SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47459	47485	chr2L	52564	52590	jockey	16	5104	6.0	4.5	5.2	2.6	5131	chr2L	47459	intron	Cda5 -	chr2L	50024	intron	Cda5 -	chr2L	52590	intron	Cda5 -	chr2L_16_50001	chr2L_50001	RAL-517
10	chr2L	347885	347910	chr2L	355385	355410	blood	7	7500	2.0	1.0	1.5	2.8	7525	chr2L	347885	3` UTR	Plc21C +	chr2L	351648	intron	Plc21C +	chr2L	355410	3` UTR	Plc21C +	chr2L_7_350001	chr2L_350001	RAL-517
15	chr2L	686922	686941	chr2L	695961	695980	roo	7	9039	2.5	1.0	1.8	2.5	9058	chr2L	686922	intron	ds -	chr2L	691451	intron	ds -	chr2L	695980	intron	ds -	chr2L_7_690001	chr2L_690001	RAL-517
18	chr2L	770465	770490	chr2L	772245	772271	Bari1	11	1778	3.5	3.5	3.5	2.4	1806	chr2L	770465	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772271	intergenic	CR44614 +	chr2L_11_770001	chr2L_770001	RAL-517
22	chr2L	976895	976913	chr2L	984531	984549	roo	5	7636	1.5	4.0	2.8	1.3	7654	chr2L	976895	intergenic	not near genes	chr2L	980722	intergenic	not near genes	chr2L	984549	intergenic	not near genes	chr2L_5_980001	chr2L_980001	RAL-517
25	chr2L	1220130	1220162	chr2L	1227596	1227628	blood	11	7466	3.0	2.5	2.8	2.9	7498	chr2L	1220130	intron	CG42329 +	chr2L	1223879	intron	CG42329 +	chr2L	1227628	intron	CG42329 +	chr2L_11_1220001	chr2L_1220001	RAL-517
27	chr2L	1301757	1301782	chr2L	1302293	1302321	gypsy	8	538	0.0	4.0	2.0	2.7	564	chr2L	1301757	intergenic	not near genes	chr2L	1302039	intergenic	not near genes	chr2L	1302321	intergenic	not near genes	chr2L_8_1300001	chr2L_1300001	RAL-517
29	chr2L	1570684	1570719	chr2L	1573556	1573591	F-element	10	2872	2.5	3.5	3.0	2.5	2907	chr2L	1570684	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573591	intron	haf +	chr2L_10_1570001	chr2L_1570001	RAL-517
32	chr2L	1678980	1679001	chr2L	1686445	1686466	blood	5	7465	0.5	2.0	1.2	2.3	7486	chr2L	1678980	intron	chinmo +	chr2L	1682723	intron	chinmo +	chr2L	1686466	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-517
33	chr2L	1711357	1711382	chr2L	1711681	1711704	mdg3	8	323	4.5	4.5	4.5	1.5	347	chr2L	1711357	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711530	3` UTR	frtz -	chr2L	1711704	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-517
42	chr2L	2100376	2100400	chr2L	2109527	2109551	roo	8	9151	3.5	3.0	3.2	1.9	9175	chr2L	2100376	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	RAL-517
43	chr2L	2112117	2112142	chr2L	2119777	2119804	opus	5	7658	1.5	4.0	2.8	1.3	7687	chr2L	2112117	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119804	intergenic	not near genes	chr2L_5_2115001	chr2L_2115001	RAL-517
47	chr2L	2294049	2294065	chr2L	2299251	2299263	copia	6	5200	1.5	3.5	2.5	1.7	5214	chr2L	2294049	intergenic	not near genes	chr2L	2296656	intergenic	not near genes	chr2L	2299263	intergenic	not near genes	chr2L_6_2295001	chr2L_2295001	RAL-517
55	chr2L	2661198	2661233	chr2L	2663036	2663070	I-element	9	1836	1.0	3.0	2.0	3.0	1872	chr2L	2661198	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_9_2660001	chr2L_2660001	RAL-517
58	chr2L	2772611	2772628	chr2L	2779195	2779212	297	5	6583	2.5	3.0	2.8	1.3	6601	chr2L	2772611	3` UTR	Syt1 -	chr2L	2775912	intron	Syt1 -	chr2L	2779212	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-517
61	chr2L	3073029	3073063	chr2L	3078232	3078266	copia	13	5201	3.5	3.5	3.5	2.9	5237	chr2L	3073029	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078266	intron	toc -	chr2L_13_3075001	chr2L_3075001	RAL-517
64	chr2L	3251497	3251526	chr2L	3259062	3259091	springer	4	7565	1.5	2.0	1.8	1.4	7594	chr2L	3251497	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259091	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-517
68	chr2L	3388601	3388628	chr2L	3388842	3388869	pogo	7	241	1.5	1.0	1.2	3.2	268	chr2L	3388601	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388869	intergenic	CG42460 -,CR44791 +	chr2L_7_3385001	chr2L_3385001	RAL-517
72	chr2L	3649787	3649813	chr2L	3654990	3655016	copia	7	5202	4.0	2.5	3.2	1.7	5229	chr2L	3649787	intron	for -	chr2L	3652402	intron	for -	chr2L	3655016	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-517
78	chr2L	4066042	4066064	chr2L	4068867	4068889	Juan	7	2825	2.5	2.0	2.2	2.2	2847	chr2L	4066042	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068889	intron	ed +	chr2L_7_4065001	chr2L_4065001	RAL-517
82	chr2L	4181295	4181305	chr2L	4183926	4183936	Burdock	4	2630	2.0	5.5	3.8	0.8	2641	chr2L	4181295	intergenic	not near genes	chr2L	4182616	intergenic	not near genes	chr2L	4183936	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-517
89	chr2L	4601703	4601736	chr2L	4609144	4609176	mdg1	17	7441	1.5	5.0	3.2	4.0	7473	chr2L	4601703	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609176	intron	dp -	chr2L_17_4605001	chr2L_4605001	RAL-517
94	chr2L	4918170	4918180	chr2L	4923243	4923253	jockey	4	5073	4.5	0.0	2.2	1.2	5083	chr2L	4918170	intron	hoe1 -	chr2L	4920712	intron	hoe1 -	chr2L	4923253	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-517
98	chr2L	5342766	5342793	chr2L	5345146	5345173	Doc	6	2379	3.0	1.5	2.2	1.9	2407	chr2L	5342766	intergenic	not near genes	chr2L	5343970	intergenic	not near genes	chr2L	5345173	intergenic	not near genes	chr2L_6_5340001	chr2L_5340001	RAL-517
109	chr2L	5827712	5827734	chr2L	5836720	5836742	roo	13	9005	6.5	5.5	6.0	1.9	9030	chr2L	5827712	intron	TrissinR +	chr2L	5832227	intron	TrissinR +	chr2L	5836742	intron	TrissinR +	chr2L_13_5830001	chr2L_5830001	RAL-517
120	chr2L	6363148	6363181	chr2L	6366070	6366102	Burdock	11	2918	3.5	2.5	3.0	2.8	2954	chr2L	6363148	intergenic	not near genes	chr2L	6364625	intergenic	not near genes	chr2L	6366102	intergenic	not near genes	chr2L_11_6360001	chr2L_6360001	RAL-517
122	chr2L	6426855	6426884	chr2L	6445115	6445144	roo	11	18259	3.5	2.5	3.0	2.8	18289	chr2L	6426855	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445144	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	RAL-517
129	chr2L	6876772	6876810	chr2L	6882963	6882997	diver	6	6188	3.0	1.0	2.0	2.0	6225	chr2L	6876772	intron	Nlg2 +	chr2L	6879884	intron	Nlg2 +	chr2L	6882997	intron	Nlg2 +	chr2L_6_6875001	chr2L_6875001	RAL-517
137	chr2L	7343328	7343359	chr2L	7350444	7350475	roo	12	7116	2.0	5.5	3.8	2.5	7147	chr2L	7343328	intron	Wnt6 +	chr2L	7346902	intron	Wnt6 +	chr2L	7350475	intron	Wnt6 +	chr2L_12_7345001	chr2L_7345001	RAL-517
140	chr2L	7579199	7579223	chr2L	7579390	7579414	BS	5	191	1.5	0.0	0.8	2.8	215	chr2L	7579199	intergenic	RapGAP1 -	chr2L	7579306	intergenic	RapGAP1 -	chr2L	7579414	intergenic	RapGAP1 -	chr2L_5_7575001	chr2L_7575001	RAL-517
161	chr2L	8723113	8723145	chr2L	8731490	8731522	Tirant	10	8377	1.5	4.0	2.8	2.6	8409	chr2L	8723113	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731522	intron	raw -	chr2L_10_8725001	chr2L_8725001	RAL-517
187	chr2L	9973728	9973759	chr2L	9980847	9980878	HMS-Beagle	14	7117	6.0	5.5	5.8	2.1	7150	chr2L	9973728	intergenic	not near genes	chr2L	9977303	intergenic	not near genes	chr2L	9980878	intergenic	not near genes	chr2L_14_9975001	chr2L_9975001	RAL-517
192	chr2L	10156325	10156346	chr2L	10163795	10163816	blood	5	7468	2.5	0.5	1.5	2.0	7491	chr2L	10156325	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163816	intron	CG44153 -	chr2L_5_10160001	chr2L_10160001	RAL-517
197	chr2L	10592848	10592870	chr2L	10600510	10600532	opus	9	7660	1.0	3.0	2.0	3.0	7684	chr2L	10592848	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600532	intron	Trim9 +	chr2L_9_10595001	chr2L_10595001	RAL-517
205	chr2L	10862845	10862875	chr2L	10864459	10864489	Rt1c	8	1612	2.5	5.0	3.8	1.7	1644	chr2L	10862845	3` UTR	CR43807 -	chr2L	10863667	intron	CR43807 -	chr2L	10864489	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	RAL-517
207	chr2L	10946962	10946972	chr2L	10956162	10956185	roo	6	9210	3.5	9.0	6.2	0.8	9223	chr2L	10946962	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956185	intron	dpr2 -	chr2L_6_10950001	chr2L_10950001	RAL-517
216	chr2L	11540599	11540615	chr2L	11548001	11548016	Tabor	6	7402	0.5	2.0	1.2	2.7	7417	chr2L	11540599	intergenic	not near genes	chr2L	11544308	intergenic	not near genes	chr2L	11548016	intergenic	not near genes	chr2L_6_11540001	chr2L_11540001	RAL-517
217	chr2L	11563635	11563667	chr2L	11568839	11568871	copia	9	5201	4.0	1.0	2.5	2.6	5236	chr2L	11563635	intergenic	not near genes	chr2L	11566253	intergenic	not near genes	chr2L	11568871	intergenic	not near genes	chr2L_9_11565001	chr2L_11565001	RAL-517
219	chr2L	11713507	11713538	chr2L	11720975	11721006	blood	7	7466	2.0	2.0	2.0	2.3	7499	chr2L	11713507	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-517
233	chr2L	12558323	12558352	chr2L	12565450	12565481	HMS-Beagle	8	7129	0.5	1.0	0.8	4.4	7158	chr2L	12558323	intergenic	not near genes	chr2L	12561902	intergenic	not near genes	chr2L	12565481	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	RAL-517
236	chr2L	12728927	12728947	chr2L	12729163	12729187	pogo	8	239	0.5	6.5	3.5	1.8	260	chr2L	12728927	intron	MRP +	chr2L	12729057	intron	MRP +	chr2L	12729187	exon	MRP +	chr2L_8_12725001	chr2L_12725001	RAL-517
237	chr2L	12731060	12731073	chr2L	12735827	12735840	F-element	5	4767	4.0	3.5	3.8	1.0	4780	chr2L	12731060	intron	MRP +	chr2L	12733450	intron	MRP +	chr2L	12735840	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-517
241	chr2L	12791603	12791629	chr2L	12795278	12795303	F-element	14	3674	3.5	4.0	3.8	2.9	3700	chr2L	12791603	intergenic	not near genes	chr2L	12793453	intergenic	not near genes	chr2L	12795303	intergenic	not near genes	chr2L_14_12790001	chr2L_12790001	RAL-517
242	chr2L	12861693	12861720	chr2L	12863160	12863186	hobo	12	1466	3.5	2.0	2.8	3.2	1493	chr2L	12861693	intergenic	not near genes	chr2L	12862440	intergenic	not near genes	chr2L	12863186	intergenic	not near genes	chr2L_12_12860001	chr2L_12860001	RAL-517
243	chr2L	12894015	12894051	chr2L	12895482	12895495	hobo	4	1461	1.5	1.5	1.5	1.6	1480	chr2L	12894015	intergenic	not near genes	chr2L	12894755	intergenic	not near genes	chr2L	12895495	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	RAL-517
244	chr2L	12933855	12933876	chr2L	12941322	12941343	blood	8	7466	4.0	1.0	2.5	2.3	7488	chr2L	12933855	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941343	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	RAL-517
252	chr2L	13405649	13405677	chr2L	13410446	13410474	Doc	5	4797	1.5	5.5	3.5	1.1	4825	chr2L	13405649	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_5_13405001	chr2L_13405001	RAL-517
255	chr2L	13449462	13449490	chr2L	13456898	13456926	Quasimodo	7	7436	2.5	2.0	2.2	2.2	7464	chr2L	13449462	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453194	intron	CG42784 +	chr2L	13456926	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	RAL-517
256	chr2L	13481449	13481473	chr2L	13482056	13482080	jockey	11	606	3.0	2.5	2.8	2.9	631	chr2L	13481449	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482080	intron	CG42784 +	chr2L_11_13480001	chr2L_13480001	RAL-517
262	chr2L	13761809	13761833	chr2L	13762920	13762944	Doc	6	1111	3.0	4.0	3.5	1.3	1135	chr2L	13761809	intron	TM9SF4 +	chr2L	13762376	intron	TM9SF4 +	chr2L	13762944	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-517
271	chr2L	14803878	14803911	chr2L	14809081	14809114	copia	11	5203	4.0	4.0	4.0	2.2	5236	chr2L	14803878	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809114	intergenic	not near genes	chr2L_11_14805001	chr2L_14805001	RAL-517
272	chr2L	14984383	14984398	chr2L	14991984	14992000	opus	7	7601	4.5	1.5	3.0	1.8	7617	chr2L	14984383	intron	mol -	chr2L	14988192	intron	mol -	chr2L	14992000	intron	mol -	chr2L_7_14985001	chr2L_14985001	RAL-517
278	chr2L	15446060	15446076	chr2L	15453520	15453545	blood	4	7467	2.5	1.0	1.8	1.4	7485	chr2L	15446060	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453545	intergenic	not near genes	chr2L_4_15445001	chr2L_15445001	RAL-517
279	chr2L	15586408	15586439	chr2L	15593460	15593491	297	10	7052	3.5	3.0	3.2	2.4	7083	chr2L	15586408	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593491	intergenic	not near genes	chr2L_10_15585001	chr2L_15585001	RAL-517
282	chr2L	15956024	15956056	chr2L	15957491	15957518	hobo	7	1466	3.0	3.0	3.0	1.8	1494	chr2L	15956024	intron	beat-Ib -	chr2L	15956771	intron	beat-Ib -	chr2L	15957518	intron	beat-Ib -	chr2L_7_15955001	chr2L_15955001	RAL-517
286	chr2L	16071771	16071771	chr2L	16217659	16217660	copia	28	145889	13.0	21.0	17.0	1.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_28_16140001	chr2L_16140001	RAL-517
289	chr2L	16071770	16071771	chr2L	16217660	16217660	copia	13	145889	13.0	20.0	16.5	0.7	145890	chr2L	16071770	intron	beat-Ia +	chr2L	16144715	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_13_16140001	chr2L_16140001	RAL-517
292	chr2L	16280255	16280285	chr2L	16281425	16281455	1360	9	1170	2.5	5.5	4.0	1.8	1200	chr2L	16280255	intron	crp -	chr2L	16280855	intron	crp -	chr2L	16281455	intron	crp -	chr2L_9_16280001	chr2L_16280001	RAL-517
303	chr2L	16958103	16958121	chr2L	16962891	16962909	Doc	5	4788	1.5	1.0	1.2	2.3	4806	chr2L	16958103	intergenic	not near genes	chr2L	16960506	intergenic	not near genes	chr2L	16962909	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-517
308	chr2L	17167564	17167587	chr2L	17167805	17167828	pogo	5	241	1.5	1.5	1.5	2.0	264	chr2L	17167564	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167696	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167828	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17165001	chr2L_17165001	RAL-517
309	chr2L	17199160	17199185	chr2L	17200627	17200652	hobo	5	1467	1.5	1.5	1.5	2.0	1492	chr2L	17199160	intron	beat-IIIc -	chr2L	17199906	intron	beat-IIIc -	chr2L	17200652	intron	beat-IIIc -	chr2L_5_17195001	chr2L_17195001	RAL-517
310	chr2L	17273188	17273222	chr2L	17277971	17277995	F-element	9	4782	2.5	2.0	2.2	2.8	4807	chr2L	17273188	intergenic	not near genes	chr2L	17275592	intergenic	not near genes	chr2L	17277995	intergenic	not near genes	chr2L_9_17275001	chr2L_17275001	RAL-517
321	chr2L	17727873	17727877	chr2L	17729339	17729344	hobo	4	1466	1.0	7.0	4.0	0.8	1471	chr2L	17727873	intron	CadN -	chr2L	17728608	intron	CadN -	chr2L	17729344	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-517
322	chr2L	17819924	17819950	chr2L	17825127	17825153	copia	7	5202	2.0	2.0	2.0	2.3	5229	chr2L	17819924	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825153	intron	CadN2 -	chr2L_7_17820001	chr2L_17820001	RAL-517
324	chr2L	17911963	17911988	chr2L	17914140	17914166	pogo	5	2175	4.0	4.5	4.2	1.0	2203	chr2L	17911963	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914166	intergenic	CG43271 -	chr2L_5_17910001	chr2L_17910001	RAL-517
325	chr2L	17951946	17951971	chr2L	17953413	17953419	hobo	7	1464	3.0	5.0	4.0	1.4	1473	chr2L	17951946	intergenic	CR44398 -,CR44397 -	chr2L	17952682	intergenic	not near genes	chr2L	17953419	intergenic	not near genes	chr2L_7_17950001	chr2L_17950001	RAL-517
328	chr2L	18051879	18051902	chr2L	18061025	18061049	roo	4	9147	1.5	2.5	2.0	1.3	9170	chr2L	18051879	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061049	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-517
335	chr2L	16217660	16217660	chr2L	18331928	18331928	F-element	8	2114268	19.5	6.0	12.8	0.6	2114268	chr2L	16217660	intergenic	not near genes	chr2L	17274794	intergenic	not near genes	chr2L	18331928	intron	Fas3 +	chr2L_8_17270001	chr2L_17270001	RAL-517
336	chr2L	18408026	18408049	chr2L	18412810	18412832	Doc	6	4783	4.0	0.0	2.0	2.0	4806	chr2L	18408026	intergenic	not near genes	chr2L	18410429	intergenic	not near genes	chr2L	18412832	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-517
346	chr2L	19147371	19147397	chr2L	19154406	19154432	297	9	7034	0.0	4.0	2.0	3.0	7061	chr2L	19147371	intron	brat +	chr2L	19150902	intron	brat +	chr2L	19154432	intron	brat +	chr2L_9_19150001	chr2L_19150001	RAL-517
348	chr2L	19345016	19345042	chr2L	19357224	19357251	blood	5	12209	2.0	1.5	1.8	1.8	12235	chr2L	19345016	intron	dnt -	chr2L	19351134	intron	dnt -	chr2L	19357251	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-517
355	chr2L	19620115	19620128	chr2L	19621088	19621113	jockey	9	985	6.5	5.5	6.0	1.3	998	chr2L	19620115	intron	Lar +	chr2L	19620614	intron	Lar +	chr2L	19621113	intron	Lar +	chr2L_9_19620001	chr2L_19620001	RAL-517
357	chr2L	19652573	19652604	chr2L	19674008	19674040	opus	8	21436	1.5	2.5	2.0	2.7	21467	chr2L	19652573	intron	Lar +	chr2L	19663306	intron	Lar +	chr2L	19674040	intron	Lar +	chr2L_8_19660001	chr2L_19660001	RAL-517
358	chr2L	19703538	19703567	chr2L	19712674	19712701	roo	7	9135	7.0	3.0	5.0	1.2	9163	chr2L	19703538	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712701	intron	Lar +	chr2L_7_19705001	chr2L_19705001	RAL-517
359	chr2L	19762820	19762836	chr2L	19763062	19763078	pogo	6	241	1.5	2.0	1.8	2.1	258	chr2L	19762820	intron	fbp -	chr2L	19762949	intron	fbp -	chr2L	19763078	intron	fbp -	chr2L_6_19760001	chr2L_19760001	RAL-517
367	chr2L	20303161	20303186	chr2L	20310629	20310654	blood	8	7468	3.5	2.0	2.8	2.1	7493	chr2L	20303161	intergenic	not near genes	chr2L	20306908	intergenic	not near genes	chr2L	20310654	intergenic	not near genes	chr2L_8_20305001	chr2L_20305001	RAL-517
369	chr2L	20372227	20372256	chr2L	20372468	20372497	pogo	8	241	4.0	8.5	6.2	1.1	270	chr2L	20372227	intergenic	Ugt37a1 -	chr2L	20372362	intergenic	Ugt37a1 -	chr2L	20372497	exon	Ugt37a1 -	chr2L_8_20370001	chr2L_20370001	RAL-517
373	chr2L	20568665	20568687	chr2L	20569053	20569077	X-element	5	389	1.0	3.0	2.0	1.7	412	chr2L	20568665	intron	CR45347 +	chr2L	20568871	intron	CR45347 +	chr2L	20569077	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	RAL-517
374	chr2L	20576220	20576252	chr2L	20583688	20583720	blood	16	7467	1.5	2.0	1.8	5.7	7500	chr2L	20576220	intergenic	CR45347 +	chr2L	20579970	intergenic	not near genes	chr2L	20583720	3` UTR	CR44909 -	chr2L_16_20575001	chr2L_20575001	RAL-517
381	chr2L	20835819	20835832	chr2L	20836535	20836549	Quasimodo	4	716	1.5	2.5	2.0	1.3	730	chr2L	20835819	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836549	intergenic	Spn38F -	chr2L_4_20835001	chr2L_20835001	RAL-517
386	chr2L	20976640	20976681	chr2L	20981453	20981495	X-element	11	4814	2.0	1.5	1.8	3.9	4855	chr2L	20976640	intron	CG42238 -	chr2L	20979068	intron	CG42238 -	chr2L	20981495	intron	CG42238 -	chr2L_11_20975001	chr2L_20975001	RAL-517
388	chr2L	21020271	21020311	chr2L	21023948	21023986	NOF	10	3677	0.5	2.0	1.2	4.5	3715	chr2L	21020271	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_10_21020001	chr2L_21020001	RAL-517
389	chr2L	21041136	21041151	chr2L	21049397	21049412	Tirant	8	8261	3.0	4.5	3.8	1.7	8276	chr2L	21041136	intron	CG42238 -	chr2L	21045274	intron	CG42238 -	chr2L	21049412	intron	CG42238 -	chr2L_8_21045001	chr2L_21045001	RAL-517
396	chr2L	21597029	21597049	chr2L	21604773	21604792	roo	5	7744	1.5	2.0	1.8	1.8	7763	chr2L	21597029	intergenic	not near genes	chr2L	21600910	intergenic	not near genes	chr2L	21604792	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-517
401	chr2L	21981682	21981715	chr2L	21990847	21990879	roo	11	9165	4.0	1.5	2.8	2.9	9197	chr2L	21981682	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990879	exon	CG2528 -	chr2L_11_21985001	chr2L_21985001	RAL-517
407	chr2L	22258617	22258647	chr2L	22260741	22260771	G6	7	2124	2.5	4.0	3.2	1.7	2154	chr2L	22258617	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260771	intergenic	not near genes	chr2L_7_22255001	chr2L_22255001	RAL-517
409	chr2L	22581972	22581991	chr2L	22583761	22583780	S-element	5	1788	2.5	2.5	2.5	1.4	1808	chr2L	22581972	intron	CG17494 +	chr2L	22582876	intron	CG17494 +	chr2L	22583780	intron	CG17494 +	chr2L_5_22580001	chr2L_22580001	RAL-517
410	chr2L	22776426	22776452	chr2L	22778214	22778241	S-element	8	1789	0.5	2.0	1.2	3.6	1815	chr2L	22776426	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_8_22775001	chr2L_22775001	RAL-517
411	chr2R	529324	529346	chr2R	537949	537971	Max-element	6	8625	2.0	1.5	1.8	2.1	8647	chr2R	529324	intron	CG40378 +	chr2R	533648	intron	CG40378 +	chr2R	537971	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-517
412	chr2R	552757	552787	chr2R	553972	554005	1360	8	1214	2.5	3.0	2.8	2.1	1248	chr2R	552757	intron	CG40378 +	chr2R	553381	intron	CG40378 +	chr2R	554005	intron	CG40378 +	chr2R_8_550001	chr2R_550001	RAL-517
413	chr2R	1082369	1082385	chr2R	1087130	1087161	Doc	5	4769	2.5	4.5	3.5	1.1	4792	chr2R	1082369	intron	rl +	chr2R	1084765	intron	rl +	chr2R	1087161	intron	rl +	chr2R_5_1080001	chr2R_1080001	RAL-517
416	chr2R	2498982	2499015	chr2R	2508129	2508162	roo	4	9146	2.0	2.5	2.2	1.2	9180	chr2R	2498982	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508162	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	RAL-517
418	chr2R	2591545	2591555	chr2R	2594211	2594231	roo	4	2674	22.5	6.0	14.2	0.3	2686	chr2R	2591545	intergenic	not near genes	chr2R	2592888	intergenic	not near genes	chr2R	2594231	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	RAL-517
419	chr2R	3144091	3144109	chr2R	3393369	3393387	Doc	4	249278	9.5	3.5	6.5	0.5	249296	chr2R	3144091	intron	CG42596 +	chr2R	3268739	intergenic	not near genes	chr2R	3393387	intergenic	not near genes	chr2R_4_3265001	chr2R_3265001	RAL-517
424	chr2R	4622954	4622986	chr2R	4624113	4624145	1360	7	1158	1.0	3.0	2.0	2.3	1191	chr2R	4622954	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624145	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	RAL-517
438	chr2R	5869282	5869305	chr2R	5874357	5874381	flea	10	5076	4.5	3.5	4.0	2.0	5099	chr2R	5869282	intergenic	not near genes	chr2R	5871832	intergenic	not near genes	chr2R	5874381	intergenic	not near genes	chr2R_10_5870001	chr2R_5870001	RAL-517
442	chr2R	5902174	5902188	chr2R	5909733	5909746	17.6	6	7558	2.5	4.0	3.2	1.4	7572	chr2R	5902174	intron	CG43366 +	chr2R	5905960	intron	CG43366 +	chr2R	5909746	intron	CG43366 +	chr2R_6_5905001	chr2R_5905001	RAL-517
444	chr2R	6096712	6096748	chr2R	6101910	6101919	BS	13	5193	2.5	3.5	3.0	3.2	5207	chr2R	6096712	intron	EcR -	chr2R	6099316	intron	EcR -	chr2R	6101919	intron	EcR -	chr2R_13_6095001	chr2R_6095001	RAL-517
449	chr2R	6579773	6579805	chr2R	6584859	6584891	flea	4	5086	2.0	2.0	2.0	1.3	5118	chr2R	6579773	intron	jing +	chr2R	6582332	intron	jing +	chr2R	6584891	intron	jing +	chr2R_4_6580001	chr2R_6580001	RAL-517
455	chr2R	6952165	6952185	chr2R	6959745	6959765	opus	7	7580	3.0	1.0	2.0	2.3	7600	chr2R	6952165	intron,intron	mim -,CheB42c -	chr2R	6955965	intron,intron	mim -,CheB42c -	chr2R	6959765	intron,intron	mim -,CheB42c -	chr2R_7_6955001	chr2R_6955001	RAL-517
458	chr2R	7196565	7196600	chr2R	7201340	7201375	F-element	7	4775	1.0	0.5	0.8	3.9	4810	chr2R	7196565	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201375	intron	pk +	chr2R_7_7195001	chr2R_7195001	RAL-517
459	chr2R	7235820	7235847	chr2R	7240912	7240939	jockey	8	5091	5.0	0.5	2.8	2.1	5119	chr2R	7235820	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240939	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-517
463	chr2R	7608408	7608428	chr2R	7613611	7613631	I-element	10	5202	2.5	5.0	3.8	2.1	5223	chr2R	7608408	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613631	intron	CG1358 -	chr2R_10_7610001	chr2R_7610001	RAL-517
467	chr2R	7815672	7815704	chr2R	7822141	7822173	Burdock	8	6468	4.0	1.5	2.8	2.1	6501	chr2R	7815672	intergenic	CG1882 +	chr2R	7818922	intergenic	not near genes	chr2R	7822173	3` UTR	cathD -	chr2R_8_7815001	chr2R_7815001	RAL-517
469	chr2R	8160936	8160951	chr2R	8161026	8161041	1360	8	90	3.0	8.0	5.5	1.2	105	chr2R	8160936	intron	CG8708 -	chr2R	8160988	intron	CG8708 -	chr2R	8161041	intron	CG8708 -	chr2R_8_8160001	chr2R_8160001	RAL-517
473	chr2R	8330860	8330893	chr2R	8331346	8331379	roo	10	486	4.0	0.0	2.0	3.3	519	chr2R	8330860	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331379	intron	pdm3 +	chr2R_10_8330001	chr2R_8330001	RAL-517
476	chr2R	8398207	8398240	chr2R	8402988	8403021	Doc	6	4780	3.0	5.5	4.2	1.2	4814	chr2R	8398207	intron	CG2121 -	chr2R	8400614	intron	CG2121 -	chr2R	8403021	intron	CG2121 -	chr2R_6_8400001	chr2R_8400001	RAL-517
481	chr2R	8566031	8566061	chr2R	8566983	8567013	1360	13	951	2.5	6.0	4.2	2.5	982	chr2R	8566031	5` UTR	Cyp6a14 -	chr2R	8566522	5` UTR	Cyp6a14 -	chr2R	8567013	5` UTR	Cyp6a14 -	chr2R_13_8565001	chr2R_8565001	RAL-517
484	chr2R	8722783	8722793	chr2R	8723024	8723034	pogo	4	241	2.0	3.5	2.8	1.1	251	chr2R	8722783	intron	CG14767 -	chr2R	8722908	intron	CG14767 -	chr2R	8723034	intron	CG14767 -	chr2R_4_8720001	chr2R_8720001	RAL-517
486	chr2R	8777929	8777944	chr2R	8784133	8784148	diver	4	6204	0.5	4.0	2.2	1.2	6219	chr2R	8777929	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784148	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-517
487	chr2R	9151302	9151332	chr2R	9157772	9157802	Burdock	6	6468	0.5	4.5	2.5	1.7	6500	chr2R	9151302	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157802	intergenic	CG8008 -	chr2R_6_9150001	chr2R_9150001	RAL-517
488	chr2R	9212696	9212720	chr2R	9213179	9213206	roo	9	485	5.5	2.0	3.8	1.9	510	chr2R	9212696	intergenic	CR45309 +	chr2R	9212951	intergenic	CR45309 +	chr2R	9213206	5` UTR	CR45309 +	chr2R_9_9210001	chr2R_9210001	RAL-517
494	chr2R	9480080	9480110	chr2R	9490611	9490639	roo	5	10531	2.5	3.5	3.0	1.2	10559	chr2R	9480080	intergenic	not near genes	chr2R	9485360	intergenic	not near genes	chr2R	9490639	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-517
499	chr2R	9871039	9871071	chr2R	9871525	9871556	roo	9	482	0.5	1.0	0.8	5.0	517	chr2R	9871039	intron	cbx -	chr2R	9871298	intron	cbx -	chr2R	9871556	intron,5` UTR	cbx -,CG18446 +	chr2R_9_9870001	chr2R_9870001	RAL-517
500	chr2R	9945437	9945450	chr2R	9945632	9945646	BS	7	196	6.0	1.5	3.8	1.5	209	chr2R	9945437	intron	Mef2 -	chr2R	9945542	intron	Mef2 -	chr2R	9945646	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-517
503	chr2R	10005847	10005883	chr2R	10007012	10007048	1360	13	1163	3.5	5.5	4.5	2.4	1201	chr2R	10005847	intron	Pka-R2 -	chr2R	10006448	intron	Pka-R2 -	chr2R	10007048	intron	Pka-R2 -	chr2R_13_10005001	chr2R_10005001	RAL-517
507	chr2R	10176880	10176912	chr2R	10186047	10186079	roo	7	9167	3.5	1.0	2.2	2.2	9199	chr2R	10176880	intron	KCNQ -	chr2R	10181480	intron	KCNQ -	chr2R	10186079	intron	KCNQ -	chr2R_7_10180001	chr2R_10180001	RAL-517
516	chr2R	10585574	10585587	chr2R	10594151	10594170	Tirant	6	8581	3.0	1.5	2.2	1.9	8596	chr2R	10585574	intron	psq +	chr2R	10589872	intron	psq +	chr2R	10594170	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-517
523	chr2R	10948025	10948060	chr2R	10955576	10955609	17.6	15	7548	1.0	4.0	2.5	4.3	7584	chr2R	10948025	intergenic	not near genes	chr2R	10951817	intergenic	not near genes	chr2R	10955609	intergenic	not near genes	chr2R_15_10950001	chr2R_10950001	RAL-517
525	chr2R	11009815	11009845	chr2R	11018989	11019006	roo	11	9172	1.0	3.5	2.2	3.4	9191	chr2R	11009815	intron	luna -	chr2R	11014410	intron	luna -	chr2R	11019006	intron	luna -	chr2R_11_11010001	chr2R_11010001	RAL-517
528	chr2R	11207813	11207849	chr2R	11208006	11208042	BS	8	192	5.5	2.0	3.8	1.7	229	chr2R	11207813	intron	shn +	chr2R	11207928	intron	shn +	chr2R	11208042	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-517
533	chr2R	11415518	11415551	chr2R	11418667	11418700	opus	13	3147	2.5	4.5	3.5	2.9	3182	chr2R	11415518	intron	Drip -	chr2R	11417109	intron	Drip -	chr2R	11418700	intron	Drip -	chr2R_13_11415001	chr2R_11415001	RAL-517
535	chr2R	11472648	11472661	chr2R	11473845	11473858	pogo	7	1197	4.0	1.5	2.8	1.8	1210	chr2R	11472648	intergenic	not near genes	chr2R	11473253	intergenic	not near genes	chr2R	11473858	intergenic	not near genes	chr2R_7_11470001	chr2R_11470001	RAL-517
557	chr2R	12789299	12789325	chr2R	12797658	12797685	roo	6	8362	2.5	2.0	2.2	1.9	8386	chr2R	12789299	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797685	intron,3` UTR	sca +,CR45137 -	chr2R_6_12790001	chr2R_12790001	RAL-517
558	chr2R	13136842	13136869	chr2R	13141640	13141667	Doc	15	4797	3.0	3.5	3.2	3.6	4825	chr2R	13136842	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141667	intron	Cap-G +	chr2R_15_13135001	chr2R_13135001	RAL-517
564	chr2R	13580516	13580534	chr2R	13580843	13580884	jockey	11	347	0.5	4.0	2.2	3.4	368	chr2R	13580516	3` UTR	CG6191 -	chr2R	13580700	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580884	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_11_13580001	chr2R_13580001	RAL-517
569	chr2R	13905602	13905636	chr2R	13907583	13907618	Rt1a	8	1980	2.5	3.5	3.0	2.0	2016	chr2R	13905602	intron	shot -	chr2R	13906610	intron	shot -	chr2R	13907618	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-517
574	chr2R	14467309	14467325	chr2R	14476465	14476483	roo	7	9157	1.0	2.0	1.5	2.8	9174	chr2R	14467309	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476483	5` UTR	CR44462 +	chr2R_7_14470001	chr2R_14470001	RAL-517
578	chr2R	14889206	14889230	chr2R	14897814	14897838	Max-element	7	8608	6.5	0.5	3.5	1.6	8632	chr2R	14889206	intergenic	Cyp6a8 -	chr2R	14893522	intergenic	not near genes	chr2R	14897838	intergenic	not near genes	chr2R_7_14890001	chr2R_14890001	RAL-517
583	chr2R	15004731	15004756	chr2R	15005060	15005085	jockey	6	329	5.5	1.5	3.5	1.3	354	chr2R	15004731	intergenic	not near genes	chr2R	15004908	intergenic	not near genes	chr2R	15005085	intergenic	not near genes	chr2R_6_15000001	chr2R_15000001	RAL-517
585	chr2R	15084981	15085008	chr2R	15092026	15092057	297	9	7048	1.5	3.5	2.5	2.6	7076	chr2R	15084981	intergenic	not near genes	chr2R	15088519	intergenic	not near genes	chr2R	15092057	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	RAL-517
587	chr2R	15119320	15119342	chr2R	15127801	15127803	Tirant	8	8478	2.5	4.5	3.5	1.8	8483	chr2R	15119320	intron	chn +	chr2R	15123562	intron	chn +	chr2R	15127803	intron	chn +	chr2R_8_15120001	chr2R_15120001	RAL-517
596	chr2R	16539635	16539671	chr2R	16544844	16544880	copia	4	5209	0.0	0.5	0.2	3.3	5245	chr2R	16539635	intergenic	not near genes	chr2R	16542258	intergenic	not near genes	chr2R	16544880	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	RAL-517
612	chr2R	17147236	17147268	chr2R	17152267	17152299	jockey	8	5031	3.5	4.5	4.0	1.6	5063	chr2R	17147236	intergenic	not near genes	chr2R	17149768	intergenic	not near genes	chr2R	17152299	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	RAL-517
613	chr2R	17176355	17176387	chr2R	17182545	17182577	diver	8	6190	2.0	2.0	2.0	2.7	6222	chr2R	17176355	intergenic	not near genes	chr2R	17179466	intergenic	not near genes	chr2R	17182577	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	RAL-517
615	chr2R	17236510	17236539	chr2R	17241710	17241743	copia	5	5202	3.5	3.5	3.5	1.1	5233	chr2R	17236510	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-517
622	chr2R	17784034	17784035	chr2R	17784270	17784274	pogo	4	238	1.5	6.5	4.0	0.8	240	chr2R	17784034	intergenic	mir-31a -	chr2R	17784154	intergenic	mir-31a -	chr2R	17784274	intergenic	mir-31a -	chr2R_4_17780001	chr2R_17780001	RAL-517
626	chr2R	18045680	18045704	chr2R	18046032	18046056	jockey	4	350	2.0	1.5	1.8	1.4	376	chr2R	18045680	intergenic	not near genes	chr2R	18045868	intergenic	not near genes	chr2R	18046056	intergenic	CG5767 -	chr2R_4_18045001	chr2R_18045001	RAL-517
627	chr2R	18111688	18111696	chr2R	18115556	18115564	F-element	4	3868	7.0	1.0	4.0	0.8	3876	chr2R	18111688	intergenic	not near genes	chr2R	18113626	intergenic	not near genes	chr2R	18115564	intergenic	not near genes	chr2R_4_18110001	chr2R_18110001	RAL-517
630	chr2R	18358388	18358418	chr2R	18372600	18372630	roo	15	14212	1.5	0.0	0.8	8.3	14242	chr2R	18358388	intergenic	not near genes	chr2R	18365509	intergenic	not near genes	chr2R	18372630	intergenic	not near genes	chr2R_15_18365001	chr2R_18365001	RAL-517
631	chr2R	18575802	18575831	chr2R	18581990	18582018	3S18	10	6187	0.5	3.0	1.8	3.6	6216	chr2R	18575802	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_10_18575001	chr2R_18575001	RAL-517
632	chr2R	18590868	18590899	chr2R	18600020	18600043	roo	10	9151	3.0	1.5	2.2	3.1	9175	chr2R	18590868	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600043	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	RAL-517
646	chr2R	19776598	19776625	chr2R	19779921	19779941	jockey	10	3321	4.5	4.0	4.2	1.9	3343	chr2R	19776598	intergenic	not near genes	chr2R	19778270	intergenic	not near genes	chr2R	19779941	intergenic	not near genes	chr2R_10_19775001	chr2R_19775001	RAL-517
647	chr2R	19914842	19914851	chr2R	19922254	19922263	mdg1	5	7412	4.0	1.0	2.5	1.4	7421	chr2R	19914842	intergenic	not near genes	chr2R	19918552	intergenic	not near genes	chr2R	19922263	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-517
649	chr2R	19957433	19957456	chr2R	19962635	19962658	copia	4	5201	3.0	1.0	2.0	1.3	5225	chr2R	19957433	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962658	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-517
650	chr2R	20069235	20069274	chr2R	20071874	20071888	opus	4	2632	0.0	0.0	0.0	4.0	2653	chr2R	20069235	intergenic	not near genes	chr2R	20070562	intergenic	not near genes	chr2R	20071888	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	RAL-517
660	chr2R	20739447	20739478	chr2R	20744213	20744246	F-element	5	4762	2.5	3.0	2.8	1.3	4799	chr2R	20739447	intron	dpr +	chr2R	20741846	intron	dpr +	chr2R	20744246	intron	dpr +	chr2R_5_20740001	chr2R_20740001	RAL-517
665	chr2R	21151115	21151144	chr2R	21153748	21153776	opus	13	2632	1.5	2.5	2.0	4.3	2661	chr2R	21151115	intron	CG30389 -	chr2R	21152446	intron	CG30389 -	chr2R	21153776	intron	CG30389 -	chr2R_13_21150001	chr2R_21150001	RAL-517
673	chr2R	21738284	21738308	chr2R	21747444	21747467	roo	5	9156	2.0	1.5	1.8	1.8	9183	chr2R	21738284	intergenic	not near genes	chr2R	21742876	intergenic	not near genes	chr2R	21747467	intergenic	not near genes	chr2R_5_21740001	chr2R_21740001	RAL-517
674	chr2R	21753085	21753101	chr2R	21753570	21753584	roo	6	484	4.0	5.0	4.5	1.1	499	chr2R	21753085	intergenic	not near genes	chr2R	21753334	intergenic	not near genes	chr2R	21753584	intergenic	not near genes	chr2R_6_21750001	chr2R_21750001	RAL-517
676	chr2R	21809524	21809548	chr2R	21817764	21817788	roo	5	8240	2.0	5.0	3.5	1.1	8264	chr2R	21809524	intergenic	not near genes	chr2R	21813656	intergenic	not near genes	chr2R	21817788	intergenic	not near genes	chr2R_5_21810001	chr2R_21810001	RAL-517
688	chr2R	22349688	22349718	chr2R	22351472	22351502	jockey	12	1784	5.0	4.0	4.5	2.2	1814	chr2R	22349688	intron	Liprin-gamma -	chr2R	22350595	intron	Liprin-gamma -	chr2R	22351502	intron	Liprin-gamma -	chr2R_12_22350001	chr2R_22350001	RAL-517
691	chr2R	22465208	22465235	chr2R	22465517	22465545	BS	11	309	2.5	0.0	1.2	5.0	337	chr2R	22465208	intron	CG10384 +	chr2R	22465376	intron	CG10384 +	chr2R	22465545	intron	CG10384 +	chr2R_11_22465001	chr2R_22465001	RAL-517
694	chr2R	22525748	22525781	chr2R	22529303	22529336	jockey	9	3554	3.5	4.5	4.0	1.8	3588	chr2R	22525748	intron	px -	chr2R	22527542	intron	px -	chr2R	22529336	intron	px -	chr2R_9_22525001	chr2R_22525001	RAL-517
696	chr2R	22774966	22775002	chr2R	22775382	22775421	jockey	12	418	1.5	3.5	2.5	3.4	455	chr2R	22774966	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775421	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-517
708	chr2R	23529580	23529593	chr2R	23537156	23537165	412	4	7575	7.5	6.5	7.0	0.5	7585	chr2R	23529580	intron	bw -	chr2R	23533372	intron	bw -	chr2R	23537165	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-517
713	chr2R	23914305	23914330	chr2R	23921929	23921948	412	10	7620	3.5	5.0	4.2	1.9	7643	chr2R	23914305	exon	kcc +	chr2R	23918126	intron	kcc +	chr2R	23921948	intron	kcc +	chr2R_10_23915001	chr2R_23915001	RAL-517
715	chr2R	24147066	24147096	chr2R	24154644	24154663	412	9	7575	3.5	2.0	2.8	2.4	7597	chr2R	24147066	intron	Dat +	chr2R	24150864	intron	Dat +	chr2R	24154663	intron	Dat +	chr2R_9_24150001	chr2R_24150001	RAL-517
716	chr2R	24177240	24177262	chr2R	24184725	24184747	412	9	7484	5.0	4.0	4.5	1.6	7507	chr2R	24177240	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184747	3` UTR	Nop60B +	chr2R_9_24180001	chr2R_24180001	RAL-517
722	chr2R	24353428	24353454	chr2R	24361790	24361814	roo	8	8362	2.0	4.5	3.2	1.9	8386	chr2R	24353428	intron,intron	bs +,CR44811 -	chr2R	24357621	intron,intron	bs +,CR44811 -	chr2R	24361814	intron,intron	bs +,CR44811 -	chr2R_8_24355001	chr2R_24355001	RAL-517
725	chr2R	24647590	24647617	chr2R	24655146	24655164	412	4	7554	2.5	1.0	1.8	1.4	7574	chr2R	24647590	intergenic	not near genes	chr2R	24651377	intergenic	not near genes	chr2R	24655164	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	RAL-517
727	chr2R	24727885	24727917	chr2R	24735390	24735393	mdg1	12	7503	1.5	7.0	4.2	2.3	7508	chr2R	24727885	intron	Mid1 -	chr2R	24731639	intron	Mid1 -	chr2R	24735393	intron	Mid1 -	chr2R_12_24730001	chr2R_24730001	RAL-517
728	chr2R	24763610	24763644	chr2R	24765584	24765620	G2	19	1975	5.0	2.0	3.5	4.2	2010	chr2R	24763610	exon	CG3894 +	chr2R	24764615	intron	CG3894 +	chr2R	24765620	exon	CG3894 +	chr2R_19_24760001	chr2R_24760001	RAL-517
733	chr2R	25141656	25141681	chr2R	25159346	25159371	roo	5	17690	2.0	5.0	3.5	1.1	17715	chr2R	25141656	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159371	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-517
737	chr3L	110211	110243	chr3L	119377	119409	roo	5	9167	1.5	2.5	2.0	1.7	9198	chr3L	110211	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119409	intergenic	not near genes	chr3L_5_110001	chr3L_110001	RAL-517
742	chr3L	402691	402713	chr3L	409744	409766	297	6	7053	5.5	7.5	6.5	0.8	7075	chr3L	402691	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409766	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-517
754	chr3L	789913	789946	chr3L	790398	790431	roo	11	484	2.5	1.5	2.0	3.7	518	chr3L	789913	intergenic	not near genes	chr3L	790172	intergenic	not near genes	chr3L	790431	intergenic	not near genes	chr3L_11_790001	chr3L_790001	RAL-517
757	chr3L	925175	925207	chr3L	932600	932633	mdg1	10	7423	4.5	2.5	3.5	2.2	7458	chr3L	925175	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932633	intron	Glut1 +	chr3L_10_925001	chr3L_925001	RAL-517
759	chr3L	939777	939800	chr3L	940894	940921	jockey	15	1120	7.0	4.0	5.5	2.3	1144	chr3L	939777	intron	Glut1 +	chr3L	940349	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_15_940001	chr3L_940001	RAL-517
766	chr3L	1047359	1047378	chr3L	1055171	1055173	412	4	7808	0.5	2.5	1.5	1.6	7814	chr3L	1047359	intron	bab1 -	chr3L	1051266	intron	bab1 -	chr3L	1055173	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-517
768	chr3L	1154131	1154149	chr3L	1163281	1163299	roo	4	9150	2.0	2.0	2.0	1.3	9168	chr3L	1154131	intron	bab2 -	chr3L	1158715	intron	bab2 -	chr3L	1163299	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-517
769	chr3L	1219594	1219619	chr3L	1227327	1227343	412	7	7731	3.0	4.5	3.8	1.5	7749	chr3L	1219594	intron	mwh +	chr3L	1223468	intron	mwh +	chr3L	1227343	intron	mwh +	chr3L_7_1220001	chr3L_1220001	RAL-517
778	chr3L	1505999	1506029	chr3L	1513596	1513624	17.6	12	7596	4.5	4.0	4.2	2.3	7625	chr3L	1505999	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513624	intron,intron	Psa +,cue -	chr3L_12_1505001	chr3L_1505001	RAL-517
782	chr3L	1740857	1740882	chr3L	1741102	1741127	pogo	7	244	3.0	0.5	1.8	2.5	270	chr3L	1740857	intron	Gk +	chr3L	1740992	intron	Gk +	chr3L	1741127	intron	Gk +	chr3L_7_1740001	chr3L_1740001	RAL-517
799	chr3L	3281445	3281477	chr3L	3281941	3281973	Doc	16	495	2.5	7.5	5.0	2.7	528	chr3L	3281445	intron	CG12017 +	chr3L	3281709	intron	CG12017 +	chr3L	3281973	intron	CG12017 +	chr3L_16_3280001	chr3L_3280001	RAL-517
800	chr3L	3475086	3475111	chr3L	3475529	3475554	jockey	7	443	1.0	3.5	2.2	2.2	468	chr3L	3475086	intron	CG42324 +	chr3L	3475320	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_7_3475001	chr3L_3475001	RAL-517
803	chr3L	3601303	3601332	chr3L	3606614	3606643	copia	4	5311	2.5	1.5	2.0	1.3	5340	chr3L	3601303	intron	Eip63E +	chr3L	3603973	intron	Eip63E +	chr3L	3606643	intron	Eip63E +	chr3L_4_3600001	chr3L_3600001	RAL-517
822	chr3L	4901146	4901153	chr3L	4907316	4907343	diver	5	6186	3.0	0.0	1.5	2.0	6197	chr3L	4901146	intergenic	CG13704 +	chr3L	4904244	intergenic	not near genes	chr3L	4907343	intergenic	not near genes	chr3L_5_4900001	chr3L_4900001	RAL-517
825	chr3L	5045461	5045485	chr3L	5050242	5050266	Doc	6	4781	2.5	1.5	2.0	2.0	4805	chr3L	5045461	intron	Con -	chr3L	5047864	intron	Con -	chr3L	5050266	intron	Con -	chr3L_6_5045001	chr3L_5045001	RAL-517
830	chr3L	5299169	5299185	chr3L	5306605	5306621	Quasimodo	4	7436	1.5	1.5	1.5	1.6	7452	chr3L	5299169	intergenic	not near genes	chr3L	5302895	intergenic	not near genes	chr3L	5306621	intergenic	not near genes	chr3L_4_5300001	chr3L_5300001	RAL-517
836	chr3L	5537733	5537758	chr3L	5538072	5538100	jockey	10	341	0.0	3.5	1.8	3.6	367	chr3L	5537733	intergenic	not near genes	chr3L	5537916	intergenic	CG10625 -	chr3L	5538100	intergenic	CG10625 -	chr3L_10_5535001	chr3L_5535001	RAL-517
839	chr3L	5910034	5910057	chr3L	5910275	5910298	pogo	8	241	3.0	4.5	3.8	1.7	264	chr3L	5910034	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910298	intron	CG13288 +	chr3L_8_5910001	chr3L_5910001	RAL-517
840	chr3L	5926319	5926351	chr3L	5926509	5926541	BS	8	186	2.0	2.5	2.2	2.5	222	chr3L	5926319	intron	Vap-33B +	chr3L	5926430	intron	Vap-33B +	chr3L	5926541	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	RAL-517
843	chr3L	6001686	6001704	chr3L	6004386	6004399	jockey	4	2699	2.5	0.5	1.5	1.6	2713	chr3L	6001686	intron	PVRAP +	chr3L	6003042	intron	PVRAP +	chr3L	6004399	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-517
847	chr3L	6220918	6220948	chr3L	6230066	6230100	roo	11	9151	4.5	2.5	3.5	2.4	9182	chr3L	6220918	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230100	intergenic	not near genes	chr3L_11_6225001	chr3L_6225001	RAL-517
849	chr3L	6335012	6335039	chr3L	6335483	6335509	297	6	470	2.5	4.5	3.5	1.3	497	chr3L	6335012	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335509	intron	CG13300 -	chr3L_6_6335001	chr3L_6335001	RAL-517
852	chr3L	6405663	6405689	chr3L	6432127	6432153	roo	5	26463	4.0	3.0	3.5	1.1	26490	chr3L	6405663	intron	CG42747 +	chr3L	6418908	intron	CG42747 +	chr3L	6432153	intron	CG42747 +	chr3L_5_6415001	chr3L_6415001	RAL-517
855	chr3L	6781126	6781140	chr3L	6783139	6783153	Doc	4	2013	1.5	0.0	0.8	2.2	2027	chr3L	6781126	intergenic	not near genes	chr3L	6782140	intergenic	not near genes	chr3L	6783153	intergenic	not near genes	chr3L_4_6780001	chr3L_6780001	RAL-517
856	chr3L	6855925	6855950	chr3L	6860703	6860733	Doc	5	4783	2.5	1.0	1.8	1.8	4808	chr3L	6855925	intergenic	not near genes	chr3L	6858329	intergenic	not near genes	chr3L	6860733	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-517
862	chr3L	7377317	7377347	chr3L	7380422	7380452	297	6	3105	1.5	2.5	2.0	2.0	3135	chr3L	7377317	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380452	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	RAL-517
864	chr3L	7498727	7498743	chr3L	7503533	7503549	F-element	8	4806	1.5	0.5	1.0	4.0	4822	chr3L	7498727	5` UTR	CG8539 -	chr3L	7501138	intergenic	not near genes	chr3L	7503549	intergenic	not near genes	chr3L_8_7500001	chr3L_7500001	RAL-517
870	chr3L	7793713	7793742	chr3L	7800765	7800794	297	9	7052	4.0	4.0	4.0	1.8	7081	chr3L	7793713	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800794	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-517
871	chr3L	7886518	7886545	chr3L	7889035	7889063	Stalker4	10	2518	0.5	3.0	1.8	3.6	2545	chr3L	7886518	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889063	intron	CG32365 +	chr3L_10_7885001	chr3L_7885001	RAL-517
872	chr3L	7985364	7985397	chr3L	7987692	7987723	NOF	8	2328	1.5	3.0	2.2	2.5	2359	chr3L	7985364	intron	nmo +	chr3L	7986544	intron	nmo +	chr3L	7987723	intron	nmo +	chr3L_8_7985001	chr3L_7985001	RAL-517
877	chr3L	8791275	8791289	chr3L	8796695	8796707	I-element	5	5420	8.5	0.0	4.2	1.0	5432	chr3L	8791275	exon	Fhos +	chr3L	8793991	intron	Fhos +	chr3L	8796707	intron	Fhos +	chr3L_5_8790001	chr3L_8790001	RAL-517
881	chr3L	9076926	9076955	chr3L	9084486	9084515	412	12	7559	5.5	4.0	4.8	2.1	7589	chr3L	9076926	exon	Tequila +	chr3L	9080720	intron	Tequila +	chr3L	9084515	exon	Tequila +	chr3L_12_9080001	chr3L_9080001	RAL-517
884	chr3L	9130557	9130580	chr3L	9134317	9134341	412	11	3759	4.5	4.0	4.2	2.1	3784	chr3L	9130557	intergenic	bol -	chr3L	9132449	intergenic	not near genes	chr3L	9134341	intergenic	Dhpr +	chr3L_11_9130001	chr3L_9130001	RAL-517
885	chr3L	9164693	9164731	chr3L	9166160	9166198	hobo	6	1466	3.0	3.0	3.0	1.5	1505	chr3L	9164693	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_6_9165001	chr3L_9165001	RAL-517
886	chr3L	9219245	9219250	chr3L	9219917	9219921	jockey	4	672	4.5	1.0	2.8	1.1	676	chr3L	9219245	intergenic	not near genes	chr3L	9219583	intergenic	not near genes	chr3L	9219921	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-517
887	chr3L	9219256	9219279	chr3L	9219916	9219951	jockey	7	669	1.5	1.0	1.2	3.2	695	chr3L	9219256	intergenic	not near genes	chr3L	9219604	intergenic	not near genes	chr3L	9219951	intergenic	not near genes	chr3L_7_9215001	chr3L_9215001	RAL-517
889	chr3L	9270622	9270648	chr3L	9278377	9278401	roo	8	7754	4.0	3.5	3.8	1.7	7779	chr3L	9270622	intron	GluRIB +	chr3L	9274512	intron	GluRIB +	chr3L	9278401	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	RAL-517
895	chr3L	9443520	9443540	chr3L	9445305	9445331	S-element	7	1790	1.5	2.0	1.8	2.5	1811	chr3L	9443520	intron	CG33926 +	chr3L	9444426	intron	CG33926 +	chr3L	9445331	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	RAL-517
897	chr3L	9501704	9501722	chr3L	9502190	9502208	roo	5	486	2.0	2.0	2.0	1.7	504	chr3L	9501704	intron	path -	chr3L	9501956	intron	path -	chr3L	9502208	intron	path -	chr3L_5_9500001	chr3L_9500001	RAL-517
900	chr3L	9571906	9571932	chr3L	9572254	9572280	jockey	5	348	2.0	1.5	1.8	1.8	374	chr3L	9571906	intron	CG42673 +	chr3L	9572093	intron	CG42673 +	chr3L	9572280	intron	CG42673 +	chr3L_5_9570001	chr3L_9570001	RAL-517
902	chr3L	9575906	9575936	chr3L	9580984	9580997	jockey	7	5075	2.5	2.0	2.2	2.2	5091	chr3L	9575906	intron	CG42673 +	chr3L	9578452	intron	CG42673 +	chr3L	9580997	intron	CG42673 +	chr3L_7_9575001	chr3L_9575001	RAL-517
908	chr3L	9929683	9929701	chr3L	9938461	9938462	roo	5	8772	1.0	4.5	2.8	1.3	8779	chr3L	9929683	intron	CG34356 +	chr3L	9934072	intron	CG34356 +	chr3L	9938462	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	RAL-517
918	chr3L	10414943	10414977	chr3L	10417315	10417349	Doc	8	2371	0.5	3.0	1.8	2.9	2406	chr3L	10414943	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417349	intergenic	not near genes	chr3L_8_10415001	chr3L_10415001	RAL-517
930	chr3L	11087063	11087087	chr3L	11088851	11088876	S-element	6	1788	1.0	1.5	1.2	2.7	1813	chr3L	11087063	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088876	intron	JIL-1 -	chr3L_6_11085001	chr3L_11085001	RAL-517
931	chr3L	11105295	11105327	chr3L	11107006	11107038	X-element	7	1710	3.5	1.5	2.5	2.0	1743	chr3L	11105295	intergenic	not near genes	chr3L	11106166	intergenic	not near genes	chr3L	11107038	exon	CG32073 -	chr3L_7_11105001	chr3L_11105001	RAL-517
933	chr3L	11264465	11264495	chr3L	11271417	11271447	17.6	12	6950	2.5	2.5	2.5	3.4	6982	chr3L	11264465	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271447	intergenic	not near genes	chr3L_12_11265001	chr3L_11265001	RAL-517
934	chr3L	11277460	11277478	chr3L	11278451	11278473	Rt1a	5	992	1.0	3.0	2.0	1.7	1013	chr3L	11277460	intergenic	not near genes	chr3L	11277966	intergenic	not near genes	chr3L	11278473	intergenic	not near genes	chr3L_5_11275001	chr3L_11275001	RAL-517
936	chr3L	11723081	11723108	chr3L	11727876	11727903	Doc	8	4795	2.5	1.0	1.8	2.9	4822	chr3L	11723081	3` UTR	Bmcp +	chr3L	11725492	intron	Bmcp +	chr3L	11727903	3` UTR	Bmcp +	chr3L_8_11725001	chr3L_11725001	RAL-517
944	chr3L	11864558	11864585	chr3L	11865853	11865880	pogo	6	1295	1.5	5.5	3.5	1.3	1322	chr3L	11864558	intron	CG44837 -	chr3L	11865219	intron	CG44837 -	chr3L	11865880	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-517
958	chr3L	12874929	12874963	chr3L	12877221	12877255	jockey	8	2290	1.0	2.5	1.8	2.9	2326	chr3L	12874929	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877255	intergenic	not near genes	chr3L_8_12875001	chr3L_12875001	RAL-517
961	chr3L	12957794	12957815	chr3L	12962275	12962297	copia	6	4481	4.0	5.5	4.8	1.0	4503	chr3L	12957794	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962297	intergenic	not near genes	chr3L_6_12960001	chr3L_12960001	RAL-517
971	chr3L	13525158	13525187	chr3L	13532954	13532976	roo	8	7794	5.0	3.5	4.2	1.5	7818	chr3L	13525158	intergenic	not near genes	chr3L	13529067	intergenic	not near genes	chr3L	13532976	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	RAL-517
977	chr3L	13804545	13804572	chr3L	13822831	13822858	roo	8	18286	3.0	2.0	2.5	2.3	18313	chr3L	13804545	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822858	intergenic	not near genes	chr3L_8_13810001	chr3L_13810001	RAL-517
987	chr3L	14245573	14245594	chr3L	14245665	14245687	1360	12	94	3.0	2.0	2.5	3.4	114	chr3L	14245573	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245687	3` UTR	CR44561 -	chr3L_12_14245001	chr3L_14245001	RAL-517
990	chr3L	14295984	14296014	chr3L	14296470	14296500	roo	9	486	2.5	3.5	3.0	2.2	516	chr3L	14295984	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296500	intron	fz +	chr3L_9_14295001	chr3L_14295001	RAL-517
995	chr3L	14468450	14468477	chr3L	14473653	14473683	copia	6	5206	1.5	2.5	2.0	2.0	5233	chr3L	14468450	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473683	intron	bbg -	chr3L_6_14470001	chr3L_14470001	RAL-517
998	chr3L	14721191	14721205	chr3L	14723031	14723048	Rt1c	6	1842	5.0	3.5	4.2	1.2	1857	chr3L	14721191	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723048	intron	ome +	chr3L_6_14720001	chr3L_14720001	RAL-517
1003	chr3L	14954364	14954399	chr3L	14956033	14956068	transib2	6	1669	1.5	1.0	1.2	2.7	1704	chr3L	14954364	intergenic	not near genes	chr3L	14955216	intergenic	not near genes	chr3L	14956068	intergenic	not near genes	chr3L_6_14955001	chr3L_14955001	RAL-517
1006	chr3L	15085047	15085084	chr3L	15086213	15086233	1360	5	1161	0.5	1.0	0.8	2.8	1186	chr3L	15085047	intron	cp309 -	chr3L	15085640	intron	cp309 -	chr3L	15086233	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-517
1018	chr3L	15554933	15554946	chr3L	15556720	15556732	S-element	4	1787	3.0	5.0	4.0	0.8	1799	chr3L	15554933	intron	AGO2 +	chr3L	15555832	intron	AGO2 +	chr3L	15556732	intron	AGO2 +	chr3L_4_15555001	chr3L_15555001	RAL-517
1025	chr3L	16184104	16184130	chr3L	16188923	16188947	X-element	6	4819	1.0	2.0	1.5	2.4	4843	chr3L	16184104	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188947	intergenic	not near genes	chr3L_6_16185001	chr3L_16185001	RAL-517
1028	chr3L	16493978	16494005	chr3L	16494495	16494522	jockey	10	515	7.0	2.0	4.5	1.8	544	chr3L	16493978	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494522	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_10_16490001	chr3L_16490001	RAL-517
1032	chr3L	16616513	16616542	chr3L	16621841	16621850	297	6	5324	4.0	1.0	2.5	1.7	5337	chr3L	16616513	3` UTR	Abl -	chr3L	16619182	3` UTR	Abl -	chr3L	16621850	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-517
1037	chr3L	16945730	16945760	chr3L	16954880	16954892	roo	11	9150	3.0	3.0	3.0	2.8	9162	chr3L	16945730	exon	Obp73a +	chr3L	16950311	intergenic	not near genes	chr3L	16954892	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-517
1038	chr3L	17085003	17085029	chr3L	17094151	17094178	roo	7	9149	5.5	1.0	3.2	1.7	9175	chr3L	17085003	intron	Rbp6 -	chr3L	17089590	intron	Rbp6 -	chr3L	17094178	intron	Rbp6 -	chr3L_7_17085001	chr3L_17085001	RAL-517
1043	chr3L	17516978	17517008	chr3L	17524536	17524565	412	10	7554	3.0	1.0	2.0	3.3	7587	chr3L	17516978	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524565	3` UTR	CG7564 +	chr3L_10_17520001	chr3L_17520001	RAL-517
1047	chr3L	17730855	17730878	chr3L	17738183	17738208	mdg1	6	7329	1.0	1.5	1.2	2.7	7353	chr3L	17730855	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738208	intron	Ccn +	chr3L_6_17730001	chr3L_17730001	RAL-517
1049	chr3L	17799810	17799826	chr3L	17801597	17801613	S-element	7	1787	3.5	1.0	2.2	2.2	1803	chr3L	17799810	intron	NUCB1 -	chr3L	17800712	intron	NUCB1 -	chr3L	17801613	intron	NUCB1 -	chr3L_7_17800001	chr3L_17800001	RAL-517
1054	chr3L	18047709	18047741	chr3L	18056766	18056798	roo	8	9057	1.5	2.0	1.8	2.9	9089	chr3L	18047709	intron	Eip75B -	chr3L	18052254	intron	Eip75B -	chr3L	18056798	intron	Eip75B -	chr3L_8_18050001	chr3L_18050001	RAL-517
1065	chr3L	18506134	18506160	chr3L	18509597	18509623	F-element	6	3462	1.0	1.0	1.0	3.0	3489	chr3L	18506134	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509623	intergenic	not near genes	chr3L_6_18505001	chr3L_18505001	RAL-517
1066	chr3L	18528630	18528649	chr3L	18537791	18537810	roo	7	9161	2.5	1.5	2.0	2.3	9180	chr3L	18528630	intergenic	not near genes	chr3L	18533220	intergenic	not near genes	chr3L	18537810	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	RAL-517
1067	chr3L	18593950	18593979	chr3L	18595930	18595959	Doc	8	1980	0.5	0.5	0.5	5.3	2009	chr3L	18593950	intergenic	term -	chr3L	18594954	intergenic	not near genes	chr3L	18595959	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	RAL-517
1071	chr3L	18772410	18772441	chr3L	18781091	18781122	roo	4	8681	1.5	2.0	1.8	1.4	8712	chr3L	18772410	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_4_18775001	chr3L_18775001	RAL-517
1079	chr3L	19008861	19008873	chr3L	19009176	19009211	jockey	5	333	1.5	3.0	2.2	1.6	350	chr3L	19008861	intron	nkd -	chr3L	19009036	intron	nkd -	chr3L	19009211	intron	nkd -	chr3L_5_19005001	chr3L_19005001	RAL-517
1081	chr3L	19117042	19117071	chr3L	19124488	19124518	mdg1	10	7445	6.5	2.5	4.5	1.8	7476	chr3L	19117042	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124518	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	RAL-517
1082	chr3L	19208059	19208089	chr3L	19209433	19209463	Doc	6	1374	1.5	1.0	1.2	2.7	1404	chr3L	19208059	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209463	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-517
1092	chr3L	19820307	19820318	chr3L	19827856	19827867	412	4	7549	3.0	1.5	2.2	1.2	7560	chr3L	19820307	intron	Deaf1 +	chr3L	19824087	intron	Deaf1 +	chr3L	19827867	intron	Deaf1 +	chr3L_4_19820001	chr3L_19820001	RAL-517
1093	chr3L	19861842	19861853	chr3L	19863616	19863640	S-element	6	1785	2.0	0.5	1.2	2.7	1798	chr3L	19861842	5` UTR	CR45433 +	chr3L	19862741	intergenic	not near genes	chr3L	19863640	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	RAL-517
1097	chr3L	20113660	20113683	chr3L	20122917	20122940	roo	5	9257	2.0	1.5	1.8	1.8	9280	chr3L	20113660	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122940	intergenic	not near genes	chr3L_5_20115001	chr3L_20115001	RAL-517
1101	chr3L	20257338	20257363	chr3L	20258458	20258483	pogo	15	1119	3.0	4.5	3.8	3.1	1145	chr3L	20257338	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258483	intron	rdgC +	chr3L_15_20255001	chr3L_20255001	RAL-517
1107	chr3L	20476756	20476785	chr3L	20484355	20484384	springer	8	7598	2.5	5.5	4.0	1.6	7628	chr3L	20476756	3` UTR	isoQC +	chr3L	20480570	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_8_20480001	chr3L_20480001	RAL-517
1114	chr3L	21151866	21151897	chr3L	21156949	21156981	flea	7	5083	5.0	3.0	4.0	1.4	5115	chr3L	21151866	intron	Ac78C -	chr3L	21154424	intron	Ac78C -	chr3L	21156981	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-517
1115	chr3L	21243747	21243767	chr3L	21251309	21251330	412	4	7563	3.5	6.0	4.8	0.7	7583	chr3L	21243747	intron	Eip78C +	chr3L	21247538	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-517
1118	chr3L	21306147	21306170	chr3L	21315306	21315329	roo	12	9159	2.0	2.0	2.0	4.0	9182	chr3L	21306147	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310738	intron	Pc -	chr3L	21315329	3` UTR	Pc -	chr3L_12_21310001	chr3L_21310001	RAL-517
1120	chr3L	21361738	21361747	chr3L	21362692	21362700	G2	4	954	2.5	2.5	2.5	1.1	962	chr3L	21361738	intergenic	not near genes	chr3L	21362219	intergenic	not near genes	chr3L	21362700	intergenic	not near genes	chr3L_4_21360001	chr3L_21360001	RAL-517
1126	chr3L	21749320	21749342	chr3L	21754480	21754502	Doc	5	5160	2.5	4.5	3.5	1.1	5182	chr3L	21749320	intron	Syn1 -	chr3L	21751911	intron	Syn1 -	chr3L	21754502	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-517
1128	chr3L	22099677	22099707	chr3L	22105862	22105893	3S18	10	6186	3.5	2.0	2.8	2.6	6216	chr3L	22099677	intergenic	not near genes	chr3L	22102785	intergenic	not near genes	chr3L	22105893	intergenic	not near genes	chr3L_10_22100001	chr3L_22100001	RAL-517
1136	chr3L	22555770	22555793	chr3L	22563238	22563250	blood	4	7466	2.5	0.0	1.2	1.8	7480	chr3L	22555770	intergenic	not near genes	chr3L	22559510	intergenic	not near genes	chr3L	22563250	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-517
1137	chr3L	22577643	22577649	chr3L	22582402	22582435	Doc	6	4779	3.5	4.0	3.8	1.2	4792	chr3L	22577643	intergenic	not near genes	chr3L	22580039	intergenic	not near genes	chr3L	22582435	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-517
1138	chr3L	22617188	22617221	chr3L	22624640	22624673	blood	9	7449	4.0	2.0	3.0	2.2	7485	chr3L	22617188	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624673	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-517
1141	chr3L	22761386	22761419	chr3L	22766820	22766853	Ivk	5	5434	2.5	3.0	2.8	1.3	5467	chr3L	22761386	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-517
1149	chr3L	22989864	22989895	chr3L	22996838	22996868	297	11	6973	2.5	1.5	2.0	3.7	7004	chr3L	22989864	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996868	intergenic	not near genes	chr3L_11_22990001	chr3L_22990001	RAL-517
1157	chr3L	24012414	24012437	chr3L	24020754	24020778	roo	5	8341	1.5	4.0	2.8	1.3	8364	chr3L	24012414	intergenic	not near genes	chr3L	24016596	intergenic	not near genes	chr3L	24020778	intergenic	not near genes	chr3L_5_24015001	chr3L_24015001	RAL-517
1158	chr3L	24168786	24168822	chr3L	24176114	24176121	ZAM	8	7321	5.5	3.5	4.5	1.5	7335	chr3L	24168786	intron	Snap25 +	chr3L	24172454	intron	Snap25 +	chr3L	24176121	intron	Snap25 +	chr3L_8_24170001	chr3L_24170001	RAL-517
1159	chr3L	24791906	24791916	chr3L	24796685	24796694	Doc	4	4778	1.0	1.5	1.2	1.8	4788	chr3L	24791906	intergenic	not near genes	chr3L	24794300	intergenic	not near genes	chr3L	24796694	intergenic	not near genes	chr3L_4_24790001	chr3L_24790001	RAL-517
1163	chr3L	25628499	25628523	chr3L	25633270	25633294	F-element	4	4771	1.5	3.0	2.2	1.2	4795	chr3L	25628499	intron	CG41343 -	chr3L	25630896	intron	CG41343 -	chr3L	25633294	intron	CG41343 -	chr3L_4_25630001	chr3L_25630001	RAL-517
1174	chr3R	4206075	4206093	chr3R	4211650	4211668	mdg3	4	5575	1.5	2.0	1.8	1.4	5593	chr3R	4206075	intron	CG14636 -	chr3R	4208872	intron	CG14636 -	chr3R	4211668	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-517
1175	chr3R	4408411	4408433	chr3R	4412715	4412728	Juan	6	4302	2.0	3.5	2.8	1.6	4317	chr3R	4408411	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412728	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-517
1178	chr3R	4683178	4683203	chr3R	4684937	4684962	S-element	7	1759	3.0	3.0	3.0	1.8	1784	chr3R	4683178	intron	CG43427 +	chr3R	4684070	intron	CG43427 +	chr3R	4684962	intron	CG43427 +	chr3R_7_4680001	chr3R_4680001	RAL-517
1179	chr3R	4753247	4753255	chr3R	4757541	4757558	F-element	4	4301	4.0	5.0	4.5	0.7	4311	chr3R	4753247	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757558	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-517
1185	chr3R	5045851	5045873	chr3R	5052953	5052975	HMS-Beagle	7	7102	5.5	2.0	3.8	1.5	7124	chr3R	5045851	intron	CR43635 -	chr3R	5049413	intergenic	not near genes	chr3R	5052975	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-517
1186	chr3R	5067979	5068014	chr3R	5073496	5073530	mdg3	9	5517	3.0	3.0	3.0	2.2	5551	chr3R	5067979	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073530	intergenic	not near genes	chr3R_9_5070001	chr3R_5070001	RAL-517
1192	chr3R	5445959	5445993	chr3R	5452419	5452453	Burdock	6	6460	1.0	3.0	2.0	2.0	6494	chr3R	5445959	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452453	intron	CG14669 +	chr3R_6_5445001	chr3R_5445001	RAL-517
1197	chr3R	5747021	5747047	chr3R	5753211	5753236	diver	8	6190	2.0	3.0	2.5	2.3	6215	chr3R	5747021	intergenic	Madm +	chr3R	5750128	intergenic	not near genes	chr3R	5753236	intergenic	CG2091 -	chr3R_8_5750001	chr3R_5750001	RAL-517
1202	chr3R	5927565	5927590	chr3R	5927804	5927829	pogo	7	238	2.0	3.5	2.8	1.8	264	chr3R	5927565	intron	CG34113 -	chr3R	5927697	intron	CG34113 -	chr3R	5927829	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-517
1203	chr3R	6015961	6015992	chr3R	6024441	6024470	Tirant	8	8480	4.0	2.5	3.2	1.9	8509	chr3R	6015961	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024470	intergenic	not near genes	chr3R_8_6020001	chr3R_6020001	RAL-517
1205	chr3R	6158511	6158540	chr3R	6167093	6167111	Tirant	9	8581	3.5	2.0	2.8	2.4	8600	chr3R	6158511	intergenic	not near genes	chr3R	6162811	intergenic	not near genes	chr3R	6167111	intergenic	CG1077 +	chr3R_9_6160001	chr3R_6160001	RAL-517
1207	chr3R	6175186	6175207	chr3R	6182458	6182465	HMS-Beagle2	9	7270	1.5	3.0	2.2	2.8	7279	chr3R	6175186	intergenic	Osi1 +	chr3R	6178826	intron	CR45194 +	chr3R	6182465	intergenic	CR45194 +	chr3R_9_6175001	chr3R_6175001	RAL-517
1213	chr3R	6737499	6737529	chr3R	6739286	6739315	Doc	11	1785	1.5	1.0	1.2	5.0	1816	chr3R	6737499	intron	pb -	chr3R	6738407	intron	pb -	chr3R	6739315	intron	pb -	chr3R_11_6735001	chr3R_6735001	RAL-517
1235	chr3R	7694576	7694607	chr3R	7713637	7713668	invader3	7	19061	2.0	0.5	1.2	3.2	19092	chr3R	7694576	3` UTR	Nlg1 +	chr3R	7704122	intergenic	not near genes	chr3R	7713668	intergenic	not near genes	chr3R_7_7700001	chr3R_7700001	RAL-517
1236	chr3R	7729475	7729497	chr3R	7737413	7737433	Stalker2	8	7937	1.5	4.5	3.0	2.0	7958	chr3R	7729475	intergenic	not near genes	chr3R	7733454	intergenic	not near genes	chr3R	7737433	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-517
1239	chr3R	7849649	7849653	chr3R	7850816	7850820	1360	4	1167	3.5	0.5	2.0	1.3	1171	chr3R	7849649	intron	CG34384 +	chr3R	7850234	intron	CG34384 +	chr3R	7850820	intron	CG34384 +	chr3R_4_7850001	chr3R_7850001	RAL-517
1243	chr3R	8207568	8207582	chr3R	8208412	8208421	F-element	4	843	1.0	3.0	2.0	1.3	853	chr3R	8207568	intergenic	not near genes	chr3R	8207994	intergenic	not near genes	chr3R	8208421	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RAL-517
1248	chr3R	8403016	8403035	chr3R	8412182	8412201	roo	10	9164	4.0	5.0	4.5	1.8	9185	chr3R	8403016	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412201	intron	CG45263 -	chr3R_10_8405001	chr3R_8405001	RAL-517
1250	chr3R	8570480	8570510	chr3R	8575116	8575146	HMS-Beagle	11	4635	2.0	2.0	2.0	3.7	4666	chr3R	8570480	intergenic	not near genes	chr3R	8572813	intergenic	not near genes	chr3R	8575146	intergenic	not near genes	chr3R_11_8570001	chr3R_8570001	RAL-517
1251	chr3R	8601772	8601791	chr3R	8610919	8610937	roo	5	9150	4.5	3.5	4.0	1.0	9165	chr3R	8601772	intron	5-HT2B +	chr3R	8606354	intron	5-HT2B +	chr3R	8610937	intron	5-HT2B +	chr3R_5_8605001	chr3R_8605001	RAL-517
1253	chr3R	8707354	8707383	chr3R	8709795	8709824	jockey	8	2441	4.0	1.5	2.8	2.1	2470	chr3R	8707354	intergenic	not near genes	chr3R	8708589	intergenic	not near genes	chr3R	8709824	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-517
1258	chr3R	9319584	9319597	chr3R	9320018	9320032	jockey	6	434	6.0	5.5	5.8	0.9	448	chr3R	9319584	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320032	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-517
1259	chr3R	9319599	9319603	chr3R	9320009	9320031	jockey	4	426	5.0	4.5	4.8	0.7	432	chr3R	9319599	intron	CG8861 -	chr3R	9319815	intron	CG8861 -	chr3R	9320031	intron	CG8861 -	chr3R_4_9315001	chr3R_9315001	RAL-517
1260	chr3R	9361816	9361828	chr3R	9362057	9362065	pogo	4	240	1.5	1.0	1.2	1.8	249	chr3R	9361816	3` UTR	CG45050 +	chr3R	9361940	3` UTR	CG45050 +	chr3R	9362065	3` UTR	CG45050 +	chr3R_4_9360001	chr3R_9360001	RAL-517
1270	chr3R	10231795	10231813	chr3R	10237371	10237390	mdg3	6	5577	1.0	2.5	1.8	2.1	5595	chr3R	10231795	intron	CG42795 +	chr3R	10234592	intron	CG42795 +	chr3R	10237390	intron	CG42795 +	chr3R_6_10230001	chr3R_10230001	RAL-517
1293	chr3R	11379240	11379266	chr3R	11388395	11388419	roo	12	9155	3.5	3.0	3.2	2.9	9179	chr3R	11379240	intron	pros +	chr3R	11383830	intron	pros +	chr3R	11388419	intron	pros +	chr3R_12_11380001	chr3R_11380001	RAL-517
1302	chr3R	11841071	11841096	chr3R	11846253	11846287	BS	8	5190	3.0	1.5	2.2	2.5	5216	chr3R	11841071	intron	CG6959 -	chr3R	11843679	intron	CG6959 -	chr3R	11846287	intron	CG6959 -	chr3R_8_11840001	chr3R_11840001	RAL-517
1305	chr3R	11957860	11957881	chr3R	11958143	11958164	S-element	4	283	0.0	0.0	0.0	4.0	304	chr3R	11957860	intergenic	not near genes	chr3R	11958012	intergenic	not near genes	chr3R	11958164	intergenic	not near genes	chr3R_4_11955001	chr3R_11955001	RAL-517
1306	chr3R	12022883	12022914	chr3R	12025060	12025091	pogo	6	2177	1.5	3.0	2.2	1.9	2208	chr3R	12022883	intergenic	not near genes	chr3R	12023987	intergenic	not near genes	chr3R	12025091	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-517
1322	chr3R	12920160	12920183	chr3R	12925359	12925386	copia	11	5202	3.0	4.0	3.5	2.4	5226	chr3R	12920160	intron	beat-Vb +	chr3R	12922773	intron	beat-Vb +	chr3R	12925386	intron	beat-Vb +	chr3R_11_12920001	chr3R_12920001	RAL-517
1327	chr3R	13143043	13143065	chr3R	13148618	13148641	mdg3	8	5576	2.0	5.0	3.5	1.8	5598	chr3R	13143043	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_8_13145001	chr3R_13145001	RAL-517
1346	chr3R	14021641	14021660	chr3R	14023466	14023485	S-element	4	1825	4.5	1.0	2.8	1.1	1844	chr3R	14021641	intron	rdx -	chr3R	14022563	intron	rdx -	chr3R	14023485	intron	rdx -	chr3R_4_14020001	chr3R_14020001	RAL-517
1352	chr3R	14180819	14180831	chr3R	14185579	14185596	F-element	4	4764	2.0	0.0	1.0	2.0	4777	chr3R	14180819	intron	Dop1R1 -	chr3R	14183208	intron	Dop1R1 -	chr3R	14185596	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	RAL-517
1353	chr3R	14246399	14246410	chr3R	14247891	14247902	jockey	4	1494	3.0	3.5	3.2	1.0	1503	chr3R	14246399	intergenic	not near genes	chr3R	14247150	intergenic	not near genes	chr3R	14247902	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-517
1365	chr3R	15041424	15041460	chr3R	15045192	15045228	Doc	8	3768	1.0	3.0	2.0	2.7	3804	chr3R	15041424	intergenic	not near genes	chr3R	15043326	intergenic	not near genes	chr3R	15045228	intergenic	not near genes	chr3R_8_15040001	chr3R_15040001	RAL-517
1367	chr3R	15102497	15102525	chr3R	15109752	15109780	412	7	7255	3.5	0.5	2.0	2.3	7283	chr3R	15102497	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109780	intron	CG42788 -	chr3R_7_15105001	chr3R_15105001	RAL-517
1368	chr3R	15132055	15132080	chr3R	15135115	15135138	Juan	11	3059	6.0	10.0	8.0	1.2	3083	chr3R	15132055	intergenic	CG42788 -	chr3R	15133596	intergenic	not near genes	chr3R	15135138	3` UTR	CG6912 -	chr3R_11_15130001	chr3R_15130001	RAL-517
1371	chr3R	15162552	15162578	chr3R	15167319	15167344	F-element	7	4767	3.5	3.5	3.5	1.6	4792	chr3R	15162552	intron	Gyc88E +	chr3R	15164948	intron	Gyc88E +	chr3R	15167344	intron	Gyc88E +	chr3R_7_15160001	chr3R_15160001	RAL-517
1380	chr3R	15601165	15601196	chr3R	15608686	15608718	412	9	7519	4.5	3.5	4.0	1.8	7553	chr3R	15601165	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_9_15600001	chr3R_15600001	RAL-517
1381	chr3R	15618738	15618749	chr3R	15626212	15626223	blood	4	7474	2.5	3.0	2.8	1.1	7485	chr3R	15618738	intergenic	not near genes	chr3R	15622480	intergenic	not near genes	chr3R	15626223	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-517
1387	chr3R	16189411	16189441	chr3R	16189814	16189859	invader4	4	415	2.0	0.5	1.2	1.8	448	chr3R	16189411	intron	sra +	chr3R	16189635	intron	sra +	chr3R	16189859	intron	sra +	chr3R_4_16185001	chr3R_16185001	RAL-517
1393	chr3R	16756324	16756350	chr3R	16762510	16762541	diver	8	6190	3.5	3.0	3.2	1.9	6217	chr3R	16756324	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762541	intron	bxd -	chr3R_8_16755001	chr3R_16755001	RAL-517
1397	chr3R	17346700	17346715	chr3R	17348250	17348277	F-element	4	1560	2.5	3.0	2.8	1.1	1577	chr3R	17346700	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348277	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-517
1406	chr3R	17638319	17638344	chr3R	17638805	17638830	roo	5	486	2.0	2.0	2.0	1.7	511	chr3R	17638319	intron	CG43175 +	chr3R	17638574	intron	CG43175 +	chr3R	17638830	intron,intron	CG43175 +,CR45222 +	chr3R_5_17635001	chr3R_17635001	RAL-517
1410	chr3R	17925856	17925872	chr3R	17927323	17927339	hobo	7	1466	6.0	7.5	6.8	0.9	1483	chr3R	17925856	intron	cpo +	chr3R	17926598	intron	cpo +	chr3R	17927339	intron	cpo +	chr3R_7_17925001	chr3R_17925001	RAL-517
1411	chr3R	17925873	17925888	chr3R	17927317	17927355	hobo	4	1461	3.5	6.5	5.0	0.7	1482	chr3R	17925873	intron	cpo +	chr3R	17926614	intron	cpo +	chr3R	17927355	intron	cpo +	chr3R_4_17925001	chr3R_17925001	RAL-517
1412	chr3R	18032787	18032804	chr3R	18040455	18040468	opus	8	7667	0.5	1.5	1.0	4.0	7681	chr3R	18032787	intergenic	not near genes	chr3R	18036628	intergenic	not near genes	chr3R	18040468	intergenic	not near genes	chr3R_8_18035001	chr3R_18035001	RAL-517
1423	chr3R	18606503	18606532	chr3R	18610735	18610764	F-element	9	4232	2.0	1.5	1.8	3.2	4261	chr3R	18606503	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610764	intron,intron	qin +,CG14304 -	chr3R_9_18605001	chr3R_18605001	RAL-517
1429	chr3R	19136409	19136441	chr3R	19139795	19139871	Bari1	8	3400	46.5	18.0	32.2	0.2	3462	chr3R	19136409	exon	Cyp12a4 +	chr3R	19138140	intergenic	not near genes	chr3R	19139871	3` UTR	Ppcs -	chr3R_8_19135001	chr3R_19135001	RAL-517
1441	chr3R	20109539	20109571	chr3R	20114745	20114777	copia	9	5205	2.5	0.5	1.5	3.6	5238	chr3R	20109539	intergenic	not near genes	chr3R	20112158	intergenic	not near genes	chr3R	20114777	intergenic	CG10887 +	chr3R_9_20110001	chr3R_20110001	RAL-517
1442	chr3R	20156697	20156706	chr3R	20165863	20165876	roo	4	9167	2.0	2.5	2.2	1.2	9179	chr3R	20156697	intergenic	not near genes	chr3R	20161286	intergenic	not near genes	chr3R	20165876	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-517
1443	chr3R	20245271	20245305	chr3R	20248882	20248911	F-element	5	3609	0.5	0.0	0.2	4.2	3640	chr3R	20245271	3` UTR	Nlg4 +	chr3R	20247091	intergenic	not near genes	chr3R	20248911	intergenic	not near genes	chr3R_5_20245001	chr3R_20245001	RAL-517
1445	chr3R	20266517	20266547	chr3R	20272988	20273018	Burdock	6	6470	0.5	1.5	1.0	3.0	6501	chr3R	20266517	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273018	intron	cic +	chr3R_6_20265001	chr3R_20265001	RAL-517
1464	chr3R	21141677	21141705	chr3R	21150158	21150161	Tirant	5	8471	2.0	2.5	2.2	1.6	8484	chr3R	21141677	intron	SNF4Agamma +	chr3R	21145919	intron	SNF4Agamma +	chr3R	21150161	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-517
1471	chr3R	21761132	21761151	chr3R	21768509	21768513	mdg1	6	7384	2.5	3.5	3.0	1.5	7381	chr3R	21761132	exon	CG42335 +	chr3R	21764822	intron	CG42335 +	chr3R	21768513	intron	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-517
1489	chr3R	22234693	22234713	chr3R	22236012	22236031	pogo	7	1319	1.5	2.0	1.8	2.5	1338	chr3R	22234693	intron	SKIP +	chr3R	22235362	intron	SKIP +	chr3R	22236031	intron	SKIP +	chr3R_7_22235001	chr3R_22235001	RAL-517
1490	chr3R	22239489	22239499	chr3R	22248549	22248559	roo	4	9059	5.0	0.0	2.5	1.1	9070	chr3R	22239489	intron	SKIP +	chr3R	22244024	intron	SKIP +	chr3R	22248559	intron	SKIP +	chr3R_4_22240001	chr3R_22240001	RAL-517
1496	chr3R	22450544	22450574	chr3R	22453184	22453188	NOF	8	2636	3.0	2.5	2.8	2.1	2644	chr3R	22450544	intron	CG34376 +	chr3R	22451866	intron	CG34376 +	chr3R	22453188	intron	CG34376 +	chr3R_8_22450001	chr3R_22450001	RAL-517
1502	chr3R	22881199	22881219	chr3R	22884905	22884925	Doc	5	3706	2.5	2.5	2.5	1.4	3726	chr3R	22881199	intergenic	not near genes	chr3R	22883062	intergenic	not near genes	chr3R	22884925	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	RAL-517
1511	chr3R	23558405	23558423	chr3R	23560186	23560204	Bari1	4	1780	4.0	5.0	4.5	0.7	1799	chr3R	23558405	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560204	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-517
1515	chr3R	23835406	23835417	chr3R	23844556	23844567	roo	4	9149	2.0	1.0	1.5	1.6	9161	chr3R	23835406	intron	CG34355 +	chr3R	23839986	intron	CG34355 +	chr3R	23844567	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	RAL-517
1518	chr3R	24072090	24072121	chr3R	24072528	24072534	jockey	6	432	3.5	0.0	1.8	2.1	444	chr3R	24072090	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072534	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-517
1520	chr3R	24207217	24207240	chr3R	24212292	24212316	flea	11	5076	4.0	2.0	3.0	2.8	5099	chr3R	24207217	intron	twin -	chr3R	24209766	intron	twin -	chr3R	24212316	intron	twin -	chr3R_11_24205001	chr3R_24205001	RAL-517
1523	chr3R	24493286	24493310	chr3R	24493515	24493537	BS	6	229	1.5	6.5	4.0	1.2	251	chr3R	24493286	intergenic	not near genes	chr3R	24493412	intergenic	not near genes	chr3R	24493537	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-517
1525	chr3R	24730097	24730118	chr3R	24732475	24732496	Doc	6	2378	1.5	0.0	0.8	3.3	2399	chr3R	24730097	intron	tok +	chr3R	24731296	intron	tok +	chr3R	24732496	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-517
1541	chr3R	25725829	25725856	chr3R	25734989	25735016	roo	8	9160	1.5	0.5	1.0	4.0	9187	chr3R	25725829	intron	LpR2 -	chr3R	25730422	intron	LpR2 -	chr3R	25735016	intron	LpR2 -	chr3R_8_25730001	chr3R_25730001	RAL-517
1543	chr3R	25832690	25832718	chr3R	25841871	25841900	roo	7	9182	4.5	7.0	5.8	1.0	9210	chr3R	25832690	exon	alpha4GT2 +	chr3R	25837295	intron	alpha4GT2 +	chr3R	25841900	exon	alpha4GT2 +	chr3R_7_25835001	chr3R_25835001	RAL-517
1554	chr3R	26376322	26376357	chr3R	26385482	26385516	roo	5	9159	1.0	0.0	0.5	3.3	9194	chr3R	26376322	intergenic	not near genes	chr3R	26380919	intergenic	not near genes	chr3R	26385516	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-517
1557	chr3R	26558324	26558360	chr3R	26565637	26565668	Stalker4	5	7302	3.0	3.0	3.0	1.2	7344	chr3R	26558324	intron	scrib +	chr3R	26561996	intron	scrib +	chr3R	26565668	intron	scrib +	chr3R_5_26560001	chr3R_26560001	RAL-517
1558	chr3R	26642726	26642761	chr3R	26643119	26643153	jockey	6	393	5.0	4.5	4.8	1.0	427	chr3R	26642726	intergenic	not near genes	chr3R	26642940	intergenic	not near genes	chr3R	26643153	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RAL-517
1572	chr3R	27007406	27007420	chr3R	27016541	27016554	roo	4	9135	4.0	1.5	2.8	1.1	9148	chr3R	27007406	intron	RYa-R +	chr3R	27011980	intron	RYa-R +	chr3R	27016554	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	RAL-517
1579	chr3R	27140516	27140547	chr3R	27148125	27148157	412	15	7609	1.5	4.0	2.8	3.9	7641	chr3R	27140516	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148157	intron	CG6051 -	chr3R_15_27140001	chr3R_27140001	RAL-517
1582	chr3R	27342791	27342826	chr3R	27351372	27351405	Tirant	9	8580	1.5	1.5	1.5	3.6	8614	chr3R	27342791	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_9_27345001	chr3R_27345001	RAL-517
1588	chr3R	27521162	27521190	chr3R	27530371	27530399	roo	9	9209	3.0	1.5	2.2	2.8	9237	chr3R	27521162	intron	CG12885 +	chr3R	27525780	intron	CG12885 +	chr3R	27530399	intron	CG12885 +	chr3R_9_27525001	chr3R_27525001	RAL-517
1595	chr3R	27856758	27856784	chr3R	27858240	27858267	hopper2	9	1483	5.0	4.5	4.8	1.6	1509	chr3R	27856758	intron	CG34353 -	chr3R	27857512	intron	CG34353 -	chr3R	27858267	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	RAL-517
1596	chr3R	27862954	27862984	chr3R	27868259	27868288	Transpac	7	5304	2.5	2.0	2.2	2.2	5334	chr3R	27862954	intron	CG34353 -	chr3R	27865621	intron	CG34353 -	chr3R	27868288	intron	CG34353 -	chr3R_7_27865001	chr3R_27865001	RAL-517
1597	chr3R	27875700	27875728	chr3R	27882755	27882776	297	13	7054	2.0	3.0	2.5	3.7	7076	chr3R	27875700	intron	CG34353 -	chr3R	27879238	intron	CG34353 -	chr3R	27882776	intron	CG34353 -	chr3R_13_27875001	chr3R_27875001	RAL-517
1598	chr3R	28068495	28068526	chr3R	28073933	28073967	I-element	5	5441	1.0	0.5	0.8	2.8	5472	chr3R	28068495	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	RAL-517
1600	chr3R	28173672	28173688	chr3R	28181101	28181118	mdg1	6	7430	5.0	3.0	4.0	1.2	7446	chr3R	28173672	intron	CG34354 +	chr3R	28177395	intron	CG34354 +	chr3R	28181118	intron	CG34354 +	chr3R_6_28175001	chr3R_28175001	RAL-517
1602	chr3R	28253341	28253366	chr3R	28255845	28255874	jockey	6	2509	4.5	2.0	3.2	1.4	2533	chr3R	28253341	intergenic	not near genes	chr3R	28254608	intergenic	not near genes	chr3R	28255874	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-517
1603	chr3R	28302101	28302130	chr3R	28302538	28302569	jockey	10	439	3.5	6.0	4.8	1.7	468	chr3R	28302101	intergenic	not near genes	chr3R	28302335	intergenic	not near genes	chr3R	28302569	intergenic	not near genes	chr3R_10_28300001	chr3R_28300001	RAL-517
1615	chr3R	28758285	28758302	chr3R	28763902	28763919	roo	6	5617	1.5	0.0	0.8	3.3	5634	chr3R	28758285	intergenic	aqrs -	chr3R	28761102	intergenic	not near genes	chr3R	28763919	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	RAL-517
1617	chr3R	28792875	28792898	chr3R	28797970	28797992	jockey	8	5094	1.0	2.5	1.8	2.9	5117	chr3R	28792875	intergenic	not near genes	chr3R	28795434	intergenic	not near genes	chr3R	28797992	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	RAL-517
1625	chr3R	29079378	29079402	chr3R	29080750	29080774	NOF	8	1372	5.5	2.5	4.0	1.6	1396	chr3R	29079378	intron	CG11873 +	chr3R	29080076	intron	CG11873 +	chr3R	29080774	intron	CG11873 +	chr3R_8_29080001	chr3R_29080001	RAL-517
1630	chr3R	29319826	29319843	chr3R	29320145	29320162	jockey	4	319	0.5	3.0	1.8	1.4	336	chr3R	29319826	intergenic	Cnx99A -	chr3R	29319994	intergenic	Cnx99A -	chr3R	29320162	intergenic	not near genes	chr3R_4_29315001	chr3R_29315001	RAL-517
1634	chr3R	29406622	29406645	chr3R	29407906	29407931	jockey	8	1283	3.5	5.0	4.2	1.5	1309	chr3R	29406622	intron	Ptp99A +	chr3R	29407276	intron	Ptp99A +	chr3R	29407931	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-517
1637	chr3R	29738267	29738299	chr3R	29739734	29739764	hobo	6	1466	1.0	2.5	1.8	2.1	1497	chr3R	29738267	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739764	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-517
1639	chr3R	29760360	29760381	chr3R	29761561	29761582	pogo	5	1199	3.5	0.0	1.8	1.8	1222	chr3R	29760360	intergenic	not near genes	chr3R	29760971	intergenic	not near genes	chr3R	29761582	intergenic	not near genes	chr3R_5_29760001	chr3R_29760001	RAL-517
1641	chr3R	29882034	29882045	chr3R	29891191	29891202	roo	4	9157	4.5	4.0	4.2	0.8	9168	chr3R	29882034	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891202	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-517
1647	chr3R	30084850	30084883	chr3R	30086317	30086350	hobo	11	1466	0.5	1.0	0.8	6.1	1500	chr3R	30084850	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086350	intron	sima +	chr3R_11_30085001	chr3R_30085001	RAL-517
1650	chr3R	30238761	30238792	chr3R	30239925	30239957	1360	7	1164	3.0	0.0	1.5	2.8	1196	chr3R	30238761	intergenic	not near genes	chr3R	30239359	intergenic	not near genes	chr3R	30239957	intergenic	not near genes	chr3R_7_30235001	chr3R_30235001	RAL-517
1654	chr3R	30396218	30396247	chr3R	30404484	30404513	roo	9	8266	3.5	2.0	2.8	2.4	8295	chr3R	30396218	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404513	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RAL-517
1657	chr3R	30480490	30480510	chr3R	30482958	30482977	jockey	7	2466	2.5	6.0	4.2	1.3	2487	chr3R	30480490	intron	PH4alphaEFB +	chr3R	30481734	intron	PH4alphaEFB +	chr3R	30482977	intron	PH4alphaEFB +	chr3R_7_30480001	chr3R_30480001	RAL-517
1663	chr3R	30818815	30818844	chr3R	30820377	30820409	1360	7	1564	4.5	1.0	2.8	1.8	1594	chr3R	30818815	intron	cindr +	chr3R	30819612	intron	cindr +	chr3R	30820409	intron	cindr +	chr3R_7_30815001	chr3R_30815001	RAL-517
1673	chr3R	31074228	31074258	chr3R	31081828	31081857	springer	5	7600	1.5	4.0	2.8	1.3	7629	chr3R	31074228	intron	Sox100B +	chr3R	31078042	intron	Sox100B +	chr3R	31081857	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-517
1677	chr3R	31279377	31279394	chr3R	31285568	31285584	diver	5	6189	7.0	4.5	5.8	0.7	6207	chr3R	31279377	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285584	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-517
1678	chr3R	31279396	31279403	chr3R	31285565	31285594	diver	5	6186	6.5	4.5	5.5	0.8	6198	chr3R	31279396	intergenic	not near genes	chr3R	31282495	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-517
1679	chr3R	31413103	31413123	chr3R	31418303	31418323	copia	6	5200	3.5	0.5	2.0	2.0	5220	chr3R	31413103	intron	Gprk2 +	chr3R	31415713	intron	Gprk2 +	chr3R	31418323	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-517
1686	chr3R	31691540	31691560	chr3R	31696306	31696323	Doc	12	4763	4.0	7.0	5.5	1.8	4783	chr3R	31691540	intergenic	not near genes	chr3R	31693932	intergenic	not near genes	chr3R	31696323	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	RAL-517
1697	chr3R	31997999	31998025	chr3R	32005462	32005495	blood	8	7468	2.0	3.0	2.5	2.3	7496	chr3R	31997999	intron	heph -	chr3R	32001747	intron	heph -	chr3R	32005495	intron	heph -	chr3R_8_32000001	chr3R_32000001	RAL-517
1701	chr4	671605	671632	chr4	680188	680215	Tirant	10	8583	3.0	4.0	3.5	2.2	8610	chr4	671605	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680215	intron	CG11360 +	chr4_10_675001	chr4_675001	RAL-517
1705	chrX	318474	318499	chrX	323555	323585	flea	5	5085	2.0	2.5	2.2	1.6	5111	chrX	318474	intron,intron	CG3777 +,CG32816 -	chrX	321030	intron,intron	CG3777 +,CG32816 -	chrX	323585	intron,intron	CG3777 +,CG32816 -	chrX_5_320001	chrX_320001	RAL-517
1706	chrX	428430	428452	chrX	434615	434637	3S18	4	6185	3.0	3.0	3.0	1.0	6207	chrX	428430	intron	CG32816 -	chrX	431534	intron	CG32816 -	chrX	434637	intron	CG32816 -	chrX_4_430001	chrX_430001	RAL-517
1710	chrX	551427	551450	chrX	558988	559010	412	5	7561	2.5	3.0	2.8	1.3	7583	chrX	551427	intron	Appl +	chrX	555218	intron	Appl +	chrX	559010	intron	Appl +	chrX_5_555001	chrX_555001	RAL-517
1716	chrX	827605	827623	chrX	835393	835406	roo	5	7789	2.5	0.5	1.5	2.0	7801	chrX	827605	intron	CG43867 -	chrX	831506	intron	CG43867 -	chrX	835406	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-517
1719	chrX	906703	906731	chrX	908492	908519	S-element	8	1788	3.5	2.5	3.0	2.0	1816	chrX	906703	intron	CG43867 -	chrX	907611	intron	CG43867 -	chrX	908519	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-517
1724	chrX	1357779	1357799	chrX	1367949	1367969	Doc	6	10170	3.0	1.5	2.2	1.9	10190	chrX	1357779	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367969	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-517
1725	chrX	1518039	1518061	chrX	1523441	1523461	jockey	5	5401	4.0	1.0	2.5	1.4	5422	chrX	1518039	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523461	intergenic	not near genes	chrX_5_1520001	chrX_1520001	RAL-517
1726	chrX	1627972	1628001	chrX	1635440	1635469	gtwin	5	7467	3.0	2.5	2.8	1.3	7497	chrX	1627972	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635469	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-517
1727	chrX	2399836	2399863	chrX	2408189	2408215	roo	11	8350	5.5	2.5	4.0	2.2	8379	chrX	2399836	intergenic	not near genes	chrX	2404026	intergenic	not near genes	chrX	2408215	intergenic	not near genes	chrX_11_2400001	chrX_2400001	RAL-517
1733	chrX	2844899	2844929	chrX	2852309	2852339	mdg1	6	7410	3.0	2.5	2.8	1.6	7440	chrX	2844899	intron	kirre +	chrX	2848619	intron	kirre +	chrX	2852339	intron	kirre +	chrX_6_2845001	chrX_2845001	RAL-517
1738	chrX	3493091	3493107	chrX	3502249	3502266	roo	5	9159	4.5	0.5	2.5	1.4	9175	chrX	3493091	intron,intron	CR44999 +,Gas8 -	chrX	3497678	intron,intron	CR44999 +,Gas8 -	chrX	3502266	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	RAL-517
1739	chrX	3597550	3597584	chrX	3619718	3619737	roo	12	22167	1.5	1.0	1.2	5.5	22187	chrX	3597550	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619737	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	RAL-517
1740	chrX	3726761	3726794	chrX	3730157	3730183	NOF	4	3390	1.5	0.5	1.0	2.0	3422	chrX	3726761	intron	tlk +	chrX	3728472	intron	tlk +	chrX	3730183	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-517
1743	chrX	3986869	3986894	chrX	3994502	3994527	412	10	7633	2.5	3.5	3.0	2.5	7658	chrX	3986869	intergenic	not near genes	chrX	3990698	intergenic	not near genes	chrX	3994527	intergenic	not near genes	chrX_10_3990001	chrX_3990001	RAL-517
1747	chrX	4157898	4157920	chrX	4164951	4164973	297	4	7053	1.0	2.0	1.5	1.6	7075	chrX	4157898	intron	Fas2 -	chrX	4161436	intron	Fas2 -	chrX	4164973	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-517
1750	chrX	4700392	4700408	chrX	4700735	4700751	jockey	6	343	3.0	3.0	3.0	1.5	359	chrX	4700392	3` UTR	ctp +	chrX	4700572	3` UTR	ctp +	chrX	4700751	3` UTR	ctp +	chrX_6_4700001	chrX_4700001	RAL-517
1751	chrX	4731814	4731830	chrX	4736907	4736923	jockey	4	5093	6.5	3.5	5.0	0.7	5109	chrX	4731814	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736923	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-517
1752	chrX	4792392	4792409	chrX	4792825	4792841	jockey	6	433	1.5	4.0	2.8	1.6	449	chrX	4792392	intergenic	not near genes	chrX	4792616	intergenic	not near genes	chrX	4792841	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-517
1753	chrX	4827996	4827999	chrX	4835339	4835349	Stalker4	4	7359	1.5	2.0	1.8	1.4	7353	chrX	4827996	intergenic	not near genes	chrX	4831672	intergenic	not near genes	chrX	4835349	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-517
1754	chrX	4990043	4990076	chrX	4997257	4997290	roo	6	7214	2.0	2.0	2.0	2.0	7247	chrX	4990043	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997290	intron	CR44833 -	chrX_6_4990001	chrX_4990001	RAL-517
1755	chrX	5096282	5096306	chrX	5103846	5103871	springer	5	7562	3.5	3.5	3.5	1.1	7589	chrX	5096282	intron,intron	CG15465 +,rg +	chrX	5100076	intron,intron	CG15465 +,rg +	chrX	5103871	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	RAL-517
1758	chrX	5338709	5338732	chrX	5339962	5339985	jockey	4	1253	1.0	2.0	1.5	1.6	1276	chrX	5338709	intergenic	not near genes	chrX	5339347	intergenic	not near genes	chrX	5339985	intergenic	SK +	chrX_4_5335001	chrX_5335001	RAL-517
1766	chrX	5883815	5883840	chrX	5884056	5884081	pogo	5	237	1.5	2.5	2.0	1.7	266	chrX	5883815	intron	CR45668 -	chrX	5883948	intron	CR45668 -	chrX	5884081	intron	CR45668 -	chrX_5_5880001	chrX_5880001	RAL-517
1767	chrX	5884162	5884190	chrX	5884403	5884431	pogo	7	239	3.5	2.5	3.0	1.8	269	chrX	5884162	intron	CR45668 -	chrX	5884296	intron	CR45668 -	chrX	5884431	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-517
1771	chrX	6171586	6171613	chrX	6179019	6179046	Quasimodo	4	7433	3.0	2.0	2.5	1.1	7460	chrX	6171586	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179046	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-517
1774	chrX	6335225	6335242	chrX	6337735	6337752	Tirant	7	2510	1.0	5.0	3.0	1.8	2527	chrX	6335225	intergenic	not near genes	chrX	6336488	intergenic	not near genes	chrX	6337752	intergenic	CG3842 +	chrX_7_6335001	chrX_6335001	RAL-517
1776	chrX	6392885	6392897	chrX	6397633	6397662	Doc	4	4760	2.0	1.5	1.8	1.4	4777	chrX	6392885	intergenic	not near genes	chrX	6395274	intergenic	not near genes	chrX	6397662	intergenic	not near genes	chrX_4_6395001	chrX_6395001	RAL-517
1777	chrX	6562817	6562846	chrX	6571298	6571328	Tirant	14	8479	4.5	4.5	4.5	2.5	8511	chrX	6562817	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571328	intron	CG34417 +	chrX_14_6565001	chrX_6565001	RAL-517
1779	chrX	6605484	6605502	chrX	6608505	6608524	Burdock	7	3021	0.5	4.5	2.5	2.0	3040	chrX	6605484	intron	pigs +	chrX	6607004	intron	pigs +	chrX	6608524	intron	pigs +	chrX_7_6605001	chrX_6605001	RAL-517
1785	chrX	7125244	7125279	chrX	7134403	7134418	roo	9	9156	1.0	2.5	1.8	3.2	9174	chrX	7125244	intergenic	not near genes	chrX	7129831	intergenic	not near genes	chrX	7134418	intergenic	not near genes	chrX_9_7125001	chrX_7125001	RAL-517
1788	chrX	7702903	7702929	chrX	7703342	7703368	jockey	11	438	3.0	2.5	2.8	2.9	465	chrX	7702903	intron	CHES-1-like -	chrX	7703136	intron	CHES-1-like -	chrX	7703368	intron	CHES-1-like -	chrX_11_7700001	chrX_7700001	RAL-517
1791	chrX	8031427	8031458	chrX	8035736	8035766	Juan	9	4309	3.0	4.0	3.5	2.0	4339	chrX	8031427	intergenic	not near genes	chrX	8033596	intergenic	not near genes	chrX	8035766	3` UTR	CG2233 -	chrX_9_8030001	chrX_8030001	RAL-517
1797	chrX	8745852	8745860	chrX	8748173	8748187	INE-1	4	2326	8.0	10.5	9.2	0.4	2335	chrX	8745852	intergenic	not near genes	chrX	8747020	intergenic	not near genes	chrX	8748187	intergenic	not near genes	chrX_4_8745001	chrX_8745001	RAL-517
1799	chrX	8922327	8922363	chrX	8922760	8922771	jockey	12	428	4.5	3.5	4.0	2.4	444	chrX	8922327	intron	rdgA +	chrX	8922549	intron	rdgA +	chrX	8922771	intron	rdgA +	chrX_12_8920001	chrX_8920001	RAL-517
1800	chrX	8948759	8948783	chrX	8956269	8956293	roo	6	7510	1.0	1.5	1.2	2.7	7534	chrX	8948759	intron	rdgA +	chrX	8952526	intron	rdgA +	chrX	8956293	intron	rdgA +	chrX_6_8950001	chrX_8950001	RAL-517
1803	chrX	9508128	9508167	chrX	9509646	9509685	jockey	13	1518	0.5	2.5	1.5	5.2	1557	chrX	9508128	intron	CG32700 -	chrX	9508906	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_13_9505001	chrX_9505001	RAL-517
1804	chrX	9575798	9575817	chrX	9576122	9576140	mdg3	9	323	4.5	7.0	5.8	1.3	342	chrX	9575798	intron,exon	CG32699 -,CG42395 -	chrX	9575969	intron,intron	CG32699 -,CG42395 -	chrX	9576140	intron,5` UTR	CG32699 -,CG42395 -	chrX_9_9575001	chrX_9575001	RAL-517
1813	chrX	10550853	10550885	chrX	10552320	10552347	hobo	7	1463	3.0	0.5	1.8	2.5	1494	chrX	10550853	intron	spri -	chrX	10551600	intron	spri -	chrX	10552347	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-517
1814	chrX	10686053	10686078	chrX	10691190	10691215	roo	5	5137	1.5	2.0	1.8	1.8	5162	chrX	10686053	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691215	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-517
1819	chrX	11312067	11312088	chrX	11319419	11319441	Stalker2	4	7352	1.0	3.0	2.0	1.3	7374	chrX	11312067	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319441	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-517
1820	chrX	11633423	11633449	chrX	11640476	11640503	297	5	7054	2.5	2.0	2.2	1.6	7080	chrX	11633423	intron	Ptp10D +	chrX	11636963	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-517
1825	chrX	12168140	12168171	chrX	12173582	12173606	I-element	7	5439	3.0	3.0	3.0	1.8	5466	chrX	12168140	intron	Ten-a +	chrX	12170873	intron	Ten-a +	chrX	12173606	intron	Ten-a +	chrX_7_12170001	chrX_12170001	RAL-517
1832	chrX	13429463	13429490	chrX	13430612	13430639	jockey	8	1149	3.5	1.5	2.5	2.3	1176	chrX	13429463	intergenic	not near genes	chrX	13430051	intergenic	not near genes	chrX	13430639	intergenic	not near genes	chrX_8_13430001	chrX_13430001	RAL-517
1833	chrX	13463646	13463673	chrX	13469223	13469250	mdg3	8	5577	1.0	1.0	1.0	4.0	5604	chrX	13463646	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469250	intron	Neto +	chrX_8_13465001	chrX_13465001	RAL-517
1835	chrX	14105025	14105055	chrX	14114176	14114203	roo	9	9150	3.5	4.5	4.0	1.8	9178	chrX	14105025	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114203	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-517
1836	chrX	14157598	14157607	chrX	14163255	14163264	297	4	5657	1.0	0.5	0.8	2.2	5666	chrX	14157598	intergenic	not near genes	chrX	14160431	intergenic	not near genes	chrX	14163264	intergenic	not near genes	chrX_4_14160001	chrX_14160001	RAL-517
1842	chrX	14636467	14636491	chrX	14641907	14641932	I-element	8	5441	1.5	1.0	1.2	3.6	5465	chrX	14636467	intron	NetA -	chrX	14639200	intron	NetA -	chrX	14641932	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-517
1843	chrX	14778026	14778063	chrX	14782823	14782860	Doc	9	4794	4.5	2.5	3.5	2.0	4834	chrX	14778026	intergenic	CG5347 +	chrX	14780443	intergenic	not near genes	chrX	14782860	intergenic	Ag5r2 -	chrX_9_14780001	chrX_14780001	RAL-517
1845	chrX	14818785	14818797	chrX	14823989	14824001	copia	4	5202	1.5	5.0	3.2	1.0	5216	chrX	14818785	intron	rut -	chrX	14821393	intron	rut -	chrX	14824001	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-517
1846	chrX	14936857	14936873	chrX	14946114	14946130	roo	5	9257	4.0	0.5	2.2	1.6	9273	chrX	14936857	intron	pdgy -	chrX	14941494	intron	pdgy -	chrX	14946130	intron	pdgy -	chrX_5_14940001	chrX_14940001	RAL-517
1849	chrX	15273708	15273735	chrX	15274869	15274871	1360	7	1158	4.5	5.0	4.8	1.2	1163	chrX	15273708	intergenic	not near genes	chrX	15274290	intergenic	not near genes	chrX	15274871	intergenic	not near genes	chrX_7_15270001	chrX_15270001	RAL-517
1851	chrX	15413050	15413087	chrX	15417352	15417388	Juan	7	4300	1.5	5.0	3.2	1.7	4338	chrX	15413050	intron	Cngl -	chrX	15415219	intron	Cngl -	chrX	15417388	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-517
1852	chrX	15435687	15435701	chrX	15436120	15436134	rover	7	433	3.0	4.0	3.5	1.6	447	chrX	15435687	intron	Cngl -	chrX	15435910	intron	Cngl -	chrX	15436134	intron	Cngl -	chrX_7_15435001	chrX_15435001	RAL-517
1860	chrX	16492647	16492672	chrX	16498222	16498249	mdg3	9	5577	3.0	1.5	2.2	2.8	5602	chrX	16492647	intron	para -	chrX	16495448	intron	para -	chrX	16498249	intron	para -	chrX_9_16495001	chrX_16495001	RAL-517
1866	chrX	16936009	16936027	chrX	16936427	16936445	jockey	5	418	4.0	2.0	3.0	1.2	436	chrX	16936009	intron	CG4928 +	chrX	16936227	intron	CG4928 +	chrX	16936445	intron	CG4928 +	chrX_5_16935001	chrX_16935001	RAL-517
1870	chrX	17195206	17195223	chrX	17200292	17200309	flea	7	5086	6.0	2.0	4.0	1.4	5103	chrX	17195206	3` UTR	baz +	chrX	17197758	3` UTR	baz +	chrX	17200309	3` UTR	baz +	chrX_7_17195001	chrX_17195001	RAL-517
1880	chrX	18194069	18194104	chrX	18194604	18194638	BS	6	535	0.5	3.0	1.8	2.1	569	chrX	18194069	intron	Frq2 +	chrX	18194354	intron	Frq2 +	chrX	18194638	intron	Frq2 +	chrX_6_18190001	chrX_18190001	RAL-517
1883	chrX	18429496	18429512	chrX	18434807	18434823	Transpac	4	5310	4.0	3.5	3.8	0.8	5327	chrX	18429496	intergenic	not near genes	chrX	18432160	intergenic	not near genes	chrX	18434823	intergenic	not near genes	chrX_4_18430001	chrX_18430001	RAL-517
1890	chrX	19060412	19060435	chrX	19065196	19065219	Doc	4	4784	2.5	3.0	2.8	1.1	4807	chrX	19060412	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065219	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-517
1893	chrX	19356999	19357010	chrX	19358440	19358451	NOF	4	1441	1.5	0.0	0.8	2.2	1452	chrX	19356999	intron	kek5 +	chrX	19357725	intron	kek5 +	chrX	19358451	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-517
1894	chrX	19380157	19380182	chrX	19380398	19380423	pogo	4	241	4.0	1.5	2.8	1.1	266	chrX	19380157	intron	kek5 +	chrX	19380290	intron	kek5 +	chrX	19380423	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-517
1895	chrX	19472130	19472160	chrX	19472700	19472709	jockey	14	566	2.0	2.5	2.2	4.4	579	chrX	19472130	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472709	intergenic	not near genes	chrX_14_19470001	chrX_19470001	RAL-517
1898	chrX	19710077	19710101	chrX	19711863	19711887	S-element	9	1785	2.5	6.0	4.2	1.7	1810	chrX	19710077	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711887	intron	meso18E -	chrX_9_19710001	chrX_19710001	RAL-517
1906	chrX	20377326	20377347	chrX	20378785	20378814	hobo	4	1465	2.0	5.5	3.8	0.8	1488	chrX	20377326	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378814	intergenic	not near genes	chrX_4_20375001	chrX_20375001	RAL-517
1912	chrX	20940719	20940754	chrX	20942188	20942217	hobo	11	1468	2.5	4.5	3.5	2.4	1498	chrX	20940719	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942217	intergenic	not near genes	chrX_11_20940001	chrX_20940001	RAL-517
1914	chrX	21086141	21086163	chrX	21087170	21087189	jockey	7	1029	1.5	2.0	1.8	2.5	1048	chrX	21086141	intergenic	not near genes	chrX	21086665	intergenic	not near genes	chrX	21087189	intergenic	not near genes	chrX_7_21085001	chrX_21085001	RAL-517
1915	chrX	21254652	21254673	chrX	21255568	21255589	hopper2	6	916	1.5	0.0	0.8	3.3	937	chrX	21254652	intron	CG32521 -	chrX	21255120	intron	CG32521 -	chrX	21255589	intron	CG32521 -	chrX_6_21255001	chrX_21255001	RAL-517
1920	chrX	21458693	21458726	chrX	21464129	21464161	Ivk	6	5436	3.0	3.0	3.0	1.5	5468	chrX	21458693	intergenic	not near genes	chrX	21461427	intergenic	not near genes	chrX	21464161	intergenic	not near genes	chrX_6_21460001	chrX_21460001	RAL-517
1926	chrX	22522637	22522660	chrX	22525457	22525469	NOF	4	2816	2.0	0.5	1.2	1.8	2832	chrX	22522637	intron	CG17600 +	chrX	22524053	intron	CG17600 +	chrX	22525469	intron	CG17600 +	chrX_4_22520001	chrX_22520001	RAL-517
1928	chrX	22697495	22697523	chrX	22701792	22701820	Juan	9	4297	2.0	2.5	2.2	2.8	4325	chrX	22697495	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_9_22695001	chrX_22695001	RAL-517
1930	chrX	22771504	22771537	chrX	22774795	22774828	297	11	3290	2.0	2.0	2.0	3.7	3324	chrX	22771504	intron	CR44997 +	chrX	22773166	intron	CR44997 +	chrX	22774828	intron	CR44997 +	chrX_11_22770001	chrX_22770001	RAL-517
1933	chrX	22811993	22812002	chrX	22816765	22816774	F-element	4	4772	3.5	2.0	2.8	1.1	4781	chrX	22811993	intergenic	CG12446 -	chrX	22814384	intergenic	not near genes	chrX	22816774	intergenic	not near genes	chrX_4_22810001	chrX_22810001	RAL-517
1935	chrX	22987106	22987130	chrX	22989765	22989789	Burdock	4	2659	1.0	1.5	1.2	1.8	2683	chrX	22987106	intron,intron	stnA -,stnB -	chrX	22988448	intron,intron	stnA -,stnB -	chrX	22989789	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	RAL-517
1937	chrX	22996318	22996336	chrX	23003549	23003568	roo	5	7231	3.0	5.0	4.0	1.0	7250	chrX	22996318	intron,intron	stnA -,stnB -	chrX	22999943	intron,intron	stnA -,stnB -	chrX	23003568	intron,intron	stnA -,stnB -	chrX_5_22995001	chrX_22995001	RAL-517
1938	chrX	23036381	23036407	chrX	23037782	23037808	pogo	4	1401	3.5	1.0	2.2	1.2	1427	chrX	23036381	intron	CG12061 +	chrX	23037094	intron	CG12061 +	chrX	23037808	intron	CG12061 +	chrX_4_23035001	chrX_23035001	RAL-517
1942	chrY	1431368	1431372	chrY	1447404	1447408	Doc	4	16036	3.0	3.0	3.0	1.0	16040	chrY	1431368	intergenic	not near genes	chrY	1439388	intergenic	not near genes	chrY	1447408	intergenic	not near genes	chrY_4_1435001	chrY_1435001	RAL-517