SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47465 47488 chr2L 52566 52593 jockey 7 5104 5.0 5.0 5.0 1.2 5128 chr2L 47465 intron Cda5 - chr2L 50029 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-509 2 chr2L 314285 314314 chr2L 314370 314400 12 86 2.5 1.0 1.8 4.3 115 chr2L 314285 intron Plc21C + chr2L 314342 intron Plc21C + chr2L 314400 intron Plc21C + chr2L_12_310001 chr2L_310001 RAL-509 3 chr2L 318292 318305 chr2L 318617 318630 6 325 3.5 3.5 3.5 1.3 338 chr2L 318292 intron Plc21C + chr2L 318461 intron,exon Plc21C +,CG11912 - chr2L 318630 intron,exon Plc21C +,CG11912 - chr2L_6_315001 chr2L_315001 RAL-509 4 chr2L 347886 347915 chr2L 355386 355415 blood 7 7500 1.5 2.5 2.0 2.3 7529 chr2L 347886 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-509 5 chr2L 590332 590622 chr2L 590424 590723 6 95 9.5 2.0 5.8 0.9 391 chr2L 590332 intron Gsc - chr2L 590528 intron Gsc - chr2L 590723 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-509 6 chr2L 590632 590649 chr2L 590732 590750 5 98 4.0 5.0 4.5 0.9 118 chr2L 590632 intron Gsc - chr2L 590691 intron Gsc - chr2L 590750 intron Gsc - chr2L_5_590001 chr2L_590001 RAL-509 7 chr2L 633875 633890 chr2L 633983 633998 10 108 0.0 3.5 1.8 3.6 123 chr2L 633875 intergenic not near genes chr2L 633936 intergenic not near genes chr2L 633998 intergenic not near genes chr2L_10_630001 chr2L_630001 RAL-509 8 chr2L 686918 686949 chr2L 695957 695989 roo 14 9037 3.0 2.5 2.8 3.7 9071 chr2L 686918 intron ds - chr2L 691454 intron ds - chr2L 695989 intron ds - chr2L_14_690001 chr2L_690001 RAL-509 9 chr2L 749600 749636 chr2L 749684 749721 10 85 0.0 1.5 0.8 5.6 121 chr2L 749600 intergenic GABA-B-R3 + chr2L 749660 intergenic GABA-B-R3 + chr2L 749721 intergenic GABA-B-R3 + chr2L_10_745001 chr2L_745001 RAL-509 10 chr2L 763600 763629 chr2L 763672 763702 8 75 2.5 1.0 1.8 2.9 102 chr2L 763600 intergenic not near genes chr2L 763651 intergenic not near genes chr2L 763702 intergenic not near genes chr2L_8_760001 chr2L_760001 RAL-509 11 chr2L 764559 764575 chr2L 764653 764673 9 99 2.0 1.0 1.5 3.6 114 chr2L 764559 intergenic not near genes chr2L 764616 intergenic not near genes chr2L 764673 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-509 12 chr2L 770466 770487 chr2L 772247 772267 Bari1 6 1781 2.0 2.0 2.0 2.0 1801 chr2L 770466 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772267 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-509 13 chr2L 877843 877857 chr2L 877921 877938 7 81 6.5 2.0 4.2 1.3 95 chr2L 877843 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877938 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-509 14 chr2L 922464 922493 chr2L 922544 922574 10 81 1.5 2.0 1.8 3.6 110 chr2L 922464 intergenic CG4341 + chr2L 922519 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_10_920001 chr2L_920001 RAL-509 15 chr2L 937050 937064 chr2L 937126 937140 5 76 2.0 4.0 3.0 1.2 90 chr2L 937050 intron CG4341 + chr2L 937095 intron CG4341 + chr2L 937140 intron CG4341 + chr2L_5_935001 chr2L_935001 RAL-509 16 chr2L 953496 953516 chr2L 953580 953592 6 79 1.5 1.0 1.2 2.7 96 chr2L 953496 exon CG4341 + chr2L 953544 intron CG4341 + chr2L 953592 intron CG4341 + chr2L_6_950001 chr2L_950001 RAL-509 17 chr2L 964557 964574 chr2L 964641 964658 7 83 2.5 6.0 4.2 1.3 101 chr2L 964557 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_7_960001 chr2L_960001 RAL-509 18 chr2L 1035558 1035592 chr2L 1035635 1035667 8 77 1.0 2.0 1.5 3.2 109 chr2L 1035558 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-509 19 chr2L 1042604 1042618 chr2L 1042695 1042709 4 91 1.0 0.0 0.5 2.7 105 chr2L 1042604 intron IA-2 - chr2L 1042656 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-509 20 chr2L 1164248 1164282 chr2L 1164334 1164368 6 86 2.5 4.5 3.5 1.3 120 chr2L 1164248 intergenic IntS14 +,CG5080 - chr2L 1164308 intergenic IntS14 +,CG5080 - chr2L 1164368 intergenic IntS14 +,CG5080 - chr2L_6_1160001 chr2L_1160001 RAL-509 21 chr2L 1220138 1220161 chr2L 1227603 1227627 blood 10 7466 1.5 4.0 2.8 2.6 7489 chr2L 1220138 intron CG42329 + chr2L 1223882 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-509 22 chr2L 1237992 1238003 chr2L 1238076 1238087 4 84 2.5 2.0 2.2 1.2 95 chr2L 1237992 intergenic not near genes chr2L 1238040 intergenic not near genes chr2L 1238087 intergenic not near genes chr2L_4_1235001 chr2L_1235001 RAL-509 23 chr2L 1261139 1261161 chr2L 1261220 1261234 5 79 0.0 0.5 0.2 4.2 95 chr2L 1261139 intron robo3 + chr2L 1261186 intron robo3 + chr2L 1261234 intron robo3 + chr2L_5_1260001 chr2L_1260001 RAL-509 24 chr2L 1450697 1450726 chr2L 1450782 1450811 10 84 3.0 2.0 2.5 2.9 114 chr2L 1450697 intergenic not near genes chr2L 1450754 intergenic not near genes chr2L 1450811 intergenic not near genes chr2L_10_1450001 chr2L_1450001 RAL-509 25 chr2L 1570693 1570716 chr2L 1573564 1573588 F-element 8 2872 6.5 6.5 6.5 1.1 2895 chr2L 1570693 intron haf + chr2L 1572140 intron haf + chr2L 1573588 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-509 26 chr2L 1635396 1635431 chr2L 1635532 1635567 11 136 0.0 4.5 2.2 3.4 171 chr2L 1635396 intergenic not near genes chr2L 1635482 intergenic not near genes chr2L 1635567 intergenic not near genes chr2L_11_1635001 chr2L_1635001 RAL-509 27 chr2L 1640324 1640350 chr2L 1640401 1640428 9 78 5.0 4.5 4.8 1.6 104 chr2L 1640324 intergenic not near genes chr2L 1640376 intergenic not near genes chr2L 1640428 intergenic not near genes chr2L_9_1640001 chr2L_1640001 RAL-509 28 chr2L 1674009 1674042 chr2L 1674239 1674273 8 226 7.0 2.0 4.5 1.5 264 chr2L 1674009 intron chinmo + chr2L 1674141 intron chinmo + chr2L 1674273 intron chinmo + chr2L_8_1670001 chr2L_1670001 RAL-509 29 chr2L 1678980 1679006 chr2L 1686445 1686471 blood 8 7465 1.5 3.5 2.5 2.3 7491 chr2L 1678980 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686471 intron chinmo + chr2L_8_1680001 chr2L_1680001 RAL-509 30 chr2L 1711354 1711382 chr2L 1711678 1711703 mdg3 8 322 3.5 4.5 4.0 1.6 349 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711703 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-509 31 chr2L 1878254 1878272 chr2L 1878377 1878395 5 124 5.0 6.5 5.8 0.7 141 chr2L 1878254 intron CG31663 - chr2L 1878324 intron CG31663 - chr2L 1878395 intron CG31663 - chr2L_5_1875001 chr2L_1875001 RAL-509 32 chr2L 1883418 1883446 chr2L 1884000 1884026 5 579 0.5 1.0 0.8 2.8 608 chr2L 1883418 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-509 33 chr2L 1925489 1925501 chr2L 1925566 1925578 7 77 4.5 3.0 3.8 1.5 89 chr2L 1925489 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925578 intron CG7337 + chr2L_7_1925001 chr2L_1925001 RAL-509 34 chr2L 1957952 1957955 chr2L 1958033 1958036 4 80 4.0 3.5 3.8 0.8 84 chr2L 1957952 intron erm - chr2L 1957994 intron erm - chr2L 1958036 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-509 35 chr2L 2068812 2068836 chr2L 2068989 2069018 5 181 3.5 3.5 3.5 1.1 206 chr2L 2068812 intron dpr3 - chr2L 2068915 intron dpr3 - chr2L 2069018 intron dpr3 - chr2L_5_2065001 chr2L_2065001 RAL-509 36 chr2L 2100381 2100395 chr2L 2109532 2109546 roo 9 9151 3.5 5.5 4.5 1.6 9165 chr2L 2100381 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-509 37 chr2L 2100396 2100408 chr2L 2109528 2109559 roo 8 9147 2.5 5.0 3.8 1.7 9163 chr2L 2100396 intron dpr3 - chr2L 2104978 intron dpr3 - chr2L 2109559 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-509 38 chr2L 2197648 2197679 chr2L 2197721 2197756 12 73 4.5 2.5 3.5 2.7 108 chr2L 2197648 5` UTR CG34172 - chr2L 2197702 5` UTR CG34172 - chr2L 2197756 5` UTR CG34172 - chr2L_12_2195001 chr2L_2195001 RAL-509 39 chr2L 2250417 2250444 chr2L 2251184 2251211 9 767 8.5 0.5 4.5 1.6 794 chr2L 2250417 intergenic Ser12 - chr2L 2250814 exon Ser12 - chr2L 2251211 exon Ser12 - chr2L_9_2250001 chr2L_2250001 RAL-509 40 chr2L 2260805 2260830 chr2L 2260891 2260916 10 86 2.0 3.5 2.8 2.6 111 chr2L 2260805 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260916 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-509 41 chr2L 2262311 2262336 chr2L 2262387 2262413 4 76 2.5 0.0 1.2 1.8 102 chr2L 2262311 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262413 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-509 42 chr2L 2372364 2372401 chr2L 2372450 2372481 4 84 0.0 0.5 0.2 3.3 117 chr2L 2372364 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372481 3` UTR CG3609 - chr2L_4_2370001 chr2L_2370001 RAL-509 43 chr2L 2392157 2392177 chr2L 2392267 2392287 7 110 2.0 0.5 1.2 3.2 130 chr2L 2392157 intron VGlut + chr2L 2392222 intron VGlut + chr2L 2392287 intron VGlut + chr2L_7_2390001 chr2L_2390001 RAL-509 44 chr2L 2427377 2427399 chr2L 2427463 2427485 5 86 2.0 3.5 2.8 1.3 108 chr2L 2427377 3` UTR CR44912 - chr2L 2427431 3` UTR CR44912 - chr2L 2427485 3` UTR CR44912 - chr2L_5_2425001 chr2L_2425001 RAL-509 45 chr2L 2439273 2439281 chr2L 2439349 2439358 4 76 8.0 5.5 6.8 0.5 85 chr2L 2439273 intron dpp + chr2L 2439316 intron dpp + chr2L 2439358 intron dpp + chr2L_4_2435001 chr2L_2435001 RAL-509 46 chr2L 2661219 2661233 chr2L 2663038 2663068 I-element 6 1831 1.5 1.5 1.5 2.4 1849 chr2L 2661219 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663068 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-509 47 chr2L 2698866 2698894 chr2L 2698953 2698981 9 87 1.5 2.5 2.0 3.0 115 chr2L 2698866 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_9_2695001 chr2L_2695001 RAL-509 48 chr2L 2715686 2715697 chr2L 2715762 2715773 5 76 4.5 2.0 3.2 1.2 87 chr2L 2715686 intron CG31690 + chr2L 2715730 intron CG31690 + chr2L 2715773 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-509 49 chr2L 2737899 2737921 chr2L 2737988 2738014 8 94 1.0 3.0 2.0 2.7 115 chr2L 2737899 exon CG31689 + chr2L 2737956 intron CG31689 + chr2L 2738014 intron CG31689 + chr2L_8_2735001 chr2L_2735001 RAL-509 50 chr2L 2826538 2826575 chr2L 2826630 2826660 5 91 0.0 2.0 1.0 2.5 122 chr2L 2826538 intron Duox - chr2L 2826599 intron Duox - chr2L 2826660 intron Duox - chr2L_5_2825001 chr2L_2825001 RAL-509 51 chr2L 2927960 2927968 chr2L 2928039 2928055 5 85 1.0 3.5 2.2 1.6 95 chr2L 2927960 intron lilli + chr2L 2928008 intron lilli + chr2L 2928055 intron lilli + chr2L_5_2925001 chr2L_2925001 RAL-509 52 chr2L 2937424 2937445 chr2L 2937501 2937522 6 77 4.0 3.0 3.5 1.3 98 chr2L 2937424 intron lilli + chr2L 2937473 intron lilli + chr2L 2937522 intron lilli + chr2L_6_2935001 chr2L_2935001 RAL-509 53 chr2L 3073029 3073065 chr2L 3078232 3078267 copia 16 5203 3.5 5.0 4.2 3.1 5238 chr2L 3073029 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_16_3075001 chr2L_3075001 RAL-509 54 chr2L 3192209 3192232 chr2L 3192320 3192343 5 111 2.0 5.5 3.8 1.0 134 chr2L 3192209 exon CG34393 - chr2L 3192276 intron CG34393 - chr2L 3192343 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-509 55 chr2L 3386240 3386270 chr2L 3386348 3386369 6 104 6.0 3.0 4.5 1.1 129 chr2L 3386240 intergenic not near genes chr2L 3386304 intergenic not near genes chr2L 3386369 intergenic CR45301 - chr2L_6_3385001 chr2L_3385001 RAL-509 56 chr2L 3395026 3395047 chr2L 3395107 3395129 10 82 3.0 4.5 3.8 2.1 103 chr2L 3395026 intergenic not near genes chr2L 3395078 intergenic not near genes chr2L 3395129 intergenic not near genes chr2L_10_3395001 chr2L_3395001 RAL-509 57 chr2L 3482149 3482174 chr2L 3482239 3482263 9 90 0.0 3.0 1.5 3.6 114 chr2L 3482149 intron CG15414 - chr2L 3482206 intron CG15414 - chr2L 3482263 intron CG15414 - chr2L_9_3480001 chr2L_3480001 RAL-509 58 chr2L 3508346 3508376 chr2L 3508424 3508454 9 78 1.5 2.0 1.8 3.2 108 chr2L 3508346 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-509 59 chr2L 3557014 3557042 chr2L 3557096 3557124 15 81 5.0 5.0 5.0 2.5 110 chr2L 3557014 intergenic not near genes chr2L 3557069 intergenic not near genes chr2L 3557124 intergenic not near genes chr2L_15_3555001 chr2L_3555001 RAL-509 60 chr2L 3584679 3584704 chr2L 3584752 3584780 7 71 6.5 2.0 4.2 1.3 101 chr2L 3584679 intergenic not near genes chr2L 3584730 intergenic not near genes chr2L 3584780 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-509 61 chr2L 3649792 3649805 chr2L 3654994 3655007 copia 4 5201 0.5 2.5 1.5 1.6 5215 chr2L 3649792 intron for - chr2L 3652400 intron for - chr2L 3655007 intron for - chr2L_4_3650001 chr2L_3650001 RAL-509 62 chr2L 3784809 3784824 chr2L 3785668 3785682 8 858 15.5 14.0 14.8 0.5 873 chr2L 3784809 intergenic CG31960 + chr2L 3785246 exon CG31960 + chr2L 3785682 intergenic CG31958 +,CG31960 + chr2L_8_3785001 chr2L_3785001 RAL-509 63 chr2L 3785599 3785611 chr2L 3786373 3786385 6 774 23.5 8.0 15.8 0.4 786 chr2L 3785599 3` UTR CG31960 + chr2L 3785992 exon CG31958 + chr2L 3786385 intergenic CG31958 + chr2L_6_3785001 chr2L_3785001 RAL-509 64 chr2L 3850159 3850183 chr2L 3850245 3850268 6 86 3.0 4.0 3.5 1.3 109 chr2L 3850159 intergenic not near genes chr2L 3850214 intergenic not near genes chr2L 3850268 intergenic not near genes chr2L_6_3850001 chr2L_3850001 RAL-509 65 chr2L 3893865 3893897 chr2L 3893951 3893983 5 86 0.5 2.0 1.2 2.3 118 chr2L 3893865 intron capu - chr2L 3893924 intron capu - chr2L 3893983 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-509 66 chr2L 4082896 4082914 chr2L 4083000 4083011 4 102 5.0 6.0 5.5 0.6 115 chr2L 4082896 intron ed + chr2L 4082954 intron ed + chr2L 4083011 intron ed + chr2L_4_4080001 chr2L_4080001 RAL-509 67 chr2L 4159408 4159440 chr2L 4159608 4159639 7 200 2.0 3.5 2.8 1.8 231 chr2L 4159408 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159639 intergenic not near genes chr2L_7_4155001 chr2L_4155001 RAL-509 68 chr2L 4166377 4166390 chr2L 4166460 4166472 7 82 1.5 3.0 2.2 2.2 95 chr2L 4166377 intergenic Or24a - chr2L 4166424 intergenic Or24a - chr2L 4166472 intergenic Or24a - chr2L_7_4165001 chr2L_4165001 RAL-509 69 chr2L 4192991 4193017 chr2L 4193072 4193098 12 80 0.5 1.0 0.8 6.7 107 chr2L 4192991 intron CG3714 - chr2L 4193044 intron CG3714 - chr2L 4193098 intron CG3714 - chr2L_12_4190001 chr2L_4190001 RAL-509 70 chr2L 4194553 4194587 chr2L 4194636 4194670 10 83 4.0 1.5 2.8 2.6 117 chr2L 4194553 intron CG3714 - chr2L 4194612 intron CG3714 - chr2L 4194670 intron CG3714 - chr2L_10_4190001 chr2L_4190001 RAL-509 71 chr2L 4232868 4232896 chr2L 4232954 4232983 15 84 4.0 5.0 4.5 2.7 115 chr2L 4232868 intergenic not near genes chr2L 4232926 intergenic not near genes chr2L 4232983 intergenic not near genes chr2L_15_4230001 chr2L_4230001 RAL-509 72 chr2L 4275078 4275106 chr2L 4275162 4275189 14 82 1.5 6.5 4.0 2.8 111 chr2L 4275078 intergenic not near genes chr2L 4275134 intergenic not near genes chr2L 4275189 intergenic not near genes chr2L_14_4275001 chr2L_4275001 RAL-509 73 chr2L 4351473 4351495 chr2L 4351549 4351570 7 73 5.5 2.0 3.8 1.5 97 chr2L 4351473 intergenic CR44700 + chr2L 4351522 intergenic CR44700 + chr2L 4351570 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-509 74 chr2L 4356629 4356645 chr2L 4356708 4356723 5 78 5.0 1.5 3.2 1.2 94 chr2L 4356629 intergenic not near genes chr2L 4356676 intergenic not near genes chr2L 4356723 intergenic not near genes chr2L_5_4355001 chr2L_4355001 RAL-509 75 chr2L 4601703 4601733 chr2L 4609144 4609174 mdg1 12 7441 3.0 3.0 3.0 3.0 7471 chr2L 4601703 intron dp - chr2L 4605438 intron dp - chr2L 4609174 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-509 76 chr2L 4676858 4676892 chr2L 4676937 4676971 14 79 1.5 3.0 2.2 4.4 113 chr2L 4676858 intergenic not near genes chr2L 4676914 intergenic not near genes chr2L 4676971 intergenic not near genes chr2L_14_4675001 chr2L_4675001 RAL-509 77 chr2L 4841069 4841102 chr2L 4841145 4841177 14 74 2.0 3.5 2.8 3.7 108 chr2L 4841069 intron CG12194 + chr2L 4841123 intron CG12194 + chr2L 4841177 exon CG12194 + chr2L_14_4840001 chr2L_4840001 RAL-509 78 chr2L 4869478 4869491 chr2L 4869558 4869570 6 80 3.5 4.5 4.0 1.2 92 chr2L 4869478 intron pog + chr2L 4869524 intron pog + chr2L 4869570 intron pog + chr2L_6_4865001 chr2L_4865001 RAL-509 79 chr2L 4918167 4918189 chr2L 4923238 4923262 jockey 4 5072 4.0 2.5 3.2 1.0 5095 chr2L 4918167 intron hoe1 - chr2L 4920714 intron hoe1 - chr2L 4923262 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-509 80 chr2L 4996090 4996116 chr2L 4996167 4996193 9 77 1.0 2.0 1.5 3.6 103 chr2L 4996090 intron Rtnl1 - chr2L 4996142 intron Rtnl1 - chr2L 4996193 intron Rtnl1 - chr2L_9_4995001 chr2L_4995001 RAL-509 81 chr2L 5005935 5005965 chr2L 5006015 5006045 6 80 2.0 1.0 1.5 2.4 110 chr2L 5005935 intron Rtnl1 - chr2L 5005990 intron Rtnl1 - chr2L 5006045 intron Rtnl1 - chr2L_6_5005001 chr2L_5005001 RAL-509 82 chr2L 5010866 5010878 chr2L 5010943 5010953 5 77 0.0 2.5 1.2 2.3 87 chr2L 5010866 intergenic CG31917 -,Tfb5 -,CG3887 + chr2L 5010910 intergenic CG3887 +,CG31917 -,Tfb5 - chr2L 5010953 5` UTR CG3887 + chr2L_5_5010001 chr2L_5010001 RAL-509 83 chr2L 5025133 5025149 chr2L 5025209 5025225 5 76 2.0 0.0 1.0 2.5 92 chr2L 5025133 intron vkg - chr2L 5025179 intron vkg - chr2L 5025225 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-509 84 chr2L 5040683 5040715 chr2L 5040779 5040811 4 96 1.0 1.5 1.2 1.8 128 chr2L 5040683 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040747 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040811 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_4_5040001 chr2L_5040001 RAL-509 85 chr2L 5117298 5117324 chr2L 5117379 5117395 5 78 0.5 0.0 0.2 4.2 97 chr2L 5117298 intron Msp300 + chr2L 5117346 intron Msp300 + chr2L 5117395 intron Msp300 + chr2L_5_5115001 chr2L_5115001 RAL-509 86 chr2L 5120976 5121001 chr2L 5121070 5121095 9 94 5.0 2.5 3.8 1.9 119 chr2L 5120976 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121095 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-509 87 chr2L 5342776 5342785 chr2L 5345156 5345165 Doc 5 2380 4.0 5.0 4.5 0.9 2389 chr2L 5342776 intergenic not near genes chr2L 5343970 intergenic not near genes chr2L 5345165 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-509 88 chr2L 5410689 5410718 chr2L 5410876 5410904 8 187 2.5 4.0 3.2 1.9 215 chr2L 5410689 intron H15 + chr2L 5410796 intron H15 + chr2L 5410904 intron H15 + chr2L_8_5410001 chr2L_5410001 RAL-509 89 chr2L 5501447 5501471 chr2L 5501523 5501547 4 76 1.0 1.5 1.2 1.8 100 chr2L 5501447 intergenic not near genes chr2L 5501497 intergenic not near genes chr2L 5501547 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-509 90 chr2L 5508536 5508559 chr2L 5508612 5508635 9 76 2.0 0.5 1.2 4.1 99 chr2L 5508536 intergenic not near genes chr2L 5508586 intergenic not near genes chr2L 5508635 intergenic not near genes chr2L_9_5505001 chr2L_5505001 RAL-509 91 chr2L 5511324 5511356 chr2L 5511406 5511439 10 83 2.0 4.5 3.2 2.4 115 chr2L 5511324 intergenic not near genes chr2L 5511382 intergenic not near genes chr2L 5511439 intergenic not near genes chr2L_10_5510001 chr2L_5510001 RAL-509 92 chr2L 5676985 5677002 chr2L 5677068 5677085 5 83 4.5 3.0 3.8 1.0 100 chr2L 5676985 intergenic not near genes chr2L 5677035 intergenic not near genes chr2L 5677085 intergenic not near genes chr2L_5_5675001 chr2L_5675001 RAL-509 93 chr2L 5758339 5758370 chr2L 5758581 5758613 11 240 3.0 1.5 2.2 3.4 274 chr2L 5758339 intron CG11030 + chr2L 5758476 intron CG11030 + chr2L 5758613 intron CG11030 + chr2L_11_5755001 chr2L_5755001 RAL-509 94 chr2L 5813808 5813833 chr2L 5814117 5814139 9 309 4.0 3.0 3.5 2.0 331 chr2L 5813808 intergenic not near genes chr2L 5813974 intergenic not near genes chr2L 5814139 intergenic not near genes chr2L_9_5810001 chr2L_5810001 RAL-509 95 chr2L 5814702 5814708 chr2L 5814785 5814791 4 83 3.5 3.0 3.2 1.0 89 chr2L 5814702 intergenic not near genes chr2L 5814746 intergenic not near genes chr2L 5814791 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-509 96 chr2L 5825079 5825104 chr2L 5825156 5825198 5 90 2.0 0.0 1.0 2.5 119 chr2L 5825079 5` UTR TrissinR + chr2L 5825138 5` UTR TrissinR + chr2L 5825198 5` UTR TrissinR + chr2L_5_5825001 chr2L_5825001 RAL-509 97 chr2L 5827715 5827740 chr2L 5836723 5836725 roo 11 9005 3.5 3.0 3.2 2.6 9010 chr2L 5827715 intron TrissinR + chr2L 5832220 intron TrissinR + chr2L 5836725 intron TrissinR + chr2L_11_5830001 chr2L_5830001 RAL-509 98 chr2L 5887604 5887629 chr2L 5887685 5887710 7 81 2.0 3.0 2.5 2.0 106 chr2L 5887604 3` UTR CR44577 - chr2L 5887657 3` UTR CR44577 - chr2L 5887710 3` UTR CR44577 - chr2L_7_5885001 chr2L_5885001 RAL-509 99 chr2L 5904464 5904470 chr2L 5904544 5904550 4 80 3.5 0.5 2.0 1.3 86 chr2L 5904464 intron CG9021 - chr2L 5904507 intron CG9021 - chr2L 5904550 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-509 100 chr2L 6021631 6021641 chr2L 6021708 6021711 4 76 2.5 0.0 1.2 1.8 80 chr2L 6021631 exon CG13996 + chr2L 6021671 exon CG13996 + chr2L 6021711 3` UTR CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-509 101 chr2L 6026920 6026950 chr2L 6027004 6027033 4 84 1.0 4.5 2.8 1.1 113 chr2L 6026920 intron CG9109 - chr2L 6026976 intron CG9109 - chr2L 6027033 intron CG9109 - chr2L_4_6025001 chr2L_6025001 RAL-509 102 chr2L 6200007 6200030 chr2L 6200158 6200181 5 151 1.5 1.0 1.2 2.3 174 chr2L 6200007 intron CG34380 + chr2L 6200094 intron CG34380 + chr2L 6200181 intron CG34380 + chr2L_5_6200001 chr2L_6200001 RAL-509 103 chr2L 6363160 6363182 chr2L 6366080 6366104 Burdock 7 2921 2.0 4.0 3.0 1.8 2944 chr2L 6363160 intergenic not near genes chr2L 6364632 intergenic not near genes chr2L 6366104 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-509 104 chr2L 6426859 6426886 chr2L 6445119 6445146 roo 5 18259 3.0 3.5 3.2 1.2 18287 chr2L 6426859 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-509 105 chr2L 6472643 6472655 chr2L 6472745 6472754 4 102 6.0 6.5 6.2 0.6 111 chr2L 6472643 intron mmy - chr2L 6472698 intron mmy - chr2L 6472754 intron mmy - chr2L_4_6470001 chr2L_6470001 RAL-509 106 chr2L 6544376 6544388 chr2L 6544466 6544480 5 91 3.5 3.5 3.5 1.1 104 chr2L 6544376 intron eya - chr2L 6544428 intron eya - chr2L 6544480 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-509 107 chr2L 6564846 6564879 chr2L 6564937 6564972 4 91 1.0 2.0 1.5 1.6 126 chr2L 6564846 3` UTR CG13766 - chr2L 6564909 3` UTR CG13766 - chr2L 6564972 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-509 108 chr2L 6799543 6799571 chr2L 6799631 6799658 8 88 0.0 0.0 0.0 8.0 115 chr2L 6799543 5` UTR CR43610 + chr2L 6799600 5` UTR CR43610 + chr2L 6799658 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-509 109 chr2L 6836501 6836534 chr2L 6836583 6836616 9 82 2.0 3.5 2.8 2.4 115 chr2L 6836501 intron sens-2 + chr2L 6836558 intron sens-2 + chr2L 6836616 intron sens-2 + chr2L_9_6835001 chr2L_6835001 RAL-509 110 chr2L 6850382 6850410 chr2L 6850465 6850493 9 83 2.0 3.5 2.8 2.4 111 chr2L 6850382 intergenic not near genes chr2L 6850438 intergenic not near genes chr2L 6850493 intergenic not near genes chr2L_9_6850001 chr2L_6850001 RAL-509 111 chr2L 6876781 6876798 chr2L 6882971 6882989 diver 5 6189 6.5 5.5 6.0 0.7 6208 chr2L 6876781 intron Nlg2 + chr2L 6879885 intron Nlg2 + chr2L 6882989 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-509 112 chr2L 6894548 6894569 chr2L 6894626 6894648 8 78 5.0 0.5 2.8 2.1 100 chr2L 6894548 intron Nlg2 + chr2L 6894598 intron Nlg2 + chr2L 6894648 intron Nlg2 + chr2L_8_6890001 chr2L_6890001 RAL-509 113 chr2L 7069979 7069986 chr2L 7070080 7070087 4 101 2.0 2.0 2.0 1.3 108 chr2L 7069979 3` UTR Pvf2 - chr2L 7070033 3` UTR Pvf2 - chr2L 7070087 3` UTR Pvf2 - chr2L_4_7070001 chr2L_7070001 RAL-509 114 chr2L 7081710 7081714 chr2L 7081791 7081795 4 81 2.5 1.5 2.0 1.3 85 chr2L 7081710 intron Pvf2 - chr2L 7081752 intron Pvf2 - chr2L 7081795 intron Pvf2 - chr2L_4_7080001 chr2L_7080001 RAL-509 115 chr2L 7082889 7082897 chr2L 7082976 7082984 5 87 2.5 4.0 3.2 1.2 95 chr2L 7082889 intron Pvf2 - chr2L 7082936 intron Pvf2 - chr2L 7082984 intron Pvf2 - chr2L_5_7080001 chr2L_7080001 RAL-509 116 chr2L 7111768 7111788 chr2L 7111853 7111873 4 85 0.0 0.0 0.0 4.0 105 chr2L 7111768 intron Pvf3 - chr2L 7111820 intron Pvf3 - chr2L 7111873 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-509 117 chr2L 7325926 7325949 chr2L 7325998 7326034 4 77 1.0 1.5 1.2 1.8 108 chr2L 7325926 intergenic not near genes chr2L 7325980 intergenic not near genes chr2L 7326034 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-509 118 chr2L 7343325 7343350 chr2L 7350441 7350466 roo 9 7114 5.5 5.0 5.2 1.5 7141 chr2L 7343325 intron Wnt6 + chr2L 7346896 intron Wnt6 + chr2L 7350466 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-509 119 chr2L 7399851 7399882 chr2L 7400234 7400265 10 383 3.5 4.0 3.8 2.1 414 chr2L 7399851 intergenic not near genes chr2L 7400058 intergenic not near genes chr2L 7400265 intergenic not near genes chr2L_10_7400001 chr2L_7400001 RAL-509 120 chr2L 7493675 7493704 chr2L 7493886 7493913 15 210 1.5 1.5 1.5 6.0 238 chr2L 7493675 intron Ziz - chr2L 7493794 intron Ziz - chr2L 7493913 intron Ziz - chr2L_15_7490001 chr2L_7490001 RAL-509 121 chr2L 7516169 7516194 chr2L 7516256 7516279 10 85 4.5 3.0 3.8 2.1 110 chr2L 7516169 intron RapGAP1 - chr2L 7516224 intron RapGAP1 - chr2L 7516279 intron RapGAP1 - chr2L_10_7515001 chr2L_7515001 RAL-509 122 chr2L 7555215 7555231 chr2L 7555292 7555308 7 77 0.5 2.5 1.5 2.8 93 chr2L 7555215 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_7_7555001 chr2L_7555001 RAL-509 123 chr2L 7900568 7900588 chr2L 7900682 7900702 7 114 3.5 2.5 3.0 1.8 134 chr2L 7900568 intron Snoo - chr2L 7900635 intron Snoo - chr2L 7900702 intron Snoo - chr2L_7_7900001 chr2L_7900001 RAL-509 124 chr2L 7959041 7959072 chr2L 7960451 7960483 pogo 6 1410 2.5 4.0 3.2 1.4 1442 chr2L 7959041 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960483 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-509 125 chr2L 7977092 7977108 chr2L 7984067 7984083 297 4 6974 3.5 2.0 2.8 1.1 6991 chr2L 7977092 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984083 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-509 126 chr2L 8013615 8013633 chr2L 8018820 8018838 copia 4 5205 2.0 0.0 1.0 2.0 5223 chr2L 8013615 intron Tg + chr2L 8016226 intron Tg + chr2L 8018838 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-509 127 chr2L 8044104 8044128 chr2L 8044183 8044207 6 76 2.5 3.0 2.8 1.6 103 chr2L 8044104 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-509 128 chr2L 8101137 8101158 chr2L 8101223 8101244 9 86 3.5 1.0 2.2 2.8 107 chr2L 8101137 intron Bsg + chr2L 8101190 intron Bsg + chr2L 8101244 intron Bsg + chr2L_9_8100001 chr2L_8100001 RAL-509 129 chr2L 8128033 8128061 chr2L 8128117 8128145 7 84 4.0 2.5 3.2 1.7 112 chr2L 8128033 intron CG8668 + chr2L 8128089 intron CG8668 + chr2L 8128145 intron CG8668 + chr2L_7_8125001 chr2L_8125001 RAL-509 130 chr2L 8143188 8143211 chr2L 8143339 8143362 5 151 2.0 1.5 1.8 1.8 174 chr2L 8143188 intron CG8552 - chr2L 8143275 intron CG8552 - chr2L 8143362 intron CG8552 - chr2L_5_8140001 chr2L_8140001 RAL-509 131 chr2L 8167144 8167179 chr2L 8167235 8167259 10 88 3.0 3.5 3.2 2.4 115 chr2L 8167144 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167259 intron Piezo + chr2L_10_8165001 chr2L_8165001 RAL-509 132 chr2L 8171277 8171301 chr2L 8171358 8171380 5 80 0.0 3.0 1.5 2.0 103 chr2L 8171277 intron Piezo + chr2L 8171328 intron Piezo + chr2L 8171380 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-509 133 chr2L 8230265 8230278 chr2L 8230388 8230404 4 125 2.5 1.5 2.0 1.3 139 chr2L 8230265 5` UTR Pvr - chr2L 8230334 intron Pvr - chr2L 8230404 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-509 134 chr2L 8244733 8244740 chr2L 8244854 8244860 6 121 2.0 2.5 2.2 1.9 127 chr2L 8244733 intron CG8086 - chr2L 8244796 intron CG8086 - chr2L 8244860 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-509 135 chr2L 8287320 8287345 chr2L 8287549 8287574 9 230 0.0 4.5 2.2 2.8 254 chr2L 8287320 intron Btk29A - chr2L 8287447 intron Btk29A - chr2L 8287574 intron Btk29A - chr2L_9_8285001 chr2L_8285001 RAL-509 136 chr2L 8723113 8723148 chr2L 8731490 8731525 Tirant 10 8377 2.0 3.5 2.8 2.6 8412 chr2L 8723113 intron raw - chr2L 8727319 intron raw - chr2L 8731525 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-509 137 chr2L 8799802 8799831 chr2L 8799918 8799947 13 113 1.5 3.5 2.5 3.7 145 chr2L 8799802 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799947 intergenic not near genes chr2L_13_8795001 chr2L_8795001 RAL-509 138 chr2L 8948036 8948064 chr2L 8948820 8948848 7 784 3.5 1.5 2.5 2.0 812 chr2L 8948036 intron C1GalTA - chr2L 8948442 intron C1GalTA - chr2L 8948848 intron C1GalTA - chr2L_7_8945001 chr2L_8945001 RAL-509 139 chr2L 8980456 8980490 chr2L 8980545 8980570 6 88 1.0 0.0 0.5 4.0 114 chr2L 8980456 intron CG13101 - chr2L 8980513 intron CG13101 - chr2L 8980570 intron CG13101 - chr2L_6_8980001 chr2L_8980001 RAL-509 140 chr2L 8997269 8997287 chr2L 8997633 8997651 4 364 14.5 18.0 16.2 0.2 382 chr2L 8997269 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997651 5` UTR CG18661 + chr2L_4_8995001 chr2L_8995001 RAL-509 141 chr2L 9040896 9040914 chr2L 9040971 9040990 5 76 3.0 5.0 4.0 1.0 94 chr2L 9040896 intergenic not near genes chr2L 9040943 intergenic not near genes chr2L 9040990 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-509 142 chr2L 9082700 9082728 chr2L 9082786 9082814 6 86 1.0 2.5 1.8 2.1 114 chr2L 9082700 intergenic not near genes chr2L 9082757 intergenic not near genes chr2L 9082814 intergenic not near genes chr2L_6_9080001 chr2L_9080001 RAL-509 143 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133322 10.5 16.0 13.2 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-509 144 chr2L 9202057 9202089 chr2L 9202133 9202165 5 72 3.0 3.0 3.0 1.2 108 chr2L 9202057 intron tai + chr2L 9202111 intron tai + chr2L 9202165 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-509 145 chr2L 9286954 9286988 chr2L 9287032 9287066 9 77 2.0 5.0 3.5 2.0 112 chr2L 9286954 intron Ggamma30A + chr2L 9287010 intron Ggamma30A + chr2L 9287066 intron Ggamma30A + chr2L_9_9285001 chr2L_9285001 RAL-509 146 chr2L 9317429 9317562 chr2L 9317547 9317838 7 253 0.0 0.0 0.0 7.0 409 chr2L 9317429 intergenic not near genes chr2L 9317634 intergenic not near genes chr2L 9317838 intergenic not near genes chr2L_7_9315001 chr2L_9315001 RAL-509 147 chr2L 9380247 9380254 chr2L 9380342 9380349 6 95 4.5 1.0 2.8 1.6 102 chr2L 9380247 exon Shawl - chr2L 9380298 intron Shawl - chr2L 9380349 intron Shawl - chr2L_6_9380001 chr2L_9380001 RAL-509 148 chr2L 9421017 9421029 chr2L 9421161 9421173 5 144 0.0 4.5 2.2 1.6 156 chr2L 9421017 intron Mco1 + chr2L 9421095 intron Mco1 + chr2L 9421173 intron Mco1 + chr2L_5_9420001 chr2L_9420001 RAL-509 149 chr2L 9454981 9455006 chr2L 9455083 9455107 4 102 3.0 2.5 2.8 1.1 126 chr2L 9454981 intron numb + chr2L 9455044 intron numb + chr2L 9455107 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-509 150 chr2L 9543763 9543788 chr2L 9543840 9543865 4 77 2.0 1.0 1.5 1.6 102 chr2L 9543763 intergenic Cpr30B +,CG13113 + chr2L 9543814 intergenic Cpr30B +,CG13113 + chr2L 9543865 intergenic Cpr30B +,CG13113 + chr2L_4_9540001 chr2L_9540001 RAL-509 151 chr2L 9933619 9933641 chr2L 9933746 9933768 8 127 3.0 2.5 2.8 2.1 149 chr2L 9933619 intergenic Cpr30F - chr2L 9933694 intergenic not near genes chr2L 9933768 intergenic not near genes chr2L_8_9930001 chr2L_9930001 RAL-509 152 chr2L 9973725 9973756 chr2L 9980843 9980875 HMS-Beagle 9 7117 5.5 5.0 5.2 1.5 7150 chr2L 9973725 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-509 153 chr2L 9986349 9986381 chr2L 9986444 9986474 8 93 4.5 4.0 4.2 1.5 125 chr2L 9986349 intron bib + chr2L 9986412 intron bib + chr2L 9986474 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-509 154 chr2L 10019553 10019577 chr2L 10019635 10019660 7 82 1.0 3.5 2.2 2.2 107 chr2L 10019553 intergenic not near genes chr2L 10019606 intergenic not near genes chr2L 10019660 intergenic not near genes chr2L_7_10015001 chr2L_10015001 RAL-509 155 chr2L 10051728 10051751 chr2L 10051813 10051835 12 81 1.5 6.5 4.0 2.4 107 chr2L 10051728 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051835 5` UTR CR44874 + chr2L_12_10050001 chr2L_10050001 RAL-509 156 chr2L 10095630 10095659 chr2L 10095710 10095739 10 80 1.0 2.0 1.5 4.0 109 chr2L 10095630 intron CG44153 - chr2L 10095684 intron CG44153 - chr2L 10095739 intron CG44153 - chr2L_10_10095001 chr2L_10095001 RAL-509 157 chr2L 10105284 10105300 chr2L 10105360 10105375 5 74 2.5 2.5 2.5 1.4 91 chr2L 10105284 intron,intron CG44153 -,CG34109 + chr2L 10105330 intron,intron CG44153 -,CG34109 + chr2L 10105375 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-509 158 chr2L 10105301 10105315 chr2L 10105356 10105391 5 72 1.5 2.0 1.8 1.8 90 chr2L 10105301 intron,intron CG44153 -,CG34109 + chr2L 10105346 intron,intron CG44153 -,CG34109 + chr2L 10105391 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-509 159 chr2L 10126609 10126639 chr2L 10126693 10126723 8 84 1.0 2.0 1.5 3.2 114 chr2L 10126609 intron CG44153 - chr2L 10126666 intron CG44153 - chr2L 10126723 intron CG44153 - chr2L_8_10125001 chr2L_10125001 RAL-509 160 chr2L 10136238 10136267 chr2L 10136320 10136349 7 82 5.5 0.5 3.0 1.8 111 chr2L 10136238 intron CG44153 - chr2L 10136294 intron CG44153 - chr2L 10136349 intron CG44153 - chr2L_7_10135001 chr2L_10135001 RAL-509 161 chr2L 10153207 10153236 chr2L 10153286 10153315 16 77 1.5 3.5 2.5 4.6 108 chr2L 10153207 intron,exon CG44153 -,CG4839 + chr2L 10153261 intron,intron CG44153 -,CG4839 + chr2L 10153315 intron,intron CG44153 -,CG4839 + chr2L_16_10150001 chr2L_10150001 RAL-509 162 chr2L 10156324 10156354 chr2L 10163790 10163822 blood 14 7469 4.0 2.0 3.0 3.5 7498 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160073 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_14_10160001 chr2L_10160001 RAL-509 163 chr2L 10474388 10474409 chr2L 10474469 10474488 6 80 3.0 2.0 2.5 1.7 100 chr2L 10474388 intergenic RluA-1 - chr2L 10474438 intergenic RluA-1 - chr2L 10474488 intergenic RluA-1 - chr2L_6_10470001 chr2L_10470001 RAL-509 164 chr2L 10480311 10480335 chr2L 10480389 10480413 9 77 0.5 0.0 0.2 7.5 102 chr2L 10480311 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480413 intron RluA-2 + chr2L_9_10480001 chr2L_10480001 RAL-509 165 chr2L 10490279 10490303 chr2L 10490361 10490385 11 81 3.5 2.0 2.8 2.9 106 chr2L 10490279 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490385 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_11_10490001 chr2L_10490001 RAL-509 166 chr2L 10537406 10537425 chr2L 10537546 10537565 5 140 3.0 2.0 2.5 1.4 159 chr2L 10537406 intergenic not near genes chr2L 10537486 intergenic not near genes chr2L 10537565 intergenic not near genes chr2L_5_10535001 chr2L_10535001 RAL-509 167 chr2L 10563911 10563948 chr2L 10564004 10564038 6 92 1.5 2.0 1.8 2.1 127 chr2L 10563911 intron Trim9 + chr2L 10563974 intron Trim9 + chr2L 10564038 intron Trim9 + chr2L_6_10560001 chr2L_10560001 RAL-509 168 chr2L 10580793 10580824 chr2L 10580874 10580903 7 80 2.5 3.5 3.0 1.8 110 chr2L 10580793 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580903 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-509 169 chr2L 10592858 10592875 chr2L 10600518 10600537 opus 4 7662 0.0 5.0 2.5 1.1 7679 chr2L 10592858 intron Trim9 + chr2L 10596698 intron Trim9 + chr2L 10600537 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-509 170 chr2L 10634753 10634785 chr2L 10634832 10634865 8 80 5.0 0.0 2.5 2.3 112 chr2L 10634753 intron CG7329 - chr2L 10634809 intron CG7329 - chr2L 10634865 intron CG7329 - chr2L_8_10630001 chr2L_10630001 RAL-509 171 chr2L 10656594 10656607 chr2L 10656670 10656683 5 76 1.5 1.0 1.2 2.3 89 chr2L 10656594 intergenic not near genes chr2L 10656638 intergenic not near genes chr2L 10656683 intergenic not near genes chr2L_5_10655001 chr2L_10655001 RAL-509 172 chr2L 10673752 10673763 chr2L 10673834 10673844 4 82 3.0 2.0 2.5 1.1 92 chr2L 10673752 intergenic not near genes chr2L 10673798 intergenic not near genes chr2L 10673844 intergenic not near genes chr2L_4_10670001 chr2L_10670001 RAL-509 173 chr2L 10862843 10862872 chr2L 10864457 10864485 Rt1c 10 1612 6.5 3.5 5.0 1.7 1642 chr2L 10862843 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864485 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-509 174 chr2L 10912987 10913001 chr2L 10913066 10913080 5 78 5.5 5.5 5.5 0.8 93 chr2L 10912987 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913080 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-509 175 chr2L 10946961 10946977 chr2L 10956176 10956190 roo 7 9215 2.0 7.5 4.8 1.2 9229 chr2L 10946961 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-509 176 chr2L 11055048 11055075 chr2L 11055133 11055160 4 85 2.0 1.0 1.5 1.6 112 chr2L 11055048 intron Samuel - chr2L 11055104 intron Samuel - chr2L 11055160 intron Samuel - chr2L_4_11055001 chr2L_11055001 RAL-509 177 chr2L 11142526 11142536 chr2L 11142607 11142618 4 82 3.0 0.5 1.8 1.4 92 chr2L 11142526 intron Gyc32E - chr2L 11142572 intron Gyc32E - chr2L 11142618 intron Gyc32E - chr2L_4_11140001 chr2L_11140001 RAL-509 178 chr2L 11169470 11169503 chr2L 11169606 11169638 5 135 1.5 1.5 1.5 2.0 168 chr2L 11169470 intron Ca-beta - chr2L 11169554 intron Ca-beta - chr2L 11169638 intron Ca-beta - chr2L_5_11165001 chr2L_11165001 RAL-509 179 chr2L 11246764 11246792 chr2L 11246863 11246891 8 99 1.5 1.5 1.5 3.2 127 chr2L 11246764 intron ab + chr2L 11246828 intron ab + chr2L 11246891 intron ab + chr2L_8_11245001 chr2L_11245001 RAL-509 180 chr2L 11356410 11356423 chr2L 11356521 11356533 5 110 4.5 2.5 3.5 1.1 123 chr2L 11356410 intergenic not near genes chr2L 11356472 intergenic not near genes chr2L 11356533 intergenic not near genes chr2L_5_11355001 chr2L_11355001 RAL-509 181 chr2L 11380611 11380643 chr2L 11380688 11380720 9 77 1.0 1.0 1.0 4.5 109 chr2L 11380611 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380720 intergenic not near genes chr2L_9_11380001 chr2L_11380001 RAL-509 182 chr2L 11455562 11455596 chr2L 11455647 11455681 7 85 1.0 1.5 1.2 3.2 119 chr2L 11455562 intergenic not near genes chr2L 11455622 intergenic not near genes chr2L 11455681 intergenic not near genes chr2L_7_11455001 chr2L_11455001 RAL-509 183 chr2L 11537188 11537211 chr2L 11537268 11537280 4 77 2.0 0.5 1.2 1.8 92 chr2L 11537188 intergenic CG43438 + chr2L 11537234 intergenic CG43438 + chr2L 11537280 intergenic CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-509 184 chr2L 11563645 11563667 chr2L 11568849 11568871 copia 10 5204 3.5 2.5 3.0 2.5 5226 chr2L 11563645 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-509 185 chr2L 11610544 11610572 chr2L 11610623 11610650 4 78 2.5 1.0 1.8 1.4 106 chr2L 11610544 intron,3` UTR kek2 +,spag4 - chr2L 11610597 intron,3` UTR kek2 +,spag4 - chr2L 11610650 intron,3` UTR kek2 +,spag4 - chr2L_4_11610001 chr2L_11610001 RAL-509 186 chr2L 11612665 11612689 chr2L 11612751 11612777 12 88 3.5 5.0 4.2 2.3 112 chr2L 11612665 intron kek2 + chr2L 11612721 intron kek2 + chr2L 11612777 intron kek2 + chr2L_12_11610001 chr2L_11610001 RAL-509 187 chr2L 11614054 11614086 chr2L 11615546 11615567 hopper2 8 1490 0.5 2.5 1.5 3.2 1513 chr2L 11614054 intron kek2 + chr2L 11614810 intron kek2 + chr2L 11615567 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-509 188 chr2L 11657975 11658002 chr2L 11658060 11658087 6 85 1.0 6.5 3.8 1.2 112 chr2L 11657975 3` UTR CG43167 + chr2L 11658031 intergenic CG43167 + chr2L 11658087 intergenic CG43167 + chr2L_6_11655001 chr2L_11655001 RAL-509 189 chr2L 11672139 11672163 chr2L 11672246 11672270 8 107 3.0 1.0 2.0 2.7 131 chr2L 11672139 intergenic not near genes chr2L 11672204 intergenic not near genes chr2L 11672270 intergenic not near genes chr2L_8_11670001 chr2L_11670001 RAL-509 190 chr2L 11713511 11713540 chr2L 11720976 11721007 blood 7 7467 4.0 3.5 3.8 1.5 7496 chr2L 11713511 intergenic not near genes chr2L 11717259 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-509 191 chr2L 11750326 11750339 chr2L 11750612 11750625 6 286 1.0 1.0 1.0 3.0 299 chr2L 11750326 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750625 intergenic not near genes chr2L_6_11750001 chr2L_11750001 RAL-509 192 chr2L 11844184 11844218 chr2L 11844266 11844290 4 80 1.5 1.0 1.2 1.8 106 chr2L 11844184 intron Pde1c - chr2L 11844237 intron Pde1c - chr2L 11844290 intron Pde1c - chr2L_4_11840001 chr2L_11840001 RAL-509 193 chr2L 11952995 11953013 chr2L 11953073 11953092 6 78 4.0 2.0 3.0 1.5 97 chr2L 11952995 3` UTR CR43314 - chr2L 11953044 3` UTR CR43314 - chr2L 11953092 3` UTR CR43314 - chr2L_6_11950001 chr2L_11950001 RAL-509 194 chr2L 12022084 12022108 chr2L 12022759 12022783 15 675 6.0 1.5 3.8 3.1 699 chr2L 12022084 intergenic not near genes chr2L 12022434 intergenic not near genes chr2L 12022783 intergenic not near genes chr2L_15_12020001 chr2L_12020001 RAL-509 195 chr2L 12086732 12086758 chr2L 12086846 12086872 5 112 0.5 5.0 2.8 1.3 140 chr2L 12086732 5` UTR CR44593 + chr2L 12086802 5` UTR CR44593 + chr2L 12086872 5` UTR CR44593 + chr2L_5_12085001 chr2L_12085001 RAL-509 196 chr2L 12121898 12121916 chr2L 12121980 12121998 5 82 1.5 2.5 2.0 1.7 100 chr2L 12121898 intron CG17211 + chr2L 12121948 intron CG17211 + chr2L 12121998 intron CG17211 + chr2L_5_12120001 chr2L_12120001 RAL-509 197 chr2L 12234035 12234063 chr2L 12234130 12234158 6 95 3.0 5.0 4.0 1.2 123 chr2L 12234035 intron aret + chr2L 12234096 intron aret + chr2L 12234158 intron aret + chr2L_6_12230001 chr2L_12230001 RAL-509 198 chr2L 12245515 12245543 chr2L 12245602 12245629 4 86 0.5 0.0 0.2 3.3 114 chr2L 12245515 intron aret + chr2L 12245572 intron aret + chr2L 12245629 intron aret + chr2L_4_12245001 chr2L_12245001 RAL-509 199 chr2L 12487893 12487920 chr2L 12487974 12488000 6 81 5.0 4.0 4.5 1.1 107 chr2L 12487893 intron bun - chr2L 12487946 intron bun - chr2L 12488000 intron bun - chr2L_6_12485001 chr2L_12485001 RAL-509 200 chr2L 12529237 12529256 chr2L 12529389 12529408 9 152 1.0 4.5 2.8 2.4 171 chr2L 12529237 intron bun - chr2L 12529322 intron bun - chr2L 12529408 intron bun - chr2L_9_12525001 chr2L_12525001 RAL-509 201 chr2L 12558320 12558353 chr2L 12565448 12565482 HMS-Beagle 10 7129 2.5 1.0 1.8 3.6 7162 chr2L 12558320 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_10_12560001 chr2L_12560001 RAL-509 202 chr2L 12653036 12653062 chr2L 12653113 12653139 9 75 2.0 5.5 3.8 1.9 103 chr2L 12653036 intergenic not near genes chr2L 12653088 intergenic not near genes chr2L 12653139 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-509 203 chr2L 12731056 12731088 chr2L 12735823 12735855 F-element 5 4767 0.0 4.5 2.2 1.6 4799 chr2L 12731056 intron MRP + chr2L 12733456 intron MRP + chr2L 12735855 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-509 204 chr2L 12751308 12751339 chr2L 12751391 12751422 14 83 2.5 5.0 3.8 2.9 114 chr2L 12751308 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751422 intergenic not near genes chr2L_14_12750001 chr2L_12750001 RAL-509 205 chr2L 12763863 12763870 chr2L 12764063 12764070 BS 4 200 0.0 0.5 0.2 3.3 207 chr2L 12763863 intergenic not near genes chr2L 12763966 intergenic not near genes chr2L 12764070 intergenic not near genes chr2L_4_12760001 chr2L_12760001 RAL-509 206 chr2L 12791601 12791615 chr2L 12795276 12795290 F-element 5 3675 3.5 0.0 1.8 1.8 3689 chr2L 12791601 intergenic not near genes chr2L 12793446 intergenic not near genes chr2L 12795290 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-509 207 chr2L 12807445 12807461 chr2L 12807527 12807543 4 81 2.5 4.5 3.5 0.9 98 chr2L 12807445 intergenic CR43818 - chr2L 12807494 intergenic CR43818 - chr2L 12807543 intergenic CR43818 - chr2L_4_12805001 chr2L_12805001 RAL-509 208 chr2L 12848444 12848465 chr2L 12848531 12848553 4 86 0.5 5.0 2.8 1.1 109 chr2L 12848444 intergenic not near genes chr2L 12848498 intergenic not near genes chr2L 12848553 intergenic not near genes chr2L_4_12845001 chr2L_12845001 RAL-509 209 chr2L 12855302 12855311 chr2L 12855385 12855396 4 84 0.0 1.0 0.5 2.7 94 chr2L 12855302 intergenic not near genes chr2L 12855349 intergenic not near genes chr2L 12855396 intergenic not near genes chr2L_4_12855001 chr2L_12855001 RAL-509 210 chr2L 12861718 12861724 chr2L 12863175 12863183 hobo 5 1461 4.0 7.5 5.8 0.7 1465 chr2L 12861718 intergenic not near genes chr2L 12862450 intergenic not near genes chr2L 12863183 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-509 211 chr2L 12905477 12905499 chr2L 12905561 12905583 10 84 7.0 1.5 4.2 1.9 106 chr2L 12905477 intergenic not near genes chr2L 12905530 intergenic not near genes chr2L 12905583 intergenic not near genes chr2L_10_12905001 chr2L_12905001 RAL-509 212 chr2L 12933853 12933883 chr2L 12941319 12941350 blood 8 7466 2.5 2.0 2.2 2.5 7497 chr2L 12933853 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-509 213 chr2L 13047952 13047971 chr2L 13048077 13048096 5 125 2.5 4.0 3.2 1.2 144 chr2L 13047952 intron CG9932 - chr2L 13048024 intron CG9932 - chr2L 13048096 intron CG9932 - chr2L_5_13045001 chr2L_13045001 RAL-509 214 chr2L 13076158 13076180 chr2L 13076512 13076534 6 354 10.0 22.0 16.0 0.4 376 chr2L 13076158 intergenic not near genes chr2L 13076346 intergenic not near genes chr2L 13076534 intergenic not near genes chr2L_6_13075001 chr2L_13075001 RAL-509 215 chr2L 13147948 13147961 chr2L 13148028 13148042 4 81 3.5 0.0 1.8 1.4 94 chr2L 13147948 intergenic not near genes chr2L 13147995 intergenic not near genes chr2L 13148042 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-509 216 chr2L 13266377 13266403 chr2L 13266465 13266490 8 88 4.0 2.5 3.2 1.9 113 chr2L 13266377 intron CG44085 + chr2L 13266434 intron CG44085 + chr2L 13266490 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-509 217 chr2L 13346038 13346054 chr2L 13346121 13346137 4 82 3.5 3.0 3.2 1.0 99 chr2L 13346038 intergenic not near genes chr2L 13346088 intergenic not near genes chr2L 13346137 intergenic not near genes chr2L_4_13345001 chr2L_13345001 RAL-509 218 chr2L 13405647 13405680 chr2L 13410444 13410477 Doc 17 4797 3.0 1.5 2.2 5.3 4830 chr2L 13405647 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_17_13405001 chr2L_13405001 RAL-509 219 chr2L 13449469 13449493 chr2L 13456904 13456929 Quasimodo 8 7436 1.0 5.5 3.2 1.9 7460 chr2L 13449469 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453199 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_8_13450001 chr2L_13450001 RAL-509 220 chr2L 13481445 13481474 chr2L 13482052 13482081 jockey 10 607 4.5 5.5 5.0 1.7 636 chr2L 13481445 intron CG42784 + chr2L 13481763 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_10_13480001 chr2L_13480001 RAL-509 221 chr2L 13567462 13567493 chr2L 13567538 13567571 9 77 2.5 2.5 2.5 2.6 109 chr2L 13567462 intron kuz + chr2L 13567516 intron kuz + chr2L 13567571 intron kuz + chr2L_9_13565001 chr2L_13565001 RAL-509 222 chr2L 13644516 13644546 chr2L 13644595 13644598 5 73 2.0 1.5 1.8 1.8 82 chr2L 13644516 intergenic not near genes chr2L 13644557 intergenic not near genes chr2L 13644598 intergenic not near genes chr2L_5_13640001 chr2L_13640001 RAL-509 223 chr2L 13692156 13692187 chr2L 13692232 13692239 8 73 3.0 3.0 3.0 2.0 83 chr2L 13692156 intron CG31814 - chr2L 13692198 intron CG31814 - chr2L 13692239 intron CG31814 - chr2L_8_13690001 chr2L_13690001 RAL-509 224 chr2L 13701887 13701902 chr2L 13701966 13701980 6 78 3.5 2.0 2.8 1.6 93 chr2L 13701887 intron CG31814 - chr2L 13701934 intron CG31814 - chr2L 13701980 intron CG31814 - chr2L_6_13700001 chr2L_13700001 RAL-509 225 chr2L 13747320 13747332 chr2L 13747420 13747431 7 100 2.5 3.5 3.0 1.8 111 chr2L 13747320 intron,intron CR44846 +,TM9SF4 + chr2L 13747376 intron,intron CR44846 +,TM9SF4 + chr2L 13747431 intron,intron CR44846 +,TM9SF4 + chr2L_7_13745001 chr2L_13745001 RAL-509 226 chr2L 13752698 13752720 chr2L 13752859 13752887 5 166 1.5 1.5 1.5 2.0 189 chr2L 13752698 intron,intron CR44846 +,TM9SF4 + chr2L 13752792 intron,intron CR44846 +,TM9SF4 + chr2L 13752887 intron,intron CR44846 +,TM9SF4 + chr2L_5_13750001 chr2L_13750001 RAL-509 227 chr2L 13761806 13761834 chr2L 13762917 13762945 Doc 10 1108 6.0 2.5 4.2 1.9 1139 chr2L 13761806 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_10_13760001 chr2L_13760001 RAL-509 228 chr2L 13853087 13853116 chr2L 13862235 13862266 roo 17 9150 5.5 4.0 4.8 2.9 9179 chr2L 13853087 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_17_13855001 chr2L_13855001 RAL-509 229 chr2L 13913588 13913605 chr2L 13913701 13913718 6 113 4.5 4.0 4.2 1.2 130 chr2L 13913588 intergenic not near genes chr2L 13913653 intergenic not near genes chr2L 13913718 intergenic not near genes chr2L_6_13910001 chr2L_13910001 RAL-509 230 chr2L 13917730 13917761 chr2L 13917831 13917862 6 101 1.0 1.0 1.0 3.0 132 chr2L 13917730 intron Ance-3 + chr2L 13917796 intron Ance-3 + chr2L 13917862 intron Ance-3 + chr2L_6_13915001 chr2L_13915001 RAL-509 231 chr2L 14012429 14012455 chr2L 14012508 14012535 9 79 1.5 1.5 1.5 3.6 106 chr2L 14012429 intergenic not near genes chr2L 14012482 intergenic not near genes chr2L 14012535 intergenic bgm + chr2L_9_14010001 chr2L_14010001 RAL-509 232 chr2L 14222301 14222322 chr2L 14222388 14222407 5 87 1.5 1.0 1.2 2.3 106 chr2L 14222301 intron Dyrk2 - chr2L 14222354 intron Dyrk2 - chr2L 14222407 intron Dyrk2 - chr2L_5_14220001 chr2L_14220001 RAL-509 233 chr2L 14235715 14235739 chr2L 14235808 14235832 10 92 0.0 1.0 0.5 6.7 117 chr2L 14235715 5` UTR CR44728 + chr2L 14235774 5` UTR CR44728 + chr2L 14235832 5` UTR CR44728 + chr2L_10_14235001 chr2L_14235001 RAL-509 234 chr2L 14269568 14269583 chr2L 14269648 14269663 7 80 5.0 1.5 3.2 1.7 95 chr2L 14269568 intron wb + chr2L 14269616 intron wb + chr2L 14269663 intron wb + chr2L_7_14265001 chr2L_14265001 RAL-509 235 chr2L 14367867 14367890 chr2L 14367947 14367970 4 80 2.0 3.5 2.8 1.1 103 chr2L 14367867 intergenic not near genes chr2L 14367918 intergenic not near genes chr2L 14367970 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-509 236 chr2L 14564209 14564228 chr2L 14564284 14564303 6 75 2.5 7.5 5.0 1.0 94 chr2L 14564209 intergenic CG3473 - chr2L 14564256 intergenic not near genes chr2L 14564303 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-509 237 chr2L 14694266 14694290 chr2L 14694387 14694413 8 123 0.5 1.0 0.8 4.4 147 chr2L 14694266 intergenic not near genes chr2L 14694340 intergenic not near genes chr2L 14694413 intergenic not near genes chr2L_8_14690001 chr2L_14690001 RAL-509 238 chr2L 14721604 14721633 chr2L 14721682 14721710 7 77 2.5 3.5 3.0 1.8 106 chr2L 14721604 intergenic not near genes chr2L 14721657 intergenic not near genes chr2L 14721710 intergenic not near genes chr2L_7_14720001 chr2L_14720001 RAL-509 239 chr2L 14761909 14761915 chr2L 14762008 14762014 6 99 3.0 4.0 3.5 1.3 105 chr2L 14761909 3` UTR CG4691 + chr2L 14761962 intergenic CR44858 +,CG4691 + chr2L 14762014 5` UTR CR44858 + chr2L_6_14760001 chr2L_14760001 RAL-509 240 chr2L 14771832 14771863 chr2L 14771915 14771945 9 83 0.5 4.5 2.5 2.6 113 chr2L 14771832 intergenic not near genes chr2L 14771888 intergenic not near genes chr2L 14771945 intergenic not near genes chr2L_9_14770001 chr2L_14770001 RAL-509 241 chr2L 14772713 14772738 chr2L 14772812 14772837 5 99 1.0 3.0 2.0 1.7 124 chr2L 14772713 intergenic not near genes chr2L 14772775 intergenic not near genes chr2L 14772837 intergenic not near genes chr2L_5_14770001 chr2L_14770001 RAL-509 242 chr2L 14781570 14781590 chr2L 14781671 14781691 7 101 3.0 1.5 2.2 2.2 121 chr2L 14781570 intergenic not near genes chr2L 14781630 intergenic not near genes chr2L 14781691 intergenic not near genes chr2L_7_14780001 chr2L_14780001 RAL-509 243 chr2L 14803877 14803913 chr2L 14809080 14809098 copia 8 5200 3.0 5.0 4.0 1.6 5221 chr2L 14803877 intergenic not near genes chr2L 14806488 intergenic not near genes chr2L 14809098 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-509 244 chr2L 14831090 14831115 chr2L 14831192 14831217 6 102 1.5 1.5 1.5 2.4 127 chr2L 14831090 intergenic not near genes chr2L 14831154 intergenic not near genes chr2L 14831217 intergenic not near genes chr2L_6_14830001 chr2L_14830001 RAL-509 245 chr2L 14889951 14889984 chr2L 14890376 14890401 jockey 6 424 5.5 1.0 3.2 1.4 450 chr2L 14889951 intergenic not near genes chr2L 14890176 intergenic not near genes chr2L 14890401 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-509 246 chr2L 14984384 14984404 chr2L 14991981 14992006 opus 6 7601 3.5 2.0 2.8 1.6 7622 chr2L 14984384 intron mol - chr2L 14988195 intron mol - chr2L 14992006 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-509 247 chr2L 15000858 15000881 chr2L 15000985 15001007 6 126 19.5 14.5 17.0 0.3 149 chr2L 15000858 intergenic not near genes chr2L 15000932 intergenic not near genes chr2L 15001007 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-509 248 chr2L 15021442 15021470 chr2L 15021518 15021546 12 76 3.0 1.0 2.0 4.0 104 chr2L 15021442 intron GABA-B-R1 + chr2L 15021494 intron GABA-B-R1 + chr2L 15021546 intron GABA-B-R1 + chr2L_12_15020001 chr2L_15020001 RAL-509 249 chr2L 15026021 15026041 chr2L 15026102 15026115 8 80 6.5 0.0 3.2 1.9 94 chr2L 15026021 exon GABA-B-R1 + chr2L 15026068 intron GABA-B-R1 + chr2L 15026115 intron GABA-B-R1 + chr2L_8_15025001 chr2L_15025001 RAL-509 250 chr2L 15179512 15179542 chr2L 15179591 15179622 7 80 3.0 6.0 4.5 1.3 110 chr2L 15179512 intron CG4168 - chr2L 15179567 intron CG4168 - chr2L 15179622 intron CG4168 - chr2L_7_15175001 chr2L_15175001 RAL-509 251 chr2L 15204222 15204309 chr2L 15204299 15204590 7 250 0.5 0.5 0.5 4.7 368 chr2L 15204222 intergenic CR43357 + chr2L 15204406 intergenic CR43357 + chr2L 15204590 intergenic not near genes chr2L_7_15200001 chr2L_15200001 RAL-509 252 chr2L 15230765 15230790 chr2L 15230850 15230874 4 84 3.5 1.5 2.5 1.1 109 chr2L 15230765 intron ZnT35C - chr2L 15230820 intron ZnT35C - chr2L 15230874 intron ZnT35C - chr2L_4_15230001 chr2L_15230001 RAL-509 253 chr2L 15309458 15309479 chr2L 15309623 15309645 7 166 2.5 1.5 2.0 2.3 187 chr2L 15309458 intergenic not near genes chr2L 15309552 intergenic not near genes chr2L 15309645 intergenic not near genes chr2L_7_15305001 chr2L_15305001 RAL-509 254 chr2L 15343538 15343565 chr2L 15343623 15343649 11 85 2.5 0.0 1.2 5.0 111 chr2L 15343538 intergenic not near genes chr2L 15343594 intergenic not near genes chr2L 15343649 intergenic not near genes chr2L_11_15340001 chr2L_15340001 RAL-509 255 chr2L 15446052 15446071 chr2L 15453520 15453540 blood 6 7469 5.5 2.0 3.8 1.2 7488 chr2L 15446052 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453540 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-509 256 chr2L 15500826 15500853 chr2L 15500903 15500930 8 77 1.5 1.0 1.2 3.6 104 chr2L 15500826 intron lace + chr2L 15500878 intron lace + chr2L 15500930 intron lace + chr2L_8_15500001 chr2L_15500001 RAL-509 257 chr2L 15535893 15535917 chr2L 15535983 15536007 8 90 0.0 2.5 1.2 3.6 114 chr2L 15535893 intergenic not near genes chr2L 15535950 intergenic not near genes chr2L 15536007 intergenic not near genes chr2L_8_15535001 chr2L_15535001 RAL-509 258 chr2L 15542448 15542465 chr2L 15542529 15542560 7 89 5.0 1.0 3.0 1.8 112 chr2L 15542448 intergenic not near genes chr2L 15542504 intergenic not near genes chr2L 15542560 intergenic not near genes chr2L_7_15540001 chr2L_15540001 RAL-509 259 chr2L 15543188 15543197 chr2L 15543269 15543278 4 81 5.0 2.0 3.5 0.9 90 chr2L 15543188 intergenic not near genes chr2L 15543233 intergenic not near genes chr2L 15543278 intergenic not near genes chr2L_4_15540001 chr2L_15540001 RAL-509 260 chr2L 15586410 15586441 chr2L 15593462 15593492 297 12 7052 2.5 2.5 2.5 3.4 7082 chr2L 15586410 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_12_15585001 chr2L_15585001 RAL-509 261 chr2L 15887716 15887735 chr2L 15887849 15887866 11 132 7.5 5.0 6.2 1.5 150 chr2L 15887716 intergenic not near genes chr2L 15887791 intergenic not near genes chr2L 15887866 intergenic not near genes chr2L_11_15885001 chr2L_15885001 RAL-509 262 chr2L 15947653 15947672 chr2L 15947805 15947824 5 152 0.5 0.5 0.5 3.3 171 chr2L 15947653 intron beat-Ib - chr2L 15947738 intron beat-Ib - chr2L 15947824 intron beat-Ib - chr2L_5_15945001 chr2L_15945001 RAL-509 263 chr2L 15956030 15956060 chr2L 15957497 15957527 hobo 11 1466 7.5 3.0 5.2 1.8 1497 chr2L 15956030 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957527 intron beat-Ib - chr2L_11_15955001 chr2L_15955001 RAL-509 264 chr2L 16027394 16027423 chr2L 16027469 16027499 5 76 1.5 0.5 1.0 2.5 105 chr2L 16027394 intron beat-Ic + chr2L 16027446 intron beat-Ic + chr2L 16027499 intron beat-Ic + chr2L_5_16025001 chr2L_16025001 RAL-509 265 chr2L 16058133 16058149 chr2L 16058274 16058290 5 141 3.0 2.5 2.8 1.3 157 chr2L 16058133 intron beat-Ia + chr2L 16058212 intron beat-Ia + chr2L 16058290 intron beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-509 266 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 11.5 16.0 13.8 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-509 267 chr2L 16098923 16098953 chr2L 16099010 16099040 12 87 1.0 1.5 1.2 5.5 117 chr2L 16098923 intergenic not near genes chr2L 16098982 intergenic not near genes chr2L 16099040 intergenic not near genes chr2L_12_16095001 chr2L_16095001 RAL-509 268 chr2L 16106553 16106578 chr2L 16106668 16106696 5 117 4.5 2.5 3.5 1.1 143 chr2L 16106553 intergenic not near genes chr2L 16106624 intergenic not near genes chr2L 16106696 intergenic not near genes chr2L_5_16105001 chr2L_16105001 RAL-509 269 chr2L 16141177 16141191 chr2L 16146384 16146398 copia 6 5207 0.0 4.5 2.2 1.9 5221 chr2L 16141177 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-509 270 chr2L 16224801 16224823 chr2L 16224911 16224933 5 107 4.0 1.0 2.5 1.4 132 chr2L 16224801 intergenic not near genes chr2L 16224867 intergenic not near genes chr2L 16224933 intergenic not near genes chr2L_5_16220001 chr2L_16220001 RAL-509 271 chr2L 16243832 16243843 chr2L 16243927 16243938 6 95 4.0 1.0 2.5 1.7 106 chr2L 16243832 exon CG42818 + chr2L 16243885 exon CG42818 + chr2L 16243938 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-509 272 chr2L 16375390 16375399 chr2L 16375481 16375489 5 90 4.0 0.0 2.0 1.7 99 chr2L 16375390 intergenic not near genes chr2L 16375440 intergenic not near genes chr2L 16375489 intergenic not near genes chr2L_5_16375001 chr2L_16375001 RAL-509 273 chr2L 16432595 16432612 chr2L 16432692 16432709 5 97 0.0 1.5 0.8 2.8 114 chr2L 16432595 intron CG5888 - chr2L 16432652 intron CG5888 - chr2L 16432709 intron CG5888 - chr2L_5_16430001 chr2L_16430001 RAL-509 274 chr2L 16443987 16444010 chr2L 16444064 16444087 7 75 4.5 0.0 2.2 2.2 100 chr2L 16443987 intron CG5888 - chr2L 16444037 intron CG5888 - chr2L 16444087 intron CG5888 - chr2L_7_16440001 chr2L_16440001 RAL-509 275 chr2L 16505000 16505009 chr2L 16505110 16505118 4 110 0.0 5.0 2.5 1.1 118 chr2L 16505000 intron Tpr2 + chr2L 16505059 intron Tpr2 + chr2L 16505118 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-509 276 chr2L 16600232 16600260 chr2L 16600352 16600382 9 119 2.0 4.0 3.0 2.2 150 chr2L 16600232 intron CG42389 + chr2L 16600307 intron CG42389 + chr2L 16600382 intron CG42389 + chr2L_9_16600001 chr2L_16600001 RAL-509 277 chr2L 16694133 16694151 chr2L 16694214 16694237 6 83 5.5 3.0 4.2 1.2 104 chr2L 16694133 intron grp + chr2L 16694185 intron grp + chr2L 16694237 intron grp + chr2L_6_16690001 chr2L_16690001 RAL-509 278 chr2L 16694152 16694163 chr2L 16694212 16694249 5 70 4.5 2.5 3.5 1.1 97 chr2L 16694152 intron grp + chr2L 16694200 intron grp + chr2L 16694249 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-509 279 chr2L 16695262 16695292 chr2L 16695345 16695376 4 80 1.0 0.5 0.8 2.2 114 chr2L 16695262 intron grp + chr2L 16695319 intron grp + chr2L 16695376 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-509 280 chr2L 16715515 16715542 chr2L 16715595 16715622 5 77 3.0 1.0 2.0 1.7 107 chr2L 16715515 intron CG31808 - chr2L 16715568 intron CG31808 - chr2L 16715622 intron CG31808 - chr2L_5_16715001 chr2L_16715001 RAL-509 281 chr2L 16940002 16940010 chr2L 16940079 16940088 4 78 1.5 5.5 3.5 0.9 86 chr2L 16940002 intergenic not near genes chr2L 16940045 intergenic not near genes chr2L 16940088 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-509 282 chr2L 16984460 16984484 chr2L 16984539 16984564 10 80 4.0 4.5 4.2 1.9 104 chr2L 16984460 intron beat-IIIb + chr2L 16984512 intron beat-IIIb + chr2L 16984564 intron beat-IIIb + chr2L_10_16980001 chr2L_16980001 RAL-509 283 chr2L 17114215 17114243 chr2L 17114306 17114334 9 91 0.5 1.5 1.0 4.5 119 chr2L 17114215 intergenic not near genes chr2L 17114274 intergenic not near genes chr2L 17114334 intergenic not near genes chr2L_9_17110001 chr2L_17110001 RAL-509 284 chr2L 17158726 17158744 chr2L 17158827 17158838 4 100 5.0 1.5 3.2 1.0 112 chr2L 17158726 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158782 intron,intron CG34106 +,beat-IIIa + chr2L 17158838 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-509 285 chr2L 17167565 17167595 chr2L 17167806 17167836 pogo 8 240 2.0 2.0 2.0 2.7 271 chr2L 17167565 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167836 intron,intron CG34106 +,beat-IIIa + chr2L_8_17165001 chr2L_17165001 RAL-509 286 chr2L 17199163 17199186 chr2L 17200630 17200650 hobo 4 1466 4.0 3.0 3.5 0.9 1487 chr2L 17199163 intron beat-IIIc - chr2L 17199906 intron beat-IIIc - chr2L 17200650 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-509 287 chr2L 17226098 17226127 chr2L 17226177 17226206 9 78 1.5 2.5 2.0 3.0 108 chr2L 17226098 intron beat-IIIc - chr2L 17226152 intron beat-IIIc - chr2L 17226206 intron beat-IIIc - chr2L_9_17225001 chr2L_17225001 RAL-509 288 chr2L 17260885 17260910 chr2L 17260967 17260990 5 82 2.0 2.5 2.2 1.6 105 chr2L 17260885 intergenic beat-IIIc - chr2L 17260938 intergenic beat-IIIc - chr2L 17260990 intergenic beat-IIIc - chr2L_5_17260001 chr2L_17260001 RAL-509 289 chr2L 17273195 17273223 chr2L 17277972 17278006 F-element 11 4782 3.0 3.5 3.2 2.6 4811 chr2L 17273195 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-509 290 chr2L 17289244 17289261 chr2L 17289323 17289340 5 79 3.0 0.5 1.8 1.8 96 chr2L 17289244 intergenic not near genes chr2L 17289292 intergenic not near genes chr2L 17289340 intergenic not near genes chr2L_5_17285001 chr2L_17285001 RAL-509 291 chr2L 17304982 17305014 chr2L 17305158 17305192 14 177 1.0 1.5 1.2 6.4 210 chr2L 17304982 intergenic not near genes chr2L 17305087 intergenic not near genes chr2L 17305192 intergenic not near genes chr2L_14_17305001 chr2L_17305001 RAL-509 292 chr2L 17310376 17310402 chr2L 17310470 17310493 7 94 0.0 0.0 0.0 7.0 117 chr2L 17310376 intergenic not near genes chr2L 17310434 intergenic not near genes chr2L 17310493 intergenic not near genes chr2L_7_17310001 chr2L_17310001 RAL-509 293 chr2L 17339133 17339152 chr2L 17339210 17339227 5 77 2.0 4.0 3.0 1.2 94 chr2L 17339133 intergenic not near genes chr2L 17339180 intergenic not near genes chr2L 17339227 intergenic not near genes chr2L_5_17335001 chr2L_17335001 RAL-509 294 chr2L 17432632 17432668 chr2L 17432709 17432744 16 76 2.5 2.5 2.5 4.6 112 chr2L 17432632 intron Dif - chr2L 17432688 intron Dif - chr2L 17432744 intron Dif - chr2L_16_17430001 chr2L_17430001 RAL-509 295 chr2L 17466423 17466457 chr2L 17466516 17466549 7 93 0.0 1.0 0.5 4.7 126 chr2L 17466423 intron BicD - chr2L 17466486 intron BicD - chr2L 17466549 intron BicD - chr2L_7_17465001 chr2L_17465001 RAL-509 296 chr2L 17565386 17565411 chr2L 17565477 17565502 8 91 0.0 0.5 0.2 6.7 116 chr2L 17565386 intergenic not near genes chr2L 17565444 intergenic not near genes chr2L 17565502 intergenic not near genes chr2L_8_17565001 chr2L_17565001 RAL-509 297 chr2L 17584094 17584116 chr2L 17584882 17584904 12 788 15.0 4.5 9.8 1.1 810 chr2L 17584094 5` UTR CR45111 + chr2L 17584499 intergenic CR45111 +,CR45112 - chr2L 17584904 3` UTR CR45112 - chr2L_12_17580001 chr2L_17580001 RAL-509 298 chr2L 17583883 17583897 chr2L 17584824 17584837 4 944 21.5 12.0 16.8 0.2 954 chr2L 17583883 intergenic CR45111 + chr2L 17584360 5` UTR CR45111 + chr2L 17584837 3` UTR CR45112 - chr2L_4_17580001 chr2L_17580001 RAL-509 299 chr2L 17651157 17651173 chr2L 17651249 17651272 11 98 1.5 2.5 2.0 3.7 115 chr2L 17651157 intron CadN - chr2L 17651214 intron CadN - chr2L 17651272 intron CadN - chr2L_11_17650001 chr2L_17650001 RAL-509 300 chr2L 17666381 17666404 chr2L 17666462 17666485 4 81 0.5 5.0 2.8 1.1 104 chr2L 17666381 intron CadN - chr2L 17666433 intron CadN - chr2L 17666485 intron CadN - chr2L_4_17665001 chr2L_17665001 RAL-509 301 chr2L 17703188 17703208 chr2L 17703257 17703286 9 75 1.0 4.0 2.5 2.6 98 chr2L 17703188 intron CadN - chr2L 17703237 intron CadN - chr2L 17703286 intron CadN - chr2L_9_17700001 chr2L_17700001 RAL-509 302 chr2L 17819921 17819945 chr2L 17825123 17825147 copia 7 5202 1.5 1.5 1.5 2.8 5226 chr2L 17819921 intron CadN2 - chr2L 17822534 intron CadN2 - chr2L 17825147 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-509 303 chr2L 17880593 17880603 chr2L 17880705 17880715 4 112 7.0 1.5 4.2 0.8 122 chr2L 17880593 intergenic not near genes chr2L 17880654 intergenic not near genes chr2L 17880715 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-509 304 chr2L 17901323 17901348 chr2L 17901520 17901544 5 197 2.0 1.5 1.8 1.8 221 chr2L 17901323 intergenic CR45332 - chr2L 17901434 intergenic CR45332 - chr2L 17901544 intergenic CR45332 - chr2L_5_17900001 chr2L_17900001 RAL-509 305 chr2L 17904023 17904045 chr2L 17904191 17904200 8 166 1.5 4.0 2.8 2.1 177 chr2L 17904023 intergenic not near genes chr2L 17904112 intergenic not near genes chr2L 17904200 intergenic not near genes chr2L_8_17900001 chr2L_17900001 RAL-509 306 chr2L 17911964 17911981 chr2L 17914138 17914155 pogo 4 2171 7.0 2.0 4.5 0.7 2191 chr2L 17911964 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914155 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-509 307 chr2L 17938041 17938057 chr2L 17938237 17938253 5 196 2.5 1.5 2.0 1.7 212 chr2L 17938041 intergenic not near genes chr2L 17938147 intergenic not near genes chr2L 17938253 intergenic not near genes chr2L_5_17935001 chr2L_17935001 RAL-509 308 chr2L 17940717 17940747 chr2L 17940802 17940832 9 85 1.5 3.5 2.5 2.6 115 chr2L 17940717 intergenic not near genes chr2L 17940774 intergenic not near genes chr2L 17940832 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-509 309 chr2L 17945333 17945347 chr2L 17945418 17945432 4 84 1.5 1.5 1.5 1.6 99 chr2L 17945333 intergenic not near genes chr2L 17945382 intergenic not near genes chr2L 17945432 intergenic not near genes chr2L_4_17945001 chr2L_17945001 RAL-509 310 chr2L 17951943 17951967 chr2L 17953410 17953434 hobo 9 1466 1.5 2.5 2.0 3.0 1491 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952688 intergenic not near genes chr2L 17953434 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-509 311 chr2L 18051875 18051907 chr2L 18061022 18061053 roo 6 9147 2.5 2.5 2.5 1.7 9178 chr2L 18051875 intron rdo + chr2L 18056464 intron rdo + chr2L 18061053 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-509 312 chr2L 18111241 18111259 chr2L 18111332 18111350 12 90 5.0 3.5 4.2 2.3 109 chr2L 18111241 intergenic not near genes chr2L 18111296 intergenic not near genes chr2L 18111350 intergenic not near genes chr2L_12_18110001 chr2L_18110001 RAL-509 313 chr2L 18148833 18148852 chr2L 18148926 18148947 7 95 5.0 4.5 4.8 1.2 114 chr2L 18148833 intron Socs36E - chr2L 18148890 intron Socs36E - chr2L 18148947 intron Socs36E - chr2L_7_18145001 chr2L_18145001 RAL-509 314 chr2L 18254813 18254829 chr2L 18254913 18254929 4 100 0.5 2.0 1.2 1.8 116 chr2L 18254813 intron CG42750 - chr2L 18254871 intron CG42750 - chr2L 18254929 intron CG42750 - chr2L_4_18250001 chr2L_18250001 RAL-509 315 chr2L 18264063 18264092 chr2L 18264140 18264169 8 77 2.0 1.0 1.5 3.2 106 chr2L 18264063 intron CG42750 - chr2L 18264116 intron CG42750 - chr2L 18264169 intron CG42750 - chr2L_8_18260001 chr2L_18260001 RAL-509 316 chr2L 18274041 18274074 chr2L 18274127 18274160 12 85 2.5 1.0 1.8 4.3 119 chr2L 18274041 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274160 intron CG42750 - chr2L_12_18270001 chr2L_18270001 RAL-509 317 chr2L 18306767 18306796 chr2L 18307124 18307152 14 357 0.5 2.5 1.5 5.6 385 chr2L 18306767 intergenic not near genes chr2L 18306960 intergenic not near genes chr2L 18307152 intergenic not near genes chr2L_14_18305001 chr2L_18305001 RAL-509 318 chr2L 18315252 18315281 chr2L 18315332 18315360 11 80 1.0 2.0 1.5 4.4 108 chr2L 18315252 intergenic not near genes chr2L 18315306 intergenic not near genes chr2L 18315360 intergenic not near genes chr2L_11_18315001 chr2L_18315001 RAL-509 319 chr2L 18364264 18364281 chr2L 18364364 18364381 7 100 4.0 3.5 3.8 1.5 117 chr2L 18364264 intron Fas3 + chr2L 18364322 intron Fas3 + chr2L 18364381 intron Fas3 + chr2L_7_18360001 chr2L_18360001 RAL-509 320 chr2L 18394403 18394430 chr2L 18394486 18394511 12 83 2.5 2.0 2.2 3.8 108 chr2L 18394403 intergenic not near genes chr2L 18394457 intergenic not near genes chr2L 18394511 intergenic not near genes chr2L_12_18390001 chr2L_18390001 RAL-509 321 chr2L 18408023 18408053 chr2L 18412807 18412837 Doc 14 4784 2.0 0.0 1.0 7.0 4814 chr2L 18408023 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412837 intergenic not near genes chr2L_14_18410001 chr2L_18410001 RAL-509 322 chr2L 18462834 18462855 chr2L 18462910 18462930 8 74 1.5 2.0 1.8 2.9 96 chr2L 18462834 intron let-7-C + chr2L 18462882 intron let-7-C + chr2L 18462930 intron let-7-C + chr2L_8_18460001 chr2L_18460001 RAL-509 323 chr2L 18543778 18543812 chr2L 18543992 18544026 13 211 2.0 1.5 1.8 4.6 248 chr2L 18543778 intron Pde11 - chr2L 18543902 intron Pde11 - chr2L 18544026 intron Pde11 - chr2L_13_18540001 chr2L_18540001 RAL-509 324 chr2L 18561557 18561580 chr2L 18561649 18561672 5 92 6.0 1.5 3.8 1.0 115 chr2L 18561557 intron Pde11 - chr2L 18561614 intron Pde11 - chr2L 18561672 intron Pde11 - chr2L_5_18560001 chr2L_18560001 RAL-509 325 chr2L 18568319 18568332 chr2L 18568399 18568412 5 80 0.5 4.0 2.2 1.6 93 chr2L 18568319 intron Pde11 - chr2L 18568366 intron Pde11 - chr2L 18568412 intron Pde11 - chr2L_5_18565001 chr2L_18565001 RAL-509 326 chr2L 18578730 18578769 chr2L 18578820 18578857 9 89 3.0 1.5 2.2 2.8 127 chr2L 18578730 intron Pde11 - chr2L 18578794 intron Pde11 - chr2L 18578857 intron Pde11 - chr2L_9_18575001 chr2L_18575001 RAL-509 327 chr2L 18584756 18584777 chr2L 18584840 18584856 7 84 3.0 3.5 3.2 1.7 100 chr2L 18584756 intron Pde11 - chr2L 18584806 intron Pde11 - chr2L 18584856 intron Pde11 - chr2L_7_18580001 chr2L_18580001 RAL-509 328 chr2L 18621049 18621077 chr2L 18621137 18621166 5 89 4.5 3.0 3.8 1.0 117 chr2L 18621049 intron MESR3 + chr2L 18621108 intron MESR3 + chr2L 18621166 intron MESR3 + chr2L_5_18620001 chr2L_18620001 RAL-509 329 chr2L 18659940 18659960 chr2L 18660024 18660044 10 83 0.5 2.5 1.5 4.0 104 chr2L 18659940 intron MESR3 + chr2L 18659992 intron MESR3 + chr2L 18660044 intron MESR3 + chr2L_10_18655001 chr2L_18655001 RAL-509 330 chr2L 18812557 18812588 chr2L 18812820 18812851 5 263 3.5 1.0 2.2 1.6 294 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812851 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-509 331 chr2L 18884289 18884316 chr2L 18884375 18884402 8 86 1.5 2.0 1.8 2.9 113 chr2L 18884289 intergenic not near genes chr2L 18884346 intergenic not near genes chr2L 18884402 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-509 332 chr2L 18926583 18926593 chr2L 18926690 18926699 5 107 0.5 3.0 1.8 1.8 116 chr2L 18926583 intron ssp3 - chr2L 18926641 intron ssp3 - chr2L 18926699 intron ssp3 - chr2L_5_18925001 chr2L_18925001 RAL-509 333 chr2L 19024096 19024097 chr2L 21768291 21768293 9 2744195 5.0 23.0 14.0 0.6 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_9_20395001 chr2L_20395001 RAL-509 334 chr2L 19121039 19121069 chr2L 19121117 19121122 6 74 3.5 2.0 2.8 1.6 83 chr2L 19121039 intergenic l(2)37Cc - chr2L 19121080 intergenic l(2)37Cc - chr2L 19121122 intergenic l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-509 335 chr2L 19147268 19147284 chr2L 19147383 19147399 6 115 6.0 0.0 3.0 1.5 131 chr2L 19147268 intron brat + chr2L 19147334 intron brat + chr2L 19147399 intron brat + chr2L_6_19145001 chr2L_19145001 RAL-509 336 chr2L 19147383 19147402 chr2L 19154418 19154437 297 4 7035 0.0 6.0 3.0 1.0 7054 chr2L 19147383 intron brat + chr2L 19150910 intron brat + chr2L 19154437 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-509 337 chr2L 19331662 19331695 chr2L 19331741 19331774 4 79 3.5 2.5 3.0 1.0 112 chr2L 19331662 intergenic not near genes chr2L 19331718 intergenic not near genes chr2L 19331774 intergenic not near genes chr2L_4_19330001 chr2L_19330001 RAL-509 338 chr2L 19345015 19345047 chr2L 19357223 19357256 blood 8 12208 4.0 2.0 3.0 2.0 12241 chr2L 19345015 intron dnt - chr2L 19351136 intron dnt - chr2L 19357256 intron dnt - chr2L_8_19350001 chr2L_19350001 RAL-509 339 chr2L 19357547 19357569 chr2L 19357637 19357659 11 89 4.0 3.5 3.8 2.3 112 chr2L 19357547 intron dnt - chr2L 19357603 intron dnt - chr2L 19357659 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-509 340 chr2L 19375473 19375491 chr2L 19375554 19375572 5 81 4.0 3.0 3.5 1.1 99 chr2L 19375473 intergenic not near genes chr2L 19375522 intergenic not near genes chr2L 19375572 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-509 341 chr2L 19405618 19405641 chr2L 19405708 19405731 5 90 0.5 1.5 1.0 2.5 113 chr2L 19405618 intron Pax - chr2L 19405674 intron Pax - chr2L 19405731 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-509 342 chr2L 19544604 19544630 chr2L 19544667 19544672 8 58 2.5 3.5 3.0 2.0 68 chr2L 19544604 exon ref(2)P + chr2L 19544638 exon ref(2)P + chr2L 19544672 exon ref(2)P + chr2L_8_19540001 chr2L_19540001 RAL-509 343 chr2L 19558521 19558549 chr2L 19558625 19558638 6 100 3.0 1.0 2.0 2.0 117 chr2L 19558521 intron Tep5 + chr2L 19558580 intron Tep5 + chr2L 19558638 intron Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-509 344 chr2L 19559406 19559413 chr2L 19559482 19559489 4 76 0.0 0.0 0.0 4.0 83 chr2L 19559406 exon Tep5 + chr2L 19559448 exon Tep5 + chr2L 19559489 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-509 345 chr2L 19560004 19560027 chr2L 19560257 19560279 4 252 6.0 2.0 4.0 0.8 275 chr2L 19560004 exon Tep5 + chr2L 19560142 exon Tep5 + chr2L 19560279 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-509 346 chr2L 19560834 19560863 chr2L 19560914 19560942 6 80 5.5 0.0 2.8 1.6 108 chr2L 19560834 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-509 347 chr2L 19561346 19561365 chr2L 19561487 19561506 9 141 2.5 4.5 3.5 2.0 160 chr2L 19561346 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561506 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-509 348 chr2L 19620098 19620126 chr2L 19621082 19621115 jockey 6 988 4.0 6.0 5.0 1.0 1017 chr2L 19620098 intron Lar + chr2L 19620606 intron Lar + chr2L 19621115 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-509 349 chr2L 19631667 19631696 chr2L 19632406 19632435 8 738 2.5 1.5 2.0 2.7 768 chr2L 19631667 intron Lar + chr2L 19632051 intron Lar + chr2L 19632435 intron Lar + chr2L_8_19630001 chr2L_19630001 RAL-509 350 chr2L 19652573 19652604 chr2L 19674007 19674038 opus 8 21433 2.5 2.5 2.5 2.3 21465 chr2L 19652573 intron Lar + chr2L 19663306 intron Lar + chr2L 19674038 intron Lar + chr2L_8_19660001 chr2L_19660001 RAL-509 351 chr2L 19703535 19703565 chr2L 19712671 19712701 roo 6 9136 6.5 3.0 4.8 1.0 9166 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712701 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-509 352 chr2L 19737357 19737388 chr2L 19740825 19740857 1360 14 3468 2.0 3.0 2.5 4.0 3500 chr2L 19737357 intergenic Nf-YB + chr2L 19739107 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_14_19735001 chr2L_19735001 RAL-509 353 chr2L 19776276 19776285 chr2L 19776374 19776382 5 98 0.5 1.5 1.0 2.5 106 chr2L 19776276 3` UTR CdGAPr - chr2L 19776329 3` UTR CdGAPr - chr2L 19776382 3` UTR CdGAPr - chr2L_5_19775001 chr2L_19775001 RAL-509 354 chr2L 19846245 19846277 chr2L 19846326 19846358 6 80 1.0 4.5 2.8 1.6 113 chr2L 19846245 intron sick + chr2L 19846302 intron sick + chr2L 19846358 intron sick + chr2L_6_19845001 chr2L_19845001 RAL-509 355 chr2L 19901490 19901513 chr2L 19901593 19901616 9 103 3.0 2.5 2.8 2.4 126 chr2L 19901490 intron sick + chr2L 19901553 intron sick + chr2L 19901616 intron sick + chr2L_9_19900001 chr2L_19900001 RAL-509 356 chr2L 19911290 19911325 chr2L 19911378 19911405 10 87 3.0 1.0 2.0 3.3 115 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911348 intron,3` UTR sick +,CR43097 - chr2L 19911405 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-509 357 chr2L 19969087 19969108 chr2L 19969166 19969185 5 79 2.0 0.5 1.2 2.3 98 chr2L 19969087 3` UTR CG43861 - chr2L 19969136 3` UTR CG43861 - chr2L 19969185 3` UTR CG43861 - chr2L_5_19965001 chr2L_19965001 RAL-509 358 chr2L 20005875 20005895 chr2L 20010948 20010971 flea 7 5075 2.0 3.0 2.5 2.0 5096 chr2L 20005875 intron CG43861 - chr2L 20008423 intron CG43861 - chr2L 20010971 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-509 359 chr2L 20269608 20269623 chr2L 20269832 20269847 4 224 5.0 2.0 3.5 0.9 239 chr2L 20269608 intergenic not near genes chr2L 20269728 intergenic not near genes chr2L 20269847 intergenic not near genes chr2L_4_20265001 chr2L_20265001 RAL-509 360 chr2L 20272122 20272142 chr2L 20282833 20282853 copia 7 10711 2.5 5.0 3.8 1.5 10731 chr2L 20272122 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-509 361 chr2L 20296517 20296541 chr2L 20296598 20296622 5 81 1.5 5.5 3.5 1.1 105 chr2L 20296517 intergenic CR43414 - chr2L 20296570 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-509 362 chr2L 20298828 20298853 chr2L 20298911 20298929 13 82 1.5 4.0 2.8 3.4 101 chr2L 20298828 intergenic not near genes chr2L 20298878 intergenic not near genes chr2L 20298929 intergenic not near genes chr2L_13_20295001 chr2L_20295001 RAL-509 363 chr2L 20303173 20303188 chr2L 20310640 20310656 blood 5 7467 1.5 2.5 2.0 1.7 7483 chr2L 20303173 intergenic not near genes chr2L 20306914 intergenic not near genes chr2L 20310656 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-509 364 chr2L 20310880 20310920 chr2L 20310960 20310999 8 80 0.5 3.0 1.8 2.9 119 chr2L 20310880 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310999 intergenic spir + chr2L_8_20310001 chr2L_20310001 RAL-509 365 chr2L 20372228 20372246 chr2L 20372469 20372487 pogo 4 241 1.5 5.0 3.2 1.0 259 chr2L 20372228 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372487 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-509 366 chr2L 20383445 20383470 chr2L 20383532 20383562 13 90 4.0 3.0 3.5 2.9 117 chr2L 20383445 intergenic not near genes chr2L 20383504 intergenic not near genes chr2L 20383562 intergenic not near genes chr2L_13_20380001 chr2L_20380001 RAL-509 367 chr2L 20498688 20498706 chr2L 20498787 20498805 8 99 4.5 7.5 6.0 1.1 117 chr2L 20498688 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-509 368 chr2L 20549133 20549150 chr2L 20549215 20549232 11 81 1.5 4.0 2.8 2.9 99 chr2L 20549133 intergenic not near genes chr2L 20549182 intergenic not near genes chr2L 20549232 intergenic not near genes chr2L_11_20545001 chr2L_20545001 RAL-509 369 chr2L 20553201 20553221 chr2L 20553277 20553297 7 76 0.5 4.0 2.2 2.2 96 chr2L 20553201 intergenic not near genes chr2L 20553249 intergenic not near genes chr2L 20553297 intergenic not near genes chr2L_7_20550001 chr2L_20550001 RAL-509 370 chr2L 20568662 20568684 chr2L 20569052 20569074 X-element 7 390 3.0 2.0 2.5 2.0 412 chr2L 20568662 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569074 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-509 371 chr2L 20576218 20576240 chr2L 20583687 20583709 blood 8 7468 4.0 4.5 4.2 1.5 7491 chr2L 20576218 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-509 372 chr2L 20602719 20602745 chr2L 20602807 20602833 9 88 1.5 2.5 2.0 3.0 114 chr2L 20602719 intron CR44909 - chr2L 20602776 intron CR44909 - chr2L 20602833 intron CR44909 - chr2L_9_20600001 chr2L_20600001 RAL-509 373 chr2L 20607644 20607672 chr2L 20607722 20607725 5 70 2.0 1.0 1.5 2.0 81 chr2L 20607644 intron,3` UTR CR44909 -,CR43608 - chr2L 20607684 intron,3` UTR CR44909 -,CR43608 - chr2L 20607725 intron,3` UTR CR44909 -,CR43608 - chr2L_5_20605001 chr2L_20605001 RAL-509 374 chr2L 20668689 20668721 chr2L 20668765 20668797 7 76 3.0 1.5 2.2 2.2 108 chr2L 20668689 intron CG31678 - chr2L 20668743 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_7_20665001 chr2L_20665001 RAL-509 375 chr2L 20687089 20687111 chr2L 20687168 20687190 5 79 1.5 3.0 2.2 1.6 101 chr2L 20687089 intron Hr38 - chr2L 20687140 intron Hr38 - chr2L 20687190 intron Hr38 - chr2L_5_20685001 chr2L_20685001 RAL-509 376 chr2L 20692245 20692279 chr2L 20692333 20692367 6 88 3.5 4.0 3.8 1.2 122 chr2L 20692245 intron Hr38 - chr2L 20692306 intron Hr38 - chr2L 20692367 intron Hr38 - chr2L_6_20690001 chr2L_20690001 RAL-509 377 chr2L 20819119 20819145 chr2L 20819203 20819229 4 84 2.0 2.0 2.0 1.3 110 chr2L 20819119 intergenic not near genes chr2L 20819174 intergenic not near genes chr2L 20819229 intergenic not near genes chr2L_4_20815001 chr2L_20815001 RAL-509 378 chr2L 20821488 20821521 chr2L 20821648 20821681 8 160 1.0 2.0 1.5 3.2 193 chr2L 20821488 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821681 intergenic not near genes chr2L_8_20820001 chr2L_20820001 RAL-509 379 chr2L 20829582 20829606 chr2L 20829665 20829690 7 81 1.5 1.5 1.5 2.8 108 chr2L 20829582 intergenic CG31673 + chr2L 20829636 5` UTR CG31673 + chr2L 20829690 exon CG31673 + chr2L_7_20825001 chr2L_20825001 RAL-509 380 chr2L 20835814 20835840 chr2L 20836530 20836557 Quasimodo 9 717 2.5 1.0 1.8 3.2 743 chr2L 20835814 5` UTR Oseg5 - chr2L 20836186 intergenic Oseg5 -,Spn38F - chr2L 20836557 intergenic Spn38F - chr2L_9_20835001 chr2L_20835001 RAL-509 381 chr2L 20846764 20846790 chr2L 20846848 20846873 6 84 7.5 5.0 6.2 0.8 109 chr2L 20846764 intron CG31676 + chr2L 20846818 intron CG31676 + chr2L 20846873 intron CG31676 + chr2L_6_20845001 chr2L_20845001 RAL-509 382 chr2L 20852308 20852427 chr2L 20852371 20852497 5 66 4.0 6.0 5.0 0.8 189 chr2L 20852308 intergenic twit + chr2L 20852402 intergenic twit + chr2L 20852497 intergenic twit + chr2L_5_20850001 chr2L_20850001 RAL-509 383 chr2L 20946951 20946962 chr2L 20947038 20947048 4 87 3.5 5.0 4.2 0.8 97 chr2L 20946951 intergenic CR44606 - chr2L 20947000 intergenic CR44606 - chr2L 20947048 intergenic CR44606 - chr2L_4_20945001 chr2L_20945001 RAL-509 384 chr2L 20976641 20976671 chr2L 20981456 20981486 X-element 6 4814 3.5 1.5 2.5 1.7 4845 chr2L 20976641 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981486 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-509 385 chr2L 20991037 20991069 chr2L 20991115 20991147 9 78 5.0 4.0 4.5 1.6 110 chr2L 20991037 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991147 intron CG42238 - chr2L_9_20990001 chr2L_20990001 RAL-509 386 chr2L 21002982 21003011 chr2L 21003739 21003768 7 757 1.5 1.5 1.5 2.8 786 chr2L 21002982 intron CG42238 - chr2L 21003375 intron CG42238 - chr2L 21003768 intron CG42238 - chr2L_7_21000001 chr2L_21000001 RAL-509 387 chr2L 21020272 21020310 chr2L 21023948 21023987 NOF 8 3677 4.0 4.5 4.2 1.5 3715 chr2L 21020272 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-509 388 chr2L 21041135 21041167 chr2L 21049396 21049427 Tirant 7 8261 2.0 2.5 2.2 2.2 8292 chr2L 21041135 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-509 389 chr2L 21074920 21074945 chr2L 21075011 21075036 4 91 2.0 1.5 1.8 1.4 116 chr2L 21074920 intergenic tadr + chr2L 21074978 intergenic tadr + chr2L 21075036 intergenic tadr + chr2L_4_21070001 chr2L_21070001 RAL-509 390 chr2L 21086425 21086455 chr2L 21086538 21086553 14 112 1.5 2.5 2.0 4.7 128 chr2L 21086425 5` UTR CG33509 - chr2L 21086489 5` UTR CG33509 - chr2L 21086553 intergenic CG33509 -,ppk13 - chr2L_14_21085001 chr2L_21085001 RAL-509 391 chr2L 21088928 21088937 chr2L 21089010 21089019 4 82 5.0 4.0 4.5 0.7 91 chr2L 21088928 intergenic ppk13 -,CG9259 + chr2L 21088974 intergenic ppk13 -,CG9259 + chr2L 21089019 intergenic ppk13 -,CG9259 + chr2L_4_21085001 chr2L_21085001 RAL-509 392 chr2L 21158873 21158914 chr2L 21158950 21158989 14 76 3.0 2.5 2.8 3.7 116 chr2L 21158873 intergenic CG9248 +,CG9249 - chr2L 21158931 5` UTR CG9248 + chr2L 21158989 5` UTR CG9248 + chr2L_14_21155001 chr2L_21155001 RAL-509 393 chr2L 21245276 21245302 chr2L 21245515 21245532 9 238 1.5 2.5 2.0 3.0 256 chr2L 21245276 intron Hr39 + chr2L 21245404 intron Hr39 + chr2L 21245532 intron Hr39 + chr2L_9_21245001 chr2L_21245001 RAL-509 394 chr2L 21286606 21286633 chr2L 21286684 21286711 5 78 2.0 1.5 1.8 1.8 105 chr2L 21286606 exon Mio - chr2L 21286658 intron Mio - chr2L 21286711 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-509 395 chr2L 21355605 21355635 chr2L 21355750 21355778 7 145 1.0 2.0 1.5 2.8 173 chr2L 21355605 intron Tsp39D + chr2L 21355692 intron Tsp39D + chr2L 21355778 intron Tsp39D + chr2L_7_21355001 chr2L_21355001 RAL-509 396 chr2L 21392216 21392239 chr2L 21392302 21392325 4 86 0.0 1.0 0.5 2.7 109 chr2L 21392216 3` UTR nrv3 + chr2L 21392270 3` UTR nrv3 + chr2L 21392325 3` UTR nrv3 + chr2L_4_21390001 chr2L_21390001 RAL-509 397 chr2L 21771992 21772004 chr2L 21772070 21772076 7 77 3.5 2.5 3.0 1.8 84 chr2L 21771992 intron CG31612 - chr2L 21772034 intron CG31612 - chr2L 21772076 intron CG31612 - chr2L_7_21770001 chr2L_21770001 RAL-509 398 chr2L 21819343 21819358 chr2L 21819428 21819439 4 86 1.5 3.5 2.5 1.1 96 chr2L 21819343 intergenic CR44786 + chr2L 21819391 intergenic CR44786 + chr2L 21819439 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-509 399 chr2L 21824138 21824156 chr2L 21824225 21824243 6 87 1.5 5.5 3.5 1.3 105 chr2L 21824138 intergenic not near genes chr2L 21824190 intergenic not near genes chr2L 21824243 intergenic not near genes chr2L_6_21820001 chr2L_21820001 RAL-509 400 chr2L 21981683 21981711 chr2L 21990848 21990876 roo 8 9165 3.5 3.5 3.5 1.8 9193 chr2L 21981683 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-509 401 chr2L 21996952 21996967 chr2L 21997029 21997048 6 80 3.0 2.0 2.5 1.7 96 chr2L 21996952 intergenic not near genes chr2L 21997000 intergenic not near genes chr2L 21997048 intergenic not near genes chr2L_6_21995001 chr2L_21995001 RAL-509 402 chr2L 22239440 22239448 chr2L 22239514 22239529 4 79 4.5 4.0 4.2 0.8 89 chr2L 22239440 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239529 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-509 403 chr2L 22258628 22258647 chr2L 22260752 22260766 G6 5 2123 3.0 2.5 2.8 1.3 2138 chr2L 22258628 intergenic Tif-IA + chr2L 22259697 intergenic not near genes chr2L 22260766 intergenic not near genes chr2L_5_22255001 chr2L_22255001 RAL-509 404 chr2L 22294366 22294387 chr2L 22294454 22294475 4 88 1.0 0.5 0.8 2.2 109 chr2L 22294366 intergenic not near genes chr2L 22294420 intergenic not near genes chr2L 22294475 intergenic not near genes chr2L_4_22290001 chr2L_22290001 RAL-509 405 chr2L 22490460 22490528 chr2L 22497636 22497640 springer 6 7138 8.5 0.0 4.2 1.2 7180 chr2L 22490460 intergenic not near genes chr2L 22494050 intergenic not near genes chr2L 22497640 intergenic not near genes chr2L_6_22490001 chr2L_22490001 RAL-509 406 chr2L 22758151 22758167 chr2L 22758296 22758312 4 145 3.5 1.0 2.2 1.2 161 chr2L 22758151 intergenic not near genes chr2L 22758232 intergenic not near genes chr2L 22758312 intergenic not near genes chr2L_4_22755001 chr2L_22755001 RAL-509 407 chr2L 22983946 22983967 chr2L 22984020 22984043 4 76 3.5 1.5 2.5 1.1 97 chr2L 22983946 intron cta + chr2L 22983994 intron cta + chr2L 22984043 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-509 408 chr2R 469970 469983 chr2R 473210 473224 F-element 6 3240 3.0 2.0 2.5 1.7 3254 chr2R 469970 intergenic not near genes chr2R 471597 intergenic not near genes chr2R 473224 intergenic not near genes chr2R_6_470001 chr2R_470001 RAL-509 409 chr2R 529325 529357 chr2R 537950 537981 Max-element 5 8625 1.0 2.5 1.8 1.8 8656 chr2R 529325 intron CG40378 + chr2R 533653 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-509 410 chr2R 1082365 1082385 chr2R 1087134 1087161 Doc 7 4771 4.0 4.5 4.2 1.3 4796 chr2R 1082365 intron rl + chr2R 1084763 intron rl + chr2R 1087161 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-509 411 chr2R 1365869 1365890 chr2R 1365981 1366001 6 112 4.0 5.5 4.8 1.0 132 chr2R 1365869 intron l(2)41Ab + chr2R 1365935 intron l(2)41Ab + chr2R 1366001 intron l(2)41Ab + chr2R_6_1365001 chr2R_1365001 RAL-509 412 chr2R 2015135 2015164 chr2R 2015212 2015228 4 73 0.5 0.5 0.5 2.7 93 chr2R 2015135 intron CG17684 - chr2R 2015182 intron CG17684 - chr2R 2015228 intron CG17684 - chr2R_4_2015001 chr2R_2015001 RAL-509 413 chr2R 2498988 2499011 chr2R 2508135 2508158 roo 5 9143 5.0 2.0 3.5 1.1 9170 chr2R 2498988 intron MFS17 - chr2R 2503573 intron MFS17 - chr2R 2508158 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-509 414 chr2R 2508314 2508339 chr2R 2508452 2508477 4 138 2.5 5.5 4.0 0.8 163 chr2R 2508314 intron MFS17 - chr2R 2508396 intron MFS17 - chr2R 2508477 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-509 415 chr2R 3097640 3097665 chr2R 3097717 3097742 8 77 3.5 1.0 2.2 2.5 102 chr2R 3097640 intron CG42596 + chr2R 3097691 intron CG42596 + chr2R 3097742 intron CG42596 + chr2R_8_3095001 chr2R_3095001 RAL-509 416 chr2R 3291952 3292101 chr2R 3915120 3915262 6 623163 10.0 15.5 12.8 0.4 623310 chr2R 3291952 intergenic not near genes chr2R 3603607 intergenic not near genes chr2R 3915262 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-509 417 chr2R 3293750 3293767 chr2R 3293827 3293830 5 73 2.0 3.5 2.8 1.3 80 chr2R 3293750 intergenic not near genes chr2R 3293790 intergenic not near genes chr2R 3293830 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-509 418 chr2R 4312950 4312987 chr2R 4313034 4313071 7 84 0.5 4.0 2.2 2.2 121 chr2R 4312950 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_7_4310001 chr2R_4310001 RAL-509 419 chr2R 4329560 4329571 chr2R 4329638 4329657 5 84 6.5 1.5 4.0 1.0 97 chr2R 4329560 intron Gprk1 - chr2R 4329608 intron Gprk1 - chr2R 4329657 intron Gprk1 - chr2R_5_4325001 chr2R_4325001 RAL-509 420 chr2R 4350768 4350784 chr2R 4350847 4350864 4 80 2.0 1.0 1.5 1.6 96 chr2R 4350768 intron Gprk1 - chr2R 4350816 intron Gprk1 - chr2R 4350864 intron Gprk1 - chr2R_4_4350001 chr2R_4350001 RAL-509 421 chr2R 4508164 4508194 chr2R 4508244 4508275 8 81 2.5 1.5 2.0 2.7 111 chr2R 4508164 intron CR44100 + chr2R 4508220 5` UTR CR44100 + chr2R 4508275 5` UTR CR44100 + chr2R_8_4505001 chr2R_4505001 RAL-509 422 chr2R 4688112 4688127 chr2R 4688204 4688220 5 93 1.0 0.5 0.8 2.8 108 chr2R 4688112 intergenic not near genes chr2R 4688166 intergenic not near genes chr2R 4688220 intergenic not near genes chr2R_5_4685001 chr2R_4685001 RAL-509 423 chr2R 4783416 4783450 chr2R 4783494 4783524 15 77 1.5 1.5 1.5 6.0 108 chr2R 4783416 intergenic not near genes chr2R 4783470 intergenic not near genes chr2R 4783524 intergenic not near genes chr2R_15_4780001 chr2R_4780001 RAL-509 424 chr2R 4838871 4838887 chr2R 4840394 4840410 transib2 6 1523 9.0 4.0 6.5 0.8 1539 chr2R 4838871 intergenic not near genes chr2R 4839640 intergenic not near genes chr2R 4840410 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-509 425 chr2R 4908913 4908941 chr2R 4909001 4909029 7 87 3.0 6.0 4.5 1.3 116 chr2R 4908913 intergenic not near genes chr2R 4908971 intergenic not near genes chr2R 4909029 intergenic not near genes chr2R_7_4905001 chr2R_4905001 RAL-509 426 chr2R 4916093 4916124 chr2R 4916171 4916202 8 78 1.0 0.0 0.5 5.3 109 chr2R 4916093 intergenic not near genes chr2R 4916148 intergenic not near genes chr2R 4916202 intergenic not near genes chr2R_8_4915001 chr2R_4915001 RAL-509 427 chr2R 4938498 4938532 chr2R 4938634 4938668 13 136 2.0 2.5 2.2 4.1 170 chr2R 4938498 intron Ir41a + chr2R 4938583 intron Ir41a + chr2R 4938668 intron Ir41a + chr2R_13_4935001 chr2R_4935001 RAL-509 428 chr2R 4940965 4940980 chr2R 4943415 4943430 5 2450 5.0 5.0 5.0 0.8 2465 chr2R 4940965 intron Ir41a + chr2R 4942198 intron Ir41a + chr2R 4943430 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-509 429 chr2R 5029690 5029714 chr2R 5029772 5029794 6 81 3.5 3.5 3.5 1.3 104 chr2R 5029690 intergenic not near genes chr2R 5029742 intergenic not near genes chr2R 5029794 intergenic not near genes chr2R_6_5025001 chr2R_5025001 RAL-509 430 chr2R 5038525 5038536 chr2R 5039322 5039333 5 797 12.5 17.0 14.8 0.3 808 chr2R 5038525 intergenic not near genes chr2R 5038929 intergenic not near genes chr2R 5039333 intergenic not near genes chr2R_5_5035001 chr2R_5035001 RAL-509 431 chr2R 5103045 5103069 chr2R 5103138 5103161 6 92 2.5 4.5 3.5 1.3 116 chr2R 5103045 intergenic not near genes chr2R 5103103 intergenic not near genes chr2R 5103161 intergenic not near genes chr2R_6_5100001 chr2R_5100001 RAL-509 432 chr2R 5122997 5123031 chr2R 5123212 5123246 10 215 3.0 2.5 2.8 2.6 249 chr2R 5122997 intron gus - chr2R 5123122 intron gus - chr2R 5123246 intron gus - chr2R_10_5120001 chr2R_5120001 RAL-509 433 chr2R 5237350 5237365 chr2R 5237431 5237446 7 82 1.0 0.0 0.5 4.7 96 chr2R 5237350 intron Nipped-A - chr2R 5237398 intron Nipped-A - chr2R 5237446 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-509 434 chr2R 5342832 5342856 chr2R 5342929 5342953 4 97 0.5 1.0 0.8 2.2 121 chr2R 5342832 intergenic not near genes chr2R 5342892 intergenic not near genes chr2R 5342953 intergenic not near genes chr2R_4_5340001 chr2R_5340001 RAL-509 435 chr2R 5354795 5354827 chr2R 5354881 5354913 12 86 0.5 3.0 1.8 4.3 118 chr2R 5354795 intergenic CG10396 + chr2R 5354854 intergenic CG10396 + chr2R 5354913 intergenic CG10396 + chr2R_12_5350001 chr2R_5350001 RAL-509 436 chr2R 5396258 5396290 chr2R 5396496 5396527 12 238 1.5 2.0 1.8 4.3 269 chr2R 5396258 intergenic not near genes chr2R 5396392 intergenic not near genes chr2R 5396527 intergenic not near genes chr2R_12_5395001 chr2R_5395001 RAL-509 437 chr2R 5410319 5410344 chr2R 5410474 5410499 6 155 1.5 1.0 1.2 2.7 180 chr2R 5410319 intergenic not near genes chr2R 5410409 intergenic not near genes chr2R 5410499 intergenic not near genes chr2R_6_5410001 chr2R_5410001 RAL-509 438 chr2R 5455779 5455805 chr2R 5455857 5455883 10 78 2.0 2.0 2.0 3.3 104 chr2R 5455779 3` UTR laccase2 + chr2R 5455831 3` UTR laccase2 + chr2R 5455883 3` UTR laccase2 + chr2R_10_5455001 chr2R_5455001 RAL-509 439 chr2R 5473369 5473400 chr2R 5473464 5473495 5 95 3.0 1.5 2.2 1.6 126 chr2R 5473369 intron CG30440 - chr2R 5473432 intron CG30440 - chr2R 5473495 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-509 440 chr2R 5476357 5476381 chr2R 5476901 5476919 9 543 5.0 5.0 5.0 1.5 562 chr2R 5476357 intron CG30440 - chr2R 5476638 intron CG30440 - chr2R 5476919 intron CG30440 - chr2R_9_5475001 chr2R_5475001 RAL-509 441 chr2R 5653040 5653077 chr2R 5653309 5653343 INE-1 5 267 4.0 1.5 2.8 1.3 303 chr2R 5653040 intergenic CG11665 - chr2R 5653192 intergenic CG11665 -,CG1344 + chr2R 5653343 intergenic CG1344 + chr2R_5_5650001 chr2R_5650001 RAL-509 442 chr2R 5771460 5771489 chr2R 5771541 5771566 7 79 3.0 2.5 2.8 1.8 106 chr2R 5771460 intron Gp210 + chr2R 5771513 intron Gp210 + chr2R 5771566 intron Gp210 + chr2R_7_5770001 chr2R_5770001 RAL-509 443 chr2R 5859975 5860013 chr2R 5860087 5860111 7 109 2.5 1.0 1.8 2.5 136 chr2R 5859975 3` UTR dpr12 + chr2R 5860043 3` UTR dpr12 + chr2R 5860111 3` UTR dpr12 + chr2R_7_5860001 chr2R_5860001 RAL-509 444 chr2R 5869276 5869301 chr2R 5874351 5874377 flea 16 5075 3.0 4.5 3.8 3.3 5101 chr2R 5869276 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874377 intergenic not near genes chr2R_16_5870001 chr2R_5870001 RAL-509 445 chr2R 5878929 5878947 chr2R 5879008 5879026 5 79 0.5 3.0 1.8 1.8 97 chr2R 5878929 intergenic CG44438 - chr2R 5878978 intergenic CG44438 - chr2R 5879026 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-509 446 chr2R 5917776 5917796 chr2R 5917855 5917875 5 79 3.0 2.5 2.8 1.3 99 chr2R 5917776 intron CG43366 + chr2R 5917826 intron CG43366 + chr2R 5917875 intron CG43366 + chr2R_5_5915001 chr2R_5915001 RAL-509 447 chr2R 5917799 5917803 chr2R 5917853 5917882 4 72 2.0 2.5 2.2 1.2 83 chr2R 5917799 intron CG43366 + chr2R 5917840 intron CG43366 + chr2R 5917882 intron CG43366 + chr2R_4_5915001 chr2R_5915001 RAL-509 448 chr2R 5945797 5945830 chr2R 5945890 5945923 5 93 1.0 1.0 1.0 2.5 126 chr2R 5945797 intergenic not near genes chr2R 5945860 intergenic not near genes chr2R 5945923 intergenic not near genes chr2R_5_5945001 chr2R_5945001 RAL-509 449 chr2R 6096742 6096752 chr2R 6101909 6101932 BS 7 5184 4.0 4.0 4.0 1.4 5190 chr2R 6096742 intron EcR - chr2R 6099337 intron EcR - chr2R 6101932 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-509 450 chr2R 6129326 6129351 chr2R 6129403 6129429 4 78 2.5 1.5 2.0 1.3 103 chr2R 6129326 intron EcR - chr2R 6129378 intron EcR - chr2R 6129429 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-509 451 chr2R 6168199 6168225 chr2R 6168278 6168307 8 82 4.0 4.0 4.0 1.6 108 chr2R 6168199 intron EcR - chr2R 6168253 intron EcR - chr2R 6168307 intron EcR - chr2R_8_6165001 chr2R_6165001 RAL-509 452 chr2R 6178683 6178713 chr2R 6178770 6178800 7 87 1.5 3.0 2.2 2.2 117 chr2R 6178683 intergenic not near genes chr2R 6178742 intergenic not near genes chr2R 6178800 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-509 453 chr2R 6236212 6236244 chr2R 6236300 6236331 17 87 1.5 0.0 0.8 9.4 119 chr2R 6236212 intron bin3 + chr2R 6236272 intron bin3 + chr2R 6236331 intron bin3 + chr2R_17_6235001 chr2R_6235001 RAL-509 454 chr2R 6247818 6247831 chr2R 6247896 6247909 5 78 1.5 2.5 2.0 1.7 91 chr2R 6247818 intron Pld + chr2R 6247864 intron Pld + chr2R 6247909 intron Pld + chr2R_5_6245001 chr2R_6245001 RAL-509 455 chr2R 6494531 6494552 chr2R 6499293 6499304 F-element 5 4759 0.5 2.5 1.5 2.0 4773 chr2R 6494531 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499304 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-509 456 chr2R 6529657 6529683 chr2R 6529749 6529774 10 91 4.5 2.5 3.5 2.2 117 chr2R 6529657 intron jing + chr2R 6529716 intron jing + chr2R 6529774 intron jing + chr2R_10_6525001 chr2R_6525001 RAL-509 457 chr2R 6530544 6530570 chr2R 6530677 6530703 6 133 2.0 1.0 1.5 2.4 159 chr2R 6530544 intron jing + chr2R 6530624 intron jing + chr2R 6530703 intron jing + chr2R_6_6530001 chr2R_6530001 RAL-509 458 chr2R 6539826 6539856 chr2R 6539944 6539971 4 116 1.5 0.0 0.8 2.2 145 chr2R 6539826 intron jing + chr2R 6539898 intron jing + chr2R 6539971 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-509 459 chr2R 6579776 6579802 chr2R 6584861 6584888 flea 7 5086 3.5 2.5 3.0 1.8 5112 chr2R 6579776 intron jing + chr2R 6582332 intron jing + chr2R 6584888 intron jing + chr2R_7_6580001 chr2R_6580001 RAL-509 460 chr2R 6679395 6679424 chr2R 6679485 6679511 11 88 1.0 4.0 2.5 3.1 116 chr2R 6679395 intron,intron CG9422 +,Tdc1 - chr2R 6679453 intron,intron CG9422 +,Tdc1 - chr2R 6679511 intron,intron CG9422 +,Tdc1 - chr2R_11_6675001 chr2R_6675001 RAL-509 461 chr2R 6712588 6712600 chr2R 6712685 6712695 8 95 4.0 3.0 3.5 1.8 107 chr2R 6712588 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712695 intron,intron CG3409 -,CG45092 - chr2R_8_6710001 chr2R_6710001 RAL-509 462 chr2R 6876222 6876250 chr2R 6876304 6876332 11 81 2.0 5.5 3.8 2.3 110 chr2R 6876222 intron,intron CR44169 +,Spn42Da - chr2R 6876277 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876332 5` UTR,intron CR44169 +,Spn42Da - chr2R_11_6875001 chr2R_6875001 RAL-509 463 chr2R 7064923 7064936 chr2R 7064998 7065009 4 75 3.5 1.0 2.2 1.2 86 chr2R 7064923 intron Tsp42Er + chr2R 7064966 intron Tsp42Er + chr2R 7065009 intron Tsp42Er + chr2R_4_7060001 chr2R_7060001 RAL-509 464 chr2R 7067595 7067615 chr2R 7067679 7067699 5 84 2.5 4.0 3.2 1.2 104 chr2R 7067595 intergenic not near genes chr2R 7067647 intergenic not near genes chr2R 7067699 intergenic not near genes chr2R_5_7065001 chr2R_7065001 RAL-509 465 chr2R 7095964 7095998 chr2R 7096064 7096098 14 99 3.5 1.5 2.5 4.0 134 chr2R 7095964 intron esn + chr2R 7096031 intron esn + chr2R 7096098 intron esn + chr2R_14_7095001 chr2R_7095001 RAL-509 466 chr2R 7209845 7209874 chr2R 7217590 7217622 roo 8 7746 1.5 2.0 1.8 2.9 7777 chr2R 7209845 intron pk + chr2R 7213734 intron pk + chr2R 7217622 intron pk + chr2R_8_7210001 chr2R_7210001 RAL-509 467 chr2R 7235823 7235836 chr2R 7240915 7240928 jockey 5 5092 5.5 1.5 3.5 1.1 5105 chr2R 7235823 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240928 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-509 468 chr2R 7262200 7262213 chr2R 7269261 7269274 297 5 7060 3.5 5.0 4.2 1.0 7074 chr2R 7262200 intergenic not near genes chr2R 7265737 intergenic not near genes chr2R 7269274 intergenic not near genes chr2R_5_7265001 chr2R_7265001 RAL-509 469 chr2R 7434897 7434918 chr2R 7439198 7439219 Juan 6 4301 4.5 5.5 5.0 1.0 4322 chr2R 7434897 intergenic so + chr2R 7437058 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-509 470 chr2R 7553570 7553591 chr2R 7554151 7554172 4 581 2.5 1.5 2.0 1.3 602 chr2R 7553570 intron Corin + chr2R 7553871 intron Corin + chr2R 7554172 intron Corin + chr2R_4_7550001 chr2R_7550001 RAL-509 471 chr2R 7608406 7608440 chr2R 7613609 7613635 I-element 6 5198 5.0 5.0 5.0 1.0 5229 chr2R 7608406 intron CG1358 - chr2R 7611020 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-509 472 chr2R 7614749 7614779 chr2R 7614835 7614838 10 84 2.5 0.0 1.2 4.5 89 chr2R 7614749 intron CG1358 - chr2R 7614794 intron CG1358 - chr2R 7614838 intron CG1358 - chr2R_10_7610001 chr2R_7610001 RAL-509 473 chr2R 7815680 7815689 chr2R 7822149 7822158 Burdock 5 6469 6.5 4.5 5.5 0.8 6478 chr2R 7815680 intergenic CG1882 + chr2R 7818919 intergenic not near genes chr2R 7822158 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-509 474 chr2R 7851263 7851291 chr2R 7851349 7851375 8 83 2.0 3.0 2.5 2.3 112 chr2R 7851263 intron Dgk - chr2R 7851319 intron Dgk - chr2R 7851375 intron Dgk - chr2R_8_7850001 chr2R_7850001 RAL-509 475 chr2R 7869188 7869199 chr2R 7873973 7873985 Doc 9 4786 7.0 3.5 5.2 1.5 4797 chr2R 7869188 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873985 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-509 476 chr2R 7942946 7942959 chr2R 7943203 7943214 6 257 0.5 1.5 1.0 3.0 268 chr2R 7942946 intron CG14764 - chr2R 7943080 intron CG14764 - chr2R 7943214 intron CG14764 - chr2R_6_7940001 chr2R_7940001 RAL-509 477 chr2R 7997445 7997454 chr2R 7997551 7997559 4 106 1.5 2.5 2.0 1.3 114 chr2R 7997445 intron Hey - chr2R 7997502 intron Hey - chr2R 7997559 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-509 478 chr2R 8015662 8015684 chr2R 8017680 8017707 5 2019 2.5 4.0 3.2 1.2 2045 chr2R 8015662 intergenic mir-4981 + chr2R 8016684 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-509 479 chr2R 8026811 8026837 chr2R 8026887 8026913 5 76 0.5 1.0 0.8 2.8 102 chr2R 8026811 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026913 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 RAL-509 480 chr2R 8067065 8067095 chr2R 8067149 8067179 9 83 1.5 2.5 2.0 3.0 114 chr2R 8067065 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067179 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-509 481 chr2R 8076678 8076710 chr2R 8076758 8076790 9 79 3.5 0.0 1.8 3.2 112 chr2R 8076678 intron lig + chr2R 8076734 intron lig + chr2R 8076790 intron lig + chr2R_9_8075001 chr2R_8075001 RAL-509 482 chr2R 8151693 8151714 chr2R 8151770 8151792 7 77 2.0 3.0 2.5 2.0 99 chr2R 8151693 intron,intron Lpin -,kermit - chr2R 8151742 intron,intron Lpin -,kermit - chr2R 8151792 intron,intron Lpin -,kermit - chr2R_7_8150001 chr2R_8150001 RAL-509 483 chr2R 8177655 8177684 chr2R 8177801 8177835 8 150 2.0 2.0 2.0 2.7 180 chr2R 8177655 intron LRP1 + chr2R 8177745 intron LRP1 + chr2R 8177835 intron LRP1 + chr2R_8_8175001 chr2R_8175001 RAL-509 484 chr2R 8259572 8259601 chr2R 8259652 8259681 10 80 0.5 2.0 1.2 4.5 109 chr2R 8259572 exon CG30369 + chr2R 8259626 exon CG30369 + chr2R 8259681 3` UTR CG30369 + chr2R_10_8255001 chr2R_8255001 RAL-509 485 chr2R 8328281 8328307 chr2R 8328365 8328390 6 84 0.0 1.0 0.5 4.0 109 chr2R 8328281 intron pdm3 + chr2R 8328336 intron pdm3 + chr2R 8328390 intron pdm3 + chr2R_6_8325001 chr2R_8325001 RAL-509 486 chr2R 8330860 8330888 chr2R 8331346 8331374 roo 8 486 3.5 4.0 3.8 1.7 514 chr2R 8330860 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331374 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-509 487 chr2R 8353734 8353763 chr2R 8353838 8353867 11 104 2.5 2.5 2.5 3.1 133 chr2R 8353734 intron pdm3 + chr2R 8353800 intron pdm3 + chr2R 8353867 intron pdm3 + chr2R_11_8350001 chr2R_8350001 RAL-509 488 chr2R 8398224 8398240 chr2R 8402990 8403021 Doc 4 4774 3.0 2.5 2.8 1.1 4797 chr2R 8398224 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403021 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-509 489 chr2R 8554124 8554133 chr2R 8554207 8554216 5 83 7.5 7.0 7.2 0.6 92 chr2R 8554124 intergenic not near genes chr2R 8554170 intergenic not near genes chr2R 8554216 intergenic not near genes chr2R_5_8550001 chr2R_8550001 RAL-509 490 chr2R 8588016 8588045 chr2R 8588100 8588124 11 84 4.0 5.5 4.8 1.9 108 chr2R 8588016 intergenic not near genes chr2R 8588070 intergenic not near genes chr2R 8588124 intergenic not near genes chr2R_11_8585001 chr2R_8585001 RAL-509 491 chr2R 8689951 8689974 chr2R 8690038 8690061 5 87 4.0 2.5 3.2 1.2 110 chr2R 8689951 intergenic not near genes chr2R 8690006 intergenic not near genes chr2R 8690061 intergenic not near genes chr2R_5_8690001 chr2R_8690001 RAL-509 492 chr2R 8722766 8722793 chr2R 8723006 8723034 pogo 12 241 3.5 2.5 3.0 3.0 268 chr2R 8722766 intron CG14767 - chr2R 8722900 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-509 493 chr2R 8777926 8777933 chr2R 8784130 8784137 diver 4 6204 0.5 2.5 1.5 1.6 6211 chr2R 8777926 intergenic not near genes chr2R 8781032 intergenic not near genes chr2R 8784137 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-509 494 chr2R 8833428 8833453 chr2R 8833510 8833535 9 82 2.5 1.0 1.8 3.2 107 chr2R 8833428 intron sns + chr2R 8833482 intron sns + chr2R 8833535 intron sns + chr2R_9_8830001 chr2R_8830001 RAL-509 495 chr2R 8941576 8941601 chr2R 8941659 8941687 5 89 0.5 1.5 1.0 2.5 111 chr2R 8941576 intergenic CR44273 +,CG13748 + chr2R 8941632 5` UTR CR44273 + chr2R 8941687 5` UTR CR44273 + chr2R_5_8940001 chr2R_8940001 RAL-509 496 chr2R 8967132 8967156 chr2R 8967222 8967245 11 90 4.5 1.5 3.0 2.8 113 chr2R 8967132 intron CG8216 - chr2R 8967188 intron CG8216 - chr2R 8967245 intron CG8216 - chr2R_11_8965001 chr2R_8965001 RAL-509 497 chr2R 8976820 8976851 chr2R 8976914 8976920 12 92 1.5 5.5 3.5 2.7 100 chr2R 8976820 intron CG8213 - chr2R 8976870 intron CG8213 - chr2R 8976920 intron CG8213 - chr2R_12_8975001 chr2R_8975001 RAL-509 498 chr2R 9151310 9151334 chr2R 9157780 9157804 Burdock 7 6470 2.0 3.5 2.8 1.8 6494 chr2R 9151310 3` UTR CG30345 + chr2R 9154557 intergenic not near genes chr2R 9157804 intergenic CG8008 - chr2R_7_9150001 chr2R_9150001 RAL-509 499 chr2R 9161976 9162003 chr2R 9162061 9162088 11 84 5.0 7.5 6.2 1.5 112 chr2R 9161976 5` UTR CR44283 + chr2R 9162032 intergenic CG8046 -,CR44283 + chr2R 9162088 3` UTR CG8046 - chr2R_11_9160001 chr2R_9160001 RAL-509 500 chr2R 9183131 9183159 chr2R 9183213 9183241 4 82 2.5 1.0 1.8 1.4 110 chr2R 9183131 intron ltd - chr2R 9183186 intron ltd - chr2R 9183241 intron ltd - chr2R_4_9180001 chr2R_9180001 RAL-509 501 chr2R 9191906 9191939 chr2R 9191991 9192025 13 85 4.5 1.5 3.0 3.2 119 chr2R 9191906 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191966 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192025 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_13_9190001 chr2R_9190001 RAL-509 502 chr2R 9212691 9212721 chr2R 9213177 9213206 roo 9 485 3.0 5.5 4.2 1.7 515 chr2R 9212691 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-509 503 chr2R 9227302 9227326 chr2R 9227376 9227402 7 75 2.5 2.0 2.2 2.2 100 chr2R 9227302 intergenic hig - chr2R 9227352 intergenic hig - chr2R 9227402 intergenic hig - chr2R_7_9225001 chr2R_9225001 RAL-509 504 chr2R 9281522 9281545 chr2R 9281597 9281621 7 75 2.0 1.5 1.8 2.5 99 chr2R 9281522 intron Pkn - chr2R 9281572 intron Pkn - chr2R 9281621 intron Pkn - chr2R_7_9280001 chr2R_9280001 RAL-509 505 chr2R 9368143 9368154 chr2R 9368216 9368226 7 74 1.5 0.0 0.8 3.9 83 chr2R 9368143 intron CG13954 - chr2R 9368184 intron CG13954 - chr2R 9368226 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-509 506 chr2R 9388656 9388687 chr2R 9388742 9388774 12 87 5.0 1.5 3.2 2.9 118 chr2R 9388656 5` UTR CG13954 - chr2R 9388715 5` UTR CG13954 - chr2R 9388774 5` UTR CG13954 - chr2R_12_9385001 chr2R_9385001 RAL-509 507 chr2R 9510667 9510694 chr2R 9510783 9510810 4 116 0.0 2.5 1.2 1.8 143 chr2R 9510667 intron brp + chr2R 9510738 intron brp + chr2R 9510810 intron brp + chr2R_4_9510001 chr2R_9510001 RAL-509 508 chr2R 9561825 9561846 chr2R 9561913 9561934 4 88 1.0 1.5 1.2 1.8 109 chr2R 9561825 3` UTR,intron CR45281 -,CG1809 + chr2R 9561880 3` UTR,intron CR45281 -,CG1809 + chr2R 9561934 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-509 509 chr2R 9726617 9726645 chr2R 9734166 9734196 17.6 4 7550 1.0 1.0 1.0 2.0 7579 chr2R 9726617 intron sqa - chr2R 9730406 intron sqa - chr2R 9734196 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-509 510 chr2R 10005558 10005574 chr2R 10005655 10005671 9 96 3.0 1.5 2.2 2.8 113 chr2R 10005558 intron Pka-R2 - chr2R 10005614 intron Pka-R2 - chr2R 10005671 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-509 511 chr2R 10005854 10005880 chr2R 10007018 10007043 1360 7 1163 5.0 4.0 4.5 1.3 1189 chr2R 10005854 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007043 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-509 512 chr2R 10086918 10086929 chr2R 10087015 10087024 4 96 2.5 1.5 2.0 1.3 106 chr2R 10086918 intron,exon CG2269 +,sut4 - chr2R 10086971 intron,5` UTR CG2269 +,sut4 - chr2R 10087024 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-509 513 chr2R 10122744 10122750 chr2R 10122953 10122960 6 210 1.5 1.5 1.5 2.4 216 chr2R 10122744 intergenic Ccs - chr2R 10122852 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_6_10120001 chr2R_10120001 RAL-509 514 chr2R 10130244 10130275 chr2R 10130328 10130359 4 84 4.0 1.5 2.8 1.1 115 chr2R 10130244 intron gem + chr2R 10130302 intron gem + chr2R 10130359 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-509 515 chr2R 10176894 10176912 chr2R 10186061 10186079 roo 6 9166 1.5 2.0 1.8 2.1 9185 chr2R 10176894 intron KCNQ - chr2R 10181486 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-509 516 chr2R 10190442 10190470 chr2R 10190525 10190538 5 71 1.0 6.5 3.8 1.0 96 chr2R 10190442 intron KCNQ - chr2R 10190490 intron KCNQ - chr2R 10190538 intron KCNQ - chr2R_5_10190001 chr2R_10190001 RAL-509 517 chr2R 10203645 10203663 chr2R 10203729 10203747 8 84 4.5 0.0 2.2 2.5 102 chr2R 10203645 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203747 intergenic not near genes chr2R_8_10200001 chr2R_10200001 RAL-509 518 chr2R 10269569 10269599 chr2R 10269663 10269693 11 94 4.0 5.0 4.5 2.0 124 chr2R 10269569 intron CAP + chr2R 10269631 intron CAP + chr2R 10269693 intron CAP + chr2R_11_10265001 chr2R_10265001 RAL-509 519 chr2R 10290115 10290134 chr2R 10290196 10290215 6 81 1.5 2.0 1.8 2.1 100 chr2R 10290115 intron CAP + chr2R 10290165 intron CAP + chr2R 10290215 intron CAP + chr2R_6_10290001 chr2R_10290001 RAL-509 520 chr2R 10300653 10300679 chr2R 10300749 10300775 4 96 1.0 0.0 0.5 2.7 122 chr2R 10300653 intron CAP + chr2R 10300714 intron CAP + chr2R 10300775 intron CAP + chr2R_4_10300001 chr2R_10300001 RAL-509 521 chr2R 10318515 10318545 chr2R 10318601 10318631 6 86 2.5 2.0 2.2 1.9 116 chr2R 10318515 intron Ndg + chr2R 10318573 intron Ndg + chr2R 10318631 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-509 522 chr2R 10332506 10332529 chr2R 10333269 10333292 11 763 28.0 26.5 27.2 0.4 786 chr2R 10332506 intron CG42732 - chr2R 10332899 intron CG42732 - chr2R 10333292 intron CG42732 - chr2R_11_10330001 chr2R_10330001 RAL-509 523 chr2R 10363861 10363891 chr2R 10363940 10363970 10 79 2.0 2.0 2.0 3.3 109 chr2R 10363861 intron CG42732 - chr2R 10363916 intron CG42732 - chr2R 10363970 intron CG42732 - chr2R_10_10360001 chr2R_10360001 RAL-509 524 chr2R 10392192 10392223 chr2R 10392350 10392381 10 159 22.0 21.5 21.8 0.4 189 chr2R 10392192 intron CG42732 - chr2R 10392286 intron CG42732 - chr2R 10392381 intron CG42732 - chr2R_10_10390001 chr2R_10390001 RAL-509 525 chr2R 10411819 10411835 chr2R 10411899 10411917 4 82 1.5 1.5 1.5 1.6 98 chr2R 10411819 intron CG42732 - chr2R 10411868 intron CG42732 - chr2R 10411917 intron CG42732 - chr2R_4_10410001 chr2R_10410001 RAL-509 526 chr2R 10457302 10457335 chr2R 10457387 10457419 4 83 2.5 6.0 4.2 0.8 117 chr2R 10457302 intron,intron Galphao +,Cyp49a1 - chr2R 10457360 intron,intron Galphao +,Cyp49a1 - chr2R 10457419 intron,intron Galphao +,Cyp49a1 - chr2R_4_10455001 chr2R_10455001 RAL-509 527 chr2R 10469020 10469052 chr2R 10469146 10469178 22 126 1.0 3.5 2.2 6.9 158 chr2R 10469020 intron CG11777 + chr2R 10469099 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_22_10465001 chr2R_10465001 RAL-509 528 chr2R 10562186 10562218 chr2R 10562274 10562306 6 88 1.0 1.5 1.2 2.7 120 chr2R 10562186 exon psq + chr2R 10562246 intron psq + chr2R 10562306 intron psq + chr2R_6_10560001 chr2R_10560001 RAL-509 529 chr2R 10622356 10622374 chr2R 10637121 10637139 mdg1 4 14765 4.0 1.5 2.8 1.1 14783 chr2R 10622356 intron CG11883 + chr2R 10629748 intron CG11883 + chr2R 10637139 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-509 530 chr2R 10644060 10644082 chr2R 10644138 10644160 4 78 3.5 1.5 2.5 1.1 100 chr2R 10644060 intron Git - chr2R 10644110 intron Git - chr2R 10644160 intron Git - chr2R_4_10640001 chr2R_10640001 RAL-509 531 chr2R 10770997 10771023 chr2R 10771078 10771104 5 81 2.0 1.0 1.5 2.0 107 chr2R 10770997 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771104 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-509 532 chr2R 10781402 10781419 chr2R 10781761 10781779 6 360 4.5 3.5 4.0 1.2 377 chr2R 10781402 intron CG33144 - chr2R 10781590 intron CG33144 - chr2R 10781779 intron CG33144 - chr2R_6_10780001 chr2R_10780001 RAL-509 533 chr2R 10790144 10790173 chr2R 10790232 10790261 7 86 1.5 3.5 2.5 2.0 117 chr2R 10790144 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790261 intron CG33144 - chr2R_7_10790001 chr2R_10790001 RAL-509 534 chr2R 10959091 10959101 chr2R 10959170 10959180 4 79 1.0 5.0 3.0 1.0 89 chr2R 10959091 intergenic not near genes chr2R 10959136 intergenic not near genes chr2R 10959180 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-509 535 chr2R 11009813 11009844 chr2R 11018987 11019014 roo 6 9169 1.5 1.5 1.5 2.4 9201 chr2R 11009813 intron luna - chr2R 11014414 intron luna - chr2R 11019014 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-509 536 chr2R 11019876 11019904 chr2R 11024942 11024970 jockey 8 5064 1.0 4.0 2.5 2.3 5094 chr2R 11019876 intron luna - chr2R 11022423 intron luna - chr2R 11024970 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-509 537 chr2R 11158868 11158884 chr2R 11159037 11159053 4 169 0.0 1.0 0.5 2.7 185 chr2R 11158868 intron CG13229 - chr2R 11158960 intron CG13229 - chr2R 11159053 intron CG13229 - chr2R_4_11155001 chr2R_11155001 RAL-509 538 chr2R 11168067 11168094 chr2R 11168147 11168175 13 81 6.0 2.5 4.2 2.5 108 chr2R 11168067 intron,intron CG13229 -,shn + chr2R 11168121 intron,intron CG13229 -,shn + chr2R 11168175 intron,intron CG13229 -,shn + chr2R_13_11165001 chr2R_11165001 RAL-509 539 chr2R 11179268 11179289 chr2R 11179354 11179371 4 85 2.0 5.0 3.5 0.9 103 chr2R 11179268 intron shn + chr2R 11179320 intron shn + chr2R 11179371 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-509 540 chr2R 11207813 11207843 chr2R 11208005 11208033 BS 10 192 4.5 3.0 3.8 2.1 220 chr2R 11207813 intron shn + chr2R 11207923 intron shn + chr2R 11208033 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-509 541 chr2R 11249176 11249183 chr2R 11249302 11249309 5 126 1.5 0.0 0.8 2.8 133 chr2R 11249176 intergenic CG43112 + chr2R 11249242 intergenic CG43112 + chr2R 11249309 intergenic CG43112 + chr2R_5_11245001 chr2R_11245001 RAL-509 542 chr2R 11256282 11256315 chr2R 11256472 11256505 7 187 1.0 2.5 1.8 2.5 223 chr2R 11256282 intergenic CG13223 +,Cpr47Eb + chr2R 11256394 intergenic CG13223 +,Cpr47Eb + chr2R 11256505 intergenic CG13223 + chr2R_7_11255001 chr2R_11255001 RAL-509 543 chr2R 11265725 11265733 chr2R 11265806 11265814 4 81 6.5 0.0 3.2 1.0 89 chr2R 11265725 exon Cpr47Ee + chr2R 11265770 intron Cpr47Ee + chr2R 11265814 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-509 544 chr2R 11284291 11284317 chr2R 11284384 11284409 10 92 3.0 4.0 3.5 2.2 118 chr2R 11284291 5` UTR CG13220 + chr2R 11284350 5` UTR CG13220 + chr2R 11284409 5` UTR CG13220 + chr2R_10_11280001 chr2R_11280001 RAL-509 545 chr2R 11415524 11415549 chr2R 11418673 11418695 opus 5 3148 2.5 3.0 2.8 1.3 3171 chr2R 11415524 intron Drip - chr2R 11417110 intron Drip - chr2R 11418695 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-509 546 chr2R 11419862 11419889 chr2R 11419992 11420019 8 129 2.0 1.0 1.5 3.2 157 chr2R 11419862 intron Drip - chr2R 11419940 intron Drip - chr2R 11420019 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-509 547 chr2R 11472650 11472678 chr2R 11473847 11473875 pogo 10 1196 4.0 5.0 4.5 1.8 1225 chr2R 11472650 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-509 548 chr2R 11493277 11493296 chr2R 11493361 11493380 4 84 2.5 3.5 3.0 1.0 103 chr2R 11493277 intron inv + chr2R 11493328 intron inv + chr2R 11493380 intron inv + chr2R_4_11490001 chr2R_11490001 RAL-509 549 chr2R 11516973 11516982 chr2R 11517054 11517063 4 81 2.5 0.0 1.2 1.8 90 chr2R 11516973 intergenic not near genes chr2R 11517018 intergenic not near genes chr2R 11517063 intergenic not near genes chr2R_4_11515001 chr2R_11515001 RAL-509 550 chr2R 11675605 11675626 chr2R 11675688 11675709 7 82 1.0 4.5 2.8 1.8 104 chr2R 11675605 intron Roc2 - chr2R 11675657 intron Roc2 - chr2R 11675709 intron Roc2 - chr2R_7_11675001 chr2R_11675001 RAL-509 551 chr2R 11724177 11724189 chr2R 11724260 11724272 4 83 0.5 2.5 1.5 1.6 95 chr2R 11724177 intron pyr + chr2R 11724224 intron pyr + chr2R 11724272 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-509 552 chr2R 11762894 11762920 chr2R 11763236 11763263 9 343 1.0 2.0 1.5 3.6 369 chr2R 11762894 intron ths + chr2R 11763078 intron ths + chr2R 11763263 intron ths + chr2R_9_11760001 chr2R_11760001 RAL-509 553 chr2R 11822981 11823002 chr2R 11823058 11823079 11 77 0.0 1.0 0.5 7.3 98 chr2R 11822981 intergenic not near genes chr2R 11823030 intergenic not near genes chr2R 11823079 intergenic not near genes chr2R_11_11820001 chr2R_11820001 RAL-509 554 chr2R 12004204 12004219 chr2R 12004284 12004299 5 80 4.0 2.0 3.0 1.2 95 chr2R 12004204 exon otk - chr2R 12004252 intron otk - chr2R 12004299 intron otk - chr2R_5_12000001 chr2R_12000001 RAL-509 555 chr2R 12145922 12145941 chr2R 12148615 12148634 4 2694 25.0 25.0 25.0 0.2 2712 chr2R 12145922 exon Hen1 + chr2R 12147278 intron,intron Hen1 +,CG8878 - chr2R 12148634 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-509 556 chr2R 12186002 12186036 chr2R 12186097 12186131 6 95 0.5 2.0 1.2 2.7 129 chr2R 12186002 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-509 557 chr2R 12187471 12187475 chr2R 12190088 12190123 14 2620 40.0 40.0 40.0 0.3 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_14_12185001 chr2R_12185001 RAL-509 558 chr2R 12210131 12210157 chr2R 12210212 12210238 5 81 2.0 3.0 2.5 1.4 107 chr2R 12210131 exon Sr-CII - chr2R 12210184 intron Sr-CII - chr2R 12210238 intron Sr-CII - chr2R_5_12210001 chr2R_12210001 RAL-509 559 chr2R 12301876 12301905 chr2R 12301953 12301980 6 74 4.5 7.5 6.0 0.9 104 chr2R 12301876 intron CG8850 - chr2R 12301928 intron CG8850 - chr2R 12301980 intron CG8850 - chr2R_6_12300001 chr2R_12300001 RAL-509 560 chr2R 12334884 12334894 chr2R 12334962 12334972 4 78 2.5 6.0 4.2 0.8 88 chr2R 12334884 intergenic CG8490 + chr2R 12334928 intergenic CG8490 + chr2R 12334972 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-509 561 chr2R 12481152 12481169 chr2R 12482956 12482967 roo 4 1801 0.5 5.5 3.0 1.0 1815 chr2R 12481152 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482967 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-509 562 chr2R 12492104 12492113 chr2R 12492190 12492206 4 91 6.5 1.0 3.8 0.8 102 chr2R 12492104 intron fdl - chr2R 12492155 intron fdl - chr2R 12492206 intron fdl - chr2R_4_12490001 chr2R_12490001 RAL-509 563 chr2R 12501691 12501724 chr2R 12503850 12503886 Rt1c 6 2156 2.0 3.5 2.8 1.6 2195 chr2R 12501691 intron fdl - chr2R 12502788 intron fdl - chr2R 12503886 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-509 564 chr2R 12504146 12504179 chr2R 12504222 12504256 11 77 4.0 2.0 3.0 2.8 110 chr2R 12504146 intron fdl - chr2R 12504201 intron fdl - chr2R 12504256 intron fdl - chr2R_11_12500001 chr2R_12500001 RAL-509 565 chr2R 12535846 12535872 chr2R 12535919 12535950 4 78 6.5 1.0 3.8 0.8 104 chr2R 12535846 intron fra + chr2R 12535898 intron fra + chr2R 12535950 intron fra + chr2R_4_12535001 chr2R_12535001 RAL-509 566 chr2R 12597968 12597990 chr2R 12598057 12598090 7 96 1.5 3.0 2.2 2.2 122 chr2R 12597968 intron Amph + chr2R 12598029 intron Amph + chr2R 12598090 intron Amph + chr2R_7_12595001 chr2R_12595001 RAL-509 567 chr2R 12771326 12771349 chr2R 12771434 12771458 5 109 2.0 1.5 1.8 1.8 132 chr2R 12771326 intergenic not near genes chr2R 12771392 intergenic not near genes chr2R 12771458 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-509 568 chr2R 12808318 12808348 chr2R 12808413 12808441 12 92 3.0 7.0 5.0 2.0 123 chr2R 12808318 intergenic not near genes chr2R 12808380 intergenic not near genes chr2R 12808441 intergenic not near genes chr2R_12_12805001 chr2R_12805001 RAL-509 569 chr2R 12836401 12836418 chr2R 12836488 12836501 4 86 1.0 1.5 1.2 1.8 100 chr2R 12836401 intergenic not near genes chr2R 12836451 intergenic not near genes chr2R 12836501 intergenic not near genes chr2R_4_12835001 chr2R_12835001 RAL-509 570 chr2R 12897461 12897485 chr2R 12897551 12897576 8 91 2.0 0.0 1.0 4.0 115 chr2R 12897461 intron vg + chr2R 12897518 intron vg + chr2R 12897576 intron vg + chr2R_8_12895001 chr2R_12895001 RAL-509 571 chr2R 13106107 13106126 chr2R 13106199 13106211 4 87 9.5 3.0 6.2 0.6 104 chr2R 13106107 intergenic not near genes chr2R 13106159 intergenic not near genes chr2R 13106211 intergenic not near genes chr2R_4_13105001 chr2R_13105001 RAL-509 572 chr2R 13121152 13121183 chr2R 13121237 13121269 9 85 1.5 0.5 1.0 4.5 117 chr2R 13121152 intron CG13325 + chr2R 13121210 intron CG13325 + chr2R 13121269 intron CG13325 + chr2R_9_13120001 chr2R_13120001 RAL-509 573 chr2R 13136841 13136856 chr2R 13141639 13141654 Doc 8 4797 3.5 4.5 4.0 1.6 4813 chr2R 13136841 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-509 574 chr2R 13167411 13167429 chr2R 13167493 13167511 5 82 1.0 1.0 1.0 2.5 100 chr2R 13167411 intron GLaz - chr2R 13167461 intron GLaz - chr2R 13167511 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-509 575 chr2R 13305499 13305509 chr2R 13305581 13305590 4 82 11.5 9.0 10.2 0.4 91 chr2R 13305499 intergenic not near genes chr2R 13305544 intergenic not near genes chr2R 13305590 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-509 576 chr2R 13309663 13309683 chr2R 13309781 13309801 10 118 2.5 0.0 1.2 4.5 138 chr2R 13309663 intergenic not near genes chr2R 13309732 intergenic not near genes chr2R 13309801 intergenic not near genes chr2R_10_13305001 chr2R_13305001 RAL-509 577 chr2R 13404887 13404908 chr2R 13404972 13404992 8 84 3.5 4.0 3.8 1.7 105 chr2R 13404887 intergenic not near genes chr2R 13404940 intergenic not near genes chr2R 13404992 intergenic not near genes chr2R_8_13400001 chr2R_13400001 RAL-509 578 chr2R 13431501 13431520 chr2R 13431569 13431599 4 76 1.5 2.5 2.0 1.3 98 chr2R 13431501 intron CG42321 - chr2R 13431550 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-509 579 chr2R 13439111 13439228 chr2R 13439225 13439304 11 116 0.0 0.0 0.0 11.0 193 chr2R 13439111 intergenic CG42321 -,cnn - chr2R 13439208 intergenic cnn -,CG42321 - chr2R 13439304 intergenic cnn -,CG42321 - chr2R_11_13435001 chr2R_13435001 RAL-509 580 chr2R 13446706 13446711 chr2R 13446787 13446792 4 81 2.5 0.0 1.2 1.8 86 chr2R 13446706 intron cnn - chr2R 13446749 intron cnn - chr2R 13446792 intron cnn - chr2R_4_13445001 chr2R_13445001 RAL-509 581 chr2R 13554753 13554772 chr2R 13554836 13554855 5 84 0.0 1.0 0.5 3.3 102 chr2R 13554753 intron Roe1 + chr2R 13554804 intron Roe1 + chr2R 13554855 intron Roe1 + chr2R_5_13550001 chr2R_13550001 RAL-509 582 chr2R 13566262 13566290 chr2R 13566342 13566370 15 80 3.5 0.0 1.8 5.4 108 chr2R 13566262 intergenic not near genes chr2R 13566316 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_15_13565001 chr2R_13565001 RAL-509 583 chr2R 13580503 13580531 chr2R 13580853 13580876 jockey 9 348 1.0 2.5 1.8 3.2 373 chr2R 13580503 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580876 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-509 584 chr2R 13652714 13652720 chr2R 13652791 13652799 5 78 4.5 4.5 4.5 0.9 85 chr2R 13652714 intron fas + chr2R 13652756 intron fas + chr2R 13652799 intron fas + chr2R_5_13650001 chr2R_13650001 RAL-509 585 chr2R 13653487 13653500 chr2R 13653742 13653753 7 258 4.0 4.0 4.0 1.4 266 chr2R 13653487 intron fas + chr2R 13653620 intron fas + chr2R 13653753 intron fas + chr2R_7_13650001 chr2R_13650001 RAL-509 586 chr2R 13728134 13728161 chr2R 13735791 13735817 opus 4 7656 1.0 0.5 0.8 2.2 7683 chr2R 13728134 intron fas + chr2R 13731976 intron fas + chr2R 13735817 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-509 587 chr2R 13768979 13769009 chr2R 13769078 13769108 8 99 3.5 5.0 4.2 1.5 129 chr2R 13768979 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-509 588 chr2R 13790331 13790341 chr2R 13790407 13790416 4 76 4.0 0.0 2.0 1.3 85 chr2R 13790331 intergenic not near genes chr2R 13790374 intergenic not near genes chr2R 13790416 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-509 589 chr2R 13925848 13925867 chr2R 13926023 13926043 8 176 3.5 2.5 3.0 2.0 195 chr2R 13925848 intron shot - chr2R 13925946 intron shot - chr2R 13926043 intron shot - chr2R_8_13925001 chr2R_13925001 RAL-509 590 chr2R 14338762 14338788 chr2R 14338868 14338893 11 105 2.0 3.5 2.8 2.9 131 chr2R 14338762 intron Shroom + chr2R 14338828 intron Shroom + chr2R 14338893 intron Shroom + chr2R_11_14335001 chr2R_14335001 RAL-509 591 chr2R 14352689 14352703 chr2R 14352783 14352784 6 91 3.5 2.5 3.0 1.5 95 chr2R 14352689 exon CG8613 + chr2R 14352736 intron CG8613 + chr2R 14352784 intron CG8613 + chr2R_6_14350001 chr2R_14350001 RAL-509 592 chr2R 14393865 14393895 chr2R 14393950 14393980 10 82 3.0 1.5 2.2 3.1 115 chr2R 14393865 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-509 593 chr2R 14405430 14405451 chr2R 14405791 14405813 10 360 2.5 4.5 3.5 2.2 383 chr2R 14405430 intergenic not near genes chr2R 14405622 intergenic not near genes chr2R 14405813 intergenic not near genes chr2R_10_14405001 chr2R_14405001 RAL-509 594 chr2R 14467306 14467327 chr2R 14476464 14476485 roo 8 9158 1.0 2.0 1.5 3.2 9179 chr2R 14467306 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-509 595 chr2R 14530781 14530792 chr2R 14530848 14530870 5 76 2.0 2.5 2.2 1.6 89 chr2R 14530781 intron ttv + chr2R 14530826 intron ttv + chr2R 14530870 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-509 596 chr2R 14565560 14565576 chr2R 14565637 14565653 5 77 4.5 3.0 3.8 1.0 93 chr2R 14565560 intron ttv + chr2R 14565606 intron ttv + chr2R 14565653 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-509 597 chr2R 14566451 14566479 chr2R 14566536 14566565 14 87 0.5 1.5 1.0 7.0 114 chr2R 14566451 intron ttv + chr2R 14566508 intron ttv + chr2R 14566565 intron ttv + chr2R_14_14565001 chr2R_14565001 RAL-509 598 chr2R 14634279 14634312 chr2R 14634367 14634399 16 88 3.5 5.5 4.5 2.9 120 chr2R 14634279 intergenic not near genes chr2R 14634339 intergenic not near genes chr2R 14634399 intergenic not near genes chr2R_16_14630001 chr2R_14630001 RAL-509 599 chr2R 14790184 14790207 chr2R 14790265 14790287 7 81 1.5 0.5 1.0 3.5 103 chr2R 14790184 intron kn - chr2R 14790236 intron kn - chr2R 14790287 intron kn - chr2R_7_14790001 chr2R_14790001 RAL-509 600 chr2R 14799869 14799884 chr2R 14799945 14799960 4 76 2.0 4.0 3.0 1.0 91 chr2R 14799869 intron kn - chr2R 14799914 intron kn - chr2R 14799960 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-509 601 chr2R 14803487 14803495 chr2R 14803567 14803569 4 78 2.5 1.0 1.8 1.4 82 chr2R 14803487 intron kn - chr2R 14803528 intron kn - chr2R 14803569 intron kn - chr2R_4_14800001 chr2R_14800001 RAL-509 602 chr2R 14850057 14850089 chr2R 14850162 14850195 12 104 20.5 23.5 22.0 0.5 138 chr2R 14850057 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850195 exon SMC2 - chr2R_12_14850001 chr2R_14850001 RAL-509 603 chr2R 14855031 14855065 chr2R 14855123 14855157 11 89 3.5 2.0 2.8 2.9 126 chr2R 14855031 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_11_14855001 chr2R_14855001 RAL-509 604 chr2R 14889207 14889238 chr2R 14897815 14897845 Max-element 5 8608 2.0 0.0 1.0 2.5 8638 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-509 605 chr2R 14911700 14911728 chr2R 14911823 14911851 10 123 2.5 3.0 2.8 2.6 151 chr2R 14911700 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_10_14910001 chr2R_14910001 RAL-509 606 chr2R 15004726 15004749 chr2R 15005055 15005078 jockey 9 329 3.0 2.0 2.5 2.6 352 chr2R 15004726 intergenic not near genes chr2R 15004902 intergenic not near genes chr2R 15005078 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-509 607 chr2R 15074803 15074830 chr2R 15075064 15075091 7 261 1.5 4.0 2.8 1.8 288 chr2R 15074803 intergenic not near genes chr2R 15074947 intergenic not near genes chr2R 15075091 intergenic not near genes chr2R_7_15070001 chr2R_15070001 RAL-509 608 chr2R 15084979 15085001 chr2R 15092028 15092050 297 10 7048 3.0 4.0 3.5 2.2 7071 chr2R 15084979 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_10_15085001 chr2R_15085001 RAL-509 609 chr2R 15100913 15100945 chr2R 15100994 15101026 10 80 1.5 3.0 2.2 3.1 113 chr2R 15100913 intergenic not near genes chr2R 15100970 intergenic not near genes chr2R 15101026 intergenic not near genes chr2R_10_15100001 chr2R_15100001 RAL-509 610 chr2R 15119331 15119351 chr2R 15127801 15127812 Tirant 7 8476 2.0 6.0 4.0 1.4 8481 chr2R 15119331 intron chn + chr2R 15123572 intron chn + chr2R 15127812 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-509 611 chr2R 15201230 15201262 chr2R 15201321 15201326 7 85 2.0 3.0 2.5 2.0 96 chr2R 15201230 intergenic CG11807 +,GPHR - chr2R 15201278 5` UTR CG11807 + chr2R 15201326 5` UTR CG11807 + chr2R_7_15200001 chr2R_15200001 RAL-509 612 chr2R 15374081 15374089 chr2R 15374157 15374163 4 76 3.5 2.0 2.8 1.1 82 chr2R 15374081 intergenic not near genes chr2R 15374122 intergenic not near genes chr2R 15374163 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-509 613 chr2R 15375071 15375078 chr2R 15375186 15375197 4 118 1.5 1.0 1.2 1.8 126 chr2R 15375071 intergenic not near genes chr2R 15375134 intergenic not near genes chr2R 15375197 intergenic not near genes chr2R_4_15375001 chr2R_15375001 RAL-509 614 chr2R 15588798 15588821 chr2R 15588875 15588896 6 77 0.5 3.0 1.8 2.1 98 chr2R 15588798 intergenic not near genes chr2R 15588847 intergenic not near genes chr2R 15588896 intergenic not near genes chr2R_6_15585001 chr2R_15585001 RAL-509 615 chr2R 15833531 15833555 chr2R 15833618 15833636 7 82 3.5 3.0 3.2 1.7 105 chr2R 15833531 intron,intron tun +,Poxn - chr2R 15833584 intron,intron tun +,Poxn - chr2R 15833636 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-509 616 chr2R 15951841 15951870 chr2R 15951914 15951946 10 75 1.0 2.5 1.8 3.6 105 chr2R 15951841 intron Strn-Mlck - chr2R 15951894 intron Strn-Mlck - chr2R 15951946 intron Strn-Mlck - chr2R_10_15950001 chr2R_15950001 RAL-509 617 chr2R 16054950 16054961 chr2R 16055033 16055034 4 80 5.5 12.0 8.8 0.4 84 chr2R 16054950 intron CG8405 + chr2R 16054992 intron CG8405 + chr2R 16055034 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-509 618 chr2R 16217781 16217797 chr2R 16217855 16217873 14 75 2.5 4.5 3.5 3.1 92 chr2R 16217781 intron mrj - chr2R 16217827 intron mrj - chr2R 16217873 intron mrj - chr2R_14_16215001 chr2R_16215001 RAL-509 619 chr2R 16245414 16245427 chr2R 16245508 16245521 4 94 0.0 1.0 0.5 2.7 107 chr2R 16245414 intron CngA - chr2R 16245468 intron CngA - chr2R 16245521 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-509 620 chr2R 16480763 16480776 chr2R 16480839 16480852 5 76 1.5 5.5 3.5 1.1 89 chr2R 16480763 intergenic not near genes chr2R 16480808 intergenic not near genes chr2R 16480852 intergenic not near genes chr2R_5_16480001 chr2R_16480001 RAL-509 621 chr2R 16511804 16511830 chr2R 16511966 16511991 6 162 1.0 0.0 0.5 4.0 187 chr2R 16511804 intron Sema-2a + chr2R 16511898 intron Sema-2a + chr2R 16511991 intron Sema-2a + chr2R_6_16510001 chr2R_16510001 RAL-509 622 chr2R 16539646 16539671 chr2R 16544855 16544878 copia 6 5209 1.0 3.5 2.2 1.9 5232 chr2R 16539646 intergenic not near genes chr2R 16542262 intergenic not near genes chr2R 16544878 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-509 623 chr2R 16617058 16617088 chr2R 16617137 16617167 9 79 3.5 2.0 2.8 2.4 109 chr2R 16617058 intron CG5065 + chr2R 16617112 intron CG5065 + chr2R 16617167 intron CG5065 + chr2R_9_16615001 chr2R_16615001 RAL-509 624 chr2R 16617543 16617568 chr2R 16617616 16617625 7 68 2.5 1.5 2.0 2.3 82 chr2R 16617543 intron CG5065 + chr2R 16617584 intron CG5065 + chr2R 16617625 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-509 625 chr2R 16657633 16657646 chr2R 16657721 16657732 4 88 1.0 2.5 1.8 1.4 99 chr2R 16657633 intron Picot - chr2R 16657682 intron Picot - chr2R 16657732 intron Picot - chr2R_4_16655001 chr2R_16655001 RAL-509 626 chr2R 16705231 16705259 chr2R 16705357 16705369 6 124 3.5 6.0 4.8 1.0 138 chr2R 16705231 intron CG30463 - chr2R 16705300 intron CG30463 - chr2R 16705369 intron CG30463 - chr2R_6_16705001 chr2R_16705001 RAL-509 627 chr2R 16732632 16732654 chr2R 16732719 16732741 7 86 5.0 4.0 4.5 1.3 109 chr2R 16732632 5` UTR CG30463 - chr2R 16732686 5` UTR CG30463 - chr2R 16732741 5` UTR CG30463 - chr2R_7_16730001 chr2R_16730001 RAL-509 628 chr2R 16737142 16737165 chr2R 16737242 16737265 7 98 2.5 2.5 2.5 2.0 123 chr2R 16737142 3` UTR CG43104 - chr2R 16737204 3` UTR CG43104 - chr2R 16737265 exon CG43104 - chr2R_7_16735001 chr2R_16735001 RAL-509 629 chr2R 16740884 16740921 chr2R 16740978 16741015 7 90 1.0 3.5 2.2 2.2 131 chr2R 16740884 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16741015 intergenic not near genes chr2R_7_16740001 chr2R_16740001 RAL-509 630 chr2R 16775656 16775672 chr2R 16775920 16775936 6 264 2.0 1.0 1.5 2.4 280 chr2R 16775656 3` UTR Arp53D + chr2R 16775796 intergenic Arp53D + chr2R 16775936 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-509 631 chr2R 16787477 16787493 chr2R 16787559 16787574 4 82 0.5 0.0 0.2 3.3 97 chr2R 16787477 intron CG5522 + chr2R 16787526 intron CG5522 + chr2R 16787574 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-509 632 chr2R 16893775 16893805 chr2R 16893858 16893886 8 80 2.5 3.5 3.0 2.0 111 chr2R 16893775 intron CG8910 - chr2R 16893830 intron CG8910 - chr2R 16893886 intron CG8910 - chr2R_8_16890001 chr2R_16890001 RAL-509 633 chr2R 16962712 16962737 chr2R 16963065 16963090 6 353 1.5 1.5 1.5 2.4 378 chr2R 16962712 intergenic not near genes chr2R 16962901 intergenic not near genes chr2R 16963090 intergenic not near genes chr2R_6_16960001 chr2R_16960001 RAL-509 634 chr2R 16972273 16972294 chr2R 16972438 16972459 5 165 2.0 6.5 4.2 1.0 186 chr2R 16972273 intergenic not near genes chr2R 16972366 intergenic not near genes chr2R 16972459 intergenic not near genes chr2R_5_16970001 chr2R_16970001 RAL-509 635 chr2R 16993520 16993552 chr2R 16993609 16993641 7 89 6.0 1.0 3.5 1.6 121 chr2R 16993520 intron Cbp53E + chr2R 16993580 intron Cbp53E + chr2R 16993641 intron Cbp53E + chr2R_7_16990001 chr2R_16990001 RAL-509 636 chr2R 17100766 17100784 chr2R 17100842 17100859 4 76 4.0 3.5 3.8 0.8 93 chr2R 17100766 intron CG30456 + chr2R 17100812 intron CG30456 + chr2R 17100859 intron CG30456 + chr2R_4_17100001 chr2R_17100001 RAL-509 637 chr2R 17147243 17147263 chr2R 17152274 17152294 jockey 11 5031 3.0 3.0 3.0 2.8 5051 chr2R 17147243 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152294 intergenic not near genes chr2R_11_17145001 chr2R_17145001 RAL-509 638 chr2R 17161355 17161360 chr2R 17161562 17161565 4 206 5.0 0.0 2.5 1.1 210 chr2R 17161355 intergenic not near genes chr2R 17161460 intergenic not near genes chr2R 17161565 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-509 639 chr2R 17176353 17176389 chr2R 17182543 17182579 diver 14 6189 1.5 0.5 1.0 7.0 6226 chr2R 17176353 intergenic not near genes chr2R 17179466 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_14_17175001 chr2R_17175001 RAL-509 640 chr2R 17236507 17236541 chr2R 17241711 17241744 copia 11 5202 1.5 3.0 2.2 3.4 5237 chr2R 17236507 intron mbl + chr2R 17239126 intron mbl + chr2R 17241744 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-509 641 chr2R 17247985 17248000 chr2R 17248094 17248117 6 116 1.5 0.5 1.0 3.0 132 chr2R 17247985 intron mbl + chr2R 17248051 intron mbl + chr2R 17248117 intron mbl + chr2R_6_17245001 chr2R_17245001 RAL-509 642 chr2R 17389269 17389303 chr2R 17389357 17389391 6 90 3.5 3.5 3.5 1.3 122 chr2R 17389269 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389391 intergenic CR44344 - chr2R_6_17385001 chr2R_17385001 RAL-509 643 chr2R 17443779 17443802 chr2R 17443856 17443878 4 76 1.5 1.0 1.2 1.8 99 chr2R 17443779 intron EDTP - chr2R 17443828 intron EDTP - chr2R 17443878 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-509 644 chr2R 17459016 17459039 chr2R 17459100 17459124 5 85 3.0 3.0 3.0 1.2 108 chr2R 17459016 intron CG14478 + chr2R 17459070 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-509 645 chr2R 17627756 17627784 chr2R 17628081 17628111 16 325 5.0 5.5 5.2 2.6 355 chr2R 17627756 intron CG10936 - chr2R 17627934 intron CG10936 - chr2R 17628111 intron CG10936 - chr2R_16_17625001 chr2R_17625001 RAL-509 646 chr2R 17709987 17710111 chr2R 17710078 17710189 10 84 1.0 1.0 1.0 5.0 202 chr2R 17709987 intron CG6424 - chr2R 17710088 intron CG6424 - chr2R 17710189 intron CG6424 - chr2R_10_17710001 chr2R_17710001 RAL-509 647 chr2R 17717070 17717092 chr2R 17718850 17718872 4 1780 10.0 12.5 11.2 0.3 1802 chr2R 17717070 5` UTR CG6424 - chr2R 17717971 intron CG6424 - chr2R 17718872 intron CG6424 - chr2R_4_17715001 chr2R_17715001 RAL-509 648 chr2R 17784029 17784057 chr2R 17784270 17784298 pogo 9 241 4.5 3.5 4.0 1.8 269 chr2R 17784029 intergenic mir-31a - chr2R 17784164 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-509 649 chr2R 17897456 17897479 chr2R 17897572 17897595 4 115 4.0 0.0 2.0 1.3 139 chr2R 17897456 intron Elk + chr2R 17897526 intron Elk + chr2R 17897595 intron Elk + chr2R_4_17895001 chr2R_17895001 RAL-509 650 chr2R 17918177 17918193 chr2R 17918254 17918269 4 76 2.0 0.5 1.2 1.8 92 chr2R 17918177 intron Elk + chr2R 17918223 intron Elk + chr2R 17918269 intron Elk + chr2R_4_17915001 chr2R_17915001 RAL-509 651 chr2R 18045302 18045327 chr2R 18045390 18045409 10 87 4.0 2.0 3.0 2.5 107 chr2R 18045302 intergenic CG5770 - chr2R 18045356 intergenic CG5770 - chr2R 18045409 intergenic CG5770 - chr2R_10_18045001 chr2R_18045001 RAL-509 652 chr2R 18054578 18054614 chr2R 18054660 18054695 4 82 0.5 1.5 1.0 2.0 117 chr2R 18054578 intergenic CR45313 + chr2R 18054636 intergenic CR45313 + chr2R 18054695 intergenic CR45313 + chr2R_4_18050001 chr2R_18050001 RAL-509 653 chr2R 18111686 18111710 chr2R 18115554 18115578 F-element 4 3868 0.0 2.0 1.0 2.0 3892 chr2R 18111686 intergenic not near genes chr2R 18113632 intergenic not near genes chr2R 18115578 intergenic not near genes chr2R_4_18110001 chr2R_18110001 RAL-509 654 chr2R 18127369 18127379 chr2R 18127483 18127493 6 115 0.0 3.5 1.8 2.1 124 chr2R 18127369 intron Spn55B + chr2R 18127431 intron Spn55B + chr2R 18127493 intron Spn55B + chr2R_6_18125001 chr2R_18125001 RAL-509 655 chr2R 18171502 18171523 chr2R 18171641 18171662 9 139 5.0 2.5 3.8 1.9 160 chr2R 18171502 intron Dgp-1 - chr2R 18171582 intron Dgp-1 - chr2R 18171662 intron Dgp-1 - chr2R_9_18170001 chr2R_18170001 RAL-509 656 chr2R 18241814 18241835 chr2R 18241909 18241930 6 95 6.0 1.0 3.5 1.3 116 chr2R 18241814 intergenic not near genes chr2R 18241872 intergenic not near genes chr2R 18241930 intergenic not near genes chr2R_6_18240001 chr2R_18240001 RAL-509 657 chr2R 18259660 18259693 chr2R 18260043 18260076 9 378 1.5 2.5 2.0 3.0 416 chr2R 18259660 intergenic not near genes chr2R 18259868 intergenic not near genes chr2R 18260076 intergenic not near genes chr2R_9_18255001 chr2R_18255001 RAL-509 658 chr2R 18358395 18358414 chr2R 18372606 18372626 roo 7 14212 4.5 6.5 5.5 1.1 14231 chr2R 18358395 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372626 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-509 659 chr2R 18408298 18408315 chr2R 18408419 18408435 7 119 1.0 6.0 3.5 1.6 137 chr2R 18408298 exon GstE8 + chr2R 18408366 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-509 660 chr2R 18455826 18455849 chr2R 18456116 18456140 7 291 6.0 1.5 3.8 1.5 314 chr2R 18455826 intergenic not near genes chr2R 18455983 intergenic not near genes chr2R 18456140 intergenic CG30116 - chr2R_7_18455001 chr2R_18455001 RAL-509 661 chr2R 18528199 18528222 chr2R 18528279 18528304 10 80 4.0 5.0 4.5 1.8 105 chr2R 18528199 intron CG10924 + chr2R 18528252 intron CG10924 + chr2R 18528304 intron CG10924 + chr2R_10_18525001 chr2R_18525001 RAL-509 662 chr2R 18575805 18575830 chr2R 18581989 18582012 3S18 9 6185 2.5 6.5 4.5 1.6 6207 chr2R 18575805 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582012 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-509 663 chr2R 18590875 18590900 chr2R 18600027 18600052 roo 5 9151 2.0 3.5 2.8 1.3 9177 chr2R 18590875 intron GEFmeso - chr2R 18595464 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-509 664 chr2R 18646419 18646435 chr2R 18646563 18646580 5 144 1.0 3.5 2.2 1.6 161 chr2R 18646419 intron SP2637 - chr2R 18646500 intron SP2637 - chr2R 18646580 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-509 665 chr2R 18692900 18692921 chr2R 18692987 18693008 8 87 0.5 3.5 2.0 2.7 108 chr2R 18692900 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_8_18690001 chr2R_18690001 RAL-509 666 chr2R 18785919 18785949 chr2R 18785998 18786027 6 78 3.0 4.5 3.8 1.2 108 chr2R 18785919 intron CG15080 + chr2R 18785973 intron CG15080 + chr2R 18786027 intron CG15080 + chr2R_6_18785001 chr2R_18785001 RAL-509 667 chr2R 18992015 18992037 chr2R 18992156 18992178 7 141 6.5 5.0 5.8 1.0 163 chr2R 18992015 intron tn + chr2R 18992096 intron tn + chr2R 18992178 intron tn + chr2R_7_18990001 chr2R_18990001 RAL-509 668 chr2R 19012939 19012968 chr2R 19013033 19013062 11 94 3.0 7.0 5.0 1.8 123 chr2R 19012939 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013062 intergenic not near genes chr2R_11_19010001 chr2R_19010001 RAL-509 669 chr2R 19078171 19078182 chr2R 19078281 19078287 4 108 2.5 4.5 3.5 0.9 116 chr2R 19078171 intron 5-HT1A + chr2R 19078229 intron 5-HT1A + chr2R 19078287 intron 5-HT1A + chr2R_4_19075001 chr2R_19075001 RAL-509 670 chr2R 19150867 19150882 chr2R 19151013 19151028 4 146 1.5 2.0 1.8 1.4 161 chr2R 19150867 intron ena + chr2R 19150948 intron ena + chr2R 19151028 intron ena + chr2R_4_19150001 chr2R_19150001 RAL-509 671 chr2R 19177869 19177900 chr2R 19177948 19177949 6 72 2.0 5.0 3.5 1.3 80 chr2R 19177869 3` UTR CG10737 + chr2R 19177909 3` UTR CG10737 + chr2R 19177949 3` UTR CG10737 + chr2R_6_19175001 chr2R_19175001 RAL-509 672 chr2R 19373685 19373714 chr2R 19373866 19373895 15 180 1.5 3.5 2.5 4.3 210 chr2R 19373685 5` UTR CG9416 - chr2R 19373790 intergenic CG9416 - chr2R 19373895 intergenic CG9416 - chr2R_15_19370001 chr2R_19370001 RAL-509 673 chr2R 19536467 19536491 chr2R 19536547 19536571 8 81 3.0 1.0 2.0 2.7 104 chr2R 19536467 intron sm - chr2R 19536519 intron sm - chr2R 19536571 intron sm - chr2R_8_19535001 chr2R_19535001 RAL-509 674 chr2R 19555587 19555608 chr2R 19555671 19555678 6 82 2.0 5.0 3.5 1.3 91 chr2R 19555587 intron sm - chr2R 19555632 intron sm - chr2R 19555678 intron sm - chr2R_6_19555001 chr2R_19555001 RAL-509 675 chr2R 19588748 19588780 chr2R 19588826 19588855 7 78 2.0 3.5 2.8 1.8 107 chr2R 19588748 intron sm - chr2R 19588802 intron sm - chr2R 19588855 intron sm - chr2R_7_19585001 chr2R_19585001 RAL-509 676 chr2R 19774016 19774043 chr2R 19774127 19774156 7 113 2.0 2.5 2.2 2.2 140 chr2R 19774016 intergenic not near genes chr2R 19774086 intergenic not near genes chr2R 19774156 intergenic not near genes chr2R_7_19770001 chr2R_19770001 RAL-509 677 chr2R 19776594 19776630 chr2R 19779916 19779953 jockey 12 3322 4.5 4.0 4.2 2.3 3359 chr2R 19776594 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-509 678 chr2R 19899460 19899482 chr2R 19899580 19899580 6 114 2.5 1.0 1.8 2.1 120 chr2R 19899460 intergenic not near genes chr2R 19899520 intergenic not near genes chr2R 19899580 intergenic not near genes chr2R_6_19895001 chr2R_19895001 RAL-509 679 chr2R 19914843 19914867 chr2R 19922255 19922279 mdg1 10 7411 6.5 0.5 3.5 2.2 7436 chr2R 19914843 intergenic not near genes chr2R 19918561 intergenic not near genes chr2R 19922279 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-509 680 chr2R 19957432 19957456 chr2R 19962633 19962658 copia 11 5202 4.0 3.5 3.8 2.3 5226 chr2R 19957432 intergenic CG44623 + chr2R 19960045 intergenic not near genes chr2R 19962658 intergenic not near genes chr2R_11_19960001 chr2R_19960001 RAL-509 681 chr2R 19997021 19997043 chr2R 19997097 19997118 9 75 3.0 2.0 2.5 2.6 97 chr2R 19997021 intergenic not near genes chr2R 19997070 intergenic not near genes chr2R 19997118 intergenic not near genes chr2R_9_19995001 chr2R_19995001 RAL-509 682 chr2R 20161887 20161912 chr2R 20161965 20161990 6 78 0.0 2.5 1.2 2.7 103 chr2R 20161887 intergenic not near genes chr2R 20161938 intergenic not near genes chr2R 20161990 intergenic not near genes chr2R_6_20160001 chr2R_20160001 RAL-509 683 chr2R 20183983 20184012 chr2R 20184063 20184092 7 80 2.0 1.5 1.8 2.5 109 chr2R 20183983 intergenic not near genes chr2R 20184038 intergenic not near genes chr2R 20184092 intergenic not near genes chr2R_7_20180001 chr2R_20180001 RAL-509 684 chr2R 20296650 20296680 chr2R 20296775 20296809 8 128 2.0 1.0 1.5 3.2 159 chr2R 20296650 intergenic not near genes chr2R 20296730 intergenic not near genes chr2R 20296809 intergenic not near genes chr2R_8_20295001 chr2R_20295001 RAL-509 685 chr2R 20326764 20326792 chr2R 20326839 20326858 10 74 2.5 3.5 3.0 2.5 94 chr2R 20326764 5` UTR MED8 - chr2R 20326811 intergenic MED8 -,CG8929 + chr2R 20326858 intergenic MED8 -,CG8929 + chr2R_10_20325001 chr2R_20325001 RAL-509 686 chr2R 20395028 20395058 chr2R 20395199 20395234 5 174 2.0 0.0 1.0 2.5 206 chr2R 20395028 intergenic not near genes chr2R 20395131 intergenic not near genes chr2R 20395234 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-509 687 chr2R 20405085 20405100 chr2R 20405156 20405186 7 83 2.0 0.5 1.2 3.2 101 chr2R 20405085 intergenic not near genes chr2R 20405136 intergenic not near genes chr2R 20405186 intergenic not near genes chr2R_7_20405001 chr2R_20405001 RAL-509 688 chr2R 20408521 20408549 chr2R 20408593 20408626 12 76 2.5 2.5 2.5 3.4 105 chr2R 20408521 intergenic not near genes chr2R 20408574 intergenic not near genes chr2R 20408626 intergenic not near genes chr2R_12_20405001 chr2R_20405001 RAL-509 689 chr2R 20502287 20502309 chr2R 20502401 20502423 5 114 0.5 2.5 1.5 2.0 136 chr2R 20502287 intergenic not near genes chr2R 20502355 intergenic not near genes chr2R 20502423 intergenic not near genes chr2R_5_20500001 chr2R_20500001 RAL-509 690 chr2R 20510338 20510357 chr2R 20510662 20510680 5 324 3.0 4.5 3.8 1.0 342 chr2R 20510338 intergenic not near genes chr2R 20510509 intergenic not near genes chr2R 20510680 intergenic CR44648 + chr2R_5_20510001 chr2R_20510001 RAL-509 691 chr2R 20572575 20572588 chr2R 20572665 20572678 6 90 2.5 1.5 2.0 2.0 103 chr2R 20572575 intron qsm - chr2R 20572626 intron qsm - chr2R 20572678 intron qsm - chr2R_6_20570001 chr2R_20570001 RAL-509 692 chr2R 20601722 20601752 chr2R 20601807 20601837 5 85 0.0 1.5 0.8 2.8 115 chr2R 20601722 intron bl + chr2R 20601780 intron bl + chr2R 20601837 intron bl + chr2R_5_20600001 chr2R_20600001 RAL-509 693 chr2R 20674205 20674219 chr2R 20674292 20674307 5 90 2.5 3.5 3.0 1.2 102 chr2R 20674205 intergenic not near genes chr2R 20674256 intergenic not near genes chr2R 20674307 intergenic not near genes chr2R_5_20670001 chr2R_20670001 RAL-509 694 chr2R 20739445 20739471 chr2R 20744212 20744239 F-element 4 4767 2.5 1.5 2.0 1.3 4794 chr2R 20739445 intron dpr + chr2R 20741842 intron dpr + chr2R 20744239 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-509 695 chr2R 21030243 21030275 chr2R 21030318 21030351 8 76 3.0 2.0 2.5 2.3 108 chr2R 21030243 intergenic CR45148 - chr2R 21030297 intergenic CR45148 - chr2R 21030351 intergenic CR45148 - chr2R_8_21030001 chr2R_21030001 RAL-509 696 chr2R 21040862 21040893 chr2R 21040938 21040969 12 74 1.0 4.0 2.5 3.4 107 chr2R 21040862 intergenic not near genes chr2R 21040916 intergenic not near genes chr2R 21040969 intergenic not near genes chr2R_12_21040001 chr2R_21040001 RAL-509 697 chr2R 21055764 21055791 chr2R 21055839 21055868 5 73 1.5 3.5 2.5 1.4 104 chr2R 21055764 intron shg - chr2R 21055816 intron shg - chr2R 21055868 exon shg - chr2R_5_21055001 chr2R_21055001 RAL-509 698 chr2R 21151116 21151146 chr2R 21153749 21153779 opus 7 2633 4.5 2.0 3.2 1.7 2663 chr2R 21151116 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-509 699 chr2R 21188227 21188232 chr2R 21188302 21188313 4 80 3.5 2.0 2.8 1.1 86 chr2R 21188227 exon tud + chr2R 21188270 intron tud + chr2R 21188313 intron tud + chr2R_4_21185001 chr2R_21185001 RAL-509 700 chr2R 21218376 21218404 chr2R 21218715 21218742 13 339 2.0 2.5 2.2 4.1 366 chr2R 21218376 3` UTR ASPP - chr2R 21218559 3` UTR ASPP - chr2R 21218742 3` UTR ASPP - chr2R_13_21215001 chr2R_21215001 RAL-509 701 chr2R 21226397 21226425 chr2R 21226490 21226517 8 93 3.5 4.5 4.0 1.6 120 chr2R 21226397 intron ASPP - chr2R 21226457 intron ASPP - chr2R 21226517 intron ASPP - chr2R_8_21225001 chr2R_21225001 RAL-509 702 chr2R 21381514 21381541 chr2R 21381601 21381629 8 88 3.0 3.5 3.2 1.9 115 chr2R 21381514 intergenic not near genes chr2R 21381572 intergenic not near genes chr2R 21381629 intergenic not near genes chr2R_8_21380001 chr2R_21380001 RAL-509 703 chr2R 21388006 21388022 chr2R 21393884 21393902 7 5874 32.5 19.5 26.0 0.3 5896 chr2R 21388006 exon Acox57D-p + chr2R 21390954 exon Acox57D-d + chr2R 21393902 3` UTR Sdc - chr2R_7_21390001 chr2R_21390001 RAL-509 704 chr2R 21410087 21410106 chr2R 21410157 21410184 6 77 7.0 0.0 3.5 1.3 97 chr2R 21410087 intron Sdc - chr2R 21410136 intron Sdc - chr2R 21410184 intron Sdc - chr2R_6_21410001 chr2R_21410001 RAL-509 705 chr2R 21456550 21456560 chr2R 21456627 21456636 6 75 1.5 2.5 2.0 2.0 86 chr2R 21456550 intron Sdc - chr2R 21456593 intron Sdc - chr2R 21456636 intron Sdc - chr2R_6_21455001 chr2R_21455001 RAL-509 706 chr2R 21472310 21472322 chr2R 21472388 21472400 4 78 4.5 2.5 3.5 0.9 90 chr2R 21472310 intron Sdc - chr2R 21472355 intron Sdc - chr2R 21472400 intron Sdc - chr2R_4_21470001 chr2R_21470001 RAL-509 707 chr2R 21521760 21521791 chr2R 21521846 21521877 13 84 1.0 0.5 0.8 7.2 117 chr2R 21521760 exon CG30289 - chr2R 21521818 exon CG30289 - chr2R 21521877 intergenic CG30289 - chr2R_13_21520001 chr2R_21520001 RAL-509 708 chr2R 21612360 21612376 chr2R 21612446 21612464 6 87 6.0 1.0 3.5 1.3 104 chr2R 21612360 intron CG15673 - chr2R 21612412 intron CG15673 - chr2R 21612464 intron CG15673 - chr2R_6_21610001 chr2R_21610001 RAL-509 709 chr2R 21700153 21700185 chr2R 21700239 21700271 7 86 2.0 4.5 3.2 1.7 118 chr2R 21700153 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-509 710 chr2R 21753083 21753116 chr2R 21753568 21753601 roo 13 484 3.5 2.0 2.8 3.4 518 chr2R 21753083 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_13_21750001 chr2R_21750001 RAL-509 711 chr2R 21809523 21809558 chr2R 21817763 21817798 roo 12 8240 3.5 5.0 4.2 2.3 8275 chr2R 21809523 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_12_21810001 chr2R_21810001 RAL-509 712 chr2R 21841475 21841508 chr2R 21841560 21841590 11 84 0.0 1.0 0.5 7.3 115 chr2R 21841475 intergenic not near genes chr2R 21841532 intergenic not near genes chr2R 21841590 intergenic not near genes chr2R_11_21840001 chr2R_21840001 RAL-509 713 chr2R 21863513 21863521 chr2R 21863604 21863612 4 92 0.0 2.5 1.2 1.8 99 chr2R 21863513 intergenic not near genes chr2R 21863562 intergenic not near genes chr2R 21863612 intergenic not near genes chr2R_4_21860001 chr2R_21860001 RAL-509 714 chr2R 21888315 21888323 chr2R 21888406 21888414 4 91 2.0 2.0 2.0 1.3 99 chr2R 21888315 intron Fili + chr2R 21888364 intron Fili + chr2R 21888414 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-509 715 chr2R 21906288 21906303 chr2R 21906389 21906404 6 100 3.0 6.0 4.5 1.1 116 chr2R 21906288 intron Fili + chr2R 21906346 intron Fili + chr2R 21906404 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-509 716 chr2R 21932251 21932282 chr2R 21932325 21932359 10 77 2.0 4.5 3.2 2.4 108 chr2R 21932251 intron Fili + chr2R 21932305 intron Fili + chr2R 21932359 intron Fili + chr2R_10_21930001 chr2R_21930001 RAL-509 717 chr2R 21935081 21935097 chr2R 21935161 21935176 4 80 2.5 1.0 1.8 1.4 95 chr2R 21935081 intron,exon Fili +,CG43742 - chr2R 21935128 intron,exon Fili +,CG43742 - chr2R 21935176 intron,exon Fili +,CG43742 - chr2R_4_21935001 chr2R_21935001 RAL-509 718 chr2R 22004299 22004311 chr2R 22004393 22004405 4 94 2.0 0.0 1.0 2.0 106 chr2R 22004299 intron CG34370 - chr2R 22004352 intron CG34370 - chr2R 22004405 intron CG34370 - chr2R_4_22000001 chr2R_22000001 RAL-509 719 chr2R 22072680 22072716 chr2R 22072765 22072801 11 85 1.5 4.5 3.0 2.8 121 chr2R 22072680 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072801 exon CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-509 720 chr2R 22095976 22095993 chr2R 22096059 22096076 11 83 4.0 5.0 4.5 2.0 100 chr2R 22095976 intron CG11073 - chr2R 22096026 intron CG11073 - chr2R 22096076 intron CG11073 - chr2R_11_22095001 chr2R_22095001 RAL-509 721 chr2R 22185674 22185688 chr2R 22185773 22185787 7 99 1.0 0.0 0.5 4.7 113 chr2R 22185674 3` UTR MED16 + chr2R 22185730 3` UTR MED16 + chr2R 22185787 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-509 722 chr2R 22189445 22189474 chr2R 22189572 22189601 8 126 1.5 0.5 1.0 4.0 156 chr2R 22189445 3` UTR Vps35 + chr2R 22189523 3` UTR Vps35 + chr2R 22189601 3` UTR Vps35 + chr2R_8_22185001 chr2R_22185001 RAL-509 723 chr2R 22292070 22292099 chr2R 22292157 22292186 10 86 2.0 2.5 2.2 3.1 116 chr2R 22292070 5` UTR CR43422 + chr2R 22292128 5` UTR CR43422 + chr2R 22292186 5` UTR CR43422 + chr2R_10_22290001 chr2R_22290001 RAL-509 724 chr2R 22327312 22327331 chr2R 22333679 22333710 8 6369 27.5 24.5 26.0 0.3 6398 chr2R 22327312 exon Gp150 + chr2R 22330511 exon,intron T3dh -,pgc + chr2R 22333710 3` UTR Liprin-gamma - chr2R_8_22330001 chr2R_22330001 RAL-509 725 chr2R 22349697 22349721 chr2R 22351481 22351505 jockey 9 1783 2.5 3.5 3.0 2.2 1808 chr2R 22349697 intron Liprin-gamma - chr2R 22350601 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 RAL-509 726 chr2R 22499850 22499879 chr2R 22499926 22499955 9 76 0.5 3.0 1.8 3.2 105 chr2R 22499850 intron px - chr2R 22499902 intron px - chr2R 22499955 intron px - chr2R_9_22495001 chr2R_22495001 RAL-509 727 chr2R 22503880 22503891 chr2R 22503974 22503986 4 95 0.0 1.5 0.8 2.2 106 chr2R 22503880 intron px - chr2R 22503933 intron px - chr2R 22503986 intron px - chr2R_4_22500001 chr2R_22500001 RAL-509 728 chr2R 22545624 22545652 chr2R 22545703 22545731 6 79 3.5 0.5 2.0 2.0 107 chr2R 22545624 intron px - chr2R 22545678 intron px - chr2R 22545731 intron px - chr2R_6_22545001 chr2R_22545001 RAL-509 729 chr2R 22575661 22575694 chr2R 22575740 22575772 16 76 1.5 3.0 2.2 5.0 111 chr2R 22575661 intron dnr1 - chr2R 22575716 intron dnr1 - chr2R 22575772 intron dnr1 - chr2R_16_22575001 chr2R_22575001 RAL-509 730 chr2R 22620829 22620852 chr2R 22620929 22620952 10 99 2.5 2.0 2.2 3.1 123 chr2R 22620829 5` UTR CG33143 + chr2R 22620890 5` UTR CG33143 + chr2R 22620952 5` UTR CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-509 731 chr2R 22626953 22626960 chr2R 22627030 22627037 4 76 0.5 3.5 2.0 1.3 84 chr2R 22626953 intron CG33143 + chr2R 22626995 intron CG33143 + chr2R 22627037 intron CG33143 + chr2R_4_22625001 chr2R_22625001 RAL-509 732 chr2R 22723236 22723260 chr2R 22723312 22723336 7 76 1.5 3.5 2.5 2.0 100 chr2R 22723236 intron jbug - chr2R 22723286 intron jbug - chr2R 22723336 intron jbug - chr2R_7_22720001 chr2R_22720001 RAL-509 733 chr2R 22756552 22756585 chr2R 22756629 22756662 11 77 1.0 0.5 0.8 6.1 110 chr2R 22756552 intron,intron CG42260 -,CR30267 + chr2R 22756607 intron,intron CG42260 -,CR30267 + chr2R 22756662 intron,intron CG42260 -,CR30267 + chr2R_11_22755001 chr2R_22755001 RAL-509 734 chr2R 22774960 22774997 chr2R 22775379 22775416 jockey 14 418 3.0 4.0 3.5 3.1 456 chr2R 22774960 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_14_22775001 chr2R_22775001 RAL-509 735 chr2R 22785730 22785761 chr2R 22785806 22785839 5 78 0.5 0.5 0.5 3.3 109 chr2R 22785730 intron CG42260 - chr2R 22785784 intron CG42260 - chr2R 22785839 intron CG42260 - chr2R_5_22785001 chr2R_22785001 RAL-509 736 chr2R 22810567 22810573 chr2R 22810683 22810689 5 116 5.0 0.0 2.5 1.4 122 chr2R 22810567 intron stl + chr2R 22810628 intron stl + chr2R 22810689 intron stl + chr2R_5_22810001 chr2R_22810001 RAL-509 737 chr2R 22843025 22843052 chr2R 22844987 22845014 flea 5 1962 6.0 4.0 5.0 0.8 1989 chr2R 22843025 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845014 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-509 738 chr2R 22907402 22907433 chr2R 22907495 22907526 5 93 1.5 2.0 1.8 1.8 124 chr2R 22907402 intron nahoda + chr2R 22907464 intron nahoda + chr2R 22907526 intron nahoda + chr2R_5_22905001 chr2R_22905001 RAL-509 739 chr2R 22925345 22925377 chr2R 22925441 22925473 7 94 3.0 3.0 3.0 1.8 128 chr2R 22925345 5` UTR CG42678 + chr2R 22925409 5` UTR CG42678 + chr2R 22925473 5` UTR CG42678 + chr2R_7_22925001 chr2R_22925001 RAL-509 740 chr2R 22941821 22941851 chr2R 22941900 22941930 5 79 0.5 4.0 2.2 1.6 109 chr2R 22941821 intergenic CG42694 + chr2R 22941876 5` UTR CG42694 + chr2R 22941930 5` UTR CG42694 + chr2R_5_22940001 chr2R_22940001 RAL-509 741 chr2R 22945051 22945082 chr2R 22945165 22945196 10 114 4.0 4.5 4.2 1.9 145 chr2R 22945051 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945196 intergenic CG42694 + chr2R_10_22945001 chr2R_22945001 RAL-509 742 chr2R 22970482 22970506 chr2R 22972709 22972733 9 2227 8.5 23.0 15.8 0.5 2251 chr2R 22970482 intergenic not near genes chr2R 22971608 intergenic not near genes chr2R 22972733 intergenic not near genes chr2R_9_22970001 chr2R_22970001 RAL-509 743 chr2R 23052649 23052689 chr2R 23052725 23052765 6 76 1.5 2.0 1.8 2.1 116 chr2R 23052649 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-509 744 chr2R 23061772 23061788 chr2R 23061866 23061882 5 93 2.0 3.0 2.5 1.4 110 chr2R 23061772 3` UTR l(2)06496 - chr2R 23061827 3` UTR l(2)06496 - chr2R 23061882 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-509 745 chr2R 23119594 23119625 chr2R 23119671 23119702 4 77 1.0 2.0 1.5 1.6 108 chr2R 23119594 intergenic not near genes chr2R 23119648 intergenic not near genes chr2R 23119702 intergenic not near genes chr2R_4_23115001 chr2R_23115001 RAL-509 746 chr2R 23175041 23175063 chr2R 23175114 23175121 6 71 1.0 3.5 2.2 1.9 80 chr2R 23175041 intron CG34371 - chr2R 23175081 intron CG34371 - chr2R 23175121 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-509 747 chr2R 23188558 23188590 chr2R 23188636 23188668 4 78 1.5 1.5 1.5 1.6 110 chr2R 23188558 intron CG34371 - chr2R 23188613 intron CG34371 - chr2R 23188668 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-509 748 chr2R 23219007 23219024 chr2R 23219246 23219262 4 239 1.5 0.0 0.8 2.2 255 chr2R 23219007 intergenic not near genes chr2R 23219134 intergenic not near genes chr2R 23219262 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-509 749 chr2R 23409788 23409817 chr2R 23409882 23409911 8 91 2.0 4.0 3.0 2.0 123 chr2R 23409788 intergenic not near genes chr2R 23409850 intergenic not near genes chr2R 23409911 intergenic not near genes chr2R_8_23405001 chr2R_23405001 RAL-509 750 chr2R 23490873 23490889 chr2R 23490965 23490983 4 94 4.0 3.0 3.5 0.9 110 chr2R 23490873 exon CG43795 + chr2R 23490928 3` UTR CG43795 + chr2R 23490983 3` UTR CG43795 + chr2R_4_23490001 chr2R_23490001 RAL-509 751 chr2R 23493673 23493691 chr2R 23493759 23493777 5 86 3.0 6.5 4.8 0.9 104 chr2R 23493673 intergenic not near genes chr2R 23493725 intergenic not near genes chr2R 23493777 intergenic not near genes chr2R_5_23490001 chr2R_23490001 RAL-509 752 chr2R 23508922 23508944 chr2R 23509039 23509061 11 117 2.5 2.0 2.2 3.4 139 chr2R 23508922 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509061 intergenic not near genes chr2R_11_23505001 chr2R_23505001 RAL-509 753 chr2R 23607040 23607187 chr2R 23607121 23607280 9 82 3.0 3.5 3.2 2.1 240 chr2R 23607040 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607280 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-509 754 chr2R 23619172 23619206 chr2R 23619300 23619334 17 128 2.5 2.5 2.5 4.9 162 chr2R 23619172 intergenic not near genes chr2R 23619253 intergenic not near genes chr2R 23619334 intergenic not near genes chr2R_17_23615001 chr2R_23615001 RAL-509 755 chr2R 23663373 23663404 chr2R 23663449 23663480 8 76 2.5 4.5 3.5 1.8 107 chr2R 23663373 intron Pde8 + chr2R 23663426 intron Pde8 + chr2R 23663480 intron Pde8 + chr2R_8_23660001 chr2R_23660001 RAL-509 756 chr2R 23671431 23671448 chr2R 23671526 23671543 4 94 0.0 5.0 2.5 1.1 112 chr2R 23671431 intron Pde8 + chr2R 23671487 intron Pde8 + chr2R 23671543 intron Pde8 + chr2R_4_23670001 chr2R_23670001 RAL-509 757 chr2R 23914319 23914327 chr2R 23921943 23921944 412 5 7623 1.5 5.0 3.2 1.2 7625 chr2R 23914319 exon kcc + chr2R 23918132 intron kcc + chr2R 23921944 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-509 758 chr2R 23914330 23914332 chr2R 23921923 23921955 412 4 7611 1.5 3.0 2.2 1.2 7625 chr2R 23914330 exon kcc + chr2R 23918142 intron kcc + chr2R 23921955 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-509 759 chr2R 24147079 24147090 chr2R 24154656 24154661 412 5 7576 2.5 5.5 4.0 1.0 7582 chr2R 24147079 intron Dat + chr2R 24150870 intron Dat + chr2R 24154661 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-509 760 chr2R 24210402 24210428 chr2R 24210573 24210596 8 166 0.5 3.5 2.0 2.7 194 chr2R 24210402 intergenic not near genes chr2R 24210499 intergenic not near genes chr2R 24210596 intergenic not near genes chr2R_8_24210001 chr2R_24210001 RAL-509 761 chr2R 24353428 24353459 chr2R 24361788 24361821 roo 12 8361 1.0 5.0 3.0 3.0 8393 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-509 762 chr2R 24430810 24430825 chr2R 24430891 24430906 6 81 2.5 1.0 1.8 2.1 96 chr2R 24430810 intergenic CG15873 - chr2R 24430858 intergenic CG15873 -,Pgam5-2 - chr2R 24430906 intergenic CG15873 -,Pgam5-2 - chr2R_6_24430001 chr2R_24430001 RAL-509 763 chr2R 24458373 24458403 chr2R 24458516 24458549 7 146 3.5 3.5 3.5 1.6 176 chr2R 24458373 intron CG13579 + chr2R 24458461 intron CG13579 + chr2R 24458549 intron CG13579 + chr2R_7_24455001 chr2R_24455001 RAL-509 764 chr2R 24647595 24647618 chr2R 24655151 24655175 412 7 7555 1.0 5.5 3.2 1.7 7580 chr2R 24647595 intergenic not near genes chr2R 24651385 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-509 765 chr2R 24719800 24719825 chr2R 24719909 24719937 4 111 1.5 1.0 1.2 1.8 137 chr2R 24719800 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719937 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-509 766 chr2R 24722364 24722398 chr2R 24722446 24722480 11 82 3.0 1.5 2.2 3.4 116 chr2R 24722364 intron Mid1 - chr2R 24722422 intron Mid1 - chr2R 24722480 intron Mid1 - chr2R_11_24720001 chr2R_24720001 RAL-509 767 chr2R 24727887 24727918 chr2R 24735395 24735412 mdg1 13 7503 1.5 1.5 1.5 5.2 7525 chr2R 24727887 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735412 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-509 768 chr2R 24763613 24763638 chr2R 24765588 24765614 G2 7 1972 1.0 3.0 2.0 2.3 2001 chr2R 24763613 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765614 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-509 769 chr2R 24798408 24798432 chr2R 24798732 24798765 10 329 3.5 4.0 3.8 2.1 357 chr2R 24798408 intron CG12849 + chr2R 24798586 exon CG12849 + chr2R 24798765 intergenic CG3611 +,CG12849 + chr2R_10_24795001 chr2R_24795001 RAL-509 770 chr2R 24861717 24861746 chr2R 24861803 24861827 6 84 3.5 3.0 3.2 1.4 110 chr2R 24861717 intergenic not near genes chr2R 24861772 intergenic not near genes chr2R 24861827 intergenic not near genes chr2R_6_24860001 chr2R_24860001 RAL-509 771 chr2R 24880760 24880778 chr2R 24880829 24880859 6 78 1.0 0.0 0.5 4.0 99 chr2R 24880760 3` UTR CG44247 + chr2R 24880810 3` UTR CG44247 + chr2R 24880859 3` UTR CG44247 + chr2R_6_24880001 chr2R_24880001 RAL-509 772 chr2R 24927845 24927868 chr2R 24927928 24927951 12 83 3.0 4.5 3.8 2.5 106 chr2R 24927845 intron pain - chr2R 24927898 intron pain - chr2R 24927951 intron pain - chr2R_12_24925001 chr2R_24925001 RAL-509 773 chr2R 25022653 25022666 chr2R 25022737 25022750 4 84 2.0 2.5 2.2 1.2 97 chr2R 25022653 intron uzip + chr2R 25022702 intron uzip + chr2R 25022750 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-509 774 chr2R 25141660 25141681 chr2R 25159350 25159371 roo 5 17689 1.5 2.5 2.0 1.7 17711 chr2R 25141660 intergenic not near genes chr2R 25150516 intergenic not near genes chr2R 25159371 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-509 775 chr2R 25253444 25253476 chr2R 25253520 25253552 6 76 3.5 1.5 2.5 1.7 108 chr2R 25253444 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 RAL-509 776 chr3L 29587 29619 chr3L 29973 30004 9 383 1.0 3.0 2.0 3.0 417 chr3L 29587 intergenic not near genes chr3L 29796 intergenic not near genes chr3L 30004 intergenic not near genes chr3L_9_25001 chr3L_25001 RAL-509 777 chr3L 68981 69015 chr3L 69067 69102 13 86 3.0 2.5 2.8 3.4 121 chr3L 68981 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_13_65001 chr3L_65001 RAL-509 778 chr3L 93788 93813 chr3L 93869 93875 4 76 4.5 1.5 3.0 1.0 87 chr3L 93788 intergenic not near genes chr3L 93832 intergenic not near genes chr3L 93875 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-509 779 chr3L 106001 106014 chr3L 106130 106143 5 129 5.5 1.0 3.2 1.2 142 chr3L 106001 intergenic not near genes chr3L 106072 intergenic not near genes chr3L 106143 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-509 780 chr3L 110210 110244 chr3L 119377 119411 roo 12 9167 6.5 4.5 5.5 1.8 9201 chr3L 110210 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_12_110001 chr3L_110001 RAL-509 781 chr3L 296083 296095 chr3L 296391 296414 6 316 1.0 3.0 2.0 2.0 331 chr3L 296083 intron RhoGEF3 + chr3L 296248 intron RhoGEF3 + chr3L 296414 intron RhoGEF3 + chr3L_6_295001 chr3L_295001 RAL-509 782 chr3L 402692 402718 chr3L 409745 409771 297 5 7049 5.0 6.0 5.5 0.8 7079 chr3L 402692 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-509 783 chr3L 421055 421084 chr3L 421151 421180 10 96 4.5 4.0 4.2 1.9 125 chr3L 421055 intergenic not near genes chr3L 421118 intergenic not near genes chr3L 421180 intergenic not near genes chr3L_10_420001 chr3L_420001 RAL-509 784 chr3L 514281 514303 chr3L 514357 514380 6 77 4.5 4.0 4.2 1.2 99 chr3L 514281 intron klar - chr3L 514330 intron klar - chr3L 514380 intron klar - chr3L_6_510001 chr3L_510001 RAL-509 785 chr3L 563971 564003 chr3L 564150 564173 14 177 2.5 5.5 4.0 2.8 202 chr3L 563971 intron hipk + chr3L 564072 intron hipk + chr3L 564173 intron hipk + chr3L_14_560001 chr3L_560001 RAL-509 786 chr3L 642473 642500 chr3L 642564 642591 8 91 5.5 7.5 6.5 1.1 118 chr3L 642473 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642591 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-509 787 chr3L 651387 651419 chr3L 651475 651507 17 87 2.0 1.0 1.5 6.8 120 chr3L 651387 intergenic Gale +,CG3402 - chr3L 651447 intergenic CG3402 -,Gale + chr3L 651507 intergenic CG3402 -,Gale + chr3L_17_650001 chr3L_650001 RAL-509 788 chr3L 705898 705935 chr3L 705994 706031 10 96 3.5 4.0 3.8 2.1 133 chr3L 705898 intergenic CG13895 -,CR44514 + chr3L 705964 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_10_705001 chr3L_705001 RAL-509 789 chr3L 789912 789942 chr3L 790397 790427 roo 6 485 2.0 2.0 2.0 2.0 515 chr3L 789912 intergenic not near genes chr3L 790170 intergenic not near genes chr3L 790427 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-509 790 chr3L 904243 904257 chr3L 904326 904339 6 83 2.5 2.5 2.5 1.7 96 chr3L 904243 intergenic CG13905 + chr3L 904291 intergenic CG13905 + chr3L 904339 intergenic not near genes chr3L_6_900001 chr3L_900001 RAL-509 791 chr3L 925175 925206 chr3L 932601 932632 mdg1 14 7426 5.0 4.0 4.5 2.5 7457 chr3L 925175 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_14_925001 chr3L_925001 RAL-509 792 chr3L 939768 939802 chr3L 940889 940922 jockey 15 1120 5.0 3.5 4.2 2.9 1154 chr3L 939768 intron Glut1 + chr3L 940345 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_15_940001 chr3L_940001 RAL-509 793 chr3L 1016433 1016444 chr3L 1017478 1017489 6 1044 8.0 0.0 4.0 1.2 1056 chr3L 1016433 intron trio - chr3L 1016961 intron trio - chr3L 1017489 intron trio - chr3L_6_1015001 chr3L_1015001 RAL-509 794 chr3L 1021376 1021400 chr3L 1021456 1021479 14 79 5.0 4.0 4.5 2.5 103 chr3L 1021376 intron trio - chr3L 1021428 intron trio - chr3L 1021479 intron trio - chr3L_14_1020001 chr3L_1020001 RAL-509 795 chr3L 1028821 1028831 chr3L 1028907 1028917 4 86 3.0 1.5 2.2 1.2 96 chr3L 1028821 intron trio - chr3L 1028869 intron trio - chr3L 1028917 intron trio - chr3L_4_1025001 chr3L_1025001 RAL-509 796 chr3L 1031578 1031608 chr3L 1031654 1031684 11 72 2.5 2.5 2.5 3.1 106 chr3L 1031578 intron trio - chr3L 1031631 intron trio - chr3L 1031684 intron trio - chr3L_11_1030001 chr3L_1030001 RAL-509 797 chr3L 1040551 1040580 chr3L 1040632 1040664 15 84 2.5 3.0 2.8 3.9 113 chr3L 1040551 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040664 intron bab1 - chr3L_15_1040001 chr3L_1040001 RAL-509 798 chr3L 1115797 1115828 chr3L 1115996 1116022 9 198 1.5 5.0 3.2 2.1 225 chr3L 1115797 intergenic not near genes chr3L 1115910 intergenic not near genes chr3L 1116022 intergenic not near genes chr3L_9_1115001 chr3L_1115001 RAL-509 799 chr3L 1154132 1154154 chr3L 1163282 1163304 roo 8 9150 2.0 1.0 1.5 3.2 9172 chr3L 1154132 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163304 intron bab2 - chr3L_8_1155001 chr3L_1155001 RAL-509 800 chr3L 1175906 1175927 chr3L 1175989 1176000 6 80 4.0 2.5 3.2 1.4 94 chr3L 1175906 intron bab2 - chr3L 1175953 intron bab2 - chr3L 1176000 intron bab2 - chr3L_6_1175001 chr3L_1175001 RAL-509 801 chr3L 1189625 1189658 chr3L 1189710 1189743 11 86 1.0 2.0 1.5 4.4 118 chr3L 1189625 5` UTR CG13912 + chr3L 1189684 5` UTR CG13912 + chr3L 1189743 5` UTR CG13912 + chr3L_11_1185001 chr3L_1185001 RAL-509 802 chr3L 1219600 1219625 chr3L 1227332 1227355 412 7 7729 2.5 6.0 4.2 1.3 7755 chr3L 1219600 intron mwh + chr3L 1223478 intron mwh + chr3L 1227355 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-509 803 chr3L 1268151 1268168 chr3L 1268338 1268352 6 186 4.5 0.0 2.2 1.9 201 chr3L 1268151 intron CG9134 + chr3L 1268252 intron CG9134 + chr3L 1268352 intron CG9134 + chr3L_6_1265001 chr3L_1265001 RAL-509 804 chr3L 1347162 1347186 chr3L 1347242 1347269 9 82 1.5 2.5 2.0 3.0 107 chr3L 1347162 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347269 intron Ptp61F - chr3L_9_1345001 chr3L_1345001 RAL-509 805 chr3L 1374431 1374445 chr3L 1374508 1374522 6 76 6.5 3.0 4.8 1.0 91 chr3L 1374431 intron,intron Ptp61F -,ru + chr3L 1374476 intron,intron Ptp61F -,ru + chr3L 1374522 intron,intron Ptp61F -,ru + chr3L_6_1370001 chr3L_1370001 RAL-509 806 chr3L 1385177 1385193 chr3L 1385264 1385280 8 87 3.5 3.5 3.5 1.8 103 chr3L 1385177 intron,intron Ptp61F -,ru + chr3L 1385228 intron,intron Ptp61F -,ru + chr3L 1385280 intron,intron Ptp61F -,ru + chr3L_8_1385001 chr3L_1385001 RAL-509 807 chr3L 1396739 1396757 chr3L 1396823 1396841 7 81 3.5 5.5 4.5 1.3 102 chr3L 1396739 intron Ptp61F - chr3L 1396790 intron Ptp61F - chr3L 1396841 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-509 808 chr3L 1415779 1415796 chr3L 1415861 1415864 6 80 1.5 6.0 3.8 1.2 85 chr3L 1415779 intron Ptp61F - chr3L 1415822 intron Ptp61F - chr3L 1415864 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-509 809 chr3L 1506003 1506025 chr3L 1513600 1513622 17.6 7 7595 4.0 2.0 3.0 1.8 7619 chr3L 1506003 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513622 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-509 810 chr3L 1525365 1525399 chr3L 1525528 1525562 10 162 1.0 3.5 2.2 3.1 197 chr3L 1525365 exon CG12090 - chr3L 1525464 intron CG12090 - chr3L 1525562 intron CG12090 - chr3L_10_1525001 chr3L_1525001 RAL-509 811 chr3L 1639215 1639242 chr3L 1639395 1639423 7 180 2.5 3.5 3.0 1.8 208 chr3L 1639215 5` UTR metl - chr3L 1639319 intergenic metl -,Bgb + chr3L 1639423 intergenic metl -,Bgb + chr3L_7_1635001 chr3L_1635001 RAL-509 812 chr3L 1922456 1922472 chr3L 1922532 1922542 4 73 6.0 6.0 6.0 0.6 86 chr3L 1922456 intron Dbx + chr3L 1922499 intron Dbx + chr3L 1922542 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-509 813 chr3L 1991119 1991152 chr3L 1991197 1991229 8 77 1.0 3.5 2.2 2.5 110 chr3L 1991119 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991229 intergenic not near genes chr3L_8_1990001 chr3L_1990001 RAL-509 814 chr3L 2168770 2168806 chr3L 2168861 2168897 8 89 3.0 3.5 3.2 1.9 127 chr3L 2168770 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-509 815 chr3L 2302566 2302601 chr3L 2302653 2302687 8 87 0.0 1.5 0.8 4.4 121 chr3L 2302566 intergenic not near genes chr3L 2302626 intergenic not near genes chr3L 2302687 intergenic not near genes chr3L_8_2300001 chr3L_2300001 RAL-509 816 chr3L 2447504 2447531 chr3L 2456660 2456687 roo 5 9156 2.5 2.5 2.5 1.4 9183 chr3L 2447504 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-509 817 chr3L 2533645 2533679 chr3L 2533727 2533760 8 80 2.5 3.5 3.0 2.0 115 chr3L 2533645 intron Spn - chr3L 2533702 intron Spn - chr3L 2533760 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-509 818 chr3L 2534614 2534644 chr3L 2534694 2534727 10 82 0.0 5.0 2.5 2.9 113 chr3L 2534614 intron Spn - chr3L 2534670 intron Spn - chr3L 2534727 exon Spn - chr3L_10_2530001 chr3L_2530001 RAL-509 819 chr3L 2561528 2561555 chr3L 2561605 2561632 8 77 1.0 1.5 1.2 3.6 104 chr3L 2561528 intron msn - chr3L 2561580 intron msn - chr3L 2561632 intron msn - chr3L_8_2560001 chr3L_2560001 RAL-509 820 chr3L 2687277 2687303 chr3L 2687369 2687395 11 87 3.0 3.0 3.0 2.8 118 chr3L 2687277 intron Fife - chr3L 2687336 intron Fife - chr3L 2687395 intron Fife - chr3L_11_2685001 chr3L_2685001 RAL-509 821 chr3L 2691997 2692034 chr3L 2692081 2692117 7 84 1.0 1.0 1.0 3.5 120 chr3L 2691997 intron Fife - chr3L 2692057 intron Fife - chr3L 2692117 intron Fife - chr3L_7_2690001 chr3L_2690001 RAL-509 822 chr3L 2751449 2751469 chr3L 2755744 2755764 F-element 4 4295 3.0 4.5 3.8 0.8 4315 chr3L 2751449 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755764 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-509 823 chr3L 2854485 2854500 chr3L 2854561 2854573 5 76 4.5 1.5 3.0 1.2 88 chr3L 2854485 intron CG43444 - chr3L 2854529 intron CG43444 - chr3L 2854573 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-509 824 chr3L 2927840 2927859 chr3L 2936117 2936136 Tirant 9 8276 5.5 2.0 3.8 1.9 8296 chr3L 2927840 intron Shab + chr3L 2931988 intron Shab + chr3L 2936136 intron Shab + chr3L_9_2930001 chr3L_2930001 RAL-509 825 chr3L 2985836 2985859 chr3L 2985986 2986009 4 146 0.0 2.5 1.2 1.8 173 chr3L 2985836 intergenic not near genes chr3L 2985922 intergenic not near genes chr3L 2986009 intergenic not near genes chr3L_4_2985001 chr3L_2985001 RAL-509 826 chr3L 2987709 2987731 chr3L 2987791 2987813 8 82 3.0 0.0 1.5 3.2 104 chr3L 2987709 intergenic not near genes chr3L 2987761 intergenic not near genes chr3L 2987813 intergenic not near genes chr3L_8_2985001 chr3L_2985001 RAL-509 827 chr3L 2988903 2988926 chr3L 2988973 2989003 8 76 4.0 2.0 3.0 2.0 100 chr3L 2988903 intergenic not near genes chr3L 2988953 intergenic not near genes chr3L 2989003 intergenic not near genes chr3L_8_2985001 chr3L_2985001 RAL-509 828 chr3L 3281443 3281473 chr3L 3281939 3281964 Doc 7 494 2.5 5.5 4.0 1.4 521 chr3L 3281443 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281964 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-509 829 chr3L 3310298 3310326 chr3L 3310372 3310404 10 78 2.0 1.0 1.5 4.0 106 chr3L 3310298 intron ZnT63C + chr3L 3310351 intron ZnT63C + chr3L 3310404 intron ZnT63C + chr3L_10_3310001 chr3L_3310001 RAL-509 830 chr3L 3475086 3475111 chr3L 3475528 3475555 jockey 8 444 1.5 4.0 2.8 2.1 469 chr3L 3475086 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-509 831 chr3L 3573172 3573192 chr3L 3573255 3573275 5 83 5.0 3.5 4.2 1.0 103 chr3L 3573172 intron Eip63E + chr3L 3573224 intron Eip63E + chr3L 3573275 intron Eip63E + chr3L_5_3570001 chr3L_3570001 RAL-509 832 chr3L 3585597 3585624 chr3L 3585689 3585716 4 92 0.0 4.0 2.0 1.3 119 chr3L 3585597 intron Eip63E + chr3L 3585656 intron Eip63E + chr3L 3585716 intron Eip63E + chr3L_4_3585001 chr3L_3585001 RAL-509 833 chr3L 3601296 3601332 chr3L 3606607 3606643 copia 10 5310 2.5 2.0 2.2 3.1 5347 chr3L 3601296 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_10_3600001 chr3L_3600001 RAL-509 834 chr3L 3622312 3622341 chr3L 3622391 3622420 6 79 3.5 1.0 2.2 1.9 108 chr3L 3622312 intergenic not near genes chr3L 3622366 intergenic not near genes chr3L 3622420 intergenic not near genes chr3L_6_3620001 chr3L_3620001 RAL-509 835 chr3L 3707882 3707912 chr3L 3708490 3708520 6 608 18.5 18.5 18.5 0.3 638 chr3L 3707882 intergenic not near genes chr3L 3708201 intergenic CR45675 + chr3L 3708520 intergenic CR45675 + chr3L_6_3705001 chr3L_3705001 RAL-509 836 chr3L 3755376 3755394 chr3L 3755529 3755547 6 153 3.5 2.5 3.0 1.5 171 chr3L 3755376 intron CG32264 - chr3L 3755462 intron CG32264 - chr3L 3755547 intron CG32264 - chr3L_6_3755001 chr3L_3755001 RAL-509 837 chr3L 3758239 3758256 chr3L 3758322 3758340 10 84 0.0 6.5 3.2 2.4 101 chr3L 3758239 intron CG32264 - chr3L 3758290 intron CG32264 - chr3L 3758340 intron CG32264 - chr3L_10_3755001 chr3L_3755001 RAL-509 838 chr3L 3761113 3761133 chr3L 3761199 3761219 5 86 3.0 4.5 3.8 1.0 106 chr3L 3761113 intron CG32264 - chr3L 3761166 intron CG32264 - chr3L 3761219 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-509 839 chr3L 3798055 3798072 chr3L 3798135 3798150 7 80 1.5 4.0 2.8 1.8 95 chr3L 3798055 intron CG32264 - chr3L 3798102 intron CG32264 - chr3L 3798150 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-509 840 chr3L 3968045 3968059 chr3L 3968124 3968138 4 79 0.5 0.5 0.5 2.7 93 chr3L 3968045 intergenic not near genes chr3L 3968092 intergenic not near genes chr3L 3968138 intergenic not near genes chr3L_4_3965001 chr3L_3965001 RAL-509 841 chr3L 4078364 4078401 chr3L 4078549 4078585 5 180 1.5 0.0 0.8 2.8 221 chr3L 4078364 intron Gad1 - chr3L 4078474 intron Gad1 - chr3L 4078585 intron Gad1 - chr3L_5_4075001 chr3L_4075001 RAL-509 842 chr3L 4078843 4078852 chr3L 4078920 4078929 6 77 0.0 3.5 1.8 2.1 86 chr3L 4078843 intron Gad1 - chr3L 4078886 intron Gad1 - chr3L 4078929 exon Gad1 - chr3L_6_4075001 chr3L_4075001 RAL-509 843 chr3L 4146826 4146841 chr3L 4146908 4146923 4 82 0.0 3.0 1.5 1.6 97 chr3L 4146826 intergenic not near genes chr3L 4146874 intergenic not near genes chr3L 4146923 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-509 844 chr3L 4195156 4195173 chr3L 4195244 4195277 5 99 3.0 5.0 4.0 1.0 121 chr3L 4195156 exon CG43367 + chr3L 4195216 intron CG43367 + chr3L 4195277 intron CG43367 + chr3L_5_4195001 chr3L_4195001 RAL-509 845 chr3L 4343506 4343515 chr3L 4343589 4343598 5 83 0.0 4.0 2.0 1.7 92 chr3L 4343506 intron Cip4 - chr3L 4343552 intron Cip4 - chr3L 4343598 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-509 846 chr3L 4347829 4347855 chr3L 4347915 4347941 9 85 2.0 4.0 3.0 2.2 112 chr3L 4347829 intron Cip4 - chr3L 4347885 intron Cip4 - chr3L 4347941 intron Cip4 - chr3L_9_4345001 chr3L_4345001 RAL-509 847 chr3L 4385642 4385673 chr3L 4385735 4385765 9 92 0.5 4.0 2.2 2.8 123 chr3L 4385642 intron slow + chr3L 4385704 intron slow + chr3L 4385765 intron slow + chr3L_9_4385001 chr3L_4385001 RAL-509 848 chr3L 4487916 4487934 chr3L 4488193 4488211 8 276 13.0 12.0 12.5 0.6 295 chr3L 4487916 intron CG13722 - chr3L 4488064 intron CG13722 - chr3L 4488211 intron CG13722 - chr3L_8_4485001 chr3L_4485001 RAL-509 849 chr3L 4488410 4488428 chr3L 4488486 4488504 6 76 11.5 4.0 7.8 0.7 94 chr3L 4488410 intron CG13722 - chr3L 4488457 intron CG13722 - chr3L 4488504 intron CG13722 - chr3L_6_4485001 chr3L_4485001 RAL-509 850 chr3L 4487908 4487929 chr3L 4488445 4488466 5 537 13.0 11.5 12.2 0.4 558 chr3L 4487908 intron CG13722 - chr3L 4488187 intron CG13722 - chr3L 4488466 intron CG13722 - chr3L_5_4485001 chr3L_4485001 RAL-509 851 chr3L 4519424 4519450 chr3L 4519501 4519526 11 76 3.0 3.5 3.2 2.6 102 chr3L 4519424 intron Tie - chr3L 4519475 intron Tie - chr3L 4519526 intron Tie - chr3L_11_4515001 chr3L_4515001 RAL-509 852 chr3L 4652572 4652599 chr3L 4652655 4652682 6 83 0.5 3.0 1.8 2.1 110 chr3L 4652572 intron axo - chr3L 4652627 intron axo - chr3L 4652682 intron axo - chr3L_6_4650001 chr3L_4650001 RAL-509 853 chr3L 4784980 4784991 chr3L 4785189 4785200 4 209 1.0 7.0 4.0 0.8 220 chr3L 4784980 intron RhoGEF64C + chr3L 4785090 intron RhoGEF64C + chr3L 4785200 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-509 854 chr3L 4858311 4858327 chr3L 4858398 4858417 6 89 5.0 6.5 5.8 0.9 106 chr3L 4858311 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858417 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-509 855 chr3L 4901135 4901154 chr3L 4907324 4907344 diver 10 6189 2.0 1.5 1.8 3.6 6209 chr3L 4901135 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-509 856 chr3L 4907978 4907984 chr3L 4908053 4908057 5 75 1.5 3.5 2.5 1.4 79 chr3L 4907978 intergenic not near genes chr3L 4908018 intergenic not near genes chr3L 4908057 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-509 857 chr3L 4967144 4967173 chr3L 4967251 4967266 5 104 3.5 3.5 3.5 1.1 122 chr3L 4967144 intron Con - chr3L 4967205 intron Con - chr3L 4967266 intron Con - chr3L_5_4965001 chr3L_4965001 RAL-509 858 chr3L 4991389 4991425 chr3L 4991513 4991547 14 122 6.5 4.0 5.2 2.3 158 chr3L 4991389 intron Con - chr3L 4991468 intron Con - chr3L 4991547 intron Con - chr3L_14_4990001 chr3L_4990001 RAL-509 859 chr3L 5164646 5164668 chr3L 5164722 5164744 7 76 1.5 1.0 1.2 3.2 98 chr3L 5164646 intron shep - chr3L 5164695 intron shep - chr3L 5164744 intron shep - chr3L_7_5160001 chr3L_5160001 RAL-509 860 chr3L 5212240 5212260 chr3L 5212323 5212343 4 83 7.0 3.0 5.0 0.7 103 chr3L 5212240 intron shep - chr3L 5212292 intron shep - chr3L 5212343 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-509 861 chr3L 5251860 5251871 chr3L 5251939 5251950 4 79 0.0 1.5 0.8 2.2 90 chr3L 5251860 intron shep - chr3L 5251905 intron shep - chr3L 5251950 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-509 862 chr3L 5256697 5256721 chr3L 5256783 5256808 8 87 6.0 3.0 4.5 1.5 111 chr3L 5256697 intron shep - chr3L 5256752 intron shep - chr3L 5256808 intron shep - chr3L_8_5255001 chr3L_5255001 RAL-509 863 chr3L 5312140 5312155 chr3L 5312219 5312236 4 80 0.5 0.0 0.2 3.3 96 chr3L 5312140 intergenic not near genes chr3L 5312188 intergenic not near genes chr3L 5312236 intergenic not near genes chr3L_4_5310001 chr3L_5310001 RAL-509 864 chr3L 5482939 5482977 chr3L 5483262 5483266 4 314 1.0 25.5 13.2 0.3 327 chr3L 5482939 exon CG4835 + chr3L 5483102 exon CG4835 + chr3L 5483266 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-509 865 chr3L 5498414 5498421 chr3L 5498491 5498498 5 77 0.0 3.0 1.5 2.0 84 chr3L 5498414 exon blanks - chr3L 5498456 exon blanks - chr3L 5498498 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-509 866 chr3L 5520350 5520376 chr3L 5520457 5520483 5 107 0.5 2.5 1.5 2.0 133 chr3L 5520350 intron Lkr - chr3L 5520416 intron Lkr - chr3L 5520483 intron Lkr - chr3L_5_5520001 chr3L_5520001 RAL-509 867 chr3L 5638444 5638460 chr3L 5638582 5638608 11 147 1.5 1.5 1.5 4.4 164 chr3L 5638444 intron Blimp-1 + chr3L 5638526 intron Blimp-1 + chr3L 5638608 intron Blimp-1 + chr3L_11_5635001 chr3L_5635001 RAL-509 868 chr3L 5677194 5677204 chr3L 5677270 5677280 4 76 0.0 4.0 2.0 1.3 86 chr3L 5677194 intron sif + chr3L 5677237 intron sif + chr3L 5677280 intron sif + chr3L_4_5675001 chr3L_5675001 RAL-509 869 chr3L 5690351 5690364 chr3L 5690445 5690458 7 94 3.5 0.5 2.0 2.3 107 chr3L 5690351 intron sif + chr3L 5690404 intron sif + chr3L 5690458 intron sif + chr3L_7_5690001 chr3L_5690001 RAL-509 870 chr3L 5727181 5727194 chr3L 5727654 5727658 6 470 3.0 4.0 3.5 1.3 477 chr3L 5727181 intron sif + chr3L 5727420 intron sif + chr3L 5727658 intron sif + chr3L_6_5725001 chr3L_5725001 RAL-509 871 chr3L 5826148 5826162 chr3L 5826231 5826246 5 84 3.5 8.0 5.8 0.7 98 chr3L 5826148 intron vn - chr3L 5826197 intron vn - chr3L 5826246 intron vn - chr3L_5_5825001 chr3L_5825001 RAL-509 872 chr3L 5910033 5910063 chr3L 5910274 5910304 pogo 5 241 1.0 3.0 2.0 1.7 271 chr3L 5910033 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-509 873 chr3L 5926319 5926344 chr3L 5926506 5926534 BS 15 185 4.0 2.5 3.2 3.6 215 chr3L 5926319 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926534 intron Vap-33B + chr3L_15_5925001 chr3L_5925001 RAL-509 874 chr3L 6001684 6001716 chr3L 6004384 6004414 jockey 10 2700 5.0 2.5 3.8 2.1 2730 chr3L 6001684 intron PVRAP + chr3L 6003049 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_10_6000001 chr3L_6000001 RAL-509 875 chr3L 6040365 6040381 chr3L 6042721 6042736 Doc 4 2356 3.0 1.0 2.0 1.3 2371 chr3L 6040365 intergenic Jon65Aiv + chr3L 6041550 intergenic not near genes chr3L 6042736 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-509 876 chr3L 6052656 6052666 chr3L 6052740 6052750 4 83 4.0 4.0 4.0 0.8 94 chr3L 6052656 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-509 877 chr3L 6116700 6116723 chr3L 6116784 6116807 4 82 2.5 3.0 2.8 1.1 107 chr3L 6116700 intron Ets65A + chr3L 6116754 intron Ets65A + chr3L 6116807 intron Ets65A + chr3L_4_6115001 chr3L_6115001 RAL-509 878 chr3L 6220916 6220944 chr3L 6230067 6230094 roo 16 9151 5.5 7.0 6.2 2.2 9178 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230094 intergenic not near genes chr3L_16_6225001 chr3L_6225001 RAL-509 879 chr3L 6293767 6293798 chr3L 6293849 6293880 10 82 1.5 2.5 2.0 3.3 113 chr3L 6293767 intergenic not near genes chr3L 6293824 intergenic not near genes chr3L 6293880 intergenic not near genes chr3L_10_6290001 chr3L_6290001 RAL-509 880 chr3L 6372439 6372451 chr3L 6372590 6372602 6 151 2.0 0.0 1.0 3.0 163 chr3L 6372439 intergenic not near genes chr3L 6372520 intergenic not near genes chr3L 6372602 intergenic not near genes chr3L_6_6370001 chr3L_6370001 RAL-509 881 chr3L 6405658 6405680 chr3L 6432122 6432144 roo 6 26464 2.0 1.5 1.8 2.1 26486 chr3L 6405658 intron CG42747 + chr3L 6418901 intron CG42747 + chr3L 6432144 intron CG42747 + chr3L_6_6415001 chr3L_6415001 RAL-509 882 chr3L 6442148 6442185 chr3L 6442362 6442399 9 215 25.0 26.5 25.8 0.3 251 chr3L 6442148 intron CG42747 + chr3L 6442274 intron CG42747 + chr3L 6442399 intron CG42747 + chr3L_9_6440001 chr3L_6440001 RAL-509 883 chr3L 6652079 6652110 chr3L 6652157 6652188 12 77 2.5 3.5 3.0 3.0 109 chr3L 6652079 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652188 intergenic not near genes chr3L_12_6650001 chr3L_6650001 RAL-509 884 chr3L 6655738 6655759 chr3L 6656112 6656134 9 375 3.0 4.5 3.8 1.9 396 chr3L 6655738 intergenic not near genes chr3L 6655936 intergenic not near genes chr3L 6656134 intergenic not near genes chr3L_9_6655001 chr3L_6655001 RAL-509 885 chr3L 6759538 6759557 chr3L 6759641 6759660 7 103 1.5 3.0 2.2 2.2 122 chr3L 6759538 intron CG32392 - chr3L 6759599 intron CG32392 - chr3L 6759660 intron CG32392 - chr3L_7_6755001 chr3L_6755001 RAL-509 886 chr3L 6855932 6855947 chr3L 6860716 6860731 Doc 6 4782 3.0 3.0 3.0 1.5 4799 chr3L 6855932 intergenic not near genes chr3L 6858332 intergenic not near genes chr3L 6860731 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-509 887 chr3L 6887524 6887540 chr3L 6895016 6895032 roo 5 7492 2.5 5.5 4.0 1.0 7508 chr3L 6887524 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895032 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-509 888 chr3L 6974508 6974525 chr3L 6974609 6974626 10 101 0.0 7.0 3.5 2.2 118 chr3L 6974508 intron Galphai - chr3L 6974567 intron Galphai - chr3L 6974626 intron Galphai - chr3L_10_6970001 chr3L_6970001 RAL-509 889 chr3L 7091532 7091552 chr3L 7091608 7091628 4 75 5.5 1.0 3.2 1.0 96 chr3L 7091532 intergenic not near genes chr3L 7091580 intergenic not near genes chr3L 7091628 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-509 890 chr3L 7138195 7138215 chr3L 7138463 7138485 5 269 2.5 4.5 3.5 1.1 290 chr3L 7138195 intron melt + chr3L 7138340 intron melt + chr3L 7138485 intron melt + chr3L_5_7135001 chr3L_7135001 RAL-509 891 chr3L 7203011 7203049 chr3L 7203640 7203678 8 629 1.5 1.0 1.2 3.6 667 chr3L 7203011 intergenic not near genes chr3L 7203344 intergenic not near genes chr3L 7203678 intergenic not near genes chr3L_8_7200001 chr3L_7200001 RAL-509 892 chr3L 7285462 7285478 chr3L 7285540 7285554 5 78 1.5 4.5 3.0 1.2 92 chr3L 7285462 intron unc-13-4A - chr3L 7285508 intron unc-13-4A - chr3L 7285554 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-509 893 chr3L 7318184 7318210 chr3L 7318278 7318305 8 94 4.0 2.5 3.2 1.9 121 chr3L 7318184 intergenic not near genes chr3L 7318244 intergenic not near genes chr3L 7318305 intergenic not near genes chr3L_8_7315001 chr3L_7315001 RAL-509 894 chr3L 7403612 7403640 chr3L 7403691 7403717 5 77 1.5 2.0 1.8 1.8 105 chr3L 7403612 exon CG8560 - chr3L 7403664 intron CG8560 - chr3L 7403717 intron CG8560 - chr3L_5_7400001 chr3L_7400001 RAL-509 895 chr3L 7444024 7444048 chr3L 7444122 7444146 4 98 5.0 0.0 2.5 1.1 122 chr3L 7444024 intron CG42458 + chr3L 7444085 intron CG42458 + chr3L 7444146 intron CG42458 + chr3L_4_7440001 chr3L_7440001 RAL-509 896 chr3L 7450688 7450719 chr3L 7450771 7450802 9 82 1.0 2.0 1.5 3.6 114 chr3L 7450688 intron CG42458 + chr3L 7450745 intron CG42458 + chr3L 7450802 intron CG42458 + chr3L_9_7450001 chr3L_7450001 RAL-509 897 chr3L 7793710 7793742 chr3L 7800762 7800794 297 7 7052 4.0 2.5 3.2 1.7 7084 chr3L 7793710 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-509 898 chr3L 7803125 7803144 chr3L 7803202 7803221 4 77 4.0 0.0 2.0 1.3 96 chr3L 7803125 intron CG32369 - chr3L 7803173 intron CG32369 - chr3L 7803221 intron CG32369 - chr3L_4_7800001 chr3L_7800001 RAL-509 899 chr3L 7817070 7817088 chr3L 7817203 7817221 5 133 1.0 0.0 0.5 3.3 151 chr3L 7817070 intron Pdp1 - chr3L 7817146 intron Pdp1 - chr3L 7817221 intron Pdp1 - chr3L_5_7815001 chr3L_7815001 RAL-509 900 chr3L 7884928 7884949 chr3L 7885000 7885020 7 75 4.0 5.0 4.5 1.3 92 chr3L 7884928 intron CG32365 + chr3L 7884974 intron CG32365 + chr3L 7885020 intron CG32365 + chr3L_7_7880001 chr3L_7880001 RAL-509 901 chr3L 7886521 7886544 chr3L 7889035 7889062 Stalker4 7 2517 2.5 1.5 2.0 2.3 2541 chr3L 7886521 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-509 902 chr3L 7985363 7985395 chr3L 7987690 7987723 NOF 14 2328 6.5 3.5 5.0 2.3 2360 chr3L 7985363 intron nmo + chr3L 7986543 intron nmo + chr3L 7987723 intron nmo + chr3L_14_7985001 chr3L_7985001 RAL-509 903 chr3L 8062855 8062963 chr3L 8062934 8063098 5 101 1.5 1.5 1.5 2.0 243 chr3L 8062855 intergenic not near genes chr3L 8062976 intergenic not near genes chr3L 8063098 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-509 904 chr3L 8203547 8203569 chr3L 8203624 8203627 4 66 5.0 4.0 4.5 0.7 80 chr3L 8203547 intergenic CG13679 + chr3L 8203587 intergenic CG13679 + chr3L 8203627 intergenic CG13679 + chr3L_4_8200001 chr3L_8200001 RAL-509 905 chr3L 8226720 8226745 chr3L 8226819 8226844 7 99 1.5 0.0 0.8 3.9 124 chr3L 8226720 intergenic not near genes chr3L 8226782 intergenic not near genes chr3L 8226844 intergenic not near genes chr3L_7_8225001 chr3L_8225001 RAL-509 906 chr3L 8295789 8295824 chr3L 8295947 8295982 15 158 3.5 3.0 3.2 3.6 193 chr3L 8295789 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295982 intergenic not near genes chr3L_15_8295001 chr3L_8295001 RAL-509 907 chr3L 8498305 8498329 chr3L 8505772 8505796 blood 6 7467 5.5 4.0 4.8 1.0 7491 chr3L 8498305 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505796 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-509 908 chr3L 8643576 8643601 chr3L 8643652 8643677 8 76 2.0 3.0 2.5 2.3 101 chr3L 8643576 3` UTR Cpr66D + chr3L 8643626 intergenic Cpr66D + chr3L 8643677 intergenic Cpr66D + chr3L_8_8640001 chr3L_8640001 RAL-509 909 chr3L 8682609 8682641 chr3L 8682696 8682728 15 87 3.5 1.0 2.2 4.7 119 chr3L 8682609 intergenic not near genes chr3L 8682668 intergenic not near genes chr3L 8682728 intergenic not near genes chr3L_15_8680001 chr3L_8680001 RAL-509 910 chr3L 8752415 8752417 chr3L 8752603 8752603 4 188 3.0 4.5 3.8 0.8 188 chr3L 8752415 intergenic not near genes chr3L 8752509 intergenic not near genes chr3L 8752603 intergenic not near genes chr3L_4_8750001 chr3L_8750001 RAL-509 911 chr3L 8791273 8791300 chr3L 8796693 8796720 I-element 7 5420 5.5 4.5 5.0 1.2 5447 chr3L 8791273 exon Fhos + chr3L 8793996 intron Fhos + chr3L 8796720 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-509 912 chr3L 8844932 8844963 chr3L 8845087 8845118 9 155 1.5 2.5 2.0 3.0 186 chr3L 8844932 intron dally + chr3L 8845025 intron dally + chr3L 8845118 intron dally + chr3L_9_8845001 chr3L_8845001 RAL-509 913 chr3L 8849207 8849244 chr3L 8849287 8849324 11 79 2.5 0.0 1.2 5.0 117 chr3L 8849207 intron dally + chr3L 8849266 intron dally + chr3L 8849324 intron dally + chr3L_11_8845001 chr3L_8845001 RAL-509 914 chr3L 8884409 8884426 chr3L 8884606 8884624 5 198 1.5 0.0 0.8 2.8 215 chr3L 8884409 intron dally + chr3L 8884516 intron dally + chr3L 8884624 intron dally + chr3L_5_8880001 chr3L_8880001 RAL-509 915 chr3L 8928268 8928279 chr3L 8928344 8928355 4 76 5.0 2.5 3.8 0.8 87 chr3L 8928268 intron Tsp66E + chr3L 8928312 intron Tsp66E + chr3L 8928355 intron Tsp66E + chr3L_4_8925001 chr3L_8925001 RAL-509 916 chr3L 8950568 8950582 chr3L 8950662 8950676 5 94 4.0 5.5 4.8 0.9 108 chr3L 8950568 intron,intron CG43783 -,orb2 - chr3L 8950622 intron,intron CG43783 -,orb2 - chr3L 8950676 intron,intron CG43783 -,orb2 - chr3L_5_8950001 chr3L_8950001 RAL-509 917 chr3L 9003944 9003973 chr3L 9004029 9004058 5 85 3.0 0.5 1.8 1.8 114 chr3L 9003944 intergenic not near genes chr3L 9004001 intergenic not near genes chr3L 9004058 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-509 918 chr3L 9009962 9009972 chr3L 9010066 9010076 5 104 0.5 2.5 1.5 2.0 114 chr3L 9009962 intergenic CG5194 - chr3L 9010019 intergenic CG5194 - chr3L 9010076 intergenic CG5194 - chr3L_5_9010001 chr3L_9010001 RAL-509 919 chr3L 9024515 9024532 chr3L 9024595 9024612 7 80 1.5 4.0 2.8 1.8 97 chr3L 9024515 intergenic not near genes chr3L 9024564 intergenic not near genes chr3L 9024612 intergenic not near genes chr3L_7_9020001 chr3L_9020001 RAL-509 920 chr3L 9076926 9076955 chr3L 9084486 9084515 412 16 7560 6.5 5.0 5.8 2.4 7589 chr3L 9076926 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084515 exon Tequila + chr3L_16_9080001 chr3L_9080001 RAL-509 921 chr3L 9102436 9102465 chr3L 9102533 9102562 11 97 3.5 2.5 3.0 2.8 126 chr3L 9102436 3` UTR bol - chr3L 9102499 3` UTR bol - chr3L 9102562 3` UTR bol - chr3L_11_9100001 chr3L_9100001 RAL-509 922 chr3L 9164711 9164722 chr3L 9166178 9166189 hobo 5 1467 5.0 1.0 3.0 1.2 1478 chr3L 9164711 intron Rdl - chr3L 9165450 intron Rdl - chr3L 9166189 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-509 923 chr3L 9219243 9219275 chr3L 9219914 9219947 jockey 11 670 6.0 3.0 4.5 2.0 704 chr3L 9219243 intergenic not near genes chr3L 9219595 intergenic not near genes chr3L 9219947 intergenic not near genes chr3L_11_9215001 chr3L_9215001 RAL-509 924 chr3L 9291845 9291864 chr3L 9293576 9293589 5 1731 9.0 16.5 12.8 0.4 1744 chr3L 9291845 intergenic not near genes chr3L 9292717 intergenic not near genes chr3L 9293589 intergenic not near genes chr3L_5_9290001 chr3L_9290001 RAL-509 925 chr3L 9294077 9294113 chr3L 9294156 9294192 11 79 22.0 24.5 23.2 0.5 115 chr3L 9294077 intergenic not near genes chr3L 9294134 intergenic not near genes chr3L 9294192 intergenic not near genes chr3L_11_9290001 chr3L_9290001 RAL-509 926 chr3L 9291778 9291791 chr3L 9297398 9297410 5 5621 14.0 20.5 17.2 0.3 5632 chr3L 9291778 intergenic not near genes chr3L 9294594 intergenic not near genes chr3L 9297410 intergenic not near genes chr3L_5_9290001 chr3L_9290001 RAL-509 927 chr3L 9390847 9390870 chr3L 9390977 9391000 7 129 1.5 0.5 1.0 3.5 153 chr3L 9390847 intron CG4080 - chr3L 9390924 intron CG4080 - chr3L 9391000 intron CG4080 - chr3L_7_9390001 chr3L_9390001 RAL-509 928 chr3L 9498199 9498221 chr3L 9498276 9498295 7 76 0.5 1.0 0.8 3.9 96 chr3L 9498199 intron path - chr3L 9498247 intron path - chr3L 9498295 intron path - chr3L_7_9495001 chr3L_9495001 RAL-509 929 chr3L 9533762 9533785 chr3L 9541315 9541332 412 7 7549 3.0 4.0 3.5 1.6 7570 chr3L 9533762 intergenic not near genes chr3L 9537547 intergenic not near genes chr3L 9541332 intergenic not near genes chr3L_7_9535001 chr3L_9535001 RAL-509 930 chr3L 9571903 9571936 chr3L 9572251 9572284 jockey 9 348 4.5 1.0 2.8 2.4 381 chr3L 9571903 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572284 intron CG42673 + chr3L_9_9570001 chr3L_9570001 RAL-509 931 chr3L 9575906 9575937 chr3L 9580984 9581015 jockey 11 5078 3.5 4.0 3.8 2.3 5109 chr3L 9575906 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_11_9575001 chr3L_9575001 RAL-509 932 chr3L 9589348 9589381 chr3L 9589502 9589535 13 154 3.0 1.0 2.0 4.3 187 chr3L 9589348 intron CG42673 + chr3L 9589442 intron CG42673 + chr3L 9589535 intron CG42673 + chr3L_13_9585001 chr3L_9585001 RAL-509 933 chr3L 9637856 9637883 chr3L 9637938 9637965 10 82 1.5 3.0 2.2 3.1 109 chr3L 9637856 intron fry - chr3L 9637910 intron fry - chr3L 9637965 intron fry - chr3L_10_9635001 chr3L_9635001 RAL-509 934 chr3L 9646468 9646492 chr3L 9646591 9646600 4 116 3.5 1.0 2.2 1.2 132 chr3L 9646468 intron,intron fry -,CG33696 + chr3L 9646534 intron,intron fry -,CG33696 + chr3L 9646600 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-509 935 chr3L 9699930 9699959 chr3L 9700017 9700043 12 86 0.5 3.5 2.0 4.0 113 chr3L 9699930 3` UTR UbcD4 + chr3L 9699986 3` UTR UbcD4 + chr3L 9700043 3` UTR UbcD4 + chr3L_12_9695001 chr3L_9695001 RAL-509 936 chr3L 9773777 9773791 chr3L 9774912 9774926 7 1132 23.0 16.0 19.5 0.3 1149 chr3L 9773777 intron CG8177 + chr3L 9774352 intron CG8177 + chr3L 9774926 intron CG8177 + chr3L_7_9770001 chr3L_9770001 RAL-509 937 chr3L 9773156 9773169 chr3L 9776231 9776251 4 3076 15.0 25.5 20.2 0.2 3095 chr3L 9773156 intron CG8177 + chr3L 9774704 intron CG8177 + chr3L 9776251 intron CG8177 + chr3L_4_9770001 chr3L_9770001 RAL-509 938 chr3L 9918887 9918911 chr3L 9918982 9919006 11 95 3.5 3.0 3.2 2.6 119 chr3L 9918887 intron CG34356 + chr3L 9918946 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_11_9915001 chr3L_9915001 RAL-509 939 chr3L 9929668 9929700 chr3L 9938447 9938479 roo 6 8778 2.5 6.5 4.5 1.1 8811 chr3L 9929668 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_6_9930001 chr3L_9930001 RAL-509 940 chr3L 9951196 9951228 chr3L 9951283 9951313 9 85 2.0 2.5 2.2 2.8 117 chr3L 9951196 intron CG34356 + chr3L 9951254 intron CG34356 + chr3L 9951313 intron CG34356 + chr3L_9_9950001 chr3L_9950001 RAL-509 941 chr3L 10049545 10049571 chr3L 10049623 10049650 7 79 3.5 4.0 3.8 1.5 105 chr3L 10049545 intron dpr6 + chr3L 10049598 intron dpr6 + chr3L 10049650 intron dpr6 + chr3L_7_10045001 chr3L_10045001 RAL-509 942 chr3L 10124450 10124481 chr3L 10124526 10124557 12 75 3.5 4.0 3.8 2.5 107 chr3L 10124450 intron dpr6 + chr3L 10124504 intron dpr6 + chr3L 10124557 intron dpr6 + chr3L_12_10120001 chr3L_10120001 RAL-509 943 chr3L 10127740 10127757 chr3L 10127814 10127834 6 72 8.0 2.5 5.2 1.0 94 chr3L 10127740 intron dpr6 + chr3L 10127787 intron dpr6 + chr3L 10127834 intron dpr6 + chr3L_6_10125001 chr3L_10125001 RAL-509 944 chr3L 10127758 10127765 chr3L 10127812 10127827 7 66 6.5 3.0 4.8 1.2 69 chr3L 10127758 intron dpr6 + chr3L 10127792 intron dpr6 + chr3L 10127827 intron dpr6 + chr3L_7_10125001 chr3L_10125001 RAL-509 945 chr3L 10214729 10214830 chr3L 10214816 10214932 14 92 0.0 0.0 0.0 14.0 203 chr3L 10214729 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_14_10210001 chr3L_10210001 RAL-509 946 chr3L 10222742 10222777 chr3L 10222822 10222857 8 80 0.0 2.0 1.0 4.0 115 chr3L 10222742 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222857 intron scramb1 - chr3L_8_10220001 chr3L_10220001 RAL-509 947 chr3L 10298668 10298699 chr3L 10298755 10298786 4 87 0.5 0.5 0.5 2.7 118 chr3L 10298668 intergenic not near genes chr3L 10298727 intergenic not near genes chr3L 10298786 intergenic not near genes chr3L_4_10295001 chr3L_10295001 RAL-509 948 chr3L 10300053 10300070 chr3L 10300145 10300145 7 89 2.5 0.5 1.5 2.8 92 chr3L 10300053 intergenic not near genes chr3L 10300099 intergenic not near genes chr3L 10300145 intergenic not near genes chr3L_7_10300001 chr3L_10300001 RAL-509 949 chr3L 10308737 10308769 chr3L 10308814 10308846 14 77 3.5 3.5 3.5 3.1 109 chr3L 10308737 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308846 intergenic not near genes chr3L_14_10305001 chr3L_10305001 RAL-509 950 chr3L 10348653 10348671 chr3L 10348770 10348787 4 117 2.0 0.0 1.0 2.0 134 chr3L 10348653 intron CR44327 + chr3L 10348720 intron CR44327 + chr3L 10348787 intron CR44327 + chr3L_4_10345001 chr3L_10345001 RAL-509 951 chr3L 10381333 10381343 chr3L 10381411 10381421 5 79 6.0 0.0 3.0 1.2 88 chr3L 10381333 intergenic not near genes chr3L 10381377 intergenic not near genes chr3L 10381421 intergenic not near genes chr3L_5_10380001 chr3L_10380001 RAL-509 952 chr3L 10386390 10386413 chr3L 10386465 10386486 6 75 2.0 4.0 3.0 1.5 96 chr3L 10386390 intergenic CR45245 + chr3L 10386438 intergenic CR45245 + chr3L 10386486 5` UTR CR45245 + chr3L_6_10385001 chr3L_10385001 RAL-509 953 chr3L 10414944 10414977 chr3L 10417315 10417349 Doc 13 2365 0.5 1.5 1.0 6.5 2405 chr3L 10414944 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_13_10415001 chr3L_10415001 RAL-509 954 chr3L 10417574 10417602 chr3L 10417651 10417678 8 73 3.5 3.5 3.5 1.8 104 chr3L 10417574 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-509 955 chr3L 10600459 10600468 chr3L 10600541 10600550 4 81 3.0 2.0 2.5 1.1 91 chr3L 10600459 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-509 956 chr3L 10614459 10614487 chr3L 10614536 10614544 4 72 4.0 5.0 4.5 0.7 85 chr3L 10614459 intergenic not near genes chr3L 10614502 intergenic not near genes chr3L 10614544 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-509 957 chr3L 10762836 10762864 chr3L 10762920 10762946 5 82 1.5 2.0 1.8 1.8 110 chr3L 10762836 intergenic not near genes chr3L 10762891 intergenic not near genes chr3L 10762946 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-509 958 chr3L 10956456 10956467 chr3L 10956573 10956584 4 116 1.0 3.5 2.2 1.2 128 chr3L 10956456 intergenic not near genes chr3L 10956520 intergenic not near genes chr3L 10956584 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-509 959 chr3L 10980589 10980626 chr3L 10980664 10980676 6 72 0.5 0.5 0.5 4.0 87 chr3L 10980589 intergenic not near genes chr3L 10980632 intergenic not near genes chr3L 10980676 intergenic klu - chr3L_6_10980001 chr3L_10980001 RAL-509 960 chr3L 11004229 11004244 chr3L 11004344 11004344 4 110 3.0 7.0 5.0 0.7 115 chr3L 11004229 intron klu - chr3L 11004286 intron klu - chr3L 11004344 intron klu - chr3L_4_11000001 chr3L_11000001 RAL-509 961 chr3L 11083506 11083527 chr3L 11083604 11083625 5 98 3.5 1.0 2.2 1.6 119 chr3L 11083506 intron JIL-1 - chr3L 11083566 intron JIL-1 - chr3L 11083625 intron JIL-1 - chr3L_5_11080001 chr3L_11080001 RAL-509 962 chr3L 11085693 11085703 chr3L 11085776 11085786 4 83 2.0 2.0 2.0 1.3 93 chr3L 11085693 exon JIL-1 - chr3L 11085740 intron JIL-1 - chr3L 11085786 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-509 963 chr3L 11087060 11087089 chr3L 11088848 11088878 S-element 11 1789 0.0 4.0 2.0 3.7 1818 chr3L 11087060 intron JIL-1 - chr3L 11087969 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_11_11085001 chr3L_11085001 RAL-509 964 chr3L 11090063 11090091 chr3L 11090151 11090179 4 88 1.5 0.0 0.8 2.2 116 chr3L 11090063 intron JIL-1 - chr3L 11090121 intron JIL-1 - chr3L 11090179 intron JIL-1 - chr3L_4_11090001 chr3L_11090001 RAL-509 965 chr3L 11105291 11105328 chr3L 11107002 11107039 X-element 8 1710 1.5 0.5 1.0 4.0 1748 chr3L 11105291 intergenic not near genes chr3L 11106165 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_8_11105001 chr3L_11105001 RAL-509 966 chr3L 11157733 11157768 chr3L 11157852 11157887 11 118 1.5 2.5 2.0 3.7 154 chr3L 11157733 intron CG32082 + chr3L 11157810 intron CG32082 + chr3L 11157887 intron CG32082 + chr3L_11_11155001 chr3L_11155001 RAL-509 967 chr3L 11264465 11264496 chr3L 11271416 11271441 17.6 10 6951 3.0 1.0 2.0 3.3 6976 chr3L 11264465 intergenic not near genes chr3L 11267953 intergenic not near genes chr3L 11271441 intergenic not near genes chr3L_10_11265001 chr3L_11265001 RAL-509 968 chr3L 11277460 11277484 chr3L 11278455 11278477 Rt1a 4 994 3.0 3.0 3.0 1.0 1017 chr3L 11277460 intergenic not near genes chr3L 11277968 intergenic not near genes chr3L 11278477 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-509 969 chr3L 11284939 11284946 chr3L 11285015 11285025 4 78 8.0 3.0 5.5 0.6 86 chr3L 11284939 5` UTR CR45404 + chr3L 11284982 5` UTR CR45404 + chr3L 11285025 5` UTR CR45404 + chr3L_4_11280001 chr3L_11280001 RAL-509 970 chr3L 11302256 11302264 chr3L 11302433 11302441 5 177 4.5 1.5 3.0 1.2 185 chr3L 11302256 intergenic not near genes chr3L 11302348 intergenic not near genes chr3L 11302441 intergenic not near genes chr3L_5_11300001 chr3L_11300001 RAL-509 971 chr3L 11340526 11340545 chr3L 11340650 11340653 7 119 3.0 3.5 3.2 1.7 127 chr3L 11340526 intergenic not near genes chr3L 11340590 intergenic not near genes chr3L 11340653 intergenic not near genes chr3L_7_11340001 chr3L_11340001 RAL-509 972 chr3L 11535010 11535026 chr3L 11535094 11535109 5 84 2.0 3.0 2.5 1.4 99 chr3L 11535010 intron Mob2 - chr3L 11535060 intron Mob2 - chr3L 11535109 intron Mob2 - chr3L_5_11535001 chr3L_11535001 RAL-509 973 chr3L 11546295 11546315 chr3L 11546401 11546417 7 105 2.5 1.5 2.0 2.3 122 chr3L 11546295 intron Mob2 - chr3L 11546356 intron Mob2 - chr3L 11546417 intron Mob2 - chr3L_7_11545001 chr3L_11545001 RAL-509 974 chr3L 11564791 11564811 chr3L 11572407 11572436 412 5 7623 2.0 1.5 1.8 1.8 7645 chr3L 11564791 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-509 975 chr3L 11663750 11663757 chr3L 11663875 11663882 6 125 1.0 1.0 1.0 3.0 132 chr3L 11663750 intron CG32085 - chr3L 11663816 intron CG32085 - chr3L 11663882 intron CG32085 - chr3L_6_11660001 chr3L_11660001 RAL-509 976 chr3L 11678094 11678125 chr3L 11678181 11678212 8 87 3.5 2.0 2.8 2.1 118 chr3L 11678094 intron CG32085 - chr3L 11678153 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_8_11675001 chr3L_11675001 RAL-509 977 chr3L 11723084 11723115 chr3L 11727879 11727910 Doc 6 4794 2.0 2.0 2.0 2.0 4826 chr3L 11723084 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-509 978 chr3L 11740136 11740152 chr3L 11740231 11740250 8 97 5.5 8.0 6.8 1.0 114 chr3L 11740136 intron CG6024 - chr3L 11740193 intron CG6024 - chr3L 11740250 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-509 979 chr3L 11744014 11744039 chr3L 11744119 11744147 10 106 3.0 0.0 1.5 4.0 133 chr3L 11744014 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-509 980 chr3L 11850141 11850171 chr3L 11850236 11850261 7 94 1.5 0.0 0.8 3.9 120 chr3L 11850141 intergenic not near genes chr3L 11850201 intergenic CG44837 - chr3L 11850261 intergenic CG44837 - chr3L_7_11850001 chr3L_11850001 RAL-509 981 chr3L 11864562 11864579 chr3L 11865854 11865874 pogo 6 1294 4.0 3.0 3.5 1.3 1312 chr3L 11864562 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865874 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-509 982 chr3L 11905125 11905140 chr3L 11905207 11905222 4 82 2.0 2.5 2.2 1.2 97 chr3L 11905125 intron CG44837 - chr3L 11905174 intron CG44837 - chr3L 11905222 intron CG44837 - chr3L_4_11905001 chr3L_11905001 RAL-509 983 chr3L 11912507 11912527 chr3L 11912590 11912610 6 83 2.5 4.5 3.5 1.3 103 chr3L 11912507 intron CG44837 - chr3L 11912558 intron CG44837 - chr3L 11912610 intron CG44837 - chr3L_6_11910001 chr3L_11910001 RAL-509 984 chr3L 12013911 12013932 chr3L 12014002 12014022 10 91 1.5 2.5 2.0 3.3 111 chr3L 12013911 intron rols - chr3L 12013966 intron rols - chr3L 12014022 intron rols - chr3L_10_12010001 chr3L_12010001 RAL-509 985 chr3L 12075424 12075446 chr3L 12075513 12075534 8 89 4.0 0.0 2.0 2.7 110 chr3L 12075424 intron Sema-5c - chr3L 12075479 intron Sema-5c - chr3L 12075534 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-509 986 chr3L 12089084 12089104 chr3L 12089164 12089184 7 80 3.5 3.0 3.2 1.7 100 chr3L 12089084 3` UTR CG17154 + chr3L 12089134 3` UTR CG17154 + chr3L 12089184 3` UTR CG17154 + chr3L_7_12085001 chr3L_12085001 RAL-509 987 chr3L 12091782 12091810 chr3L 12091917 12091945 9 135 2.5 3.5 3.0 2.2 163 chr3L 12091782 intergenic not near genes chr3L 12091864 intergenic not near genes chr3L 12091945 intergenic not near genes chr3L_9_12090001 chr3L_12090001 RAL-509 988 chr3L 12170792 12170824 chr3L 12170874 12170906 6 82 0.5 2.0 1.2 2.7 114 chr3L 12170792 intron Rh7 - chr3L 12170849 intron Rh7 - chr3L 12170906 intron Rh7 - chr3L_6_12170001 chr3L_12170001 RAL-509 989 chr3L 12304095 12304114 chr3L 12304168 12304190 10 75 3.0 3.5 3.2 2.4 95 chr3L 12304095 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_10_12300001 chr3L_12300001 RAL-509 990 chr3L 12369538 12369563 chr3L 12369628 12369653 7 90 2.5 2.0 2.2 2.2 115 chr3L 12369538 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369653 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-509 991 chr3L 12446271 12446296 chr3L 12446349 12446371 5 77 2.0 4.5 3.2 1.2 100 chr3L 12446271 intergenic not near genes chr3L 12446321 intergenic not near genes chr3L 12446371 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-509 992 chr3L 12785192 12785218 chr3L 12785262 12785283 7 74 0.5 2.5 1.5 2.8 91 chr3L 12785192 3` UTR Atg1 - chr3L 12785238 3` UTR Atg1 - chr3L 12785283 3` UTR Atg1 - chr3L_7_12785001 chr3L_12785001 RAL-509 993 chr3L 12788423 12788439 chr3L 12788542 12788559 6 120 4.0 4.5 4.2 1.2 136 chr3L 12788423 intron Atg1 - chr3L 12788491 intron Atg1 - chr3L 12788559 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-509 994 chr3L 12801993 12802004 chr3L 12802057 12802075 4 72 4.0 2.5 3.2 1.0 82 chr3L 12801993 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802075 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-509 995 chr3L 12874923 12874961 chr3L 12877215 12877253 jockey 8 2292 2.0 1.5 1.8 2.9 2330 chr3L 12874923 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-509 996 chr3L 12919275 12919286 chr3L 12924748 12924759 Rt1c 4 5473 7.5 3.0 5.2 0.6 5484 chr3L 12919275 intergenic not near genes chr3L 12922017 intergenic not near genes chr3L 12924759 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-509 997 chr3L 12919293 12919310 chr3L 12924747 12924775 Rt1c 8 5464 2.5 3.0 2.8 2.1 5482 chr3L 12919293 intergenic not near genes chr3L 12922034 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-509 998 chr3L 12950110 12950131 chr3L 12950184 12950207 4 75 1.0 2.5 1.8 1.4 97 chr3L 12950110 intergenic not near genes chr3L 12950158 intergenic not near genes chr3L 12950207 intergenic not near genes chr3L_4_12950001 chr3L_12950001 RAL-509 999 chr3L 12957797 12957820 chr3L 12962279 12962302 copia 9 4482 5.0 5.0 5.0 1.5 4505 chr3L 12957797 intergenic not near genes chr3L 12960050 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-509 1000 chr3L 12966134 12966157 chr3L 12966223 12966239 5 88 4.5 0.5 2.5 1.4 105 chr3L 12966134 intron Or69a - chr3L 12966186 intron Or69a - chr3L 12966239 intron Or69a - chr3L_5_12965001 chr3L_12965001 RAL-509 1001 chr3L 13007695 13007956 chr3L 13007774 13008053 16 85 0.0 1.5 0.8 8.9 358 chr3L 13007695 exon CG11263 + chr3L 13007874 3` UTR CG11263 + chr3L 13008053 intergenic CG11263 +,CG14117 + chr3L_16_13005001 chr3L_13005001 RAL-509 1002 chr3L 13056453 13056734 chr3L 13056610 13056819 8 103 0.5 0.0 0.2 6.7 366 chr3L 13056453 intergenic not near genes chr3L 13056636 intergenic not near genes chr3L 13056819 intergenic not near genes chr3L_8_13055001 chr3L_13055001 RAL-509 1003 chr3L 13065683 13065720 chr3L 13065766 13065803 14 83 4.0 5.5 4.8 2.4 120 chr3L 13065683 intergenic not near genes chr3L 13065743 intergenic not near genes chr3L 13065803 intergenic not near genes chr3L_14_13065001 chr3L_13065001 RAL-509 1004 chr3L 13074037 13074072 chr3L 13074170 13074205 15 132 2.0 4.0 3.0 3.8 168 chr3L 13074037 intergenic not near genes chr3L 13074121 intergenic not near genes chr3L 13074205 intergenic not near genes chr3L_15_13070001 chr3L_13070001 RAL-509 1005 chr3L 13137653 13137678 chr3L 13137736 13137766 6 79 3.0 3.5 3.2 1.4 113 chr3L 13137653 intergenic not near genes chr3L 13137710 intergenic not near genes chr3L 13137766 intergenic not near genes chr3L_6_13135001 chr3L_13135001 RAL-509 1006 chr3L 13206242 13206262 chr3L 13206323 13206344 10 82 3.5 5.5 4.5 1.8 102 chr3L 13206242 intergenic not near genes chr3L 13206293 intergenic not near genes chr3L 13206344 intergenic not near genes chr3L_10_13205001 chr3L_13205001 RAL-509 1007 chr3L 13223220 13223232 chr3L 13223297 13223309 5 77 0.0 2.0 1.0 2.5 89 chr3L 13223220 intergenic not near genes chr3L 13223264 intergenic not near genes chr3L 13223309 intergenic not near genes chr3L_5_13220001 chr3L_13220001 RAL-509 1008 chr3L 13267287 13267303 chr3L 13267400 13267416 4 112 3.0 3.0 3.0 1.0 129 chr3L 13267287 intron caps + chr3L 13267352 intron caps + chr3L 13267416 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-509 1009 chr3L 13301252 13301271 chr3L 13301334 13301353 6 82 0.0 0.0 0.0 6.0 101 chr3L 13301252 intergenic SP + chr3L 13301302 intergenic SP + chr3L 13301353 intergenic SP + chr3L_6_13300001 chr3L_13300001 RAL-509 1010 chr3L 13375333 13375356 chr3L 13375437 13375460 7 104 2.0 4.5 3.2 1.7 127 chr3L 13375333 intergenic not near genes chr3L 13375396 intergenic not near genes chr3L 13375460 intergenic not near genes chr3L_7_13375001 chr3L_13375001 RAL-509 1011 chr3L 13455755 13455783 chr3L 13455910 13455938 9 155 1.0 3.0 2.0 3.0 183 chr3L 13455755 intron CG10738 + chr3L 13455846 intron CG10738 + chr3L 13455938 intron CG10738 + chr3L_9_13455001 chr3L_13455001 RAL-509 1012 chr3L 13525155 13525189 chr3L 13532951 13532985 roo 11 7796 4.5 4.0 4.2 2.1 7830 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_11_13525001 chr3L_13525001 RAL-509 1013 chr3L 13707839 13707849 chr3L 13707915 13707924 4 76 5.5 3.5 4.5 0.7 85 chr3L 13707839 intron bru-3 - chr3L 13707882 intron bru-3 - chr3L 13707924 intron bru-3 - chr3L_4_13705001 chr3L_13705001 RAL-509 1014 chr3L 13804549 13804579 chr3L 13822835 13822854 roo 6 18284 3.0 4.0 3.5 1.3 18305 chr3L 13804549 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822854 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-509 1015 chr3L 13824527 13824552 chr3L 13824862 13824887 7 335 5.0 2.0 3.5 1.6 360 chr3L 13824527 intergenic not near genes chr3L 13824707 intergenic not near genes chr3L 13824887 intergenic not near genes chr3L_7_13820001 chr3L_13820001 RAL-509 1016 chr3L 13862481 13862502 chr3L 13862681 13862709 7 201 2.0 3.5 2.8 1.8 228 chr3L 13862481 intron CG8745 - chr3L 13862595 intron CG8745 - chr3L 13862709 intron CG8745 - chr3L_7_13860001 chr3L_13860001 RAL-509 1017 chr3L 13898229 13898247 chr3L 13898313 13898331 10 84 2.0 2.5 2.2 3.1 102 chr3L 13898229 intron dysc - chr3L 13898280 intron dysc - chr3L 13898331 intron dysc - chr3L_10_13895001 chr3L_13895001 RAL-509 1018 chr3L 13907592 13907623 chr3L 13907679 13907710 10 87 1.0 2.5 1.8 3.6 118 chr3L 13907592 3` UTR Rgl - chr3L 13907651 3` UTR Rgl - chr3L 13907710 3` UTR Rgl - chr3L_10_13905001 chr3L_13905001 RAL-509 1019 chr3L 13957886 13957902 chr3L 13958079 13958093 8 192 4.5 4.0 4.2 1.5 207 chr3L 13957886 intron CG32137 + chr3L 13957990 intron CG32137 + chr3L 13958093 intron CG32137 + chr3L_8_13955001 chr3L_13955001 RAL-509 1020 chr3L 14076290 14076311 chr3L 14076368 14076389 10 77 0.0 2.5 1.2 4.5 99 chr3L 14076290 intron btl + chr3L 14076340 intron btl + chr3L 14076389 intron btl + chr3L_10_14075001 chr3L_14075001 RAL-509 1021 chr3L 14215061 14215081 chr3L 14215141 14215161 6 80 4.5 2.0 3.2 1.4 100 chr3L 14215061 intron nuf + chr3L 14215111 intron nuf + chr3L 14215161 intron nuf + chr3L_6_14215001 chr3L_14215001 RAL-509 1022 chr3L 14245568 14245587 chr3L 14245662 14245681 1360 7 94 1.0 2.0 1.5 2.8 113 chr3L 14245568 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245681 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-509 1023 chr3L 14282586 14282605 chr3L 14282666 14282669 8 78 4.5 3.5 4.0 1.6 83 chr3L 14282586 intron fz + chr3L 14282628 intron fz + chr3L 14282669 intron fz + chr3L_8_14280001 chr3L_14280001 RAL-509 1024 chr3L 14331457 14331489 chr3L 14331540 14331570 10 79 2.5 1.0 1.8 3.6 113 chr3L 14331457 intron fz + chr3L 14331514 intron fz + chr3L 14331570 intron fz + chr3L_10_14330001 chr3L_14330001 RAL-509 1025 chr3L 14399183 14399193 chr3L 14399271 14399282 6 88 1.0 0.0 0.5 4.0 99 chr3L 14399183 intergenic not near genes chr3L 14399232 intergenic not near genes chr3L 14399282 intergenic not near genes chr3L_6_14395001 chr3L_14395001 RAL-509 1026 chr3L 14455366 14455376 chr3L 14455447 14455457 7 81 6.0 0.0 3.0 1.8 91 chr3L 14455366 intron bbg - chr3L 14455412 intron bbg - chr3L 14455457 intron bbg - chr3L_7_14455001 chr3L_14455001 RAL-509 1027 chr3L 14462889 14462907 chr3L 14462977 14462995 4 88 0.0 0.5 0.2 3.3 106 chr3L 14462889 intron bbg - chr3L 14462942 intron bbg - chr3L 14462995 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-509 1028 chr3L 14468449 14468471 chr3L 14473654 14473677 copia 6 5206 2.0 3.0 2.5 1.7 5228 chr3L 14468449 intron bbg - chr3L 14471063 intron bbg - chr3L 14473677 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-509 1029 chr3L 14653912 14653941 chr3L 14654048 14654069 5 135 4.0 2.5 3.2 1.2 157 chr3L 14653912 intron dlp + chr3L 14653990 intron dlp + chr3L 14654069 intron dlp + chr3L_5_14650001 chr3L_14650001 RAL-509 1030 chr3L 14721182 14721210 chr3L 14723024 14723052 Rt1c 6 1839 4.0 2.5 3.2 1.4 1870 chr3L 14721182 intron ome + chr3L 14722117 intron ome + chr3L 14723052 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-509 1031 chr3L 14725598 14725620 chr3L 14728596 14728618 Doc 5 2998 2.0 3.5 2.8 1.3 3020 chr3L 14725598 intron ome + chr3L 14727108 intron ome + chr3L 14728618 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-509 1032 chr3L 14729513 14729546 chr3L 14729626 14729659 4 111 2.0 1.5 1.8 1.4 146 chr3L 14729513 intron ome + chr3L 14729586 intron ome + chr3L 14729659 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-509 1033 chr3L 14740898 14740906 chr3L 14740987 14740995 6 89 4.5 1.0 2.8 1.6 97 chr3L 14740898 intron ome + chr3L 14740946 intron ome + chr3L 14740995 intron ome + chr3L_6_14740001 chr3L_14740001 RAL-509 1034 chr3L 14740907 14740922 chr3L 14740979 14741011 6 86 3.5 0.0 1.8 2.1 104 chr3L 14740907 intron ome + chr3L 14740959 intron ome + chr3L 14741011 intron ome + chr3L_6_14740001 chr3L_14740001 RAL-509 1035 chr3L 14913901 14913932 chr3L 14913978 14914009 5 77 3.0 1.5 2.2 1.6 108 chr3L 14913901 intron DCX-EMAP + chr3L 14913955 intron DCX-EMAP + chr3L 14914009 intron DCX-EMAP + chr3L_5_14910001 chr3L_14910001 RAL-509 1036 chr3L 14917660 14917692 chr3L 14917743 14917769 4 81 3.5 3.5 3.5 0.9 109 chr3L 14917660 intron DCX-EMAP + chr3L 14917714 intron DCX-EMAP + chr3L 14917769 intron DCX-EMAP + chr3L_4_14915001 chr3L_14915001 RAL-509 1037 chr3L 14922107 14922130 chr3L 14922210 14922237 7 106 3.0 2.0 2.5 2.0 130 chr3L 14922107 intron DCX-EMAP + chr3L 14922172 intron DCX-EMAP + chr3L 14922237 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 RAL-509 1038 chr3L 15048118 15048146 chr3L 15048482 15048510 6 364 8.5 16.0 12.2 0.5 392 chr3L 15048118 intron Sytbeta - chr3L 15048314 intron Sytbeta - chr3L 15048510 intron Sytbeta - chr3L_6_15045001 chr3L_15045001 RAL-509 1039 chr3L 15085047 15085083 chr3L 15086213 15086249 1360 5 1166 2.5 0.5 1.5 2.0 1202 chr3L 15085047 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086249 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-509 1040 chr3L 15193699 15193717 chr3L 15193868 15193886 5 169 2.5 1.5 2.0 1.7 187 chr3L 15193699 intergenic not near genes chr3L 15193792 intergenic not near genes chr3L 15193886 intergenic not near genes chr3L_5_15190001 chr3L_15190001 RAL-509 1041 chr3L 15233565 15233578 chr3L 15233646 15233659 5 81 1.0 2.0 1.5 2.0 94 chr3L 15233565 intergenic not near genes chr3L 15233612 intergenic not near genes chr3L 15233659 intergenic not near genes chr3L_5_15230001 chr3L_15230001 RAL-509 1042 chr3L 15384957 15384970 chr3L 15385085 15385096 8 128 5.0 2.0 3.5 1.8 139 chr3L 15384957 intergenic not near genes chr3L 15385026 intergenic not near genes chr3L 15385096 intergenic not near genes chr3L_8_15385001 chr3L_15385001 RAL-509 1043 chr3L 15444649 15444685 chr3L 15444743 15444779 12 91 2.0 3.0 2.5 3.4 130 chr3L 15444649 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444779 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-509 1044 chr3L 15447951 15447957 chr3L 15448046 15448052 4 95 1.0 6.5 3.8 0.8 101 chr3L 15447951 intergenic not near genes chr3L 15448002 intergenic not near genes chr3L 15448052 intergenic not near genes chr3L_4_15445001 chr3L_15445001 RAL-509 1045 chr3L 15466037 15466129 chr3L 15466119 15466225 5 85 0.0 0.0 0.0 5.0 188 chr3L 15466037 intergenic not near genes chr3L 15466131 intergenic not near genes chr3L 15466225 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-509 1046 chr3L 15472648 15472655 chr3L 15472725 15472732 5 77 10.0 8.0 9.0 0.5 84 chr3L 15472648 exon CG7804 - chr3L 15472690 exon CG7804 - chr3L 15472732 exon CG7804 - chr3L_5_15470001 chr3L_15470001 RAL-509 1047 chr3L 15615931 15615959 chr3L 15616027 15616055 7 96 1.5 6.0 3.8 1.5 124 chr3L 15615931 intron comm3 - chr3L 15615993 intron comm3 - chr3L 15616055 intron comm3 - chr3L_7_15615001 chr3L_15615001 RAL-509 1048 chr3L 15633191 15633216 chr3L 15633271 15633296 8 80 1.5 2.0 1.8 2.9 105 chr3L 15633191 intron comm3 - chr3L 15633244 intron comm3 - chr3L 15633296 intron comm3 - chr3L_8_15630001 chr3L_15630001 RAL-509 1049 chr3L 15695975 15696010 chr3L 15696053 15696088 14 77 2.0 4.5 3.2 3.3 113 chr3L 15695975 intergenic not near genes chr3L 15696032 intergenic not near genes chr3L 15696088 intergenic not near genes chr3L_14_15695001 chr3L_15695001 RAL-509 1050 chr3L 15741284 15741304 chr3L 15741367 15741375 5 79 2.0 2.0 2.0 1.7 91 chr3L 15741284 intergenic not near genes chr3L 15741330 intergenic not near genes chr3L 15741375 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-509 1051 chr3L 15750709 15750739 chr3L 15750806 15750836 8 97 2.5 2.0 2.2 2.5 127 chr3L 15750709 intergenic not near genes chr3L 15750772 intergenic not near genes chr3L 15750836 intergenic not near genes chr3L_8_15750001 chr3L_15750001 RAL-509 1052 chr3L 15756878 15756911 chr3L 15756961 15756994 10 81 2.5 0.0 1.2 4.5 116 chr3L 15756878 intergenic not near genes chr3L 15756936 intergenic not near genes chr3L 15756994 intergenic not near genes chr3L_10_15755001 chr3L_15755001 RAL-509 1053 chr3L 15874881 15874886 chr3L 15874948 15874976 4 78 3.0 4.5 3.8 0.8 95 chr3L 15874881 intron pHCl - chr3L 15874928 intron pHCl - chr3L 15874976 intron pHCl - chr3L_4_15870001 chr3L_15870001 RAL-509 1054 chr3L 15929198 15929220 chr3L 15938345 15938367 roo 6 9147 2.5 0.5 1.5 2.4 9169 chr3L 15929198 intron Pka-C3 - chr3L 15933782 intron Pka-C3 - chr3L 15938367 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 RAL-509 1055 chr3L 15948752 15948754 chr3L 15948835 15948837 4 83 5.0 3.0 4.0 0.8 85 chr3L 15948752 intron Pka-C3 - chr3L 15948794 intron Pka-C3 - chr3L 15948837 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-509 1056 chr3L 15948755 15948772 chr3L 15948829 15948855 4 73 3.0 2.0 2.5 1.1 100 chr3L 15948755 intron Pka-C3 - chr3L 15948805 intron Pka-C3 - chr3L 15948855 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-509 1057 chr3L 16162599 16162623 chr3L 16162683 16162707 9 84 5.0 3.5 4.2 1.7 108 chr3L 16162599 intron CG5151 - chr3L 16162653 intron CG5151 - chr3L 16162707 intron CG5151 - chr3L_9_16160001 chr3L_16160001 RAL-509 1058 chr3L 16184106 16184140 chr3L 16188925 16188946 X-element 7 4816 2.0 3.0 2.5 2.0 4840 chr3L 16184106 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188946 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-509 1059 chr3L 16216997 16217021 chr3L 16217084 16217091 6 84 3.5 2.5 3.0 1.5 94 chr3L 16216997 intron CG13073 - chr3L 16217044 intron CG13073 - chr3L 16217091 intron CG13073 - chr3L_6_16215001 chr3L_16215001 RAL-509 1060 chr3L 16322823 16322858 chr3L 16322913 16322948 13 88 1.5 3.5 2.5 3.7 125 chr3L 16322823 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322948 intergenic not near genes chr3L_13_16320001 chr3L_16320001 RAL-509 1061 chr3L 16360883 16360916 chr3L 16360961 16360977 8 75 4.0 2.5 3.2 1.9 94 chr3L 16360883 intron CG45057 - chr3L 16360930 intron CG45057 - chr3L 16360977 intron CG45057 - chr3L_8_16360001 chr3L_16360001 RAL-509 1062 chr3L 16443859 16443873 chr3L 16446199 16446213 Doc 4 2340 3.5 6.5 5.0 0.7 2354 chr3L 16443859 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446213 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-509 1063 chr3L 16493974 16494013 chr3L 16494490 16494518 jockey 14 516 8.5 2.0 5.2 2.3 544 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494246 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494518 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_14_16490001 chr3L_16490001 RAL-509 1064 chr3L 16537851 16537879 chr3L 16537938 16537961 4 86 0.0 1.0 0.5 2.7 110 chr3L 16537851 intron CG43373 - chr3L 16537906 intron CG43373 - chr3L 16537961 intron CG43373 - chr3L_4_16535001 chr3L_16535001 RAL-509 1065 chr3L 16540053 16540084 chr3L 16540141 16540172 8 88 1.0 4.0 2.5 2.3 119 chr3L 16540053 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540172 intron CG43373 - chr3L_8_16540001 chr3L_16540001 RAL-509 1066 chr3L 16616513 16616541 chr3L 16621837 16621869 297 6 5326 1.5 1.5 1.5 2.4 5356 chr3L 16616513 3` UTR Abl - chr3L 16619191 3` UTR Abl - chr3L 16621869 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-509 1067 chr3L 16659108 16659135 chr3L 16659183 16659202 14 76 2.5 4.0 3.2 3.3 94 chr3L 16659108 intron Baldspot - chr3L 16659155 intron Baldspot - chr3L 16659202 intron Baldspot - chr3L_14_16655001 chr3L_16655001 RAL-509 1068 chr3L 16684021 16684052 chr3L 16689242 16689273 copia 5 5221 2.5 2.0 2.2 1.6 5252 chr3L 16684021 intron,intron Lasp -,CG43954 - chr3L 16686647 intron,intron Lasp -,CG43954 - chr3L 16689273 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_5_16685001 chr3L_16685001 RAL-509 1069 chr3L 16749207 16749236 chr3L 16749283 16749312 5 76 4.0 2.5 3.2 1.2 105 chr3L 16749207 intergenic not near genes chr3L 16749260 intergenic not near genes chr3L 16749312 intergenic not near genes chr3L_5_16745001 chr3L_16745001 RAL-509 1070 chr3L 16817875 16817908 chr3L 16818014 16818046 5 138 4.0 1.5 2.8 1.3 171 chr3L 16817875 intron,intron nudC +,CG13024 - chr3L 16817960 intron,intron nudC +,CG13024 - chr3L 16818046 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-509 1071 chr3L 16861027 16861050 chr3L 16861129 16861152 7 102 2.5 1.5 2.0 2.3 125 chr3L 16861027 intron,exon Rh4 -,CG13029 + chr3L 16861090 intron,intron Rh4 -,CG13029 + chr3L 16861152 intron,intron Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-509 1072 chr3L 16869579 16869606 chr3L 16869662 16869689 8 83 3.0 2.0 2.5 2.3 110 chr3L 16869579 intron Lmpt + chr3L 16869634 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-509 1073 chr3L 16873339 16873360 chr3L 16873444 16873465 8 105 2.5 3.5 3.0 2.0 126 chr3L 16873339 intron Lmpt + chr3L 16873402 intron Lmpt + chr3L 16873465 intron Lmpt + chr3L_8_16870001 chr3L_16870001 RAL-509 1074 chr3L 16945727 16945755 chr3L 16954880 16954885 roo 9 9147 8.0 3.5 5.8 1.3 9158 chr3L 16945727 exon Obp73a + chr3L 16950306 intergenic not near genes chr3L 16954885 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-509 1075 chr3L 17085005 17085022 chr3L 17094152 17094171 roo 4 9148 3.5 1.5 2.5 1.1 9166 chr3L 17085005 intron Rbp6 - chr3L 17089588 intron Rbp6 - chr3L 17094171 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-509 1076 chr3L 17142731 17142756 chr3L 17142955 17142984 8 224 3.5 2.5 3.0 2.0 253 chr3L 17142731 intron Rbp6 - chr3L 17142858 intron Rbp6 - chr3L 17142984 intron Rbp6 - chr3L_8_17140001 chr3L_17140001 RAL-509 1077 chr3L 17146953 17146979 chr3L 17147035 17147049 7 79 0.5 2.5 1.5 2.8 96 chr3L 17146953 intron Rbp6 - chr3L 17147001 intron Rbp6 - chr3L 17147049 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-509 1078 chr3L 17149167 17149187 chr3L 17149248 17149263 6 80 4.5 0.0 2.2 1.9 96 chr3L 17149167 intron Rbp6 - chr3L 17149215 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-509 1079 chr3L 17194438 17194443 chr3L 17194524 17194527 4 86 0.0 5.0 2.5 1.1 89 chr3L 17194438 intron Rbp6 - chr3L 17194482 intron Rbp6 - chr3L 17194527 intron Rbp6 - chr3L_4_17190001 chr3L_17190001 RAL-509 1080 chr3L 17237391 17237407 chr3L 17237543 17237559 5 152 2.5 1.0 1.8 1.8 168 chr3L 17237391 intron Rbp6 - chr3L 17237475 intron Rbp6 - chr3L 17237559 intron Rbp6 - chr3L_5_17235001 chr3L_17235001 RAL-509 1081 chr3L 17310087 17310092 chr3L 17310176 17310181 5 89 0.0 2.5 1.2 2.3 94 chr3L 17310087 intergenic not near genes chr3L 17310134 intergenic not near genes chr3L 17310181 intergenic not near genes chr3L_5_17310001 chr3L_17310001 RAL-509 1082 chr3L 17331066 17331096 chr3L 17331155 17331186 8 90 1.5 2.0 1.8 2.9 120 chr3L 17331066 intergenic not near genes chr3L 17331126 intergenic not near genes chr3L 17331186 intergenic not near genes chr3L_8_17330001 chr3L_17330001 RAL-509 1083 chr3L 17344632 17344654 chr3L 17344715 17344723 10 82 1.5 3.0 2.2 3.1 91 chr3L 17344632 exon brv2 - chr3L 17344678 5` UTR brv2 - chr3L 17344723 intergenic brv2 -,Mip - chr3L_10_17340001 chr3L_17340001 RAL-509 1084 chr3L 17414533 17414539 chr3L 17414986 17414990 5 452 4.0 1.5 2.8 1.3 457 chr3L 17414533 intron blot - chr3L 17414762 intron blot - chr3L 17414990 intron blot - chr3L_5_17410001 chr3L_17410001 RAL-509 1085 chr3L 17510745 17510761 chr3L 17510829 17510845 4 84 0.5 4.5 2.5 1.1 100 chr3L 17510745 exon Oatp74D + chr3L 17510795 intron Oatp74D + chr3L 17510845 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-509 1086 chr3L 17516986 17517010 chr3L 17524544 17524564 412 12 7557 3.0 4.0 3.5 2.7 7578 chr3L 17516986 intron CG7564 + chr3L 17520775 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_12_17520001 chr3L_17520001 RAL-509 1087 chr3L 17592231 17592265 chr3L 17592307 17592341 9 74 2.0 2.0 2.0 3.0 110 chr3L 17592231 intron Eip74EF - chr3L 17592286 intron Eip74EF - chr3L 17592341 intron Eip74EF - chr3L_9_17590001 chr3L_17590001 RAL-509 1088 chr3L 17695401 17695420 chr3L 17695677 17695695 9 276 0.5 0.5 0.5 6.0 294 chr3L 17695401 intron Ccn + chr3L 17695548 intron Ccn + chr3L 17695695 intron Ccn + chr3L_9_17695001 chr3L_17695001 RAL-509 1089 chr3L 18000680 18000706 chr3L 18000757 18000783 11 77 1.0 2.5 1.8 3.9 103 chr3L 18000680 intron Eip75B - chr3L 18000732 intron Eip75B - chr3L 18000783 intron Eip75B - chr3L_11_18000001 chr3L_18000001 RAL-509 1090 chr3L 18006222 18006253 chr3L 18006346 18006362 5 121 1.5 1.5 1.5 2.0 140 chr3L 18006222 intron Eip75B - chr3L 18006292 intron Eip75B - chr3L 18006362 intron Eip75B - chr3L_5_18005001 chr3L_18005001 RAL-509 1091 chr3L 18029960 18029968 chr3L 18030036 18030045 5 77 1.0 0.0 0.5 3.3 85 chr3L 18029960 intron Eip75B - chr3L 18030002 intron Eip75B - chr3L 18030045 intron Eip75B - chr3L_5_18030001 chr3L_18030001 RAL-509 1092 chr3L 18047705 18047741 chr3L 18056762 18056797 roo 6 9057 0.0 1.0 0.5 4.0 9092 chr3L 18047705 intron Eip75B - chr3L 18052251 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-509 1093 chr3L 18106251 18106285 chr3L 18106370 18106404 5 119 2.0 0.0 1.0 2.5 153 chr3L 18106251 intergenic CG13698 -,mRpS26 + chr3L 18106328 intergenic CG13698 -,mRpS26 + chr3L 18106404 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-509 1094 chr3L 18163986 18163999 chr3L 18164186 18164201 4 201 2.5 1.0 1.8 1.4 215 chr3L 18163986 intergenic not near genes chr3L 18164094 intergenic not near genes chr3L 18164201 intergenic not near genes chr3L_4_18160001 chr3L_18160001 RAL-509 1095 chr3L 18248952 18248983 chr3L 18249050 18249081 9 97 0.5 2.0 1.2 4.1 129 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249081 intergenic not near genes chr3L_9_18245001 chr3L_18245001 RAL-509 1096 chr3L 18258856 18258884 chr3L 18258982 18259010 4 126 1.0 2.0 1.5 1.6 154 chr3L 18258856 intergenic not near genes chr3L 18258933 intergenic not near genes chr3L 18259010 intergenic not near genes chr3L_4_18255001 chr3L_18255001 RAL-509 1097 chr3L 18262473 18262484 chr3L 18262556 18262567 4 83 3.5 1.0 2.2 1.2 94 chr3L 18262473 intergenic not near genes chr3L 18262520 intergenic not near genes chr3L 18262567 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-509 1098 chr3L 18267842 18267995 chr3L 18267919 18268072 6 77 2.5 1.5 2.0 2.0 230 chr3L 18267842 intergenic not near genes chr3L 18267957 intergenic not near genes chr3L 18268072 intergenic not near genes chr3L_6_18265001 chr3L_18265001 RAL-509 1099 chr3L 18328290 18328325 chr3L 18328418 18328451 9 128 0.5 2.0 1.2 4.1 161 chr3L 18328290 intergenic not near genes chr3L 18328370 intergenic not near genes chr3L 18328451 intergenic not near genes chr3L_9_18325001 chr3L_18325001 RAL-509 1100 chr3L 18436059 18436091 chr3L 18436157 18436189 4 98 0.5 1.0 0.8 2.2 130 chr3L 18436059 intergenic not near genes chr3L 18436124 intergenic not near genes chr3L 18436189 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-509 1101 chr3L 18456276 18456299 chr3L 18456364 18456387 5 88 2.0 2.0 2.0 1.7 111 chr3L 18456276 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456387 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-509 1102 chr3L 18506134 18506159 chr3L 18509597 18509622 F-element 8 3463 1.0 1.0 1.0 4.0 3488 chr3L 18506134 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509622 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-509 1103 chr3L 18528628 18528650 chr3L 18537789 18537811 roo 4 9161 2.0 3.0 2.5 1.1 9183 chr3L 18528628 intergenic not near genes chr3L 18533220 intergenic not near genes chr3L 18537811 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-509 1104 chr3L 18538636 18538646 chr3L 18539129 18539139 4 492 7.5 3.5 5.5 0.6 503 chr3L 18538636 intergenic not near genes chr3L 18538888 intergenic not near genes chr3L 18539139 intergenic not near genes chr3L_4_18535001 chr3L_18535001 RAL-509 1105 chr3L 18538647 18538650 chr3L 18539126 18539130 4 486 5.5 3.5 4.5 0.7 483 chr3L 18538647 intergenic not near genes chr3L 18538888 intergenic not near genes chr3L 18539130 intergenic not near genes chr3L_4_18535001 chr3L_18535001 RAL-509 1106 chr3L 18590271 18590285 chr3L 18590353 18590367 8 81 4.5 4.0 4.2 1.5 96 chr3L 18590271 intergenic CG7271 + chr3L 18590319 intergenic CG7271 + chr3L 18590367 intergenic CG7271 + chr3L_8_18590001 chr3L_18590001 RAL-509 1107 chr3L 18593953 18593980 chr3L 18595933 18595960 Doc 5 1980 0.5 0.0 0.2 4.2 2007 chr3L 18593953 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_5_18590001 chr3L_18590001 RAL-509 1108 chr3L 18656183 18656216 chr3L 18656268 18656298 17 84 6.0 2.0 4.0 3.4 115 chr3L 18656183 intron MYPT-75D + chr3L 18656240 intron MYPT-75D + chr3L 18656298 intron MYPT-75D + chr3L_17_18655001 chr3L_18655001 RAL-509 1109 chr3L 18665216 18665228 chr3L 18665301 18665313 4 85 2.0 0.0 1.0 2.0 97 chr3L 18665216 intron MYPT-75D + chr3L 18665264 intron MYPT-75D + chr3L 18665313 intron MYPT-75D + chr3L_4_18665001 chr3L_18665001 RAL-509 1110 chr3L 18721771 18721805 chr3L 18721862 18721895 10 90 2.0 2.0 2.0 3.3 124 chr3L 18721771 intergenic CG12477 - chr3L 18721833 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-509 1111 chr3L 18723408 18723436 chr3L 18723486 18723514 4 75 1.5 1.0 1.2 1.8 106 chr3L 18723408 intergenic CG12477 -,CR43985 + chr3L 18723461 intergenic CG12477 -,CR43985 + chr3L 18723514 intergenic CG12477 -,CR43985 + chr3L_4_18720001 chr3L_18720001 RAL-509 1112 chr3L 18730377 18730387 chr3L 18730557 18730567 6 180 6.5 0.0 3.2 1.4 190 chr3L 18730377 intergenic not near genes chr3L 18730472 intergenic not near genes chr3L 18730567 intergenic not near genes chr3L_6_18730001 chr3L_18730001 RAL-509 1113 chr3L 18753547 18753566 chr3L 18753629 18753648 4 82 1.5 0.5 1.0 2.0 101 chr3L 18753547 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753648 intron ftz-f1 - chr3L_4_18750001 chr3L_18750001 RAL-509 1114 chr3L 18772409 18772438 chr3L 18781090 18781119 roo 6 8681 1.5 3.5 2.5 1.7 8710 chr3L 18772409 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781119 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-509 1115 chr3L 18861763 18861794 chr3L 18861856 18861883 8 92 3.5 2.0 2.8 2.1 120 chr3L 18861763 intergenic not near genes chr3L 18861823 intergenic not near genes chr3L 18861883 intergenic not near genes chr3L_8_18860001 chr3L_18860001 RAL-509 1116 chr3L 18888436 18888451 chr3L 18888517 18888533 7 82 3.0 0.5 1.8 2.5 97 chr3L 18888436 intron CG3961 - chr3L 18888484 intron CG3961 - chr3L 18888533 intron CG3961 - chr3L_7_18885001 chr3L_18885001 RAL-509 1117 chr3L 18933627 18933640 chr3L 18933721 18933733 4 94 2.5 1.5 2.0 1.3 106 chr3L 18933627 intron CG32204 - chr3L 18933680 intron CG32204 - chr3L 18933733 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-509 1118 chr3L 18935841 18935857 chr3L 18935930 18935946 5 89 1.5 1.0 1.2 2.3 105 chr3L 18935841 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935946 intron CG32204 - chr3L_5_18935001 chr3L_18935001 RAL-509 1119 chr3L 18958603 18958623 chr3L 18958678 18958697 4 75 0.5 3.5 2.0 1.3 94 chr3L 18958603 intergenic not near genes chr3L 18958650 intergenic not near genes chr3L 18958697 intergenic not near genes chr3L_4_18955001 chr3L_18955001 RAL-509 1120 chr3L 19008859 19008869 chr3L 19009173 19009206 jockey 4 332 2.5 3.5 3.0 1.0 347 chr3L 19008859 intron nkd - chr3L 19009032 intron nkd - chr3L 19009206 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-509 1121 chr3L 19082037 19082071 chr3L 19082139 19082172 9 101 4.5 5.5 5.0 1.5 135 chr3L 19082037 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082172 intron Mkp3 - chr3L_9_19080001 chr3L_19080001 RAL-509 1122 chr3L 19101714 19101743 chr3L 19102086 19102115 5 372 0.0 4.0 2.0 1.7 401 chr3L 19101714 intergenic not near genes chr3L 19101914 intergenic not near genes chr3L 19102115 intergenic not near genes chr3L_5_19100001 chr3L_19100001 RAL-509 1123 chr3L 19115656 19115674 chr3L 19115820 19115852 BS 6 175 6.5 3.0 4.8 1.0 196 chr3L 19115656 intron CG14082 - chr3L 19115754 intron CG14082 - chr3L 19115852 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-509 1124 chr3L 19117045 19117073 chr3L 19124489 19124520 mdg1 6 7445 5.0 3.5 4.2 1.2 7475 chr3L 19117045 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-509 1125 chr3L 19138559 19138585 chr3L 19138640 19138664 9 77 2.0 3.0 2.5 2.6 105 chr3L 19138559 intron CG14082 - chr3L 19138612 intron CG14082 - chr3L 19138664 intron CG14082 - chr3L_9_19135001 chr3L_19135001 RAL-509 1126 chr3L 19182394 19182412 chr3L 19182475 19182492 4 80 2.5 3.5 3.0 1.0 98 chr3L 19182394 intron fz2 - chr3L 19182443 intron fz2 - chr3L 19182492 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-509 1127 chr3L 19186948 19186974 chr3L 19187042 19187055 7 94 2.0 2.0 2.0 2.3 107 chr3L 19186948 intron fz2 - chr3L 19187002 intron fz2 - chr3L 19187055 intron fz2 - chr3L_7_19185001 chr3L_19185001 RAL-509 1128 chr3L 19208058 19208090 chr3L 19209432 19209464 Doc 8 1373 3.0 1.0 2.0 2.7 1406 chr3L 19208058 intron fz2 - chr3L 19208761 intron fz2 - chr3L 19209464 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-509 1129 chr3L 19220634 19220637 chr3L 22908066 22908066 5 3687431 16.5 17.5 17.0 0.3 3687432 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-509 1130 chr3L 19238734 19238740 chr3L 19238841 19238847 4 107 0.5 2.0 1.2 1.8 113 chr3L 19238734 intergenic not near genes chr3L 19238790 intergenic not near genes chr3L 19238847 intergenic not near genes chr3L_4_19235001 chr3L_19235001 RAL-509 1131 chr3L 19263238 19263262 chr3L 19263399 19263412 11 160 1.5 2.0 1.8 3.9 174 chr3L 19263238 intron Max - chr3L 19263325 intron Max - chr3L 19263412 intron Max - chr3L_11_19260001 chr3L_19260001 RAL-509 1132 chr3L 19274180 19274212 chr3L 19274259 19274290 7 79 2.0 4.5 3.2 1.7 110 chr3L 19274180 intergenic CG14085 + chr3L 19274235 intergenic CG14085 + chr3L 19274290 intergenic CG14085 + chr3L_7_19270001 chr3L_19270001 RAL-509 1133 chr3L 19439281 19439290 chr3L 19439367 19439376 4 86 0.0 4.5 2.2 1.2 95 chr3L 19439281 intergenic not near genes chr3L 19439328 intergenic not near genes chr3L 19439376 intergenic not near genes chr3L_4_19435001 chr3L_19435001 RAL-509 1134 chr3L 19527927 19527952 chr3L 19528006 19528030 7 79 2.0 1.0 1.5 2.8 103 chr3L 19527927 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528030 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-509 1135 chr3L 19543552 19543563 chr3L 19543627 19543640 7 77 2.5 6.0 4.2 1.3 88 chr3L 19543552 5` UTR,3` UTR CG9279 -,CG43885 + chr3L 19543596 5` UTR,3` UTR CG9279 -,CG43885 + chr3L 19543640 5` UTR CG9279 - chr3L_7_19540001 chr3L_19540001 RAL-509 1136 chr3L 19579657 19579685 chr3L 19579771 19579799 9 114 1.5 1.0 1.2 4.1 142 chr3L 19579657 intron Shal - chr3L 19579728 intron Shal - chr3L 19579799 intron Shal - chr3L_9_19575001 chr3L_19575001 RAL-509 1137 chr3L 19848507 19848534 chr3L 19857697 19857724 roo 9 9190 3.5 4.0 3.8 1.9 9217 chr3L 19848507 intron Papss + chr3L 19853116 intron Papss + chr3L 19857724 intron Papss + chr3L_9_19850001 chr3L_19850001 RAL-509 1138 chr3L 19861824 19861848 chr3L 19863612 19863635 S-element 6 1788 2.0 3.5 2.8 1.6 1811 chr3L 19861824 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863635 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-509 1139 chr3L 19933539 19933552 chr3L 19934361 19934374 6 822 4.0 2.0 3.0 1.5 835 chr3L 19933539 intergenic CR45678 + chr3L 19933956 5` UTR CR45678 + chr3L 19934374 intergenic CR45678 + chr3L_6_19930001 chr3L_19930001 RAL-509 1140 chr3L 19981206 19981231 chr3L 19981286 19981311 8 80 1.5 1.0 1.2 3.6 105 chr3L 19981206 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981311 intergenic CG17732 + chr3L_8_19980001 chr3L_19980001 RAL-509 1141 chr3L 20101897 20101906 chr3L 20101970 20101983 5 76 8.5 6.0 7.2 0.6 86 chr3L 20101897 intron CG14186 - chr3L 20101940 intron CG14186 - chr3L 20101983 intron CG14186 - chr3L_5_20100001 chr3L_20100001 RAL-509 1142 chr3L 20113479 20113508 chr3L 20113571 20113603 5 94 4.0 1.0 2.5 1.4 124 chr3L 20113479 intergenic not near genes chr3L 20113541 intergenic not near genes chr3L 20113603 intergenic not near genes chr3L_5_20110001 chr3L_20110001 RAL-509 1143 chr3L 20143078 20143117 chr3L 20143158 20143187 12 77 1.0 4.5 2.8 3.2 109 chr3L 20143078 intergenic not near genes chr3L 20143132 intergenic not near genes chr3L 20143187 intergenic not near genes chr3L_12_20140001 chr3L_20140001 RAL-509 1144 chr3L 20148282 20148317 chr3L 20148372 20148407 12 90 3.0 1.5 2.2 3.8 125 chr3L 20148282 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_12_20145001 chr3L_20145001 RAL-509 1145 chr3L 20156180 20156192 chr3L 20156290 20156314 5 119 4.0 4.0 4.0 1.0 134 chr3L 20156180 intron CG42674 - chr3L 20156247 intron CG42674 - chr3L 20156314 intron CG42674 - chr3L_5_20155001 chr3L_20155001 RAL-509 1146 chr3L 20321095 20321104 chr3L 20342901 20342910 17.6 5 21806 10.5 15.5 13.0 0.4 21815 chr3L 20321095 exon Spn77Bb + chr3L 20332002 intergenic not near genes chr3L 20342910 exon Spn77Bc + chr3L_5_20330001 chr3L_20330001 RAL-509 1147 chr3L 20386937 20386964 chr3L 20387039 20387066 13 102 1.5 2.5 2.0 4.3 129 chr3L 20386937 intron fbl + chr3L 20387002 intron fbl + chr3L 20387066 intron fbl + chr3L_13_20385001 chr3L_20385001 RAL-509 1148 chr3L 20447700 20447712 chr3L 20447779 20447780 5 77 6.0 0.0 3.0 1.2 80 chr3L 20447700 intron CG5910 + chr3L 20447740 intron CG5910 + chr3L 20447780 intron CG5910 + chr3L_5_20445001 chr3L_20445001 RAL-509 1149 chr3L 20476753 20476780 chr3L 20484352 20484379 springer 6 7599 3.5 2.0 2.8 1.6 7626 chr3L 20476753 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484379 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-509 1150 chr3L 20490753 20490771 chr3L 20490898 20490916 5 145 1.5 1.0 1.2 2.3 163 chr3L 20490753 intron ZnT77C - chr3L 20490834 intron ZnT77C - chr3L 20490916 intron ZnT77C - chr3L_5_20490001 chr3L_20490001 RAL-509 1151 chr3L 20590070 20590095 chr3L 20590604 20590607 412 6 526 2.5 5.0 3.8 1.2 537 chr3L 20590070 intergenic not near genes chr3L 20590338 intergenic not near genes chr3L 20590607 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-509 1152 chr3L 20733811 20733825 chr3L 20733897 20733911 4 86 3.0 3.5 3.2 1.0 100 chr3L 20733811 intron CG13252 + chr3L 20733861 intron CG13252 + chr3L 20733911 intron CG13252 + chr3L_4_20730001 chr3L_20730001 RAL-509 1153 chr3L 20769249 20769271 chr3L 20769592 20769614 5 343 22.5 22.5 22.5 0.2 365 chr3L 20769249 exon CG4074 - chr3L 20769432 5` UTR CG4074 - chr3L 20769614 5` UTR CG4186 + chr3L_5_20765001 chr3L_20765001 RAL-509 1154 chr3L 20849274 20849302 chr3L 20849353 20849381 8 79 1.5 5.0 3.2 1.9 107 chr3L 20849274 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-509 1155 chr3L 20917092 20917119 chr3L 20917169 20917196 9 77 3.0 3.5 3.2 2.1 104 chr3L 20917092 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917196 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-509 1156 chr3L 21014920 21014947 chr3L 21023400 21023422 Tirant 8 8476 2.0 3.0 2.5 2.3 8502 chr3L 21014920 intron skd - chr3L 21019171 intron skd - chr3L 21023422 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-509 1157 chr3L 21082213 21082239 chr3L 21082291 21082317 7 78 1.0 2.5 1.8 2.5 104 chr3L 21082213 intron ko - chr3L 21082265 intron ko - chr3L 21082317 intron ko - chr3L_7_21080001 chr3L_21080001 RAL-509 1158 chr3L 21151867 21151895 chr3L 21156951 21156979 flea 5 5084 2.0 2.0 2.0 1.7 5112 chr3L 21151867 intron Ac78C - chr3L 21154423 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-509 1159 chr3L 21172839 21172872 chr3L 21172936 21172975 5 102 1.0 3.0 2.0 1.7 136 chr3L 21172839 intergenic chb +,asparagine-synthetase + chr3L 21172907 5` UTR chb + chr3L 21172975 5` UTR chb + chr3L_5_21170001 chr3L_21170001 RAL-509 1160 chr3L 21266334 21266362 chr3L 21266413 21266442 6 80 0.0 2.0 1.0 3.0 108 chr3L 21266334 3` UTR Eip78C + chr3L 21266388 3` UTR Eip78C + chr3L 21266442 3` UTR Eip78C + chr3L_6_21265001 chr3L_21265001 RAL-509 1161 chr3L 21303710 21303738 chr3L 21303796 21303825 5 87 4.0 4.5 4.2 1.0 115 chr3L 21303710 intron CG11309 - chr3L 21303768 intron CG11309 - chr3L 21303825 intron CG11309 - chr3L_5_21300001 chr3L_21300001 RAL-509 1162 chr3L 21306152 21306180 chr3L 21315311 21315339 roo 5 9159 3.0 1.0 2.0 1.7 9187 chr3L 21306152 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310746 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-509 1163 chr3L 21407006 21407025 chr3L 21407085 21407104 5 78 4.5 7.0 5.8 0.7 98 chr3L 21407006 intron rgn + chr3L 21407055 intron rgn + chr3L 21407104 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-509 1164 chr3L 21437603 21437635 chr3L 21437709 21437742 5 104 1.0 1.5 1.2 2.3 139 chr3L 21437603 3` UTR Aef1 + chr3L 21437672 3` UTR Aef1 + chr3L 21437742 3` UTR Aef1 + chr3L_5_21435001 chr3L_21435001 RAL-509 1165 chr3L 21498834 21498864 chr3L 21500470 21500500 1360 5 1636 6.0 6.0 6.0 0.7 1666 chr3L 21498834 intron Glg1 - chr3L 21499667 intron Glg1 - chr3L 21500500 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-509 1166 chr3L 21637324 21637358 chr3L 21637410 21637437 11 86 2.0 3.0 2.5 3.1 113 chr3L 21637324 intron CG32444 + chr3L 21637380 intron CG32444 + chr3L 21637437 intron CG32444 + chr3L_11_21635001 chr3L_21635001 RAL-509 1167 chr3L 21749317 21749340 chr3L 21754477 21754500 Doc 8 5160 4.5 2.0 3.2 1.9 5183 chr3L 21749317 intron Syn1 - chr3L 21751908 intron Syn1 - chr3L 21754500 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-509 1168 chr3L 21776680 21776701 chr3L 21776767 21776788 4 87 2.0 1.0 1.5 1.6 108 chr3L 21776680 intron,intron CG42689 +,CG42552 + chr3L 21776734 intron,intron CG42689 +,CG42552 + chr3L 21776788 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-509 1169 chr3L 21798763 21798782 chr3L 21798852 21798871 5 88 3.0 1.0 2.0 1.7 108 chr3L 21798763 intergenic not near genes chr3L 21798817 intergenic not near genes chr3L 21798871 intergenic not near genes chr3L_5_21795001 chr3L_21795001 RAL-509 1170 chr3L 21799851 21799859 chr3L 21799938 21799946 5 87 2.0 4.5 3.2 1.2 95 chr3L 21799851 intergenic not near genes chr3L 21799898 intergenic not near genes chr3L 21799946 intergenic not near genes chr3L_5_21795001 chr3L_21795001 RAL-509 1171 chr3L 21872427 21872450 chr3L 21872506 21872529 6 79 3.0 2.5 2.8 1.6 102 chr3L 21872427 intron mub + chr3L 21872478 intron mub + chr3L 21872529 intron mub + chr3L_6_21870001 chr3L_21870001 RAL-509 1172 chr3L 21886390 21886398 chr3L 21886473 21886480 4 83 5.5 4.0 4.8 0.7 90 chr3L 21886390 intron,intron mub +,CR43878 - chr3L 21886435 intron,intron mub +,CR43878 - chr3L 21886480 intron,intron mub +,CR43878 - chr3L_4_21885001 chr3L_21885001 RAL-509 1173 chr3L 21886399 21886415 chr3L 21886471 21886498 7 81 2.0 3.5 2.8 1.8 99 chr3L 21886399 intron,intron mub +,CR43878 - chr3L 21886448 intron,intron mub +,CR43878 - chr3L 21886498 intron,intron mub +,CR43878 - chr3L_7_21885001 chr3L_21885001 RAL-509 1174 chr3L 21929728 21929757 chr3L 21929804 21929833 7 76 3.5 1.5 2.5 2.0 105 chr3L 21929728 3` UTR mub + chr3L 21929780 3` UTR mub + chr3L 21929833 3` UTR mub + chr3L_7_21925001 chr3L_21925001 RAL-509 1175 chr3L 22046186 22046215 chr3L 22046289 22046317 14 102 2.0 4.0 3.0 3.5 131 chr3L 22046186 intron Oct-TyrR + chr3L 22046252 intron Oct-TyrR + chr3L 22046317 intron Oct-TyrR + chr3L_14_22045001 chr3L_22045001 RAL-509 1176 chr3L 22099682 22099703 chr3L 22105868 22105889 3S18 5 6186 3.5 1.0 2.2 1.6 6207 chr3L 22099682 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105889 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-509 1177 chr3L 22120055 22120079 chr3L 22120167 22120191 6 111 5.0 1.0 3.0 1.5 136 chr3L 22120055 intergenic not near genes chr3L 22120123 intergenic not near genes chr3L 22120191 intergenic not near genes chr3L_6_22120001 chr3L_22120001 RAL-509 1178 chr3L 22130502 22130519 chr3L 22130648 22130665 5 146 3.0 2.0 2.5 1.4 163 chr3L 22130502 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130665 intergenic not near genes chr3L_5_22130001 chr3L_22130001 RAL-509 1179 chr3L 22137520 22137556 chr3L 22137597 22137633 7 76 2.0 1.5 1.8 2.5 113 chr3L 22137520 intron olf413 + chr3L 22137576 intron olf413 + chr3L 22137633 intron olf413 + chr3L_7_22135001 chr3L_22135001 RAL-509 1180 chr3L 22241301 22241320 chr3L 22241379 22241402 7 80 1.5 4.0 2.8 1.8 101 chr3L 22241301 intron olf413 + chr3L 22241352 intron olf413 + chr3L 22241402 intron olf413 + chr3L_7_22240001 chr3L_22240001 RAL-509 1181 chr3L 22333048 22333075 chr3L 22333126 22333156 5 80 1.5 5.0 3.2 1.2 108 chr3L 22333048 intron Ten-m - chr3L 22333102 intron Ten-m - chr3L 22333156 intron Ten-m - chr3L_5_22330001 chr3L_22330001 RAL-509 1182 chr3L 22447196 22447234 chr3L 22447287 22447325 15 90 1.5 3.5 2.5 4.3 129 chr3L 22447196 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_15_22445001 chr3L_22445001 RAL-509 1183 chr3L 22555769 22555801 chr3L 22563239 22563271 blood 10 7462 3.0 1.0 2.0 3.3 7502 chr3L 22555769 intergenic not near genes chr3L 22559520 intergenic not near genes chr3L 22563271 intergenic not near genes chr3L_10_22555001 chr3L_22555001 RAL-509 1184 chr3L 22570424 22570457 chr3L 22570568 22570601 13 144 4.0 3.0 3.5 2.9 177 chr3L 22570424 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570601 intergenic not near genes chr3L_13_22570001 chr3L_22570001 RAL-509 1185 chr3L 22577620 22577644 chr3L 22582405 22582432 Doc 10 4787 2.5 4.5 3.5 2.2 4812 chr3L 22577620 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582432 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-509 1186 chr3L 22586316 22586347 chr3L 22586405 22586437 9 89 4.0 3.0 3.5 2.0 121 chr3L 22586316 intron CG14459 - chr3L 22586376 intron CG14459 - chr3L 22586437 intron CG14459 - chr3L_9_22585001 chr3L_22585001 RAL-509 1187 chr3L 22617189 22617215 chr3L 22624640 22624667 blood 12 7450 5.0 3.0 4.0 2.4 7478 chr3L 22617189 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_12_22620001 chr3L_22620001 RAL-509 1188 chr3L 22630747 22630771 chr3L 22630816 22630850 7 74 1.5 2.5 2.0 2.3 103 chr3L 22630747 intron CG14459 - chr3L 22630798 intron CG14459 - chr3L 22630850 intron CG14459 - chr3L_7_22630001 chr3L_22630001 RAL-509 1189 chr3L 22737815 22737837 chr3L 22737892 22737918 6 80 1.5 2.5 2.0 2.0 103 chr3L 22737815 intron CG11241 - chr3L 22737866 intron CG11241 - chr3L 22737918 intron CG11241 - chr3L_6_22735001 chr3L_22735001 RAL-509 1190 chr3L 22756403 22756431 chr3L 22756480 22756508 10 77 0.5 5.5 3.0 2.5 105 chr3L 22756403 intron SPoCk + chr3L 22756456 intron SPoCk + chr3L 22756508 intron SPoCk + chr3L_10_22755001 chr3L_22755001 RAL-509 1191 chr3L 22761389 22761415 chr3L 22766823 22766849 Ivk 5 5434 3.0 1.5 2.2 1.6 5460 chr3L 22761389 intron SPoCk + chr3L 22764119 intron SPoCk + chr3L 22766849 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-509 1192 chr3L 22838598 22838615 chr3L 22838679 22838693 6 80 3.0 6.0 4.5 1.1 95 chr3L 22838598 intergenic CG11226 + chr3L 22838646 intergenic CG11226 + chr3L 22838693 intergenic not near genes chr3L_6_22835001 chr3L_22835001 RAL-509 1193 chr3L 22853473 22853723 chr3L 22853551 22853809 12 86 3.5 5.0 4.2 2.3 336 chr3L 22853473 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853641 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_12_22850001 chr3L_22850001 RAL-509 1194 chr3L 22865985 22866013 chr3L 22867118 22867146 Doc 8 1133 2.0 1.5 1.8 2.9 1161 chr3L 22865985 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-509 1195 chr3L 19220635 19220637 chr3L 22908066 22908066 5 3687430 16.5 17.5 17.0 0.3 3687431 chr3L 19220635 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-509 1196 chr3L 19220633 19220637 chr3L 22908067 22908067 4 3687432 16.5 18.0 17.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-509 1197 chr3L 22980582 22980592 chr3L 22980665 22980677 6 85 2.5 1.0 1.8 2.1 95 chr3L 22980582 intergenic not near genes chr3L 22980630 intergenic not near genes chr3L 22980677 intergenic not near genes chr3L_6_22980001 chr3L_22980001 RAL-509 1198 chr3L 22989868 22989886 chr3L 22996836 22996860 297 6 6973 2.5 1.5 2.0 2.0 6992 chr3L 22989868 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996860 intergenic not near genes chr3L_6_22990001 chr3L_22990001 RAL-509 1199 chr3L 23251950 23251971 chr3L 23252067 23252088 7 117 2.5 2.5 2.5 2.0 138 chr3L 23251950 intron nAChRalpha4 + chr3L 23252019 intron nAChRalpha4 + chr3L 23252088 intron nAChRalpha4 + chr3L_7_23250001 chr3L_23250001 RAL-509 1200 chr3L 23854310 23854315 chr3L 23854407 23854413 4 98 4.0 4.5 4.2 0.8 103 chr3L 23854310 intron CG40470 - chr3L 23854362 intron CG40470 - chr3L 23854413 intron CG40470 - chr3L_4_23850001 chr3L_23850001 RAL-509 1201 chr3L 24012419 24012433 chr3L 24020760 24020774 roo 4 8341 2.5 1.0 1.8 1.4 8355 chr3L 24012419 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020774 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-509 1202 chr3L 24021287 24021311 chr3L 24022434 24022467 1360 9 1156 2.0 1.5 1.8 3.2 1180 chr3L 24021287 intergenic not near genes chr3L 24021877 intergenic not near genes chr3L 24022467 intergenic not near genes chr3L_9_24020001 chr3L_24020001 RAL-509 1203 chr3L 24036799 24036811 chr3L 24036889 24036902 6 91 3.0 8.0 5.5 0.9 103 chr3L 24036799 intergenic not near genes chr3L 24036850 intergenic not near genes chr3L 24036902 intergenic not near genes chr3L_6_24035001 chr3L_24035001 RAL-509 1204 chr3L 24282153 24282182 chr3L 24282237 24282266 8 84 1.5 4.0 2.8 2.1 113 chr3L 24282153 intron Snap25 + chr3L 24282210 intron Snap25 + chr3L 24282266 intron Snap25 + chr3L_8_24280001 chr3L_24280001 RAL-509 1205 chr3L 24324293 24324312 chr3L 24324388 24324407 4 95 4.0 1.5 2.8 1.1 114 chr3L 24324293 intergenic not near genes chr3L 24324350 intergenic not near genes chr3L 24324407 intergenic nvd + chr3L_4_24320001 chr3L_24320001 RAL-509 1206 chr3L 24363242 24363272 chr3L 24363320 24363350 5 78 2.5 3.0 2.8 1.3 108 chr3L 24363242 intron nvd + chr3L 24363296 intron nvd + chr3L 24363350 intron nvd + chr3L_5_24360001 chr3L_24360001 RAL-509 1207 chr3L 25106584 25106609 chr3L 25106670 25106696 10 85 3.5 3.0 3.2 2.4 112 chr3L 25106584 intergenic not near genes chr3L 25106640 intergenic not near genes chr3L 25106696 intergenic not near genes chr3L_10_25105001 chr3L_25105001 RAL-509 1208 chr3L 14125392 14125394 chr3L 25270997 25270999 4 11145604 7.0 2.5 4.8 0.7 11145607 chr3L 14125392 exon Sox21b - chr3L 19698196 intergenic not near genes chr3L 25270999 intron CG40467 - chr3L_4_19695001 chr3L_19695001 RAL-509 1209 chr3L 25464084 25464095 chr3L 25464182 25464193 5 97 12.0 11.0 11.5 0.4 109 chr3L 25464084 intergenic not near genes chr3L 25464138 intergenic not near genes chr3L 25464193 intergenic not near genes chr3L_5_25460001 chr3L_25460001 RAL-509 1210 chr3L 25512789 25512802 chr3L 25512867 25512880 4 78 4.0 4.5 4.2 0.8 91 chr3L 25512789 intron CG41343 - chr3L 25512834 intron CG41343 - chr3L 25512880 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-509 1211 chr3L 25513578 25513609 chr3L 25513657 25513688 7 78 1.5 2.0 1.8 2.5 110 chr3L 25513578 intron CG41343 - chr3L 25513633 intron CG41343 - chr3L 25513688 intron CG41343 - chr3L_7_25510001 chr3L_25510001 RAL-509 1212 chr3L 25627821 25627831 chr3L 25627907 25627917 4 86 2.5 6.0 4.2 0.8 96 chr3L 25627821 intron CG41343 - chr3L 25627869 intron CG41343 - chr3L 25627917 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-509 1213 chr3L 25842483 25842499 chr3L 25842569 25842584 5 86 2.5 3.0 2.8 1.3 101 chr3L 25842483 intron CG40178 - chr3L 25842534 intron CG40178 - chr3L 25842584 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-509 1214 chr3L 25886867 25886893 chr3L 25887270 25887294 5 403 2.0 1.0 1.5 2.0 427 chr3L 25886867 intron CG40178 - chr3L 25887080 intron CG40178 - chr3L 25887294 intron CG40178 - chr3L_5_25885001 chr3L_25885001 RAL-509 1215 chr3L 26009431 26009453 chr3L 26009522 26009543 5 91 1.0 6.0 3.5 1.1 112 chr3L 26009431 intron CG40178 - chr3L 26009487 intron CG40178 - chr3L 26009543 intron CG40178 - chr3L_5_26005001 chr3L_26005001 RAL-509 1216 chr3L 27167972 27167983 chr3L 27168070 27168103 5 111 1.0 4.5 2.8 1.3 131 chr3L 27167972 intergenic not near genes chr3L 27168038 intergenic not near genes chr3L 27168103 intergenic not near genes chr3L_5_27165001 chr3L_27165001 RAL-509 1217 chr3L 27368891 27368910 chr3L 27369436 27369455 5 545 2.5 1.0 1.8 1.8 564 chr3L 27368891 intron Dbp80 + chr3L 27369173 intron Dbp80 + chr3L 27369455 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-509 1218 chr3L 27727650 27727657 chr3L 27728738 27728738 G-element 4 1096 2.0 3.5 2.8 1.1 1088 chr3L 27727650 intergenic not near genes chr3L 27728194 intergenic not near genes chr3L 27728738 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-509 1219 chr3R 1443436 1443452 chr3R 1443512 1443528 7 75 3.5 2.0 2.8 1.8 92 chr3R 1443436 intron CG40155 + chr3R 1443482 intron CG40155 + chr3R 1443528 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-509 1220 chr3R 1521172 1521183 chr3R 1521248 1521269 4 84 8.0 7.5 7.8 0.5 97 chr3R 1521172 intergenic not near genes chr3R 1521220 intergenic not near genes chr3R 1521269 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-509 1221 chr3R 2534141 2534160 chr3R 2541710 2541729 5 7569 7.5 14.0 10.8 0.4 7588 chr3R 2534141 intergenic not near genes chr3R 2537935 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-509 1222 chr3R 3877476 3877497 chr3R 3877615 3877638 6 140 3.5 1.0 2.2 1.9 162 chr3R 3877476 intergenic not near genes chr3R 3877557 intergenic not near genes chr3R 3877638 intergenic not near genes chr3R_6_3875001 chr3R_3875001 RAL-509 1223 chr3R 4063812 4063828 chr3R 4069092 4069108 6 5279 4.0 12.0 8.0 0.7 5296 chr3R 4063812 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069108 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-509 1224 chr3R 4206083 4206104 chr3R 4211657 4211671 mdg3 4 5572 1.0 1.5 1.2 1.8 5588 chr3R 4206083 intron CG14636 - chr3R 4208877 intron CG14636 - chr3R 4211671 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-509 1225 chr3R 4408410 4408437 chr3R 4412714 4412741 Juan 7 4304 3.5 3.5 3.5 1.6 4331 chr3R 4408410 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412741 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-509 1226 chr3R 4553697 4553730 chr3R 19449335 19449368 5 14895638 8.5 0.0 4.2 1.0 14895671 chr3R 4553697 intron CG34357 - chr3R 12001532 intron,exon Tk -,Ect3 + chr3R 19449368 intron CG31221 + chr3R_5_12000001 chr3R_12000001 RAL-509 1227 chr3R 4599301 4599331 chr3R 4599385 4599414 5 84 1.5 1.5 1.5 2.0 113 chr3R 4599301 intron CR44317 - chr3R 4599358 intron CR44317 - chr3R 4599414 intron CR44317 - chr3R_5_4595001 chr3R_4595001 RAL-509 1228 chr3R 4764464 4764491 chr3R 4764696 4764724 7 233 2.0 7.0 4.5 1.3 260 chr3R 4764464 intron,intron atms +,CG44098 - chr3R 4764594 intron,intron atms +,CG44098 - chr3R 4764724 intron,intron atms +,CG44098 - chr3R_7_4760001 chr3R_4760001 RAL-509 1229 chr3R 4769158 4769191 chr3R 4769236 4769269 13 78 0.5 1.0 0.8 7.2 111 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_13_4765001 chr3R_4765001 RAL-509 1230 chr3R 4861574 4861597 chr3R 4861650 4861678 10 77 2.0 4.0 3.0 2.5 104 chr3R 4861574 intron opa + chr3R 4861626 intron opa + chr3R 4861678 intron opa + chr3R_10_4860001 chr3R_4860001 RAL-509 1231 chr3R 4887484 4887505 chr3R 4894861 4894868 rover 4 7373 1.5 5.0 3.2 1.0 7384 chr3R 4887484 intergenic not near genes chr3R 4891176 intergenic not near genes chr3R 4894868 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-509 1232 chr3R 4896291 4896326 chr3R 4896384 4896419 7 93 1.5 0.5 1.0 3.5 128 chr3R 4896291 intergenic CR45580 + chr3R 4896355 intergenic CR45580 + chr3R 4896419 5` UTR CR45580 + chr3R_7_4895001 chr3R_4895001 RAL-509 1233 chr3R 4948380 4948391 chr3R 4949002 4949013 4 622 8.0 6.5 7.2 0.5 633 chr3R 4948380 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949013 3` UTR UbcD6 - chr3R_4_4945001 chr3R_4945001 RAL-509 1234 chr3R 5045848 5045874 chr3R 5052950 5052976 HMS-Beagle 5 7102 1.0 5.0 3.0 1.2 7128 chr3R 5045848 intron CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-509 1235 chr3R 5067983 5068009 chr3R 5073500 5073526 mdg3 6 5517 3.0 2.5 2.8 1.6 5543 chr3R 5067983 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-509 1236 chr3R 5236222 5236242 chr3R 5236349 5236367 10 127 3.5 2.0 2.8 2.6 145 chr3R 5236222 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236294 3` UTR rtp - chr3R 5236367 3` UTR rtp - chr3R_10_5235001 chr3R_5235001 RAL-509 1237 chr3R 5250879 5250913 chr3R 5250991 5251016 6 110 2.5 2.0 2.2 1.9 137 chr3R 5250879 intron CG12163 - chr3R 5250948 intron CG12163 - chr3R 5251016 intron CG12163 - chr3R_6_5250001 chr3R_5250001 RAL-509 1238 chr3R 5278090 5278123 chr3R 5278171 5278203 18 81 4.5 4.0 4.2 3.5 113 chr3R 5278090 intron mtd - chr3R 5278146 intron mtd - chr3R 5278203 intron mtd - chr3R_18_5275001 chr3R_5275001 RAL-509 1239 chr3R 5338398 5338427 chr3R 5343575 5343604 Rt1c 7 5176 1.0 3.0 2.0 2.3 5206 chr3R 5338398 intron mtd - chr3R 5341001 intron mtd - chr3R 5343604 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-509 1240 chr3R 5445966 5445991 chr3R 5452422 5452451 Burdock 7 6459 2.0 2.5 2.2 2.2 6485 chr3R 5445966 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-509 1241 chr3R 5696136 5696146 chr3R 5696232 5696242 5 96 1.5 5.0 3.2 1.2 106 chr3R 5696136 intron plx + chr3R 5696189 intron plx + chr3R 5696242 intron plx + chr3R_5_5695001 chr3R_5695001 RAL-509 1242 chr3R 5712086 5712109 chr3R 5712174 5712197 5 88 3.0 0.5 1.8 1.8 111 chr3R 5712086 3` UTR plx + chr3R 5712142 3` UTR plx + chr3R 5712197 3` UTR plx + chr3R_5_5710001 chr3R_5710001 RAL-509 1243 chr3R 5746016 5746044 chr3R 5746257 5746283 pogo 7 240 3.0 5.5 4.2 1.3 267 chr3R 5746016 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-509 1244 chr3R 5747023 5747046 chr3R 5753213 5753236 diver 4 6190 1.5 2.0 1.8 1.4 6213 chr3R 5747023 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-509 1245 chr3R 5809116 5809133 chr3R 5809363 5809383 pogo 7 248 4.5 2.0 3.2 1.7 267 chr3R 5809116 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-509 1246 chr3R 5822380 5822410 chr3R 5823547 5823577 1360 13 1167 4.5 4.0 4.2 2.5 1197 chr3R 5822380 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823577 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-509 1247 chr3R 5927562 5927586 chr3R 5927799 5927824 pogo 7 236 2.0 4.0 3.0 1.8 262 chr3R 5927562 intron CG34113 - chr3R 5927693 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-509 1248 chr3R 5989338 5989368 chr3R 5989421 5989451 9 82 3.5 4.5 4.0 1.8 113 chr3R 5989338 5` UTR CR44927 + chr3R 5989394 5` UTR CR44927 + chr3R 5989451 5` UTR CR44927 + chr3R_9_5985001 chr3R_5985001 RAL-509 1249 chr3R 6015960 6015991 chr3R 6024441 6024472 Tirant 9 8480 1.5 1.5 1.5 3.6 8512 chr3R 6015960 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-509 1250 chr3R 6117424 6117441 chr3R 6117542 6117547 5 114 3.5 9.0 6.2 0.7 123 chr3R 6117424 intergenic not near genes chr3R 6117486 intergenic not near genes chr3R 6117547 intergenic not near genes chr3R_5_6115001 chr3R_6115001 RAL-509 1251 chr3R 6158509 6158532 chr3R 6167092 6167115 Tirant 7 8583 5.5 5.0 5.2 1.1 8606 chr3R 6158509 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167115 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-509 1252 chr3R 6206281 6206313 chr3R 6206497 6206507 BS 9 214 2.0 2.0 2.0 3.0 226 chr3R 6206281 exon Osi24 + chr3R 6206394 intron Osi24 + chr3R 6206507 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-509 1253 chr3R 6286886 6286916 chr3R 6290106 6290136 8 3221 21.5 11.0 16.2 0.5 3250 chr3R 6286886 intergenic not near genes chr3R 6288511 intron CG15594 + chr3R 6290136 intergenic CG15594 + chr3R_8_6285001 chr3R_6285001 RAL-509 1254 chr3R 6428811 6428823 chr3R 6428913 6428924 4 102 4.0 2.0 3.0 1.0 113 chr3R 6428811 intron gpp + chr3R 6428868 intron gpp + chr3R 6428924 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-509 1255 chr3R 6737516 6737527 chr3R 6739302 6739314 Doc 6 1786 1.5 5.5 3.5 1.3 1798 chr3R 6737516 intron pb - chr3R 6738415 intron pb - chr3R 6739314 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-509 1256 chr3R 6862220 6862247 chr3R 6862307 6862334 7 87 2.0 1.5 1.8 2.5 114 chr3R 6862220 intergenic not near genes chr3R 6862277 intergenic not near genes chr3R 6862334 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-509 1257 chr3R 6912103 6912130 chr3R 6912214 6912241 8 111 2.0 0.0 1.0 4.0 138 chr3R 6912103 intron Antp - chr3R 6912172 intron Antp - chr3R 6912241 intron Antp - chr3R_8_6910001 chr3R_6910001 RAL-509 1258 chr3R 6978880 6978904 chr3R 6978965 6978988 7 85 3.0 2.0 2.5 2.0 108 chr3R 6978880 intron Antp - chr3R 6978934 intron Antp - chr3R 6978988 intron Antp - chr3R_7_6975001 chr3R_6975001 RAL-509 1259 chr3R 7092786 7092816 chr3R 7093350 7093380 14 564 1.5 4.5 3.0 3.5 594 chr3R 7092786 3` UTR CR43685 - chr3R 7093083 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_14_7090001 chr3R_7090001 RAL-509 1260 chr3R 7103287 7103320 chr3R 7103363 7103379 13 69 4.5 4.0 4.2 2.5 92 chr3R 7103287 intron Alh - chr3R 7103333 intron Alh - chr3R 7103379 intron Alh - chr3R_13_7100001 chr3R_7100001 RAL-509 1261 chr3R 7105321 7105350 chr3R 7105404 7105433 8 83 3.0 1.0 2.0 2.7 112 chr3R 7105321 intron Alh - chr3R 7105377 intron Alh - chr3R 7105433 intron Alh - chr3R_8_7105001 chr3R_7105001 RAL-509 1262 chr3R 7132840 7132868 chr3R 7132931 7132959 6 90 0.0 3.5 1.8 2.1 119 chr3R 7132840 intergenic CG31493 + chr3R 7132900 intergenic CG31493 + chr3R 7132959 intergenic CG31493 + chr3R_6_7130001 chr3R_7130001 RAL-509 1263 chr3R 7217460 7217485 chr3R 7217681 7217703 8 221 3.5 3.0 3.2 1.9 243 chr3R 7217460 intergenic CG14605 -,CG14606 - chr3R 7217582 intergenic CG14605 -,CG14606 - chr3R 7217703 3` UTR CG14605 - chr3R_8_7215001 chr3R_7215001 RAL-509 1264 chr3R 7269931 7269946 chr3R 7270025 7270040 4 94 0.5 2.5 1.5 1.6 109 chr3R 7269931 3` UTR Syt4 + chr3R 7269986 3` UTR Syt4 + chr3R 7270040 3` UTR Syt4 + chr3R_4_7265001 chr3R_7265001 RAL-509 1265 chr3R 7302297 7302322 chr3R 7302389 7302401 7 90 5.0 3.0 4.0 1.4 104 chr3R 7302297 intron rn - chr3R 7302349 intron rn - chr3R 7302401 intron rn - chr3R_7_7300001 chr3R_7300001 RAL-509 1266 chr3R 7427783 7427795 chr3R 7427873 7427884 8 90 5.5 3.0 4.2 1.5 101 chr3R 7427783 intergenic not near genes chr3R 7427834 intergenic not near genes chr3R 7427884 intergenic not near genes chr3R_8_7425001 chr3R_7425001 RAL-509 1267 chr3R 7447991 7448006 chr3R 7448069 7448084 8 77 8.5 1.0 4.8 1.4 93 chr3R 7447991 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448084 intergenic not near genes chr3R_8_7445001 chr3R_7445001 RAL-509 1268 chr3R 7536724 7536730 chr3R 7536880 7536906 5 168 12.5 29.5 21.0 0.2 182 chr3R 7536724 3` UTR alpha-Est4 - chr3R 7536815 exon alpha-Est4 - chr3R 7536906 exon alpha-Est4 - chr3R_5_7535001 chr3R_7535001 RAL-509 1269 chr3R 7655010 7655040 chr3R 7655087 7655121 15 79 3.0 3.0 3.0 3.8 111 chr3R 7655010 intergenic not near genes chr3R 7655066 intergenic not near genes chr3R 7655121 intergenic not near genes chr3R_15_7655001 chr3R_7655001 RAL-509 1270 chr3R 7694585 7694609 chr3R 7713646 7713670 invader3 4 19061 0.5 3.0 1.8 1.4 19085 chr3R 7694585 3` UTR Nlg1 + chr3R 7704128 intergenic not near genes chr3R 7713670 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-509 1271 chr3R 7729476 7729499 chr3R 7737404 7737437 Stalker2 8 7937 0.5 2.5 1.5 3.2 7961 chr3R 7729476 intergenic not near genes chr3R 7733456 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-509 1272 chr3R 8090278 8090299 chr3R 8090455 8090476 11 176 4.0 4.0 4.0 2.2 198 chr3R 8090278 5` UTR CR44330 + chr3R 8090377 intergenic CR44330 + chr3R 8090476 intergenic CR44330 + chr3R_11_8090001 chr3R_8090001 RAL-509 1273 chr3R 8094406 8094434 chr3R 8099711 8099739 Transpac 7 5305 3.5 4.5 4.0 1.4 5333 chr3R 8094406 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099739 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-509 1274 chr3R 8101762 8101784 chr3R 8104846 8104867 G2 4 3084 3.5 2.0 2.8 1.1 3105 chr3R 8101762 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104867 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-509 1275 chr3R 8158034 8158051 chr3R 8158116 8158131 7 81 4.5 5.0 4.8 1.2 97 chr3R 8158034 intron grn - chr3R 8158082 intron grn - chr3R 8158131 intron grn - chr3R_7_8155001 chr3R_8155001 RAL-509 1276 chr3R 8201602 8201624 chr3R 8201713 8201735 5 111 3.5 3.0 3.2 1.2 133 chr3R 8201602 intron CR43303 + chr3R 8201668 5` UTR CR43303 + chr3R 8201735 5` UTR CR43303 + chr3R_5_8200001 chr3R_8200001 RAL-509 1277 chr3R 8305702 8305736 chr3R 8305783 8305817 9 81 4.0 3.5 3.8 1.9 115 chr3R 8305702 intergenic Sgt1 - chr3R 8305760 intergenic Sgt1 - chr3R 8305817 intergenic not near genes chr3R_9_8305001 chr3R_8305001 RAL-509 1278 chr3R 8403011 8403041 chr3R 8412177 8412206 roo 10 9165 3.5 6.0 4.8 1.7 9195 chr3R 8403011 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-509 1279 chr3R 8450061 8450085 chr3R 8450189 8450211 6 128 0.0 1.0 0.5 4.0 150 chr3R 8450061 intron CG45263 - chr3R 8450136 intron CG45263 - chr3R 8450211 intron CG45263 - chr3R_6_8450001 chr3R_8450001 RAL-509 1280 chr3R 8570476 8570509 chr3R 8575112 8575144 HMS-Beagle 11 4634 1.5 4.5 3.0 2.8 4668 chr3R 8570476 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575144 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-509 1281 chr3R 8601774 8601799 chr3R 8610927 8610951 roo 13 9153 3.0 4.0 3.5 2.9 9177 chr3R 8601774 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_13_8605001 chr3R_8605001 RAL-509 1282 chr3R 8621547 8621555 chr3R 8621624 8621632 5 77 7.0 8.0 7.5 0.6 85 chr3R 8621547 intron 5-HT2B + chr3R 8621590 intron 5-HT2B + chr3R 8621632 intron 5-HT2B + chr3R_5_8620001 chr3R_8620001 RAL-509 1283 chr3R 8707358 8707381 chr3R 8709799 8709822 jockey 8 2441 2.5 6.0 4.2 1.5 2464 chr3R 8707358 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-509 1284 chr3R 8798658 8798682 chr3R 8798741 8798764 4 82 3.5 1.0 2.2 1.2 106 chr3R 8798658 intron,intron Pif1A -,Pif1B - chr3R 8798711 intron,intron Pif1A -,Pif1B - chr3R 8798764 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-509 1285 chr3R 8856363 8856398 chr3R 8856439 8856475 8 77 2.0 1.0 1.5 3.2 112 chr3R 8856363 intron pyd - chr3R 8856419 intron pyd - chr3R 8856475 intron pyd - chr3R_8_8855001 chr3R_8855001 RAL-509 1286 chr3R 8948301 8948328 chr3R 8948411 8948438 6 110 3.0 3.5 3.2 1.4 137 chr3R 8948301 intergenic not near genes chr3R 8948370 intergenic not near genes chr3R 8948438 intergenic not near genes chr3R_6_8945001 chr3R_8945001 RAL-509 1287 chr3R 8961475 8961506 chr3R 8961572 8961603 8 96 2.5 2.0 2.2 2.5 128 chr3R 8961475 intron CG11966 - chr3R 8961539 intron CG11966 - chr3R 8961603 intron CG11966 - chr3R_8_8960001 chr3R_8960001 RAL-509 1288 chr3R 9036377 9036400 chr3R 9036455 9036478 4 78 2.5 1.5 2.0 1.3 101 chr3R 9036377 intron neur - chr3R 9036428 intron neur - chr3R 9036478 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-509 1289 chr3R 9069502 9069520 chr3R 9069581 9069598 4 78 2.0 6.5 4.2 0.8 96 chr3R 9069502 3` UTR pum - chr3R 9069550 3` UTR pum - chr3R 9069598 3` UTR pum - chr3R_4_9065001 chr3R_9065001 RAL-509 1290 chr3R 9073211 9073246 chr3R 9073297 9073332 7 86 2.0 4.5 3.2 1.7 121 chr3R 9073211 intron pum - chr3R 9073272 intron pum - chr3R 9073332 intron pum - chr3R_7_9070001 chr3R_9070001 RAL-509 1291 chr3R 9141140 9141170 chr3R 9141224 9141254 10 84 2.0 5.0 3.5 2.2 114 chr3R 9141140 intron pum - chr3R 9141197 intron pum - chr3R 9141254 intron pum - chr3R_10_9140001 chr3R_9140001 RAL-509 1292 chr3R 9278782 9278807 chr3R 9284040 9284067 Rt1a 13 5259 0.0 4.0 2.0 4.3 5285 chr3R 9278782 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_13_9280001 chr3R_9280001 RAL-509 1293 chr3R 9284343 9284374 chr3R 9284440 9284471 11 97 3.0 1.5 2.2 3.4 128 chr3R 9284343 intergenic not near genes chr3R 9284407 intergenic not near genes chr3R 9284471 intergenic not near genes chr3R_11_9280001 chr3R_9280001 RAL-509 1294 chr3R 9434692 9434696 chr3R 9434778 9434783 4 87 6.5 2.5 4.5 0.7 91 chr3R 9434692 intron ps + chr3R 9434738 intron ps + chr3R 9434783 intron ps + chr3R_4_9430001 chr3R_9430001 RAL-509 1295 chr3R 9434697 9434720 chr3R 9434776 9434807 5 85 3.5 2.0 2.8 1.3 110 chr3R 9434697 intron ps + chr3R 9434752 intron ps + chr3R 9434807 intron ps + chr3R_5_9430001 chr3R_9430001 RAL-509 1296 chr3R 9644586 9644614 chr3R 9644667 9644691 5 80 1.0 3.5 2.2 1.6 105 chr3R 9644586 intron Dh44 + chr3R 9644638 intron Dh44 + chr3R 9644691 intron Dh44 + chr3R_5_9640001 chr3R_9640001 RAL-509 1297 chr3R 9702260 9702290 chr3R 9702336 9702359 10 75 2.0 2.0 2.0 3.3 99 chr3R 9702260 intron Unc-115a - chr3R 9702310 intron Unc-115a - chr3R 9702359 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 RAL-509 1298 chr3R 10073775 10073800 chr3R 10073884 10073909 7 109 3.0 5.0 4.0 1.4 134 chr3R 10073775 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073909 exon CG5361 - chr3R_7_10070001 chr3R_10070001 RAL-509 1299 chr3R 10263993 10264007 chr3R 10264072 10264086 5 79 3.5 2.0 2.8 1.3 93 chr3R 10263993 intergenic pont +,CG43143 + chr3R 10264040 intergenic pont +,CG43143 + chr3R 10264086 intergenic pont +,CG43143 + chr3R_5_10260001 chr3R_10260001 RAL-509 1300 chr3R 10275567 10275586 chr3R 10275644 10275663 5 76 3.5 4.5 4.0 1.0 96 chr3R 10275567 intron CG43143 + chr3R 10275615 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-509 1301 chr3R 10401898 10401922 chr3R 10402088 10402097 7 183 3.5 7.0 5.2 1.1 199 chr3R 10401898 exon mthl11 + chr3R 10401998 intron mthl11 + chr3R 10402097 exon mthl11 + chr3R_7_10400001 chr3R_10400001 RAL-509 1302 chr3R 10417478 10417495 chr3R 10417813 10417827 4 334 4.0 2.5 3.2 1.0 349 chr3R 10417478 intergenic not near genes chr3R 10417652 intergenic not near genes chr3R 10417827 intergenic not near genes chr3R_4_10415001 chr3R_10415001 RAL-509 1303 chr3R 10505212 10505241 chr3R 10505540 10505567 10 326 5.0 0.5 2.8 2.6 355 chr3R 10505212 intergenic not near genes chr3R 10505390 intergenic not near genes chr3R 10505567 intergenic not near genes chr3R_10_10505001 chr3R_10505001 RAL-509 1304 chr3R 10529862 10529892 chr3R 10529947 10529977 12 84 1.5 1.5 1.5 4.8 115 chr3R 10529862 intron hth - chr3R 10529920 intron hth - chr3R 10529977 intron hth - chr3R_12_10525001 chr3R_10525001 RAL-509 1305 chr3R 10646103 10646140 chr3R 10646254 10646290 8 151 3.0 4.0 3.5 1.8 187 chr3R 10646103 intergenic CR44018 + chr3R 10646196 intergenic CR44018 + chr3R 10646290 intergenic not near genes chr3R_8_10645001 chr3R_10645001 RAL-509 1306 chr3R 10745439 10745448 chr3R 10745511 10745535 5 83 3.0 7.0 5.0 0.8 96 chr3R 10745439 intron TkR86C - chr3R 10745487 intron TkR86C - chr3R 10745535 intron TkR86C - chr3R_5_10745001 chr3R_10745001 RAL-509 1307 chr3R 10804185 10804197 chr3R 10811717 10811729 17.6 4 7532 1.5 2.5 2.0 1.3 7544 chr3R 10804185 intergenic CG14692 - chr3R 10807957 intergenic not near genes chr3R 10811729 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-509 1308 chr3R 10886873 10886905 chr3R 10886953 10886985 11 80 1.5 3.5 2.5 3.1 112 chr3R 10886873 intron Leash + chr3R 10886929 intron Leash + chr3R 10886985 intron Leash + chr3R_11_10885001 chr3R_10885001 RAL-509 1309 chr3R 10919703 10919717 chr3R 10919762 10919795 6 75 2.0 1.5 1.8 2.1 92 chr3R 10919703 intergenic not near genes chr3R 10919749 intergenic not near genes chr3R 10919795 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-509 1310 chr3R 10920043 10920076 chr3R 10920121 10920154 4 78 1.5 2.0 1.8 1.4 111 chr3R 10920043 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920154 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-509 1311 chr3R 10966704 10966734 chr3R 10966785 10966815 10 81 2.5 1.5 2.0 3.3 111 chr3R 10966704 intergenic not near genes chr3R 10966760 intergenic not near genes chr3R 10966815 intergenic not near genes chr3R_10_10965001 chr3R_10965001 RAL-509 1312 chr3R 11102683 11102715 chr3R 11102772 11102802 9 89 1.5 4.0 2.8 2.4 119 chr3R 11102683 intergenic not near genes chr3R 11102742 intergenic not near genes chr3R 11102802 intergenic not near genes chr3R_9_11100001 chr3R_11100001 RAL-509 1313 chr3R 11149874 11149893 chr3R 11149971 11149990 8 97 1.0 5.5 3.2 1.9 116 chr3R 11149874 intergenic not near genes chr3R 11149932 intergenic not near genes chr3R 11149990 intergenic not near genes chr3R_8_11145001 chr3R_11145001 RAL-509 1314 chr3R 11155049 11155061 chr3R 11155127 11155139 5 78 1.5 2.0 1.8 1.8 90 chr3R 11155049 intron Ugt86Dc + chr3R 11155094 intron Ugt86Dc + chr3R 11155139 intron Ugt86Dc + chr3R_5_11155001 chr3R_11155001 RAL-509 1315 chr3R 11285910 11285934 chr3R 11286088 11286120 9 185 2.0 2.0 2.0 3.0 210 chr3R 11285910 intron CR31386 - chr3R 11286015 intron CR31386 - chr3R 11286120 intron CR31386 - chr3R_9_11285001 chr3R_11285001 RAL-509 1316 chr3R 11303091 11303103 chr3R 11303172 11303184 8 81 5.0 4.0 4.5 1.5 93 chr3R 11303091 intron CR31386 - chr3R 11303138 intron CR31386 - chr3R 11303184 intron CR31386 - chr3R_8_11300001 chr3R_11300001 RAL-509 1317 chr3R 11379252 11379263 chr3R 11388404 11388418 roo 7 9154 3.0 2.0 2.5 2.0 9166 chr3R 11379252 intron pros + chr3R 11383835 intron pros + chr3R 11388418 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-509 1318 chr3R 11406292 11406315 chr3R 11406369 11406392 9 77 4.0 2.0 3.0 2.2 100 chr3R 11406292 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406392 3` UTR pros + chr3R_9_11405001 chr3R_11405001 RAL-509 1319 chr3R 11417640 11417673 chr3R 11422205 11422237 7 4567 22.5 24.0 23.2 0.3 4597 chr3R 11417640 exon CG6723 - chr3R 11419938 exon ninaG - chr3R 11422237 5` UTR CG5270 + chr3R_7_11415001 chr3R_11415001 RAL-509 1320 chr3R 11443680 11443710 chr3R 11443771 11443801 10 91 4.0 4.5 4.2 1.9 121 chr3R 11443680 intron,intron sals -,CG17230 + chr3R 11443740 intron,intron sals -,CG17230 + chr3R 11443801 intron,intron sals -,CG17230 + chr3R_10_11440001 chr3R_11440001 RAL-509 1321 chr3R 11461272 11461303 chr3R 11461352 11461383 10 80 3.5 4.0 3.8 2.1 111 chr3R 11461272 intron CG17230 + chr3R 11461328 intron CG17230 + chr3R 11461383 intron CG17230 + chr3R_10_11460001 chr3R_11460001 RAL-509 1322 chr3R 11476950 11476970 chr3R 11477052 11477072 9 102 3.5 2.0 2.8 2.4 122 chr3R 11476950 intergenic not near genes chr3R 11477011 intergenic not near genes chr3R 11477072 intergenic not near genes chr3R_9_11475001 chr3R_11475001 RAL-509 1323 chr3R 11513844 11513877 chr3R 11513927 11513959 11 79 3.0 1.0 2.0 3.7 115 chr3R 11513844 intergenic not near genes chr3R 11513902 intergenic not near genes chr3R 11513959 intergenic not near genes chr3R_11_11510001 chr3R_11510001 RAL-509 1324 chr3R 11518812 11518847 chr3R 11518903 11518938 6 91 6.0 1.5 3.8 1.2 126 chr3R 11518812 intergenic not near genes chr3R 11518875 intergenic not near genes chr3R 11518938 intergenic not near genes chr3R_6_11515001 chr3R_11515001 RAL-509 1325 chr3R 11639230 11639244 chr3R 11639375 11639389 7 145 3.0 2.0 2.5 2.0 159 chr3R 11639230 intron Csk - chr3R 11639310 intron Csk - chr3R 11639389 intron Csk - chr3R_7_11635001 chr3R_11635001 RAL-509 1326 chr3R 11694724 11694735 chr3R 11694816 11694828 4 92 4.5 2.0 3.2 1.0 104 chr3R 11694724 intergenic Fer3 - chr3R 11694776 intergenic Fer3 - chr3R 11694828 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-509 1327 chr3R 11695743 11695767 chr3R 11695824 11695848 10 80 3.5 4.5 4.0 2.0 105 chr3R 11695743 intergenic not near genes chr3R 11695796 intergenic not near genes chr3R 11695848 intergenic not near genes chr3R_10_11695001 chr3R_11695001 RAL-509 1328 chr3R 11841059 11841096 chr3R 11846250 11846285 BS 5 5190 5.0 2.0 3.5 1.1 5226 chr3R 11841059 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846285 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-509 1329 chr3R 11853607 11853635 chr3R 11853973 11854000 7 366 3.5 2.5 3.0 1.8 393 chr3R 11853607 intron CG6959 - chr3R 11853804 intron CG6959 - chr3R 11854000 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-509 1330 chr3R 11914394 11914403 chr3R 11914477 11914483 5 83 1.0 3.0 2.0 1.7 89 chr3R 11914394 intron Cad87A - chr3R 11914438 intron Cad87A - chr3R 11914483 intron Cad87A - chr3R_5_11910001 chr3R_11910001 RAL-509 1331 chr3R 11945385 11945398 chr3R 11945483 11945495 5 98 2.5 2.0 2.2 1.6 110 chr3R 11945385 intron Cad87A - chr3R 11945440 intron Cad87A - chr3R 11945495 intron Cad87A - chr3R_5_11945001 chr3R_11945001 RAL-509 1332 chr3R 12022887 12022912 chr3R 12025064 12025089 pogo 9 2176 4.0 5.0 4.5 1.6 2202 chr3R 12022887 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025089 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-509 1333 chr3R 12037331 12037343 chr3R 12037590 12037602 9 258 0.0 6.5 3.2 2.1 271 chr3R 12037331 intergenic not near genes chr3R 12037466 intergenic not near genes chr3R 12037602 intergenic not near genes chr3R_9_12035001 chr3R_12035001 RAL-509 1334 chr3R 12080865 12080894 chr3R 12080942 12080971 11 77 3.5 4.0 3.8 2.3 106 chr3R 12080865 intron CG14741 - chr3R 12080918 intron CG14741 - chr3R 12080971 intron CG14741 - chr3R_11_12080001 chr3R_12080001 RAL-509 1335 chr3R 12097241 12097273 chr3R 12097345 12097375 10 103 2.0 4.5 3.2 2.4 134 chr3R 12097241 intron dpr17 + chr3R 12097308 intron dpr17 + chr3R 12097375 intron dpr17 + chr3R_10_12095001 chr3R_12095001 RAL-509 1336 chr3R 12111898 12111923 chr3R 12111974 12111999 10 76 1.0 2.0 1.5 4.0 101 chr3R 12111898 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_10_12110001 chr3R_12110001 RAL-509 1337 chr3R 12117521 12117547 chr3R 12117909 12117936 7 385 5.0 1.5 3.2 1.7 415 chr3R 12117521 intergenic not near genes chr3R 12117728 intergenic not near genes chr3R 12117936 intergenic not near genes chr3R_7_12115001 chr3R_12115001 RAL-509 1338 chr3R 12119876 12119903 chr3R 12119972 12120000 4 96 3.5 3.0 3.2 1.0 124 chr3R 12119876 intergenic not near genes chr3R 12119938 intergenic not near genes chr3R 12120000 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-509 1339 chr3R 12359084 12359099 chr3R 12359221 12359234 7 137 5.5 3.0 4.2 1.3 150 chr3R 12359084 intergenic not near genes chr3R 12359159 intergenic not near genes chr3R 12359234 intergenic not near genes chr3R_7_12355001 chr3R_12355001 RAL-509 1340 chr3R 12398617 12398627 chr3R 12405591 12405601 7 6974 8.5 11.0 9.8 0.6 6984 chr3R 12398617 intron CG34402 + chr3R 12402109 exon CG34402 + chr3R 12405601 intron Cyp9f2 - chr3R_7_12400001 chr3R_12400001 RAL-509 1341 chr3R 12535747 12535769 chr3R 12535831 12535852 9 84 2.5 2.5 2.5 2.6 105 chr3R 12535747 intron Octbeta3R - chr3R 12535800 intron Octbeta3R - chr3R 12535852 intron Octbeta3R - chr3R_9_12535001 chr3R_12535001 RAL-509 1342 chr3R 12561993 12562020 chr3R 12562560 12562587 7 567 2.5 4.5 3.5 1.6 594 chr3R 12561993 5` UTR Octbeta2R - chr3R 12562290 5` UTR Octbeta2R - chr3R 12562587 5` UTR Octbeta2R - chr3R_7_12560001 chr3R_12560001 RAL-509 1343 chr3R 12599371 12599405 chr3R 12599454 12599457 12 79 4.0 3.0 3.5 2.7 86 chr3R 12599371 intergenic not near genes chr3R 12599414 intergenic not near genes chr3R 12599457 intergenic not near genes chr3R_12_12595001 chr3R_12595001 RAL-509 1344 chr3R 12733481 12733499 chr3R 12733557 12733576 8 76 3.0 2.0 2.5 2.3 95 chr3R 12733481 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733576 intergenic not near genes chr3R_8_12730001 chr3R_12730001 RAL-509 1345 chr3R 12833530 12833554 chr3R 12833715 12833741 9 184 2.0 4.5 3.2 2.1 211 chr3R 12833530 intergenic not near genes chr3R 12833636 intergenic not near genes chr3R 12833741 intergenic not near genes chr3R_9_12830001 chr3R_12830001 RAL-509 1346 chr3R 12864543 12864557 chr3R 12865045 12865059 roo 4 502 1.5 0.5 1.0 2.0 516 chr3R 12864543 intergenic not near genes chr3R 12864801 intergenic not near genes chr3R 12865059 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-509 1347 chr3R 12876952 12876986 chr3R 12877035 12877069 16 83 1.0 4.5 2.8 4.2 117 chr3R 12876952 intergenic not near genes chr3R 12877010 intergenic not near genes chr3R 12877069 intergenic not near genes chr3R_16_12875001 chr3R_12875001 RAL-509 1348 chr3R 12920155 12920186 chr3R 12925357 12925389 copia 11 5199 2.5 5.0 3.8 2.3 5234 chr3R 12920155 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_11_12920001 chr3R_12920001 RAL-509 1349 chr3R 13061879 13061908 chr3R 13061974 13062003 8 94 2.5 1.0 1.8 2.9 124 chr3R 13061879 intron sim + chr3R 13061941 intron sim + chr3R 13062003 intron sim + chr3R_8_13060001 chr3R_13060001 RAL-509 1350 chr3R 13067008 13067174 chr3R 13067095 13067285 5 106 2.0 1.0 1.5 2.0 277 chr3R 13067008 intron sim + chr3R 13067146 intron sim + chr3R 13067285 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-509 1351 chr3R 13073978 13074005 chr3R 13074057 13074084 10 77 1.0 2.5 1.8 3.6 106 chr3R 13073978 intron sim + chr3R 13074031 intron sim + chr3R 13074084 exon sim + chr3R_10_13070001 chr3R_13070001 RAL-509 1352 chr3R 13143040 13143065 chr3R 13148616 13148641 mdg3 6 5576 3.5 5.5 4.5 1.1 5601 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-509 1353 chr3R 13205409 13205440 chr3R 13205489 13205521 11 77 5.0 2.0 3.5 2.4 112 chr3R 13205409 intergenic not near genes chr3R 13205465 intergenic not near genes chr3R 13205521 intergenic not near genes chr3R_11_13205001 chr3R_13205001 RAL-509 1354 chr3R 13206653 13206673 chr3R 13206889 13206910 7 237 3.0 3.0 3.0 1.8 257 chr3R 13206653 intergenic not near genes chr3R 13206782 intergenic not near genes chr3R 13206910 intergenic not near genes chr3R_7_13205001 chr3R_13205001 RAL-509 1355 chr3R 13274213 13274245 chr3R 13274292 13274309 13 77 3.0 1.0 2.0 4.3 96 chr3R 13274213 intergenic not near genes chr3R 13274261 intergenic not near genes chr3R 13274309 intergenic not near genes chr3R_13_13270001 chr3R_13270001 RAL-509 1356 chr3R 13276990 13277025 chr3R 13277079 13277114 12 88 3.0 3.5 3.2 2.9 124 chr3R 13276990 intergenic not near genes chr3R 13277052 intergenic not near genes chr3R 13277114 intergenic not near genes chr3R_12_13275001 chr3R_13275001 RAL-509 1357 chr3R 13376300 13376303 chr3R 13376362 13376391 5 74 0.5 4.0 2.2 1.6 91 chr3R 13376300 intron CG9813 - chr3R 13376346 intron CG9813 - chr3R 13376391 intron CG9813 - chr3R_5_13375001 chr3R_13375001 RAL-509 1358 chr3R 13380719 13380752 chr3R 13380807 13380840 11 87 3.5 1.5 2.5 3.1 121 chr3R 13380719 exon CG8870 + chr3R 13380780 exon CG8870 + chr3R 13380840 intron CG8870 + chr3R_11_13380001 chr3R_13380001 RAL-509 1359 chr3R 13435387 13435418 chr3R 13435562 13435593 10 175 1.5 1.5 1.5 4.0 206 chr3R 13435387 intergenic yrt - chr3R 13435490 intergenic not near genes chr3R 13435593 intergenic not near genes chr3R_10_13435001 chr3R_13435001 RAL-509 1360 chr3R 13555688 13555702 chr3R 13555765 13555778 6 77 4.5 0.0 2.2 1.9 90 chr3R 13555688 intergenic not near genes chr3R 13555733 intergenic not near genes chr3R 13555778 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-509 1361 chr3R 13603062 13603360 chr3R 13603153 13603451 8 91 1.5 1.0 1.2 3.6 389 chr3R 13603062 intergenic not near genes chr3R 13603256 intergenic not near genes chr3R 13603451 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-509 1362 chr3R 13606711 13606734 chr3R 13606858 13606881 5 147 1.5 1.5 1.5 2.0 170 chr3R 13606711 intergenic CG9759 - chr3R 13606796 intergenic CG9759 - chr3R 13606881 intergenic CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-509 1363 chr3R 13712621 13712651 chr3R 13712717 13712722 5 91 2.0 2.0 2.0 1.7 101 chr3R 13712621 3` UTR CR34044 - chr3R 13712672 3` UTR CR34044 - chr3R 13712722 3` UTR CR34044 - chr3R_5_13710001 chr3R_13710001 RAL-509 1364 chr3R 13782051 13782087 chr3R 13782132 13782168 13 81 2.0 2.5 2.2 4.1 117 chr3R 13782051 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782168 intergenic CG9286 +,Dip-B + chr3R_13_13780001 chr3R_13780001 RAL-509 1365 chr3R 13828856 13828871 chr3R 13828942 13828954 4 85 2.5 0.5 1.5 1.6 98 chr3R 13828856 intergenic CR43300 + chr3R 13828905 intergenic CR43300 + chr3R 13828954 intergenic not near genes chr3R_4_13825001 chr3R_13825001 RAL-509 1366 chr3R 13850326 13850338 chr3R 13850414 13850425 4 88 0.0 4.5 2.2 1.2 99 chr3R 13850326 intergenic not near genes chr3R 13850376 intergenic not near genes chr3R 13850425 intergenic not near genes chr3R_4_13850001 chr3R_13850001 RAL-509 1367 chr3R 13863680 13863713 chr3R 13863768 13863770 14 84 2.5 3.0 2.8 3.7 90 chr3R 13863680 intergenic not near genes chr3R 13863725 intergenic not near genes chr3R 13863770 intergenic not near genes chr3R_14_13860001 chr3R_13860001 RAL-509 1368 chr3R 13994306 13994326 chr3R 13994561 13994581 9 255 2.5 1.0 1.8 3.2 275 chr3R 13994306 intron rdx - chr3R 13994444 intron rdx - chr3R 13994581 intron rdx - chr3R_9_13990001 chr3R_13990001 RAL-509 1369 chr3R 14014281 14014283 chr3R 14014413 14014415 4 132 4.0 0.0 2.0 1.3 134 chr3R 14014281 intron rdx - chr3R 14014348 intron rdx - chr3R 14014415 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-509 1370 chr3R 14117439 14117467 chr3R 14117515 14117543 11 76 2.0 2.0 2.0 3.7 104 chr3R 14117439 intron Kif19A - chr3R 14117491 intron Kif19A - chr3R 14117543 intron Kif19A - chr3R_11_14115001 chr3R_14115001 RAL-509 1371 chr3R 14180824 14180828 chr3R 14185589 14185592 F-element 4 4765 4.0 0.0 2.0 1.3 4768 chr3R 14180824 intron Dop1R1 - chr3R 14183208 intron Dop1R1 - chr3R 14185592 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-509 1372 chr3R 14246393 14246416 chr3R 14247886 14247891 jockey 7 1489 5.0 3.5 4.2 1.3 1498 chr3R 14246393 intergenic not near genes chr3R 14247142 intergenic not near genes chr3R 14247891 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-509 1373 chr3R 14294034 14294066 chr3R 14294111 14294130 4 73 0.5 2.0 1.2 1.8 96 chr3R 14294034 intron CG12207 + chr3R 14294082 intron CG12207 + chr3R 14294130 intron CG12207 + chr3R_4_14290001 chr3R_14290001 RAL-509 1374 chr3R 14327696 14327723 chr3R 14327778 14327805 7 81 1.5 3.5 2.5 2.0 109 chr3R 14327696 3` UTR CG3321 + chr3R 14327750 intergenic CG3321 +,spn-B + chr3R 14327805 intergenic CG3321 +,spn-B + chr3R_7_14325001 chr3R_14325001 RAL-509 1375 chr3R 14354815 14354841 chr3R 14354906 14354932 6 89 0.0 2.0 1.0 3.0 117 chr3R 14354815 intron NK7.1 - chr3R 14354874 intron NK7.1 - chr3R 14354932 intron NK7.1 - chr3R_6_14350001 chr3R_14350001 RAL-509 1376 chr3R 14384632 14384641 chr3R 14384708 14384731 6 87 0.0 0.0 0.0 6.0 99 chr3R 14384632 intergenic not near genes chr3R 14384682 intergenic not near genes chr3R 14384731 intergenic not near genes chr3R_6_14380001 chr3R_14380001 RAL-509 1377 chr3R 14704389 14704418 chr3R 14704465 14704495 7 77 1.5 4.5 3.0 1.8 106 chr3R 14704389 intron kibra - chr3R 14704442 intron kibra - chr3R 14704495 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-509 1378 chr3R 14759659 14759693 chr3R 14759735 14759740 12 73 4.0 3.0 3.5 2.7 81 chr3R 14759659 intron jvl + chr3R 14759700 intron jvl + chr3R 14759740 intron jvl + chr3R_12_14755001 chr3R_14755001 RAL-509 1379 chr3R 14923729 14923742 chr3R 14923806 14923819 8 77 3.0 7.0 5.0 1.3 90 chr3R 14923729 3` UTR CR45598 - chr3R 14923774 intergenic CR45598 - chr3R 14923819 intergenic CR45598 - chr3R_8_14920001 chr3R_14920001 RAL-509 1380 chr3R 15022362 15022387 chr3R 15022724 15022733 6 359 2.5 2.0 2.2 1.9 371 chr3R 15022362 intergenic not near genes chr3R 15022548 intergenic not near genes chr3R 15022733 intergenic not near genes chr3R_6_15020001 chr3R_15020001 RAL-509 1381 chr3R 15087223 15087232 chr3R 15087300 15087307 4 77 4.5 3.0 3.8 0.8 84 chr3R 15087223 intron CG6966 - chr3R 15087265 intron CG6966 - chr3R 15087307 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-509 1382 chr3R 15102502 15102511 chr3R 15109759 15109768 412 5 7257 0.5 3.0 1.8 1.8 7266 chr3R 15102502 intron CG42788 - chr3R 15106135 intron CG42788 - chr3R 15109768 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-509 1383 chr3R 15127787 15127811 chr3R 15127867 15127874 4 76 0.0 2.0 1.0 2.0 87 chr3R 15127787 intron CG42788 - chr3R 15127830 intron CG42788 - chr3R 15127874 intron CG42788 - chr3R_4_15125001 chr3R_15125001 RAL-509 1384 chr3R 15132063 15132081 chr3R 15135123 15135141 Juan 13 3060 6.0 5.5 5.8 1.9 3078 chr3R 15132063 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_13_15130001 chr3R_15130001 RAL-509 1385 chr3R 15156605 15156624 chr3R 15156686 15156705 8 80 3.0 0.0 1.5 3.2 100 chr3R 15156605 intron Gyc88E + chr3R 15156655 intron Gyc88E + chr3R 15156705 intron Gyc88E + chr3R_8_15155001 chr3R_15155001 RAL-509 1386 chr3R 15162549 15162562 chr3R 15167317 15167330 F-element 5 4768 3.0 0.0 1.5 2.0 4781 chr3R 15162549 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167330 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-509 1387 chr3R 15184534 15184552 chr3R 15184616 15184634 13 81 6.0 2.0 4.0 2.6 100 chr3R 15184534 intron Gyc88E + chr3R 15184584 intron Gyc88E + chr3R 15184634 intron Gyc88E + chr3R_13_15180001 chr3R_15180001 RAL-509 1388 chr3R 15184556 15184568 chr3R 15184638 15184650 10 81 4.0 4.5 4.2 1.9 94 chr3R 15184556 intron Gyc88E + chr3R 15184603 intron Gyc88E + chr3R 15184650 intron Gyc88E + chr3R_10_15180001 chr3R_15180001 RAL-509 1389 chr3R 15225297 15225329 chr3R 15225377 15225406 11 80 3.5 4.5 4.0 2.2 109 chr3R 15225297 5` UTR CG31344 - chr3R 15225352 intergenic CG31344 -,Caf1 + chr3R 15225406 intergenic CG31344 -,Caf1 + chr3R_11_15225001 chr3R_15225001 RAL-509 1390 chr3R 15601168 15601195 chr3R 15608690 15608717 412 16 7521 6.0 2.5 4.2 3.1 7549 chr3R 15601168 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_16_15600001 chr3R_15600001 RAL-509 1391 chr3R 15618744 15618758 chr3R 15626216 15626232 blood 9 7474 2.0 5.5 3.8 1.9 7488 chr3R 15618744 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626232 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-509 1392 chr3R 15878615 15878635 chr3R 15878687 15878709 7 77 4.0 2.5 3.2 1.7 94 chr3R 15878615 intergenic not near genes chr3R 15878662 intergenic not near genes chr3R 15878709 intergenic not near genes chr3R_7_15875001 chr3R_15875001 RAL-509 1393 chr3R 16073440 16073474 chr3R 16073544 16073578 10 102 1.5 0.0 0.8 5.6 138 chr3R 16073440 intron Mhcl - chr3R 16073509 intron Mhcl - chr3R 16073578 intron Mhcl - chr3R_10_16070001 chr3R_16070001 RAL-509 1394 chr3R 16408298 16408308 chr3R 16408455 16408464 4 157 3.5 2.5 3.0 1.0 166 chr3R 16408298 intergenic not near genes chr3R 16408381 intergenic not near genes chr3R 16408464 intergenic not near genes chr3R_4_16405001 chr3R_16405001 RAL-509 1395 chr3R 16471240 16471255 chr3R 16471338 16471352 6 97 2.5 0.5 1.5 2.4 112 chr3R 16471240 exon CSN5 + chr3R 16471296 3` UTR CSN5 + chr3R 16471352 3` UTR CSN5 + chr3R_6_16470001 chr3R_16470001 RAL-509 1396 chr3R 16732145 16732171 chr3R 16732241 16732267 5 96 2.5 2.5 2.5 1.4 122 chr3R 16732145 intron Ubx - chr3R 16732206 intron Ubx - chr3R 16732267 intron Ubx - chr3R_5_16730001 chr3R_16730001 RAL-509 1397 chr3R 16756320 16756347 chr3R 16762511 16762533 diver 9 6190 1.0 1.5 1.2 4.1 6213 chr3R 16756320 intron bxd - chr3R 16759426 intron bxd - chr3R 16762533 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-509 1398 chr3R 16860337 16860370 chr3R 16860415 16860448 8 78 0.5 0.0 0.2 6.7 111 chr3R 16860337 intron iab-8 - chr3R 16860392 intron iab-8 - chr3R 16860448 intron iab-8 - chr3R_8_16860001 chr3R_16860001 RAL-509 1399 chr3R 16921829 16921865 chr3R 16921913 16921949 6 84 2.5 0.0 1.2 2.7 120 chr3R 16921829 intron iab-8 - chr3R 16921889 intron iab-8 - chr3R 16921949 intron iab-8 - chr3R_6_16920001 chr3R_16920001 RAL-509 1400 chr3R 16996307 16996325 chr3R 16996383 16996401 4 76 3.0 2.0 2.5 1.1 94 chr3R 16996307 intergenic CG3534 +,CG17556 - chr3R 16996354 intergenic CG3534 +,CG17556 - chr3R 16996401 intergenic CG3534 +,CG17556 - chr3R_4_16995001 chr3R_16995001 RAL-509 1401 chr3R 17273970 17273999 chr3R 17274077 17274106 7 107 3.0 2.5 2.8 1.8 136 chr3R 17273970 intergenic not near genes chr3R 17274038 intergenic not near genes chr3R 17274106 intergenic not near genes chr3R_7_17270001 chr3R_17270001 RAL-509 1402 chr3R 17294671 17294702 chr3R 17295099 17295130 BS 8 428 1.5 4.5 3.0 2.0 459 chr3R 17294671 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_8_17290001 chr3R_17290001 RAL-509 1403 chr3R 17346690 17346720 chr3R 17348253 17348283 F-element 6 1563 2.0 4.0 3.0 1.5 1593 chr3R 17346690 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348283 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-509 1404 chr3R 17461204 17461230 chr3R 17461286 17461312 9 82 1.0 1.5 1.2 4.1 108 chr3R 17461204 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_9_17460001 chr3R_17460001 RAL-509 1405 chr3R 17497964 17497984 chr3R 17498050 17498070 4 86 2.0 1.0 1.5 1.6 106 chr3R 17497964 intron Dscam3 - chr3R 17498017 intron Dscam3 - chr3R 17498070 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-509 1406 chr3R 17500631 17500641 chr3R 17501191 17501202 4 559 1.0 3.0 2.0 1.3 571 chr3R 17500631 intron Dscam3 - chr3R 17500916 intron Dscam3 - chr3R 17501202 intron Dscam3 - chr3R_4_17500001 chr3R_17500001 RAL-509 1407 chr3R 17521572 17521587 chr3R 17521732 17521745 4 159 1.5 6.5 4.0 0.8 173 chr3R 17521572 intergenic not near genes chr3R 17521658 intergenic not near genes chr3R 17521745 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-509 1408 chr3R 17524925 17524931 chr3R 17524997 17525011 4 77 0.0 1.5 0.8 2.2 86 chr3R 17524925 intergenic not near genes chr3R 17524968 intergenic not near genes chr3R 17525011 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-509 1409 chr3R 17591288 17591321 chr3R 17591724 17591743 F-element 9 431 4.0 5.0 4.5 1.6 455 chr3R 17591288 intergenic not near genes chr3R 17591516 intergenic not near genes chr3R 17591743 intergenic not near genes chr3R_9_17590001 chr3R_17590001 RAL-509 1410 chr3R 17637050 17637064 chr3R 17637207 17637220 4 158 1.5 4.0 2.8 1.1 170 chr3R 17637050 intron CG43175 + chr3R 17637135 intron CG43175 + chr3R 17637220 intron CG43175 + chr3R_4_17635001 chr3R_17635001 RAL-509 1411 chr3R 17638317 17638338 chr3R 17638803 17638824 roo 5 486 0.5 3.5 2.0 1.7 507 chr3R 17638317 intron CG43175 + chr3R 17638570 intron CG43175 + chr3R 17638824 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-509 1412 chr3R 17645704 17645718 chr3R 17645834 17645848 5 130 1.5 1.5 1.5 2.0 144 chr3R 17645704 intergenic CG43175 + chr3R 17645776 intergenic not near genes chr3R 17645848 intergenic not near genes chr3R_5_17645001 chr3R_17645001 RAL-509 1413 chr3R 17811203 17811222 chr3R 17811283 17811301 4 80 1.5 0.0 0.8 2.2 98 chr3R 17811203 intergenic CG18012 -,tinc + chr3R 17811252 intergenic CG18012 -,tinc + chr3R 17811301 intergenic CG18012 -,tinc + chr3R_4_17810001 chr3R_17810001 RAL-509 1414 chr3R 17913134 17913147 chr3R 17913229 17913242 5 95 2.5 3.0 2.8 1.3 108 chr3R 17913134 intron Rim - chr3R 17913188 intron Rim - chr3R 17913242 intron Rim - chr3R_5_17910001 chr3R_17910001 RAL-509 1415 chr3R 17925862 17925888 chr3R 17927328 17927355 hobo 9 1466 3.0 7.0 5.0 1.5 1493 chr3R 17925862 intron cpo + chr3R 17926608 intron cpo + chr3R 17927355 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-509 1416 chr3R 17960397 17960407 chr3R 17960773 17960782 5 376 5.5 2.0 3.8 1.0 385 chr3R 17960397 intron cpo + chr3R 17960590 intron cpo + chr3R 17960782 intron cpo + chr3R_5_17960001 chr3R_17960001 RAL-509 1417 chr3R 17983219 17983233 chr3R 17983295 17983309 4 76 5.0 1.0 3.0 1.0 90 chr3R 17983219 intron cpo + chr3R 17983264 intron cpo + chr3R 17983309 intron cpo + chr3R_4_17980001 chr3R_17980001 RAL-509 1418 chr3R 18025339 18025364 chr3R 18025420 18025445 7 81 5.0 2.0 3.5 1.6 106 chr3R 18025339 3` UTR CG7794 + chr3R 18025392 intergenic CG7794 + chr3R 18025445 intergenic CG7794 + chr3R_7_18025001 chr3R_18025001 RAL-509 1419 chr3R 18058398 18058416 chr3R 18058501 18058511 4 102 2.5 1.5 2.0 1.3 113 chr3R 18058398 intergenic not near genes chr3R 18058454 intergenic not near genes chr3R 18058511 intergenic not near genes chr3R_4_18055001 chr3R_18055001 RAL-509 1420 chr3R 18112372 18112390 chr3R 18112455 18112473 4 83 3.0 2.0 2.5 1.1 101 chr3R 18112372 intron sr + chr3R 18112422 intron sr + chr3R 18112473 intron sr + chr3R_4_18110001 chr3R_18110001 RAL-509 1421 chr3R 18126210 18126220 chr3R 18126288 18126299 4 79 5.5 5.0 5.2 0.6 89 chr3R 18126210 intron sr + chr3R 18126254 intron sr + chr3R 18126299 intron sr + chr3R_4_18125001 chr3R_18125001 RAL-509 1422 chr3R 18615376 18615398 chr3R 18615465 18615483 5 88 0.0 1.0 0.5 3.3 107 chr3R 18615376 intron,intron qin +,CG14304 - chr3R 18615430 intron,intron qin +,CG14304 - chr3R 18615483 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-509 1423 chr3R 18635201 18635220 chr3R 18635303 18635322 7 102 5.0 1.0 3.0 1.8 121 chr3R 18635201 intron,intron qin +,CG14301 - chr3R 18635262 intron,intron qin +,CG14301 - chr3R 18635322 intron,intron qin +,CG14301 - chr3R_7_18635001 chr3R_18635001 RAL-509 1424 chr3R 18695760 18695773 chr3R 18695845 18695858 4 85 3.0 0.0 1.5 1.6 98 chr3R 18695760 3` UTR CG34282 + chr3R 18695809 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-509 1425 chr3R 18703293 18703303 chr3R 18703401 18703411 5 108 1.0 0.0 0.5 3.3 118 chr3R 18703293 intergenic not near genes chr3R 18703352 intergenic not near genes chr3R 18703411 intergenic not near genes chr3R_5_18700001 chr3R_18700001 RAL-509 1426 chr3R 18730024 18730033 chr3R 18730100 18730109 6 76 3.0 3.0 3.0 1.5 85 chr3R 18730024 intron Cha + chr3R 18730066 intron Cha + chr3R 18730109 exon Cha + chr3R_6_18730001 chr3R_18730001 RAL-509 1427 chr3R 18781696 18781723 chr3R 18781772 18781778 5 72 6.5 4.0 5.2 0.8 82 chr3R 18781696 intron CG7720 - chr3R 18781737 intron CG7720 - chr3R 18781778 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-509 1428 chr3R 18812081 18812105 chr3R 18812159 18812183 11 77 4.0 3.0 3.5 2.4 102 chr3R 18812081 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812183 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-509 1429 chr3R 18817518 18817539 chr3R 18817616 18817637 6 98 1.5 2.0 1.8 2.1 119 chr3R 18817518 intron CG18208 - chr3R 18817578 intron CG18208 - chr3R 18817637 intron CG18208 - chr3R_6_18815001 chr3R_18815001 RAL-509 1430 chr3R 18839815 18839838 chr3R 18839896 18839922 8 82 2.0 3.5 2.8 2.1 107 chr3R 18839815 intron CG18208 - chr3R 18839868 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_8_18835001 chr3R_18835001 RAL-509 1431 chr3R 18915946 18915974 chr3R 18916094 18916128 16 153 3.0 2.0 2.5 4.6 182 chr3R 18915946 intron Xrp1 + chr3R 18916037 intron Xrp1 + chr3R 18916128 intron Xrp1 + chr3R_16_18915001 chr3R_18915001 RAL-509 1432 chr3R 19106821 19106828 chr3R 19106911 19106918 4 90 9.5 0.5 5.0 0.7 97 chr3R 19106821 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106918 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-509 1433 chr3R 19113000 19113029 chr3R 19113106 19113135 8 105 2.0 0.5 1.2 3.6 135 chr3R 19113000 intron CG6040 + chr3R 19113068 intron CG6040 + chr3R 19113135 intron CG6040 + chr3R_8_19110001 chr3R_19110001 RAL-509 1434 chr3R 19201280 19201305 chr3R 19201367 19201392 7 86 1.5 3.0 2.2 2.2 112 chr3R 19201280 intergenic CG31475 + chr3R 19201336 intergenic CG31475 + chr3R 19201392 intergenic CG31475 + chr3R_7_19200001 chr3R_19200001 RAL-509 1435 chr3R 19517928 19517957 chr3R 19518089 19518118 13 160 1.0 7.5 4.2 2.5 190 chr3R 19517928 intron Dys + chr3R 19518023 intron Dys + chr3R 19518118 intron Dys + chr3R_13_19515001 chr3R_19515001 RAL-509 1436 chr3R 19604677 19604706 chr3R 19604809 19604836 18 132 2.5 5.0 3.8 3.8 159 chr3R 19604677 exon CG7342 + chr3R 19604756 intron CG7342 + chr3R 19604836 intron CG7342 + chr3R_18_19600001 chr3R_19600001 RAL-509 1437 chr3R 19611995 19612015 chr3R 19616028 19616049 4 4034 13.0 13.5 13.2 0.3 4054 chr3R 19611995 exon CG17752 + chr3R 19614022 exon CG16727 + chr3R 19616049 3` UTR CG6231 - chr3R_4_19610001 chr3R_19610001 RAL-509 1438 chr3R 19681607 19681633 chr3R 19681697 19681723 7 91 2.0 3.5 2.8 1.8 116 chr3R 19681607 intron Naam + chr3R 19681665 intron Naam + chr3R 19681723 intron Naam + chr3R_7_19680001 chr3R_19680001 RAL-509 1439 chr3R 19683252 19683269 chr3R 19683405 19683422 8 153 5.5 1.0 3.2 1.9 170 chr3R 19683252 intron Naam + chr3R 19683337 intron Naam + chr3R 19683422 intron Naam + chr3R_8_19680001 chr3R_19680001 RAL-509 1440 chr3R 19702320 19702350 chr3R 19702401 19702432 12 82 5.5 2.0 3.8 2.5 112 chr3R 19702320 intergenic not near genes chr3R 19702376 intergenic not near genes chr3R 19702432 intergenic not near genes chr3R_12_19700001 chr3R_19700001 RAL-509 1441 chr3R 19716214 19716247 chr3R 19716291 19716324 5 77 3.5 0.0 1.8 1.8 110 chr3R 19716214 intergenic CG34286 - chr3R 19716269 intergenic CG34286 - chr3R 19716324 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-509 1442 chr3R 19839528 19839562 chr3R 19839760 19839789 14 229 1.5 1.0 1.2 6.4 261 chr3R 19839528 intergenic not near genes chr3R 19839658 intergenic not near genes chr3R 19839789 intergenic not near genes chr3R_14_19835001 chr3R_19835001 RAL-509 1443 chr3R 19953958 19953969 chr3R 19954032 19954046 8 74 5.5 4.5 5.0 1.3 88 chr3R 19953958 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954046 intron Hs6st - chr3R_8_19950001 chr3R_19950001 RAL-509 1444 chr3R 19953970 19953983 chr3R 19954026 19954033 4 65 3.5 3.5 3.5 0.9 63 chr3R 19953970 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954033 intron Hs6st - chr3R_4_19950001 chr3R_19950001 RAL-509 1445 chr3R 19963640 19963831 chr3R 19963726 19963950 5 106 3.0 1.0 2.0 1.7 310 chr3R 19963640 intron Hs6st - chr3R 19963795 intron Hs6st - chr3R 19963950 intron Hs6st - chr3R_5_19960001 chr3R_19960001 RAL-509 1446 chr3R 19970666 19970698 chr3R 19971020 19971052 5 354 1.0 1.0 1.0 2.5 386 chr3R 19970666 intron Hs6st - chr3R 19970859 intron Hs6st - chr3R 19971052 intron Hs6st - chr3R_5_19970001 chr3R_19970001 RAL-509 1447 chr3R 20109537 20109571 chr3R 20114743 20114777 copia 5 5206 0.5 3.0 1.8 1.8 5240 chr3R 20109537 intergenic not near genes chr3R 20112157 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-509 1448 chr3R 20118019 20118212 chr3R 20118105 20118295 14 84 2.5 4.5 3.5 3.1 276 chr3R 20118019 intergenic not near genes chr3R 20118157 intergenic not near genes chr3R 20118295 intergenic not near genes chr3R_14_20115001 chr3R_20115001 RAL-509 1449 chr3R 20146315 20146336 chr3R 20146636 20146657 10 320 3.5 3.5 3.5 2.2 342 chr3R 20146315 intergenic not near genes chr3R 20146486 intergenic not near genes chr3R 20146657 intergenic not near genes chr3R_10_20145001 chr3R_20145001 RAL-509 1450 chr3R 20156704 20156724 chr3R 20165858 20165894 roo 9 9167 3.0 5.0 4.0 1.8 9190 chr3R 20156704 intergenic not near genes chr3R 20161299 intergenic not near genes chr3R 20165894 intergenic not near genes chr3R_9_20160001 chr3R_20160001 RAL-509 1451 chr3R 20256856 20256869 chr3R 20256934 20256947 4 78 0.0 4.0 2.0 1.3 91 chr3R 20256856 intron cic + chr3R 20256902 intron cic + chr3R 20256947 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-509 1452 chr3R 20282277 20282301 chr3R 20282353 20282377 4 76 0.0 1.0 0.5 2.7 100 chr3R 20282277 intron cic + chr3R 20282327 intron cic + chr3R 20282377 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-509 1453 chr3R 20330999 20331019 chr3R 20331485 20331505 roo 4 486 0.5 2.0 1.2 1.8 506 chr3R 20330999 intergenic Sirt2 + chr3R 20331252 intergenic Sirt2 + chr3R 20331505 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-509 1454 chr3R 20499871 20499897 chr3R 20499961 20499987 8 90 3.0 2.0 2.5 2.3 116 chr3R 20499871 intergenic Dic2 - chr3R 20499929 intergenic Dic2 - chr3R 20499987 intergenic Dic2 - chr3R_8_20495001 chr3R_20495001 RAL-509 1455 chr3R 20513002 20513030 chr3R 20515705 20515733 opus 5 2703 1.5 1.0 1.2 2.3 2731 chr3R 20513002 intergenic not near genes chr3R 20514368 intergenic not near genes chr3R 20515733 intergenic not near genes chr3R_5_20510001 chr3R_20510001 RAL-509 1456 chr3R 20564126 20564150 chr3R 20564478 20564503 11 353 4.0 4.5 4.2 2.1 377 chr3R 20564126 intron CG5191 + chr3R 20564314 intron CG5191 + chr3R 20564503 intron CG5191 + chr3R_11_20560001 chr3R_20560001 RAL-509 1457 chr3R 20594482 20594512 chr3R 20594572 20594602 6 90 2.5 0.0 1.2 2.7 120 chr3R 20594482 intron bon + chr3R 20594542 intron bon + chr3R 20594602 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-509 1458 chr3R 20596194 20596201 chr3R 20596281 20596288 5 87 2.5 3.5 3.0 1.2 94 chr3R 20596194 intron bon + chr3R 20596241 intron bon + chr3R 20596288 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-509 1459 chr3R 20703483 20703497 chr3R 20703877 20703891 7 394 1.0 0.5 0.8 3.9 408 chr3R 20703483 intron Oamb - chr3R 20703687 intron Oamb - chr3R 20703891 intron Oamb - chr3R_7_20700001 chr3R_20700001 RAL-509 1460 chr3R 20706699 20706722 chr3R 20707076 20707106 4 382 1.5 7.0 4.2 0.8 407 chr3R 20706699 intron Oamb - chr3R 20706902 intron Oamb - chr3R 20707106 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-509 1461 chr3R 20716815 20716842 chr3R 20717149 20717179 6 336 3.0 4.0 3.5 1.3 364 chr3R 20716815 intergenic not near genes chr3R 20716997 intergenic not near genes chr3R 20717179 intergenic not near genes chr3R_6_20715001 chr3R_20715001 RAL-509 1462 chr3R 20771704 20771719 chr3R 20771785 20771800 5 81 0.0 4.0 2.0 1.7 96 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771800 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-509 1463 chr3R 20787440 20787457 chr3R 20787531 20787545 4 90 4.5 5.5 5.0 0.7 105 chr3R 20787440 intron Syp + chr3R 20787492 intron Syp + chr3R 20787545 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-509 1464 chr3R 20841567 20841600 chr3R 20841727 20841763 11 162 5.5 2.5 4.0 2.2 196 chr3R 20841567 intergenic not near genes chr3R 20841665 intergenic CG15695 + chr3R 20841763 intergenic CG15695 + chr3R_11_20840001 chr3R_20840001 RAL-509 1465 chr3R 20847773 20847805 chr3R 20848010 20848042 8 237 2.0 0.5 1.2 3.6 269 chr3R 20847773 intergenic CG15696 + chr3R 20847908 intergenic CG15696 + chr3R 20848042 intergenic CG15696 + chr3R_8_20845001 chr3R_20845001 RAL-509 1466 chr3R 20854472 20854511 chr3R 20859267 20859294 Doc 6 4779 3.5 1.5 2.5 1.7 4822 chr3R 20854472 intron Ir93a - chr3R 20856883 intron Ir93a - chr3R 20859294 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-509 1467 chr3R 20870254 20870275 chr3R 20870338 20870360 8 84 2.0 4.5 3.2 1.9 106 chr3R 20870254 intergenic not near genes chr3R 20870307 intergenic not near genes chr3R 20870360 intergenic not near genes chr3R_8_20870001 chr3R_20870001 RAL-509 1468 chr3R 20870276 20870284 chr3R 20870335 20870368 6 80 1.5 4.5 3.0 1.5 92 chr3R 20870276 intergenic not near genes chr3R 20870322 intergenic not near genes chr3R 20870368 intergenic not near genes chr3R_6_20870001 chr3R_20870001 RAL-509 1469 chr3R 20901654 20901682 chr3R 20901757 20901785 15 102 2.5 3.0 2.8 3.9 131 chr3R 20901654 intergenic CG5621 + chr3R 20901720 intergenic CG5621 + chr3R 20901785 intergenic CG5621 + chr3R_15_20900001 chr3R_20900001 RAL-509 1470 chr3R 20942810 20942843 chr3R 20942886 20942919 7 73 2.5 1.5 2.0 2.3 109 chr3R 20942810 intron CG31191 - chr3R 20942864 intron CG31191 - chr3R 20942919 intron CG31191 - chr3R_7_20940001 chr3R_20940001 RAL-509 1471 chr3R 21108041 21108066 chr3R 21108300 21108327 6 261 1.5 1.5 1.5 2.4 286 chr3R 21108041 intergenic Sec15 -,rtet + chr3R 21108184 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-509 1472 chr3R 21141698 21141706 chr3R 21150159 21150166 Tirant 6 8467 1.0 3.0 2.0 2.0 8468 chr3R 21141698 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150166 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-509 1473 chr3R 21252691 21252725 chr3R 21252790 21252824 8 97 1.0 3.0 2.0 2.7 133 chr3R 21252691 intron ETHR + chr3R 21252758 intron ETHR + chr3R 21252824 intron ETHR + chr3R_8_21250001 chr3R_21250001 RAL-509 1474 chr3R 21383280 21383293 chr3R 21383360 21383373 4 80 0.5 1.5 1.0 2.0 93 chr3R 21383280 intergenic not near genes chr3R 21383326 intergenic not near genes chr3R 21383373 intergenic not near genes chr3R_4_21380001 chr3R_21380001 RAL-509 1475 chr3R 21385693 21385953 chr3R 21385775 21386021 10 78 2.0 0.0 1.0 5.0 328 chr3R 21385693 intergenic not near genes chr3R 21385857 intergenic not near genes chr3R 21386021 intergenic not near genes chr3R_10_21385001 chr3R_21385001 RAL-509 1476 chr3R 21464402 21464418 chr3R 21464488 21464502 4 86 2.0 0.5 1.2 1.8 100 chr3R 21464402 intergenic not near genes chr3R 21464452 intergenic not near genes chr3R 21464502 intergenic not near genes chr3R_4_21460001 chr3R_21460001 RAL-509 1477 chr3R 21472270 21472287 chr3R 21472453 21472471 4 184 1.5 5.0 3.2 1.0 201 chr3R 21472270 intergenic not near genes chr3R 21472370 intergenic not near genes chr3R 21472471 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-509 1478 chr3R 21518257 21518268 chr3R 21518341 21518352 5 83 0.0 2.5 1.2 2.3 95 chr3R 21518257 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518352 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-509 1479 chr3R 21758684 21758702 chr3R 21758765 21758782 6 81 6.0 6.5 6.2 0.8 98 chr3R 21758684 intergenic CG42335 + chr3R 21758733 intergenic CG42335 + chr3R 21758782 exon CG42335 + chr3R_6_21755001 chr3R_21755001 RAL-509 1480 chr3R 21761119 21761153 chr3R 21768511 21768534 mdg1 9 7387 4.5 3.0 3.8 1.9 7415 chr3R 21761119 exon CG42335 + chr3R 21764826 intron CG42335 + chr3R 21768534 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-509 1481 chr3R 21907534 21907534 chr3R 28831801 28831802 4 6924268 21.5 18.5 20.0 0.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-509 1482 chr3R 21907535 21907535 chr3R 28831801 28831802 7 6924266 21.5 18.5 20.0 0.3 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_7_25365001 chr3R_25365001 RAL-509 1483 chr3R 21907536 21907536 chr3R 28831801 28831802 11 6924266 21.5 18.5 20.0 0.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-509 1484 chr3R 22055567 22055589 chr3R 22055750 22055773 12 188 2.5 5.5 4.0 2.4 206 chr3R 22055567 intron how + chr3R 22055670 intron how + chr3R 22055773 intron how + chr3R_12_22055001 chr3R_22055001 RAL-509 1485 chr3R 22234684 22234712 chr3R 22236003 22236027 pogo 5 1318 1.0 1.0 1.0 2.5 1343 chr3R 22234684 intron SKIP + chr3R 22235356 intron SKIP + chr3R 22236027 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-509 1486 chr3R 22239493 22239524 chr3R 22248551 22248584 roo 10 9059 1.0 2.5 1.8 3.6 9091 chr3R 22239493 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248584 intron SKIP + chr3R_10_22240001 chr3R_22240001 RAL-509 1487 chr3R 22310583 22310590 chr3R 22310676 22310683 4 93 2.5 0.5 1.5 1.6 100 chr3R 22310583 3` UTR CG34377 - chr3R 22310633 3` UTR CG34377 - chr3R 22310683 3` UTR CG34377 - chr3R_4_22310001 chr3R_22310001 RAL-509 1488 chr3R 22450548 22450574 chr3R 22453182 22453214 NOF 10 2638 1.5 6.0 3.8 2.1 2666 chr3R 22450548 intron CG34376 + chr3R 22451881 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-509 1489 chr3R 22534385 22534415 chr3R 22534478 22534510 10 91 2.0 2.0 2.0 3.3 125 chr3R 22534385 intron CG5326 - chr3R 22534448 intron CG5326 - chr3R 22534510 intron CG5326 - chr3R_10_22530001 chr3R_22530001 RAL-509 1490 chr3R 22648332 22648358 chr3R 22648411 22648437 10 79 4.5 0.0 2.2 3.1 105 chr3R 22648332 intron wake + chr3R 22648384 intron wake + chr3R 22648437 intron wake + chr3R_10_22645001 chr3R_22645001 RAL-509 1491 chr3R 22657710 22657743 chr3R 22657795 22657827 4 85 0.0 0.0 0.0 4.0 117 chr3R 22657710 intron wake + chr3R 22657768 intron wake + chr3R 22657827 intron wake + chr3R_4_22655001 chr3R_22655001 RAL-509 1492 chr3R 22769090 22769122 chr3R 22769167 22769198 12 76 3.0 3.0 3.0 3.0 108 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_12_22765001 chr3R_22765001 RAL-509 1493 chr3R 22825518 22825534 chr3R 22825591 22825623 5 74 5.0 0.0 2.5 1.4 105 chr3R 22825518 3` UTR CR44350 - chr3R 22825570 3` UTR CR44350 - chr3R 22825623 3` UTR CR44350 - chr3R_5_22825001 chr3R_22825001 RAL-509 1494 chr3R 22850116 22850145 chr3R 22851247 22851276 13 1131 19.0 15.5 17.2 0.7 1160 chr3R 22850116 intergenic not near genes chr3R 22850696 intergenic CR43846 - chr3R 22851276 3` UTR CR43846 - chr3R_13_22850001 chr3R_22850001 RAL-509 1495 chr3R 22849781 22849800 chr3R 22851443 22851468 12 1663 20.5 4.0 12.2 0.9 1687 chr3R 22849781 intergenic not near genes chr3R 22850624 intergenic CR43846 - chr3R 22851468 3` UTR CR43846 - chr3R_12_22850001 chr3R_22850001 RAL-509 1496 chr3R 22860159 22860176 chr3R 22860251 22860268 6 92 1.5 2.0 1.8 2.1 109 chr3R 22860159 intergenic not near genes chr3R 22860214 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-509 1497 chr3R 22880936 22880959 chr3R 22881074 22881097 4 138 4.0 1.0 2.5 1.1 161 chr3R 22880936 intergenic not near genes chr3R 22881016 intergenic not near genes chr3R 22881097 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-509 1498 chr3R 22919160 22919187 chr3R 22919256 22919277 8 95 1.0 3.0 2.0 2.7 117 chr3R 22919160 intron klg + chr3R 22919218 intron klg + chr3R 22919277 intron klg + chr3R_8_22915001 chr3R_22915001 RAL-509 1499 chr3R 22965147 22965154 chr3R 22965233 22965238 5 85 6.5 1.5 4.0 1.0 91 chr3R 22965147 intergenic not near genes chr3R 22965192 intergenic not near genes chr3R 22965238 intergenic not near genes chr3R_5_22965001 chr3R_22965001 RAL-509 1500 chr3R 23064172 23064205 chr3R 23064281 23064314 14 107 5.5 2.0 3.8 2.9 142 chr3R 23064172 exon CG17111 - chr3R 23064243 intron CG17111 - chr3R 23064314 exon CG17111 - chr3R_14_23060001 chr3R_23060001 RAL-509 1501 chr3R 23064888 23064903 chr3R 23064979 23064994 5 91 0.0 3.5 1.8 1.8 106 chr3R 23064888 intron CG17111 - chr3R 23064941 intron CG17111 - chr3R 23064994 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-509 1502 chr3R 23073655 23073689 chr3R 23073743 23073778 9 86 2.5 1.5 2.0 3.0 123 chr3R 23073655 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-509 1503 chr3R 23085595 23085602 chr3R 23085710 23085717 4 115 2.5 10.0 6.2 0.6 122 chr3R 23085595 intron CG13830 - chr3R 23085656 intron CG13830 - chr3R 23085717 intron CG13830 - chr3R_4_23085001 chr3R_23085001 RAL-509 1504 chr3R 23338911 23338918 chr3R 23338970 23338993 4 70 4.5 4.0 4.2 0.8 82 chr3R 23338911 intron pnt - chr3R 23338952 intron pnt - chr3R 23338993 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-509 1505 chr3R 23431078 23431103 chr3R 23431152 23431178 8 74 1.5 2.0 1.8 2.9 100 chr3R 23431078 intron CG4374 - chr3R 23431128 intron CG4374 - chr3R 23431178 intron CG4374 - chr3R_8_23430001 chr3R_23430001 RAL-509 1506 chr3R 23558400 23558423 chr3R 23560181 23560204 Bari1 9 1781 2.0 2.5 2.2 2.8 1804 chr3R 23558400 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560204 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-509 1507 chr3R 23624324 23624351 chr3R 23624417 23624444 10 92 2.5 3.5 3.0 2.5 120 chr3R 23624324 intron CG31145 - chr3R 23624384 intron CG31145 - chr3R 23624444 intron CG31145 - chr3R_10_23620001 chr3R_23620001 RAL-509 1508 chr3R 23684699 23684721 chr3R 23685184 23685189 roo 6 482 1.5 5.0 3.2 1.4 490 chr3R 23684699 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685189 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-509 1509 chr3R 23688485 23688504 chr3R 23688566 23688594 6 86 5.5 6.5 6.0 0.9 109 chr3R 23688485 intergenic SPE + chr3R 23688540 intergenic SPE +,CG10254 - chr3R 23688594 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-509 1510 chr3R 23938675 23938699 chr3R 23939107 23939131 7 430 1.5 2.0 1.8 2.5 456 chr3R 23938675 intron Gdh - chr3R 23938903 intron Gdh - chr3R 23939131 intron Gdh - chr3R_7_23935001 chr3R_23935001 RAL-509 1511 chr3R 23944918 23944936 chr3R 23945003 23945021 9 85 4.5 6.5 5.5 1.4 103 chr3R 23944918 intron CG12268 - chr3R 23944970 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-509 1512 chr3R 23949040 23949068 chr3R 23949117 23949145 7 77 2.0 2.0 2.0 2.3 105 chr3R 23949040 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949145 intergenic not near genes chr3R_7_23945001 chr3R_23945001 RAL-509 1513 chr3R 24001595 24001615 chr3R 24001682 24001701 10 87 3.0 4.0 3.5 2.2 106 chr3R 24001595 intron KrT95D - chr3R 24001648 intron KrT95D - chr3R 24001701 intron KrT95D - chr3R_10_24000001 chr3R_24000001 RAL-509 1514 chr3R 24015060 24015096 chr3R 24015136 24015159 8 72 1.0 0.5 0.8 4.4 99 chr3R 24015060 intron KrT95D - chr3R 24015110 intron KrT95D - chr3R 24015159 intron KrT95D - chr3R_8_24015001 chr3R_24015001 RAL-509 1515 chr3R 24072090 24072103 chr3R 24072527 24072541 jockey 7 437 6.5 4.5 5.5 1.1 451 chr3R 24072090 intron 4EHP - chr3R 24072316 intron 4EHP - chr3R 24072541 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-509 1516 chr3R 24076912 24076949 chr3R 24078379 24078390 hobo 7 1463 5.0 3.5 4.2 1.3 1478 chr3R 24076912 intron 4EHP - chr3R 24077651 intron 4EHP - chr3R 24078390 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-509 1517 chr3R 24207219 24207234 chr3R 24212295 24212310 flea 8 5076 13.0 6.0 9.5 0.8 5091 chr3R 24207219 intron twin - chr3R 24209764 intron twin - chr3R 24212310 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-509 1518 chr3R 24284818 24284840 chr3R 24285028 24285050 12 210 2.0 2.5 2.2 3.8 232 chr3R 24284818 exon CG6356 + chr3R 24284934 intron CG6356 + chr3R 24285050 intron CG6356 + chr3R_12_24280001 chr3R_24280001 RAL-509 1519 chr3R 24295963 24295994 chr3R 24296080 24296111 11 117 3.0 4.0 3.5 2.4 148 chr3R 24295963 intron crb + chr3R 24296037 intron crb + chr3R 24296111 intron crb + chr3R_11_24295001 chr3R_24295001 RAL-509 1520 chr3R 24431604 24431626 chr3R 24431683 24431704 4 78 2.5 1.0 1.8 1.4 100 chr3R 24431604 intron nAChRalpha1 - chr3R 24431654 intron nAChRalpha1 - chr3R 24431704 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-509 1521 chr3R 24433477 24433505 chr3R 24433556 24433583 9 79 0.5 2.0 1.2 4.1 106 chr3R 24433477 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433583 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-509 1522 chr3R 24434986 24435016 chr3R 24435079 24435109 11 93 3.0 2.5 2.8 2.9 123 chr3R 24434986 intron nAChRalpha1 - chr3R 24435048 intron nAChRalpha1 - chr3R 24435109 intron nAChRalpha1 - chr3R_11_24435001 chr3R_24435001 RAL-509 1523 chr3R 24441396 24441419 chr3R 24441486 24441494 5 86 2.5 5.0 3.8 1.0 98 chr3R 24441396 intron nAChRalpha1 - chr3R 24441445 intron nAChRalpha1 - chr3R 24441494 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-509 1524 chr3R 24493274 24493302 chr3R 24493503 24493531 BS 6 228 2.0 5.0 3.5 1.3 257 chr3R 24493274 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493531 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-509 1525 chr3R 24624375 24624393 chr3R 24624464 24624482 6 89 0.5 1.5 1.0 3.0 107 chr3R 24624375 intron Syx18 - chr3R 24624428 intron Syx18 - chr3R 24624482 exon Syx18 - chr3R_6_24620001 chr3R_24620001 RAL-509 1526 chr3R 24730091 24730119 chr3R 24732469 24732497 Doc 5 2373 2.0 0.5 1.2 2.3 2406 chr3R 24730091 intron tok + chr3R 24731294 intron tok + chr3R 24732497 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-509 1527 chr3R 24927134 24927152 chr3R 24931922 24931943 Doc 7 4791 1.5 1.5 1.5 2.8 4809 chr3R 24927134 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-509 1528 chr3R 24973951 24973984 chr3R 24974027 24974058 13 74 6.5 4.0 5.2 2.1 107 chr3R 24973951 intergenic not near genes chr3R 24974004 intergenic not near genes chr3R 24974058 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-509 1529 chr3R 25004900 25004918 chr3R 25004983 25005001 10 83 0.0 2.5 1.2 4.5 101 chr3R 25004900 intron tnc + chr3R 25004950 intron tnc + chr3R 25005001 intron tnc + chr3R_10_25000001 chr3R_25000001 RAL-509 1530 chr3R 25166372 25166380 chr3R 25166448 25166456 5 76 2.5 1.0 1.8 1.8 84 chr3R 25166372 intergenic not near genes chr3R 25166414 intergenic not near genes chr3R 25166456 intergenic not near genes chr3R_5_25165001 chr3R_25165001 RAL-509 1531 chr3R 25269651 25269678 chr3R 25269904 25269931 8 253 5.0 3.0 4.0 1.6 280 chr3R 25269651 intron CR45214 - chr3R 25269791 intron CR45214 - chr3R 25269931 3` UTR CR45214 - chr3R_8_25265001 chr3R_25265001 RAL-509 1532 chr3R 25288267 25288293 chr3R 25288523 25288551 10 258 2.5 6.0 4.2 1.9 284 chr3R 25288267 exon CG13658 + chr3R 25288409 exon CG13658 + chr3R 25288551 exon CG13658 + chr3R_10_25285001 chr3R_25285001 RAL-509 1533 chr3R 25368476 25368503 chr3R 25368594 25368621 7 118 1.0 0.0 0.5 4.7 145 chr3R 25368476 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368621 intron Fur1 - chr3R_7_25365001 chr3R_25365001 RAL-509 1534 chr3R 25422068 25422097 chr3R 25422149 25422178 8 81 1.0 0.0 0.5 5.3 110 chr3R 25422068 intron Fur1 - chr3R 25422123 intron Fur1 - chr3R 25422178 intron Fur1 - chr3R_8_25420001 chr3R_25420001 RAL-509 1535 chr3R 25454894 25454917 chr3R 25454983 25455007 4 82 0.5 1.5 1.0 2.0 113 chr3R 25454894 intron Fur1 - chr3R 25454950 intron Fur1 - chr3R 25455007 intron Fur1 - chr3R_4_25450001 chr3R_25450001 RAL-509 1536 chr3R 25576840 25576866 chr3R 25576939 25576962 5 98 2.5 5.5 4.0 1.0 122 chr3R 25576840 intron msi + chr3R 25576901 intron msi + chr3R 25576962 intron msi + chr3R_5_25575001 chr3R_25575001 RAL-509 1537 chr3R 25658761 25658777 chr3R 25658840 25658856 7 79 6.5 5.0 5.8 1.0 95 chr3R 25658761 intron Tnks - chr3R 25658808 intron Tnks - chr3R 25658856 intron Tnks - chr3R_7_25655001 chr3R_25655001 RAL-509 1538 chr3R 25658780 25658792 chr3R 25658838 25658871 7 76 4.0 3.5 3.8 1.5 91 chr3R 25658780 intron Tnks - chr3R 25658826 intron Tnks - chr3R 25658871 intron Tnks - chr3R_7_25655001 chr3R_25655001 RAL-509 1539 chr3R 25682537 25682571 chr3R 25682678 25682713 12 141 4.0 4.0 4.0 2.4 176 chr3R 25682537 intron CG5028 + chr3R 25682625 intron CG5028 + chr3R 25682713 intron CG5028 + chr3R_12_25680001 chr3R_25680001 RAL-509 1540 chr3R 25738631 25738664 chr3R 25738719 25738752 6 88 3.0 2.5 2.8 1.6 121 chr3R 25738631 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738752 intron LpR2 - chr3R_6_25735001 chr3R_25735001 RAL-509 1541 chr3R 25765883 25765910 chr3R 25765959 25765977 8 75 3.5 4.0 3.8 1.7 94 chr3R 25765883 intergenic not near genes chr3R 25765930 intergenic not near genes chr3R 25765977 intergenic not near genes chr3R_8_25765001 chr3R_25765001 RAL-509 1542 chr3R 25789212 25789230 chr3R 25789287 25789308 6 75 3.0 3.0 3.0 1.5 96 chr3R 25789212 exon CG31380 - chr3R 25789260 exon CG31380 - chr3R 25789308 exon CG31380 - chr3R_6_25785001 chr3R_25785001 RAL-509 1543 chr3R 25832695 25832712 chr3R 25841876 25841894 roo 9 9182 4.0 5.5 4.8 1.6 9199 chr3R 25832695 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841894 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-509 1544 chr3R 25832716 25832721 chr3R 25841875 25841903 roo 4 9176 3.5 5.0 4.2 0.8 9187 chr3R 25832716 exon alpha4GT2 + chr3R 25837310 intron alpha4GT2 + chr3R 25841903 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-509 1545 chr3R 25864842 25864874 chr3R 25865100 25865132 8 258 2.0 2.0 2.0 2.7 290 chr3R 25864842 intron CG5890 + chr3R 25864987 intron CG5890 + chr3R 25865132 intron CG5890 + chr3R_8_25860001 chr3R_25860001 RAL-509 1546 chr3R 25927505 25927539 chr3R 25927585 25927621 9 82 2.0 2.5 2.2 2.8 116 chr3R 25927505 intron CCAP-R - chr3R 25927563 intron CCAP-R - chr3R 25927621 intron CCAP-R - chr3R_9_25925001 chr3R_25925001 RAL-509 1547 chr3R 26122463 26122480 chr3R 26122539 26122556 5 75 6.5 3.0 4.8 0.9 93 chr3R 26122463 intron CG31324 + chr3R 26122510 intron CG31324 + chr3R 26122556 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-509 1548 chr3R 26126552 26126559 chr3R 26126637 26126645 4 86 3.5 1.5 2.5 1.1 93 chr3R 26126552 intron CG31324 + chr3R 26126598 intron CG31324 + chr3R 26126645 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-509 1549 chr3R 26148696 26148723 chr3R 26148776 26148802 9 80 2.0 1.0 1.5 3.6 106 chr3R 26148696 intergenic not near genes chr3R 26148749 intergenic not near genes chr3R 26148802 intergenic not near genes chr3R_9_26145001 chr3R_26145001 RAL-509 1550 chr3R 26199490 26199519 chr3R 26199628 26199658 9 139 0.5 1.5 1.0 4.5 168 chr3R 26199490 intron CR44320 + chr3R 26199574 intron CR44320 + chr3R 26199658 intron CR44320 + chr3R_9_26195001 chr3R_26195001 RAL-509 1551 chr3R 26233608 26233619 chr3R 26233862 26233873 4 254 4.5 6.0 5.2 0.6 265 chr3R 26233608 3` UTR CG12290 + chr3R 26233740 3` UTR CG12290 + chr3R 26233873 3` UTR CG12290 + chr3R_4_26230001 chr3R_26230001 RAL-509 1552 chr3R 26265822 26265847 chr3R 26265909 26265935 6 88 1.5 3.5 2.5 1.7 113 chr3R 26265822 intron CG6154 + chr3R 26265878 intron CG6154 + chr3R 26265935 intron CG6154 + chr3R_6_26265001 chr3R_26265001 RAL-509 1553 chr3R 26295854 26295880 chr3R 26295955 26295981 7 99 1.5 3.0 2.2 2.2 127 chr3R 26295854 intergenic not near genes chr3R 26295918 intergenic not near genes chr3R 26295981 intergenic not near genes chr3R_7_26295001 chr3R_26295001 RAL-509 1554 chr3R 26307793 26307819 chr3R 26308172 26308199 6 380 2.5 3.0 2.8 1.6 406 chr3R 26307793 intergenic not near genes chr3R 26307996 intergenic not near genes chr3R 26308199 intergenic not near genes chr3R_6_26305001 chr3R_26305001 RAL-509 1555 chr3R 26370347 26370352 chr3R 26370432 26370437 4 85 1.0 3.5 2.2 1.2 90 chr3R 26370347 intergenic not near genes chr3R 26370392 intergenic not near genes chr3R 26370437 intergenic not near genes chr3R_4_26370001 chr3R_26370001 RAL-509 1556 chr3R 26376324 26376354 chr3R 26385484 26385514 roo 11 9159 3.5 0.5 2.0 3.7 9190 chr3R 26376324 intergenic not near genes chr3R 26380919 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_11_26380001 chr3R_26380001 RAL-509 1557 chr3R 26413270 26413301 chr3R 26413366 26413398 5 95 2.0 3.5 2.8 1.3 128 chr3R 26413270 intergenic not near genes chr3R 26413334 intergenic not near genes chr3R 26413398 intergenic not near genes chr3R_5_26410001 chr3R_26410001 RAL-509 1558 chr3R 26489137 26489166 chr3R 26489217 26489245 5 71 2.5 2.5 2.5 1.4 108 chr3R 26489137 intron plum - chr3R 26489191 intron plum - chr3R 26489245 intron plum - chr3R_5_26485001 chr3R_26485001 RAL-509 1559 chr3R 26502300 26502304 chr3R 26502391 26502395 4 91 2.0 4.5 3.2 1.0 95 chr3R 26502300 intron plum - chr3R 26502348 intron plum - chr3R 26502395 intron plum - chr3R_4_26500001 chr3R_26500001 RAL-509 1560 chr3R 26510505 26510531 chr3R 26519566 26519592 roo 9 9061 2.0 3.5 2.8 2.4 9087 chr3R 26510505 intron plum - chr3R 26515048 intron plum - chr3R 26519592 intron,5` UTR plum -,CR45226 + chr3R_9_26515001 chr3R_26515001 RAL-509 1561 chr3R 26529348 26529378 chr3R 26529431 26529461 9 82 2.0 2.0 2.0 3.0 113 chr3R 26529348 intron plum - chr3R 26529404 intron plum - chr3R 26529461 intron plum - chr3R_9_26525001 chr3R_26525001 RAL-509 1562 chr3R 26558326 26558360 chr3R 26565637 26565671 Stalker4 11 7312 1.0 2.5 1.8 3.9 7345 chr3R 26558326 intron scrib + chr3R 26561998 intron scrib + chr3R 26565671 intron scrib + chr3R_11_26560001 chr3R_26560001 RAL-509 1563 chr3R 26575011 26575035 chr3R 26575090 26575114 6 76 3.5 1.0 2.2 1.9 103 chr3R 26575011 exon scrib + chr3R 26575062 intron scrib + chr3R 26575114 intron scrib + chr3R_6_26575001 chr3R_26575001 RAL-509 1564 chr3R 26669666 26669690 chr3R 26669748 26669772 6 82 1.5 3.0 2.2 1.9 106 chr3R 26669666 intron beat-VII - chr3R 26669719 intron beat-VII - chr3R 26669772 intron beat-VII - chr3R_6_26665001 chr3R_26665001 RAL-509 1565 chr3R 26770248 26770274 chr3R 26770325 26770351 4 77 1.5 4.5 3.0 1.0 103 chr3R 26770248 intergenic CR45563 + chr3R 26770300 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-509 1566 chr3R 26810553 26810583 chr3R 26811038 26811068 roo 10 485 3.5 3.0 3.2 2.4 515 chr3R 26810553 intron Tl + chr3R 26810810 intron Tl + chr3R 26811068 intron Tl + chr3R_10_26810001 chr3R_26810001 RAL-509 1567 chr3R 26885688 26885719 chr3R 26885788 26885817 15 99 2.5 4.5 3.5 3.3 129 chr3R 26885688 intron T48 + chr3R 26885752 intron T48 + chr3R 26885817 intron T48 + chr3R_15_26885001 chr3R_26885001 RAL-509 1568 chr3R 26951885 26952110 chr3R 26951993 26952191 11 101 0.5 0.5 0.5 7.3 306 chr3R 26951885 exon CG6330 - chr3R 26952038 intron CG6330 - chr3R 26952191 intron CG6330 - chr3R_11_26950001 chr3R_26950001 RAL-509 1569 chr3R 27007410 27007426 chr3R 27016545 27016561 roo 4 9135 1.0 1.5 1.2 1.8 9151 chr3R 27007410 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016561 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-509 1570 chr3R 27019521 27019540 chr3R 27019617 27019636 8 93 2.5 2.5 2.5 2.3 115 chr3R 27019521 intron,exon RYa-R +,CG17191 - chr3R 27019578 intron,exon RYa-R +,CG17191 - chr3R 27019636 intron,intron RYa-R +,CG17191 - chr3R_8_27015001 chr3R_27015001 RAL-509 1571 chr3R 27028722 27028746 chr3R 27028801 27028825 6 79 4.0 1.5 2.8 1.6 103 chr3R 27028722 intron RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-509 1572 chr3R 27140521 27140548 chr3R 27148126 27148158 412 22 7609 9.5 7.5 8.5 2.3 7637 chr3R 27140521 intron CG6051 - chr3R 27144340 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_22_27140001 chr3R_27140001 RAL-509 1573 chr3R 27137233 27137257 chr3R 27149199 27149222 412 5 11965 14.5 22.5 18.5 0.3 11989 chr3R 27137233 intron CG6051 - chr3R 27143228 intron CG6051 - chr3R 27149222 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-509 1574 chr3R 27153481 27153506 chr3R 27153559 27153584 5 78 3.5 2.0 2.8 1.3 103 chr3R 27153481 intron Men-b + chr3R 27153532 intron Men-b + chr3R 27153584 intron Men-b + chr3R_5_27150001 chr3R_27150001 RAL-509 1575 chr3R 27299731 27299735 chr3R 27299811 27299816 5 80 2.0 6.0 4.0 1.0 85 chr3R 27299731 intron CG3339 - chr3R 27299774 intron CG3339 - chr3R 27299816 intron CG3339 - chr3R_5_27295001 chr3R_27295001 RAL-509 1576 chr3R 27342791 27342822 chr3R 27351372 27351403 Tirant 6 8581 3.0 3.5 3.2 1.4 8612 chr3R 27342791 intron CG42534 + chr3R 27347097 intron CG42534 + chr3R 27351403 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-509 1577 chr3R 27457877 27457894 chr3R 27457963 27457986 4 90 4.0 0.5 2.2 1.2 109 chr3R 27457877 intergenic not near genes chr3R 27457932 intergenic not near genes chr3R 27457986 intergenic not near genes chr3R_4_27455001 chr3R_27455001 RAL-509 1578 chr3R 27480306 27480340 chr3R 27480398 27480431 11 92 3.0 5.0 4.0 2.2 125 chr3R 27480306 3` UTR Cyp6a18 + chr3R 27480368 3` UTR Cyp6a18 + chr3R 27480431 3` UTR Cyp6a18 + chr3R_11_27480001 chr3R_27480001 RAL-509 1579 chr3R 27494330 27494343 chr3R 27494449 27494459 6 118 1.5 2.5 2.0 2.0 129 chr3R 27494330 intergenic not near genes chr3R 27494394 intergenic not near genes chr3R 27494459 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-509 1580 chr3R 27595060 27595086 chr3R 27595138 27595169 8 82 2.5 2.0 2.2 2.5 109 chr3R 27595060 intron CG5639 - chr3R 27595114 intron CG5639 - chr3R 27595169 intron CG5639 - chr3R_8_27595001 chr3R_27595001 RAL-509 1581 chr3R 27619714 27619727 chr3R 27619827 27619840 7 112 3.5 3.5 3.5 1.6 126 chr3R 27619714 intron Tusp + chr3R 27619777 intron Tusp + chr3R 27619840 intron Tusp + chr3R_7_27615001 chr3R_27615001 RAL-509 1582 chr3R 27706774 27706806 chr3R 27706851 27706883 7 77 4.0 1.0 2.5 2.0 109 chr3R 27706774 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706883 intergenic CG12428 -,CG12877 + chr3R_7_27705001 chr3R_27705001 RAL-509 1583 chr3R 27725572 27725597 chr3R 27731014 27731039 I-element 7 5441 0.0 2.0 1.0 3.5 5467 chr3R 27725572 intergenic not near genes chr3R 27728306 intergenic not near genes chr3R 27731039 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-509 1584 chr3R 27746146 27746167 chr3R 27746224 27746236 7 73 3.0 6.5 4.8 1.2 90 chr3R 27746146 intron Ets98B + chr3R 27746191 intron Ets98B + chr3R 27746236 intron Ets98B + chr3R_7_27745001 chr3R_27745001 RAL-509 1585 chr3R 27787754 27787768 chr3R 27788151 27788165 6 395 2.5 0.0 1.2 2.7 411 chr3R 27787754 intron CG34353 - chr3R 27787960 intron CG34353 - chr3R 27788165 intron CG34353 - chr3R_6_27785001 chr3R_27785001 RAL-509 1586 chr3R 27799936 27799964 chr3R 27800018 27800046 13 82 3.5 2.5 3.0 3.2 110 chr3R 27799936 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_13_27795001 chr3R_27795001 RAL-509 1587 chr3R 27803253 27803269 chr3R 27803349 27803372 6 98 3.5 1.0 2.2 1.9 119 chr3R 27803253 intron CG34353 - chr3R 27803312 intron CG34353 - chr3R 27803372 intron CG34353 - chr3R_6_27800001 chr3R_27800001 RAL-509 1588 chr3R 27856758 27856787 chr3R 27858241 27858270 hopper2 14 1481 5.5 1.5 3.5 3.1 1512 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_14_27855001 chr3R_27855001 RAL-509 1589 chr3R 27861326 27861347 chr3R 27861565 27861587 9 239 4.5 0.5 2.5 2.6 261 chr3R 27861326 intron CG34353 - chr3R 27861456 intron CG34353 - chr3R 27861587 intron CG34353 - chr3R_9_27860001 chr3R_27860001 RAL-509 1590 chr3R 27862958 27862987 chr3R 27868263 27868292 Transpac 7 5305 2.5 3.0 2.8 1.8 5334 chr3R 27862958 intron CG34353 - chr3R 27865625 intron CG34353 - chr3R 27868292 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-509 1591 chr3R 27875700 27875728 chr3R 27882755 27882783 297 12 7054 3.5 3.5 3.5 2.7 7083 chr3R 27875700 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_12_27875001 chr3R_27875001 RAL-509 1592 chr3R 28017950 28017974 chr3R 28018037 28018063 6 86 4.0 4.0 4.0 1.2 113 chr3R 28017950 intergenic not near genes chr3R 28018006 intergenic not near genes chr3R 28018063 intergenic not near genes chr3R_6_28015001 chr3R_28015001 RAL-509 1593 chr3R 28068492 28068524 chr3R 28073933 28073965 I-element 16 5441 3.0 4.0 3.5 3.6 5473 chr3R 28068492 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073965 intron CG34362 + chr3R_16_28070001 chr3R_28070001 RAL-509 1594 chr3R 28153570 28153582 chr3R 28153641 28153671 5 80 2.0 2.0 2.0 1.7 101 chr3R 28153570 intron CG34354 + chr3R 28153620 intron CG34354 + chr3R 28153671 intron CG34354 + chr3R_5_28150001 chr3R_28150001 RAL-509 1595 chr3R 28173671 28173704 chr3R 28181101 28181134 mdg1 8 7430 1.5 6.0 3.8 1.7 7463 chr3R 28173671 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-509 1596 chr3R 28215824 28215848 chr3R 28215893 28215923 12 74 3.5 2.5 3.0 3.0 99 chr3R 28215824 intron CG34354 + chr3R 28215874 intron CG34354 + chr3R 28215923 intron CG34354 + chr3R_12_28215001 chr3R_28215001 RAL-509 1597 chr3R 28253338 28253368 chr3R 28255848 28255878 jockey 19 2510 4.0 3.5 3.8 4.0 2540 chr3R 28253338 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255878 intergenic not near genes chr3R_19_28250001 chr3R_28250001 RAL-509 1598 chr3R 28262673 28262683 chr3R 28262749 28262749 5 74 7.5 6.0 6.8 0.6 76 chr3R 28262673 intergenic CG43125 - chr3R 28262711 intergenic CG43125 - chr3R 28262749 exon CG43125 - chr3R_5_28260001 chr3R_28260001 RAL-509 1599 chr3R 28390118 28390147 chr3R 28390190 28390225 15 76 1.5 3.0 2.2 4.7 107 chr3R 28390118 intergenic not near genes chr3R 28390172 intergenic not near genes chr3R 28390225 intergenic not near genes chr3R_15_28390001 chr3R_28390001 RAL-509 1600 chr3R 28393697 28393725 chr3R 28393797 28393825 8 100 1.0 3.0 2.0 2.7 128 chr3R 28393697 intergenic not near genes chr3R 28393761 intergenic not near genes chr3R 28393825 intergenic not near genes chr3R_8_28390001 chr3R_28390001 RAL-509 1601 chr3R 28410985 28411004 chr3R 28411076 28411096 6 92 4.5 2.0 3.2 1.4 111 chr3R 28410985 intergenic not near genes chr3R 28411040 intergenic not near genes chr3R 28411096 intergenic not near genes chr3R_6_28410001 chr3R_28410001 RAL-509 1602 chr3R 28421660 28421680 chr3R 28421747 28421766 5 87 4.5 3.0 3.8 1.0 106 chr3R 28421660 intron beat-VI + chr3R 28421713 intron beat-VI + chr3R 28421766 intron beat-VI + chr3R_5_28420001 chr3R_28420001 RAL-509 1603 chr3R 28464338 28464376 chr3R 28464423 28464461 7 85 1.0 3.5 2.2 2.2 123 chr3R 28464338 intron beat-VI + chr3R 28464400 intron beat-VI + chr3R 28464461 intron beat-VI + chr3R_7_28460001 chr3R_28460001 RAL-509 1604 chr3R 28478416 28478443 chr3R 28478497 28478507 10 77 4.5 4.0 4.2 1.9 91 chr3R 28478416 intergenic not near genes chr3R 28478462 intergenic not near genes chr3R 28478507 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-509 1605 chr3R 28479146 28479157 chr3R 28479229 28479240 8 83 3.0 2.0 2.5 2.3 94 chr3R 28479146 intergenic not near genes chr3R 28479193 intergenic not near genes chr3R 28479240 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-509 1606 chr3R 28484353 28484375 chr3R 28486270 28486292 37 1918 46.0 52.5 49.2 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_37_28485001 chr3R_28485001 RAL-509 1607 chr3R 28631831 28631857 chr3R 28631915 28631940 8 83 2.5 2.5 2.5 2.3 109 chr3R 28631831 intron CG10011 - chr3R 28631886 intron CG10011 - chr3R 28631940 intron CG10011 - chr3R_8_28630001 chr3R_28630001 RAL-509 1608 chr3R 28643425 28643435 chr3R 28643571 28643596 6 160 3.0 5.0 4.0 1.2 171 chr3R 28643425 intergenic not near genes chr3R 28643510 intergenic not near genes chr3R 28643596 intergenic not near genes chr3R_6_28640001 chr3R_28640001 RAL-509 1609 chr3R 28742488 28742504 chr3R 28742564 28742580 4 76 2.0 2.5 2.2 1.2 92 chr3R 28742488 intron AstA-R2 - chr3R 28742534 intron AstA-R2 - chr3R 28742580 intron AstA-R2 - chr3R_4_28740001 chr3R_28740001 RAL-509 1610 chr3R 28758283 28758298 chr3R 28763900 28763915 roo 4 5617 4.5 0.0 2.2 1.2 5632 chr3R 28758283 intergenic aqrs - chr3R 28761099 intergenic not near genes chr3R 28763915 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-509 1611 chr3R 28763900 28763915 chr3R 28771343 28771358 Stalker4 8 7443 0.0 4.5 2.2 2.5 7458 chr3R 28763900 intergenic not near genes chr3R 28767629 intergenic not near genes chr3R 28771358 intergenic not near genes chr3R_8_28765001 chr3R_28765001 RAL-509 1612 chr3R 28777751 28777779 chr3R 28777947 28777975 13 196 2.0 2.5 2.2 4.1 224 chr3R 28777751 5` UTR CR44952 + chr3R 28777863 intergenic CR44952 + chr3R 28777975 intergenic CR44952 + chr3R_13_28775001 chr3R_28775001 RAL-509 1613 chr3R 28792875 28792888 chr3R 28797968 28797981 jockey 8 5094 1.5 3.0 2.2 2.5 5106 chr3R 28792875 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797981 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-509 1614 chr3R 28805683 28805701 chr3R 28805757 28805776 6 75 1.5 4.0 2.8 1.6 93 chr3R 28805683 intergenic not near genes chr3R 28805730 intergenic not near genes chr3R 28805776 intergenic not near genes chr3R_6_28805001 chr3R_28805001 RAL-509 1615 chr3R 21907534 21907534 chr3R 28831801 28831804 25 6924266 21.5 18.5 20.0 1.2 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-509 1616 chr3R 28896346 28896380 chr3R 28896424 28896458 16 77 1.0 3.5 2.2 5.0 112 chr3R 28896346 intron Doa + chr3R 28896402 intron Doa + chr3R 28896458 intron Doa + chr3R_16_28895001 chr3R_28895001 RAL-509 1617 chr3R 28971161 28971193 chr3R 28971242 28971274 5 81 1.5 2.5 2.0 1.7 113 chr3R 28971161 5` UTR CR45669 + chr3R 28971218 5` UTR CR45669 + chr3R 28971274 5` UTR CR45669 + chr3R_5_28970001 chr3R_28970001 RAL-509 1618 chr3R 28989911 28989931 chr3R 28990079 28990106 8 173 0.5 5.0 2.8 2.1 195 chr3R 28989911 intergenic not near genes chr3R 28990008 intergenic not near genes chr3R 28990106 intergenic not near genes chr3R_8_28990001 chr3R_28990001 RAL-509 1619 chr3R 29032747 29032775 chr3R 29032824 29032852 9 75 5.5 1.0 3.2 2.1 105 chr3R 29032747 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032800 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032852 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_9_29030001 chr3R_29030001 RAL-509 1620 chr3R 29170519 29170555 chr3R 29170597 29170633 9 77 2.0 4.5 3.2 2.1 114 chr3R 29170519 intron CG11898 + chr3R 29170576 intron CG11898 + chr3R 29170633 intron CG11898 + chr3R_9_29170001 chr3R_29170001 RAL-509 1621 chr3R 29213069 29213092 chr3R 29213152 29213175 15 83 3.0 5.0 4.0 3.0 106 chr3R 29213069 intergenic not near genes chr3R 29213122 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_15_29210001 chr3R_29210001 RAL-509 1622 chr3R 29237256 29237285 chr3R 29239273 29239304 9 2013 13.0 7.5 10.2 0.8 2048 chr3R 29237256 exon CG11951 - chr3R 29238280 intron CG11951 - chr3R 29239304 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-509 1623 chr3R 29239238 29239248 chr3R 29245529 29245539 5 6291 7.5 8.0 7.8 0.6 6301 chr3R 29239238 exon CG31427 - chr3R 29242388 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-509 1624 chr3R 29319826 29319857 chr3R 29320145 29320176 jockey 8 319 1.5 4.0 2.8 2.1 350 chr3R 29319826 intergenic Cnx99A - chr3R 29320001 intergenic Cnx99A - chr3R 29320176 intergenic not near genes chr3R_8_29320001 chr3R_29320001 RAL-509 1625 chr3R 29406619 29406629 chr3R 29407905 29407915 jockey 6 1286 3.5 5.5 4.5 1.1 1296 chr3R 29406619 intron Ptp99A + chr3R 29407267 intron Ptp99A + chr3R 29407915 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-509 1626 chr3R 29406633 29406647 chr3R 29407897 29407900 jockey 6 1268 2.5 4.0 3.2 1.4 1267 chr3R 29406633 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407900 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-509 1627 chr3R 29505892 29505921 chr3R 29505969 29505998 5 77 1.5 2.0 1.8 1.8 106 chr3R 29505892 intergenic not near genes chr3R 29505945 intergenic not near genes chr3R 29505998 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-509 1628 chr3R 29526236 29526264 chr3R 29526323 29526351 6 87 1.5 4.5 3.0 1.5 115 chr3R 29526236 intergenic not near genes chr3R 29526294 intergenic not near genes chr3R 29526351 intergenic not near genes chr3R_6_29525001 chr3R_29525001 RAL-509 1629 chr3R 29717001 29717026 chr3R 29717077 29717100 11 76 3.0 6.5 4.8 1.9 99 chr3R 29717001 intergenic Obp99b - chr3R 29717050 intergenic Obp99b - chr3R 29717100 intergenic Obp99b - chr3R_11_29715001 chr3R_29715001 RAL-509 1630 chr3R 29738267 29738299 chr3R 29739734 29739766 hobo 9 1465 1.5 2.5 2.0 3.0 1499 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-509 1631 chr3R 29854839 29854855 chr3R 29854914 29854935 4 78 2.0 7.0 4.5 0.7 96 chr3R 29854839 3` UTR dgt1 - chr3R 29854887 exon dgt1 - chr3R 29854935 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-509 1632 chr3R 29854857 29854861 chr3R 29854906 29854941 4 71 2.0 4.0 3.0 1.0 84 chr3R 29854857 3` UTR dgt1 - chr3R 29854899 exon dgt1 - chr3R 29854941 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-509 1633 chr3R 29882019 29882050 chr3R 29891176 29891207 roo 5 9157 3.0 4.0 3.5 1.1 9188 chr3R 29882019 intron CG31038 + chr3R 29886613 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-509 1634 chr3R 29963485 29963510 chr3R 29963585 29963612 6 102 1.5 4.5 3.0 1.5 127 chr3R 29963485 intron TkR99D - chr3R 29963548 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-509 1635 chr3R 30032172 30032176 chr3R 30032251 30032255 4 79 3.5 4.0 3.8 0.8 83 chr3R 30032172 intron Axn + chr3R 30032214 intron Axn + chr3R 30032255 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-509 1636 chr3R 30046334 30046357 chr3R 30046457 30046480 11 122 6.0 3.5 4.8 1.9 146 chr3R 30046334 intergenic CG7943 +,RpL32 - chr3R 30046407 intergenic CG7943 +,RpL32 - chr3R 30046480 5` UTR CG7943 + chr3R_11_30045001 chr3R_30045001 RAL-509 1637 chr3R 30082992 30083021 chr3R 30083068 30083096 6 76 2.0 2.5 2.2 1.9 104 chr3R 30082992 intron sima + chr3R 30083044 intron sima + chr3R 30083096 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-509 1638 chr3R 30084849 30084880 chr3R 30086316 30086346 hobo 11 1467 4.5 3.0 3.8 2.3 1497 chr3R 30084849 intron sima + chr3R 30085598 intron sima + chr3R 30086346 intron sima + chr3R_11_30085001 chr3R_30085001 RAL-509 1639 chr3R 30147850 30147872 chr3R 30147936 30147958 5 86 0.0 2.0 1.0 2.5 108 chr3R 30147850 intron AdoR - chr3R 30147904 intron AdoR - chr3R 30147958 intron AdoR - chr3R_5_30145001 chr3R_30145001 RAL-509 1640 chr3R 30170757 30170791 chr3R 30170844 30170878 10 87 4.0 3.5 3.8 2.1 121 chr3R 30170757 intron CG31028 - chr3R 30170818 intron CG31028 - chr3R 30170878 intron CG31028 - chr3R_10_30170001 chr3R_30170001 RAL-509 1641 chr3R 30177746 30177774 chr3R 30177863 30177887 6 116 2.0 3.0 2.5 1.7 141 chr3R 30177746 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177887 5` UTR CG15530 + chr3R_6_30175001 chr3R_30175001 RAL-509 1642 chr3R 30183225 30183234 chr3R 30183334 30183341 5 108 2.0 3.0 2.5 1.4 116 chr3R 30183225 intergenic not near genes chr3R 30183283 intergenic not near genes chr3R 30183341 intergenic not near genes chr3R_5_30180001 chr3R_30180001 RAL-509 1643 chr3R 30210667 30210671 chr3R 30210739 30210749 4 76 0.0 5.5 2.8 1.1 82 chr3R 30210667 intergenic CecA1 +,Anp + chr3R 30210708 intergenic CecA1 +,Anp + chr3R 30210749 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-509 1644 chr3R 30224088 30224121 chr3R 30224257 30224288 6 168 4.0 2.0 3.0 1.5 200 chr3R 30224088 intergenic not near genes chr3R 30224188 intergenic not near genes chr3R 30224288 intergenic not near genes chr3R_6_30220001 chr3R_30220001 RAL-509 1645 chr3R 30234456 30234479 chr3R 30234732 30234747 11 274 6.0 1.5 3.8 2.3 291 chr3R 30234456 intergenic not near genes chr3R 30234602 intergenic not near genes chr3R 30234747 intergenic not near genes chr3R_11_30230001 chr3R_30230001 RAL-509 1646 chr3R 30238759 30238792 chr3R 30239923 30239956 1360 9 1163 2.0 1.5 1.8 3.2 1197 chr3R 30238759 intergenic not near genes chr3R 30239358 intergenic not near genes chr3R 30239956 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-509 1647 chr3R 30246308 30246334 chr3R 30246387 30246413 5 79 0.0 0.0 0.0 5.0 105 chr3R 30246308 intron CG9733 - chr3R 30246360 intron CG9733 - chr3R 30246413 intron CG9733 - chr3R_5_30245001 chr3R_30245001 RAL-509 1648 chr3R 30268245 30268447 chr3R 30268324 30268497 13 76 4.0 1.5 2.8 3.4 252 chr3R 30268245 intergenic not near genes chr3R 30268371 intergenic not near genes chr3R 30268497 intergenic not near genes chr3R_13_30265001 chr3R_30265001 RAL-509 1649 chr3R 30307120 30307152 chr3R 30307198 30307233 8 79 1.0 1.5 1.2 3.6 113 chr3R 30307120 intron hdc + chr3R 30307176 intron hdc + chr3R 30307233 intron hdc + chr3R_8_30305001 chr3R_30305001 RAL-509 1650 chr3R 30317330 30317352 chr3R 30324922 30324944 roo 4 7592 0.5 4.5 2.5 1.1 7614 chr3R 30317330 intron hdc + chr3R 30321137 intron hdc + chr3R 30324944 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-509 1651 chr3R 30375537 30375570 chr3R 30383162 30383194 412 7 7625 2.0 3.0 2.5 2.0 7657 chr3R 30375537 intergenic not near genes chr3R 30379366 intergenic not near genes chr3R 30383194 intergenic not near genes chr3R_7_30375001 chr3R_30375001 RAL-509 1652 chr3R 30396217 30396244 chr3R 30404483 30404510 roo 4 8266 3.0 1.0 2.0 1.3 8293 chr3R 30396217 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-509 1653 chr3R 30436806 30436837 chr3R 30436918 30436949 10 110 2.0 5.0 3.5 2.2 143 chr3R 30436806 intron CG15537 - chr3R 30436878 intron CG15537 - chr3R 30436949 intron CG15537 - chr3R_10_30435001 chr3R_30435001 RAL-509 1654 chr3R 30480474 30480499 chr3R 30482942 30482964 jockey 7 2467 3.0 2.0 2.5 2.0 2490 chr3R 30480474 intron PH4alphaEFB + chr3R 30481719 intron PH4alphaEFB + chr3R 30482964 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-509 1655 chr3R 30498406 30498435 chr3R 30498606 30498635 8 199 0.0 3.0 1.5 3.2 229 chr3R 30498406 intron PH4alphaNE1 - chr3R 30498520 intron PH4alphaNE1 - chr3R 30498635 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-509 1656 chr3R 30627602 30627639 chr3R 30627681 30627717 10 78 1.5 5.0 3.2 2.4 115 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627717 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-509 1657 chr3R 30679522 30679549 chr3R 30686991 30687018 blood 8 7469 5.0 3.0 4.0 1.6 7496 chr3R 30679522 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-509 1658 chr3R 30747547 30747573 chr3R 30747623 30747649 9 76 3.5 2.5 3.0 2.2 102 chr3R 30747547 intergenic CR43238 - chr3R 30747598 intergenic CR43238 - chr3R 30747649 intergenic CR43238 - chr3R_9_30745001 chr3R_30745001 RAL-509 1659 chr3R 30818809 30818844 chr3R 30820374 30820409 1360 8 1564 3.5 0.5 2.0 2.7 1600 chr3R 30818809 intron cindr + chr3R 30819609 intron cindr + chr3R 30820409 intron cindr + chr3R_8_30815001 chr3R_30815001 RAL-509 1660 chr3R 30900544 30900562 chr3R 30901679 30901696 5 1135 2.5 1.0 1.8 1.8 1152 chr3R 30900544 3` UTR Cyp4c3 + chr3R 30901120 intron CG33483 - chr3R 30901696 intron CG33483 - chr3R_5_30900001 chr3R_30900001 RAL-509 1661 chr3R 30973134 30973160 chr3R 30973295 30973321 7 160 3.0 4.5 3.8 1.5 187 chr3R 30973134 intron 5-HT7 - chr3R 30973228 intron 5-HT7 - chr3R 30973321 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-509 1662 chr3R 31042110 31042140 chr3R 31042197 31042226 7 87 2.0 2.5 2.2 2.2 116 chr3R 31042110 intron CanA1 + chr3R 31042168 intron CanA1 + chr3R 31042226 intron CanA1 + chr3R_7_31040001 chr3R_31040001 RAL-509 1663 chr3R 31074229 31074259 chr3R 31081827 31081857 springer 10 7598 4.0 4.0 4.0 2.0 7628 chr3R 31074229 intron Sox100B + chr3R 31078043 intron Sox100B + chr3R 31081857 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-509 1664 chr3R 31137154 31137179 chr3R 31137234 31137259 6 80 3.5 2.5 3.0 1.5 105 chr3R 31137154 intron Gycbeta100B + chr3R 31137206 intron Gycbeta100B + chr3R 31137259 intron Gycbeta100B + chr3R_6_31135001 chr3R_31135001 RAL-509 1665 chr3R 31270799 31270812 chr3R 31270906 31270919 4 107 2.5 3.5 3.0 1.0 120 chr3R 31270799 intergenic not near genes chr3R 31270859 intergenic not near genes chr3R 31270919 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-509 1666 chr3R 31279397 31279403 chr3R 31285572 31285594 diver 6 6188 0.5 3.5 2.0 2.0 6197 chr3R 31279397 intergenic not near genes chr3R 31282496 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-509 1667 chr3R 31421008 31421043 chr3R 31421257 31421292 10 249 1.5 5.0 3.2 2.4 284 chr3R 31421008 intron Gprk2 + chr3R 31421150 intron Gprk2 + chr3R 31421292 intron Gprk2 + chr3R_10_31420001 chr3R_31420001 RAL-509 1668 chr3R 31426878 31426912 chr3R 31426970 31427004 9 92 4.0 1.5 2.8 2.4 126 chr3R 31426878 intron Gprk2 + chr3R 31426941 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-509 1669 chr3R 31448605 31448625 chr3R 31448680 31448690 4 73 4.5 5.5 5.0 0.7 85 chr3R 31448605 intron Gprk2 + chr3R 31448648 intron Gprk2 + chr3R 31448690 intron Gprk2 + chr3R_4_31445001 chr3R_31445001 RAL-509 1670 chr3R 31530838 31530844 chr3R 31531145 31531170 5 314 3.0 2.5 2.8 1.3 332 chr3R 31530838 intergenic not near genes chr3R 31531004 intergenic not near genes chr3R 31531170 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-509 1671 chr3R 31530845 31530849 chr3R 31531142 31531171 5 317 2.5 1.5 2.0 1.7 326 chr3R 31530845 intergenic not near genes chr3R 31531008 intergenic not near genes chr3R 31531171 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-509 1672 chr3R 31539341 31539354 chr3R 31539426 31539439 5 85 3.0 5.0 4.0 1.0 98 chr3R 31539341 intergenic not near genes chr3R 31539390 intergenic not near genes chr3R 31539439 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-509 1673 chr3R 31539865 31539882 chr3R 31539947 31539967 4 84 4.0 6.0 5.0 0.7 102 chr3R 31539865 intergenic not near genes chr3R 31539916 intergenic not near genes chr3R 31539967 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-509 1674 chr3R 31599785 31599806 chr3R 31599865 31599890 6 84 3.5 4.0 3.8 1.2 105 chr3R 31599785 intron CycG - chr3R 31599838 intron CycG - chr3R 31599890 intron CycG - chr3R_6_31595001 chr3R_31595001 RAL-509 1675 chr3R 31627029 31627058 chr3R 31627537 31627567 11 507 2.0 1.5 1.8 3.9 538 chr3R 31627029 intron kek6 + chr3R 31627298 intron kek6 + chr3R 31627567 intron kek6 + chr3R_11_31625001 chr3R_31625001 RAL-509 1676 chr3R 31691536 31691562 chr3R 31696298 31696298 Doc 6 4756 2.5 7.0 4.8 1.0 4762 chr3R 31691536 intergenic not near genes chr3R 31693917 intergenic not near genes chr3R 31696298 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-509 1677 chr3R 31905786 31905821 chr3R 31905862 31905898 6 76 2.0 3.5 2.8 1.6 112 chr3R 31905786 intron heph - chr3R 31905842 intron heph - chr3R 31905898 intron heph - chr3R_6_31905001 chr3R_31905001 RAL-509 1678 chr3R 31961338 31961367 chr3R 31961420 31961450 6 79 2.0 3.5 2.8 1.6 112 chr3R 31961338 intron heph - chr3R 31961394 intron heph - chr3R 31961450 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-509 1679 chr3R 31962087 31962096 chr3R 31962392 31962400 4 305 1.5 3.0 2.2 1.2 313 chr3R 31962087 intron heph - chr3R 31962244 intron heph - chr3R 31962400 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-509 1680 chr3R 31975805 31975826 chr3R 31975882 31975889 5 78 1.0 1.5 1.2 2.3 84 chr3R 31975805 intron heph - chr3R 31975847 intron heph - chr3R 31975889 intron heph - chr3R_5_31975001 chr3R_31975001 RAL-509 1681 chr3R 31976544 31976574 chr3R 31976825 31976851 8 280 0.0 1.0 0.5 5.3 307 chr3R 31976544 intron heph - chr3R 31976698 intron heph - chr3R 31976851 intron heph - chr3R_8_31975001 chr3R_31975001 RAL-509 1682 chr3R 31997992 31998016 chr3R 32005462 32005486 blood 8 7469 4.5 4.0 4.2 1.5 7494 chr3R 31997992 intron heph - chr3R 32001739 intron heph - chr3R 32005486 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-509 1683 chr4 76487 76513 chr4 81930 81950 I-element 5 5442 8.0 1.5 4.8 0.9 5463 chr4 76487 intron pan + chr4 79218 intron pan + chr4 81950 intron pan + chr4_5_75001 chr4_75001 RAL-509 1684 chr4 355690 355709 chr4 355773 355792 8 82 1.5 1.5 1.5 3.2 102 chr4 355690 intron PMCA - chr4 355741 intron PMCA - chr4 355792 intron PMCA - chr4_8_355001 chr4_355001 RAL-509 1685 chr4 521336 521349 chr4 521414 521426 6 78 2.0 2.5 2.2 1.9 90 chr4 521336 intron zfh2 + chr4 521381 intron zfh2 + chr4 521426 intron zfh2 + chr4_6_520001 chr4_520001 RAL-509 1686 chr4 662186 662201 chr4 662831 662846 INE-1 4 645 1.5 0.0 0.8 2.2 660 chr4 662186 intron gw - chr4 662516 intron gw - chr4 662846 5` UTR gw - chr4_4_660001 chr4_660001 RAL-509 1687 chr4 671614 671636 chr4 680186 680219 Tirant 8 8580 2.5 2.0 2.2 2.5 8605 chr4 671614 intron CG11360 + chr4 675916 intron CG11360 + chr4 680219 intron CG11360 + chr4_8_675001 chr4_675001 RAL-509 1688 chr4 852901 852921 chr4 853264 853285 6 364 2.0 2.0 2.0 2.0 384 chr4 852901 intergenic not near genes chr4 853093 intergenic not near genes chr4 853285 intergenic CG11148 - chr4_6_850001 chr4_850001 RAL-509 1689 chrX 295860 295877 chrX 303479 303495 412 7 7620 5.5 2.5 4.0 1.4 7635 chrX 295860 intron CG3777 + chrX 299678 intron CG3777 + chrX 303495 intron CG3777 + chrX_7_295001 chrX_295001 RAL-509 1690 chrX 318484 318496 chrX 323570 323581 flea 4 5086 3.5 2.0 2.8 1.1 5097 chrX 318484 intron,intron CG3777 +,CG32816 - chrX 321032 intron,intron CG3777 +,CG32816 - chrX 323581 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-509 1691 chrX 551431 551448 chrX 558989 559007 412 6 7559 4.5 1.0 2.8 1.6 7576 chrX 551431 intron Appl + chrX 555219 intron Appl + chrX 559007 intron Appl + chrX_6_555001 chrX_555001 RAL-509 1692 chrX 667647 667683 chrX 667731 667767 7 84 2.5 2.0 2.2 2.2 120 chrX 667647 intergenic not near genes chrX 667707 intergenic not near genes chrX 667767 intergenic not near genes chrX_7_665001 chrX_665001 RAL-509 1693 chrX 670268 670284 chrX 670348 670364 4 79 0.0 0.0 0.0 4.0 96 chrX 670268 intergenic not near genes chrX 670316 intergenic not near genes chrX 670364 intergenic not near genes chrX_4_670001 chrX_670001 RAL-509 1694 chrX 680837 680870 chrX 680920 680953 9 83 2.0 1.5 1.8 3.2 116 chrX 680837 intergenic not near genes chrX 680895 intergenic not near genes chrX 680953 intergenic not near genes chrX_9_680001 chrX_680001 RAL-509 1695 chrX 706803 706828 chrX 707167 707190 13 364 0.0 2.5 1.2 5.9 387 chrX 706803 intron sdk + chrX 706996 intron sdk + chrX 707190 intron sdk + chrX_13_705001 chrX_705001 RAL-509 1696 chrX 778126 778155 chrX 778216 778244 7 89 4.5 0.0 2.2 2.2 118 chrX 778126 intron fz3 + chrX 778185 intron fz3 + chrX 778244 intron fz3 + chrX_7_775001 chrX_775001 RAL-509 1697 chrX 806789 806811 chrX 806882 806900 4 93 2.0 5.0 3.5 0.9 111 chrX 806789 intron Sec22 + chrX 806844 intron Sec22 + chrX 806900 intron Sec22 + chrX_4_805001 chrX_805001 RAL-509 1698 chrX 826380 826417 chrX 826541 826574 11 160 2.5 1.0 1.8 3.9 194 chrX 826380 intron CG43867 - chrX 826477 intron CG43867 - chrX 826574 intron CG43867 - chrX_11_825001 chrX_825001 RAL-509 1699 chrX 827616 827625 chrX 835394 835414 roo 5 7789 4.0 0.0 2.0 1.7 7798 chrX 827616 intron CG43867 - chrX 831515 intron CG43867 - chrX 835414 intron CG43867 - chrX_5_830001 chrX_830001 RAL-509 1700 chrX 906703 906729 chrX 908492 908507 S-element 8 1787 4.0 8.0 6.0 1.1 1804 chrX 906703 intron CG43867 - chrX 907605 intron CG43867 - chrX 908507 intron CG43867 - chrX_8_905001 chrX_905001 RAL-509 1701 chrX 1042512 1042537 chrX 1042587 1042613 6 76 0.5 2.5 1.5 2.4 101 chrX 1042512 5` UTR su(w[a]) + chrX 1042562 5` UTR su(w[a]) + chrX 1042613 5` UTR su(w[a]) + chrX_6_1040001 chrX_1040001 RAL-509 1702 chrX 1050551 1050583 chrX 1050627 1050659 5 76 3.5 1.0 2.2 1.6 108 chrX 1050551 intron CR44779 + chrX 1050605 intron CR44779 + chrX 1050659 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-509 1703 chrX 1218482 1218492 chrX 1218576 1218586 5 94 0.5 4.5 2.5 1.4 104 chrX 1218482 3` UTR CG3638 - chrX 1218534 3` UTR CG3638 - chrX 1218586 3` UTR CG3638 - chrX_5_1215001 chrX_1215001 RAL-509 1704 chrX 1357774 1357811 chrX 1367943 1367981 Doc 6 10170 1.5 1.0 1.2 2.7 10207 chrX 1357774 intergenic png - chrX 1362878 intergenic not near genes chrX 1367981 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-509 1705 chrX 1515228 1515255 chrX 1515305 1515332 4 77 3.5 2.0 2.8 1.1 104 chrX 1515228 intron inc + chrX 1515280 intron inc + chrX 1515332 intron inc + chrX_4_1515001 chrX_1515001 RAL-509 1706 chrX 1554507 1554545 chrX 1554663 1554677 7 153 20.5 15.5 18.0 0.4 170 chrX 1554507 exon Mur2B - chrX 1554592 intron Mur2B - chrX 1554677 exon Mur2B - chrX_7_1550001 chrX_1550001 RAL-509 1707 chrX 1555388 1555390 chrX 1555476 1555485 5 94 25.0 24.0 24.5 0.2 97 chrX 1555388 exon Mur2B - chrX 1555436 exon Mur2B - chrX 1555485 exon Mur2B - chrX_5_1555001 chrX_1555001 RAL-509 1708 chrX 1555393 1555419 chrX 1555474 1555492 15 89 21.0 24.0 22.5 0.6 99 chrX 1555393 exon Mur2B - chrX 1555442 exon Mur2B - chrX 1555492 exon Mur2B - chrX_15_1555001 chrX_1555001 RAL-509 1709 chrX 1627979 1627993 chrX 1635447 1635461 gtwin 5 7467 2.0 0.5 1.2 2.3 7482 chrX 1627979 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635461 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-509 1710 chrX 1903358 1903378 chrX 1903440 1903460 7 80 3.0 4.5 3.8 1.5 102 chrX 1903358 5` UTR CR43864 + chrX 1903409 5` UTR CR43864 + chrX 1903460 5` UTR CR43864 + chrX_7_1900001 chrX_1900001 RAL-509 1711 chrX 1954886 1954918 chrX 1962825 1962858 Stalker2 5 7938 4.0 1.5 2.8 1.3 7972 chrX 1954886 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962858 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-509 1712 chrX 2096362 2096387 chrX 2096455 2096478 6 92 1.0 2.0 1.5 2.4 116 chrX 2096362 intron csw + chrX 2096420 intron csw + chrX 2096478 intron csw + chrX_6_2095001 chrX_2095001 RAL-509 1713 chrX 2099135 2099167 chrX 2099289 2099321 11 153 5.0 2.5 3.8 2.3 186 chrX 2099135 intron csw + chrX 2099228 intron csw + chrX 2099321 intron csw + chrX_11_2095001 chrX_2095001 RAL-509 1714 chrX 2254467 2254472 chrX 2254540 2254548 4 75 5.0 2.0 3.5 0.9 81 chrX 2254467 3` UTR CG3078 - chrX 2254508 3` UTR CG3078 - chrX 2254548 3` UTR CG3078 - chrX_4_2250001 chrX_2250001 RAL-509 1715 chrX 2399841 2399867 chrX 2408193 2408211 roo 6 8342 4.0 5.0 4.5 1.1 8370 chrX 2399841 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408211 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-509 1716 chrX 2578814 2578834 chrX 2578906 2578919 8 91 2.5 2.5 2.5 2.3 105 chrX 2578814 intergenic Pdfr +,Vha36-3 - chrX 2578866 intergenic Vha36-3 -,Pdfr + chrX 2578919 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-509 1717 chrX 2888119 2888147 chrX 2888197 2888225 11 77 1.5 4.5 3.0 2.8 106 chrX 2888119 intron kirre + chrX 2888172 intron kirre + chrX 2888225 intron kirre + chrX_11_2885001 chrX_2885001 RAL-509 1718 chrX 3031167 3031189 chrX 3031243 3031272 4 79 1.5 0.5 1.0 2.0 105 chrX 3031167 intron kirre + chrX 3031220 intron kirre + chrX 3031272 intron kirre + chrX_4_3030001 chrX_3030001 RAL-509 1719 chrX 3058024 3058048 chrX 3058265 3058289 pogo 5 241 1.0 1.0 1.0 2.5 265 chrX 3058024 intron kirre + chrX 3058156 intron kirre + chrX 3058289 intron kirre + chrX_5_3055001 chrX_3055001 RAL-509 1720 chrX 3075635 3075659 chrX 3080941 3080964 Transpac 4 5306 3.0 2.0 2.5 1.1 5329 chrX 3075635 intron kirre + chrX 3078300 intron kirre + chrX 3080964 intron kirre + chrX_4_3075001 chrX_3075001 RAL-509 1721 chrX 3109454 3109470 chrX 3109531 3109546 7 76 0.0 3.5 1.8 2.5 92 chrX 3109454 intron kirre + chrX 3109500 intron kirre + chrX 3109546 intron kirre + chrX_7_3105001 chrX_3105001 RAL-509 1722 chrX 3203471 3203496 chrX 3203661 3203695 11 198 0.0 2.5 1.2 5.0 224 chrX 3203471 intron dnc + chrX 3203583 intron dnc + chrX 3203695 intron dnc + chrX_11_3200001 chrX_3200001 RAL-509 1723 chrX 3398148 3398160 chrX 3398226 3398238 8 80 3.0 3.5 3.2 1.9 90 chrX 3398148 intron,intron CR44999 +,CG12535 - chrX 3398193 intron,intron CR44999 +,CG12535 - chrX 3398238 intron,intron CR44999 +,CG12535 - chrX_8_3395001 chrX_3395001 RAL-509 1724 chrX 3415025 3415050 chrX 3421207 3421235 3S18 5 6184 1.0 2.0 1.5 2.0 6210 chrX 3415025 intron,intron CR44999 +,CG12535 - chrX 3418130 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-509 1725 chrX 3493092 3493120 chrX 3502251 3502278 roo 7 9159 2.0 3.0 2.5 2.0 9186 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497685 intron,intron CR44999 +,Gas8 - chrX 3502278 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-509 1726 chrX 3589487 3589514 chrX 3589573 3589595 6 85 0.0 3.5 1.8 2.1 108 chrX 3589487 intron AstA-R1 + chrX 3589541 intron AstA-R1 + chrX 3589595 intron AstA-R1 + chrX_6_3585001 chrX_3585001 RAL-509 1727 chrX 3597554 3597581 chrX 3619722 3619749 roo 5 22164 2.5 5.0 3.8 1.0 22195 chrX 3597554 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-509 1728 chrX 3630546 3630571 chrX 3630622 3630645 7 76 3.0 2.5 2.8 1.8 99 chrX 3630546 intron AstA-R1 + chrX 3630596 intron AstA-R1 + chrX 3630645 intron AstA-R1 + chrX_7_3630001 chrX_3630001 RAL-509 1729 chrX 3726758 3726797 chrX 3730155 3730194 NOF 11 3397 2.0 3.5 2.8 2.9 3436 chrX 3726758 intron tlk + chrX 3728476 intron tlk + chrX 3730194 intron tlk + chrX_11_3725001 chrX_3725001 RAL-509 1730 chrX 3866113 3866131 chrX 3866191 3866209 4 78 3.5 0.5 2.0 1.3 96 chrX 3866113 intron yin - chrX 3866161 intron yin - chrX 3866209 intron yin - chrX_4_3865001 chrX_3865001 RAL-509 1731 chrX 3874744 3874760 chrX 3874825 3874830 5 79 5.0 2.0 3.5 1.1 86 chrX 3874744 intron CG2930 + chrX 3874787 intron CG2930 + chrX 3874830 intron CG2930 + chrX_5_3870001 chrX_3870001 RAL-509 1732 chrX 3919121 3919147 chrX 3919198 3919225 8 78 2.0 0.0 1.0 4.0 104 chrX 3919121 intron CG42541 - chrX 3919173 intron CG42541 - chrX 3919225 intron CG42541 - chrX_8_3915001 chrX_3915001 RAL-509 1733 chrX 3922131 3922160 chrX 3922406 3922435 6 275 0.0 5.5 2.8 1.6 304 chrX 3922131 intron CG42541 - chrX 3922283 intron CG42541 - chrX 3922435 intron CG42541 - chrX_6_3920001 chrX_3920001 RAL-509 1734 chrX 3986867 3986889 chrX 3994499 3994522 412 5 7632 3.5 5.5 4.5 0.9 7655 chrX 3986867 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994522 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-509 1735 chrX 4132664 4132692 chrX 4132832 4132860 5 168 2.5 1.0 1.8 1.8 196 chrX 4132664 3` UTR GlcAT-I + chrX 4132762 3` UTR GlcAT-I + chrX 4132860 intergenic Fas2 -,GlcAT-I + chrX_5_4130001 chrX_4130001 RAL-509 1736 chrX 4382380 4382383 chrX 4382460 4382463 4 80 3.0 1.5 2.2 1.2 83 chrX 4382380 3` UTR CG12688 + chrX 4382422 3` UTR CG12688 + chrX 4382463 3` UTR CG12688 + chrX_4_4380001 chrX_4380001 RAL-509 1737 chrX 4396973 4397011 chrX 4397058 4397096 13 83 2.5 2.5 2.5 3.7 123 chrX 4396973 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397096 intron CR32773 - chrX_13_4395001 chrX_4395001 RAL-509 1738 chrX 4638647 4638656 chrX 4638784 4638793 5 136 3.5 2.0 2.8 1.3 146 chrX 4638647 exon pon + chrX 4638720 3` UTR pon + chrX 4638793 3` UTR pon + chrX_5_4635001 chrX_4635001 RAL-509 1739 chrX 4656078 4656091 chrX 4656145 4656178 5 82 3.0 4.0 3.5 1.1 100 chrX 4656078 intron Cbp80 + chrX 4656128 intron Cbp80 + chrX 4656178 intron Cbp80 + chrX_5_4655001 chrX_4655001 RAL-509 1740 chrX 4731814 4731831 chrX 4736907 4736924 jockey 5 5093 6.5 0.5 3.5 1.1 5110 chrX 4731814 intergenic not near genes chrX 4734369 intergenic not near genes chrX 4736924 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-509 1741 chrX 4763256 4763285 chrX 4763743 4763773 Stalker4 9 485 2.0 4.0 3.0 2.2 517 chrX 4763256 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763773 intergenic not near genes chrX_9_4760001 chrX_4760001 RAL-509 1742 chrX 4792382 4792407 chrX 4792815 4792840 jockey 7 433 2.5 6.0 4.2 1.3 458 chrX 4792382 intergenic not near genes chrX 4792611 intergenic not near genes chrX 4792840 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-509 1743 chrX 4827976 4827995 chrX 4835347 4835366 Stalker4 5 7371 3.0 2.5 2.8 1.3 7390 chrX 4827976 intergenic not near genes chrX 4831671 intergenic not near genes chrX 4835366 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-509 1744 chrX 4990041 4990076 chrX 4997255 4997290 roo 7 7214 1.5 4.0 2.8 1.8 7249 chrX 4990041 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997290 intron CR44833 - chrX_7_4990001 chrX_4990001 RAL-509 1745 chrX 5096275 5096302 chrX 5103840 5103867 springer 7 7564 1.0 2.5 1.8 2.5 7592 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100071 intron,intron CG15465 +,rg + chrX 5103867 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-509 1746 chrX 5272819 5272852 chrX 5272904 5272939 12 85 2.0 2.0 2.0 4.0 120 chrX 5272819 intergenic not near genes chrX 5272879 intergenic not near genes chrX 5272939 intergenic not near genes chrX_12_5270001 chrX_5270001 RAL-509 1747 chrX 5363639 5363664 chrX 5363729 5363738 8 82 1.0 0.5 0.8 4.4 99 chrX 5363639 intron SK + chrX 5363688 intron SK + chrX 5363738 intron SK + chrX_8_5360001 chrX_5360001 RAL-509 1748 chrX 5473588 5473619 chrX 5473664 5473695 5 70 2.0 2.0 2.0 1.7 107 chrX 5473588 intron SPR + chrX 5473642 intron SPR + chrX 5473695 intron SPR + chrX_5_5470001 chrX_5470001 RAL-509 1749 chrX 5524849 5524869 chrX 5528712 5528732 412 6 3863 0.0 0.5 0.2 5.0 3883 chrX 5524849 intergenic snoRNA:Psi28S-3342 - chrX 5526790 intergenic not near genes chrX 5528732 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-509 1750 chrX 5615468 5615479 chrX 5615643 5615658 4 178 13.0 4.0 8.5 0.4 190 chrX 5615468 exon CG34434 - chrX 5615563 exon CG34434 - chrX 5615658 exon CG34434 - chrX_4_5615001 chrX_5615001 RAL-509 1751 chrX 5786581 5786603 chrX 5786664 5786686 5 83 0.5 1.0 0.8 2.8 105 chrX 5786581 intron CG42699 + chrX 5786634 intron CG42699 + chrX 5786686 intron CG42699 + chrX_5_5785001 chrX_5785001 RAL-509 1752 chrX 5798870 5798886 chrX 5799032 5799048 5 162 1.0 3.5 2.2 1.6 178 chrX 5798870 intergenic not near genes chrX 5798959 intergenic not near genes chrX 5799048 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-509 1753 chrX 5883816 5883831 chrX 5884050 5884072 pogo 6 239 2.0 2.5 2.2 1.9 256 chrX 5883816 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884072 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-509 1754 chrX 5883832 5883836 chrX 5884049 5884077 pogo 4 235 1.0 2.5 1.8 1.4 245 chrX 5883832 intron CR45668 - chrX 5883954 intron CR45668 - chrX 5884077 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-509 1755 chrX 5884168 5884193 chrX 5884409 5884434 pogo 12 241 0.0 1.5 0.8 6.7 266 chrX 5884168 intron CR45668 - chrX 5884301 intron CR45668 - chrX 5884434 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-509 1756 chrX 6118700 6118733 chrX 6118782 6118814 10 81 2.5 6.0 4.2 1.9 114 chrX 6118700 intron Ca-alpha1T - chrX 6118757 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_10_6115001 chrX_6115001 RAL-509 1757 chrX 6171589 6171616 chrX 6179022 6179049 Quasimodo 7 7433 2.0 3.0 2.5 2.0 7460 chrX 6171589 intron Ca-alpha1T - chrX 6175319 intron Ca-alpha1T - chrX 6179049 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-509 1758 chrX 6215340 6215366 chrX 6215423 6215449 7 83 2.0 4.0 3.0 1.8 109 chrX 6215340 intergenic not near genes chrX 6215394 intergenic not near genes chrX 6215449 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-509 1759 chrX 6306554 6306580 chrX 6306631 6306653 6 76 3.5 2.5 3.0 1.5 99 chrX 6306554 3` UTR CG3823 + chrX 6306604 3` UTR CG3823 + chrX 6306653 3` UTR CG3823 + chrX_6_6305001 chrX_6305001 RAL-509 1760 chrX 6307875 6307909 chrX 6307968 6307995 15 91 1.5 1.5 1.5 6.0 120 chrX 6307875 intergenic not near genes chrX 6307935 intergenic not near genes chrX 6307995 intergenic not near genes chrX_15_6305001 chrX_6305001 RAL-509 1761 chrX 6314417 6314451 chrX 6314493 6314512 11 74 3.0 1.0 2.0 3.7 95 chrX 6314417 intron CG15894 + chrX 6314464 intron CG15894 + chrX 6314512 intron CG15894 + chrX_11_6310001 chrX_6310001 RAL-509 1762 chrX 6335213 6335241 chrX 6337722 6337751 Tirant 4 2510 0.0 5.5 2.8 1.1 2538 chrX 6335213 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-509 1763 chrX 6392870 6392890 chrX 6397635 6397655 Doc 9 4763 2.0 3.5 2.8 2.4 4785 chrX 6392870 intergenic not near genes chrX 6395262 intergenic not near genes chrX 6397655 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-509 1764 chrX 6562817 6562837 chrX 6571298 6571316 Tirant 4 8481 6.5 1.5 4.0 0.8 8499 chrX 6562817 intron CG34417 + chrX 6567066 intron CG34417 + chrX 6571316 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-509 1765 chrX 6605482 6605504 chrX 6608504 6608526 Burdock 4 3022 2.0 3.5 2.8 1.1 3044 chrX 6605482 intron pigs + chrX 6607004 intron pigs + chrX 6608526 intron pigs + chrX_4_6605001 chrX_6605001 RAL-509 1766 chrX 7023609 7023627 chrX 7030990 7031017 Tabor 11 7387 1.5 2.5 2.0 3.7 7408 chrX 7023609 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031017 intron CG12541 - chrX_11_7025001 chrX_7025001 RAL-509 1767 chrX 7125246 7125279 chrX 7134404 7134438 roo 12 9159 0.5 2.5 1.5 4.8 9192 chrX 7125246 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134438 intergenic not near genes chrX_12_7125001 chrX_7125001 RAL-509 1768 chrX 7322898 7322920 chrX 7322981 7323004 7 84 3.0 1.0 2.0 2.3 106 chrX 7322898 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322951 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323004 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_7_7320001 chrX_7320001 RAL-509 1769 chrX 7702901 7702926 chrX 7703339 7703365 jockey 6 438 3.0 2.0 2.5 1.7 464 chrX 7702901 intron CHES-1-like - chrX 7703133 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-509 1770 chrX 7737163 7737184 chrX 7737245 7737266 6 80 3.5 2.5 3.0 1.5 103 chrX 7737163 5` UTR Tom40 + chrX 7737214 intron Tom40 + chrX 7737266 intron Tom40 + chrX_6_7735001 chrX_7735001 RAL-509 1771 chrX 7832434 7832460 chrX 7832523 7832548 5 89 1.0 1.0 1.0 2.5 114 chrX 7832434 intron CG1402 + chrX 7832491 intron CG1402 + chrX 7832548 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-509 1772 chrX 7845727 7845740 chrX 7847218 7847231 hopper2 4 1491 2.5 3.0 2.8 1.1 1504 chrX 7845727 intergenic not near genes chrX 7846479 intergenic not near genes chrX 7847231 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-509 1773 chrX 8079921 8079940 chrX 8080031 8080047 7 110 1.5 2.5 2.0 2.3 126 chrX 8079921 exon CG2254 - chrX 8079984 intron CG2254 - chrX 8080047 intron CG2254 - chrX_7_8075001 chrX_8075001 RAL-509 1774 chrX 8085572 8085603 chrX 8085658 8085689 5 85 2.0 1.0 1.5 2.0 117 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085689 intron,5` UTR CG2256 -,CR45535 + chrX_5_8085001 chrX_8085001 RAL-509 1775 chrX 8159683 8159716 chrX 8159765 8159798 5 82 2.0 3.0 2.5 1.4 115 chrX 8159683 intergenic GIIIspla2 +,CG15337 + chrX 8159740 intergenic CG15337 +,GIIIspla2 + chrX 8159798 intergenic CG15337 +,GIIIspla2 + chrX_5_8155001 chrX_8155001 RAL-509 1776 chrX 8364845 8364879 chrX 8365242 8365293 BS 4 401 2.5 0.0 1.2 1.8 448 chrX 8364845 intron nAChRalpha3 - chrX 8365069 intron nAChRalpha3 - chrX 8365293 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-509 1777 chrX 8708692 8708706 chrX 8708875 8708889 6 183 8.5 2.5 5.5 0.9 197 chrX 8708692 intergenic not near genes chrX 8708790 intergenic not near genes chrX 8708889 intergenic not near genes chrX_6_8705001 chrX_8705001 RAL-509 1778 chrX 8842579 8842596 chrX 8842681 8842698 5 102 4.0 2.5 3.2 1.2 119 chrX 8842579 intron CG12075 + chrX 8842638 intron CG12075 + chrX 8842698 intron CG12075 + chrX_5_8840001 chrX_8840001 RAL-509 1779 chrX 8860772 8860795 chrX 8860856 8860879 6 84 0.0 2.0 1.0 3.0 107 chrX 8860772 intron CG12075 + chrX 8860826 intron CG12075 + chrX 8860879 intron CG12075 + chrX_6_8860001 chrX_8860001 RAL-509 1780 chrX 8922328 8922361 chrX 8922762 8922794 jockey 6 432 4.5 4.0 4.2 1.2 466 chrX 8922328 intron rdgA + chrX 8922561 intron rdgA + chrX 8922794 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-509 1781 chrX 9058947 9058960 chrX 9059024 9059036 5 77 2.5 0.5 1.5 2.0 89 chrX 9058947 intron CG15365 - chrX 9058992 intron CG15365 - chrX 9059036 intron CG15365 - chrX_5_9055001 chrX_9055001 RAL-509 1782 chrX 9337950 9337970 chrX 9338042 9338055 8 90 1.0 2.0 1.5 3.2 105 chrX 9337950 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338055 exon CG34449 - chrX_8_9335001 chrX_9335001 RAL-509 1783 chrX 9439440 9439463 chrX 9439516 9439540 4 76 3.0 4.0 3.5 0.9 100 chrX 9439440 intron mgl - chrX 9439490 intron mgl - chrX 9439540 intron mgl - chrX_4_9435001 chrX_9435001 RAL-509 1784 chrX 9575806 9575819 chrX 9576113 9576143 mdg3 5 321 2.5 4.0 3.2 1.2 337 chrX 9575806 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-509 1785 chrX 9635158 9635167 chrX 9635216 9635247 4 72 2.0 1.0 1.5 1.6 89 chrX 9635158 intron l(1)G0232 - chrX 9635202 intron l(1)G0232 - chrX 9635247 intron l(1)G0232 - chrX_4_9635001 chrX_9635001 RAL-509 1786 chrX 9668724 9668749 chrX 9668801 9668816 6 75 2.5 3.5 3.0 1.5 92 chrX 9668724 3` UTR nej - chrX 9668770 3` UTR nej - chrX 9668816 3` UTR nej - chrX_6_9665001 chrX_9665001 RAL-509 1787 chrX 9791870 9791884 chrX 9791967 9791981 5 97 2.5 2.5 2.5 1.4 111 chrX 9791870 intron CG32698 + chrX 9791926 intron CG32698 + chrX 9791981 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-509 1788 chrX 9792800 9792806 chrX 9792877 9792883 5 77 0.0 2.5 1.2 2.3 83 chrX 9792800 intron CG32698 + chrX 9792842 intron CG32698 + chrX 9792883 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-509 1789 chrX 9925537 9925564 chrX 9925619 9925646 4 82 3.5 4.5 4.0 0.8 109 chrX 9925537 intergenic not near genes chrX 9925592 intergenic not near genes chrX 9925646 intergenic not near genes chrX_4_9925001 chrX_9925001 RAL-509 1790 chrX 10138217 10138248 chrX 10145721 10145752 412 4 7504 1.0 3.5 2.2 1.2 7535 chrX 10138217 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145752 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-509 1791 chrX 10248632 10248648 chrX 10248709 10248725 7 76 1.0 0.5 0.8 3.9 93 chrX 10248632 intron Hk - chrX 10248678 intron Hk - chrX 10248725 intron Hk - chrX_7_10245001 chrX_10245001 RAL-509 1792 chrX 10248651 10248659 chrX 10248708 10248736 4 72 1.0 0.5 0.8 2.2 85 chrX 10248651 intron Hk - chrX 10248694 intron Hk - chrX 10248736 intron Hk - chrX_4_10245001 chrX_10245001 RAL-509 1793 chrX 10285901 10285907 chrX 10286225 10286243 4 333 1.0 1.5 1.2 1.8 342 chrX 10285901 intron alpha-Man-I - chrX 10286072 intron alpha-Man-I - chrX 10286243 intron alpha-Man-I - chrX_4_10285001 chrX_10285001 RAL-509 1794 chrX 10287712 10287740 chrX 10291351 10291380 6 3640 15.5 13.0 14.2 0.4 3668 chrX 10287712 intron alpha-Man-I - chrX 10289546 intron alpha-Man-I - chrX 10291380 intron alpha-Man-I - chrX_6_10285001 chrX_10285001 RAL-509 1795 chrX 10306055 10306079 chrX 10306145 10306163 6 89 1.5 0.0 0.8 3.3 108 chrX 10306055 intron alpha-Man-I - chrX 10306109 intron alpha-Man-I - chrX 10306163 intron alpha-Man-I - chrX_6_10305001 chrX_10305001 RAL-509 1796 chrX 10401405 10401430 chrX 10401484 10401502 7 79 1.0 1.0 1.0 3.5 97 chrX 10401405 intron flw + chrX 10401454 intron flw + chrX 10401502 intron flw + chrX_7_10400001 chrX_10400001 RAL-509 1797 chrX 10446695 10446715 chrX 10446777 10446797 4 82 2.5 4.0 3.2 1.0 102 chrX 10446695 intron CG32683 - chrX 10446746 intron CG32683 - chrX 10446797 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-509 1798 chrX 10532513 10532527 chrX 10532591 10532598 4 76 2.0 4.0 3.0 1.0 85 chrX 10532513 intron spri - chrX 10532556 intron spri - chrX 10532598 intron spri - chrX_4_10530001 chrX_10530001 RAL-509 1799 chrX 10550855 10550885 chrX 10552322 10552352 hobo 15 1467 3.0 3.5 3.2 3.6 1497 chrX 10550855 intron spri - chrX 10551604 intron spri - chrX 10552352 intron spri - chrX_15_10550001 chrX_10550001 RAL-509 1800 chrX 10651629 10651642 chrX 10651745 10651758 6 116 0.0 2.0 1.0 3.0 129 chrX 10651629 intron X11Lbeta + chrX 10651694 intron X11Lbeta + chrX 10651758 intron X11Lbeta + chrX_6_10650001 chrX_10650001 RAL-509 1801 chrX 10686048 10686082 chrX 10691185 10691219 roo 8 5137 2.0 3.0 2.5 2.3 5171 chrX 10686048 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_8_10685001 chrX_10685001 RAL-509 1802 chrX 10719130 10719151 chrX 10719214 10719235 7 84 0.0 1.5 0.8 3.9 105 chrX 10719130 intron CG32676 - chrX 10719182 intron CG32676 - chrX 10719235 intron CG32676 - chrX_7_10715001 chrX_10715001 RAL-509 1803 chrX 10803034 10803044 chrX 10803119 10803129 6 85 9.5 4.5 7.0 0.8 95 chrX 10803034 intron Imp - chrX 10803082 intron Imp - chrX 10803129 intron Imp - chrX_6_10800001 chrX_10800001 RAL-509 1804 chrX 10925502 10925522 chrX 10925579 10925601 8 77 3.5 2.5 3.0 2.0 99 chrX 10925502 exon v + chrX 10925552 3` UTR v + chrX 10925601 3` UTR v + chrX_8_10925001 chrX_10925001 RAL-509 1805 chrX 11034289 11034315 chrX 11034619 11034645 13 329 4.5 1.5 3.0 3.2 356 chrX 11034289 intron CG42339 - chrX 11034467 intron CG42339 - chrX 11034645 intron CG42339 - chrX_13_11030001 chrX_11030001 RAL-509 1806 chrX 11184253 11184283 chrX 11189329 11189359 flea 4 5076 2.5 3.0 2.8 1.1 5106 chrX 11184253 intergenic not near genes chrX 11186806 intergenic not near genes chrX 11189359 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-509 1807 chrX 11205297 11205319 chrX 11205372 11205395 5 76 2.0 2.5 2.2 1.6 98 chrX 11205297 intergenic not near genes chrX 11205346 intergenic not near genes chrX 11205395 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-509 1808 chrX 11215032 11215063 chrX 11215353 11215384 8 321 1.5 4.0 2.8 2.1 352 chrX 11215032 intergenic not near genes chrX 11215208 intergenic not near genes chrX 11215384 intergenic not near genes chrX_8_11215001 chrX_11215001 RAL-509 1809 chrX 11254172 11254203 chrX 11254283 11254309 9 110 1.5 3.5 2.5 2.6 137 chrX 11254172 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254309 intron CG44422 - chrX_9_11250001 chrX_11250001 RAL-509 1810 chrX 11312073 11312093 chrX 11319426 11319440 Stalker2 4 7350 3.5 2.0 2.8 1.1 7367 chrX 11312073 intergenic not near genes chrX 11315756 intergenic not near genes chrX 11319440 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-509 1811 chrX 11379770 11379781 chrX 11379915 11379926 5 145 6.0 2.5 4.2 1.0 156 chrX 11379770 intron dlg1 + chrX 11379848 intron dlg1 + chrX 11379926 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-509 1812 chrX 11633417 11633449 chrX 11640470 11640503 297 9 7054 4.0 2.0 3.0 2.2 7086 chrX 11633417 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_9_11635001 chrX_11635001 RAL-509 1813 chrX 11719872 11719900 chrX 11719951 11719980 6 80 0.0 3.0 1.5 2.4 108 chrX 11719872 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719980 intergenic prtp +,Tango10 + chrX_6_11715001 chrX_11715001 RAL-509 1814 chrX 11922366 11922380 chrX 11922499 11922513 6 133 1.5 5.5 3.5 1.3 147 chrX 11922366 exon Sclp - chrX 11922440 intron Sclp - chrX 11922513 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-509 1815 chrX 12123329 12123346 chrX 12123625 12123644 8 296 7.5 9.0 8.2 0.9 315 chrX 12123329 intron Ten-a + chrX 12123486 intron Ten-a + chrX 12123644 intron Ten-a + chrX_8_12120001 chrX_12120001 RAL-509 1816 chrX 12202776 12202802 chrX 12202860 12202886 5 83 0.5 1.5 1.0 2.5 110 chrX 12202776 intron Ten-a + chrX 12202831 intron Ten-a + chrX 12202886 intron Ten-a + chrX_5_12200001 chrX_12200001 RAL-509 1817 chrX 12260078 12260102 chrX 12260168 12260191 9 89 2.5 3.5 3.0 2.2 113 chrX 12260078 intron Ten-a + chrX 12260134 intron Ten-a + chrX 12260191 intron Ten-a + chrX_9_12260001 chrX_12260001 RAL-509 1818 chrX 12272844 12272861 chrX 12272922 12272940 4 79 1.5 1.5 1.5 1.6 96 chrX 12272844 intron Ten-a + chrX 12272892 intron Ten-a + chrX 12272940 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-509 1819 chrX 12375491 12375501 chrX 12375589 12375599 5 98 4.0 1.5 2.8 1.3 108 chrX 12375491 intergenic Ir11a - chrX 12375545 intergenic Ir11a - chrX 12375599 exon Ir11a - chrX_5_12375001 chrX_12375001 RAL-509 1820 chrX 12442087 12442110 chrX 12442169 12442192 6 82 0.5 0.0 0.2 5.0 105 chrX 12442087 intron Pkcdelta + chrX 12442140 intron Pkcdelta + chrX 12442192 intron Pkcdelta + chrX_6_12440001 chrX_12440001 RAL-509 1821 chrX 12532647 12532661 chrX 12532793 12532807 4 146 3.0 0.0 1.5 1.6 160 chrX 12532647 intron CG43921 - chrX 12532727 intron CG43921 - chrX 12532807 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-509 1822 chrX 12930601 12930610 chrX 12937717 12937726 HMS-Beagle 4 7116 1.5 4.5 3.0 1.0 7125 chrX 12930601 intron fne + chrX 12934164 intron fne + chrX 12937726 intron fne + chrX_4_12930001 chrX_12930001 RAL-509 1823 chrX 12960763 12960796 chrX 12960844 12960877 13 81 2.0 1.0 1.5 5.2 114 chrX 12960763 3` UTR CG32642 + chrX 12960820 intergenic CG32642 + chrX 12960877 intergenic CG32642 + chrX_13_12960001 chrX_12960001 RAL-509 1824 chrX 13146598 13146610 chrX 13146686 13146698 7 87 2.5 1.0 1.8 2.5 100 chrX 13146598 intron CG32645 + chrX 13146648 intron CG32645 + chrX 13146698 intron CG32645 + chrX_7_13145001 chrX_13145001 RAL-509 1825 chrX 13172352 13172383 chrX 13172428 13172459 10 76 2.0 3.5 2.8 2.6 107 chrX 13172352 exon CG34411 - chrX 13172406 intron CG34411 - chrX 13172459 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-509 1826 chrX 13236886 13236895 chrX 13236971 13236979 4 85 0.0 1.5 0.8 2.2 93 chrX 13236886 intron mew - chrX 13236932 intron mew - chrX 13236979 intron mew - chrX_4_13235001 chrX_13235001 RAL-509 1827 chrX 13269202 13269233 chrX 13269278 13269309 5 75 0.0 0.0 0.0 5.0 107 chrX 13269202 intron HDAC4 - chrX 13269256 intron HDAC4 - chrX 13269309 intron HDAC4 - chrX_5_13265001 chrX_13265001 RAL-509 1828 chrX 13429464 13429493 chrX 13430610 13430642 jockey 8 1148 1.0 3.5 2.2 2.5 1178 chrX 13429464 intergenic not near genes chrX 13430053 intergenic not near genes chrX 13430642 intergenic not near genes chrX_8_13430001 chrX_13430001 RAL-509 1829 chrX 13442143 13442167 chrX 13442234 13442258 4 91 3.0 2.5 2.8 1.1 115 chrX 13442143 intergenic not near genes chrX 13442200 intergenic not near genes chrX 13442258 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-509 1830 chrX 13463652 13463671 chrX 13469229 13469248 mdg3 6 5577 3.5 2.0 2.8 1.6 5596 chrX 13463652 intron Neto + chrX 13466450 intron Neto + chrX 13469248 intron Neto + chrX_6_13465001 chrX_13465001 RAL-509 1831 chrX 13560562 13560590 chrX 13560643 13560671 5 81 3.5 1.0 2.2 1.6 109 chrX 13560562 intergenic not near genes chrX 13560616 intergenic not near genes chrX 13560671 intergenic not near genes chrX_5_13560001 chrX_13560001 RAL-509 1832 chrX 13650094 13650127 chrX 13650195 13650228 12 101 4.5 1.5 3.0 3.0 134 chrX 13650094 intron NFAT + chrX 13650161 intron NFAT + chrX 13650228 intron NFAT + chrX_12_13650001 chrX_13650001 RAL-509 1833 chrX 13843388 13843409 chrX 13843541 13843562 7 152 4.0 2.0 3.0 1.8 174 chrX 13843388 intron AMPdeam - chrX 13843475 intron AMPdeam - chrX 13843562 intron AMPdeam - chrX_7_13840001 chrX_13840001 RAL-509 1834 chrX 13934293 13934321 chrX 13934376 13934404 7 83 1.5 5.0 3.2 1.7 111 chrX 13934293 intron mamo - chrX 13934348 intron mamo - chrX 13934404 intron mamo - chrX_7_13930001 chrX_13930001 RAL-509 1835 chrX 13943282 13943299 chrX 13943371 13943390 6 90 0.0 5.5 2.8 1.6 108 chrX 13943282 intron mamo - chrX 13943336 intron mamo - chrX 13943390 intron mamo - chrX_6_13940001 chrX_13940001 RAL-509 1836 chrX 14105021 14105047 chrX 14114172 14114195 roo 6 9150 2.0 5.0 3.5 1.3 9174 chrX 14105021 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114195 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-509 1837 chrX 14156762 14156783 chrX 14156850 14156871 4 88 2.5 2.5 2.5 1.1 109 chrX 14156762 intergenic not near genes chrX 14156816 intergenic not near genes chrX 14156871 intergenic not near genes chrX_4_14155001 chrX_14155001 RAL-509 1838 chrX 14319847 14319873 chrX 14320633 14320658 5 785 1.5 2.5 2.0 1.7 811 chrX 14319847 intergenic not near genes chrX 14320252 intergenic not near genes chrX 14320658 intergenic not near genes chrX_5_14320001 chrX_14320001 RAL-509 1839 chrX 14416309 14416339 chrX 14421077 14421106 F-element 5 4768 0.0 1.5 0.8 2.8 4797 chrX 14416309 intron dpr8 + chrX 14418708 intron dpr8 + chrX 14421106 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-509 1840 chrX 14484968 14484985 chrX 14485057 14485074 8 89 0.0 2.5 1.2 3.6 106 chrX 14484968 intergenic not near genes chrX 14485021 intergenic not near genes chrX 14485074 intergenic not near genes chrX_8_14485001 chrX_14485001 RAL-509 1841 chrX 14516193 14516221 chrX 14516274 14516300 13 81 4.0 2.0 3.0 3.2 107 chrX 14516193 intergenic not near genes chrX 14516246 intergenic not near genes chrX 14516300 intergenic not near genes chrX_13_14515001 chrX_14515001 RAL-509 1842 chrX 14572879 14572911 chrX 14572967 14572989 6 86 2.0 0.0 1.0 3.0 110 chrX 14572879 intergenic not near genes chrX 14572934 intergenic not near genes chrX 14572989 intergenic not near genes chrX_6_14570001 chrX_14570001 RAL-509 1843 chrX 14636461 14636495 chrX 14641902 14641936 I-element 8 5439 4.5 2.0 3.2 1.9 5475 chrX 14636461 intron NetA - chrX 14639198 intron NetA - chrX 14641936 intron NetA - chrX_8_14635001 chrX_14635001 RAL-509 1844 chrX 14714044 14714062 chrX 14714126 14714128 6 78 0.0 5.0 2.5 1.7 84 chrX 14714044 intron NetB - chrX 14714086 intron NetB - chrX 14714128 intron NetB - chrX_6_14710001 chrX_14710001 RAL-509 1845 chrX 14818765 14818792 chrX 14823966 14823991 copia 8 5203 3.0 3.0 3.0 2.0 5226 chrX 14818765 intron rut - chrX 14821378 intron rut - chrX 14823991 intron rut - chrX_8_14820001 chrX_14820001 RAL-509 1846 chrX 14936857 14936885 chrX 14946114 14946142 roo 6 9256 1.0 1.5 1.2 2.7 9285 chrX 14936857 intron pdgy - chrX 14941500 intron pdgy - chrX 14946142 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-509 1847 chrX 14968087 14968098 chrX 14968166 14968177 4 79 1.5 3.5 2.5 1.1 90 chrX 14968087 intron eag + chrX 14968132 intron eag + chrX 14968177 intron eag + chrX_4_14965001 chrX_14965001 RAL-509 1848 chrX 14977435 14977453 chrX 14977530 14977546 4 98 0.5 1.0 0.8 2.2 111 chrX 14977435 intron eag + chrX 14977490 intron eag + chrX 14977546 intron eag + chrX_4_14975001 chrX_14975001 RAL-509 1849 chrX 15273718 15273735 chrX 15274869 15274886 1360 6 1153 2.5 3.5 3.0 1.5 1168 chrX 15273718 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274886 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-509 1850 chrX 15277646 15277666 chrX 15277731 15277751 5 85 1.0 4.0 2.5 1.4 105 chrX 15277646 intergenic not near genes chrX 15277698 intergenic not near genes chrX 15277751 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-509 1851 chrX 15369846 15369862 chrX 15369929 15369945 5 83 1.0 7.5 4.2 1.0 99 chrX 15369846 intron acj6 - chrX 15369896 intron acj6 - chrX 15369945 intron acj6 - chrX_5_15365001 chrX_15365001 RAL-509 1852 chrX 15413048 15413088 chrX 15417350 15417365 Juan 13 4297 0.5 2.5 1.5 5.2 4317 chrX 15413048 intron Cngl - chrX 15415206 intron Cngl - chrX 15417365 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-509 1853 chrX 15421925 15421944 chrX 15423432 15423449 pogo 8 1506 3.0 2.0 2.5 2.3 1524 chrX 15421925 intron Cngl - chrX 15422687 intron Cngl - chrX 15423449 intron Cngl - chrX_8_15420001 chrX_15420001 RAL-509 1854 chrX 15435692 15435701 chrX 15436125 15436134 rover 4 432 3.5 7.5 5.5 0.6 442 chrX 15435692 intron Cngl - chrX 15435913 intron Cngl - chrX 15436134 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-509 1855 chrX 15678035 15678068 chrX 15678112 15678145 15 76 1.5 1.5 1.5 6.0 110 chrX 15678035 intergenic CG12708 + chrX 15678090 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_15_15675001 chrX_15675001 RAL-509 1856 chrX 15681395 15681428 chrX 15681477 15681510 10 82 3.5 0.0 1.8 3.6 115 chrX 15681395 intergenic not near genes chrX 15681452 intergenic not near genes chrX 15681510 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-509 1857 chrX 16492648 16492677 chrX 16498224 16498254 mdg3 8 5576 2.0 2.0 2.0 2.7 5606 chrX 16492648 intron para - chrX 16495451 intron para - chrX 16498254 intron para - chrX_8_16495001 chrX_16495001 RAL-509 1858 chrX 16533818 16533842 chrX 16533898 16533922 5 80 0.0 1.5 0.8 2.8 104 chrX 16533818 intergenic not near genes chrX 16533870 intergenic not near genes chrX 16533922 intergenic not near genes chrX_5_16530001 chrX_16530001 RAL-509 1859 chrX 16623481 16623503 chrX 16623567 16623589 6 86 3.5 0.5 2.0 2.0 108 chrX 16623481 intergenic not near genes chrX 16623535 intergenic Rok - chrX 16623589 intergenic Rok - chrX_6_16620001 chrX_16620001 RAL-509 1860 chrX 16785277 16785308 chrX 16785381 16785412 9 104 1.5 1.5 1.5 3.6 135 chrX 16785277 3` UTR CG9609 - chrX 16785344 3` UTR CG9609 - chrX 16785412 3` UTR CG9609 - chrX_9_16785001 chrX_16785001 RAL-509 1861 chrX 16815373 16815388 chrX 16815448 16815464 6 76 3.0 1.0 2.0 2.0 91 chrX 16815373 intron CG4829 + chrX 16815418 intron CG4829 + chrX 16815464 intron CG4829 + chrX_6_16815001 chrX_16815001 RAL-509 1862 chrX 16965334 16965369 chrX 16966027 16966062 8 692 1.5 1.0 1.2 3.6 728 chrX 16965334 intron CG9086 - chrX 16965698 intron CG9086 - chrX 16966062 intron CG9086 - chrX_8_16965001 chrX_16965001 RAL-509 1863 chrX 17088191 17088201 chrX 17088784 17088794 4 593 0.0 1.5 0.8 2.2 603 chrX 17088191 intergenic not near genes chrX 17088492 intergenic not near genes chrX 17088794 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-509 1864 chrX 17110304 17110333 chrX 17110426 17110455 8 122 0.0 1.0 0.5 5.3 151 chrX 17110304 intron CG5004 + chrX 17110380 intron CG5004 + chrX 17110455 intron CG5004 + chrX_8_17110001 chrX_17110001 RAL-509 1865 chrX 17111240 17111259 chrX 17111362 17111381 7 122 1.0 1.0 1.0 3.5 141 chrX 17111240 intron CG5004 + chrX 17111310 intron CG5004 + chrX 17111381 intron CG5004 + chrX_7_17110001 chrX_17110001 RAL-509 1866 chrX 17211445 17211460 chrX 17212148 17212164 INE-1 8 704 5.5 19.5 12.5 0.6 719 chrX 17211445 intergenic not near genes chrX 17211804 intergenic not near genes chrX 17212164 intergenic CG18258 + chrX_8_17210001 chrX_17210001 RAL-509 1867 chrX 17229957 17229966 chrX 17230060 17230069 5 103 2.0 1.5 1.8 1.8 112 chrX 17229957 intergenic CG10597 - chrX 17230013 intergenic CG10597 - chrX 17230069 intergenic CG10597 - chrX_5_17230001 chrX_17230001 RAL-509 1868 chrX 17234266 17234285 chrX 17234360 17234382 4 93 3.0 0.0 1.5 1.6 116 chrX 17234266 intron f + chrX 17234324 intron f + chrX 17234382 intron f + chrX_4_17230001 chrX_17230001 RAL-509 1869 chrX 17319550 17319576 chrX 17319639 17319662 10 87 2.0 1.0 1.5 4.0 112 chrX 17319550 intron B-H2 + chrX 17319606 intron B-H2 + chrX 17319662 intron B-H2 + chrX_10_17315001 chrX_17315001 RAL-509 1870 chrX 17352594 17352620 chrX 17352695 17352723 8 102 0.0 3.5 1.8 2.9 129 chrX 17352594 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352723 intergenic not near genes chrX_8_17350001 chrX_17350001 RAL-509 1871 chrX 17678627 17678642 chrX 17678718 17678734 8 91 5.5 0.0 2.8 2.1 107 chrX 17678627 intron chas - chrX 17678680 intron chas - chrX 17678734 intron chas - chrX_8_17675001 chrX_17675001 RAL-509 1872 chrX 17680889 17680925 chrX 17680966 17681001 6 76 2.0 3.0 2.5 1.7 112 chrX 17680889 intron chas - chrX 17680945 intron chas - chrX 17681001 intron chas - chrX_6_17680001 chrX_17680001 RAL-509 1873 chrX 17782224 17782239 chrX 17782322 17782337 6 98 3.5 2.0 2.8 1.6 113 chrX 17782224 intergenic not near genes chrX 17782280 intergenic not near genes chrX 17782337 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-509 1874 chrX 17782565 17782589 chrX 17782654 17782673 7 87 3.0 1.5 2.2 2.2 108 chrX 17782565 intergenic not near genes chrX 17782619 intergenic not near genes chrX 17782673 intergenic not near genes chrX_7_17780001 chrX_17780001 RAL-509 1875 chrX 17846284 17846307 chrX 17846368 17846391 6 84 1.5 2.0 1.8 2.1 107 chrX 17846284 intron Ucp4A + chrX 17846338 intron Ucp4A + chrX 17846391 intron Ucp4A + chrX_6_17845001 chrX_17845001 RAL-509 1876 chrX 17911856 17911877 chrX 17911944 17911965 5 88 0.5 2.0 1.2 2.3 109 chrX 17911856 intron CG6847 + chrX 17911910 intron CG6847 + chrX 17911965 intron CG6847 + chrX_5_17910001 chrX_17910001 RAL-509 1877 chrX 18194072 18194102 chrX 18194607 18194637 BS 9 534 3.0 2.5 2.8 2.4 565 chrX 18194072 intron Frq2 + chrX 18194354 intron Frq2 + chrX 18194637 intron Frq2 + chrX_9_18190001 chrX_18190001 RAL-509 1878 chrX 18427391 18427409 chrX 18427800 18427820 7 410 1.5 5.0 3.2 1.7 429 chrX 18427391 intergenic CG42323 + chrX 18427606 intergenic not near genes chrX 18427820 intergenic not near genes chrX_7_18425001 chrX_18425001 RAL-509 1879 chrX 18429493 18429514 chrX 18434804 18434825 Transpac 6 5311 4.0 5.0 4.5 1.1 5332 chrX 18429493 intergenic not near genes chrX 18432159 intergenic not near genes chrX 18434825 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-509 1880 chrX 18555393 18555407 chrX 18556914 18556928 transib2 5 1521 1.5 2.0 1.8 1.8 1535 chrX 18555393 intron Bx + chrX 18556160 intron Bx + chrX 18556928 intron Bx + chrX_5_18555001 chrX_18555001 RAL-509 1881 chrX 18645017 18645048 chrX 18645115 18645146 6 94 2.5 2.5 2.5 1.7 129 chrX 18645017 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645146 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-509 1882 chrX 18820108 18820131 chrX 18820250 18820273 5 142 1.5 4.0 2.8 1.3 165 chrX 18820108 intron CG42450 + chrX 18820190 intron CG42450 + chrX 18820273 intron CG42450 + chrX_5_18820001 chrX_18820001 RAL-509 1883 chrX 18957073 18957102 chrX 18965736 18965765 roo 5 8663 1.0 0.0 0.5 3.3 8692 chrX 18957073 intron CG43759 + chrX 18961419 intron CG43759 + chrX 18965765 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-509 1884 chrX 19060407 19060437 chrX 19065191 19065221 Doc 7 4784 2.5 2.5 2.5 2.0 4814 chrX 19060407 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065221 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-509 1885 chrX 19124436 19124450 chrX 19124524 19124537 5 86 1.0 0.0 0.5 3.3 101 chrX 19124436 intergenic CG15882 - chrX 19124486 intergenic CG15882 - chrX 19124537 intergenic CG15882 -,tgy - chrX_5_19120001 chrX_19120001 RAL-509 1886 chrX 19131966 19131999 chrX 19132049 19132082 10 83 3.0 2.5 2.8 2.6 116 chrX 19131966 intergenic not near genes chrX 19132024 intergenic not near genes chrX 19132082 intergenic not near genes chrX_10_19130001 chrX_19130001 RAL-509 1887 chrX 19136562 19136584 chrX 19143478 19143503 412 5 6918 2.5 3.0 2.8 1.3 6941 chrX 19136562 intergenic not near genes chrX 19140032 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-509 1888 chrX 19176208 19176239 chrX 19176291 19176322 5 84 4.0 2.5 3.2 1.2 114 chrX 19176208 3` UTR CG7556 - chrX 19176265 3` UTR CG7556 - chrX 19176322 3` UTR CG7556 - chrX_5_19175001 chrX_19175001 RAL-509 1889 chrX 19182037 19182047 chrX 19182128 19182159 4 106 1.5 0.0 0.8 2.2 122 chrX 19182037 intergenic CG7453 + chrX 19182098 intergenic CG7453 + chrX 19182159 intergenic CG7453 + chrX_4_19180001 chrX_19180001 RAL-509 1890 chrX 19281001 19281031 chrX 19281130 19281159 5 128 0.0 0.5 0.2 4.2 158 chrX 19281001 intergenic CG8034 - chrX 19281080 intergenic CG8034 - chrX 19281159 intergenic CG8034 - chrX_5_19280001 chrX_19280001 RAL-509 1891 chrX 19380164 19380181 chrX 19380405 19380422 pogo 6 241 4.5 1.5 3.0 1.5 258 chrX 19380164 intron kek5 + chrX 19380293 intron kek5 + chrX 19380422 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-509 1892 chrX 19472120 19472156 chrX 19472689 19472720 jockey 10 566 1.5 4.0 2.8 2.6 600 chrX 19472120 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472720 intergenic not near genes chrX_10_19470001 chrX_19470001 RAL-509 1893 chrX 19662032 19662056 chrX 19662255 19662278 7 223 1.0 1.5 1.2 3.2 246 chrX 19662032 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662278 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-509 1894 chrX 19710078 19710098 chrX 19711857 19711884 S-element 8 1784 4.0 3.5 3.8 1.7 1806 chrX 19710078 intron meso18E - chrX 19710981 intron meso18E - chrX 19711884 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-509 1895 chrX 19983862 19983893 chrX 19983942 19983973 7 80 0.5 0.5 0.5 4.7 111 chrX 19983862 intergenic not near genes chrX 19983918 intergenic not near genes chrX 19983973 intergenic not near genes chrX_7_19980001 chrX_19980001 RAL-509 1896 chrX 20014894 20014915 chrX 20017810 20017831 7 2916 17.0 21.5 19.2 0.3 2937 chrX 20014894 intron Dop2R - chrX 20016362 intron Dop2R - chrX 20017831 intron Dop2R - chrX_7_20015001 chrX_20015001 RAL-509 1897 chrX 20041536 20041566 chrX 20041616 20041646 7 80 1.5 1.5 1.5 2.8 110 chrX 20041536 intron Dop2R - chrX 20041591 intron Dop2R - chrX 20041646 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-509 1898 chrX 20069268 20069296 chrX 20069399 20069409 5 128 1.0 3.0 2.0 1.7 141 chrX 20069268 intergenic not near genes chrX 20069338 intergenic not near genes chrX 20069409 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-509 1899 chrX 20105195 20105222 chrX 20105305 20105326 10 105 27.5 28.0 27.8 0.3 131 chrX 20105195 intergenic not near genes chrX 20105260 intergenic not near genes chrX 20105326 intergenic not near genes chrX_10_20105001 chrX_20105001 RAL-509 1900 chrX 20312880 20312909 chrX 20312958 20312987 10 78 1.5 1.5 1.5 4.0 107 chrX 20312880 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312987 intron CG1504 - chrX_10_20310001 chrX_20310001 RAL-509 1901 chrX 20359134 20359171 chrX 20359212 20359249 7 77 2.5 0.5 1.5 2.8 115 chrX 20359134 intergenic not near genes chrX 20359192 intergenic not near genes chrX 20359249 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-509 1902 chrX 20377328 20377348 chrX 20378791 20378813 hobo 11 1465 3.0 1.0 2.0 3.7 1485 chrX 20377328 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378813 intergenic not near genes chrX_11_20375001 chrX_20375001 RAL-509 1903 chrX 20468035 20468040 chrX 20468123 20468129 5 88 2.0 0.0 1.0 2.5 94 chrX 20468035 intron GstT3 + chrX 20468082 intron GstT3 + chrX 20468129 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-509 1904 chrX 20504124 20504154 chrX 20505645 20505665 transib2 4 1518 2.0 3.0 2.5 1.1 1541 chrX 20504124 intron RhoGAP19D - chrX 20504894 intron RhoGAP19D - chrX 20505665 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-509 1905 chrX 20528599 20528632 chrX 20528947 20528950 6 343 2.5 1.5 2.0 2.0 351 chrX 20528599 intergenic not near genes chrX 20528774 intergenic not near genes chrX 20528950 intergenic not near genes chrX_6_20525001 chrX_20525001 RAL-509 1906 chrX 20539517 20539518 chrX 20539822 20539833 4 321 1.0 3.0 2.0 1.3 316 chrX 20539517 intron RunxB + chrX 20539675 intron RunxB + chrX 20539833 intron RunxB + chrX_4_20535001 chrX_20535001 RAL-509 1907 chrX 20665062 20665089 chrX 20665148 20665175 8 85 1.5 6.5 4.0 1.6 113 chrX 20665062 intron CG1835 + chrX 20665118 intron CG1835 + chrX 20665175 intron CG1835 + chrX_8_20665001 chrX_20665001 RAL-509 1908 chrX 20710418 20710437 chrX 20710495 20710514 7 77 0.0 1.5 0.8 3.9 96 chrX 20710418 intergenic not near genes chrX 20710466 intergenic not near genes chrX 20710514 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-509 1909 chrX 20897937 20897965 chrX 20898027 20898043 5 85 0.5 0.0 0.2 4.2 106 chrX 20897937 intron shakB - chrX 20897990 intron shakB - chrX 20898043 intron shakB - chrX_5_20895001 chrX_20895001 RAL-509 1910 chrX 20940718 20940750 chrX 20942187 20942219 hobo 12 1468 3.5 1.5 2.5 3.4 1501 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942219 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-509 1911 chrX 21029797 21029803 chrX 21029938 21029944 6 141 2.0 2.0 2.0 2.0 147 chrX 21029797 3` UTR CG1529 - chrX 21029870 3` UTR CG1529 - chrX 21029944 3` UTR CG1529 - chrX_6_21025001 chrX_21025001 RAL-509 1912 chrX 21042567 21042588 chrX 21045352 21045374 12 2786 20.0 17.5 18.8 0.6 2807 chrX 21042567 exon Mgstl + chrX 21043970 exon,3` UTR Mgstl +,CR44431 - chrX 21045374 intron Cbs + chrX_12_21040001 chrX_21040001 RAL-509 1913 chrX 21086129 21086165 chrX 21087158 21087194 jockey 8 1028 1.5 1.5 1.5 3.2 1065 chrX 21086129 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087194 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-509 1914 chrX 21088042 21088075 chrX 21088173 21088207 5 131 3.5 2.0 2.8 1.3 165 chrX 21088042 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088207 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-509 1915 chrX 21264735 21264764 chrX 21264811 21264840 6 76 3.0 2.0 2.5 1.7 105 chrX 21264735 intron CG32521 - chrX 21264788 intron CG32521 - chrX 21264840 intron CG32521 - chrX_6_21260001 chrX_21260001 RAL-509 1916 chrX 21458705 21458726 chrX 21464141 21464161 Ivk 8 5436 0.0 7.0 3.5 1.8 5456 chrX 21458705 intergenic not near genes chrX 21461433 intergenic not near genes chrX 21464161 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-509 1917 chrX 21500561 21500585 chrX 21500762 21500786 4 200 0.0 0.0 0.0 4.0 225 chrX 21500561 intron CR45082 - chrX 21500674 intron CR45082 - chrX 21500786 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-509 1918 chrX 21516997 21517018 chrX 21517075 21517097 4 78 1.5 2.5 2.0 1.3 100 chrX 21516997 intron CR45082 - chrX 21517047 intron CR45082 - chrX 21517097 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-509 1919 chrX 22478883 22478898 chrX 22479016 22479030 6 133 0.0 2.0 1.0 3.0 147 chrX 22478883 intron CG12576 - chrX 22478956 intron CG12576 - chrX 22479030 intron CG12576 - chrX_6_22475001 chrX_22475001 RAL-509 1920 chrX 22506982 22507015 chrX 22507067 22507100 7 85 3.0 2.5 2.8 1.8 118 chrX 22506982 intron l(1)G0196 + chrX 22507041 intron l(1)G0196 + chrX 22507100 intron l(1)G0196 + chrX_7_22505001 chrX_22505001 RAL-509 1921 chrX 22564559 22564577 chrX 22575131 22575149 jockey 4 10573 10.5 4.5 7.5 0.5 10590 chrX 22564559 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575149 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-509 1922 chrX 22585516 22585528 chrX 22585598 22585611 4 83 2.0 3.0 2.5 1.1 95 chrX 22585516 intron Cda4 - chrX 22585564 intron Cda4 - chrX 22585611 intron Cda4 - chrX_4_22585001 chrX_22585001 RAL-509 1923 chrX 22646537 22646550 chrX 22646637 22646650 4 100 2.0 0.0 1.0 2.0 113 chrX 22646537 intergenic not near genes chrX 22646594 intergenic not near genes chrX 22646650 intergenic not near genes chrX_4_22645001 chrX_22645001 RAL-509 1924 chrX 22677298 22677328 chrX 22677507 22677537 13 209 1.0 5.5 3.2 3.1 239 chrX 22677298 intron CR44997 + chrX 22677418 intron CR44997 + chrX 22677537 intron CR44997 + chrX_13_22675001 chrX_22675001 RAL-509 1925 chrX 22697509 22697521 chrX 22701806 22701818 Juan 10 4297 2.5 5.5 4.0 2.0 4309 chrX 22697509 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701818 intron CR44997 + chrX_10_22695001 chrX_22695001 RAL-509 1926 chrX 22771505 22771539 chrX 22774796 22774830 297 5 3291 5.5 3.0 4.2 1.0 3325 chrX 22771505 intron CR44997 + chrX 22773168 intron CR44997 + chrX 22774830 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-509 1927 chrX 22784081 22784101 chrX 22784164 22784184 5 83 4.0 0.5 2.2 1.6 103 chrX 22784081 intron CR44997 + chrX 22784132 intron CR44997 + chrX 22784184 intron CR44997 + chrX_5_22780001 chrX_22780001 RAL-509 1928 chrX 22785605 22785642 chrX 22785696 22785733 16 88 1.5 1.5 1.5 6.4 128 chrX 22785605 intron CR44997 + chrX 22785669 intron CR44997 + chrX 22785733 intron CR44997 + chrX_16_22785001 chrX_22785001 RAL-509 1929 chrX 22922515 22922546 chrX 22922595 22922611 6 77 1.5 5.0 3.2 1.4 96 chrX 22922515 intergenic not near genes chrX 22922563 intergenic not near genes chrX 22922611 intergenic not near genes chrX_6_22920001 chrX_22920001 RAL-509 1930 chrX 22987107 22987136 chrX 22989766 22989795 Burdock 5 2659 1.0 1.5 1.2 2.3 2688 chrX 22987107 intron,intron stnA -,stnB - chrX 22988451 intron,intron stnA -,stnB - chrX 22989795 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-509 1931 chrX 22992394 22992428 chrX 22992525 22992559 10 131 2.0 1.5 1.8 3.6 165 chrX 22992394 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992559 intron,intron stnA -,stnB - chrX_10_22990001 chrX_22990001 RAL-509 1932 chrX 22996314 22996328 chrX 23003546 23003560 roo 5 7232 3.5 1.5 2.5 1.4 7246 chrX 22996314 intron,intron stnA -,stnB - chrX 22999937 intron,intron stnA -,stnB - chrX 23003560 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-509 1933 chrY 311343 311346 chrY 311460 311463 5 117 2.5 1.5 2.0 1.7 120 chrY 311343 intergenic not near genes chrY 311403 intergenic not near genes chrY 311463 intergenic not near genes chrY_5_310001 chrY_310001 RAL-509 1934 chrY 975597 975816 chrY 975714 975896 10 131 91.0 74.0 82.5 0.1 299 chrY 975597 intergenic not near genes chrY 975746 intergenic not near genes chrY 975896 intergenic not near genes chrY_10_975001 chrY_975001 RAL-509