 chr2R 11555395 intergenic not near genes chr2R 11555578 intergenic not near genes chr2R 11555760 intergenic not near genes chr2R_6_11555001 chr2R_11555001 RAL-555 636 chr2R 11677872 11677880 chr2R 11677950 11677958 4 78 4.0 0.5 2.2 1.2 86 chr2R 11677872 intron,exon Roc2 -,Tret1-2 + chr2R 11677915 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677958 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-555 637 chr2R 11724175 11724188 chr2R 11724258 11724271 4 83 1.5 5.5 3.5 0.9 96 chr2R 11724175 intron pyr + chr2R 11724223 intron pyr + chr2R 11724271 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-555 638 chr2R 11945888 11945913 chr2R 11945965 11945990 12 77 3.0 3.5 3.2 2.9 102 chr2R 11945888 intron CG13188 + chr2R 11945939 intron CG13188 + chr2R 11945990 intron CG13188 + chr2R_12_11945001 chr2R_11945001 RAL-555 639 chr2R 12061065 12061084 chr2R 12061146 12061164 4 80 1.5 1.5 1.5 1.6 99 chr2R 12061065 intron Drep-3 + chr2R 12061114 intron Drep-3 + chr2R 12061164 intron Drep-3 + chr2R_4_12060001 chr2R_12060001 RAL-555 640 chr2R 12073395 12073429 chr2R 12073484 12073519 9 90 1.5 0.0 0.8 5.0 124 chr2R 12073395 intron CG8888 - chr2R 12073457 intron CG8888 - chr2R 12073519 intron CG8888 - chr2R_9_12070001 chr2R_12070001 RAL-555 641 chr2R 12096838 12096855 chr2R 12097290 12097307 5 452 1.5 6.5 4.0 1.0 469 chr2R 12096838 intron jeb - chr2R 12097072 intron jeb - chr2R 12097307 intron jeb - chr2R_5_12095001 chr2R_12095001 RAL-555 642 chr2R 12186004 12186037 chr2R 12186097 12186131 14 95 1.5 3.5 2.5 4.0 127 chr2R 12186004 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_14_12185001 chr2R_12185001 RAL-555 643 chr2R 12187472 12187508 chr2R 12190088 12190124 44 2616 85.5 66.0 75.8 0.6 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_44_12185001 chr2R_12185001 RAL-555 644 chr2R 12217578 12217601 chr2R 12217659 12217682 8 81 3.0 3.0 3.0 2.0 104 chr2R 12217578 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217682 intergenic not near genes chr2R_8_12215001 chr2R_12215001 RAL-555 645 chr2R 12417463 12417481 chr2R 12417541 12417558 6 79 3.5 4.0 3.8 1.2 95 chr2R 12417463 exon CG13157 + chr2R 12417510 exon CG13157 + chr2R 12417558 exon CG13157 + chr2R_6_12415001 chr2R_12415001 RAL-555 646 chr2R 12481142 12481166 chr2R 12482946 12482970 roo 6 1802 1.0 4.5 2.8 1.6 1828 chr2R 12481142 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482970 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-555 647 chr2R 12501694 12501725 chr2R 12503856 12503887 Rt1c 9 2162 1.0 2.5 1.8 3.2 2193 chr2R 12501694 intron fdl - chr2R 12502790 intron fdl - chr2R 12503887 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-555 648 chr2R 12504147 12504180 chr2R 12504224 12504257 12 77 3.0 2.0 2.5 3.4 110 chr2R 12504147 intron fdl - chr2R 12504202 intron fdl - chr2R 12504257 intron fdl - chr2R_12_12500001 chr2R_12500001 RAL-555 649 chr2R 12694759 12694796 chr2R 12695223 12695260 18 464 2.5 1.5 2.0 6.0 501 chr2R 12694759 intergenic not near genes chr2R 12695010 intergenic not near genes chr2R 12695260 intergenic not near genes chr2R_18_12695001 chr2R_12695001 RAL-555 650 chr2R 12702315 12702333 chr2R 12702396 12702414 6 80 5.5 0.0 2.8 1.6 99 chr2R 12702315 intergenic not near genes chr2R 12702364 intergenic not near genes chr2R 12702414 intergenic not near genes chr2R_6_12700001 chr2R_12700001 RAL-555 651 chr2R 12707522 12707546 chr2R 12715888 12715912 roo 4 8366 0.0 3.5 1.8 1.4 8390 chr2R 12707522 intron CG42663 + chr2R 12711717 intron CG42663 + chr2R 12715912 intron CG42663 + chr2R_4_12710001 chr2R_12710001 RAL-555 652 chr2R 12777806 12777819 chr2R 12777915 12777928 5 109 0.0 0.0 0.0 5.0 122 chr2R 12777806 5` UTR CR45266 + chr2R 12777867 5` UTR CR45266 + chr2R 12777928 5` UTR CR45266 + chr2R_5_12775001 chr2R_12775001 RAL-555 653 chr2R 12789294 12789322 chr2R 12797657 12797684 roo 6 8363 2.0 2.5 2.2 1.9 8390 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793489 intron,intron sca +,CR45137 - chr2R 12797684 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-555 654 chr2R 12808323 12808343 chr2R 12808418 12808438 11 94 2.5 2.5 2.5 3.1 115 chr2R 12808323 intergenic not near genes chr2R 12808380 intergenic not near genes chr2R 12808438 intergenic not near genes chr2R_11_12805001 chr2R_12805001 RAL-555 655 chr2R 12819454 12819478 chr2R 12824527 12824551 jockey 4 5072 2.0 6.0 4.0 0.8 5097 chr2R 12819454 intergenic not near genes chr2R 12822002 intergenic not near genes chr2R 12824551 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-555 656 chr2R 12897407 12897422 chr2R 12897512 12897527 4 105 2.0 3.0 2.5 1.1 120 chr2R 12897407 intron vg + chr2R 12897467 intron vg + chr2R 12897527 intron vg + chr2R_4_12895001 chr2R_12895001 RAL-555 657 chr2R 13063833 13063851 chr2R 13064089 13064107 10 256 4.5 0.0 2.2 3.1 274 chr2R 13063833 intron Drl-2 - chr2R 13063970 intron Drl-2 - chr2R 13064107 intron Drl-2 - chr2R_10_13060001 chr2R_13060001 RAL-555 658 chr2R 13136833 13136860 chr2R 13141631 13141658 Doc 8 4798 3.5 2.5 3.0 2.0 4825 chr2R 13136833 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141658 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-555 659 chr2R 13167428 13167459 chr2R 13167522 13167553 11 94 1.5 0.0 0.8 6.1 125 chr2R 13167428 intron GLaz - chr2R 13167490 intron GLaz - chr2R 13167553 intron GLaz - chr2R_11_13165001 chr2R_13165001 RAL-555 660 chr2R 13218308 13218401 chr2R 13218391 13218478 6 80 0.0 0.0 0.0 6.0 170 chr2R 13218308 intron CG4630 - chr2R 13218393 intron CG4630 - chr2R 13218478 intron CG4630 - chr2R_6_13215001 chr2R_13215001 RAL-555 661 chr2R 13348990 13349014 chr2R 13349071 13349095 5 80 1.0 0.0 0.5 3.3 105 chr2R 13348990 intron CR44206 - chr2R 13349042 intron CR44206 - chr2R 13349095 intron CR44206 - chr2R_5_13345001 chr2R_13345001 RAL-555 662 chr2R 13364708 13364732 chr2R 13364794 13364818 6 86 0.5 2.5 1.5 2.4 110 chr2R 13364708 intergenic not near genes chr2R 13364763 intergenic not near genes chr2R 13364818 intergenic not near genes chr2R_6_13360001 chr2R_13360001 RAL-555 663 chr2R 13431494 13431519 chr2R 13431573 13431598 10 79 1.5 5.0 3.2 2.4 104 chr2R 13431494 intron CG42321 - chr2R 13431546 intron CG42321 - chr2R 13431598 intron CG42321 - chr2R_10_13430001 chr2R_13430001 RAL-555 664 chr2R 13432934 13432959 chr2R 13433010 13433035 4 76 3.5 2.5 3.0 1.0 101 chr2R 13432934 intron CG42321 - chr2R 13432984 intron CG42321 - chr2R 13433035 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-555 665 chr2R 13439111 13439228 chr2R 13439226 13439304 6 124 0.0 0.0 0.0 6.0 193 chr2R 13439111 intergenic CG42321 -,cnn - chr2R 13439208 intergenic cnn -,CG42321 - chr2R 13439304 intergenic cnn -,CG42321 - chr2R_6_13435001 chr2R_13435001 RAL-555 666 chr2R 13464440 13464477 chr2R 13464631 13464668 12 191 2.0 1.0 1.5 4.8 228 chr2R 13464440 intron arr - chr2R 13464554 intron arr - chr2R 13464668 intron arr - chr2R_12_13460001 chr2R_13460001 RAL-555 667 chr2R 13566258 13566283 chr2R 13566338 13566363 9 80 4.5 0.5 2.5 2.6 105 chr2R 13566258 intergenic not near genes chr2R 13566310 intergenic not near genes chr2R 13566363 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-555 668 chr2R 13580497 13580532 chr2R 13580847 13580882 jockey 11 350 1.0 3.0 2.0 3.7 385 chr2R 13580497 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580882 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-555 669 chr2R 13619223 13619244 chr2R 13619301 13619322 7 78 3.5 2.0 2.8 1.8 99 chr2R 13619223 intergenic not near genes chr2R 13619272 intergenic not near genes chr2R 13619322 intergenic not near genes chr2R_7_13615001 chr2R_13615001 RAL-555 670 chr2R 13627794 13627807 chr2R 13627924 13627938 5 131 3.5 4.5 4.0 1.0 144 chr2R 13627794 intron fas + chr2R 13627866 intron fas + chr2R 13627938 intron fas + chr2R_5_13625001 chr2R_13625001 RAL-555 671 chr2R 13692321 13692351 chr2R 13692403 13692435 7 84 3.5 2.0 2.8 1.8 114 chr2R 13692321 intron,intron fas +,CG6220 - chr2R 13692378 intron,intron fas +,CG6220 - chr2R 13692435 intron,intron fas +,CG6220 - chr2R_7_13690001 chr2R_13690001 RAL-555 672 chr2R 13721208 13721224 chr2R 13721290 13721306 4 82 5.5 7.5 6.5 0.5 98 chr2R 13721208 intron fas + chr2R 13721257 intron fas + chr2R 13721306 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-555 673 chr2R 13768986 13769010 chr2R 13769082 13769107 6 98 2.5 1.0 1.8 2.1 121 chr2R 13768986 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-555 674 chr2R 13790330 13790342 chr2R 13790406 13790418 8 75 1.5 0.0 0.8 4.4 88 chr2R 13790330 intergenic not near genes chr2R 13790374 intergenic not near genes chr2R 13790418 intergenic not near genes chr2R_8_13790001 chr2R_13790001 RAL-555 675 chr2R 13793148 13793161 chr2R 13793224 13793235 6 75 3.5 1.0 2.2 1.9 87 chr2R 13793148 intergenic not near genes chr2R 13793192 intergenic not near genes chr2R 13793235 intergenic not near genes chr2R_6_13790001 chr2R_13790001 RAL-555 676 chr2R 13861439 13861457 chr2R 13861518 13861533 4 79 1.5 3.0 2.2 1.2 94 chr2R 13861439 intron CG16935 - chr2R 13861486 intron CG16935 - chr2R 13861533 intron CG16935 - chr2R_4_13860001 chr2R_13860001 RAL-555 677 chr2R 13905602 13905631 chr2R 13907584 13907613 Rt1a 7 1982 4.0 3.5 3.8 1.5 2011 chr2R 13905602 intron shot - chr2R 13906608 intron shot - chr2R 13907613 intron shot - chr2R_7_13905001 chr2R_13905001 RAL-555 678 chr2R 13925870 13925882 chr2R 13926024 13926036 5 154 3.0 0.5 1.8 1.8 166 chr2R 13925870 intron shot - chr2R 13925953 intron shot - chr2R 13926036 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-555 679 chr2R 14018157 14018194 chr2R 14018241 14018278 13 84 2.5 3.5 3.0 3.2 121 chr2R 14018157 intron mam + chr2R 14018218 intron mam + chr2R 14018278 intron mam + chr2R_13_14015001 chr2R_14015001 RAL-555 680 chr2R 14081346 14081381 chr2R 14081444 14081479 5 98 2.0 1.0 1.5 2.0 133 chr2R 14081346 intron Prosap - chr2R 14081412 intron Prosap - chr2R 14081479 intron Prosap - chr2R_5_14080001 chr2R_14080001 RAL-555 681 chr2R 14093433 14093444 chr2R 14109584 14109595 5 16151 4.5 2.0 3.2 1.2 16162 chr2R 14093433 intron Prosap - chr2R 14101514 intron Prosap - chr2R 14109595 intron Prosap - chr2R_5_14100001 chr2R_14100001 RAL-555 682 chr2R 14205345 14205358 chr2R 14205469 14205482 5 124 1.0 4.5 2.8 1.3 137 chr2R 14205345 intron Sox15 - chr2R 14205414 intron Sox15 - chr2R 14205482 intron Sox15 - chr2R_5_14205001 chr2R_14205001 RAL-555 683 chr2R 14327753 14327786 chr2R 14327848 14327878 11 94 7.0 2.0 4.5 2.0 125 chr2R 14327753 exon Shroom + chr2R 14327816 exon Shroom + chr2R 14327878 exon Shroom + chr2R_11_14325001 chr2R_14325001 RAL-555 684 chr2R 14357562 14357567 chr2R 14357652 14357657 5 90 5.0 1.5 3.2 1.2 95 chr2R 14357562 intergenic CG8617 -,Arc1 - chr2R 14357610 intergenic Arc1 -,CG8617 - chr2R 14357657 intergenic Arc1 -,CG8617 - chr2R_5_14355001 chr2R_14355001 RAL-555 685 chr2R 14393866 14393897 chr2R 14393951 14393982 9 84 2.5 4.0 3.2 2.1 116 chr2R 14393866 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393982 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-555 686 chr2R 14394228 14394245 chr2R 14399017 14399034 Doc 4 4789 4.5 4.0 4.2 0.8 4806 chr2R 14394228 intergenic not near genes chr2R 14396631 intergenic not near genes chr2R 14399034 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-555 687 chr2R 14408669 14408689 chr2R 14408872 14408893 4 203 2.0 0.0 1.0 2.0 224 chr2R 14408669 5` UTR CR44369 + chr2R 14408781 5` UTR CR44369 + chr2R 14408893 5` UTR CR44369 + chr2R_4_14405001 chr2R_14405001 RAL-555 688 chr2R 14429978 14430005 chr2R 14430081 14430108 9 103 3.0 2.5 2.8 2.4 130 chr2R 14429978 intron phyl - chr2R 14430043 intron phyl - chr2R 14430108 intron phyl - chr2R_9_14430001 chr2R_14430001 RAL-555 689 chr2R 14467306 14467323 chr2R 14476464 14476481 roo 10 9157 1.5 3.5 2.5 2.9 9175 chr2R 14467306 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476481 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-555 690 chr2R 14539150 14539184 chr2R 14539379 14539413 9 229 4.0 3.0 3.5 2.0 263 chr2R 14539150 intron ttv + chr2R 14539282 intron ttv + chr2R 14539413 intron ttv + chr2R_9_14535001 chr2R_14535001 RAL-555 691 chr2R 14565558 14565590 chr2R 14565635 14565666 13 77 3.5 3.0 3.2 3.1 108 chr2R 14565558 intron ttv + chr2R 14565612 intron ttv + chr2R 14565666 intron ttv + chr2R_13_14565001 chr2R_14565001 RAL-555 692 chr2R 14653908 14653916 chr2R 14654008 14654016 5 100 4.5 5.0 4.8 0.9 108 chr2R 14653908 intergenic not near genes chr2R 14653962 intergenic not near genes chr2R 14654016 intergenic not near genes chr2R_5_14650001 chr2R_14650001 RAL-555 693 chr2R 14799865 14799897 chr2R 14799941 14799973 7 76 1.0 5.5 3.2 1.7 108 chr2R 14799865 intron kn - chr2R 14799919 intron kn - chr2R 14799973 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-555 694 chr2R 14889206 14889237 chr2R 14897814 14897845 Max-element 6 8608 4.0 0.0 2.0 2.0 8639 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-555 695 chr2R 14911703 14911727 chr2R 14911826 14911850 9 123 1.5 2.5 2.0 3.0 147 chr2R 14911703 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911850 intron CG10249 - chr2R_9_14910001 chr2R_14910001 RAL-555 696 chr2R 14922145 14922172 chr2R 14922220 14922247 10 75 2.5 1.5 2.0 3.3 102 chr2R 14922145 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_10_14920001 chr2R_14920001 RAL-555 697 chr2R 14934464 14934471 chr2R 14934552 14934559 5 88 2.5 0.0 1.2 2.3 95 chr2R 14934464 intron CG10253 - chr2R 14934512 intron CG10253 - chr2R 14934559 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-555 698 chr2R 15015457 15015486 chr2R 15022881 15022910 mdg1 8 7424 2.5 4.0 3.2 1.9 7453 chr2R 15015457 intron hbs + chr2R 15019184 intron hbs + chr2R 15022910 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-555 699 chr2R 15084977 15085008 chr2R 15092026 15092057 297 7 7049 1.5 1.5 1.5 2.8 7080 chr2R 15084977 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092057 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-555 700 chr2R 15119319 15119350 chr2R 15127800 15127831 Tirant 9 8480 4.0 4.0 4.0 1.8 8512 chr2R 15119319 intron chn + chr2R 15123575 intron chn + chr2R 15127831 intron chn + chr2R_9_15120001 chr2R_15120001 RAL-555 701 chr2R 15196095 15196126 chr2R 15196191 15196222 13 96 1.5 2.5 2.0 4.3 127 chr2R 15196095 intergenic not near genes chr2R 15196158 intergenic not near genes chr2R 15196222 intergenic not near genes chr2R_13_15195001 chr2R_15195001 RAL-555 702 chr2R 15261856 15261888 chr2R 15267259 15267291 24 5403 30.5 35.0 32.8 0.7 5435 chr2R 15261856 exon ItgalphaPS4 + chr2R 15264574 exon Trpm - chr2R 15267291 exon Trpm - chr2R_24_15260001 chr2R_15260001 RAL-555 703 chr2R 15330205 15330238 chr2R 15330339 15330372 8 134 1.5 4.0 2.8 2.1 167 chr2R 15330205 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330372 intergenic CR44371 - chr2R_8_15330001 chr2R_15330001 RAL-555 704 chr2R 15656031 15656066 chr2R 15656122 15656157 5 91 0.0 0.5 0.2 4.2 126 chr2R 15656031 intron CG42524 + chr2R 15656094 intron CG42524 + chr2R 15656157 intron CG42524 + chr2R_5_15655001 chr2R_15655001 RAL-555 705 chr2R 15818807 15818833 chr2R 15819010 15819036 6 203 1.5 1.0 1.2 2.7 229 chr2R 15818807 intron tun + chr2R 15818922 intron tun + chr2R 15819036 intron tun + chr2R_6_15815001 chr2R_15815001 RAL-555 706 chr2R 15869337 15869369 chr2R 15869417 15869448 7 80 0.5 2.5 1.5 2.8 111 chr2R 15869337 intergenic sli -,Rif1 - chr2R 15869392 intergenic sli -,Rif1 - chr2R 15869448 intergenic sli -,Rif1 - chr2R_7_15865001 chr2R_15865001 RAL-555 707 chr2R 16243596 16243621 chr2R 16243707 16243732 9 111 5.5 1.5 3.5 2.0 136 chr2R 16243596 3` UTR CngA - chr2R 16243664 3` UTR CngA - chr2R 16243732 3` UTR CngA - chr2R_9_16240001 chr2R_16240001 RAL-555 708 chr2R 16255006 16255029 chr2R 16255082 16255105 17 76 6.0 1.0 3.5 3.8 99 chr2R 16255006 intron CngA - chr2R 16255056 intron CngA - chr2R 16255105 intron CngA - chr2R_17_16255001 chr2R_16255001 RAL-555 709 chr2R 16480763 16480781 chr2R 16480839 16480857 6 76 1.5 5.0 3.2 1.4 94 chr2R 16480763 intergenic not near genes chr2R 16480810 intergenic not near genes chr2R 16480857 intergenic not near genes chr2R_6_16480001 chr2R_16480001 RAL-555 710 chr2R 16489268 16489300 chr2R 16489352 16489384 6 84 2.5 3.5 3.0 1.5 116 chr2R 16489268 intergenic CG33459 + chr2R 16489326 intergenic CG33459 + chr2R 16489384 intergenic CG33459 + chr2R_6_16485001 chr2R_16485001 RAL-555 711 chr2R 16518050 16518067 chr2R 16518123 16518143 6 76 1.5 2.5 2.0 2.0 93 chr2R 16518050 intron Sema-2a + chr2R 16518096 intron Sema-2a + chr2R 16518143 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-555 712 chr2R 16539644 16539665 chr2R 16544853 16544873 copia 6 5209 3.0 2.0 2.5 1.7 5229 chr2R 16539644 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544873 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-555 713 chr2R 16547016 16547030 chr2R 16547096 16547110 7 80 0.0 0.0 0.0 7.0 94 chr2R 16547016 intergenic not near genes chr2R 16547063 intergenic not near genes chr2R 16547110 intergenic not near genes chr2R_7_16545001 chr2R_16545001 RAL-555 714 chr2R 16571871 16571901 chr2R 16571965 16571996 10 94 5.0 3.0 4.0 2.0 125 chr2R 16571871 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16571996 intergenic CG4927 + chr2R_10_16570001 chr2R_16570001 RAL-555 715 chr2R 16617059 16617081 chr2R 16617138 16617160 11 79 3.0 2.0 2.5 3.1 101 chr2R 16617059 intron CG5065 + chr2R 16617110 intron CG5065 + chr2R 16617160 intron CG5065 + chr2R_11_16615001 chr2R_16615001 RAL-555 716 chr2R 16636903 16636925 chr2R 16637034 16637056 4 131 1.0 2.5 1.8 1.4 153 chr2R 16636903 intron Alk - chr2R 16636980 intron Alk - chr2R 16637056 intron Alk - chr2R_4_16635001 chr2R_16635001 RAL-555 717 chr2R 16708995 16709019 chr2R 16709089 16709115 9 96 3.0 2.5 2.8 2.4 120 chr2R 16708995 intron CG30463 - chr2R 16709055 intron CG30463 - chr2R 16709115 intron CG30463 - chr2R_9_16705001 chr2R_16705001 RAL-555 718 chr2R 16880040 16880064 chr2R 16880117 16880141 4 76 0.5 2.0 1.2 1.8 101 chr2R 16880040 intron CG8910 - chr2R 16880090 intron CG8910 - chr2R 16880141 intron CG8910 - chr2R_4_16880001 chr2R_16880001 RAL-555 719 chr2R 16904187 16904201 chr2R 16904473 16904493 4 290 2.0 3.0 2.5 1.1 306 chr2R 16904187 intergenic not near genes chr2R 16904340 intergenic not near genes chr2R 16904493 intergenic not near genes chr2R_4_16900001 chr2R_16900001 RAL-555 720 chr2R 16975204 16975221 chr2R 16975281 16975298 6 77 2.0 1.5 1.8 2.1 94 chr2R 16975204 intron Cbp53E + chr2R 16975251 intron Cbp53E + chr2R 16975298 intron Cbp53E + chr2R_6_16975001 chr2R_16975001 RAL-555 721 chr2R 17147245 17147258 chr2R 17152276 17152289 jockey 6 5031 5.0 4.5 4.8 1.0 5044 chr2R 17147245 intergenic not near genes chr2R 17149767 intergenic not near genes chr2R 17152289 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-555 722 chr2R 17161362 17161364 chr2R 17161569 17161571 4 207 1.5 0.0 0.8 2.2 209 chr2R 17161362 intergenic not near genes chr2R 17161466 intergenic not near genes chr2R 17161571 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-555 723 chr2R 17176363 17176385 chr2R 17182553 17182575 diver 11 6190 5.5 4.0 4.8 1.9 6212 chr2R 17176363 intergenic not near genes chr2R 17179469 intergenic not near genes chr2R 17182575 intergenic not near genes chr2R_11_17175001 chr2R_17175001 RAL-555 724 chr2R 17236513 17236541 chr2R 17241717 17241743 copia 5 5204 3.5 4.5 4.0 1.0 5230 chr2R 17236513 intron mbl + chr2R 17239128 intron mbl + chr2R 17241743 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-555 725 chr2R 17470339 17470354 chr2R 17470423 17470438 6 84 0.0 1.0 0.5 4.0 99 chr2R 17470339 intron qkr54B + chr2R 17470388 intron qkr54B + chr2R 17470438 intron qkr54B + chr2R_6_17470001 chr2R_17470001 RAL-555 726 chr2R 17485916 17485937 chr2R 17490678 17490699 F-element 9 4762 4.0 0.0 2.0 3.0 4783 chr2R 17485916 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488308 intron NT5E-2 + chr2R 17490699 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-555 727 chr2R 17766854 17766876 chr2R 17766935 17766958 7 82 1.5 2.0 1.8 2.5 104 chr2R 17766854 intron OstDelta - chr2R 17766906 5` UTR OstDelta - chr2R 17766958 5` UTR,5` UTR OstDelta -,CR44416 + chr2R_7_17765001 chr2R_17765001 RAL-555 728 chr2R 17772478 17772500 chr2R 17772607 17772631 8 131 2.5 5.0 3.8 1.7 153 chr2R 17772478 exon CG6362 - chr2R 17772554 intergenic CG6362 - chr2R 17772631 intergenic CG6362 - chr2R_8_17770001 chr2R_17770001 RAL-555 729 chr2R 17782366 17782385 chr2R 17783569 17783588 pogo 5 1203 3.5 3.5 3.5 1.1 1222 chr2R 17782366 intergenic CG33981 -,fab1 - chr2R 17782977 intergenic not near genes chr2R 17783588 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-555 730 chr2R 17784029 17784054 chr2R 17784268 17784295 pogo 5 240 0.5 2.0 1.2 2.3 266 chr2R 17784029 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-555 731 chr2R 17846779 17846810 chr2R 17846863 17846894 12 84 1.5 3.5 2.5 3.4 115 chr2R 17846779 intron,5` UTR olf186-F +,olf186-M + chr2R 17846836 intron,5` UTR olf186-F +,olf186-M + chr2R 17846894 intron,5` UTR olf186-F +,olf186-M + chr2R_12_17845001 chr2R_17845001 RAL-555 732 chr2R 17918160 17918196 chr2R 17918237 17918273 8 77 2.0 1.5 1.8 2.9 113 chr2R 17918160 intron Elk + chr2R 17918216 intron Elk + chr2R 17918273 intron Elk + chr2R_8_17915001 chr2R_17915001 RAL-555 733 chr2R 18045669 18045693 chr2R 18046021 18046045 jockey 9 352 3.0 2.0 2.5 2.6 376 chr2R 18045669 intergenic not near genes chr2R 18045857 intergenic not near genes chr2R 18046045 intergenic CG5767 - chr2R_9_18045001 chr2R_18045001 RAL-555 734 chr2R 18075978 18075996 chr2R 18076072 18076090 8 94 3.5 5.5 4.5 1.5 112 chr2R 18075978 intron CG34386 + chr2R 18076034 intron CG34386 + chr2R 18076090 intron CG34386 + chr2R_8_18075001 chr2R_18075001 RAL-555 735 chr2R 18111684 18111715 chr2R 18115552 18115580 F-element 8 3868 2.5 3.0 2.8 2.1 3896 chr2R 18111684 intergenic not near genes chr2R 18113632 intergenic not near genes chr2R 18115580 intergenic not near genes chr2R_8_18110001 chr2R_18110001 RAL-555 736 chr2R 18187459 18187483 chr2R 18187923 18187947 11 464 3.5 1.5 2.5 3.1 488 chr2R 18187459 intron CG33958 - chr2R 18187703 intron CG33958 - chr2R 18187947 intron,exon CG33958 -,CG14499 + chr2R_11_18185001 chr2R_18185001 RAL-555 737 chr2R 18207315 18207336 chr2R 18207403 18207420 4 87 2.5 2.0 2.2 1.2 105 chr2R 18207315 intergenic CG30114 + chr2R 18207368 intergenic CG30114 + chr2R 18207420 intergenic CG30114 + chr2R_4_18205001 chr2R_18205001 RAL-555 738 chr2R 18221199 18221203 chr2R 18221286 18221289 4 87 0.0 4.5 2.2 1.2 90 chr2R 18221199 intergenic not near genes chr2R 18221244 intergenic not near genes chr2R 18221289 intergenic not near genes chr2R_4_18220001 chr2R_18220001 RAL-555 739 chr2R 18358389 18358423 chr2R 18372601 18372635 roo 9 14212 1.0 2.0 1.5 3.6 14246 chr2R 18358389 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372635 intergenic not near genes chr2R_9_18365001 chr2R_18365001 RAL-555 740 chr2R 18402500 18402534 chr2R 18402588 18402619 6 87 3.5 5.5 4.5 1.1 119 chr2R 18402500 intergenic not near genes chr2R 18402560 intergenic not near genes chr2R 18402619 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-555 741 chr2R 18408295 18408314 chr2R 18408412 18408435 10 120 4.0 5.0 4.5 1.8 140 chr2R 18408295 exon GstE8 + chr2R 18408365 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_10_18405001 chr2R_18405001 RAL-555 742 chr2R 18526683 18526693 chr2R 18526883 18526893 4 200 1.5 0.0 0.8 2.2 210 chr2R 18526683 intergenic CG43066 + chr2R 18526788 intergenic CG43066 + chr2R 18526893 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-555 743 chr2R 18575808 18575831 chr2R 18581996 18582019 3S18 6 6188 2.0 5.0 3.5 1.3 6211 chr2R 18575808 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-555 744 chr2R 18590865 18590898 chr2R 18600017 18600050 roo 8 9151 3.5 5.5 4.5 1.5 9185 chr2R 18590865 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-555 745 chr2R 18662359 18662373 chr2R 18662442 18662456 6 83 3.5 0.0 1.8 2.1 97 chr2R 18662359 intergenic not near genes chr2R 18662408 intergenic not near genes chr2R 18662456 intergenic not near genes chr2R_6_18660001 chr2R_18660001 RAL-555 746 chr2R 18692901 18692920 chr2R 18692988 18693007 5 87 4.5 2.0 3.2 1.2 106 chr2R 18692901 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693007 intron Sik3 + chr2R_5_18690001 chr2R_18690001 RAL-555 747 chr2R 18738206 18738238 chr2R 18738282 18738314 9 76 1.5 2.5 2.0 3.0 108 chr2R 18738206 intron Hs3st-A + chr2R 18738260 intron Hs3st-A + chr2R 18738314 intron Hs3st-A + chr2R_9_18735001 chr2R_18735001 RAL-555 748 chr2R 18808069 18808085 chr2R 18808158 18808174 5 89 0.0 0.5 0.2 4.2 105 chr2R 18808069 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808174 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-555 749 chr2R 18827715 18827723 chr2R 18827795 18827803 5 80 3.0 0.5 1.8 1.8 88 chr2R 18827715 intron CG15097 - chr2R 18827759 intron CG15097 - chr2R 18827803 intron CG15097 - chr2R_5_18825001 chr2R_18825001 RAL-555 750 chr2R 18880356 18880383 chr2R 18880441 18880468 9 85 2.0 4.5 3.2 2.1 112 chr2R 18880356 intron sano + chr2R 18880412 intron sano + chr2R 18880468 intron sano + chr2R_9_18880001 chr2R_18880001 RAL-555 751 chr2R 18989020 18989043 chr2R 18989097 18989121 7 78 3.5 1.0 2.2 2.2 101 chr2R 18989020 intron tn + chr2R 18989070 intron tn + chr2R 18989121 intron tn + chr2R_7_18985001 chr2R_18985001 RAL-555 752 chr2R 19015436 19015464 chr2R 19015523 19015552 4 88 2.5 3.0 2.8 1.1 116 chr2R 19015436 intergenic not near genes chr2R 19015494 intergenic not near genes chr2R 19015552 intergenic not near genes chr2R_4_19015001 chr2R_19015001 RAL-555 753 chr2R 19026050 19026061 chr2R 19026151 19026162 5 101 3.0 3.5 3.2 1.2 112 chr2R 19026050 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026162 intron 5-HT1B - chr2R_5_19025001 chr2R_19025001 RAL-555 754 chr2R 19040726 19040760 chr2R 19040806 19040840 9 80 2.0 2.0 2.0 3.0 114 chr2R 19040726 intergenic not near genes chr2R 19040783 intergenic not near genes chr2R 19040840 intergenic not near genes chr2R_9_19040001 chr2R_19040001 RAL-555 755 chr2R 19053661 19053675 chr2R 19053741 19053755 5 80 2.0 6.5 4.2 1.0 94 chr2R 19053661 intergenic not near genes chr2R 19053708 intergenic not near genes chr2R 19053755 intergenic not near genes chr2R_5_19050001 chr2R_19050001 RAL-555 756 chr2R 19067723 19067755 chr2R 19067799 19067831 4 76 2.5 1.5 2.0 1.3 108 chr2R 19067723 intron 5-HT1A + chr2R 19067777 intron 5-HT1A + chr2R 19067831 intron 5-HT1A + chr2R_4_19065001 chr2R_19065001 RAL-555 757 chr2R 19168745 19168753 chr2R 19168826 19168832 4 80 5.0 2.0 3.5 0.9 87 chr2R 19168745 intron CG10737 + chr2R 19168788 intron CG10737 + chr2R 19168832 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-555 758 chr2R 19183346 19183370 chr2R 19183422 19183446 14 76 3.5 3.5 3.5 3.1 100 chr2R 19183346 intron hppy + chr2R 19183396 intron hppy + chr2R 19183446 intron hppy + chr2R_14_19180001 chr2R_19180001 RAL-555 759 chr2R 19202263 19202295 chr2R 19202393 19202425 9 130 3.5 1.5 2.5 2.6 162 chr2R 19202263 intron hppy + chr2R 19202344 intron hppy + chr2R 19202425 intron hppy + chr2R_9_19200001 chr2R_19200001 RAL-555 760 chr2R 19300967 19300995 chr2R 19301049 19301077 13 83 2.0 2.5 2.2 4.1 110 chr2R 19300967 intron Tab2 + chr2R 19301022 intron Tab2 + chr2R 19301077 intron Tab2 + chr2R_13_19300001 chr2R_19300001 RAL-555 761 chr2R 19352345 19352375 chr2R 19352424 19352454 4 79 0.5 2.0 1.2 1.8 109 chr2R 19352345 intron Rgk1 - chr2R 19352400 intron Rgk1 - chr2R 19352454 intron Rgk1 - chr2R_4_19350001 chr2R_19350001 RAL-555 762 chr2R 19528839 19528864 chr2R 19528928 19528953 11 89 2.0 1.5 1.8 3.9 114 chr2R 19528839 3` UTR sm - chr2R 19528896 3` UTR sm - chr2R 19528953 3` UTR sm - chr2R_11_19525001 chr2R_19525001 RAL-555 763 chr2R 19536465 19536499 chr2R 19536547 19536581 10 82 3.0 3.5 3.2 2.4 116 chr2R 19536465 intron sm - chr2R 19536523 intron sm - chr2R 19536581 intron sm - chr2R_10_19535001 chr2R_19535001 RAL-555 764 chr2R 19554484 19554514 chr2R 19555726 19555756 9 1242 2.0 2.5 2.2 2.8 1272 chr2R 19554484 intron sm - chr2R 19555120 intron sm - chr2R 19555756 intron sm - chr2R_9_19555001 chr2R_19555001 RAL-555 765 chr2R 19589995 19590025 chr2R 19590078 19590108 8 83 5.5 1.5 3.5 1.8 113 chr2R 19589995 intron sm - chr2R 19590052 intron sm - chr2R 19590108 intron sm - chr2R_8_19590001 chr2R_19590001 RAL-555 766 chr2R 19776597 19776627 chr2R 19779920 19779950 jockey 11 3323 3.0 5.0 4.0 2.2 3353 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-555 767 chr2R 19914851 19914878 chr2R 19922263 19922290 mdg1 5 7412 1.0 3.0 2.0 1.7 7439 chr2R 19914851 intergenic not near genes chr2R 19918570 intergenic not near genes chr2R 19922290 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-555 768 chr2R 19957429 19957464 chr2R 19962631 19962666 copia 6 5202 2.0 1.5 1.8 2.1 5237 chr2R 19957429 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962666 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-555 769 chr2R 20069244 20069269 chr2R 20071872 20071899 opus 7 2629 2.5 2.0 2.2 2.2 2655 chr2R 20069244 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071899 intergenic not near genes chr2R_7_20070001 chr2R_20070001 RAL-555 770 chr2R 20080601 20080620 chr2R 20080678 20080697 9 77 0.0 4.5 2.2 2.8 96 chr2R 20080601 intergenic not near genes chr2R 20080649 intergenic not near genes chr2R 20080697 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-555 771 chr2R 20172629 20172658 chr2R 20172945 20172973 8 316 2.5 4.0 3.2 1.9 344 chr2R 20172629 intergenic not near genes chr2R 20172801 intergenic not near genes chr2R 20172973 intergenic not near genes chr2R_8_20170001 chr2R_20170001 RAL-555 772 chr2R 20196756 20196773 chr2R 20196862 20196882 7 108 2.0 0.0 1.0 3.5 126 chr2R 20196756 intergenic not near genes chr2R 20196819 intergenic not near genes chr2R 20196882 intergenic not near genes chr2R_7_20195001 chr2R_20195001 RAL-555 773 chr2R 20218767 20218793 chr2R 20218850 20218876 5 83 1.5 1.5 1.5 2.0 109 chr2R 20218767 intergenic not near genes chr2R 20218822 intergenic not near genes chr2R 20218876 intergenic not near genes chr2R_5_20215001 chr2R_20215001 RAL-555 774 chr2R 20334865 20334876 chr2R 20334943 20334953 6 78 4.0 8.5 6.2 0.8 88 chr2R 20334865 intergenic not near genes chr2R 20334909 intergenic not near genes chr2R 20334953 intergenic not near genes chr2R_6_20330001 chr2R_20330001 RAL-555 775 chr2R 20449239 20449254 chr2R 20449314 20449330 11 76 4.0 7.5 5.8 1.6 91 chr2R 20449239 intron CG12484 + chr2R 20449284 intron CG12484 + chr2R 20449330 intron CG12484 + chr2R_11_20445001 chr2R_20445001 RAL-555 776 chr2R 20483919 20483941 chr2R 20484292 20484314 6 372 2.0 6.5 4.2 1.2 395 chr2R 20483919 intergenic not near genes chr2R 20484116 intergenic not near genes chr2R 20484314 intergenic not near genes chr2R_6_20480001 chr2R_20480001 RAL-555 777 chr2R 20523037 20523067 chr2R 20523148 20523178 15 111 4.0 4.0 4.0 3.0 141 chr2R 20523037 intergenic not near genes chr2R 20523108 intergenic not near genes chr2R 20523178 intergenic not near genes chr2R_15_20520001 chr2R_20520001 RAL-555 778 chr2R 20590073 20590109 chr2R 20590154 20590187 7 79 0.0 1.0 0.5 4.7 114 chr2R 20590073 intron bl + chr2R 20590130 intron bl + chr2R 20590187 intron bl + chr2R_7_20590001 chr2R_20590001 RAL-555 779 chr2R 20592580 20592602 chr2R 20592658 20592680 7 78 2.5 0.5 1.5 2.8 100 chr2R 20592580 intron bl + chr2R 20592630 intron bl + chr2R 20592680 intron bl + chr2R_7_20590001 chr2R_20590001 RAL-555 780 chr2R 20601718 20601755 chr2R 20601803 20601840 19 85 0.0 4.0 2.0 6.3 122 chr2R 20601718 intron bl + chr2R 20601779 intron bl + chr2R 20601840 intron bl + chr2R_19_20600001 chr2R_20600001 RAL-555 781 chr2R 20706648 20706673 chr2R 20706827 20706856 8 182 3.0 3.0 3.0 2.0 208 chr2R 20706648 intron dpr + chr2R 20706752 intron dpr + chr2R 20706856 intron dpr + chr2R_8_20705001 chr2R_20705001 RAL-555 782 chr2R 20783311 20783332 chr2R 20788083 20788103 F-element 8 4772 5.0 5.0 5.0 1.3 4792 chr2R 20783311 intergenic not near genes chr2R 20785707 intergenic not near genes chr2R 20788103 intergenic CG43666 - chr2R_8_20785001 chr2R_20785001 RAL-555 783 chr2R 20838696 20838721 chr2R 20838942 20838966 12 246 3.0 2.5 2.8 3.2 270 chr2R 20838696 intergenic CR44667 + chr2R 20838831 intergenic CR44667 + chr2R 20838966 intergenic CR44667 + chr2R_12_20835001 chr2R_20835001 RAL-555 784 chr2R 20962908 20962937 chr2R 20963006 20963035 15 98 3.5 3.5 3.5 3.3 127 chr2R 20962908 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963035 intergenic not near genes chr2R_15_20960001 chr2R_20960001 RAL-555 785 chr2R 21032328 21032346 chr2R 21032456 21032473 7 128 5.0 4.0 4.5 1.3 145 chr2R 21032328 intergenic not near genes chr2R 21032400 intergenic not near genes chr2R 21032473 intergenic not near genes chr2R_7_21030001 chr2R_21030001 RAL-555 786 chr2R 21103539 21103554 chr2R 21103619 21103633 7 80 2.5 0.5 1.5 2.8 94 chr2R 21103539 intron ktub + chr2R 21103586 intron ktub + chr2R 21103633 intron ktub + chr2R_7_21100001 chr2R_21100001 RAL-555 787 chr2R 21151130 21151135 chr2R 21153763 21153767 opus 4 2632 0.0 0.5 0.2 3.3 2637 chr2R 21151130 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153767 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-555 788 chr2R 21182922 21182942 chr2R 21183148 21183168 7 226 1.0 1.0 1.0 3.5 246 chr2R 21182922 intergenic Pu +,tud + chr2R 21183045 intergenic tud +,Pu + chr2R 21183168 intergenic tud + chr2R_7_21180001 chr2R_21180001 RAL-555 789 chr2R 21188216 21188234 chr2R 21188297 21188315 8 81 6.5 2.0 4.2 1.5 99 chr2R 21188216 exon tud + chr2R 21188266 intron tud + chr2R 21188315 intron tud + chr2R_8_21185001 chr2R_21185001 RAL-555 790 chr2R 21251819 21251847 chr2R 21252046 21252074 6 227 2.0 0.5 1.2 2.7 255 chr2R 21251819 intergenic not near genes chr2R 21251946 intergenic not near genes chr2R 21252074 intergenic not near genes chr2R_6_21250001 chr2R_21250001 RAL-555 791 chr2R 21273241 21273261 chr2R 21273369 21273390 5 129 5.0 0.5 2.8 1.3 149 chr2R 21273241 intron Rgk3 + chr2R 21273316 intron Rgk3 + chr2R 21273390 intron Rgk3 + chr2R_5_21270001 chr2R_21270001 RAL-555 792 chr2R 21366526 21366543 chr2R 21366631 21366648 9 105 3.0 2.5 2.8 2.4 122 chr2R 21366526 intron cv-2 - chr2R 21366587 intron cv-2 - chr2R 21366648 intron cv-2 - chr2R_9_21365001 chr2R_21365001 RAL-555 793 chr2R 21418535 21418567 chr2R 21418611 21418644 8 77 1.5 1.5 1.5 3.2 109 chr2R 21418535 intron Sdc - chr2R 21418590 intron Sdc - chr2R 21418644 intron Sdc - chr2R_8_21415001 chr2R_21415001 RAL-555 794 chr2R 21453163 21453193 chr2R 21453270 21453300 8 107 23.0 22.5 22.8 0.3 137 chr2R 21453163 intron Sdc - chr2R 21453232 intron Sdc - chr2R 21453300 intron Sdc - chr2R_8_21450001 chr2R_21450001 RAL-555 795 chr2R 21461461 21461490 chr2R 21461567 21461596 8 106 0.5 0.0 0.2 6.7 135 chr2R 21461461 intron Sdc - chr2R 21461528 intron Sdc - chr2R 21461596 intron Sdc - chr2R_8_21460001 chr2R_21460001 RAL-555 796 chr2R 21467527 21467548 chr2R 21467614 21467635 6 87 1.0 0.0 0.5 4.0 108 chr2R 21467527 intron Sdc - chr2R 21467581 intron Sdc - chr2R 21467635 intron Sdc - chr2R_6_21465001 chr2R_21465001 RAL-555 797 chr2R 21505770 21505794 chr2R 21505851 21505875 7 81 5.0 3.0 4.0 1.4 105 chr2R 21505770 intron MESK2 + chr2R 21505822 intron MESK2 + chr2R 21505875 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-555 798 chr2R 21546803 21546819 chr2R 21546880 21546900 5 80 1.0 1.5 1.2 2.3 97 chr2R 21546803 intron Egfr + chr2R 21546852 intron Egfr + chr2R 21546900 intron Egfr + chr2R_5_21545001 chr2R_21545001 RAL-555 799 chr2R 21565630 21565650 chr2R 21572170 21572190 11 6540 35.0 19.5 27.2 0.4 6560 chr2R 21565630 intron CG10440 - chr2R 21568910 intron CG10440 - chr2R 21572190 intron CG10440 - chr2R_11_21565001 chr2R_21565001 RAL-555 800 chr2R 21585230 21585245 chr2R 21585309 21585324 6 79 2.5 5.5 4.0 1.2 94 chr2R 21585230 3` UTR CG30222 + chr2R 21585277 3` UTR CG30222 + chr2R 21585324 3` UTR CG30222 + chr2R_6_21585001 chr2R_21585001 RAL-555 801 chr2R 21601194 21601211 chr2R 21601283 21601300 4 88 2.0 6.5 4.2 0.8 106 chr2R 21601194 intergenic not near genes chr2R 21601247 intergenic not near genes chr2R 21601300 intergenic not near genes chr2R_4_21600001 chr2R_21600001 RAL-555 802 chr2R 21605922 21605943 chr2R 21606006 21606027 9 84 4.5 4.5 4.5 1.6 105 chr2R 21605922 3` UTR CG10433 - chr2R 21605974 3` UTR CG10433 - chr2R 21606027 3` UTR CG10433 - chr2R_9_21605001 chr2R_21605001 RAL-555 803 chr2R 21647962 21647992 chr2R 21648049 21648080 8 87 4.5 2.0 3.2 1.9 118 chr2R 21647962 intron CG10082 + chr2R 21648021 intron CG10082 + chr2R 21648080 intron CG10082 + chr2R_8_21645001 chr2R_21645001 RAL-555 804 chr2R 21660877 21660902 chr2R 21660970 21660995 7 93 6.0 2.5 4.2 1.3 118 chr2R 21660877 intergenic pirk - chr2R 21660936 intergenic pirk - chr2R 21660995 3` UTR pirk - chr2R_7_21660001 chr2R_21660001 RAL-555 805 chr2R 21700157 21700185 chr2R 21700242 21700271 11 86 2.0 0.5 1.2 5.0 114 chr2R 21700157 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_11_21700001 chr2R_21700001 RAL-555 806 chr2R 21708222 21708242 chr2R 21709883 21709903 6 1661 10.0 7.5 8.8 0.6 1681 chr2R 21708222 intron HmgD + chr2R 21709062 intron,3` UTR HmgD +,CR44749 - chr2R 21709903 intron,3` UTR HmgD +,CG30403 - chr2R_6_21705001 chr2R_21705001 RAL-555 807 chr2R 21708164 21708194 chr2R 21709966 21709996 9 1802 7.0 15.5 11.2 0.7 1832 chr2R 21708164 intron HmgD + chr2R 21709080 intron,3` UTR HmgD +,CR44749 - chr2R 21709996 intron,3` UTR HmgD +,CG30403 - chr2R_9_21705001 chr2R_21705001 RAL-555 808 chr2R 21721583 21721587 chr2R 21721671 21721675 4 88 5.0 0.0 2.5 1.1 92 chr2R 21721583 intron LBR + chr2R 21721629 intron LBR + chr2R 21721675 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-555 809 chr2R 21730878 21730897 chr2R 21730983 21731004 11 106 4.0 2.5 3.2 2.6 126 chr2R 21730878 intergenic not near genes chr2R 21730941 intergenic not near genes chr2R 21731004 intergenic not near genes chr2R_11_21730001 chr2R_21730001 RAL-555 810 chr2R 21738275 21738307 chr2R 21747435 21747467 roo 7 9159 2.0 0.5 1.2 3.2 9192 chr2R 21738275 intergenic not near genes chr2R 21742871 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-555 811 chr2R 21753088 21753111 chr2R 21753571 21753596 roo 10 485 5.0 3.0 4.0 2.0 508 chr2R 21753088 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753596 intergenic not near genes chr2R_10_21750001 chr2R_21750001 RAL-555 812 chr2R 21785250 21785284 chr2R 21785627 21785660 14 377 2.0 3.0 2.5 4.0 410 chr2R 21785250 intergenic not near genes chr2R 21785455 intergenic not near genes chr2R 21785660 intergenic not near genes chr2R_14_21785001 chr2R_21785001 RAL-555 813 chr2R 21857348 21857371 chr2R 21857439 21857462 11 91 4.0 2.0 3.0 2.8 114 chr2R 21857348 intergenic not near genes chr2R 21857405 intergenic not near genes chr2R 21857462 intergenic not near genes chr2R_11_21855001 chr2R_21855001 RAL-555 814 chr2R 21870957 21870969 chr2R 21871036 21871046 5 78 0.5 3.5 2.0 1.7 89 chr2R 21870957 intergenic not near genes chr2R 21871002 intergenic not near genes chr2R 21871046 intergenic not near genes chr2R_5_21870001 chr2R_21870001 RAL-555 815 chr2R 21886130 21886163 chr2R 21886209 21886242 10 79 4.0 0.0 2.0 3.3 112 chr2R 21886130 intron Fili + chr2R 21886186 intron Fili + chr2R 21886242 intron Fili + chr2R_10_21885001 chr2R_21885001 RAL-555 816 chr2R 21906271 21906302 chr2R 21906372 21906403 12 101 4.0 4.5 4.2 2.3 132 chr2R 21906271 intron Fili + chr2R 21906337 intron Fili + chr2R 21906403 intron Fili + chr2R_12_21905001 chr2R_21905001 RAL-555 817 chr2R 22069705 22069736 chr2R 22069788 22069817 6 82 1.5 0.5 1.0 3.0 112 chr2R 22069705 3` UTR Snp + chr2R 22069761 3` UTR CG11475 - chr2R 22069817 exon CG11475 - chr2R_6_22065001 chr2R_22065001 RAL-555 818 chr2R 22072685 22072716 chr2R 22072770 22072801 10 85 2.0 4.5 3.2 2.4 116 chr2R 22072685 intron CG11474 - chr2R 22072743 intron CG11474 - chr2R 22072801 exon CG11474 - chr2R_10_22070001 chr2R_22070001 RAL-555 819 chr2R 22095600 22095618 chr2R 22095680 22095698 5 80 1.5 0.5 1.0 2.5 98 chr2R 22095600 intron CG11073 - chr2R 22095649 intron CG11073 - chr2R 22095698 intron CG11073 - chr2R_5_22095001 chr2R_22095001 RAL-555 820 chr2R 22124307 22124330 chr2R 22124396 22124419 9 89 3.5 1.5 2.5 2.6 112 chr2R 22124307 3` UTR mei-S332 + chr2R 22124363 3` UTR mei-S332 + chr2R 22124419 intergenic mei-S332 +,GM130 - chr2R_9_22120001 chr2R_22120001 RAL-555 821 chr2R 22149762 22149790 chr2R 22150352 22150381 5 591 2.5 0.0 1.2 2.3 619 chr2R 22149762 intron a + chr2R 22150072 intron a + chr2R 22150381 intron a + chr2R_5_22150001 chr2R_22150001 RAL-555 822 chr2R 22182918 22182936 chr2R 22183002 22183020 7 84 1.0 1.5 1.2 3.2 102 chr2R 22182918 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182969 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183020 intergenic MED16 +,CG11170 -,CG11275 + chr2R_7_22180001 chr2R_22180001 RAL-555 823 chr2R 22185674 22185695 chr2R 22185772 22185794 4 99 2.0 0.0 1.0 2.0 120 chr2R 22185674 3` UTR MED16 + chr2R 22185734 3` UTR MED16 + chr2R 22185794 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-555 824 chr2R 22297711 22297735 chr2R 22297787 22297811 4 76 0.0 2.5 1.2 1.8 100 chr2R 22297711 intergenic not near genes chr2R 22297761 intergenic wdp - chr2R 22297811 intergenic wdp - chr2R_4_22295001 chr2R_22295001 RAL-555 825 chr2R 22349693 22349724 chr2R 22351473 22351507 jockey 6 1783 2.5 3.0 2.8 1.6 1814 chr2R 22349693 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-555 826 chr2R 22360380 22360395 chr2R 22360813 22360827 jockey 6 433 5.0 2.0 3.5 1.3 447 chr2R 22360380 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-555 827 chr2R 22460383 22460403 chr2R 22460462 22460482 6 79 3.5 3.5 3.5 1.3 99 chr2R 22460383 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460482 intron CG10384 + chr2R_6_22460001 chr2R_22460001 RAL-555 828 chr2R 22503884 22503890 chr2R 22503979 22503985 4 94 0.0 2.5 1.2 1.8 101 chr2R 22503884 intron px - chr2R 22503934 intron px - chr2R 22503985 intron px - chr2R_4_22500001 chr2R_22500001 RAL-555 829 chr2R 22525770 22525786 chr2R 22529329 22529345 jockey 5 3559 3.5 2.5 3.0 1.2 3575 chr2R 22525770 intron px - chr2R 22527558 intron px - chr2R 22529345 intron px - chr2R_5_22525001 chr2R_22525001 RAL-555 830 chr2R 22623459 22623485 chr2R 22623598 22623625 7 140 1.0 4.5 2.8 1.8 166 chr2R 22623459 intron CG33143 + chr2R 22623542 intron CG33143 + chr2R 22623625 intron CG33143 + chr2R_7_22620001 chr2R_22620001 RAL-555 831 chr2R 22666594 22666619 chr2R 22666674 22666699 11 80 4.0 2.0 3.0 2.8 105 chr2R 22666594 3` UTR,intron CR45269 -,CR42868 + chr2R 22666646 5` UTR CR42868 + chr2R 22666699 5` UTR CR42868 + chr2R_11_22665001 chr2R_22665001 RAL-555 832 chr2R 22691751 22691772 chr2R 22691853 22691874 4 102 2.5 1.5 2.0 1.3 123 chr2R 22691751 5` UTR CR44764 + chr2R 22691812 5` UTR CR44764 + chr2R 22691874 5` UTR CR44764 + chr2R_4_22690001 chr2R_22690001 RAL-555 833 chr2R 22723239 22723266 chr2R 22723313 22723342 9 76 2.0 4.0 3.0 2.2 103 chr2R 22723239 intron jbug - chr2R 22723290 intron jbug - chr2R 22723342 intron jbug - chr2R_9_22720001 chr2R_22720001 RAL-555 834 chr2R 22729460 22729468 chr2R 22729668 22729676 INE-1 4 208 2.0 0.0 1.0 2.0 216 chr2R 22729460 intron jbug - chr2R 22729568 intron jbug - chr2R 22729676 intron jbug - chr2R_4_22725001 chr2R_22725001 RAL-555 835 chr2R 22756551 22756585 chr2R 22756628 22756662 15 77 3.0 4.5 3.8 3.1 111 chr2R 22756551 intron,intron CG42260 -,CR30267 + chr2R 22756606 intron,intron CG42260 -,CR30267 + chr2R 22756662 intron,intron CG42260 -,CR30267 + chr2R_15_22755001 chr2R_22755001 RAL-555 836 chr2R 22843028 22843050 chr2R 22844988 22845012 flea 9 1962 2.5 5.5 4.0 1.8 1984 chr2R 22843028 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845012 intergenic not near genes chr2R_9_22840001 chr2R_22840001 RAL-555 837 chr2R 22925349 22925373 chr2R 22925445 22925469 4 96 4.0 2.0 3.0 1.0 120 chr2R 22925349 5` UTR CG42678 + chr2R 22925409 5` UTR CG42678 + chr2R 22925469 5` UTR CG42678 + chr2R_4_22925001 chr2R_22925001 RAL-555 838 chr2R 22950415 22950427 chr2R 22950504 22950516 4 88 8.5 5.5 7.0 0.5 101 chr2R 22950415 intergenic not near genes chr2R 22950466 intergenic not near genes chr2R 22950516 intergenic not near genes chr2R_4_22950001 chr2R_22950001 RAL-555 839 chr2R 23007515 23007530 chr2R 23007592 23007607 5 78 4.0 1.0 2.5 1.4 92 chr2R 23007515 intron twi + chr2R 23007561 intron twi + chr2R 23007607 intron twi + chr2R_5_23005001 chr2R_23005001 RAL-555 840 chr2R 23009556 23009567 chr2R 23009632 23009643 5 76 7.0 2.0 4.5 0.9 87 chr2R 23009556 intron twi + chr2R 23009600 intron twi + chr2R 23009643 intron twi + chr2R_5_23005001 chr2R_23005001 RAL-555 841 chr2R 23029612 23029632 chr2R 23029689 23029709 5 77 3.0 3.5 3.2 1.2 97 chr2R 23029612 intron,intron twi +,CG42741 - chr2R 23029660 intron,intron twi +,CG42741 - chr2R 23029709 intron,intron twi +,CG42741 - chr2R_5_23025001 chr2R_23025001 RAL-555 842 chr2R 23052655 23052687 chr2R 23052729 23052763 13 75 5.0 4.0 4.5 2.4 108 chr2R 23052655 intergenic not near genes chr2R 23052709 intergenic not near genes chr2R 23052763 intergenic not near genes chr2R_13_23050001 chr2R_23050001 RAL-555 843 chr2R 23054002 23054031 chr2R 23054078 23054109 11 78 2.5 4.0 3.2 2.6 107 chr2R 23054002 intergenic not near genes chr2R 23054056 intergenic not near genes chr2R 23054109 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-555 844 chr2R 23074847 23074874 chr2R 23075036 23075063 7 189 8.0 15.0 11.5 0.6 216 chr2R 23074847 5` UTR CG3085 + chr2R 23074955 intron CG3085 + chr2R 23075063 intron CG3085 + chr2R_7_23070001 chr2R_23070001 RAL-555 845 chr2R 23117843 23117872 chr2R 23118318 23118347 9 475 2.5 1.5 2.0 3.0 504 chr2R 23117843 intergenic not near genes chr2R 23118095 intergenic not near genes chr2R 23118347 intergenic not near genes chr2R_9_23115001 chr2R_23115001 RAL-555 846 chr2R 23133450 23133471 chr2R 23133529 23133550 11 79 0.0 2.0 1.0 5.5 100 chr2R 23133450 intergenic not near genes chr2R 23133500 intergenic not near genes chr2R 23133550 intergenic not near genes chr2R_11_23130001 chr2R_23130001 RAL-555 847 chr2R 23134842 23134849 chr2R 23134925 23134930 4 82 2.5 6.5 4.5 0.7 88 chr2R 23134842 intergenic not near genes chr2R 23134886 intergenic not near genes chr2R 23134930 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-555 848 chr2R 23156297 23156328 chr2R 23156429 23156457 13 131 2.0 4.0 3.0 3.2 160 chr2R 23156297 intron CG9899 + chr2R 23156377 intron CG9899 + chr2R 23156457 intron CG9899 + chr2R_13_23155001 chr2R_23155001 RAL-555 849 chr2R 23178075 23178103 chr2R 23178227 23178255 8 152 2.5 5.0 3.8 1.7 180 chr2R 23178075 intron CG34371 - chr2R 23178165 intron CG34371 - chr2R 23178255 intron CG34371 - chr2R_8_23175001 chr2R_23175001 RAL-555 850 chr2R 23185273 23185294 chr2R 23185359 23185380 6 86 0.0 2.5 1.2 2.7 107 chr2R 23185273 intron,3` UTR CG34371 -,CG13539 + chr2R 23185326 intron CG34371 - chr2R 23185380 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-555 851 chr2R 23188558 23188582 chr2R 23188636 23188660 5 78 2.0 2.0 2.0 1.7 102 chr2R 23188558 intron CG34371 - chr2R 23188609 intron CG34371 - chr2R 23188660 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-555 852 chr2R 23189935 23189948 chr2R 23190028 23190041 6 93 2.5 6.5 4.5 1.1 106 chr2R 23189935 intron CG34371 - chr2R 23189988 intron CG34371 - chr2R 23190041 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-555 853 chr2R 23219012 23219024 chr2R 23219251 23219262 4 239 2.0 0.0 1.0 2.0 250 chr2R 23219012 intergenic not near genes chr2R 23219137 intergenic not near genes chr2R 23219262 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-555 854 chr2R 23409784 23409817 chr2R 23409878 23409911 7 94 3.0 3.5 3.2 1.7 127 chr2R 23409784 intergenic not near genes chr2R 23409848 intergenic not near genes chr2R 23409911 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-555 855 chr2R 23423738 23423773 chr2R 23423896 23423930 6 158 0.5 3.0 1.8 2.1 192 chr2R 23423738 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423930 intron CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-555 856 chr2R 23470276 23470310 chr2R 23470357 23470391 16 80 3.5 2.5 3.0 4.0 115 chr2R 23470276 intron,3` UTR CG43795 +,Or59b - chr2R 23470334 intron,3` UTR CG43795 +,Or59b - chr2R 23470391 intron,3` UTR CG43795 +,Or59b - chr2R_16_23470001 chr2R_23470001 RAL-555 857 chr2R 23529574 23529599 chr2R 23537150 23537175 412 9 7576 5.0 4.5 4.8 1.6 7601 chr2R 23529574 intron bw - chr2R 23533374 intron bw - chr2R 23537175 exon bw - chr2R_9_23530001 chr2R_23530001 RAL-555 858 chr2R 23607039 23607184 chr2R 23607120 23607277 15 82 5.5 3.5 4.5 2.7 238 chr2R 23607039 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607277 intron CG17664 - chr2R_15_23605001 chr2R_23605001 RAL-555 859 chr2R 23744770 23744794 chr2R 23744849 23744873 11 78 2.5 3.5 3.0 2.8 103 chr2R 23744770 intron egl - chr2R 23744822 intron egl - chr2R 23744873 intron egl - chr2R_11_23740001 chr2R_23740001 RAL-555 860 chr2R 23802290 23802311 chr2R 23802391 23802414 9 102 4.0 3.5 3.8 1.9 124 chr2R 23802290 3` UTR CG30177 + chr2R 23802352 3` UTR CG30177 + chr2R 23802414 3` UTR CG30177 + chr2R_9_23800001 chr2R_23800001 RAL-555 861 chr2R 23819932 23819940 chr2R 23820022 23820030 5 90 4.0 4.5 4.2 1.0 98 chr2R 23819932 intergenic CG5549 + chr2R 23819981 intergenic CG5549 + chr2R 23820030 intergenic CG5549 + chr2R_5_23815001 chr2R_23815001 RAL-555 862 chr2R 23914305 23914331 chr2R 23921929 23921955 412 9 7624 2.5 3.5 3.0 2.2 7650 chr2R 23914305 exon kcc + chr2R 23918130 intron kcc + chr2R 23921955 intron kcc + chr2R_9_23915001 chr2R_23915001 RAL-555 863 chr2R 23986513 23986547 chr2R 23986593 23986627 10 80 2.5 2.0 2.2 3.1 114 chr2R 23986513 intron Phm - chr2R 23986570 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_10_23985001 chr2R_23985001 RAL-555 864 chr2R 24008409 24008440 chr2R 24008495 24008526 22 86 4.0 3.5 3.8 4.6 117 chr2R 24008409 intron Unc-89 - chr2R 24008468 intron Unc-89 - chr2R 24008526 intron Unc-89 - chr2R_22_24005001 chr2R_24005001 RAL-555 865 chr2R 24031382 24031410 chr2R 24031466 24031494 13 84 6.5 6.5 6.5 1.7 112 chr2R 24031382 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_13_24030001 chr2R_24030001 RAL-555 866 chr2R 24077931 24077959 chr2R 24078005 24078035 12 76 3.5 6.0 4.8 2.1 104 chr2R 24077931 3` UTR Mlp60A + chr2R 24077983 3` UTR Mlp60A + chr2R 24078035 3` UTR Mlp60A + chr2R_12_24075001 chr2R_24075001 RAL-555 867 chr2R 24147066 24147096 chr2R 24154644 24154674 412 11 7578 5.5 3.5 4.5 2.0 7608 chr2R 24147066 intron Dat + chr2R 24150870 intron Dat + chr2R 24154674 intron Dat + chr2R_11_24150001 chr2R_24150001 RAL-555 868 chr2R 24177235 24177253 chr2R 24184719 24184738 412 7 7485 5.0 2.5 3.8 1.5 7503 chr2R 24177235 3` UTR Nop60B + chr2R 24180986 intron Nop60B + chr2R 24184738 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-555 869 chr2R 24228399 24228423 chr2R 24228475 24228501 4 78 3.0 0.0 1.5 1.6 102 chr2R 24228399 intron CG30419 - chr2R 24228450 intron CG30419 - chr2R 24228501 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-555 870 chr2R 24278321 24278360 chr2R 24278403 24278436 9 81 0.0 3.5 1.8 3.2 115 chr2R 24278321 intron nvy + chr2R 24278378 intron nvy + chr2R 24278436 intron nvy + chr2R_9_24275001 chr2R_24275001 RAL-555 871 chr2R 24353426 24353459 chr2R 24361788 24361821 roo 4 8362 3.0 0.5 1.8 1.4 8395 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-555 872 chr2R 24430719 24430934 chr2R 24430853 24431021 9 93 0.0 0.0 0.0 9.0 302 chr2R 24430719 intergenic CG15873 - chr2R 24430870 intergenic CG15873 -,Pgam5-2 - chr2R 24431021 intergenic CG15873 -,Pgam5-2 - chr2R_9_24430001 chr2R_24430001 RAL-555 873 chr2R 24481454 24481488 chr2R 24481535 24481569 10 80 3.0 2.5 2.8 2.6 115 chr2R 24481454 intron CG13579 + chr2R 24481512 intron CG13579 + chr2R 24481569 intron CG13579 + chr2R_10_24480001 chr2R_24480001 RAL-555 874 chr2R 24590095 24590145 chr2R 24590203 24590236 5 101 0.0 3.0 1.5 2.0 141 chr2R 24590095 intron pio + chr2R 24590166 intron pio + chr2R 24590236 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-555 875 chr2R 24647587 24647607 chr2R 24655144 24655164 412 5 7557 4.0 3.0 3.5 1.1 7577 chr2R 24647587 intergenic not near genes chr2R 24651376 intergenic not near genes chr2R 24655164 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-555 876 chr2R 24690017 24690044 chr2R 24690113 24690140 7 96 0.5 2.0 1.2 3.2 123 chr2R 24690017 intergenic not near genes chr2R 24690078 intergenic not near genes chr2R 24690140 intergenic not near genes chr2R_7_24690001 chr2R_24690001 RAL-555 877 chr2R 24727887 24727915 chr2R 24735394 24735422 mdg1 14 7508 2.0 3.5 2.8 3.7 7535 chr2R 24727887 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735422 intron Mid1 - chr2R_14_24730001 chr2R_24730001 RAL-555 878 chr2R 24763609 24763642 chr2R 24765585 24765618 G2 16 1976 4.5 3.0 3.8 3.3 2009 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_16_24760001 chr2R_24760001 RAL-555 879 chr2R 24883890 24883909 chr2R 24883972 24883992 8 83 3.5 7.0 5.2 1.3 102 chr2R 24883890 intron NKAIN + chr2R 24883941 intron NKAIN + chr2R 24883992 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-555 880 chr2R 25014548 25014573 chr2R 25014624 25014648 9 75 2.0 2.5 2.2 2.8 100 chr2R 25014548 intron uzip + chr2R 25014598 intron uzip + chr2R 25014648 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-555 881 chr2R 25078983 25079019 chr2R 25079111 25079147 12 128 1.5 3.0 2.2 3.8 164 chr2R 25078983 intron gol - chr2R 25079065 intron gol - chr2R 25079147 intron gol - chr2R_12_25075001 chr2R_25075001 RAL-555 882 chr2R 25104803 25104831 chr2R 25104897 25104926 8 95 2.0 1.0 1.5 3.2 123 chr2R 25104803 intron lov - chr2R 25104864 intron lov - chr2R 25104926 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-555 883 chr2R 25124457 25124486 chr2R 25124547 25124577 7 91 4.5 0.0 2.2 2.2 120 chr2R 25124457 intron lov - chr2R 25124517 intron lov - chr2R 25124577 intron lov - chr2R_7_25120001 chr2R_25120001 RAL-555 884 chr2R 25135272 25135295 chr2R 25135357 25135380 7 85 3.5 1.5 2.5 2.0 108 chr2R 25135272 intron lov - chr2R 25135326 intron lov - chr2R 25135380 intron lov - chr2R_7_25135001 chr2R_25135001 RAL-555 885 chr2R 25167127 25167153 chr2R 25167207 25167233 8 80 1.0 1.5 1.2 3.6 106 chr2R 25167127 intergenic not near genes chr2R 25167180 intergenic CG34038 + chr2R 25167233 intergenic CG34038 + chr2R_8_25165001 chr2R_25165001 RAL-555 886 chr2R 25207466 25207482 chr2R 25207713 25207724 4 246 3.0 4.0 3.5 0.9 258 chr2R 25207466 intron CG9380 - chr2R 25207595 intron CG9380 - chr2R 25207724 intron CG9380 - chr2R_4_25205001 chr2R_25205001 RAL-555 887 chr3L 402692 402716 chr3L 409745 409769 297 11 7053 6.5 7.5 7.0 1.4 7077 chr3L 402692 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_11_405001 chr3L_405001 RAL-555 888 chr3L 456210 456238 chr3L 456289 456315 8 79 1.5 0.5 1.0 4.0 105 chr3L 456210 intron klar - chr3L 456262 intron klar - chr3L 456315 intron klar - chr3L_8_455001 chr3L_455001 RAL-555 889 chr3L 494596 494622 chr3L 494678 494704 9 82 6.0 0.0 3.0 2.2 108 chr3L 494596 intron klar - chr3L 494650 intron klar - chr3L 494704 intron klar - chr3L_9_490001 chr3L_490001 RAL-555 890 chr3L 642468 642502 chr3L 642559 642593 6 91 3.0 1.5 2.2 1.9 125 chr3L 642468 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-555 891 chr3L 651389 651420 chr3L 651477 651508 17 88 2.5 6.0 4.2 3.3 119 chr3L 651389 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651508 intergenic CG3402 -,Gale + chr3L_17_650001 chr3L_650001 RAL-555 892 chr3L 702163 702174 chr3L 702245 702255 5 82 2.0 2.5 2.2 1.6 92 chr3L 702163 intergenic not near genes chr3L 702209 intergenic not near genes chr3L 702255 intergenic not near genes chr3L_5_700001 chr3L_700001 RAL-555 893 chr3L 857998 858024 chr3L 866479 866505 Tirant 4 8481 4.0 4.0 4.0 0.8 8507 chr3L 857998 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866505 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-555 894 chr3L 925185 925208 chr3L 932611 932634 mdg1 11 7426 4.0 5.0 4.5 2.0 7449 chr3L 925185 intron Glut1 + chr3L 928910 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-555 895 chr3L 933910 933944 chr3L 934013 934045 14 103 1.5 3.5 2.5 4.0 135 chr3L 933910 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_14_930001 chr3L_930001 RAL-555 896 chr3L 939773 939799 chr3L 940894 940920 jockey 13 1121 8.5 9.5 9.0 1.3 1147 chr3L 939773 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-555 897 chr3L 949782 949804 chr3L 949868 949890 8 86 4.0 2.0 3.0 2.0 108 chr3L 949782 intron Glut1 + chr3L 949836 intron Glut1 + chr3L 949890 intron Glut1 + chr3L_8_945001 chr3L_945001 RAL-555 898 chr3L 954715 954749 chr3L 954891 954925 10 176 3.0 3.0 3.0 2.5 210 chr3L 954715 intron Glut1 + chr3L 954820 intron Glut1 + chr3L 954925 intron Glut1 + chr3L_10_950001 chr3L_950001 RAL-555 899 chr3L 961022 961042 chr3L 961115 961135 7 93 1.5 2.0 1.8 2.5 113 chr3L 961022 intron Glut1 + chr3L 961078 intron Glut1 + chr3L 961135 intron Glut1 + chr3L_7_960001 chr3L_960001 RAL-555 900 chr3L 1031590 1031601 chr3L 1031666 1031677 4 76 6.5 3.5 5.0 0.7 87 chr3L 1031590 intron trio - chr3L 1031634 intron trio - chr3L 1031677 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-555 901 chr3L 1109633 1109667 chr3L 1109721 1109755 14 88 3.0 2.5 2.8 3.7 122 chr3L 1109633 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_14_1105001 chr3L_1105001 RAL-555 902 chr3L 1131198 1131198 chr3L 22908066 22908067 5 21776868 12.5 19.5 16.0 0.3 21776869 chr3L 1131198 intergenic not near genes chr3L 12019632 intron rols - chr3L 22908067 intergenic not near genes chr3L_5_12015001 chr3L_12015001 RAL-555 903 chr3L 1154129 1154159 chr3L 1163278 1163309 roo 7 9150 3.5 0.5 2.0 2.3 9180 chr3L 1154129 intron bab2 - chr3L 1158719 intron bab2 - chr3L 1163309 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-555 904 chr3L 1219594 1219625 chr3L 1227327 1227356 412 12 7733 3.0 3.5 3.2 2.9 7762 chr3L 1219594 intron mwh + chr3L 1223475 intron mwh + chr3L 1227356 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-555 905 chr3L 1310982 1311010 chr3L 1315842 1315870 5 4861 33.0 25.0 29.0 0.2 4888 chr3L 1310982 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315870 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-555 906 chr3L 1361291 1361322 chr3L 1361366 1361398 8 76 3.5 3.5 3.5 1.8 107 chr3L 1361291 intron Ptp61F - chr3L 1361344 intron Ptp61F - chr3L 1361398 intron Ptp61F - chr3L_8_1360001 chr3L_1360001 RAL-555 907 chr3L 1391978 1391993 chr3L 1392055 1392079 7 84 2.5 4.0 3.2 1.7 101 chr3L 1391978 intron Ptp61F - chr3L 1392028 intron Ptp61F - chr3L 1392079 intron Ptp61F - chr3L_7_1390001 chr3L_1390001 RAL-555 908 chr3L 1396741 1396759 chr3L 1396825 1396843 6 84 5.5 3.5 4.5 1.1 102 chr3L 1396741 intron Ptp61F - chr3L 1396792 intron Ptp61F - chr3L 1396843 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-555 909 chr3L 1463416 1463446 chr3L 1463497 1463527 14 81 6.5 5.5 6.0 2.0 111 chr3L 1463416 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463527 intron Ptp61F - chr3L_14_1460001 chr3L_1460001 RAL-555 910 chr3L 1502004 1502021 chr3L 1502085 1502102 6 81 0.5 3.5 2.0 2.0 98 chr3L 1502004 intron pUf68 - chr3L 1502053 intron pUf68 - chr3L 1502102 intron pUf68 - chr3L_6_1500001 chr3L_1500001 RAL-555 911 chr3L 1505996 1506027 chr3L 1513593 1513624 17.6 8 7596 4.5 2.0 3.2 1.9 7628 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513624 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-555 912 chr3L 1569525 1569533 chr3L 1569601 1569609 8 76 2.5 4.5 3.5 1.8 84 chr3L 1569525 5` UTR CG12004 + chr3L 1569567 intron CG12004 + chr3L 1569609 intron CG12004 + chr3L_8_1565001 chr3L_1565001 RAL-555 913 chr3L 1675520 1675545 chr3L 1675593 1675622 9 76 3.0 5.0 4.0 1.8 102 chr3L 1675520 intron CG7991 + chr3L 1675571 intron CG7991 + chr3L 1675622 intron CG7991 + chr3L_9_1675001 chr3L_1675001 RAL-555 914 chr3L 1740867 1740879 chr3L 1741109 1741122 pogo 4 243 3.5 4.5 4.0 0.8 255 chr3L 1740867 intron Gk + chr3L 1740994 intron Gk + chr3L 1741122 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-555 915 chr3L 1817109 1817113 chr3L 1817187 1817192 4 79 2.0 4.0 3.0 1.0 83 chr3L 1817109 intron GV1 + chr3L 1817150 intron GV1 + chr3L 1817192 intron GV1 + chr3L_4_1815001 chr3L_1815001 RAL-555 916 chr3L 1991119 1991152 chr3L 1991197 1991230 7 78 0.5 1.5 1.0 3.5 111 chr3L 1991119 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991230 intergenic not near genes chr3L_7_1990001 chr3L_1990001 RAL-555 917 chr3L 2016072 2016100 chr3L 2016208 2016236 8 136 3.5 0.0 1.8 2.9 164 chr3L 2016072 intergenic not near genes chr3L 2016154 intergenic not near genes chr3L 2016236 intergenic not near genes chr3L_8_2015001 chr3L_2015001 RAL-555 918 chr3L 2035265 2035289 chr3L 2035341 2035365 9 76 3.5 0.0 1.8 3.2 100 chr3L 2035265 intergenic not near genes chr3L 2035315 intergenic not near genes chr3L 2035365 intergenic not near genes chr3L_9_2035001 chr3L_2035001 RAL-555 919 chr3L 2108251 2108284 chr3L 2113455 2113488 copia 8 5204 1.5 4.5 3.0 2.0 5237 chr3L 2108251 intron sls - chr3L 2110870 intron sls - chr3L 2113488 intron sls - chr3L_8_2110001 chr3L_2110001 RAL-555 920 chr3L 2139210 2139227 chr3L 2139291 2139308 7 81 3.0 5.5 4.2 1.3 98 chr3L 2139210 intron zormin - chr3L 2139259 intron zormin - chr3L 2139308 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-555 921 chr3L 2277975 2278010 chr3L 2278171 2278206 11 196 4.0 1.5 2.8 2.9 231 chr3L 2277975 3` UTR yellow-g2 + chr3L 2278090 intergenic yellow-g2 + chr3L 2278206 intergenic yellow-g2 + chr3L_11_2275001 chr3L_2275001 RAL-555 922 chr3L 2308006 2308036 chr3L 2308111 2308142 8 106 4.0 4.5 4.2 1.5 136 chr3L 2308006 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-555 923 chr3L 2330257 2330278 chr3L 2330340 2330360 4 83 0.5 0.5 0.5 2.7 103 chr3L 2330257 intron MsR1 + chr3L 2330308 intron MsR1 + chr3L 2330360 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-555 924 chr3L 2331583 2331607 chr3L 2331660 2331684 7 77 1.5 2.0 1.8 2.5 101 chr3L 2331583 intron MsR1 + chr3L 2331634 intron MsR1 + chr3L 2331684 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-555 925 chr3L 2356072 2356105 chr3L 2356822 2356855 5 750 2.5 3.0 2.8 1.3 783 chr3L 2356072 intergenic not near genes chr3L 2356464 intergenic not near genes chr3L 2356855 intergenic not near genes chr3L_5_2355001 chr3L_2355001 RAL-555 926 chr3L 2360018 2360051 chr3L 2360112 2360145 18 93 3.5 3.5 3.5 4.0 127 chr3L 2360018 intergenic not near genes chr3L 2360082 intergenic CG13801 + chr3L 2360145 intergenic CG13801 + chr3L_18_2360001 chr3L_2360001 RAL-555 927 chr3L 2366089 2366117 chr3L 2366174 2366202 11 85 2.0 3.0 2.5 3.1 113 chr3L 2366089 intergenic not near genes chr3L 2366146 intergenic not near genes chr3L 2366202 intergenic not near genes chr3L_11_2365001 chr3L_2365001 RAL-555 928 chr3L 2447504 2447536 chr3L 2456660 2456692 roo 8 9156 2.0 5.0 3.5 1.8 9188 chr3L 2447504 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-555 929 chr3L 2558526 2558526 chr3L 22908066 22908067 4 20349540 3.0 19.5 11.2 0.3 20349541 chr3L 2558526 intron msn - chr3L 12733296 intergenic SmD1 - chr3L 22908067 intergenic not near genes chr3L_4_12730001 chr3L_12730001 RAL-555 930 chr3L 2561530 2561537 chr3L 2561607 2561614 4 77 4.0 1.0 2.5 1.1 84 chr3L 2561530 intron msn - chr3L 2561572 intron msn - chr3L 2561614 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-555 931 chr3L 2581898 2581912 chr3L 2581992 2582006 4 94 0.5 1.5 1.0 2.0 108 chr3L 2581898 intron msn - chr3L 2581952 intron msn - chr3L 2582006 intron msn - chr3L_4_2580001 chr3L_2580001 RAL-555 932 chr3L 2626564 2626595 chr3L 2627027 2627058 15 463 3.5 4.5 4.0 3.0 494 chr3L 2626564 intron Pxn - chr3L 2626811 intron Pxn - chr3L 2627058 intron Pxn - chr3L_15_2625001 chr3L_2625001 RAL-555 933 chr3L 2683945 2683977 chr3L 2684021 2684053 6 76 2.5 1.5 2.0 2.0 108 chr3L 2683945 intron Fife - chr3L 2683999 intron Fife - chr3L 2684053 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-555 934 chr3L 2719537 2719554 chr3L 2719638 2719656 5 101 2.0 2.0 2.0 1.7 119 chr3L 2719537 3` UTR Mrtf - chr3L 2719596 3` UTR Mrtf - chr3L 2719656 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-555 935 chr3L 2732980 2732982 chr3L 22908066 22908067 7 20175085 6.5 19.5 13.0 0.5 20175087 chr3L 2732980 intron Mrtf - chr3L 12820524 exon CG42588 + chr3L 22908067 intergenic not near genes chr3L_7_12820001 chr3L_12820001 RAL-555 936 chr3L 2747394 2747396 chr3L 22908066 22908067 8 20160672 11.0 19.5 15.2 0.5 20160673 chr3L 2747394 intron Mrtf - chr3L 12827730 intron CG10960 - chr3L 22908067 intergenic not near genes chr3L_8_12825001 chr3L_12825001 RAL-555 937 chr3L 2795724 2795745 chr3L 2795847 2795868 7 123 2.0 2.0 2.0 2.3 144 chr3L 2795724 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795868 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-555 938 chr3L 2810242 2810251 chr3L 2810321 2810329 4 78 1.5 4.0 2.8 1.1 87 chr3L 2810242 intron CG43444 - chr3L 2810286 intron CG43444 - chr3L 2810329 intron CG43444 - chr3L_4_2810001 chr3L_2810001 RAL-555 939 chr3L 2812334 2812366 chr3L 2812416 2812448 6 82 7.0 0.0 3.5 1.3 114 chr3L 2812334 intron CG43444 - chr3L 2812391 intron CG43444 - chr3L 2812448 intron CG43444 - chr3L_6_2810001 chr3L_2810001 RAL-555 940 chr3L 2834770 2834786 chr3L 2834932 2834948 4 162 1.5 4.0 2.8 1.1 178 chr3L 2834770 intron CG43444 - chr3L 2834859 intron CG43444 - chr3L 2834948 intron CG43444 - chr3L_4_2830001 chr3L_2830001 RAL-555 941 chr3L 2855971 2856003 chr3L 2856156 2856188 15 185 3.0 6.0 4.5 2.7 217 chr3L 2855971 intron CG43444 - chr3L 2856080 intron CG43444 - chr3L 2856188 intron CG43444 - chr3L_15_2855001 chr3L_2855001 RAL-555 942 chr3L 2869007 2869009 chr3L 23871316 23871318 4 21002309 12.5 6.0 9.2 0.4 21002311 chr3L 2869007 intron CG43444 - chr3L 13370162 intergenic not near genes chr3L 23871318 intron CG40470 - chr3L_4_13370001 chr3L_13370001 RAL-555 943 chr3L 2904456 2904482 chr3L 2904540 2904566 5 84 6.0 2.5 4.2 1.0 110 chr3L 2904456 intron Shab + chr3L 2904511 intron Shab + chr3L 2904566 intron Shab + chr3L_5_2900001 chr3L_2900001 RAL-555 944 chr3L 2910110 2910114 chr3L 2910192 2910196 5 82 3.0 0.0 1.5 2.0 86 chr3L 2910110 intron Shab + chr3L 2910153 intron Shab + chr3L 2910196 intron Shab + chr3L_5_2910001 chr3L_2910001 RAL-555 945 chr3L 2927844 2927872 chr3L 2936121 2936148 Tirant 9 8277 2.0 5.5 3.8 1.9 8304 chr3L 2927844 intron Shab + chr3L 2931996 intron Shab + chr3L 2936148 intron Shab + chr3L_9_2930001 chr3L_2930001 RAL-555 946 chr3L 3040329 3040350 chr3L 3042118 3042139 S-element 5 1789 2.5 2.0 2.2 1.6 1810 chr3L 3040329 3` UTR CG2162 + chr3L 3041234 intergenic not near genes chr3L 3042139 intergenic Jafrac2 + chr3L_5_3040001 chr3L_3040001 RAL-555 947 chr3L 3057251 3057276 chr3L 3057395 3057420 5 144 3.5 4.5 4.0 1.0 169 chr3L 3057251 exon CG32486 - chr3L 3057336 intron CG32486 - chr3L 3057420 intron CG32486 - chr3L_5_3055001 chr3L_3055001 RAL-555 948 chr3L 3061284 3061313 chr3L 3069867 3069896 Tirant 6 8583 1.5 0.5 1.0 3.0 8612 chr3L 3061284 intron CG32486 - chr3L 3065590 intron CG32486 - chr3L 3069896 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-555 949 chr3L 3178732 3178738 chr3L 3178815 3178821 5 83 9.0 0.5 4.8 0.9 89 chr3L 3178732 intergenic CG14964 -,Girdin + chr3L 3178776 intergenic Girdin +,CG14964 - chr3L 3178821 intergenic Girdin +,CG14964 - chr3L_5_3175001 chr3L_3175001 RAL-555 950 chr3L 3194378 3194383 chr3L 22908066 22908066 9 19713686 10.5 19.5 15.0 0.6 19713688 chr3L 3194378 intron Hsp83 + chr3L 13051222 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_9_13050001 chr3L_13050001 RAL-555 951 chr3L 3252355 3252364 chr3L 3252431 3252440 4 76 0.5 0.0 0.2 3.3 85 chr3L 3252355 5` UTR CR43626 + chr3L 3252398 5` UTR CR43626 + chr3L 3252440 5` UTR CR43626 + chr3L_4_3250001 chr3L_3250001 RAL-555 952 chr3L 3259823 3259833 chr3L 3259923 3259933 6 100 1.5 3.5 2.5 1.7 110 chr3L 3259823 intron ckd + chr3L 3259878 intron ckd + chr3L 3259933 intron ckd + chr3L_6_3255001 chr3L_3255001 RAL-555 953 chr3L 3263795 3263814 chr3L 3263873 3263893 6 79 0.0 4.0 2.0 2.0 98 chr3L 3263795 intron ckd + chr3L 3263844 intron ckd + chr3L 3263893 intron ckd + chr3L_6_3260001 chr3L_3260001 RAL-555 954 chr3L 3269082 3269092 chr3L 3269195 3269205 6 113 1.0 2.5 1.8 2.1 123 chr3L 3269082 intergenic CG34265 + chr3L 3269144 intergenic CG34265 + chr3L 3269205 intergenic CG34265 + chr3L_6_3265001 chr3L_3265001 RAL-555 955 chr3L 3272315 3272351 chr3L 3272404 3272440 15 88 2.5 2.5 2.5 4.3 125 chr3L 3272315 intron CG14960 + chr3L 3272378 intron CG14960 + chr3L 3272440 intron CG14960 + chr3L_15_3270001 chr3L_3270001 RAL-555 956 chr3L 3281440 3281470 chr3L 3281936 3281966 Doc 20 496 6.0 7.0 6.5 2.7 526 chr3L 3281440 intron CG12017 + chr3L 3281703 intron CG12017 + chr3L 3281966 intron CG12017 + chr3L_20_3280001 chr3L_3280001 RAL-555 957 chr3L 3307417 3307444 chr3L 3307496 3307524 10 80 5.5 2.0 3.8 2.1 107 chr3L 3307417 intron ZnT63C + chr3L 3307470 intron ZnT63C + chr3L 3307524 intron ZnT63C + chr3L_10_3305001 chr3L_3305001 RAL-555 958 chr3L 3310291 3310326 chr3L 3310370 3310405 11 79 2.0 2.5 2.2 3.4 114 chr3L 3310291 intron ZnT63C + chr3L 3310348 intron ZnT63C + chr3L 3310405 intron ZnT63C + chr3L_11_3310001 chr3L_3310001 RAL-555 959 chr3L 3388581 3388616 chr3L 3388674 3388708 9 93 2.5 3.0 2.8 2.4 127 chr3L 3388581 intergenic not near genes chr3L 3388644 intergenic not near genes chr3L 3388708 intergenic not near genes chr3L_9_3385001 chr3L_3385001 RAL-555 960 chr3L 3436293 3436315 chr3L 3436372 3436393 6 79 2.5 3.0 2.8 1.6 100 chr3L 3436293 intron eIF5B - chr3L 3436343 intron eIF5B - chr3L 3436393 intron eIF5B - chr3L_6_3435001 chr3L_3435001 RAL-555 961 chr3L 3475082 3475109 chr3L 3475526 3475553 jockey 16 444 3.0 3.5 3.2 3.8 471 chr3L 3475082 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_16_3475001 chr3L_3475001 RAL-555 962 chr3L 3494199 3494201 chr3L 3494276 3494278 4 77 2.5 3.5 3.0 1.0 79 chr3L 3494199 intron CG42324 + chr3L 3494238 intron CG42324 + chr3L 3494278 intron CG42324 + chr3L_4_3490001 chr3L_3490001 RAL-555 963 chr3L 3530702 3530707 chr3L 3530780 3530785 4 78 3.5 0.0 1.8 1.4 83 chr3L 3530702 intron Eip63E + chr3L 3530744 intron Eip63E + chr3L 3530785 intron Eip63E + chr3L_4_3530001 chr3L_3530001 RAL-555 964 chr3L 3566398 3566423 chr3L 3566481 3566506 8 83 3.0 3.0 3.0 2.0 108 chr3L 3566398 intron Eip63E + chr3L 3566452 intron Eip63E + chr3L 3566506 intron Eip63E + chr3L_8_3565001 chr3L_3565001 RAL-555 965 chr3L 3577737 3577767 chr3L 3577815 3577845 7 78 2.0 3.5 2.8 1.8 108 chr3L 3577737 intron Eip63E + chr3L 3577791 intron Eip63E + chr3L 3577845 intron Eip63E + chr3L_7_3575001 chr3L_3575001 RAL-555 966 chr3L 3585596 3585622 chr3L 3585688 3585714 5 92 0.0 1.5 0.8 2.8 118 chr3L 3585596 intron Eip63E + chr3L 3585655 intron Eip63E + chr3L 3585714 intron Eip63E + chr3L_5_3585001 chr3L_3585001 RAL-555 967 chr3L 3601296 3601329 chr3L 3606607 3606640 copia 9 5311 2.5 3.5 3.0 2.2 5344 chr3L 3601296 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-555 968 chr3L 3627236 3627257 chr3L 3627341 3627362 4 105 1.5 3.0 2.2 1.2 126 chr3L 3627236 intron dar1 + chr3L 3627299 intron dar1 + chr3L 3627362 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-555 969 chr3L 3642156 3642185 chr3L 3642262 3642291 14 106 3.5 4.0 3.8 2.9 135 chr3L 3642156 intron dar1 + chr3L 3642224 intron dar1 + chr3L 3642291 intron dar1 + chr3L_14_3640001 chr3L_3640001 RAL-555 970 chr3L 3777065 3777067 chr3L 22908066 22908067 8 19131001 7.0 19.5 13.2 0.6 19131002 chr3L 3777065 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_8_13340001 chr3L_13340001 RAL-555 971 chr3L 3797240 3797264 chr3L 3797323 3797347 9 83 2.0 2.5 2.2 2.8 107 chr3L 3797240 intron CG32264 - chr3L 3797294 intron CG32264 - chr3L 3797347 intron CG32264 - chr3L_9_3795001 chr3L_3795001 RAL-555 972 chr3L 3833751 3833770 chr3L 3833992 3834011 pogo 8 241 1.5 1.5 1.5 3.2 260 chr3L 3833751 intron enc + chr3L 3833881 intron enc + chr3L 3834011 intron enc + chr3L_8_3830001 chr3L_3830001 RAL-555 973 chr3L 3935828 3935849 chr3L 3935906 3935927 10 78 0.0 1.5 0.8 5.6 99 chr3L 3935828 5` UTR Eip63F-2 + chr3L 3935878 5` UTR Eip63F-2 + chr3L 3935927 5` UTR Eip63F-2 + chr3L_10_3935001 chr3L_3935001 RAL-555 974 chr3L 4146828 4146841 chr3L 4146910 4146923 4 82 0.0 2.5 1.2 1.8 95 chr3L 4146828 intergenic not near genes chr3L 4146876 intergenic not near genes chr3L 4146923 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-555 975 chr3L 4344888 4344905 chr3L 4344995 4345012 4 107 4.0 0.0 2.0 1.3 124 chr3L 4344888 intron Cip4 - chr3L 4344950 intron Cip4 - chr3L 4345012 intron Cip4 - chr3L_4_4340001 chr3L_4340001 RAL-555 976 chr3L 4391200 4391228 chr3L 4391276 4391304 7 76 2.5 1.5 2.0 2.3 104 chr3L 4391200 exon slow + chr3L 4391252 intron slow + chr3L 4391304 intron slow + chr3L_7_4390001 chr3L_4390001 RAL-555 977 chr3L 4481121 4481142 chr3L 4481345 4481365 4 223 19.5 5.0 12.2 0.3 244 chr3L 4481121 exon CG7465 + chr3L 4481243 exon CG7465 + chr3L 4481365 exon CG7465 + chr3L_4_4480001 chr3L_4480001 RAL-555 978 chr3L 4484725 4484748 chr3L 4484803 4484826 11 78 2.0 2.0 2.0 3.7 101 chr3L 4484725 intergenic CG11350 +,CG13722 - chr3L 4484776 intergenic CG13722 -,CG11350 + chr3L 4484826 intergenic CG13722 -,CG11350 + chr3L_11_4480001 chr3L_4480001 RAL-555 979 chr3L 4519429 4519451 chr3L 4519506 4519528 6 77 3.5 1.5 2.5 1.7 99 chr3L 4519429 intron Tie - chr3L 4519478 intron Tie - chr3L 4519528 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-555 980 chr3L 4547102 4547138 chr3L 4547367 4547403 15 265 4.0 3.0 3.5 3.3 301 chr3L 4547102 intron CG11357 + chr3L 4547252 intron CG11357 + chr3L 4547403 intron CG11357 + chr3L_15_4545001 chr3L_4545001 RAL-555 981 chr3L 4674155 4674180 chr3L 4674241 4674266 5 86 4.0 3.5 3.8 1.0 111 chr3L 4674155 intron axo - chr3L 4674210 intron axo - chr3L 4674266 intron axo - chr3L_5_4670001 chr3L_4670001 RAL-555 982 chr3L 4684813 4684830 chr3L 4685118 4685135 12 304 2.5 6.0 4.2 2.3 322 chr3L 4684813 intron axo - chr3L 4684974 intron axo - chr3L 4685135 intron axo - chr3L_12_4680001 chr3L_4680001 RAL-555 983 chr3L 4782106 4782117 chr3L 4782206 4782217 4 100 4.0 5.0 4.5 0.7 111 chr3L 4782106 intron RhoGEF64C + chr3L 4782162 intron RhoGEF64C + chr3L 4782217 intron RhoGEF64C + chr3L_4_4780001 chr3L_4780001 RAL-555 984 chr3L 4858310 4858337 chr3L 4858400 4858427 10 90 3.5 3.0 3.2 2.4 117 chr3L 4858310 intergenic not near genes chr3L 4858368 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-555 985 chr3L 4901131 4901154 chr3L 4907321 4907344 diver 5 6190 4.0 1.5 2.8 1.3 6213 chr3L 4901131 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-555 986 chr3L 4958412 4958445 chr3L 4958500 4958533 10 88 1.0 1.0 1.0 5.0 121 chr3L 4958412 intron Con - chr3L 4958472 intron Con - chr3L 4958533 intron Con - chr3L_10_4955001 chr3L_4955001 RAL-555 987 chr3L 4989177 4989185 chr3L 4989267 4989275 6 90 0.0 2.5 1.2 2.7 98 chr3L 4989177 intron Con - chr3L 4989226 intron Con - chr3L 4989275 intron Con - chr3L_6_4985001 chr3L_4985001 RAL-555 988 chr3L 5034157 5034191 chr3L 5043309 5043343 roo 7 9152 2.0 3.0 2.5 2.0 9186 chr3L 5034157 intron Con - chr3L 5038750 intron Con - chr3L 5043343 intron Con - chr3L_7_5035001 chr3L_5035001 RAL-555 989 chr3L 5045456 5045476 chr3L 5050237 5050257 Doc 4 4781 3.5 2.0 2.8 1.1 4801 chr3L 5045456 intron Con - chr3L 5047856 intron Con - chr3L 5050257 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-555 990 chr3L 5059418 5059452 chr3L 5059505 5059539 11 87 2.5 2.5 2.5 3.1 121 chr3L 5059418 intron Con - chr3L 5059478 intron Con - chr3L 5059539 intron Con - chr3L_11_5055001 chr3L_5055001 RAL-555 991 chr3L 5101212 5101231 chr3L 5101292 5101311 5 80 2.0 4.0 3.0 1.2 99 chr3L 5101212 intergenic not near genes chr3L 5101262 intergenic not near genes chr3L 5101311 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-555 992 chr3L 5104486 5104510 chr3L 5124620 5124644 4 20134 1.0 2.5 1.8 1.4 20158 chr3L 5104486 intergenic not near genes chr3L 5114565 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-555 993 chr3L 5228431 5228460 chr3L 5228506 5228540 11 79 5.5 3.0 4.2 2.1 109 chr3L 5228431 intron shep - chr3L 5228486 intron shep - chr3L 5228540 intron shep - chr3L_11_5225001 chr3L_5225001 RAL-555 994 chr3L 5245157 5245158 chr3L 22908066 22908067 5 17662909 9.5 19.5 14.5 0.3 17662910 chr3L 5245157 intron shep - chr3L 14076612 intron btl + chr3L 22908067 intergenic not near genes chr3L_5_14075001 chr3L_14075001 RAL-555 995 chr3L 5326796 5326797 chr3L 22908066 22908067 4 17581270 8.0 19.5 13.8 0.3 17581271 chr3L 5326796 intergenic not near genes chr3L 14117432 intron Sox21b - chr3L 22908067 intergenic not near genes chr3L_4_14115001 chr3L_14115001 RAL-555 996 chr3L 5339826 5339846 chr3L 5340069 5340090 4 244 6.5 3.5 5.0 0.7 264 chr3L 5339826 intergenic not near genes chr3L 5339958 intergenic not near genes chr3L 5340090 intergenic not near genes chr3L_4_5335001 chr3L_5335001 RAL-555 997 chr3L 5386811 5386843 chr3L 5387511 5387543 14 700 6.5 2.5 4.5 2.5 732 chr3L 5386811 intergenic not near genes chr3L 5387177 intergenic not near genes chr3L 5387543 intergenic not near genes chr3L_14_5385001 chr3L_5385001 RAL-555 998 chr3L 5458060 5458073 chr3L 5466661 5466673 Max-element 4 8601 9.5 2.5 6.0 0.6 8613 chr3L 5458060 intergenic not near genes chr3L 5462366 intergenic not near genes chr3L 5466673 intergenic not near genes chr3L_4_5460001 chr3L_5460001 RAL-555 999 chr3L 5504562 5504587 chr3L 5504639 5504665 5 78 1.0 0.0 0.5 3.3 103 chr3L 5504562 intron CG34342 - chr3L 5504614 intron CG34342 - chr3L 5504665 intron CG34342 - chr3L_5_5500001 chr3L_5500001 RAL-555 1000 chr3L 5514743 5514765 chr3L 5514820 5514842 7 77 2.5 2.0 2.2 2.2 99 chr3L 5514743 intron Lkr - chr3L 5514792 intron Lkr - chr3L 5514842 intron Lkr - chr3L_7_5510001 chr3L_5510001 RAL-555 1001 chr3L 5537718 5537756 chr3L 5538060 5538098 jockey 22 342 3.0 2.0 2.5 6.3 380 chr3L 5537718 intergenic not near genes chr3L 5537908 intergenic not near genes chr3L 5538098 intergenic CG10625 - chr3L_22_5535001 chr3L_5535001 RAL-555 1002 chr3L 5690476 5690499 chr3L 5690554 5690576 6 78 1.0 6.0 3.5 1.3 100 chr3L 5690476 intron sif + chr3L 5690526 intron sif + chr3L 5690576 intron sif + chr3L_6_5690001 chr3L_5690001 RAL-555 1003 chr3L 5855569 5855572 chr3L 22908066 22908066 11 17052496 2.0 19.5 10.8 0.9 17052497 chr3L 5855569 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908066 intergenic not near genes chr3L_11_14380001 chr3L_14380001 RAL-555 1004 chr3L 5908077 5908106 chr3L 5908157 5908186 9 80 1.0 0.0 0.5 6.0 109 chr3L 5908077 intron CG13288 + chr3L 5908132 intron CG13288 + chr3L 5908186 intron CG13288 + chr3L_9_5905001 chr3L_5905001 RAL-555 1005 chr3L 5910032 5910064 chr3L 5910273 5910304 pogo 11 240 1.5 3.0 2.2 3.4 272 chr3L 5910032 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_11_5910001 chr3L_5910001 RAL-555 1006 chr3L 5926317 5926352 chr3L 5926507 5926540 BS 8 188 4.5 2.5 3.5 1.8 223 chr3L 5926317 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-555 1007 chr3L 6001683 6001716 chr3L 6004383 6004416 jockey 8 2700 2.0 0.5 1.2 3.6 2733 chr3L 6001683 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004416 intron PVRAP + chr3L_8_6000001 chr3L_6000001 RAL-555 1008 chr3L 6052653 6052669 chr3L 6052738 6052752 8 84 3.5 7.0 5.2 1.3 99 chr3L 6052653 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-555 1009 chr3L 6065013 6065045 chr3L 6065090 6065122 5 77 2.0 1.5 1.8 1.8 109 chr3L 6065013 intergenic not near genes chr3L 6065068 intergenic not near genes chr3L 6065122 intergenic not near genes chr3L_5_6065001 chr3L_6065001 RAL-555 1010 chr3L 6162364 6162381 chr3L 6162444 6162462 4 80 1.0 1.5 1.2 1.8 98 chr3L 6162364 intergenic CR45744 - chr3L 6162413 intergenic CR45744 - chr3L 6162462 intergenic CR45744 - chr3L_4_6160001 chr3L_6160001 RAL-555 1011 chr3L 6220912 6220948 chr3L 6230064 6230100 roo 10 9151 3.5 1.5 2.5 2.9 9188 chr3L 6220912 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_10_6225001 chr3L_6225001 RAL-555 1012 chr3L 6293765 6293798 chr3L 6293847 6293880 16 82 4.5 4.5 4.5 2.9 115 chr3L 6293765 intergenic not near genes chr3L 6293822 intergenic not near genes chr3L 6293880 intergenic not near genes chr3L_16_6290001 chr3L_6290001 RAL-555 1013 chr3L 6335011 6335037 chr3L 6335481 6335508 297 5 471 3.0 1.5 2.2 1.6 497 chr3L 6335011 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335508 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-555 1014 chr3L 6524745 6524770 chr3L 6524841 6524866 9 96 4.5 1.5 3.0 2.2 121 chr3L 6524745 intron sfl + chr3L 6524806 intron sfl + chr3L 6524866 intron sfl + chr3L_9_6520001 chr3L_6520001 RAL-555 1015 chr3L 6652080 6652108 chr3L 6652163 6652191 12 83 5.0 2.0 3.5 2.7 111 chr3L 6652080 intergenic not near genes chr3L 6652136 intergenic not near genes chr3L 6652191 intergenic not near genes chr3L_12_6650001 chr3L_6650001 RAL-555 1016 chr3L 6687892 6687925 chr3L 6687992 6688026 13 101 2.0 3.0 2.5 3.7 134 chr3L 6687892 intergenic not near genes chr3L 6687959 intergenic not near genes chr3L 6688026 intergenic not near genes chr3L_13_6685001 chr3L_6685001 RAL-555 1017 chr3L 6781127 6781141 chr3L 6783139 6783154 Doc 6 2011 3.0 0.0 1.5 2.4 2027 chr3L 6781127 intergenic not near genes chr3L 6782140 intergenic not near genes chr3L 6783154 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-555 1018 chr3L 6868719 6868732 chr3L 6868797 6868810 7 78 0.0 2.0 1.0 3.5 91 chr3L 6868719 intergenic not near genes chr3L 6868764 intergenic not near genes chr3L 6868810 intergenic not near genes chr3L_7_6865001 chr3L_6865001 RAL-555 1019 chr3L 6887522 6887550 chr3L 6895014 6895042 roo 9 7492 2.5 3.5 3.0 2.2 7520 chr3L 6887522 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-555 1020 chr3L 6934345 6934365 chr3L 6934456 6934475 4 111 3.0 2.5 2.8 1.1 130 chr3L 6934345 exon CG14820 + chr3L 6934410 intron CG14820 + chr3L 6934475 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-555 1021 chr3L 6974503 6974525 chr3L 6974603 6974625 11 101 0.0 3.0 1.5 4.4 122 chr3L 6974503 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974625 intron Galphai - chr3L_11_6970001 chr3L_6970001 RAL-555 1022 chr3L 7022023 7022051 chr3L 7022231 7022259 7 208 0.0 2.5 1.2 3.2 236 chr3L 7022023 intron Mp + chr3L 7022141 intron Mp + chr3L 7022259 intron Mp + chr3L_7_7020001 chr3L_7020001 RAL-555 1023 chr3L 7033066 7033089 chr3L 7033163 7033185 8 97 0.0 4.0 2.0 2.7 119 chr3L 7033066 intron Mp + chr3L 7033126 intron Mp + chr3L 7033185 intron Mp + chr3L_8_7030001 chr3L_7030001 RAL-555 1024 chr3L 7104047 7104071 chr3L 7104151 7104175 11 104 1.0 1.0 1.0 5.5 128 chr3L 7104047 intron form3 + chr3L 7104111 intron form3 + chr3L 7104175 intron form3 + chr3L_11_7100001 chr3L_7100001 RAL-555 1025 chr3L 7112602 7112616 chr3L 7112689 7112703 5 87 0.5 6.0 3.2 1.2 101 chr3L 7112602 intron form3 + chr3L 7112652 intron form3 + chr3L 7112703 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-555 1026 chr3L 7129965 7129987 chr3L 7130157 7130179 BS 5 192 2.0 2.5 2.2 1.6 214 chr3L 7129965 intergenic CG15829 + chr3L 7130072 intergenic CG15829 + chr3L 7130179 intergenic not near genes chr3L_5_7130001 chr3L_7130001 RAL-555 1027 chr3L 7175036 7175056 chr3L 7175266 7175286 7 230 1.5 2.5 2.0 2.3 250 chr3L 7175036 intron Dscam2 - chr3L 7175161 intron Dscam2 - chr3L 7175286 intron Dscam2 - chr3L_7_7175001 chr3L_7175001 RAL-555 1028 chr3L 7218093 7218118 chr3L 7218171 7218196 7 76 2.5 2.5 2.5 2.0 103 chr3L 7218093 intergenic not near genes chr3L 7218144 intergenic not near genes chr3L 7218196 intergenic not near genes chr3L_7_7215001 chr3L_7215001 RAL-555 1029 chr3L 7377319 7377340 chr3L 7380424 7380445 297 6 3105 1.0 3.0 2.0 2.0 3126 chr3L 7377319 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380445 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-555 1030 chr3L 7433019 7433049 chr3L 7433162 7433192 6 144 15.0 15.5 15.2 0.4 173 chr3L 7433019 intron CG42458 + chr3L 7433106 intron CG42458 + chr3L 7433192 intron CG42458 + chr3L_6_7430001 chr3L_7430001 RAL-555 1031 chr3L 7444823 7444862 chr3L 7444902 7444941 10 78 2.0 1.0 1.5 4.0 118 chr3L 7444823 intron CG42458 + chr3L 7444882 intron CG42458 + chr3L 7444941 intron CG42458 + chr3L_10_7440001 chr3L_7440001 RAL-555 1032 chr3L 7452547 7452576 chr3L 7452629 7452658 7 82 0.0 0.5 0.2 5.8 111 chr3L 7452547 intron CG42458 + chr3L 7452602 intron CG42458 + chr3L 7452658 intron CG42458 + chr3L_7_7450001 chr3L_7450001 RAL-555 1033 chr3L 7490920 7490947 chr3L 7490997 7491024 11 76 3.5 1.0 2.2 3.4 104 chr3L 7490920 intergenic not near genes chr3L 7490972 intergenic not near genes chr3L 7491024 intergenic not near genes chr3L_11_7490001 chr3L_7490001 RAL-555 1034 chr3L 7498758 7498788 chr3L 7503535 7503565 F-element 12 4777 2.5 0.5 1.5 4.8 4807 chr3L 7498758 5` UTR CG8539 - chr3L 7501162 intergenic not near genes chr3L 7503565 intergenic not near genes chr3L_12_7500001 chr3L_7500001 RAL-555 1035 chr3L 7576228 7576235 chr3L 7576315 7576323 4 88 4.5 4.5 4.5 0.7 95 chr3L 7576228 intergenic not near genes chr3L 7576276 intergenic not near genes chr3L 7576323 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-555 1036 chr3L 7591145 7591182 chr3L 7591236 7591272 10 90 2.0 4.0 3.0 2.5 127 chr3L 7591145 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591272 intergenic CG7716 - chr3L_10_7590001 chr3L_7590001 RAL-555 1037 chr3L 7793713 7793741 chr3L 7800765 7800793 297 9 7052 3.0 2.5 2.8 2.4 7080 chr3L 7793713 intron CG32369 - chr3L 7797253 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-555 1038 chr3L 7842702 7842732 chr3L 7842858 7842888 9 156 1.5 0.0 0.8 5.0 186 chr3L 7842702 intron Pdp1 - chr3L 7842795 intron Pdp1 - chr3L 7842888 intron Pdp1 - chr3L_9_7840001 chr3L_7840001 RAL-555 1039 chr3L 7883751 7883774 chr3L 7883908 7883931 9 157 2.0 0.0 1.0 4.5 180 chr3L 7883751 intron CG32365 + chr3L 7883841 intron CG32365 + chr3L 7883931 intron CG32365 + chr3L_9_7880001 chr3L_7880001 RAL-555 1040 chr3L 7886520 7886544 chr3L 7889038 7889062 Stalker4 10 2518 1.0 4.0 2.5 2.9 2542 chr3L 7886520 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_10_7885001 chr3L_7885001 RAL-555 1041 chr3L 7916840 7916862 chr3L 7926011 7926032 roo 7 9171 3.0 3.5 3.2 1.7 9192 chr3L 7916840 3` UTR syd - chr3L 7921436 intron syd - chr3L 7926032 3` UTR syd - chr3L_7_7920001 chr3L_7920001 RAL-555 1042 chr3L 7985365 7985393 chr3L 7987693 7987721 NOF 8 2328 3.5 4.5 4.0 1.6 2356 chr3L 7985365 intron nmo + chr3L 7986543 intron nmo + chr3L 7987721 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-555 1043 chr3L 8011213 8011221 chr3L 8011860 8011866 4 646 1.5 3.0 2.2 1.2 653 chr3L 8011213 intron nmo + chr3L 8011540 intron nmo + chr3L 8011866 intron nmo + chr3L_4_8010001 chr3L_8010001 RAL-555 1044 chr3L 8149763 8149774 chr3L 8149869 8149880 5 106 1.5 1.5 1.5 2.0 117 chr3L 8149763 intron CG13676 - chr3L 8149822 intron CG13676 - chr3L 8149880 intron CG13676 - chr3L_5_8145001 chr3L_8145001 RAL-555 1045 chr3L 8167072 8167079 chr3L 8167166 8167173 4 94 3.0 3.0 3.0 1.0 101 chr3L 8167072 intergenic not near genes chr3L 8167122 intergenic not near genes chr3L 8167173 intergenic not near genes chr3L_4_8165001 chr3L_8165001 RAL-555 1046 chr3L 8226721 8226747 chr3L 8226820 8226844 4 98 0.0 0.0 0.0 4.0 123 chr3L 8226721 intergenic not near genes chr3L 8226782 intergenic not near genes chr3L 8226844 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-555 1047 chr3L 8317591 8317596 chr3L 22908066 22908067 25 14590471 2.0 19.5 10.8 2.1 14590476 chr3L 8317591 intergenic not near genes chr3L 15612829 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_25_15610001 chr3L_15610001 RAL-555 1048 chr3L 8364527 8364533 chr3L 8364618 8364624 4 91 4.5 1.5 3.0 1.0 97 chr3L 8364527 intergenic not near genes chr3L 8364576 intergenic not near genes chr3L 8364624 intergenic not near genes chr3L_4_8360001 chr3L_8360001 RAL-555 1049 chr3L 8395836 8395862 chr3L 8395932 8395958 7 96 5.5 2.5 4.0 1.4 122 chr3L 8395836 intergenic CG7120 + chr3L 8395897 intergenic CG7120 + chr3L 8395958 intergenic CG7120 + chr3L_7_8395001 chr3L_8395001 RAL-555 1050 chr3L 8481796 8481805 chr3L 8490953 8490964 roo 5 9158 1.0 2.0 1.5 2.0 9168 chr3L 8481796 intron CG43163 - chr3L 8486380 intron CG43163 - chr3L 8490964 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-555 1051 chr3L 8498295 8498327 chr3L 8505762 8505793 blood 7 7467 0.0 3.5 1.8 2.5 7498 chr3L 8498295 intron CG43163 - chr3L 8502044 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_7_8500001 chr3L_8500001 RAL-555 1052 chr3L 8579853 8579880 chr3L 8579932 8579960 5 80 4.0 3.5 3.8 1.0 107 chr3L 8579853 intron CG43078 + chr3L 8579906 intron CG43078 + chr3L 8579960 intron CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-555 1053 chr3L 8589577 8589582 chr3L 8589664 8589669 4 87 3.5 1.0 2.2 1.2 92 chr3L 8589577 intron CG43078 + chr3L 8589623 intron CG43078 + chr3L 8589669 intron CG43078 + chr3L_4_8585001 chr3L_8585001 RAL-555 1054 chr3L 8619262 8619297 chr3L 8619338 8619373 12 76 0.0 2.5 1.2 5.5 111 chr3L 8619262 3` UTR S-Lap1 + chr3L 8619318 3` UTR S-Lap1 + chr3L 8619373 3` UTR S-Lap1 + chr3L_12_8615001 chr3L_8615001 RAL-555 1055 chr3L 8721204 8721209 chr3L 8721305 8721310 4 101 3.0 3.5 3.2 1.0 106 chr3L 8721204 5` UTR CG32022 - chr3L 8721257 5` UTR CG32022 - chr3L 8721310 intergenic CG6511 +,CG32022 - chr3L_4_8720001 chr3L_8720001 RAL-555 1056 chr3L 8772055 8772080 chr3L 8772133 8772158 10 78 2.0 2.0 2.0 3.3 103 chr3L 8772055 intron Fhos + chr3L 8772106 intron Fhos + chr3L 8772158 intron Fhos + chr3L_10_8770001 chr3L_8770001 RAL-555 1057 chr3L 8791267 8791295 chr3L 8796687 8796715 I-element 5 5420 1.5 2.0 1.8 1.8 5448 chr3L 8791267 exon Fhos + chr3L 8793991 intron Fhos + chr3L 8796715 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-555 1058 chr3L 8849210 8849242 chr3L 8849290 8849322 13 80 3.5 0.5 2.0 4.3 112 chr3L 8849210 intron dally + chr3L 8849266 intron dally + chr3L 8849322 intron dally + chr3L_13_8845001 chr3L_8845001 RAL-555 1059 chr3L 9003946 9003977 chr3L 9004029 9004062 14 84 3.5 1.5 2.5 4.0 116 chr3L 9003946 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_14_9000001 chr3L_9000001 RAL-555 1060 chr3L 9013691 9013692 chr3L 18417066 18417066 7 9403375 20.5 14.5 17.5 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-555 1061 chr3L 9024511 9024536 chr3L 9024591 9024616 6 80 1.5 1.5 1.5 2.4 105 chr3L 9024511 intergenic not near genes chr3L 9024564 intergenic not near genes chr3L 9024616 intergenic not near genes chr3L_6_9020001 chr3L_9020001 RAL-555 1062 chr3L 9047091 9047097 chr3L 9047178 9047184 4 87 2.0 0.0 1.0 2.0 93 chr3L 9047091 intergenic CG5144 + chr3L 9047138 intergenic CG5144 + chr3L 9047184 intergenic CG5144 + chr3L_4_9045001 chr3L_9045001 RAL-555 1063 chr3L 9076925 9076957 chr3L 9084485 9084517 412 9 7560 2.5 2.0 2.2 2.8 7592 chr3L 9076925 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084517 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-555 1064 chr3L 9130561 9130582 chr3L 9134321 9134342 412 13 3761 6.0 2.5 4.2 2.5 3781 chr3L 9130561 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_13_9130001 chr3L_9130001 RAL-555 1065 chr3L 9164696 9164731 chr3L 9166163 9166198 hobo 11 1467 1.5 1.5 1.5 4.4 1502 chr3L 9164696 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166198 intron Rdl - chr3L_11_9165001 chr3L_9165001 RAL-555 1066 chr3L 9191873 9191908 chr3L 9191963 9191998 9 90 3.0 3.0 3.0 2.2 125 chr3L 9191873 intergenic not near genes chr3L 9191936 intergenic not near genes chr3L 9191998 intergenic not near genes chr3L_9_9190001 chr3L_9190001 RAL-555 1067 chr3L 9219242 9219274 chr3L 9219914 9219941 jockey 8 671 4.5 3.0 3.8 1.7 699 chr3L 9219242 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219941 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-555 1068 chr3L 9359593 9359616 chr3L 9359683 9359707 9 90 2.0 2.0 2.0 3.0 114 chr3L 9359593 3` UTR CG32039 + chr3L 9359650 3` UTR CG32039 + chr3L 9359707 3` UTR CG32039 + chr3L_9_9355001 chr3L_9355001 RAL-555 1069 chr3L 9443508 9443534 chr3L 9445299 9445325 S-element 7 1791 2.5 3.0 2.8 1.8 1817 chr3L 9443508 intron CG33926 + chr3L 9444416 intron CG33926 + chr3L 9445325 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-555 1070 chr3L 9501700 9501733 chr3L 9502186 9502216 roo 12 486 2.5 3.0 2.8 3.2 516 chr3L 9501700 intron path - chr3L 9501958 intron path - chr3L 9502216 intron path - chr3L_12_9500001 chr3L_9500001 RAL-555 1071 chr3L 9533754 9533786 chr3L 9541312 9541344 412 6 7559 0.0 3.0 1.5 2.4 7590 chr3L 9533754 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541344 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-555 1072 chr3L 9559405 9559412 chr3L 9559540 9559547 4 135 1.0 6.5 3.8 0.8 142 chr3L 9559405 intron CG42673 + chr3L 9559476 intron CG42673 + chr3L 9559547 intron CG42673 + chr3L_4_9555001 chr3L_9555001 RAL-555 1073 chr3L 9571901 9571937 chr3L 9572249 9572285 jockey 14 348 3.0 4.5 3.8 2.9 384 chr3L 9571901 intron CG42673 + chr3L 9572093 intron CG42673 + chr3L 9572285 intron CG42673 + chr3L_14_9570001 chr3L_9570001 RAL-555 1074 chr3L 9575909 9575940 chr3L 9580989 9581018 jockey 13 5079 2.5 5.5 4.0 2.6 5109 chr3L 9575909 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581018 intron CG42673 + chr3L_13_9575001 chr3L_9575001 RAL-555 1075 chr3L 9596769 9596797 chr3L 9596848 9596876 11 78 0.0 2.5 1.2 5.0 107 chr3L 9596769 intergenic CG42673 + chr3L 9596822 intergenic CG42673 + chr3L 9596876 intergenic CG42673 + chr3L_11_9595001 chr3L_9595001 RAL-555 1076 chr3L 9613888 9613923 chr3L 9613975 9614010 14 87 2.5 2.0 2.2 4.4 122 chr3L 9613888 3` UTR CG3280 + chr3L 9613949 intergenic CG3280 + chr3L 9614010 intergenic CG3280 + chr3L_14_9610001 chr3L_9610001 RAL-555 1077 chr3L 9637854 9637885 chr3L 9637936 9637967 12 82 3.5 3.5 3.5 2.7 113 chr3L 9637854 intron fry - chr3L 9637910 intron fry - chr3L 9637967 intron fry - chr3L_12_9635001 chr3L_9635001 RAL-555 1078 chr3L 9639033 9639062 chr3L 9639118 9639147 6 85 0.0 3.0 1.5 2.4 114 chr3L 9639033 intron fry - chr3L 9639090 intron fry - chr3L 9639147 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-555 1079 chr3L 9646476 9646482 chr3L 9646601 9646607 4 125 6.0 0.0 3.0 1.0 131 chr3L 9646476 intron,intron fry -,CG33696 + chr3L 9646542 intron,intron fry -,CG33696 + chr3L 9646607 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-555 1080 chr3L 9684201 9684220 chr3L 9684300 9684316 4 98 6.5 0.0 3.2 1.0 115 chr3L 9684201 3` UTR CG6767 - chr3L 9684258 3` UTR CG6767 - chr3L 9684316 3` UTR CG6767 - chr3L_4_9680001 chr3L_9680001 RAL-555 1081 chr3L 9775113 9775143 chr3L 9775194 9775224 10 81 3.5 2.5 3.0 2.5 111 chr3L 9775113 intron CG8177 + chr3L 9775168 intron CG8177 + chr3L 9775224 intron CG8177 + chr3L_10_9775001 chr3L_9775001 RAL-555 1082 chr3L 9831708 9831738 chr3L 9831789 9831819 8 81 0.0 5.0 2.5 2.3 111 chr3L 9831708 intron CG43897 + chr3L 9831764 intron CG43897 + chr3L 9831819 intron CG43897 + chr3L_8_9830001 chr3L_9830001 RAL-555 1083 chr3L 9871190 9871214 chr3L 9871286 9871310 11 96 3.0 4.5 3.8 2.3 120 chr3L 9871190 intergenic not near genes chr3L 9871250 intergenic not near genes chr3L 9871310 intergenic not near genes chr3L_11_9870001 chr3L_9870001 RAL-555 1084 chr3L 9929672 9929699 chr3L 9938450 9938479 roo 10 8780 3.0 5.0 4.0 2.0 8807 chr3L 9929672 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_10_9930001 chr3L_9930001 RAL-555 1085 chr3L 9990495 9990530 chr3L 9990599 9990632 6 104 1.0 1.5 1.2 2.7 137 chr3L 9990495 intron dpr6 + chr3L 9990564 intron dpr6 + chr3L 9990632 intron dpr6 + chr3L_6_9990001 chr3L_9990001 RAL-555 1086 chr3L 10003161 10003174 chr3L 10003256 10003271 4 96 4.5 3.5 4.0 0.8 110 chr3L 10003161 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003271 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-555 1087 chr3L 10099087 10099115 chr3L 10099172 10099200 8 85 2.5 2.0 2.2 2.5 113 chr3L 10099087 intron dpr6 + chr3L 10099144 intron dpr6 + chr3L 10099200 intron dpr6 + chr3L_8_10095001 chr3L_10095001 RAL-555 1088 chr3L 10222743 10222775 chr3L 10222823 10222855 4 80 0.0 0.0 0.0 4.0 112 chr3L 10222743 intron scramb1 - chr3L 10222799 intron scramb1 - chr3L 10222855 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-555 1089 chr3L 10284135 10284160 chr3L 10284217 10284243 15 83 4.5 5.5 5.0 2.5 108 chr3L 10284135 intergenic not near genes chr3L 10284189 intergenic not near genes chr3L 10284243 intergenic not near genes chr3L_15_10280001 chr3L_10280001 RAL-555 1090 chr3L 10308741 10308775 chr3L 10308816 10308852 16 77 0.5 3.5 2.0 5.3 111 chr3L 10308741 intergenic not near genes chr3L 10308796 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_16_10305001 chr3L_10305001 RAL-555 1091 chr3L 10381714 10381723 chr3L 10381799 10381807 5 84 2.5 2.5 2.5 1.4 93 chr3L 10381714 intergenic not near genes chr3L 10381760 intergenic not near genes chr3L 10381807 intergenic not near genes chr3L_5_10380001 chr3L_10380001 RAL-555 1092 chr3L 10386390 10386418 chr3L 10386467 10386495 12 76 3.5 5.5 4.5 2.2 105 chr3L 10386390 intergenic CR45245 + chr3L 10386442 intergenic CR45245 + chr3L 10386495 5` UTR CR45245 + chr3L_12_10385001 chr3L_10385001 RAL-555 1093 chr3L 10414940 10414974 chr3L 10417312 10417346 Doc 14 2372 4.0 5.5 4.8 2.4 2406 chr3L 10414940 intergenic CG12362 + chr3L 10416143 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-555 1094 chr3L 10455807 10455818 chr3L 10455932 10455943 5 125 3.5 1.5 2.5 1.4 136 chr3L 10455807 intergenic not near genes chr3L 10455875 intergenic not near genes chr3L 10455943 intergenic not near genes chr3L_5_10455001 chr3L_10455001 RAL-555 1095 chr3L 10477909 10477943 chr3L 10477989 10478023 5 80 1.0 2.0 1.5 2.0 114 chr3L 10477909 intergenic not near genes chr3L 10477966 intergenic not near genes chr3L 10478023 intergenic not near genes chr3L_5_10475001 chr3L_10475001 RAL-555 1096 chr3L 10553496 10553514 chr3L 10553693 10553711 5 197 5.0 1.5 3.2 1.2 215 chr3L 10553496 intron A2bp1 + chr3L 10553604 intron A2bp1 + chr3L 10553711 intron A2bp1 + chr3L_5_10550001 chr3L_10550001 RAL-555 1097 chr3L 10601089 10601093 chr3L 22908066 22908066 4 12306974 11.0 19.5 15.2 0.2 12306977 chr3L 10601089 intergenic not near genes chr3L 16754578 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_16750001 chr3L_16750001 RAL-555 1098 chr3L 10621853 10621871 chr3L 10621940 10621957 5 87 1.0 3.5 2.2 1.6 104 chr3L 10621853 intergenic not near genes chr3L 10621905 intergenic not near genes chr3L 10621957 intergenic not near genes chr3L_5_10620001 chr3L_10620001 RAL-555 1099 chr3L 10658077 10658206 chr3L 10658154 10658333 17 95 2.0 2.0 2.0 5.7 256 chr3L 10658077 intron CG32066 - chr3L 10658205 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_17_10655001 chr3L_10655001 RAL-555 1100 chr3L 10762834 10762862 chr3L 10762918 10762946 11 83 2.0 3.0 2.5 3.1 112 chr3L 10762834 intergenic not near genes chr3L 10762890 intergenic not near genes chr3L 10762946 intergenic not near genes chr3L_11_10760001 chr3L_10760001 RAL-555 1101 chr3L 10777250 10777273 chr3L 10777867 10777890 8 617 4.0 3.5 3.8 1.7 640 chr3L 10777250 intergenic not near genes chr3L 10777570 intergenic not near genes chr3L 10777890 intergenic not near genes chr3L_8_10775001 chr3L_10775001 RAL-555 1102 chr3L 10851234 10851238 chr3L 22908066 22908067 7 12056830 12.5 19.5 16.0 0.4 12056833 chr3L 10851234 intergenic not near genes chr3L 16879650 intron Lmpt + chr3L 22908067 intergenic not near genes chr3L_7_16875001 chr3L_16875001 RAL-555 1103 chr3L 11105303 11105329 chr3L 11107014 11107040 X-element 6 1711 3.5 2.0 2.8 1.6 1737 chr3L 11105303 intergenic not near genes chr3L 11106172 intergenic not near genes chr3L 11107040 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-555 1104 chr3L 11121587 11121617 chr3L 11122994 11123025 17 1408 21.5 28.5 25.0 0.7 1438 chr3L 11121587 exon mRpL2 + chr3L 11122306 exon Ufd1-like - chr3L 11123025 exon Ufd1-like - chr3L_17_11120001 chr3L_11120001 RAL-555 1105 chr3L 11135530 11135806 chr3L 11135760 11135891 15 123 0.0 0.0 0.0 15.0 361 chr3L 11135530 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_15_11135001 chr3L_11135001 RAL-555 1106 chr3L 11184754 11184774 chr3L 11184831 11184850 5 77 2.0 2.5 2.2 1.6 96 chr3L 11184754 intron GlcAT-P - chr3L 11184802 intron GlcAT-P - chr3L 11184850 intron GlcAT-P - chr3L_5_11180001 chr3L_11180001 RAL-555 1107 chr3L 11264461 11264494 chr3L 11271415 11271446 17.6 7 6953 1.0 3.5 2.2 2.2 6985 chr3L 11264461 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271446 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-555 1108 chr3L 11277464 11277484 chr3L 11278459 11278479 Rt1a 7 994 2.0 3.0 2.5 2.0 1015 chr3L 11277464 intergenic not near genes chr3L 11277972 intergenic not near genes chr3L 11278479 intergenic not near genes chr3L_7_11275001 chr3L_11275001 RAL-555 1109 chr3L 11279744 11279746 chr3L 11279814 11279820 4 75 1.0 0.0 0.5 2.7 76 chr3L 11279744 intergenic not near genes chr3L 11279782 intergenic not near genes chr3L 11279820 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-555 1110 chr3L 11300553 11300584 chr3L 11300634 11300666 10 82 3.5 3.0 3.2 2.4 113 chr3L 11300553 intergenic not near genes chr3L 11300610 intergenic not near genes chr3L 11300666 intergenic not near genes chr3L_10_11300001 chr3L_11300001 RAL-555 1111 chr3L 11305792 11305819 chr3L 22908066 22908066 11 11602262 4.5 19.5 12.0 0.8 11602274 chr3L 11305792 intergenic not near genes chr3L 17106929 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_11_17105001 chr3L_17105001 RAL-555 1112 chr3L 11329695 11329714 chr3L 11332899 11332919 jockey 4 3204 3.0 2.5 2.8 1.1 3224 chr3L 11329695 intergenic not near genes chr3L 11331307 intergenic not near genes chr3L 11332919 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-555 1113 chr3L 11334130 11334146 chr3L 11334218 11334234 5 88 2.5 3.0 2.8 1.3 104 chr3L 11334130 intergenic not near genes chr3L 11334182 intergenic not near genes chr3L 11334234 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-555 1114 chr3L 11435567 11435591 chr3L 11435736 11435760 13 169 2.0 2.5 2.2 4.1 193 chr3L 11435567 intergenic CR44548 +,CG6149 - chr3L 11435664 5` UTR CR44548 + chr3L 11435760 5` UTR CR44548 + chr3L_13_11435001 chr3L_11435001 RAL-555 1115 chr3L 11579561 11579583 chr3L 11579667 11579689 8 106 0.5 2.5 1.5 3.2 128 chr3L 11579561 intergenic CG43390 - chr3L 11579625 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_8_11575001 chr3L_11575001 RAL-555 1116 chr3L 11678108 11678119 chr3L 11678195 11678206 4 87 0.0 3.5 1.8 1.4 98 chr3L 11678108 intron CG32085 - chr3L 11678157 intron CG32085 - chr3L 11678206 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-555 1117 chr3L 11723082 11723116 chr3L 11727877 11727911 Doc 12 4795 2.5 3.0 2.8 3.2 4829 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-555 1118 chr3L 11744012 11744034 chr3L 11744120 11744142 9 108 3.0 0.0 1.5 3.6 130 chr3L 11744012 exon CG6024 - chr3L 11744077 intron CG6024 - chr3L 11744142 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-555 1119 chr3L 11777678 11777678 chr3L 12163304 12163305 4 385627 10.5 17.5 14.0 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-555 1120 chr3L 11864559 11864582 chr3L 11865854 11865877 pogo 5 1295 3.5 5.5 4.5 0.9 1318 chr3L 11864559 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-555 1121 chr3L 11974335 11974367 chr3L 11974415 11974447 10 80 1.5 3.0 2.2 3.1 112 chr3L 11974335 intergenic not near genes chr3L 11974391 intergenic not near genes chr3L 11974447 intergenic CG14125 + chr3L_10_11970001 chr3L_11970001 RAL-555 1122 chr3L 12026437 12026445 chr3L 12026629 12026639 4 193 3.5 4.0 3.8 0.8 202 chr3L 12026437 intron rols - chr3L 12026538 intron rols - chr3L 12026639 intron rols - chr3L_4_12025001 chr3L_12025001 RAL-555 1123 chr3L 12092027 12092060 chr3L 12092109 12092142 12 82 3.5 3.5 3.5 2.7 115 chr3L 12092027 intergenic not near genes chr3L 12092084 intergenic not near genes chr3L 12092142 intergenic not near genes chr3L_12_12090001 chr3L_12090001 RAL-555 1124 chr3L 12099312 12099324 chr3L 12099592 12099605 8 281 5.0 3.5 4.2 1.5 293 chr3L 12099312 intergenic not near genes chr3L 12099458 intergenic not near genes chr3L 12099605 intergenic not near genes chr3L_8_12095001 chr3L_12095001 RAL-555 1125 chr3L 12104833 12104846 chr3L 12104909 12104924 8 78 0.0 2.0 1.0 4.0 91 chr3L 12104833 intergenic not near genes chr3L 12104878 intergenic not near genes chr3L 12104924 intergenic not near genes chr3L_8_12100001 chr3L_12100001 RAL-555 1126 chr3L 12170791 12170824 chr3L 12170873 12170906 9 82 0.0 3.5 1.8 3.2 115 chr3L 12170791 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170906 intron Rh7 - chr3L_9_12170001 chr3L_12170001 RAL-555 1127 chr3L 12204386 12204418 chr3L 12204477 12204508 11 91 2.0 4.5 3.2 2.6 122 chr3L 12204386 3` UTR CG5626 - chr3L 12204447 intron CG5626 - chr3L 12204508 intron CG5626 - chr3L_11_12200001 chr3L_12200001 RAL-555 1128 chr3L 12303761 12303786 chr3L 12304060 12304087 5 301 0.5 2.5 1.5 2.0 326 chr3L 12303761 intergenic not near genes chr3L 12303924 intergenic not near genes chr3L 12304087 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-555 1129 chr3L 12312484 12312510 chr3L 12312562 12312588 18 77 1.0 4.5 2.8 4.7 104 chr3L 12312484 intergenic not near genes chr3L 12312536 intergenic not near genes chr3L 12312588 intergenic not near genes chr3L_18_12310001 chr3L_12310001 RAL-555 1130 chr3L 12353923 12353950 chr3L 12354012 12354039 9 89 1.0 3.5 2.2 2.8 116 chr3L 12353923 intergenic not near genes chr3L 12353981 intergenic not near genes chr3L 12354039 intergenic not near genes chr3L_9_12350001 chr3L_12350001 RAL-555 1131 chr3L 12369537 12369569 chr3L 12369626 12369659 9 90 2.5 2.5 2.5 2.6 122 chr3L 12369537 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369659 intron Ncc69 - chr3L_9_12365001 chr3L_12365001 RAL-555 1132 chr3L 12392449 12392473 chr3L 12392568 12392591 5 119 2.0 1.0 1.5 2.0 142 chr3L 12392449 intergenic not near genes chr3L 12392520 intergenic not near genes chr3L 12392591 intergenic not near genes chr3L_5_12390001 chr3L_12390001 RAL-555 1133 chr3L 12394532 12394533 chr3L 22908066 22908067 8 10513534 14.5 19.5 17.0 0.4 10513535 chr3L 12394532 intron CG32104 - chr3L 17651300 intron,intron Ndfip -,Krn - chr3L 22908067 intergenic not near genes chr3L_8_17650001 chr3L_17650001 RAL-555 1134 chr3L 12413039 12413070 chr3L 12413117 12413148 9 78 3.0 1.5 2.2 2.8 109 chr3L 12413039 intron CG32103 - chr3L 12413094 intron CG32103 - chr3L 12413148 intron CG32103 - chr3L_9_12410001 chr3L_12410001 RAL-555 1135 chr3L 12458487 12458496 chr3L 12458585 12458594 4 98 1.0 2.5 1.8 1.4 107 chr3L 12458487 intergenic not near genes chr3L 12458540 intergenic not near genes chr3L 12458594 intergenic not near genes chr3L_4_12455001 chr3L_12455001 RAL-555 1136 chr3L 12460318 12460339 chr3L 12460394 12460416 5 77 0.0 1.5 0.8 2.8 98 chr3L 12460318 intergenic not near genes chr3L 12460367 intergenic not near genes chr3L 12460416 intergenic not near genes chr3L_5_12460001 chr3L_12460001 RAL-555 1137 chr3L 12578784 12578791 chr3L 22908066 22908067 5 10329280 10.5 19.5 15.0 0.3 10329283 chr3L 12578784 intergenic not near genes chr3L 17743426 intron Ccn + chr3L 22908067 intergenic not near genes chr3L_5_17740001 chr3L_17740001 RAL-555 1138 chr3L 12610999 12611021 chr3L 12611245 12611267 5 246 2.0 2.5 2.2 1.6 268 chr3L 12610999 intron caup + chr3L 12611133 intron caup + chr3L 12611267 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-555 1139 chr3L 11777678 11777678 chr3L 12638618 12638621 7 860942 10.5 15.0 12.8 0.5 860943 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208150 intron app - chr3L 12638621 intron CR32111 + chr3L_7_12205001 chr3L_12205001 RAL-555 1140 chr3L 12647948 12647965 chr3L 12648024 12648041 8 76 3.0 2.0 2.5 2.3 93 chr3L 12647948 5` UTR CR32111 + chr3L 12647994 5` UTR CR32111 + chr3L 12648041 5` UTR CR32111 + chr3L_8_12645001 chr3L_12645001 RAL-555 1141 chr3L 12868032 12868054 chr3L 12868118 12868140 11 85 2.0 1.5 1.8 3.9 108 chr3L 12868032 intergenic not near genes chr3L 12868086 intergenic not near genes chr3L 12868140 intergenic not near genes chr3L_11_12865001 chr3L_12865001 RAL-555 1142 chr3L 12874925 12874961 chr3L 12877217 12877253 jockey 6 2292 1.5 1.5 1.5 2.4 2328 chr3L 12874925 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-555 1143 chr3L 12919273 12919304 chr3L 12924746 12924777 Rt1c 11 5472 2.5 1.5 2.0 3.7 5504 chr3L 12919273 intergenic not near genes chr3L 12922025 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_11_12920001 chr3L_12920001 RAL-555 1144 chr3L 12937604 12937612 chr3L 12937679 12937688 6 76 0.5 4.0 2.2 1.9 84 chr3L 12937604 intergenic not near genes chr3L 12937646 intergenic not near genes chr3L 12937688 intergenic not near genes chr3L_6_12935001 chr3L_12935001 RAL-555 1145 chr3L 12957785 12957819 chr3L 12962267 12962301 copia 9 4482 3.0 5.5 4.2 1.7 4516 chr3L 12957785 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-555 1146 chr3L 12980528 12980551 chr3L 12980616 12980639 5 88 1.5 0.0 0.8 2.8 111 chr3L 12980528 intergenic not near genes chr3L 12980584 intergenic not near genes chr3L 12980639 intergenic not near genes chr3L_5_12980001 chr3L_12980001 RAL-555 1147 chr3L 13008821 13008826 chr3L 13008975 13008985 5 158 1.5 6.5 4.0 1.0 164 chr3L 13008821 exon CG14117 + chr3L 13008903 intron CG14117 + chr3L 13008985 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-555 1148 chr3L 13009862 13009862 chr3L 22908066 22908067 14 9898204 11.0 19.5 15.2 0.9 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_14_17955001 chr3L_17955001 RAL-555 1149 chr3L 13035466 13035471 chr3L 13035558 13035564 4 92 1.0 3.5 2.2 1.2 98 chr3L 13035466 intron CG17672 + chr3L 13035515 intron CG17672 + chr3L 13035564 intron CG17672 + chr3L_4_13035001 chr3L_13035001 RAL-555 1150 chr3L 13073800 13073835 chr3L 13073902 13073938 14 103 1.0 1.0 1.0 7.0 138 chr3L 13073800 intergenic not near genes chr3L 13073869 intergenic not near genes chr3L 13073938 intergenic not near genes chr3L_14_13070001 chr3L_13070001 RAL-555 1151 chr3L 13085055 13085085 chr3L 13085133 13085163 7 79 0.5 3.5 2.0 2.3 108 chr3L 13085055 intergenic not near genes chr3L 13085109 intergenic not near genes chr3L 13085163 intergenic not near genes chr3L_7_13085001 chr3L_13085001 RAL-555 1152 chr3L 13142148 13142174 chr3L 13142261 13142287 8 112 2.0 5.0 3.5 1.8 139 chr3L 13142148 intergenic not near genes chr3L 13142218 intergenic not near genes chr3L 13142287 intergenic not near genes chr3L_8_13140001 chr3L_13140001 RAL-555 1153 chr3L 13144116 13144149 chr3L 13144193 13144226 10 77 2.5 2.5 2.5 2.9 110 chr3L 13144116 intergenic not near genes chr3L 13144171 intergenic not near genes chr3L 13144226 intergenic not near genes chr3L_10_13140001 chr3L_13140001 RAL-555 1154 chr3L 13161815 13161832 chr3L 13162101 13162118 5 285 2.5 2.0 2.2 1.6 303 chr3L 13161815 intergenic not near genes chr3L 13161966 intergenic not near genes chr3L 13162118 intergenic not near genes chr3L_5_13160001 chr3L_13160001 RAL-555 1155 chr3L 13301249 13301277 chr3L 13301331 13301359 8 82 0.0 0.0 0.0 8.0 110 chr3L 13301249 intergenic SP + chr3L 13301304 intergenic SP + chr3L 13301359 intergenic SP + chr3L_8_13300001 chr3L_13300001 RAL-555 1156 chr3L 13311797 13311820 chr3L 13311875 13311898 4 78 1.5 2.0 1.8 1.4 101 chr3L 13311797 intergenic not near genes chr3L 13311848 intergenic not near genes chr3L 13311898 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-555 1157 chr3L 13400526 13400546 chr3L 13400602 13400622 6 76 3.5 2.5 3.0 1.5 96 chr3L 13400526 intron sens - chr3L 13400574 intron sens - chr3L 13400622 intron sens - chr3L_6_13400001 chr3L_13400001 RAL-555 1158 chr3L 13525154 13525190 chr3L 13532950 13532986 roo 23 7796 3.5 5.5 4.5 4.2 7832 chr3L 13525154 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_23_13525001 chr3L_13525001 RAL-555 1159 chr3L 13582216 13582243 chr3L 13582307 13582333 8 91 3.0 4.5 3.8 1.7 117 chr3L 13582216 intron bru-3 - chr3L 13582274 intron bru-3 - chr3L 13582333 intron bru-3 - chr3L_8_13580001 chr3L_13580001 RAL-555 1160 chr3L 13598216 13598225 chr3L 13598293 13598302 4 77 4.5 0.0 2.2 1.2 86 chr3L 13598216 intron bru-3 - chr3L 13598259 intron bru-3 - chr3L 13598302 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-555 1161 chr3L 13626691 13626719 chr3L 13626774 13626803 10 84 2.0 3.0 2.5 2.9 112 chr3L 13626691 intron bru-3 - chr3L 13626747 intron bru-3 - chr3L 13626803 intron bru-3 - chr3L_10_13625001 chr3L_13625001 RAL-555 1162 chr3L 13629529 13629549 chr3L 13629639 13629659 6 110 1.0 1.5 1.2 2.7 130 chr3L 13629529 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629659 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-555 1163 chr3L 13633415 13633441 chr3L 13633769 13633795 9 354 2.5 4.0 3.2 2.1 380 chr3L 13633415 intron bru-3 - chr3L 13633605 intron bru-3 - chr3L 13633795 intron bru-3 - chr3L_9_13630001 chr3L_13630001 RAL-555 1164 chr3L 13648887 13648919 chr3L 13648977 13649009 4 90 1.5 1.5 1.5 1.6 122 chr3L 13648887 intron bru-3 - chr3L 13648948 intron bru-3 - chr3L 13649009 intron bru-3 - chr3L_4_13645001 chr3L_13645001 RAL-555 1165 chr3L 13677530 13677561 chr3L 13677607 13677638 6 77 1.5 2.0 1.8 2.1 108 chr3L 13677530 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677638 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-555 1166 chr3L 13745298 13745303 chr3L 13745382 13745392 4 88 0.5 0.0 0.2 3.3 94 chr3L 13745298 intron bru-3 - chr3L 13745345 intron bru-3 - chr3L 13745392 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-555 1167 chr3L 13755918 13755956 chr3L 13756005 13756036 5 86 0.0 1.5 0.8 2.8 118 chr3L 13755918 intron bru-3 - chr3L 13755977 intron bru-3 - chr3L 13756036 intron bru-3 - chr3L_5_13755001 chr3L_13755001 RAL-555 1168 chr3L 13804546 13804559 chr3L 13822832 13822845 roo 6 18286 3.5 4.0 3.8 1.2 18299 chr3L 13804546 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822845 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-555 1169 chr3L 13838941 13838959 chr3L 13839160 13839177 7 219 2.5 3.0 2.8 1.8 236 chr3L 13838941 intergenic not near genes chr3L 13839059 intergenic not near genes chr3L 13839177 intergenic not near genes chr3L_7_13835001 chr3L_13835001 RAL-555 1170 chr3L 14036678 14036698 chr3L 14036771 14036788 5 92 3.5 2.0 2.8 1.3 110 chr3L 14036678 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036733 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036788 3` UTR pncr014:3L - chr3L_5_14035001 chr3L_14035001 RAL-555 1171 chr3L 14061668 14061674 chr3L 14061757 14061763 5 89 3.0 0.0 1.5 2.0 95 chr3L 14061668 intron CG32138 + chr3L 14061716 intron CG32138 + chr3L 14061763 intron CG32138 + chr3L_5_14060001 chr3L_14060001 RAL-555 1172 chr3L 14118949 14118964 chr3L 14119041 14119057 8 92 4.0 4.0 4.0 1.6 108 chr3L 14118949 intron Sox21b - chr3L 14119003 intron Sox21b - chr3L 14119057 intron Sox21b - chr3L_8_14115001 chr3L_14115001 RAL-555 1173 chr3L 14144139 14144150 chr3L 14144217 14144228 5 78 0.5 3.5 2.0 1.7 89 chr3L 14144139 intergenic not near genes chr3L 14144184 intergenic not near genes chr3L 14144228 intergenic not near genes chr3L_5_14140001 chr3L_14140001 RAL-555 1174 chr3L 14194729 14194739 chr3L 14194805 14194815 6 76 4.5 1.0 2.8 1.6 86 chr3L 14194729 intron nuf + chr3L 14194772 intron nuf + chr3L 14194815 intron nuf + chr3L_6_14190001 chr3L_14190001 RAL-555 1175 chr3L 14196416 14196446 chr3L 14196501 14196531 9 85 0.5 3.0 1.8 3.2 115 chr3L 14196416 intron nuf + chr3L 14196474 intron nuf + chr3L 14196531 intron nuf + chr3L_9_14195001 chr3L_14195001 RAL-555 1176 chr3L 14239988 14240003 chr3L 14240085 14240100 5 97 0.0 2.5 1.2 2.3 112 chr3L 14239988 intergenic not near genes chr3L 14240044 intergenic not near genes chr3L 14240100 intergenic not near genes chr3L_5_14240001 chr3L_14240001 RAL-555 1177 chr3L 14245566 14245594 chr3L 14245659 14245686 1360 12 93 4.5 1.0 2.8 3.2 120 chr3L 14245566 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_12_14245001 chr3L_14245001 RAL-555 1178 chr3L 14267372 14267399 chr3L 14271812 14271839 F-element 6 4440 2.5 2.5 2.5 1.7 4467 chr3L 14267372 intergenic not near genes chr3L 14269606 intergenic not near genes chr3L 14271839 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-555 1179 chr3L 14282598 14282605 chr3L 14282678 14282685 4 80 0.0 7.0 3.5 0.9 87 chr3L 14282598 intron fz + chr3L 14282642 intron fz + chr3L 14282685 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-555 1180 chr3L 14295988 14296003 chr3L 14296474 14296488 roo 5 486 3.5 5.0 4.2 1.0 500 chr3L 14295988 intron fz + chr3L 14296238 intron fz + chr3L 14296488 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-555 1181 chr3L 14335895 14335905 chr3L 14337341 14337351 8 1446 12.5 23.5 18.0 0.4 1456 chr3L 14335895 intron fz + chr3L 14336623 intron fz + chr3L 14337351 intron fz + chr3L_8_14335001 chr3L_14335001 RAL-555 1182 chr3L 14399176 14399193 chr3L 14399265 14399282 4 89 3.0 0.0 1.5 1.6 106 chr3L 14399176 intergenic not near genes chr3L 14399229 intergenic not near genes chr3L 14399282 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-555 1183 chr3L 14411864 14411896 chr3L 14411943 14411975 12 79 3.0 1.0 2.0 4.0 111 chr3L 14411864 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411975 intron CG3919 + chr3L_12_14410001 chr3L_14410001 RAL-555 1184 chr3L 14468447 14468475 chr3L 14473653 14473680 copia 7 5206 2.5 1.5 2.0 2.3 5233 chr3L 14468447 intron bbg - chr3L 14471064 intron bbg - chr3L 14473680 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-555 1185 chr3L 14514693 14514696 chr3L 22908066 22908066 Stalker2 11 8393372 6.5 19.5 13.0 0.8 8393373 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_11_18710001 chr3L_18710001 RAL-555 1186 chr3L 14522112 14522129 chr3L 14522211 14522228 7 99 2.0 3.0 2.5 2.0 116 chr3L 14522112 intron bbg - chr3L 14522170 intron bbg - chr3L 14522228 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-555 1187 chr3L 14585611 14585638 chr3L 14585689 14585715 11 78 2.5 4.5 3.5 2.4 104 chr3L 14585611 intron HGTX - chr3L 14585663 intron HGTX - chr3L 14585715 intron HGTX - chr3L_11_14585001 chr3L_14585001 RAL-555 1188 chr3L 14635709 14635711 chr3L 14635787 14635789 4 78 7.0 3.5 5.2 0.6 80 chr3L 14635709 intron dlp + chr3L 14635749 intron dlp + chr3L 14635789 intron dlp + chr3L_4_14635001 chr3L_14635001 RAL-555 1189 chr3L 14646963 14646987 chr3L 14647040 14647065 6 77 0.0 6.0 3.0 1.5 102 chr3L 14646963 intron dlp + chr3L 14647014 intron dlp + chr3L 14647065 intron dlp + chr3L_6_14645001 chr3L_14645001 RAL-555 1190 chr3L 14654369 14654390 chr3L 14654449 14654470 9 80 2.5 4.0 3.2 2.1 101 chr3L 14654369 intron dlp + chr3L 14654420 intron dlp + chr3L 14654470 intron dlp + chr3L_9_14650001 chr3L_14650001 RAL-555 1191 chr3L 14662170 14662195 chr3L 14662262 14662287 12 92 2.5 2.5 2.5 3.4 117 chr3L 14662170 intron dlp + chr3L 14662228 intron dlp + chr3L 14662287 intron dlp + chr3L_12_14660001 chr3L_14660001 RAL-555 1192 chr3L 14676038 14676066 chr3L 14676116 14676146 8 80 1.0 3.5 2.2 2.5 108 chr3L 14676038 intron,intron ome +,CG4914 - chr3L 14676092 intron,intron ome +,CG4914 - chr3L 14676146 intron,intron ome +,CG4914 - chr3L_8_14675001 chr3L_14675001 RAL-555 1193 chr3L 14721187 14721210 chr3L 14723030 14723053 Rt1c 5 1843 6.5 5.0 5.8 0.7 1866 chr3L 14721187 intron ome + chr3L 14722120 intron ome + chr3L 14723053 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-555 1194 chr3L 14741142 14741164 chr3L 14741219 14741242 13 77 5.0 5.0 5.0 2.2 100 chr3L 14741142 intron ome + chr3L 14741192 intron ome + chr3L 14741242 intron ome + chr3L_13_14740001 chr3L_14740001 RAL-555 1195 chr3L 14834121 14834151 chr3L 14834230 14834260 12 109 1.0 3.5 2.2 3.8 139 chr3L 14834121 intron CG17839 + chr3L 14834190 intron CG17839 + chr3L 14834260 intron CG17839 + chr3L_12_14830001 chr3L_14830001 RAL-555 1196 chr3L 14838629 14838652 chr3L 14838709 14838732 7 80 4.0 4.0 4.0 1.4 103 chr3L 14838629 intron CG17839 + chr3L 14838680 intron CG17839 + chr3L 14838732 intron CG17839 + chr3L_7_14835001 chr3L_14835001 RAL-555 1197 chr3L 14844259 14844290 chr3L 14844350 14844379 10 90 1.5 0.5 1.0 5.0 120 chr3L 14844259 intron CG17839 + chr3L 14844319 intron CG17839 + chr3L 14844379 intron CG17839 + chr3L_10_14840001 chr3L_14840001 RAL-555 1198 chr3L 14912186 14912215 chr3L 14912268 14912296 6 82 3.5 5.5 4.5 1.1 110 chr3L 14912186 intron DCX-EMAP + chr3L 14912241 intron DCX-EMAP + chr3L 14912296 intron DCX-EMAP + chr3L_6_14910001 chr3L_14910001 RAL-555 1199 chr3L 14917666 14917694 chr3L 14917749 14917777 9 83 2.0 4.0 3.0 2.2 111 chr3L 14917666 intron DCX-EMAP + chr3L 14917722 intron DCX-EMAP + chr3L 14917777 intron DCX-EMAP + chr3L_9_14915001 chr3L_14915001 RAL-555 1200 chr3L 14973633 14973663 chr3L 14973713 14973742 7 80 1.5 5.5 3.5 1.6 109 chr3L 14973633 intergenic Brd + chr3L 14973688 intergenic Brd + chr3L 14973742 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-555 1201 chr3L 15048120 15048150 chr3L 15048484 15048514 15 364 24.5 14.5 19.5 0.7 394 chr3L 15048120 intron Sytbeta - chr3L 15048317 intron Sytbeta - chr3L 15048514 intron Sytbeta - chr3L_15_15045001 chr3L_15045001 RAL-555 1202 chr3L 15063700 15063703 chr3L 22908066 22908067 6 7844365 13.5 19.5 16.5 0.3 7844367 chr3L 15063700 intron Sytbeta - chr3L 18985884 intergenic CG11619 -,CG14075 + chr3L 22908067 intergenic not near genes chr3L_6_18985001 chr3L_18985001 RAL-555 1203 chr3L 15085048 15085083 chr3L 15086214 15086249 1360 11 1166 3.5 2.0 2.8 2.9 1201 chr3L 15085048 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086249 intron cp309 - chr3L_11_15085001 chr3L_15085001 RAL-555 1204 chr3L 15086693 15086718 chr3L 15086943 15086968 11 250 1.0 2.5 1.8 3.9 275 chr3L 15086693 intron cp309 - chr3L 15086830 intron cp309 - chr3L 15086968 intron cp309 - chr3L_11_15085001 chr3L_15085001 RAL-555 1205 chr3L 15193696 15193724 chr3L 15193865 15193893 14 168 3.5 5.0 4.2 2.7 197 chr3L 15193696 intergenic not near genes chr3L 15193794 intergenic not near genes chr3L 15193893 intergenic not near genes chr3L_14_15190001 chr3L_15190001 RAL-555 1206 chr3L 15261719 15261725 chr3L 22908065 22908066 11 7646343 9.0 20.0 14.5 0.7 7646347 chr3L 15261719 intergenic not near genes chr3L 19084892 intron Mkp3 - chr3L 22908066 intergenic not near genes chr3L_11_19080001 chr3L_19080001 RAL-555 1207 chr3L 15261885 15261915 chr3L 15261986 15262015 12 101 2.0 0.0 1.0 6.0 130 chr3L 15261885 intergenic not near genes chr3L 15261950 intergenic not near genes chr3L 15262015 intergenic not near genes chr3L_12_15260001 chr3L_15260001 RAL-555 1208 chr3L 15273350 15273361 chr3L 15273496 15273507 4 146 0.0 4.0 2.0 1.3 157 chr3L 15273350 intergenic not near genes chr3L 15273428 intergenic not near genes chr3L 15273507 intergenic not near genes chr3L_4_15270001 chr3L_15270001 RAL-555 1209 chr3L 15284565 15284598 chr3L 15284644 15284676 8 79 3.0 3.0 3.0 2.0 111 chr3L 15284565 intergenic not near genes chr3L 15284620 intergenic not near genes chr3L 15284676 intergenic not near genes chr3L_8_15280001 chr3L_15280001 RAL-555 1210 chr3L 15295769 15295801 chr3L 15298611 15298644 gypsy5 9 2843 3.5 3.0 3.2 2.1 2875 chr3L 15295769 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298644 intergenic Best4 + chr3L_9_15295001 chr3L_15295001 RAL-555 1211 chr3L 15315668 15315701 chr3L 15316845 15316878 11 1177 5.0 5.5 5.2 1.8 1210 chr3L 15315668 intergenic not near genes chr3L 15316273 intergenic not near genes chr3L 15316878 intergenic not near genes chr3L_11_15315001 chr3L_15315001 RAL-555 1212 chr3L 15333224 15333258 chr3L 15333308 15333342 11 84 1.5 3.0 2.2 3.4 118 chr3L 15333224 intergenic CR43247 + chr3L 15333283 intergenic CR43247 + chr3L 15333342 intergenic CR43247 + chr3L_11_15330001 chr3L_15330001 RAL-555 1213 chr3L 15406043 15406053 chr3L 15406126 15406136 5 83 2.0 4.5 3.2 1.2 93 chr3L 15406043 intergenic not near genes chr3L 15406090 intergenic not near genes chr3L 15406136 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-555 1214 chr3L 15444653 15444684 chr3L 15444747 15444778 15 93 2.5 3.0 2.8 3.9 125 chr3L 15444653 intergenic not near genes chr3L 15444716 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_15_15440001 chr3L_15440001 RAL-555 1215 chr3L 15466038 15466128 chr3L 15466120 15466223 5 87 0.0 0.0 0.0 5.0 185 chr3L 15466038 intergenic not near genes chr3L 15466130 intergenic not near genes chr3L 15466223 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-555 1216 chr3L 15482603 15482628 chr3L 15482684 15482709 9 81 0.0 1.5 0.8 5.0 106 chr3L 15482603 intergenic not near genes chr3L 15482656 intergenic not near genes chr3L 15482709 intergenic not near genes chr3L_9_15480001 chr3L_15480001 RAL-555 1217 chr3L 15658473 15658501 chr3L 15658562 15658585 10 88 1.5 1.5 1.5 4.0 112 chr3L 15658473 intergenic Eig71Eg +,Eig71Eh - chr3L 15658529 intergenic Eig71Eg +,Eig71Eh - chr3L 15658585 intergenic Eig71Eh -,Eig71Eg + chr3L_10_15655001 chr3L_15655001 RAL-555 1218 chr3L 15691415 15691436 chr3L 15691497 15691518 6 82 1.5 0.0 0.8 3.3 103 chr3L 15691415 intron CG34451 - chr3L 15691466 intron CG34451 - chr3L 15691518 intron CG34451 - chr3L_6_15690001 chr3L_15690001 RAL-555 1219 chr3L 15742984 15742989 chr3L 15743144 15743149 4 160 4.5 0.0 2.2 1.2 165 chr3L 15742984 intergenic not near genes chr3L 15743066 intergenic not near genes chr3L 15743149 intergenic not near genes chr3L_4_15740001 chr3L_15740001 RAL-555 1220 chr3L 15756879 15756909 chr3L 15756962 15756992 11 83 5.0 0.0 2.5 3.1 113 chr3L 15756879 intergenic not near genes chr3L 15756936 intergenic not near genes chr3L 15756992 intergenic not near genes chr3L_11_15755001 chr3L_15755001 RAL-555 1221 chr3L 15831784 15831805 chr3L 15831859 15831881 8 76 3.0 4.0 3.5 1.8 97 chr3L 15831784 3` UTR dbo + chr3L 15831832 3` UTR dbo + chr3L 15831881 3` UTR dbo + chr3L_8_15830001 chr3L_15830001 RAL-555 1222 chr3L 15833804 15833831 chr3L 15834043 15834070 7 239 21.5 17.5 19.5 0.3 266 chr3L 15833804 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833937 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834070 3` UTR CG18081 - chr3L_7_15830001 chr3L_15830001 RAL-555 1223 chr3L 15899226 15899259 chr3L 15899793 15899825 jockey 7 566 3.0 5.0 4.0 1.4 599 chr3L 15899226 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899825 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-555 1224 chr3L 15981673 15981680 chr3L 15981759 15981766 5 86 6.5 3.0 4.8 0.9 93 chr3L 15981673 intron,3` UTR brm -,CG17027 + chr3L 15981720 intron,3` UTR brm -,CG17027 + chr3L 15981766 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-555 1225 chr3L 16159267 16159294 chr3L 16159344 16159368 7 77 5.0 6.5 5.8 1.0 101 chr3L 16159267 intron CG5151 - chr3L 16159318 intron CG5151 - chr3L 16159368 intron CG5151 - chr3L_7_16155001 chr3L_16155001 RAL-555 1226 chr3L 16162595 16162628 chr3L 16162679 16162712 8 84 2.0 2.5 2.2 2.5 117 chr3L 16162595 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162712 intron CG5151 - chr3L_8_16160001 chr3L_16160001 RAL-555 1227 chr3L 16184087 16184122 chr3L 16188931 16188966 X-element 13 4844 2.0 0.5 1.2 5.9 4879 chr3L 16184087 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188966 intergenic not near genes chr3L_13_16185001 chr3L_16185001 RAL-555 1228 chr3L 16322823 16322854 chr3L 16322912 16322944 9 90 2.0 4.0 3.0 2.2 121 chr3L 16322823 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322944 intergenic not near genes chr3L_9_16320001 chr3L_16320001 RAL-555 1229 chr3L 16450040 16450053 chr3L 16450125 16450138 6 85 0.5 6.0 3.2 1.4 98 chr3L 16450040 intron,intron CG33158 +,dsx-c73A - chr3L 16450089 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_6_16450001 chr3L_16450001 RAL-555 1230 chr3L 16493976 16494012 chr3L 16494491 16494529 jockey 18 516 3.0 3.5 3.2 4.3 553 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_18_16490001 chr3L_16490001 RAL-555 1231 chr3L 16503647 16503657 chr3L 16503724 16503734 5 77 1.0 2.5 1.8 1.8 87 chr3L 16503647 intron CG43373 - chr3L 16503690 intron CG43373 - chr3L 16503734 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-555 1232 chr3L 16509399 16509424 chr3L 16509550 16509575 11 151 1.0 1.5 1.2 5.0 176 chr3L 16509399 intron CG43373 - chr3L 16509487 intron CG43373 - chr3L 16509575 intron CG43373 - chr3L_11_16505001 chr3L_16505001 RAL-555 1233 chr3L 16610685 16610713 chr3L 16610770 16610798 10 85 1.5 1.0 1.2 4.5 113 chr3L 16610685 3` UTR Su(P) - chr3L 16610742 exon Su(P) - chr3L 16610798 exon Su(P) - chr3L_10_16610001 chr3L_16610001 RAL-555 1234 chr3L 16616509 16616542 chr3L 16621837 16621870 297 10 5328 2.5 0.0 1.2 4.5 5361 chr3L 16616509 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621870 3` UTR Abl - chr3L_10_16615001 chr3L_16615001 RAL-555 1235 chr3L 16643663 16643680 chr3L 16643745 16643762 13 82 4.5 6.0 5.2 2.1 99 chr3L 16643663 intron Abl - chr3L 16643712 intron Abl - chr3L 16643762 intron Abl - chr3L_13_16640001 chr3L_16640001 RAL-555 1236 chr3L 16684018 16684053 chr3L 16689239 16689274 copia 4 5221 2.0 1.0 1.5 1.6 5256 chr3L 16684018 intron,intron Lasp -,CG43954 - chr3L 16686646 intron,intron Lasp -,CG43954 - chr3L 16689274 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-555 1237 chr3L 16754429 16754455 chr3L 16754508 16754534 14 79 2.0 2.0 2.0 4.7 105 chr3L 16754429 intergenic not near genes chr3L 16754482 intergenic not near genes chr3L 16754534 intergenic not near genes chr3L_14_16750001 chr3L_16750001 RAL-555 1238 chr3L 16808047 16808068 chr3L 16808123 16808141 4 75 2.0 0.0 1.0 2.0 94 chr3L 16808047 intron nudC + chr3L 16808094 intron nudC + chr3L 16808141 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-555 1239 chr3L 16830776 16830790 chr3L 16830859 16830872 4 82 4.0 0.0 2.0 1.3 96 chr3L 16830776 intergenic not near genes chr3L 16830824 intergenic not near genes chr3L 16830872 intergenic not near genes chr3L_4_16830001 chr3L_16830001 RAL-555 1240 chr3L 16893065 16893095 chr3L 16893380 16893410 6 315 4.5 1.5 3.0 1.5 345 chr3L 16893065 intron Lmpt + chr3L 16893238 intron Lmpt + chr3L 16893410 intron Lmpt + chr3L_6_16890001 chr3L_16890001 RAL-555 1241 chr3L 16945725 16945759 chr3L 16954878 16954912 roo 11 9152 3.5 3.5 3.5 2.4 9187 chr3L 16945725 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-555 1242 chr3L 17027167 17027186 chr3L 17027258 17027278 5 92 1.0 2.0 1.5 2.0 111 chr3L 17027167 intergenic Fit2 +,CG7730 + chr3L 17027222 intergenic Fit2 +,CG7730 + chr3L 17027278 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-555 1243 chr3L 17048481 17048510 chr3L 17048583 17048612 6 102 3.0 2.0 2.5 1.7 131 chr3L 17048481 intergenic TpnC73F + chr3L 17048546 intergenic TpnC73F + chr3L 17048612 intergenic TpnC73F + chr3L_6_17045001 chr3L_17045001 RAL-555 1244 chr3L 17067744 17067773 chr3L 17067876 17067905 5 132 3.5 1.0 2.2 1.6 161 chr3L 17067744 intron Rbp6 - chr3L 17067824 intron Rbp6 - chr3L 17067905 intron Rbp6 - chr3L_5_17065001 chr3L_17065001 RAL-555 1245 chr3L 17085002 17085027 chr3L 17094151 17094176 roo 8 9149 4.5 4.0 4.2 1.5 9174 chr3L 17085002 intron Rbp6 - chr3L 17089589 intron Rbp6 - chr3L 17094176 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 RAL-555 1246 chr3L 17099165 17099189 chr3L 17099284 17099308 4 120 3.5 1.0 2.2 1.2 143 chr3L 17099165 intron Rbp6 - chr3L 17099236 intron Rbp6 - chr3L 17099308 intron Rbp6 - chr3L_4_17095001 chr3L_17095001 RAL-555 1247 chr3L 17117104 17117131 chr3L 17117189 17117216 18 84 1.0 2.5 1.8 6.4 112 chr3L 17117104 intron Rbp6 - chr3L 17117160 intron Rbp6 - chr3L 17117216 intron Rbp6 - chr3L_18_17115001 chr3L_17115001 RAL-555 1248 chr3L 17149163 17149181 chr3L 17149244 17149262 6 81 7.0 0.0 3.5 1.3 99 chr3L 17149163 intron Rbp6 - chr3L 17149212 intron Rbp6 - chr3L 17149262 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-555 1249 chr3L 17167973 17168007 chr3L 17168078 17168112 10 104 5.0 3.5 4.2 1.9 139 chr3L 17167973 intron Rbp6 - chr3L 17168042 intron Rbp6 - chr3L 17168112 intron Rbp6 - chr3L_10_17165001 chr3L_17165001 RAL-555 1250 chr3L 17265309 17265333 chr3L 17265388 17265412 8 79 3.5 1.5 2.5 2.3 103 chr3L 17265309 intergenic CG13723 + chr3L 17265360 intergenic CG13723 + chr3L 17265412 intergenic CG13723 + chr3L_8_17265001 chr3L_17265001 RAL-555 1251 chr3L 17295229 17295250 chr3L 17295303 17295324 7 74 2.0 4.0 3.0 1.8 95 chr3L 17295229 intergenic not near genes chr3L 17295276 intergenic not near genes chr3L 17295324 intergenic not near genes chr3L_7_17295001 chr3L_17295001 RAL-555 1252 chr3L 17310089 17310092 chr3L 17310178 17310181 4 89 0.0 2.0 1.0 2.0 92 chr3L 17310089 intergenic not near genes chr3L 17310135 intergenic not near genes chr3L 17310181 intergenic not near genes chr3L_4_17310001 chr3L_17310001 RAL-555 1253 chr3L 17332874 17332905 chr3L 17332956 17332987 11 82 4.5 6.0 5.2 1.8 113 chr3L 17332874 intergenic not near genes chr3L 17332930 intergenic not near genes chr3L 17332987 intergenic not near genes chr3L_11_17330001 chr3L_17330001 RAL-555 1254 chr3L 17446547 17446569 chr3L 17446662 17446684 7 115 2.0 3.5 2.8 1.8 137 chr3L 17446547 intron CG18265 + chr3L 17446616 intron CG18265 + chr3L 17446684 intron CG18265 + chr3L_7_17445001 chr3L_17445001 RAL-555 1255 chr3L 17474908 17474941 chr3L 17474984 17475018 9 77 1.0 2.5 1.8 3.2 110 chr3L 17474908 intergenic CG7580 +,CG7589 + chr3L 17474963 intergenic CG7580 +,CG7589 + chr3L 17475018 intergenic CG7580 + chr3L_9_17470001 chr3L_17470001 RAL-555 1256 chr3L 17476788 17476791 chr3L 22908066 22908066 4 5431277 11.5 19.5 15.5 0.2 5431278 chr3L 17476788 3` UTR CG34250 + chr3L 20192427 intron CG42674 - chr3L 22908066 intergenic not near genes chr3L_4_20190001 chr3L_20190001 RAL-555 1257 chr3L 17516981 17517013 chr3L 17524539 17524571 412 6 7557 2.0 3.0 2.5 1.7 7590 chr3L 17516981 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-555 1258 chr3L 17580586 17580609 chr3L 17580761 17580785 6 176 1.5 0.0 0.8 3.3 199 chr3L 17580586 intron Eip74EF - chr3L 17580686 intron Eip74EF - chr3L 17580785 intron Eip74EF - chr3L_6_17580001 chr3L_17580001 RAL-555 1259 chr3L 17592784 17592819 chr3L 17592875 17592910 10 91 1.5 1.5 1.5 4.0 126 chr3L 17592784 intron Eip74EF - chr3L 17592847 intron Eip74EF - chr3L 17592910 intron Eip74EF - chr3L_10_17590001 chr3L_17590001 RAL-555 1260 chr3L 17632692 17632713 chr3L 17632776 17632797 8 84 2.5 2.5 2.5 2.3 105 chr3L 17632692 intergenic CR44567 -,CR44566 + chr3L 17632744 intergenic CR44567 -,CR44566 + chr3L 17632797 intergenic CR44567 - chr3L_8_17630001 chr3L_17630001 RAL-555 1261 chr3L 17713192 17713219 chr3L 17713352 17713379 10 160 4.0 3.5 3.8 2.1 187 chr3L 17713192 intron Ccn + chr3L 17713286 intron Ccn + chr3L 17713379 intron Ccn + chr3L_10_17710001 chr3L_17710001 RAL-555 1262 chr3L 17758035 17758060 chr3L 17758111 17758136 5 76 3.5 5.0 4.2 1.0 101 chr3L 17758035 intron,intron Adgf-A -,Msi - chr3L 17758086 intron,intron Adgf-A -,Msi - chr3L 17758136 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_5_17755001 chr3L_17755001 RAL-555 1263 chr3L 17773209 17773232 chr3L 17773305 17773327 6 96 3.5 3.0 3.2 1.4 118 chr3L 17773209 intergenic not near genes chr3L 17773268 intergenic not near genes chr3L 17773327 intergenic not near genes chr3L_6_17770001 chr3L_17770001 RAL-555 1264 chr3L 17782360 17782375 chr3L 17782636 17782651 5 276 0.5 4.0 2.2 1.6 291 chr3L 17782360 intergenic not near genes chr3L 17782506 intergenic not near genes chr3L 17782651 intergenic not near genes chr3L_5_17780001 chr3L_17780001 RAL-555 1265 chr3L 17789848 17789873 chr3L 17789924 17789949 11 76 1.5 2.5 2.0 3.7 101 chr3L 17789848 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789949 intergenic not near genes chr3L_11_17785001 chr3L_17785001 RAL-555 1266 chr3L 17790197 17790231 chr3L 17790310 17790348 7 116 0.5 1.0 0.8 3.9 151 chr3L 17790197 intergenic not near genes chr3L 17790272 intergenic not near genes chr3L 17790348 intergenic not near genes chr3L_7_17790001 chr3L_17790001 RAL-555 1267 chr3L 17799822 17799839 chr3L 17801609 17801626 S-element 4 1787 1.0 2.0 1.5 1.6 1804 chr3L 17799822 intron NUCB1 - chr3L 17800724 intron NUCB1 - chr3L 17801626 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 RAL-555 1268 chr3L 17827292 17827316 chr3L 17827382 17827407 8 91 3.5 4.5 4.0 1.6 115 chr3L 17827292 intron Grd + chr3L 17827350 intron Grd + chr3L 17827407 intron Grd + chr3L_8_17825001 chr3L_17825001 RAL-555 1269 chr3L 17834322 17834357 chr3L 17834486 17834521 11 164 3.0 0.5 1.8 3.9 199 chr3L 17834322 intron Grd + chr3L 17834422 intron Grd + chr3L 17834521 intron Grd + chr3L_11_17830001 chr3L_17830001 RAL-555 1270 chr3L 17837624 17837652 chr3L 17837712 17837740 8 88 4.0 4.5 4.2 1.5 116 chr3L 17837624 exon Grd + chr3L 17837682 intron Grd + chr3L 17837740 intron Grd + chr3L_8_17835001 chr3L_17835001 RAL-555 1271 chr3L 17842281 17842313 chr3L 17842544 17842576 5 263 1.5 0.5 1.0 2.5 295 chr3L 17842281 exon,5` UTR CG5567 -,CR45175 + chr3L 17842428 exon,5` UTR CG5567 -,CR45175 + chr3L 17842576 intron,5` UTR CG5567 -,CR45175 + chr3L_5_17840001 chr3L_17840001 RAL-555 1272 chr3L 17918370 17918404 chr3L 17921173 17921207 opus 5 2803 0.5 2.0 1.2 2.3 2837 chr3L 17918370 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-555 1273 chr3L 18029959 18029977 chr3L 18030036 18030054 6 77 0.5 0.0 0.2 5.0 95 chr3L 18029959 intron Eip75B - chr3L 18030006 intron Eip75B - chr3L 18030054 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-555 1274 chr3L 18077951 18077956 chr3L 18078047 18078053 4 96 4.5 3.5 4.0 0.8 102 chr3L 18077951 5` UTR CR45392 + chr3L 18078002 5` UTR CR45392 + chr3L 18078053 5` UTR CR45392 + chr3L_4_18075001 chr3L_18075001 RAL-555 1275 chr3L 18106253 18106280 chr3L 18106372 18106399 5 119 3.0 0.0 1.5 2.0 146 chr3L 18106253 intergenic CG13698 -,mRpS26 + chr3L 18106326 intergenic CG13698 -,mRpS26 + chr3L 18106399 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-555 1276 chr3L 18163998 18164241 chr3L 18164200 18164408 8 184 1.0 1.0 1.0 4.0 410 chr3L 18163998 intergenic not near genes chr3L 18164203 intergenic not near genes chr3L 18164408 intergenic not near genes chr3L_8_18160001 chr3L_18160001 RAL-555 1277 chr3L 18221098 18221128 chr3L 18221179 18221209 9 81 0.0 0.0 0.0 9.0 111 chr3L 18221098 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221209 intergenic not near genes chr3L_9_18220001 chr3L_18220001 RAL-555 1278 chr3L 18223164 18223183 chr3L 18223247 18223266 5 83 5.0 0.0 2.5 1.4 102 chr3L 18223164 intergenic not near genes chr3L 18223215 intergenic not near genes chr3L 18223266 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-555 1279 chr3L 18248953 18248987 chr3L 18249051 18249085 10 98 0.0 1.5 0.8 5.6 132 chr3L 18248953 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249085 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-555 1280 chr3L 18262470 18262482 chr3L 18262553 18262565 5 83 2.5 1.5 2.0 1.7 95 chr3L 18262470 intergenic not near genes chr3L 18262518 intergenic not near genes chr3L 18262565 intergenic not near genes chr3L_5_18260001 chr3L_18260001 RAL-555 1281 chr3L 18283931 18283964 chr3L 18284008 18284041 10 77 1.5 3.0 2.2 3.1 110 chr3L 18283931 intergenic not near genes chr3L 18283986 intergenic not near genes chr3L 18284041 intergenic not near genes chr3L_10_18280001 chr3L_18280001 RAL-555 1282 chr3L 18301350 18301372 chr3L 18301439 18301461 6 89 0.5 2.0 1.2 2.7 111 chr3L 18301350 intergenic CG13700 - chr3L 18301406 intergenic CG13700 - chr3L 18301461 intergenic CG13700 - chr3L_6_18300001 chr3L_18300001 RAL-555 1283 chr3L 18321081 18321101 chr3L 18321164 18321187 5 85 0.5 1.5 1.0 2.5 106 chr3L 18321081 intergenic not near genes chr3L 18321134 intergenic not near genes chr3L 18321187 intergenic not near genes chr3L_5_18320001 chr3L_18320001 RAL-555 1284 chr3L 18408733 18408749 chr3L 18408819 18408835 4 86 4.0 2.0 3.0 1.0 102 chr3L 18408733 intergenic not near genes chr3L 18408784 intergenic not near genes chr3L 18408835 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-555 1285 chr3L 9013689 9013695 chr3L 18417066 18417066 6 9403374 20.5 14.5 17.5 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-555 1286 chr3L 18430264 18430293 chr3L 18430339 18430370 7 77 1.0 2.5 1.8 2.5 106 chr3L 18430264 intergenic not near genes chr3L 18430317 intergenic not near genes chr3L 18430370 intergenic not near genes chr3L_7_18430001 chr3L_18430001 RAL-555 1287 chr3L 18436062 18436078 chr3L 18436160 18436176 7 98 3.0 1.0 2.0 2.3 114 chr3L 18436062 intergenic not near genes chr3L 18436119 intergenic not near genes chr3L 18436176 intergenic not near genes chr3L_7_18435001 chr3L_18435001 RAL-555 1288 chr3L 18456274 18456302 chr3L 18456362 18456390 7 88 1.5 1.0 1.2 3.2 116 chr3L 18456274 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456390 intergenic CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-555 1289 chr3L 18464487 18464509 chr3L 18464572 18464595 9 86 0.5 4.5 2.5 2.6 108 chr3L 18464487 intergenic not near genes chr3L 18464541 intergenic not near genes chr3L 18464595 intergenic not near genes chr3L_9_18460001 chr3L_18460001 RAL-555 1290 chr3L 18465572 18465607 chr3L 18465681 18465716 8 109 2.5 3.0 2.8 2.1 144 chr3L 18465572 intergenic not near genes chr3L 18465644 intergenic not near genes chr3L 18465716 intergenic not near genes chr3L_8_18465001 chr3L_18465001 RAL-555 1291 chr3L 18485685 18485704 chr3L 18485772 18485791 7 86 2.5 1.0 1.8 2.5 106 chr3L 18485685 3` UTR AstC-R2 - chr3L 18485738 3` UTR AstC-R2 - chr3L 18485791 3` UTR AstC-R2 - chr3L_7_18485001 chr3L_18485001 RAL-555 1292 chr3L 18506133 18506160 chr3L 18509596 18509623 F-element 11 3463 1.0 1.5 1.2 5.0 3490 chr3L 18506133 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509623 intergenic not near genes chr3L_11_18505001 chr3L_18505001 RAL-555 1293 chr3L 18528629 18528661 chr3L 18537790 18537822 roo 8 9161 1.0 1.5 1.2 3.6 9193 chr3L 18528629 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537822 intergenic not near genes chr3L_8_18530001 chr3L_18530001 RAL-555 1294 chr3L 18546704 18546731 chr3L 18546797 18546825 11 94 2.0 3.5 2.8 2.9 121 chr3L 18546704 intergenic not near genes chr3L 18546764 intergenic not near genes chr3L 18546825 intergenic not near genes chr3L_11_18545001 chr3L_18545001 RAL-555 1295 chr3L 18582217 18582248 chr3L 18582300 18582332 12 84 2.0 1.0 1.5 4.8 115 chr3L 18582217 intergenic not near genes chr3L 18582274 intergenic not near genes chr3L 18582332 intergenic not near genes chr3L_12_18580001 chr3L_18580001 RAL-555 1296 chr3L 18586572 18586595 chr3L 18586671 18586694 13 98 4.0 2.5 3.2 3.1 122 chr3L 18586572 intergenic not near genes chr3L 18586633 intergenic not near genes chr3L 18586694 intergenic not near genes chr3L_13_18585001 chr3L_18585001 RAL-555 1297 chr3L 18593953 18593980 chr3L 18595933 18595959 Doc 9 1980 2.5 0.5 1.5 3.6 2006 chr3L 18593953 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18595959 intergenic CR45389 + chr3L_9_18590001 chr3L_18590001 RAL-555 1298 chr3L 18688945 18688964 chr3L 18689047 18689064 8 102 4.0 4.0 4.0 1.6 119 chr3L 18688945 intergenic not near genes chr3L 18689004 intergenic not near genes chr3L 18689064 intergenic not near genes chr3L_8_18685001 chr3L_18685001 RAL-555 1299 chr3L 18710759 18710792 chr3L 18718710 18718744 Stalker2 10 7952 2.5 1.0 1.8 3.6 7985 chr3L 18710759 intergenic not near genes chr3L 18714752 intergenic not near genes chr3L 18718744 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-555 1300 chr3L 18721777 18721805 chr3L 18721868 18721896 11 91 2.0 3.5 2.8 2.9 119 chr3L 18721777 intergenic CG12477 - chr3L 18721836 intergenic CG12477 - chr3L 18721896 3` UTR CG12477 - chr3L_11_18720001 chr3L_18720001 RAL-555 1301 chr3L 18735773 18735780 chr3L 18735848 18735856 8 76 2.5 8.5 5.5 1.2 83 chr3L 18735773 intergenic not near genes chr3L 18735814 intergenic not near genes chr3L 18735856 intergenic not near genes chr3L_8_18735001 chr3L_18735001 RAL-555 1302 chr3L 18753548 18753567 chr3L 18753630 18753649 8 82 0.0 1.0 0.5 5.3 101 chr3L 18753548 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753649 intron ftz-f1 - chr3L_8_18750001 chr3L_18750001 RAL-555 1303 chr3L 18772409 18772440 chr3L 18781090 18781121 roo 10 8681 3.0 5.0 4.0 2.0 8712 chr3L 18772409 intron ftz-f1 - chr3L 18776765 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-555 1304 chr3L 18810149 18810172 chr3L 18810226 18810249 7 77 2.5 2.0 2.2 2.2 100 chr3L 18810149 intron CG14073 - chr3L 18810199 intron CG14073 - chr3L 18810249 intron CG14073 - chr3L_7_18810001 chr3L_18810001 RAL-555 1305 chr3L 18811893 18811895 chr3L 22908066 22908066 4 4096172 8.0 19.5 13.8 0.3 4096173 chr3L 18811893 intron CG14073 - chr3L 20859980 exon CG32432 - chr3L 22908066 intergenic not near genes chr3L_4_20855001 chr3L_20855001 RAL-555 1306 chr3L 18833779 18833813 chr3L 18834943 18834977 1360 5 1164 3.0 1.5 2.2 1.6 1198 chr3L 18833779 intron Indy - chr3L 18834378 intron Indy - chr3L 18834977 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-555 1307 chr3L 18885993 18886016 chr3L 18886068 18886092 6 76 0.5 2.5 1.5 2.4 99 chr3L 18885993 intron CG3961 - chr3L 18886042 intron CG3961 - chr3L 18886092 intron CG3961 - chr3L_6_18885001 chr3L_18885001 RAL-555 1308 chr3L 18916489 18916515 chr3L 18916595 18916621 9 105 5.5 1.0 3.2 2.1 132 chr3L 18916489 intergenic not near genes chr3L 18916555 intergenic not near genes chr3L 18916621 intergenic not near genes chr3L_9_18915001 chr3L_18915001 RAL-555 1309 chr3L 18933629 18933661 chr3L 18933723 18933754 10 93 2.5 1.5 2.0 3.3 125 chr3L 18933629 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933754 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-555 1310 chr3L 18969550 18969575 chr3L 18969626 18969651 12 76 4.0 2.0 3.0 3.0 101 chr3L 18969550 intergenic not near genes chr3L 18969600 intergenic not near genes chr3L 18969651 intergenic not near genes chr3L_12_18965001 chr3L_18965001 RAL-555 1311 chr3L 19008853 19008869 chr3L 19009191 19009201 jockey 5 337 4.5 9.0 6.8 0.6 348 chr3L 19008853 intron nkd - chr3L 19009027 intron nkd - chr3L 19009201 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-555 1312 chr3L 19012857 19012886 chr3L 19012942 19012971 7 84 1.5 0.5 1.0 3.5 114 chr3L 19012857 intron nkd - chr3L 19012914 intron nkd - chr3L 19012971 intron nkd - chr3L_7_19010001 chr3L_19010001 RAL-555 1313 chr3L 19015182 19015213 chr3L 19015265 19015293 4 83 2.0 1.0 1.5 1.6 111 chr3L 19015182 intron nkd - chr3L 19015238 intron nkd - chr3L 19015293 intron nkd - chr3L_4_19015001 chr3L_19015001 RAL-555 1314 chr3L 19115653 19115671 chr3L 19115833 19115851 BS 6 180 1.5 2.5 2.0 2.0 198 chr3L 19115653 intron CG14082 - chr3L 19115752 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-555 1315 chr3L 19117041 19117076 chr3L 19124488 19124523 mdg1 9 7447 5.5 3.5 4.5 1.6 7482 chr3L 19117041 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-555 1316 chr3L 19187320 19187346 chr3L 19187454 19187480 5 134 3.0 5.5 4.2 1.0 160 chr3L 19187320 intron fz2 - chr3L 19187400 intron fz2 - chr3L 19187480 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-555 1317 chr3L 19208063 19208089 chr3L 19209437 19209463 Doc 9 1374 5.5 3.5 4.5 1.6 1400 chr3L 19208063 intron fz2 - chr3L 19208763 intron fz2 - chr3L 19209463 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-555 1318 chr3L 19216516 19216538 chr3L 19216593 19216615 7 77 2.0 0.0 1.0 3.5 99 chr3L 19216516 intron fz2 - chr3L 19216566 intron fz2 - chr3L 19216615 intron fz2 - chr3L_7_19215001 chr3L_19215001 RAL-555 1319 chr3L 19228402 19228432 chr3L 19228494 19228525 16 93 3.0 2.0 2.5 4.6 123 chr3L 19228402 intron fz2 - chr3L 19228464 intron fz2 - chr3L 19228525 intron fz2 - chr3L_16_19225001 chr3L_19225001 RAL-555 1320 chr3L 19231350 19231383 chr3L 19231437 19231470 6 87 1.5 3.0 2.2 1.9 120 chr3L 19231350 intron fz2 - chr3L 19231410 intron fz2 - chr3L 19231470 intron fz2 - chr3L_6_19230001 chr3L_19230001 RAL-555 1321 chr3L 19232861 19232890 chr3L 19232943 19232972 5 81 1.5 2.0 1.8 1.8 111 chr3L 19232861 intron fz2 - chr3L 19232916 intron fz2 - chr3L 19232972 intron fz2 - chr3L_5_19230001 chr3L_19230001 RAL-555 1322 chr3L 19342762 19342772 chr3L 19342853 19342863 6 91 3.5 4.0 3.8 1.2 101 chr3L 19342762 3` UTR CG32206 - chr3L 19342812 3` UTR CG32206 - chr3L 19342863 3` UTR CG32206 - chr3L_6_19340001 chr3L_19340001 RAL-555 1323 chr3L 19417802 19417831 chr3L 19417882 19417911 8 79 3.0 1.5 2.2 2.5 109 chr3L 19417802 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417911 intergenic not near genes chr3L_8_19415001 chr3L_19415001 RAL-555 1324 chr3L 19426751 19426779 chr3L 19426829 19426857 11 78 1.0 4.0 2.5 3.1 106 chr3L 19426751 intergenic not near genes chr3L 19426804 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_11_19425001 chr3L_19425001 RAL-555 1325 chr3L 19527933 19527955 chr3L 19528003 19528031 4 76 5.0 2.5 3.8 0.8 98 chr3L 19527933 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528031 intergenic not near genes chr3L_4_19525001 chr3L_19525001 RAL-555 1326 chr3L 19820300 19820318 chr3L 19827849 19827867 412 6 7549 4.0 2.0 3.0 1.5 7567 chr3L 19820300 intron Deaf1 + chr3L 19824084 intron Deaf1 + chr3L 19827867 intron Deaf1 + chr3L_6_19820001 chr3L_19820001 RAL-555 1327 chr3L 19848504 19848533 chr3L 19857694 19857723 roo 8 9190 2.0 1.5 1.8 2.9 9219 chr3L 19848504 intron Papss + chr3L 19853114 intron Papss + chr3L 19857723 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-555 1328 chr3L 19861821 19861852 chr3L 19863609 19863640 S-element 6 1788 3.5 0.0 1.8 2.1 1819 chr3L 19861821 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-555 1329 chr3L 19929205 19929206 chr3L 22908066 22908067 6 2978861 9.5 19.5 14.5 0.4 2978862 chr3L 19929205 intron RhoGDI + chr3L 21418636 intron rgn + chr3L 22908067 intergenic not near genes chr3L_6_21415001 chr3L_21415001 RAL-555 1330 chr3L 19961281 19961308 chr3L 19961492 19961519 10 211 2.0 1.5 1.8 3.6 238 chr3L 19961281 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961519 intron Ac76E + chr3L_10_19960001 chr3L_19960001 RAL-555 1331 chr3L 19975680 19975710 chr3L 19975756 19975786 12 76 3.5 3.0 3.2 2.9 106 chr3L 19975680 intron Ac76E + chr3L 19975733 intron Ac76E + chr3L 19975786 intron Ac76E + chr3L_12_19975001 chr3L_19975001 RAL-555 1332 chr3L 20086786 20086815 chr3L 20086864 20086893 8 78 3.0 0.0 1.5 3.2 107 chr3L 20086786 intron sNPF-R - chr3L 20086840 intron sNPF-R - chr3L 20086893 intron sNPF-R - chr3L_8_20085001 chr3L_20085001 RAL-555 1333 chr3L 20113412 20113441 chr3L 20113499 20113528 14 87 4.5 5.0 4.8 2.4 116 chr3L 20113412 intergenic not near genes chr3L 20113470 intergenic not near genes chr3L 20113528 intergenic not near genes chr3L_14_20110001 chr3L_20110001 RAL-555 1334 chr3L 20113658 20113686 chr3L 20122915 20122943 roo 5 9257 3.5 2.5 3.0 1.2 9285 chr3L 20113658 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122943 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-555 1335 chr3L 20148289 20148316 chr3L 20148379 20148406 7 90 4.0 4.0 4.0 1.4 117 chr3L 20148289 intergenic not near genes chr3L 20148348 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-555 1336 chr3L 20149109 20149133 chr3L 20149242 20149266 5 132 1.0 3.0 2.0 1.7 157 chr3L 20149109 intergenic not near genes chr3L 20149188 intergenic CG42674 - chr3L 20149266 intergenic CG42674 - chr3L_5_20145001 chr3L_20145001 RAL-555 1337 chr3L 20156168 20156191 chr3L 20156290 20156313 11 121 4.0 1.5 2.8 2.9 145 chr3L 20156168 intron CG42674 - chr3L 20156240 intron CG42674 - chr3L 20156313 intron CG42674 - chr3L_11_20155001 chr3L_20155001 RAL-555 1338 chr3L 20182346 20182366 chr3L 20182448 20182468 8 102 3.0 2.5 2.8 2.1 122 chr3L 20182346 intron CG42674 - chr3L 20182407 intron CG42674 - chr3L 20182468 intron CG42674 - chr3L_8_20180001 chr3L_20180001 RAL-555 1339 chr3L 20183425 20183430 chr3L 20183525 20183530 6 100 0.0 5.5 2.8 1.6 105 chr3L 20183425 intron CG42674 - chr3L 20183478 intron CG42674 - chr3L 20183530 intron CG42674 - chr3L_6_20180001 chr3L_20180001 RAL-555 1340 chr3L 20187474 20187484 chr3L 20187553 20187563 4 79 16.5 15.0 15.8 0.2 89 chr3L 20187474 intron CG42674 - chr3L 20187518 intron CG42674 - chr3L 20187563 intron CG42674 - chr3L_4_20185001 chr3L_20185001 RAL-555 1341 chr3L 20223337 20223368 chr3L 20223532 20223563 5 195 2.0 2.0 2.0 1.7 226 chr3L 20223337 intergenic CG17145 + chr3L 20223450 intergenic CG17145 +,CG17147 + chr3L 20223563 intergenic CG17145 +,CG17147 + chr3L_5_20220001 chr3L_20220001 RAL-555 1342 chr3L 20256636 20256658 chr3L 20256746 20256767 6 110 1.5 3.0 2.2 1.9 131 chr3L 20256636 exon rdgC + chr3L 20256702 intron rdgC + chr3L 20256767 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-555 1343 chr3L 20257334 20257362 chr3L 20258454 20258479 pogo 9 1119 2.5 5.5 4.0 1.8 1145 chr3L 20257334 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258479 intron rdgC + chr3L_9_20255001 chr3L_20255001 RAL-555 1344 chr3L 20321098 20321102 chr3L 20342904 20342908 17.6 5 21806 11.0 17.5 14.2 0.3 21810 chr3L 20321098 exon Spn77Bb + chr3L 20332003 intergenic not near genes chr3L 20342908 exon Spn77Bc + chr3L_5_20330001 chr3L_20330001 RAL-555 1345 chr3L 20377193 20377213 chr3L 20377343 20377363 7 149 2.0 3.0 2.5 2.0 170 chr3L 20377193 intron RhoBTB + chr3L 20377278 intron RhoBTB + chr3L 20377363 intron RhoBTB + chr3L_7_20375001 chr3L_20375001 RAL-555 1346 chr3L 20451277 20451302 chr3L 20451518 20451543 9 241 1.0 2.0 1.5 3.6 266 chr3L 20451277 intron CG5199 - chr3L 20451410 intron CG5199 - chr3L 20451543 intron CG5199 - chr3L_9_20450001 chr3L_20450001 RAL-555 1347 chr3L 20462586 20462601 chr3L 20462667 20462682 5 81 4.5 0.0 2.2 1.6 96 chr3L 20462586 intron atk - chr3L 20462634 intron atk - chr3L 20462682 intron atk - chr3L_5_20460001 chr3L_20460001 RAL-555 1348 chr3L 20476762 20476780 chr3L 20484361 20484379 springer 4 7599 1.5 3.5 2.5 1.1 7617 chr3L 20476762 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484379 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-555 1349 chr3L 20536236 20536267 chr3L 20536434 20536465 6 198 1.5 1.0 1.2 2.7 229 chr3L 20536236 intron Rcd2 - chr3L 20536350 intron Rcd2 - chr3L 20536465 intron Rcd2 - chr3L_6_20535001 chr3L_20535001 RAL-555 1350 chr3L 20556851 20556883 chr3L 20557140 20557172 11 289 3.0 2.0 2.5 3.1 321 chr3L 20556851 intergenic not near genes chr3L 20557012 intergenic not near genes chr3L 20557172 intergenic not near genes chr3L_11_20555001 chr3L_20555001 RAL-555 1351 chr3L 20590063 20590096 chr3L 20590602 20590635 412 9 538 2.5 2.5 2.5 2.6 572 chr3L 20590063 intergenic not near genes chr3L 20590349 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_9_20590001 chr3L_20590001 RAL-555 1352 chr3L 20616143 20616167 chr3L 20616345 20616369 4 202 0.5 1.0 0.8 2.2 226 chr3L 20616143 intron knrl - chr3L 20616256 intron knrl - chr3L 20616369 intron knrl - chr3L_4_20615001 chr3L_20615001 RAL-555 1353 chr3L 20692545 20692550 chr3L 20692659 20692664 4 114 2.0 4.0 3.0 1.0 119 chr3L 20692545 3` UTR kni - chr3L 20692604 3` UTR kni - chr3L 20692664 3` UTR kni - chr3L_4_20690001 chr3L_20690001 RAL-555 1354 chr3L 20771563 20771566 chr3L 22908066 22908067 12 2136502 15.5 19.5 17.5 0.6 2136504 chr3L 20771563 5` UTR Pitslre + chr3L 21839815 5` UTR P5CDh1 - chr3L 22908067 intergenic not near genes chr3L_12_21835001 chr3L_21835001 RAL-555 1355 chr3L 20821293 20821306 chr3L 20824762 20824774 NOF 5 3469 1.0 4.0 2.5 1.4 3481 chr3L 20821293 intron Pka-R1 + chr3L 20823034 intron Pka-R1 + chr3L 20824774 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-555 1356 chr3L 20849275 20849302 chr3L 20849354 20849381 14 79 1.5 4.0 2.8 3.7 106 chr3L 20849275 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_14_20845001 chr3L_20845001 RAL-555 1357 chr3L 21014915 21014948 chr3L 21023396 21023429 Tirant 7 8480 2.0 3.5 2.8 1.8 8514 chr3L 21014915 intron skd - chr3L 21019172 intron skd - chr3L 21023429 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-555 1358 chr3L 21082210 21082238 chr3L 21082288 21082316 9 78 1.0 5.5 3.2 2.1 106 chr3L 21082210 intron ko - chr3L 21082263 intron ko - chr3L 21082316 intron ko - chr3L_9_21080001 chr3L_21080001 RAL-555 1359 chr3L 21151865 21151890 chr3L 21156949 21156974 flea 9 5084 1.0 1.5 1.2 4.1 5109 chr3L 21151865 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156974 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-555 1360 chr3L 21186971 21187004 chr3L 21187051 21187085 11 81 1.0 0.5 0.8 6.1 114 chr3L 21186971 intron CG42337 - chr3L 21187028 intron CG42337 - chr3L 21187085 intron CG42337 - chr3L_11_21185001 chr3L_21185001 RAL-555 1361 chr3L 21194385 21194407 chr3L 21194463 21194485 8 78 1.5 2.0 1.8 2.9 100 chr3L 21194385 intergenic park - chr3L 21194435 intergenic park - chr3L 21194485 intergenic park - chr3L_8_21190001 chr3L_21190001 RAL-555 1362 chr3L 21243749 21243765 chr3L 21251312 21251328 412 9 7562 2.0 4.0 3.0 2.2 7579 chr3L 21243749 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251328 intron Eip78C + chr3L_9_21245001 chr3L_21245001 RAL-555 1363 chr3L 21306154 21306181 chr3L 21315313 21315340 roo 6 9159 2.5 1.5 2.0 2.0 9186 chr3L 21306154 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310747 intron Pc - chr3L 21315340 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 RAL-555 1364 chr3L 21393625 21393657 chr3L 21393723 21393757 10 100 1.0 3.0 2.0 3.3 132 chr3L 21393625 intron rgn + chr3L 21393691 intron rgn + chr3L 21393757 intron rgn + chr3L_10_21390001 chr3L_21390001 RAL-555 1365 chr3L 21415135 21415165 chr3L 21415218 21415248 8 83 1.0 4.0 2.5 2.3 113 chr3L 21415135 intron rgn + chr3L 21415192 intron rgn + chr3L 21415248 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-555 1366 chr3L 21432247 21432271 chr3L 21432351 21432375 8 103 4.5 2.5 3.5 1.8 128 chr3L 21432247 intron,exon barc -,CG33288 + chr3L 21432311 intron,exon barc -,CG33288 + chr3L 21432375 intron,exon barc -,CG33288 + chr3L_8_21430001 chr3L_21430001 RAL-555 1367 chr3L 4341332 4341337 chr3L 21448027 21448027 5 17106694 15.5 12.0 13.8 0.3 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-555 1368 chr3L 21458341 21458356 chr3L 21458436 21458451 INE-1 5 95 4.0 1.0 2.5 1.4 110 chr3L 21458341 intergenic not near genes chr3L 21458396 intergenic not near genes chr3L 21458451 intergenic not near genes chr3L_5_21455001 chr3L_21455001 RAL-555 1369 chr3L 21639196 21639223 chr3L 21639275 21639301 10 79 4.0 4.0 4.0 2.0 105 chr3L 21639196 intergenic CG32444 +,CG32445 + chr3L 21639248 intergenic CG32445 +,CG32444 + chr3L 21639301 intergenic CG32445 +,CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-555 1370 chr3L 21656996 21657023 chr3L 21657089 21657115 7 93 6.5 2.5 4.5 1.3 119 chr3L 21656996 intron CG43980 + chr3L 21657056 intron CG43980 + chr3L 21657115 intron CG43980 + chr3L_7_21655001 chr3L_21655001 RAL-555 1371 chr3L 21742506 21742533 chr3L 21742608 21742637 11 103 4.0 1.0 2.5 3.1 131 chr3L 21742506 intergenic CG14572 + chr3L 21742572 intergenic CG14572 + chr3L 21742637 intergenic CG14572 + chr3L_11_21740001 chr3L_21740001 RAL-555 1372 chr3L 21767035 21767068 chr3L 21767114 21767149 15 81 2.5 3.5 3.0 3.8 114 chr3L 21767035 intron Syn1 - chr3L 21767092 intron Syn1 - chr3L 21767149 intron Syn1 - chr3L_15_21765001 chr3L_21765001 RAL-555 1373 chr3L 21787612 21787638 chr3L 21787690 21787716 10 78 3.5 6.0 4.8 1.7 104 chr3L 21787612 intergenic not near genes chr3L 21787664 intergenic not near genes chr3L 21787716 intergenic not near genes chr3L_10_21785001 chr3L_21785001 RAL-555 1374 chr3L 21799937 21799967 chr3L 21800021 21800052 8 84 3.5 5.0 4.2 1.5 115 chr3L 21799937 intergenic not near genes chr3L 21799994 intergenic not near genes chr3L 21800052 intergenic not near genes chr3L_8_21795001 chr3L_21795001 RAL-555 1375 chr3L 21836731 21836761 chr3L 21836817 21836847 9 86 1.5 5.0 3.2 2.1 116 chr3L 21836731 3` UTR P5CDh1 - chr3L 21836789 3` UTR P5CDh1 - chr3L 21836847 3` UTR P5CDh1 - chr3L_9_21835001 chr3L_21835001 RAL-555 1376 chr3L 21849498 21849532 chr3L 21849580 21849614 11 82 3.0 2.5 2.8 2.9 116 chr3L 21849498 intron mub + chr3L 21849556 intron mub + chr3L 21849614 intron mub + chr3L_11_21845001 chr3L_21845001 RAL-555 1377 chr3L 21873478 21873502 chr3L 21873562 21873588 10 85 2.5 3.0 2.8 2.6 110 chr3L 21873478 intron mub + chr3L 21873533 intron mub + chr3L 21873588 intron mub + chr3L_10_21870001 chr3L_21870001 RAL-555 1378 chr3L 21905333 21905366 chr3L 21905412 21905446 9 79 4.5 3.0 3.8 1.9 113 chr3L 21905333 intron mub + chr3L 21905390 intron mub + chr3L 21905446 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-555 1379 chr3L 21954228 21954233 chr3L 23611200 23611206 5 1656973 18.0 12.5 15.2 0.3 1656978 chr3L 21954228 intergenic not near genes chr3L 22782717 intron SPoCk + chr3L 23611206 intron AGO3 + chr3L_5_22780001 chr3L_22780001 RAL-555 1380 chr3L 21991119 21991150 chr3L 21991221 21991253 14 103 4.5 2.5 3.5 3.1 134 chr3L 21991119 intergenic not near genes chr3L 21991186 intergenic not near genes chr3L 21991253 intergenic not near genes chr3L_14_21990001 chr3L_21990001 RAL-555 1381 chr3L 21994437 21994469 chr3L 21994518 21994550 12 81 1.0 0.5 0.8 6.7 113 chr3L 21994437 intergenic not near genes chr3L 21994494 intergenic not near genes chr3L 21994550 intergenic not near genes chr3L_12_21990001 chr3L_21990001 RAL-555 1382 chr3L 22010631 22010660 chr3L 22010780 22010809 5 149 1.0 3.5 2.2 1.6 178 chr3L 22010631 intergenic not near genes chr3L 22010720 intergenic not near genes chr3L 22010809 intergenic not near genes chr3L_5_22010001 chr3L_22010001 RAL-555 1383 chr3L 22012348 22012378 chr3L 22012503 22012533 8 155 2.0 4.0 3.0 2.0 185 chr3L 22012348 intergenic not near genes chr3L 22012440 intergenic not near genes chr3L 22012533 intergenic not near genes chr3L_8_22010001 chr3L_22010001 RAL-555 1384 chr3L 22018712 22018734 chr3L 22018791 22018812 7 78 1.5 1.0 1.2 3.2 100 chr3L 22018712 intergenic not near genes chr3L 22018762 intergenic not near genes chr3L 22018812 intergenic not near genes chr3L_7_22015001 chr3L_22015001 RAL-555 1385 chr3L 22023216 22023246 chr3L 22023307 22023337 8 91 1.0 2.5 1.8 2.9 121 chr3L 22023216 intergenic not near genes chr3L 22023276 intergenic not near genes chr3L 22023337 intergenic not near genes chr3L_8_22020001 chr3L_22020001 RAL-555 1386 chr3L 22092063 22092093 chr3L 22092161 22092192 5 98 4.0 3.5 3.8 1.0 129 chr3L 22092063 intergenic not near genes chr3L 22092128 intergenic not near genes chr3L 22092192 intergenic not near genes chr3L_5_22090001 chr3L_22090001 RAL-555 1387 chr3L 22099677 22099708 chr3L 22105863 22105894 3S18 8 6185 3.0 3.0 3.0 2.0 6217 chr3L 22099677 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-555 1388 chr3L 22130500 22130521 chr3L 22130646 22130667 6 146 1.5 2.5 2.0 2.0 167 chr3L 22130500 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130667 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-555 1389 chr3L 22270010 22270011 chr3L 22908066 22908066 8 638056 18.0 19.5 18.8 0.4 638056 chr3L 22270010 intron Csp + chr3L 22589038 intron CG14459 - chr3L 22908066 intergenic not near genes chr3L_8_22585001 chr3L_22585001 RAL-555 1390 chr3L 22411384 22411399 chr3L 22411455 22411476 5 74 3.0 2.0 2.5 1.4 92 chr3L 22411384 intergenic not near genes chr3L 22411430 intergenic not near genes chr3L 22411476 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-555 1391 chr3L 22447195 22447234 chr3L 22447286 22447325 13 91 2.5 4.5 3.5 2.9 130 chr3L 22447195 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_13_22445001 chr3L_22445001 RAL-555 1392 chr3L 22522698 22522729 chr3L 22522775 22522806 14 77 3.0 4.5 3.8 2.9 108 chr3L 22522698 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522806 intergenic not near genes chr3L_14_22520001 chr3L_22520001 RAL-555 1393 chr3L 22554423 22554456 chr3L 22554498 22554532 11 76 0.5 1.5 1.0 5.5 109 chr3L 22554423 intergenic not near genes chr3L 22554478 intergenic not near genes chr3L 22554532 intergenic not near genes chr3L_11_22550001 chr3L_22550001 RAL-555 1394 chr3L 22555772 22555794 chr3L 22563242 22563264 blood 6 7469 1.0 0.0 0.5 4.0 7492 chr3L 22555772 intergenic not near genes chr3L 22559518 intergenic not near genes chr3L 22563264 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-555 1395 chr3L 22569577 22569595 chr3L 22569675 22569693 5 98 3.0 2.5 2.8 1.3 116 chr3L 22569577 intergenic not near genes chr3L 22569635 intergenic not near genes chr3L 22569693 intergenic not near genes chr3L_5_22565001 chr3L_22565001 RAL-555 1396 chr3L 22570426 22570443 chr3L 22570570 22570587 7 144 9.5 5.0 7.2 0.9 161 chr3L 22570426 intergenic not near genes chr3L 22570506 intergenic not near genes chr3L 22570587 intergenic not near genes chr3L_7_22570001 chr3L_22570001 RAL-555 1397 chr3L 22577626 22577648 chr3L 22582414 22582436 Doc 11 4787 2.0 5.5 3.8 2.3 4810 chr3L 22577626 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 RAL-555 1398 chr3L 22617190 22617222 chr3L 22624640 22624674 blood 9 7452 1.0 3.0 2.0 3.0 7484 chr3L 22617190 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-555 1399 chr3L 22678082 22678085 chr3L 22678175 22678178 4 92 6.0 2.0 4.0 0.8 96 chr3L 22678082 intron CG14457 + chr3L 22678130 intron CG14457 + chr3L 22678178 intron CG14457 + chr3L_4_22675001 chr3L_22675001 RAL-555 1400 chr3L 22678086 22678110 chr3L 22678173 22678203 8 91 2.0 2.0 2.0 2.7 117 chr3L 22678086 intron CG14457 + chr3L 22678144 intron CG14457 + chr3L 22678203 intron CG14457 + chr3L_8_22675001 chr3L_22675001 RAL-555 1401 chr3L 22689094 22689128 chr3L 22689182 22689216 5 88 1.5 1.5 1.5 2.0 122 chr3L 22689094 intergenic not near genes chr3L 22689155 intergenic not near genes chr3L 22689216 intergenic not near genes chr3L_5_22685001 chr3L_22685001 RAL-555 1402 chr3L 22761383 22761419 chr3L 22766817 22766851 Ivk 15 5433 7.0 4.0 5.5 2.3 5468 chr3L 22761383 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_15_22760001 chr3L_22760001 RAL-555 1403 chr3L 22838596 22838612 chr3L 22838677 22838693 4 80 6.0 4.5 5.2 0.6 97 chr3L 22838596 intergenic CG11226 + chr3L 22838644 intergenic CG11226 + chr3L 22838693 intergenic not near genes chr3L_4_22835001 chr3L_22835001 RAL-555 1404 chr3L 22853462 22853722 chr3L 22853549 22853803 22 86 1.0 6.5 3.8 4.6 341 chr3L 22853462 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853803 5` UTR CR43426 + chr3L_22_22850001 chr3L_22850001 RAL-555 1405 chr3L 22865989 22866011 chr3L 22867122 22867143 Doc 5 1133 2.0 2.5 2.2 1.6 1154 chr3L 22865989 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867143 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-555 1406 chr3L 19220635 19220637 chr3L 22908066 22908066 4 3687430 14.0 19.5 16.8 0.2 3687431 chr3L 19220635 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-555 1407 chr3L 19220633 19220636 chr3L 22908067 22908067 8 3687432 14.0 20.0 17.0 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-555 1408 chr3L 22909025 22909051 chr3L 22910195 22910223 7 1172 2.0 3.0 2.5 2.0 1198 chr3L 22909025 intergenic CR45661 + chr3L 22909624 5` UTR CR45661 + chr3L 22910223 intergenic CG12768 + chr3L_7_22905001 chr3L_22905001 RAL-555 1409 chr3L 22989864 22989893 chr3L 22996835 22996867 297 9 6973 1.0 1.5 1.2 4.1 7003 chr3L 22989864 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996867 intergenic not near genes chr3L_9_22990001 chr3L_22990001 RAL-555 1410 chr3L 22908066 22908066 chr3L 23657065 23657066 11 748999 19.5 5.5 12.5 0.8 749000 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657066 intron AGO3 + chr3L_11_23280001 chr3L_23280001 RAL-555 1411 chr3L 23690150 23690181 chr3L 23690909 23690939 8 759 1.5 3.5 2.5 2.3 789 chr3L 23690150 intergenic CR45174 - chr3L 23690544 intergenic CR45174 - chr3L 23690939 3` UTR CR45174 - chr3L_8_23690001 chr3L_23690001 RAL-555 1412 chr3L 23750930 23750962 chr3L 23751131 23751163 6 201 22.0 9.0 15.5 0.4 233 chr3L 23750930 intergenic not near genes chr3L 23751046 intergenic not near genes chr3L 23751163 intergenic not near genes chr3L_6_23750001 chr3L_23750001 RAL-555 1413 chr3L 23824025 23824038 chr3L 23824438 23824451 4 412 5.0 1.0 3.0 1.0 426 chr3L 23824025 intergenic not near genes chr3L 23824238 intergenic not near genes chr3L 23824451 intergenic not near genes chr3L_4_23820001 chr3L_23820001 RAL-555 1414 chr3L 23875535 23875554 chr3L 23875615 23875635 4 80 2.5 1.5 2.0 1.3 100 chr3L 23875535 intron CG40470 - chr3L 23875585 intron CG40470 - chr3L 23875635 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-555 1415 chr3L 24012410 24012433 chr3L 24020751 24020774 roo 10 8341 3.0 2.0 2.5 2.9 8364 chr3L 24012410 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020774 intergenic not near genes chr3L_10_24015001 chr3L_24015001 RAL-555 1416 chr3L 24152559 24152567 chr3L 24152651 24152654 5 90 3.0 4.5 3.8 1.0 95 chr3L 24152559 intron Snap25 + chr3L 24152606 intron Snap25 + chr3L 24152654 intron Snap25 + chr3L_5_24150001 chr3L_24150001 RAL-555 1417 chr3L 24168793 24168811 chr3L 24176114 24176139 ZAM 5 7327 2.5 3.0 2.8 1.3 7346 chr3L 24168793 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176139 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-555 1418 chr3L 22908066 22908066 chr3L 24226774 24226777 7 1318709 19.5 12.5 16.0 0.4 1318711 chr3L 22908066 intergenic not near genes chr3L 23567422 intron AGO3 + chr3L 24226777 intron Snap25 + chr3L_7_23565001 chr3L_23565001 RAL-555 1419 chr3L 22908066 22908066 chr3L 24750395 24750408 17.6 4 1842336 19.5 15.5 17.5 0.2 1842342 chr3L 22908066 intergenic not near genes chr3L 23829237 intergenic not near genes chr3L 24750408 intron scro + chr3L_4_23825001 chr3L_23825001 RAL-555 1420 chr3L 18198930 18198930 chr3L 24821492 24821492 5 6622562 11.0 10.5 10.8 0.4 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-555 1421 chr3L 25331636 25331652 chr3L 25331727 25331743 5 91 3.5 1.5 2.5 1.4 107 chr3L 25331636 intergenic not near genes chr3L 25331690 intergenic not near genes chr3L 25331743 intergenic not near genes chr3L_5_25330001 chr3L_25330001 RAL-555 1422 chr3L 22908066 22908067 chr3L 26014451 26014453 Porto1 8 3106385 19.5 5.0 12.2 0.6 3106387 chr3L 22908066 intergenic not near genes chr3L 24461260 intergenic not near genes chr3L 26014453 intergenic CG40178 - chr3L_8_24460001 chr3L_24460001 RAL-555 1423 chr3L 22908066 22908067 chr3L 27698695 27698695 micropia 6 4790628 19.5 0.0 9.8 0.6 4790629 chr3L 22908066 intergenic not near genes chr3L 25303380 intron CG40467 - chr3L 27698695 intergenic not near genes chr3L_6_25300001 chr3L_25300001 RAL-555 1424 chr3R 2534138 2534160 chr3R 2541706 2541729 8 7566 11.5 10.5 11.0 0.7 7591 chr3R 2534138 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-555 1425 chr3R 2556879 2556909 chr3R 2557612 2557642 5 733 15.5 14.0 14.8 0.3 763 chr3R 2556879 intron CG41056 - chr3R 2557260 intron CG41056 - chr3R 2557642 intron CG41056 - chr3R_5_2555001 chr3R_2555001 RAL-555 1426 chr3R 4063816 4063828 chr3R 4069096 4069108 5 5280 5.5 8.5 7.0 0.6 5292 chr3R 4063816 intergenic not near genes chr3R 4066462 intergenic not near genes chr3R 4069108 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-555 1427 chr3R 4132908 4132928 chr3R 4133062 4133082 5 154 1.0 2.5 1.8 1.8 174 chr3R 4132908 5` UTR Gfat1 + chr3R 4132995 intron Gfat1 + chr3R 4133082 intron Gfat1 + chr3R_5_4130001 chr3R_4130001 RAL-555 1428 chr3R 4206071 4206102 chr3R 4211646 4211677 mdg3 8 5575 2.0 2.0 2.0 2.7 5606 chr3R 4206071 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-555 1429 chr3R 4366759 4366785 chr3R 4375142 4375168 roo 11 8383 5.0 6.0 5.5 1.7 8409 chr3R 4366759 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375168 5` UTR CR44922 + chr3R_11_4370001 chr3R_4370001 RAL-555 1430 chr3R 4408414 4408444 chr3R 4412718 4412747 Juan 5 4304 1.5 3.5 2.5 1.4 4333 chr3R 4408414 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412747 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-555 1431 chr3R 4698248 4698279 chr3R 4698337 4698367 8 88 0.5 2.5 1.5 3.2 119 chr3R 4698248 exon CG43427 + chr3R 4698308 intron CG43427 + chr3R 4698367 intron CG43427 + chr3R_8_4695001 chr3R_4695001 RAL-555 1432 chr3R 4719478 4719493 chr3R 4719686 4719701 5 208 2.0 3.5 2.8 1.3 223 chr3R 4719478 3` UTR Nep2 - chr3R 4719590 3` UTR Nep2 - chr3R 4719701 3` UTR Nep2 - chr3R_5_4715001 chr3R_4715001 RAL-555 1433 chr3R 4753240 4753263 chr3R 4757543 4757566 F-element 7 4303 4.0 1.0 2.5 2.0 4326 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755403 intron,intron atms +,CG44098 - chr3R 4757566 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-555 1434 chr3R 4764462 4764489 chr3R 4764695 4764722 15 233 4.0 6.0 5.0 2.5 260 chr3R 4764462 intron,intron atms +,CG44098 - chr3R 4764592 intron,intron atms +,CG44098 - chr3R 4764722 intron,intron atms +,CG44098 - chr3R_15_4760001 chr3R_4760001 RAL-555 1435 chr3R 4769164 4769187 chr3R 4769242 4769265 7 78 1.0 2.5 1.8 2.5 101 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-555 1436 chr3R 4887483 4887511 chr3R 4894860 4894887 rover 4 7377 2.5 2.5 2.5 1.1 7404 chr3R 4887483 intergenic not near genes chr3R 4891185 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-555 1437 chr3R 4896294 4896323 chr3R 4896387 4896416 9 93 3.0 2.0 2.5 2.6 122 chr3R 4896294 intergenic CR45580 + chr3R 4896355 intergenic CR45580 + chr3R 4896416 5` UTR CR45580 + chr3R_9_4895001 chr3R_4895001 RAL-555 1438 chr3R 4951314 4951340 chr3R 4951411 4951437 11 97 4.5 3.5 4.0 2.2 123 chr3R 4951314 intron UbcD6 - chr3R 4951376 intron UbcD6 - chr3R 4951437 intron UbcD6 - chr3R_11_4950001 chr3R_4950001 RAL-555 1439 chr3R 4966009 4966036 chr3R 4966100 4966128 11 92 2.0 7.5 4.8 1.9 119 chr3R 4966009 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966128 intron CG1124 + chr3R_11_4965001 chr3R_4965001 RAL-555 1440 chr3R 4975941 4975966 chr3R 4976041 4976067 7 100 2.0 1.5 1.8 2.5 126 chr3R 4975941 intergenic not near genes chr3R 4976004 intergenic not near genes chr3R 4976067 intergenic not near genes chr3R_7_4975001 chr3R_4975001 RAL-555 1441 chr3R 4984294 4984313 chr3R 4984386 4984405 7 92 3.0 0.5 1.8 2.5 111 chr3R 4984294 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984350 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984405 intergenic CR43424 -,CG14662 - chr3R_7_4980001 chr3R_4980001 RAL-555 1442 chr3R 5045843 5045873 chr3R 5052945 5052975 HMS-Beagle 6 7102 0.5 1.5 1.0 3.0 7132 chr3R 5045843 intron CR43635 - chr3R 5049409 intergenic not near genes chr3R 5052975 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-555 1443 chr3R 5067985 5068009 chr3R 5073502 5073526 mdg3 6 5517 4.5 1.0 2.8 1.6 5541 chr3R 5067985 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-555 1444 chr3R 5115010 5115048 chr3R 5115104 5115141 11 93 1.5 1.5 1.5 4.4 131 chr3R 5115010 intergenic not near genes chr3R 5115076 intergenic not near genes chr3R 5115141 intergenic not near genes chr3R_11_5115001 chr3R_5115001 RAL-555 1445 chr3R 5203496 5203527 chr3R 5203574 5203606 8 79 2.0 3.5 2.8 2.1 110 chr3R 5203496 intron cno - chr3R 5203551 intron cno - chr3R 5203606 intron cno - chr3R_8_5200001 chr3R_5200001 RAL-555 1446 chr3R 5327187 5327208 chr3R 5327264 5327284 9 77 6.5 1.5 4.0 1.8 97 chr3R 5327187 intron mtd - chr3R 5327236 intron mtd - chr3R 5327284 intron mtd - chr3R_9_5325001 chr3R_5325001 RAL-555 1447 chr3R 5338396 5338431 chr3R 5343573 5343607 Rt1c 11 5177 4.5 6.5 5.5 1.7 5211 chr3R 5338396 intron mtd - chr3R 5341002 intron mtd - chr3R 5343607 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-555 1448 chr3R 5445962 5445993 chr3R 5452422 5452453 Burdock 12 6460 4.0 3.5 3.8 2.5 6491 chr3R 5445962 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_12_5445001 chr3R_5445001 RAL-555 1449 chr3R 5696134 5696138 chr3R 5696230 5696234 4 96 1.5 5.5 3.5 0.9 100 chr3R 5696134 intron plx + chr3R 5696184 intron plx + chr3R 5696234 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-555 1450 chr3R 5726089 5726119 chr3R 5726250 5726281 5 162 2.5 4.0 3.2 1.2 192 chr3R 5726089 intergenic not near genes chr3R 5726185 intergenic not near genes chr3R 5726281 intergenic not near genes chr3R_5_5725001 chr3R_5725001 RAL-555 1451 chr3R 5746013 5746038 chr3R 5746254 5746279 pogo 4 241 3.0 3.0 3.0 1.0 266 chr3R 5746013 3` UTR Madm + chr3R 5746146 3` UTR Madm + chr3R 5746279 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-555 1452 chr3R 5772376 5772396 chr3R 5772534 5772554 7 158 4.0 3.0 3.5 1.6 178 chr3R 5772376 intron CG2082 - chr3R 5772465 intron CG2082 - chr3R 5772554 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-555 1453 chr3R 5809114 5809135 chr3R 5809355 5809376 pogo 6 241 2.5 1.5 2.0 2.0 262 chr3R 5809114 3` UTR CG11000 + chr3R 5809245 3` UTR CG11000 + chr3R 5809376 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-555 1454 chr3R 5822380 5822412 chr3R 5823547 5823579 1360 7 1167 1.0 1.5 1.2 3.2 1199 chr3R 5822380 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-555 1455 chr3R 5846876 5846898 chr3R 5846952 5846974 7 76 2.0 1.5 1.8 2.5 98 chr3R 5846876 intergenic CG1213 +,CG14676 + chr3R 5846925 intergenic CG14676 +,CG1213 + chr3R 5846974 intergenic CG14676 +,CG1213 + chr3R_7_5845001 chr3R_5845001 RAL-555 1456 chr3R 5895953 5895981 chr3R 5896167 5896195 5 213 1.0 3.0 2.0 1.7 242 chr3R 5895953 intron CG34113 - chr3R 5896074 intron CG34113 - chr3R 5896195 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-555 1457 chr3R 5927559 5927588 chr3R 5927799 5927828 pogo 12 240 2.0 3.0 2.5 3.4 269 chr3R 5927559 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_12_5925001 chr3R_5925001 RAL-555 1458 chr3R 5947963 5947990 chr3R 5948056 5948084 7 94 5.0 0.0 2.5 2.0 121 chr3R 5947963 intron CG34113 - chr3R 5948024 intron CG34113 - chr3R 5948084 intron CG34113 - chr3R_7_5945001 chr3R_5945001 RAL-555 1459 chr3R 6015972 6015994 chr3R 6024453 6024475 Tirant 6 8481 2.0 5.0 3.5 1.3 8503 chr3R 6015972 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-555 1460 chr3R 6048449 6048477 chr3R 6048532 6048560 11 83 3.0 3.5 3.2 2.6 111 chr3R 6048449 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048560 intergenic not near genes chr3R_11_6045001 chr3R_6045001 RAL-555 1461 chr3R 6110446 6110474 chr3R 6110630 6110658 10 184 2.5 1.5 2.0 3.3 212 chr3R 6110446 exon Obp83ef - chr3R 6110552 intron Obp83ef - chr3R 6110658 intron Obp83ef - chr3R_10_6110001 chr3R_6110001 RAL-555 1462 chr3R 6121166 6121181 chr3R 6121384 6121399 BS 5 217 0.0 6.0 3.0 1.2 233 chr3R 6121166 intergenic not near genes chr3R 6121282 intergenic not near genes chr3R 6121399 intergenic not near genes chr3R_5_6120001 chr3R_6120001 RAL-555 1463 chr3R 6158507 6158528 chr3R 6167090 6167110 Tirant 6 8583 7.0 2.0 4.5 1.1 8603 chr3R 6158507 intergenic not near genes chr3R 6162808 intergenic not near genes chr3R 6167110 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-555 1464 chr3R 6171152 6171180 chr3R 6171514 6171542 6 362 2.0 3.0 2.5 1.7 390 chr3R 6171152 intergenic not near genes chr3R 6171347 intergenic not near genes chr3R 6171542 intergenic not near genes chr3R_6_6170001 chr3R_6170001 RAL-555 1465 chr3R 6175183 6175203 chr3R 6182455 6182475 HMS-Beagle2 7 7271 1.5 2.0 1.8 2.5 7292 chr3R 6175183 intergenic Osi1 + chr3R 6178829 intron CR45194 + chr3R 6182475 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-555 1466 chr3R 6275480 6275509 chr3R 6275558 6275586 6 78 2.0 2.5 2.2 1.9 106 chr3R 6275480 intergenic not near genes chr3R 6275533 intergenic not near genes chr3R 6275586 intergenic not near genes chr3R_6_6275001 chr3R_6275001 RAL-555 1467 chr3R 6334789 6334807 chr3R 6334887 6334905 6 98 1.0 1.5 1.2 2.7 116 chr3R 6334789 intergenic not near genes chr3R 6334847 intergenic not near genes chr3R 6334905 intergenic Osi19 + chr3R_6_6330001 chr3R_6330001 RAL-555 1468 chr3R 6578881 6578908 chr3R 6579001 6579028 9 120 3.5 4.5 4.0 1.8 147 chr3R 6578881 intron dpr11 - chr3R 6578954 intron dpr11 - chr3R 6579028 intron dpr11 - chr3R_9_6575001 chr3R_6575001 RAL-555 1469 chr3R 6737505 6737532 chr3R 6739292 6739319 Doc 10 1787 2.0 2.5 2.2 3.1 1814 chr3R 6737505 intron pb - chr3R 6738412 intron pb - chr3R 6739319 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-555 1470 chr3R 6957405 6957421 chr3R 6957657 6957673 11 252 2.0 4.5 3.2 2.6 268 chr3R 6957405 intron Antp - chr3R 6957539 intron Antp - chr3R 6957673 intron Antp - chr3R_11_6955001 chr3R_6955001 RAL-555 1471 chr3R 6978881 6978915 chr3R 6978966 6979000 10 85 1.5 1.0 1.2 4.5 119 chr3R 6978881 intron Antp - chr3R 6978940 intron Antp - chr3R 6979000 intron Antp - chr3R_10_6975001 chr3R_6975001 RAL-555 1472 chr3R 7103287 7103315 chr3R 7103360 7103390 10 75 1.0 1.5 1.2 4.5 103 chr3R 7103287 intron Alh - chr3R 7103338 intron Alh - chr3R 7103390 intron Alh - chr3R_10_7100001 chr3R_7100001 RAL-555 1473 chr3R 7126503 7126530 chr3R 7126598 7126625 8 95 2.0 0.5 1.2 3.6 122 chr3R 7126503 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126564 3` UTR CG10068 - chr3R 7126625 3` UTR CG10068 - chr3R_8_7125001 chr3R_7125001 RAL-555 1474 chr3R 7173682 7173710 chr3R 7173762 7173790 7 80 2.5 4.0 3.2 1.7 108 chr3R 7173682 intron sas + chr3R 7173736 intron sas + chr3R 7173790 intron sas + chr3R_7_7170001 chr3R_7170001 RAL-555 1475 chr3R 7322225 7322238 chr3R 7322306 7322319 7 81 3.0 3.5 3.2 1.7 94 chr3R 7322225 intergenic not near genes chr3R 7322272 intergenic not near genes chr3R 7322319 intergenic not near genes chr3R_7_7320001 chr3R_7320001 RAL-555 1476 chr3R 7386999 7387012 chr3R 7387101 7387114 6 102 2.5 0.5 1.5 2.4 115 chr3R 7386999 intergenic CR45560 + chr3R 7387056 intergenic CR45560 + chr3R 7387114 intergenic CR45560 + chr3R_6_7385001 chr3R_7385001 RAL-555 1477 chr3R 7402043 7402074 chr3R 7402325 7402356 9 282 1.0 1.0 1.0 4.5 313 chr3R 7402043 intergenic not near genes chr3R 7402200 intergenic not near genes chr3R 7402356 intergenic not near genes chr3R_9_7400001 chr3R_7400001 RAL-555 1478 chr3R 7404948 7404972 chr3R 7405024 7405048 4 76 0.0 2.0 1.0 2.0 100 chr3R 7404948 intergenic not near genes chr3R 7404998 intergenic not near genes chr3R 7405048 intergenic not near genes chr3R_4_7400001 chr3R_7400001 RAL-555 1479 chr3R 7417882 7417910 chr3R 7417967 7417995 10 85 1.5 2.0 1.8 3.6 113 chr3R 7417882 intergenic not near genes chr3R 7417938 intergenic not near genes chr3R 7417995 intergenic not near genes chr3R_10_7415001 chr3R_7415001 RAL-555 1480 chr3R 7444735 7444765 chr3R 7444812 7444842 11 77 1.5 2.5 2.0 3.7 107 chr3R 7444735 intergenic not near genes chr3R 7444788 intergenic not near genes chr3R 7444842 intergenic not near genes chr3R_11_7440001 chr3R_7440001 RAL-555 1481 chr3R 7578733 7578767 chr3R 7578882 7578916 10 149 1.5 3.0 2.2 3.1 183 chr3R 7578733 intron CG34127 - chr3R 7578824 intron CG34127 - chr3R 7578916 intron CG34127 - chr3R_10_7575001 chr3R_7575001 RAL-555 1482 chr3R 7617993 7618018 chr3R 7618084 7618110 8 92 1.0 2.5 1.8 2.9 117 chr3R 7617993 intron CG34127 - chr3R 7618052 intron CG34127 - chr3R 7618110 intron CG34127 - chr3R_8_7615001 chr3R_7615001 RAL-555 1483 chr3R 7621548 7621562 chr3R 7621637 7621652 9 90 1.0 4.0 2.5 2.6 104 chr3R 7621548 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621652 intron CG34127 - chr3R_9_7620001 chr3R_7620001 RAL-555 1484 chr3R 7655008 7655032 chr3R 7655090 7655114 7 82 3.0 3.0 3.0 1.8 106 chr3R 7655008 intergenic not near genes chr3R 7655061 intergenic not near genes chr3R 7655114 intergenic not near genes chr3R_7_7655001 chr3R_7655001 RAL-555 1485 chr3R 7694576 7694609 chr3R 7713637 7713670 invader3 6 19061 2.0 2.0 2.0 2.0 19094 chr3R 7694576 3` UTR Nlg1 + chr3R 7704123 intergenic not near genes chr3R 7713670 intergenic not near genes chr3R_6_7700001 chr3R_7700001 RAL-555 1486 chr3R 7729465 7729488 chr3R 7737403 7737426 Stalker2 6 7938 6.0 5.0 5.5 0.9 7961 chr3R 7729465 intergenic not near genes chr3R 7733446 intergenic not near genes chr3R 7737426 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-555 1487 chr3R 7849654 7849673 chr3R 7850821 7850840 1360 9 1167 3.0 0.5 1.8 3.2 1186 chr3R 7849654 intron CG34384 + chr3R 7850247 intron CG34384 + chr3R 7850840 intron CG34384 + chr3R_9_7850001 chr3R_7850001 RAL-555 1488 chr3R 7857651 7857671 chr3R 7857734 7857754 5 81 2.5 3.0 2.8 1.3 103 chr3R 7857651 3` UTR CG17816 - chr3R 7857702 3` UTR CG17816 - chr3R 7857754 3` UTR CG17816 - chr3R_5_7855001 chr3R_7855001 RAL-555 1489 chr3R 8101769 8101783 chr3R 8104853 8104867 G2 4 3084 2.0 1.5 1.8 1.4 3098 chr3R 8101769 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104867 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-555 1490 chr3R 8107385 8107421 chr3R 8107519 8107554 9 133 1.5 2.0 1.8 3.2 169 chr3R 8107385 intron puc + chr3R 8107470 intron puc + chr3R 8107554 intron puc + chr3R_9_8105001 chr3R_8105001 RAL-555 1491 chr3R 8207558 8207587 chr3R 8208402 8208430 F-element 5 844 1.0 3.5 2.2 1.6 872 chr3R 8207558 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-555 1492 chr3R 8339242 8339247 chr3R 21907534 21907536 25 13568290 16.0 27.0 21.5 1.1 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_25_15120001 chr3R_15120001 RAL-555 1493 chr3R 8374168 8374173 chr3R 8374282 8374288 4 114 3.5 1.5 2.5 1.1 120 chr3R 8374168 intron CG45263 - chr3R 8374228 intron CG45263 - chr3R 8374288 intron CG45263 - chr3R_4_8370001 chr3R_8370001 RAL-555 1494 chr3R 8403005 8403037 chr3R 8412171 8412203 roo 8 9165 4.0 2.0 3.0 2.0 9198 chr3R 8403005 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-555 1495 chr3R 8541338 8541369 chr3R 8541419 8541450 15 81 2.5 2.0 2.2 4.7 112 chr3R 8541338 intergenic not near genes chr3R 8541394 intergenic not near genes chr3R 8541450 intergenic not near genes chr3R_15_8540001 chr3R_8540001 RAL-555 1496 chr3R 8570478 8570510 chr3R 8575114 8575146 HMS-Beagle 7 4635 2.5 3.5 3.0 1.8 4668 chr3R 8570478 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-555 1497 chr3R 8601766 8601797 chr3R 8610919 8610950 roo 4 9153 2.0 2.0 2.0 1.3 9184 chr3R 8601766 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-555 1498 chr3R 8707355 8707389 chr3R 8709796 8709830 jockey 15 2441 4.0 4.5 4.2 2.9 2475 chr3R 8707355 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709830 intergenic not near genes chr3R_15_8705001 chr3R_8705001 RAL-555 1499 chr3R 8856366 8856399 chr3R 8856443 8856476 11 77 2.0 4.0 3.0 2.8 110 chr3R 8856366 intron pyd - chr3R 8856421 intron pyd - chr3R 8856476 intron pyd - chr3R_11_8855001 chr3R_8855001 RAL-555 1500 chr3R 8917889 8917912 chr3R 8917969 8917992 7 80 1.5 3.5 2.5 2.0 103 chr3R 8917889 intron pyd - chr3R 8917940 intron pyd - chr3R 8917992 intron pyd - chr3R_7_8915001 chr3R_8915001 RAL-555 1501 chr3R 9082046 9082071 chr3R 9082140 9082165 8 93 3.0 2.5 2.8 2.1 119 chr3R 9082046 intron pum - chr3R 9082106 intron pum - chr3R 9082165 intron pum - chr3R_8_9080001 chr3R_9080001 RAL-555 1502 chr3R 9101851 9101870 chr3R 9101949 9101968 5 98 2.0 3.5 2.8 1.3 117 chr3R 9101851 intron pum - chr3R 9101910 intron pum - chr3R 9101968 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-555 1503 chr3R 9108870 9108882 chr3R 9108944 9108958 5 75 2.5 3.0 2.8 1.3 88 chr3R 9108870 intron pum - chr3R 9108914 intron pum - chr3R 9108958 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-555 1504 chr3R 9114413 9114438 chr3R 9115975 9116000 6 1562 1.0 0.5 0.8 3.3 1587 chr3R 9114413 intron pum - chr3R 9115206 intron pum - chr3R 9116000 intron pum - chr3R_6_9115001 chr3R_9115001 RAL-555 1505 chr3R 9134336 9134354 chr3R 9134423 9134443 6 89 4.5 3.0 3.8 1.2 107 chr3R 9134336 intron pum - chr3R 9134390 intron pum - chr3R 9134443 intron pum - chr3R_6_9130001 chr3R_9130001 RAL-555 1506 chr3R 9141140 9141171 chr3R 9141224 9141255 12 84 0.5 1.5 1.0 6.0 115 chr3R 9141140 intron pum - chr3R 9141198 intron pum - chr3R 9141255 intron pum - chr3R_12_9140001 chr3R_9140001 RAL-555 1507 chr3R 9319575 9319605 chr3R 9320010 9320040 jockey 10 435 4.0 4.5 4.2 1.9 465 chr3R 9319575 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320040 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-555 1508 chr3R 9323500 9323531 chr3R 9323591 9323619 4 89 0.5 2.0 1.2 1.8 119 chr3R 9323500 intron CG8861 - chr3R 9323560 intron CG8861 - chr3R 9323619 intron CG8861 - chr3R_4_9320001 chr3R_9320001 RAL-555 1509 chr3R 9361821 9361847 chr3R 9362062 9362088 pogo 6 241 2.5 3.0 2.8 1.6 267 chr3R 9361821 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362088 3` UTR CG45050 + chr3R_6_9360001 chr3R_9360001 RAL-555 1510 chr3R 9382815 9382847 chr3R 9382940 9382972 9 125 1.0 4.5 2.8 2.4 157 chr3R 9382815 intron FER - chr3R 9382894 intron FER - chr3R 9382972 intron FER - chr3R_9_9380001 chr3R_9380001 RAL-555 1511 chr3R 9608658 9608689 chr3R 9608923 9608955 7 266 3.0 1.5 2.2 2.2 297 chr3R 9608658 intron CG8312 + chr3R 9608806 intron CG8312 + chr3R 9608955 intron CG8312 + chr3R_7_9605001 chr3R_9605001 RAL-555 1512 chr3R 9611881 9611905 chr3R 9611963 9611987 6 82 4.0 0.0 2.0 2.0 106 chr3R 9611881 intron CG8312 + chr3R 9611934 intron CG8312 + chr3R 9611987 intron CG8312 + chr3R_6_9610001 chr3R_9610001 RAL-555 1513 chr3R 9620954 9620959 chr3R 21907534 21907535 8 12286579 15.5 27.0 21.2 0.4 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-555 1514 chr3R 9850834 9850866 chr3R 9851439 9851468 12 605 1.5 2.5 2.0 4.0 634 chr3R 9850834 intron Teh1 - chr3R 9851151 intron Teh1 - chr3R 9851468 intron Teh1 - chr3R_12_9850001 chr3R_9850001 RAL-555 1515 chr3R 9878022 9878027 chr3R 9878110 9878112 5 87 3.5 2.5 3.0 1.2 90 chr3R 9878022 intron,intron Glut4EF +,CR45029 - chr3R 9878067 intron,intron Glut4EF +,CR45029 - chr3R 9878112 intron,intron Glut4EF +,CR45029 - chr3R_5_9875001 chr3R_9875001 RAL-555 1516 chr3R 10073774 10073801 chr3R 10073880 10073910 6 108 1.5 1.0 1.2 2.7 136 chr3R 10073774 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-555 1517 chr3R 10192287 10192300 chr3R 10192473 10192486 6 186 3.0 5.0 4.0 1.2 199 chr3R 10192287 intron Syn + chr3R 10192386 intron Syn + chr3R 10192486 intron Syn + chr3R_6_10190001 chr3R_10190001 RAL-555 1518 chr3R 10231780 10231806 chr3R 10237357 10237383 mdg3 4 5577 2.5 3.0 2.8 1.1 5603 chr3R 10231780 intron CG42795 + chr3R 10234582 intron CG42795 + chr3R 10237383 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-555 1519 chr3R 10275564 10275582 chr3R 10275641 10275659 5 77 1.5 2.5 2.0 1.7 95 chr3R 10275564 intron CG43143 + chr3R 10275612 intron CG43143 + chr3R 10275659 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-555 1520 chr3R 10531874 10531896 chr3R 10531955 10531976 11 81 1.5 1.5 1.5 4.4 102 chr3R 10531874 intron hth - chr3R 10531925 intron hth - chr3R 10531976 intron hth - chr3R_11_10530001 chr3R_10530001 RAL-555 1521 chr3R 10593428 10593459 chr3R 10593515 10593542 5 84 2.5 1.5 2.0 1.7 114 chr3R 10593428 intron hth - chr3R 10593485 intron hth - chr3R 10593542 intron hth - chr3R_5_10590001 chr3R_10590001 RAL-555 1522 chr3R 10720560 10720589 chr3R 10720651 10720680 14 91 3.0 2.0 2.5 4.0 120 chr3R 10720560 intergenic not near genes chr3R 10720620 intergenic not near genes chr3R 10720680 intergenic not near genes chr3R_14_10720001 chr3R_10720001 RAL-555 1523 chr3R 10785814 10785842 chr3R 10785893 10785921 10 79 2.5 6.5 4.5 1.8 107 chr3R 10785814 intron Rbp1 + chr3R 10785868 intron Rbp1 + chr3R 10785921 intron Rbp1 + chr3R_10_10785001 chr3R_10785001 RAL-555 1524 chr3R 10804178 10804206 chr3R 10811709 10811738 17.6 8 7532 2.0 3.0 2.5 2.3 7560 chr3R 10804178 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811738 3` UTR CG14693 - chr3R_8_10805001 chr3R_10805001 RAL-555 1525 chr3R 10919685 10919718 chr3R 10919762 10919796 10 77 4.0 2.5 3.2 2.4 111 chr3R 10919685 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_10_10915001 chr3R_10915001 RAL-555 1526 chr3R 10920044 10920074 chr3R 10920122 10920152 8 78 1.0 4.0 2.5 2.3 108 chr3R 10920044 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-555 1527 chr3R 10979271 10979300 chr3R 10979353 10979382 5 81 1.0 3.0 2.0 1.7 111 chr3R 10979271 intron CG34114 + chr3R 10979326 intron CG34114 + chr3R 10979382 intron CG34114 + chr3R_5_10975001 chr3R_10975001 RAL-555 1528 chr3R 11059681 11059704 chr3R 11059763 11059784 7 81 0.5 4.5 2.5 2.0 103 chr3R 11059681 intergenic not near genes chr3R 11059732 intergenic not near genes chr3R 11059784 intergenic not near genes chr3R_7_11055001 chr3R_11055001 RAL-555 1529 chr3R 11104966 11104999 chr3R 11105052 11105085 18 85 4.0 3.5 3.8 3.8 119 chr3R 11104966 intergenic not near genes chr3R 11105026 intergenic not near genes chr3R 11105085 intergenic not near genes chr3R_18_11105001 chr3R_11105001 RAL-555 1530 chr3R 11151126 11151151 chr3R 11151321 11151346 4 195 2.0 4.0 3.0 1.0 220 chr3R 11151126 3` UTR Ugt86Di - chr3R 11151236 3` UTR Ugt86Di - chr3R 11151346 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-555 1531 chr3R 11242250 11242275 chr3R 11242338 11242363 15 88 2.5 1.0 1.8 5.4 113 chr3R 11242250 3` UTR CG17734 - chr3R 11242306 3` UTR CG17734 - chr3R 11242363 3` UTR CG17734 - chr3R_15_11240001 chr3R_11240001 RAL-555 1532 chr3R 11261230 11261250 chr3R 11261325 11261346 7 95 3.0 3.5 3.2 1.7 116 chr3R 11261230 intergenic not near genes chr3R 11261288 intergenic not near genes chr3R 11261346 intergenic not near genes chr3R_7_11260001 chr3R_11260001 RAL-555 1533 chr3R 11342541 11342571 chr3R 11342617 11342647 8 76 2.5 3.0 2.8 2.1 106 chr3R 11342541 intron pros + chr3R 11342594 intron pros + chr3R 11342647 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-555 1534 chr3R 11379235 11379261 chr3R 11388390 11388416 roo 7 9155 1.5 3.0 2.2 2.2 9181 chr3R 11379235 intron pros + chr3R 11383826 intron pros + chr3R 11388416 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-555 1535 chr3R 11406287 11406319 chr3R 11406364 11406396 7 77 0.5 3.0 1.8 2.5 109 chr3R 11406287 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406396 3` UTR pros + chr3R_7_11405001 chr3R_11405001 RAL-555 1536 chr3R 11455593 11455610 chr3R 11455719 11455736 8 126 4.0 4.5 4.2 1.5 143 chr3R 11455593 intron,intron CG17230 +,PGRP-LB - chr3R 11455664 intron,intron CG17230 +,PGRP-LB - chr3R 11455736 intron,intron CG17230 +,PGRP-LB - chr3R_8_11455001 chr3R_11455001 RAL-555 1537 chr3R 11461278 11461301 chr3R 11461358 11461381 8 80 1.0 3.0 2.0 2.7 103 chr3R 11461278 intron CG17230 + chr3R 11461330 intron CG17230 + chr3R 11461381 intron CG17230 + chr3R_8_11460001 chr3R_11460001 RAL-555 1538 chr3R 11468924 11468954 chr3R 11469006 11469037 15 83 5.5 2.5 4.0 3.0 113 chr3R 11468924 intergenic not near genes chr3R 11468980 intergenic not near genes chr3R 11469037 intergenic not near genes chr3R_15_11465001 chr3R_11465001 RAL-555 1539 chr3R 11491608 11491624 chr3R 11491683 11491700 6 76 2.5 2.0 2.2 1.9 92 chr3R 11491608 intergenic not near genes chr3R 11491654 intergenic not near genes chr3R 11491700 intergenic not near genes chr3R_6_11490001 chr3R_11490001 RAL-555 1540 chr3R 11694725 11694754 chr3R 11694818 11694847 13 93 3.5 6.0 4.8 2.2 122 chr3R 11694725 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694847 intergenic not near genes chr3R_13_11690001 chr3R_11690001 RAL-555 1541 chr3R 11734165 11734187 chr3R 11734284 11734304 7 119 3.5 1.0 2.2 2.2 139 chr3R 11734165 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734304 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-555 1542 chr3R 11763938 11763946 chr3R 11764018 11764026 4 80 2.5 4.5 3.5 0.9 88 chr3R 11763938 5` UTR Lk6 - chr3R 11763982 5` UTR Lk6 - chr3R 11764026 5` UTR Lk6 - chr3R_4_11760001 chr3R_11760001 RAL-555 1543 chr3R 11841066 11841097 chr3R 11846257 11846288 BS 7 5190 3.5 2.0 2.8 1.8 5222 chr3R 11841066 intron CG6959 - chr3R 11843677 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-555 1544 chr3R 11853435 11853473 chr3R 11853584 11853620 12 147 1.5 3.5 2.5 3.4 185 chr3R 11853435 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_12_11850001 chr3R_11850001 RAL-555 1545 chr3R 11853769 11853802 chr3R 11853873 11853907 16 105 2.0 2.0 2.0 5.3 138 chr3R 11853769 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853907 intron CG6959 - chr3R_16_11850001 chr3R_11850001 RAL-555 1546 chr3R 11914378 11914406 chr3R 11914463 11914491 6 85 3.0 4.5 3.8 1.2 113 chr3R 11914378 intron Cad87A - chr3R 11914434 intron Cad87A - chr3R 11914491 intron Cad87A - chr3R_6_11910001 chr3R_11910001 RAL-555 1547 chr3R 11916425 11916458 chr3R 11916504 11916537 11 79 3.0 4.0 3.5 2.4 112 chr3R 11916425 intron Cad87A - chr3R 11916481 intron Cad87A - chr3R 11916537 intron Cad87A - chr3R_11_11915001 chr3R_11915001 RAL-555 1548 chr3R 11919313 11919335 chr3R 11919397 11919422 10 87 2.0 3.5 2.8 2.6 109 chr3R 11919313 intron Cad87A - chr3R 11919368 intron Cad87A - chr3R 11919422 intron Cad87A - chr3R_10_11915001 chr3R_11915001 RAL-555 1549 chr3R 11930232 11930269 chr3R 11930316 11930353 28 84 3.0 4.0 3.5 6.2 121 chr3R 11930232 intron Cad87A - chr3R 11930292 intron Cad87A - chr3R 11930353 intron Cad87A - chr3R_28_11930001 chr3R_11930001 RAL-555 1550 chr3R 11943194 11943214 chr3R 11943546 11943566 9 352 1.5 2.0 1.8 3.2 372 chr3R 11943194 intron Cad87A - chr3R 11943380 intron Cad87A - chr3R 11943566 intron Cad87A - chr3R_9_11940001 chr3R_11940001 RAL-555 1551 chr3R 11945386 11945403 chr3R 11945483 11945500 7 98 5.0 2.5 3.8 1.5 114 chr3R 11945386 intron Cad87A - chr3R 11945443 intron Cad87A - chr3R 11945500 intron Cad87A - chr3R_7_11945001 chr3R_11945001 RAL-555 1552 chr3R 12022886 12022912 chr3R 12025063 12025087 pogo 10 2176 2.5 6.5 4.5 1.8 2201 chr3R 12022886 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025087 intergenic not near genes chr3R_10_12020001 chr3R_12020001 RAL-555 1553 chr3R 12098747 12098782 chr3R 12098838 12098869 7 89 1.0 0.0 0.5 4.7 122 chr3R 12098747 intron dpr17 + chr3R 12098808 intron dpr17 + chr3R 12098869 intron dpr17 + chr3R_7_12095001 chr3R_12095001 RAL-555 1554 chr3R 12134882 12134909 chr3R 12135010 12135038 14 128 3.0 1.5 2.2 4.4 156 chr3R 12134882 intergenic not near genes chr3R 12134960 intergenic not near genes chr3R 12135038 intergenic not near genes chr3R_14_12130001 chr3R_12130001 RAL-555 1555 chr3R 12247148 12247174 chr3R 12247233 12247259 8 85 4.0 4.0 4.0 1.6 111 chr3R 12247148 intergenic not near genes chr3R 12247204 intergenic not near genes chr3R 12247259 intergenic not near genes chr3R_8_12245001 chr3R_12245001 RAL-555 1556 chr3R 12253890 12253925 chr3R 12253973 12254008 12 83 4.5 1.0 2.8 3.2 118 chr3R 12253890 intergenic CG3942 + chr3R 12253949 intergenic CG3942 + chr3R 12254008 intergenic CG3942 + chr3R_12_12250001 chr3R_12250001 RAL-555 1557 chr3R 12344133 12344155 chr3R 12344210 12344232 6 76 1.5 2.5 2.0 2.0 99 chr3R 12344133 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344232 intergenic not near genes chr3R_6_12340001 chr3R_12340001 RAL-555 1558 chr3R 12635046 12635076 chr3R 12635128 12635157 11 81 2.5 2.0 2.2 3.4 111 chr3R 12635046 exon CG11598 + chr3R 12635102 exon CG11598 + chr3R 12635157 exon CG11598 + chr3R_11_12635001 chr3R_12635001 RAL-555 1559 chr3R 12725944 12725970 chr3R 12726049 12726075 7 104 0.5 2.5 1.5 2.8 131 chr3R 12725944 intergenic not near genes chr3R 12726010 intergenic not near genes chr3R 12726075 intergenic not near genes chr3R_7_12725001 chr3R_12725001 RAL-555 1560 chr3R 12733474 12733508 chr3R 12733551 12733585 8 77 4.0 3.5 3.8 1.7 111 chr3R 12733474 intergenic not near genes chr3R 12733530 intergenic not near genes chr3R 12733585 intergenic not near genes chr3R_8_12730001 chr3R_12730001 RAL-555 1561 chr3R 12781850 12781873 chr3R 12781953 12781976 6 103 0.0 2.0 1.0 3.0 126 chr3R 12781850 intron beat-Vc - chr3R 12781913 intron beat-Vc - chr3R 12781976 intron beat-Vc - chr3R_6_12780001 chr3R_12780001 RAL-555 1562 chr3R 12814244 12814266 chr3R 12814321 12814343 6 76 2.5 2.5 2.5 1.7 99 chr3R 12814244 intron CG31345 - chr3R 12814294 intron CG31345 - chr3R 12814343 intron CG31345 - chr3R_6_12810001 chr3R_12810001 RAL-555 1563 chr3R 12866495 12866520 chr3R 12866646 12866671 7 151 3.0 2.5 2.8 1.8 176 chr3R 12866495 intergenic not near genes chr3R 12866583 intergenic not near genes chr3R 12866671 intergenic not near genes chr3R_7_12865001 chr3R_12865001 RAL-555 1564 chr3R 12876952 12876985 chr3R 12877035 12877068 10 82 1.0 1.5 1.2 4.5 116 chr3R 12876952 intergenic not near genes chr3R 12877010 intergenic not near genes chr3R 12877068 intergenic not near genes chr3R_10_12875001 chr3R_12875001 RAL-555 1565 chr3R 12888295 12888329 chr3R 12888383 12888417 7 88 3.0 5.0 4.0 1.4 122 chr3R 12888295 intergenic not near genes chr3R 12888356 intergenic not near genes chr3R 12888417 intergenic not near genes chr3R_7_12885001 chr3R_12885001 RAL-555 1566 chr3R 12902384 12902409 chr3R 12902464 12902490 7 81 2.5 1.5 2.0 2.3 106 chr3R 12902384 intergenic not near genes chr3R 12902437 intergenic not near genes chr3R 12902490 intergenic not near genes chr3R_7_12900001 chr3R_12900001 RAL-555 1567 chr3R 12937495 12937523 chr3R 12937846 12937874 9 351 3.5 2.5 3.0 2.2 379 chr3R 12937495 intergenic not near genes chr3R 12937684 intergenic not near genes chr3R 12937874 intergenic not near genes chr3R_9_12935001 chr3R_12935001 RAL-555 1568 chr3R 12975330 12975343 chr3R 12975645 12975659 6 316 2.5 2.5 2.5 1.7 329 chr3R 12975330 intron CG7381 - chr3R 12975494 intron CG7381 - chr3R 12975659 intron CG7381 - chr3R_6_12975001 chr3R_12975001 RAL-555 1569 chr3R 13059963 13059977 chr3R 13060158 13060172 5 195 2.5 0.5 1.5 2.0 209 chr3R 13059963 intron sim + chr3R 13060068 intron sim + chr3R 13060172 intron sim + chr3R_5_13060001 chr3R_13060001 RAL-555 1570 chr3R 13143036 13143065 chr3R 13148609 13148642 mdg3 8 5576 3.5 2.5 3.0 2.0 5606 chr3R 13143036 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145839 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-555 1571 chr3R 13174557 13174566 chr3R 13174634 13174643 4 76 4.5 6.0 5.2 0.6 86 chr3R 13174557 intergenic not near genes chr3R 13174600 intergenic not near genes chr3R 13174643 intergenic not near genes chr3R_4_13170001 chr3R_13170001 RAL-555 1572 chr3R 13248657 13248677 chr3R 13248755 13248776 6 99 4.5 5.0 4.8 1.0 119 chr3R 13248657 intron Ace - chr3R 13248716 intron Ace - chr3R 13248776 intron Ace - chr3R_6_13245001 chr3R_13245001 RAL-555 1573 chr3R 13272056 13272075 chr3R 13272141 13272160 6 85 2.5 2.5 2.5 1.7 104 chr3R 13272056 intergenic CG8449 - chr3R 13272108 intergenic CG8449 - chr3R 13272160 intergenic CG8449 - chr3R_6_13270001 chr3R_13270001 RAL-555 1574 chr3R 13379131 13379161 chr3R 13379217 13379247 16 86 3.5 5.0 4.2 3.1 116 chr3R 13379131 intron CG9813 - chr3R 13379189 intron CG9813 - chr3R 13379247 intron CG9813 - chr3R_16_13375001 chr3R_13375001 RAL-555 1575 chr3R 13418668 13418684 chr3R 13418744 13418760 4 76 2.0 2.0 2.0 1.3 92 chr3R 13418668 intergenic not near genes chr3R 13418714 intergenic not near genes chr3R 13418760 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-555 1576 chr3R 13435391 13435419 chr3R 13435565 13435594 6 175 2.5 0.5 1.5 2.4 203 chr3R 13435391 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435594 intergenic not near genes chr3R_6_13435001 chr3R_13435001 RAL-555 1577 chr3R 13603055 13603075 chr3R 13603146 13603166 4 91 3.0 6.5 4.8 0.7 111 chr3R 13603055 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-555 1578 chr3R 13625697 13625721 chr3R 13625778 13625802 6 81 2.5 2.5 2.5 1.7 105 chr3R 13625697 intergenic not near genes chr3R 13625750 intergenic not near genes chr3R 13625802 intergenic not near genes chr3R_6_13625001 chr3R_13625001 RAL-555 1579 chr3R 13659728 13659841 chr3R 13659834 13659930 4 102 0.0 0.0 0.0 4.0 202 chr3R 13659728 intron Hrb87F - chr3R 13659829 intron Hrb87F - chr3R 13659930 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-555 1580 chr3R 13693027 13693028 chr3R 21907534 21907535 12 8214507 20.0 27.0 23.5 0.5 8214508 chr3R 13693027 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 RAL-555 1581 chr3R 13863684 13863713 chr3R 13863771 13863800 8 88 2.5 3.5 3.0 2.0 116 chr3R 13863684 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-555 1582 chr3R 13925987 13926012 chr3R 13926064 13926089 11 76 3.0 5.0 4.0 2.2 102 chr3R 13925987 intergenic not near genes chr3R 13926038 intergenic not near genes chr3R 13926089 intergenic not near genes chr3R_11_13925001 chr3R_13925001 RAL-555 1583 chr3R 13941422 13941448 chr3R 13941502 13941528 5 80 3.0 0.5 1.8 1.8 106 chr3R 13941422 intergenic not near genes chr3R 13941475 intergenic not near genes chr3R 13941528 intergenic not near genes chr3R_5_13940001 chr3R_13940001 RAL-555 1584 chr3R 13994308 13994326 chr3R 13994563 13994581 6 255 4.5 2.0 3.2 1.4 273 chr3R 13994308 intron rdx - chr3R 13994444 intron rdx - chr3R 13994581 intron rdx - chr3R_6_13990001 chr3R_13990001 RAL-555 1585 chr3R 14079649 14079674 chr3R 14079947 14079972 4 298 0.0 0.0 0.0 4.0 323 chr3R 14079649 intron foxo + chr3R 14079810 intron foxo + chr3R 14079972 intron foxo + chr3R_4_14075001 chr3R_14075001 RAL-555 1586 chr3R 14117437 14117471 chr3R 14117513 14117547 6 76 2.0 2.5 2.2 1.9 110 chr3R 14117437 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117547 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-555 1587 chr3R 14170166 14170176 chr3R 14170256 14170266 5 90 2.0 3.0 2.5 1.4 100 chr3R 14170166 3` UTR Dop1R1 - chr3R 14170216 3` UTR Dop1R1 - chr3R 14170266 3` UTR Dop1R1 - chr3R_5_14170001 chr3R_14170001 RAL-555 1588 chr3R 14180814 14180834 chr3R 14185579 14185598 F-element 7 4765 3.5 4.0 3.8 1.5 4784 chr3R 14180814 intron Dop1R1 - chr3R 14183206 intron Dop1R1 - chr3R 14185598 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-555 1589 chr3R 14246390 14246416 chr3R 14247886 14247912 jockey 4 1493 3.0 2.5 2.8 1.1 1522 chr3R 14246390 intergenic not near genes chr3R 14247151 intergenic not near genes chr3R 14247912 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-555 1590 chr3R 14403210 14403241 chr3R 14403294 14403325 12 84 1.0 2.0 1.5 4.8 115 chr3R 14403210 intron cv-c - chr3R 14403268 intron cv-c - chr3R 14403325 intron cv-c - chr3R_12_14400001 chr3R_14400001 RAL-555 1591 chr3R 14424580 14424601 chr3R 14424685 14424705 6 104 4.0 5.5 4.8 1.0 125 chr3R 14424580 intron cv-c - chr3R 14424642 intron cv-c - chr3R 14424705 intron cv-c - chr3R_6_14420001 chr3R_14420001 RAL-555 1592 chr3R 14472635 14472670 chr3R 14472731 14472766 13 95 1.0 1.0 1.0 6.5 131 chr3R 14472635 intron cv-c - chr3R 14472700 intron cv-c - chr3R 14472766 intron cv-c - chr3R_13_14470001 chr3R_14470001 RAL-555 1593 chr3R 14527405 14527415 chr3R 14527482 14527492 8 77 4.5 3.5 4.0 1.6 87 chr3R 14527405 intron Pde6 - chr3R 14527448 intron Pde6 - chr3R 14527492 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-555 1594 chr3R 14682877 14682881 chr3R 14682967 14682971 4 90 2.5 1.0 1.8 1.4 94 chr3R 14682877 intron Meltrin - chr3R 14682924 intron Meltrin - chr3R 14682971 intron Meltrin - chr3R_4_14680001 chr3R_14680001 RAL-555 1595 chr3R 14833478 14833509 chr3R 14834283 14834314 14 805 4.5 3.5 4.0 2.8 836 chr3R 14833478 intron btsz - chr3R 14833896 intron btsz - chr3R 14834314 intron btsz - chr3R_14_14830001 chr3R_14830001 RAL-555 1596 chr3R 14866892 14866914 chr3R 14866971 14866993 7 79 9.0 3.0 6.0 1.0 101 chr3R 14866892 intron btsz - chr3R 14866942 intron btsz - chr3R 14866993 intron btsz - chr3R_7_14865001 chr3R_14865001 RAL-555 1597 chr3R 14923726 14923744 chr3R 14923803 14923819 9 76 2.5 7.0 4.8 1.6 93 chr3R 14923726 3` UTR CR45598 - chr3R 14923772 intergenic CR45598 - chr3R 14923819 intergenic CR45598 - chr3R_9_14920001 chr3R_14920001 RAL-555 1598 chr3R 14978186 14978214 chr3R 14978313 14978342 4 128 4.0 4.5 4.2 0.8 156 chr3R 14978186 intergenic not near genes chr3R 14978264 intergenic not near genes chr3R 14978342 intergenic not near genes chr3R_4_14975001 chr3R_14975001 RAL-555 1599 chr3R 15032727 15032753 chr3R 15032806 15032831 9 79 2.5 1.5 2.0 3.0 104 chr3R 15032727 intergenic not near genes chr3R 15032779 intergenic not near genes chr3R 15032831 intergenic not near genes chr3R_9_15030001 chr3R_15030001 RAL-555 1600 chr3R 15041406 15041418 chr3R 15045189 15045200 Doc 5 3783 0.0 1.0 0.5 3.3 3794 chr3R 15041406 intergenic not near genes chr3R 15043303 intergenic not near genes chr3R 15045200 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-555 1601 chr3R 15059276 15059481 chr3R 15059470 15059568 BS 5 108 0.0 0.0 0.0 5.0 292 chr3R 15059276 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-555 1602 chr3R 15079812 15079834 chr3R 15080053 15080075 pogo 4 241 5.0 0.0 2.5 1.1 263 chr3R 15079812 3` UTR CG6966 - chr3R 15079944 3` UTR CG6966 - chr3R 15080075 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-555 1603 chr3R 15102492 15102504 chr3R 15109751 15109763 412 5 7259 7.0 2.5 4.8 0.9 7271 chr3R 15102492 intron CG42788 - chr3R 15106128 intron CG42788 - chr3R 15109763 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-555 1604 chr3R 15132057 15132081 chr3R 15135117 15135141 Juan 15 3060 13.5 12.0 12.8 1.1 3084 chr3R 15132057 intergenic CG42788 - chr3R 15133599 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_15_15130001 chr3R_15130001 RAL-555 1605 chr3R 15162550 15162570 chr3R 15167317 15167337 F-element 12 4767 7.0 1.5 4.2 2.3 4787 chr3R 15162550 intron Gyc88E + chr3R 15164944 intron Gyc88E + chr3R 15167337 intron Gyc88E + chr3R_12_15160001 chr3R_15160001 RAL-555 1606 chr3R 15278820 15278853 chr3R 15278907 15278940 11 87 2.5 2.5 2.5 3.1 120 chr3R 15278820 intergenic l(3)neo43 - chr3R 15278880 intergenic l(3)neo43 - chr3R 15278940 intergenic l(3)neo43 - chr3R_11_15275001 chr3R_15275001 RAL-555 1607 chr3R 15401272 15401292 chr3R 15406175 15406195 10 4903 16.5 38.5 27.5 0.4 4923 chr3R 15401272 3` UTR Rbp + chr3R 15403734 exon CG6125 - chr3R 15406195 intron CG6125 - chr3R_10_15400001 chr3R_15400001 RAL-555 1608 chr3R 15416251 15416280 chr3R 15416331 15416360 5 80 2.5 2.5 2.5 1.4 109 chr3R 15416251 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416360 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-555 1609 chr3R 15521957 15521991 chr3R 15522048 15522082 8 91 1.0 0.5 0.8 4.4 125 chr3R 15521957 intergenic not near genes chr3R 15522020 intergenic not near genes chr3R 15522082 intergenic not near genes chr3R_8_15520001 chr3R_15520001 RAL-555 1610 chr3R 15594654 15594676 chr3R 15594737 15594759 12 83 0.0 3.0 1.5 4.8 105 chr3R 15594654 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594759 intergenic not near genes chr3R_12_15590001 chr3R_15590001 RAL-555 1611 chr3R 15601167 15601196 chr3R 15608689 15608717 412 13 7521 7.0 3.0 5.0 2.2 7550 chr3R 15601167 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_13_15600001 chr3R_15600001 RAL-555 1612 chr3R 15691304 15691329 chr3R 15691391 15691416 7 87 0.0 1.5 0.8 3.9 112 chr3R 15691304 intergenic not near genes chr3R 15691360 intergenic not near genes chr3R 15691416 intergenic not near genes chr3R_7_15690001 chr3R_15690001 RAL-555 1613 chr3R 15765140 15765160 chr3R 15765305 15765325 10 165 2.0 4.0 3.0 2.5 185 chr3R 15765140 intergenic not near genes chr3R 15765232 intergenic not near genes chr3R 15765325 intergenic not near genes chr3R_10_15765001 chr3R_15765001 RAL-555 1614 chr3R 15773925 15773936 chr3R 15775227 15775238 5 1303 4.5 24.5 14.5 0.3 1313 chr3R 15773925 intergenic CR45206 -,CG4525 + chr3R 15774582 3` UTR,exon CR45206 -,CG4525 + chr3R 15775238 intron,3` UTR CG4525 +,CR45207 - chr3R_5_15770001 chr3R_15770001 RAL-555 1615 chr3R 15783734 15783763 chr3R 15784014 15784043 16 280 3.0 6.5 4.8 2.8 309 chr3R 15783734 intergenic not near genes chr3R 15783888 intergenic not near genes chr3R 15784043 intergenic not near genes chr3R_16_15780001 chr3R_15780001 RAL-555 1616 chr3R 15844114 15844131 chr3R 15844212 15844229 5 98 2.0 3.5 2.8 1.3 115 chr3R 15844114 3` UTR spn-E + chr3R 15844172 3` UTR spn-E + chr3R 15844229 3` UTR spn-E + chr3R_5_15840001 chr3R_15840001 RAL-555 1617 chr3R 15872607 15872638 chr3R 15872895 15872926 11 288 0.5 1.5 1.0 5.5 319 chr3R 15872607 intron CG31183 - chr3R 15872766 intron CG31183 - chr3R 15872926 intron CG31183 - chr3R_11_15870001 chr3R_15870001 RAL-555 1618 chr3R 15948654 15948684 chr3R 15948741 15948770 7 87 5.0 4.5 4.8 1.2 116 chr3R 15948654 intron Sap47 + chr3R 15948712 intron Sap47 + chr3R 15948770 intron Sap47 + chr3R_7_15945001 chr3R_15945001 RAL-555 1619 chr3R 16033413 16033440 chr3R 16033494 16033521 4 81 1.0 2.0 1.5 1.6 108 chr3R 16033413 intron pnr + chr3R 16033467 intron pnr + chr3R 16033521 intron pnr + chr3R_4_16030001 chr3R_16030001 RAL-555 1620 chr3R 16189413 16189437 chr3R 16189816 16189840 invader4 9 403 4.0 1.5 2.8 2.4 427 chr3R 16189413 intron sra + chr3R 16189626 intron sra + chr3R 16189840 intron sra + chr3R_9_16185001 chr3R_16185001 RAL-555 1621 chr3R 16241787 16241819 chr3R 16242050 16242081 6 263 1.0 2.0 1.5 2.4 294 chr3R 16241787 intron tara + chr3R 16241934 intron tara + chr3R 16242081 intron tara + chr3R_6_16240001 chr3R_16240001 RAL-555 1622 chr3R 16246524 16246557 chr3R 16246599 16246633 9 76 0.0 4.0 2.0 3.0 109 chr3R 16246524 intron tara + chr3R 16246578 intron tara + chr3R 16246633 intron tara + chr3R_9_16245001 chr3R_16245001 RAL-555 1623 chr3R 16472579 16472604 chr3R 16472654 16472678 7 75 7.0 10.0 8.5 0.7 99 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472678 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-555 1624 chr3R 16520714 16520747 chr3R 16520796 16520827 14 81 5.0 3.0 4.0 2.8 113 chr3R 16520714 intron CG42342 + chr3R 16520770 intron CG42342 + chr3R 16520827 intron CG42342 + chr3R_14_16520001 chr3R_16520001 RAL-555 1625 chr3R 16731933 16731942 chr3R 16732013 16732022 4 80 1.0 2.0 1.5 1.6 89 chr3R 16731933 intron Ubx - chr3R 16731978 intron Ubx - chr3R 16732022 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-555 1626 chr3R 16756321 16756351 chr3R 16762512 16762542 diver 7 6190 4.5 2.0 3.2 1.7 6221 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762542 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-555 1627 chr3R 16782010 16782044 chr3R 16782091 16782123 10 80 4.5 5.5 5.0 1.7 113 chr3R 16782010 intergenic not near genes chr3R 16782066 intergenic not near genes chr3R 16782123 intergenic not near genes chr3R_10_16780001 chr3R_16780001 RAL-555 1628 chr3R 16795287 16795322 chr3R 16795377 16795410 10 89 3.0 1.5 2.2 3.1 123 chr3R 16795287 intergenic not near genes chr3R 16795348 intergenic not near genes chr3R 16795410 intergenic not near genes chr3R_10_16795001 chr3R_16795001 RAL-555 1629 chr3R 16816324 16816350 chr3R 16816496 16816521 5 172 1.0 2.5 1.8 1.8 197 chr3R 16816324 intron abd-A - chr3R 16816422 intron abd-A - chr3R 16816521 intron abd-A - chr3R_5_16815001 chr3R_16815001 RAL-555 1630 chr3R 16820255 16820279 chr3R 16820348 16820373 8 94 0.0 1.5 0.8 4.4 118 chr3R 16820255 intron abd-A - chr3R 16820314 intron abd-A - chr3R 16820373 intron abd-A - chr3R_8_16820001 chr3R_16820001 RAL-555 1631 chr3R 17059617 17059652 chr3R 17059697 17059732 15 80 6.5 5.0 5.8 2.2 115 chr3R 17059617 intron Dad + chr3R 17059674 intron Dad + chr3R 17059732 intron Dad + chr3R_15_17055001 chr3R_17055001 RAL-555 1632 chr3R 17268674 17268703 chr3R 17268796 17268825 8 120 2.0 3.0 2.5 2.3 151 chr3R 17268674 intergenic not near genes chr3R 17268750 intergenic not near genes chr3R 17268825 intergenic not near genes chr3R_8_17265001 chr3R_17265001 RAL-555 1633 chr3R 17271447 17271480 chr3R 17272342 17272375 4 895 2.5 1.5 2.0 1.3 928 chr3R 17271447 intergenic CR44258 - chr3R 17271911 intergenic not near genes chr3R 17272375 intergenic not near genes chr3R_4_17270001 chr3R_17270001 RAL-555 1634 chr3R 17294673 17294692 chr3R 17295101 17295120 BS 5 427 2.5 4.0 3.2 1.2 447 chr3R 17294673 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295120 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-555 1635 chr3R 17335161 17335183 chr3R 17335237 17335259 5 76 3.0 4.0 3.5 1.1 98 chr3R 17335161 intron beat-IIa - chr3R 17335210 intron beat-IIa - chr3R 17335259 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-555 1636 chr3R 17346247 17346247 chr3R 21907534 21907536 7 4561288 15.5 27.0 21.2 0.3 4561289 chr3R 17346247 intron beat-IIa - chr3R 19626892 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_7_19625001 chr3R_19625001 RAL-555 1637 chr3R 17346683 17346722 chr3R 17348246 17348283 F-element 8 1562 3.0 3.5 3.2 1.9 1600 chr3R 17346683 intron beat-IIa - chr3R 17347483 intron beat-IIa - chr3R 17348283 intron beat-IIa - chr3R_8_17345001 chr3R_17345001 RAL-555 1638 chr3R 17384026 17384041 chr3R 17384497 17384512 5 471 1.0 3.5 2.2 1.6 486 chr3R 17384026 intron,intron Brf -,lute + chr3R 17384269 intron,intron Brf -,lute + chr3R 17384512 intron,intron Brf -,lute + chr3R_5_17380001 chr3R_17380001 RAL-555 1639 chr3R 17389053 17389056 chr3R 21907534 21907534 5 4518480 4.0 27.0 15.5 0.3 4518481 chr3R 17389053 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-555 1640 chr3R 17461200 17461228 chr3R 17461282 17461310 6 82 1.5 2.0 1.8 2.1 110 chr3R 17461200 intergenic not near genes chr3R 17461255 intergenic not near genes chr3R 17461310 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-555 1641 chr3R 17569957 17569981 chr3R 17570044 17570067 5 86 1.0 5.0 3.0 1.2 110 chr3R 17569957 intergenic not near genes chr3R 17570012 intergenic not near genes chr3R 17570067 intergenic not near genes chr3R_5_17570001 chr3R_17570001 RAL-555 1642 chr3R 17571583 17571610 chr3R 17571664 17571691 7 81 2.0 3.0 2.5 2.0 108 chr3R 17571583 intergenic not near genes chr3R 17571637 intergenic not near genes chr3R 17571691 intergenic not near genes chr3R_7_17570001 chr3R_17570001 RAL-555 1643 chr3R 17591296 17591317 chr3R 17591731 17591753 F-element 4 435 2.0 4.0 3.0 1.0 457 chr3R 17591296 intergenic not near genes chr3R 17591524 intergenic not near genes chr3R 17591753 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-555 1644 chr3R 17638319 17638333 chr3R 17638805 17638817 roo 5 486 0.0 0.0 0.0 5.0 498 chr3R 17638319 intron CG43175 + chr3R 17638568 intron CG43175 + chr3R 17638817 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-555 1645 chr3R 17678587 17678616 chr3R 17678973 17679003 13 387 1.5 3.0 2.2 4.1 416 chr3R 17678587 intron alt - chr3R 17678795 intron alt - chr3R 17679003 intron alt - chr3R_13_17675001 chr3R_17675001 RAL-555 1646 chr3R 17734847 17734856 chr3R 17734961 17734970 5 114 2.0 2.0 2.0 1.7 123 chr3R 17734847 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17734970 intergenic not near genes chr3R_5_17730001 chr3R_17730001 RAL-555 1647 chr3R 17748360 17748383 chr3R 17748512 17748536 7 151 1.5 3.0 2.2 2.2 176 chr3R 17748360 intergenic not near genes chr3R 17748448 intergenic not near genes chr3R 17748536 intergenic not near genes chr3R_7_17745001 chr3R_17745001 RAL-555 1648 chr3R 17814766 17814797 chr3R 17814851 17814882 9 85 3.5 4.0 3.8 1.9 116 chr3R 17814766 intron tinc + chr3R 17814824 intron tinc + chr3R 17814882 intron tinc + chr3R_9_17810001 chr3R_17810001 RAL-555 1649 chr3R 17823210 17823234 chr3R 17823295 17823319 10 85 2.0 1.5 1.8 3.6 109 chr3R 17823210 intron tinc + chr3R 17823264 intron tinc + chr3R 17823319 intron tinc + chr3R_10_17820001 chr3R_17820001 RAL-555 1650 chr3R 17845205 17845219 chr3R 17845282 17845291 7 76 2.0 5.0 3.5 1.6 86 chr3R 17845205 intron tinc + chr3R 17845248 intron tinc + chr3R 17845291 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-555 1651 chr3R 17859382 17859414 chr3R 17859462 17859493 5 80 2.0 2.0 2.0 1.7 111 chr3R 17859382 intron tinc + chr3R 17859438 intron tinc + chr3R 17859493 intron tinc + chr3R_5_17855001 chr3R_17855001 RAL-555 1652 chr3R 17899089 17899108 chr3R 17899166 17899186 7 78 6.5 3.0 4.8 1.2 97 chr3R 17899089 intron Rim - chr3R 17899138 intron Rim - chr3R 17899186 intron Rim - chr3R_7_17895001 chr3R_17895001 RAL-555 1653 chr3R 17925852 17925888 chr3R 17927319 17927355 hobo 12 1466 2.5 5.0 3.8 2.5 1503 chr3R 17925852 intron cpo + chr3R 17926604 intron cpo + chr3R 17927355 intron cpo + chr3R_12_17925001 chr3R_17925001 RAL-555 1654 chr3R 17960688 17960716 chr3R 17960873 17960901 8 185 1.5 3.0 2.2 2.5 213 chr3R 17960688 intron cpo + chr3R 17960794 intron cpo + chr3R 17960901 intron cpo + chr3R_8_17960001 chr3R_17960001 RAL-555 1655 chr3R 18032796 18032805 chr3R 18040466 18040475 opus 4 7670 0.0 0.0 0.0 4.0 7679 chr3R 18032796 intergenic not near genes chr3R 18036636 intergenic not near genes chr3R 18040475 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-555 1656 chr3R 18061590 18061604 chr3R 18063158 18063172 F-element 5 1568 2.0 5.5 3.8 1.0 1582 chr3R 18061590 intergenic not near genes chr3R 18062381 intergenic not near genes chr3R 18063172 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-555 1657 chr3R 18068001 18068021 chr3R 18068083 18068103 7 82 0.0 2.0 1.0 3.5 102 chr3R 18068001 intergenic not near genes chr3R 18068052 intergenic not near genes chr3R 18068103 intergenic not near genes chr3R_7_18065001 chr3R_18065001 RAL-555 1658 chr3R 18303684 18303714 chr3R 18303771 18303801 10 86 4.0 2.5 3.2 2.4 117 chr3R 18303684 3` UTR PKD - chr3R 18303742 3` UTR PKD - chr3R 18303801 3` UTR PKD - chr3R_10_18300001 chr3R_18300001 RAL-555 1659 chr3R 18501593 18501628 chr3R 18501674 18501709 11 81 2.0 4.0 3.0 2.8 116 chr3R 18501593 intron fru - chr3R 18501651 intron fru - chr3R 18501709 intron fru - chr3R_11_18500001 chr3R_18500001 RAL-555 1660 chr3R 18528378 18528397 chr3R 18528462 18528484 4 86 3.0 3.0 3.0 1.0 106 chr3R 18528378 intron fru - chr3R 18528431 intron fru - chr3R 18528484 intron fru - chr3R_4_18525001 chr3R_18525001 RAL-555 1661 chr3R 18606501 18606530 chr3R 18610733 18610762 F-element 7 4232 3.0 3.5 3.2 1.7 4261 chr3R 18606501 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 RAL-555 1662 chr3R 18622781 18622804 chr3R 18622857 18622880 11 76 4.0 0.0 2.0 3.7 99 chr3R 18622781 intron qin + chr3R 18622830 intron qin + chr3R 18622880 intron qin + chr3R_11_18620001 chr3R_18620001 RAL-555 1663 chr3R 18697517 18697551 chr3R 18697682 18697712 11 165 2.0 3.0 2.5 3.1 195 chr3R 18697517 intergenic not near genes chr3R 18697614 intergenic not near genes chr3R 18697712 intergenic not near genes chr3R_11_18695001 chr3R_18695001 RAL-555 1664 chr3R 18782741 18782770 chr3R 18782835 18782864 6 94 2.0 1.0 1.5 2.4 123 chr3R 18782741 intron CG7720 - chr3R 18782802 intron CG7720 - chr3R 18782864 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-555 1665 chr3R 18792807 18792821 chr3R 18792890 18792904 4 83 3.5 0.0 1.8 1.4 97 chr3R 18792807 intron CG7720 - chr3R 18792856 intron CG7720 - chr3R 18792904 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-555 1666 chr3R 18802129 18802148 chr3R 18802214 18802232 5 85 4.0 2.5 3.2 1.2 103 chr3R 18802129 3` UTR CG18208 - chr3R 18802180 3` UTR CG18208 - chr3R 18802232 3` UTR CG18208 - chr3R_5_18800001 chr3R_18800001 RAL-555 1667 chr3R 18812075 18812109 chr3R 18812153 18812187 11 78 4.0 2.5 3.2 2.6 112 chr3R 18812075 intron CG18208 - chr3R 18812131 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-555 1668 chr3R 18853800 18853821 chr3R 18854049 18854070 4 248 2.0 1.0 1.5 1.6 270 chr3R 18853800 intergenic not near genes chr3R 18853935 intergenic not near genes chr3R 18854070 intergenic not near genes chr3R_4_18850001 chr3R_18850001 RAL-555 1669 chr3R 18860128 18860141 chr3R 18860214 18860227 4 86 1.5 0.0 0.8 2.2 99 chr3R 18860128 intergenic not near genes chr3R 18860178 intergenic not near genes chr3R 18860227 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-555 1670 chr3R 18868612 18868622 chr3R 18868693 18868701 4 80 8.0 5.5 6.8 0.5 89 chr3R 18868612 intergenic not near genes chr3R 18868656 intergenic not near genes chr3R 18868701 intergenic not near genes chr3R_4_18865001 chr3R_18865001 RAL-555 1671 chr3R 18965199 18965236 chr3R 18965392 18965429 8 193 3.0 3.5 3.2 1.9 230 chr3R 18965199 intron,intron CG42613 +,CG43732 + chr3R 18965314 intron,intron CG42613 +,CG43732 + chr3R 18965429 intron,intron CG42613 +,CG43732 + chr3R_8_18965001 chr3R_18965001 RAL-555 1672 chr3R 19014097 19014122 chr3R 19014177 19014200 9 79 4.5 4.5 4.5 1.6 103 chr3R 19014097 intron gukh + chr3R 19014148 intron gukh + chr3R 19014200 intron gukh + chr3R_9_19010001 chr3R_19010001 RAL-555 1673 chr3R 19106821 19106830 chr3R 19106910 19106920 5 90 4.5 0.0 2.2 1.6 99 chr3R 19106821 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106920 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-555 1674 chr3R 19140271 19140296 chr3R 19140717 19140744 5 448 2.0 3.0 2.5 1.4 473 chr3R 19140271 3` UTR Ppcs - chr3R 19140508 3` UTR Ppcs - chr3R 19140744 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-555 1675 chr3R 19276930 19276947 chr3R 19277010 19277027 6 80 1.5 2.0 1.8 2.1 97 chr3R 19276930 intergenic not near genes chr3R 19276978 intergenic not near genes chr3R 19277027 intergenic not near genes chr3R_6_19275001 chr3R_19275001 RAL-555 1676 chr3R 19290544 19290573 chr3R 19290620 19290649 12 76 2.5 3.0 2.8 3.2 105 chr3R 19290544 intergenic not near genes chr3R 19290596 intergenic not near genes chr3R 19290649 intergenic not near genes chr3R_12_19290001 chr3R_19290001 RAL-555 1677 chr3R 19340397 19340429 chr3R 19340474 19340506 8 77 1.0 1.5 1.2 3.6 109 chr3R 19340397 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340506 intergenic not near genes chr3R_8_19340001 chr3R_19340001 RAL-555 1678 chr3R 19344667 19344699 chr3R 19344802 19344834 6 135 1.5 2.0 1.8 2.1 167 chr3R 19344667 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344834 intergenic not near genes chr3R_6_19340001 chr3R_19340001 RAL-555 1679 chr3R 19418408 19418440 chr3R 19418500 19418532 10 92 2.5 1.0 1.8 3.6 124 chr3R 19418408 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418532 intron CG31221 + chr3R_10_19415001 chr3R_19415001 RAL-555 1680 chr3R 19435516 19435543 chr3R 19435792 19435818 12 276 4.0 3.0 3.5 2.7 302 chr3R 19435516 intron CG31221 + chr3R 19435667 intron CG31221 + chr3R 19435818 intron CG31221 + chr3R_12_19435001 chr3R_19435001 RAL-555 1681 chr3R 19466168 19466182 chr3R 19468007 19468022 6 1840 20.5 10.5 15.5 0.4 1854 chr3R 19466168 intron Dys + chr3R 19467095 intron Dys + chr3R 19468022 intron Dys + chr3R_6_19465001 chr3R_19465001 RAL-555 1682 chr3R 19532213 19532247 chr3R 19532289 19532323 6 76 3.5 2.5 3.0 1.5 110 chr3R 19532213 intron Dys + chr3R 19532268 intron Dys + chr3R 19532323 intron Dys + chr3R_6_19530001 chr3R_19530001 RAL-555 1683 chr3R 19550068 19550091 chr3R 19550177 19550199 6 109 3.0 4.0 3.5 1.3 131 chr3R 19550068 intron Dys + chr3R 19550134 intron Dys + chr3R 19550199 intron Dys + chr3R_6_19550001 chr3R_19550001 RAL-555 1684 chr3R 19602756 19602792 chr3R 19602834 19602870 13 78 1.5 0.0 0.8 7.2 114 chr3R 19602756 intergenic CG7333 + chr3R 19602813 intergenic CG7333 + chr3R 19602870 intergenic CG7333 + chr3R_13_19600001 chr3R_19600001 RAL-555 1685 chr3R 19702320 19702351 chr3R 19702401 19702433 6 81 5.0 0.5 2.8 1.6 113 chr3R 19702320 intergenic not near genes chr3R 19702376 intergenic not near genes chr3R 19702433 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-555 1686 chr3R 19716216 19716241 chr3R 19716293 19716318 5 77 0.0 0.0 0.0 5.0 102 chr3R 19716216 intergenic CG34286 - chr3R 19716267 intergenic CG34286 - chr3R 19716318 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-555 1687 chr3R 19824523 19824543 chr3R 19824617 19824636 4 94 1.0 3.5 2.2 1.2 113 chr3R 19824523 intron bnl - chr3R 19824580 intron bnl - chr3R 19824636 intron bnl - chr3R_4_19820001 chr3R_19820001 RAL-555 1688 chr3R 19943880 19943897 chr3R 19943959 19943977 6 80 4.0 0.0 2.0 2.0 97 chr3R 19943880 intron Hs6st - chr3R 19943928 intron Hs6st - chr3R 19943977 intron Hs6st - chr3R_6_19940001 chr3R_19940001 RAL-555 1689 chr3R 19950033 19950061 chr3R 19950111 19950139 12 78 3.5 5.0 4.2 2.3 106 chr3R 19950033 intron Hs6st - chr3R 19950086 intron Hs6st - chr3R 19950139 intron Hs6st - chr3R_12_19950001 chr3R_19950001 RAL-555 1690 chr3R 20008827 20008856 chr3R 20008908 20008937 8 81 3.5 5.5 4.5 1.5 110 chr3R 20008827 intergenic MED25 +,Hs6st - chr3R 20008882 intergenic MED25 +,Hs6st - chr3R 20008937 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 RAL-555 1691 chr3R 20060635 20060649 chr3R 20060713 20060732 4 82 6.0 1.5 3.8 0.8 97 chr3R 20060635 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060732 intergenic not near genes chr3R_4_20060001 chr3R_20060001 RAL-555 1692 chr3R 20077054 20077068 chr3R 20077140 20077154 5 86 3.5 6.0 4.8 0.9 100 chr3R 20077054 intergenic not near genes chr3R 20077104 intergenic not near genes chr3R 20077154 intergenic not near genes chr3R_5_20075001 chr3R_20075001 RAL-555 1693 chr3R 20087134 20087145 chr3R 20087228 20087239 4 94 0.5 0.0 0.2 3.3 105 chr3R 20087134 intergenic not near genes chr3R 20087186 intergenic not near genes chr3R 20087239 intergenic not near genes chr3R_4_20085001 chr3R_20085001 RAL-555 1694 chr3R 20109546 20109570 chr3R 20114752 20114776 copia 9 5206 0.5 4.0 2.2 2.8 5230 chr3R 20109546 intergenic not near genes chr3R 20112161 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_9_20110001 chr3R_20110001 RAL-555 1695 chr3R 20124566 20124600 chr3R 20124653 20124685 12 87 4.0 2.5 3.2 2.9 119 chr3R 20124566 intergenic not near genes chr3R 20124626 intergenic not near genes chr3R 20124685 intergenic not near genes chr3R_12_20120001 chr3R_20120001 RAL-555 1696 chr3R 20137190 20137226 chr3R 20137317 20137353 9 126 2.0 0.5 1.2 4.1 163 chr3R 20137190 intergenic not near genes chr3R 20137272 intergenic not near genes chr3R 20137353 intergenic not near genes chr3R_9_20135001 chr3R_20135001 RAL-555 1697 chr3R 20149595 20149623 chr3R 20151715 20151743 9 2121 18.5 26.0 22.2 0.4 2148 chr3R 20149595 intergenic not near genes chr3R 20150669 intergenic not near genes chr3R 20151743 intergenic not near genes chr3R_9_20150001 chr3R_20150001 RAL-555 1698 chr3R 20156693 20156715 chr3R 20165863 20165884 roo 9 9170 1.5 4.5 3.0 2.2 9191 chr3R 20156693 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165884 intergenic not near genes chr3R_9_20160001 chr3R_20160001 RAL-555 1699 chr3R 20195709 20195723 chr3R 20195784 20195799 6 76 1.0 4.5 2.8 1.6 90 chr3R 20195709 intergenic not near genes chr3R 20195754 intergenic not near genes chr3R 20195799 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-555 1700 chr3R 20205562 20205595 chr3R 20205684 20205717 4 122 0.0 0.5 0.2 3.3 155 chr3R 20205562 intron Nlg4 + chr3R 20205640 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-555 1701 chr3R 20245278 20245303 chr3R 20248888 20248913 F-element 9 3610 3.5 1.5 2.5 2.6 3635 chr3R 20245278 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248913 intergenic not near genes chr3R_9_20245001 chr3R_20245001 RAL-555 1702 chr3R 20252223 20252252 chr3R 20252301 20252330 5 78 0.0 0.5 0.2 4.2 107 chr3R 20252223 intergenic not near genes chr3R 20252276 intergenic cic + chr3R 20252330 intergenic cic + chr3R_5_20250001 chr3R_20250001 RAL-555 1703 chr3R 20266517 20266547 chr3R 20272988 20273018 Burdock 8 6471 4.0 5.5 4.8 1.4 6501 chr3R 20266517 intron cic + chr3R 20269768 intron cic + chr3R 20273018 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-555 1704 chr3R 20282289 20282304 chr3R 20282365 20282380 6 76 0.0 3.0 1.5 2.4 91 chr3R 20282289 intron cic + chr3R 20282334 intron cic + chr3R 20282380 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-555 1705 chr3R 20312855 20312884 chr3R 20312941 20312970 9 86 1.0 1.0 1.0 4.5 115 chr3R 20312855 intron CG42668 + chr3R 20312912 intron CG42668 + chr3R 20312970 intron CG42668 + chr3R_9_20310001 chr3R_20310001 RAL-555 1706 chr3R 20330997 20331030 chr3R 20331483 20331516 roo 10 486 0.5 4.0 2.2 3.1 519 chr3R 20330997 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331516 intergenic not near genes chr3R_10_20330001 chr3R_20330001 RAL-555 1707 chr3R 20406483 20406506 chr3R 20406582 20406605 6 98 1.0 0.0 0.5 4.0 122 chr3R 20406483 intron Gfrl - chr3R 20406544 intron Gfrl - chr3R 20406605 intron Gfrl - chr3R_6_20405001 chr3R_20405001 RAL-555 1708 chr3R 20411221 20411241 chr3R 20411436 20411456 8 215 2.0 3.0 2.5 2.3 235 chr3R 20411221 intron Gfrl - chr3R 20411338 intron Gfrl - chr3R 20411456 intron Gfrl - chr3R_8_20410001 chr3R_20410001 RAL-555 1709 chr3R 20499869 20499898 chr3R 20499959 20499987 7 90 2.0 3.0 2.5 2.0 118 chr3R 20499869 intergenic Dic2 - chr3R 20499928 intergenic Dic2 - chr3R 20499987 intergenic Dic2 - chr3R_7_20495001 chr3R_20495001 RAL-555 1710 chr3R 20513015 20513032 chr3R 20515718 20515735 opus 5 2703 2.5 1.5 2.0 1.7 2720 chr3R 20513015 intergenic not near genes chr3R 20514375 intergenic not near genes chr3R 20515735 intergenic not near genes chr3R_5_20510001 chr3R_20510001 RAL-555 1711 chr3R 20595607 20595639 chr3R 20595817 20595849 8 210 2.5 3.0 2.8 2.1 242 chr3R 20595607 intron bon + chr3R 20595728 intron bon + chr3R 20595849 intron bon + chr3R_8_20595001 chr3R_20595001 RAL-555 1712 chr3R 20686972 20686981 chr3R 20687407 20687416 6 434 4.5 3.0 3.8 1.2 444 chr3R 20686972 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687416 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-555 1713 chr3R 20703483 20703515 chr3R 20703877 20703909 11 394 3.0 3.0 3.0 2.8 426 chr3R 20703483 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703909 intron Oamb - chr3R_11_20700001 chr3R_20700001 RAL-555 1714 chr3R 20707747 20707774 chr3R 20707962 20707989 7 215 1.0 4.5 2.8 1.8 242 chr3R 20707747 intron Oamb - chr3R 20707868 intron Oamb - chr3R 20707989 intron Oamb - chr3R_7_20705001 chr3R_20705001 RAL-555 1715 chr3R 20722863 20722886 chr3R 20722990 20723013 11 127 3.0 3.5 3.2 2.6 150 chr3R 20722863 intergenic not near genes chr3R 20722938 intergenic not near genes chr3R 20723013 intergenic not near genes chr3R_11_20720001 chr3R_20720001 RAL-555 1716 chr3R 20724506 20724519 chr3R 20724595 20724609 4 90 5.5 6.5 6.0 0.6 103 chr3R 20724506 intergenic not near genes chr3R 20724558 intergenic not near genes chr3R 20724609 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-555 1717 chr3R 20730928 20731060 chr3R 20731028 20731148 12 94 0.0 0.0 0.0 12.0 220 chr3R 20730928 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731148 intergenic CG31205 + chr3R_12_20730001 chr3R_20730001 RAL-555 1718 chr3R 20735011 20735040 chr3R 20735097 20735126 8 86 2.5 3.0 2.8 2.1 115 chr3R 20735011 intergenic not near genes chr3R 20735068 intergenic not near genes chr3R 20735126 intergenic cdc2c + chr3R_8_20735001 chr3R_20735001 RAL-555 1719 chr3R 20787442 20787457 chr3R 20787533 20787548 8 91 3.0 1.5 2.2 2.5 106 chr3R 20787442 intron Syp + chr3R 20787495 intron Syp + chr3R 20787548 intron Syp + chr3R_8_20785001 chr3R_20785001 RAL-555 1720 chr3R 20794875 20794909 chr3R 20794960 20794994 5 85 1.0 4.0 2.5 1.4 119 chr3R 20794875 intron Syp + chr3R 20794934 intron Syp + chr3R 20794994 intron Syp + chr3R_5_20790001 chr3R_20790001 RAL-555 1721 chr3R 20824822 20824847 chr3R 20824898 20824923 7 76 3.5 4.0 3.8 1.5 101 chr3R 20824822 3` UTR AdSS - chr3R 20824872 3` UTR AdSS - chr3R 20824923 3` UTR AdSS - chr3R_7_20820001 chr3R_20820001 RAL-555 1722 chr3R 20850086 20850107 chr3R 20850171 20850192 5 84 0.5 0.0 0.2 4.2 106 chr3R 20850086 intergenic RpS30 + chr3R 20850139 intergenic RpS30 + chr3R 20850192 intergenic RpS30 + chr3R_5_20850001 chr3R_20850001 RAL-555 1723 chr3R 20854489 20854516 chr3R 20859278 20859306 Doc 4 4790 3.5 3.0 3.2 1.0 4817 chr3R 20854489 intron Ir93a - chr3R 20856898 intron Ir93a - chr3R 20859306 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-555 1724 chr3R 20874522 20874550 chr3R 20874607 20874632 8 85 0.5 3.5 2.0 2.7 110 chr3R 20874522 3` UTR TotB + chr3R 20874577 intergenic TotB + chr3R 20874632 intergenic TotB + chr3R_8_20870001 chr3R_20870001 RAL-555 1725 chr3R 20901346 20901374 chr3R 20901432 20901460 8 86 2.5 5.0 3.8 1.7 114 chr3R 20901346 intergenic not near genes chr3R 20901403 intergenic not near genes chr3R 20901460 intergenic CG5621 + chr3R_8_20900001 chr3R_20900001 RAL-555 1726 chr3R 20966128 20966155 chr3R 20966211 20966238 9 83 0.0 3.0 1.5 3.6 110 chr3R 20966128 intron Atpalpha + chr3R 20966183 intron Atpalpha + chr3R 20966238 intron Atpalpha + chr3R_9_20965001 chr3R_20965001 RAL-555 1727 chr3R 21014006 21014045 chr3R 21014084 21014123 16 78 2.5 1.5 2.0 5.3 117 chr3R 21014006 3` UTR Calx + chr3R 21014064 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_16_21010001 chr3R_21010001 RAL-555 1728 chr3R 21074809 21074831 chr3R 21075030 21075052 8 221 1.5 2.5 2.0 2.7 243 chr3R 21074809 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075052 intron dmrt93B + chr3R_8_21070001 chr3R_21070001 RAL-555 1729 chr3R 21108038 21108065 chr3R 21108299 21108326 4 261 1.0 1.0 1.0 2.0 288 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108182 intergenic Sec15 -,rtet + chr3R 21108326 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-555 1730 chr3R 21239811 21239949 chr3R 21239905 21240025 5 83 0.0 0.0 0.0 5.0 214 chr3R 21239811 intergenic not near genes chr3R 21239918 intergenic not near genes chr3R 21240025 intergenic not near genes chr3R_5_21235001 chr3R_21235001 RAL-555 1731 chr3R 21322982 21322999 chr3R 21323060 21323078 6 79 2.0 0.0 1.0 3.0 96 chr3R 21322982 intron CG16791 - chr3R 21323030 intron CG16791 - chr3R 21323078 intron CG16791 - chr3R_6_21320001 chr3R_21320001 RAL-555 1732 chr3R 21330798 21330824 chr3R 21330888 21330914 7 89 5.5 4.5 5.0 1.2 116 chr3R 21330798 intron CG16791 - chr3R 21330856 intron CG16791 - chr3R 21330914 intron CG16791 - chr3R_7_21330001 chr3R_21330001 RAL-555 1733 chr3R 21383271 21383284 chr3R 21383351 21383364 4 80 0.0 2.0 1.0 2.0 93 chr3R 21383271 intergenic not near genes chr3R 21383318 intergenic not near genes chr3R 21383364 intergenic not near genes chr3R_4_21380001 chr3R_21380001 RAL-555 1734 chr3R 21472012 21472030 chr3R 21472092 21472111 7 80 4.0 2.5 3.2 1.7 99 chr3R 21472012 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472111 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-555 1735 chr3R 21494682 21494716 chr3R 21494761 21494796 9 80 1.5 1.5 1.5 3.6 114 chr3R 21494682 intergenic not near genes chr3R 21494739 intergenic not near genes chr3R 21494796 intergenic not near genes chr3R_9_21490001 chr3R_21490001 RAL-555 1736 chr3R 21505225 21505254 chr3R 21505304 21505336 10 81 0.5 2.0 1.2 4.5 111 chr3R 21505225 intron C15 + chr3R 21505280 intron C15 + chr3R 21505336 intron C15 + chr3R_10_21505001 chr3R_21505001 RAL-555 1737 chr3R 21506871 21506911 chr3R 21506957 21506990 4 82 0.0 3.0 1.5 1.6 119 chr3R 21506871 intron C15 + chr3R 21506930 intron C15 + chr3R 21506990 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-555 1738 chr3R 21518253 21518266 chr3R 21518337 21518350 6 84 0.0 4.5 2.2 1.9 97 chr3R 21518253 intergenic not near genes chr3R 21518302 intergenic not near genes chr3R 21518350 intergenic not near genes chr3R_6_21515001 chr3R_21515001 RAL-555 1739 chr3R 21519992 21520131 chr3R 21520093 21520225 7 98 1.5 1.5 1.5 2.8 233 chr3R 21519992 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520225 intergenic not near genes chr3R_7_21520001 chr3R_21520001 RAL-555 1740 chr3R 21613452 21613476 chr3R 21613533 21613557 12 81 3.0 1.5 2.2 3.8 105 chr3R 21613452 intron InR - chr3R 21613504 intron InR - chr3R 21613557 intron InR - chr3R_12_21610001 chr3R_21610001 RAL-555 1741 chr3R 21641254 21641289 chr3R 21641330 21641364 6 76 1.5 0.5 1.0 3.0 110 chr3R 21641254 intron E2f - chr3R 21641309 intron E2f - chr3R 21641364 intron E2f - chr3R_6_21640001 chr3R_21640001 RAL-555 1742 chr3R 21652540 21652571 chr3R 21652620 21652651 8 80 1.5 0.5 1.0 4.0 111 chr3R 21652540 intron E2f - chr3R 21652596 intron E2f - chr3R 21652651 intron E2f - chr3R_8_21650001 chr3R_21650001 RAL-555 1743 chr3R 21725672 21725678 chr3R 21725808 21725814 4 136 0.0 3.5 1.8 1.4 142 chr3R 21725672 intergenic not near genes chr3R 21725743 intergenic not near genes chr3R 21725814 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-555 1744 chr3R 21761138 21761154 chr3R 21768529 21768546 mdg1 9 7392 3.0 2.5 2.8 2.4 7408 chr3R 21761138 exon CG42335 + chr3R 21764842 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-555 1745 chr3R 21790963 21790990 chr3R 21791047 21791074 10 85 2.5 5.5 4.0 2.0 111 chr3R 21790963 intron CASK - chr3R 21791018 intron CASK - chr3R 21791074 intron CASK - chr3R_10_21790001 chr3R_21790001 RAL-555 1746 chr3R 21794466 21794486 chr3R 21794556 21794576 5 90 1.5 4.0 2.8 1.3 110 chr3R 21794466 intron CASK - chr3R 21794521 intron CASK - chr3R 21794576 intron CASK - chr3R_5_21790001 chr3R_21790001 RAL-555 1747 chr3R 8339242 8339246 chr3R 21907534 21907534 11 13568288 16.0 27.0 21.5 0.5 13568292 chr3R 8339242 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-555 1748 chr3R 21907534 21907534 chr3R 28831799 28831804 41 6924268 22.0 17.5 19.8 2.0 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_41_25365001 chr3R_25365001 RAL-555 1749 chr3R 8339241 8339247 chr3R 21907535 21907535 15 13568289 16.0 26.5 21.2 0.7 13568294 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-555 1750 chr3R 9620955 9620959 chr3R 21907535 21907535 10 12286579 15.5 26.5 21.0 0.5 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_10_15760001 chr3R_15760001 RAL-555 1751 chr3R 21907535 21907535 chr3R 28831801 28831802 105 6924266 22.0 17.5 19.8 5.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_105_25365001 chr3R_25365001 RAL-555 1752 chr3R 9620956 9620956 chr3R 21907536 21907536 4 12286580 16.0 26.5 21.2 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-555 1753 chr3R 21907536 21907536 chr3R 28831801 28831803 69 6924266 21.0 17.5 19.2 3.4 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_69_25365001 chr3R_25365001 RAL-555 1754 chr3R 21952136 21952160 chr3R 21952219 21952245 7 85 4.0 4.5 4.2 1.3 109 chr3R 21952136 intron Eip93F + chr3R 21952190 intron Eip93F + chr3R 21952245 intron Eip93F + chr3R_7_21950001 chr3R_21950001 RAL-555 1755 chr3R 21958607 21958632 chr3R 21958697 21958722 6 90 1.5 3.0 2.2 1.9 115 chr3R 21958607 intron Eip93F + chr3R 21958664 intron Eip93F + chr3R 21958722 intron Eip93F + chr3R_6_21955001 chr3R_21955001 RAL-555 1756 chr3R 22116412 22116426 chr3R 22116779 22116789 4 366 2.5 3.0 2.8 1.1 377 chr3R 22116412 exon Ir94b - chr3R 22116600 exon Ir94b - chr3R 22116789 exon Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-555 1757 chr3R 22117415 22117447 chr3R 22117491 22117523 12 76 3.5 4.0 3.8 2.5 108 chr3R 22117415 intergenic Ir94b -,Ir94c - chr3R 22117469 intergenic Ir94c -,Ir94b - chr3R 22117523 intergenic Ir94c -,Ir94b - chr3R_12_22115001 chr3R_22115001 RAL-555 1758 chr3R 22234694 22234709 chr3R 22236013 22236028 pogo 7 1319 1.0 4.5 2.8 1.8 1334 chr3R 22234694 intron SKIP + chr3R 22235361 intron SKIP + chr3R 22236028 intron SKIP + chr3R_7_22235001 chr3R_22235001 RAL-555 1759 chr3R 22239489 22239520 chr3R 22248549 22248580 roo 9 9059 4.5 1.5 3.0 2.2 9091 chr3R 22239489 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248580 intron SKIP + chr3R_9_22240001 chr3R_22240001 RAL-555 1760 chr3R 22292485 22292503 chr3R 22292564 22292583 5 80 2.5 2.0 2.2 1.6 98 chr3R 22292485 intron SKIP + chr3R 22292534 intron SKIP + chr3R 22292583 intron SKIP + chr3R_5_22290001 chr3R_22290001 RAL-555 1761 chr3R 22428580 22428609 chr3R 22428655 22428685 11 76 2.5 3.0 2.8 2.9 105 chr3R 22428580 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_11_22425001 chr3R_22425001 RAL-555 1762 chr3R 22450548 22450577 chr3R 22453185 22453217 NOF 10 2639 5.5 7.0 6.2 1.4 2669 chr3R 22450548 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-555 1763 chr3R 22492389 22492415 chr3R 22492470 22492496 9 81 3.0 3.5 3.2 2.1 107 chr3R 22492389 intergenic CG7045 + chr3R 22492442 intergenic CG7045 + chr3R 22492496 intergenic CG7045 +,CG7046 + chr3R_9_22490001 chr3R_22490001 RAL-555 1764 chr3R 22538444 22538466 chr3R 22538529 22538551 9 85 2.5 2.0 2.2 2.8 107 chr3R 22538444 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538551 intron CG5326 - chr3R_9_22535001 chr3R_22535001 RAL-555 1765 chr3R 22646929 22646936 chr3R 22647017 22647024 4 88 4.5 0.0 2.2 1.2 95 chr3R 22646929 intron wake + chr3R 22646976 intron wake + chr3R 22647024 intron wake + chr3R_4_22645001 chr3R_22645001 RAL-555 1766 chr3R 22769090 22769125 chr3R 22769167 22769202 14 76 2.0 4.5 3.2 3.3 112 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_14_22765001 chr3R_22765001 RAL-555 1767 chr3R 22797760 22797935 chr3R 22797846 22798031 18 90 0.0 0.0 0.0 18.0 271 chr3R 22797760 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798031 intergenic not near genes chr3R_18_22795001 chr3R_22795001 RAL-555 1768 chr3R 22860153 22860174 chr3R 22860245 22860266 7 92 5.0 2.0 3.5 1.6 113 chr3R 22860153 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-555 1769 chr3R 22881204 22881220 chr3R 22884910 22884925 Doc 5 3705 1.5 2.0 1.8 1.8 3721 chr3R 22881204 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-555 1770 chr3R 22888199 22888203 chr3R 22888471 22888475 4 272 8.5 0.0 4.2 0.8 276 chr3R 22888199 intergenic not near genes chr3R 22888337 intergenic not near genes chr3R 22888475 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-555 1771 chr3R 22919156 22919188 chr3R 22919253 22919283 13 96 1.0 3.0 2.0 4.3 127 chr3R 22919156 intron klg + chr3R 22919220 intron klg + chr3R 22919283 intron klg + chr3R_13_22915001 chr3R_22915001 RAL-555 1772 chr3R 22927870 22927904 chr3R 22927965 22927999 14 94 3.0 2.5 2.8 3.7 129 chr3R 22927870 intron klg + chr3R 22927934 intron klg + chr3R 22927999 intron klg + chr3R_14_22925001 chr3R_22925001 RAL-555 1773 chr3R 22990350 22990379 chr3R 22990605 22990634 10 255 2.5 2.5 2.5 2.9 284 chr3R 22990350 intron,exon Nha2 -,Or94b + chr3R 22990492 intron,intron Nha2 -,Or94b + chr3R 22990634 intron Nha2 - chr3R_10_22990001 chr3R_22990001 RAL-555 1774 chr3R 23016204 23016228 chr3R 23016281 23016302 9 76 1.5 3.0 2.2 2.8 98 chr3R 23016204 intergenic not near genes chr3R 23016253 intergenic not near genes chr3R 23016302 intergenic not near genes chr3R_9_23015001 chr3R_23015001 RAL-555 1775 chr3R 23090404 23090430 chr3R 23090487 23090513 6 83 3.0 3.0 3.0 1.5 109 chr3R 23090404 intron CG13830 - chr3R 23090458 intron CG13830 - chr3R 23090513 intron CG13830 - chr3R_6_23090001 chr3R_23090001 RAL-555 1776 chr3R 23182494 23182512 chr3R 23182611 23182629 7 117 3.0 0.0 1.5 2.8 135 chr3R 23182494 intron Irk1 + chr3R 23182562 intron Irk1 + chr3R 23182629 intron Irk1 + chr3R_7_23180001 chr3R_23180001 RAL-555 1777 chr3R 23186197 23186207 chr3R 23186284 23186294 5 87 3.0 1.0 2.0 1.7 97 chr3R 23186197 intergenic cnc - chr3R 23186246 intergenic cnc - chr3R 23186294 intergenic cnc - chr3R_5_23185001 chr3R_23185001 RAL-555 1778 chr3R 23245998 23246026 chr3R 23246080 23246108 4 82 1.0 2.5 1.8 1.4 110 chr3R 23245998 intron CG4467 - chr3R 23246053 intron CG4467 - chr3R 23246108 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-555 1779 chr3R 23248199 23248231 chr3R 23248284 23248316 12 84 5.0 7.5 6.2 1.7 117 chr3R 23248199 intron CG4467 - chr3R 23248258 intron CG4467 - chr3R 23248316 intron CG4467 - chr3R_12_23245001 chr3R_23245001 RAL-555 1780 chr3R 23291248 23291276 chr3R 23291334 23291362 9 86 4.5 0.5 2.5 2.6 114 chr3R 23291248 3` UTR pnt - chr3R 23291305 3` UTR pnt - chr3R 23291362 3` UTR pnt - chr3R_9_23290001 chr3R_23290001 RAL-555 1781 chr3R 23311677 23311704 chr3R 23311771 23311798 5 94 4.0 3.5 3.8 1.0 121 chr3R 23311677 intron pnt - chr3R 23311738 intron pnt - chr3R 23311798 intron pnt - chr3R_5_23310001 chr3R_23310001 RAL-555 1782 chr3R 23338903 23338917 chr3R 23338978 23338993 7 75 2.0 2.5 2.2 2.2 90 chr3R 23338903 intron pnt - chr3R 23338948 intron pnt - chr3R 23338993 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-555 1783 chr3R 23475944 23475968 chr3R 23476104 23476126 7 159 2.0 3.0 2.5 2.0 182 chr3R 23475944 intergenic not near genes chr3R 23476035 intergenic not near genes chr3R 23476126 intergenic not near genes chr3R_7_23475001 chr3R_23475001 RAL-555 1784 chr3R 23558398 23558429 chr3R 23560179 23560210 Bari1 13 1781 3.5 3.5 3.5 2.9 1812 chr3R 23558398 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_13_23555001 chr3R_23555001 RAL-555 1785 chr3R 23572752 23572781 chr3R 23572872 23572901 7 120 0.0 0.5 0.2 5.8 149 chr3R 23572752 intron beat-IV + chr3R 23572826 intron beat-IV + chr3R 23572901 intron beat-IV + chr3R_7_23570001 chr3R_23570001 RAL-555 1786 chr3R 23684696 23684724 chr3R 23685182 23685207 roo 10 485 3.5 4.5 4.0 2.0 511 chr3R 23684696 exon CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685207 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-555 1787 chr3R 23688472 23688501 chr3R 23688562 23688590 13 90 3.5 5.5 4.5 2.4 118 chr3R 23688472 intergenic SPE + chr3R 23688531 intergenic SPE +,CG10254 - chr3R 23688590 intergenic CG10254 -,SPE + chr3R_13_23685001 chr3R_23685001 RAL-555 1788 chr3R 23714713 23714745 chr3R 23714807 23714838 14 94 1.5 3.0 2.2 4.4 125 chr3R 23714713 intron nau - chr3R 23714776 intron nau - chr3R 23714838 intron nau - chr3R_14_23710001 chr3R_23710001 RAL-555 1789 chr3R 23820648 23820665 chr3R 23820726 23820749 5 82 3.0 4.0 3.5 1.1 101 chr3R 23820648 5` UTR CG34355 + chr3R 23820698 5` UTR CG34355 + chr3R 23820749 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-555 1790 chr3R 23835403 23835429 chr3R 23844553 23844579 roo 5 9150 2.5 1.5 2.0 1.7 9176 chr3R 23835403 intron CG34355 + chr3R 23839991 intron CG34355 + chr3R 23844579 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-555 1791 chr3R 23944913 23944936 chr3R 23944998 23945021 11 85 2.0 7.5 4.8 1.9 108 chr3R 23944913 intron CG12268 - chr3R 23944967 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-555 1792 chr3R 24025579 24025591 chr3R 24025656 24025670 7 78 2.0 1.5 1.8 2.5 91 chr3R 24025579 intron KrT95D - chr3R 24025624 intron KrT95D - chr3R 24025670 intron KrT95D - chr3R_7_24025001 chr3R_24025001 RAL-555 1793 chr3R 24072086 24072117 chr3R 24072523 24072555 jockey 10 437 3.0 4.5 3.8 2.1 469 chr3R 24072086 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072555 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-555 1794 chr3R 24076919 24076947 chr3R 24078385 24078414 hobo 8 1467 3.0 2.0 2.5 2.3 1495 chr3R 24076919 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-555 1795 chr3R 24080607 24080639 chr3R 24080706 24080738 6 99 0.5 1.5 1.0 3.0 131 chr3R 24080607 intron 4EHP - chr3R 24080672 intron 4EHP - chr3R 24080738 intron 4EHP - chr3R_6_24080001 chr3R_24080001 RAL-555 1796 chr3R 24100476 24100617 chr3R 24100571 24100841 8 208 2.0 2.0 2.0 2.7 365 chr3R 24100476 intron 4EHP - chr3R 24100658 intron 4EHP - chr3R 24100841 intron 4EHP - chr3R_8_24100001 chr3R_24100001 RAL-555 1797 chr3R 24207219 24207247 chr3R 24212295 24212323 flea 10 5076 2.5 8.5 5.5 1.5 5104 chr3R 24207219 intron twin - chr3R 24209771 intron twin - chr3R 24212323 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-555 1798 chr3R 21907534 21907535 chr3R 24389465 24389465 7 2481930 22.0 14.0 18.0 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_7_23145001 chr3R_23145001 RAL-555 1799 chr3R 24431604 24431627 chr3R 24431683 24431706 9 79 2.0 2.0 2.0 3.0 102 chr3R 24431604 intron nAChRalpha1 - chr3R 24431655 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-555 1800 chr3R 24433482 24433497 chr3R 24433561 24433576 8 79 4.5 3.5 4.0 1.6 94 chr3R 24433482 intron nAChRalpha1 - chr3R 24433529 intron nAChRalpha1 - chr3R 24433576 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-555 1801 chr3R 24493274 24493310 chr3R 24493503 24493539 BS 10 229 3.0 3.5 3.2 2.4 265 chr3R 24493274 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_10_24490001 chr3R_24490001 RAL-555 1802 chr3R 24624377 24624396 chr3R 24624466 24624485 5 89 2.0 1.5 1.8 1.8 108 chr3R 24624377 intron Syx18 - chr3R 24624431 intron Syx18 - chr3R 24624485 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-555 1803 chr3R 24670160 24670189 chr3R 24670244 24670273 12 84 5.0 0.5 2.8 3.2 113 chr3R 24670160 intron slo + chr3R 24670216 intron slo + chr3R 24670273 intron slo + chr3R_12_24670001 chr3R_24670001 RAL-555 1804 chr3R 24671218 24671238 chr3R 24671295 24671314 9 77 5.5 2.0 3.8 1.9 96 chr3R 24671218 intron slo + chr3R 24671266 intron slo + chr3R 24671314 intron slo + chr3R_9_24670001 chr3R_24670001 RAL-555 1805 chr3R 24728337 24728351 chr3R 24728510 24728524 6 173 6.0 4.0 5.0 1.0 187 chr3R 24728337 intron tok + chr3R 24728430 intron tok + chr3R 24728524 intron tok + chr3R_6_24725001 chr3R_24725001 RAL-555 1806 chr3R 24730091 24730120 chr3R 24732469 24732498 Doc 9 2378 3.0 0.5 1.8 3.2 2407 chr3R 24730091 intron tok + chr3R 24731294 intron tok + chr3R 24732498 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-555 1807 chr3R 24893472 24893491 chr3R 24893552 24893571 6 80 1.0 1.5 1.2 2.7 99 chr3R 24893472 intron CG31121 - chr3R 24893522 intron CG31121 - chr3R 24893571 intron CG31121 - chr3R_6_24890001 chr3R_24890001 RAL-555 1808 chr3R 24912482 24912514 chr3R 24912564 24912596 7 82 1.5 2.0 1.8 2.5 114 chr3R 24912482 intergenic not near genes chr3R 24912539 intergenic CR44267 + chr3R 24912596 intergenic CR44267 + chr3R_7_24910001 chr3R_24910001 RAL-555 1809 chr3R 24927134 24927160 chr3R 24931925 24931951 Doc 7 4791 3.5 3.0 3.2 1.7 4817 chr3R 24927134 intergenic Trf4-2 + chr3R 24929542 intergenic not near genes chr3R 24931951 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-555 1810 chr3R 25004902 25004918 chr3R 25004985 25005001 5 83 0.0 3.0 1.5 2.0 99 chr3R 25004902 intron tnc + chr3R 25004952 intron tnc + chr3R 25005001 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-555 1811 chr3R 25136403 25136434 chr3R 25136483 25136514 12 80 2.0 2.0 2.0 4.0 111 chr3R 25136403 3` UTR Bili + chr3R 25136458 3` UTR Bili + chr3R 25136514 3` UTR Bili + chr3R_12_25135001 chr3R_25135001 RAL-555 1812 chr3R 25209599 25209628 chr3R 25209679 25209710 7 82 2.0 2.5 2.2 2.2 111 chr3R 25209599 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209710 intron CG13654 + chr3R_7_25205001 chr3R_25205001 RAL-555 1813 chr3R 25235816 25235838 chr3R 25235896 25235918 6 80 3.0 2.5 2.8 1.6 102 chr3R 25235816 intergenic CG10420 - chr3R 25235867 intergenic CG10420 - chr3R 25235918 intergenic CG10420 - chr3R_6_25235001 chr3R_25235001 RAL-555 1814 chr3R 25302133 25302155 chr3R 25302349 25302371 5 216 18.5 13.0 15.8 0.3 238 chr3R 25302133 exon CG13659 + chr3R 25302252 exon CG13659 + chr3R 25302371 intergenic CG13659 +,CG31370 + chr3R_5_25300001 chr3R_25300001 RAL-555 1815 chr3R 25320387 25320397 chr3R 25320473 25320483 4 86 2.0 0.0 1.0 2.0 96 chr3R 25320387 intergenic CG10560 - chr3R 25320435 intergenic CG10560 - chr3R 25320483 intergenic CG10560 - chr3R_4_25320001 chr3R_25320001 RAL-555 1816 chr3R 25368473 25368497 chr3R 25368591 25368615 9 118 3.5 0.0 1.8 3.2 142 chr3R 25368473 intron Fur1 - chr3R 25368544 intron Fur1 - chr3R 25368615 intron Fur1 - chr3R_9_25365001 chr3R_25365001 RAL-555 1817 chr3R 25377088 25377125 chr3R 25377354 25377391 17 265 2.5 4.0 3.2 4.0 303 chr3R 25377088 intron Fur1 - chr3R 25377240 intron Fur1 - chr3R 25377391 intron Fur1 - chr3R_17_25375001 chr3R_25375001 RAL-555 1818 chr3R 25422065 25422096 chr3R 25422146 25422176 7 81 2.0 0.0 1.0 3.5 111 chr3R 25422065 intron Fur1 - chr3R 25422120 intron Fur1 - chr3R 25422176 intron Fur1 - chr3R_7_25420001 chr3R_25420001 RAL-555 1819 chr3R 25521583 25521593 chr3R 25521668 25521678 5 85 7.0 0.0 3.5 1.1 95 chr3R 25521583 intron msi + chr3R 25521630 intron msi + chr3R 25521678 intron msi + chr3R_5_25520001 chr3R_25520001 RAL-555 1820 chr3R 25526253 25526273 chr3R 25526330 25526350 5 77 2.5 0.5 1.5 2.0 97 chr3R 25526253 intron msi + chr3R 25526302 intron msi + chr3R 25526350 intron msi + chr3R_5_25525001 chr3R_25525001 RAL-555 1821 chr3R 25528038 25528044 chr3R 25528141 25528147 4 103 5.5 2.5 4.0 0.8 109 chr3R 25528038 intron msi + chr3R 25528092 intron msi + chr3R 25528147 intron msi + chr3R_4_25525001 chr3R_25525001 RAL-555 1822 chr3R 25716377 25716410 chr3R 25716455 25716488 9 78 1.5 4.0 2.8 2.4 111 chr3R 25716377 intron LpR2 - chr3R 25716432 intron LpR2 - chr3R 25716488 intron LpR2 - chr3R_9_25715001 chr3R_25715001 RAL-555 1823 chr3R 25725826 25725841 chr3R 25734986 25735001 roo 4 9160 4.5 4.0 4.2 0.8 9175 chr3R 25725826 intron LpR2 - chr3R 25730414 intron LpR2 - chr3R 25735001 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-555 1824 chr3R 25765876 25765911 chr3R 25765955 25765987 9 79 4.5 2.5 3.5 2.0 111 chr3R 25765876 intergenic not near genes chr3R 25765932 intergenic not near genes chr3R 25765987 intergenic not near genes chr3R_9_25765001 chr3R_25765001 RAL-555 1825 chr3R 25788517 25788552 chr3R 25788607 25788642 11 89 2.5 2.0 2.2 3.4 125 chr3R 25788517 exon CG31380 - chr3R 25788580 exon CG31380 - chr3R 25788642 exon CG31380 - chr3R_11_25785001 chr3R_25785001 RAL-555 1826 chr3R 25796378 25796397 chr3R 25796457 25796476 4 79 4.5 0.0 2.2 1.2 98 chr3R 25796378 intergenic CR43847 - chr3R 25796427 intergenic CR43847 - chr3R 25796476 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-555 1827 chr3R 25801276 25801293 chr3R 25802260 25802277 9 984 1.0 5.5 3.2 2.1 1001 chr3R 25801276 intergenic not near genes chr3R 25801776 intergenic not near genes chr3R 25802277 intergenic not near genes chr3R_9_25800001 chr3R_25800001 RAL-555 1828 chr3R 25832698 25832716 chr3R 25841880 25841898 roo 10 9182 3.0 5.5 4.2 1.9 9200 chr3R 25832698 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841898 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-555 1829 chr3R 25843638 25843667 chr3R 25843768 25843798 9 130 1.5 4.5 3.0 2.2 160 chr3R 25843638 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843798 intergenic CR45653 + chr3R_9_25840001 chr3R_25840001 RAL-555 1830 chr3R 25900881 25900913 chr3R 25903598 25903630 15 2717 33.5 22.0 27.8 0.5 2749 chr3R 25900881 exon CG31091 + chr3R 25902256 intergenic CG31091 +,CG31089 + chr3R 25903630 exon,intron CG31089 +,CR43259 - chr3R_15_25900001 chr3R_25900001 RAL-555 1831 chr3R 25920853 25920870 chr3R 25920934 25920951 4 81 3.5 0.0 1.8 1.4 98 chr3R 25920853 3` UTR CG42235 + chr3R 25920902 3` UTR CG42235 + chr3R 25920951 3` UTR CG42235 + chr3R_4_25920001 chr3R_25920001 RAL-555 1832 chr3R 25927503 25927539 chr3R 25927585 25927621 9 82 2.5 0.0 1.2 4.1 118 chr3R 25927503 intron CCAP-R - chr3R 25927562 intron CCAP-R - chr3R 25927621 intron CCAP-R - chr3R_9_25925001 chr3R_25925001 RAL-555 1833 chr3R 26088591 26088609 chr3R 26088687 26088706 6 97 2.5 1.5 2.0 2.0 115 chr3R 26088591 intron dys - chr3R 26088648 intron dys - chr3R 26088706 intron dys - chr3R_6_26085001 chr3R_26085001 RAL-555 1834 chr3R 26093846 26093875 chr3R 26093924 26093953 9 78 2.0 3.0 2.5 2.6 107 chr3R 26093846 intron dys - chr3R 26093900 intron dys - chr3R 26093953 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-555 1835 chr3R 26104064 26104095 chr3R 26105143 26105174 5 1079 12.5 22.0 17.2 0.3 1110 chr3R 26104064 intergenic not near genes chr3R 26104619 intergenic not near genes chr3R 26105174 intergenic not near genes chr3R_5_26100001 chr3R_26100001 RAL-555 1836 chr3R 26108827 26108840 chr3R 26117410 26117423 Tirant 4 8583 4.5 0.0 2.2 1.2 8596 chr3R 26108827 5` UTR CG31324 + chr3R 26113125 intron CG31324 + chr3R 26117423 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-555 1837 chr3R 26121952 26121980 chr3R 26122049 26122077 13 96 0.0 3.5 1.8 4.6 125 chr3R 26121952 intron CG31324 + chr3R 26122014 intron CG31324 + chr3R 26122077 intron CG31324 + chr3R_13_26120001 chr3R_26120001 RAL-555 1838 chr3R 26122467 26122471 chr3R 26122543 26122545 4 75 4.0 5.5 4.8 0.7 78 chr3R 26122467 intron CG31324 + chr3R 26122506 intron CG31324 + chr3R 26122545 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-555 1839 chr3R 26126271 26126288 chr3R 26126375 26126392 9 105 4.5 2.5 3.5 2.0 121 chr3R 26126271 intron CG31324 + chr3R 26126332 intron CG31324 + chr3R 26126392 intron CG31324 + chr3R_9_26125001 chr3R_26125001 RAL-555 1840 chr3R 26235488 26235521 chr3R 26235570 26235603 11 81 1.0 4.5 2.8 2.9 115 chr3R 26235488 5` UTR CR42745 + chr3R 26235546 5` UTR CR42745 + chr3R 26235603 5` UTR CR42745 + chr3R_11_26235001 chr3R_26235001 RAL-555 1841 chr3R 17227312 17227315 chr3R 26242104 26242107 4 9014792 20.0 11.5 15.8 0.2 9014795 chr3R 17227312 intergenic not near genes chr3R 21734710 intergenic not near genes chr3R 26242107 intron CR42745 + chr3R_4_21730001 chr3R_21730001 RAL-555 1842 chr3R 26256009 26256041 chr3R 26256090 26256122 8 81 3.5 1.0 2.2 2.5 113 chr3R 26256009 intron Ald - chr3R 26256066 intron Ald - chr3R 26256122 intron Ald - chr3R_8_26255001 chr3R_26255001 RAL-555 1843 chr3R 26294715 26294748 chr3R 26294793 26294826 11 78 3.0 2.5 2.8 2.9 111 chr3R 26294715 intergenic not near genes chr3R 26294770 intergenic not near genes chr3R 26294826 intergenic not near genes chr3R_11_26290001 chr3R_26290001 RAL-555 1844 chr3R 26320352 26320371 chr3R 26320538 26320557 8 187 1.5 1.5 1.5 3.2 205 chr3R 26320352 intron CG33970 + chr3R 26320454 intron CG33970 + chr3R 26320557 intron CG33970 + chr3R_8_26320001 chr3R_26320001 RAL-555 1845 chr3R 26343024 26343045 chr3R 26343539 26343561 8 516 0.5 0.5 0.5 5.3 537 chr3R 26343024 intron CG33970 + chr3R 26343292 intron CG33970 + chr3R 26343561 intron CG33970 + chr3R_8_26340001 chr3R_26340001 RAL-555 1846 chr3R 26376323 26376357 chr3R 26385482 26385517 roo 11 9160 6.0 0.5 3.2 2.6 9194 chr3R 26376323 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_11_26380001 chr3R_26380001 RAL-555 1847 chr3R 26425874 26425906 chr3R 26425958 26425990 8 84 3.0 4.0 3.5 1.8 116 chr3R 26425874 intron CR31084 + chr3R 26425932 intron CR31084 + chr3R 26425990 intron CR31084 + chr3R_8_26425001 chr3R_26425001 RAL-555 1848 chr3R 26510503 26510528 chr3R 26519563 26519589 roo 5 9061 4.0 4.0 4.0 1.0 9086 chr3R 26510503 intron plum - chr3R 26515046 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-555 1849 chr3R 26553208 26553237 chr3R 26553712 26553740 9 503 2.0 1.0 1.5 3.6 532 chr3R 26553208 intron scrib + chr3R 26553474 intron scrib + chr3R 26553740 intron scrib + chr3R_9_26550001 chr3R_26550001 RAL-555 1850 chr3R 26558327 26558361 chr3R 26565639 26565672 Stalker4 13 7312 3.5 3.0 3.2 3.1 7345 chr3R 26558327 intron scrib + chr3R 26562000 intron scrib + chr3R 26565672 intron scrib + chr3R_13_26560001 chr3R_26560001 RAL-555 1851 chr3R 26607747 26607770 chr3R 26607822 26607846 8 76 1.5 3.5 2.5 2.3 99 chr3R 26607747 5` UTR CR44951 + chr3R 26607796 5` UTR CR44951 + chr3R 26607846 5` UTR CR44951 + chr3R_8_26605001 chr3R_26605001 RAL-555 1852 chr3R 26641644 26641654 chr3R 26641730 26641741 4 86 5.5 3.5 4.5 0.7 97 chr3R 26641644 intergenic not near genes chr3R 26641692 intergenic not near genes chr3R 26641741 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-555 1853 chr3R 26642732 26642759 chr3R 26643125 26643146 jockey 8 393 5.0 4.5 4.8 1.4 414 chr3R 26642732 intergenic not near genes chr3R 26642939 intergenic not near genes chr3R 26643146 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-555 1854 chr3R 21907534 21907535 chr3R 26659336 26659337 4 4751802 22.0 12.5 17.2 0.2 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-555 1855 chr3R 26660649 26660674 chr3R 26660731 26660758 13 84 1.5 5.5 3.5 2.9 109 chr3R 26660649 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660758 intron beat-VII - chr3R_13_26660001 chr3R_26660001 RAL-555 1856 chr3R 26695566 26695588 chr3R 26695673 26695697 7 108 3.0 2.5 2.8 1.8 131 chr3R 26695566 intergenic not near genes chr3R 26695632 intergenic not near genes chr3R 26695697 intergenic not near genes chr3R_7_26695001 chr3R_26695001 RAL-555 1857 chr3R 26750926 26750947 chr3R 26751053 26751074 9 127 2.0 0.0 1.0 4.5 148 chr3R 26750926 intergenic not near genes chr3R 26751000 intergenic not near genes chr3R 26751074 intergenic not near genes chr3R_9_26750001 chr3R_26750001 RAL-555 1858 chr3R 26770252 26770270 chr3R 26770329 26770347 4 77 1.0 2.0 1.5 1.6 95 chr3R 26770252 intergenic CR45563 + chr3R 26770300 intergenic CR45563 + chr3R 26770347 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-555 1859 chr3R 26789608 26789621 chr3R 26789686 26789700 5 79 0.0 0.0 0.0 5.0 92 chr3R 26789608 intergenic not near genes chr3R 26789654 intergenic not near genes chr3R 26789700 intergenic not near genes chr3R_5_26785001 chr3R_26785001 RAL-555 1860 chr3R 26810553 26810581 chr3R 26811037 26811066 roo 4 484 2.5 4.5 3.5 0.9 513 chr3R 26810553 intron Tl + chr3R 26810810 intron Tl + chr3R 26811066 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-555 1861 chr3R 26953453 26953489 chr3R 26953540 26953574 10 86 3.0 3.0 3.0 2.5 121 chr3R 26953453 intron CG6330 - chr3R 26953514 intron CG6330 - chr3R 26953574 intron CG6330 - chr3R_10_26950001 chr3R_26950001 RAL-555 1862 chr3R 27007406 27007438 chr3R 27016541 27016573 roo 9 9135 2.0 0.5 1.2 4.1 9167 chr3R 27007406 intron RYa-R + chr3R 27011990 intron RYa-R + chr3R 27016573 intron RYa-R + chr3R_9_27010001 chr3R_27010001 RAL-555 1863 chr3R 27140513 27140544 chr3R 27148123 27148154 412 15 7610 5.0 3.5 4.2 2.9 7641 chr3R 27140513 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148154 intron CG6051 - chr3R_15_27140001 chr3R_27140001 RAL-555 1864 chr3R 27292288 27292308 chr3R 27292400 27292418 7 111 1.0 3.5 2.2 2.2 130 chr3R 27292288 intergenic CG3348 - chr3R 27292353 intergenic CG3348 - chr3R 27292418 intergenic CG3348 - chr3R_7_27290001 chr3R_27290001 RAL-555 1865 chr3R 27329482 27329502 chr3R 27329559 27329579 5 77 2.0 3.5 2.8 1.3 97 chr3R 27329482 intergenic CG3330 - chr3R 27329530 intergenic CG3330 - chr3R 27329579 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-555 1866 chr3R 27342792 27342823 chr3R 27351373 27351404 Tirant 11 8581 2.5 2.0 2.2 3.4 8612 chr3R 27342792 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351404 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-555 1867 chr3R 27385690 27385722 chr3R 27385961 27385993 13 271 1.5 4.0 2.8 3.4 303 chr3R 27385690 intron side - chr3R 27385842 intron side - chr3R 27385993 intron side - chr3R_13_27385001 chr3R_27385001 RAL-555 1868 chr3R 27619701 27619730 chr3R 27619816 27619845 11 115 2.5 2.0 2.2 3.4 144 chr3R 27619701 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619845 intron Tusp + chr3R_11_27615001 chr3R_27615001 RAL-555 1869 chr3R 27622231 27622256 chr3R 27622326 27622349 7 94 2.0 3.5 2.8 1.8 118 chr3R 27622231 intron Tusp + chr3R 27622290 intron Tusp + chr3R 27622349 intron Tusp + chr3R_7_27620001 chr3R_27620001 RAL-555 1870 chr3R 27627087 27627116 chr3R 27627189 27627218 9 102 2.5 6.0 4.2 1.7 131 chr3R 27627087 intron Tusp + chr3R 27627152 intron Tusp + chr3R 27627218 intron Tusp + chr3R_9_27625001 chr3R_27625001 RAL-555 1871 chr3R 27706775 27706810 chr3R 27706852 27706887 9 77 1.5 2.0 1.8 3.2 112 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706831 intergenic CG12428 -,CG12877 + chr3R 27706887 intergenic CG12428 -,CG12877 + chr3R_9_27705001 chr3R_27705001 RAL-555 1872 chr3R 27799937 27799964 chr3R 27800019 27800046 6 82 4.0 2.0 3.0 1.5 109 chr3R 27799937 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-555 1873 chr3R 27856761 27856793 chr3R 27858244 27858276 hopper2 8 1482 5.0 5.0 5.0 1.3 1515 chr3R 27856761 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_8_27855001 chr3R_27855001 RAL-555 1874 chr3R 27862952 27862980 chr3R 27868257 27868285 Transpac 9 5305 2.0 2.0 2.0 3.0 5333 chr3R 27862952 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_9_27865001 chr3R_27865001 RAL-555 1875 chr3R 27875700 27875730 chr3R 27882755 27882785 297 13 7055 3.5 5.0 4.2 2.5 7085 chr3R 27875700 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_13_27875001 chr3R_27875001 RAL-555 1876 chr3R 28035494 28035517 chr3R 28035571 28035594 8 77 0.0 1.0 0.5 5.3 100 chr3R 28035494 intron CG34362 + chr3R 28035544 intron CG34362 + chr3R 28035594 intron CG34362 + chr3R_8_28035001 chr3R_28035001 RAL-555 1877 chr3R 28068491 28068529 chr3R 28073933 28073970 I-element 10 5442 3.5 3.0 3.2 2.4 5479 chr3R 28068491 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073970 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-555 1878 chr3R 28102572 28102598 chr3R 28102810 28102836 10 238 1.5 2.0 1.8 3.6 264 chr3R 28102572 intergenic not near genes chr3R 28102704 intergenic not near genes chr3R 28102836 intergenic not near genes chr3R_10_28100001 chr3R_28100001 RAL-555 1879 chr3R 28103322 28103351 chr3R 28103415 28103444 10 92 3.5 2.5 3.0 2.5 122 chr3R 28103322 intergenic not near genes chr3R 28103383 intergenic not near genes chr3R 28103444 intergenic not near genes chr3R_10_28100001 chr3R_28100001 RAL-555 1880 chr3R 28118864 28118881 chr3R 28118945 28118962 5 81 2.5 4.0 3.2 1.2 98 chr3R 28118864 intergenic not near genes chr3R 28118913 intergenic not near genes chr3R 28118962 intergenic not near genes chr3R_5_28115001 chr3R_28115001 RAL-555 1881 chr3R 28173657 28173677 chr3R 28181236 28181256 mdg1 5 7579 5.0 2.5 3.8 1.0 7599 chr3R 28173657 intron CG34354 + chr3R 28177456 intron CG34354 + chr3R 28181256 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-555 1882 chr3R 28201839 28201853 chr3R 28201938 28201951 7 99 3.0 2.0 2.5 2.0 112 chr3R 28201839 intron CG34354 + chr3R 28201895 intron CG34354 + chr3R 28201951 intron CG34354 + chr3R_7_28200001 chr3R_28200001 RAL-555 1883 chr3R 28223906 28223940 chr3R 28224362 28224396 10 456 1.0 1.5 1.2 4.5 490 chr3R 28223906 intron CG34354 + chr3R 28224151 intron CG34354 + chr3R 28224396 intron CG34354 + chr3R_10_28220001 chr3R_28220001 RAL-555 1884 chr3R 28253337 28253372 chr3R 28255847 28255882 jockey 11 2510 1.5 1.0 1.2 5.0 2545 chr3R 28253337 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255882 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-555 1885 chr3R 28282986 28283017 chr3R 28283615 28283646 18 629 4.5 10.0 7.2 2.2 660 chr3R 28282986 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283646 intergenic CG34437 +,CG34436 + chr3R_18_28280001 chr3R_28280001 RAL-555 1886 chr3R 28302105 28302114 chr3R 28302547 28302556 jockey 6 442 4.5 0.5 2.5 1.7 451 chr3R 28302105 intergenic not near genes chr3R 28302330 intergenic not near genes chr3R 28302556 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-555 1887 chr3R 28331514 28331528 chr3R 28331593 28331607 5 79 1.0 2.0 1.5 2.0 93 chr3R 28331514 intron larp - chr3R 28331560 intron larp - chr3R 28331607 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-555 1888 chr3R 28345649 28345662 chr3R 28345725 28345737 4 76 3.5 0.0 1.8 1.4 88 chr3R 28345649 intergenic Moca-cyp + chr3R 28345693 intergenic not near genes chr3R 28345737 intergenic not near genes chr3R_4_28345001 chr3R_28345001 RAL-555 1889 chr3R 28393701 28393731 chr3R 28393801 28393831 10 100 1.5 2.5 2.0 3.3 130 chr3R 28393701 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393831 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-555 1890 chr3R 28478985 28479162 chr3R 28479081 28479245 16 93 4.0 2.5 3.2 3.8 260 chr3R 28478985 intergenic not near genes chr3R 28479115 intergenic not near genes chr3R 28479245 intergenic not near genes chr3R_16_28475001 chr3R_28475001 RAL-555 1891 chr3R 28537819 28537837 chr3R 28537902 28537921 4 84 2.5 4.0 3.2 1.0 102 chr3R 28537819 intron Ppn - chr3R 28537870 intron Ppn - chr3R 28537921 intron Ppn - chr3R_4_28535001 chr3R_28535001 RAL-555 1892 chr3R 28599377 28599410 chr3R 28599524 28599557 13 147 1.5 3.0 2.2 4.1 180 chr3R 28599377 intergenic Noa36 - chr3R 28599467 intergenic Noa36 - chr3R 28599557 intergenic Noa36 - chr3R_13_28595001 chr3R_28595001 RAL-555 1893 chr3R 28640345 28640364 chr3R 28640428 28640446 11 83 0.5 2.5 1.5 4.4 101 chr3R 28640345 intergenic not near genes chr3R 28640396 intergenic not near genes chr3R 28640446 intergenic not near genes chr3R_11_28640001 chr3R_28640001 RAL-555 1894 chr3R 28652983 28653009 chr3R 28653079 28653105 13 96 4.5 2.5 3.5 2.9 122 chr3R 28652983 intergenic not near genes chr3R 28653044 intergenic not near genes chr3R 28653105 intergenic not near genes chr3R_13_28650001 chr3R_28650001 RAL-555 1895 chr3R 28792868 28792893 chr3R 28797962 28797988 jockey 7 5095 1.5 1.5 1.5 2.8 5120 chr3R 28792868 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797988 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-555 1896 chr3R 28805148 28805153 chr3R 28805239 28805245 5 91 2.0 4.5 3.2 1.2 97 chr3R 28805148 intergenic not near genes chr3R 28805196 intergenic not near genes chr3R 28805245 intergenic not near genes chr3R_5_28805001 chr3R_28805001 RAL-555 1897 chr3R 28827686 28827704 chr3R 28827842 28827860 9 156 5.0 3.5 4.2 1.7 174 chr3R 28827686 intron WASp - chr3R 28827773 intron WASp - chr3R 28827860 intron WASp - chr3R_9_28825001 chr3R_28825001 RAL-555 1898 chr3R 21907534 21907534 chr3R 28831798 28831804 171 6924266 22.0 17.0 19.5 8.3 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_171_25365001 chr3R_25365001 RAL-555 1899 chr3R 28845985 28846000 chr3R 28846075 28846090 4 90 4.5 2.5 3.5 0.9 105 chr3R 28845985 exon spg + chr3R 28846038 intron spg + chr3R 28846090 intron spg + chr3R_4_28845001 chr3R_28845001 RAL-555 1900 chr3R 28960509 28960542 chr3R 28960592 28960627 13 85 2.0 1.0 1.5 5.2 118 chr3R 28960509 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960627 intron CG14521 - chr3R_13_28960001 chr3R_28960001 RAL-555 1901 chr3R 28971160 28971194 chr3R 28971241 28971275 5 81 2.0 1.5 1.8 1.8 115 chr3R 28971160 5` UTR CR45669 + chr3R 28971218 5` UTR CR45669 + chr3R 28971275 5` UTR CR45669 + chr3R_5_28970001 chr3R_28970001 RAL-555 1902 chr3R 29009957 29009987 chr3R 29010063 29010093 14 106 1.5 4.0 2.8 3.7 136 chr3R 29009957 intron wat - chr3R 29010025 intron wat - chr3R 29010093 intron wat - chr3R_14_29010001 chr3R_29010001 RAL-555 1903 chr3R 21907534 21907535 chr3R 29013340 29013341 6 7105806 22.0 20.0 21.0 0.3 7105807 chr3R 21907534 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013341 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-555 1904 chr3R 29017133 29017157 chr3R 29017227 29017251 11 94 0.5 2.0 1.2 5.0 118 chr3R 29017133 intron wat - chr3R 29017192 intron wat - chr3R 29017251 intron wat - chr3R_11_29015001 chr3R_29015001 RAL-555 1905 chr3R 29079381 29079410 chr3R 29080753 29080782 NOF 11 1372 3.5 4.0 3.8 2.3 1401 chr3R 29079381 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_11_29080001 chr3R_29080001 RAL-555 1906 chr3R 29213059 29213092 chr3R 29213142 29213175 15 83 5.0 4.0 4.5 2.7 116 chr3R 29213059 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_15_29210001 chr3R_29210001 RAL-555 1907 chr3R 29239222 29239246 chr3R 29245513 29245537 8 6291 2.5 16.5 9.5 0.8 6315 chr3R 29239222 exon CG31427 - chr3R 29242380 exon CG31445 - chr3R 29245537 exon SP1029 - chr3R_8_29240001 chr3R_29240001 RAL-555 1908 chr3R 29257575 29257583 chr3R 29257828 29257836 4 253 1.5 0.0 0.8 2.2 261 chr3R 29257575 intergenic CG45544 + chr3R 29257706 intergenic CG45544 + chr3R 29257836 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-555 1909 chr3R 29264193 29264213 chr3R 29264295 29264315 8 102 0.0 3.0 1.5 3.2 122 chr3R 29264193 intergenic not near genes chr3R 29264254 intergenic not near genes chr3R 29264315 intergenic not near genes chr3R_8_29260001 chr3R_29260001 RAL-555 1910 chr3R 29319824 29319853 chr3R 29320143 29320172 jockey 7 319 2.5 2.5 2.5 2.0 348 chr3R 29319824 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320172 intergenic not near genes chr3R_7_29315001 chr3R_29315001 RAL-555 1911 chr3R 29329171 29329196 chr3R 29329513 29329539 9 343 1.5 3.5 2.5 2.6 368 chr3R 29329171 intergenic not near genes chr3R 29329355 intergenic not near genes chr3R 29329539 intergenic not near genes chr3R_9_29325001 chr3R_29325001 RAL-555 1912 chr3R 29340590 29340607 chr3R 29340667 29340684 4 76 2.0 1.5 1.8 1.4 94 chr3R 29340590 intergenic not near genes chr3R 29340637 intergenic not near genes chr3R 29340684 intergenic not near genes chr3R_4_29340001 chr3R_29340001 RAL-555 1913 chr3R 29356068 29356081 chr3R 29356147 29356162 6 80 2.0 4.5 3.2 1.4 94 chr3R 29356068 intergenic CR45547 - chr3R 29356115 intergenic CR45547 - chr3R 29356162 3` UTR CR45547 - chr3R_6_29355001 chr3R_29355001 RAL-555 1914 chr3R 29384847 29384874 chr3R 29384971 29384998 6 124 1.0 3.5 2.2 1.9 151 chr3R 29384847 intron Ptp99A + chr3R 29384922 intron Ptp99A + chr3R 29384998 intron Ptp99A + chr3R_6_29380001 chr3R_29380001 RAL-555 1915 chr3R 29406623 29406643 chr3R 29407909 29407929 jockey 7 1285 3.5 5.0 4.2 1.3 1306 chr3R 29406623 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-555 1916 chr3R 29472009 29472036 chr3R 29472102 29472129 8 92 1.5 3.5 2.5 2.3 120 chr3R 29472009 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_8_29470001 chr3R_29470001 RAL-555 1917 chr3R 29474432 29474442 chr3R 29474519 29474529 6 87 5.0 5.5 5.2 1.0 97 chr3R 29474432 intron Ptp99A + chr3R 29474480 intron Ptp99A + chr3R 29474529 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-555 1918 chr3R 29505913 29505923 chr3R 29505990 29506000 7 77 1.0 4.5 2.8 1.8 87 chr3R 29505913 intergenic not near genes chr3R 29505956 intergenic not near genes chr3R 29506000 intergenic not near genes chr3R_7_29505001 chr3R_29505001 RAL-555 1919 chr3R 29590376 29590399 chr3R 29590469 29590492 8 93 2.5 3.5 3.0 2.0 116 chr3R 29590376 intron CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590492 intron CG31041 - chr3R_8_29590001 chr3R_29590001 RAL-555 1920 chr3R 29592748 29592765 chr3R 29592826 29592843 4 78 3.5 4.0 3.8 0.8 95 chr3R 29592748 intron alph + chr3R 29592796 intron alph + chr3R 29592843 intron alph + chr3R_4_29590001 chr3R_29590001 RAL-555 1921 chr3R 29627567 29627596 chr3R 29627658 29627687 12 90 0.0 2.5 1.2 5.5 120 chr3R 29627567 intergenic not near genes chr3R 29627627 intergenic not near genes chr3R 29627687 intergenic not near genes chr3R_12_29625001 chr3R_29625001 RAL-555 1922 chr3R 29655652 29655673 chr3R 29655731 29655752 4 79 2.5 0.5 1.5 1.6 100 chr3R 29655652 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655752 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-555 1923 chr3R 29719401 29719423 chr3R 29719487 29719509 5 86 3.5 1.0 2.2 1.6 108 chr3R 29719401 intron CG15506 + chr3R 29719455 intron CG15506 + chr3R 29719509 intron CG15506 + chr3R_5_29715001 chr3R_29715001 RAL-555 1924 chr3R 29738268 29738299 chr3R 29739735 29739766 hobo 14 1467 2.5 5.5 4.0 2.8 1498 chr3R 29738268 intergenic CG1969 +,CG7598 + chr3R 29739017 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_14_29735001 chr3R_29735001 RAL-555 1925 chr3R 29760362 29760387 chr3R 29761563 29761588 pogo 9 1201 3.5 1.5 2.5 2.6 1226 chr3R 29760362 intergenic not near genes chr3R 29760975 intergenic not near genes chr3R 29761588 intergenic not near genes chr3R_9_29760001 chr3R_29760001 RAL-555 1926 chr3R 29880581 29880619 chr3R 29880666 29880699 9 84 3.0 0.5 1.8 3.2 118 chr3R 29880581 intron CG31038 + chr3R 29880640 intron CG31038 + chr3R 29880699 intron CG31038 + chr3R_9_29880001 chr3R_29880001 RAL-555 1927 chr3R 29882017 29882049 chr3R 29891174 29891206 roo 6 9157 3.0 4.0 3.5 1.3 9189 chr3R 29882017 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-555 1928 chr3R 29950581 29950596 chr3R 29950658 29950673 5 77 3.0 4.0 3.5 1.1 92 chr3R 29950581 intergenic TkR99D - chr3R 29950627 intergenic TkR99D - chr3R 29950673 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-555 1929 chr3R 29963475 29963509 chr3R 29963577 29963611 15 102 0.0 2.5 1.2 6.8 136 chr3R 29963475 intron TkR99D - chr3R 29963543 intron TkR99D - chr3R 29963611 intron TkR99D - chr3R_15_29960001 chr3R_29960001 RAL-555 1930 chr3R 29966056 29966072 chr3R 29966140 29966157 4 85 3.0 1.0 2.0 1.3 101 chr3R 29966056 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966157 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-555 1931 chr3R 30013676 30013707 chr3R 30013759 30013789 7 83 1.0 1.0 1.0 3.5 113 chr3R 30013676 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013789 intron CG7920 - chr3R_7_30010001 chr3R_30010001 RAL-555 1932 chr3R 30084857 30084886 chr3R 30086324 30086353 hobo 13 1467 2.0 4.5 3.2 3.1 1496 chr3R 30084857 intron sima + chr3R 30085605 intron sima + chr3R 30086353 intron sima + chr3R_13_30085001 chr3R_30085001 RAL-555 1933 chr3R 30136951 30136979 chr3R 30137029 30137058 6 79 3.0 3.0 3.0 1.5 107 chr3R 30136951 exon AdoR - chr3R 30137004 intron AdoR - chr3R 30137058 intron AdoR - chr3R_6_30135001 chr3R_30135001 RAL-555 1934 chr3R 30181355 30181369 chr3R 30181439 30181455 8 86 2.0 0.0 1.0 4.0 100 chr3R 30181355 3` UTR Bet5 + chr3R 30181405 3` UTR Bet5 + chr3R 30181455 3` UTR Bet5 + chr3R_8_30180001 chr3R_30180001 RAL-555 1935 chr3R 30224650 30224672 chr3R 30224728 30224750 5 78 2.0 3.0 2.5 1.4 100 chr3R 30224650 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224750 intergenic not near genes chr3R_5_30220001 chr3R_30220001 RAL-555 1936 chr3R 30238760 30238778 chr3R 30239924 30239942 1360 8 1164 5.5 1.0 3.2 1.9 1182 chr3R 30238760 intergenic not near genes chr3R 30239351 intergenic not near genes chr3R 30239942 intergenic not near genes chr3R_8_30235001 chr3R_30235001 RAL-555 1937 chr3R 30262576 30262611 chr3R 30262673 30262708 11 97 1.5 0.5 1.0 5.5 132 chr3R 30262576 intergenic not near genes chr3R 30262642 intergenic not near genes chr3R 30262708 intergenic not near genes chr3R_11_30260001 chr3R_30260001 RAL-555 1938 chr3R 30317331 30317359 chr3R 30324923 30324951 roo 4 7592 1.5 3.5 2.5 1.1 7620 chr3R 30317331 intron hdc + chr3R 30321141 intron hdc + chr3R 30324951 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-555 1939 chr3R 30330495 30330525 chr3R 30330575 30330605 9 80 2.0 2.0 2.0 3.0 110 chr3R 30330495 intron hdc + chr3R 30330550 intron hdc + chr3R 30330605 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-555 1940 chr3R 30364843 30364860 chr3R 30365016 30365033 5 173 2.0 5.0 3.5 1.1 190 chr3R 30364843 3` UTR hdc + chr3R 30364938 3` UTR hdc + chr3R 30365033 3` UTR hdc + chr3R_5_30360001 chr3R_30360001 RAL-555 1941 chr3R 30375537 30375567 chr3R 30383162 30383192 412 6 7625 2.5 1.5 2.0 2.0 7655 chr3R 30375537 intergenic not near genes chr3R 30379364 intergenic not near genes chr3R 30383192 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-555 1942 chr3R 30396223 30396245 chr3R 30404489 30404511 roo 5 8266 6.0 3.0 4.5 0.9 8288 chr3R 30396223 intergenic not near genes chr3R 30400367 intergenic not near genes chr3R 30404511 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-555 1943 chr3R 30440688 30440721 chr3R 30440947 30440980 13 259 3.5 3.5 3.5 2.9 292 chr3R 30440688 intron CG15537 - chr3R 30440834 intron CG15537 - chr3R 30440980 intron CG15537 - chr3R_13_30440001 chr3R_30440001 RAL-555 1944 chr3R 30456389 30456418 chr3R 30456469 30456498 9 80 2.5 3.5 3.0 2.2 109 chr3R 30456389 intergenic CG2224 - chr3R 30456444 3` UTR CG2224 - chr3R 30456498 3` UTR CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-555 1945 chr3R 30458012 30458046 chr3R 30458092 30458126 18 80 2.5 3.0 2.8 4.7 114 chr3R 30458012 intron CG2224 - chr3R 30458069 intron CG2224 - chr3R 30458126 intron CG2224 - chr3R_18_30455001 chr3R_30455001 RAL-555 1946 chr3R 30471903 30471933 chr3R 30471979 30472008 8 76 0.0 4.5 2.2 2.5 105 chr3R 30471903 intron PH4alphaEFB + chr3R 30471956 intron PH4alphaEFB + chr3R 30472008 intron PH4alphaEFB + chr3R_8_30470001 chr3R_30470001 RAL-555 1947 chr3R 30480473 30480513 chr3R 30482941 30482981 jockey 9 2468 3.0 4.5 3.8 1.9 2508 chr3R 30480473 intron PH4alphaEFB + chr3R 30481727 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-555 1948 chr3R 30495172 30495187 chr3R 30495291 30495307 4 120 1.0 2.5 1.8 1.4 135 chr3R 30495172 intron PH4alphaMP - chr3R 30495240 intron PH4alphaMP - chr3R 30495307 intron PH4alphaMP - chr3R_4_30495001 chr3R_30495001 RAL-555 1949 chr3R 30498406 30498432 chr3R 30498606 30498632 8 200 0.0 5.0 2.5 2.3 226 chr3R 30498406 intron PH4alphaNE1 - chr3R 30498519 intron PH4alphaNE1 - chr3R 30498632 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-555 1950 chr3R 30544655 30544687 chr3R 30544735 30544767 14 80 2.0 3.5 2.8 3.7 112 chr3R 30544655 intron tmod + chr3R 30544711 intron tmod + chr3R 30544767 intron tmod + chr3R_14_30540001 chr3R_30540001 RAL-555 1951 chr3R 30592515 30592539 chr3R 30592625 30592649 11 110 1.0 2.0 1.5 4.4 134 chr3R 30592515 intergenic CG2246 - chr3R 30592582 intergenic CG2246 - chr3R 30592649 intergenic CG2246 - chr3R_11_30590001 chr3R_30590001 RAL-555 1952 chr3R 30627602 30627639 chr3R 30627682 30627719 16 80 3.5 6.0 4.8 2.8 117 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627719 exon CG2267 - chr3R_16_30625001 chr3R_30625001 RAL-555 1953 chr3R 30679518 30679552 chr3R 30686987 30687021 blood 14 7468 3.5 3.0 3.2 3.3 7503 chr3R 30679518 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_14_30680001 chr3R_30680001 RAL-555 1954 chr3R 30690164 30690192 chr3R 30690248 30690276 6 84 1.0 5.0 3.0 1.5 112 chr3R 30690164 intergenic Spn100A + chr3R 30690220 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-555 1955 chr3R 30700867 30700877 chr3R 30700990 30701000 4 123 1.5 0.0 0.8 2.2 133 chr3R 30700867 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701000 intergenic not near genes chr3R_4_30700001 chr3R_30700001 RAL-555 1956 chr3R 30859413 30859426 chr3R 30859491 30859503 5 78 2.5 3.5 3.0 1.2 90 chr3R 30859413 intergenic not near genes chr3R 30859458 intergenic not near genes chr3R 30859503 intergenic not near genes chr3R_5_30855001 chr3R_30855001 RAL-555 1957 chr3R 30900538 30900562 chr3R 30901673 30901697 4 1135 3.0 1.5 2.2 1.2 1159 chr3R 30900538 3` UTR Cyp4c3 + chr3R 30901118 intron CG33483 - chr3R 30901697 intron CG33483 - chr3R_4_30900001 chr3R_30900001 RAL-555 1958 chr3R 30985688 30985716 chr3R 30985773 30985801 6 85 3.5 3.0 3.2 1.4 113 chr3R 30985688 intron 5-HT7 - chr3R 30985744 intron 5-HT7 - chr3R 30985801 intron 5-HT7 - chr3R_6_30985001 chr3R_30985001 RAL-555 1959 chr3R 31042109 31042137 chr3R 31042196 31042223 10 87 4.5 4.0 4.2 1.9 114 chr3R 31042109 intron CanA1 + chr3R 31042166 intron CanA1 + chr3R 31042223 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-555 1960 chr3R 31067023 31067057 chr3R 31067150 31067184 11 126 1.5 5.0 3.2 2.6 161 chr3R 31067023 intron Sox100B + chr3R 31067104 intron Sox100B + chr3R 31067184 intron Sox100B + chr3R_11_31065001 chr3R_31065001 RAL-555 1961 chr3R 31074230 31074262 chr3R 31081828 31081860 springer 8 7598 2.0 2.0 2.0 2.7 7630 chr3R 31074230 intron Sox100B + chr3R 31078045 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_8_31075001 chr3R_31075001 RAL-555 1962 chr3R 31146750 31146784 chr3R 31146828 31146861 12 78 2.5 4.0 3.2 2.9 111 chr3R 31146750 intron Gycbeta100B + chr3R 31146806 intron Gycbeta100B + chr3R 31146861 intron Gycbeta100B + chr3R_12_31145001 chr3R_31145001 RAL-555 1963 chr3R 31270899 31270908 chr3R 31270981 31270988 4 82 7.0 0.0 3.5 0.9 89 chr3R 31270899 intergenic not near genes chr3R 31270944 intergenic not near genes chr3R 31270988 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-555 1964 chr3R 31274366 31274395 chr3R 31274444 31274472 9 77 2.5 2.5 2.5 2.6 106 chr3R 31274366 intergenic not near genes chr3R 31274419 intergenic not near genes chr3R 31274472 intergenic not near genes chr3R_9_31270001 chr3R_31270001 RAL-555 1965 chr3R 31279372 31279403 chr3R 31285562 31285594 diver 13 6190 4.5 2.5 3.5 2.9 6222 chr3R 31279372 intergenic not near genes chr3R 31282483 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_13_31280001 chr3R_31280001 RAL-555 1966 chr3R 31348057 31348092 chr3R 31348134 31348169 17 77 2.5 3.0 2.8 4.5 112 chr3R 31348057 intron CG34347 + chr3R 31348113 intron CG34347 + chr3R 31348169 intron CG34347 + chr3R_17_31345001 chr3R_31345001 RAL-555 1967 chr3R 31412709 31412727 chr3R 31412802 31412817 5 92 1.5 1.5 1.5 2.0 108 chr3R 31412709 intron Gprk2 + chr3R 31412763 intron Gprk2 + chr3R 31412817 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-555 1968 chr3R 31413087 31413118 chr3R 31418287 31418318 copia 18 5200 2.5 0.0 1.2 8.2 5231 chr3R 31413087 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_18_31415001 chr3R_31415001 RAL-555 1969 chr3R 31426882 31426910 chr3R 31426974 31427002 11 92 2.0 3.5 2.8 2.9 120 chr3R 31426882 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427002 intron Gprk2 + chr3R_11_31425001 chr3R_31425001 RAL-555 1970 chr3R 31435362 31435390 chr3R 31435514 31435542 9 152 3.0 3.5 3.2 2.1 180 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435542 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-555 1971 chr3R 31606142 31606169 chr3R 31606303 31606328 8 161 2.5 0.0 1.2 3.6 186 chr3R 31606142 intron CycG - chr3R 31606235 intron CycG - chr3R 31606328 intron CycG - chr3R_8_31605001 chr3R_31605001 RAL-555 1972 chr3R 31630063 31630083 chr3R 31630168 31630187 8 105 1.5 2.5 2.0 2.7 124 chr3R 31630063 intron kek6 + chr3R 31630125 intron kek6 + chr3R 31630187 intron kek6 + chr3R_8_31630001 chr3R_31630001 RAL-555 1973 chr3R 31691534 31691560 chr3R 31696300 31696326 Doc 11 4765 4.0 6.5 5.2 1.8 4792 chr3R 31691534 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-555 1974 chr3R 31726670 31726690 chr3R 31726756 31726776 5 86 0.0 4.5 2.2 1.6 106 chr3R 31726670 intron ttk + chr3R 31726723 intron ttk + chr3R 31726776 intron ttk + chr3R_5_31725001 chr3R_31725001 RAL-555 1975 chr3R 31774874 31774891 chr3R 31775019 31775036 5 145 6.0 2.0 4.0 1.0 162 chr3R 31774874 3` UTR sip3 + chr3R 31774955 3` UTR sip3 + chr3R 31775036 3` UTR sip3 + chr3R_5_31770001 chr3R_31770001 RAL-555 1976 chr3R 31851233 31851266 chr3R 31851316 31851348 13 83 2.0 2.5 2.2 4.1 115 chr3R 31851233 intergenic heph - chr3R 31851290 intergenic heph - chr3R 31851348 intergenic heph - chr3R_13_31850001 chr3R_31850001 RAL-555 1977 chr3R 31880315 31880327 chr3R 31880391 31880402 5 75 1.5 1.5 1.5 2.0 87 chr3R 31880315 intron heph - chr3R 31880358 intron heph - chr3R 31880402 intron heph - chr3R_5_31880001 chr3R_31880001 RAL-555 1978 chr3R 31911685 31911810 chr3R 31911763 31911896 13 85 0.0 0.0 0.0 13.0 211 chr3R 31911685 intron heph - chr3R 31911790 intron heph - chr3R 31911896 intron heph - chr3R_13_31910001 chr3R_31910001 RAL-555 1979 chr3R 31931198 31931215 chr3R 31931279 31931298 8 83 4.0 5.0 4.5 1.5 100 chr3R 31931198 intron heph - chr3R 31931248 intron heph - chr3R 31931298 intron heph - chr3R_8_31930001 chr3R_31930001 RAL-555 1980 chr3R 31953140 31953176 chr3R 31953218 31953254 14 78 2.5 2.5 2.5 4.0 114 chr3R 31953140 intron heph - chr3R 31953197 intron heph - chr3R 31953254 intron heph - chr3R_14_31950001 chr3R_31950001 RAL-555 1981 chr3R 31991107 31991138 chr3R 31991186 31991217 7 79 2.0 2.5 2.2 2.2 110 chr3R 31991107 intron heph - chr3R 31991162 intron heph - chr3R 31991217 intron heph - chr3R_7_31990001 chr3R_31990001 RAL-555 1982 chr3R 31997991 31998024 chr3R 32005461 32005494 blood 12 7470 2.5 3.5 3.0 3.0 7503 chr3R 31997991 intron heph - chr3R 32001742 intron heph - chr3R 32005494 intron heph - chr3R_12_32000001 chr3R_32000001 RAL-555 1983 chr3R 32013272 32013305 chr3R 32013390 32013423 9 118 4.0 0.5 2.2 2.8 151 chr3R 32013272 intron,5` UTR heph -,CR45556 + chr3R 32013348 intron,5` UTR heph -,CR45556 + chr3R 32013423 intron heph - chr3R_9_32010001 chr3R_32010001 RAL-555 1984 chr3R 32039964 32039988 chr3R 32040065 32040089 14 101 1.5 3.5 2.5 4.0 125 chr3R 32039964 intergenic CG2053 + chr3R 32040026 intergenic CG2053 + chr3R 32040089 intergenic CG2053 + chr3R_14_32040001 chr3R_32040001 RAL-555 1985 chr4 61369 61386 chr4 61581 61598 5 212 2.5 2.5 2.5 1.4 229 chr4 61369 intron CR43957 + chr4 61484 intron CR43957 + chr4 61598 intron CR43957 + chr4_5_60001 chr4_60001 RAL-555 1986 chr4 76495 76517 chr4 81936 81960 I-element 4 5442 2.0 2.0 2.0 1.3 5465 chr4 76495 intron pan + chr4 79228 intron pan + chr4 81960 intron pan + chr4_4_75001 chr4_75001 RAL-555 1987 chr4 319989 320017 chr4 328164 328193 Stalker2 4 8176 1.0 1.5 1.2 1.8 8204 chr4 319989 3` UTR CG32850 + chr4 324091 intron CG32850 + chr4 328193 3` UTR,3` UTR CG32850 +,PMCA - chr4_4_320001 chr4_320001 RAL-555 1988 chr4 662193 662201 chr4 662838 662845 INE-1 4 644 4.0 3.0 3.5 0.9 652 chr4 662193 intron gw - chr4 662519 intron gw - chr4 662845 5` UTR gw - chr4_4_660001 chr4_660001 RAL-555 1989 chr4 671603 671632 chr4 680186 680215 Tirant 6 8583 2.0 4.0 3.0 1.5 8612 chr4 671603 intron CG11360 + chr4 675909 intron CG11360 + chr4 680215 intron CG11360 + chr4_6_675001 chr4_675001 RAL-555 1990 chr4 1096317 1096336 chr4 1096495 1096514 5 178 5.0 3.0 4.0 1.0 197 chr4 1096317 intron sv + chr4 1096416 intron sv + chr4 1096514 intron sv + chr4_5_1095001 chr4_1095001 RAL-555 1991 chrX 295858 295880 chrX 303478 303500 412 6 7620 1.5 1.5 1.5 2.4 7642 chrX 295858 intron CG3777 + chrX 299679 intron CG3777 + chrX 303500 intron CG3777 + chrX_6_295001 chrX_295001 RAL-555 1992 chrX 318477 318499 chrX 323560 323585 flea 7 5086 2.5 2.5 2.5 2.0 5108 chrX 318477 intron,intron CG3777 +,CG32816 - chrX 321031 intron,intron CG3777 +,CG32816 - chrX 323585 intron,intron CG3777 +,CG32816 - chrX_7_320001 chrX_320001 RAL-555 1993 chrX 325632 325645 chrX 325717 325730 8 85 1.5 1.0 1.2 3.6 98 chrX 325632 intron,intron CG3777 +,CG32816 - chrX 325681 intron,intron CG3777 +,CG32816 - chrX 325730 intron,intron CG3777 +,CG32816 - chrX_8_325001 chrX_325001 RAL-555 1994 chrX 428424 428452 chrX 434609 434637 3S18 5 6185 5.0 3.0 4.0 1.0 6213 chrX 428424 intron CG32816 - chrX 431530 intron CG32816 - chrX 434637 intron CG32816 - chrX_5_430001 chrX_430001 RAL-555 1995 chrX 440994 441023 chrX 441072 441101 9 78 1.5 1.0 1.2 4.1 107 chrX 440994 intron CG32816 - chrX 441048 intron CG32816 - chrX 441101 intron CG32816 - chrX_9_440001 chrX_440001 RAL-555 1996 chrX 450365 450395 chrX 450443 450473 10 78 1.5 1.5 1.5 4.0 108 chrX 450365 intron CG32816 - chrX 450419 intron CG32816 - chrX 450473 intron CG32816 - chrX_10_450001 chrX_450001 RAL-555 1997 chrX 494603 494635 chrX 494695 494727 11 92 3.0 4.0 3.5 2.4 124 chrX 494603 intergenic CG17778 + chrX 494665 5` UTR CG17778 + chrX 494727 intron CG17778 + chrX_11_490001 chrX_490001 RAL-555 1998 chrX 547630 547662 chrX 547874 547905 8 244 3.5 4.0 3.8 1.7 275 chrX 547630 intron Appl + chrX 547768 intron Appl + chrX 547905 intron Appl + chrX_8_545001 chrX_545001 RAL-555 1999 chrX 551425 551450 chrX 558987 559012 412 6 7562 2.5 2.0 2.2 1.9 7587 chrX 551425 intron Appl + chrX 555218 intron Appl + chrX 559012 intron Appl + chrX_6_555001 chrX_555001 RAL-555 2000 chrX 561575 561580 chrX 561671 561676 5 96 6.0 3.0 4.5 0.9 101 chrX 561575 intron Appl + chrX 561626 intron Appl + chrX 561676 intron Appl + chrX_5_560001 chrX_560001 RAL-555 2001 chrX 802285 802310 chrX 802362 802387 6 76 4.5 1.0 2.8 1.6 102 chrX 802285 exon CG13359 - chrX 802336 exon CG13359 - chrX 802387 exon CG13359 - chrX_6_800001 chrX_800001 RAL-555 2002 chrX 827608 827635 chrX 835399 835425 roo 14 7791 4.0 4.5 4.2 2.7 7817 chrX 827608 intron CG43867 - chrX 831516 intron CG43867 - chrX 835425 intron CG43867 - chrX_14_830001 chrX_830001 RAL-555 2003 chrX 977319 977347 chrX 977408 977435 12 89 1.0 0.5 0.8 6.7 116 chrX 977319 intergenic not near genes chrX 977377 intergenic not near genes chrX 977435 intergenic not near genes chrX_12_975001 chrX_975001 RAL-555 2004 chrX 1024451 1024464 chrX 1024533 1024546 7 82 3.0 4.5 3.8 1.5 95 chrX 1024451 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024498 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024546 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_7_1020001 chrX_1020001 RAL-555 2005 chrX 1053117 1053123 chrX 16983076 16983076 5 15929958 6.5 9.5 8.0 0.6 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-555 2006 chrX 1277236 1277247 chrX 1277403 1277415 5 168 4.0 4.0 4.0 1.0 179 chrX 1277236 intergenic not near genes chrX 1277326 intergenic not near genes chrX 1277415 intergenic not near genes chrX_5_1275001 chrX_1275001 RAL-555 2007 chrX 1308115 1308148 chrX 1308199 1308232 15 84 0.5 3.5 2.0 5.0 117 chrX 1308115 intron DAAM - chrX 1308174 intron DAAM - chrX 1308232 intron DAAM - chrX_15_1305001 chrX_1305001 RAL-555 2008 chrX 1357785 1357804 chrX 1367954 1367974 Doc 5 10170 2.5 4.0 3.2 1.2 10189 chrX 1357785 intergenic png - chrX 1362880 intergenic not near genes chrX 1367974 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-555 2009 chrX 1518039 1518075 chrX 1523440 1523477 jockey 8 5402 1.0 2.5 1.8 2.9 5438 chrX 1518039 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523477 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-555 2010 chrX 1554506 1554543 chrX 1554663 1554700 5 157 18.5 11.0 14.8 0.3 194 chrX 1554506 exon Mur2B - chrX 1554603 intron Mur2B - chrX 1554700 exon Mur2B - chrX_5_1550001 chrX_1550001 RAL-555 2011 chrX 1627978 1627998 chrX 1635446 1635466 gtwin 14 7468 5.0 4.0 4.5 2.5 7488 chrX 1627978 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635466 intron,intron Mur2B -,br + chrX_14_1630001 chrX_1630001 RAL-555 2012 chrX 1674862 1674876 chrX 1674938 1674950 7 76 5.0 0.5 2.8 1.8 88 chrX 1674862 3` UTR CG32809 - chrX 1674906 3` UTR CG32809 - chrX 1674950 3` UTR CG32809 - chrX_7_1670001 chrX_1670001 RAL-555 2013 chrX 1930535 1930558 chrX 1938106 1938128 opus 9 7571 2.5 3.0 2.8 2.4 7593 chrX 1930535 intergenic CG11596 + chrX 1934332 intergenic not near genes chrX 1938128 3` UTR CG3857 - chrX_9_1930001 chrX_1930001 RAL-555 2014 chrX 1954888 1954918 chrX 1962828 1962857 Stalker2 6 7940 2.5 2.0 2.2 1.9 7969 chrX 1954888 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962857 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-555 2015 chrX 2353520 2353553 chrX 2353605 2353638 9 85 2.0 3.0 2.5 2.6 118 chrX 2353520 intron ptr - chrX 2353579 intron ptr - chrX 2353638 intron ptr - chrX_9_2350001 chrX_2350001 RAL-555 2016 chrX 2399839 2399860 chrX 2408191 2408210 roo 4 8352 2.5 0.0 1.2 1.8 8371 chrX 2399839 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408210 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-555 2017 chrX 2578809 2578845 chrX 2578901 2578937 16 92 2.0 3.5 2.8 4.2 128 chrX 2578809 intergenic Pdfr +,Vha36-3 - chrX 2578873 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_16_2575001 chrX_2575001 RAL-555 2018 chrX 2664384 2664414 chrX 2665530 2665560 1360 8 1146 4.5 3.0 3.8 1.7 1176 chrX 2664384 intron sgg + chrX 2664972 intron sgg + chrX 2665560 intron sgg + chrX_8_2660001 chrX_2660001 RAL-555 2019 chrX 2844897 2844912 chrX 2852307 2852322 mdg1 5 7409 3.5 3.0 3.2 1.2 7425 chrX 2844897 intron kirre + chrX 2848610 intron kirre + chrX 2852322 intron kirre + chrX_5_2845001 chrX_2845001 RAL-555 2020 chrX 2903496 2903500 chrX 2903739 2903744 4 244 4.0 0.5 2.2 1.2 248 chrX 2903496 intron kirre + chrX 2903620 intron kirre + chrX 2903744 intron kirre + chrX_4_2900001 chrX_2900001 RAL-555 2021 chrX 2932237 2932253 chrX 2932318 2932336 6 82 1.5 1.5 1.5 2.4 99 chrX 2932237 intron,exon kirre +,CG32793 + chrX 2932286 intron,exon kirre +,CG32793 + chrX 2932336 intron,exon kirre +,CG32793 + chrX_6_2930001 chrX_2930001 RAL-555 2022 chrX 2969738 2969769 chrX 2969824 2969855 10 86 2.5 2.0 2.2 3.1 117 chrX 2969738 intron,intron kirre +,rst - chrX 2969796 intron,intron kirre +,rst - chrX 2969855 intron,intron kirre +,rst - chrX_10_2965001 chrX_2965001 RAL-555 2023 chrX 3005814 3005842 chrX 3005893 3005919 4 78 0.5 2.5 1.5 1.6 105 chrX 3005814 intron kirre + chrX 3005866 intron kirre + chrX 3005919 intron kirre + chrX_4_3005001 chrX_3005001 RAL-555 2024 chrX 3038738 3038765 chrX 3038826 3038853 6 88 3.0 3.0 3.0 1.5 115 chrX 3038738 intron kirre + chrX 3038796 intron kirre + chrX 3038853 intron kirre + chrX_6_3035001 chrX_3035001 RAL-555 2025 chrX 3058022 3058052 chrX 3058263 3058293 pogo 8 241 2.0 3.5 2.8 2.1 271 chrX 3058022 intron kirre + chrX 3058158 intron kirre + chrX 3058293 intron kirre + chrX_8_3055001 chrX_3055001 RAL-555 2026 chrX 3075634 3075667 chrX 3080940 3080973 Transpac 9 5305 1.5 4.0 2.8 2.4 5339 chrX 3075634 intron kirre + chrX 3078304 intron kirre + chrX 3080973 intron kirre + chrX_9_3075001 chrX_3075001 RAL-555 2027 chrX 3120072 3120096 chrX 3120150 3120172 4 77 0.0 2.5 1.2 1.8 100 chrX 3120072 intron kirre + chrX 3120122 intron kirre + chrX 3120172 intron kirre + chrX_4_3120001 chrX_3120001 RAL-555 2028 chrX 3178236 3178256 chrX 3178318 3178339 6 83 1.0 3.0 2.0 2.0 103 chrX 3178236 intron dnc + chrX 3178288 intron dnc + chrX 3178339 intron dnc + chrX_6_3175001 chrX_3175001 RAL-555 2029 chrX 3243630 3243661 chrX 3243720 3243751 10 90 2.5 3.0 2.8 2.6 121 chrX 3243630 intron dnc + chrX 3243690 intron dnc + chrX 3243751 intron dnc + chrX_10_3240001 chrX_3240001 RAL-555 2030 chrX 3306343 3306364 chrX 3306425 3306446 5 82 2.0 0.0 1.0 2.5 103 chrX 3306343 intron dnc + chrX 3306394 intron dnc + chrX 3306446 intron dnc + chrX_5_3305001 chrX_3305001 RAL-555 2031 chrX 3334322 3334340 chrX 3334400 3334418 11 78 3.5 2.0 2.8 2.9 96 chrX 3334322 exon,intron dnc +,CR44886 - chrX 3334370 intron,intron dnc +,CR44886 - chrX 3334418 intron,intron dnc +,CR44886 - chrX_11_3330001 chrX_3330001 RAL-555 2032 chrX 3404471 3404503 chrX 3404709 3404741 13 238 1.0 2.5 1.8 4.6 270 chrX 3404471 intron,intron CR44999 +,CG12535 - chrX 3404606 intron,intron CR44999 +,CG12535 - chrX 3404741 intron,intron CR44999 +,CG12535 - chrX_13_3400001 chrX_3400001 RAL-555 2033 chrX 3415019 3415042 chrX 3421204 3421227 3S18 8 6184 1.5 1.0 1.2 3.6 6208 chrX 3415019 intron,intron CR44999 +,CG12535 - chrX 3418123 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-555 2034 chrX 3493107 3493109 chrX 3502264 3502268 roo 4 9158 4.0 0.5 2.2 1.2 9161 chrX 3493107 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502268 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-555 2035 chrX 3513758 3513785 chrX 3513841 3513868 4 83 1.0 0.0 0.5 2.7 110 chrX 3513758 intron,intron CR44999 +,CG32791 - chrX 3513813 intron,intron CR44999 +,CG32791 - chrX 3513868 intron,intron CR44999 +,CG32791 - chrX_4_3510001 chrX_3510001 RAL-555 2036 chrX 3590007 3590019 chrX 3590133 3590144 7 126 2.5 6.0 4.2 1.3 137 chrX 3590007 intron AstA-R1 + chrX 3590076 intron AstA-R1 + chrX 3590144 intron AstA-R1 + chrX_7_3590001 chrX_3590001 RAL-555 2037 chrX 3595028 3595048 chrX 3595105 3595126 4 78 0.5 4.5 2.5 1.1 98 chrX 3595028 intron AstA-R1 + chrX 3595077 intron AstA-R1 + chrX 3595126 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-555 2038 chrX 3597553 3597581 chrX 3619720 3619747 roo 12 22168 4.5 0.5 2.5 3.4 22194 chrX 3597553 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619747 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-555 2039 chrX 3629853 3629868 chrX 3629938 3629953 6 85 4.5 1.5 3.0 1.5 100 chrX 3629853 intron AstA-R1 + chrX 3629903 intron AstA-R1 + chrX 3629953 intron AstA-R1 + chrX_6_3625001 chrX_3625001 RAL-555 2040 chrX 3630545 3630574 chrX 3630621 3630650 8 75 0.0 3.0 1.5 3.2 105 chrX 3630545 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630650 intron AstA-R1 + chrX_8_3630001 chrX_3630001 RAL-555 2041 chrX 3713103 3713134 chrX 3713211 3713242 5 108 3.5 2.0 2.8 1.3 139 chrX 3713103 intron Rala - chrX 3713172 intron Rala - chrX 3713242 intron Rala - chrX_5_3710001 chrX_3710001 RAL-555 2042 chrX 3726768 3726795 chrX 3730165 3730192 NOF 6 3397 1.0 4.0 2.5 1.7 3424 chrX 3726768 intron tlk + chrX 3728480 intron tlk + chrX 3730192 intron tlk + chrX_6_3725001 chrX_3725001 RAL-555 2043 chrX 3866108 3866137 chrX 3866186 3866215 5 78 1.5 0.5 1.0 2.5 107 chrX 3866108 intron yin - chrX 3866162 intron yin - chrX 3866215 intron yin - chrX_5_3865001 chrX_3865001 RAL-555 2044 chrX 3881269 3881303 chrX 3881408 3881442 6 139 2.5 0.0 1.2 2.7 173 chrX 3881269 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-555 2045 chrX 3922131 3922136 chrX 3922402 3922411 4 272 0.0 1.5 0.8 2.2 280 chrX 3922131 intron CG42541 - chrX 3922271 intron CG42541 - chrX 3922411 intron CG42541 - chrX_4_3920001 chrX_3920001 RAL-555 2046 chrX 3930062 3930074 chrX 3930143 3930155 4 81 1.5 2.0 1.8 1.4 93 chrX 3930062 5` UTR CG42541 - chrX 3930108 5` UTR CG42541 - chrX 3930155 5` UTR CG42541 - chrX_4_3930001 chrX_3930001 RAL-555 2047 chrX 3986864 3986888 chrX 3994497 3994521 412 7 7633 2.0 2.0 2.0 2.3 7657 chrX 3986864 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994521 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-555 2048 chrX 4048502 4048521 chrX 4048578 4048597 11 76 4.5 2.0 3.2 2.6 95 chrX 4048502 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048597 3` UTR CR45482 - chrX_11_4045001 chrX_4045001 RAL-555 2049 chrX 4101886 4101899 chrX 4101964 4101977 6 78 1.0 5.5 3.2 1.4 91 chrX 4101886 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101977 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-555 2050 chrX 4132672 4132692 chrX 4132840 4132858 6 168 2.5 1.0 1.8 2.1 186 chrX 4132672 3` UTR GlcAT-I + chrX 4132765 3` UTR GlcAT-I + chrX 4132858 intergenic GlcAT-I +,Fas2 - chrX_6_4130001 chrX_4130001 RAL-555 2051 chrX 4157897 4157903 chrX 4164950 4164955 297 6 7053 4.0 4.0 4.0 1.2 7058 chrX 4157897 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164955 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-555 2052 chrX 4203522 4203540 chrX 4203601 4203620 4 80 1.5 3.0 2.2 1.2 98 chrX 4203522 intron Fas2 - chrX 4203571 intron Fas2 - chrX 4203620 intron Fas2 - chrX_4_4200001 chrX_4200001 RAL-555 2053 chrX 4252951 4252981 chrX 4253036 4253069 9 87 4.0 2.0 3.0 2.2 118 chrX 4252951 intergenic CG15576 - chrX 4253010 intergenic CG15576 - chrX 4253069 intergenic CG15576 - chrX_9_4250001 chrX_4250001 RAL-555 2054 chrX 4324393 4324415 chrX 4324470 4324492 9 77 1.0 1.0 1.0 4.5 99 chrX 4324393 intron norpA + chrX 4324442 intron norpA + chrX 4324492 intron norpA + chrX_9_4320001 chrX_4320001 RAL-555 2055 chrX 3765229 3765236 chrX 4343744 4343751 5 578515 6.5 14.5 10.5 0.4 578522 chrX 3765229 intron tlk + chrX 4054490 intergenic not near genes chrX 4343751 intron norpA + chrX_5_4050001 chrX_4050001 RAL-555 2056 chrX 4361434 4361461 chrX 4361511 4361538 7 77 2.0 3.0 2.5 2.0 104 chrX 4361434 intron norpA + chrX 4361486 intron norpA + chrX 4361538 intron norpA + chrX_7_4360001 chrX_4360001 RAL-555 2057 chrX 4436463 4436467 chrX 4436539 4436543 4 76 3.5 0.0 1.8 1.4 80 chrX 4436463 intron,intron CR32773 -,bi + chrX 4436503 intron,intron CR32773 -,bi + chrX 4436543 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-555 2058 chrX 4525756 4525771 chrX 4525848 4525863 6 92 1.0 1.0 1.0 3.0 107 chrX 4525756 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525863 intron CR32773 - chrX_6_4525001 chrX_4525001 RAL-555 2059 chrX 4700391 4700420 chrX 4700734 4700763 jockey 5 343 2.0 2.5 2.2 1.6 372 chrX 4700391 3` UTR ctp + chrX 4700577 3` UTR ctp + chrX 4700763 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-555 2060 chrX 4731813 4731830 chrX 4736906 4736923 jockey 6 5093 4.0 0.0 2.0 2.0 5110 chrX 4731813 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736923 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-555 2061 chrX 4755423 4755431 chrX 4755500 4755508 7 77 0.0 5.0 2.5 2.0 85 chrX 4755423 intergenic not near genes chrX 4755466 intergenic not near genes chrX 4755508 intergenic not near genes chrX_7_4755001 chrX_4755001 RAL-555 2062 chrX 4763248 4763280 chrX 4763736 4763768 Stalker4 6 488 3.0 2.5 2.8 1.6 520 chrX 4763248 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763768 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-555 2063 chrX 4792381 4792404 chrX 4792814 4792837 jockey 4 433 1.5 2.5 2.0 1.3 456 chrX 4792381 intergenic not near genes chrX 4792609 intergenic not near genes chrX 4792837 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-555 2064 chrX 4827970 4827997 chrX 4835341 4835368 Stalker4 9 7371 4.5 3.5 4.0 1.8 7398 chrX 4827970 intergenic not near genes chrX 4831669 intergenic not near genes chrX 4835368 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-555 2065 chrX 4848773 4848784 chrX 4848876 4848887 4 103 1.0 2.5 1.8 1.4 114 chrX 4848773 intron CG42594 + chrX 4848830 intron CG42594 + chrX 4848887 intron CG42594 + chrX_4_4845001 chrX_4845001 RAL-555 2066 chrX 4885771 4885806 chrX 4885864 4885899 17 93 0.5 2.0 1.2 7.7 128 chrX 4885771 intron CG42594 + chrX 4885835 intron CG42594 + chrX 4885899 intron CG42594 + chrX_17_4885001 chrX_4885001 RAL-555 2067 chrX 4990042 4990066 chrX 4997256 4997280 roo 8 7213 2.0 1.5 1.8 2.9 7238 chrX 4990042 intron CR44833 - chrX 4993661 intron CR44833 - chrX 4997280 intron CR44833 - chrX_8_4990001 chrX_4990001 RAL-555 2068 chrX 5096282 5096304 chrX 5103847 5103869 springer 5 7565 4.0 3.5 3.8 1.0 7587 chrX 5096282 intron,intron CG15465 +,rg + chrX 5100076 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-555 2069 chrX 5272818 5272848 chrX 5272905 5272935 10 86 2.5 0.0 1.2 4.5 117 chrX 5272818 intergenic not near genes chrX 5272876 intergenic not near genes chrX 5272935 intergenic not near genes chrX_10_5270001 chrX_5270001 RAL-555 2070 chrX 5291506 5291511 chrX 5291592 5291597 5 86 8.0 4.5 6.2 0.7 91 chrX 5291506 intergenic not near genes chrX 5291552 intergenic not near genes chrX 5291597 intergenic not near genes chrX_5_5290001 chrX_5290001 RAL-555 2071 chrX 5338711 5338735 chrX 5339961 5339988 jockey 5 1252 0.5 3.0 1.8 1.8 1277 chrX 5338711 intergenic not near genes chrX 5339350 intergenic not near genes chrX 5339988 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-555 2072 chrX 5345034 5345062 chrX 5345220 5345248 6 186 1.5 2.0 1.8 2.1 214 chrX 5345034 intron SK + chrX 5345141 intron SK + chrX 5345248 intron SK + chrX_6_5345001 chrX_5345001 RAL-555 2073 chrX 5349280 5349302 chrX 5349357 5349379 5 77 3.5 2.5 3.0 1.2 99 chrX 5349280 intron SK + chrX 5349330 intron SK + chrX 5349379 intron SK + chrX_5_5345001 chrX_5345001 RAL-555 2074 chrX 5366305 5366329 chrX 5366433 5366457 9 128 4.5 3.0 3.8 1.9 152 chrX 5366305 intron SK + chrX 5366381 intron SK + chrX 5366457 intron SK + chrX_9_5365001 chrX_5365001 RAL-555 2075 chrX 5456599 5456613 chrX 5456715 5456729 7 116 4.5 2.5 3.5 1.6 130 chrX 5456599 intron SPR + chrX 5456664 intron SPR + chrX 5456729 intron SPR + chrX_7_5455001 chrX_5455001 RAL-555 2076 chrX 5512041 5512065 chrX 5512141 5512170 4 102 1.0 0.5 0.8 2.2 129 chrX 5512041 intergenic not near genes chrX 5512106 intergenic not near genes chrX 5512170 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-555 2077 chrX 5541569 5541600 chrX 5541650 5541681 9 81 3.0 3.5 3.2 2.1 112 chrX 5541569 intron Vsx2 - chrX 5541625 intron Vsx2 - chrX 5541681 intron Vsx2 - chrX_9_5540001 chrX_5540001 RAL-555 2078 chrX 5725032 5725053 chrX 5725135 5725156 5 103 3.5 3.0 3.2 1.2 124 chrX 5725032 intron CG32758 - chrX 5725094 intron CG32758 - chrX 5725156 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-555 2079 chrX 5883810 5883836 chrX 5884049 5884077 pogo 10 241 3.0 3.5 3.2 2.4 267 chrX 5883810 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884077 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-555 2080 chrX 6115900 6115923 chrX 6116037 6116058 6 137 1.5 3.0 2.2 1.9 158 chrX 6115900 intron Ca-alpha1T - chrX 6115979 intron Ca-alpha1T - chrX 6116058 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-555 2081 chrX 6171586 6171613 chrX 6179015 6179046 Quasimodo 8 7432 1.5 1.5 1.5 3.2 7460 chrX 6171586 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179046 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-555 2082 chrX 6197235 6197247 chrX 6197315 6197327 6 80 5.0 0.5 2.8 1.6 92 chrX 6197235 exon CG32751 - chrX 6197281 exon CG32751 - chrX 6197327 exon CG32751 - chrX_6_6195001 chrX_6195001 RAL-555 2083 chrX 6306553 6306569 chrX 6306630 6306646 6 77 3.5 2.5 3.0 1.5 93 chrX 6306553 3` UTR CG3823 + chrX 6306600 3` UTR CG3823 + chrX 6306646 3` UTR CG3823 + chrX_6_6305001 chrX_6305001 RAL-555 2084 chrX 6312189 6312223 chrX 6312272 6312306 12 83 3.0 2.0 2.5 3.4 117 chrX 6312189 intron CG15894 + chrX 6312248 intron CG15894 + chrX 6312306 intron CG15894 + chrX_12_6310001 chrX_6310001 RAL-555 2085 chrX 6314421 6314447 chrX 6314497 6314523 8 76 1.5 3.0 2.2 2.5 102 chrX 6314421 intron CG15894 + chrX 6314472 intron CG15894 + chrX 6314523 intron CG15894 + chrX_8_6310001 chrX_6310001 RAL-555 2086 chrX 6335216 6335244 chrX 6337726 6337754 Tirant 7 2510 0.5 3.0 1.8 2.5 2538 chrX 6335216 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-555 2087 chrX 6392871 6392895 chrX 6397636 6397660 Doc 7 4765 4.0 5.0 4.5 1.3 4789 chrX 6392871 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397660 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-555 2088 chrX 6404837 6404868 chrX 6404964 6404993 11 126 1.0 4.5 2.8 2.9 156 chrX 6404837 intergenic not near genes chrX 6404915 intergenic not near genes chrX 6404993 intergenic not near genes chrX_11_6400001 chrX_6400001 RAL-555 2089 chrX 6562823 6562845 chrX 6571305 6571327 Tirant 6 8481 4.0 3.5 3.8 1.2 8504 chrX 6562823 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571327 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-555 2090 chrX 6618464 6618473 chrX 6618542 6618551 6 78 3.5 5.0 4.2 1.2 87 chrX 6618464 intron pigs + chrX 6618508 intron pigs + chrX 6618551 intron pigs + chrX_6_6615001 chrX_6615001 RAL-555 2091 chrX 6891977 6892001 chrX 6892054 6892078 9 77 5.0 5.0 5.0 1.5 101 chrX 6891977 intergenic not near genes chrX 6892028 intergenic not near genes chrX 6892078 intergenic not near genes chrX_9_6890001 chrX_6890001 RAL-555 2092 chrX 6897572 6897577 chrX 7243768 7243773 4 346196 5.0 1.5 3.2 1.0 346201 chrX 6897572 intergenic not near genes chrX 7070672 exon CG4607 + chrX 7243773 intron CR44357 - chrX_4_7070001 chrX_7070001 RAL-555 2093 chrX 6901380 6901385 chrX 6901454 6901461 4 76 2.5 3.5 3.0 1.0 81 chrX 6901380 intergenic not near genes chrX 6901420 intergenic not near genes chrX 6901461 intergenic not near genes chrX_4_6900001 chrX_6900001 RAL-555 2094 chrX 7023601 7023631 chrX 7030991 7031021 Tabor 12 7390 5.5 2.0 3.8 2.5 7420 chrX 7023601 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031021 intron CG12541 - chrX_12_7025001 chrX_7025001 RAL-555 2095 chrX 7125244 7125279 chrX 7134403 7134438 roo 11 9159 0.5 0.5 0.5 7.3 9194 chrX 7125244 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134438 intergenic not near genes chrX_11_7125001 chrX_7125001 RAL-555 2096 chrX 7270086 7270109 chrX 7270174 7270197 6 87 3.0 3.5 3.2 1.4 111 chrX 7270086 intron CR44357 - chrX 7270142 intron CR44357 - chrX 7270197 intron CR44357 - chrX_6_7270001 chrX_7270001 RAL-555 2097 chrX 7541894 7541904 chrX 7541985 7541995 4 89 4.5 3.5 4.0 0.8 101 chrX 7541894 intron CG32719 - chrX 7541944 intron CG32719 - chrX 7541995 intron CG32719 - chrX_4_7540001 chrX_7540001 RAL-555 2098 chrX 7702513 7702524 chrX 7702602 7702611 4 88 0.0 6.0 3.0 1.0 98 chrX 7702513 intron CHES-1-like - chrX 7702562 intron CHES-1-like - chrX 7702611 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-555 2099 chrX 7702918 7702937 chrX 7703357 7703376 jockey 6 439 3.0 0.5 1.8 2.1 458 chrX 7702918 intron CHES-1-like - chrX 7703147 intron CHES-1-like - chrX 7703376 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-555 2100 chrX 7737166 7737181 chrX 7737248 7737263 6 82 0.5 1.5 1.0 3.0 97 chrX 7737166 5` UTR Tom40 + chrX 7737214 intron Tom40 + chrX 7737263 intron Tom40 + chrX_6_7735001 chrX_7735001 RAL-555 2101 chrX 7845724 7845759 chrX 7847215 7847250 hopper2 4 1490 5.0 0.5 2.8 1.1 1526 chrX 7845724 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847250 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-555 2102 chrX 7960879 7960908 chrX 7960968 7960997 9 89 1.5 2.5 2.0 3.0 118 chrX 7960879 intron,5` UTR sws -,CR45620 + chrX 7960938 intron sws - chrX 7960997 intron sws - chrX_9_7960001 chrX_7960001 RAL-555 2103 chrX 8031430 8031461 chrX 8035739 8035770 Juan 9 4309 2.5 4.5 3.5 2.0 4340 chrX 8031430 intergenic not near genes chrX 8033600 intergenic not near genes chrX 8035770 3` UTR CG2233 - chrX_9_8030001 chrX_8030001 RAL-555 2104 chrX 8085577 8085602 chrX 8085662 8085688 6 86 1.0 2.0 1.5 2.4 111 chrX 8085577 intron,5` UTR CG2256 -,CR45535 + chrX 8085632 intron,5` UTR CG2256 -,CR45535 + chrX 8085688 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-555 2105 chrX 8232151 8232162 chrX 8232228 8232239 6 77 7.0 6.0 6.5 0.8 88 chrX 8232151 intron sdt + chrX 8232195 intron sdt + chrX 8232239 intron sdt + chrX_6_8230001 chrX_8230001 RAL-555 2106 chrX 8364842 8364879 chrX 8365239 8365276 BS 12 397 3.0 3.0 3.0 3.0 434 chrX 8364842 intron nAChRalpha3 - chrX 8365059 intron nAChRalpha3 - chrX 8365276 intron nAChRalpha3 - chrX_12_8365001 chrX_8365001 RAL-555 2107 chrX 8506030 8506055 chrX 8506108 8506133 4 78 0.5 0.5 0.5 2.7 103 chrX 8506030 intron CG33181 + chrX 8506082 intron CG33181 + chrX 8506133 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-555 2108 chrX 8506543 8506559 chrX 8506751 8506767 4 208 2.0 2.5 2.2 1.2 224 chrX 8506543 intron CG33181 + chrX 8506655 intron CG33181 + chrX 8506767 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-555 2109 chrX 8536758 8536773 chrX 8536834 8536849 8 76 10.0 3.0 6.5 1.1 91 chrX 8536758 intron Nrg + chrX 8536804 intron Nrg + chrX 8536849 intron Nrg + chrX_8_8535001 chrX_8535001 RAL-555 2110 chrX 8922333 8922361 chrX 8922767 8922795 jockey 9 434 4.0 4.0 4.0 1.8 462 chrX 8922333 intron rdgA + chrX 8922564 intron rdgA + chrX 8922795 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-555 2111 chrX 8948770 8948791 chrX 8956280 8956301 roo 5 7510 2.0 3.0 2.5 1.4 7531 chrX 8948770 intron rdgA + chrX 8952536 intron rdgA + chrX 8956301 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-555 2112 chrX 9229908 9229940 chrX 9229987 9230020 7 79 2.0 1.5 1.8 2.5 112 chrX 9229908 intron CG12121 - chrX 9229964 intron CG12121 - chrX 9230020 intron CG12121 - chrX_7_9225001 chrX_9225001 RAL-555 2113 chrX 9508136 9508163 chrX 9509654 9509681 jockey 7 1518 4.5 3.5 4.0 1.4 1545 chrX 9508136 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509681 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-555 2114 chrX 9575791 9575822 chrX 9576115 9576146 mdg3 13 323 2.0 6.5 4.2 2.5 355 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_13_9575001 chrX_9575001 RAL-555 2115 chrX 9758047 9758077 chrX 9758132 9758161 6 85 3.0 0.0 1.5 2.4 114 chrX 9758047 intergenic not near genes chrX 9758104 intergenic not near genes chrX 9758161 intergenic not near genes chrX_6_9755001 chrX_9755001 RAL-555 2116 chrX 9839368 9839380 chrX 9839450 9839462 4 82 0.5 4.0 2.2 1.2 94 chrX 9839368 intron CG32698 + chrX 9839415 intron CG32698 + chrX 9839462 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-555 2117 chrX 8382092 8382094 chrX 9845361 9845361 4 1463268 5.5 12.0 8.8 0.4 1463269 chrX 8382092 intergenic not near genes chrX 9113726 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-555 2118 chrX 9854457 9854480 chrX 9854538 9854561 5 81 3.5 2.0 2.8 1.3 104 chrX 9854457 intergenic not near genes chrX 9854509 intergenic not near genes chrX 9854561 intergenic not near genes chrX_5_9850001 chrX_9850001 RAL-555 2119 chrX 10138218 10138248 chrX 10145722 10145752 412 12 7504 3.5 5.0 4.2 2.3 7534 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141985 intron,intron RhoU +,CR44894 - chrX 10145752 intron,intron RhoU +,CR44894 - chrX_12_10140001 chrX_10140001 RAL-555 2120 chrX 10152973 10153000 chrX 10153382 10153409 13 409 1.5 2.5 2.0 4.3 436 chrX 10152973 intron CR44894 - chrX 10153191 intron CR44894 - chrX 10153409 intron CR44894 - chrX_13_10150001 chrX_10150001 RAL-555 2121 chrX 10216844 10216852 chrX 10216925 10216933 5 81 5.5 8.5 7.0 0.6 89 chrX 10216844 3` UTR l(1)G0230 + chrX 10216888 3` UTR l(1)G0230 + chrX 10216933 3` UTR l(1)G0230 + chrX_5_10215001 chrX_10215001 RAL-555 2122 chrX 10295257 10295281 chrX 10295656 10295680 7 399 2.5 3.0 2.8 1.8 423 chrX 10295257 intron alpha-Man-I - chrX 10295468 intron alpha-Man-I - chrX 10295680 intron alpha-Man-I - chrX_7_10295001 chrX_10295001 RAL-555 2123 chrX 10369108 10369123 chrX 10369275 10369290 7 167 2.5 1.0 1.8 2.5 182 chrX 10369108 intron CG17841 + chrX 10369199 intron CG17841 + chrX 10369290 intron CG17841 + chrX_7_10365001 chrX_10365001 RAL-555 2124 chrX 10525061 10525076 chrX 10532130 10532145 297 6 7069 4.0 1.0 2.5 1.7 7084 chrX 10525061 intron spri - chrX 10528603 intron spri - chrX 10532145 intron spri - chrX_6_10525001 chrX_10525001 RAL-555 2125 chrX 10550856 10550881 chrX 10552323 10552348 hobo 10 1467 4.0 2.5 3.2 2.4 1492 chrX 10550856 intron spri - chrX 10551602 intron spri - chrX 10552348 intron spri - chrX_10_10550001 chrX_10550001 RAL-555 2126 chrX 10686051 10686078 chrX 10691188 10691215 roo 4 5137 4.0 3.5 3.8 0.8 5164 chrX 10686051 intron X11Lbeta + chrX 10688633 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-555 2127 chrX 10719125 10719148 chrX 10719209 10719232 4 84 0.0 3.5 1.8 1.4 107 chrX 10719125 intron CG32676 - chrX 10719178 intron CG32676 - chrX 10719232 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-555 2128 chrX 10734871 10734892 chrX 10736193 10736215 5 1323 2.0 4.0 3.0 1.2 1344 chrX 10734871 intron CG32676 - chrX 10735543 intron CG32676 - chrX 10736215 intron CG32676 - chrX_5_10735001 chrX_10735001 RAL-555 2129 chrX 10772679 10772698 chrX 10772761 10772781 Tirant 5 83 0.5 0.5 0.5 3.3 102 chrX 10772679 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772781 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-555 2130 chrX 10773249 10773260 chrX 10773333 10773344 5 84 0.0 2.0 1.0 2.5 95 chrX 10773249 intron CG15211 + chrX 10773296 intron CG15211 + chrX 10773344 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-555 2131 chrX 11191904 11191923 chrX 11191982 11192001 4 78 3.0 2.0 2.5 1.1 97 chrX 11191904 intergenic not near genes chrX 11191952 intergenic not near genes chrX 11192001 intergenic not near genes chrX_4_11190001 chrX_11190001 RAL-555 2132 chrX 11633419 11633438 chrX 11640473 11640492 297 7 7054 4.0 1.0 2.5 2.0 7073 chrX 11633419 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640492 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-555 2133 chrX 11645109 11645146 chrX 11648279 11648314 NOF 7 3170 1.0 0.5 0.8 3.9 3205 chrX 11645109 intron Ptp10D + chrX 11646712 intron Ptp10D + chrX 11648314 intron Ptp10D + chrX_7_11645001 chrX_11645001 RAL-555 2134 chrX 11659048 11659067 chrX 11659150 11659168 6 101 2.0 1.5 1.8 2.1 120 chrX 11659048 intron Ptp10D + chrX 11659108 intron Ptp10D + chrX 11659168 intron Ptp10D + chrX_6_11655001 chrX_11655001 RAL-555 2135 chrX 11719870 11719902 chrX 11719950 11719982 5 80 2.5 1.5 2.0 1.7 112 chrX 11719870 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719982 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-555 2136 chrX 11804674 11804687 chrX 11804778 11804791 4 104 2.0 2.0 2.0 1.3 117 chrX 11804674 intron Hsc70-3 - chrX 11804732 intron Hsc70-3 - chrX 11804791 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-555 2137 chrX 11922364 11922378 chrX 11922497 11922511 6 132 2.0 3.0 2.5 1.7 147 chrX 11922364 exon Sclp - chrX 11922438 intron Sclp - chrX 11922511 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-555 2138 chrX 11936573 11936586 chrX 11936671 11936685 4 98 0.0 4.0 2.0 1.3 112 chrX 11936573 intron cac - chrX 11936629 intron cac - chrX 11936685 intron cac - chrX_4_11935001 chrX_11935001 RAL-555 2139 chrX 12150549 12150581 chrX 12150631 12150663 13 82 0.0 3.5 1.8 4.6 114 chrX 12150549 intron Ten-a + chrX 12150606 intron Ten-a + chrX 12150663 intron Ten-a + chrX_13_12150001 chrX_12150001 RAL-555 2140 chrX 12202786 12202795 chrX 12202869 12202878 4 82 1.5 3.5 2.5 1.1 92 chrX 12202786 intron Ten-a + chrX 12202832 intron Ten-a + chrX 12202878 intron Ten-a + chrX_4_12200001 chrX_12200001 RAL-555 2141 chrX 12272849 12272869 chrX 12272928 12272947 7 79 0.5 1.5 1.0 3.5 98 chrX 12272849 intron Ten-a + chrX 12272898 intron Ten-a + chrX 12272947 intron Ten-a + chrX_7_12270001 chrX_12270001 RAL-555 2142 chrX 12350772 12350805 chrX 12350853 12350886 13 80 2.5 0.0 1.2 5.9 114 chrX 12350772 intergenic not near genes chrX 12350829 intergenic not near genes chrX 12350886 intergenic not near genes chrX_13_12350001 chrX_12350001 RAL-555 2143 chrX 12363336 12363368 chrX 12363415 12363447 17 79 5.0 3.5 4.2 3.3 111 chrX 12363336 intergenic not near genes chrX 12363392 intergenic not near genes chrX 12363447 intergenic not near genes chrX_17_12360001 chrX_12360001 RAL-555 2144 chrX 12528867 12528879 chrX 12528942 12528955 4 76 2.0 0.0 1.0 2.0 88 chrX 12528867 intron CG43921 - chrX 12528911 intron CG43921 - chrX 12528955 intron CG43921 - chrX_4_12525001 chrX_12525001 RAL-555 2145 chrX 12577604 12577622 chrX 12577715 12577733 7 110 3.5 2.0 2.8 1.8 129 chrX 12577604 intron CG11138 - chrX 12577668 intron CG11138 - chrX 12577733 intron CG11138 - chrX_7_12575001 chrX_12575001 RAL-555 2146 chrX 12715393 12715418 chrX 12715587 12715612 6 194 2.5 4.5 3.5 1.3 219 chrX 12715393 intron Smr - chrX 12715502 intron Smr - chrX 12715612 intron Smr - chrX_6_12715001 chrX_12715001 RAL-555 2147 chrX 12718231 12718264 chrX 12718312 12718343 13 81 2.5 2.0 2.2 4.1 112 chrX 12718231 intron,intron Smr -,CR43963 - chrX 12718287 intron,intron Smr -,CR43963 - chrX 12718343 intron,intron Smr -,CR43963 - chrX_13_12715001 chrX_12715001 RAL-555 2148 chrX 12839920 12839947 chrX 12840244 12840273 5 325 2.5 0.5 1.5 2.0 353 chrX 12839920 intron Pde9 - chrX 12840096 intron Pde9 - chrX 12840273 intron Pde9 - chrX_5_12840001 chrX_12840001 RAL-555 2149 chrX 12930596 12930610 chrX 12937712 12937726 HMS-Beagle 4 7116 6.0 5.5 5.8 0.6 7130 chrX 12930596 intron fne + chrX 12934161 intron fne + chrX 12937726 intron fne + chrX_4_12930001 chrX_12930001 RAL-555 2150 chrX 12953902 12953922 chrX 12954038 12954060 4 138 0.0 0.5 0.2 3.3 158 chrX 12953902 intron hec - chrX 12953981 intron hec - chrX 12954060 intron hec - chrX_4_12950001 chrX_12950001 RAL-555 2151 chrX 13172355 13172378 chrX 13172431 13172454 10 76 2.5 3.0 2.8 2.6 99 chrX 13172355 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172454 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-555 2152 chrX 13269204 13269231 chrX 13269280 13269307 4 76 0.0 0.0 0.0 4.0 103 chrX 13269204 intron HDAC4 - chrX 13269256 intron HDAC4 - chrX 13269307 intron HDAC4 - chrX_4_13265001 chrX_13265001 RAL-555 2153 chrX 13278449 13278475 chrX 13278537 13278563 11 86 1.5 3.0 2.2 3.4 114 chrX 13278449 intron HDAC4 - chrX 13278506 intron HDAC4 - chrX 13278563 intron HDAC4 - chrX_11_13275001 chrX_13275001 RAL-555 2154 chrX 13401483 13401499 chrX 13401835 13401851 jockey 9 352 2.0 0.5 1.2 4.1 368 chrX 13401483 intergenic CG1673 +,CG12725 - chrX 13401667 intergenic CG12725 -,CG1673 + chrX 13401851 3` UTR CG12725 - chrX_9_13400001 chrX_13400001 RAL-555 2155 chrX 13429470 13429487 chrX 13430619 13430636 jockey 7 1149 0.0 4.5 2.2 2.2 1166 chrX 13429470 intergenic not near genes chrX 13430053 intergenic not near genes chrX 13430636 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-555 2156 chrX 13463644 13463672 chrX 13469221 13469248 mdg3 9 5577 2.0 1.0 1.5 3.6 5604 chrX 13463644 intron Neto + chrX 13466446 intron Neto + chrX 13469248 intron Neto + chrX_9_13465001 chrX_13465001 RAL-555 2157 chrX 13795500 13795504 chrX 13798835 13798840 4 3335 13.0 24.0 18.5 0.2 3340 chrX 13795500 intron inaE + chrX 13797170 intron,exon inaE +,CG10996 - chrX 13798840 intron inaE + chrX_4_13795001 chrX_13795001 RAL-555 2158 chrX 13937978 13938007 chrX 13941249 13941278 I-element 7 3271 3.5 2.5 3.0 1.8 3300 chrX 13937978 intron mamo - chrX 13939628 intron mamo - chrX 13941278 intron mamo - chrX_7_13935001 chrX_13935001 RAL-555 2159 chrX 13943276 13943302 chrX 13943367 13943393 9 90 0.0 2.0 1.0 4.5 117 chrX 13943276 intron mamo - chrX 13943334 intron mamo - chrX 13943393 intron mamo - chrX_9_13940001 chrX_13940001 RAL-555 2160 chrX 13975873 13975907 chrX 13975950 13975984 10 77 0.5 1.5 1.0 5.0 111 chrX 13975873 intron mamo - chrX 13975928 intron mamo - chrX 13975984 intron mamo - chrX_10_13975001 chrX_13975001 RAL-555 2161 chrX 14073726 14073744 chrX 14073813 14073831 5 87 2.0 3.5 2.8 1.3 105 chrX 14073726 intergenic not near genes chrX 14073778 intergenic not near genes chrX 14073831 intergenic not near genes chrX_5_14070001 chrX_14070001 RAL-555 2162 chrX 14131493 14131524 chrX 14131574 14131605 12 81 1.5 3.0 2.2 3.8 112 chrX 14131493 intergenic not near genes chrX 14131549 intergenic not near genes chrX 14131605 intergenic not near genes chrX_12_14130001 chrX_14130001 RAL-555 2163 chrX 14139202 14139212 chrX 14139288 14139298 4 86 3.5 5.5 4.5 0.7 96 chrX 14139202 intergenic not near genes chrX 14139250 intergenic not near genes chrX 14139298 intergenic not near genes chrX_4_14135001 chrX_14135001 RAL-555 2164 chrX 14157596 14157619 chrX 14163253 14163276 297 5 5657 1.5 0.5 1.0 2.5 5680 chrX 14157596 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163276 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-555 2165 chrX 14167408 14167438 chrX 14167502 14167533 4 95 1.5 2.0 1.8 1.4 125 chrX 14167408 intergenic not near genes chrX 14167470 intergenic not near genes chrX 14167533 intergenic not near genes chrX_4_14165001 chrX_14165001 RAL-555 2166 chrX 14209463 14209490 chrX 14209554 14209578 6 90 2.0 2.5 2.2 1.9 115 chrX 14209463 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209578 intron,intron l(1)G0007 +,l(1)G0469 - chrX_6_14205001 chrX_14205001 RAL-555 2167 chrX 14321484 14321516 chrX 14321621 14321653 11 137 1.5 2.5 2.0 3.7 169 chrX 14321484 intergenic not near genes chrX 14321568 intergenic not near genes chrX 14321653 intergenic not near genes chrX_11_14320001 chrX_14320001 RAL-555 2168 chrX 14331748 14331777 chrX 14331833 14331860 6 85 1.0 0.5 0.8 3.3 112 chrX 14331748 intron dpr8 + chrX 14331804 intron dpr8 + chrX 14331860 intron dpr8 + chrX_6_14330001 chrX_14330001 RAL-555 2169 chrX 14546089 14546118 chrX 14546279 14546307 9 189 2.5 4.0 3.2 2.1 218 chrX 14546089 intergenic not near genes chrX 14546198 intergenic not near genes chrX 14546307 intergenic not near genes chrX_9_14545001 chrX_14545001 RAL-555 2170 chrX 14628181 14628217 chrX 14628272 14628308 8 91 3.5 3.0 3.2 1.9 127 chrX 14628181 intron NetA - chrX 14628244 intron NetA - chrX 14628308 intron NetA - chrX_8_14625001 chrX_14625001 RAL-555 2171 chrX 14628751 14628780 chrX 14628832 14628861 7 81 1.5 1.5 1.5 2.8 110 chrX 14628751 intron NetA - chrX 14628806 intron NetA - chrX 14628861 intron NetA - chrX_7_14625001 chrX_14625001 RAL-555 2172 chrX 14636459 14636475 chrX 14641900 14641916 I-element 8 5441 3.5 2.5 3.0 2.0 5457 chrX 14636459 intron NetA - chrX 14639188 intron NetA - chrX 14641916 intron NetA - chrX_8_14635001 chrX_14635001 RAL-555 2173 chrX 14778025 14778040 chrX 14782822 14782837 Doc 6 4797 4.5 1.0 2.8 1.6 4812 chrX 14778025 intergenic CG5347 + chrX 14780431 intergenic not near genes chrX 14782837 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-555 2174 chrX 14813736 14813763 chrX 14813814 14813840 12 78 1.0 2.5 1.8 4.3 104 chrX 14813736 intron rut - chrX 14813788 intron rut - chrX 14813840 intron rut - chrX_12_14810001 chrX_14810001 RAL-555 2175 chrX 14917862 14917885 chrX 14917982 14918005 7 121 18.5 13.0 15.8 0.4 143 chrX 14917862 intron,exon Flo2 +,Eo - chrX 14917934 intron,exon Flo2 +,Eo - chrX 14918005 intron,exon Flo2 +,Eo - chrX_7_14915001 chrX_14915001 RAL-555 2176 chrX 14936860 14936892 chrX 14946117 14946149 roo 13 9257 1.0 3.0 2.0 4.3 9289 chrX 14936860 intron pdgy - chrX 14941504 intron pdgy - chrX 14946149 intron pdgy - chrX_13_14940001 chrX_14940001 RAL-555 2177 chrX 14968090 14968101 chrX 14968168 14968180 5 79 2.0 4.5 3.2 1.2 90 chrX 14968090 intron eag + chrX 14968135 intron eag + chrX 14968180 intron eag + chrX_5_14965001 chrX_14965001 RAL-555 2178 chrX 15273708 15273718 chrX 15274873 15274884 1360 4 1166 4.5 2.0 3.2 1.0 1176 chrX 15273708 intergenic not near genes chrX 15274296 intergenic not near genes chrX 15274884 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-555 2179 chrX 15413049 15413085 chrX 15417351 15417387 Juan 13 4301 3.0 3.5 3.2 3.1 4338 chrX 15413049 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-555 2180 chrX 15429234 15429265 chrX 15429316 15429345 15 82 3.0 3.5 3.2 3.6 111 chrX 15429234 intron Cngl - chrX 15429290 intron Cngl - chrX 15429345 intron Cngl - chrX_15_15425001 chrX_15425001 RAL-555 2181 chrX 15519797 15519830 chrX 15519875 15519908 4 78 2.0 1.5 1.8 1.4 111 chrX 15519797 intron Ac13E - chrX 15519852 intron Ac13E - chrX 15519908 intron Ac13E - chrX_4_15515001 chrX_15515001 RAL-555 2182 chrX 15529285 15529295 chrX 15529365 15529376 4 80 1.0 0.5 0.8 2.2 91 chrX 15529285 intron Ac13E - chrX 15529330 intron Ac13E - chrX 15529376 intron Ac13E - chrX_4_15525001 chrX_15525001 RAL-555 2183 chrX 15666226 15666227 chrX 15666302 15666304 4 77 6.5 8.0 7.2 0.5 78 chrX 15666226 intergenic not near genes chrX 15666265 intergenic not near genes chrX 15666304 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-555 2184 chrX 15678048 15678067 chrX 15678125 15678144 6 77 3.5 6.0 4.8 1.0 96 chrX 15678048 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678144 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-555 2185 chrX 15777644 15777673 chrX 15783372 15783401 10 5728 31.0 21.0 26.0 0.4 5757 chrX 15777644 exon CG43672 + chrX 15780522 exon Efhc1.1 - chrX 15783401 exon Efhc1.1 - chrX_10_15780001 chrX_15780001 RAL-555 2186 chrX 16437618 16437630 chrX 16437705 16437714 5 86 1.0 3.5 2.2 1.6 96 chrX 16437618 3` UTR,3` UTR hang +,CG9947 - chrX 16437666 3` UTR,3` UTR hang +,CG9947 - chrX 16437714 3` UTR,3` UTR hang +,CG9947 - chrX_5_16435001 chrX_16435001 RAL-555 2187 chrX 16492653 16492678 chrX 16498230 16498255 mdg3 7 5577 4.5 5.0 4.8 1.2 5602 chrX 16492653 intron para - chrX 16495454 intron para - chrX 16498255 intron para - chrX_7_16495001 chrX_16495001 RAL-555 2188 chrX 16515051 16515060 chrX 16515150 16515157 5 99 2.5 7.5 5.0 0.8 106 chrX 16515051 intron para - chrX 16515104 intron para - chrX 16515157 intron para - chrX_5_16515001 chrX_16515001 RAL-555 2189 chrX 16529426 16529441 chrX 16529536 16529552 6 110 0.0 5.0 2.5 1.7 126 chrX 16529426 intron para - chrX 16529489 intron para - chrX 16529552 intron para - chrX_6_16525001 chrX_16525001 RAL-555 2190 chrX 16623490 16623500 chrX 16623575 16623586 4 86 2.5 0.0 1.2 1.8 96 chrX 16623490 intergenic not near genes chrX 16623538 intergenic Rok - chrX 16623586 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-555 2191 chrX 16648125 16648134 chrX 16648210 16648219 8 85 4.0 9.0 6.5 1.1 94 chrX 16648125 3` UTR mthl1 + chrX 16648172 3` UTR mthl1 + chrX 16648219 3` UTR mthl1 + chrX_8_16645001 chrX_16645001 RAL-555 2192 chrX 16650929 16650952 chrX 16651005 16651029 5 77 2.5 0.0 1.2 2.3 100 chrX 16650929 intergenic CG32573 +,CG42512 + chrX 16650979 intergenic CG32573 +,CG42512 + chrX 16651029 intergenic CG32573 +,CG42512 + chrX_5_16650001 chrX_16650001 RAL-555 2193 chrX 16936014 16936035 chrX 16936431 16936453 jockey 7 418 0.0 2.5 1.2 3.2 439 chrX 16936014 intron CG4928 + chrX 16936234 intron CG4928 + chrX 16936453 intron CG4928 + chrX_7_16935001 chrX_16935001 RAL-555 2194 chrX 16951330 16951344 chrX 16951410 16951423 6 79 3.5 4.5 4.0 1.2 93 chrX 16951330 exon RhoGAP15B + chrX 16951376 exon RhoGAP15B + chrX 16951423 exon RhoGAP15B + chrX_6_16950001 chrX_16950001 RAL-555 2195 chrX 16983076 16983077 chrX 19404963 19404964 5 2421887 12.0 14.5 13.2 0.4 2421888 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_5_18190001 chrX_18190001 RAL-555 2196 chrX 17011734 17012000 chrX 17011876 17012083 13 102 1.0 4.5 2.8 3.4 349 chrX 17011734 intron CG45002 - chrX 17011908 intron CG45002 - chrX 17012083 intron CG45002 - chrX_13_17010001 chrX_17010001 RAL-555 2197 chrX 17088188 17088197 chrX 17088781 17088790 4 593 0.0 1.5 0.8 2.2 602 chrX 17088188 intergenic not near genes chrX 17088489 intergenic not near genes chrX 17088790 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-555 2198 chrX 17149573 17149579 chrX 17154239 17154246 4 4666 16.0 4.0 10.0 0.4 4673 chrX 17149573 intron CG5010 + chrX 17151910 exon xmas-1 - chrX 17154246 intron,3` UTR xmas-1 -,xmas-2 - chrX_4_17150001 chrX_17150001 RAL-555 2199 chrX 17195215 17195232 chrX 17200301 17200318 flea 7 5086 2.5 3.5 3.0 1.8 5103 chrX 17195215 3` UTR baz + chrX 17197766 3` UTR baz + chrX 17200318 3` UTR baz + chrX_7_17195001 chrX_17195001 RAL-555 2200 chrX 17262176 17262196 chrX 17262262 17262282 8 86 3.5 4.0 3.8 1.7 106 chrX 17262176 intron f + chrX 17262229 intron f + chrX 17262282 intron f + chrX_8_17260001 chrX_17260001 RAL-555 2201 chrX 17282874 17282906 chrX 17282952 17282984 17 78 3.5 0.0 1.8 6.1 110 chrX 17282874 intron CG5445 + chrX 17282929 5` UTR CG5445 + chrX 17282984 intron CG5445 + chrX_17_17280001 chrX_17280001 RAL-555 2202 chrX 17290067 17290092 chrX 17290143 17290168 5 76 2.0 2.5 2.2 1.6 101 chrX 17290067 intron,intron CG5445 +,Fim - chrX 17290118 intron,intron CG5445 +,Fim - chrX 17290168 intron,intron CG5445 +,Fim - chrX_5_17290001 chrX_17290001 RAL-555 2203 chrX 17316368 17316392 chrX 17316452 17316476 7 84 4.0 0.0 2.0 2.3 108 chrX 17316368 intron B-H2 + chrX 17316422 intron B-H2 + chrX 17316476 intron B-H2 + chrX_7_17315001 chrX_17315001 RAL-555 2204 chrX 17352591 17352616 chrX 17352694 17352719 9 103 0.0 1.5 0.8 5.0 128 chrX 17352591 intergenic not near genes chrX 17352655 intergenic not near genes chrX 17352719 intergenic not near genes chrX_9_17350001 chrX_17350001 RAL-555 2205 chrX 17476462 17476490 chrX 17476539 17476561 4 74 2.0 0.0 1.0 2.0 99 chrX 17476462 intron CG43658 - chrX 17476512 intron CG43658 - chrX 17476561 intron CG43658 - chrX_4_17475001 chrX_17475001 RAL-555 2206 chrX 17502362 17502371 chrX 17502442 17502451 5 80 2.5 3.5 3.0 1.2 89 chrX 17502362 intron CG43658 - chrX 17502406 intron CG43658 - chrX 17502451 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-555 2207 chrX 17556944 17556954 chrX 17557443 17557453 mdg1 7 499 4.0 5.5 4.8 1.2 509 chrX 17556944 intron CG43658 - chrX 17557198 intron CG43658 - chrX 17557453 intron CG43658 - chrX_7_17555001 chrX_17555001 RAL-555 2208 chrX 17680895 17680923 chrX 17680972 17681000 11 77 2.0 4.5 3.2 2.6 105 chrX 17680895 intron chas - chrX 17680948 intron chas - chrX 17681000 intron chas - chrX_11_17680001 chrX_17680001 RAL-555 2209 chrX 18177026 18177059 chrX 18177119 18177152 4 92 1.5 1.0 1.2 1.8 126 chrX 18177026 intergenic not near genes chrX 18177089 intergenic not near genes chrX 18177152 intergenic Frq2 + chrX_4_18175001 chrX_18175001 RAL-555 2210 chrX 18194071 18194100 chrX 18194605 18194635 BS 14 535 2.5 2.0 2.2 4.4 564 chrX 18194071 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194635 intron Frq2 + chrX_14_18190001 chrX_18190001 RAL-555 2211 chrX 18427380 18427409 chrX 18427791 18427820 7 411 2.5 1.5 2.0 2.3 440 chrX 18427380 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427820 intergenic not near genes chrX_7_18425001 chrX_18425001 RAL-555 2212 chrX 18429493 18429523 chrX 18434804 18434834 Transpac 7 5311 1.5 3.0 2.2 2.2 5341 chrX 18429493 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434834 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-555 2213 chrX 18467224 18467251 chrX 18467388 18467415 9 164 5.0 3.5 4.2 1.7 191 chrX 18467224 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467415 intron CG32547 - chrX_9_18465001 chrX_18465001 RAL-555 2214 chrX 18558783 18558805 chrX 18558865 18558887 10 81 3.0 5.0 4.0 2.0 104 chrX 18558783 intron Bx + chrX 18558835 intron Bx + chrX 18558887 intron Bx + chrX_10_18555001 chrX_18555001 RAL-555 2215 chrX 18645015 18645049 chrX 18645113 18645147 10 98 1.5 1.5 1.5 4.0 132 chrX 18645015 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645147 intron Rip11 - chrX_10_18645001 chrX_18645001 RAL-555 2216 chrX 18698849 18698873 chrX 18698966 18698989 5 116 2.5 2.5 2.5 1.4 140 chrX 18698849 intergenic not near genes chrX 18698919 intergenic not near genes chrX 18698989 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-555 2217 chrX 18832262 18832288 chrX 18832354 18832380 6 92 2.0 0.0 1.0 3.0 118 chrX 18832262 intergenic CG7101 +,Pvf1 + chrX 18832321 intergenic CG7101 +,Pvf1 + chrX 18832380 intergenic CG7101 +,Pvf1 + chrX_6_18830001 chrX_18830001 RAL-555 2218 chrX 18947501 18947534 chrX 18947594 18947626 11 92 4.0 2.5 3.2 2.6 125 chrX 18947501 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947626 intron CG43759 + chrX_11_18945001 chrX_18945001 RAL-555 2219 chrX 19014363 19014393 chrX 19014442 19014472 9 79 1.5 3.0 2.2 2.8 109 chrX 19014363 intron CG43759 + chrX 19014418 intron CG43759 + chrX 19014472 intron CG43759 + chrX_9_19010001 chrX_19010001 RAL-555 2220 chrX 19060412 19060435 chrX 19065196 19065219 Doc 7 4784 1.5 5.0 3.2 1.7 4807 chrX 19060412 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065219 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-555 2221 chrX 19080326 19080358 chrX 19080432 19080464 6 106 1.5 2.0 1.8 2.1 138 chrX 19080326 intergenic not near genes chrX 19080395 intergenic not near genes chrX 19080464 intergenic not near genes chrX_6_19080001 chrX_19080001 RAL-555 2222 chrX 19098772 19098782 chrX 19098850 19098860 8 78 3.0 5.0 4.0 1.6 88 chrX 19098772 intergenic not near genes chrX 19098816 intergenic not near genes chrX 19098860 intergenic not near genes chrX_8_19095001 chrX_19095001 RAL-555 2223 chrX 19109112 19109137 chrX 19109296 19109321 11 183 0.0 1.0 0.5 7.3 209 chrX 19109112 intergenic not near genes chrX 19109216 intergenic not near genes chrX 19109321 intergenic not near genes chrX_11_19105001 chrX_19105001 RAL-555 2224 chrX 19131969 19132000 chrX 19132052 19132083 13 83 3.0 3.0 3.0 3.2 114 chrX 19131969 intergenic not near genes chrX 19132026 intergenic not near genes chrX 19132083 intergenic not near genes chrX_13_19130001 chrX_19130001 RAL-555 2225 chrX 19136553 19136580 chrX 19143473 19143499 412 5 6920 2.0 1.5 1.8 1.8 6946 chrX 19136553 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143499 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-555 2226 chrX 19176209 19176240 chrX 19176291 19176324 15 84 5.0 2.5 3.8 3.1 115 chrX 19176209 3` UTR CG7556 - chrX 19176266 3` UTR CG7556 - chrX 19176324 3` UTR CG7556 - chrX_15_19175001 chrX_19175001 RAL-555 2227 chrX 13057298 13057300 chrX 19242812 19242814 13 6185514 8.0 12.5 10.2 1.2 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_13_16150001 chrX_16150001 RAL-555 2228 chrX 19281002 19281023 chrX 19281128 19281152 7 129 0.0 2.5 1.2 3.2 150 chrX 19281002 intergenic CG8034 - chrX 19281077 intergenic CG8034 - chrX 19281152 intergenic CG8034 - chrX_7_19280001 chrX_19280001 RAL-555 2229 chrX 19320232 19320252 chrX 19320320 19320340 4 88 1.5 5.5 3.5 0.9 108 chrX 19320232 intron out - chrX 19320286 intron out - chrX 19320340 intron out - chrX_4_19320001 chrX_19320001 RAL-555 2230 chrX 19339753 19339762 chrX 19339829 19339838 4 76 2.0 3.5 2.8 1.1 85 chrX 19339753 intron nAChRalpha7 - chrX 19339796 intron nAChRalpha7 - chrX 19339838 intron nAChRalpha7 - chrX_4_19335001 chrX_19335001 RAL-555 2231 chrX 19356994 19357013 chrX 19358435 19358454 NOF 6 1441 2.5 0.5 1.5 2.4 1460 chrX 19356994 intron kek5 + chrX 19357724 intron kek5 + chrX 19358454 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-555 2232 chrX 19380163 19380188 chrX 19380404 19380429 pogo 9 241 3.5 4.0 3.8 1.9 266 chrX 19380163 intron kek5 + chrX 19380296 intron kek5 + chrX 19380429 intron kek5 + chrX_9_19380001 chrX_19380001 RAL-555 2233 chrX 19472124 19472153 chrX 19472694 19472723 jockey 7 570 0.5 3.5 2.0 2.3 599 chrX 19472124 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472723 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-555 2234 chrX 19528430 19528466 chrX 19528520 19528556 19 90 2.5 2.5 2.5 5.4 126 chrX 19528430 intron CoRest + chrX 19528493 intron CoRest + chrX 19528556 intron CoRest + chrX_19_19525001 chrX_19525001 RAL-555 2235 chrX 19662034 19662056 chrX 19662257 19662279 5 223 2.0 2.5 2.2 1.6 245 chrX 19662034 intron CG14223 - chrX 19662156 intron CG14223 - chrX 19662279 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-555 2236 chrX 19710073 19710095 chrX 19711859 19711881 S-element 5 1785 3.5 2.5 3.0 1.2 1808 chrX 19710073 intron meso18E - chrX 19710977 intron meso18E - chrX 19711881 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-555 2237 chrX 19983864 19983886 chrX 19983944 19983966 7 80 0.5 2.0 1.2 3.2 102 chrX 19983864 intergenic not near genes chrX 19983915 intergenic not near genes chrX 19983966 intergenic not near genes chrX_7_19980001 chrX_19980001 RAL-555 2238 chrX 19992417 19992435 chrX 19992492 19992511 4 76 4.0 6.5 5.2 0.6 94 chrX 19992417 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992511 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-555 2239 chrX 20041531 20041567 chrX 20041611 20041647 8 80 1.5 1.5 1.5 3.2 116 chrX 20041531 intron Dop2R - chrX 20041589 intron Dop2R - chrX 20041647 intron Dop2R - chrX_8_20040001 chrX_20040001 RAL-555 2240 chrX 20069262 20069296 chrX 20069395 20069429 10 132 1.0 1.5 1.2 4.5 167 chrX 20069262 intergenic not near genes chrX 20069346 intergenic not near genes chrX 20069429 intergenic not near genes chrX_10_20065001 chrX_20065001 RAL-555 2241 chrX 20127843 20127869 chrX 20127927 20127953 10 84 4.0 4.5 4.2 1.9 110 chrX 20127843 intergenic not near genes chrX 20127898 intergenic not near genes chrX 20127953 intergenic not near genes chrX_10_20125001 chrX_20125001 RAL-555 2242 chrX 20257751 20257777 chrX 20257837 20257863 5 86 1.0 0.5 0.8 2.8 112 chrX 20257751 intergenic not near genes chrX 20257807 intergenic not near genes chrX 20257863 intergenic not near genes chrX_5_20255001 chrX_20255001 RAL-555 2243 chrX 20279754 20279774 chrX 20279835 20279855 4 81 2.0 1.0 1.5 1.6 101 chrX 20279754 intergenic not near genes chrX 20279804 intergenic not near genes chrX 20279855 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-555 2244 chrX 20312884 20312910 chrX 20312961 20312988 13 78 3.5 1.0 2.2 4.1 104 chrX 20312884 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20312988 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-555 2245 chrX 20369320 20369337 chrX 20369404 20369421 7 84 1.0 3.5 2.2 2.2 101 chrX 20369320 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369421 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-555 2246 chrX 20377325 20377348 chrX 20378791 20378815 hobo 11 1467 3.5 2.0 2.8 2.9 1490 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378815 intergenic not near genes chrX_11_20375001 chrX_20375001 RAL-555 2247 chrX 20437366 20437385 chrX 20437936 20437960 11 574 4.5 2.5 3.5 2.4 594 chrX 20437366 intron CG1695 + chrX 20437663 intron CG1695 + chrX 20437960 intron CG1695 + chrX_11_20435001 chrX_20435001 RAL-555 2248 chrX 20468016 20468037 chrX 20468105 20468126 5 89 1.0 0.0 0.5 3.3 110 chrX 20468016 intron GstT3 + chrX 20468071 intron GstT3 + chrX 20468126 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-555 2249 chrX 20528599 20528620 chrX 20528947 20528967 7 348 4.5 3.0 3.8 1.5 368 chrX 20528599 intergenic not near genes chrX 20528783 intergenic not near genes chrX 20528967 intergenic not near genes chrX_7_20525001 chrX_20525001 RAL-555 2250 chrX 20531770 20531795 chrX 20531868 20531894 5 99 2.0 3.5 2.8 1.3 124 chrX 20531770 intergenic not near genes chrX 20531832 intergenic not near genes chrX 20531894 intergenic not near genes chrX_5_20530001 chrX_20530001 RAL-555 2251 chrX 20546554 20546566 chrX 20546720 20546732 6 166 0.0 1.5 0.8 3.3 178 chrX 20546554 intron RunxB + chrX 20546643 intron RunxB + chrX 20546732 intron RunxB + chrX_6_20545001 chrX_20545001 RAL-555 2252 chrX 20570781 20570795 chrX 20570866 20570879 5 84 1.0 5.5 3.2 1.2 98 chrX 20570781 intergenic not near genes chrX 20570830 intergenic not near genes chrX 20570879 intergenic not near genes chrX_5_20570001 chrX_20570001 RAL-555 2253 chrX 20575160 20575188 chrX 20575238 20575267 10 79 2.5 4.0 3.2 2.4 107 chrX 20575160 intergenic CG42580 + chrX 20575214 intergenic not near genes chrX 20575267 intergenic not near genes chrX_10_20575001 chrX_20575001 RAL-555 2254 chrX 20578082 20578110 chrX 20578161 20578189 5 79 0.5 2.5 1.5 2.0 107 chrX 20578082 intergenic not near genes chrX 20578136 intergenic not near genes chrX 20578189 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-555 2255 chrX 20710422 20710433 chrX 20710500 20710511 4 78 0.0 2.0 1.0 2.0 89 chrX 20710422 intergenic not near genes chrX 20710466 intergenic not near genes chrX 20710511 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-555 2256 chrX 20780227 20780238 chrX 20780452 20780463 5 225 1.0 1.5 1.2 2.3 236 chrX 20780227 intron,3` UTR shakB -,CG32507 - chrX 20780345 intron,3` UTR shakB -,CG32507 - chrX 20780463 intron,3` UTR shakB -,CG32507 - chrX_5_20780001 chrX_20780001 RAL-555 2257 chrX 20784008 20784038 chrX 20784120 20784150 11 112 0.0 2.5 1.2 5.0 142 chrX 20784008 intron shakB - chrX 20784079 intron shakB - chrX 20784150 intron shakB - chrX_11_20780001 chrX_20780001 RAL-555 2258 chrX 20836734 20836759 chrX 20844336 20844360 roo 8 7601 1.5 2.5 2.0 2.7 7626 chrX 20836734 intron shakB - chrX 20840547 intron shakB - chrX 20844360 intron shakB - chrX_8_20840001 chrX_20840001 RAL-555 2259 chrX 20897939 20897957 chrX 20898029 20898047 6 90 2.0 0.0 1.0 3.0 108 chrX 20897939 intron shakB - chrX 20897993 intron shakB - chrX 20898047 intron shakB - chrX_6_20895001 chrX_20895001 RAL-555 2260 chrX 20940719 20940751 chrX 20942187 20942219 hobo 12 1469 2.5 3.5 3.0 3.0 1500 chrX 20940719 intergenic not near genes chrX 20941469 intergenic not near genes chrX 20942219 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-555 2261 chrX 20956992 20957012 chrX 20962434 20962454 I-element 7 5442 0.0 4.0 2.0 2.3 5462 chrX 20956992 intergenic not near genes chrX 20959723 intergenic not near genes chrX 20962454 intergenic Ser6 - chrX_7_20955001 chrX_20955001 RAL-555 2262 chrX 21008658 21008691 chrX 21008745 21008778 5 87 0.5 2.0 1.2 2.3 120 chrX 21008658 intergenic not near genes chrX 21008718 intergenic not near genes chrX 21008778 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-555 2263 chrX 21009831 21009844 chrX 21009939 21009952 6 108 0.5 2.0 1.2 2.7 121 chrX 21009831 intergenic not near genes chrX 21009892 intergenic not near genes chrX 21009952 intergenic not near genes chrX_6_21005001 chrX_21005001 RAL-555 2264 chrX 21022254 21022267 chrX 21022423 21022436 5 169 14.0 4.5 9.2 0.5 182 chrX 21022254 intergenic not near genes chrX 21022345 intergenic not near genes chrX 21022436 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-555 2265 chrX 21022258 21022278 chrX 21022340 21022360 4 82 13.0 9.5 11.2 0.3 102 chrX 21022258 intergenic not near genes chrX 21022309 intergenic not near genes chrX 21022360 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-555 2266 chrX 21042567 21042592 chrX 21045352 21045378 9 2785 21.5 19.0 20.2 0.4 2811 chrX 21042567 exon Mgstl + chrX 21043972 exon,3` UTR Mgstl +,CR44431 - chrX 21045378 intron Cbs + chrX_9_21040001 chrX_21040001 RAL-555 2267 chrX 21086128 21086164 chrX 21087157 21087193 jockey 8 1029 2.5 2.0 2.2 2.5 1065 chrX 21086128 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087193 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-555 2268 chrX 21088047 21088074 chrX 21088179 21088206 6 132 1.0 1.5 1.2 2.7 159 chrX 21088047 intergenic not near genes chrX 21088126 intergenic not near genes chrX 21088206 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-555 2269 chrX 21253284 21253299 chrX 21253361 21253376 13 77 4.5 6.0 5.2 2.1 92 chrX 21253284 intron CG32521 - chrX 21253330 intron CG32521 - chrX 21253376 intron CG32521 - chrX_13_21250001 chrX_21250001 RAL-555 2270 chrX 21254634 21254642 chrX 21254723 21254731 5 89 3.5 1.0 2.2 1.6 97 chrX 21254634 intron CG32521 - chrX 21254682 intron CG32521 - chrX 21254731 intron CG32521 - chrX_5_21250001 chrX_21250001 RAL-555 2271 chrX 21255493 21255510 chrX 21255619 21255635 7 126 4.0 0.0 2.0 2.3 142 chrX 21255493 intron CG32521 - chrX 21255564 intron CG32521 - chrX 21255635 intron CG32521 - chrX_7_21255001 chrX_21255001 RAL-555 2272 chrX 21268068 21268087 chrX 21268149 21268167 7 81 2.5 0.5 1.5 2.8 99 chrX 21268068 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268167 intron CG32521 - chrX_7_21265001 chrX_21265001 RAL-555 2273 chrX 21328123 21328148 chrX 21328234 21328259 7 111 2.0 3.0 2.5 2.0 136 chrX 21328123 3` UTR CG1486 + chrX 21328191 intergenic CG1486 +,tty - chrX 21328259 intergenic CG1486 +,tty - chrX_7_21325001 chrX_21325001 RAL-555 2274 chrX 21419209 21419242 chrX 21419294 21419327 10 85 1.0 1.0 1.0 5.0 118 chrX 21419209 intergenic not near genes chrX 21419268 intergenic not near genes chrX 21419327 intergenic not near genes chrX_10_21415001 chrX_21415001 RAL-555 2275 chrX 21428338 21428360 chrX 21428528 21428549 5 189 2.5 1.0 1.8 1.8 211 chrX 21428338 intron CG42343 - chrX 21428444 intron CG42343 - chrX 21428549 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-555 2276 chrX 21455213 21455245 chrX 21455392 21455432 5 181 0.5 0.0 0.2 4.2 219 chrX 21455213 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455432 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-555 2277 chrX 21458690 21458726 chrX 21464126 21464162 Ivk 7 5436 1.5 3.0 2.2 2.2 5472 chrX 21458690 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464162 intergenic not near genes chrX_7_21460001 chrX_21460001 RAL-555 2278 chrX 21467017 21467044 chrX 21467101 21467128 7 84 2.0 3.0 2.5 2.0 111 chrX 21467017 intergenic CR45507 - chrX 21467072 intergenic CR45507 - chrX 21467128 3` UTR CR45507 - chrX_7_21465001 chrX_21465001 RAL-555 2279 chrX 21474403 21474435 chrX 21474769 21474769 1731 13 363 0.5 1.0 0.8 7.2 366 chrX 21474403 intergenic not near genes chrX 21474586 intergenic not near genes chrX 21474769 intergenic not near genes chrX_13_21470001 chrX_21470001 RAL-555 2280 chrX 21624910 21624926 chrX 21625000 21625016 8 90 3.5 1.0 2.2 2.5 106 chrX 21624910 3` UTR DIP1 - chrX 21624963 3` UTR DIP1 - chrX 21625016 3` UTR DIP1 - chrX_8_21620001 chrX_21620001 RAL-555 2281 chrX 21668258 21668288 chrX 21668343 21668373 10 85 21.0 20.0 20.5 0.5 115 chrX 21668258 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668373 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-555 2282 chrX 22448270 22448293 chrX 22448409 22448432 7 139 0.5 1.0 0.8 3.9 162 chrX 22448270 intron CG14615 - chrX 22448351 intron CG14615 - chrX 22448432 intron CG14615 - chrX_7_22445001 chrX_22445001 RAL-555 2283 chrX 22564561 22564577 chrX 22575133 22575149 jockey 6 10572 7.5 5.5 6.5 0.8 10588 chrX 22564561 intergenic not near genes chrX 22569855 intergenic not near genes chrX 22575149 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-555 2284 chrX 22660566 22660581 chrX 22660650 22660664 6 84 7.5 0.0 3.8 1.2 98 chrX 22660566 intron CR44997 + chrX 22660615 intron CR44997 + chrX 22660664 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-555 2285 chrX 22661974 22661990 chrX 22662073 22662089 5 99 0.0 0.0 0.0 5.0 115 chrX 22661974 intron CR44997 + chrX 22662032 intron CR44997 + chrX 22662089 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-555 2286 chrX 22697496 22697521 chrX 22701793 22701818 Juan 6 4297 7.5 3.5 5.5 0.9 4322 chrX 22697496 intron CR44997 + chrX 22699657 intron CR44997 + chrX 22701818 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-555 2287 chrX 22771519 22771537 chrX 22774810 22774828 297 5 3290 2.0 2.5 2.2 1.6 3309 chrX 22771519 intron CR44997 + chrX 22773174 intron CR44997 + chrX 22774828 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-555 2288 chrX 22784080 22784104 chrX 22784163 22784187 4 83 3.5 1.0 2.2 1.2 107 chrX 22784080 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784187 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-555 2289 chrX 22967393 22967514 chrX 23154544 23154691 diver 8 187157 2.5 9.0 5.8 1.2 187298 chrX 22967393 intergenic not near genes chrX 23061042 intergenic not near genes chrX 23154691 intergenic not near genes chrX_8_23060001 chrX_23060001 RAL-555 2290 chrX 22987112 22987132 chrX 22989770 22989789 Burdock 4 2658 1.0 2.0 1.5 1.6 2677 chrX 22987112 intron,intron stnA -,stnB - chrX 22988450 intron,intron stnA -,stnB - chrX 22989789 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-555 2291 chrX 22992398 22992425 chrX 22992527 22992556 9 130 1.0 1.0 1.0 4.5 158 chrX 22992398 intron,intron stnA -,stnB - chrX 22992477 intron,intron stnA -,stnB - chrX 22992556 intron,intron stnA -,stnB - chrX_9_22990001 chrX_22990001 RAL-555 2292 chrX 22996318 22996341 chrX 23003550 23003573 roo 7 7232 3.5 4.0 3.8 1.5 7255 chrX 22996318 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-555 2293 chrX 23036384 23036413 chrX 23037785 23037814 pogo 11 1401 2.5 1.0 1.8 3.9 1430 chrX 23036384 intron CG12061 + chrX 23037099 intron CG12061 + chrX 23037814 intron CG12061 + chrX_11_23035001 chrX_23035001 RAL-555 2294 chrY 975791 975818 chrY 975871 975894 6 83 81.0 102.0 91.5 0.1 103 chrY 975791 intergenic not near genes chrY 975842 intergenic not near genes chrY 975894 intergenic not near genes chrY_6_975001 chrY_975001 RAL-555