SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47465	47488	chr2L	52566	52593	jockey	7	5104	5.0	5.0	5.0	1.2	5128	chr2L	47465	intron	Cda5 -	chr2L	50029	intron	Cda5 -	chr2L	52593	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-509
4	chr2L	347886	347915	chr2L	355386	355415	blood	7	7500	1.5	2.5	2.0	2.3	7529	chr2L	347886	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355415	3` UTR	Plc21C +	chr2L_7_350001	chr2L_350001	RAL-509
8	chr2L	686918	686949	chr2L	695957	695989	roo	14	9037	3.0	2.5	2.8	3.7	9071	chr2L	686918	intron	ds -	chr2L	691454	intron	ds -	chr2L	695989	intron	ds -	chr2L_14_690001	chr2L_690001	RAL-509
12	chr2L	770466	770487	chr2L	772247	772267	Bari1	6	1781	2.0	2.0	2.0	2.0	1801	chr2L	770466	intergenic	not near genes	chr2L	771366	intergenic	not near genes	chr2L	772267	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-509
21	chr2L	1220138	1220161	chr2L	1227603	1227627	blood	10	7466	1.5	4.0	2.8	2.6	7489	chr2L	1220138	intron	CG42329 +	chr2L	1223882	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_10_1220001	chr2L_1220001	RAL-509
25	chr2L	1570693	1570716	chr2L	1573564	1573588	F-element	8	2872	6.5	6.5	6.5	1.1	2895	chr2L	1570693	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573588	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-509
29	chr2L	1678980	1679006	chr2L	1686445	1686471	blood	8	7465	1.5	3.5	2.5	2.3	7491	chr2L	1678980	intron	chinmo +	chr2L	1682726	intron	chinmo +	chr2L	1686471	intron	chinmo +	chr2L_8_1680001	chr2L_1680001	RAL-509
30	chr2L	1711354	1711382	chr2L	1711678	1711703	mdg3	8	322	3.5	4.5	4.0	1.6	349	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711703	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-509
36	chr2L	2100381	2100395	chr2L	2109532	2109546	roo	9	9151	3.5	5.5	4.5	1.6	9165	chr2L	2100381	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-509
37	chr2L	2100396	2100408	chr2L	2109528	2109559	roo	8	9147	2.5	5.0	3.8	1.7	9163	chr2L	2100396	intron	dpr3 -	chr2L	2104978	intron	dpr3 -	chr2L	2109559	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	RAL-509
46	chr2L	2661219	2661233	chr2L	2663038	2663068	I-element	6	1831	1.5	1.5	1.5	2.4	1849	chr2L	2661219	intergenic	not near genes	chr2L	2662144	intergenic	not near genes	chr2L	2663068	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	RAL-509
53	chr2L	3073029	3073065	chr2L	3078232	3078267	copia	16	5203	3.5	5.0	4.2	3.1	5238	chr2L	3073029	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078267	intron	toc -	chr2L_16_3075001	chr2L_3075001	RAL-509
61	chr2L	3649792	3649805	chr2L	3654994	3655007	copia	4	5201	0.5	2.5	1.5	1.6	5215	chr2L	3649792	intron	for -	chr2L	3652400	intron	for -	chr2L	3655007	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-509
75	chr2L	4601703	4601733	chr2L	4609144	4609174	mdg1	12	7441	3.0	3.0	3.0	3.0	7471	chr2L	4601703	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609174	intron	dp -	chr2L_12_4605001	chr2L_4605001	RAL-509
79	chr2L	4918167	4918189	chr2L	4923238	4923262	jockey	4	5072	4.0	2.5	3.2	1.0	5095	chr2L	4918167	intron	hoe1 -	chr2L	4920714	intron	hoe1 -	chr2L	4923262	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-509
87	chr2L	5342776	5342785	chr2L	5345156	5345165	Doc	5	2380	4.0	5.0	4.5	0.9	2389	chr2L	5342776	intergenic	not near genes	chr2L	5343970	intergenic	not near genes	chr2L	5345165	intergenic	not near genes	chr2L_5_5340001	chr2L_5340001	RAL-509
97	chr2L	5827715	5827740	chr2L	5836723	5836725	roo	11	9005	3.5	3.0	3.2	2.6	9010	chr2L	5827715	intron	TrissinR +	chr2L	5832220	intron	TrissinR +	chr2L	5836725	intron	TrissinR +	chr2L_11_5830001	chr2L_5830001	RAL-509
103	chr2L	6363160	6363182	chr2L	6366080	6366104	Burdock	7	2921	2.0	4.0	3.0	1.8	2944	chr2L	6363160	intergenic	not near genes	chr2L	6364632	intergenic	not near genes	chr2L	6366104	intergenic	not near genes	chr2L_7_6360001	chr2L_6360001	RAL-509
104	chr2L	6426859	6426886	chr2L	6445119	6445146	roo	5	18259	3.0	3.5	3.2	1.2	18287	chr2L	6426859	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445146	exon	CG9527 -	chr2L_5_6435001	chr2L_6435001	RAL-509
111	chr2L	6876781	6876798	chr2L	6882971	6882989	diver	5	6189	6.5	5.5	6.0	0.7	6208	chr2L	6876781	intron	Nlg2 +	chr2L	6879885	intron	Nlg2 +	chr2L	6882989	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-509
118	chr2L	7343325	7343350	chr2L	7350441	7350466	roo	9	7114	5.5	5.0	5.2	1.5	7141	chr2L	7343325	intron	Wnt6 +	chr2L	7346896	intron	Wnt6 +	chr2L	7350466	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	RAL-509
124	chr2L	7959041	7959072	chr2L	7960451	7960483	pogo	6	1410	2.5	4.0	3.2	1.4	1442	chr2L	7959041	intron	Snoo -	chr2L	7959762	intron	Snoo -	chr2L	7960483	intron	Snoo -	chr2L_6_7955001	chr2L_7955001	RAL-509
125	chr2L	7977092	7977108	chr2L	7984067	7984083	297	4	6974	3.5	2.0	2.8	1.1	6991	chr2L	7977092	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984083	intron,5` UTR	Snoo -,CG7231 +	chr2L_4_7980001	chr2L_7980001	RAL-509
126	chr2L	8013615	8013633	chr2L	8018820	8018838	copia	4	5205	2.0	0.0	1.0	2.0	5223	chr2L	8013615	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-509
136	chr2L	8723113	8723148	chr2L	8731490	8731525	Tirant	10	8377	2.0	3.5	2.8	2.6	8412	chr2L	8723113	intron	raw -	chr2L	8727319	intron	raw -	chr2L	8731525	intron	raw -	chr2L_10_8725001	chr2L_8725001	RAL-509
152	chr2L	9973725	9973756	chr2L	9980843	9980875	HMS-Beagle	9	7117	5.5	5.0	5.2	1.5	7150	chr2L	9973725	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980875	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	RAL-509
162	chr2L	10156324	10156354	chr2L	10163790	10163822	blood	14	7469	4.0	2.0	3.0	3.5	7498	chr2L	10156324	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160073	intron	CG44153 -	chr2L	10163822	intron	CG44153 -	chr2L_14_10160001	chr2L_10160001	RAL-509
169	chr2L	10592858	10592875	chr2L	10600518	10600537	opus	4	7662	0.0	5.0	2.5	1.1	7679	chr2L	10592858	intron	Trim9 +	chr2L	10596698	intron	Trim9 +	chr2L	10600537	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-509
173	chr2L	10862843	10862872	chr2L	10864457	10864485	Rt1c	10	1612	6.5	3.5	5.0	1.7	1642	chr2L	10862843	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864485	3` UTR	CR43807 -	chr2L_10_10860001	chr2L_10860001	RAL-509
175	chr2L	10946961	10946977	chr2L	10956176	10956190	roo	7	9215	2.0	7.5	4.8	1.2	9229	chr2L	10946961	intron	dpr2 -	chr2L	10951576	intron	dpr2 -	chr2L	10956190	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-509
184	chr2L	11563645	11563667	chr2L	11568849	11568871	copia	10	5204	3.5	2.5	3.0	2.5	5226	chr2L	11563645	intergenic	not near genes	chr2L	11566258	intergenic	not near genes	chr2L	11568871	intergenic	not near genes	chr2L_10_11565001	chr2L_11565001	RAL-509
187	chr2L	11614054	11614086	chr2L	11615546	11615567	hopper2	8	1490	0.5	2.5	1.5	3.2	1513	chr2L	11614054	intron	kek2 +	chr2L	11614810	intron	kek2 +	chr2L	11615567	intron	kek2 +	chr2L_8_11610001	chr2L_11610001	RAL-509
190	chr2L	11713511	11713540	chr2L	11720976	11721007	blood	7	7467	4.0	3.5	3.8	1.5	7496	chr2L	11713511	intergenic	not near genes	chr2L	11717259	intergenic	not near genes	chr2L	11721007	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-509
201	chr2L	12558320	12558353	chr2L	12565448	12565482	HMS-Beagle	10	7129	2.5	1.0	1.8	3.6	7162	chr2L	12558320	intergenic	not near genes	chr2L	12561901	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_10_12560001	chr2L_12560001	RAL-509
203	chr2L	12731056	12731088	chr2L	12735823	12735855	F-element	5	4767	0.0	4.5	2.2	1.6	4799	chr2L	12731056	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735855	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-509
205	chr2L	12763863	12763870	chr2L	12764063	12764070	BS	4	200	0.0	0.5	0.2	3.3	207	chr2L	12763863	intergenic	not near genes	chr2L	12763966	intergenic	not near genes	chr2L	12764070	intergenic	not near genes	chr2L_4_12760001	chr2L_12760001	RAL-509
206	chr2L	12791601	12791615	chr2L	12795276	12795290	F-element	5	3675	3.5	0.0	1.8	1.8	3689	chr2L	12791601	intergenic	not near genes	chr2L	12793446	intergenic	not near genes	chr2L	12795290	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	RAL-509
210	chr2L	12861718	12861724	chr2L	12863175	12863183	hobo	5	1461	4.0	7.5	5.8	0.7	1465	chr2L	12861718	intergenic	not near genes	chr2L	12862450	intergenic	not near genes	chr2L	12863183	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	RAL-509
212	chr2L	12933853	12933883	chr2L	12941319	12941350	blood	8	7466	2.5	2.0	2.2	2.5	7497	chr2L	12933853	intergenic	not near genes	chr2L	12937602	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	RAL-509
218	chr2L	13405647	13405680	chr2L	13410444	13410477	Doc	17	4797	3.0	1.5	2.2	5.3	4830	chr2L	13405647	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410477	intron	CG7110 +	chr2L_17_13405001	chr2L_13405001	RAL-509
219	chr2L	13449469	13449493	chr2L	13456904	13456929	Quasimodo	8	7436	1.0	5.5	3.2	1.9	7460	chr2L	13449469	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453199	intron	CG42784 +	chr2L	13456929	intron	CG42784 +	chr2L_8_13450001	chr2L_13450001	RAL-509
220	chr2L	13481445	13481474	chr2L	13482052	13482081	jockey	10	607	4.5	5.5	5.0	1.7	636	chr2L	13481445	intron	CG42784 +	chr2L	13481763	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_10_13480001	chr2L_13480001	RAL-509
227	chr2L	13761806	13761834	chr2L	13762917	13762945	Doc	10	1108	6.0	2.5	4.2	1.9	1139	chr2L	13761806	intron	TM9SF4 +	chr2L	13762376	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_10_13760001	chr2L_13760001	RAL-509
228	chr2L	13853087	13853116	chr2L	13862235	13862266	roo	17	9150	5.5	4.0	4.8	2.9	9179	chr2L	13853087	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_17_13855001	chr2L_13855001	RAL-509
243	chr2L	14803877	14803913	chr2L	14809080	14809098	copia	8	5200	3.0	5.0	4.0	1.6	5221	chr2L	14803877	intergenic	not near genes	chr2L	14806488	intergenic	not near genes	chr2L	14809098	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	RAL-509
245	chr2L	14889951	14889984	chr2L	14890376	14890401	jockey	6	424	5.5	1.0	3.2	1.4	450	chr2L	14889951	intergenic	not near genes	chr2L	14890176	intergenic	not near genes	chr2L	14890401	intergenic	not near genes	chr2L_6_14890001	chr2L_14890001	RAL-509
246	chr2L	14984384	14984404	chr2L	14991981	14992006	opus	6	7601	3.5	2.0	2.8	1.6	7622	chr2L	14984384	intron	mol -	chr2L	14988195	intron	mol -	chr2L	14992006	intron	mol -	chr2L_6_14985001	chr2L_14985001	RAL-509
255	chr2L	15446052	15446071	chr2L	15453520	15453540	blood	6	7469	5.5	2.0	3.8	1.2	7488	chr2L	15446052	intergenic	not near genes	chr2L	15449796	intergenic	not near genes	chr2L	15453540	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	RAL-509
260	chr2L	15586410	15586441	chr2L	15593462	15593492	297	12	7052	2.5	2.5	2.5	3.4	7082	chr2L	15586410	intergenic	not near genes	chr2L	15589951	intergenic	not near genes	chr2L	15593492	intergenic	not near genes	chr2L_12_15585001	chr2L_15585001	RAL-509
263	chr2L	15956030	15956060	chr2L	15957497	15957527	hobo	11	1466	7.5	3.0	5.2	1.8	1497	chr2L	15956030	intron	beat-Ib -	chr2L	15956778	intron	beat-Ib -	chr2L	15957527	intron	beat-Ib -	chr2L_11_15955001	chr2L_15955001	RAL-509
266	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	11.5	16.0	13.8	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-509
269	chr2L	16141177	16141191	chr2L	16146384	16146398	copia	6	5207	0.0	4.5	2.2	1.9	5221	chr2L	16141177	intergenic	not near genes	chr2L	16143788	intergenic	not near genes	chr2L	16146398	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-509
285	chr2L	17167565	17167595	chr2L	17167806	17167836	pogo	8	240	2.0	2.0	2.0	2.7	271	chr2L	17167565	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167836	intron,intron	CG34106 +,beat-IIIa +	chr2L_8_17165001	chr2L_17165001	RAL-509
286	chr2L	17199163	17199186	chr2L	17200630	17200650	hobo	4	1466	4.0	3.0	3.5	0.9	1487	chr2L	17199163	intron	beat-IIIc -	chr2L	17199906	intron	beat-IIIc -	chr2L	17200650	intron	beat-IIIc -	chr2L_4_17195001	chr2L_17195001	RAL-509
289	chr2L	17273195	17273223	chr2L	17277972	17278006	F-element	11	4782	3.0	3.5	3.2	2.6	4811	chr2L	17273195	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278006	intergenic	not near genes	chr2L_11_17275001	chr2L_17275001	RAL-509
302	chr2L	17819921	17819945	chr2L	17825123	17825147	copia	7	5202	1.5	1.5	1.5	2.8	5226	chr2L	17819921	intron	CadN2 -	chr2L	17822534	intron	CadN2 -	chr2L	17825147	intron	CadN2 -	chr2L_7_17820001	chr2L_17820001	RAL-509
306	chr2L	17911964	17911981	chr2L	17914138	17914155	pogo	4	2171	7.0	2.0	4.5	0.7	2191	chr2L	17911964	intergenic	not near genes	chr2L	17913060	intergenic	not near genes	chr2L	17914155	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-509
310	chr2L	17951943	17951967	chr2L	17953410	17953434	hobo	9	1466	1.5	2.5	2.0	3.0	1491	chr2L	17951943	intergenic	CR44398 -,CR44397 -	chr2L	17952688	intergenic	not near genes	chr2L	17953434	intergenic	not near genes	chr2L_9_17950001	chr2L_17950001	RAL-509
311	chr2L	18051875	18051907	chr2L	18061022	18061053	roo	6	9147	2.5	2.5	2.5	1.7	9178	chr2L	18051875	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061053	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-509
321	chr2L	18408023	18408053	chr2L	18412807	18412837	Doc	14	4784	2.0	0.0	1.0	7.0	4814	chr2L	18408023	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412837	intergenic	not near genes	chr2L_14_18410001	chr2L_18410001	RAL-509
336	chr2L	19147383	19147402	chr2L	19154418	19154437	297	4	7035	0.0	6.0	3.0	1.0	7054	chr2L	19147383	intron	brat +	chr2L	19150910	intron	brat +	chr2L	19154437	intron	brat +	chr2L_4_19150001	chr2L_19150001	RAL-509
338	chr2L	19345015	19345047	chr2L	19357223	19357256	blood	8	12208	4.0	2.0	3.0	2.0	12241	chr2L	19345015	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357256	intron	dnt -	chr2L_8_19350001	chr2L_19350001	RAL-509
348	chr2L	19620098	19620126	chr2L	19621082	19621115	jockey	6	988	4.0	6.0	5.0	1.0	1017	chr2L	19620098	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621115	intron	Lar +	chr2L_6_19620001	chr2L_19620001	RAL-509
350	chr2L	19652573	19652604	chr2L	19674007	19674038	opus	8	21433	2.5	2.5	2.5	2.3	21465	chr2L	19652573	intron	Lar +	chr2L	19663306	intron	Lar +	chr2L	19674038	intron	Lar +	chr2L_8_19660001	chr2L_19660001	RAL-509
351	chr2L	19703535	19703565	chr2L	19712671	19712701	roo	6	9136	6.5	3.0	4.8	1.0	9166	chr2L	19703535	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712701	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-509
352	chr2L	19737357	19737388	chr2L	19740825	19740857	1360	14	3468	2.0	3.0	2.5	4.0	3500	chr2L	19737357	intergenic	Nf-YB +	chr2L	19739107	intergenic	not near genes	chr2L	19740857	intergenic	not near genes	chr2L_14_19735001	chr2L_19735001	RAL-509
358	chr2L	20005875	20005895	chr2L	20010948	20010971	flea	7	5075	2.0	3.0	2.5	2.0	5096	chr2L	20005875	intron	CG43861 -	chr2L	20008423	intron	CG43861 -	chr2L	20010971	intron	CG43861 -	chr2L_7_20005001	chr2L_20005001	RAL-509
360	chr2L	20272122	20272142	chr2L	20282833	20282853	copia	7	10711	2.5	5.0	3.8	1.5	10731	chr2L	20272122	intergenic	not near genes	chr2L	20277488	intergenic	not near genes	chr2L	20282853	intergenic	not near genes	chr2L_7_20275001	chr2L_20275001	RAL-509
363	chr2L	20303173	20303188	chr2L	20310640	20310656	blood	5	7467	1.5	2.5	2.0	1.7	7483	chr2L	20303173	intergenic	not near genes	chr2L	20306914	intergenic	not near genes	chr2L	20310656	intergenic	not near genes	chr2L_5_20305001	chr2L_20305001	RAL-509
365	chr2L	20372228	20372246	chr2L	20372469	20372487	pogo	4	241	1.5	5.0	3.2	1.0	259	chr2L	20372228	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372487	exon	Ugt37a1 -	chr2L_4_20370001	chr2L_20370001	RAL-509
370	chr2L	20568662	20568684	chr2L	20569052	20569074	X-element	7	390	3.0	2.0	2.5	2.0	412	chr2L	20568662	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569074	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RAL-509
371	chr2L	20576218	20576240	chr2L	20583687	20583709	blood	8	7468	4.0	4.5	4.2	1.5	7491	chr2L	20576218	intergenic	CR45347 +	chr2L	20579964	intergenic	not near genes	chr2L	20583709	3` UTR	CR44909 -	chr2L_8_20575001	chr2L_20575001	RAL-509
380	chr2L	20835814	20835840	chr2L	20836530	20836557	Quasimodo	9	717	2.5	1.0	1.8	3.2	743	chr2L	20835814	5` UTR	Oseg5 -	chr2L	20836186	intergenic	Oseg5 -,Spn38F -	chr2L	20836557	intergenic	Spn38F -	chr2L_9_20835001	chr2L_20835001	RAL-509
384	chr2L	20976641	20976671	chr2L	20981456	20981486	X-element	6	4814	3.5	1.5	2.5	1.7	4845	chr2L	20976641	intron	CG42238 -	chr2L	20979064	intron	CG42238 -	chr2L	20981486	intron	CG42238 -	chr2L_6_20975001	chr2L_20975001	RAL-509
387	chr2L	21020272	21020310	chr2L	21023948	21023987	NOF	8	3677	4.0	4.5	4.2	1.5	3715	chr2L	21020272	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023987	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	RAL-509
388	chr2L	21041135	21041167	chr2L	21049396	21049427	Tirant	7	8261	2.0	2.5	2.2	2.2	8292	chr2L	21041135	intron	CG42238 -	chr2L	21045281	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	RAL-509
400	chr2L	21981683	21981711	chr2L	21990848	21990876	roo	8	9165	3.5	3.5	3.5	1.8	9193	chr2L	21981683	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990876	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-509
403	chr2L	22258628	22258647	chr2L	22260752	22260766	G6	5	2123	3.0	2.5	2.8	1.3	2138	chr2L	22258628	intergenic	Tif-IA +	chr2L	22259697	intergenic	not near genes	chr2L	22260766	intergenic	not near genes	chr2L_5_22255001	chr2L_22255001	RAL-509
405	chr2L	22490460	22490528	chr2L	22497636	22497640	springer	6	7138	8.5	0.0	4.2	1.2	7180	chr2L	22490460	intergenic	not near genes	chr2L	22494050	intergenic	not near genes	chr2L	22497640	intergenic	not near genes	chr2L_6_22490001	chr2L_22490001	RAL-509
408	chr2R	469970	469983	chr2R	473210	473224	F-element	6	3240	3.0	2.0	2.5	1.7	3254	chr2R	469970	intergenic	not near genes	chr2R	471597	intergenic	not near genes	chr2R	473224	intergenic	not near genes	chr2R_6_470001	chr2R_470001	RAL-509
409	chr2R	529325	529357	chr2R	537950	537981	Max-element	5	8625	1.0	2.5	1.8	1.8	8656	chr2R	529325	intron	CG40378 +	chr2R	533653	intron	CG40378 +	chr2R	537981	intron	CG40378 +	chr2R_5_530001	chr2R_530001	RAL-509
410	chr2R	1082365	1082385	chr2R	1087134	1087161	Doc	7	4771	4.0	4.5	4.2	1.3	4796	chr2R	1082365	intron	rl +	chr2R	1084763	intron	rl +	chr2R	1087161	intron	rl +	chr2R_7_1080001	chr2R_1080001	RAL-509
413	chr2R	2498988	2499011	chr2R	2508135	2508158	roo	5	9143	5.0	2.0	3.5	1.1	9170	chr2R	2498988	intron	MFS17 -	chr2R	2503573	intron	MFS17 -	chr2R	2508158	intron	MFS17 -	chr2R_5_2500001	chr2R_2500001	RAL-509
424	chr2R	4838871	4838887	chr2R	4840394	4840410	transib2	6	1523	9.0	4.0	6.5	0.8	1539	chr2R	4838871	intergenic	not near genes	chr2R	4839640	intergenic	not near genes	chr2R	4840410	intergenic	not near genes	chr2R_6_4835001	chr2R_4835001	RAL-509
441	chr2R	5653040	5653077	chr2R	5653309	5653343	INE-1	5	267	4.0	1.5	2.8	1.3	303	chr2R	5653040	intergenic	CG11665 -	chr2R	5653192	intergenic	CG11665 -,CG1344 +	chr2R	5653343	intergenic	CG1344 +	chr2R_5_5650001	chr2R_5650001	RAL-509
444	chr2R	5869276	5869301	chr2R	5874351	5874377	flea	16	5075	3.0	4.5	3.8	3.3	5101	chr2R	5869276	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874377	intergenic	not near genes	chr2R_16_5870001	chr2R_5870001	RAL-509
449	chr2R	6096742	6096752	chr2R	6101909	6101932	BS	7	5184	4.0	4.0	4.0	1.4	5190	chr2R	6096742	intron	EcR -	chr2R	6099337	intron	EcR -	chr2R	6101932	intron	EcR -	chr2R_7_6095001	chr2R_6095001	RAL-509
455	chr2R	6494531	6494552	chr2R	6499293	6499304	F-element	5	4759	0.5	2.5	1.5	2.0	4773	chr2R	6494531	intergenic	not near genes	chr2R	6496918	intergenic	not near genes	chr2R	6499304	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	RAL-509
459	chr2R	6579776	6579802	chr2R	6584861	6584888	flea	7	5086	3.5	2.5	3.0	1.8	5112	chr2R	6579776	intron	jing +	chr2R	6582332	intron	jing +	chr2R	6584888	intron	jing +	chr2R_7_6580001	chr2R_6580001	RAL-509
466	chr2R	7209845	7209874	chr2R	7217590	7217622	roo	8	7746	1.5	2.0	1.8	2.9	7777	chr2R	7209845	intron	pk +	chr2R	7213734	intron	pk +	chr2R	7217622	intron	pk +	chr2R_8_7210001	chr2R_7210001	RAL-509
467	chr2R	7235823	7235836	chr2R	7240915	7240928	jockey	5	5092	5.5	1.5	3.5	1.1	5105	chr2R	7235823	intergenic	not near genes	chr2R	7238376	intergenic	not near genes	chr2R	7240928	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-509
468	chr2R	7262200	7262213	chr2R	7269261	7269274	297	5	7060	3.5	5.0	4.2	1.0	7074	chr2R	7262200	intergenic	not near genes	chr2R	7265737	intergenic	not near genes	chr2R	7269274	intergenic	not near genes	chr2R_5_7265001	chr2R_7265001	RAL-509
469	chr2R	7434897	7434918	chr2R	7439198	7439219	Juan	6	4301	4.5	5.5	5.0	1.0	4322	chr2R	7434897	intergenic	so +	chr2R	7437058	intergenic	not near genes	chr2R	7439219	intergenic	not near genes	chr2R_6_7435001	chr2R_7435001	RAL-509
471	chr2R	7608406	7608440	chr2R	7613609	7613635	I-element	6	5198	5.0	5.0	5.0	1.0	5229	chr2R	7608406	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613635	intron	CG1358 -	chr2R_6_7610001	chr2R_7610001	RAL-509
473	chr2R	7815680	7815689	chr2R	7822149	7822158	Burdock	5	6469	6.5	4.5	5.5	0.8	6478	chr2R	7815680	intergenic	CG1882 +	chr2R	7818919	intergenic	not near genes	chr2R	7822158	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-509
475	chr2R	7869188	7869199	chr2R	7873973	7873985	Doc	9	4786	7.0	3.5	5.2	1.5	4797	chr2R	7869188	intron	Dgk -	chr2R	7871586	intron	Dgk -	chr2R	7873985	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	RAL-509
486	chr2R	8330860	8330888	chr2R	8331346	8331374	roo	8	486	3.5	4.0	3.8	1.7	514	chr2R	8330860	intron	pdm3 +	chr2R	8331117	intron	pdm3 +	chr2R	8331374	intron	pdm3 +	chr2R_8_8330001	chr2R_8330001	RAL-509
488	chr2R	8398224	8398240	chr2R	8402990	8403021	Doc	4	4774	3.0	2.5	2.8	1.1	4797	chr2R	8398224	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403021	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-509
492	chr2R	8722766	8722793	chr2R	8723006	8723034	pogo	12	241	3.5	2.5	3.0	3.0	268	chr2R	8722766	intron	CG14767 -	chr2R	8722900	intron	CG14767 -	chr2R	8723034	intron	CG14767 -	chr2R_12_8720001	chr2R_8720001	RAL-509
493	chr2R	8777926	8777933	chr2R	8784130	8784137	diver	4	6204	0.5	2.5	1.5	1.6	6211	chr2R	8777926	intergenic	not near genes	chr2R	8781032	intergenic	not near genes	chr2R	8784137	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-509
498	chr2R	9151310	9151334	chr2R	9157780	9157804	Burdock	7	6470	2.0	3.5	2.8	1.8	6494	chr2R	9151310	3` UTR	CG30345 +	chr2R	9154557	intergenic	not near genes	chr2R	9157804	intergenic	CG8008 -	chr2R_7_9150001	chr2R_9150001	RAL-509
502	chr2R	9212691	9212721	chr2R	9213177	9213206	roo	9	485	3.0	5.5	4.2	1.7	515	chr2R	9212691	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213206	5` UTR	CR45309 +	chr2R_9_9210001	chr2R_9210001	RAL-509
509	chr2R	9726617	9726645	chr2R	9734166	9734196	17.6	4	7550	1.0	1.0	1.0	2.0	7579	chr2R	9726617	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734196	intron	sqa -	chr2R_4_9730001	chr2R_9730001	RAL-509
511	chr2R	10005854	10005880	chr2R	10007018	10007043	1360	7	1163	5.0	4.0	4.5	1.3	1189	chr2R	10005854	intron	Pka-R2 -	chr2R	10006448	intron	Pka-R2 -	chr2R	10007043	intron	Pka-R2 -	chr2R_7_10005001	chr2R_10005001	RAL-509
515	chr2R	10176894	10176912	chr2R	10186061	10186079	roo	6	9166	1.5	2.0	1.8	2.1	9185	chr2R	10176894	intron	KCNQ -	chr2R	10181486	intron	KCNQ -	chr2R	10186079	intron	KCNQ -	chr2R_6_10180001	chr2R_10180001	RAL-509
529	chr2R	10622356	10622374	chr2R	10637121	10637139	mdg1	4	14765	4.0	1.5	2.8	1.1	14783	chr2R	10622356	intron	CG11883 +	chr2R	10629748	intron	CG11883 +	chr2R	10637139	intron	CG11883 +	chr2R_4_10625001	chr2R_10625001	RAL-509
535	chr2R	11009813	11009844	chr2R	11018987	11019014	roo	6	9169	1.5	1.5	1.5	2.4	9201	chr2R	11009813	intron	luna -	chr2R	11014414	intron	luna -	chr2R	11019014	intron	luna -	chr2R_6_11010001	chr2R_11010001	RAL-509
536	chr2R	11019876	11019904	chr2R	11024942	11024970	jockey	8	5064	1.0	4.0	2.5	2.3	5094	chr2R	11019876	intron	luna -	chr2R	11022423	intron	luna -	chr2R	11024970	intron	luna -	chr2R_8_11020001	chr2R_11020001	RAL-509
540	chr2R	11207813	11207843	chr2R	11208005	11208033	BS	10	192	4.5	3.0	3.8	2.1	220	chr2R	11207813	intron	shn +	chr2R	11207923	intron	shn +	chr2R	11208033	intron	shn +	chr2R_10_11205001	chr2R_11205001	RAL-509
545	chr2R	11415524	11415549	chr2R	11418673	11418695	opus	5	3148	2.5	3.0	2.8	1.3	3171	chr2R	11415524	intron	Drip -	chr2R	11417110	intron	Drip -	chr2R	11418695	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-509
547	chr2R	11472650	11472678	chr2R	11473847	11473875	pogo	10	1196	4.0	5.0	4.5	1.8	1225	chr2R	11472650	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_10_11470001	chr2R_11470001	RAL-509
561	chr2R	12481152	12481169	chr2R	12482956	12482967	roo	4	1801	0.5	5.5	3.0	1.0	1815	chr2R	12481152	exon	Dh44-R2 +	chr2R	12482060	intron	Dh44-R2 +	chr2R	12482967	intron	Dh44-R2 +	chr2R_4_12480001	chr2R_12480001	RAL-509
563	chr2R	12501691	12501724	chr2R	12503850	12503886	Rt1c	6	2156	2.0	3.5	2.8	1.6	2195	chr2R	12501691	intron	fdl -	chr2R	12502788	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-509
573	chr2R	13136841	13136856	chr2R	13141639	13141654	Doc	8	4797	3.5	4.5	4.0	1.6	4813	chr2R	13136841	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141654	intron	Cap-G +	chr2R_8_13135001	chr2R_13135001	RAL-509
583	chr2R	13580503	13580531	chr2R	13580853	13580876	jockey	9	348	1.0	2.5	1.8	3.2	373	chr2R	13580503	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580876	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_9_13580001	chr2R_13580001	RAL-509
586	chr2R	13728134	13728161	chr2R	13735791	13735817	opus	4	7656	1.0	0.5	0.8	2.2	7683	chr2R	13728134	intron	fas +	chr2R	13731976	intron	fas +	chr2R	13735817	intron	fas +	chr2R_4_13730001	chr2R_13730001	RAL-509
594	chr2R	14467306	14467327	chr2R	14476464	14476485	roo	8	9158	1.0	2.0	1.5	3.2	9179	chr2R	14467306	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476485	5` UTR	CR44462 +	chr2R_8_14470001	chr2R_14470001	RAL-509
604	chr2R	14889207	14889238	chr2R	14897815	14897845	Max-element	5	8608	2.0	0.0	1.0	2.5	8638	chr2R	14889207	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-509
606	chr2R	15004726	15004749	chr2R	15005055	15005078	jockey	9	329	3.0	2.0	2.5	2.6	352	chr2R	15004726	intergenic	not near genes	chr2R	15004902	intergenic	not near genes	chr2R	15005078	intergenic	not near genes	chr2R_9_15000001	chr2R_15000001	RAL-509
608	chr2R	15084979	15085001	chr2R	15092028	15092050	297	10	7048	3.0	4.0	3.5	2.2	7071	chr2R	15084979	intergenic	not near genes	chr2R	15088514	intergenic	not near genes	chr2R	15092050	5` UTR	CR44457 +	chr2R_10_15085001	chr2R_15085001	RAL-509
610	chr2R	15119331	15119351	chr2R	15127801	15127812	Tirant	7	8476	2.0	6.0	4.0	1.4	8481	chr2R	15119331	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127812	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-509
622	chr2R	16539646	16539671	chr2R	16544855	16544878	copia	6	5209	1.0	3.5	2.2	1.9	5232	chr2R	16539646	intergenic	not near genes	chr2R	16542262	intergenic	not near genes	chr2R	16544878	intergenic	not near genes	chr2R_6_16540001	chr2R_16540001	RAL-509
637	chr2R	17147243	17147263	chr2R	17152274	17152294	jockey	11	5031	3.0	3.0	3.0	2.8	5051	chr2R	17147243	intergenic	not near genes	chr2R	17149768	intergenic	not near genes	chr2R	17152294	intergenic	not near genes	chr2R_11_17145001	chr2R_17145001	RAL-509
639	chr2R	17176353	17176389	chr2R	17182543	17182579	diver	14	6189	1.5	0.5	1.0	7.0	6226	chr2R	17176353	intergenic	not near genes	chr2R	17179466	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_14_17175001	chr2R_17175001	RAL-509
640	chr2R	17236507	17236541	chr2R	17241711	17241744	copia	11	5202	1.5	3.0	2.2	3.4	5237	chr2R	17236507	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241744	intron	mbl +	chr2R_11_17235001	chr2R_17235001	RAL-509
648	chr2R	17784029	17784057	chr2R	17784270	17784298	pogo	9	241	4.5	3.5	4.0	1.8	269	chr2R	17784029	intergenic	mir-31a -	chr2R	17784164	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_9_17780001	chr2R_17780001	RAL-509
653	chr2R	18111686	18111710	chr2R	18115554	18115578	F-element	4	3868	0.0	2.0	1.0	2.0	3892	chr2R	18111686	intergenic	not near genes	chr2R	18113632	intergenic	not near genes	chr2R	18115578	intergenic	not near genes	chr2R_4_18110001	chr2R_18110001	RAL-509
658	chr2R	18358395	18358414	chr2R	18372606	18372626	roo	7	14212	4.5	6.5	5.5	1.1	14231	chr2R	18358395	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372626	intergenic	not near genes	chr2R_7_18365001	chr2R_18365001	RAL-509
662	chr2R	18575805	18575830	chr2R	18581989	18582012	3S18	9	6185	2.5	6.5	4.5	1.6	6207	chr2R	18575805	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582012	intron	GEFmeso -	chr2R_9_18575001	chr2R_18575001	RAL-509
663	chr2R	18590875	18590900	chr2R	18600027	18600052	roo	5	9151	2.0	3.5	2.8	1.3	9177	chr2R	18590875	intron	GEFmeso -	chr2R	18595464	intron	GEFmeso -	chr2R	18600052	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-509
677	chr2R	19776594	19776630	chr2R	19779916	19779953	jockey	12	3322	4.5	4.0	4.2	2.3	3359	chr2R	19776594	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779953	intergenic	not near genes	chr2R_12_19775001	chr2R_19775001	RAL-509
679	chr2R	19914843	19914867	chr2R	19922255	19922279	mdg1	10	7411	6.5	0.5	3.5	2.2	7436	chr2R	19914843	intergenic	not near genes	chr2R	19918561	intergenic	not near genes	chr2R	19922279	intergenic	not near genes	chr2R_10_19915001	chr2R_19915001	RAL-509
680	chr2R	19957432	19957456	chr2R	19962633	19962658	copia	11	5202	4.0	3.5	3.8	2.3	5226	chr2R	19957432	intergenic	CG44623 +	chr2R	19960045	intergenic	not near genes	chr2R	19962658	intergenic	not near genes	chr2R_11_19960001	chr2R_19960001	RAL-509
694	chr2R	20739445	20739471	chr2R	20744212	20744239	F-element	4	4767	2.5	1.5	2.0	1.3	4794	chr2R	20739445	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744239	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-509
698	chr2R	21151116	21151146	chr2R	21153749	21153779	opus	7	2633	4.5	2.0	3.2	1.7	2663	chr2R	21151116	intron	CG30389 -	chr2R	21152448	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_7_21150001	chr2R_21150001	RAL-509
710	chr2R	21753083	21753116	chr2R	21753568	21753601	roo	13	484	3.5	2.0	2.8	3.4	518	chr2R	21753083	intergenic	not near genes	chr2R	21753342	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_13_21750001	chr2R_21750001	RAL-509
711	chr2R	21809523	21809558	chr2R	21817763	21817798	roo	12	8240	3.5	5.0	4.2	2.3	8275	chr2R	21809523	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817798	intergenic	not near genes	chr2R_12_21810001	chr2R_21810001	RAL-509
725	chr2R	22349697	22349721	chr2R	22351481	22351505	jockey	9	1783	2.5	3.5	3.0	2.2	1808	chr2R	22349697	intron	Liprin-gamma -	chr2R	22350601	intron	Liprin-gamma -	chr2R	22351505	intron	Liprin-gamma -	chr2R_9_22350001	chr2R_22350001	RAL-509
734	chr2R	22774960	22774997	chr2R	22775379	22775416	jockey	14	418	3.0	4.0	3.5	3.1	456	chr2R	22774960	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775416	intron	CG42260 -	chr2R_14_22775001	chr2R_22775001	RAL-509
737	chr2R	22843025	22843052	chr2R	22844987	22845014	flea	5	1962	6.0	4.0	5.0	0.8	1989	chr2R	22843025	intergenic	CG9826 +	chr2R	22844020	intergenic	not near genes	chr2R	22845014	intergenic	not near genes	chr2R_5_22840001	chr2R_22840001	RAL-509
757	chr2R	23914319	23914327	chr2R	23921943	23921944	412	5	7623	1.5	5.0	3.2	1.2	7625	chr2R	23914319	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921944	intron	kcc +	chr2R_5_23915001	chr2R_23915001	RAL-509
758	chr2R	23914330	23914332	chr2R	23921923	23921955	412	4	7611	1.5	3.0	2.2	1.2	7625	chr2R	23914330	exon	kcc +	chr2R	23918142	intron	kcc +	chr2R	23921955	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-509
759	chr2R	24147079	24147090	chr2R	24154656	24154661	412	5	7576	2.5	5.5	4.0	1.0	7582	chr2R	24147079	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154661	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-509
761	chr2R	24353428	24353459	chr2R	24361788	24361821	roo	12	8361	1.0	5.0	3.0	3.0	8393	chr2R	24353428	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361821	intron,intron	bs +,CR44811 -	chr2R_12_24355001	chr2R_24355001	RAL-509
764	chr2R	24647595	24647618	chr2R	24655151	24655175	412	7	7555	1.0	5.5	3.2	1.7	7580	chr2R	24647595	intergenic	not near genes	chr2R	24651385	intergenic	not near genes	chr2R	24655175	intergenic	not near genes	chr2R_7_24650001	chr2R_24650001	RAL-509
767	chr2R	24727887	24727918	chr2R	24735395	24735412	mdg1	13	7503	1.5	1.5	1.5	5.2	7525	chr2R	24727887	intron	Mid1 -	chr2R	24731650	intron	Mid1 -	chr2R	24735412	intron	Mid1 -	chr2R_13_24730001	chr2R_24730001	RAL-509
768	chr2R	24763613	24763638	chr2R	24765588	24765614	G2	7	1972	1.0	3.0	2.0	2.3	2001	chr2R	24763613	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765614	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	RAL-509
774	chr2R	25141660	25141681	chr2R	25159350	25159371	roo	5	17689	1.5	2.5	2.0	1.7	17711	chr2R	25141660	intergenic	not near genes	chr2R	25150516	intergenic	not near genes	chr2R	25159371	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-509
780	chr3L	110210	110244	chr3L	119377	119411	roo	12	9167	6.5	4.5	5.5	1.8	9201	chr3L	110210	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119411	intergenic	not near genes	chr3L_12_110001	chr3L_110001	RAL-509
782	chr3L	402692	402718	chr3L	409745	409771	297	5	7049	5.0	6.0	5.5	0.8	7079	chr3L	402692	intergenic	not near genes	chr3L	406232	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_5_405001	chr3L_405001	RAL-509
789	chr3L	789912	789942	chr3L	790397	790427	roo	6	485	2.0	2.0	2.0	2.0	515	chr3L	789912	intergenic	not near genes	chr3L	790170	intergenic	not near genes	chr3L	790427	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-509
791	chr3L	925175	925206	chr3L	932601	932632	mdg1	14	7426	5.0	4.0	4.5	2.5	7457	chr3L	925175	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932632	intron	Glut1 +	chr3L_14_925001	chr3L_925001	RAL-509
792	chr3L	939768	939802	chr3L	940889	940922	jockey	15	1120	5.0	3.5	4.2	2.9	1154	chr3L	939768	intron	Glut1 +	chr3L	940345	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_15_940001	chr3L_940001	RAL-509
799	chr3L	1154132	1154154	chr3L	1163282	1163304	roo	8	9150	2.0	1.0	1.5	3.2	9172	chr3L	1154132	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163304	intron	bab2 -	chr3L_8_1155001	chr3L_1155001	RAL-509
802	chr3L	1219600	1219625	chr3L	1227332	1227355	412	7	7729	2.5	6.0	4.2	1.3	7755	chr3L	1219600	intron	mwh +	chr3L	1223478	intron	mwh +	chr3L	1227355	intron	mwh +	chr3L_7_1220001	chr3L_1220001	RAL-509
809	chr3L	1506003	1506025	chr3L	1513600	1513622	17.6	7	7595	4.0	2.0	3.0	1.8	7619	chr3L	1506003	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513622	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-509
816	chr3L	2447504	2447531	chr3L	2456660	2456687	roo	5	9156	2.5	2.5	2.5	1.4	9183	chr3L	2447504	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456687	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-509
822	chr3L	2751449	2751469	chr3L	2755744	2755764	F-element	4	4295	3.0	4.5	3.8	0.8	4315	chr3L	2751449	intron	Mrtf -	chr3L	2753606	intron	Mrtf -	chr3L	2755764	intron	Mrtf -	chr3L_4_2750001	chr3L_2750001	RAL-509
824	chr3L	2927840	2927859	chr3L	2936117	2936136	Tirant	9	8276	5.5	2.0	3.8	1.9	8296	chr3L	2927840	intron	Shab +	chr3L	2931988	intron	Shab +	chr3L	2936136	intron	Shab +	chr3L_9_2930001	chr3L_2930001	RAL-509
828	chr3L	3281443	3281473	chr3L	3281939	3281964	Doc	7	494	2.5	5.5	4.0	1.4	521	chr3L	3281443	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281964	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-509
830	chr3L	3475086	3475111	chr3L	3475528	3475555	jockey	8	444	1.5	4.0	2.8	2.1	469	chr3L	3475086	intron	CG42324 +	chr3L	3475320	intron	CG42324 +	chr3L	3475555	intron	CG42324 +	chr3L_8_3475001	chr3L_3475001	RAL-509
833	chr3L	3601296	3601332	chr3L	3606607	3606643	copia	10	5310	2.5	2.0	2.2	3.1	5347	chr3L	3601296	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606643	intron	Eip63E +	chr3L_10_3600001	chr3L_3600001	RAL-509
855	chr3L	4901135	4901154	chr3L	4907324	4907344	diver	10	6189	2.0	1.5	1.8	3.6	6209	chr3L	4901135	intergenic	CG13704 +	chr3L	4904240	intergenic	not near genes	chr3L	4907344	intergenic	not near genes	chr3L_10_4900001	chr3L_4900001	RAL-509
872	chr3L	5910033	5910063	chr3L	5910274	5910304	pogo	5	241	1.0	3.0	2.0	1.7	271	chr3L	5910033	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910304	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-509
873	chr3L	5926319	5926344	chr3L	5926506	5926534	BS	15	185	4.0	2.5	3.2	3.6	215	chr3L	5926319	intron	Vap-33B +	chr3L	5926426	intron	Vap-33B +	chr3L	5926534	intron	Vap-33B +	chr3L_15_5925001	chr3L_5925001	RAL-509
874	chr3L	6001684	6001716	chr3L	6004384	6004414	jockey	10	2700	5.0	2.5	3.8	2.1	2730	chr3L	6001684	intron	PVRAP +	chr3L	6003049	intron	PVRAP +	chr3L	6004414	intron	PVRAP +	chr3L_10_6000001	chr3L_6000001	RAL-509
875	chr3L	6040365	6040381	chr3L	6042721	6042736	Doc	4	2356	3.0	1.0	2.0	1.3	2371	chr3L	6040365	intergenic	Jon65Aiv +	chr3L	6041550	intergenic	not near genes	chr3L	6042736	intergenic	not near genes	chr3L_4_6040001	chr3L_6040001	RAL-509
878	chr3L	6220916	6220944	chr3L	6230067	6230094	roo	16	9151	5.5	7.0	6.2	2.2	9178	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225505	intergenic	not near genes	chr3L	6230094	intergenic	not near genes	chr3L_16_6225001	chr3L_6225001	RAL-509
881	chr3L	6405658	6405680	chr3L	6432122	6432144	roo	6	26464	2.0	1.5	1.8	2.1	26486	chr3L	6405658	intron	CG42747 +	chr3L	6418901	intron	CG42747 +	chr3L	6432144	intron	CG42747 +	chr3L_6_6415001	chr3L_6415001	RAL-509
886	chr3L	6855932	6855947	chr3L	6860716	6860731	Doc	6	4782	3.0	3.0	3.0	1.5	4799	chr3L	6855932	intergenic	not near genes	chr3L	6858332	intergenic	not near genes	chr3L	6860731	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	RAL-509
887	chr3L	6887524	6887540	chr3L	6895016	6895032	roo	5	7492	2.5	5.5	4.0	1.0	7508	chr3L	6887524	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895032	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-509
897	chr3L	7793710	7793742	chr3L	7800762	7800794	297	7	7052	4.0	2.5	3.2	1.7	7084	chr3L	7793710	intron	CG32369 -	chr3L	7797252	intron	CG32369 -	chr3L	7800794	intron	CG32369 -	chr3L_7_7795001	chr3L_7795001	RAL-509
901	chr3L	7886521	7886544	chr3L	7889035	7889062	Stalker4	7	2517	2.5	1.5	2.0	2.3	2541	chr3L	7886521	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889062	intron	CG32365 +	chr3L_7_7885001	chr3L_7885001	RAL-509
902	chr3L	7985363	7985395	chr3L	7987690	7987723	NOF	14	2328	6.5	3.5	5.0	2.3	2360	chr3L	7985363	intron	nmo +	chr3L	7986543	intron	nmo +	chr3L	7987723	intron	nmo +	chr3L_14_7985001	chr3L_7985001	RAL-509
907	chr3L	8498305	8498329	chr3L	8505772	8505796	blood	6	7467	5.5	4.0	4.8	1.0	7491	chr3L	8498305	intron	CG43163 -	chr3L	8502050	intron	CG43163 -	chr3L	8505796	intron	CG43163 -	chr3L_6_8500001	chr3L_8500001	RAL-509
911	chr3L	8791273	8791300	chr3L	8796693	8796720	I-element	7	5420	5.5	4.5	5.0	1.2	5447	chr3L	8791273	exon	Fhos +	chr3L	8793996	intron	Fhos +	chr3L	8796720	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	RAL-509
920	chr3L	9076926	9076955	chr3L	9084486	9084515	412	16	7560	6.5	5.0	5.8	2.4	7589	chr3L	9076926	exon	Tequila +	chr3L	9080720	intron	Tequila +	chr3L	9084515	exon	Tequila +	chr3L_16_9080001	chr3L_9080001	RAL-509
922	chr3L	9164711	9164722	chr3L	9166178	9166189	hobo	5	1467	5.0	1.0	3.0	1.2	1478	chr3L	9164711	intron	Rdl -	chr3L	9165450	intron	Rdl -	chr3L	9166189	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-509
923	chr3L	9219243	9219275	chr3L	9219914	9219947	jockey	11	670	6.0	3.0	4.5	2.0	704	chr3L	9219243	intergenic	not near genes	chr3L	9219595	intergenic	not near genes	chr3L	9219947	intergenic	not near genes	chr3L_11_9215001	chr3L_9215001	RAL-509
929	chr3L	9533762	9533785	chr3L	9541315	9541332	412	7	7549	3.0	4.0	3.5	1.6	7570	chr3L	9533762	intergenic	not near genes	chr3L	9537547	intergenic	not near genes	chr3L	9541332	intergenic	not near genes	chr3L_7_9535001	chr3L_9535001	RAL-509
930	chr3L	9571903	9571936	chr3L	9572251	9572284	jockey	9	348	4.5	1.0	2.8	2.4	381	chr3L	9571903	intron	CG42673 +	chr3L	9572094	intron	CG42673 +	chr3L	9572284	intron	CG42673 +	chr3L_9_9570001	chr3L_9570001	RAL-509
931	chr3L	9575906	9575937	chr3L	9580984	9581015	jockey	11	5078	3.5	4.0	3.8	2.3	5109	chr3L	9575906	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581015	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	RAL-509
939	chr3L	9929668	9929700	chr3L	9938447	9938479	roo	6	8778	2.5	6.5	4.5	1.1	8811	chr3L	9929668	intron	CG34356 +	chr3L	9934074	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_6_9930001	chr3L_9930001	RAL-509
953	chr3L	10414944	10414977	chr3L	10417315	10417349	Doc	13	2365	0.5	1.5	1.0	6.5	2405	chr3L	10414944	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417349	intergenic	not near genes	chr3L_13_10415001	chr3L_10415001	RAL-509
963	chr3L	11087060	11087089	chr3L	11088848	11088878	S-element	11	1789	0.0	4.0	2.0	3.7	1818	chr3L	11087060	intron	JIL-1 -	chr3L	11087969	intron	JIL-1 -	chr3L	11088878	intron	JIL-1 -	chr3L_11_11085001	chr3L_11085001	RAL-509
965	chr3L	11105291	11105328	chr3L	11107002	11107039	X-element	8	1710	1.5	0.5	1.0	4.0	1748	chr3L	11105291	intergenic	not near genes	chr3L	11106165	intergenic	not near genes	chr3L	11107039	exon	CG32073 -	chr3L_8_11105001	chr3L_11105001	RAL-509
967	chr3L	11264465	11264496	chr3L	11271416	11271441	17.6	10	6951	3.0	1.0	2.0	3.3	6976	chr3L	11264465	intergenic	not near genes	chr3L	11267953	intergenic	not near genes	chr3L	11271441	intergenic	not near genes	chr3L_10_11265001	chr3L_11265001	RAL-509
968	chr3L	11277460	11277484	chr3L	11278455	11278477	Rt1a	4	994	3.0	3.0	3.0	1.0	1017	chr3L	11277460	intergenic	not near genes	chr3L	11277968	intergenic	not near genes	chr3L	11278477	intergenic	not near genes	chr3L_4_11275001	chr3L_11275001	RAL-509
974	chr3L	11564791	11564811	chr3L	11572407	11572436	412	5	7623	2.0	1.5	1.8	1.8	7645	chr3L	11564791	exon	CG33267 +	chr3L	11568614	intron	CG33267 +	chr3L	11572436	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	RAL-509
977	chr3L	11723084	11723115	chr3L	11727879	11727910	Doc	6	4794	2.0	2.0	2.0	2.0	4826	chr3L	11723084	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_6_11725001	chr3L_11725001	RAL-509
981	chr3L	11864562	11864579	chr3L	11865854	11865874	pogo	6	1294	4.0	3.0	3.5	1.3	1312	chr3L	11864562	intron	CG44837 -	chr3L	11865218	intron	CG44837 -	chr3L	11865874	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-509
995	chr3L	12874923	12874961	chr3L	12877215	12877253	jockey	8	2292	2.0	1.5	1.8	2.9	2330	chr3L	12874923	intergenic	not near genes	chr3L	12876088	intergenic	not near genes	chr3L	12877253	intergenic	not near genes	chr3L_8_12875001	chr3L_12875001	RAL-509
996	chr3L	12919275	12919286	chr3L	12924748	12924759	Rt1c	4	5473	7.5	3.0	5.2	0.6	5484	chr3L	12919275	intergenic	not near genes	chr3L	12922017	intergenic	not near genes	chr3L	12924759	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-509
997	chr3L	12919293	12919310	chr3L	12924747	12924775	Rt1c	8	5464	2.5	3.0	2.8	2.1	5482	chr3L	12919293	intergenic	not near genes	chr3L	12922034	intergenic	not near genes	chr3L	12924775	intergenic	not near genes	chr3L_8_12920001	chr3L_12920001	RAL-509
999	chr3L	12957797	12957820	chr3L	12962279	12962302	copia	9	4482	5.0	5.0	5.0	1.5	4505	chr3L	12957797	intergenic	not near genes	chr3L	12960050	intergenic	not near genes	chr3L	12962302	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	RAL-509
1012	chr3L	13525155	13525189	chr3L	13532951	13532985	roo	11	7796	4.5	4.0	4.2	2.1	7830	chr3L	13525155	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532985	intergenic	not near genes	chr3L_11_13525001	chr3L_13525001	RAL-509
1014	chr3L	13804549	13804579	chr3L	13822835	13822854	roo	6	18284	3.0	4.0	3.5	1.3	18305	chr3L	13804549	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822854	intergenic	not near genes	chr3L_6_13810001	chr3L_13810001	RAL-509
1022	chr3L	14245568	14245587	chr3L	14245662	14245681	1360	7	94	1.0	2.0	1.5	2.8	113	chr3L	14245568	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245681	3` UTR	CR44561 -	chr3L_7_14245001	chr3L_14245001	RAL-509
1028	chr3L	14468449	14468471	chr3L	14473654	14473677	copia	6	5206	2.0	3.0	2.5	1.7	5228	chr3L	14468449	intron	bbg -	chr3L	14471063	intron	bbg -	chr3L	14473677	intron	bbg -	chr3L_6_14470001	chr3L_14470001	RAL-509
1030	chr3L	14721182	14721210	chr3L	14723024	14723052	Rt1c	6	1839	4.0	2.5	3.2	1.4	1870	chr3L	14721182	intron	ome +	chr3L	14722117	intron	ome +	chr3L	14723052	intron	ome +	chr3L_6_14720001	chr3L_14720001	RAL-509
1031	chr3L	14725598	14725620	chr3L	14728596	14728618	Doc	5	2998	2.0	3.5	2.8	1.3	3020	chr3L	14725598	intron	ome +	chr3L	14727108	intron	ome +	chr3L	14728618	intron	ome +	chr3L_5_14725001	chr3L_14725001	RAL-509
1039	chr3L	15085047	15085083	chr3L	15086213	15086249	1360	5	1166	2.5	0.5	1.5	2.0	1202	chr3L	15085047	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086249	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-509
1054	chr3L	15929198	15929220	chr3L	15938345	15938367	roo	6	9147	2.5	0.5	1.5	2.4	9169	chr3L	15929198	intron	Pka-C3 -	chr3L	15933782	intron	Pka-C3 -	chr3L	15938367	intron	Pka-C3 -	chr3L_6_15930001	chr3L_15930001	RAL-509
1058	chr3L	16184106	16184140	chr3L	16188925	16188946	X-element	7	4816	2.0	3.0	2.5	2.0	4840	chr3L	16184106	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188946	intergenic	not near genes	chr3L_7_16185001	chr3L_16185001	RAL-509
1062	chr3L	16443859	16443873	chr3L	16446199	16446213	Doc	4	2340	3.5	6.5	5.0	0.7	2354	chr3L	16443859	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445036	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446213	intron,intron	CG33158 +,dsx-c73A -	chr3L_4_16445001	chr3L_16445001	RAL-509
1063	chr3L	16493974	16494013	chr3L	16494490	16494518	jockey	14	516	8.5	2.0	5.2	2.3	544	chr3L	16493974	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494246	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494518	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_14_16490001	chr3L_16490001	RAL-509
1066	chr3L	16616513	16616541	chr3L	16621837	16621869	297	6	5326	1.5	1.5	1.5	2.4	5356	chr3L	16616513	3` UTR	Abl -	chr3L	16619191	3` UTR	Abl -	chr3L	16621869	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-509
1068	chr3L	16684021	16684052	chr3L	16689242	16689273	copia	5	5221	2.5	2.0	2.2	1.6	5252	chr3L	16684021	intron,intron	Lasp -,CG43954 -	chr3L	16686647	intron,intron	Lasp -,CG43954 -	chr3L	16689273	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_5_16685001	chr3L_16685001	RAL-509
1074	chr3L	16945727	16945755	chr3L	16954880	16954885	roo	9	9147	8.0	3.5	5.8	1.3	9158	chr3L	16945727	exon	Obp73a +	chr3L	16950306	intergenic	not near genes	chr3L	16954885	5` UTR	Nc73EF +	chr3L_9_16950001	chr3L_16950001	RAL-509
1075	chr3L	17085005	17085022	chr3L	17094152	17094171	roo	4	9148	3.5	1.5	2.5	1.1	9166	chr3L	17085005	intron	Rbp6 -	chr3L	17089588	intron	Rbp6 -	chr3L	17094171	intron	Rbp6 -	chr3L_4_17085001	chr3L_17085001	RAL-509
1086	chr3L	17516986	17517010	chr3L	17524544	17524564	412	12	7557	3.0	4.0	3.5	2.7	7578	chr3L	17516986	intron	CG7564 +	chr3L	17520775	intron	CG7564 +	chr3L	17524564	3` UTR	CG7564 +	chr3L_12_17520001	chr3L_17520001	RAL-509
1092	chr3L	18047705	18047741	chr3L	18056762	18056797	roo	6	9057	0.0	1.0	0.5	4.0	9092	chr3L	18047705	intron	Eip75B -	chr3L	18052251	intron	Eip75B -	chr3L	18056797	intron	Eip75B -	chr3L_6_18050001	chr3L_18050001	RAL-509
1102	chr3L	18506134	18506159	chr3L	18509597	18509622	F-element	8	3463	1.0	1.0	1.0	4.0	3488	chr3L	18506134	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509622	intergenic	not near genes	chr3L_8_18505001	chr3L_18505001	RAL-509
1103	chr3L	18528628	18528650	chr3L	18537789	18537811	roo	4	9161	2.0	3.0	2.5	1.1	9183	chr3L	18528628	intergenic	not near genes	chr3L	18533220	intergenic	not near genes	chr3L	18537811	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	RAL-509
1107	chr3L	18593953	18593980	chr3L	18595933	18595960	Doc	5	1980	0.5	0.0	0.2	4.2	2007	chr3L	18593953	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18595960	intergenic	CR45389 +	chr3L_5_18590001	chr3L_18590001	RAL-509
1114	chr3L	18772409	18772438	chr3L	18781090	18781119	roo	6	8681	1.5	3.5	2.5	1.7	8710	chr3L	18772409	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781119	intron	ftz-f1 -	chr3L_6_18775001	chr3L_18775001	RAL-509
1120	chr3L	19008859	19008869	chr3L	19009173	19009206	jockey	4	332	2.5	3.5	3.0	1.0	347	chr3L	19008859	intron	nkd -	chr3L	19009032	intron	nkd -	chr3L	19009206	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-509
1123	chr3L	19115656	19115674	chr3L	19115820	19115852	BS	6	175	6.5	3.0	4.8	1.0	196	chr3L	19115656	intron	CG14082 -	chr3L	19115754	intron	CG14082 -	chr3L	19115852	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-509
1124	chr3L	19117045	19117073	chr3L	19124489	19124520	mdg1	6	7445	5.0	3.5	4.2	1.2	7475	chr3L	19117045	intron	CG14082 -	chr3L	19120782	intron	CG14082 -	chr3L	19124520	intron	CG14082 -	chr3L_6_19120001	chr3L_19120001	RAL-509
1128	chr3L	19208058	19208090	chr3L	19209432	19209464	Doc	8	1373	3.0	1.0	2.0	2.7	1406	chr3L	19208058	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209464	intron	fz2 -	chr3L_8_19205001	chr3L_19205001	RAL-509
1137	chr3L	19848507	19848534	chr3L	19857697	19857724	roo	9	9190	3.5	4.0	3.8	1.9	9217	chr3L	19848507	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857724	intron	Papss +	chr3L_9_19850001	chr3L_19850001	RAL-509
1138	chr3L	19861824	19861848	chr3L	19863612	19863635	S-element	6	1788	2.0	3.5	2.8	1.6	1811	chr3L	19861824	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863635	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	RAL-509
1146	chr3L	20321095	20321104	chr3L	20342901	20342910	17.6	5	21806	10.5	15.5	13.0	0.4	21815	chr3L	20321095	exon	Spn77Bb +	chr3L	20332002	intergenic	not near genes	chr3L	20342910	exon	Spn77Bc +	chr3L_5_20330001	chr3L_20330001	RAL-509
1149	chr3L	20476753	20476780	chr3L	20484352	20484379	springer	6	7599	3.5	2.0	2.8	1.6	7626	chr3L	20476753	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484379	3` UTR	ZnT77C -	chr3L_6_20480001	chr3L_20480001	RAL-509
1151	chr3L	20590070	20590095	chr3L	20590604	20590607	412	6	526	2.5	5.0	3.8	1.2	537	chr3L	20590070	intergenic	not near genes	chr3L	20590338	intergenic	not near genes	chr3L	20590607	intergenic	not near genes	chr3L_6_20590001	chr3L_20590001	RAL-509
1156	chr3L	21014920	21014947	chr3L	21023400	21023422	Tirant	8	8476	2.0	3.0	2.5	2.3	8502	chr3L	21014920	intron	skd -	chr3L	21019171	intron	skd -	chr3L	21023422	intron	skd -	chr3L_8_21015001	chr3L_21015001	RAL-509
1158	chr3L	21151867	21151895	chr3L	21156951	21156979	flea	5	5084	2.0	2.0	2.0	1.7	5112	chr3L	21151867	intron	Ac78C -	chr3L	21154423	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	RAL-509
1162	chr3L	21306152	21306180	chr3L	21315311	21315339	roo	5	9159	3.0	1.0	2.0	1.7	9187	chr3L	21306152	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310746	intron	Pc -	chr3L	21315339	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-509
1165	chr3L	21498834	21498864	chr3L	21500470	21500500	1360	5	1636	6.0	6.0	6.0	0.7	1666	chr3L	21498834	intron	Glg1 -	chr3L	21499667	intron	Glg1 -	chr3L	21500500	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-509
1167	chr3L	21749317	21749340	chr3L	21754477	21754500	Doc	8	5160	4.5	2.0	3.2	1.9	5183	chr3L	21749317	intron	Syn1 -	chr3L	21751908	intron	Syn1 -	chr3L	21754500	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-509
1176	chr3L	22099682	22099703	chr3L	22105868	22105889	3S18	5	6186	3.5	1.0	2.2	1.6	6207	chr3L	22099682	intergenic	not near genes	chr3L	22102786	intergenic	not near genes	chr3L	22105889	intergenic	not near genes	chr3L_5_22100001	chr3L_22100001	RAL-509
1183	chr3L	22555769	22555801	chr3L	22563239	22563271	blood	10	7462	3.0	1.0	2.0	3.3	7502	chr3L	22555769	intergenic	not near genes	chr3L	22559520	intergenic	not near genes	chr3L	22563271	intergenic	not near genes	chr3L_10_22555001	chr3L_22555001	RAL-509
1185	chr3L	22577620	22577644	chr3L	22582405	22582432	Doc	10	4787	2.5	4.5	3.5	2.2	4812	chr3L	22577620	intergenic	not near genes	chr3L	22580026	intergenic	not near genes	chr3L	22582432	3` UTR	CG14459 -	chr3L_10_22580001	chr3L_22580001	RAL-509
1187	chr3L	22617189	22617215	chr3L	22624640	22624667	blood	12	7450	5.0	3.0	4.0	2.4	7478	chr3L	22617189	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624667	intron	CG14459 -	chr3L_12_22620001	chr3L_22620001	RAL-509
1191	chr3L	22761389	22761415	chr3L	22766823	22766849	Ivk	5	5434	3.0	1.5	2.2	1.6	5460	chr3L	22761389	intron	SPoCk +	chr3L	22764119	intron	SPoCk +	chr3L	22766849	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-509
1194	chr3L	22865985	22866013	chr3L	22867118	22867146	Doc	8	1133	2.0	1.5	1.8	2.9	1161	chr3L	22865985	intron	CG33170 +	chr3L	22866566	intron	CG33170 +	chr3L	22867146	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	RAL-509
1198	chr3L	22989868	22989886	chr3L	22996836	22996860	297	6	6973	2.5	1.5	2.0	2.0	6992	chr3L	22989868	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996860	intergenic	not near genes	chr3L_6_22990001	chr3L_22990001	RAL-509
1201	chr3L	24012419	24012433	chr3L	24020760	24020774	roo	4	8341	2.5	1.0	1.8	1.4	8355	chr3L	24012419	intergenic	not near genes	chr3L	24016596	intergenic	not near genes	chr3L	24020774	intergenic	not near genes	chr3L_4_24015001	chr3L_24015001	RAL-509
1202	chr3L	24021287	24021311	chr3L	24022434	24022467	1360	9	1156	2.0	1.5	1.8	3.2	1180	chr3L	24021287	intergenic	not near genes	chr3L	24021877	intergenic	not near genes	chr3L	24022467	intergenic	not near genes	chr3L_9_24020001	chr3L_24020001	RAL-509
1218	chr3L	27727650	27727657	chr3L	27728738	27728738	G-element	4	1096	2.0	3.5	2.8	1.1	1088	chr3L	27727650	intergenic	not near genes	chr3L	27728194	intergenic	not near genes	chr3L	27728738	intergenic	not near genes	chr3L_4_27725001	chr3L_27725001	RAL-509
1224	chr3R	4206083	4206104	chr3R	4211657	4211671	mdg3	4	5572	1.0	1.5	1.2	1.8	5588	chr3R	4206083	intron	CG14636 -	chr3R	4208877	intron	CG14636 -	chr3R	4211671	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-509
1225	chr3R	4408410	4408437	chr3R	4412714	4412741	Juan	7	4304	3.5	3.5	3.5	1.6	4331	chr3R	4408410	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412741	intron	CG32944 -	chr3R_7_4410001	chr3R_4410001	RAL-509
1231	chr3R	4887484	4887505	chr3R	4894861	4894868	rover	4	7373	1.5	5.0	3.2	1.0	7384	chr3R	4887484	intergenic	not near genes	chr3R	4891176	intergenic	not near genes	chr3R	4894868	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-509
1234	chr3R	5045848	5045874	chr3R	5052950	5052976	HMS-Beagle	5	7102	1.0	5.0	3.0	1.2	7128	chr3R	5045848	intron	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5052976	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	RAL-509
1235	chr3R	5067983	5068009	chr3R	5073500	5073526	mdg3	6	5517	3.0	2.5	2.8	1.6	5543	chr3R	5067983	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073526	intergenic	not near genes	chr3R_6_5070001	chr3R_5070001	RAL-509
1239	chr3R	5338398	5338427	chr3R	5343575	5343604	Rt1c	7	5176	1.0	3.0	2.0	2.3	5206	chr3R	5338398	intron	mtd -	chr3R	5341001	intron	mtd -	chr3R	5343604	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-509
1240	chr3R	5445966	5445991	chr3R	5452422	5452451	Burdock	7	6459	2.0	2.5	2.2	2.2	6485	chr3R	5445966	intron	CG14669 +	chr3R	5449208	intron	CG14669 +	chr3R	5452451	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-509
1243	chr3R	5746016	5746044	chr3R	5746257	5746283	pogo	7	240	3.0	5.5	4.2	1.3	267	chr3R	5746016	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746283	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-509
1244	chr3R	5747023	5747046	chr3R	5753213	5753236	diver	4	6190	1.5	2.0	1.8	1.4	6213	chr3R	5747023	intergenic	Madm +	chr3R	5750130	intergenic	not near genes	chr3R	5753236	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-509
1245	chr3R	5809116	5809133	chr3R	5809363	5809383	pogo	7	248	4.5	2.0	3.2	1.7	267	chr3R	5809116	3` UTR	CG11000 +	chr3R	5809250	3` UTR	CG11000 +	chr3R	5809383	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	RAL-509
1246	chr3R	5822380	5822410	chr3R	5823547	5823577	1360	13	1167	4.5	4.0	4.2	2.5	1197	chr3R	5822380	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823577	3` UTR	CG2023 -	chr3R_13_5820001	chr3R_5820001	RAL-509
1247	chr3R	5927562	5927586	chr3R	5927799	5927824	pogo	7	236	2.0	4.0	3.0	1.8	262	chr3R	5927562	intron	CG34113 -	chr3R	5927693	intron	CG34113 -	chr3R	5927824	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-509
1249	chr3R	6015960	6015991	chr3R	6024441	6024472	Tirant	9	8480	1.5	1.5	1.5	3.6	8512	chr3R	6015960	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024472	intergenic	not near genes	chr3R_9_6020001	chr3R_6020001	RAL-509
1251	chr3R	6158509	6158532	chr3R	6167092	6167115	Tirant	7	8583	5.5	5.0	5.2	1.1	8606	chr3R	6158509	intergenic	not near genes	chr3R	6162812	intergenic	not near genes	chr3R	6167115	intergenic	CG1077 +	chr3R_7_6160001	chr3R_6160001	RAL-509
1252	chr3R	6206281	6206313	chr3R	6206497	6206507	BS	9	214	2.0	2.0	2.0	3.0	226	chr3R	6206281	exon	Osi24 +	chr3R	6206394	intron	Osi24 +	chr3R	6206507	intron	Osi24 +	chr3R_9_6205001	chr3R_6205001	RAL-509
1255	chr3R	6737516	6737527	chr3R	6739302	6739314	Doc	6	1786	1.5	5.5	3.5	1.3	1798	chr3R	6737516	intron	pb -	chr3R	6738415	intron	pb -	chr3R	6739314	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-509
1270	chr3R	7694585	7694609	chr3R	7713646	7713670	invader3	4	19061	0.5	3.0	1.8	1.4	19085	chr3R	7694585	3` UTR	Nlg1 +	chr3R	7704128	intergenic	not near genes	chr3R	7713670	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-509
1271	chr3R	7729476	7729499	chr3R	7737404	7737437	Stalker2	8	7937	0.5	2.5	1.5	3.2	7961	chr3R	7729476	intergenic	not near genes	chr3R	7733456	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-509
1273	chr3R	8094406	8094434	chr3R	8099711	8099739	Transpac	7	5305	3.5	4.5	4.0	1.4	5333	chr3R	8094406	intron	CG7900 +	chr3R	8097072	intron	CG7900 +	chr3R	8099739	intron	CG7900 +	chr3R_7_8095001	chr3R_8095001	RAL-509
1274	chr3R	8101762	8101784	chr3R	8104846	8104867	G2	4	3084	3.5	2.0	2.8	1.1	3105	chr3R	8101762	exon	CG7900 +	chr3R	8103314	intron	CG7900 +	chr3R	8104867	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-509
1278	chr3R	8403011	8403041	chr3R	8412177	8412206	roo	10	9165	3.5	6.0	4.8	1.7	9195	chr3R	8403011	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412206	intron	CG45263 -	chr3R_10_8405001	chr3R_8405001	RAL-509
1280	chr3R	8570476	8570509	chr3R	8575112	8575144	HMS-Beagle	11	4634	1.5	4.5	3.0	2.8	4668	chr3R	8570476	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575144	intergenic	not near genes	chr3R_11_8570001	chr3R_8570001	RAL-509
1281	chr3R	8601774	8601799	chr3R	8610927	8610951	roo	13	9153	3.0	4.0	3.5	2.9	9177	chr3R	8601774	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610951	intron	5-HT2B +	chr3R_13_8605001	chr3R_8605001	RAL-509
1283	chr3R	8707358	8707381	chr3R	8709799	8709822	jockey	8	2441	2.5	6.0	4.2	1.5	2464	chr3R	8707358	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709822	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-509
1292	chr3R	9278782	9278807	chr3R	9284040	9284067	Rt1a	13	5259	0.0	4.0	2.0	4.3	5285	chr3R	9278782	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284067	intergenic	not near genes	chr3R_13_9280001	chr3R_9280001	RAL-509
1307	chr3R	10804185	10804197	chr3R	10811717	10811729	17.6	4	7532	1.5	2.5	2.0	1.3	7544	chr3R	10804185	intergenic	CG14692 -	chr3R	10807957	intergenic	not near genes	chr3R	10811729	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-509
1317	chr3R	11379252	11379263	chr3R	11388404	11388418	roo	7	9154	3.0	2.0	2.5	2.0	9166	chr3R	11379252	intron	pros +	chr3R	11383835	intron	pros +	chr3R	11388418	intron	pros +	chr3R_7_11380001	chr3R_11380001	RAL-509
1328	chr3R	11841059	11841096	chr3R	11846250	11846285	BS	5	5190	5.0	2.0	3.5	1.1	5226	chr3R	11841059	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846285	intron	CG6959 -	chr3R_5_11840001	chr3R_11840001	RAL-509
1332	chr3R	12022887	12022912	chr3R	12025064	12025089	pogo	9	2176	4.0	5.0	4.5	1.6	2202	chr3R	12022887	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025089	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	RAL-509
1346	chr3R	12864543	12864557	chr3R	12865045	12865059	roo	4	502	1.5	0.5	1.0	2.0	516	chr3R	12864543	intergenic	not near genes	chr3R	12864801	intergenic	not near genes	chr3R	12865059	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-509
1348	chr3R	12920155	12920186	chr3R	12925357	12925389	copia	11	5199	2.5	5.0	3.8	2.3	5234	chr3R	12920155	intron	beat-Vb +	chr3R	12922772	intron	beat-Vb +	chr3R	12925389	intron	beat-Vb +	chr3R_11_12920001	chr3R_12920001	RAL-509
1352	chr3R	13143040	13143065	chr3R	13148616	13148641	mdg3	6	5576	3.5	5.5	4.5	1.1	5601	chr3R	13143040	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145840	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13145001	chr3R_13145001	RAL-509
1371	chr3R	14180824	14180828	chr3R	14185589	14185592	F-element	4	4765	4.0	0.0	2.0	1.3	4768	chr3R	14180824	intron	Dop1R1 -	chr3R	14183208	intron	Dop1R1 -	chr3R	14185592	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	RAL-509
1372	chr3R	14246393	14246416	chr3R	14247886	14247891	jockey	7	1489	5.0	3.5	4.2	1.3	1498	chr3R	14246393	intergenic	not near genes	chr3R	14247142	intergenic	not near genes	chr3R	14247891	intergenic	not near genes	chr3R_7_14245001	chr3R_14245001	RAL-509
1382	chr3R	15102502	15102511	chr3R	15109759	15109768	412	5	7257	0.5	3.0	1.8	1.8	7266	chr3R	15102502	intron	CG42788 -	chr3R	15106135	intron	CG42788 -	chr3R	15109768	intron	CG42788 -	chr3R_5_15105001	chr3R_15105001	RAL-509
1384	chr3R	15132063	15132081	chr3R	15135123	15135141	Juan	13	3060	6.0	5.5	5.8	1.9	3078	chr3R	15132063	intergenic	CG42788 -	chr3R	15133602	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_13_15130001	chr3R_15130001	RAL-509
1386	chr3R	15162549	15162562	chr3R	15167317	15167330	F-element	5	4768	3.0	0.0	1.5	2.0	4781	chr3R	15162549	intron	Gyc88E +	chr3R	15164940	intron	Gyc88E +	chr3R	15167330	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	RAL-509
1390	chr3R	15601168	15601195	chr3R	15608690	15608717	412	16	7521	6.0	2.5	4.2	3.1	7549	chr3R	15601168	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608717	intergenic	not near genes	chr3R_16_15600001	chr3R_15600001	RAL-509
1391	chr3R	15618744	15618758	chr3R	15626216	15626232	blood	9	7474	2.0	5.5	3.8	1.9	7488	chr3R	15618744	intergenic	not near genes	chr3R	15622488	intergenic	not near genes	chr3R	15626232	intergenic	not near genes	chr3R_9_15620001	chr3R_15620001	RAL-509
1397	chr3R	16756320	16756347	chr3R	16762511	16762533	diver	9	6190	1.0	1.5	1.2	4.1	6213	chr3R	16756320	intron	bxd -	chr3R	16759426	intron	bxd -	chr3R	16762533	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-509
1402	chr3R	17294671	17294702	chr3R	17295099	17295130	BS	8	428	1.5	4.5	3.0	2.0	459	chr3R	17294671	intergenic	not near genes	chr3R	17294900	intergenic	not near genes	chr3R	17295130	intergenic	not near genes	chr3R_8_17290001	chr3R_17290001	RAL-509
1403	chr3R	17346690	17346720	chr3R	17348253	17348283	F-element	6	1563	2.0	4.0	3.0	1.5	1593	chr3R	17346690	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348283	intron	beat-IIa -	chr3R_6_17345001	chr3R_17345001	RAL-509
1409	chr3R	17591288	17591321	chr3R	17591724	17591743	F-element	9	431	4.0	5.0	4.5	1.6	455	chr3R	17591288	intergenic	not near genes	chr3R	17591516	intergenic	not near genes	chr3R	17591743	intergenic	not near genes	chr3R_9_17590001	chr3R_17590001	RAL-509
1411	chr3R	17638317	17638338	chr3R	17638803	17638824	roo	5	486	0.5	3.5	2.0	1.7	507	chr3R	17638317	intron	CG43175 +	chr3R	17638570	intron	CG43175 +	chr3R	17638824	intron,intron	CG43175 +,CR45222 +	chr3R_5_17635001	chr3R_17635001	RAL-509
1415	chr3R	17925862	17925888	chr3R	17927328	17927355	hobo	9	1466	3.0	7.0	5.0	1.5	1493	chr3R	17925862	intron	cpo +	chr3R	17926608	intron	cpo +	chr3R	17927355	intron	cpo +	chr3R_9_17925001	chr3R_17925001	RAL-509
1447	chr3R	20109537	20109571	chr3R	20114743	20114777	copia	5	5206	0.5	3.0	1.8	1.8	5240	chr3R	20109537	intergenic	not near genes	chr3R	20112157	intergenic	not near genes	chr3R	20114777	intergenic	CG10887 +	chr3R_5_20110001	chr3R_20110001	RAL-509
1450	chr3R	20156704	20156724	chr3R	20165858	20165894	roo	9	9167	3.0	5.0	4.0	1.8	9190	chr3R	20156704	intergenic	not near genes	chr3R	20161299	intergenic	not near genes	chr3R	20165894	intergenic	not near genes	chr3R_9_20160001	chr3R_20160001	RAL-509
1453	chr3R	20330999	20331019	chr3R	20331485	20331505	roo	4	486	0.5	2.0	1.2	1.8	506	chr3R	20330999	intergenic	Sirt2 +	chr3R	20331252	intergenic	Sirt2 +	chr3R	20331505	intergenic	not near genes	chr3R_4_20330001	chr3R_20330001	RAL-509
1455	chr3R	20513002	20513030	chr3R	20515705	20515733	opus	5	2703	1.5	1.0	1.2	2.3	2731	chr3R	20513002	intergenic	not near genes	chr3R	20514368	intergenic	not near genes	chr3R	20515733	intergenic	not near genes	chr3R_5_20510001	chr3R_20510001	RAL-509
1466	chr3R	20854472	20854511	chr3R	20859267	20859294	Doc	6	4779	3.5	1.5	2.5	1.7	4822	chr3R	20854472	intron	Ir93a -	chr3R	20856883	intron	Ir93a -	chr3R	20859294	exon	Ir93a -	chr3R_6_20855001	chr3R_20855001	RAL-509
1472	chr3R	21141698	21141706	chr3R	21150159	21150166	Tirant	6	8467	1.0	3.0	2.0	2.0	8468	chr3R	21141698	intron	SNF4Agamma +	chr3R	21145932	intron	SNF4Agamma +	chr3R	21150166	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-509
1480	chr3R	21761119	21761153	chr3R	21768511	21768534	mdg1	9	7387	4.5	3.0	3.8	1.9	7415	chr3R	21761119	exon	CG42335 +	chr3R	21764826	intron	CG42335 +	chr3R	21768534	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RAL-509
1485	chr3R	22234684	22234712	chr3R	22236003	22236027	pogo	5	1318	1.0	1.0	1.0	2.5	1343	chr3R	22234684	intron	SKIP +	chr3R	22235356	intron	SKIP +	chr3R	22236027	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-509
1486	chr3R	22239493	22239524	chr3R	22248551	22248584	roo	10	9059	1.0	2.5	1.8	3.6	9091	chr3R	22239493	intron	SKIP +	chr3R	22244038	intron	SKIP +	chr3R	22248584	intron	SKIP +	chr3R_10_22240001	chr3R_22240001	RAL-509
1488	chr3R	22450548	22450574	chr3R	22453182	22453214	NOF	10	2638	1.5	6.0	3.8	2.1	2666	chr3R	22450548	intron	CG34376 +	chr3R	22451881	intron	CG34376 +	chr3R	22453214	intron	CG34376 +	chr3R_10_22450001	chr3R_22450001	RAL-509
1506	chr3R	23558400	23558423	chr3R	23560181	23560204	Bari1	9	1781	2.0	2.5	2.2	2.8	1804	chr3R	23558400	intron	beat-IV +	chr3R	23559302	intron	beat-IV +	chr3R	23560204	intron	beat-IV +	chr3R_9_23555001	chr3R_23555001	RAL-509
1508	chr3R	23684699	23684721	chr3R	23685184	23685189	roo	6	482	1.5	5.0	3.2	1.4	490	chr3R	23684699	exon	CG18754 +	chr3R	23684944	intron	CG18754 +	chr3R	23685189	exon	CG18754 +	chr3R_6_23680001	chr3R_23680001	RAL-509
1515	chr3R	24072090	24072103	chr3R	24072527	24072541	jockey	7	437	6.5	4.5	5.5	1.1	451	chr3R	24072090	intron	4EHP -	chr3R	24072316	intron	4EHP -	chr3R	24072541	intron	4EHP -	chr3R_7_24070001	chr3R_24070001	RAL-509
1516	chr3R	24076912	24076949	chr3R	24078379	24078390	hobo	7	1463	5.0	3.5	4.2	1.3	1478	chr3R	24076912	intron	4EHP -	chr3R	24077651	intron	4EHP -	chr3R	24078390	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-509
1517	chr3R	24207219	24207234	chr3R	24212295	24212310	flea	8	5076	13.0	6.0	9.5	0.8	5091	chr3R	24207219	intron	twin -	chr3R	24209764	intron	twin -	chr3R	24212310	intron	twin -	chr3R_8_24205001	chr3R_24205001	RAL-509
1524	chr3R	24493274	24493302	chr3R	24493503	24493531	BS	6	228	2.0	5.0	3.5	1.3	257	chr3R	24493274	intergenic	not near genes	chr3R	24493402	intergenic	not near genes	chr3R	24493531	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-509
1526	chr3R	24730091	24730119	chr3R	24732469	24732497	Doc	5	2373	2.0	0.5	1.2	2.3	2406	chr3R	24730091	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732497	intron	tok +	chr3R_5_24730001	chr3R_24730001	RAL-509
1527	chr3R	24927134	24927152	chr3R	24931922	24931943	Doc	7	4791	1.5	1.5	1.5	2.8	4809	chr3R	24927134	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931943	intergenic	CG11771 +	chr3R_7_24925001	chr3R_24925001	RAL-509
1543	chr3R	25832695	25832712	chr3R	25841876	25841894	roo	9	9182	4.0	5.5	4.8	1.6	9199	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837294	intron	alpha4GT2 +	chr3R	25841894	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-509
1544	chr3R	25832716	25832721	chr3R	25841875	25841903	roo	4	9176	3.5	5.0	4.2	0.8	9187	chr3R	25832716	exon	alpha4GT2 +	chr3R	25837310	intron	alpha4GT2 +	chr3R	25841903	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-509
1556	chr3R	26376324	26376354	chr3R	26385484	26385514	roo	11	9159	3.5	0.5	2.0	3.7	9190	chr3R	26376324	intergenic	not near genes	chr3R	26380919	intergenic	not near genes	chr3R	26385514	intergenic	not near genes	chr3R_11_26380001	chr3R_26380001	RAL-509
1560	chr3R	26510505	26510531	chr3R	26519566	26519592	roo	9	9061	2.0	3.5	2.8	2.4	9087	chr3R	26510505	intron	plum -	chr3R	26515048	intron	plum -	chr3R	26519592	intron,5` UTR	plum -,CR45226 +	chr3R_9_26515001	chr3R_26515001	RAL-509
1562	chr3R	26558326	26558360	chr3R	26565637	26565671	Stalker4	11	7312	1.0	2.5	1.8	3.9	7345	chr3R	26558326	intron	scrib +	chr3R	26561998	intron	scrib +	chr3R	26565671	intron	scrib +	chr3R_11_26560001	chr3R_26560001	RAL-509
1566	chr3R	26810553	26810583	chr3R	26811038	26811068	roo	10	485	3.5	3.0	3.2	2.4	515	chr3R	26810553	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811068	intron	Tl +	chr3R_10_26810001	chr3R_26810001	RAL-509
1569	chr3R	27007410	27007426	chr3R	27016545	27016561	roo	4	9135	1.0	1.5	1.2	1.8	9151	chr3R	27007410	intron	RYa-R +	chr3R	27011986	intron	RYa-R +	chr3R	27016561	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	RAL-509
1572	chr3R	27140521	27140548	chr3R	27148126	27148158	412	22	7609	9.5	7.5	8.5	2.3	7637	chr3R	27140521	intron	CG6051 -	chr3R	27144340	intron	CG6051 -	chr3R	27148158	intron	CG6051 -	chr3R_22_27140001	chr3R_27140001	RAL-509
1573	chr3R	27137233	27137257	chr3R	27149199	27149222	412	5	11965	14.5	22.5	18.5	0.3	11989	chr3R	27137233	intron	CG6051 -	chr3R	27143228	intron	CG6051 -	chr3R	27149222	intron	CG6051 -	chr3R_5_27140001	chr3R_27140001	RAL-509
1576	chr3R	27342791	27342822	chr3R	27351372	27351403	Tirant	6	8581	3.0	3.5	3.2	1.4	8612	chr3R	27342791	intron	CG42534 +	chr3R	27347097	intron	CG42534 +	chr3R	27351403	intron	CG42534 +	chr3R_6_27345001	chr3R_27345001	RAL-509
1583	chr3R	27725572	27725597	chr3R	27731014	27731039	I-element	7	5441	0.0	2.0	1.0	3.5	5467	chr3R	27725572	intergenic	not near genes	chr3R	27728306	intergenic	not near genes	chr3R	27731039	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-509
1588	chr3R	27856758	27856787	chr3R	27858241	27858270	hopper2	14	1481	5.5	1.5	3.5	3.1	1512	chr3R	27856758	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858270	intron	CG34353 -	chr3R_14_27855001	chr3R_27855001	RAL-509
1590	chr3R	27862958	27862987	chr3R	27868263	27868292	Transpac	7	5305	2.5	3.0	2.8	1.8	5334	chr3R	27862958	intron	CG34353 -	chr3R	27865625	intron	CG34353 -	chr3R	27868292	intron	CG34353 -	chr3R_7_27865001	chr3R_27865001	RAL-509
1591	chr3R	27875700	27875728	chr3R	27882755	27882783	297	12	7054	3.5	3.5	3.5	2.7	7083	chr3R	27875700	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882783	intron	CG34353 -	chr3R_12_27875001	chr3R_27875001	RAL-509
1593	chr3R	28068492	28068524	chr3R	28073933	28073965	I-element	16	5441	3.0	4.0	3.5	3.6	5473	chr3R	28068492	intron	CG34362 +	chr3R	28071228	intron	CG34362 +	chr3R	28073965	intron	CG34362 +	chr3R_16_28070001	chr3R_28070001	RAL-509
1595	chr3R	28173671	28173704	chr3R	28181101	28181134	mdg1	8	7430	1.5	6.0	3.8	1.7	7463	chr3R	28173671	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181134	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	RAL-509
1597	chr3R	28253338	28253368	chr3R	28255848	28255878	jockey	19	2510	4.0	3.5	3.8	4.0	2540	chr3R	28253338	intergenic	not near genes	chr3R	28254608	intergenic	not near genes	chr3R	28255878	intergenic	not near genes	chr3R_19_28250001	chr3R_28250001	RAL-509
1610	chr3R	28758283	28758298	chr3R	28763900	28763915	roo	4	5617	4.5	0.0	2.2	1.2	5632	chr3R	28758283	intergenic	aqrs -	chr3R	28761099	intergenic	not near genes	chr3R	28763915	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-509
1611	chr3R	28763900	28763915	chr3R	28771343	28771358	Stalker4	8	7443	0.0	4.5	2.2	2.5	7458	chr3R	28763900	intergenic	not near genes	chr3R	28767629	intergenic	not near genes	chr3R	28771358	intergenic	not near genes	chr3R_8_28765001	chr3R_28765001	RAL-509
1613	chr3R	28792875	28792888	chr3R	28797968	28797981	jockey	8	5094	1.5	3.0	2.2	2.5	5106	chr3R	28792875	intergenic	not near genes	chr3R	28795428	intergenic	not near genes	chr3R	28797981	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	RAL-509
1624	chr3R	29319826	29319857	chr3R	29320145	29320176	jockey	8	319	1.5	4.0	2.8	2.1	350	chr3R	29319826	intergenic	Cnx99A -	chr3R	29320001	intergenic	Cnx99A -	chr3R	29320176	intergenic	not near genes	chr3R_8_29320001	chr3R_29320001	RAL-509
1625	chr3R	29406619	29406629	chr3R	29407905	29407915	jockey	6	1286	3.5	5.5	4.5	1.1	1296	chr3R	29406619	intron	Ptp99A +	chr3R	29407267	intron	Ptp99A +	chr3R	29407915	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-509
1626	chr3R	29406633	29406647	chr3R	29407897	29407900	jockey	6	1268	2.5	4.0	3.2	1.4	1267	chr3R	29406633	intron	Ptp99A +	chr3R	29407266	intron	Ptp99A +	chr3R	29407900	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-509
1630	chr3R	29738267	29738299	chr3R	29739734	29739766	hobo	9	1465	1.5	2.5	2.0	3.0	1499	chr3R	29738267	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739766	5` UTR	CG1969 +	chr3R_9_29735001	chr3R_29735001	RAL-509
1633	chr3R	29882019	29882050	chr3R	29891176	29891207	roo	5	9157	3.0	4.0	3.5	1.1	9188	chr3R	29882019	intron	CG31038 +	chr3R	29886613	intron	CG31038 +	chr3R	29891207	intron	CG31038 +	chr3R_5_29885001	chr3R_29885001	RAL-509
1638	chr3R	30084849	30084880	chr3R	30086316	30086346	hobo	11	1467	4.5	3.0	3.8	2.3	1497	chr3R	30084849	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086346	intron	sima +	chr3R_11_30085001	chr3R_30085001	RAL-509
1646	chr3R	30238759	30238792	chr3R	30239923	30239956	1360	9	1163	2.0	1.5	1.8	3.2	1197	chr3R	30238759	intergenic	not near genes	chr3R	30239358	intergenic	not near genes	chr3R	30239956	intergenic	not near genes	chr3R_9_30235001	chr3R_30235001	RAL-509
1650	chr3R	30317330	30317352	chr3R	30324922	30324944	roo	4	7592	0.5	4.5	2.5	1.1	7614	chr3R	30317330	intron	hdc +	chr3R	30321137	intron	hdc +	chr3R	30324944	intron	hdc +	chr3R_4_30320001	chr3R_30320001	RAL-509
1651	chr3R	30375537	30375570	chr3R	30383162	30383194	412	7	7625	2.0	3.0	2.5	2.0	7657	chr3R	30375537	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383194	intergenic	not near genes	chr3R_7_30375001	chr3R_30375001	RAL-509
1652	chr3R	30396217	30396244	chr3R	30404483	30404510	roo	4	8266	3.0	1.0	2.0	1.3	8293	chr3R	30396217	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404510	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-509
1654	chr3R	30480474	30480499	chr3R	30482942	30482964	jockey	7	2467	3.0	2.0	2.5	2.0	2490	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481719	intron	PH4alphaEFB +	chr3R	30482964	intron	PH4alphaEFB +	chr3R_7_30480001	chr3R_30480001	RAL-509
1657	chr3R	30679522	30679549	chr3R	30686991	30687018	blood	8	7469	5.0	3.0	4.0	1.6	7496	chr3R	30679522	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687018	intergenic	not near genes	chr3R_8_30680001	chr3R_30680001	RAL-509
1659	chr3R	30818809	30818844	chr3R	30820374	30820409	1360	8	1564	3.5	0.5	2.0	2.7	1600	chr3R	30818809	intron	cindr +	chr3R	30819609	intron	cindr +	chr3R	30820409	intron	cindr +	chr3R_8_30815001	chr3R_30815001	RAL-509
1663	chr3R	31074229	31074259	chr3R	31081827	31081857	springer	10	7598	4.0	4.0	4.0	2.0	7628	chr3R	31074229	intron	Sox100B +	chr3R	31078043	intron	Sox100B +	chr3R	31081857	intron	Sox100B +	chr3R_10_31075001	chr3R_31075001	RAL-509
1666	chr3R	31279397	31279403	chr3R	31285572	31285594	diver	6	6188	0.5	3.5	2.0	2.0	6197	chr3R	31279397	intergenic	not near genes	chr3R	31282496	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-509
1676	chr3R	31691536	31691562	chr3R	31696298	31696298	Doc	6	4756	2.5	7.0	4.8	1.0	4762	chr3R	31691536	intergenic	not near genes	chr3R	31693917	intergenic	not near genes	chr3R	31696298	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	RAL-509
1682	chr3R	31997992	31998016	chr3R	32005462	32005486	blood	8	7469	4.5	4.0	4.2	1.5	7494	chr3R	31997992	intron	heph -	chr3R	32001739	intron	heph -	chr3R	32005486	intron	heph -	chr3R_8_32000001	chr3R_32000001	RAL-509
1683	chr4	76487	76513	chr4	81930	81950	I-element	5	5442	8.0	1.5	4.8	0.9	5463	chr4	76487	intron	pan +	chr4	79218	intron	pan +	chr4	81950	intron	pan +	chr4_5_75001	chr4_75001	RAL-509
1686	chr4	662186	662201	chr4	662831	662846	INE-1	4	645	1.5	0.0	0.8	2.2	660	chr4	662186	intron	gw -	chr4	662516	intron	gw -	chr4	662846	5` UTR	gw -	chr4_4_660001	chr4_660001	RAL-509
1687	chr4	671614	671636	chr4	680186	680219	Tirant	8	8580	2.5	2.0	2.2	2.5	8605	chr4	671614	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-509
1689	chrX	295860	295877	chrX	303479	303495	412	7	7620	5.5	2.5	4.0	1.4	7635	chrX	295860	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303495	intron	CG3777 +	chrX_7_295001	chrX_295001	RAL-509
1690	chrX	318484	318496	chrX	323570	323581	flea	4	5086	3.5	2.0	2.8	1.1	5097	chrX	318484	intron,intron	CG3777 +,CG32816 -	chrX	321032	intron,intron	CG3777 +,CG32816 -	chrX	323581	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	RAL-509
1691	chrX	551431	551448	chrX	558989	559007	412	6	7559	4.5	1.0	2.8	1.6	7576	chrX	551431	intron	Appl +	chrX	555219	intron	Appl +	chrX	559007	intron	Appl +	chrX_6_555001	chrX_555001	RAL-509
1699	chrX	827616	827625	chrX	835394	835414	roo	5	7789	4.0	0.0	2.0	1.7	7798	chrX	827616	intron	CG43867 -	chrX	831515	intron	CG43867 -	chrX	835414	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-509
1700	chrX	906703	906729	chrX	908492	908507	S-element	8	1787	4.0	8.0	6.0	1.1	1804	chrX	906703	intron	CG43867 -	chrX	907605	intron	CG43867 -	chrX	908507	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-509
1704	chrX	1357774	1357811	chrX	1367943	1367981	Doc	6	10170	1.5	1.0	1.2	2.7	10207	chrX	1357774	intergenic	png -	chrX	1362878	intergenic	not near genes	chrX	1367981	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-509
1709	chrX	1627979	1627993	chrX	1635447	1635461	gtwin	5	7467	2.0	0.5	1.2	2.3	7482	chrX	1627979	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635461	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-509
1711	chrX	1954886	1954918	chrX	1962825	1962858	Stalker2	5	7938	4.0	1.5	2.8	1.3	7972	chrX	1954886	intron	Hr4 +	chrX	1958872	intron	Hr4 +	chrX	1962858	intron	Hr4 +	chrX_5_1955001	chrX_1955001	RAL-509
1715	chrX	2399841	2399867	chrX	2408193	2408211	roo	6	8342	4.0	5.0	4.5	1.1	8370	chrX	2399841	intergenic	not near genes	chrX	2404026	intergenic	not near genes	chrX	2408211	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-509
1719	chrX	3058024	3058048	chrX	3058265	3058289	pogo	5	241	1.0	1.0	1.0	2.5	265	chrX	3058024	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058289	intron	kirre +	chrX_5_3055001	chrX_3055001	RAL-509
1720	chrX	3075635	3075659	chrX	3080941	3080964	Transpac	4	5306	3.0	2.0	2.5	1.1	5329	chrX	3075635	intron	kirre +	chrX	3078300	intron	kirre +	chrX	3080964	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-509
1724	chrX	3415025	3415050	chrX	3421207	3421235	3S18	5	6184	1.0	2.0	1.5	2.0	6210	chrX	3415025	intron,intron	CR44999 +,CG12535 -	chrX	3418130	intron,intron	CR44999 +,CG12535 -	chrX	3421235	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-509
1725	chrX	3493092	3493120	chrX	3502251	3502278	roo	7	9159	2.0	3.0	2.5	2.0	9186	chrX	3493092	intron,intron	CR44999 +,Gas8 -	chrX	3497685	intron,intron	CR44999 +,Gas8 -	chrX	3502278	intron,intron	CR44999 +,Gas8 -	chrX_7_3495001	chrX_3495001	RAL-509
1727	chrX	3597554	3597581	chrX	3619722	3619749	roo	5	22164	2.5	5.0	3.8	1.0	22195	chrX	3597554	intron	AstA-R1 +	chrX	3608652	intron	AstA-R1 +	chrX	3619749	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-509
1729	chrX	3726758	3726797	chrX	3730155	3730194	NOF	11	3397	2.0	3.5	2.8	2.9	3436	chrX	3726758	intron	tlk +	chrX	3728476	intron	tlk +	chrX	3730194	intron	tlk +	chrX_11_3725001	chrX_3725001	RAL-509
1734	chrX	3986867	3986889	chrX	3994499	3994522	412	5	7632	3.5	5.5	4.5	0.9	7655	chrX	3986867	intergenic	not near genes	chrX	3990694	intergenic	not near genes	chrX	3994522	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-509
1740	chrX	4731814	4731831	chrX	4736907	4736924	jockey	5	5093	6.5	0.5	3.5	1.1	5110	chrX	4731814	intergenic	not near genes	chrX	4734369	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-509
1741	chrX	4763256	4763285	chrX	4763743	4763773	Stalker4	9	485	2.0	4.0	3.0	2.2	517	chrX	4763256	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_9_4760001	chrX_4760001	RAL-509
1742	chrX	4792382	4792407	chrX	4792815	4792840	jockey	7	433	2.5	6.0	4.2	1.3	458	chrX	4792382	intergenic	not near genes	chrX	4792611	intergenic	not near genes	chrX	4792840	intergenic	not near genes	chrX_7_4790001	chrX_4790001	RAL-509
1743	chrX	4827976	4827995	chrX	4835347	4835366	Stalker4	5	7371	3.0	2.5	2.8	1.3	7390	chrX	4827976	intergenic	not near genes	chrX	4831671	intergenic	not near genes	chrX	4835366	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-509
1744	chrX	4990041	4990076	chrX	4997255	4997290	roo	7	7214	1.5	4.0	2.8	1.8	7249	chrX	4990041	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997290	intron	CR44833 -	chrX_7_4990001	chrX_4990001	RAL-509
1745	chrX	5096275	5096302	chrX	5103840	5103867	springer	7	7564	1.0	2.5	1.8	2.5	7592	chrX	5096275	intron,intron	CG15465 +,rg +	chrX	5100071	intron,intron	CG15465 +,rg +	chrX	5103867	intron,intron	CG15465 +,rg +	chrX_7_5100001	chrX_5100001	RAL-509
1749	chrX	5524849	5524869	chrX	5528712	5528732	412	6	3863	0.0	0.5	0.2	5.0	3883	chrX	5524849	intergenic	snoRNA:Psi28S-3342 -	chrX	5526790	intergenic	not near genes	chrX	5528732	intergenic	Vsx2 -	chrX_6_5525001	chrX_5525001	RAL-509
1753	chrX	5883816	5883831	chrX	5884050	5884072	pogo	6	239	2.0	2.5	2.2	1.9	256	chrX	5883816	intron	CR45668 -	chrX	5883944	intron	CR45668 -	chrX	5884072	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RAL-509
1754	chrX	5883832	5883836	chrX	5884049	5884077	pogo	4	235	1.0	2.5	1.8	1.4	245	chrX	5883832	intron	CR45668 -	chrX	5883954	intron	CR45668 -	chrX	5884077	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-509
1755	chrX	5884168	5884193	chrX	5884409	5884434	pogo	12	241	0.0	1.5	0.8	6.7	266	chrX	5884168	intron	CR45668 -	chrX	5884301	intron	CR45668 -	chrX	5884434	intron	CR45668 -	chrX_12_5880001	chrX_5880001	RAL-509
1757	chrX	6171589	6171616	chrX	6179022	6179049	Quasimodo	7	7433	2.0	3.0	2.5	2.0	7460	chrX	6171589	intron	Ca-alpha1T -	chrX	6175319	intron	Ca-alpha1T -	chrX	6179049	intron	Ca-alpha1T -	chrX_7_6175001	chrX_6175001	RAL-509
1762	chrX	6335213	6335241	chrX	6337722	6337751	Tirant	4	2510	0.0	5.5	2.8	1.1	2538	chrX	6335213	intergenic	not near genes	chrX	6336482	intergenic	not near genes	chrX	6337751	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-509
1763	chrX	6392870	6392890	chrX	6397635	6397655	Doc	9	4763	2.0	3.5	2.8	2.4	4785	chrX	6392870	intergenic	not near genes	chrX	6395262	intergenic	not near genes	chrX	6397655	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-509
1764	chrX	6562817	6562837	chrX	6571298	6571316	Tirant	4	8481	6.5	1.5	4.0	0.8	8499	chrX	6562817	intron	CG34417 +	chrX	6567066	intron	CG34417 +	chrX	6571316	intron	CG34417 +	chrX_4_6565001	chrX_6565001	RAL-509
1765	chrX	6605482	6605504	chrX	6608504	6608526	Burdock	4	3022	2.0	3.5	2.8	1.1	3044	chrX	6605482	intron	pigs +	chrX	6607004	intron	pigs +	chrX	6608526	intron	pigs +	chrX_4_6605001	chrX_6605001	RAL-509
1766	chrX	7023609	7023627	chrX	7030990	7031017	Tabor	11	7387	1.5	2.5	2.0	3.7	7408	chrX	7023609	intron	CG12541 -	chrX	7027313	intron	CG12541 -	chrX	7031017	intron	CG12541 -	chrX_11_7025001	chrX_7025001	RAL-509
1767	chrX	7125246	7125279	chrX	7134404	7134438	roo	12	9159	0.5	2.5	1.5	4.8	9192	chrX	7125246	intergenic	not near genes	chrX	7129842	intergenic	not near genes	chrX	7134438	intergenic	not near genes	chrX_12_7125001	chrX_7125001	RAL-509
1769	chrX	7702901	7702926	chrX	7703339	7703365	jockey	6	438	3.0	2.0	2.5	1.7	464	chrX	7702901	intron	CHES-1-like -	chrX	7703133	intron	CHES-1-like -	chrX	7703365	intron	CHES-1-like -	chrX_6_7700001	chrX_7700001	RAL-509
1772	chrX	7845727	7845740	chrX	7847218	7847231	hopper2	4	1491	2.5	3.0	2.8	1.1	1504	chrX	7845727	intergenic	not near genes	chrX	7846479	intergenic	not near genes	chrX	7847231	intergenic	not near genes	chrX_4_7845001	chrX_7845001	RAL-509
1776	chrX	8364845	8364879	chrX	8365242	8365293	BS	4	401	2.5	0.0	1.2	1.8	448	chrX	8364845	intron	nAChRalpha3 -	chrX	8365069	intron	nAChRalpha3 -	chrX	8365293	intron	nAChRalpha3 -	chrX_4_8365001	chrX_8365001	RAL-509
1780	chrX	8922328	8922361	chrX	8922762	8922794	jockey	6	432	4.5	4.0	4.2	1.2	466	chrX	8922328	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_6_8920001	chrX_8920001	RAL-509
1784	chrX	9575806	9575819	chrX	9576113	9576143	mdg3	5	321	2.5	4.0	3.2	1.2	337	chrX	9575806	intron,exon	CG32699 -,CG42395 -	chrX	9575974	intron,intron	CG32699 -,CG42395 -	chrX	9576143	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-509
1790	chrX	10138217	10138248	chrX	10145721	10145752	412	4	7504	1.0	3.5	2.2	1.2	7535	chrX	10138217	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145752	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	RAL-509
1799	chrX	10550855	10550885	chrX	10552322	10552352	hobo	15	1467	3.0	3.5	3.2	3.6	1497	chrX	10550855	intron	spri -	chrX	10551604	intron	spri -	chrX	10552352	intron	spri -	chrX_15_10550001	chrX_10550001	RAL-509
1801	chrX	10686048	10686082	chrX	10691185	10691219	roo	8	5137	2.0	3.0	2.5	2.3	5171	chrX	10686048	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691219	intron	X11Lbeta +	chrX_8_10685001	chrX_10685001	RAL-509
1806	chrX	11184253	11184283	chrX	11189329	11189359	flea	4	5076	2.5	3.0	2.8	1.1	5106	chrX	11184253	intergenic	not near genes	chrX	11186806	intergenic	not near genes	chrX	11189359	intergenic	not near genes	chrX_4_11185001	chrX_11185001	RAL-509
1810	chrX	11312073	11312093	chrX	11319426	11319440	Stalker2	4	7350	3.5	2.0	2.8	1.1	7367	chrX	11312073	intergenic	not near genes	chrX	11315756	intergenic	not near genes	chrX	11319440	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-509
1812	chrX	11633417	11633449	chrX	11640470	11640503	297	9	7054	4.0	2.0	3.0	2.2	7086	chrX	11633417	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_9_11635001	chrX_11635001	RAL-509
1822	chrX	12930601	12930610	chrX	12937717	12937726	HMS-Beagle	4	7116	1.5	4.5	3.0	1.0	7125	chrX	12930601	intron	fne +	chrX	12934164	intron	fne +	chrX	12937726	intron	fne +	chrX_4_12930001	chrX_12930001	RAL-509
1828	chrX	13429464	13429493	chrX	13430610	13430642	jockey	8	1148	1.0	3.5	2.2	2.5	1178	chrX	13429464	intergenic	not near genes	chrX	13430053	intergenic	not near genes	chrX	13430642	intergenic	not near genes	chrX_8_13430001	chrX_13430001	RAL-509
1830	chrX	13463652	13463671	chrX	13469229	13469248	mdg3	6	5577	3.5	2.0	2.8	1.6	5596	chrX	13463652	intron	Neto +	chrX	13466450	intron	Neto +	chrX	13469248	intron	Neto +	chrX_6_13465001	chrX_13465001	RAL-509
1836	chrX	14105021	14105047	chrX	14114172	14114195	roo	6	9150	2.0	5.0	3.5	1.3	9174	chrX	14105021	intergenic	not near genes	chrX	14109608	intergenic	not near genes	chrX	14114195	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-509
1839	chrX	14416309	14416339	chrX	14421077	14421106	F-element	5	4768	0.0	1.5	0.8	2.8	4797	chrX	14416309	intron	dpr8 +	chrX	14418708	intron	dpr8 +	chrX	14421106	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-509
1843	chrX	14636461	14636495	chrX	14641902	14641936	I-element	8	5439	4.5	2.0	3.2	1.9	5475	chrX	14636461	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641936	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-509
1845	chrX	14818765	14818792	chrX	14823966	14823991	copia	8	5203	3.0	3.0	3.0	2.0	5226	chrX	14818765	intron	rut -	chrX	14821378	intron	rut -	chrX	14823991	intron	rut -	chrX_8_14820001	chrX_14820001	RAL-509
1846	chrX	14936857	14936885	chrX	14946114	14946142	roo	6	9256	1.0	1.5	1.2	2.7	9285	chrX	14936857	intron	pdgy -	chrX	14941500	intron	pdgy -	chrX	14946142	intron	pdgy -	chrX_6_14940001	chrX_14940001	RAL-509
1849	chrX	15273718	15273735	chrX	15274869	15274886	1360	6	1153	2.5	3.5	3.0	1.5	1168	chrX	15273718	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274886	intergenic	not near genes	chrX_6_15270001	chrX_15270001	RAL-509
1852	chrX	15413048	15413088	chrX	15417350	15417365	Juan	13	4297	0.5	2.5	1.5	5.2	4317	chrX	15413048	intron	Cngl -	chrX	15415206	intron	Cngl -	chrX	15417365	intron	Cngl -	chrX_13_15415001	chrX_15415001	RAL-509
1853	chrX	15421925	15421944	chrX	15423432	15423449	pogo	8	1506	3.0	2.0	2.5	2.3	1524	chrX	15421925	intron	Cngl -	chrX	15422687	intron	Cngl -	chrX	15423449	intron	Cngl -	chrX_8_15420001	chrX_15420001	RAL-509
1854	chrX	15435692	15435701	chrX	15436125	15436134	rover	4	432	3.5	7.5	5.5	0.6	442	chrX	15435692	intron	Cngl -	chrX	15435913	intron	Cngl -	chrX	15436134	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-509
1857	chrX	16492648	16492677	chrX	16498224	16498254	mdg3	8	5576	2.0	2.0	2.0	2.7	5606	chrX	16492648	intron	para -	chrX	16495451	intron	para -	chrX	16498254	intron	para -	chrX_8_16495001	chrX_16495001	RAL-509
1866	chrX	17211445	17211460	chrX	17212148	17212164	INE-1	8	704	5.5	19.5	12.5	0.6	719	chrX	17211445	intergenic	not near genes	chrX	17211804	intergenic	not near genes	chrX	17212164	intergenic	CG18258 +	chrX_8_17210001	chrX_17210001	RAL-509
1877	chrX	18194072	18194102	chrX	18194607	18194637	BS	9	534	3.0	2.5	2.8	2.4	565	chrX	18194072	intron	Frq2 +	chrX	18194354	intron	Frq2 +	chrX	18194637	intron	Frq2 +	chrX_9_18190001	chrX_18190001	RAL-509
1879	chrX	18429493	18429514	chrX	18434804	18434825	Transpac	6	5311	4.0	5.0	4.5	1.1	5332	chrX	18429493	intergenic	not near genes	chrX	18432159	intergenic	not near genes	chrX	18434825	intergenic	not near genes	chrX_6_18430001	chrX_18430001	RAL-509
1880	chrX	18555393	18555407	chrX	18556914	18556928	transib2	5	1521	1.5	2.0	1.8	1.8	1535	chrX	18555393	intron	Bx +	chrX	18556160	intron	Bx +	chrX	18556928	intron	Bx +	chrX_5_18555001	chrX_18555001	RAL-509
1883	chrX	18957073	18957102	chrX	18965736	18965765	roo	5	8663	1.0	0.0	0.5	3.3	8692	chrX	18957073	intron	CG43759 +	chrX	18961419	intron	CG43759 +	chrX	18965765	intron	CG43759 +	chrX_5_18960001	chrX_18960001	RAL-509
1884	chrX	19060407	19060437	chrX	19065191	19065221	Doc	7	4784	2.5	2.5	2.5	2.0	4814	chrX	19060407	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065221	intron	CG14190 +	chrX_7_19060001	chrX_19060001	RAL-509
1887	chrX	19136562	19136584	chrX	19143478	19143503	412	5	6918	2.5	3.0	2.8	1.3	6941	chrX	19136562	intergenic	not near genes	chrX	19140032	intergenic	not near genes	chrX	19143503	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	RAL-509
1891	chrX	19380164	19380181	chrX	19380405	19380422	pogo	6	241	4.5	1.5	3.0	1.5	258	chrX	19380164	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380422	intron	kek5 +	chrX_6_19380001	chrX_19380001	RAL-509
1892	chrX	19472120	19472156	chrX	19472689	19472720	jockey	10	566	1.5	4.0	2.8	2.6	600	chrX	19472120	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472720	intergenic	not near genes	chrX_10_19470001	chrX_19470001	RAL-509
1894	chrX	19710078	19710098	chrX	19711857	19711884	S-element	8	1784	4.0	3.5	3.8	1.7	1806	chrX	19710078	intron	meso18E -	chrX	19710981	intron	meso18E -	chrX	19711884	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-509
1902	chrX	20377328	20377348	chrX	20378791	20378813	hobo	11	1465	3.0	1.0	2.0	3.7	1485	chrX	20377328	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378813	intergenic	not near genes	chrX_11_20375001	chrX_20375001	RAL-509
1904	chrX	20504124	20504154	chrX	20505645	20505665	transib2	4	1518	2.0	3.0	2.5	1.1	1541	chrX	20504124	intron	RhoGAP19D -	chrX	20504894	intron	RhoGAP19D -	chrX	20505665	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-509
1910	chrX	20940718	20940750	chrX	20942187	20942219	hobo	12	1468	3.5	1.5	2.5	3.4	1501	chrX	20940718	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942219	intergenic	not near genes	chrX_12_20940001	chrX_20940001	RAL-509
1913	chrX	21086129	21086165	chrX	21087158	21087194	jockey	8	1028	1.5	1.5	1.5	3.2	1065	chrX	21086129	intergenic	not near genes	chrX	21086662	intergenic	not near genes	chrX	21087194	intergenic	not near genes	chrX_8_21085001	chrX_21085001	RAL-509
1916	chrX	21458705	21458726	chrX	21464141	21464161	Ivk	8	5436	0.0	7.0	3.5	1.8	5456	chrX	21458705	intergenic	not near genes	chrX	21461433	intergenic	not near genes	chrX	21464161	intergenic	not near genes	chrX_8_21460001	chrX_21460001	RAL-509
1921	chrX	22564559	22564577	chrX	22575131	22575149	jockey	4	10573	10.5	4.5	7.5	0.5	10590	chrX	22564559	intergenic	not near genes	chrX	22569854	intergenic	not near genes	chrX	22575149	intergenic	not near genes	chrX_4_22565001	chrX_22565001	RAL-509
1925	chrX	22697509	22697521	chrX	22701806	22701818	Juan	10	4297	2.5	5.5	4.0	2.0	4309	chrX	22697509	intron	CR44997 +	chrX	22699664	intron	CR44997 +	chrX	22701818	intron	CR44997 +	chrX_10_22695001	chrX_22695001	RAL-509
1926	chrX	22771505	22771539	chrX	22774796	22774830	297	5	3291	5.5	3.0	4.2	1.0	3325	chrX	22771505	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774830	intron	CR44997 +	chrX_5_22770001	chrX_22770001	RAL-509
1930	chrX	22987107	22987136	chrX	22989766	22989795	Burdock	5	2659	1.0	1.5	1.2	2.3	2688	chrX	22987107	intron,intron	stnA -,stnB -	chrX	22988451	intron,intron	stnA -,stnB -	chrX	22989795	intron,intron	stnA -,stnB -	chrX_5_22985001	chrX_22985001	RAL-509
1932	chrX	22996314	22996328	chrX	23003546	23003560	roo	5	7232	3.5	1.5	2.5	1.4	7246	chrX	22996314	intron,intron	stnA -,stnB -	chrX	22999937	intron,intron	stnA -,stnB -	chrX	23003560	intron,intron	stnA -,stnB -	chrX_5_22995001	chrX_22995001	RAL-509