SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47450 47486 chr2L 52575 52587 jockey 18 5122 8.0 9.0 8.5 1.9 5137 chr2L 47450 intron Cda5 - chr2L 50018 intron Cda5 - chr2L 52587 intron Cda5 - chr2L_18_50001 chr2L_50001 RAL-502 2 chr2L 263279 263330 chr2L 263445 263496 17 165 1.5 7.0 4.2 3.3 217 chr2L 263279 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263496 intron,3` UTR CG3645 -,CG17075 - chr2L_17_260001 chr2L_260001 RAL-502 3 chr2L 325134 325153 chr2L 325230 325238 6 92 4.5 13.5 9.0 0.6 104 chr2L 325134 intron Plc21C + chr2L 325186 intron Plc21C + chr2L 325238 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-502 4 chr2L 347865 347915 chr2L 355385 355435 blood 13 7519 5.0 6.5 5.8 1.9 7570 chr2L 347865 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355435 3` UTR Plc21C + chr2L_13_350001 chr2L_350001 RAL-502 5 chr2L 371422 371457 chr2L 371521 371556 9 99 2.5 9.0 5.8 1.3 134 chr2L 371422 intergenic not near genes chr2L 371489 intergenic not near genes chr2L 371556 intergenic not near genes chr2L_9_370001 chr2L_370001 RAL-502 6 chr2L 590605 590654 chr2L 590721 590732 8 114 3.0 3.0 3.0 2.0 127 chr2L 590605 intron Gsc - chr2L 590668 intron Gsc - chr2L 590732 intron Gsc - chr2L_8_590001 chr2L_590001 RAL-502 7 chr2L 630288 630332 chr2L 630399 630407 11 102 2.0 2.0 2.0 3.7 119 chr2L 630288 intergenic not near genes chr2L 630348 intergenic not near genes chr2L 630407 intergenic not near genes chr2L_11_630001 chr2L_630001 RAL-502 8 chr2L 686912 686937 chr2L 695962 695997 roo 6 9058 4.0 5.0 4.5 1.1 9085 chr2L 686912 intron ds - chr2L 691454 intron ds - chr2L 695997 intron ds - chr2L_6_690001 chr2L_690001 RAL-502 9 chr2L 764535 764576 chr2L 764655 764683 12 118 2.0 3.5 2.8 3.2 148 chr2L 764535 intergenic not near genes chr2L 764609 intergenic not near genes chr2L 764683 intergenic not near genes chr2L_12_760001 chr2L_760001 RAL-502 10 chr2L 770460 770494 chr2L 772247 772251 Bari1 10 1786 3.5 4.5 4.0 2.0 1791 chr2L 770460 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772251 intergenic CR44614 + chr2L_10_770001 chr2L_770001 RAL-502 11 chr2L 775788 775803 chr2L 775926 775933 7 155 7.5 3.0 5.2 1.1 145 chr2L 775788 intergenic not near genes chr2L 775860 intergenic not near genes chr2L 775933 intergenic not near genes chr2L_7_775001 chr2L_775001 RAL-502 12 chr2L 906528 906573 chr2L 906626 906675 12 98 0.0 2.5 1.2 5.5 147 chr2L 906528 intergenic not near genes chr2L 906602 intergenic not near genes chr2L 906675 intergenic not near genes chr2L_12_905001 chr2L_905001 RAL-502 13 chr2L 922443 922495 chr2L 922544 922596 8 101 2.0 1.5 1.8 2.9 153 chr2L 922443 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922596 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-502 14 chr2L 927868 927878 chr2L 928016 928043 4 160 5.5 2.0 3.8 0.8 175 chr2L 927868 intron CG4341 + chr2L 927956 intron CG4341 + chr2L 928043 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-502 15 chr2L 964539 964574 chr2L 964642 964678 16 104 4.0 5.0 4.5 2.9 139 chr2L 964539 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964678 intergenic not near genes chr2L_16_960001 chr2L_960001 RAL-502 16 chr2L 976742 976780 chr2L 976828 976877 13 95 4.5 2.5 3.5 2.9 135 chr2L 976742 intergenic not near genes chr2L 976810 intergenic not near genes chr2L 976877 intergenic not near genes chr2L_13_975001 chr2L_975001 RAL-502 17 chr2L 976862 976894 chr2L 984517 984533 roo 8 7653 3.0 2.5 2.8 2.1 7671 chr2L 976862 intergenic not near genes chr2L 980698 intergenic not near genes chr2L 984533 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-502 18 chr2L 1035550 1035588 chr2L 1035646 1035682 4 96 9.5 4.5 7.0 0.5 132 chr2L 1035550 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035682 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-502 19 chr2L 1042600 1042612 chr2L 1042697 1042709 4 95 2.0 0.0 1.0 2.0 109 chr2L 1042600 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-502 20 chr2L 1060212 1060228 chr2L 1060279 1060322 8 86 11.5 13.0 12.2 0.6 110 chr2L 1060212 intron S - chr2L 1060267 intron S - chr2L 1060322 intron S - chr2L_8_1060001 chr2L_1060001 RAL-502 21 chr2L 1066082 1066122 chr2L 1066178 1066220 10 97 19.5 18.5 19.0 0.5 138 chr2L 1066082 intron S - chr2L 1066151 intron S - chr2L 1066220 intron S - chr2L_10_1065001 chr2L_1065001 RAL-502 22 chr2L 1073585 1073611 chr2L 1073680 1073704 7 100 15.0 13.0 14.0 0.5 119 chr2L 1073585 intron S - chr2L 1073644 intron S - chr2L 1073704 intron S - chr2L_7_1070001 chr2L_1070001 RAL-502 23 chr2L 1093142 1093183 chr2L 1093240 1093281 6 95 12.0 17.5 14.8 0.4 139 chr2L 1093142 intron CG4629 - chr2L 1093212 intron CG4629 - chr2L 1093281 intron CG4629 - chr2L_6_1090001 chr2L_1090001 RAL-502 24 chr2L 1156841 1156884 chr2L 1156966 1156966 6 112 4.0 6.0 5.0 1.0 125 chr2L 1156841 intron capt - chr2L 1156904 intron capt - chr2L 1156966 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-502 25 chr2L 1164256 1164268 chr2L 1164340 1164374 5 101 14.0 8.5 11.2 0.4 118 chr2L 1164256 intergenic IntS14 +,CG5080 - chr2L 1164315 intergenic IntS14 +,CG5080 - chr2L 1164374 intergenic IntS14 +,CG5080 - chr2L_5_1160001 chr2L_1160001 RAL-502 26 chr2L 1215323 1215579 chr2L 1215452 1215675 8 95 14.0 17.0 15.5 0.5 352 chr2L 1215323 intergenic CR45346 - chr2L 1215499 intergenic CR45346 - chr2L 1215675 intergenic CR45346 - chr2L_8_1215001 chr2L_1215001 RAL-502 27 chr2L 1220108 1220162 chr2L 1227593 1227648 blood 21 7484 3.5 3.0 3.2 5.0 7540 chr2L 1220108 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227648 intron CG42329 + chr2L_21_1220001 chr2L_1220001 RAL-502 28 chr2L 1244400 1244436 chr2L 1244495 1244533 5 97 10.5 11.0 10.8 0.4 133 chr2L 1244400 intergenic not near genes chr2L 1244466 intergenic not near genes chr2L 1244533 intergenic not near genes chr2L_5_1240001 chr2L_1240001 RAL-502 29 chr2L 1261139 1261253 chr2L 1261241 1261344 5 96 0.0 0.0 0.0 5.0 205 chr2L 1261139 intron robo3 + chr2L 1261242 intron robo3 + chr2L 1261344 intron robo3 + chr2L_5_1260001 chr2L_1260001 RAL-502 30 chr2L 1319224 1319238 chr2L 1319332 1319344 4 107 13.5 16.0 14.8 0.3 120 chr2L 1319224 intergenic not near genes chr2L 1319284 intergenic not near genes chr2L 1319344 intergenic not near genes chr2L_4_1315001 chr2L_1315001 RAL-502 31 chr2L 1436606 1436646 chr2L 1436712 1436745 7 98 16.0 14.5 15.2 0.4 139 chr2L 1436606 intergenic not near genes chr2L 1436676 intergenic not near genes chr2L 1436745 intergenic not near genes chr2L_7_1435001 chr2L_1435001 RAL-502 32 chr2L 1484763 1484793 chr2L 1484862 1484892 6 99 2.0 3.5 2.8 1.6 129 chr2L 1484763 intergenic not near genes chr2L 1484828 intergenic not near genes chr2L 1484892 intergenic not near genes chr2L_6_1480001 chr2L_1480001 RAL-502 33 chr2L 1528497 1528512 chr2L 1528597 1528611 5 99 16.0 14.5 15.2 0.3 114 chr2L 1528497 intergenic not near genes chr2L 1528554 intergenic not near genes chr2L 1528611 intergenic not near genes chr2L_5_1525001 chr2L_1525001 RAL-502 34 chr2L 1528513 1528547 chr2L 1528596 1528647 11 94 13.0 13.5 13.2 0.8 134 chr2L 1528513 intergenic not near genes chr2L 1528580 intergenic not near genes chr2L 1528647 intergenic not near genes chr2L_11_1525001 chr2L_1525001 RAL-502 35 chr2L 1536501 1536525 chr2L 1536625 1536671 10 144 0.0 3.0 1.5 4.0 170 chr2L 1536501 intergenic not near genes chr2L 1536586 intergenic not near genes chr2L 1536671 intergenic not near genes chr2L_10_1535001 chr2L_1535001 RAL-502 36 chr2L 1552657 1552661 chr2L 1552898 1552902 4 241 8.5 0.5 4.5 0.7 245 chr2L 1552657 intergenic not near genes chr2L 1552780 intergenic not near genes chr2L 1552902 intergenic not near genes chr2L_4_1550001 chr2L_1550001 RAL-502 37 chr2L 1570688 1570717 chr2L 1573580 1573608 F-element 12 2892 6.5 6.5 6.5 1.6 2920 chr2L 1570688 intron haf + chr2L 1572148 intron haf + chr2L 1573608 intron haf + chr2L_12_1570001 chr2L_1570001 RAL-502 38 chr2L 1591862 1591893 chr2L 1591966 1591997 5 104 11.0 12.0 11.5 0.4 135 chr2L 1591862 intron haf + chr2L 1591930 intron haf + chr2L 1591997 intron haf + chr2L_5_1590001 chr2L_1590001 RAL-502 39 chr2L 1603946 1603955 chr2L 1604069 1604076 4 122 3.5 4.0 3.8 0.8 130 chr2L 1603946 intron,intron haf +,CG31935 - chr2L 1604011 intron,intron haf +,CG31935 - chr2L 1604076 intron,intron haf +,CG31935 - chr2L_4_1600001 chr2L_1600001 RAL-502 40 chr2L 1678955 1679008 chr2L 1686440 1686492 blood 11 7484 2.0 8.0 5.0 1.8 7537 chr2L 1678955 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686492 intron chinmo + chr2L_11_1680001 chr2L_1680001 RAL-502 41 chr2L 1711344 1711383 chr2L 1711683 1711712 mdg3 13 336 4.5 4.0 4.2 2.5 368 chr2L 1711344 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_13_1710001 chr2L_1710001 RAL-502 42 chr2L 1792194 1792235 chr2L 1792294 1792335 9 99 9.5 10.5 10.0 0.8 141 chr2L 1792194 exon Gr22b - chr2L 1792264 exon Gr22b - chr2L 1792335 exon Gr22b - chr2L_9_1790001 chr2L_1790001 RAL-502 43 chr2L 1833431 1833442 chr2L 1833505 1833528 4 79 6.0 10.0 8.0 0.4 97 chr2L 1833431 intergenic not near genes chr2L 1833480 intergenic not near genes chr2L 1833528 intergenic not near genes chr2L_4_1830001 chr2L_1830001 RAL-502 44 chr2L 1842308 1842319 chr2L 1842384 1842384 4 83 15.5 14.5 15.0 0.2 76 chr2L 1842308 intron wry + chr2L 1842346 intron wry + chr2L 1842384 intron wry + chr2L_4_1840001 chr2L_1840001 RAL-502 45 chr2L 1849311 1849342 chr2L 1849422 1849447 6 109 12.0 7.5 9.8 0.6 136 chr2L 1849311 intron wry + chr2L 1849379 intron wry + chr2L 1849447 intron wry + chr2L_6_1845001 chr2L_1845001 RAL-502 46 chr2L 1883359 1883389 chr2L 1883505 1883535 7 147 1.5 3.0 2.2 2.2 176 chr2L 1883359 intron CG15358 - chr2L 1883447 intron CG15358 - chr2L 1883535 intron CG15358 - chr2L_7_1880001 chr2L_1880001 RAL-502 47 chr2L 1883397 1883435 chr2L 1883999 1884035 4 601 1.0 12.0 6.5 0.5 638 chr2L 1883397 intron CG15358 - chr2L 1883716 intron CG15358 - chr2L 1884035 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-502 48 chr2L 1905065 1905112 chr2L 1905188 1905223 10 121 6.5 9.5 8.0 1.1 158 chr2L 1905065 intron CG7337 + chr2L 1905144 intron CG7337 + chr2L 1905223 intron CG7337 + chr2L_10_1905001 chr2L_1905001 RAL-502 49 chr2L 1914529 1914531 chr2L 16217660 16217660 5 14303130 22.5 25.0 23.8 0.2 14303131 chr2L 1914529 intron CG7337 + chr2L 9066094 exon CG31708 - chr2L 16217660 intergenic not near genes chr2L_5_9065001 chr2L_9065001 RAL-502 50 chr2L 1925480 1925501 chr2L 1925577 1925596 5 97 11.5 11.0 11.2 0.4 116 chr2L 1925480 intron CG7337 + chr2L 1925538 intron CG7337 + chr2L 1925596 intron CG7337 + chr2L_5_1925001 chr2L_1925001 RAL-502 51 chr2L 1944289 1944323 chr2L 1944386 1944420 4 90 13.0 11.5 12.2 0.3 131 chr2L 1944289 intergenic CG7337 + chr2L 1944354 intergenic not near genes chr2L 1944420 intergenic not near genes chr2L_4_1940001 chr2L_1940001 RAL-502 52 chr2L 1947853 1947898 chr2L 1947966 1948010 9 111 18.5 17.5 18.0 0.5 157 chr2L 1947853 intergenic not near genes chr2L 1947932 intergenic not near genes chr2L 1948010 intergenic not near genes chr2L_9_1945001 chr2L_1945001 RAL-502 53 chr2L 2007855 2007867 chr2L 2007982 2007995 4 128 5.0 9.0 7.0 0.5 140 chr2L 2007855 intergenic CR45712 + chr2L 2007925 intergenic CR45712 +,Nplp4 + chr2L 2007995 intergenic CR45712 +,Nplp4 + chr2L_4_2005001 chr2L_2005001 RAL-502 54 chr2L 2020172 2020189 chr2L 2020369 2020386 4 197 14.0 12.0 13.0 0.3 214 chr2L 2020172 intron CG4238 + chr2L 2020279 intron CG4238 + chr2L 2020386 intron CG4238 + chr2L_4_2020001 chr2L_2020001 RAL-502 55 chr2L 2046312 2046338 chr2L 2046408 2046435 7 96 14.0 15.0 14.5 0.5 123 chr2L 2046312 intron Kebab + chr2L 2046374 intron Kebab + chr2L 2046435 exon Kebab + chr2L_7_2045001 chr2L_2045001 RAL-502 56 chr2L 2049201 2049239 chr2L 2049300 2049343 6 102 5.0 11.0 8.0 0.7 142 chr2L 2049201 intergenic not near genes chr2L 2049272 intergenic not near genes chr2L 2049343 intergenic not near genes chr2L_6_2045001 chr2L_2045001 RAL-502 57 chr2L 2100380 2100405 chr2L 2109544 2109547 roo 6 9152 6.5 9.5 8.0 0.7 9167 chr2L 2100380 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109547 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-502 58 chr2L 2112105 2112142 chr2L 2119773 2119774 opus 10 7664 4.5 5.0 4.8 1.7 7669 chr2L 2112105 intergenic not near genes chr2L 2115940 intergenic not near genes chr2L 2119774 intergenic not near genes chr2L_10_2115001 chr2L_2115001 RAL-502 59 chr2L 2207657 2207695 chr2L 2207758 2207779 4 94 8.5 10.5 9.5 0.4 122 chr2L 2207657 exon CG33124 - chr2L 2207718 exon CG33124 - chr2L 2207779 exon CG33124 - chr2L_4_2205001 chr2L_2205001 RAL-502 60 chr2L 2250398 2250437 chr2L 2251185 2251214 6 781 6.5 9.5 8.0 0.7 816 chr2L 2250398 intergenic Ser12 - chr2L 2250806 exon Ser12 - chr2L 2251214 exon Ser12 - chr2L_6_2250001 chr2L_2250001 RAL-502 61 chr2L 2280151 2280196 chr2L 2280410 2280454 7 258 14.5 12.5 13.5 0.5 303 chr2L 2280151 intergenic CR43753 - chr2L 2280302 intergenic not near genes chr2L 2280454 intergenic not near genes chr2L_7_2280001 chr2L_2280001 RAL-502 62 chr2L 2294042 2294074 chr2L 2299247 2299263 copia 6 5201 0.0 3.0 1.5 2.4 5221 chr2L 2294042 intergenic not near genes chr2L 2296652 intergenic not near genes chr2L 2299263 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-502 63 chr2L 2311057 2311086 chr2L 2311173 2311202 6 115 2.0 3.0 2.5 1.7 145 chr2L 2311057 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311202 intron CG9967 - chr2L_6_2310001 chr2L_2310001 RAL-502 64 chr2L 2317107 2317129 chr2L 2317298 2317319 4 191 21.5 17.0 19.2 0.2 212 chr2L 2317107 intron,intron CG9967 -,eys + chr2L 2317213 intron,intron CG9967 -,eys + chr2L 2317319 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-502 65 chr2L 2317582 2317612 chr2L 2317676 2317709 6 96 27.5 18.5 23.0 0.2 127 chr2L 2317582 intron,intron CG9967 -,eys + chr2L 2317646 intron,intron CG9967 -,eys + chr2L 2317709 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-502 66 chr2L 2330862 2330892 chr2L 2330970 2331001 7 109 13.5 14.5 14.0 0.5 139 chr2L 2330862 intron,intron CG9967 -,eys + chr2L 2330932 intron,intron CG9967 -,eys + chr2L 2331001 intron,intron CG9967 -,eys + chr2L_7_2330001 chr2L_2330001 RAL-502 67 chr2L 2355287 2355303 chr2L 2355407 2355423 5 120 9.5 1.5 5.5 0.8 136 chr2L 2355287 intron,intron CG9967 -,eys + chr2L 2355355 intron,intron CG9967 -,eys + chr2L 2355423 intron,intron CG9967 -,eys + chr2L_5_2355001 chr2L_2355001 RAL-502 68 chr2L 2372346 2372402 chr2L 2372452 2372501 5 105 9.5 10.0 9.8 0.5 155 chr2L 2372346 intergenic CG3609 - chr2L 2372424 intergenic CG3609 - chr2L 2372501 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-502 69 chr2L 2380430 2380456 chr2L 2380511 2380552 7 93 18.0 15.5 16.8 0.4 122 chr2L 2380430 3` UTR Atxn7 + chr2L 2380491 3` UTR Atxn7 + chr2L 2380552 intergenic Atxn7 + chr2L_7_2380001 chr2L_2380001 RAL-502 70 chr2L 2402295 2402341 chr2L 2402426 2402470 10 130 6.0 6.5 6.2 1.4 175 chr2L 2402295 intron VGlut + chr2L 2402382 intron VGlut + chr2L 2402470 intron VGlut + chr2L_10_2400001 chr2L_2400001 RAL-502 71 chr2L 2439255 2439272 chr2L 2439349 2439353 5 92 14.0 7.5 10.8 0.4 98 chr2L 2439255 intron dpp + chr2L 2439304 intron dpp + chr2L 2439353 intron dpp + chr2L_5_2435001 chr2L_2435001 RAL-502 72 chr2L 2503549 2503564 chr2L 2503641 2503680 6 108 12.0 9.5 10.8 0.5 131 chr2L 2503549 intergenic not near genes chr2L 2503614 intergenic not near genes chr2L 2503680 intergenic not near genes chr2L_6_2500001 chr2L_2500001 RAL-502 73 chr2L 2519794 2519836 chr2L 2519893 2519943 5 103 14.0 14.5 14.2 0.3 149 chr2L 2519794 intergenic not near genes chr2L 2519868 intergenic not near genes chr2L 2519943 intergenic not near genes chr2L_5_2515001 chr2L_2515001 RAL-502 74 chr2L 2541434 2541448 chr2L 2541531 2541551 7 102 13.0 8.5 10.8 0.6 117 chr2L 2541434 intergenic not near genes chr2L 2541492 intergenic not near genes chr2L 2541551 intergenic not near genes chr2L_7_2540001 chr2L_2540001 RAL-502 75 chr2L 2547982 2548003 chr2L 2549173 2549191 7 1192 4.5 29.5 17.0 0.4 1209 chr2L 2547982 intergenic not near genes chr2L 2548586 intergenic not near genes chr2L 2549191 intergenic not near genes chr2L_7_2545001 chr2L_2545001 RAL-502 76 chr2L 2552725 2552765 chr2L 2552824 2552865 9 100 12.0 8.5 10.2 0.8 140 chr2L 2552725 exon CG3515 - chr2L 2552795 5` UTR CG3515 - chr2L 2552865 intergenic CG3515 - chr2L_9_2550001 chr2L_2550001 RAL-502 77 chr2L 2557819 2557843 chr2L 2557924 2557948 11 103 0.0 9.0 4.5 2.0 129 chr2L 2557819 intergenic not near genes chr2L 2557884 intergenic not near genes chr2L 2557948 intergenic not near genes chr2L_11_2555001 chr2L_2555001 RAL-502 78 chr2L 2565521 2565556 chr2L 2571609 2571649 297 5 6091 2.5 4.0 3.2 1.2 6128 chr2L 2565521 exon Cyp309a2 - chr2L 2568585 intron Cyp309a2 - chr2L 2571649 exon Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-502 79 chr2L 2587832 2587845 chr2L 2587900 2587944 5 82 8.5 8.0 8.2 0.5 112 chr2L 2587832 intergenic not near genes chr2L 2587888 intergenic not near genes chr2L 2587944 intergenic not near genes chr2L_5_2585001 chr2L_2585001 RAL-502 80 chr2L 2618014 2618070 chr2L 2618113 2618166 7 97 9.5 7.0 8.2 0.8 152 chr2L 2618014 intergenic not near genes chr2L 2618090 intergenic not near genes chr2L 2618166 intergenic not near genes chr2L_7_2615001 chr2L_2615001 RAL-502 81 chr2L 2661179 2661228 chr2L 2663037 2663063 I-element 5 1842 0.5 1.5 1.0 2.5 1884 chr2L 2661179 intergenic not near genes chr2L 2662121 intergenic not near genes chr2L 2663063 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-502 82 chr2L 2667608 2667615 chr2L 2667703 2667713 4 96 10.5 3.5 7.0 0.5 105 chr2L 2667608 intergenic not near genes chr2L 2667660 intergenic not near genes chr2L 2667713 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-502 83 chr2L 2667620 2667658 chr2L 2667702 2667745 13 88 4.0 4.0 4.0 2.6 125 chr2L 2667620 intergenic not near genes chr2L 2667682 intergenic not near genes chr2L 2667745 intergenic not near genes chr2L_13_2665001 chr2L_2665001 RAL-502 84 chr2L 2713511 2713541 chr2L 2713613 2713659 4 104 9.5 6.0 7.8 0.5 148 chr2L 2713511 intron CG31690 + chr2L 2713585 intron CG31690 + chr2L 2713659 intron CG31690 + chr2L_4_2710001 chr2L_2710001 RAL-502 85 chr2L 2772596 2772622 chr2L 2779199 2779226 297 8 6602 8.5 9.0 8.8 0.8 6630 chr2L 2772596 3` UTR Syt1 - chr2L 2775911 intron Syt1 - chr2L 2779226 3` UTR Syt1 - chr2L_8_2775001 chr2L_2775001 RAL-502 86 chr2L 2793925 2793974 chr2L 2794025 2794060 10 97 10.0 10.0 10.0 0.9 135 chr2L 2793925 intron Syt1 - chr2L 2793992 intron Syt1 - chr2L 2794060 intron Syt1 - chr2L_10_2790001 chr2L_2790001 RAL-502 87 chr2L 2828612 2828631 chr2L 2828689 2828722 7 93 10.0 9.5 9.8 0.6 110 chr2L 2828612 intron Duox - chr2L 2828667 intron Duox - chr2L 2828722 intron Duox - chr2L_7_2825001 chr2L_2825001 RAL-502 88 chr2L 2895666 2895699 chr2L 2895772 2895802 6 101 7.0 4.5 5.8 0.9 136 chr2L 2895666 intron lilli + chr2L 2895734 intron lilli + chr2L 2895802 intron lilli + chr2L_6_2895001 chr2L_2895001 RAL-502 89 chr2L 2932469 2932510 chr2L 2932782 2932820 8 314 7.5 10.0 8.8 0.8 351 chr2L 2932469 intron lilli + chr2L 2932644 intron lilli + chr2L 2932820 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-502 90 chr2L 2933285 2933321 chr2L 2935482 2935485 pogo 8 2191 2.5 4.5 3.5 1.8 2200 chr2L 2933285 intron lilli + chr2L 2934385 intron lilli + chr2L 2935485 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-502 91 chr2L 2975642 2975693 chr2L 2978964 2978978 6 3303 35.5 17.5 26.5 0.2 3336 chr2L 2975642 exon CG9641 - chr2L 2977310 exon CG3165 + chr2L 2978978 exon CG9643 - chr2L_6_2975001 chr2L_2975001 RAL-502 92 chr2L 3007717 3007761 chr2L 3008066 3008105 10 345 10.0 13.5 11.8 0.8 388 chr2L 3007717 intron CG17265 + chr2L 3007911 intron CG17265 + chr2L 3008105 intron CG17265 + chr2L_10_3005001 chr2L_3005001 RAL-502 93 chr2L 3073009 3073056 chr2L 3078232 3078275 copia 11 5227 2.0 4.5 3.2 2.6 5266 chr2L 3073009 intron toc - chr2L 3075642 intron toc - chr2L 3078275 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-502 94 chr2L 3108855 3108896 chr2L 3108952 3108993 11 95 1.5 4.0 2.8 2.9 138 chr2L 3108855 exon toc - chr2L 3108924 intron toc - chr2L 3108993 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-502 95 chr2L 3131128 3131175 chr2L 3131230 3131276 7 99 7.5 8.5 8.0 0.8 148 chr2L 3131128 intron toc - chr2L 3131202 intron toc - chr2L 3131276 intron toc - chr2L_7_3130001 chr2L_3130001 RAL-502 96 chr2L 3147260 3147297 chr2L 3147352 3147371 10 86 12.5 10.5 11.5 0.8 111 chr2L 3147260 3` UTR Mad - chr2L 3147316 3` UTR Mad - chr2L 3147371 3` UTR Mad - chr2L_10_3145001 chr2L_3145001 RAL-502 97 chr2L 3171177 3171195 chr2L 3171492 3171519 5 321 15.5 12.0 13.8 0.3 342 chr2L 3171177 intergenic CG44002 - chr2L 3171348 intergenic CG44002 - chr2L 3171519 intergenic CG44002 - chr2L_5_3170001 chr2L_3170001 RAL-502 98 chr2L 3181276 3181301 chr2L 3181382 3181407 4 106 10.0 13.5 11.8 0.3 131 chr2L 3181276 intron CG34393 - chr2L 3181342 intron CG34393 - chr2L 3181407 intron CG34393 - chr2L_4_3180001 chr2L_3180001 RAL-502 99 chr2L 3192208 3192233 chr2L 3192324 3192338 8 124 5.0 9.5 7.2 1.0 130 chr2L 3192208 exon CG34393 - chr2L 3192273 intron CG34393 - chr2L 3192338 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-502 100 chr2L 3202724 3202737 chr2L 3210173 3210186 mdg1 6 7449 7.0 0.5 3.8 1.2 7462 chr2L 3202724 intergenic not near genes chr2L 3206455 intergenic not near genes chr2L 3210186 intergenic CR45336 + chr2L_6_3205001 chr2L_3205001 RAL-502 101 chr2L 3202741 3202772 chr2L 3210170 3210221 mdg1 9 7444 2.0 0.5 1.2 4.1 7480 chr2L 3202741 intergenic not near genes chr2L 3206481 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_9_3205001 chr2L_3205001 RAL-502 102 chr2L 3233617 3233636 chr2L 3233787 3233805 5 170 18.0 18.5 18.2 0.3 188 chr2L 3233617 intergenic not near genes chr2L 3233711 intergenic not near genes chr2L 3233805 intergenic not near genes chr2L_5_3230001 chr2L_3230001 RAL-502 103 chr2L 3251474 3251519 chr2L 3259059 3259103 springer 11 7582 4.5 7.0 5.8 1.6 7629 chr2L 3251474 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259103 intergenic not near genes chr2L_11_3255001 chr2L_3255001 RAL-502 104 chr2L 3271133 3271154 chr2L 3271274 3271294 10 138 17.0 15.5 16.2 0.6 161 chr2L 3271133 exon CG3347 + chr2L 3271214 exon CG3347 + chr2L 3271294 exon CG3347 + chr2L_10_3270001 chr2L_3270001 RAL-502 105 chr2L 3271160 3271181 chr2L 3271272 3271299 7 130 15.5 15.5 15.5 0.4 139 chr2L 3271160 exon CG3347 + chr2L 3271230 exon CG3347 + chr2L 3271299 exon CG3347 + chr2L_7_3270001 chr2L_3270001 RAL-502 106 chr2L 3284354 3284391 chr2L 3284453 3284491 10 99 13.0 12.0 12.5 0.7 137 chr2L 3284354 intergenic not near genes chr2L 3284422 intergenic not near genes chr2L 3284491 intergenic not near genes chr2L_10_3280001 chr2L_3280001 RAL-502 107 chr2L 3291255 3291269 chr2L 3291330 3291369 7 88 1.5 4.5 3.0 1.8 114 chr2L 3291255 3` UTR CG9664 - chr2L 3291312 3` UTR CG9664 - chr2L 3291369 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-502 108 chr2L 3323257 3323278 chr2L 3323363 3323405 8 119 14.5 20.0 17.2 0.4 148 chr2L 3323257 intergenic CG8837 + chr2L 3323331 intergenic CG8837 + chr2L 3323405 intergenic CG8837 + chr2L_8_3320001 chr2L_3320001 RAL-502 109 chr2L 3356658 3356710 chr2L 3356777 3356827 6 118 3.5 6.5 5.0 1.0 169 chr2L 3356658 intergenic not near genes chr2L 3356742 intergenic not near genes chr2L 3356827 intergenic not near genes chr2L_6_3355001 chr2L_3355001 RAL-502 110 chr2L 3379747 3379771 chr2L 3379862 3379888 4 116 7.0 6.5 6.8 0.5 141 chr2L 3379747 intergenic not near genes chr2L 3379818 intergenic not near genes chr2L 3379888 intergenic not near genes chr2L_4_3375001 chr2L_3375001 RAL-502 111 chr2L 3388591 3388630 chr2L 3388852 3388891 pogo 7 260 3.5 3.0 3.2 1.7 300 chr2L 3388591 intergenic CG42460 - chr2L 3388741 intergenic CG42460 - chr2L 3388891 intergenic CG42460 -,CR44791 + chr2L_7_3385001 chr2L_3385001 RAL-502 112 chr2L 3393510 3393798 chr2L 3393608 3393879 8 97 8.0 8.0 8.0 0.9 369 chr2L 3393510 intergenic not near genes chr2L 3393694 intergenic not near genes chr2L 3393879 intergenic not near genes chr2L_8_3390001 chr2L_3390001 RAL-502 113 chr2L 3398572 3398614 chr2L 3398673 3398715 5 100 10.0 13.0 11.5 0.4 143 chr2L 3398572 3` UTR CG34175 + chr2L 3398644 3` UTR CG34175 + chr2L 3398715 intergenic CG34175 + chr2L_5_3395001 chr2L_3395001 RAL-502 114 chr2L 3498707 3498748 chr2L 3498804 3498845 4 90 4.0 3.0 3.5 0.9 138 chr2L 3498707 intron tim - chr2L 3498776 intron tim - chr2L 3498845 intron tim - chr2L_4_3495001 chr2L_3495001 RAL-502 115 chr2L 3508349 3508369 chr2L 3508447 3508467 9 98 2.5 3.5 3.0 2.2 118 chr2L 3508349 intergenic tim -,CR45299 + chr2L 3508408 intergenic CR45299 +,tim - chr2L 3508467 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-502 116 chr2L 3582882 3582906 chr2L 3582979 3583000 5 96 3.0 7.0 5.0 0.8 118 chr2L 3582882 intergenic not near genes chr2L 3582941 intergenic not near genes chr2L 3583000 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-502 117 chr2L 3649772 3649782 chr2L 3654995 3655004 copia 5 5222 7.5 6.0 6.8 0.6 5232 chr2L 3649772 intron for - chr2L 3652388 intron for - chr2L 3655004 intron for - chr2L_5_3650001 chr2L_3650001 RAL-502 118 chr2L 3649786 3649814 chr2L 3654990 3655037 copia 12 5216 4.5 5.0 4.8 2.1 5251 chr2L 3649786 intron for - chr2L 3652412 intron for - chr2L 3655037 intron for - chr2L_12_3650001 chr2L_3650001 RAL-502 119 chr2L 3663308 3663325 chr2L 3663407 3663423 4 98 11.0 13.0 12.0 0.3 115 chr2L 3663308 intron CG34340 + chr2L 3663366 intron CG34340 + chr2L 3663423 intron CG34340 + chr2L_4_3660001 chr2L_3660001 RAL-502 120 chr2L 3667950 3668059 chr2L 3668050 3668154 5 99 4.5 2.0 3.2 1.2 204 chr2L 3667950 intron CG34340 + chr2L 3668052 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668154 intron,exon CG34340 +,Sfp24Ba - chr2L_5_3665001 chr2L_3665001 RAL-502 121 chr2L 3670713 3670745 chr2L 3670815 3670840 6 99 6.0 6.5 6.2 0.8 127 chr2L 3670713 intron CG34340 + chr2L 3670776 intron CG34340 + chr2L 3670840 intron CG34340 + chr2L_6_3670001 chr2L_3670001 RAL-502 122 chr2L 3707550 3707582 chr2L 3707652 3707687 5 103 10.5 7.5 9.0 0.5 137 chr2L 3707550 exon cutlet - chr2L 3707618 intron cutlet - chr2L 3707687 intron cutlet - chr2L_5_3705001 chr2L_3705001 RAL-502 123 chr2L 3785460 3785479 chr2L 3785555 3785575 4 95 28.0 20.5 24.2 0.2 115 chr2L 3785460 exon CG31960 + chr2L 3785518 3` UTR CG31960 + chr2L 3785575 3` UTR CG31960 + chr2L_4_3785001 chr2L_3785001 RAL-502 124 chr2L 3785491 3785508 chr2L 3786307 3786325 6 816 22.0 14.5 18.2 0.3 834 chr2L 3785491 3` UTR CG31960 + chr2L 3785908 exon CG31958 + chr2L 3786325 3` UTR CG31958 + chr2L_6_3785001 chr2L_3785001 RAL-502 125 chr2L 3788390 3788408 chr2L 3788506 3788523 5 116 3.0 4.5 3.8 1.0 133 chr2L 3788390 intron CG3921 + chr2L 3788456 intron CG3921 + chr2L 3788523 intron CG3921 + chr2L_5_3785001 chr2L_3785001 RAL-502 126 chr2L 3819011 3819054 chr2L 3819112 3819156 5 93 16.0 13.0 14.5 0.3 145 chr2L 3819011 intergenic CR44077 + chr2L 3819084 intergenic not near genes chr2L 3819156 intergenic not near genes chr2L_5_3815001 chr2L_3815001 RAL-502 127 chr2L 3819605 3819628 chr2L 3819701 3819724 8 94 13.0 12.5 12.8 0.6 119 chr2L 3819605 intergenic not near genes chr2L 3819664 intergenic not near genes chr2L 3819724 intergenic not near genes chr2L_8_3815001 chr2L_3815001 RAL-502 128 chr2L 3898254 3898308 chr2L 3898356 3898406 8 100 1.0 7.0 4.0 1.6 152 chr2L 3898254 intron capu - chr2L 3898330 intron capu - chr2L 3898406 intron capu - chr2L_8_3895001 chr2L_3895001 RAL-502 129 chr2L 3944946 3944967 chr2L 3945073 3945094 5 125 10.5 7.0 8.8 0.5 148 chr2L 3944946 intron fred - chr2L 3945020 intron fred - chr2L 3945094 intron fred - chr2L_5_3945001 chr2L_3945001 RAL-502 130 chr2L 3944968 3944987 chr2L 3945072 3945113 6 121 8.5 7.5 8.0 0.7 145 chr2L 3944968 intron fred - chr2L 3945040 intron fred - chr2L 3945113 intron fred - chr2L_6_3945001 chr2L_3945001 RAL-502 131 chr2L 3985964 3985979 chr2L 3986062 3986077 4 98 8.5 8.0 8.2 0.4 113 chr2L 3985964 intron fred - chr2L 3986020 intron fred - chr2L 3986077 intron fred - chr2L_4_3985001 chr2L_3985001 RAL-502 132 chr2L 3999175 3999204 chr2L 3999268 3999300 8 98 5.5 8.0 6.8 1.0 125 chr2L 3999175 intergenic not near genes chr2L 3999238 intergenic not near genes chr2L 3999300 intergenic not near genes chr2L_8_3995001 chr2L_3995001 RAL-502 133 chr2L 4001648 4001687 chr2L 4001765 4001803 6 117 4.5 9.0 6.8 0.8 155 chr2L 4001648 intergenic CR45344 + chr2L 4001726 intergenic CR45344 + chr2L 4001803 intergenic CR45344 + chr2L_6_4000001 chr2L_4000001 RAL-502 134 chr2L 4020012 4020018 chr2L 4020107 4020114 5 96 10.5 10.5 10.5 0.4 102 chr2L 4020012 intergenic not near genes chr2L 4020063 intergenic not near genes chr2L 4020114 intergenic not near genes chr2L_5_4020001 chr2L_4020001 RAL-502 135 chr2L 4037783 4037802 chr2L 4037890 4037909 4 106 5.5 2.0 3.8 0.8 126 chr2L 4037783 intron ed + chr2L 4037846 intron ed + chr2L 4037909 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-502 136 chr2L 4048885 4048902 chr2L 4048995 4049012 5 110 3.5 4.5 4.0 1.0 127 chr2L 4048885 intron ed + chr2L 4048948 intron ed + chr2L 4049012 intron ed + chr2L_5_4045001 chr2L_4045001 RAL-502 137 chr2L 4048904 4048918 chr2L 4048979 4049017 4 96 2.0 2.5 2.2 1.2 113 chr2L 4048904 intron ed + chr2L 4048960 intron ed + chr2L 4049017 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-502 138 chr2L 4054527 4054575 chr2L 4054636 4054683 10 106 3.0 2.0 2.5 2.9 156 chr2L 4054527 intron ed + chr2L 4054605 intron ed + chr2L 4054683 intron ed + chr2L_10_4050001 chr2L_4050001 RAL-502 139 chr2L 4060164 4060191 chr2L 4060252 4060287 7 95 14.0 16.0 15.0 0.4 123 chr2L 4060164 intron ed + chr2L 4060226 intron ed + chr2L 4060287 intron ed + chr2L_7_4060001 chr2L_4060001 RAL-502 140 chr2L 4066042 4066057 chr2L 4068871 4068902 Juan 5 2842 5.0 8.5 6.8 0.6 2860 chr2L 4066042 intron ed + chr2L 4067472 intron ed + chr2L 4068902 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-502 141 chr2L 4160497 4160534 chr2L 4160922 4160965 10 424 13.5 10.0 11.8 0.8 468 chr2L 4160497 intergenic not near genes chr2L 4160731 intergenic not near genes chr2L 4160965 intergenic not near genes chr2L_10_4160001 chr2L_4160001 RAL-502 142 chr2L 4166360 4166400 chr2L 4166459 4166502 11 102 10.5 11.5 11.0 0.9 142 chr2L 4166360 intergenic Or24a - chr2L 4166431 intergenic Or24a - chr2L 4166502 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-502 143 chr2L 4170508 4170523 chr2L 4170850 4170865 4 343 8.5 19.0 13.8 0.3 357 chr2L 4170508 intergenic not near genes chr2L 4170686 intergenic not near genes chr2L 4170865 intergenic not near genes chr2L_4_4170001 chr2L_4170001 RAL-502 144 chr2L 4181296 4181304 chr2L 4183943 4183945 Burdock 6 2649 5.5 15.0 10.2 0.5 2649 chr2L 4181296 intergenic not near genes chr2L 4182620 intergenic not near genes chr2L 4183945 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-502 145 chr2L 4184459 4184507 chr2L 4184795 4184846 4 337 3.0 3.0 3.0 1.0 387 chr2L 4184459 intergenic not near genes chr2L 4184652 intergenic not near genes chr2L 4184846 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-502 146 chr2L 4265474 4265495 chr2L 4265580 4265601 4 106 6.5 4.0 5.2 0.6 127 chr2L 4265474 intergenic not near genes chr2L 4265538 intergenic not near genes chr2L 4265601 intergenic not near genes chr2L_4_4265001 chr2L_4265001 RAL-502 147 chr2L 4293922 4293946 chr2L 4294003 4294041 4 95 9.0 8.5 8.8 0.4 119 chr2L 4293922 intron tutl + chr2L 4293982 intron tutl + chr2L 4294041 intron tutl + chr2L_4_4290001 chr2L_4290001 RAL-502 148 chr2L 4300245 4300271 chr2L 4300341 4300350 4 92 15.5 8.0 11.8 0.3 105 chr2L 4300245 intron tutl + chr2L 4300298 intron tutl + chr2L 4300350 intron tutl + chr2L_4_4300001 chr2L_4300001 RAL-502 149 chr2L 4317882 4317904 chr2L 4317970 4318002 6 94 6.5 6.0 6.2 0.8 120 chr2L 4317882 intron tutl + chr2L 4317942 intron tutl + chr2L 4318002 intron tutl + chr2L_6_4315001 chr2L_4315001 RAL-502 150 chr2L 4351479 4351497 chr2L 4351562 4351593 7 94 14.0 13.5 13.8 0.5 114 chr2L 4351479 intergenic CR44700 + chr2L 4351536 intergenic CR44700 + chr2L 4351593 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-502 151 chr2L 4360016 4360026 chr2L 4360194 4360204 4 178 21.5 12.5 17.0 0.2 188 chr2L 4360016 intergenic not near genes chr2L 4360110 intergenic not near genes chr2L 4360204 intergenic not near genes chr2L_4_4360001 chr2L_4360001 RAL-502 152 chr2L 4371140 4371159 chr2L 4371247 4371257 4 103 8.5 1.0 4.8 0.7 117 chr2L 4371140 intron Traf4 + chr2L 4371198 intron Traf4 + chr2L 4371257 intron Traf4 + chr2L_4_4370001 chr2L_4370001 RAL-502 153 chr2L 4470839 4470883 chr2L 4470936 4470978 8 95 10.0 10.5 10.2 0.7 139 chr2L 4470839 intron ine - chr2L 4470908 intron ine - chr2L 4470978 intron ine - chr2L_8_4470001 chr2L_4470001 RAL-502 154 chr2L 4534493 4534502 chr2L 4536727 4536737 9 2234 39.5 79.5 59.5 0.1 2244 chr2L 4534493 exon dp - chr2L 4535615 exon dp - chr2L 4536737 exon dp - chr2L_9_4535001 chr2L_4535001 RAL-502 155 chr2L 4586957 4586997 chr2L 4587064 4587098 7 107 11.5 16.5 14.0 0.5 141 chr2L 4586957 intron dp - chr2L 4587028 intron dp - chr2L 4587098 intron dp - chr2L_7_4585001 chr2L_4585001 RAL-502 156 chr2L 4601690 4601736 chr2L 4609143 4609196 mdg1 22 7458 7.0 9.0 8.0 2.4 7506 chr2L 4601690 intron dp - chr2L 4605443 intron dp - chr2L 4609196 intron dp - chr2L_22_4605001 chr2L_4605001 RAL-502 157 chr2L 4672076 4672109 chr2L 4672173 4672206 6 97 12.0 12.5 12.2 0.5 130 chr2L 4672076 intergenic not near genes chr2L 4672141 intergenic not near genes chr2L 4672206 intergenic not near genes chr2L_6_4670001 chr2L_4670001 RAL-502 158 chr2L 4681273 4681322 chr2L 4681557 4681599 6 275 10.0 12.0 11.0 0.5 326 chr2L 4681273 intergenic not near genes chr2L 4681436 intergenic not near genes chr2L 4681599 intergenic not near genes chr2L_6_4680001 chr2L_4680001 RAL-502 159 chr2L 4748679 4748709 chr2L 4748775 4748808 4 94 11.0 12.5 11.8 0.3 129 chr2L 4748679 intron CG15630 - chr2L 4748744 intron CG15630 - chr2L 4748808 intron CG15630 - chr2L_4_4745001 chr2L_4745001 RAL-502 160 chr2L 4803874 4803913 chr2L 4803978 4804017 12 104 9.0 9.5 9.2 1.2 143 chr2L 4803874 intergenic not near genes chr2L 4803946 intergenic not near genes chr2L 4804017 intergenic not near genes chr2L_12_4800001 chr2L_4800001 RAL-502 161 chr2L 4819503 4819519 chr2L 4819636 4819662 11 138 2.5 6.5 4.5 2.0 159 chr2L 4819503 intergenic not near genes chr2L 4819582 intergenic not near genes chr2L 4819662 intergenic not near genes chr2L_11_4815001 chr2L_4815001 RAL-502 162 chr2L 4841053 4841102 chr2L 4841149 4841198 10 92 11.0 17.0 14.0 0.7 145 chr2L 4841053 intron CG12194 + chr2L 4841126 intron CG12194 + chr2L 4841198 3` UTR CG12194 + chr2L_10_4840001 chr2L_4840001 RAL-502 163 chr2L 4858449 4858484 chr2L 4858557 4858592 16 113 2.5 4.0 3.2 3.8 143 chr2L 4858449 intron pog + chr2L 4858520 intron pog + chr2L 4858592 intron pog + chr2L_16_4855001 chr2L_4855001 RAL-502 164 chr2L 4869935 4869968 chr2L 4870041 4870074 8 105 10.0 13.5 11.8 0.6 139 chr2L 4869935 intron pog + chr2L 4870004 intron pog + chr2L 4870074 intron pog + chr2L_8_4870001 chr2L_4870001 RAL-502 165 chr2L 4886859 4886892 chr2L 4886972 4886981 4 107 12.5 8.5 10.5 0.3 122 chr2L 4886859 intergenic not near genes chr2L 4886920 intergenic not near genes chr2L 4886981 intergenic not near genes chr2L_4_4885001 chr2L_4885001 RAL-502 166 chr2L 4918161 4918195 chr2L 4923254 4923326 jockey 5 5101 0.5 0.5 0.5 3.3 5165 chr2L 4918161 intron hoe1 - chr2L 4920744 intron hoe1 - chr2L 4923326 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-502 167 chr2L 4967782 4967825 chr2L 4967891 4967917 7 105 9.5 8.0 8.8 0.7 135 chr2L 4967782 intergenic Trip1 -,Scox - chr2L 4967850 3` UTR Scox - chr2L 4967917 3` UTR Scox - chr2L_7_4965001 chr2L_4965001 RAL-502 168 chr2L 4996078 4996117 chr2L 4996175 4996214 8 96 3.5 6.0 4.8 1.4 136 chr2L 4996078 intron Rtnl1 - chr2L 4996146 intron Rtnl1 - chr2L 4996214 intron Rtnl1 - chr2L_8_4995001 chr2L_4995001 RAL-502 169 chr2L 5060357 5060389 chr2L 5060456 5060486 4 99 14.5 11.5 13.0 0.3 129 chr2L 5060357 intergenic CR45291 -,qtc + chr2L 5060422 intergenic CR45291 -,qtc + chr2L 5060486 3` UTR CR45291 - chr2L_4_5060001 chr2L_5060001 RAL-502 170 chr2L 5117280 5117322 chr2L 5117382 5117388 7 90 12.0 9.5 10.8 0.6 108 chr2L 5117280 intron Msp300 + chr2L 5117334 intron Msp300 + chr2L 5117388 intron Msp300 + chr2L_7_5115001 chr2L_5115001 RAL-502 171 chr2L 5120953 5121006 chr2L 5121067 5121120 7 109 17.0 16.0 16.5 0.4 167 chr2L 5120953 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121120 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-502 172 chr2L 5206447 5206487 chr2L 5210240 5210293 9 3800 32.5 34.5 33.5 0.3 3846 chr2L 5206447 3` UTR Msp300 + chr2L 5208370 exon Cyp28d2 + chr2L 5210293 intergenic Cyp28d1 + chr2L_9_5205001 chr2L_5205001 RAL-502 173 chr2L 5237908 5237939 chr2L 5238013 5238017 6 102 14.0 13.5 13.8 0.4 109 chr2L 5237908 intron tkv - chr2L 5237962 intron tkv - chr2L 5238017 intron tkv - chr2L_6_5235001 chr2L_5235001 RAL-502 174 chr2L 5276706 5276714 chr2L 5276810 5276818 4 104 3.5 6.5 5.0 0.7 112 chr2L 5276706 exon Bsg25D - chr2L 5276762 intron Bsg25D - chr2L 5276818 intron Bsg25D - chr2L_4_5275001 chr2L_5275001 RAL-502 175 chr2L 5342754 5342800 chr2L 5345152 5345165 Doc 7 2387 0.0 2.5 1.2 3.2 2411 chr2L 5342754 intergenic not near genes chr2L 5343960 intergenic not near genes chr2L 5345165 intergenic not near genes chr2L_7_5340001 chr2L_5340001 RAL-502 176 chr2L 5345428 5345451 chr2L 5345520 5345524 6 85 12.0 12.5 12.2 0.5 96 chr2L 5345428 intergenic not near genes chr2L 5345476 intergenic not near genes chr2L 5345524 intergenic not near genes chr2L_6_5345001 chr2L_5345001 RAL-502 177 chr2L 5378426 5378450 chr2L 5378525 5378549 4 97 11.0 9.5 10.2 0.4 123 chr2L 5378426 intergenic not near genes chr2L 5378488 intergenic not near genes chr2L 5378549 intergenic not near genes chr2L_4_5375001 chr2L_5375001 RAL-502 178 chr2L 5487803 5487852 chr2L 5490708 5490755 5 2903 17.5 16.5 17.0 0.3 2952 chr2L 5487803 intergenic not near genes chr2L 5489279 intergenic not near genes chr2L 5490755 intergenic not near genes chr2L_5_5485001 chr2L_5485001 RAL-502 179 chr2L 5487997 5488034 chr2L 5488096 5488134 8 100 4.0 2.5 3.2 1.9 137 chr2L 5487997 intergenic not near genes chr2L 5488066 intergenic not near genes chr2L 5488134 intergenic not near genes chr2L_8_5485001 chr2L_5485001 RAL-502 180 chr2L 5487529 5487550 chr2L 5491614 5491643 6 4090 26.0 27.5 26.8 0.2 4114 chr2L 5487529 intergenic CR45287 + chr2L 5489586 intergenic not near genes chr2L 5491643 intergenic not near genes chr2L_6_5485001 chr2L_5485001 RAL-502 181 chr2L 5500041 5500064 chr2L 5500147 5500170 5 106 10.5 7.0 8.8 0.5 129 chr2L 5500041 intergenic not near genes chr2L 5500106 intergenic not near genes chr2L 5500170 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-502 182 chr2L 5508523 5508563 chr2L 5508614 5508658 5 95 1.5 3.0 2.2 1.6 135 chr2L 5508523 intergenic not near genes chr2L 5508590 intergenic not near genes chr2L 5508658 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-502 183 chr2L 5695854 5695883 chr2L 5695953 5695995 11 109 3.0 4.0 3.5 2.4 141 chr2L 5695854 intergenic not near genes chr2L 5695924 intergenic not near genes chr2L 5695995 intergenic not near genes chr2L_11_5695001 chr2L_5695001 RAL-502 184 chr2L 5774570 5774609 chr2L 5774802 5774820 4 225 9.0 7.5 8.2 0.4 250 chr2L 5774570 intron CG9171 - chr2L 5774695 intron CG9171 - chr2L 5774820 intron CG9171 - chr2L_4_5770001 chr2L_5770001 RAL-502 185 chr2L 5784944 5784980 chr2L 5785047 5785077 4 102 10.0 11.0 10.5 0.3 133 chr2L 5784944 intron CG9171 - chr2L 5785010 intron CG9171 - chr2L 5785077 intron CG9171 - chr2L_4_5785001 chr2L_5785001 RAL-502 186 chr2L 5813655 5813679 chr2L 5813780 5813804 4 125 9.5 10.5 10.0 0.4 149 chr2L 5813655 intergenic not near genes chr2L 5813730 intergenic not near genes chr2L 5813804 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-502 187 chr2L 5825075 5825091 chr2L 5825188 5825204 4 114 5.0 3.5 4.2 0.8 129 chr2L 5825075 5` UTR TrissinR + chr2L 5825140 5` UTR TrissinR + chr2L 5825204 5` UTR TrissinR + chr2L_4_5825001 chr2L_5825001 RAL-502 188 chr2L 5827410 5827453 chr2L 5827523 5827571 16 115 6.5 13.5 10.0 1.5 161 chr2L 5827410 intron TrissinR + chr2L 5827490 intron TrissinR + chr2L 5827571 intron TrissinR + chr2L_16_5825001 chr2L_5825001 RAL-502 189 chr2L 5827702 5827716 chr2L 5836727 5836744 roo 7 9027 9.0 8.0 8.5 0.7 9042 chr2L 5827702 intron TrissinR + chr2L 5832223 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-502 190 chr2L 5827717 5827741 chr2L 5836722 5836755 roo 9 9018 7.0 7.0 7.0 1.1 9038 chr2L 5827717 intron TrissinR + chr2L 5832236 intron TrissinR + chr2L 5836755 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-502 191 chr2L 5897576 5897625 chr2L 5897677 5897724 31 93 8.5 3.5 6.0 4.4 148 chr2L 5897576 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897724 intergenic not near genes chr2L_31_5895001 chr2L_5895001 RAL-502 192 chr2L 5976931 5977002 chr2L 5977037 5977114 14 111 3.5 1.5 2.5 4.0 183 chr2L 5976931 intron chic - chr2L 5977022 intron chic - chr2L 5977114 intron chic - chr2L_14_5975001 chr2L_5975001 RAL-502 193 chr2L 5989021 5989062 chr2L 5989117 5989135 10 91 13.5 8.0 10.8 0.8 114 chr2L 5989021 intergenic ifc +,lid - chr2L 5989078 intergenic ifc +,lid - chr2L 5989135 intergenic lid -,ifc + chr2L_10_5985001 chr2L_5985001 RAL-502 194 chr2L 6007098 6007112 chr2L 6007187 6007208 5 94 6.5 4.0 5.2 0.8 110 chr2L 6007098 intergenic CG9098 -,Gal - chr2L 6007153 intergenic CG9098 -,Gal - chr2L 6007208 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-502 195 chr2L 6070896 6070925 chr2L 6070993 6071019 8 100 1.5 6.5 4.0 1.6 123 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070958 intergenic Kr-h2 +,CG9154 - chr2L 6071019 5` UTR Kr-h2 + chr2L_8_6070001 chr2L_6070001 RAL-502 196 chr2L 6085447 6085495 chr2L 6085733 6085781 7 284 14.0 12.5 13.2 0.5 334 chr2L 6085447 intron Kr-h1 + chr2L 6085614 intron Kr-h1 + chr2L 6085781 intron Kr-h1 + chr2L_7_6085001 chr2L_6085001 RAL-502 197 chr2L 6106228 6106236 chr2L 6106331 6106339 5 103 10.0 15.0 12.5 0.4 111 chr2L 6106228 intron stai + chr2L 6106284 intron stai + chr2L 6106339 intron stai + chr2L_5_6105001 chr2L_6105001 RAL-502 198 chr2L 6138364 6138399 chr2L 6138613 6138646 8 250 9.0 10.5 9.8 0.7 282 chr2L 6138364 intergenic not near genes chr2L 6138505 intergenic CR44824 - chr2L 6138646 intergenic CR44824 - chr2L_8_6135001 chr2L_6135001 RAL-502 199 chr2L 6173848 6173879 chr2L 6173944 6173971 5 95 6.0 4.5 5.2 0.8 123 chr2L 6173848 intergenic not near genes chr2L 6173910 intergenic not near genes chr2L 6173971 intergenic not near genes chr2L_5_6170001 chr2L_6170001 RAL-502 200 chr2L 6253599 6253635 chr2L 6253695 6253731 9 95 7.0 4.0 5.5 1.4 132 chr2L 6253599 intron Ddr + chr2L 6253665 intron Ddr + chr2L 6253731 intron Ddr + chr2L_9_6250001 chr2L_6250001 RAL-502 201 chr2L 6363134 6363176 chr2L 6366079 6366111 Burdock 9 2942 5.0 2.5 3.8 1.9 2977 chr2L 6363134 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366111 intergenic not near genes chr2L_9_6360001 chr2L_6360001 RAL-502 202 chr2L 6380233 6380281 chr2L 6380340 6380357 5 101 9.5 6.5 8.0 0.6 124 chr2L 6380233 intron CG42368 - chr2L 6380295 intron CG42368 - chr2L 6380357 intron CG42368 - chr2L_5_6380001 chr2L_6380001 RAL-502 203 chr2L 6414727 6414757 chr2L 6414827 6414857 6 100 1.0 0.5 0.8 3.3 130 chr2L 6414727 3` UTR CG13982 + chr2L 6414792 3` UTR CG13982 + chr2L 6414857 3` UTR CG13982 + chr2L_6_6410001 chr2L_6410001 RAL-502 204 chr2L 6426838 6426885 chr2L 6445118 6445163 roo 13 18277 6.0 7.5 6.8 1.7 18325 chr2L 6426838 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445163 exon CG9527 - chr2L_13_6435001 chr2L_6435001 RAL-502 205 chr2L 6454296 6454342 chr2L 6454621 6454665 13 322 15.5 13.0 14.2 0.9 369 chr2L 6454296 intron retm - chr2L 6454480 intron retm - chr2L 6454665 intron retm - chr2L_13_6450001 chr2L_6450001 RAL-502 206 chr2L 6462235 6462285 chr2L 6462333 6462371 12 94 16.0 17.0 16.5 0.7 136 chr2L 6462235 intron CG16947 - chr2L 6462303 intron CG16947 - chr2L 6462371 intron CG16947 - chr2L_12_6460001 chr2L_6460001 RAL-502 207 chr2L 6504965 6504983 chr2L 6505074 6505088 5 108 12.5 13.0 12.8 0.4 123 chr2L 6504965 intron CG31637 + chr2L 6505026 intron CG31637 + chr2L 6505088 intron CG31637 + chr2L_5_6505001 chr2L_6505001 RAL-502 208 chr2L 6514414 6514422 chr2L 6514528 6514536 5 114 12.5 14.5 13.5 0.3 122 chr2L 6514414 intron CG31637 + chr2L 6514475 intron CG31637 + chr2L 6514536 intron CG31637 + chr2L_5_6510001 chr2L_6510001 RAL-502 209 chr2L 6544358 6544390 chr2L 6544470 6544502 5 112 2.0 3.0 2.5 1.4 144 chr2L 6544358 intron eya - chr2L 6544430 intron eya - chr2L 6544502 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-502 210 chr2L 6590080 6590124 chr2L 6590175 6590222 6 95 9.5 14.0 11.8 0.5 142 chr2L 6590080 intron CG11319 - chr2L 6590151 intron CG11319 - chr2L 6590222 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-502 211 chr2L 6598099 6598138 chr2L 6599076 6599113 6 976 9.5 8.0 8.8 0.6 1014 chr2L 6598099 intron CG11319 - chr2L 6598606 intron CG11319 - chr2L 6599113 intron CG11319 - chr2L_6_6595001 chr2L_6595001 RAL-502 212 chr2L 6640896 6640931 chr2L 6641005 6641046 6 112 14.5 15.0 14.8 0.4 150 chr2L 6640896 exon CG31635 - chr2L 6640971 intron CG31635 - chr2L 6641046 intron CG31635 - chr2L_6_6640001 chr2L_6640001 RAL-502 213 chr2L 6655506 6655537 chr2L 6655887 6655891 6 372 5.0 2.5 3.8 1.2 385 chr2L 6655506 exon CG31633 - chr2L 6655698 exon CG31633 - chr2L 6655891 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-502 214 chr2L 6839712 6839757 chr2L 6839825 6839870 8 112 7.5 11.5 9.5 0.8 158 chr2L 6839712 intergenic not near genes chr2L 6839791 intergenic not near genes chr2L 6839870 intergenic not near genes chr2L_8_6835001 chr2L_6835001 RAL-502 215 chr2L 6850358 6850415 chr2L 6850461 6850527 12 113 3.0 2.5 2.8 3.2 169 chr2L 6850358 intergenic not near genes chr2L 6850442 intergenic not near genes chr2L 6850527 intergenic not near genes chr2L_12_6850001 chr2L_6850001 RAL-502 216 chr2L 6876772 6876807 chr2L 6882965 6883006 diver 5 6195 8.5 6.0 7.2 0.6 6234 chr2L 6876772 intron Nlg2 + chr2L 6879889 intron Nlg2 + chr2L 6883006 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-502 217 chr2L 6883726 6883755 chr2L 6883832 6883861 7 105 19.0 17.0 18.0 0.4 135 chr2L 6883726 intron Nlg2 + chr2L 6883794 intron Nlg2 + chr2L 6883861 intron Nlg2 + chr2L_7_6880001 chr2L_6880001 RAL-502 218 chr2L 6883759 6883774 chr2L 6883830 6883879 4 93 18.5 18.0 18.2 0.2 120 chr2L 6883759 intron Nlg2 + chr2L 6883819 intron Nlg2 + chr2L 6883879 intron Nlg2 + chr2L_4_6880001 chr2L_6880001 RAL-502 219 chr2L 6887482 6887528 chr2L 6887652 6887700 5 170 1.5 0.0 0.8 2.8 218 chr2L 6887482 intron Nlg2 + chr2L 6887591 intron Nlg2 + chr2L 6887700 intron Nlg2 + chr2L_5_6885001 chr2L_6885001 RAL-502 220 chr2L 7043494 7043530 chr2L 7043598 7043629 4 103 4.0 4.5 4.2 0.8 135 chr2L 7043494 intron milt + chr2L 7043562 intron milt + chr2L 7043629 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-502 221 chr2L 7089891 7089904 chr2L 7089990 7090035 5 113 6.5 6.5 6.5 0.7 144 chr2L 7089891 intergenic not near genes chr2L 7089963 intergenic not near genes chr2L 7090035 intergenic not near genes chr2L_5_7085001 chr2L_7085001 RAL-502 222 chr2L 7107573 7107606 chr2L 7107682 7107696 9 105 0.5 10.5 5.5 1.4 123 chr2L 7107573 intron Pvf3 - chr2L 7107634 intron Pvf3 - chr2L 7107696 intron Pvf3 - chr2L_9_7105001 chr2L_7105001 RAL-502 223 chr2L 7111737 7111775 chr2L 7111843 7111855 5 100 1.0 0.0 0.5 3.3 118 chr2L 7111737 intron Pvf3 - chr2L 7111796 intron Pvf3 - chr2L 7111855 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-502 224 chr2L 7140647 7140685 chr2L 7140751 7140770 4 99 8.5 13.0 10.8 0.3 123 chr2L 7140647 intron Pvf3 - chr2L 7140708 intron Pvf3 - chr2L 7140770 intron Pvf3 - chr2L_4_7140001 chr2L_7140001 RAL-502 225 chr2L 7151824 7151846 chr2L 7152139 7152161 8 314 6.5 11.5 9.0 0.8 337 chr2L 7151824 intron Pvf3 - chr2L 7151992 intron Pvf3 - chr2L 7152161 intron Pvf3 - chr2L_8_7150001 chr2L_7150001 RAL-502 226 chr2L 7164583 7164595 chr2L 7164687 7164700 4 104 6.0 6.5 6.2 0.6 117 chr2L 7164583 intergenic not near genes chr2L 7164642 intergenic not near genes chr2L 7164700 intergenic not near genes chr2L_4_7160001 chr2L_7160001 RAL-502 227 chr2L 7254526 7254544 chr2L 7254624 7254642 4 97 3.5 3.5 3.5 0.9 116 chr2L 7254526 intergenic not near genes chr2L 7254584 intergenic not near genes chr2L 7254642 intergenic not near genes chr2L_4_7250001 chr2L_7250001 RAL-502 228 chr2L 7343306 7343329 chr2L 7350441 7350447 roo 7 7132 10.0 4.5 7.2 0.9 7141 chr2L 7343306 intron Wnt6 + chr2L 7346876 intron Wnt6 + chr2L 7350447 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-502 229 chr2L 7343333 7343350 chr2L 7350440 7350485 roo 6 7129 6.5 4.5 5.5 0.9 7152 chr2L 7343333 intron Wnt6 + chr2L 7346909 intron Wnt6 + chr2L 7350485 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-502 230 chr2L 7436177 7436209 chr2L 7436291 7436305 5 105 4.0 1.0 2.5 1.4 128 chr2L 7436177 intergenic not near genes chr2L 7436241 intergenic not near genes chr2L 7436305 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-502 231 chr2L 7438767 7438800 chr2L 7439333 7439365 7 565 16.5 14.5 15.5 0.4 598 chr2L 7438767 intron CG5973 + chr2L 7439066 intron CG5973 + chr2L 7439365 intron CG5973 + chr2L_7_7435001 chr2L_7435001 RAL-502 232 chr2L 7502736 7502765 chr2L 7502815 7502861 5 88 17.0 15.5 16.2 0.3 125 chr2L 7502736 intron RapGAP1 - chr2L 7502798 intron RapGAP1 - chr2L 7502861 intron RapGAP1 - chr2L_5_7500001 chr2L_7500001 RAL-502 233 chr2L 7512895 7512922 chr2L 7512996 7513023 10 100 13.5 16.0 14.8 0.6 128 chr2L 7512895 intron RapGAP1 - chr2L 7512959 intron RapGAP1 - chr2L 7513023 intron RapGAP1 - chr2L_10_7510001 chr2L_7510001 RAL-502 234 chr2L 7567473 7567536 chr2L 7567570 7567604 11 99 5.5 5.0 5.2 1.8 131 chr2L 7567473 intron RapGAP1 - chr2L 7567538 intron RapGAP1 - chr2L 7567604 intron RapGAP1 - chr2L_11_7565001 chr2L_7565001 RAL-502 235 chr2L 7600828 7600838 chr2L 7600922 7600929 4 94 12.0 5.5 8.8 0.4 101 chr2L 7600828 intergenic not near genes chr2L 7600878 intergenic not near genes chr2L 7600929 intergenic not near genes chr2L_4_7600001 chr2L_7600001 RAL-502 236 chr2L 7600841 7600858 chr2L 7600918 7600948 6 91 9.0 6.5 7.8 0.7 107 chr2L 7600841 intergenic not near genes chr2L 7600894 intergenic not near genes chr2L 7600948 intergenic not near genes chr2L_6_7600001 chr2L_7600001 RAL-502 237 chr2L 7602596 7602636 chr2L 7602695 7602735 5 98 4.5 2.5 3.5 1.1 139 chr2L 7602596 intergenic not near genes chr2L 7602666 intergenic not near genes chr2L 7602735 intergenic not near genes chr2L_5_7600001 chr2L_7600001 RAL-502 238 chr2L 7629139 7629188 chr2L 7629246 7629295 10 104 7.0 9.5 8.2 1.1 156 chr2L 7629139 intergenic not near genes chr2L 7629217 intergenic not near genes chr2L 7629295 intergenic not near genes chr2L_10_7625001 chr2L_7625001 RAL-502 239 chr2L 7649889 7649906 chr2L 7649988 7650005 4 99 9.5 7.0 8.2 0.4 116 chr2L 7649889 intron Slob - chr2L 7649947 intron Slob - chr2L 7650005 intron Slob - chr2L_4_7645001 chr2L_7645001 RAL-502 240 chr2L 7649914 7649927 chr2L 7649978 7650025 6 89 7.0 5.5 6.2 0.8 111 chr2L 7649914 intron Slob - chr2L 7649970 intron Slob - chr2L 7650025 intron Slob - chr2L_6_7645001 chr2L_7645001 RAL-502 241 chr2L 7664960 7664977 chr2L 7665065 7665082 5 105 8.0 9.0 8.5 0.5 122 chr2L 7664960 intron Slob - chr2L 7665021 intron Slob - chr2L 7665082 intron Slob - chr2L_5_7665001 chr2L_7665001 RAL-502 242 chr2L 7714538 7714562 chr2L 7714719 7714765 4 198 20.5 25.5 23.0 0.2 227 chr2L 7714538 exon CG33296 - chr2L 7714652 intron CG33296 - chr2L 7714765 exon CG33296 - chr2L_4_7710001 chr2L_7710001 RAL-502 243 chr2L 7765818 7765830 chr2L 7765913 7765923 6 96 15.5 5.0 10.2 0.5 105 chr2L 7765818 3` UTR CG7196 + chr2L 7765870 3` UTR CG7196 + chr2L 7765923 intergenic CG7196 + chr2L_6_7765001 chr2L_7765001 RAL-502 244 chr2L 7769784 7769828 chr2L 7769883 7769927 4 99 9.5 7.0 8.2 0.4 143 chr2L 7769784 intron CG7191 + chr2L 7769856 intron CG7191 + chr2L 7769927 intron CG7191 + chr2L_4_7765001 chr2L_7765001 RAL-502 245 chr2L 7775612 7775665 chr2L 7775724 7775777 4 112 12.5 11.0 11.8 0.3 165 chr2L 7775612 intergenic CG7179 - chr2L 7775694 intergenic CG7179 - chr2L 7775777 intergenic CG7179 - chr2L_4_7775001 chr2L_7775001 RAL-502 246 chr2L 7861297 7861336 chr2L 7861415 7861460 4 119 10.5 9.5 10.0 0.4 163 chr2L 7861297 intergenic TwdlE - chr2L 7861378 intergenic not near genes chr2L 7861460 intergenic not near genes chr2L_4_7860001 chr2L_7860001 RAL-502 247 chr2L 7867558 7867582 chr2L 7867672 7867686 5 112 5.0 4.5 4.8 0.9 128 chr2L 7867558 intron Proc - chr2L 7867622 intron Proc - chr2L 7867686 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-502 248 chr2L 7922730 7922774 chr2L 7922830 7922875 11 99 16.0 14.5 15.2 0.7 145 chr2L 7922730 intron Snoo - chr2L 7922802 intron Snoo - chr2L 7922875 intron Snoo - chr2L_11_7920001 chr2L_7920001 RAL-502 249 chr2L 7941183 7941193 chr2L 7941282 7941292 4 99 3.5 7.5 5.5 0.6 109 chr2L 7941183 intron Snoo - chr2L 7941238 intron Snoo - chr2L 7941292 intron Snoo - chr2L_4_7940001 chr2L_7940001 RAL-502 250 chr2L 7959022 7959073 chr2L 7960453 7960504 pogo 11 1425 3.5 1.5 2.5 3.1 1482 chr2L 7959022 intron Snoo - chr2L 7959763 intron Snoo - chr2L 7960504 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-502 251 chr2L 7977069 7977108 chr2L 7984065 7984104 297 16 6995 4.5 2.5 3.5 3.6 7035 chr2L 7977069 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984104 intron,5` UTR Snoo -,CG7231 + chr2L_16_7980001 chr2L_7980001 RAL-502 252 chr2L 7997647 7997698 chr2L 7997759 7997809 10 110 13.5 12.5 13.0 0.7 162 chr2L 7997647 5` UTR CG7227 - chr2L 7997728 intergenic CG7227 - chr2L 7997809 intergenic CG7227 - chr2L_10_7995001 chr2L_7995001 RAL-502 253 chr2L 8013594 8013611 chr2L 8018819 8018835 copia 6 5225 6.5 0.0 3.2 1.4 5241 chr2L 8013594 intron Tg + chr2L 8016214 intron Tg + chr2L 8018835 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-502 254 chr2L 8013631 8013644 chr2L 8023587 8023599 copia 5 9956 2.5 2.5 2.5 1.4 9968 chr2L 8013631 intron Tg + chr2L 8018615 intron Tg + chr2L 8023599 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-502 255 chr2L 8044081 8044107 chr2L 8044180 8044206 4 99 7.5 9.5 8.5 0.4 125 chr2L 8044081 intron CG7466 + chr2L 8044144 intron CG7466 + chr2L 8044206 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-502 256 chr2L 8044113 8044128 chr2L 8044179 8044214 4 87 6.0 9.5 7.8 0.5 101 chr2L 8044113 intron CG7466 + chr2L 8044164 intron CG7466 + chr2L 8044214 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-502 257 chr2L 8167147 8167172 chr2L 8167258 8167283 4 110 8.0 13.0 10.5 0.3 136 chr2L 8167147 intron Piezo + chr2L 8167215 intron Piezo + chr2L 8167283 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-502 258 chr2L 8171287 8171299 chr2L 8171381 8171400 4 99 0.0 6.5 3.2 1.0 113 chr2L 8171287 intron Piezo + chr2L 8171344 intron Piezo + chr2L 8171400 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-502 259 chr2L 8244719 8244738 chr2L 8244861 8244880 4 142 12.5 19.0 15.8 0.2 161 chr2L 8244719 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244880 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-502 260 chr2L 8285000 8285037 chr2L 8285095 8285133 12 95 5.0 2.5 3.8 2.5 133 chr2L 8285000 intron Btk29A - chr2L 8285066 intron Btk29A - chr2L 8285133 intron Btk29A - chr2L_12_8285001 chr2L_8285001 RAL-502 261 chr2L 8336929 8336937 chr2L 8337026 8337035 4 98 4.5 7.5 6.0 0.6 106 chr2L 8336929 intergenic not near genes chr2L 8336982 intergenic not near genes chr2L 8337035 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-502 262 chr2L 8411795 8411807 chr2L 8411965 8411979 7 170 10.0 5.0 7.5 0.8 184 chr2L 8411795 5` UTR CG13397 - chr2L 8411887 intergenic CG13397 -,CG13398 - chr2L 8411979 intergenic CG13397 -,CG13398 - chr2L_7_8410001 chr2L_8410001 RAL-502 263 chr2L 8452409 8452441 chr2L 8461597 8461632 roo 11 9189 4.5 8.5 6.5 1.5 9223 chr2L 8452409 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461632 intron fu12 - chr2L_11_8455001 chr2L_8455001 RAL-502 264 chr2L 8498187 8498232 chr2L 8498288 8498333 4 100 13.0 12.5 12.8 0.3 146 chr2L 8498187 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498333 intron Dh31 - chr2L_4_8495001 chr2L_8495001 RAL-502 265 chr2L 8503588 8503616 chr2L 8503691 8503719 4 103 26.0 23.0 24.5 0.2 131 chr2L 8503588 intron Dh31 - chr2L 8503654 intron Dh31 - chr2L 8503719 intron Dh31 - chr2L_4_8500001 chr2L_8500001 RAL-502 266 chr2L 8521733 8521780 chr2L 8521838 8521885 5 105 5.0 7.0 6.0 0.7 152 chr2L 8521733 3` UTR CG13091 + chr2L 8521809 3` UTR CG13091 + chr2L 8521885 intergenic Acer +,CG13091 + chr2L_5_8520001 chr2L_8520001 RAL-502 267 chr2L 8551419 8551433 chr2L 8551654 8551668 4 235 14.5 8.5 11.5 0.3 249 chr2L 8551419 intron Sema-1a + chr2L 8551544 intron Sema-1a + chr2L 8551668 intron Sema-1a + chr2L_4_8550001 chr2L_8550001 RAL-502 268 chr2L 8553454 8553492 chr2L 8553616 8553628 5 155 10.5 5.5 8.0 0.6 174 chr2L 8553454 intron Sema-1a + chr2L 8553541 intron Sema-1a + chr2L 8553628 intron Sema-1a + chr2L_5_8550001 chr2L_8550001 RAL-502 269 chr2L 8559172 8559203 chr2L 8559483 8559487 8 308 16.5 15.0 15.8 0.5 315 chr2L 8559172 intron Sema-1a + chr2L 8559330 intron Sema-1a + chr2L 8559487 intron Sema-1a + chr2L_8_8555001 chr2L_8555001 RAL-502 270 chr2L 8587291 8587306 chr2L 8587388 8587396 5 95 9.5 11.0 10.2 0.4 105 chr2L 8587291 intron Sema-1a + chr2L 8587344 intron Sema-1a + chr2L 8587396 intron Sema-1a + chr2L_5_8585001 chr2L_8585001 RAL-502 271 chr2L 8594446 8594485 chr2L 8601520 8601559 297 8 7073 9.5 0.0 4.8 1.4 7113 chr2L 8594446 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598002 intron Sema-1a + chr2L 8601559 intron Sema-1a + chr2L_8_8595001 chr2L_8595001 RAL-502 272 chr2L 8625458 8625481 chr2L 8625728 8625751 5 270 8.5 12.0 10.2 0.4 293 chr2L 8625458 intron Sema-1a + chr2L 8625604 intron Sema-1a + chr2L 8625751 intron Sema-1a + chr2L_5_8625001 chr2L_8625001 RAL-502 273 chr2L 8625490 8625520 chr2L 8625631 8625665 10 193 2.0 2.0 2.0 3.3 175 chr2L 8625490 intron Sema-1a + chr2L 8625578 intron Sema-1a + chr2L 8625665 intron Sema-1a + chr2L_10_8625001 chr2L_8625001 RAL-502 274 chr2L 8634177 8634220 chr2L 8634275 8634314 6 97 8.5 7.5 8.0 0.7 137 chr2L 8634177 intron Sema-1a + chr2L 8634246 intron Sema-1a + chr2L 8634314 intron Sema-1a + chr2L_6_8630001 chr2L_8630001 RAL-502 275 chr2L 8687073 8687096 chr2L 8687197 8687219 5 124 11.5 5.0 8.2 0.5 146 chr2L 8687073 intergenic Trs23 +,Hnf4 - chr2L 8687146 intergenic Hnf4 -,Trs23 + chr2L 8687219 intergenic Hnf4 -,Trs23 + chr2L_5_8685001 chr2L_8685001 RAL-502 276 chr2L 8698310 8698348 chr2L 8698468 8698507 7 158 12.0 7.0 9.5 0.7 197 chr2L 8698310 intron Hnf4 - chr2L 8698408 intron Hnf4 - chr2L 8698507 intron Hnf4 - chr2L_7_8695001 chr2L_8695001 RAL-502 277 chr2L 8719185 8719221 chr2L 8719280 8719317 8 94 16.0 10.5 13.2 0.6 132 chr2L 8719185 intron raw - chr2L 8719251 intron raw - chr2L 8719317 intron raw - chr2L_8_8715001 chr2L_8715001 RAL-502 278 chr2L 8723099 8723118 chr2L 8731496 8731511 Tirant 12 8396 5.5 3.5 4.5 2.2 8412 chr2L 8723099 intron raw - chr2L 8727305 intron raw - chr2L 8731511 intron raw - chr2L_12_8725001 chr2L_8725001 RAL-502 279 chr2L 8723124 8723148 chr2L 8731490 8731534 Tirant 12 8387 3.0 3.0 3.0 3.0 8410 chr2L 8723124 intron raw - chr2L 8727329 intron raw - chr2L 8731534 intron raw - chr2L_12_8725001 chr2L_8725001 RAL-502 280 chr2L 8768330 8768369 chr2L 8768447 8768486 5 112 9.5 16.5 13.0 0.4 156 chr2L 8768330 exon CG9463 - chr2L 8768408 exon CG9463 - chr2L 8768486 exon CG9463 - chr2L_5_8765001 chr2L_8765001 RAL-502 281 chr2L 8815213 8815245 chr2L 8815821 8815854 10 606 10.5 14.5 12.5 0.7 641 chr2L 8815213 intergenic not near genes chr2L 8815534 intergenic not near genes chr2L 8815854 intergenic not near genes chr2L_10_8815001 chr2L_8815001 RAL-502 282 chr2L 8824618 8824651 chr2L 8824733 8824751 4 110 5.5 9.5 7.5 0.5 133 chr2L 8824618 intergenic not near genes chr2L 8824684 intergenic not near genes chr2L 8824751 intergenic not near genes chr2L_4_8820001 chr2L_8820001 RAL-502 283 chr2L 8826154 8826203 chr2L 8826264 8826313 7 108 12.0 12.5 12.2 0.5 159 chr2L 8826154 5` UTR SoxN + chr2L 8826234 5` UTR SoxN + chr2L 8826313 5` UTR SoxN + chr2L_7_8825001 chr2L_8825001 RAL-502 284 chr2L 8860216 8860227 chr2L 8860319 8860322 6 112 8.0 6.5 7.2 0.7 106 chr2L 8860216 intergenic not near genes chr2L 8860269 intergenic not near genes chr2L 8860322 intergenic not near genes chr2L_6_8860001 chr2L_8860001 RAL-502 285 chr2L 8875453 8875470 chr2L 8875551 8875567 4 98 6.0 8.5 7.2 0.5 114 chr2L 8875453 intergenic not near genes chr2L 8875510 intergenic not near genes chr2L 8875567 intergenic not near genes chr2L_4_8875001 chr2L_8875001 RAL-502 286 chr2L 8904343 8904372 chr2L 8904577 8904606 5 234 10.5 2.0 6.2 0.7 263 chr2L 8904343 intron CG34398 + chr2L 8904474 intron CG34398 + chr2L 8904606 intron CG34398 + chr2L_5_8900001 chr2L_8900001 RAL-502 287 chr2L 8939649 8939694 chr2L 8939749 8939794 5 100 10.5 12.5 11.5 0.4 145 chr2L 8939649 3` UTR Tsp29Fb + chr2L 8939722 3` UTR Tsp29Fb + chr2L 8939794 3` UTR CG9510 - chr2L_5_8935001 chr2L_8935001 RAL-502 288 chr2L 8956212 8956232 chr2L 8956310 8956328 4 97 8.0 6.5 7.2 0.5 116 chr2L 8956212 intron CG31886 - chr2L 8956270 intron CG31886 - chr2L 8956328 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-502 289 chr2L 8976210 8976252 chr2L 8976321 8976350 5 106 5.0 6.5 5.8 0.7 140 chr2L 8976210 intergenic not near genes chr2L 8976280 intergenic not near genes chr2L 8976350 intergenic not near genes chr2L_5_8975001 chr2L_8975001 RAL-502 290 chr2L 9000264 9000312 chr2L 9007794 9007842 roo 28 7529 6.0 1.5 3.8 5.8 7578 chr2L 9000264 intergenic Try29F + chr2L 9004053 intergenic not near genes chr2L 9007842 intergenic not near genes chr2L_28_9000001 chr2L_9000001 RAL-502 291 chr2L 9040013 9040058 chr2L 9040120 9040165 17 106 4.0 1.5 2.8 4.5 152 chr2L 9040013 intergenic not near genes chr2L 9040089 intergenic not near genes chr2L 9040165 intergenic not near genes chr2L_17_9040001 chr2L_9040001 RAL-502 292 chr2L 9040866 9040915 chr2L 9040962 9041011 7 95 14.0 12.0 13.0 0.5 145 chr2L 9040866 intergenic not near genes chr2L 9040938 intergenic not near genes chr2L 9041011 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-502 293 chr2L 9053395 9053430 chr2L 9053650 9053685 12 253 5.0 0.0 2.5 3.4 290 chr2L 9053395 exon CG31708 - chr2L 9053540 intron CG31708 - chr2L 9053685 intron CG31708 - chr2L_12_9050001 chr2L_9050001 RAL-502 294 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133322 16.0 25.0 20.5 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-502 295 chr2L 9113784 9113799 chr2L 9113912 9113929 6 129 8.0 0.0 4.0 1.2 145 chr2L 9113784 intergenic Or30a + chr2L 9113856 intergenic not near genes chr2L 9113929 intergenic not near genes chr2L_6_9110001 chr2L_9110001 RAL-502 296 chr2L 9118602 9118651 chr2L 9118772 9118816 9 169 15.0 13.5 14.2 0.6 214 chr2L 9118602 intergenic not near genes chr2L 9118709 intergenic not near genes chr2L 9118816 intergenic not near genes chr2L_9_9115001 chr2L_9115001 RAL-502 297 chr2L 9195867 9195881 chr2L 9195970 9195984 4 102 11.0 10.0 10.5 0.3 117 chr2L 9195867 intron tai + chr2L 9195926 intron tai + chr2L 9195984 intron tai + chr2L_4_9195001 chr2L_9195001 RAL-502 298 chr2L 9217974 9217982 chr2L 9222755 9222789 Doc 5 4800 4.5 4.5 4.5 0.9 4815 chr2L 9217974 intron tai + chr2L 9220382 intron tai + chr2L 9222789 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-502 299 chr2L 9227363 9227404 chr2L 9227473 9227473 14 103 10.5 11.5 11.0 1.2 110 chr2L 9227363 intron tai + chr2L 9227418 intron tai + chr2L 9227473 intron tai + chr2L_14_9225001 chr2L_9225001 RAL-502 300 chr2L 9235226 9235249 chr2L 9235350 9235375 9 125 14.0 10.5 12.2 0.7 149 chr2L 9235226 exon tai + chr2L 9235300 intron tai + chr2L 9235375 intron tai + chr2L_9_9235001 chr2L_9235001 RAL-502 301 chr2L 9251129 9251165 chr2L 9251246 9251259 7 114 17.5 18.5 18.0 0.4 130 chr2L 9251129 intergenic aust -,borr - chr2L 9251194 intergenic aust -,borr - chr2L 9251259 intergenic borr -,aust - chr2L_7_9250001 chr2L_9250001 RAL-502 302 chr2L 9264329 9264361 chr2L 9264449 9264480 5 120 11.5 6.0 8.8 0.5 151 chr2L 9264329 intron Ggamma30A + chr2L 9264404 intron Ggamma30A + chr2L 9264480 intron Ggamma30A + chr2L_5_9260001 chr2L_9260001 RAL-502 303 chr2L 9287319 9287355 chr2L 9287436 9287472 6 117 12.0 17.0 14.5 0.4 153 chr2L 9287319 intron Ggamma30A + chr2L 9287396 intron Ggamma30A + chr2L 9287472 intron Ggamma30A + chr2L_6_9285001 chr2L_9285001 RAL-502 304 chr2L 9297358 9297404 chr2L 9297454 9297497 9 96 16.5 17.0 16.8 0.5 139 chr2L 9297358 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297497 3` UTR Ggamma30A + chr2L_9_9295001 chr2L_9295001 RAL-502 305 chr2L 9303470 9303480 chr2L 9303554 9303577 4 94 6.5 15.0 10.8 0.3 107 chr2L 9303470 intergenic not near genes chr2L 9303524 intergenic not near genes chr2L 9303577 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-502 306 chr2L 9337443 9337480 chr2L 9337539 9337571 7 99 26.0 26.5 26.2 0.3 128 chr2L 9337443 intron Eaat1 + chr2L 9337507 intron Eaat1 + chr2L 9337571 intron Eaat1 + chr2L_7_9335001 chr2L_9335001 RAL-502 307 chr2L 9355170 9355192 chr2L 9356134 9356162 8 967 9.5 13.5 11.5 0.6 992 chr2L 9355170 intergenic not near genes chr2L 9355666 intergenic not near genes chr2L 9356162 intergenic not near genes chr2L_8_9355001 chr2L_9355001 RAL-502 308 chr2L 9362138 9362145 chr2L 9362236 9362243 4 98 14.5 14.5 14.5 0.3 105 chr2L 9362138 intergenic not near genes chr2L 9362190 intergenic not near genes chr2L 9362243 intergenic not near genes chr2L_4_9360001 chr2L_9360001 RAL-502 309 chr2L 9364279 9364332 chr2L 9364398 9364443 5 115 9.0 9.0 9.0 0.5 164 chr2L 9364279 intergenic CR43404 + chr2L 9364361 intron CR43404 + chr2L 9364443 intron CR43404 + chr2L_5_9360001 chr2L_9360001 RAL-502 310 chr2L 9380230 9380315 chr2L 9380345 9380423 17 111 3.5 4.5 4.0 3.4 193 chr2L 9380230 exon Shawl - chr2L 9380326 intron Shawl - chr2L 9380423 exon Shawl - chr2L_17_9380001 chr2L_9380001 RAL-502 311 chr2L 9387231 9387276 chr2L 9387348 9387394 4 118 1.5 2.0 1.8 1.4 163 chr2L 9387231 intron Shawl - chr2L 9387312 intron Shawl - chr2L 9387394 intron,5` UTR Shawl -,Aldh + chr2L_4_9385001 chr2L_9385001 RAL-502 312 chr2L 9393485 9393527 chr2L 9396468 9396512 jockey 17 2984 4.0 4.5 4.2 3.3 3027 chr2L 9393485 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396512 intron Shawl - chr2L_17_9390001 chr2L_9390001 RAL-502 313 chr2L 9439607 9439646 chr2L 9439705 9439744 4 95 6.5 5.0 5.8 0.6 137 chr2L 9439607 intron numb + chr2L 9439676 intron numb + chr2L 9439744 intron numb + chr2L_4_9435001 chr2L_9435001 RAL-502 314 chr2L 9446583 9446623 chr2L 9446706 9446748 5 120 5.5 9.0 7.2 0.6 165 chr2L 9446583 intron numb + chr2L 9446666 intron numb + chr2L 9446748 intron numb + chr2L_5_9445001 chr2L_9445001 RAL-502 315 chr2L 9454956 9454987 chr2L 9455078 9455092 4 118 10.5 9.5 10.0 0.4 136 chr2L 9454956 intron numb + chr2L 9455024 intron numb + chr2L 9455092 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-502 316 chr2L 9457076 9457103 chr2L 9457149 9457181 7 88 16.0 16.5 16.2 0.4 105 chr2L 9457076 intron numb + chr2L 9457128 intron numb + chr2L 9457181 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-502 317 chr2L 9490527 9490551 chr2L 9490604 9490651 7 97 5.0 9.0 7.0 0.9 124 chr2L 9490527 intergenic not near genes chr2L 9490589 intergenic not near genes chr2L 9490651 intergenic not near genes chr2L_7_9490001 chr2L_9490001 RAL-502 318 chr2L 9526869 9526876 chr2L 9526946 9526984 10 107 18.0 22.0 20.0 0.5 115 chr2L 9526869 intron Oatp30B + chr2L 9526926 intron Oatp30B + chr2L 9526984 intron Oatp30B + chr2L_10_9525001 chr2L_9525001 RAL-502 319 chr2L 9619494 9619521 chr2L 9619851 9619875 4 355 9.0 6.5 7.8 0.5 381 chr2L 9619494 intron GlcAT-S + chr2L 9619684 intron GlcAT-S + chr2L 9619875 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-502 320 chr2L 9633835 9633856 chr2L 9633957 9634000 4 140 13.5 11.0 12.2 0.3 165 chr2L 9633835 intergenic Apoltp + chr2L 9633918 intergenic Apoltp + chr2L 9634000 intergenic Apoltp + chr2L_4_9630001 chr2L_9630001 RAL-502 321 chr2L 9663252 9663274 chr2L 9663364 9663382 8 111 12.5 5.0 8.8 0.8 130 chr2L 9663252 intergenic not near genes chr2L 9663317 intergenic not near genes chr2L 9663382 intergenic not near genes chr2L_8_9660001 chr2L_9660001 RAL-502 322 chr2L 9686343 9686375 chr2L 9686433 9686464 7 93 11.5 12.5 12.0 0.5 121 chr2L 9686343 intron Pka-C1 - chr2L 9686404 intron Pka-C1 - chr2L 9686464 intron Pka-C1 - chr2L_7_9685001 chr2L_9685001 RAL-502 323 chr2L 9706142 9706153 chr2L 9706255 9706266 4 113 7.0 12.0 9.5 0.4 124 chr2L 9706142 intron pelo + chr2L 9706204 intron pelo + chr2L 9706266 intron pelo + chr2L_4_9705001 chr2L_9705001 RAL-502 324 chr2L 9730955 9731005 chr2L 9731057 9731108 10 96 5.5 7.0 6.2 1.4 153 chr2L 9730955 intron Nckx30C - chr2L 9731032 intron Nckx30C - chr2L 9731108 intron Nckx30C - chr2L_10_9730001 chr2L_9730001 RAL-502 325 chr2L 9775967 9776003 chr2L 9776069 9776103 10 102 4.0 2.0 3.0 2.5 136 chr2L 9775967 intergenic not near genes chr2L 9776035 intergenic not near genes chr2L 9776103 intergenic not near genes chr2L_10_9775001 chr2L_9775001 RAL-502 326 chr2L 9817194 9817225 chr2L 9817304 9817336 5 105 12.0 11.0 11.5 0.4 142 chr2L 9817194 intron nAChRalpha6 - chr2L 9817265 intron nAChRalpha6 - chr2L 9817336 intron nAChRalpha6 - chr2L_5_9815001 chr2L_9815001 RAL-502 327 chr2L 9847790 9847816 chr2L 9847979 9848005 4 189 8.5 5.0 6.8 0.5 215 chr2L 9847790 intron nAChRalpha6 - chr2L 9847898 intron nAChRalpha6 - chr2L 9848005 intron nAChRalpha6 - chr2L_4_9845001 chr2L_9845001 RAL-502 328 chr2L 9883157 9883170 chr2L 9883295 9883307 6 137 9.5 6.5 8.0 0.7 150 chr2L 9883157 intron nAChRalpha6 - chr2L 9883232 intron nAChRalpha6 - chr2L 9883307 intron nAChRalpha6 - chr2L_6_9880001 chr2L_9880001 RAL-502 329 chr2L 9892482 9892535 chr2L 9892578 9892631 5 96 9.0 11.0 10.0 0.5 149 chr2L 9892482 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892631 exon mtDNA-helicase - chr2L_5_9890001 chr2L_9890001 RAL-502 330 chr2L 9973715 9973757 chr2L 9980843 9980895 HMS-Beagle 23 7134 5.5 2.5 4.0 4.6 7180 chr2L 9973715 intergenic not near genes chr2L 9977305 intergenic not near genes chr2L 9980895 intergenic not near genes chr2L_23_9975001 chr2L_9975001 RAL-502 331 chr2L 9986367 9986380 chr2L 9986445 9986494 4 99 2.0 3.0 2.5 1.1 127 chr2L 9986367 intron bib + chr2L 9986430 intron bib + chr2L 9986494 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-502 332 chr2L 10023061 10023094 chr2L 10023164 10023199 8 101 6.5 12.5 9.5 0.8 138 chr2L 10023061 intergenic not near genes chr2L 10023130 intergenic not near genes chr2L 10023199 intergenic not near genes chr2L_8_10020001 chr2L_10020001 RAL-502 333 chr2L 10024944 10024976 chr2L 10025072 10025104 7 128 5.5 7.5 6.5 0.9 160 chr2L 10024944 intergenic not near genes chr2L 10025024 intergenic not near genes chr2L 10025104 intergenic not near genes chr2L_7_10025001 chr2L_10025001 RAL-502 334 chr2L 10051740 10051752 chr2L 10051810 10051851 5 84 3.5 5.5 4.5 0.9 111 chr2L 10051740 5` UTR CR44874 + chr2L 10051796 5` UTR CR44874 + chr2L 10051851 5` UTR CR44874 + chr2L_5_10050001 chr2L_10050001 RAL-502 335 chr2L 10087456 10087486 chr2L 10087553 10087583 4 94 7.5 11.5 9.5 0.4 127 chr2L 10087456 intron CG44153 - chr2L 10087520 intron CG44153 - chr2L 10087583 intron CG44153 - chr2L_4_10085001 chr2L_10085001 RAL-502 336 chr2L 10095621 10095657 chr2L 10095721 10095756 6 97 9.5 5.0 7.2 0.7 135 chr2L 10095621 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095756 intron CG44153 - chr2L_6_10095001 chr2L_10095001 RAL-502 337 chr2L 10131482 10131522 chr2L 10131572 10131612 4 94 8.5 6.5 7.5 0.5 130 chr2L 10131482 intron CG44153 - chr2L 10131547 intron CG44153 - chr2L 10131612 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-502 338 chr2L 10138178 10138185 chr2L 10143438 10143447 Rt1c 6 5263 5.0 13.5 9.2 0.6 5269 chr2L 10138178 intron CG44153 - chr2L 10140812 intron CG44153 - chr2L 10143447 intron CG44153 - chr2L_6_10140001 chr2L_10140001 RAL-502 339 chr2L 10150402 10150435 chr2L 10150497 10150532 6 96 9.5 8.5 9.0 0.6 130 chr2L 10150402 intron,exon CG44153 -,CG4839 + chr2L 10150467 intron,intron CG44153 -,CG4839 + chr2L 10150532 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-502 340 chr2L 10156300 10156354 chr2L 10163790 10163824 blood 16 7484 3.5 4.5 4.0 3.2 7524 chr2L 10156300 intron,3` UTR CG44153 -,CG4839 + chr2L 10160062 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_16_10160001 chr2L_10160001 RAL-502 341 chr2L 10176023 10176024 chr2L 16071771 16071771 10 5895748 23.5 27.0 25.2 0.4 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_10_13120001 chr2L_13120001 RAL-502 342 chr2L 10176527 10176551 chr2L 10176830 10176836 5 299 8.0 17.0 12.5 0.4 309 chr2L 10176527 intron CG44153 - chr2L 10176682 intron CG44153 - chr2L 10176836 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-502 343 chr2L 10191439 10191451 chr2L 10191542 10191553 4 102 10.5 0.0 5.2 0.6 114 chr2L 10191439 intron,5` UTR Sur -,CG31874 - chr2L 10191496 intron,5` UTR Sur -,CG31874 - chr2L 10191553 intron Sur - chr2L_4_10190001 chr2L_10190001 RAL-502 344 chr2L 10458204 10458218 chr2L 10458311 10458334 4 114 0.0 0.5 0.2 3.3 130 chr2L 10458204 intron LM408 + chr2L 10458269 intron LM408 + chr2L 10458334 intron LM408 + chr2L_4_10455001 chr2L_10455001 RAL-502 345 chr2L 10495285 10495452 chr2L 10495382 10495558 7 103 10.0 6.5 8.2 0.8 273 chr2L 10495285 intron Myo31DF - chr2L 10495422 intron Myo31DF - chr2L 10495558 intron Myo31DF - chr2L_7_10495001 chr2L_10495001 RAL-502 346 chr2L 10515345 10515391 chr2L 10515458 10515503 5 113 9.0 10.0 9.5 0.5 158 chr2L 10515345 intron,intron CG45083 -,Fatp - chr2L 10515424 intron,intron CG45083 -,Fatp - chr2L 10515503 intron,intron CG45083 -,Fatp - chr2L_5_10515001 chr2L_10515001 RAL-502 347 chr2L 10540851 10540878 chr2L 10540949 10540975 4 96 10.5 10.0 10.2 0.4 124 chr2L 10540851 intergenic not near genes chr2L 10540913 intergenic not near genes chr2L 10540975 intergenic not near genes chr2L_4_10540001 chr2L_10540001 RAL-502 348 chr2L 10558808 10558824 chr2L 10558883 10558917 4 90 7.0 5.0 6.0 0.6 109 chr2L 10558808 intron Trim9 + chr2L 10558862 intron Trim9 + chr2L 10558917 intron Trim9 + chr2L_4_10555001 chr2L_10555001 RAL-502 349 chr2L 10592215 10592238 chr2L 10592814 10592862 6 619 16.5 5.0 10.8 0.5 647 chr2L 10592215 intron Trim9 + chr2L 10592538 intron Trim9 + chr2L 10592862 intron Trim9 + chr2L_6_10590001 chr2L_10590001 RAL-502 350 chr2L 10592824 10592866 chr2L 10600506 10600548 opus 10 7682 1.5 7.0 4.2 1.9 7724 chr2L 10592824 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600548 intron Trim9 + chr2L_10_10595001 chr2L_10595001 RAL-502 351 chr2L 10603212 10603263 chr2L 10603335 10603362 6 118 15.5 15.0 15.2 0.4 150 chr2L 10603212 intron Trim9 + chr2L 10603287 intron Trim9 + chr2L 10603362 intron Trim9 + chr2L_6_10600001 chr2L_10600001 RAL-502 352 chr2L 10634745 10634777 chr2L 10634845 10634851 10 95 6.5 4.5 5.5 1.5 106 chr2L 10634745 intron CG7329 - chr2L 10634798 intron CG7329 - chr2L 10634851 intron CG7329 - chr2L_10_10630001 chr2L_10630001 RAL-502 353 chr2L 10640618 10640672 chr2L 10640727 10640774 27 105 3.5 5.0 4.2 5.2 156 chr2L 10640618 exon CG31872 + chr2L 10640696 exon CG31872 + chr2L 10640774 exon CG31872 + chr2L_27_10640001 chr2L_10640001 RAL-502 354 chr2L 10692777 10692822 chr2L 10692893 10692940 6 118 11.0 14.5 12.8 0.4 163 chr2L 10692777 intergenic CG17108 - chr2L 10692858 intergenic CG17108 - chr2L 10692940 3` UTR CG17108 - chr2L_6_10690001 chr2L_10690001 RAL-502 355 chr2L 10704936 10704938 chr2L 10705049 10705053 4 114 9.0 12.0 10.5 0.3 117 chr2L 10704936 intron Lip2 - chr2L 10704994 intron Lip2 - chr2L 10705053 exon Lip2 - chr2L_4_10700001 chr2L_10700001 RAL-502 356 chr2L 10727270 10727303 chr2L 10727399 10727420 6 128 7.5 2.0 4.8 1.0 150 chr2L 10727270 intron CG6431 + chr2L 10727345 intron CG6431 + chr2L 10727420 intron CG6431 + chr2L_6_10725001 chr2L_10725001 RAL-502 357 chr2L 10793307 10793338 chr2L 10793404 10793434 6 96 7.0 8.0 7.5 0.7 127 chr2L 10793307 intron CG31869 - chr2L 10793370 intron CG31869 - chr2L 10793434 intron CG31869 - chr2L_6_10790001 chr2L_10790001 RAL-502 358 chr2L 10803755 10803799 chr2L 10803857 10803902 4 103 8.5 7.0 7.8 0.5 147 chr2L 10803755 intergenic not near genes chr2L 10803828 intergenic Nos - chr2L 10803902 intergenic Nos - chr2L_4_10800001 chr2L_10800001 RAL-502 359 chr2L 10852151 10852182 chr2L 10852257 10852291 6 107 3.0 5.5 4.2 1.2 140 chr2L 10852151 intron CG43129 + chr2L 10852221 intron CG43129 + chr2L 10852291 intron CG43129 + chr2L_6_10850001 chr2L_10850001 RAL-502 360 chr2L 10862838 10862868 chr2L 10864468 10864489 Rt1c 8 1626 4.0 10.0 7.0 1.0 1651 chr2L 10862838 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-502 361 chr2L 10946938 10946973 chr2L 10956167 10956194 roo 10 9228 1.5 6.5 4.0 2.0 9256 chr2L 10946938 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956194 intron dpr2 - chr2L_10_10950001 chr2L_10950001 RAL-502 362 chr2L 11169458 11169588 chr2L 11169613 11169690 9 137 2.5 2.5 2.5 2.6 232 chr2L 11169458 intron Ca-beta - chr2L 11169574 intron Ca-beta - chr2L 11169690 intron Ca-beta - chr2L_9_11165001 chr2L_11165001 RAL-502 363 chr2L 11174563 11174574 chr2L 11174998 11175009 4 434 6.5 7.5 7.0 0.5 446 chr2L 11174563 intron Ca-beta - chr2L 11174786 intron Ca-beta - chr2L 11175009 intron Ca-beta - chr2L_4_11170001 chr2L_11170001 RAL-502 364 chr2L 11224037 11224086 chr2L 11224168 11224217 12 130 13.0 12.5 12.8 0.9 180 chr2L 11224037 intron ab + chr2L 11224127 intron ab + chr2L 11224217 intron ab + chr2L_12_11220001 chr2L_11220001 RAL-502 365 chr2L 11253324 11253348 chr2L 11253425 11253449 4 101 8.5 8.0 8.2 0.4 125 chr2L 11253324 intron ab + chr2L 11253386 intron ab + chr2L 11253449 intron ab + chr2L_4_11250001 chr2L_11250001 RAL-502 366 chr2L 11292363 11292406 chr2L 11292465 11292491 14 100 5.0 6.0 5.5 2.2 128 chr2L 11292363 intergenic not near genes chr2L 11292427 intergenic not near genes chr2L 11292491 intergenic not near genes chr2L_14_11290001 chr2L_11290001 RAL-502 367 chr2L 11293727 11293746 chr2L 11293883 11293900 6 156 6.5 10.5 8.5 0.6 173 chr2L 11293727 intergenic not near genes chr2L 11293814 intergenic not near genes chr2L 11293900 intergenic not near genes chr2L_6_11290001 chr2L_11290001 RAL-502 368 chr2L 11298807 11298854 chr2L 11298903 11298950 5 97 8.0 8.5 8.2 0.5 143 chr2L 11298807 intergenic not near genes chr2L 11298878 intergenic not near genes chr2L 11298950 intergenic not near genes chr2L_5_11295001 chr2L_11295001 RAL-502 369 chr2L 11315253 11315266 chr2L 11317676 11317683 G2 6 2422 3.5 0.5 2.0 2.0 2430 chr2L 11315253 intergenic not near genes chr2L 11316468 intergenic not near genes chr2L 11317683 intergenic not near genes chr2L_6_11315001 chr2L_11315001 RAL-502 370 chr2L 11330194 11330225 chr2L 11330306 11330341 9 114 4.5 8.5 6.5 1.2 147 chr2L 11330194 intergenic not near genes chr2L 11330268 intergenic not near genes chr2L 11330341 intergenic not near genes chr2L_9_11330001 chr2L_11330001 RAL-502 371 chr2L 11413277 11413321 chr2L 11413415 11413465 11 142 6.5 3.0 4.8 1.9 188 chr2L 11413277 intergenic not near genes chr2L 11413371 intergenic not near genes chr2L 11413465 intergenic not near genes chr2L_11_11410001 chr2L_11410001 RAL-502 372 chr2L 11450101 11450154 chr2L 11450207 11450252 9 104 10.5 11.5 11.0 0.8 151 chr2L 11450101 intergenic not near genes chr2L 11450176 intergenic not near genes chr2L 11450252 intergenic not near genes chr2L_9_11450001 chr2L_11450001 RAL-502 373 chr2L 11453130 11453154 chr2L 11453240 11453276 5 125 5.5 6.5 6.0 0.7 146 chr2L 11453130 intergenic not near genes chr2L 11453203 intergenic not near genes chr2L 11453276 intergenic not near genes chr2L_5_11450001 chr2L_11450001 RAL-502 374 chr2L 11455549 11455592 chr2L 11455647 11455658 4 92 7.5 9.5 8.5 0.4 109 chr2L 11455549 intergenic not near genes chr2L 11455604 intergenic not near genes chr2L 11455658 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-502 375 chr2L 11537742 11537773 chr2L 11537879 11537910 7 136 5.5 5.0 5.2 1.1 168 chr2L 11537742 intergenic not near genes chr2L 11537826 intergenic not near genes chr2L 11537910 intergenic not near genes chr2L_7_11535001 chr2L_11535001 RAL-502 376 chr2L 11540587 11540606 chr2L 11548009 11548028 Tabor 4 7422 3.0 7.0 5.0 0.7 7441 chr2L 11540587 intergenic not near genes chr2L 11544308 intergenic not near genes chr2L 11548028 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-502 377 chr2L 11563617 11563670 chr2L 11568841 11568892 copia 17 5220 4.0 4.0 4.0 3.4 5275 chr2L 11563617 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568892 intergenic not near genes chr2L_17_11565001 chr2L_11565001 RAL-502 378 chr2L 11610525 11610568 chr2L 11610624 11610666 4 98 10.0 8.5 9.2 0.4 141 chr2L 11610525 intron,3` UTR kek2 +,spag4 - chr2L 11610596 intron,3` UTR kek2 +,spag4 - chr2L 11610666 intron,exon kek2 +,spag4 - chr2L_4_11610001 chr2L_11610001 RAL-502 379 chr2L 11614059 11614082 chr2L 11615551 11615563 hopper2 7 1494 4.0 5.0 4.5 1.3 1504 chr2L 11614059 intron kek2 + chr2L 11614811 intron kek2 + chr2L 11615563 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-502 380 chr2L 11629568 11629599 chr2L 11629678 11629715 7 114 12.5 10.5 11.5 0.6 147 chr2L 11629568 intergenic not near genes chr2L 11629642 intergenic not near genes chr2L 11629715 intergenic not near genes chr2L_7_11625001 chr2L_11625001 RAL-502 381 chr2L 11633149 11633195 chr2L 11633270 11633315 4 118 12.5 13.0 12.8 0.3 166 chr2L 11633149 intergenic not near genes chr2L 11633232 intergenic not near genes chr2L 11633315 intergenic not near genes chr2L_4_11630001 chr2L_11630001 RAL-502 382 chr2L 11689942 11689959 chr2L 11690139 11690181 4 214 7.5 8.0 7.8 0.5 239 chr2L 11689942 intergenic not near genes chr2L 11690062 intergenic not near genes chr2L 11690181 intergenic not near genes chr2L_4_11690001 chr2L_11690001 RAL-502 383 chr2L 11713491 11713516 chr2L 11720978 11721004 blood 9 7481 7.5 4.5 6.0 1.3 7513 chr2L 11713491 intergenic not near genes chr2L 11717248 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-502 384 chr2L 11713517 11713536 chr2L 11720975 11721005 blood 8 7479 6.0 3.5 4.8 1.4 7488 chr2L 11713517 intergenic not near genes chr2L 11717261 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-502 385 chr2L 11750316 11750341 chr2L 11750618 11750646 4 305 8.0 4.5 6.2 0.6 330 chr2L 11750316 intergenic not near genes chr2L 11750481 intergenic not near genes chr2L 11750646 intergenic not near genes chr2L_4_11750001 chr2L_11750001 RAL-502 386 chr2L 11752848 11752889 chr2L 11753158 11753193 5 309 11.5 7.0 9.2 0.5 345 chr2L 11752848 intergenic CG42470 - chr2L 11753020 3` UTR CG42470 - chr2L 11753193 3` UTR CG42470 - chr2L_5_11750001 chr2L_11750001 RAL-502 387 chr2L 11770580 11770618 chr2L 11770685 11770696 7 102 17.0 11.5 14.2 0.5 116 chr2L 11770580 intergenic not near genes chr2L 11770638 intergenic not near genes chr2L 11770696 intergenic not near genes chr2L_7_11770001 chr2L_11770001 RAL-502 388 chr2L 11781024 11781188 chr2L 11781128 11781284 6 101 4.0 5.0 4.5 1.1 260 chr2L 11781024 intergenic not near genes chr2L 11781154 intergenic not near genes chr2L 11781284 intergenic not near genes chr2L_6_11780001 chr2L_11780001 RAL-502 389 chr2L 11820433 11820463 chr2L 11820534 11820564 5 101 10.5 14.5 12.5 0.4 131 chr2L 11820433 intron Pde1c - chr2L 11820498 intron Pde1c - chr2L 11820564 intron Pde1c - chr2L_5_11820001 chr2L_11820001 RAL-502 390 chr2L 11845068 11845100 chr2L 11845505 11845538 6 437 4.5 15.0 9.8 0.6 470 chr2L 11845068 intron Pde1c - chr2L 11845303 intron Pde1c - chr2L 11845538 intron Pde1c - chr2L_6_11845001 chr2L_11845001 RAL-502 391 chr2L 11856054 11856098 chr2L 11856172 11856216 8 111 9.5 12.0 10.8 0.7 162 chr2L 11856054 intron Pde1c - chr2L 11856135 intron Pde1c - chr2L 11856216 intron Pde1c - chr2L_8_11855001 chr2L_11855001 RAL-502 392 chr2L 11866985 11867004 chr2L 11867117 11867136 4 131 5.5 9.5 7.5 0.5 151 chr2L 11866985 intron Pde1c - chr2L 11867060 intron Pde1c - chr2L 11867136 intron Pde1c - chr2L_4_11865001 chr2L_11865001 RAL-502 393 chr2L 11892531 11892819 chr2L 11892640 11892904 9 105 17.0 2.5 9.8 0.8 373 chr2L 11892531 intron Pde1c - chr2L 11892718 intron Pde1c - chr2L 11892904 intron Pde1c - chr2L_9_11890001 chr2L_11890001 RAL-502 394 chr2L 12067309 12067356 chr2L 12074380 12074428 297 8 7071 4.5 4.0 4.2 1.5 7119 chr2L 12067309 intergenic not near genes chr2L 12070868 intergenic not near genes chr2L 12074428 intergenic not near genes chr2L_8_12070001 chr2L_12070001 RAL-502 395 chr2L 12116855 12116892 chr2L 12116960 12116991 4 103 13.0 18.5 15.8 0.2 136 chr2L 12116855 intron CG17211 + chr2L 12116923 intron CG17211 + chr2L 12116991 intron CG17211 + chr2L_4_12115001 chr2L_12115001 RAL-502 396 chr2L 12121878 12121917 chr2L 12121980 12122018 6 101 9.0 5.0 7.0 0.8 140 chr2L 12121878 intron CG17211 + chr2L 12121948 intron CG17211 + chr2L 12122018 intron CG17211 + chr2L_6_12120001 chr2L_12120001 RAL-502 397 chr2L 12131448 12131495 chr2L 12131564 12131611 12 116 6.0 5.0 5.5 1.8 163 chr2L 12131448 intron rho-6 - chr2L 12131530 intron rho-6 - chr2L 12131611 intron rho-6 - chr2L_12_12130001 chr2L_12130001 RAL-502 398 chr2L 12132707 12132749 chr2L 12132813 12132852 7 105 0.0 2.0 1.0 3.5 145 chr2L 12132707 intron rho-6 - chr2L 12132780 intron rho-6 - chr2L 12132852 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-502 399 chr2L 12141157 12141190 chr2L 12141272 12141290 7 104 6.0 1.0 3.5 1.6 133 chr2L 12141157 intergenic not near genes chr2L 12141224 intergenic not near genes chr2L 12141290 intergenic not near genes chr2L_7_12140001 chr2L_12140001 RAL-502 400 chr2L 12144209 12144248 chr2L 12144765 12144815 7 565 8.0 4.0 6.0 1.0 606 chr2L 12144209 intron CG31760 + chr2L 12144512 intron CG31760 + chr2L 12144815 intron CG31760 + chr2L_7_12140001 chr2L_12140001 RAL-502 401 chr2L 12175796 12175835 chr2L 12175897 12175937 4 101 4.5 2.5 3.5 0.9 141 chr2L 12175796 intron,intron aret +,atilla - chr2L 12175866 intron,intron aret +,atilla - chr2L 12175937 intron,intron aret +,atilla - chr2L_4_12175001 chr2L_12175001 RAL-502 402 chr2L 12179753 12179792 chr2L 12179859 12179866 7 101 8.0 9.0 8.5 0.7 113 chr2L 12179753 intron aret + chr2L 12179810 intron aret + chr2L 12179866 intron aret + chr2L_7_12175001 chr2L_12175001 RAL-502 403 chr2L 12203280 12203326 chr2L 12203381 12203414 7 97 9.5 9.5 9.5 0.7 134 chr2L 12203280 intron aret + chr2L 12203347 intron aret + chr2L 12203414 intron aret + chr2L_7_12200001 chr2L_12200001 RAL-502 404 chr2L 12269823 12269842 chr2L 12270057 12270076 6 234 8.0 11.5 9.8 0.6 253 chr2L 12269823 intron aret + chr2L 12269950 intron aret + chr2L 12270076 intron aret + chr2L_6_12265001 chr2L_12265001 RAL-502 405 chr2L 12272162 12272193 chr2L 12272258 12272289 4 94 10.5 10.0 10.2 0.4 127 chr2L 12272162 intron aret + chr2L 12272226 intron aret + chr2L 12272289 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-502 406 chr2L 12293550 12293590 chr2L 12293667 12293695 7 114 13.0 11.0 12.0 0.5 145 chr2L 12293550 intron aret + chr2L 12293622 intron aret + chr2L 12293695 intron aret + chr2L_7_12290001 chr2L_12290001 RAL-502 407 chr2L 12293967 12294250 chr2L 12294066 12294352 6 100 9.0 9.0 9.0 0.6 385 chr2L 12293967 intron aret + chr2L 12294160 intron aret + chr2L 12294352 intron aret + chr2L_6_12290001 chr2L_12290001 RAL-502 408 chr2L 12299592 12299640 chr2L 12299688 12299725 5 86 6.0 3.5 4.8 0.9 133 chr2L 12299592 intron aret + chr2L 12299658 intron aret + chr2L 12299725 intron aret + chr2L_5_12295001 chr2L_12295001 RAL-502 409 chr2L 12305392 12305438 chr2L 12305498 12305546 7 106 14.5 11.5 13.0 0.5 154 chr2L 12305392 intron aret + chr2L 12305469 intron aret + chr2L 12305546 intron aret + chr2L_7_12305001 chr2L_12305001 RAL-502 410 chr2L 12337264 12337289 chr2L 12337372 12337395 10 107 6.0 0.0 3.0 2.5 131 chr2L 12337264 intergenic not near genes chr2L 12337330 intergenic not near genes chr2L 12337395 intergenic not near genes chr2L_10_12335001 chr2L_12335001 RAL-502 411 chr2L 12371037 12371063 chr2L 12371142 12371168 7 105 9.0 4.0 6.5 0.9 131 chr2L 12371037 intron bru-2 + chr2L 12371102 intron bru-2 + chr2L 12371168 intron bru-2 + chr2L_7_12370001 chr2L_12370001 RAL-502 412 chr2L 12410997 12411037 chr2L 12411096 12411136 8 98 8.0 2.0 5.0 1.3 139 chr2L 12410997 intron vir-1 - chr2L 12411066 intron vir-1 - chr2L 12411136 intron vir-1 - chr2L_8_12410001 chr2L_12410001 RAL-502 413 chr2L 12424345 12424380 chr2L 12424441 12424476 6 96 4.5 1.5 3.0 1.5 131 chr2L 12424345 intergenic not near genes chr2L 12424410 intergenic CG6405 + chr2L 12424476 intergenic CG6405 + chr2L_6_12420001 chr2L_12420001 RAL-502 414 chr2L 12426134 12426160 chr2L 12426213 12426247 4 82 11.0 10.5 10.8 0.3 113 chr2L 12426134 exon CG6405 + chr2L 12426190 exon CG6405 + chr2L 12426247 exon CG6405 + chr2L_4_12425001 chr2L_12425001 RAL-502 415 chr2L 12480531 12480554 chr2L 12480628 12480648 7 96 8.0 3.5 5.8 1.0 117 chr2L 12480531 intron bun - chr2L 12480590 intron bun - chr2L 12480648 intron bun - chr2L_7_12480001 chr2L_12480001 RAL-502 416 chr2L 12487870 12487920 chr2L 12487967 12488021 17 98 3.5 5.5 4.5 3.1 151 chr2L 12487870 intron bun - chr2L 12487946 intron bun - chr2L 12488021 intron bun - chr2L_17_12485001 chr2L_12485001 RAL-502 417 chr2L 12491439 12491507 chr2L 12491591 12491610 4 139 10.5 12.0 11.2 0.3 171 chr2L 12491439 intron bun - chr2L 12491524 intron bun - chr2L 12491610 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-502 418 chr2L 12496129 12496174 chr2L 12499306 12499345 9 3176 20.0 26.5 23.2 0.4 3216 chr2L 12496129 intron bun - chr2L 12497737 intron bun - chr2L 12499345 intron bun - chr2L_9_12495001 chr2L_12495001 RAL-502 419 chr2L 12518519 12518565 chr2L 12518795 12518844 9 278 12.5 3.5 8.0 1.0 325 chr2L 12518519 intron bun - chr2L 12518682 intron bun - chr2L 12518844 intron bun - chr2L_9_12515001 chr2L_12515001 RAL-502 420 chr2L 12529232 12529422 chr2L 12529385 12529518 5 115 7.0 6.5 6.8 0.6 286 chr2L 12529232 intron bun - chr2L 12529375 intron bun - chr2L 12529518 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-502 421 chr2L 12558299 12558353 chr2L 12565447 12565496 HMS-Beagle 10 7146 3.0 2.0 2.5 2.9 7197 chr2L 12558299 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565496 intergenic not near genes chr2L_10_12560001 chr2L_12560001 RAL-502 422 chr2L 12570334 12570603 chr2L 12570435 12570708 4 106 3.5 0.0 1.8 1.4 374 chr2L 12570334 intergenic CR44598 - chr2L 12570521 intergenic CR44598 - chr2L 12570708 3` UTR CR44598 - chr2L_4_12570001 chr2L_12570001 RAL-502 423 chr2L 12583480 12583505 chr2L 12583592 12583617 4 112 8.0 2.5 5.2 0.6 137 chr2L 12583480 5` UTR CR44595 + chr2L 12583548 5` UTR CR44595 + chr2L 12583617 intergenic CR44595 + chr2L_4_12580001 chr2L_12580001 RAL-502 424 chr2L 12619890 12619906 chr2L 12619980 12620002 9 95 3.5 1.5 2.5 2.6 112 chr2L 12619890 intron,intron nub +,Ref2 - chr2L 12619946 intron,intron nub +,Ref2 - chr2L 12620002 intron,intron nub +,Ref2 - chr2L_9_12615001 chr2L_12615001 RAL-502 425 chr2L 12653012 12653062 chr2L 12653109 12653159 9 94 13.5 17.0 15.2 0.6 147 chr2L 12653012 intergenic not near genes chr2L 12653086 intergenic not near genes chr2L 12653159 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-502 426 chr2L 12728900 12728946 chr2L 12729161 12729206 pogo 11 261 7.5 2.5 5.0 1.8 306 chr2L 12728900 intron MRP + chr2L 12729053 intron MRP + chr2L 12729206 exon MRP + chr2L_11_12725001 chr2L_12725001 RAL-502 427 chr2L 12731039 12731084 chr2L 12735826 12735869 F-element 12 4784 2.5 6.5 4.5 2.2 4830 chr2L 12731039 intron MRP + chr2L 12733454 intron MRP + chr2L 12735869 intron MRP + chr2L_12_12730001 chr2L_12730001 RAL-502 428 chr2L 12739163 12739187 chr2L 12743957 12743988 Doc 16 4797 4.0 5.0 4.5 2.9 4825 chr2L 12739163 exon MRP + chr2L 12741576 intron MRP + chr2L 12743988 exon MRP + chr2L_16_12740001 chr2L_12740001 RAL-502 429 chr2L 12747062 12747103 chr2L 12747172 12747210 13 108 17.5 15.0 16.2 0.8 148 chr2L 12747062 intergenic not near genes chr2L 12747136 intergenic not near genes chr2L 12747210 intergenic not near genes chr2L_13_12745001 chr2L_12745001 RAL-502 430 chr2L 12751291 12751336 chr2L 12751391 12751439 11 96 13.0 10.0 11.5 0.9 148 chr2L 12751291 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751439 intergenic not near genes chr2L_11_12750001 chr2L_12750001 RAL-502 431 chr2L 12766740 12766778 chr2L 12766838 12766876 5 97 2.5 1.0 1.8 1.8 136 chr2L 12766740 intergenic not near genes chr2L 12766808 intergenic not near genes chr2L 12766876 intergenic not near genes chr2L_5_12765001 chr2L_12765001 RAL-502 432 chr2L 12781782 12781812 chr2L 12789245 12789275 Quasimodo 7 7465 9.0 4.5 6.8 0.9 7493 chr2L 12781782 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789275 intergenic not near genes chr2L_7_12785001 chr2L_12785001 RAL-502 433 chr2L 12791592 12791615 chr2L 12795286 12795310 F-element 5 3695 3.0 4.0 3.5 1.1 3718 chr2L 12791592 intergenic not near genes chr2L 12793451 intergenic not near genes chr2L 12795310 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-502 434 chr2L 12791626 12791636 chr2L 12795276 12795311 F-element 5 3677 2.0 3.5 2.8 1.3 3685 chr2L 12791626 intergenic not near genes chr2L 12793468 intergenic not near genes chr2L 12795311 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-502 435 chr2L 12861678 12861730 chr2L 12863165 12863183 hobo 13 1476 2.5 7.0 4.8 2.2 1505 chr2L 12861678 intergenic not near genes chr2L 12862430 intergenic not near genes chr2L 12863183 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-502 436 chr2L 12894029 12894053 chr2L 12895482 12895537 hobo 4 1474 6.0 7.0 6.5 0.5 1508 chr2L 12894029 intergenic not near genes chr2L 12894783 intergenic not near genes chr2L 12895537 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-502 437 chr2L 12933832 12933883 chr2L 12941319 12941370 blood 9 7486 7.0 9.0 8.0 1.0 7538 chr2L 12933832 intergenic not near genes chr2L 12937601 intergenic not near genes chr2L 12941370 intergenic not near genes chr2L_9_12935001 chr2L_12935001 RAL-502 438 chr2L 13036225 13036268 chr2L 13036487 13036530 X-element 11 260 5.0 4.5 4.8 1.9 305 chr2L 13036225 intron CG9932 - chr2L 13036378 intron CG9932 - chr2L 13036530 intron CG9932 - chr2L_11_13035001 chr2L_13035001 RAL-502 439 chr2L 13063362 13063401 chr2L 13063458 13063487 11 94 15.0 14.0 14.5 0.7 125 chr2L 13063362 intergenic not near genes chr2L 13063424 intergenic not near genes chr2L 13063487 intergenic not near genes chr2L_11_13060001 chr2L_13060001 RAL-502 440 chr2L 13109430 13109474 chr2L 13109578 13109622 7 148 7.5 7.0 7.2 0.9 192 chr2L 13109430 3` UTR CG5142 + chr2L 13109526 intergenic CG5142 + chr2L 13109622 intergenic CG5142 + chr2L_7_13105001 chr2L_13105001 RAL-502 441 chr2L 13147737 13147774 chr2L 13147831 13147869 11 95 12.5 14.0 13.2 0.8 132 chr2L 13147737 intergenic not near genes chr2L 13147803 intergenic not near genes chr2L 13147869 intergenic not near genes chr2L_11_13145001 chr2L_13145001 RAL-502 442 chr2L 13164863 13164906 chr2L 13164977 13165020 7 111 9.0 8.0 8.5 0.7 157 chr2L 13164863 exon DnaJ-H - chr2L 13164942 intron DnaJ-H - chr2L 13165020 intron DnaJ-H - chr2L_7_13160001 chr2L_13160001 RAL-502 443 chr2L 13231880 13231910 chr2L 13232011 13232041 8 130 16.0 17.0 16.5 0.5 161 chr2L 13231880 intergenic Prosalpha6T + chr2L 13231960 intergenic Prosalpha6T + chr2L 13232041 5` UTR Prosalpha6T + chr2L_8_13230001 chr2L_13230001 RAL-502 444 chr2L 13241943 13241949 chr2L 13244347 13244351 BS 6 2403 10.5 4.5 7.5 0.7 2408 chr2L 13241943 5` UTR CR45330 + chr2L 13243147 intron CR45330 + chr2L 13244351 5` UTR CR45330 + chr2L_6_13240001 chr2L_13240001 RAL-502 445 chr2L 13248110 13248141 chr2L 13248233 13248266 8 122 16.5 17.0 16.8 0.4 156 chr2L 13248110 intron CG16820 + chr2L 13248188 intron CG16820 + chr2L 13248266 intron CG16820 + chr2L_8_13245001 chr2L_13245001 RAL-502 446 chr2L 13398706 13398737 chr2L 13398803 13398837 4 96 5.0 7.0 6.0 0.6 131 chr2L 13398706 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398772 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398837 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_4_13395001 chr2L_13395001 RAL-502 447 chr2L 13405635 13405652 chr2L 13410446 13410469 Doc 5 4816 4.0 3.5 3.8 1.0 4834 chr2L 13405635 exon CG7110 + chr2L 13408052 intron CG7110 + chr2L 13410469 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-502 448 chr2L 13405653 13405678 chr2L 13410443 13410450 Doc 14 4809 1.5 3.5 2.5 4.0 4797 chr2L 13405653 exon CG7110 + chr2L 13408052 intron CG7110 + chr2L 13410450 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-502 449 chr2L 13446591 13446620 chr2L 13446704 13446710 5 102 10.5 17.0 13.8 0.3 119 chr2L 13446591 5` UTR CG42784 + chr2L 13446650 5` UTR CG42784 + chr2L 13446710 5` UTR CG42784 + chr2L_5_13445001 chr2L_13445001 RAL-502 450 chr2L 13449442 13449486 chr2L 13456898 13456941 Quasimodo 12 7455 2.5 3.5 3.0 3.0 7499 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453192 intron CG42784 + chr2L 13456941 intron CG42784 + chr2L_12_13450001 chr2L_13450001 RAL-502 451 chr2L 13469134 13469180 chr2L 13469232 13469277 6 94 9.5 7.5 8.5 0.6 143 chr2L 13469134 intron CG42784 + chr2L 13469206 intron CG42784 + chr2L 13469277 intron CG42784 + chr2L_6_13465001 chr2L_13465001 RAL-502 452 chr2L 13481448 13481473 chr2L 13482073 13482098 jockey 7 626 4.5 6.0 5.2 1.1 650 chr2L 13481448 intron CG42784 + chr2L 13481773 intron CG42784 + chr2L 13482098 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-502 453 chr2L 13546772 13546805 chr2L 13546859 13546893 7 94 11.0 11.5 11.2 0.6 121 chr2L 13546772 intron B4 - chr2L 13546832 intron B4 - chr2L 13546893 intron B4 - chr2L_7_13545001 chr2L_13545001 RAL-502 454 chr2L 13622124 13622235 chr2L 13622243 13622358 9 108 3.0 4.0 3.5 2.0 234 chr2L 13622124 intron kuz + chr2L 13622241 intron kuz + chr2L 13622358 intron kuz + chr2L_9_13620001 chr2L_13620001 RAL-502 455 chr2L 13676684 13676966 chr2L 13676781 13677077 10 103 10.5 8.5 9.5 1.0 393 chr2L 13676684 intergenic CG31814 - chr2L 13676880 3` UTR CG31814 - chr2L 13677077 3` UTR CG31814 - chr2L_10_13675001 chr2L_13675001 RAL-502 456 chr2L 13693485 13693517 chr2L 13693589 13693642 4 120 17.0 15.0 16.0 0.2 157 chr2L 13693485 intron CG31814 - chr2L 13693564 intron CG31814 - chr2L 13693642 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-502 457 chr2L 13713543 13713572 chr2L 13713638 13713668 5 96 2.5 1.0 1.8 1.8 125 chr2L 13713543 intron CG31814 - chr2L 13713606 intron CG31814 - chr2L 13713668 intron CG31814 - chr2L_5_13710001 chr2L_13710001 RAL-502 458 chr2L 13746724 13746760 chr2L 13746832 13746876 14 115 12.5 11.5 12.0 1.1 152 chr2L 13746724 intergenic CR44846 +,TM9SF4 + chr2L 13746800 intergenic CR44846 +,TM9SF4 + chr2L 13746876 intergenic CR44846 +,TM9SF4 + chr2L_14_13745001 chr2L_13745001 RAL-502 459 chr2L 13761283 13761317 chr2L 13761368 13761375 10 77 13.5 12.0 12.8 0.7 92 chr2L 13761283 intron TM9SF4 + chr2L 13761329 intron TM9SF4 + chr2L 13761375 intron TM9SF4 + chr2L_10_13760001 chr2L_13760001 RAL-502 460 chr2L 13761790 13761798 chr2L 13762921 13762927 Doc 4 1130 17.5 7.0 12.2 0.3 1137 chr2L 13761790 intron TM9SF4 + chr2L 13762358 intron TM9SF4 + chr2L 13762927 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-502 461 chr2L 13761812 13761834 chr2L 13762908 13762944 Doc 6 1114 10.5 6.0 8.2 0.7 1132 chr2L 13761812 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-502 462 chr2L 13800156 13800197 chr2L 13800280 13800321 12 124 2.5 6.5 4.5 2.2 165 chr2L 13800156 intergenic Sec71 + chr2L 13800238 intergenic not near genes chr2L 13800321 intergenic not near genes chr2L_12_13800001 chr2L_13800001 RAL-502 463 chr2L 13803807 13803840 chr2L 13806569 13806612 8 2771 26.5 13.0 19.8 0.4 2805 chr2L 13803807 5` UTR CAH1 + chr2L 13805210 intron CAH1 + chr2L 13806612 intron CAH1 + chr2L_8_13805001 chr2L_13805001 RAL-502 464 chr2L 13842115 13842153 chr2L 13842214 13842248 5 98 6.0 7.5 6.8 0.6 133 chr2L 13842115 intron CenG1A + chr2L 13842182 intron CenG1A + chr2L 13842248 intron CenG1A + chr2L_5_13840001 chr2L_13840001 RAL-502 465 chr2L 13853072 13853087 chr2L 13862242 13862245 roo 6 9166 7.0 4.0 5.5 0.9 9173 chr2L 13853072 intron CenG1A + chr2L 13857658 intron CenG1A + chr2L 13862245 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-502 466 chr2L 13853089 13853108 chr2L 13862236 13862278 roo 9 9162 4.5 3.5 4.0 1.8 9189 chr2L 13853089 intron CenG1A + chr2L 13857684 intron CenG1A + chr2L 13862278 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-502 467 chr2L 14017749 14017794 chr2L 14017861 14017906 8 111 10.0 16.0 13.0 0.6 157 chr2L 14017749 intron bgm + chr2L 14017828 intron bgm + chr2L 14017906 intron bgm + chr2L_8_14015001 chr2L_14015001 RAL-502 468 chr2L 14112736 14112763 chr2L 14112841 14112873 4 108 8.5 6.5 7.5 0.5 137 chr2L 14112736 intergenic not near genes chr2L 14112804 intergenic not near genes chr2L 14112873 intergenic not near genes chr2L_4_14110001 chr2L_14110001 RAL-502 469 chr2L 14118644 14118686 chr2L 14118763 14118785 14 116 11.0 12.0 11.5 1.1 141 chr2L 14118644 intergenic not near genes chr2L 14118714 intergenic not near genes chr2L 14118785 intergenic not near genes chr2L_14_14115001 chr2L_14115001 RAL-502 470 chr2L 14135212 14135255 chr2L 14135312 14135356 10 100 12.5 11.0 11.8 0.8 144 chr2L 14135212 intron CG17341 + chr2L 14135284 intron CG17341 + chr2L 14135356 intron CG17341 + chr2L_10_14135001 chr2L_14135001 RAL-502 471 chr2L 14229608 14229638 chr2L 14229721 14229746 11 109 11.0 9.0 10.0 1.0 138 chr2L 14229608 intron Dyrk2 - chr2L 14229677 intron Dyrk2 - chr2L 14229746 intron Dyrk2 - chr2L_11_14225001 chr2L_14225001 RAL-502 472 chr2L 14290793 14290823 chr2L 14290884 14290920 5 92 13.0 13.5 13.2 0.4 127 chr2L 14290793 intron wb + chr2L 14290856 intron wb + chr2L 14290920 intron wb + chr2L_5_14290001 chr2L_14290001 RAL-502 473 chr2L 14307877 14307907 chr2L 14307979 14308009 4 104 3.5 6.5 5.0 0.7 132 chr2L 14307877 intron wb + chr2L 14307943 intron wb + chr2L 14308009 intron wb + chr2L_4_14305001 chr2L_14305001 RAL-502 474 chr2L 14374765 14374776 chr2L 14374876 14374887 4 111 13.0 12.0 12.5 0.3 122 chr2L 14374765 intergenic not near genes chr2L 14374826 intergenic not near genes chr2L 14374887 intergenic not near genes chr2L_4_14370001 chr2L_14370001 RAL-502 475 chr2L 14391937 14391942 chr2L 14392013 14392039 4 86 1.0 5.5 3.2 1.0 102 chr2L 14391937 exon elB - chr2L 14391988 intron elB - chr2L 14392039 intron elB - chr2L_4_14390001 chr2L_14390001 RAL-502 476 chr2L 14414881 14414922 chr2L 14415403 14415443 11 521 7.0 12.0 9.5 1.0 562 chr2L 14414881 intergenic not near genes chr2L 14415162 intergenic not near genes chr2L 14415443 intergenic not near genes chr2L_11_14415001 chr2L_14415001 RAL-502 477 chr2L 14427497 14427544 chr2L 14427606 14427655 8 110 8.0 10.5 9.2 0.8 158 chr2L 14427497 intergenic not near genes chr2L 14427576 intergenic not near genes chr2L 14427655 intergenic not near genes chr2L_8_14425001 chr2L_14425001 RAL-502 478 chr2L 14429417 14429433 chr2L 14429518 14429527 4 99 3.5 8.0 5.8 0.6 110 chr2L 14429417 3` UTR CR44732 - chr2L 14429472 3` UTR CR44732 - chr2L 14429527 3` UTR CR44732 - chr2L_4_14425001 chr2L_14425001 RAL-502 479 chr2L 14429438 14429455 chr2L 14429516 14429556 5 96 3.0 8.0 5.5 0.8 118 chr2L 14429438 3` UTR CR44732 - chr2L 14429497 3` UTR CR44732 - chr2L 14429556 3` UTR CR44732 - chr2L_5_14425001 chr2L_14425001 RAL-502 480 chr2L 14486877 14486890 chr2L 14486977 14486990 4 100 6.0 2.5 4.2 0.8 113 chr2L 14486877 intergenic CR44731 + chr2L 14486934 intergenic CR44731 + chr2L 14486990 intergenic CR44731 + chr2L_4_14485001 chr2L_14485001 RAL-502 481 chr2L 14547099 14547143 chr2L 14547201 14547244 5 102 14.0 11.5 12.8 0.4 145 chr2L 14547099 intergenic CG4218 - chr2L 14547172 intergenic CG4218 - chr2L 14547244 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-502 482 chr2L 14588366 14588411 chr2L 14588540 14588571 7 171 16.0 11.5 13.8 0.5 205 chr2L 14588366 intergenic CG42680 - chr2L 14588468 intergenic CG42680 - chr2L 14588571 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-502 483 chr2L 14601958 14601999 chr2L 14602062 14602089 8 99 9.5 12.0 10.8 0.7 131 chr2L 14601958 exon osp - chr2L 14602024 intron osp - chr2L 14602089 intron osp - chr2L_8_14600001 chr2L_14600001 RAL-502 484 chr2L 14617877 14617919 chr2L 14617977 14617997 10 97 1.5 4.5 3.0 2.5 120 chr2L 14617877 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617937 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617997 intron,intron,intron osp -,Adh +,Adhr + chr2L_10_14615001 chr2L_14615001 RAL-502 485 chr2L 14707190 14707239 chr2L 14707326 14707376 19 136 8.0 1.5 4.8 3.3 186 chr2L 14707190 intergenic not near genes chr2L 14707283 intergenic not near genes chr2L 14707376 intergenic not near genes chr2L_19_14705001 chr2L_14705001 RAL-502 486 chr2L 14716599 14716628 chr2L 14716696 14716726 4 96 11.0 9.5 10.2 0.4 127 chr2L 14716599 intergenic not near genes chr2L 14716662 intergenic not near genes chr2L 14716726 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-502 487 chr2L 14758820 14758838 chr2L 14758893 14758938 5 89 12.5 11.0 11.8 0.4 118 chr2L 14758820 intergenic not near genes chr2L 14758879 intergenic not near genes chr2L 14758938 intergenic not near genes chr2L_5_14755001 chr2L_14755001 RAL-502 488 chr2L 14800623 14800646 chr2L 14800759 14800782 6 136 4.0 6.0 5.0 1.0 159 chr2L 14800623 intergenic not near genes chr2L 14800702 intergenic not near genes chr2L 14800782 intergenic not near genes chr2L_6_14800001 chr2L_14800001 RAL-502 489 chr2L 14803862 14803905 chr2L 14809081 14809127 copia 11 5219 8.5 5.0 6.8 1.4 5265 chr2L 14803862 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809127 intergenic not near genes chr2L_11_14805001 chr2L_14805001 RAL-502 490 chr2L 14840974 14841010 chr2L 14841080 14841117 10 105 8.0 8.5 8.2 1.1 143 chr2L 14840974 3` UTR CR43805 - chr2L 14841046 3` UTR CR43805 - chr2L 14841117 3` UTR CR43805 - chr2L_10_14840001 chr2L_14840001 RAL-502 491 chr2L 14854943 14854970 chr2L 14855039 14855063 4 95 16.5 17.5 17.0 0.2 120 chr2L 14854943 intergenic not near genes chr2L 14855003 intergenic not near genes chr2L 14855063 intergenic not near genes chr2L_4_14855001 chr2L_14855001 RAL-502 492 chr2L 14889938 14889982 chr2L 14890381 14890426 jockey 22 444 4.5 4.5 4.5 4.0 488 chr2L 14889938 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890426 intergenic not near genes chr2L_22_14890001 chr2L_14890001 RAL-502 493 chr2L 14923100 14923125 chr2L 14923188 14923225 6 96 16.5 12.5 14.5 0.4 125 chr2L 14923100 intron CG42313 - chr2L 14923162 intron CG42313 - chr2L 14923225 intron CG42313 - chr2L_6_14920001 chr2L_14920001 RAL-502 494 chr2L 14984361 14984398 chr2L 14991983 14992019 opus 11 7621 4.5 3.5 4.0 2.2 7658 chr2L 14984361 intron mol - chr2L 14988190 intron mol - chr2L 14992019 intron mol - chr2L_11_14985001 chr2L_14985001 RAL-502 495 chr2L 15000854 15000893 chr2L 15000960 15001008 7 110 16.0 14.5 15.2 0.4 154 chr2L 15000854 intergenic not near genes chr2L 15000931 intergenic not near genes chr2L 15001008 intergenic not near genes chr2L_7_15000001 chr2L_15000001 RAL-502 496 chr2L 15003527 15003567 chr2L 15003629 15003671 9 102 12.0 12.5 12.2 0.7 144 chr2L 15003527 intergenic not near genes chr2L 15003599 intergenic not near genes chr2L 15003671 intergenic not near genes chr2L_9_15000001 chr2L_15000001 RAL-502 497 chr2L 15013137 15013179 chr2L 15013261 15013308 6 125 10.0 9.0 9.5 0.6 171 chr2L 15013137 intergenic CR43856 - chr2L 15013222 intergenic not near genes chr2L 15013308 intergenic not near genes chr2L_6_15010001 chr2L_15010001 RAL-502 498 chr2L 15078048 15078099 chr2L 15078156 15078207 11 106 9.0 11.0 10.0 1.0 159 chr2L 15078048 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078207 intron CG15270 + chr2L_11_15075001 chr2L_15075001 RAL-502 499 chr2L 15098519 15098541 chr2L 15098618 15098641 6 98 6.0 3.0 4.5 1.1 122 chr2L 15098519 intergenic not near genes chr2L 15098580 intergenic not near genes chr2L 15098641 intergenic not near genes chr2L_6_15095001 chr2L_15095001 RAL-502 500 chr2L 15170616 15170635 chr2L 15170728 15170748 4 113 11.0 7.5 9.2 0.4 132 chr2L 15170616 intron CG4168 - chr2L 15170682 intron CG4168 - chr2L 15170748 intron CG4168 - chr2L_4_15170001 chr2L_15170001 RAL-502 501 chr2L 15174410 15174433 chr2L 15174897 15174923 6 489 10.0 8.0 9.0 0.6 513 chr2L 15174410 intron CG4168 - chr2L 15174666 intron CG4168 - chr2L 15174923 intron CG4168 - chr2L_6_15170001 chr2L_15170001 RAL-502 502 chr2L 15181778 15181813 chr2L 15181915 15181951 8 140 18.0 12.5 15.2 0.5 173 chr2L 15181778 intron CG4168 - chr2L 15181864 intron CG4168 - chr2L 15181951 intron CG4168 - chr2L_8_15180001 chr2L_15180001 RAL-502 503 chr2L 15291153 15291167 chr2L 15291267 15291274 4 113 0.0 0.0 0.0 4.0 121 chr2L 15291153 intergenic CG15260 - chr2L 15291214 intergenic CG15260 - chr2L 15291274 intergenic CG15260 - chr2L_4_15290001 chr2L_15290001 RAL-502 504 chr2L 15346025 15346070 chr2L 15346122 15346163 13 87 11.5 9.0 10.2 1.2 138 chr2L 15346025 intergenic not near genes chr2L 15346094 intergenic not near genes chr2L 15346163 intergenic not near genes chr2L_13_15345001 chr2L_15345001 RAL-502 505 chr2L 15365018 15365043 chr2L 15365201 15365226 4 183 9.5 10.0 9.8 0.4 208 chr2L 15365018 intergenic not near genes chr2L 15365122 intergenic not near genes chr2L 15365226 intergenic not near genes chr2L_4_15365001 chr2L_15365001 RAL-502 506 chr2L 15445651 15445672 chr2L 15445750 15445756 5 92 12.0 19.0 15.5 0.3 105 chr2L 15445651 intergenic not near genes chr2L 15445704 intergenic not near genes chr2L 15445756 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-502 507 chr2L 15446030 15446084 chr2L 15453518 15453563 blood 17 7488 7.5 1.5 4.5 3.1 7533 chr2L 15446030 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453563 intergenic not near genes chr2L_17_15445001 chr2L_15445001 RAL-502 508 chr2L 15483264 15483301 chr2L 15483369 15483407 5 106 2.5 2.5 2.5 1.4 143 chr2L 15483264 intergenic not near genes chr2L 15483336 intergenic not near genes chr2L 15483407 intergenic not near genes chr2L_5_15480001 chr2L_15480001 RAL-502 509 chr2L 15499894 15499938 chr2L 15500002 15500045 4 108 9.0 9.5 9.2 0.4 151 chr2L 15499894 intron lace + chr2L 15499970 intron lace + chr2L 15500045 intron lace + chr2L_4_15495001 chr2L_15495001 RAL-502 510 chr2L 15510915 15510965 chr2L 15511029 15511071 8 110 13.5 16.0 14.8 0.5 156 chr2L 15510915 intergenic not near genes chr2L 15510993 intergenic not near genes chr2L 15511071 intergenic not near genes chr2L_8_15510001 chr2L_15510001 RAL-502 511 chr2L 15544381 15544410 chr2L 15544461 15544478 9 75 17.5 15.0 16.2 0.5 97 chr2L 15544381 intergenic not near genes chr2L 15544430 intergenic not near genes chr2L 15544478 intergenic not near genes chr2L_9_15540001 chr2L_15540001 RAL-502 512 chr2L 15553361 15553384 chr2L 15553502 15553541 8 157 10.5 5.0 7.8 0.9 180 chr2L 15553361 intron kek3 + chr2L 15553451 intron kek3 + chr2L 15553541 intron kek3 + chr2L_8_15550001 chr2L_15550001 RAL-502 513 chr2L 15586395 15586438 chr2L 15593467 15593510 297 8 7072 3.0 4.5 3.8 1.7 7115 chr2L 15586395 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593510 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-502 514 chr2L 15624921 15624960 chr2L 15625037 15625076 7 111 13.5 10.0 11.8 0.5 155 chr2L 15624921 intergenic not near genes chr2L 15624998 intergenic not near genes chr2L 15625076 intergenic not near genes chr2L_7_15620001 chr2L_15620001 RAL-502 515 chr2L 15636659 15636695 chr2L 15636755 15636791 4 96 7.5 4.0 5.8 0.6 132 chr2L 15636659 intergenic not near genes chr2L 15636725 intergenic not near genes chr2L 15636791 intergenic not near genes chr2L_4_15635001 chr2L_15635001 RAL-502 516 chr2L 15732494 15732519 chr2L 15732609 15732634 7 114 5.5 1.5 3.5 1.6 140 chr2L 15732494 intron CycE - chr2L 15732564 intron CycE - chr2L 15732634 intron CycE - chr2L_7_15730001 chr2L_15730001 RAL-502 517 chr2L 15732527 15732537 chr2L 15732608 15732652 5 108 3.0 1.5 2.2 1.6 125 chr2L 15732527 intron CycE - chr2L 15732590 intron CycE - chr2L 15732652 intron CycE - chr2L_5_15730001 chr2L_15730001 RAL-502 518 chr2L 15776559 15776595 chr2L 15776977 15777013 7 418 35.5 25.5 30.5 0.2 454 chr2L 15776559 exon CG43760 - chr2L 15776786 5` UTR CG43760 - chr2L 15777013 intergenic CG43760 - chr2L_7_15775001 chr2L_15775001 RAL-502 519 chr2L 15790176 15790211 chr2L 15790262 15790331 5 120 11.0 11.5 11.2 0.4 155 chr2L 15790176 intergenic CG18109 + chr2L 15790254 intergenic CG18109 + chr2L 15790331 intergenic CG18109 + chr2L_5_15790001 chr2L_15790001 RAL-502 520 chr2L 15814021 15814050 chr2L 15814128 15814155 4 106 9.0 8.0 8.5 0.4 134 chr2L 15814021 intergenic not near genes chr2L 15814088 intergenic not near genes chr2L 15814155 intergenic not near genes chr2L_4_15810001 chr2L_15810001 RAL-502 521 chr2L 15826874 15826891 chr2L 15829288 15829304 Tabor 6 2413 5.0 6.5 5.8 0.9 2430 chr2L 15826874 intergenic not near genes chr2L 15828089 intergenic not near genes chr2L 15829304 intergenic not near genes chr2L_6_15825001 chr2L_15825001 RAL-502 522 chr2L 15843198 15843234 chr2L 15845890 15845928 5 2694 4.0 14.0 9.0 0.5 2730 chr2L 15843198 intergenic not near genes chr2L 15844563 intergenic not near genes chr2L 15845928 intergenic not near genes chr2L_5_15840001 chr2L_15840001 RAL-502 523 chr2L 15860974 15860992 chr2L 15862033 15862039 4 1066 9.0 7.0 8.0 0.4 1065 chr2L 15860974 intergenic not near genes chr2L 15861506 intergenic not near genes chr2L 15862039 intergenic not near genes chr2L_4_15860001 chr2L_15860001 RAL-502 524 chr2L 15906163 15906214 chr2L 15906271 15906323 19 105 2.5 4.5 3.5 4.2 160 chr2L 15906163 intron beat-Ib - chr2L 15906243 intron beat-Ib - chr2L 15906323 exon beat-Ib - chr2L_19_15905001 chr2L_15905001 RAL-502 525 chr2L 15934172 15934203 chr2L 15934419 15934450 6 247 5.0 11.5 8.2 0.7 278 chr2L 15934172 intron beat-Ib - chr2L 15934311 intron beat-Ib - chr2L 15934450 intron beat-Ib - chr2L_6_15930001 chr2L_15930001 RAL-502 526 chr2L 15950374 15950406 chr2L 15950472 15950498 4 93 11.0 10.5 10.8 0.3 124 chr2L 15950374 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950498 intron beat-Ib - chr2L_4_15950001 chr2L_15950001 RAL-502 527 chr2L 15956007 15956060 chr2L 15957493 15957519 hobo 13 1482 5.0 4.5 4.8 2.2 1512 chr2L 15956007 intron beat-Ib - chr2L 15956763 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_13_15955001 chr2L_15955001 RAL-502 528 chr2L 15984834 15984863 chr2L 15984940 15984961 9 102 17.0 17.0 17.0 0.5 127 chr2L 15984834 intergenic not near genes chr2L 15984898 intergenic not near genes chr2L 15984961 intergenic not near genes chr2L_9_15980001 chr2L_15980001 RAL-502 529 chr2L 15988017 15988065 chr2L 15988125 15988131 7 99 2.5 1.5 2.0 2.3 114 chr2L 15988017 intergenic not near genes chr2L 15988074 intergenic not near genes chr2L 15988131 intergenic not near genes chr2L_7_15985001 chr2L_15985001 RAL-502 530 chr2L 16001447 16001491 chr2L 16001552 16001586 11 105 0.0 2.0 1.0 5.5 139 chr2L 16001447 intron beat-Ic + chr2L 16001516 intron beat-Ic + chr2L 16001586 intron beat-Ic + chr2L_11_16000001 chr2L_16000001 RAL-502 531 chr2L 16043553 16043584 chr2L 16043657 16043688 7 104 0.5 3.0 1.8 2.5 135 chr2L 16043553 intron,intron BicC +,CG45084 + chr2L 16043620 intron,intron BicC +,CG45084 + chr2L 16043688 intron,intron BicC +,CG45084 + chr2L_7_16040001 chr2L_16040001 RAL-502 532 chr2L 16051588 16051615 chr2L 16051687 16051701 5 95 13.5 15.5 14.5 0.3 113 chr2L 16051588 intron beat-Ia + chr2L 16051644 intron beat-Ia + chr2L 16051701 intron beat-Ia + chr2L_5_16050001 chr2L_16050001 RAL-502 533 chr2L 8578452 8578452 chr2L 16071771 16071771 5 7493319 22.0 27.0 24.5 0.2 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_12325001 chr2L_12325001 RAL-502 534 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 26 145889 27.0 25.0 26.0 1.0 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_26_16140001 chr2L_16140001 RAL-502 535 chr2L 16081909 16081949 chr2L 16082025 16082043 5 103 12.5 11.5 12.0 0.4 134 chr2L 16081909 intergenic beat-Ia + chr2L 16081976 intergenic beat-Ia + chr2L 16082043 intergenic beat-Ia + chr2L_5_16080001 chr2L_16080001 RAL-502 536 chr2L 16098919 16098951 chr2L 16099026 16099059 8 106 10.5 15.0 12.8 0.6 140 chr2L 16098919 intergenic not near genes chr2L 16098989 intergenic not near genes chr2L 16099059 intergenic not near genes chr2L_8_16095001 chr2L_16095001 RAL-502 537 chr2L 16115508 16115544 chr2L 16115603 16115639 4 94 6.5 6.0 6.2 0.6 131 chr2L 16115508 intergenic not near genes chr2L 16115574 intergenic not near genes chr2L 16115639 intergenic not near genes chr2L_4_16115001 chr2L_16115001 RAL-502 538 chr2L 16123464 16123516 chr2L 16123565 16123614 6 100 7.0 7.5 7.2 0.7 150 chr2L 16123464 intergenic not near genes chr2L 16123539 intergenic not near genes chr2L 16123614 intergenic not near genes chr2L_6_16120001 chr2L_16120001 RAL-502 539 chr2L 16141149 16141183 chr2L 16146376 16146410 copia 8 5226 4.5 4.0 4.2 1.5 5261 chr2L 16141149 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146410 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-502 540 chr2L 16153716 16153768 chr2L 16160789 16160842 297 17 7072 4.0 5.0 4.5 3.1 7126 chr2L 16153716 intergenic not near genes chr2L 16157279 intergenic not near genes chr2L 16160842 intergenic not near genes chr2L_17_16155001 chr2L_16155001 RAL-502 541 chr2L 16207052 16207086 chr2L 16207149 16207183 4 97 12.0 13.5 12.8 0.3 131 chr2L 16207052 intergenic not near genes chr2L 16207118 intergenic not near genes chr2L 16207183 intergenic not near genes chr2L_4_16205001 chr2L_16205001 RAL-502 542 chr2L 16210486 16210511 chr2L 16210576 16210610 5 97 6.5 8.5 7.5 0.6 124 chr2L 16210486 intergenic not near genes chr2L 16210548 intergenic not near genes chr2L 16210610 intergenic not near genes chr2L_5_16210001 chr2L_16210001 RAL-502 543 chr2L 9084336 9084340 chr2L 16217660 16217660 6 7133322 16.0 25.0 20.5 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-502 544 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 21 145889 27.0 25.0 26.0 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_21_16140001 chr2L_16140001 RAL-502 545 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 26.5 16.5 21.5 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-502 546 chr2L 16243201 16243374 chr2L 16243298 16243471 11 97 10.0 10.5 10.2 1.0 270 chr2L 16243201 exon CG42818 + chr2L 16243336 exon CG42818 + chr2L 16243471 exon CG42818 + chr2L_11_16240001 chr2L_16240001 RAL-502 547 chr2L 16243678 16243858 chr2L 16243781 16243973 28 109 4.0 4.0 4.0 5.6 295 chr2L 16243678 exon CG42818 + chr2L 16243826 exon CG42818 + chr2L 16243973 exon CG42818 + chr2L_28_16240001 chr2L_16240001 RAL-502 548 chr2L 16254873 16254910 chr2L 16255152 16255189 14 283 5.0 5.5 5.2 2.3 316 chr2L 16254873 intron PRL-1 - chr2L 16255031 intron PRL-1 - chr2L 16255189 intron PRL-1 - chr2L_14_16255001 chr2L_16255001 RAL-502 549 chr2L 16280244 16280283 chr2L 16281426 16281471 1360 13 1183 4.5 6.5 5.5 2.0 1227 chr2L 16280244 intron crp - chr2L 16280858 intron crp - chr2L 16281471 intron crp - chr2L_13_16280001 chr2L_16280001 RAL-502 550 chr2L 16298706 16298744 chr2L 16298805 16298811 6 87 13.0 11.0 12.0 0.5 105 chr2L 16298706 intron heix - chr2L 16298758 intron heix - chr2L 16298811 intron heix - chr2L_6_16295001 chr2L_16295001 RAL-502 551 chr2L 16329511 16329552 chr2L 16329610 16329651 10 98 9.5 11.5 10.5 0.9 140 chr2L 16329511 intergenic mRpL4 -,CG4440 + chr2L 16329581 intergenic CG4440 +,mRpL4 - chr2L 16329651 intergenic CG4440 + chr2L_10_16325001 chr2L_16325001 RAL-502 552 chr2L 16363923 16363963 chr2L 16364188 16364229 6 266 0.0 0.0 0.0 6.0 306 chr2L 16363923 intergenic not near genes chr2L 16364076 intergenic not near genes chr2L 16364229 intergenic not near genes chr2L_6_16360001 chr2L_16360001 RAL-502 553 chr2L 16434093 16434117 chr2L 16434195 16434219 4 101 7.5 4.5 6.0 0.6 126 chr2L 16434093 intron CG5888 - chr2L 16434156 intron CG5888 - chr2L 16434219 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-502 554 chr2L 16504084 16504129 chr2L 16504336 16504382 10 252 11.0 2.5 6.8 1.3 298 chr2L 16504084 intron Tpr2 + chr2L 16504233 intron Tpr2 + chr2L 16504382 intron Tpr2 + chr2L_10_16500001 chr2L_16500001 RAL-502 555 chr2L 16511949 16511983 chr2L 16519083 16519117 HMS-Beagle 8 7154 1.5 1.5 1.5 3.2 7168 chr2L 16511949 intron CG5953 - chr2L 16515533 intron CG5953 - chr2L 16519117 intron CG5953 - chr2L_8_16515001 chr2L_16515001 RAL-502 556 chr2L 16537303 16537350 chr2L 16537399 16537442 7 95 9.5 11.0 10.2 0.6 139 chr2L 16537303 intergenic not near genes chr2L 16537372 intergenic not near genes chr2L 16537442 intergenic not near genes chr2L_7_16535001 chr2L_16535001 RAL-502 557 chr2L 16538872 16538910 chr2L 16538972 16538977 4 88 14.5 13.5 14.0 0.3 105 chr2L 16538872 intergenic not near genes chr2L 16538924 intergenic not near genes chr2L 16538977 intergenic not near genes chr2L_4_16535001 chr2L_16535001 RAL-502 558 chr2L 16550645 16550678 chr2L 16550739 16550774 12 95 16.0 15.0 15.5 0.7 129 chr2L 16550645 intron CG42389 + chr2L 16550710 intron CG42389 + chr2L 16550774 intron CG42389 + chr2L_12_16550001 chr2L_16550001 RAL-502 559 chr2L 16591985 16592015 chr2L 16592216 16592246 4 225 8.0 4.0 6.0 0.6 261 chr2L 16591985 intron CG42389 + chr2L 16592116 intron CG42389 + chr2L 16592246 intron CG42389 + chr2L_4_16590001 chr2L_16590001 RAL-502 560 chr2L 16654452 16654471 chr2L 16654589 16654597 5 133 14.0 15.5 14.8 0.3 145 chr2L 16654452 intron CG42389 + chr2L 16654524 intron CG42389 + chr2L 16654597 intron CG42389 + chr2L_5_16650001 chr2L_16650001 RAL-502 561 chr2L 16693895 16694160 chr2L 16693996 16694265 9 97 5.0 11.5 8.2 1.0 370 chr2L 16693895 intron grp + chr2L 16694080 intron grp + chr2L 16694265 intron grp + chr2L_9_16690001 chr2L_16690001 RAL-502 562 chr2L 16721423 16721464 chr2L 16721529 16721573 6 108 11.5 11.5 11.5 0.5 150 chr2L 16721423 intron Cyt-c-p + chr2L 16721498 intron Cyt-c-p + chr2L 16721573 intron Cyt-c-p + chr2L_6_16720001 chr2L_16720001 RAL-502 563 chr2L 16791222 16791242 chr2L 16791328 16791348 6 106 5.0 9.0 7.0 0.8 126 chr2L 16791222 intergenic CG17928 + chr2L 16791285 intergenic CG17928 + chr2L 16791348 intergenic CG17928 + chr2L_6_16790001 chr2L_16790001 RAL-502 564 chr2L 16796082 16796108 chr2L 16796203 16796227 5 121 1.5 7.5 4.5 0.9 145 chr2L 16796082 intergenic Ugt36Ba + chr2L 16796154 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796227 intergenic Ugt36Ba +,Ugt36Bb + chr2L_5_16795001 chr2L_16795001 RAL-502 565 chr2L 16818788 16818802 chr2L 16818870 16818911 5 105 15.0 17.5 16.2 0.3 123 chr2L 16818788 intron,intron CG13280 -,mdy + chr2L 16818850 intron,intron CG13280 -,mdy + chr2L 16818911 intron,intron CG13280 -,mdy + chr2L_5_16815001 chr2L_16815001 RAL-502 566 chr2L 16840991 16841032 chr2L 16841087 16841128 6 95 3.5 6.5 5.0 1.0 137 chr2L 16840991 intron,intron SclA +,SclB + chr2L 16841060 intron,intron SclA +,SclB + chr2L 16841128 intron,intron SclA +,SclB + chr2L_6_16840001 chr2L_16840001 RAL-502 567 chr2L 16867008 16867032 chr2L 16867123 16867146 9 115 0.5 5.5 3.0 2.2 138 chr2L 16867008 intergenic not near genes chr2L 16867077 intergenic not near genes chr2L 16867146 intergenic not near genes chr2L_9_16865001 chr2L_16865001 RAL-502 568 chr2L 16958089 16958130 chr2L 16962895 16962938 Doc 7 4805 2.0 3.5 2.8 1.8 4849 chr2L 16958089 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962938 intergenic not near genes chr2L_7_16960001 chr2L_16960001 RAL-502 569 chr2L 16969717 16969752 chr2L 16969815 16969860 9 102 13.5 14.0 13.8 0.6 143 chr2L 16969717 intergenic not near genes chr2L 16969788 intergenic not near genes chr2L 16969860 intergenic not near genes chr2L_9_16965001 chr2L_16965001 RAL-502 570 chr2L 16984450 16984479 chr2L 16984550 16984578 4 99 13.0 13.5 13.2 0.3 128 chr2L 16984450 intron beat-IIIb + chr2L 16984514 intron beat-IIIb + chr2L 16984578 intron beat-IIIb + chr2L_4_16980001 chr2L_16980001 RAL-502 571 chr2L 17032489 17032517 chr2L 17032594 17032614 4 103 7.0 8.0 7.5 0.5 125 chr2L 17032489 intergenic not near genes chr2L 17032552 intergenic not near genes chr2L 17032614 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-502 572 chr2L 17101889 17101914 chr2L 17101978 17102007 10 92 4.5 5.5 5.0 1.7 118 chr2L 17101889 intergenic not near genes chr2L 17101948 intergenic not near genes chr2L 17102007 intergenic not near genes chr2L_10_17100001 chr2L_17100001 RAL-502 573 chr2L 17102991 17103038 chr2L 17103098 17103146 5 103 6.5 10.0 8.2 0.5 155 chr2L 17102991 intergenic not near genes chr2L 17103068 intergenic not near genes chr2L 17103146 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-502 574 chr2L 17158726 17158757 chr2L 17158849 17158879 12 121 1.0 1.0 1.0 6.0 153 chr2L 17158726 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158802 intron,intron CG34106 +,beat-IIIa + chr2L 17158879 intron,intron CG34106 +,beat-IIIa + chr2L_12_17155001 chr2L_17155001 RAL-502 575 chr2L 17163588 17163633 chr2L 17163695 17163742 12 107 2.0 4.0 3.0 3.0 154 chr2L 17163588 intron,intron CG34106 +,beat-IIIa + chr2L 17163665 intron,intron CG34106 +,beat-IIIa + chr2L 17163742 intron,intron CG34106 +,beat-IIIa + chr2L_12_17160001 chr2L_17160001 RAL-502 576 chr2L 17167547 17167592 chr2L 17167808 17167852 pogo 11 259 4.5 3.0 3.8 2.3 305 chr2L 17167547 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167852 intron,intron CG34106 +,beat-IIIa + chr2L_11_17165001 chr2L_17165001 RAL-502 577 chr2L 17187424 17187469 chr2L 17187615 17187623 6 185 6.0 5.5 5.8 0.9 199 chr2L 17187424 intergenic beat-IIIc - chr2L 17187524 intergenic beat-IIIc - chr2L 17187623 intergenic beat-IIIc - chr2L_6_17185001 chr2L_17185001 RAL-502 578 chr2L 17199145 17199184 chr2L 17200632 17200671 hobo 6 1487 8.5 2.0 5.2 1.0 1526 chr2L 17199145 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200671 intron beat-IIIc - chr2L_6_17195001 chr2L_17195001 RAL-502 579 chr2L 17234393 17234546 chr2L 17234516 17234698 7 140 7.5 10.0 8.8 0.7 305 chr2L 17234393 intron beat-IIIc - chr2L 17234546 intron beat-IIIc - chr2L 17234698 intron beat-IIIc - chr2L_7_17230001 chr2L_17230001 RAL-502 580 chr2L 17239190 17239200 chr2L 17239291 17239300 4 102 12.5 11.0 11.8 0.3 110 chr2L 17239190 intron beat-IIIc - chr2L 17239245 intron beat-IIIc - chr2L 17239300 intron beat-IIIc - chr2L_4_17235001 chr2L_17235001 RAL-502 581 chr2L 17264726 17264777 chr2L 17264826 17264877 6 100 3.0 2.0 2.5 1.7 151 chr2L 17264726 intergenic not near genes chr2L 17264802 intergenic not near genes chr2L 17264877 intergenic not near genes chr2L_6_17260001 chr2L_17260001 RAL-502 582 chr2L 17273192 17273222 chr2L 17277971 17278025 F-element 11 4794 5.0 2.0 3.5 2.4 4833 chr2L 17273192 intergenic not near genes chr2L 17275608 intergenic not near genes chr2L 17278025 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-502 583 chr2L 17289233 17289254 chr2L 17289330 17289340 5 93 9.5 1.5 5.5 0.8 107 chr2L 17289233 intergenic not near genes chr2L 17289286 intergenic not near genes chr2L 17289340 intergenic not near genes chr2L_5_17285001 chr2L_17285001 RAL-502 584 chr2L 17327899 17327928 chr2L 17328002 17328033 12 104 10.0 6.5 8.2 1.3 134 chr2L 17327899 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328033 intergenic not near genes chr2L_12_17325001 chr2L_17325001 RAL-502 585 chr2L 17329053 17329094 chr2L 17329201 17329242 4 148 13.0 10.5 11.8 0.3 189 chr2L 17329053 intergenic not near genes chr2L 17329148 intergenic not near genes chr2L 17329242 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-502 586 chr2L 17335539 17335574 chr2L 17336725 17336760 1360 4 1186 1.5 10.0 5.8 0.6 1221 chr2L 17335539 intergenic not near genes chr2L 17336150 intergenic not near genes chr2L 17336760 intergenic not near genes chr2L_4_17335001 chr2L_17335001 RAL-502 587 chr2L 17348982 17349033 chr2L 17349095 17349109 8 108 11.0 13.5 12.2 0.6 127 chr2L 17348982 intergenic not near genes chr2L 17349046 intergenic not near genes chr2L 17349109 intergenic not near genes chr2L_8_17345001 chr2L_17345001 RAL-502 588 chr2L 17386003 17386036 chr2L 17386103 17386137 13 100 3.5 6.5 5.0 2.2 134 chr2L 17386003 intron CLIP-190 + chr2L 17386070 intron CLIP-190 + chr2L 17386137 intron CLIP-190 + chr2L_13_17385001 chr2L_17385001 RAL-502 589 chr2L 17432611 17432668 chr2L 17432708 17432725 6 88 14.5 15.5 15.0 0.4 114 chr2L 17432611 intron Dif - chr2L 17432668 intron Dif - chr2L 17432725 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-502 590 chr2L 17466418 17466446 chr2L 17466531 17466558 9 111 6.0 11.0 8.5 0.9 140 chr2L 17466418 intron BicD - chr2L 17466488 intron BicD - chr2L 17466558 intron BicD - chr2L_9_17465001 chr2L_17465001 RAL-502 591 chr2L 17503201 17503247 chr2L 17503297 17503340 10 96 20.0 16.0 18.0 0.5 139 chr2L 17503201 intron Dhc36C + chr2L 17503270 intron Dhc36C + chr2L 17503340 intron Dhc36C + chr2L_10_17500001 chr2L_17500001 RAL-502 592 chr2L 17543582 17543624 chr2L 17543694 17543735 9 112 11.5 11.5 11.5 0.7 153 chr2L 17543582 intergenic not near genes chr2L 17543658 intergenic not near genes chr2L 17543735 intergenic not near genes chr2L_9_17540001 chr2L_17540001 RAL-502 593 chr2L 17577717 17577736 chr2L 17577813 17577832 4 96 4.5 8.0 6.2 0.6 115 chr2L 17577717 intergenic not near genes chr2L 17577774 intergenic not near genes chr2L 17577832 intergenic not near genes chr2L_4_17575001 chr2L_17575001 RAL-502 594 chr2L 17637093 17637128 chr2L 17637189 17637225 5 97 7.5 10.5 9.0 0.5 132 chr2L 17637093 intergenic not near genes chr2L 17637159 intergenic not near genes chr2L 17637225 intergenic not near genes chr2L_5_17635001 chr2L_17635001 RAL-502 595 chr2L 17681244 17681267 chr2L 17681812 17681839 5 584 19.5 12.5 16.0 0.3 595 chr2L 17681244 intron CadN - chr2L 17681542 intron CadN - chr2L 17681839 intron CadN - chr2L_5_17680001 chr2L_17680001 RAL-502 596 chr2L 17687508 17687522 chr2L 17692264 17692286 F-element 5 4763 3.5 3.5 3.5 1.1 4778 chr2L 17687508 intron CadN - chr2L 17689897 intron CadN - chr2L 17692286 intron CadN - chr2L_5_17685001 chr2L_17685001 RAL-502 597 chr2L 17727858 17727876 chr2L 17729344 17729363 hobo 5 1487 4.5 9.5 7.0 0.6 1505 chr2L 17727858 intron CadN - chr2L 17728610 intron CadN - chr2L 17729363 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-502 598 chr2L 17734875 17734910 chr2L 17734980 17735014 6 103 5.5 7.0 6.2 0.8 139 chr2L 17734875 intron CadN - chr2L 17734944 intron CadN - chr2L 17735014 intron CadN - chr2L_6_17730001 chr2L_17730001 RAL-502 599 chr2L 17819908 17819951 chr2L 17825131 17825168 copia 9 5222 1.5 4.0 2.8 2.4 5260 chr2L 17819908 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825168 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-502 600 chr2L 17855481 17855512 chr2L 17855579 17855610 5 98 11.5 9.0 10.2 0.4 129 chr2L 17855481 intron CadN2 - chr2L 17855546 intron CadN2 - chr2L 17855610 intron CadN2 - chr2L_5_17855001 chr2L_17855001 RAL-502 601 chr2L 17879981 17880030 chr2L 17880088 17880136 6 105 9.5 15.0 12.2 0.5 155 chr2L 17879981 intergenic not near genes chr2L 17880058 intergenic not near genes chr2L 17880136 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-502 602 chr2L 17893499 17893520 chr2L 17893799 17893819 4 300 8.5 8.0 8.2 0.4 320 chr2L 17893499 intergenic CR43420 + chr2L 17893659 intergenic CR43420 + chr2L 17893819 5` UTR CR43420 + chr2L_4_17890001 chr2L_17890001 RAL-502 603 chr2L 17911941 17911984 chr2L 17914139 17914182 pogo 8 2195 4.5 6.0 5.2 1.3 2241 chr2L 17911941 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914182 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 RAL-502 604 chr2L 17951923 17951979 chr2L 17953410 17953466 hobo 22 1485 3.5 4.0 3.8 4.6 1543 chr2L 17951923 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953466 intergenic not near genes chr2L_22_17950001 chr2L_17950001 RAL-502 605 chr2L 17989978 17990026 chr2L 17990073 17990113 5 91 10.5 10.0 10.2 0.4 135 chr2L 17989978 intergenic Prosbeta5R2 + chr2L 17990046 intergenic Prosbeta5R2 + chr2L 17990113 intergenic Prosbeta5R2 + chr2L_5_17990001 chr2L_17990001 RAL-502 606 chr2L 18020730 18020772 chr2L 18020837 18020843 6 98 8.5 10.5 9.5 0.6 113 chr2L 18020730 intron rdo + chr2L 18020786 intron rdo + chr2L 18020843 intron rdo + chr2L_6_18020001 chr2L_18020001 RAL-502 607 chr2L 18026972 18026998 chr2L 18027332 18027357 6 358 16.0 11.5 13.8 0.4 385 chr2L 18026972 5` UTR rdo + chr2L 18027164 intron rdo + chr2L 18027357 intron rdo + chr2L_6_18025001 chr2L_18025001 RAL-502 608 chr2L 18051874 18051898 chr2L 18061027 18061062 roo 6 9164 9.5 5.0 7.2 0.7 9188 chr2L 18051874 intron rdo + chr2L 18056468 intron rdo + chr2L 18061062 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-502 609 chr2L 18073404 18073451 chr2L 18073538 18073585 9 128 14.5 19.0 16.8 0.5 181 chr2L 18073404 intergenic not near genes chr2L 18073494 intergenic not near genes chr2L 18073585 intergenic not near genes chr2L_9_18070001 chr2L_18070001 RAL-502 610 chr2L 18111222 18111244 chr2L 18111332 18111354 4 110 7.5 2.5 5.0 0.7 132 chr2L 18111222 intergenic not near genes chr2L 18111288 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-502 611 chr2L 18196215 18196255 chr2L 18196393 18196403 4 170 15.5 17.0 16.2 0.2 188 chr2L 18196215 intron CG42750 - chr2L 18196309 intron CG42750 - chr2L 18196403 intron CG42750 - chr2L_4_18195001 chr2L_18195001 RAL-502 612 chr2L 18255466 18255512 chr2L 18255570 18255617 6 102 15.5 13.5 14.5 0.4 151 chr2L 18255466 intron CG42750 - chr2L 18255542 intron CG42750 - chr2L 18255617 intron CG42750 - chr2L_6_18255001 chr2L_18255001 RAL-502 613 chr2L 18264041 18264093 chr2L 18264138 18264190 6 97 4.5 6.0 5.2 1.0 149 chr2L 18264041 intron CG42750 - chr2L 18264116 intron CG42750 - chr2L 18264190 intron CG42750 - chr2L_6_18260001 chr2L_18260001 RAL-502 614 chr2L 18274023 18274068 chr2L 18274126 18274174 10 105 9.5 8.0 8.8 1.0 151 chr2L 18274023 intron CG42750 - chr2L 18274098 intron CG42750 - chr2L 18274174 intron CG42750 - chr2L_10_18270001 chr2L_18270001 RAL-502 615 chr2L 18289297 18289334 chr2L 18289396 18289430 4 93 16.0 13.5 14.8 0.3 133 chr2L 18289297 intergenic not near genes chr2L 18289364 intergenic not near genes chr2L 18289430 intergenic not near genes chr2L_4_18285001 chr2L_18285001 RAL-502 616 chr2L 18303952 18303996 chr2L 18304063 18304106 7 109 11.0 11.5 11.2 0.6 154 chr2L 18303952 intergenic not near genes chr2L 18304029 intergenic not near genes chr2L 18304106 intergenic not near genes chr2L_7_18300001 chr2L_18300001 RAL-502 617 chr2L 18305603 18305650 chr2L 18305709 18305749 8 105 11.0 16.0 13.5 0.6 146 chr2L 18305603 intergenic not near genes chr2L 18305676 intergenic not near genes chr2L 18305749 intergenic not near genes chr2L_8_18305001 chr2L_18305001 RAL-502 618 chr2L 16217660 16217660 chr2L 18331928 18331928 F-element 4 2114268 26.5 9.0 17.8 0.2 2114268 chr2L 16217660 intergenic not near genes chr2L 17274794 intergenic not near genes chr2L 18331928 intron Fas3 + chr2L_4_17270001 chr2L_17270001 RAL-502 619 chr2L 18334613 18334643 chr2L 18334700 18334747 7 96 13.5 13.0 13.2 0.5 134 chr2L 18334613 intron Fas3 + chr2L 18334680 intron Fas3 + chr2L 18334747 intron Fas3 + chr2L_7_18330001 chr2L_18330001 RAL-502 620 chr2L 18380199 18380238 chr2L 18380302 18380344 12 101 13.5 17.5 15.5 0.7 145 chr2L 18380199 intron Fas3 + chr2L 18380272 intron Fas3 + chr2L 18380344 intron Fas3 + chr2L_12_18380001 chr2L_18380001 RAL-502 621 chr2L 18408012 18408034 chr2L 18412816 18412838 Doc 8 4804 8.5 0.0 4.2 1.5 4826 chr2L 18408012 intergenic not near genes chr2L 18410425 intergenic not near genes chr2L 18412838 intergenic not near genes chr2L_8_18410001 chr2L_18410001 RAL-502 622 chr2L 18442344 18442375 chr2L 18442423 18442469 6 90 11.5 13.5 12.5 0.4 125 chr2L 18442344 3` UTR RpS26 - chr2L 18442406 3` UTR RpS26 - chr2L 18442469 3` UTR RpS26 - chr2L_6_18440001 chr2L_18440001 RAL-502 623 chr2L 18537898 18537942 chr2L 18537998 18538040 8 94 12.0 14.0 13.0 0.6 142 chr2L 18537898 intron Pde11 - chr2L 18537969 intron Pde11 - chr2L 18538040 exon Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-502 624 chr2L 18659924 18659959 chr2L 18660027 18660063 6 104 8.5 13.0 10.8 0.5 139 chr2L 18659924 intron MESR3 + chr2L 18659994 intron MESR3 + chr2L 18660063 intron MESR3 + chr2L_6_18655001 chr2L_18655001 RAL-502 625 chr2L 18664558 18664612 chr2L 18664654 18664694 9 94 13.0 16.5 14.8 0.6 136 chr2L 18664558 intergenic not near genes chr2L 18664626 intergenic not near genes chr2L 18664694 intergenic not near genes chr2L_9_18660001 chr2L_18660001 RAL-502 626 chr2L 18812546 18812589 chr2L 18812829 18812849 7 278 3.5 11.5 7.5 0.8 303 chr2L 18812546 intergenic CG17325 +,CG42305 + chr2L 18812698 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812849 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_7_18810001 chr2L_18810001 RAL-502 627 chr2L 18816725 18816739 chr2L 18816877 18816890 4 150 18.5 24.0 21.2 0.2 165 chr2L 18816725 intergenic not near genes chr2L 18816808 intergenic not near genes chr2L 18816890 intergenic not near genes chr2L_4_18815001 chr2L_18815001 RAL-502 628 chr2L 18816741 18816768 chr2L 18816876 18816913 7 144 18.0 24.0 21.0 0.3 172 chr2L 18816741 intergenic not near genes chr2L 18816827 intergenic not near genes chr2L 18816913 intergenic not near genes chr2L_7_18815001 chr2L_18815001 RAL-502 629 chr2L 18883834 18883872 chr2L 18883936 18883972 6 101 16.5 15.5 16.0 0.4 138 chr2L 18883834 intergenic not near genes chr2L 18883903 intergenic not near genes chr2L 18883972 intergenic not near genes chr2L_6_18880001 chr2L_18880001 RAL-502 630 chr2L 18898390 18898428 chr2L 18898483 18898524 6 96 10.0 7.5 8.8 0.6 134 chr2L 18898390 intergenic not near genes chr2L 18898457 intergenic not near genes chr2L 18898524 intergenic not near genes chr2L_6_18895001 chr2L_18895001 RAL-502 631 chr2L 18902623 18902654 chr2L 18902923 18902955 4 300 9.0 3.5 6.2 0.6 332 chr2L 18902623 intergenic not near genes chr2L 18902789 intergenic not near genes chr2L 18902955 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-502 632 chr2L 18903094 18903126 chr2L 18903210 18903227 10 112 9.0 13.0 11.0 0.8 133 chr2L 18903094 intergenic not near genes chr2L 18903160 intergenic not near genes chr2L 18903227 intergenic not near genes chr2L_10_18900001 chr2L_18900001 RAL-502 633 chr2L 18926568 18926591 chr2L 18926694 18926718 4 125 1.0 0.0 0.5 2.7 150 chr2L 18926568 intron ssp3 - chr2L 18926643 intron ssp3 - chr2L 18926718 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-502 634 chr2L 19016237 19016272 chr2L 19016353 19016388 5 115 10.5 5.5 8.0 0.6 151 chr2L 19016237 intergenic not near genes chr2L 19016312 intergenic not near genes chr2L 19016388 intergenic not near genes chr2L_5_19015001 chr2L_19015001 RAL-502 635 chr2L 19121881 19121901 chr2L 19121998 19122018 4 116 5.0 7.0 6.0 0.6 137 chr2L 19121881 3` UTR l(2)37Cc - chr2L 19121950 3` UTR l(2)37Cc - chr2L 19122018 3` UTR l(2)37Cc - chr2L_4_19120001 chr2L_19120001 RAL-502 636 chr2L 19122772 19122801 chr2L 19122852 19122900 6 95 12.0 12.0 12.0 0.5 128 chr2L 19122772 exon l(2)37Cc - chr2L 19122836 intron l(2)37Cc - chr2L 19122900 intron l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-502 637 chr2L 19147353 19147397 chr2L 19154408 19154436 297 15 7050 6.5 6.0 6.2 2.1 7083 chr2L 19147353 intron brat + chr2L 19150894 intron brat + chr2L 19154436 intron brat + chr2L_15_19150001 chr2L_19150001 RAL-502 638 chr2L 19163528 19163557 chr2L 19163623 19163627 4 93 13.5 15.5 14.5 0.3 99 chr2L 19163528 intron brat + chr2L 19163578 intron brat + chr2L 19163627 intron brat + chr2L_4_19160001 chr2L_19160001 RAL-502 639 chr2L 19198515 19198536 chr2L 19198612 19198629 5 95 15.0 11.0 13.0 0.4 114 chr2L 19198515 intron drl + chr2L 19198572 intron drl + chr2L 19198629 intron drl + chr2L_5_19195001 chr2L_19195001 RAL-502 640 chr2L 19198539 19198562 chr2L 19198611 19198652 5 83 10.5 11.0 10.8 0.4 113 chr2L 19198539 intron drl + chr2L 19198596 intron drl + chr2L 19198652 intron drl + chr2L_5_19195001 chr2L_19195001 RAL-502 641 chr2L 19237286 19237313 chr2L 19237406 19237433 4 119 10.0 4.5 7.2 0.5 147 chr2L 19237286 intergenic not near genes chr2L 19237360 intergenic not near genes chr2L 19237433 intergenic not near genes chr2L_4_19235001 chr2L_19235001 RAL-502 642 chr2L 19242659 19242669 chr2L 19243116 19243128 4 458 11.0 16.5 13.8 0.3 469 chr2L 19242659 intergenic not near genes chr2L 19242894 intergenic not near genes chr2L 19243128 intergenic not near genes chr2L_4_19240001 chr2L_19240001 RAL-502 643 chr2L 19246807 19246852 chr2L 19246906 19246949 17 97 4.0 2.0 3.0 4.2 142 chr2L 19246807 intergenic not near genes chr2L 19246878 intergenic not near genes chr2L 19246949 intergenic not near genes chr2L_17_19245001 chr2L_19245001 RAL-502 644 chr2L 19256038 19256080 chr2L 19256241 19256283 14 205 30.5 12.0 21.2 0.6 245 chr2L 19256038 intergenic not near genes chr2L 19256160 intergenic not near genes chr2L 19256283 intergenic not near genes chr2L_14_19255001 chr2L_19255001 RAL-502 645 chr2L 19290969 19290979 chr2L 19291078 19291120 4 130 6.0 7.5 6.8 0.5 151 chr2L 19290969 intergenic not near genes chr2L 19291044 intergenic not near genes chr2L 19291120 intergenic not near genes chr2L_4_19290001 chr2L_19290001 RAL-502 646 chr2L 16217660 16217660 chr2L 19313782 19313782 4 3096122 26.5 21.0 23.8 0.2 3096122 chr2L 16217660 intergenic not near genes chr2L 17765721 intron CadN - chr2L 19313782 intergenic not near genes chr2L_4_17765001 chr2L_17765001 RAL-502 647 chr2L 19338000 19338033 chr2L 19338094 19338114 6 86 9.5 10.0 9.8 0.6 114 chr2L 19338000 intergenic not near genes chr2L 19338057 intergenic not near genes chr2L 19338114 intergenic not near genes chr2L_6_19335001 chr2L_19335001 RAL-502 648 chr2L 19345006 19345041 chr2L 19357235 19357270 blood 7 12227 5.5 5.5 5.5 1.1 12264 chr2L 19345006 intron dnt - chr2L 19351138 intron dnt - chr2L 19357270 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-502 649 chr2L 19357526 19357568 chr2L 19357636 19357678 20 108 5.5 6.5 6.0 2.9 152 chr2L 19357526 intron dnt - chr2L 19357602 intron dnt - chr2L 19357678 intron dnt - chr2L_20_19355001 chr2L_19355001 RAL-502 650 chr2L 19372708 19372737 chr2L 19372810 19372839 5 102 10.0 12.0 11.0 0.4 131 chr2L 19372708 3` UTR CG17349 + chr2L 19372774 intergenic CG17349 + chr2L 19372839 intergenic CG17349 + chr2L_5_19370001 chr2L_19370001 RAL-502 651 chr2L 19380491 19380525 chr2L 19380591 19380625 4 100 13.5 15.5 14.5 0.3 134 chr2L 19380491 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380625 intergenic CG17350 + chr2L_4_19380001 chr2L_19380001 RAL-502 652 chr2L 19405600 19405640 chr2L 19405710 19405742 8 107 2.0 0.5 1.2 3.6 142 chr2L 19405600 intron Pax - chr2L 19405671 intron Pax - chr2L 19405742 intron Pax - chr2L_8_19405001 chr2L_19405001 RAL-502 653 chr2L 19441046 19441086 chr2L 19441143 19441158 15 94 6.5 5.5 6.0 2.1 112 chr2L 19441046 intron CG10237 - chr2L 19441102 intron CG10237 - chr2L 19441158 5` UTR CG10237 - chr2L_15_19440001 chr2L_19440001 RAL-502 654 chr2L 19520164 19520189 chr2L 19520263 19520288 6 98 8.0 8.5 8.2 0.7 124 chr2L 19520164 intron CG10132 + chr2L 19520226 intron CG10132 + chr2L 19520288 intron CG10132 + chr2L_6_19520001 chr2L_19520001 RAL-502 655 chr2L 19543106 19543149 chr2L 19543210 19543253 16 101 20.5 12.5 16.5 0.9 147 chr2L 19543106 intron ref(2)P + chr2L 19543180 intron ref(2)P + chr2L 19543253 intron ref(2)P + chr2L_16_19540001 chr2L_19540001 RAL-502 656 chr2L 19558518 19558548 chr2L 19558621 19558672 9 117 7.0 11.0 9.0 0.9 154 chr2L 19558518 intron Tep5 + chr2L 19558595 intron Tep5 + chr2L 19558672 intron Tep5 + chr2L_9_19555001 chr2L_19555001 RAL-502 657 chr2L 19559172 19559213 chr2L 19559271 19559312 7 105 16.5 17.0 16.8 0.4 140 chr2L 19559172 exon Tep5 + chr2L 19559242 exon Tep5 + chr2L 19559312 exon Tep5 + chr2L_7_19555001 chr2L_19555001 RAL-502 658 chr2L 19559997 19560033 chr2L 19560270 19560305 5 271 15.5 17.0 16.2 0.3 308 chr2L 19559997 exon Tep5 + chr2L 19560151 exon Tep5 + chr2L 19560305 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-502 659 chr2L 19560828 19560852 chr2L 19560926 19560938 10 98 12.0 11.0 11.5 0.8 110 chr2L 19560828 intron Tep5 + chr2L 19560883 intron Tep5 + chr2L 19560938 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-502 660 chr2L 19562512 19562562 chr2L 19562612 19562662 13 97 4.0 4.0 4.0 2.6 150 chr2L 19562512 exon Tep5 + chr2L 19562587 intron Tep5 + chr2L 19562662 exon Tep5 + chr2L_13_19560001 chr2L_19560001 RAL-502 661 chr2L 19612959 19612988 chr2L 19613054 19613098 14 102 8.5 7.0 7.8 1.6 139 chr2L 19612959 intron Lar + chr2L 19613028 intron Lar + chr2L 19613098 intron Lar + chr2L_14_19610001 chr2L_19610001 RAL-502 662 chr2L 19620078 19620087 chr2L 19621084 19621093 jockey 4 1005 13.5 1.5 7.5 0.5 1015 chr2L 19620078 intron Lar + chr2L 19620586 intron Lar + chr2L 19621093 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-502 663 chr2L 19620098 19620132 chr2L 19621083 19621130 jockey 14 996 3.5 1.5 2.5 4.0 1032 chr2L 19620098 intron Lar + chr2L 19620614 intron Lar + chr2L 19621130 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-502 664 chr2L 19652550 19652567 chr2L 19674006 19674023 opus 5 21456 10.5 4.0 7.2 0.6 21473 chr2L 19652550 intron Lar + chr2L 19663286 intron Lar + chr2L 19674023 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-502 665 chr2L 19652568 19652586 chr2L 19674004 19674041 opus 7 21453 5.5 3.5 4.5 1.3 21473 chr2L 19652568 intron Lar + chr2L 19663304 intron Lar + chr2L 19674041 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-502 666 chr2L 19703520 19703566 chr2L 19712676 19712720 roo 19 9152 6.0 1.5 3.8 4.0 9200 chr2L 19703520 intron Lar + chr2L 19708120 intron Lar + chr2L 19712720 intron Lar + chr2L_19_19705001 chr2L_19705001 RAL-502 667 chr2L 19712712 19712718 chr2L 19712770 19712786 4 69 3.5 5.5 4.5 0.7 74 chr2L 19712712 intron Lar + chr2L 19712749 intron Lar + chr2L 19712786 intron Lar + chr2L_4_19710001 chr2L_19710001 RAL-502 668 chr2L 19737352 19737381 chr2L 19740823 19740829 1360 8 3465 6.5 5.5 6.0 1.1 3477 chr2L 19737352 intergenic Nf-YB + chr2L 19739090 intergenic not near genes chr2L 19740829 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-502 669 chr2L 19762787 19762836 chr2L 19763049 19763098 pogo 13 258 3.5 1.5 2.5 3.7 311 chr2L 19762787 exon fbp - chr2L 19762942 intron fbp - chr2L 19763098 intron fbp - chr2L_13_19760001 chr2L_19760001 RAL-502 670 chr2L 19773145 19773189 chr2L 19773252 19773295 7 103 2.0 2.5 2.2 2.2 150 chr2L 19773145 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773295 intergenic not near genes chr2L_7_19770001 chr2L_19770001 RAL-502 671 chr2L 19789991 19790040 chr2L 19790088 19790131 20 95 8.0 8.5 8.2 2.2 140 chr2L 19789991 intron CdGAPr - chr2L 19790061 intron CdGAPr - chr2L 19790131 intron CdGAPr - chr2L_20_19790001 chr2L_19790001 RAL-502 672 chr2L 19824408 19824427 chr2L 19824509 19824530 5 103 3.5 2.5 3.0 1.2 122 chr2L 19824408 intron sick + chr2L 19824469 intron sick + chr2L 19824530 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-502 673 chr2L 19837256 19837304 chr2L 19837356 19837404 22 99 6.0 3.5 4.8 3.8 148 chr2L 19837256 intron sick + chr2L 19837330 intron sick + chr2L 19837404 intron sick + chr2L_22_19835001 chr2L_19835001 RAL-502 674 chr2L 19846238 19846262 chr2L 19846336 19846363 11 100 0.5 7.0 3.8 2.3 125 chr2L 19846238 intron sick + chr2L 19846300 intron sick + chr2L 19846363 intron sick + chr2L_11_19845001 chr2L_19845001 RAL-502 675 chr2L 19941491 19941520 chr2L 19941600 19941629 7 109 3.5 2.5 3.0 1.8 138 chr2L 19941491 intron sick + chr2L 19941560 intron sick + chr2L 19941629 intron sick + chr2L_7_19940001 chr2L_19940001 RAL-502 676 chr2L 19980679 19980703 chr2L 19980775 19980790 5 90 9.0 5.0 7.0 0.6 111 chr2L 19980679 intron CG43861 - chr2L 19980734 intron CG43861 - chr2L 19980790 intron CG43861 - chr2L_5_19980001 chr2L_19980001 RAL-502 677 chr2L 20000053 20000070 chr2L 20000142 20000147 4 93 6.5 3.5 5.0 0.7 94 chr2L 20000053 intron CG43861 - chr2L 20000100 intron CG43861 - chr2L 20000147 intron,3` UTR CG43861 -,CR44908 - chr2L_4_20000001 chr2L_20000001 RAL-502 678 chr2L 20003708 20003720 chr2L 20004759 20004771 5 1049 10.5 6.0 8.2 0.5 1063 chr2L 20003708 intron CG43861 - chr2L 20004240 intron CG43861 - chr2L 20004771 intron CG43861 - chr2L_5_20000001 chr2L_20000001 RAL-502 679 chr2L 20003722 20003750 chr2L 20004756 20004802 14 1046 7.0 5.5 6.2 1.9 1080 chr2L 20003722 intron CG43861 - chr2L 20004262 intron CG43861 - chr2L 20004802 intron CG43861 - chr2L_14_20000001 chr2L_20000001 RAL-502 680 chr2L 20005857 20005900 chr2L 20010953 20010996 flea 7 5095 3.5 2.5 3.0 1.8 5139 chr2L 20005857 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010996 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-502 681 chr2L 20079858 20079908 chr2L 20080001 20080051 13 142 3.0 6.0 4.5 2.4 193 chr2L 20079858 intron,intron neb +,fok - chr2L 20079954 intron,intron neb +,fok - chr2L 20080051 intron,intron neb +,fok - chr2L_13_20075001 chr2L_20075001 RAL-502 682 chr2L 20138807 20138846 chr2L 20138900 20138949 12 100 4.0 5.0 4.5 2.2 142 chr2L 20138807 intergenic not near genes chr2L 20138878 intergenic not near genes chr2L 20138949 intergenic not near genes chr2L_12_20135001 chr2L_20135001 RAL-502 683 chr2L 20272096 20272131 chr2L 20282826 20282862 copia 13 10728 9.5 5.0 7.2 1.6 10766 chr2L 20272096 intergenic not near genes chr2L 20277479 intergenic not near genes chr2L 20282862 intergenic not near genes chr2L_13_20275001 chr2L_20275001 RAL-502 684 chr2L 20303155 20303187 chr2L 20310643 20310674 blood 9 7486 2.5 5.0 3.8 1.9 7519 chr2L 20303155 intergenic not near genes chr2L 20306914 intergenic not near genes chr2L 20310674 intergenic not near genes chr2L_9_20305001 chr2L_20305001 RAL-502 685 chr2L 20315684 20315734 chr2L 20315797 20315843 23 106 6.5 5.5 6.0 3.3 159 chr2L 20315684 intron spir + chr2L 20315764 intron spir + chr2L 20315843 intron spir + chr2L_23_20315001 chr2L_20315001 RAL-502 686 chr2L 20338691 20338739 chr2L 20338791 20338840 10 93 2.0 4.5 3.2 2.4 149 chr2L 20338691 intron spir + chr2L 20338766 intron spir + chr2L 20338840 intron spir + chr2L_10_20335001 chr2L_20335001 RAL-502 687 chr2L 20372210 20372243 chr2L 20372470 20372504 pogo 16 261 0.0 3.5 1.8 5.7 294 chr2L 20372210 intergenic Ugt37a1 - chr2L 20372357 intergenic Ugt37a1 - chr2L 20372504 exon Ugt37a1 - chr2L_16_20370001 chr2L_20370001 RAL-502 688 chr2L 20383421 20383473 chr2L 20383533 20383585 23 109 6.0 7.0 6.5 3.1 164 chr2L 20383421 intergenic not near genes chr2L 20383503 intergenic not near genes chr2L 20383585 intergenic not near genes chr2L_23_20380001 chr2L_20380001 RAL-502 689 chr2L 20492737 20492775 chr2L 20493107 20493145 6 370 3.0 7.0 5.0 1.0 408 chr2L 20492737 intergenic not near genes chr2L 20492941 intergenic not near genes chr2L 20493145 intergenic not near genes chr2L_6_20490001 chr2L_20490001 RAL-502 690 chr2L 20498670 20498708 chr2L 20498789 20498827 17 115 2.5 6.5 4.5 3.1 157 chr2L 20498670 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498827 intergenic not near genes chr2L_17_20495001 chr2L_20495001 RAL-502 691 chr2L 20524170 20524191 chr2L 20524271 20524293 4 101 4.0 0.0 2.0 1.3 123 chr2L 20524170 intergenic not near genes chr2L 20524232 intergenic not near genes chr2L 20524293 intergenic not near genes chr2L_4_20520001 chr2L_20520001 RAL-502 692 chr2L 20549120 20549152 chr2L 20549216 20549254 13 100 3.0 4.0 3.5 2.9 134 chr2L 20549120 intergenic not near genes chr2L 20549187 intergenic not near genes chr2L 20549254 intergenic not near genes chr2L_13_20545001 chr2L_20545001 RAL-502 693 chr2L 20553169 20553220 chr2L 20553265 20553302 8 93 6.0 5.0 5.5 1.2 133 chr2L 20553169 intergenic not near genes chr2L 20553236 intergenic not near genes chr2L 20553302 intergenic not near genes chr2L_8_20550001 chr2L_20550001 RAL-502 694 chr2L 20563545 20563561 chr2L 20563635 20563657 7 93 3.0 4.0 3.5 1.6 112 chr2L 20563545 intron CR45347 + chr2L 20563601 intron CR45347 + chr2L 20563657 intron CR45347 + chr2L_7_20560001 chr2L_20560001 RAL-502 695 chr2L 20568648 20568684 chr2L 20569058 20569094 X-element 14 409 3.0 3.5 3.2 3.3 446 chr2L 20568648 intron CR45347 + chr2L 20568871 intron CR45347 + chr2L 20569094 intron CR45347 + chr2L_14_20565001 chr2L_20565001 RAL-502 696 chr2L 20576197 20576233 chr2L 20583686 20583715 blood 15 7484 7.0 5.5 6.2 2.1 7518 chr2L 20576197 intergenic CR45347 + chr2L 20579956 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_15_20575001 chr2L_20575001 RAL-502 697 chr2L 20602712 20602743 chr2L 20602820 20602851 5 108 3.5 8.5 6.0 0.7 139 chr2L 20602712 intron CR44909 - chr2L 20602782 intron CR44909 - chr2L 20602851 intron CR44909 - chr2L_5_20600001 chr2L_20600001 RAL-502 698 chr2L 20607620 20607659 chr2L 20607719 20607743 4 88 4.5 2.5 3.5 0.9 123 chr2L 20607620 intron,3` UTR CR44909 -,CR43608 - chr2L 20607682 intron,3` UTR CR44909 -,CR43608 - chr2L 20607743 intron,3` UTR CR44909 -,CR43608 - chr2L_4_20605001 chr2L_20605001 RAL-502 699 chr2L 20668677 20668717 chr2L 20668773 20668813 17 94 2.0 5.5 3.8 3.5 136 chr2L 20668677 intron CG31678 - chr2L 20668745 intron CG31678 - chr2L 20668813 intron CG31678 - chr2L_17_20665001 chr2L_20665001 RAL-502 700 chr2L 20674811 20674861 chr2L 20674915 20674959 10 98 4.5 2.0 3.2 2.4 148 chr2L 20674811 intron CG31678 - chr2L 20674885 intron CG31678 - chr2L 20674959 intron CG31678 - chr2L_10_20670001 chr2L_20670001 RAL-502 701 chr2L 20793041 20793112 chr2L 20793205 20793222 8 152 0.0 5.0 2.5 2.3 181 chr2L 20793041 intron vari - chr2L 20793132 intron vari - chr2L 20793222 intron vari - chr2L_8_20790001 chr2L_20790001 RAL-502 702 chr2L 20835801 20835840 chr2L 20836538 20836577 Quasimodo 11 734 1.5 7.0 4.2 2.1 776 chr2L 20835801 5` UTR Oseg5 - chr2L 20836189 intergenic Oseg5 -,Spn38F - chr2L 20836577 intergenic Spn38F - chr2L_11_20835001 chr2L_20835001 RAL-502 703 chr2L 20891517 20891545 chr2L 20896638 20896666 jockey 7 5119 2.0 5.0 3.5 1.6 5149 chr2L 20891517 intron,intron CG43739 -,sky - chr2L 20894092 intron,intron CG43739 -,sky - chr2L 20896666 intron,intron CG43739 -,sky - chr2L_7_20890001 chr2L_20890001 RAL-502 704 chr2L 20947414 20947465 chr2L 20947513 20947564 13 98 4.0 2.0 3.0 3.2 150 chr2L 20947414 3` UTR CR44606 - chr2L 20947489 3` UTR CR44606 - chr2L 20947564 3` UTR CR44606 - chr2L_13_20945001 chr2L_20945001 RAL-502 705 chr2L 20976635 20976674 chr2L 20981469 20981505 X-element 12 4834 6.5 5.5 6.0 1.7 4870 chr2L 20976635 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981505 intron CG42238 - chr2L_12_20975001 chr2L_20975001 RAL-502 706 chr2L 21020267 21020284 chr2L 21023955 21023976 NOF 7 3691 8.0 5.0 6.5 0.9 3709 chr2L 21020267 intron CG42238 - chr2L 21022122 intron CG42238 - chr2L 21023976 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-502 707 chr2L 21020285 21020310 chr2L 21023952 21023968 NOF 6 3679 3.0 4.5 3.8 1.2 3683 chr2L 21020285 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023968 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-502 708 chr2L 21041119 21041166 chr2L 21049400 21049446 Tirant 19 8278 5.0 7.0 6.0 2.7 8327 chr2L 21041119 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049446 intron CG42238 - chr2L_19_21045001 chr2L_21045001 RAL-502 709 chr2L 21119266 21119318 chr2L 21119370 21119415 17 102 3.0 5.5 4.2 3.3 149 chr2L 21119266 intron Nhe2 + chr2L 21119340 intron Nhe2 + chr2L 21119415 intron Nhe2 + chr2L_17_21115001 chr2L_21115001 RAL-502 710 chr2L 21152852 21152896 chr2L 21152959 21153011 14 111 7.0 4.0 5.5 2.2 159 chr2L 21152852 intergenic not near genes chr2L 21152932 intergenic not near genes chr2L 21153011 intergenic not near genes chr2L_14_21150001 chr2L_21150001 RAL-502 711 chr2L 21246492 21246539 chr2L 21246603 21246654 19 103 5.0 4.0 4.5 3.5 162 chr2L 21246492 intron Hr39 + chr2L 21246573 intron Hr39 + chr2L 21246654 intron Hr39 + chr2L_19_21245001 chr2L_21245001 RAL-502 712 chr2L 21286583 21286612 chr2L 21286682 21286711 13 99 5.0 1.0 3.0 3.2 128 chr2L 21286583 exon Mio - chr2L 21286647 intron Mio - chr2L 21286711 intron Mio - chr2L_13_21285001 chr2L_21285001 RAL-502 713 chr2L 21323405 21323431 chr2L 21323513 21323529 5 106 7.5 3.5 5.5 0.8 124 chr2L 21323405 intergenic not near genes chr2L 21323467 intergenic not near genes chr2L 21323529 intergenic not near genes chr2L_5_21320001 chr2L_21320001 RAL-502 714 chr2L 21333601 21333647 chr2L 21333766 21333811 13 154 3.5 4.5 4.0 2.6 210 chr2L 21333601 intron dimm + chr2L 21333706 intron dimm + chr2L 21333811 intron dimm + chr2L_13_21330001 chr2L_21330001 RAL-502 715 chr2L 21347534 21347577 chr2L 21355026 21355069 blood 9 7492 4.0 0.0 2.0 3.0 7535 chr2L 21347534 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355069 intron Tsp39D + chr2L_9_21350001 chr2L_21350001 RAL-502 716 chr2L 21355583 21355636 chr2L 21355748 21355800 15 164 1.5 1.0 1.2 6.8 217 chr2L 21355583 exon Tsp39D + chr2L 21355692 intron Tsp39D + chr2L 21355800 intron Tsp39D + chr2L_15_21355001 chr2L_21355001 RAL-502 717 chr2L 21597037 21597058 chr2L 21604801 21604818 roo 8 7762 4.5 14.5 9.5 0.8 7781 chr2L 21597037 intergenic not near genes chr2L 21600928 intergenic not near genes chr2L 21604818 intergenic not near genes chr2L_8_21600001 chr2L_21600001 RAL-502 718 chr2L 21653176 21653219 chr2L 21656500 21656543 invader4 5 3324 2.5 6.0 4.2 1.0 3367 chr2L 21653176 intergenic not near genes chr2L 21654860 intergenic not near genes chr2L 21656543 intergenic not near genes chr2L_5_21650001 chr2L_21650001 RAL-502 719 chr2L 21684290 21684327 chr2L 21684570 21684610 9 282 3.5 2.5 3.0 2.2 320 chr2L 21684290 intron CG31619 + chr2L 21684450 intron CG31619 + chr2L 21684610 5` UTR CG31619 + chr2L_9_21680001 chr2L_21680001 RAL-502 720 chr2L 21685776 21685810 chr2L 21685872 21685906 12 93 3.5 2.0 2.8 3.2 130 chr2L 21685776 intron CG31619 + chr2L 21685841 intron CG31619 + chr2L 21685906 intron CG31619 + chr2L_12_21685001 chr2L_21685001 RAL-502 721 chr2L 21691812 21691842 chr2L 21698298 21698327 Burdock 6 6488 1.5 0.5 1.0 3.0 6515 chr2L 21691812 intron CG31619 + chr2L 21695070 intron CG31619 + chr2L 21698327 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-502 722 chr2L 21725930 21725949 chr2L 21726020 21726051 6 91 7.5 4.5 6.0 0.9 121 chr2L 21725930 intron CG31619 + chr2L 21725990 intron CG31619 + chr2L 21726051 intron CG31619 + chr2L_6_21725001 chr2L_21725001 RAL-502 723 chr2L 21754639 21754685 chr2L 21754740 21754786 12 100 1.5 3.5 2.5 3.4 147 chr2L 21754639 intron step - chr2L 21754712 intron step - chr2L 21754786 intron step - chr2L_12_21750001 chr2L_21750001 RAL-502 724 chr2L 21755476 21755487 chr2L 21755620 21755628 6 143 13.5 6.0 9.8 0.6 152 chr2L 21755476 intron step - chr2L 21755552 intron step - chr2L 21755628 intron step - chr2L_6_21755001 chr2L_21755001 RAL-502 725 chr2L 21755488 21755517 chr2L 21755616 21755660 13 139 8.0 6.0 7.0 1.6 172 chr2L 21755488 intron step - chr2L 21755574 intron step - chr2L 21755660 intron step - chr2L_13_21755001 chr2L_21755001 RAL-502 726 chr2L 21818988 21819028 chr2L 21819103 21819143 14 113 3.0 6.0 4.5 2.5 155 chr2L 21818988 intergenic not near genes chr2L 21819066 intergenic CR44786 + chr2L 21819143 intergenic CR44786 + chr2L_14_21815001 chr2L_21815001 RAL-502 727 chr2L 21855461 21855512 chr2L 21855567 21855619 13 102 3.5 5.0 4.2 2.5 158 chr2L 21855461 intron CR44917 + chr2L 21855540 intron CR44917 + chr2L 21855619 intron CR44917 + chr2L_13_21855001 chr2L_21855001 RAL-502 728 chr2L 21901401 21901449 chr2L 21901499 21901547 11 97 3.0 6.5 4.8 1.9 146 chr2L 21901401 intergenic not near genes chr2L 21901474 intergenic not near genes chr2L 21901547 intergenic not near genes chr2L_11_21900001 chr2L_21900001 RAL-502 729 chr2L 21946527 21946539 chr2L 21946713 21946725 5 186 4.0 12.5 8.2 0.5 198 chr2L 21946527 intergenic not near genes chr2L 21946626 intergenic not near genes chr2L 21946725 intergenic not near genes chr2L_5_21945001 chr2L_21945001 RAL-502 730 chr2L 21981666 21981711 chr2L 21990848 21990880 roo 14 9181 4.0 11.0 7.5 1.6 9214 chr2L 21981666 exon CG2528 - chr2L 21986273 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_14_21985001 chr2L_21985001 RAL-502 731 chr2L 22011908 22011948 chr2L 22012009 22012048 11 93 3.0 4.0 3.5 2.4 140 chr2L 22011908 intergenic not near genes chr2L 22011978 intergenic not near genes chr2L 22012048 intergenic not near genes chr2L_11_22010001 chr2L_22010001 RAL-502 732 chr2L 22077279 22077311 chr2L 22077380 22077412 8 101 6.0 6.0 6.0 1.1 133 chr2L 22077279 intergenic not near genes chr2L 22077346 intergenic not near genes chr2L 22077412 intergenic not near genes chr2L_8_22075001 chr2L_22075001 RAL-502 733 chr2L 22100550 22100584 chr2L 22100648 22100670 9 96 6.5 3.5 5.0 1.5 120 chr2L 22100550 intergenic not near genes chr2L 22100610 intergenic not near genes chr2L 22100670 intergenic not near genes chr2L_9_22100001 chr2L_22100001 RAL-502 734 chr2L 22165507 22165539 chr2L 22165612 22165644 10 104 2.5 1.0 1.8 3.6 137 chr2L 22165507 3` UTR CG42748 + chr2L 22165576 3` UTR CG42748 + chr2L 22165644 3` UTR CG42748 + chr2L_10_22165001 chr2L_22165001 RAL-502 735 chr2L 22212119 22212157 chr2L 22212686 22212724 6 567 3.5 6.5 5.0 1.0 605 chr2L 22212119 intron Ir40a - chr2L 22212422 intron Ir40a - chr2L 22212724 exon Ir40a - chr2L_6_22210001 chr2L_22210001 RAL-502 736 chr2L 22294349 22294379 chr2L 22294455 22294487 5 108 2.5 1.0 1.8 1.8 138 chr2L 22294349 intergenic not near genes chr2L 22294418 intergenic not near genes chr2L 22294487 intergenic not near genes chr2L_5_22290001 chr2L_22290001 RAL-502 737 chr2L 22581952 22581993 chr2L 22583761 22583801 S-element 8 1809 4.0 4.5 4.2 1.5 1849 chr2L 22581952 intron CG17494 + chr2L 22582876 intron CG17494 + chr2L 22583801 intron CG17494 + chr2L_8_22580001 chr2L_22580001 RAL-502 738 chr2L 22983922 22983972 chr2L 22984017 22984029 9 84 2.5 6.0 4.2 1.7 107 chr2L 22983922 intron cta + chr2L 22983976 intron cta + chr2L 22984029 intron cta + chr2L_9_22980001 chr2L_22980001 RAL-502 739 chr2L 23025906 23025931 chr2L 23026017 23026045 14 113 26.0 21.0 23.5 0.6 139 chr2L 23025906 5` UTR Cht3 - chr2L 23025976 intergenic Cht3 - chr2L 23026045 intergenic Cht3 - chr2L_14_23025001 chr2L_23025001 RAL-502 740 chr2R 552741 552788 chr2R 553974 553991 1360 4 1221 1.0 2.5 1.8 1.4 1250 chr2R 552741 intron CG40378 + chr2R 553366 intron CG40378 + chr2R 553991 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-502 741 chr2R 672943 672974 chr2R 673037 673071 7 96 3.0 2.5 2.8 1.8 128 chr2R 672943 intergenic not near genes chr2R 673007 intergenic not near genes chr2R 673071 intergenic not near genes chr2R_7_670001 chr2R_670001 RAL-502 742 chr2R 1082380 1082384 chr2R 1087129 1087132 Doc 5 4749 5.0 6.0 5.5 0.8 4752 chr2R 1082380 intron rl + chr2R 1084756 intron rl + chr2R 1087132 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-502 743 chr2R 1365845 1365895 chr2R 1365974 1366026 13 131 3.0 7.0 5.0 2.2 181 chr2R 1365845 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366026 intron l(2)41Ab + chr2R_13_1365001 chr2R_1365001 RAL-502 744 chr2R 1516588 1516603 chr2R 1521336 1521351 1731 6 4748 16.5 3.0 9.8 0.6 4763 chr2R 1516588 exon Maf1 - chr2R 1518970 intron Maf1 - chr2R 1521351 5` UTR Maf1 - chr2R_6_1515001 chr2R_1515001 RAL-502 745 chr2R 1600550 1600574 chr2R 1600965 1600981 8 412 22.5 34.0 28.2 0.3 431 chr2R 1600550 intergenic not near genes chr2R 1600766 intergenic not near genes chr2R 1600981 intergenic not near genes chr2R_8_1600001 chr2R_1600001 RAL-502 746 chr2R 1600575 1600587 chr2R 1600958 1600996 6 409 22.5 34.5 28.5 0.2 421 chr2R 1600575 intergenic not near genes chr2R 1600786 intergenic not near genes chr2R 1600996 intergenic not near genes chr2R_6_1600001 chr2R_1600001 RAL-502 747 chr2R 1685459 1685499 chr2R 1685567 1685607 7 107 1.5 1.5 1.5 2.8 148 chr2R 1685459 intron CG41520 + chr2R 1685533 intron CG41520 + chr2R 1685607 intron CG41520 + chr2R_7_1685001 chr2R_1685001 RAL-502 748 chr2R 2015124 2015165 chr2R 2015212 2015227 8 92 2.0 2.0 2.0 2.7 103 chr2R 2015124 intron CG17684 - chr2R 2015176 intron CG17684 - chr2R 2015227 intron CG17684 - chr2R_8_2015001 chr2R_2015001 RAL-502 749 chr2R 2498968 2499016 chr2R 2508135 2508171 roo 17 9164 5.0 6.0 5.5 2.6 9203 chr2R 2498968 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508171 intron MFS17 - chr2R_17_2500001 chr2R_2500001 RAL-502 750 chr2R 2508290 2508332 chr2R 2508448 2508490 13 157 7.0 8.0 7.5 1.5 200 chr2R 2508290 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508490 intron MFS17 - chr2R_13_2505001 chr2R_2505001 RAL-502 751 chr2R 2942270 2942318 chr2R 2942393 2942440 15 123 2.0 5.5 3.8 3.1 170 chr2R 2942270 intron Scp1 - chr2R 2942355 intron Scp1 - chr2R 2942440 intron Scp1 - chr2R_15_2940001 chr2R_2940001 RAL-502 752 chr2R 2944981 2945005 chr2R 2945055 2945069 11 86 2.0 4.5 3.2 2.6 88 chr2R 2944981 intron Scp1 - chr2R 2945025 intron Scp1 - chr2R 2945069 intron Scp1 - chr2R_11_2945001 chr2R_2945001 RAL-502 753 chr2R 2950416 2950470 chr2R 2950558 2950587 8 137 4.5 8.0 6.2 1.1 171 chr2R 2950416 intron Scp1 - chr2R 2950502 intron Scp1 - chr2R 2950587 intron Scp1 - chr2R_8_2950001 chr2R_2950001 RAL-502 754 chr2R 3144069 3144105 chr2R 3393365 3393403 Doc 8 249296 26.5 8.0 17.2 0.4 249334 chr2R 3144069 intron CG42596 + chr2R 3268736 intergenic not near genes chr2R 3393403 intergenic not near genes chr2R_8_3265001 chr2R_3265001 RAL-502 755 chr2R 3291846 3292102 chr2R 3915027 3915278 11 623180 10.5 30.5 20.5 0.5 623432 chr2R 3291846 intergenic not near genes chr2R 3603562 intergenic not near genes chr2R 3915278 intron uex - chr2R_11_3600001 chr2R_3600001 RAL-502 756 chr2R 3293725 3293758 chr2R 3293821 3293851 7 93 4.5 1.5 3.0 1.8 126 chr2R 3293725 intergenic not near genes chr2R 3293788 intergenic not near genes chr2R 3293851 intergenic not near genes chr2R_7_3290001 chr2R_3290001 RAL-502 757 chr2R 3399228 3399259 chr2R 3399318 3399347 9 98 2.5 3.5 3.0 2.2 119 chr2R 3399228 intergenic not near genes chr2R 3399288 intergenic not near genes chr2R 3399347 intergenic not near genes chr2R_9_3395001 chr2R_3395001 RAL-502 758 chr2R 3532605 3532642 chr2R 3536068 3536098 Doc 6 3462 1.5 0.5 1.0 3.0 3493 chr2R 3532605 intergenic not near genes chr2R 3534352 intergenic not near genes chr2R 3536098 intergenic not near genes chr2R_6_3530001 chr2R_3530001 RAL-502 759 chr2R 4138628 4138669 chr2R 4138725 4138764 18 96 4.0 3.5 3.8 3.8 136 chr2R 4138628 intergenic not near genes chr2R 4138696 intergenic not near genes chr2R 4138764 intergenic not near genes chr2R_18_4135001 chr2R_4135001 RAL-502 760 chr2R 4312943 4313127 chr2R 4313047 4313209 21 100 4.0 4.5 4.2 4.0 266 chr2R 4312943 intergenic not near genes chr2R 4313076 intergenic not near genes chr2R 4313209 intergenic not near genes chr2R_21_4310001 chr2R_4310001 RAL-502 761 chr2R 4387298 4387311 chr2R 4387469 4387482 7 171 5.0 0.0 2.5 2.0 184 chr2R 4387298 intron Gprk1 - chr2R 4387390 intron Gprk1 - chr2R 4387482 intron Gprk1 - chr2R_7_4385001 chr2R_4385001 RAL-502 762 chr2R 4750331 4750377 chr2R 4751508 4751513 1360 17 1172 4.0 3.5 3.8 3.5 1182 chr2R 4750331 intron conu + chr2R 4750922 intron conu + chr2R 4751513 intron conu + chr2R_17_4750001 chr2R_4750001 RAL-502 763 chr2R 4821196 4821248 chr2R 4821301 4821352 12 103 3.0 3.0 3.0 3.0 156 chr2R 4821196 intron CG17528 - chr2R 4821274 intron CG17528 - chr2R 4821352 intron CG17528 - chr2R_12_4820001 chr2R_4820001 RAL-502 764 chr2R 4933364 4933390 chr2R 4933919 4933968 12 570 2.0 3.5 2.8 3.2 604 chr2R 4933364 intron Ir41a + chr2R 4933666 intron Ir41a + chr2R 4933968 intron Ir41a + chr2R_12_4930001 chr2R_4930001 RAL-502 765 chr2R 5019263 5019301 chr2R 5019362 5019407 11 104 3.0 4.5 3.8 2.3 144 chr2R 5019263 intron Ir41a + chr2R 5019335 intron Ir41a + chr2R 5019407 intron Ir41a + chr2R_11_5015001 chr2R_5015001 RAL-502 766 chr2R 5040746 5040750 chr2R 5041248 5041260 5 508 4.5 6.0 5.2 0.8 514 chr2R 5040746 intergenic not near genes chr2R 5041003 intergenic not near genes chr2R 5041260 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-502 767 chr2R 5075930 5075981 chr2R 5076072 5076124 9 144 21.0 19.5 20.2 0.4 194 chr2R 5075930 intergenic not near genes chr2R 5076027 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_9_5075001 chr2R_5075001 RAL-502 768 chr2R 5188688 5188731 chr2R 5189401 5189416 gypsy8 10 705 2.5 6.5 4.5 1.8 728 chr2R 5188688 intron Nipped-A - chr2R 5189052 intron Nipped-A - chr2R 5189416 intron Nipped-A - chr2R_10_5185001 chr2R_5185001 RAL-502 769 chr2R 5237330 5237372 chr2R 5237432 5237465 16 99 3.5 0.5 2.0 5.3 135 chr2R 5237330 intron Nipped-A - chr2R 5237398 intron Nipped-A - chr2R 5237465 intron Nipped-A - chr2R_16_5235001 chr2R_5235001 RAL-502 770 chr2R 5267581 5267603 chr2R 5267688 5267710 4 107 11.0 9.5 10.2 0.4 129 chr2R 5267581 intron d4 + chr2R 5267646 intron d4 + chr2R 5267710 intron d4 + chr2R_4_5265001 chr2R_5265001 RAL-502 771 chr2R 5267606 5267627 chr2R 5267685 5267734 9 101 6.5 8.5 7.5 1.1 128 chr2R 5267606 intron d4 + chr2R 5267670 intron d4 + chr2R 5267734 intron d4 + chr2R_9_5265001 chr2R_5265001 RAL-502 772 chr2R 5417977 5418017 chr2R 5420629 5420667 Burdock 8 2650 6.0 5.0 5.5 1.2 2690 chr2R 5417977 intron laccase2 + chr2R 5419322 intron laccase2 + chr2R 5420667 intron laccase2 + chr2R_8_5415001 chr2R_5415001 RAL-502 773 chr2R 5472333 5472393 chr2R 5472459 5472504 9 99 0.5 4.0 2.2 2.8 171 chr2R 5472333 intron CG30440 - chr2R 5472418 intron CG30440 - chr2R 5472504 intron CG30440 - chr2R_9_5470001 chr2R_5470001 RAL-502 774 chr2R 5475576 5475624 chr2R 5475690 5475738 8 114 0.5 1.5 1.0 4.0 162 chr2R 5475576 intron CG30440 - chr2R 5475657 intron CG30440 - chr2R 5475738 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-502 775 chr2R 5476334 5476382 chr2R 5476897 5476946 11 561 6.0 7.0 6.5 1.5 612 chr2R 5476334 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476946 intron CG30440 - chr2R_11_5475001 chr2R_5475001 RAL-502 776 chr2R 5581405 5581423 chr2R 5627608 5627633 12 46224 0.0 14.5 7.2 1.5 46228 chr2R 5581405 intergenic not near genes chr2R 5604519 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_12_5600001 chr2R_5600001 RAL-502 777 chr2R 5743958 5744000 chr2R 5744060 5744101 13 102 4.0 4.0 4.0 2.6 143 chr2R 5743958 intergenic not near genes chr2R 5744030 intergenic not near genes chr2R 5744101 intergenic not near genes chr2R_13_5740001 chr2R_5740001 RAL-502 778 chr2R 5750437 5750453 chr2R 5750549 5750564 7 112 12.5 7.0 9.8 0.6 127 chr2R 5750437 intergenic not near genes chr2R 5750500 intergenic not near genes chr2R 5750564 intergenic not near genes chr2R_7_5750001 chr2R_5750001 RAL-502 779 chr2R 5774296 5774305 chr2R 5774542 5774579 6 268 4.0 5.0 4.5 1.1 283 chr2R 5774296 3` UTR Gp210 + chr2R 5774438 intergenic Gp210 +,ZnT41F - chr2R 5774579 intergenic ZnT41F -,Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-502 780 chr2R 5840735 5840754 chr2R 5840838 5840845 7 101 9.5 5.5 7.5 0.8 110 chr2R 5840735 intron dpr12 + chr2R 5840790 intron dpr12 + chr2R 5840845 intron dpr12 + chr2R_7_5840001 chr2R_5840001 RAL-502 781 chr2R 5840756 5840778 chr2R 5840834 5840881 9 98 5.5 5.0 5.2 1.5 125 chr2R 5840756 intron dpr12 + chr2R 5840818 intron dpr12 + chr2R 5840881 intron dpr12 + chr2R_9_5840001 chr2R_5840001 RAL-502 782 chr2R 5869254 5869305 chr2R 5874350 5874398 flea 17 5094 5.5 4.0 4.8 2.9 5144 chr2R 5869254 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874398 intergenic not near genes chr2R_17_5870001 chr2R_5870001 RAL-502 783 chr2R 5885355 5885374 chr2R 5885504 5885523 7 148 5.5 5.0 5.2 1.1 168 chr2R 5885355 5` UTR CR44125 + chr2R 5885439 5` UTR CR44125 + chr2R 5885523 5` UTR CR44125 + chr2R_7_5885001 chr2R_5885001 RAL-502 784 chr2R 5951166 5951189 chr2R 5951271 5951288 7 103 5.5 9.5 7.5 0.8 122 chr2R 5951166 intergenic not near genes chr2R 5951227 intergenic not near genes chr2R 5951288 intergenic not near genes chr2R_7_5950001 chr2R_5950001 RAL-502 785 chr2R 6053275 6053293 chr2R 6053370 6053379 6 92 7.0 7.5 7.2 0.7 104 chr2R 6053275 intron CCHa2-R + chr2R 6053327 intron CCHa2-R + chr2R 6053379 intron CCHa2-R + chr2R_6_6050001 chr2R_6050001 RAL-502 786 chr2R 6053301 6053321 chr2R 6053369 6053417 6 83 1.5 7.0 4.2 1.2 116 chr2R 6053301 intron CCHa2-R + chr2R 6053359 intron CCHa2-R + chr2R 6053417 intron CCHa2-R + chr2R_6_6050001 chr2R_6050001 RAL-502 787 chr2R 6088368 6088388 chr2R 6088481 6088501 7 112 2.5 3.5 3.0 1.8 133 chr2R 6088368 intergenic not near genes chr2R 6088434 intergenic not near genes chr2R 6088501 intergenic not near genes chr2R_7_6085001 chr2R_6085001 RAL-502 788 chr2R 6096696 6096746 chr2R 6101913 6101919 BS 9 5205 8.0 4.0 6.0 1.3 5223 chr2R 6096696 intron EcR - chr2R 6099308 intron EcR - chr2R 6101919 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-502 789 chr2R 6129307 6129355 chr2R 6129405 6129453 17 93 4.0 5.0 4.5 3.1 146 chr2R 6129307 intron EcR - chr2R 6129380 intron EcR - chr2R 6129453 intron EcR - chr2R_17_6125001 chr2R_6125001 RAL-502 790 chr2R 6144389 6144436 chr2R 6144492 6144540 16 103 3.5 3.0 3.2 3.8 151 chr2R 6144389 intron EcR - chr2R 6144464 intron EcR - chr2R 6144540 intron EcR - chr2R_16_6140001 chr2R_6140001 RAL-502 791 chr2R 6168181 6168223 chr2R 6168283 6168325 10 100 5.0 5.0 5.0 1.7 144 chr2R 6168181 intron EcR - chr2R 6168253 intron EcR - chr2R 6168325 intron EcR - chr2R_10_6165001 chr2R_6165001 RAL-502 792 chr2R 6178101 6178144 chr2R 6178247 6178289 8 146 5.0 5.0 5.0 1.3 188 chr2R 6178101 intergenic not near genes chr2R 6178195 intergenic not near genes chr2R 6178289 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-502 793 chr2R 6194673 6194693 chr2R 6194776 6194776 6 99 5.0 6.0 5.5 0.9 103 chr2R 6194673 intron Ptr - chr2R 6194724 intron Ptr - chr2R 6194776 intron Ptr - chr2R_6_6190001 chr2R_6190001 RAL-502 794 chr2R 6494529 6494547 chr2R 6499301 6499329 F-element 5 4778 5.0 2.0 3.5 1.1 4800 chr2R 6494529 intergenic not near genes chr2R 6496929 intergenic not near genes chr2R 6499329 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-502 795 chr2R 6530758 6530778 chr2R 6530858 6530876 7 100 5.5 3.5 4.5 1.3 118 chr2R 6530758 intron jing + chr2R 6530817 intron jing + chr2R 6530876 intron jing + chr2R_7_6530001 chr2R_6530001 RAL-502 796 chr2R 6541053 6541106 chr2R 6541149 6541202 22 95 3.0 5.0 4.0 4.4 149 chr2R 6541053 intron jing + chr2R 6541128 intron jing + chr2R 6541202 intron jing + chr2R_22_6540001 chr2R_6540001 RAL-502 797 chr2R 6551997 6552024 chr2R 6552101 6552147 10 116 3.0 2.0 2.5 2.9 150 chr2R 6551997 intron jing + chr2R 6552072 intron jing + chr2R 6552147 intron jing + chr2R_10_6550001 chr2R_6550001 RAL-502 798 chr2R 6579754 6579770 chr2R 6584860 6584876 flea 4 5106 5.0 2.0 3.5 0.9 5122 chr2R 6579754 intron jing + chr2R 6582315 intron jing + chr2R 6584876 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-502 799 chr2R 6579772 6579805 chr2R 6584859 6584911 flea 9 5103 1.5 2.0 1.8 3.2 5139 chr2R 6579772 intron jing + chr2R 6582342 intron jing + chr2R 6584911 intron jing + chr2R_9_6580001 chr2R_6580001 RAL-502 800 chr2R 6612115 6612150 chr2R 6612209 6612250 11 94 5.0 5.5 5.2 1.8 135 chr2R 6612115 intron jing + chr2R 6612182 intron jing + chr2R 6612250 intron jing + chr2R_11_6610001 chr2R_6610001 RAL-502 801 chr2R 6612152 6612154 chr2R 6612221 6612254 4 92 4.5 7.0 5.8 0.6 102 chr2R 6612152 intron jing + chr2R 6612203 intron jing + chr2R 6612254 intron jing + chr2R_4_6610001 chr2R_6610001 RAL-502 802 chr2R 6633182 6633228 chr2R 6633279 6633325 11 96 4.5 3.5 4.0 2.2 143 chr2R 6633182 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633325 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-502 803 chr2R 6646779 6646828 chr2R 6647071 6647120 21 288 5.5 3.5 4.5 3.8 341 chr2R 6646779 intergenic not near genes chr2R 6646950 intergenic not near genes chr2R 6647120 intergenic not near genes chr2R_21_6645001 chr2R_6645001 RAL-502 804 chr2R 6647324 6647332 chr2R 6647419 6647428 6 95 8.0 4.0 6.0 0.9 104 chr2R 6647324 intergenic not near genes chr2R 6647376 intergenic not near genes chr2R 6647428 intergenic not near genes chr2R_6_6645001 chr2R_6645001 RAL-502 805 chr2R 6699575 6699622 chr2R 6699680 6699727 5 105 1.5 1.0 1.2 2.3 152 chr2R 6699575 intergenic Rab2 + chr2R 6699651 intergenic Rab2 + chr2R 6699727 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_5_6695001 chr2R_6695001 RAL-502 806 chr2R 6846277 6846323 chr2R 6846629 6846675 13 351 7.5 4.5 6.0 1.9 398 chr2R 6846277 intergenic not near genes chr2R 6846476 intergenic not near genes chr2R 6846675 intergenic not near genes chr2R_13_6845001 chr2R_6845001 RAL-502 807 chr2R 6857075 6857110 chr2R 6857215 6857250 9 131 2.0 6.0 4.0 1.8 175 chr2R 6857075 intergenic not near genes chr2R 6857162 intergenic not near genes chr2R 6857250 intergenic not near genes chr2R_9_6855001 chr2R_6855001 RAL-502 808 chr2R 6874453 6874490 chr2R 6874582 6874617 10 124 4.0 7.5 5.8 1.5 164 chr2R 6874453 exon,intron CG9447 -,CR44169 + chr2R 6874535 exon,intron CG9447 -,CR44169 + chr2R 6874617 exon,intron CG9447 -,CR44169 + chr2R_10_6870001 chr2R_6870001 RAL-502 809 chr2R 6952159 6952184 chr2R 6959759 6959784 opus 6 7600 6.0 2.5 4.2 1.2 7625 chr2R 6952159 intron,intron mim -,CheB42c - chr2R 6955972 intron,intron mim -,CheB42c - chr2R 6959784 intron,intron mim -,CheB42c - chr2R_6_6955001 chr2R_6955001 RAL-502 810 chr2R 6962434 6962456 chr2R 6962811 6962833 11 376 11.0 9.5 10.2 1.0 399 chr2R 6962434 intron,intron mim -,CheB42c - chr2R 6962634 intron,intron mim -,CheB42c - chr2R 6962833 intron,intron mim -,CheB42c - chr2R_11_6960001 chr2R_6960001 RAL-502 811 chr2R 6962457 6962480 chr2R 6962807 6962857 12 374 5.0 9.5 7.2 1.5 400 chr2R 6962457 intron,intron mim -,CheB42c - chr2R 6962657 intron,intron mim -,CheB42c - chr2R 6962857 intron,intron mim -,CheB42c - chr2R_12_6960001 chr2R_6960001 RAL-502 812 chr2R 7153167 7153183 chr2R 7153255 7153272 5 92 4.5 5.5 5.0 0.8 105 chr2R 7153167 intron,intron pk +,Spn43Ab - chr2R 7153220 intron,intron pk +,Spn43Ab - chr2R 7153272 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-502 813 chr2R 7209861 7209874 chr2R 7217642 7217655 roo 7 7780 2.0 3.0 2.5 2.0 7794 chr2R 7209861 intron pk + chr2R 7213758 intron pk + chr2R 7217655 intron pk + chr2R_7_7210001 chr2R_7210001 RAL-502 814 chr2R 7235820 7235848 chr2R 7240911 7240956 jockey 8 5103 4.0 3.5 3.8 1.7 5136 chr2R 7235820 intergenic not near genes chr2R 7238388 intergenic not near genes chr2R 7240956 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-502 815 chr2R 7262180 7262215 chr2R 7269261 7269294 297 5 7071 2.5 5.5 4.0 1.0 7114 chr2R 7262180 intergenic not near genes chr2R 7265737 intergenic not near genes chr2R 7269294 intergenic not near genes chr2R_5_7265001 chr2R_7265001 RAL-502 816 chr2R 7353366 7353416 chr2R 7353492 7353542 16 125 5.0 2.5 3.8 3.3 176 chr2R 7353366 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353542 intron Dscam1 - chr2R_16_7350001 chr2R_7350001 RAL-502 817 chr2R 7417883 7417891 chr2R 7417989 7417997 4 106 9.0 8.0 8.5 0.4 114 chr2R 7417883 intergenic not near genes chr2R 7417940 intergenic not near genes chr2R 7417997 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-502 818 chr2R 7434890 7434908 chr2R 7439206 7439228 Juan 8 4319 6.0 3.5 4.8 1.4 4338 chr2R 7434890 intergenic so + chr2R 7437059 intergenic not near genes chr2R 7439228 intergenic not near genes chr2R_8_7435001 chr2R_7435001 RAL-502 819 chr2R 7529047 7529072 chr2R 7529152 7529182 11 107 6.0 8.5 7.2 1.3 135 chr2R 7529047 intron Drat - chr2R 7529114 intron Drat - chr2R 7529182 intron Drat - chr2R_11_7525001 chr2R_7525001 RAL-502 820 chr2R 7608393 7608441 chr2R 7613616 7613663 I-element 6 5219 3.0 0.0 1.5 2.4 5270 chr2R 7608393 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613663 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-502 821 chr2R 7614498 7614514 chr2R 7614567 7614571 4 72 3.5 4.5 4.0 0.8 73 chr2R 7614498 intron CG1358 - chr2R 7614534 intron CG1358 - chr2R 7614571 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-502 822 chr2R 7642858 7642892 chr2R 7642947 7642992 16 98 7.5 3.0 5.2 2.6 134 chr2R 7642858 intron CG43340 + chr2R 7642925 intron CG43340 + chr2R 7642992 intron CG43340 + chr2R_16_7640001 chr2R_7640001 RAL-502 823 chr2R 7692007 7692033 chr2R 7692106 7692131 7 100 5.0 4.5 4.8 1.2 124 chr2R 7692007 intron CG1399 - chr2R 7692069 intron CG1399 - chr2R 7692131 intron CG1399 - chr2R_7_7690001 chr2R_7690001 RAL-502 824 chr2R 7714061 7714098 chr2R 7714157 7714181 16 95 10.0 5.0 7.5 1.9 120 chr2R 7714061 exon CG1942 + chr2R 7714121 3` UTR CG1942 + chr2R 7714181 3` UTR CG1942 + chr2R_16_7710001 chr2R_7710001 RAL-502 825 chr2R 7815653 7815700 chr2R 7822140 7822189 Burdock 16 6487 6.0 8.0 7.0 2.0 6536 chr2R 7815653 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822189 3` UTR cathD - chr2R_16_7815001 chr2R_7815001 RAL-502 826 chr2R 7861449 7861454 chr2R 7861681 7861686 4 232 10.0 5.0 7.5 0.5 237 chr2R 7861449 intron Dgk - chr2R 7861568 intron Dgk - chr2R 7861686 intron Dgk - chr2R_4_7860001 chr2R_7860001 RAL-502 827 chr2R 7861455 7861471 chr2R 7861680 7861703 7 231 7.5 5.0 6.2 1.0 248 chr2R 7861455 intron Dgk - chr2R 7861579 intron Dgk - chr2R 7861703 intron Dgk - chr2R_7_7860001 chr2R_7860001 RAL-502 828 chr2R 7861472 7861490 chr2R 7861678 7861722 12 230 5.5 5.0 5.2 1.9 250 chr2R 7861472 intron Dgk - chr2R 7861597 intron Dgk - chr2R 7861722 intron Dgk - chr2R_12_7860001 chr2R_7860001 RAL-502 829 chr2R 7862233 7862247 chr2R 7867368 7867380 flea 5 5133 3.0 8.5 5.8 0.7 5147 chr2R 7862233 intron Dgk - chr2R 7864806 intron Dgk - chr2R 7867380 intron Dgk - chr2R_5_7860001 chr2R_7860001 RAL-502 830 chr2R 7869183 7869214 chr2R 7873976 7874001 Doc 8 4797 3.5 2.5 3.0 2.0 4818 chr2R 7869183 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7874001 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-502 831 chr2R 7897136 7897153 chr2R 7897211 7897262 11 104 0.0 4.5 2.2 3.4 126 chr2R 7897136 intron CG30377 + chr2R 7897199 intron CG30377 + chr2R 7897262 intron CG30377 + chr2R_11_7895001 chr2R_7895001 RAL-502 832 chr2R 8006830 8006875 chr2R 8007009 8007054 9 179 5.5 6.5 6.0 1.3 224 chr2R 8006830 intergenic Odc1 +,Odc2 + chr2R 8006942 intergenic Odc1 +,Odc2 + chr2R 8007054 intergenic Odc2 +,Odc1 + chr2R_9_8005001 chr2R_8005001 RAL-502 833 chr2R 8014109 8014149 chr2R 8014205 8014245 9 95 2.5 3.0 2.8 2.4 136 chr2R 8014109 intergenic CG14762 - chr2R 8014177 intergenic CG14762 - chr2R 8014245 intergenic CG14762 - chr2R_9_8010001 chr2R_8010001 RAL-502 834 chr2R 8015667 8015681 chr2R 8017692 8017708 5 2026 3.0 5.5 4.2 1.0 2041 chr2R 8015667 intergenic mir-4981 + chr2R 8016688 intergenic not near genes chr2R 8017708 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-502 835 chr2R 8035999 8036039 chr2R 8036097 8036137 15 93 6.5 7.5 7.0 1.9 138 chr2R 8035999 intron Optix + chr2R 8036068 intron Optix + chr2R 8036137 intron Optix + chr2R_15_8035001 chr2R_8035001 RAL-502 836 chr2R 8153784 8153817 chr2R 8154136 8154160 6 350 4.0 7.0 5.5 0.9 376 chr2R 8153784 intron,intron Lpin -,kermit - chr2R 8153972 intron,intron Lpin -,kermit - chr2R 8154160 intron,intron Lpin -,kermit - chr2R_6_8150001 chr2R_8150001 RAL-502 837 chr2R 8160917 8160947 chr2R 8161027 8161057 1360 13 104 6.5 16.0 11.2 1.1 140 chr2R 8160917 exon CG8708 - chr2R 8160987 intron CG8708 - chr2R 8161057 intron CG8708 - chr2R_13_8160001 chr2R_8160001 RAL-502 838 chr2R 8172802 8172837 chr2R 8172917 8172947 10 113 3.0 1.5 2.2 3.1 145 chr2R 8172802 intron CG14757 - chr2R 8172874 intron CG14757 - chr2R 8172947 intron CG14757 - chr2R_10_8170001 chr2R_8170001 RAL-502 839 chr2R 8209034 8209077 chr2R 8209138 8209157 11 99 10.0 0.0 5.0 1.8 123 chr2R 8209034 intron LRP1 + chr2R 8209096 intron LRP1 + chr2R 8209157 intron LRP1 + chr2R_11_8205001 chr2R_8205001 RAL-502 840 chr2R 8236017 8236060 chr2R 8236118 8236160 8 99 4.0 2.0 3.0 2.0 143 chr2R 8236017 intergenic not near genes chr2R 8236088 intergenic not near genes chr2R 8236160 intergenic not near genes chr2R_8_8235001 chr2R_8235001 RAL-502 841 chr2R 8277648 8277667 chr2R 8277732 8277782 7 92 1.0 2.5 1.8 2.5 134 chr2R 8277648 5` UTR CR44280 + chr2R 8277715 5` UTR CR44280 + chr2R 8277782 5` UTR CR44280 + chr2R_7_8275001 chr2R_8275001 RAL-502 842 chr2R 8278952 8278975 chr2R 8279152 8279175 5 199 0.0 7.0 3.5 1.1 223 chr2R 8278952 intergenic not near genes chr2R 8279064 intergenic not near genes chr2R 8279175 intergenic not near genes chr2R_5_8275001 chr2R_8275001 RAL-502 843 chr2R 8327496 8327543 chr2R 8327935 8327985 8 450 29.0 33.0 31.0 0.2 489 chr2R 8327496 5` UTR pdm3 + chr2R 8327740 5` UTR pdm3 + chr2R 8327985 5` UTR pdm3 + chr2R_8_8325001 chr2R_8325001 RAL-502 844 chr2R 8328272 8328308 chr2R 8328374 8328397 9 101 0.5 2.5 1.5 3.6 125 chr2R 8328272 intron pdm3 + chr2R 8328334 intron pdm3 + chr2R 8328397 intron pdm3 + chr2R_9_8325001 chr2R_8325001 RAL-502 845 chr2R 8330859 8330881 chr2R 8331350 8331381 roo 8 503 2.5 6.5 4.5 1.5 522 chr2R 8330859 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331381 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-502 846 chr2R 8353718 8353756 chr2R 8353842 8353850 8 119 6.5 3.5 5.0 1.3 132 chr2R 8353718 intron pdm3 + chr2R 8353784 intron pdm3 + chr2R 8353850 intron pdm3 + chr2R_8_8350001 chr2R_8350001 RAL-502 847 chr2R 8398203 8398218 chr2R 8402996 8403016 Doc 4 4796 4.5 5.5 5.0 0.7 4813 chr2R 8398203 intron CG2121 - chr2R 8400610 intron CG2121 - chr2R 8403016 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-502 848 chr2R 8398226 8398243 chr2R 8402990 8403044 Doc 8 4785 2.5 4.0 3.2 1.9 4818 chr2R 8398226 intron CG2121 - chr2R 8400635 intron CG2121 - chr2R 8403044 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-502 849 chr2R 8483955 8483993 chr2R 8484051 8484088 9 92 3.0 3.5 3.2 2.1 133 chr2R 8483955 intron mtt - chr2R 8484022 intron mtt - chr2R 8484088 intron mtt - chr2R_9_8480001 chr2R_8480001 RAL-502 850 chr2R 8518781 8518800 chr2R 12066268 12066287 6 3547487 16.0 0.0 8.0 0.7 3547506 chr2R 8518781 intron mtt - chr2R 10292534 intron CAP + chr2R 12066287 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-502 851 chr2R 8531898 8531926 chr2R 8532167 8532192 12 268 6.0 6.5 6.2 1.7 294 chr2R 8531898 5` UTR mtt - chr2R 8532045 5` UTR mtt - chr2R 8532192 5` UTR mtt - chr2R_12_8530001 chr2R_8530001 RAL-502 852 chr2R 8531928 8531947 chr2R 8532162 8532216 12 265 3.0 5.0 4.0 2.4 288 chr2R 8531928 5` UTR mtt - chr2R 8532072 5` UTR mtt - chr2R 8532216 5` UTR mtt - chr2R_12_8530001 chr2R_8530001 RAL-502 853 chr2R 8615762 8615803 chr2R 8615895 8615936 14 130 3.5 6.0 4.8 2.4 174 chr2R 8615762 intron Cirl + chr2R 8615849 intron Cirl + chr2R 8615936 5` UTR Cirl + chr2R_14_8615001 chr2R_8615001 RAL-502 854 chr2R 8635908 8635933 chr2R 8636006 8636030 4 96 0.0 5.5 2.8 1.1 122 chr2R 8635908 intergenic not near genes chr2R 8635969 intergenic not near genes chr2R 8636030 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-502 855 chr2R 8691106 8691146 chr2R 8691595 8691629 16 487 5.0 2.0 3.5 3.6 523 chr2R 8691106 intergenic Jon44E + chr2R 8691368 intergenic Jon44E + chr2R 8691629 exon Jon44E + chr2R_16_8690001 chr2R_8690001 RAL-502 856 chr2R 8722746 8722760 chr2R 8723006 8723021 pogo 5 259 10.0 3.5 6.8 0.6 275 chr2R 8722746 intron CG14767 - chr2R 8722884 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-502 857 chr2R 8722761 8722793 chr2R 8723005 8723036 pogo 11 247 5.5 3.5 4.5 2.0 275 chr2R 8722761 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_11_8720001 chr2R_8720001 RAL-502 858 chr2R 8777933 8777942 chr2R 8784157 8784165 diver 4 6224 2.5 7.5 5.0 0.7 6232 chr2R 8777933 intergenic not near genes chr2R 8781049 intergenic not near genes chr2R 8784165 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-502 859 chr2R 8847168 8847193 chr2R 8847290 8847311 5 119 6.5 11.5 9.0 0.5 143 chr2R 8847168 intron sns + chr2R 8847240 intron sns + chr2R 8847311 intron sns + chr2R_5_8845001 chr2R_8845001 RAL-502 860 chr2R 9132087 9132120 chr2R 9132184 9132216 5 96 1.0 2.5 1.8 1.8 129 chr2R 9132087 intergenic CG18659 -,Hydr1 + chr2R 9132152 intergenic CG18659 -,Hydr1 + chr2R 9132216 intergenic CG18659 -,Hydr1 + chr2R_5_9130001 chr2R_9130001 RAL-502 861 chr2R 9151282 9151334 chr2R 9157771 9157810 Burdock 19 6487 6.5 4.0 5.2 3.1 6528 chr2R 9151282 exon CG30345 + chr2R 9154546 intergenic not near genes chr2R 9157810 intergenic CG8008 - chr2R_19_9150001 chr2R_9150001 RAL-502 862 chr2R 9212688 9212722 chr2R 9213182 9213217 roo 10 501 8.0 5.0 6.5 1.3 529 chr2R 9212688 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213217 5` UTR CR45309 + chr2R_10_9210001 chr2R_9210001 RAL-502 863 chr2R 9227860 9227902 chr2R 9227967 9228009 10 100 4.0 7.0 5.5 1.5 149 chr2R 9227860 3` UTR hig - chr2R 9227934 3` UTR hig - chr2R 9228009 3` UTR hig - chr2R_10_9225001 chr2R_9225001 RAL-502 864 chr2R 9331312 9331338 chr2R 9331401 9331437 15 98 1.5 4.5 3.0 3.8 125 chr2R 9331312 intron,intron CG13739 -,CG13954 - chr2R 9331374 intron,intron CG13739 -,CG13954 - chr2R 9331437 intron,intron CG13739 -,CG13954 - chr2R_15_9330001 chr2R_9330001 RAL-502 865 chr2R 9368113 9368143 chr2R 9368208 9368239 4 90 3.5 0.5 2.0 1.3 126 chr2R 9368113 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368239 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-502 866 chr2R 9412063 9412089 chr2R 9412194 9412219 6 130 9.5 2.5 6.0 0.9 156 chr2R 9412063 intron wun - chr2R 9412141 intron wun - chr2R 9412219 intron wun - chr2R_6_9410001 chr2R_9410001 RAL-502 867 chr2R 9480054 9480105 chr2R 9490605 9490656 roo 6 10551 5.0 2.0 3.5 1.3 10602 chr2R 9480054 intergenic not near genes chr2R 9485355 intergenic not near genes chr2R 9490656 intergenic not near genes chr2R_6_9485001 chr2R_9485001 RAL-502 868 chr2R 9510649 9510697 chr2R 9510784 9510833 8 135 1.5 2.0 1.8 2.9 184 chr2R 9510649 exon brp + chr2R 9510741 intron brp + chr2R 9510833 exon brp + chr2R_8_9510001 chr2R_9510001 RAL-502 869 chr2R 9541610 9541651 chr2R 9541703 9541748 10 96 0.0 4.0 2.0 3.3 138 chr2R 9541610 intergenic brp +,CG1888 - chr2R 9541679 intergenic brp +,CG1888 - chr2R 9541748 intergenic brp +,CG1888 - chr2R_10_9540001 chr2R_9540001 RAL-502 870 chr2R 9653248 9653279 chr2R 9653352 9653383 7 104 3.5 5.0 4.2 1.3 135 chr2R 9653248 intron Mmp2 - chr2R 9653316 intron Mmp2 - chr2R 9653383 intron Mmp2 - chr2R_7_9650001 chr2R_9650001 RAL-502 871 chr2R 9672032 9672074 chr2R 9672158 9672197 6 126 3.5 2.0 2.8 1.6 165 chr2R 9672032 intron Mmp2 - chr2R 9672114 intron Mmp2 - chr2R 9672197 intron Mmp2 - chr2R_6_9670001 chr2R_9670001 RAL-502 872 chr2R 9699412 9699431 chr2R 9699494 9699537 5 98 8.0 3.0 5.5 0.8 125 chr2R 9699412 intergenic not near genes chr2R 9699474 intergenic not near genes chr2R 9699537 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-502 873 chr2R 9707383 9707436 chr2R 9707484 9707537 24 99 8.0 5.5 6.8 3.1 154 chr2R 9707383 exon CG1773 + chr2R 9707460 3` UTR CG1773 + chr2R 9707537 3` UTR,5` UTR CG1773 +,CG10459 + chr2R_24_9705001 chr2R_9705001 RAL-502 874 chr2R 9718649 9718672 chr2R 9718724 9718772 8 93 0.5 2.0 1.2 3.6 123 chr2R 9718649 intron sqa - chr2R 9718710 intron sqa - chr2R 9718772 intron sqa - chr2R_8_9715001 chr2R_9715001 RAL-502 875 chr2R 9725032 9725081 chr2R 9725131 9725180 10 98 6.0 5.5 5.8 1.5 148 chr2R 9725032 intron sqa - chr2R 9725106 intron sqa - chr2R 9725180 intron sqa - chr2R_10_9725001 chr2R_9725001 RAL-502 876 chr2R 9726605 9726642 chr2R 9734175 9734213 17.6 5 7570 4.5 4.0 4.2 1.0 7608 chr2R 9726605 intron sqa - chr2R 9730409 intron sqa - chr2R 9734213 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-502 877 chr2R 9871022 9871074 chr2R 9871527 9871580 roo 21 502 2.5 3.5 3.0 5.2 558 chr2R 9871022 intron cbx - chr2R 9871301 intron cbx - chr2R 9871580 intron,5` UTR cbx -,CG18446 + chr2R_21_9870001 chr2R_9870001 RAL-502 878 chr2R 7071611 7071618 chr2R 9941240 9941244 6 2869611 5.5 18.5 12.0 0.5 2869633 chr2R 7071611 3` UTR CG12831 - chr2R 8506428 intron mtt - chr2R 9941244 intron Mef2 - chr2R_6_8505001 chr2R_8505001 RAL-502 879 chr2R 9945692 9945705 chr2R 9948490 9948494 6 2793 21.5 20.0 20.8 0.3 2802 chr2R 9945692 intron Mef2 - chr2R 9947093 intron Mef2 - chr2R 9948494 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-502 880 chr2R 9950276 9950327 chr2R 9950373 9950424 16 93 6.5 6.5 6.5 2.1 148 chr2R 9950276 intron Mef2 - chr2R 9950350 intron Mef2 - chr2R 9950424 intron Mef2 - chr2R_16_9950001 chr2R_9950001 RAL-502 881 chr2R 9998084 9998092 chr2R 9998198 9998206 4 114 2.5 6.5 4.5 0.7 122 chr2R 9998084 intron Pka-R2 - chr2R 9998145 intron Pka-R2 - chr2R 9998206 intron Pka-R2 - chr2R_4_9995001 chr2R_9995001 RAL-502 882 chr2R 10005546 10005578 chr2R 10005663 10005695 8 114 5.0 2.0 3.5 1.8 149 chr2R 10005546 intron Pka-R2 - chr2R 10005620 intron Pka-R2 - chr2R 10005695 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-502 883 chr2R 10005844 10005882 chr2R 10007013 10007022 1360 11 1159 3.5 1.5 2.5 3.1 1178 chr2R 10005844 intron Pka-R2 - chr2R 10006433 intron Pka-R2 - chr2R 10007022 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-502 884 chr2R 10044763 10044813 chr2R 10044863 10044916 26 100 5.0 5.0 5.0 4.3 153 chr2R 10044763 intron,5` UTR oys -,CR44295 + chr2R 10044840 intron,5` UTR oys -,CR44295 + chr2R 10044916 intron,5` UTR oys -,CR44295 + chr2R_26_10040001 chr2R_10040001 RAL-502 885 chr2R 10047804 10047836 chr2R 10047907 10047933 5 102 1.0 4.0 2.5 1.4 129 chr2R 10047804 intron oys - chr2R 10047868 intron oys - chr2R 10047933 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-502 886 chr2R 10053514 10053532 chr2R 10053631 10053652 7 120 5.5 2.5 4.0 1.4 138 chr2R 10053514 intron magu + chr2R 10053583 intron magu + chr2R 10053652 intron magu + chr2R_7_10050001 chr2R_10050001 RAL-502 887 chr2R 10107160 10107209 chr2R 10107267 10107316 7 106 7.0 6.5 6.8 0.9 156 chr2R 10107160 intron 14-3-3zeta + chr2R 10107238 intron 14-3-3zeta + chr2R 10107316 intron 14-3-3zeta + chr2R_7_10105001 chr2R_10105001 RAL-502 888 chr2R 10132198 10132216 chr2R 10132295 10132313 11 96 4.5 8.0 6.2 1.5 115 chr2R 10132198 intron gem + chr2R 10132256 intron gem + chr2R 10132313 exon gem + chr2R_11_10130001 chr2R_10130001 RAL-502 889 chr2R 10160885 10160909 chr2R 10161116 10161141 6 231 4.0 3.5 3.8 1.2 256 chr2R 10160885 intron KCNQ - chr2R 10161013 intron KCNQ - chr2R 10161141 intron KCNQ - chr2R_6_10160001 chr2R_10160001 RAL-502 890 chr2R 10172617 10172654 chr2R 10172749 10172780 16 130 4.5 0.0 2.2 5.0 163 chr2R 10172617 intron KCNQ - chr2R 10172698 intron KCNQ - chr2R 10172780 intron KCNQ - chr2R_16_10170001 chr2R_10170001 RAL-502 891 chr2R 10176865 10176903 chr2R 10186050 10186082 roo 5 9185 3.5 1.5 2.5 1.4 9217 chr2R 10176865 intron KCNQ - chr2R 10181474 intron KCNQ - chr2R 10186082 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-502 892 chr2R 10190449 10190470 chr2R 10190529 10190531 5 72 3.5 5.0 4.2 1.0 82 chr2R 10190449 intron KCNQ - chr2R 10190490 intron KCNQ - chr2R 10190531 intron KCNQ - chr2R_5_10190001 chr2R_10190001 RAL-502 893 chr2R 10203621 10203660 chr2R 10203726 10203765 5 105 5.0 2.5 3.8 1.0 144 chr2R 10203621 intergenic not near genes chr2R 10203693 intergenic not near genes chr2R 10203765 intergenic not near genes chr2R_5_10200001 chr2R_10200001 RAL-502 894 chr2R 10290099 10290126 chr2R 10290198 10290227 4 100 4.5 2.5 3.5 0.9 128 chr2R 10290099 intron CAP + chr2R 10290163 intron CAP + chr2R 10290227 intron CAP + chr2R_4_10290001 chr2R_10290001 RAL-502 895 chr2R 10313303 10313343 chr2R 10313411 10313450 12 106 1.0 5.0 3.0 3.0 147 chr2R 10313303 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313450 intergenic Ndg + chr2R_12_10310001 chr2R_10310001 RAL-502 896 chr2R 10318494 10318537 chr2R 10318600 10318643 13 105 1.5 2.0 1.8 4.6 149 chr2R 10318494 intron Ndg + chr2R 10318568 intron Ndg + chr2R 10318643 intron Ndg + chr2R_13_10315001 chr2R_10315001 RAL-502 897 chr2R 10352653 10352702 chr2R 10352749 10352799 11 92 3.5 2.5 3.0 2.8 146 chr2R 10352653 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352799 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-502 898 chr2R 10370507 10370526 chr2R 10370666 10370689 5 162 4.0 4.5 4.2 1.0 182 chr2R 10370507 intron CG42732 - chr2R 10370598 intron CG42732 - chr2R 10370689 intron CG42732 - chr2R_5_10370001 chr2R_10370001 RAL-502 899 chr2R 10411776 10411834 chr2R 10411884 10411934 9 105 0.0 3.5 1.8 3.2 158 chr2R 10411776 intron CG42732 - chr2R 10411855 intron CG42732 - chr2R 10411934 intron CG42732 - chr2R_9_10410001 chr2R_10410001 RAL-502 900 chr2R 10429003 10429053 chr2R 10429099 10429144 14 95 5.0 7.0 6.0 2.0 141 chr2R 10429003 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429144 intergenic not near genes chr2R_14_10425001 chr2R_10425001 RAL-502 901 chr2R 10436497 10436516 chr2R 10436601 10436617 5 103 3.0 0.0 1.5 2.0 120 chr2R 10436497 3` UTR RanBPM + chr2R 10436557 3` UTR RanBPM + chr2R 10436617 3` UTR CG12895 - chr2R_5_10435001 chr2R_10435001 RAL-502 902 chr2R 10440889 10440926 chr2R 10441011 10441048 17 122 7.0 0.5 3.8 3.5 159 chr2R 10440889 intron Galphao + chr2R 10440968 intron Galphao + chr2R 10441048 intron Galphao + chr2R_17_10440001 chr2R_10440001 RAL-502 903 chr2R 10452656 10452705 chr2R 10452780 10452828 14 118 2.5 2.0 2.2 4.4 172 chr2R 10452656 intron,intron Galphao +,Cyp49a1 - chr2R 10452742 intron,intron Galphao +,Cyp49a1 - chr2R 10452828 intron,intron Galphao +,Cyp49a1 - chr2R_14_10450001 chr2R_10450001 RAL-502 904 chr2R 10563546 10563582 chr2R 10563646 10563682 7 99 2.5 10.0 6.2 1.0 136 chr2R 10563546 intron psq + chr2R 10563614 intron psq + chr2R 10563682 intron psq + chr2R_7_10560001 chr2R_10560001 RAL-502 905 chr2R 10563905 10563925 chr2R 10564115 10564134 8 211 0.0 2.0 1.0 4.0 229 chr2R 10563905 intron psq + chr2R 10564020 intron psq + chr2R 10564134 intron psq + chr2R_8_10560001 chr2R_10560001 RAL-502 906 chr2R 10621239 10621249 chr2R 10621371 10621384 5 133 6.0 9.0 7.5 0.6 145 chr2R 10621239 intron CG11883 + chr2R 10621312 intron CG11883 + chr2R 10621384 intron CG11883 + chr2R_5_10620001 chr2R_10620001 RAL-502 907 chr2R 10658035 10658088 chr2R 10658147 10658185 18 110 5.0 5.0 5.0 3.0 150 chr2R 10658035 intergenic CR44452 - chr2R 10658110 intergenic not near genes chr2R 10658185 intergenic not near genes chr2R_18_10655001 chr2R_10655001 RAL-502 908 chr2R 10658911 10658924 chr2R 10659016 10659029 8 105 9.5 0.0 4.8 1.4 118 chr2R 10658911 intergenic not near genes chr2R 10658970 intergenic not near genes chr2R 10659029 intergenic not near genes chr2R_8_10655001 chr2R_10655001 RAL-502 909 chr2R 10690362 10690403 chr2R 10690459 10690501 12 94 5.5 4.5 5.0 2.0 139 chr2R 10690362 intron stan + chr2R 10690432 intron stan + chr2R 10690501 intron stan + chr2R_12_10690001 chr2R_10690001 RAL-502 910 chr2R 10757674 10757712 chr2R 10757781 10757819 12 103 0.0 3.0 1.5 4.8 145 chr2R 10757674 intron CG33144 - chr2R 10757746 intron CG33144 - chr2R 10757819 intron CG33144 - chr2R_12_10755001 chr2R_10755001 RAL-502 911 chr2R 10758773 10758827 chr2R 10758892 10758939 18 115 3.5 8.5 6.0 2.6 166 chr2R 10758773 intron CG33144 - chr2R 10758856 intron CG33144 - chr2R 10758939 intron CG33144 - chr2R_18_10755001 chr2R_10755001 RAL-502 912 chr2R 10851176 10851211 chr2R 10851269 10851316 9 103 2.5 3.5 3.0 2.2 140 chr2R 10851176 intron CG30015 - chr2R 10851246 intron CG30015 - chr2R 10851316 intron CG30015 - chr2R_9_10850001 chr2R_10850001 RAL-502 913 chr2R 10860578 10860589 chr2R 10860670 10860685 7 93 0.0 2.5 1.2 3.2 107 chr2R 10860578 intron CG30015 - chr2R 10860632 intron CG30015 - chr2R 10860685 intron CG30015 - chr2R_7_10860001 chr2R_10860001 RAL-502 914 chr2R 10862552 10862594 chr2R 10862683 10862725 5 129 4.0 2.5 3.2 1.2 173 chr2R 10862552 intron CG30015 - chr2R 10862638 intron CG30015 - chr2R 10862725 intron CG30015 - chr2R_5_10860001 chr2R_10860001 RAL-502 915 chr2R 10948013 10948056 chr2R 10955582 10955627 17.6 14 7560 2.0 4.5 3.2 3.3 7614 chr2R 10948013 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955627 intergenic not near genes chr2R_14_10950001 chr2R_10950001 RAL-502 916 chr2R 10959087 10959099 chr2R 10959175 10959196 6 92 0.0 0.5 0.2 5.0 109 chr2R 10959087 intergenic not near genes chr2R 10959142 intergenic not near genes chr2R 10959196 intergenic not near genes chr2R_6_10955001 chr2R_10955001 RAL-502 917 chr2R 11009813 11009843 chr2R 11018996 11019029 roo 9 9178 4.0 8.0 6.0 1.3 9216 chr2R 11009813 intron luna - chr2R 11014421 intron luna - chr2R 11019029 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-502 918 chr2R 11019873 11019894 chr2R 11024942 11024948 jockey 4 5068 7.0 5.0 6.0 0.6 5075 chr2R 11019873 intron luna - chr2R 11022410 intron luna - chr2R 11024948 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-502 919 chr2R 11097353 11097388 chr2R 11097470 11097503 12 120 1.5 6.0 3.8 2.5 150 chr2R 11097353 intron luna - chr2R 11097428 intron luna - chr2R 11097503 intron luna - chr2R_12_11095001 chr2R_11095001 RAL-502 920 chr2R 11150541 11150825 chr2R 11150647 11150921 22 102 4.0 5.5 4.8 3.8 380 chr2R 11150541 intron CG13229 - chr2R 11150731 intron CG13229 - chr2R 11150921 intron CG13229 - chr2R_22_11150001 chr2R_11150001 RAL-502 921 chr2R 11179249 11179288 chr2R 11179355 11179394 9 104 4.5 6.0 5.2 1.5 145 chr2R 11179249 intron shn + chr2R 11179322 intron shn + chr2R 11179394 intron shn + chr2R_9_11175001 chr2R_11175001 RAL-502 922 chr2R 11207808 11207828 chr2R 11208021 11208041 BS 5 213 11.5 4.5 8.0 0.6 233 chr2R 11207808 intron shn + chr2R 11207924 intron shn + chr2R 11208041 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-502 923 chr2R 11207833 11207845 chr2R 11208019 11208053 BS 6 205 8.0 4.5 6.2 0.8 220 chr2R 11207833 intron shn + chr2R 11207943 intron shn + chr2R 11208053 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-502 924 chr2R 11250079 11250092 chr2R 11250257 11250270 4 178 9.0 4.0 6.5 0.5 191 chr2R 11250079 intergenic CG43112 +,Or47a + chr2R 11250174 intergenic Or47a +,CG43112 + chr2R 11250270 intergenic Or47a +,CG43112 + chr2R_4_11250001 chr2R_11250001 RAL-502 925 chr2R 11263831 11263839 chr2R 11263963 11263974 4 135 0.0 10.5 5.2 0.6 143 chr2R 11263831 intergenic not near genes chr2R 11263902 intergenic not near genes chr2R 11263974 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-502 926 chr2R 11265715 11265744 chr2R 11265811 11265819 6 94 3.5 0.0 1.8 2.1 104 chr2R 11265715 exon Cpr47Ee + chr2R 11265767 intron Cpr47Ee + chr2R 11265819 intron Cpr47Ee + chr2R_6_11265001 chr2R_11265001 RAL-502 927 chr2R 11274293 11274331 chr2R 11274503 11274549 8 210 2.5 2.5 2.5 2.3 256 chr2R 11274293 intron TpnC47D - chr2R 11274421 intron TpnC47D - chr2R 11274549 intron TpnC47D - chr2R_8_11270001 chr2R_11270001 RAL-502 928 chr2R 11292957 11293002 chr2R 11293053 11293119 9 101 3.5 0.0 1.8 3.2 162 chr2R 11292957 exon,3` UTR dare -,CG30033 + chr2R 11293038 5` UTR,3` UTR dare -,CG30033 + chr2R 11293119 5` UTR,3` UTR dare -,CG30033 + chr2R_9_11290001 chr2R_11290001 RAL-502 929 chr2R 11297626 11297639 chr2R 11301960 11301980 flea 4 4339 5.5 0.0 2.8 1.1 4354 chr2R 11297626 intergenic CG42336 - chr2R 11299803 intergenic not near genes chr2R 11301980 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-502 930 chr2R 11366164 11366178 chr2R 11366257 11366277 7 96 6.0 5.0 5.5 1.1 113 chr2R 11366164 intergenic not near genes chr2R 11366220 intergenic CG13204 + chr2R 11366277 intergenic CG13204 + chr2R_7_11365001 chr2R_11365001 RAL-502 931 chr2R 11368009 11368060 chr2R 11368105 11368156 15 95 1.5 2.0 1.8 5.4 147 chr2R 11368009 intron CG13204 + chr2R 11368082 intron CG13204 + chr2R 11368156 intron CG13204 + chr2R_15_11365001 chr2R_11365001 RAL-502 932 chr2R 11415536 11415549 chr2R 11418689 11418717 opus 5 3165 5.5 13.0 9.2 0.5 3181 chr2R 11415536 intron Drip - chr2R 11417126 intron Drip - chr2R 11418717 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-502 933 chr2R 11425661 11425679 chr2R 11425761 11425779 5 100 0.0 6.5 3.2 1.2 118 chr2R 11425661 intron Drip - chr2R 11425720 intron Drip - chr2R 11425779 intron Drip - chr2R_5_11425001 chr2R_11425001 RAL-502 934 chr2R 11428911 11428941 chr2R 11429011 11429031 10 97 7.0 7.0 7.0 1.2 120 chr2R 11428911 intron Drip - chr2R 11428971 intron Drip - chr2R 11429031 intron Drip - chr2R_10_11425001 chr2R_11425001 RAL-502 935 chr2R 11472628 11472680 chr2R 11473845 11473894 pogo 16 1215 4.5 8.0 6.2 2.2 1266 chr2R 11472628 intergenic not near genes chr2R 11473261 intergenic not near genes chr2R 11473894 intergenic not near genes chr2R_16_11470001 chr2R_11470001 RAL-502 936 chr2R 11538283 11538321 chr2R 11538403 11538441 19 120 3.5 4.0 3.8 4.0 158 chr2R 11538283 intergenic not near genes chr2R 11538362 intergenic not near genes chr2R 11538441 intergenic not near genes chr2R_19_11535001 chr2R_11535001 RAL-502 937 chr2R 11555406 11555423 chr2R 11555760 11555778 5 355 1.0 6.0 3.5 1.1 372 chr2R 11555406 intergenic not near genes chr2R 11555592 intergenic not near genes chr2R 11555778 intergenic not near genes chr2R_5_11555001 chr2R_11555001 RAL-502 938 chr2R 11631378 11631405 chr2R 11631478 11631505 8 99 0.0 2.0 1.0 4.0 127 chr2R 11631378 intron CG9005 - chr2R 11631442 intron CG9005 - chr2R 11631505 intron CG9005 - chr2R_8_11630001 chr2R_11630001 RAL-502 939 chr2R 11660347 11660390 chr2R 11660484 11660522 6 136 0.5 1.0 0.8 3.3 175 chr2R 11660347 intron Roc2 - chr2R 11660434 intron Roc2 - chr2R 11660522 intron Roc2 - chr2R_6_11660001 chr2R_11660001 RAL-502 940 chr2R 11667362 11667399 chr2R 11667476 11667513 12 113 2.5 4.5 3.5 2.7 151 chr2R 11667362 intron,intron Roc2 -,Tret1-1 + chr2R 11667438 intron,intron Roc2 -,Tret1-1 + chr2R 11667513 intron,intron Roc2 -,Tret1-1 + chr2R_12_11665001 chr2R_11665001 RAL-502 941 chr2R 11672834 11672845 chr2R 11672941 11672948 4 106 6.5 5.5 6.0 0.6 114 chr2R 11672834 intron,exon Roc2 -,Tret1-1 + chr2R 11672891 intron,intron Roc2 -,Tret1-1 + chr2R 11672948 intron,intron Roc2 -,Tret1-1 + chr2R_4_11670001 chr2R_11670001 RAL-502 942 chr2R 11724151 11724184 chr2R 11724254 11724288 8 106 2.5 4.0 3.2 1.9 137 chr2R 11724151 intron pyr + chr2R 11724220 intron pyr + chr2R 11724288 intron pyr + chr2R_8_11720001 chr2R_11720001 RAL-502 943 chr2R 11742018 11742055 chr2R 11742252 11742272 6 225 5.5 3.5 4.5 1.1 254 chr2R 11742018 intergenic not near genes chr2R 11742145 intergenic not near genes chr2R 11742272 intergenic not near genes chr2R_6_11740001 chr2R_11740001 RAL-502 944 chr2R 11822984 11823005 chr2R 11823069 11823082 6 92 0.0 7.5 3.8 1.2 98 chr2R 11822984 intergenic not near genes chr2R 11823033 intergenic not near genes chr2R 11823082 intergenic not near genes chr2R_6_11820001 chr2R_11820001 RAL-502 945 chr2R 11826869 11826915 chr2R 11827001 11827047 11 131 1.0 2.0 1.5 4.4 178 chr2R 11826869 3` UTR CG13192 + chr2R 11826958 3` UTR CG13192 + chr2R 11827047 3` UTR CG13192 + chr2R_11_11825001 chr2R_11825001 RAL-502 946 chr2R 11829054 11829079 chr2R 11829192 11829217 10 136 4.0 7.5 5.8 1.5 163 chr2R 11829054 exon Sobp - chr2R 11829136 intron Sobp - chr2R 11829217 intron Sobp - chr2R_10_11825001 chr2R_11825001 RAL-502 947 chr2R 11863840 11863880 chr2R 11863947 11863986 6 106 3.0 2.5 2.8 1.6 146 chr2R 11863840 intergenic CG42531 + chr2R 11863913 intergenic CG42531 + chr2R 11863986 intergenic CG42531 + chr2R_6_11860001 chr2R_11860001 RAL-502 948 chr2R 11932716 11932753 chr2R 11933007 11933044 10 291 4.5 7.0 5.8 1.5 328 chr2R 11932716 intergenic not near genes chr2R 11932880 intergenic not near genes chr2R 11933044 intergenic not near genes chr2R_10_11930001 chr2R_11930001 RAL-502 949 chr2R 11951329 11951368 chr2R 11951426 11951464 12 96 2.0 1.0 1.5 4.8 135 chr2R 11951329 intron CG13188 + chr2R 11951396 intron CG13188 + chr2R 11951464 intron CG13188 + chr2R_12_11950001 chr2R_11950001 RAL-502 950 chr2R 8518782 8518783 chr2R 12066172 12066199 4 3547398 15.0 12.5 13.8 0.3 3547417 chr2R 8518782 intron mtt - chr2R 10292490 intron CAP + chr2R 12066199 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-502 951 chr2R 12093930 12093980 chr2R 12094063 12094112 11 132 6.0 2.0 4.0 2.2 182 chr2R 12093930 intron jeb - chr2R 12094021 intron jeb - chr2R 12094112 intron jeb - chr2R_11_12090001 chr2R_12090001 RAL-502 952 chr2R 12185992 12186037 chr2R 12186101 12186138 21 110 3.0 7.5 5.2 3.4 146 chr2R 12185992 intron Cyp6g1 + chr2R 12186065 intron Cyp6g1 + chr2R 12186138 intron Cyp6g1 + chr2R_21_12185001 chr2R_12185001 RAL-502 953 chr2R 12185222 12185237 chr2R 12188127 12188143 11 2906 31.0 137.5 84.2 0.1 2921 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186682 exon Cyp6g1 + chr2R 12188143 3` UTR Cyp6g1 + chr2R_11_12185001 chr2R_12185001 RAL-502 954 chr2R 12187475 12187495 chr2R 12190081 12190094 9 2601 67.5 73.0 70.2 0.1 2619 chr2R 12187475 exon Cyp6g1 + chr2R 12188784 exon Cyp6g2 - chr2R 12190094 exon Cyp6g2 - chr2R_9_12185001 chr2R_12185001 RAL-502 955 chr2R 12187474 12187526 chr2R 12190101 12190124 22 2622 92.0 70.5 81.2 0.3 2650 chr2R 12187474 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_22_12185001 chr2R_12185001 RAL-502 956 chr2R 12217561 12217600 chr2R 12217658 12217701 15 96 5.0 6.0 5.5 2.3 140 chr2R 12217561 intergenic not near genes chr2R 12217631 intergenic not near genes chr2R 12217701 intergenic not near genes chr2R_15_12215001 chr2R_12215001 RAL-502 957 chr2R 12334869 12334883 chr2R 12334965 12334981 6 97 4.5 4.0 4.2 1.2 112 chr2R 12334869 intergenic CG8490 + chr2R 12334925 intergenic CG8490 + chr2R 12334981 intergenic CG8490 + chr2R_6_12330001 chr2R_12330001 RAL-502 958 chr2R 12363365 12363415 chr2R 12363817 12363850 17 449 6.5 0.0 3.2 4.0 485 chr2R 12363365 intergenic CG30043 + chr2R 12363608 intergenic CG30043 + chr2R 12363850 intergenic not near genes chr2R_17_12360001 chr2R_12360001 RAL-502 959 chr2R 12481148 12481168 chr2R 12482948 12482992 roo 5 1809 3.5 6.5 5.0 0.8 1844 chr2R 12481148 exon Dh44-R2 + chr2R 12482070 intron Dh44-R2 + chr2R 12482992 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-502 960 chr2R 12536109 12536156 chr2R 12536287 12536334 18 177 3.5 6.0 4.8 3.1 225 chr2R 12536109 intron fra + chr2R 12536222 intron fra + chr2R 12536334 intron fra + chr2R_18_12535001 chr2R_12535001 RAL-502 961 chr2R 12565568 12565597 chr2R 12565970 12566000 9 402 0.0 6.5 3.2 2.1 432 chr2R 12565568 intergenic not near genes chr2R 12565784 intergenic Cyp301a1 + chr2R 12566000 intergenic Cyp301a1 + chr2R_9_12565001 chr2R_12565001 RAL-502 962 chr2R 12627490 12627501 chr2R 12627580 12627610 5 107 0.0 4.5 2.2 1.6 120 chr2R 12627490 intron CG17760 + chr2R 12627550 intron CG17760 + chr2R 12627610 exon CG17760 + chr2R_5_12625001 chr2R_12625001 RAL-502 963 chr2R 12643774 12643814 chr2R 12643870 12643892 5 92 0.0 2.0 1.0 2.5 118 chr2R 12643774 intron CG8785 - chr2R 12643833 intron CG8785 - chr2R 12643892 exon CG8785 - chr2R_5_12640001 chr2R_12640001 RAL-502 964 chr2R 12707510 12707549 chr2R 12715895 12715935 roo 7 8386 0.0 3.0 1.5 2.8 8425 chr2R 12707510 intron CG42663 + chr2R 12711722 intron CG42663 + chr2R 12715935 intron CG42663 + chr2R_7_12710001 chr2R_12710001 RAL-502 965 chr2R 12739123 12739146 chr2R 12739217 12739241 4 94 7.0 5.0 6.0 0.6 118 chr2R 12739123 intron CG42663 + chr2R 12739182 intron CG42663 + chr2R 12739241 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-502 966 chr2R 12789288 12789325 chr2R 12797657 12797673 roo 4 8360 2.5 3.0 2.8 1.1 8385 chr2R 12789288 intron,3` UTR sca +,CR45137 - chr2R 12793480 intron,intron sca +,CR45137 - chr2R 12797673 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-502 967 chr2R 12808303 12808306 chr2R 12808418 12808421 4 115 10.5 5.5 8.0 0.4 118 chr2R 12808303 intergenic CG17580 + chr2R 12808362 intergenic not near genes chr2R 12808421 intergenic not near genes chr2R_4_12805001 chr2R_12805001 RAL-502 968 chr2R 12808307 12808347 chr2R 12808411 12808462 13 111 3.0 4.0 3.5 2.9 155 chr2R 12808307 intergenic CG17580 + chr2R 12808384 intergenic not near genes chr2R 12808462 intergenic not near genes chr2R_13_12805001 chr2R_12805001 RAL-502 969 chr2R 12819451 12819476 chr2R 12824536 12824555 jockey 4 5083 2.0 5.0 3.5 0.9 5104 chr2R 12819451 intergenic not near genes chr2R 12822003 intergenic not near genes chr2R 12824555 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-502 970 chr2R 12844691 12844736 chr2R 12844800 12844846 10 110 2.5 4.5 3.5 2.2 155 chr2R 12844691 3` UTR Or49b + chr2R 12844768 intergenic Or49b + chr2R 12844846 intergenic Or49b + chr2R_10_12840001 chr2R_12840001 RAL-502 971 chr2R 12870258 12870287 chr2R 12870403 12870407 5 137 14.0 17.5 15.8 0.3 149 chr2R 12870258 5` UTR bic + chr2R 12870332 intron bic + chr2R 12870407 exon bic + chr2R_5_12870001 chr2R_12870001 RAL-502 972 chr2R 12892324 12892346 chr2R 12892420 12892441 5 95 5.5 5.0 5.2 0.8 117 chr2R 12892324 intron vg + chr2R 12892382 intron vg + chr2R 12892441 intron vg + chr2R_5_12890001 chr2R_12890001 RAL-502 973 chr2R 12982112 12982122 chr2R 12982274 12982296 4 171 1.5 3.0 2.2 1.2 184 chr2R 12982112 intergenic not near genes chr2R 12982204 intergenic not near genes chr2R 12982296 intergenic not near genes chr2R_4_12980001 chr2R_12980001 RAL-502 974 chr2R 13043036 13043063 chr2R 13043136 13043162 5 99 0.0 1.5 0.8 2.8 126 chr2R 13043036 intergenic not near genes chr2R 13043099 intergenic not near genes chr2R 13043162 intergenic not near genes chr2R_5_13040001 chr2R_13040001 RAL-502 975 chr2R 13078867 13078896 chr2R 13078973 13079002 7 106 3.5 4.0 3.8 1.5 135 chr2R 13078867 intron Drl-2 - chr2R 13078934 intron Drl-2 - chr2R 13079002 intron Drl-2 - chr2R_7_13075001 chr2R_13075001 RAL-502 976 chr2R 13089735 13089782 chr2R 13089862 13089867 9 117 3.0 4.5 3.8 1.9 132 chr2R 13089735 intergenic not near genes chr2R 13089801 intergenic not near genes chr2R 13089867 intergenic not near genes chr2R_9_13085001 chr2R_13085001 RAL-502 977 chr2R 13136830 13136866 chr2R 13141646 13141683 Doc 18 4816 5.5 2.5 4.0 3.6 4853 chr2R 13136830 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141683 intron Cap-G + chr2R_18_13135001 chr2R_13135001 RAL-502 978 chr2R 13162761 13162782 chr2R 13162860 13162886 9 103 7.5 0.0 3.8 1.9 125 chr2R 13162761 3` UTR Nrk + chr2R 13162824 3` UTR Nrk + chr2R 13162886 3` UTR Nrk + chr2R_9_13160001 chr2R_13160001 RAL-502 979 chr2R 13167414 13167432 chr2R 13167528 13167546 4 114 7.5 0.0 3.8 0.8 132 chr2R 13167414 intron GLaz - chr2R 13167480 intron GLaz - chr2R 13167546 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-502 980 chr2R 13249564 13249593 chr2R 13249672 13249698 11 105 4.5 1.0 2.8 2.9 134 chr2R 13249564 intron CG4712 - chr2R 13249631 intron CG4712 - chr2R 13249698 intron CG4712 - chr2R_11_13245001 chr2R_13245001 RAL-502 981 chr2R 13309654 13309678 chr2R 13309787 13309816 9 137 2.5 1.5 2.0 3.0 162 chr2R 13309654 intergenic not near genes chr2R 13309735 intergenic not near genes chr2R 13309816 intergenic not near genes chr2R_9_13305001 chr2R_13305001 RAL-502 982 chr2R 13359453 13359505 chr2R 13360135 13360169 13 675 6.0 2.5 4.2 2.5 716 chr2R 13359453 intergenic not near genes chr2R 13359811 intergenic not near genes chr2R 13360169 intergenic not near genes chr2R_13_13355001 chr2R_13355001 RAL-502 983 chr2R 13383088 13383123 chr2R 13383179 13383219 7 95 2.0 3.5 2.8 1.8 131 chr2R 13383088 intergenic not near genes chr2R 13383154 intergenic not near genes chr2R 13383219 intergenic not near genes chr2R_7_13380001 chr2R_13380001 RAL-502 984 chr2R 13439089 13439140 chr2R 13439224 13439274 14 130 3.0 4.5 3.8 2.9 185 chr2R 13439089 intergenic CG42321 -,cnn - chr2R 13439182 intergenic CG42321 -,cnn - chr2R 13439274 intergenic cnn -,CG42321 - chr2R_14_13435001 chr2R_13435001 RAL-502 985 chr2R 13532503 13532538 chr2R 13532639 13532674 10 135 0.5 2.5 1.5 4.0 171 chr2R 13532503 intron Vmat - chr2R 13532588 intron Vmat - chr2R 13532674 intron Vmat - chr2R_10_13530001 chr2R_13530001 RAL-502 986 chr2R 13547068 13547094 chr2R 13547281 13547308 6 214 5.0 3.0 4.0 1.2 240 chr2R 13547068 intron CG6145 - chr2R 13547188 intron CG6145 - chr2R 13547308 intron CG6145 - chr2R_6_13545001 chr2R_13545001 RAL-502 987 chr2R 13580496 13580521 chr2R 13580852 13580891 jockey 8 365 4.0 5.5 4.8 1.4 395 chr2R 13580496 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580891 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-502 988 chr2R 13684251 13684272 chr2R 13684348 13684370 10 98 3.0 2.0 2.5 2.9 119 chr2R 13684251 intron fas + chr2R 13684310 intron fas + chr2R 13684370 intron fas + chr2R_10_13680001 chr2R_13680001 RAL-502 989 chr2R 13692308 13692334 chr2R 13692412 13692430 10 102 5.0 6.0 5.5 1.5 122 chr2R 13692308 intron,intron fas +,CG6220 - chr2R 13692369 intron,intron fas +,CG6220 - chr2R 13692430 intron,intron fas +,CG6220 - chr2R_10_13690001 chr2R_13690001 RAL-502 990 chr2R 13694614 13694655 chr2R 13694703 13694752 11 95 1.0 1.5 1.2 5.0 138 chr2R 13694614 intron fas + chr2R 13694683 intron fas + chr2R 13694752 intron fas + chr2R_11_13690001 chr2R_13690001 RAL-502 991 chr2R 13727842 13727848 chr2R 13727941 13727955 4 102 7.5 15.5 11.5 0.3 113 chr2R 13727842 intron fas + chr2R 13727898 intron fas + chr2R 13727955 intron fas + chr2R_4_13725001 chr2R_13725001 RAL-502 992 chr2R 13728114 13728157 chr2R 13735791 13735834 opus 10 7676 9.0 3.0 6.0 1.4 7720 chr2R 13728114 intron fas + chr2R 13731974 intron fas + chr2R 13735834 intron fas + chr2R_10_13730001 chr2R_13730001 RAL-502 993 chr2R 13749490 13749529 chr2R 13749597 13749638 16 108 6.5 8.0 7.2 2.0 148 chr2R 13749490 intergenic fas + chr2R 13749564 intergenic fas + chr2R 13749638 intergenic fas + chr2R_16_13745001 chr2R_13745001 RAL-502 994 chr2R 13768975 13769000 chr2R 13769082 13769119 7 113 3.5 9.0 6.2 1.0 144 chr2R 13768975 intergenic not near genes chr2R 13769047 intergenic not near genes chr2R 13769119 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-502 995 chr2R 13793132 13793159 chr2R 13793228 13793255 5 86 4.5 5.0 4.8 0.9 123 chr2R 13793132 intergenic not near genes chr2R 13793194 intergenic not near genes chr2R 13793255 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-502 996 chr2R 13817677 13817687 chr2R 13817779 13817789 4 102 1.0 2.0 1.5 1.6 112 chr2R 13817677 intron stj + chr2R 13817733 intron stj + chr2R 13817789 intron stj + chr2R_4_13815001 chr2R_13815001 RAL-502 997 chr2R 13822732 13822778 chr2R 13822819 13822841 4 79 3.0 5.0 4.0 0.8 109 chr2R 13822732 intron fl(2)d - chr2R 13822786 intron fl(2)d - chr2R 13822841 intron fl(2)d - chr2R_4_13820001 chr2R_13820001 RAL-502 998 chr2R 13905583 13905624 chr2R 13907583 13907621 Rt1a 10 1993 4.5 4.0 4.2 1.9 2038 chr2R 13905583 intron shot - chr2R 13906602 intron shot - chr2R 13907621 intron shot - chr2R_10_13905001 chr2R_13905001 RAL-502 999 chr2R 14000211 14000264 chr2R 14000459 14000508 7 246 2.0 1.0 1.5 2.8 297 chr2R 14000211 intron mam + chr2R 14000360 intron mam + chr2R 14000508 intron mam + chr2R_7_14000001 chr2R_14000001 RAL-502 1000 chr2R 14018142 14018187 chr2R 14018239 14018291 7 101 3.0 2.5 2.8 1.8 149 chr2R 14018142 intron mam + chr2R 14018216 intron mam + chr2R 14018291 intron mam + chr2R_7_14015001 chr2R_14015001 RAL-502 1001 chr2R 14093415 14093426 chr2R 14109586 14109597 7 16170 11.0 0.5 5.8 1.0 16182 chr2R 14093415 intron Prosap - chr2R 14101506 intron Prosap - chr2R 14109597 intron Prosap - chr2R_7_14100001 chr2R_14100001 RAL-502 1002 chr2R 14142425 14142470 chr2R 14142534 14142580 9 109 7.0 4.5 5.8 1.3 155 chr2R 14142425 intergenic not near genes chr2R 14142502 intergenic not near genes chr2R 14142580 intergenic not near genes chr2R_9_14140001 chr2R_14140001 RAL-502 1003 chr2R 14277560 14277611 chr2R 14277661 14277707 20 99 5.0 5.5 5.2 3.2 147 chr2R 14277560 5` UTR Ih + chr2R 14277634 5` UTR Ih + chr2R 14277707 5` UTR Ih + chr2R_20_14275001 chr2R_14275001 RAL-502 1004 chr2R 14294812 14294861 chr2R 14294911 14294960 24 98 5.5 6.5 6.0 3.4 148 chr2R 14294812 intron Ih + chr2R 14294886 intron Ih + chr2R 14294960 intron Ih + chr2R_24_14290001 chr2R_14290001 RAL-502 1005 chr2R 14393845 14393890 chr2R 14393949 14393989 10 98 6.5 4.0 5.2 1.6 144 chr2R 14393845 intergenic not near genes chr2R 14393917 intergenic not near genes chr2R 14393989 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-502 1006 chr2R 14394209 14394225 chr2R 14399017 14399033 Doc 6 4808 9.0 2.5 5.8 0.9 4824 chr2R 14394209 intergenic not near genes chr2R 14396621 intergenic not near genes chr2R 14399033 intergenic not near genes chr2R_6_14395001 chr2R_14395001 RAL-502 1007 chr2R 14400522 14400549 chr2R 14400616 14400648 16 97 1.0 8.5 4.8 2.8 126 chr2R 14400522 intergenic not near genes chr2R 14400585 intergenic not near genes chr2R 14400648 intergenic not near genes chr2R_16_14400001 chr2R_14400001 RAL-502 1008 chr2R 14427211 14427256 chr2R 14427310 14427355 9 99 1.5 2.0 1.8 3.2 144 chr2R 14427211 intergenic phyl - chr2R 14427283 intergenic phyl - chr2R 14427355 3` UTR phyl - chr2R_9_14425001 chr2R_14425001 RAL-502 1009 chr2R 14432440 14432462 chr2R 14432548 14432570 6 108 2.0 0.5 1.2 2.7 130 chr2R 14432440 intergenic phyl - chr2R 14432505 intergenic phyl - chr2R 14432570 intergenic phyl - chr2R_6_14430001 chr2R_14430001 RAL-502 1010 chr2R 14467303 14467310 chr2R 14476477 14476483 roo 6 9176 5.5 10.0 7.8 0.7 9180 chr2R 14467303 intergenic not near genes chr2R 14471893 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-502 1011 chr2R 14467312 14467327 chr2R 14476476 14476505 roo 12 9173 3.0 10.0 6.5 1.6 9193 chr2R 14467312 intergenic not near genes chr2R 14471908 intergenic not near genes chr2R 14476505 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-502 1012 chr2R 14497374 14497417 chr2R 14498555 14498599 1360 4 1182 0.0 2.0 1.0 2.0 1225 chr2R 14497374 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498599 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-502 1013 chr2R 14547674 14547720 chr2R 14547778 14547808 6 100 10.0 8.5 9.2 0.6 134 chr2R 14547674 intron ttv + chr2R 14547741 intron ttv + chr2R 14547808 intron ttv + chr2R_6_14545001 chr2R_14545001 RAL-502 1014 chr2R 14565542 14565593 chr2R 14565639 14565687 17 96 7.5 4.0 5.8 2.5 145 chr2R 14565542 intron ttv + chr2R 14565614 intron ttv + chr2R 14565687 intron ttv + chr2R_17_14565001 chr2R_14565001 RAL-502 1015 chr2R 14659311 14659332 chr2R 14659408 14659431 9 98 16.0 4.5 10.2 0.8 120 chr2R 14659311 intergenic not near genes chr2R 14659371 intergenic not near genes chr2R 14659431 intergenic not near genes chr2R_9_14655001 chr2R_14655001 RAL-502 1016 chr2R 14786015 14786063 chr2R 14786128 14786176 13 112 0.0 4.0 2.0 4.3 161 chr2R 14786015 intron kn - chr2R 14786096 intron kn - chr2R 14786176 intron kn - chr2R_13_14785001 chr2R_14785001 RAL-502 1017 chr2R 14855020 14855048 chr2R 14855133 14855158 4 112 7.0 0.0 3.5 0.9 138 chr2R 14855020 5` UTR Ciao1 - chr2R 14855089 intergenic Ciao1 -,HPS1 + chr2R 14855158 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-502 1018 chr2R 14889192 14889213 chr2R 14897818 14897837 Max-element 12 8627 12.5 0.5 6.5 1.6 8645 chr2R 14889192 intergenic Cyp6a8 - chr2R 14893514 intergenic not near genes chr2R 14897837 intergenic not near genes chr2R_12_14890001 chr2R_14890001 RAL-502 1019 chr2R 14906469 14906517 chr2R 14906597 14906645 17 126 3.0 3.5 3.2 4.0 176 chr2R 14906469 intron CG10249 - chr2R 14906557 intron CG10249 - chr2R 14906645 intron CG10249 - chr2R_17_14905001 chr2R_14905001 RAL-502 1020 chr2R 14911683 14911724 chr2R 14911826 14911867 15 142 3.0 3.5 3.2 3.6 184 chr2R 14911683 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911867 intron CG10249 - chr2R_15_14910001 chr2R_14910001 RAL-502 1021 chr2R 14917838 14917850 chr2R 14917943 14917955 5 105 7.0 3.0 5.0 0.8 117 chr2R 14917838 intron CG10249 - chr2R 14917896 intron CG10249 - chr2R 14917955 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-502 1022 chr2R 14917856 14917873 chr2R 14917942 14917978 4 99 5.5 3.0 4.2 0.8 122 chr2R 14917856 intron CG10249 - chr2R 14917917 intron CG10249 - chr2R 14917978 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-502 1023 chr2R 14922126 14922168 chr2R 14922222 14922262 14 94 7.0 4.5 5.8 2.1 136 chr2R 14922126 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922262 intron CG10249 - chr2R_14_14920001 chr2R_14920001 RAL-502 1024 chr2R 14985438 14985457 chr2R 14985534 14985553 7 93 3.5 1.5 2.5 2.0 115 chr2R 14985438 intron pcs + chr2R 14985496 intron pcs + chr2R 14985553 intron pcs + chr2R_7_14985001 chr2R_14985001 RAL-502 1025 chr2R 14985464 14985481 chr2R 14985530 14985573 6 88 2.0 1.5 1.8 2.1 109 chr2R 14985464 intron pcs + chr2R 14985518 intron pcs + chr2R 14985573 intron pcs + chr2R_6_14985001 chr2R_14985001 RAL-502 1026 chr2R 14998495 14998505 chr2R 14998655 14998665 4 160 4.0 3.5 3.8 0.8 170 chr2R 14998495 intergenic not near genes chr2R 14998580 intergenic not near genes chr2R 14998665 intergenic not near genes chr2R_4_14995001 chr2R_14995001 RAL-502 1027 chr2R 15004711 15004754 chr2R 15005060 15005101 jockey 10 348 4.5 7.0 5.8 1.5 390 chr2R 15004711 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005101 intergenic not near genes chr2R_10_15000001 chr2R_15000001 RAL-502 1028 chr2R 15015446 15015490 chr2R 15022890 15022928 mdg1 14 7439 3.5 4.5 4.0 2.8 7482 chr2R 15015446 intron hbs + chr2R 15019187 intron hbs + chr2R 15022928 intron hbs + chr2R_14_15015001 chr2R_15015001 RAL-502 1029 chr2R 15027477 15027515 chr2R 15027574 15027609 12 102 6.5 3.5 5.0 2.0 132 chr2R 15027477 intron hbs + chr2R 15027543 intron hbs + chr2R 15027609 intron hbs + chr2R_12_15025001 chr2R_15025001 RAL-502 1030 chr2R 15119301 15119345 chr2R 15127802 15127820 Tirant 6 8490 4.0 7.0 5.5 0.9 8519 chr2R 15119301 intron chn + chr2R 15123560 intron chn + chr2R 15127820 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-502 1031 chr2R 15295268 15295397 chr2R 15295397 15295498 4 135 0.0 0.0 0.0 4.0 230 chr2R 15295268 intron Trpm - chr2R 15295383 intron Trpm - chr2R 15295498 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-502 1032 chr2R 15374791 15375063 chr2R 15374894 15375193 6 119 9.0 2.0 5.5 0.9 402 chr2R 15374791 intergenic not near genes chr2R 15374992 intergenic not near genes chr2R 15375193 intergenic not near genes chr2R_6_15370001 chr2R_15370001 RAL-502 1033 chr2R 15375073 15375079 chr2R 15375185 15375204 4 124 7.0 1.5 4.2 0.8 131 chr2R 15375073 intergenic not near genes chr2R 15375138 intergenic not near genes chr2R 15375204 intergenic not near genes chr2R_4_15375001 chr2R_15375001 RAL-502 1034 chr2R 15537689 15537741 chr2R 15537791 15537843 11 102 4.0 2.0 3.0 2.8 154 chr2R 15537689 3` UTR CG30471 + chr2R 15537766 3` UTR CG30471 + chr2R 15537843 intergenic CG30471 +,CG30467 + chr2R_11_15535001 chr2R_15535001 RAL-502 1035 chr2R 15573007 15573012 chr2R 15573133 15573145 6 131 10.5 0.5 5.5 0.9 138 chr2R 15573007 3` UTR CG30466 + chr2R 15573076 3` UTR CG30466 + chr2R 15573145 3` UTR,3` UTR CG30466 +,CG8204 - chr2R_6_15570001 chr2R_15570001 RAL-502 1036 chr2R 15573014 15573023 chr2R 15573132 15573153 5 125 9.5 0.5 5.0 0.8 139 chr2R 15573014 3` UTR CG30466 + chr2R 15573084 3` UTR CG30466 + chr2R 15573153 3` UTR,3` UTR CG30466 +,CG8204 - chr2R_5_15570001 chr2R_15570001 RAL-502 1037 chr2R 15606117 15606126 chr2R 15606214 15606223 4 97 6.5 3.0 4.8 0.7 106 chr2R 15606117 intergenic not near genes chr2R 15606170 intergenic not near genes chr2R 15606223 intergenic not near genes chr2R_4_15605001 chr2R_15605001 RAL-502 1038 chr2R 15645674 15645697 chr2R 15645780 15645782 7 100 3.0 0.0 1.5 2.8 108 chr2R 15645674 intron CG42524 + chr2R 15645728 intron CG42524 + chr2R 15645782 intron CG42524 + chr2R_7_15645001 chr2R_15645001 RAL-502 1039 chr2R 15685343 15685396 chr2R 15685466 15685519 6 122 3.0 2.0 2.5 1.7 176 chr2R 15685343 intron,exon Ranbp11 +,CG30082 - chr2R 15685431 intron,intron Ranbp11 +,CG30082 - chr2R 15685519 intron,exon Ranbp11 +,CG30082 - chr2R_6_15685001 chr2R_15685001 RAL-502 1040 chr2R 15700033 15700269 chr2R 15700142 15700403 13 130 3.0 9.5 6.2 1.8 370 chr2R 15700033 intron,5` UTR CG30080 -,CG42662 - chr2R 15700218 intron,5` UTR CG30080 -,CG42662 - chr2R 15700403 intron,5` UTR CG30080 -,CG42662 - chr2R_13_15700001 chr2R_15700001 RAL-502 1041 chr2R 15702938 15702957 chr2R 15703035 15703054 8 97 4.0 2.5 3.2 1.9 116 chr2R 15702938 intergenic not near genes chr2R 15702996 intergenic not near genes chr2R 15703054 intergenic not near genes chr2R_8_15700001 chr2R_15700001 RAL-502 1042 chr2R 15750733 15750750 chr2R 15750807 15750827 8 91 1.0 7.0 4.0 1.6 94 chr2R 15750733 intron CG30089 + chr2R 15750780 intron CG30089 + chr2R 15750827 intron CG30089 + chr2R_8_15750001 chr2R_15750001 RAL-502 1043 chr2R 15891798 15891835 chr2R 15891894 15891931 8 96 0.5 5.0 2.8 2.1 133 chr2R 15891798 intron sli - chr2R 15891864 intron sli - chr2R 15891931 intron sli - chr2R_8_15890001 chr2R_15890001 RAL-502 1044 chr2R 15911030 15911041 chr2R 15911623 15911634 7 593 6.5 3.0 4.8 1.2 604 chr2R 15911030 intron sli - chr2R 15911332 intron sli - chr2R 15911634 intron sli - chr2R_7_15910001 chr2R_15910001 RAL-502 1045 chr2R 15911044 15911068 chr2R 15911611 15911635 6 583 3.5 2.0 2.8 1.6 591 chr2R 15911044 intron sli - chr2R 15911340 intron sli - chr2R 15911635 intron sli - chr2R_6_15910001 chr2R_15910001 RAL-502 1046 chr2R 15987929 15987973 chr2R 15988028 15988067 8 96 8.0 1.0 4.5 1.5 138 chr2R 15987929 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15987998 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988067 intron,5` UTR Strn-Mlck -,CR45021 + chr2R_8_15985001 chr2R_15985001 RAL-502 1047 chr2R 16061708 16061717 chr2R 16064363 16064372 Burdock 5 2655 9.0 3.0 6.0 0.7 2664 chr2R 16061708 intergenic not near genes chr2R 16063040 intergenic not near genes chr2R 16064372 intergenic not near genes chr2R_5_16060001 chr2R_16060001 RAL-502 1048 chr2R 16245404 16245424 chr2R 16245518 16245538 4 114 0.0 6.5 3.2 1.0 134 chr2R 16245404 intron CngA - chr2R 16245471 intron CngA - chr2R 16245538 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-502 1049 chr2R 16352848 16352863 chr2R 16352951 16352966 8 102 2.5 1.5 2.0 2.7 118 chr2R 16352848 intergenic not near genes chr2R 16352907 intergenic not near genes chr2R 16352966 intergenic not near genes chr2R_8_16350001 chr2R_16350001 RAL-502 1050 chr2R 16449310 16449317 chr2R 16449576 16449583 5 266 8.0 8.5 8.2 0.5 273 chr2R 16449310 intergenic not near genes chr2R 16449446 intergenic not near genes chr2R 16449583 intergenic not near genes chr2R_5_16445001 chr2R_16445001 RAL-502 1051 chr2R 16489251 16489301 chr2R 16489355 16489373 16 102 3.5 1.0 2.2 5.0 122 chr2R 16489251 intergenic CG33459 + chr2R 16489312 intergenic CG33459 + chr2R 16489373 intergenic CG33459 + chr2R_16_16485001 chr2R_16485001 RAL-502 1052 chr2R 16544845 16544869 chr2R 16544950 16544968 7 103 0.0 0.0 0.0 7.0 123 chr2R 16544845 intergenic not near genes chr2R 16544906 intergenic not near genes chr2R 16544968 intergenic not near genes chr2R_7_16540001 chr2R_16540001 RAL-502 1053 chr2R 16617060 16617081 chr2R 16617150 16617180 7 97 4.0 5.0 4.5 1.3 120 chr2R 16617060 intron CG5065 + chr2R 16617120 intron CG5065 + chr2R 16617180 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-502 1054 chr2R 16701974 16702022 chr2R 16702081 16702129 12 100 4.5 1.5 3.0 3.0 155 chr2R 16701974 intron CG30463 - chr2R 16702052 intron CG30463 - chr2R 16702129 intron CG30463 - chr2R_12_16700001 chr2R_16700001 RAL-502 1055 chr2R 16734949 16734999 chr2R 16735068 16735117 9 118 2.5 4.0 3.2 2.1 168 chr2R 16734949 intergenic not near genes chr2R 16735033 intergenic not near genes chr2R 16735117 intergenic not near genes chr2R_9_16735001 chr2R_16735001 RAL-502 1056 chr2R 16775649 16775656 chr2R 16775930 16775943 5 286 6.0 6.0 6.0 0.7 294 chr2R 16775649 3` UTR Arp53D + chr2R 16775796 intergenic Arp53D + chr2R 16775943 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-502 1057 chr2R 16784249 16784296 chr2R 16784342 16784364 24 92 2.5 5.0 3.8 5.0 115 chr2R 16784249 intron CG5522 + chr2R 16784306 intron CG5522 + chr2R 16784364 intron CG5522 + chr2R_24_16780001 chr2R_16780001 RAL-502 1058 chr2R 16807389 16807428 chr2R 16807500 16807539 5 111 3.0 1.0 2.0 1.7 150 chr2R 16807389 intergenic not near genes chr2R 16807464 intergenic not near genes chr2R 16807539 intergenic not near genes chr2R_5_16805001 chr2R_16805001 RAL-502 1059 chr2R 16882734 16882744 chr2R 16882851 16882888 4 137 2.0 4.0 3.0 1.0 154 chr2R 16882734 intron,intron CG8910 -,CG6472 + chr2R 16882811 intron,intron CG8910 -,CG6472 + chr2R 16882888 intron,intron CG8910 -,CG6472 + chr2R_4_16880001 chr2R_16880001 RAL-502 1060 chr2R 16910215 16910245 chr2R 16910334 16910358 13 117 2.5 5.0 3.8 2.7 143 chr2R 16910215 intergenic not near genes chr2R 16910286 intergenic not near genes chr2R 16910358 intergenic not near genes chr2R_13_16910001 chr2R_16910001 RAL-502 1061 chr2R 17139389 17139401 chr2R 17139549 17139561 5 159 4.5 2.0 3.2 1.2 172 chr2R 17139389 3` UTR CG11395 + chr2R 17139475 3` UTR,3` UTR CG11395 +,CG43103 - chr2R 17139561 3` UTR,3` UTR CG11395 +,CG43103 - chr2R_5_17135001 chr2R_17135001 RAL-502 1062 chr2R 17147224 17147265 chr2R 17152275 17152316 jockey 14 5050 4.5 4.5 4.5 2.5 5092 chr2R 17147224 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152316 intergenic not near genes chr2R_14_17145001 chr2R_17145001 RAL-502 1063 chr2R 17161338 17161354 chr2R 17161565 17161579 5 226 6.0 0.0 3.0 1.2 241 chr2R 17161338 intergenic not near genes chr2R 17161458 intergenic not near genes chr2R 17161579 intergenic not near genes chr2R_5_17160001 chr2R_17160001 RAL-502 1064 chr2R 17176357 17176385 chr2R 17182564 17182595 diver 6 6208 0.5 6.5 3.5 1.3 6238 chr2R 17176357 intergenic not near genes chr2R 17179476 intergenic not near genes chr2R 17182595 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-502 1065 chr2R 17236487 17236534 chr2R 17241711 17241755 copia 17 5223 4.5 5.5 5.0 2.8 5268 chr2R 17236487 intron mbl + chr2R 17239121 intron mbl + chr2R 17241755 intron mbl + chr2R_17_17235001 chr2R_17235001 RAL-502 1066 chr2R 17242931 17242953 chr2R 17243059 17243081 9 128 1.5 2.0 1.8 3.2 150 chr2R 17242931 intron mbl + chr2R 17243006 intron mbl + chr2R 17243081 intron mbl + chr2R_9_17240001 chr2R_17240001 RAL-502 1067 chr2R 17242958 17242979 chr2R 17243058 17243101 8 121 0.5 2.0 1.2 3.6 143 chr2R 17242958 intron mbl + chr2R 17243030 intron mbl + chr2R 17243101 intron mbl + chr2R_8_17240001 chr2R_17240001 RAL-502 1068 chr2R 17331695 17331725 chr2R 17331789 17331820 10 93 2.5 3.0 2.8 2.6 125 chr2R 17331695 intron mbl + chr2R 17331758 intron mbl + chr2R 17331820 intron mbl + chr2R_10_17330001 chr2R_17330001 RAL-502 1069 chr2R 17351393 17351401 chr2R 17351496 17351504 4 103 3.5 6.0 4.8 0.7 111 chr2R 17351393 intron mbl + chr2R 17351448 intron mbl + chr2R 17351504 intron mbl + chr2R_4_17350001 chr2R_17350001 RAL-502 1070 chr2R 17443755 17443801 chr2R 17443851 17443897 4 96 1.5 0.5 1.0 2.0 142 chr2R 17443755 intron EDTP - chr2R 17443826 intron EDTP - chr2R 17443897 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-502 1071 chr2R 17458987 17459022 chr2R 17459090 17459127 14 103 5.0 3.0 4.0 2.8 140 chr2R 17458987 intron CG14478 + chr2R 17459057 intron CG14478 + chr2R 17459127 intron CG14478 + chr2R_14_17455001 chr2R_17455001 RAL-502 1072 chr2R 17470332 17470353 chr2R 17470436 17470457 5 104 0.0 2.5 1.2 2.3 125 chr2R 17470332 intron qkr54B + chr2R 17470394 intron qkr54B + chr2R 17470457 intron qkr54B + chr2R_5_17470001 chr2R_17470001 RAL-502 1073 chr2R 17485902 17485922 chr2R 17490684 17490697 F-element 9 4781 7.5 1.0 4.2 1.7 4795 chr2R 17485902 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488300 intron NT5E-2 + chr2R 17490697 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-502 1074 chr2R 17547556 17547596 chr2R 17547656 17547696 12 97 6.0 5.0 5.5 1.8 140 chr2R 17547556 intergenic RpL18A -,MESR4 + chr2R 17547626 intergenic MESR4 +,RpL18A - chr2R 17547696 intergenic MESR4 +,RpL18A - chr2R_12_17545001 chr2R_17545001 RAL-502 1075 chr2R 17627731 17627783 chr2R 17628078 17628130 19 342 3.5 3.0 3.2 4.5 399 chr2R 17627731 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628130 intron CG10936 - chr2R_19_17625001 chr2R_17625001 RAL-502 1076 chr2R 17637822 17637840 chr2R 17637922 17637940 5 100 3.5 3.0 3.2 1.2 118 chr2R 17637822 intron CG10936 - chr2R 17637881 intron CG10936 - chr2R 17637940 intron CG10936 - chr2R_5_17635001 chr2R_17635001 RAL-502 1077 chr2R 17709962 17710113 chr2R 17710073 17710211 25 108 0.0 0.0 0.0 25.0 249 chr2R 17709962 intron CG6424 - chr2R 17710086 intron CG6424 - chr2R 17710211 intron CG6424 - chr2R_25_17710001 chr2R_17710001 RAL-502 1078 chr2R 17782351 17782394 chr2R 17783574 17783617 pogo 6 1223 1.0 2.5 1.8 2.1 1266 chr2R 17782351 intergenic CG33981 -,fab1 - chr2R 17782984 intergenic not near genes chr2R 17783617 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-502 1079 chr2R 17784021 17784053 chr2R 17784271 17784295 pogo 10 250 2.5 2.5 2.5 2.9 274 chr2R 17784021 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-502 1080 chr2R 17812802 17812818 chr2R 17812900 17812915 6 97 3.0 6.5 4.8 1.0 113 chr2R 17812802 intron grh + chr2R 17812858 intron grh + chr2R 17812915 intron grh + chr2R_6_17810001 chr2R_17810001 RAL-502 1081 chr2R 17860153 17860193 chr2R 17860255 17860290 6 101 3.5 1.5 2.5 1.7 137 chr2R 17860153 3` UTR olf186-F + chr2R 17860222 3` UTR olf186-F + chr2R 17860290 3` UTR olf186-F + chr2R_6_17860001 chr2R_17860001 RAL-502 1082 chr2R 17920275 17920309 chr2R 17920497 17920528 6 221 2.5 6.0 4.2 1.2 253 chr2R 17920275 intron Elk + chr2R 17920402 intron Elk + chr2R 17920528 intron Elk + chr2R_6_17920001 chr2R_17920001 RAL-502 1083 chr2R 17925862 17925905 chr2R 17925978 17926012 9 115 1.5 4.0 2.8 2.4 150 chr2R 17925862 3` UTR Elk + chr2R 17925937 3` UTR Elk + chr2R 17926012 3` UTR Elk + chr2R_9_17925001 chr2R_17925001 RAL-502 1084 chr2R 17929108 17929147 chr2R 17929221 17929226 12 102 3.5 4.0 3.8 2.5 118 chr2R 17929108 intergenic not near genes chr2R 17929167 intergenic not near genes chr2R 17929226 intergenic not near genes chr2R_12_17925001 chr2R_17925001 RAL-502 1085 chr2R 17973809 17973832 chr2R 17973886 17973904 5 81 2.5 4.5 3.5 1.1 95 chr2R 17973809 intergenic not near genes chr2R 17973856 intergenic not near genes chr2R 17973904 intergenic not near genes chr2R_5_17970001 chr2R_17970001 RAL-502 1086 chr2R 17987765 17987812 chr2R 17988108 17988161 10 344 4.0 2.5 3.2 2.4 396 chr2R 17987765 intron dpr13 - chr2R 17987963 intron dpr13 - chr2R 17988161 intron dpr13 - chr2R_10_17985001 chr2R_17985001 RAL-502 1087 chr2R 17988560 17988605 chr2R 17989118 17989164 7 558 1.0 3.5 2.2 2.2 604 chr2R 17988560 intron dpr13 - chr2R 17988862 intron dpr13 - chr2R 17989164 intron dpr13 - chr2R_7_17985001 chr2R_17985001 RAL-502 1088 chr2R 18045652 18045696 chr2R 18046023 18046067 jockey 11 372 4.5 2.5 3.5 2.4 415 chr2R 18045652 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046067 intergenic CG5767 - chr2R_11_18045001 chr2R_18045001 RAL-502 1089 chr2R 18111693 18111715 chr2R 18115581 18115585 F-element 7 3884 6.0 0.0 3.0 1.8 3892 chr2R 18111693 intergenic not near genes chr2R 18113639 intergenic not near genes chr2R 18115585 intergenic not near genes chr2R_7_18110001 chr2R_18110001 RAL-502 1090 chr2R 18124326 18124371 chr2R 18124415 18124468 18 95 3.5 4.0 3.8 3.8 142 chr2R 18124326 intron stau - chr2R 18124397 intron stau - chr2R 18124468 intron stau - chr2R_18_18120001 chr2R_18120001 RAL-502 1091 chr2R 18151359 18151390 chr2R 18151457 18151488 4 98 5.0 2.5 3.8 0.8 129 chr2R 18151359 5` UTR CG5742 - chr2R 18151424 intergenic CG5742 -,adp + chr2R 18151488 intergenic CG5742 -,adp + chr2R_4_18150001 chr2R_18150001 RAL-502 1092 chr2R 18358373 18358388 chr2R 18372605 18372620 roo 10 14231 14.5 3.5 9.0 1.0 14247 chr2R 18358373 intergenic not near genes chr2R 18365496 intergenic not near genes chr2R 18372620 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-502 1093 chr2R 18358392 18358414 chr2R 18372597 18372646 roo 10 14227 8.5 2.0 5.2 1.6 14254 chr2R 18358392 intergenic not near genes chr2R 18365519 intergenic not near genes chr2R 18372646 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-502 1094 chr2R 18398147 18398193 chr2R 18398255 18398307 9 108 1.0 4.5 2.8 2.4 160 chr2R 18398147 intron GstE10 - chr2R 18398227 intron GstE10 - chr2R 18398307 intron GstE10 - chr2R_9_18395001 chr2R_18395001 RAL-502 1095 chr2R 18402484 18402525 chr2R 18402591 18402599 18 101 6.0 5.0 5.5 2.8 115 chr2R 18402484 intergenic not near genes chr2R 18402542 intergenic not near genes chr2R 18402599 intergenic not near genes chr2R_18_18400001 chr2R_18400001 RAL-502 1096 chr2R 18408265 18408310 chr2R 18408406 18408441 12 140 4.5 7.5 6.0 1.7 176 chr2R 18408265 exon GstE8 + chr2R 18408353 exon GstE8 + chr2R 18408441 exon GstE8 + chr2R_12_18405001 chr2R_18405001 RAL-502 1097 chr2R 18480439 18480477 chr2R 18480566 18480574 4 120 0.0 0.0 0.0 4.0 135 chr2R 18480439 intron CG30116 - chr2R 18480506 intron CG30116 - chr2R 18480574 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-502 1098 chr2R 18487826 18487852 chr2R 18495293 18495342 blood 4 7484 1.0 8.5 4.8 0.7 7516 chr2R 18487826 intron CG30116 - chr2R 18491584 intron CG30116 - chr2R 18495342 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-502 1099 chr2R 18575806 18575831 chr2R 18581984 18582039 3S18 15 6198 2.5 6.5 4.5 2.7 6233 chr2R 18575806 intron GEFmeso - chr2R 18578922 intron GEFmeso - chr2R 18582039 intron GEFmeso - chr2R_15_18575001 chr2R_18575001 RAL-502 1100 chr2R 18590846 18590900 chr2R 18600018 18600072 roo 9 9165 3.0 1.0 2.0 3.0 9226 chr2R 18590846 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600072 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-502 1101 chr2R 18662339 18662372 chr2R 18662442 18662475 10 102 5.0 0.0 2.5 2.9 136 chr2R 18662339 intergenic not near genes chr2R 18662407 intergenic not near genes chr2R 18662475 intergenic not near genes chr2R_10_18660001 chr2R_18660001 RAL-502 1102 chr2R 18692880 18692918 chr2R 18692987 18693015 10 102 4.0 2.0 3.0 2.5 135 chr2R 18692880 intron Sik3 + chr2R 18692948 intron Sik3 + chr2R 18693015 intron Sik3 + chr2R_10_18690001 chr2R_18690001 RAL-502 1103 chr2R 18713220 18713273 chr2R 18713313 18713370 21 92 4.0 6.5 5.2 3.4 150 chr2R 18713220 intergenic not near genes chr2R 18713295 intergenic not near genes chr2R 18713370 intergenic not near genes chr2R_21_18710001 chr2R_18710001 RAL-502 1104 chr2R 18717525 18717533 chr2R 18717636 18717644 5 110 6.0 9.0 7.5 0.6 119 chr2R 18717525 intergenic not near genes chr2R 18717584 intergenic not near genes chr2R 18717644 intergenic Hs3st-A + chr2R_5_18715001 chr2R_18715001 RAL-502 1105 chr2R 18717536 18717557 chr2R 18717631 18717665 9 106 4.0 7.5 5.8 1.3 129 chr2R 18717536 intergenic not near genes chr2R 18717600 intergenic not near genes chr2R 18717665 intergenic Hs3st-A + chr2R_9_18715001 chr2R_18715001 RAL-502 1106 chr2R 18808059 18808075 chr2R 18808160 18808184 6 107 0.0 0.0 0.0 6.0 125 chr2R 18808059 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808184 intergenic CG15096 - chr2R_6_18805001 chr2R_18805001 RAL-502 1107 chr2R 18827696 18827723 chr2R 18827796 18827820 13 99 4.0 4.0 4.0 2.6 124 chr2R 18827696 intron CG15097 - chr2R 18827758 intron CG15097 - chr2R 18827820 intron CG15097 - chr2R_13_18825001 chr2R_18825001 RAL-502 1108 chr2R 18847590 18847636 chr2R 18847693 18847709 13 91 4.5 2.5 3.5 2.9 119 chr2R 18847590 exon CG15100 - chr2R 18847650 exon CG15100 - chr2R 18847709 exon CG15100 - chr2R_13_18845001 chr2R_18845001 RAL-502 1109 chr2R 18862288 18862404 chr2R 18862395 18862509 5 113 0.5 0.5 0.5 3.3 221 chr2R 18862288 intergenic Jheh3 - chr2R 18862398 intergenic Jheh3 -,CG43069 + chr2R 18862509 intergenic CG43069 +,Jheh3 - chr2R_5_18860001 chr2R_18860001 RAL-502 1110 chr2R 18992013 18992020 chr2R 18992174 18992181 4 161 7.5 9.5 8.5 0.4 168 chr2R 18992013 intron tn + chr2R 18992097 intron tn + chr2R 18992181 intron tn + chr2R_4_18990001 chr2R_18990001 RAL-502 1111 chr2R 18992021 18992049 chr2R 18992167 18992210 8 157 3.5 8.0 5.8 1.2 189 chr2R 18992021 intron tn + chr2R 18992116 intron tn + chr2R 18992210 intron tn + chr2R_8_18990001 chr2R_18990001 RAL-502 1112 chr2R 19026028 19026057 chr2R 19026188 19026217 12 160 6.0 3.0 4.5 2.2 189 chr2R 19026028 intron 5-HT1B - chr2R 19026122 intron 5-HT1B - chr2R 19026217 intron 5-HT1B - chr2R_12_19025001 chr2R_19025001 RAL-502 1113 chr2R 19065796 19065829 chr2R 19065900 19065926 8 92 4.0 4.5 4.2 1.5 130 chr2R 19065796 intergenic not near genes chr2R 19065861 intergenic not near genes chr2R 19065926 intergenic not near genes chr2R_8_19065001 chr2R_19065001 RAL-502 1114 chr2R 19067705 19067751 chr2R 19067799 19067847 5 95 4.0 3.5 3.8 1.0 142 chr2R 19067705 intron 5-HT1A + chr2R 19067776 intron 5-HT1A + chr2R 19067847 intron 5-HT1A + chr2R_5_19065001 chr2R_19065001 RAL-502 1115 chr2R 19168718 19168762 chr2R 19168819 19168860 6 101 4.0 3.0 3.5 1.3 142 chr2R 19168718 intron CG10737 + chr2R 19168789 intron CG10737 + chr2R 19168860 intron CG10737 + chr2R_6_19165001 chr2R_19165001 RAL-502 1116 chr2R 19171359 19171391 chr2R 19171577 19171587 10 215 2.0 6.0 4.0 2.0 228 chr2R 19171359 exon CG10737 + chr2R 19171473 intron CG10737 + chr2R 19171587 intron CG10737 + chr2R_10_19170001 chr2R_19170001 RAL-502 1117 chr2R 19234820 19234865 chr2R 19234918 19234966 18 96 4.0 1.5 2.8 4.7 146 chr2R 19234820 intron cora + chr2R 19234893 intron cora + chr2R 19234966 intron cora + chr2R_18_19230001 chr2R_19230001 RAL-502 1118 chr2R 19253078 19253128 chr2R 19253188 19253238 13 110 4.0 2.0 3.0 3.2 160 chr2R 19253078 intron CG33453 - chr2R 19253158 exon CG33453 - chr2R 19253238 intergenic CG33453 - chr2R_13_19250001 chr2R_19250001 RAL-502 1119 chr2R 19330249 19330299 chr2R 19330357 19330405 14 107 3.0 3.5 3.2 3.3 156 chr2R 19330249 intron Rgk1 - chr2R 19330327 intron Rgk1 - chr2R 19330405 intron Rgk1 - chr2R_14_19330001 chr2R_19330001 RAL-502 1120 chr2R 19466693 19466735 chr2R 19466836 19466878 4 142 2.0 3.0 2.5 1.1 185 chr2R 19466693 intron par-1 + chr2R 19466786 intron par-1 + chr2R 19466878 intron par-1 + chr2R_4_19465001 chr2R_19465001 RAL-502 1121 chr2R 19505109 19505146 chr2R 19505218 19505229 11 103 9.0 8.5 8.8 1.1 120 chr2R 19505109 5` UTR CR44472 + chr2R 19505169 5` UTR CR44472 + chr2R 19505229 5` UTR CR44472 + chr2R_11_19505001 chr2R_19505001 RAL-502 1122 chr2R 19505147 19505158 chr2R 19505214 19505261 6 91 5.5 8.5 7.0 0.8 114 chr2R 19505147 5` UTR CR44472 + chr2R 19505204 5` UTR CR44472 + chr2R 19505261 5` UTR CR44472 + chr2R_6_19505001 chr2R_19505001 RAL-502 1123 chr2R 19546206 19546238 chr2R 19546300 19546335 8 96 4.0 3.5 3.8 1.7 129 chr2R 19546206 intron sm - chr2R 19546270 intron sm - chr2R 19546335 intron sm - chr2R_8_19545001 chr2R_19545001 RAL-502 1124 chr2R 19715835 19715852 chr2R 19723323 19723325 blood 5 7485 10.0 5.0 7.5 0.6 7490 chr2R 19715835 intergenic not near genes chr2R 19719580 intergenic not near genes chr2R 19723325 intergenic not near genes chr2R_5_19715001 chr2R_19715001 RAL-502 1125 chr2R 19776580 19776624 chr2R 19779923 19779963 jockey 16 3342 5.5 7.5 6.5 2.1 3383 chr2R 19776580 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779963 intergenic not near genes chr2R_16_19775001 chr2R_19775001 RAL-502 1126 chr2R 19957433 19957463 chr2R 19962637 19962685 copia 5 5213 5.5 5.0 5.2 0.8 5252 chr2R 19957433 intergenic CG44623 + chr2R 19960059 intergenic not near genes chr2R 19962685 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-502 1127 chr2R 20008160 20008211 chr2R 20008269 20008293 11 102 2.0 2.0 2.0 3.7 133 chr2R 20008160 intergenic not near genes chr2R 20008226 intergenic not near genes chr2R 20008293 intergenic not near genes chr2R_11_20005001 chr2R_20005001 RAL-502 1128 chr2R 20016382 20016426 chr2R 20016491 20016503 8 96 4.0 4.5 4.2 1.5 121 chr2R 20016382 intergenic CR44630 - chr2R 20016442 intergenic CR44630 - chr2R 20016503 3` UTR CR44630 - chr2R_8_20015001 chr2R_20015001 RAL-502 1129 chr2R 20032071 20032120 chr2R 20032170 20032219 13 90 2.0 5.5 3.8 2.7 148 chr2R 20032071 intergenic not near genes chr2R 20032145 intergenic not near genes chr2R 20032219 intergenic not near genes chr2R_13_20030001 chr2R_20030001 RAL-502 1130 chr2R 20057980 20057986 chr2R 20058080 20058086 6 100 1.5 0.0 0.8 3.3 106 chr2R 20057980 intergenic CR44631 + chr2R 20058033 intergenic CR44631 + chr2R 20058086 intergenic CR44631 + chr2R_6_20055001 chr2R_20055001 RAL-502 1131 chr2R 20069230 20069253 chr2R 20071888 20071911 opus 6 2658 1.0 8.5 4.8 1.0 2681 chr2R 20069230 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071911 intergenic not near genes chr2R_6_20070001 chr2R_20070001 RAL-502 1132 chr2R 20080600 20080623 chr2R 20080695 20080720 10 95 0.0 10.5 5.2 1.6 120 chr2R 20080600 intergenic not near genes chr2R 20080660 intergenic not near genes chr2R 20080720 intergenic not near genes chr2R_10_20080001 chr2R_20080001 RAL-502 1133 chr2R 20118853 20118890 chr2R 20118960 20118998 12 101 4.0 4.0 4.0 2.4 145 chr2R 20118853 intergenic not near genes chr2R 20118926 intergenic not near genes chr2R 20118998 intergenic not near genes chr2R_12_20115001 chr2R_20115001 RAL-502 1134 chr2R 20202572 20202589 chr2R 20202687 20202703 5 118 3.0 13.0 8.0 0.6 131 chr2R 20202572 intergenic not near genes chr2R 20202638 intergenic not near genes chr2R 20202703 intergenic not near genes chr2R_5_20200001 chr2R_20200001 RAL-502 1135 chr2R 20555323 20555336 chr2R 20555433 20555448 5 112 5.5 2.0 3.8 1.0 125 chr2R 20555323 intergenic not near genes chr2R 20555386 intergenic not near genes chr2R 20555448 intergenic not near genes chr2R_5_20555001 chr2R_20555001 RAL-502 1136 chr2R 20733596 20733634 chr2R 20733678 20733717 7 85 3.0 7.0 5.0 1.2 121 chr2R 20733596 intron dpr + chr2R 20733656 intron dpr + chr2R 20733717 intron dpr + chr2R_7_20730001 chr2R_20730001 RAL-502 1137 chr2R 20739428 20739478 chr2R 20744210 20744213 F-element 13 4779 1.0 3.5 2.2 4.1 4785 chr2R 20739428 intron dpr + chr2R 20741820 intron dpr + chr2R 20744213 intron dpr + chr2R_13_20740001 chr2R_20740001 RAL-502 1138 chr2R 20783299 20783328 chr2R 20788091 20788120 F-element 9 4791 8.0 7.5 7.8 1.0 4821 chr2R 20783299 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788120 intergenic CG43666 - chr2R_9_20785001 chr2R_20785001 RAL-502 1139 chr2R 20808914 20808967 chr2R 20809015 20809068 26 100 5.5 3.0 4.2 5.0 154 chr2R 20808914 intergenic not near genes chr2R 20808991 intergenic not near genes chr2R 20809068 intergenic not near genes chr2R_26_20805001 chr2R_20805001 RAL-502 1140 chr2R 20824978 20825002 chr2R 20825079 20825103 7 101 6.0 4.0 5.0 1.2 125 chr2R 20824978 intron insc - chr2R 20825040 intron insc - chr2R 20825103 intron insc - chr2R_7_20825001 chr2R_20825001 RAL-502 1141 chr2R 20926894 20926906 chr2R 20927183 20927195 6 288 2.0 7.5 4.8 1.0 301 chr2R 20926894 intron Rx + chr2R 20927044 intron Rx + chr2R 20927195 intron Rx + chr2R_6_20925001 chr2R_20925001 RAL-502 1142 chr2R 20962885 20962938 chr2R 20963003 20963056 31 117 4.0 6.0 5.0 5.2 171 chr2R 20962885 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963056 intergenic not near genes chr2R_31_20960001 chr2R_20960001 RAL-502 1143 chr2R 20967008 20967057 chr2R 20967105 20967150 5 96 3.0 0.0 1.5 2.0 142 chr2R 20967008 intergenic not near genes chr2R 20967079 intergenic not near genes chr2R 20967150 intergenic not near genes chr2R_5_20965001 chr2R_20965001 RAL-502 1144 chr2R 21040847 21040863 chr2R 21040943 21040948 4 93 13.5 7.0 10.2 0.4 101 chr2R 21040847 intergenic not near genes chr2R 21040898 intergenic not near genes chr2R 21040948 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-502 1145 chr2R 21040865 21040893 chr2R 21040942 21040975 6 83 8.5 7.0 7.8 0.7 110 chr2R 21040865 intergenic not near genes chr2R 21040920 intergenic not near genes chr2R 21040975 intergenic not near genes chr2R_6_21040001 chr2R_21040001 RAL-502 1146 chr2R 21057471 21057498 chr2R 21057572 21057603 5 102 1.0 0.0 0.5 3.3 132 chr2R 21057471 intergenic shg -,cpa + chr2R 21057537 intergenic cpa +,shg - chr2R 21057603 intergenic cpa +,shg - chr2R_5_21055001 chr2R_21055001 RAL-502 1147 chr2R 21160768 21160812 chr2R 21160897 21160939 12 123 4.5 2.5 3.5 2.7 171 chr2R 21160768 intergenic CG30389 - chr2R 21160854 intergenic CG30389 - chr2R 21160939 intergenic not near genes chr2R_12_21160001 chr2R_21160001 RAL-502 1148 chr2R 21188202 21188248 chr2R 21188299 21188346 18 100 2.5 4.5 3.5 4.0 144 chr2R 21188202 exon tud + chr2R 21188274 intron tud + chr2R 21188346 intron tud + chr2R_18_21185001 chr2R_21185001 RAL-502 1149 chr2R 21258458 21258462 chr2R 21258555 21258559 4 97 0.0 3.5 1.8 1.4 101 chr2R 21258458 intron Rgk3 + chr2R 21258508 intron Rgk3 + chr2R 21258559 intron Rgk3 + chr2R_4_21255001 chr2R_21255001 RAL-502 1150 chr2R 21381912 21381928 chr2R 21382019 21382034 4 107 4.0 0.5 2.2 1.2 122 chr2R 21381912 intergenic not near genes chr2R 21381973 intergenic not near genes chr2R 21382034 intergenic not near genes chr2R_4_21380001 chr2R_21380001 RAL-502 1151 chr2R 21408350 21408404 chr2R 21408462 21408510 14 110 2.0 0.5 1.2 6.4 160 chr2R 21408350 intron Sdc - chr2R 21408430 intron Sdc - chr2R 21408510 intron Sdc - chr2R_14_21405001 chr2R_21405001 RAL-502 1152 chr2R 21417259 21417272 chr2R 21417380 21417393 5 121 11.5 0.0 5.8 0.7 134 chr2R 21417259 intron Sdc - chr2R 21417326 intron Sdc - chr2R 21417393 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-502 1153 chr2R 21543806 21543857 chr2R 21543903 21543939 10 89 1.5 2.5 2.0 3.3 133 chr2R 21543806 intron Egfr + chr2R 21543872 intron Egfr + chr2R 21543939 intron Egfr + chr2R_10_21540001 chr2R_21540001 RAL-502 1154 chr2R 21610866 21610873 chr2R 21611185 21611188 4 319 15.0 5.5 10.2 0.4 322 chr2R 21610866 intron CG15673 - chr2R 21611027 intron CG15673 - chr2R 21611188 intron CG15673 - chr2R_4_21610001 chr2R_21610001 RAL-502 1155 chr2R 21610879 21610898 chr2R 21611184 21611219 7 318 6.0 5.0 5.5 1.1 340 chr2R 21610879 intron CG15673 - chr2R 21611049 intron CG15673 - chr2R 21611219 intron CG15673 - chr2R_7_21610001 chr2R_21610001 RAL-502 1156 chr2R 21753063 21753117 chr2R 21753567 21753622 roo 19 502 3.5 2.5 3.0 4.8 559 chr2R 21753063 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753622 intergenic not near genes chr2R_19_21750001 chr2R_21750001 RAL-502 1157 chr2R 21759541 21759578 chr2R 21759646 21759685 5 102 4.0 2.5 3.2 1.2 144 chr2R 21759541 intergenic not near genes chr2R 21759613 intergenic not near genes chr2R 21759685 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-502 1158 chr2R 21809503 21809513 chr2R 21817762 21817772 roo 4 8260 3.5 3.0 3.2 1.0 8269 chr2R 21809503 intergenic not near genes chr2R 21813638 intergenic not near genes chr2R 21817772 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-502 1159 chr2R 21818868 21818898 chr2R 21818963 21818991 14 103 8.0 0.0 4.0 2.8 123 chr2R 21818868 intergenic not near genes chr2R 21818930 intergenic not near genes chr2R 21818991 intergenic not near genes chr2R_14_21815001 chr2R_21815001 RAL-502 1160 chr2R 21833504 21833549 chr2R 21833603 21833648 12 98 1.0 6.0 3.5 2.7 144 chr2R 21833504 exon CG34040 - chr2R 21833576 intergenic CG34040 - chr2R 21833648 intergenic CG34040 - chr2R_12_21830001 chr2R_21830001 RAL-502 1161 chr2R 21867004 21867021 chr2R 21867102 21867129 7 107 4.0 2.5 3.2 1.7 125 chr2R 21867004 intergenic comr - chr2R 21867066 intergenic comr - chr2R 21867129 intergenic comr - chr2R_7_21865001 chr2R_21865001 RAL-502 1162 chr2R 21880592 21880635 chr2R 21880707 21880753 16 116 1.5 4.0 2.8 4.2 161 chr2R 21880592 intron Fili + chr2R 21880672 intron Fili + chr2R 21880753 intron Fili + chr2R_16_21880001 chr2R_21880001 RAL-502 1163 chr2R 21888305 21888323 chr2R 21888410 21888423 5 104 3.0 8.0 5.5 0.8 118 chr2R 21888305 intron Fili + chr2R 21888364 intron Fili + chr2R 21888423 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-502 1164 chr2R 21906260 21906269 chr2R 21906381 21906390 5 121 7.0 2.5 4.8 0.9 130 chr2R 21906260 intron Fili + chr2R 21906325 intron Fili + chr2R 21906390 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-502 1165 chr2R 21906273 21906298 chr2R 21906378 21906419 4 117 2.0 2.5 2.2 1.2 146 chr2R 21906273 intron Fili + chr2R 21906346 intron Fili + chr2R 21906419 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-502 1166 chr2R 21922583 21922620 chr2R 21922671 21922717 20 95 3.0 3.0 3.0 5.0 134 chr2R 21922583 intron Fili + chr2R 21922650 intron Fili + chr2R 21922717 intron Fili + chr2R_20_21920001 chr2R_21920001 RAL-502 1167 chr2R 21922621 21922625 chr2R 21922670 21922722 4 82 3.0 2.5 2.8 1.1 101 chr2R 21922621 intron Fili + chr2R 21922672 intron Fili + chr2R 21922722 intron Fili + chr2R_4_21920001 chr2R_21920001 RAL-502 1168 chr2R 21958685 21958709 chr2R 21958769 21958805 7 93 2.0 3.0 2.5 2.0 120 chr2R 21958685 intergenic not near genes chr2R 21958745 intergenic not near genes chr2R 21958805 intergenic not near genes chr2R_7_21955001 chr2R_21955001 RAL-502 1169 chr2R 21971586 21971600 chr2R 21971755 21971769 5 167 6.0 3.0 4.5 0.9 183 chr2R 21971586 intergenic CG34029 - chr2R 21971678 intergenic CG34029 - chr2R 21971769 intergenic CG34029 - chr2R_5_21970001 chr2R_21970001 RAL-502 1170 chr2R 21971606 21971626 chr2R 21971744 21971773 6 153 3.5 2.0 2.8 1.6 167 chr2R 21971606 intergenic CG34029 - chr2R 21971690 intergenic CG34029 - chr2R 21971773 intergenic CG34029 - chr2R_6_21970001 chr2R_21970001 RAL-502 1171 chr2R 22004278 22004290 chr2R 22004392 22004404 6 114 4.5 0.5 2.5 1.7 126 chr2R 22004278 intron CG34370 - chr2R 22004341 intron CG34370 - chr2R 22004404 intron CG34370 - chr2R_6_22000001 chr2R_22000001 RAL-502 1172 chr2R 22009754 22009799 chr2R 22009850 22009895 13 94 3.5 1.0 2.2 4.1 141 chr2R 22009754 intron CG34370 - chr2R 22009824 intron CG34370 - chr2R 22009895 intron CG34370 - chr2R_13_22005001 chr2R_22005001 RAL-502 1173 chr2R 22029475 22029506 chr2R 22029633 22029664 10 156 2.0 4.5 3.2 2.4 189 chr2R 22029475 intron CG34370 - chr2R 22029570 intron CG34370 - chr2R 22029664 intron CG34370 - chr2R_10_22025001 chr2R_22025001 RAL-502 1174 chr2R 22135440 22135455 chr2R 22135544 22135553 6 118 5.5 1.0 3.2 1.4 113 chr2R 22135440 intergenic not near genes chr2R 22135496 intergenic not near genes chr2R 22135553 intergenic not near genes chr2R_6_22135001 chr2R_22135001 RAL-502 1175 chr2R 22185673 22185697 chr2R 22185787 22185801 5 115 3.5 1.5 2.5 1.4 128 chr2R 22185673 3` UTR MED16 + chr2R 22185737 3` UTR MED16 + chr2R 22185801 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-502 1176 chr2R 22216906 22216952 chr2R 22217003 22217047 10 92 3.5 6.5 5.0 1.7 141 chr2R 22216906 3` UTR ari-2 + chr2R 22216976 3` UTR ari-2 + chr2R 22217047 3` UTR ari-2 + chr2R_10_22215001 chr2R_22215001 RAL-502 1177 chr2R 22290063 22290087 chr2R 22290167 22290173 6 100 3.5 2.0 2.8 1.6 110 chr2R 22290063 intergenic not near genes chr2R 22290118 intergenic not near genes chr2R 22290173 intergenic not near genes chr2R_6_22290001 chr2R_22290001 RAL-502 1178 chr2R 22297708 22297725 chr2R 22297804 22297821 7 95 0.0 3.0 1.5 2.8 113 chr2R 22297708 intergenic not near genes chr2R 22297764 intergenic wdp - chr2R 22297821 intergenic wdp - chr2R_7_22295001 chr2R_22295001 RAL-502 1179 chr2R 22349690 22349715 chr2R 22351483 22351518 jockey 8 1799 3.5 7.0 5.2 1.3 1828 chr2R 22349690 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351518 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-502 1180 chr2R 22360369 22360387 chr2R 22360822 22360830 jockey 5 451 7.0 3.5 5.2 0.8 461 chr2R 22360369 intron Liprin-gamma - chr2R 22360600 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-502 1181 chr2R 22444766 22444813 chr2R 22444902 22444949 14 135 0.0 5.5 2.8 3.7 183 chr2R 22444766 intergenic not near genes chr2R 22444858 intergenic not near genes chr2R 22444949 intergenic not near genes chr2R_14_22440001 chr2R_22440001 RAL-502 1182 chr2R 22525731 22525781 chr2R 22529305 22529308 jockey 21 3569 4.0 6.0 5.0 3.5 3577 chr2R 22525731 intron px - chr2R 22527520 intron px - chr2R 22529308 intron px - chr2R_21_22525001 chr2R_22525001 RAL-502 1183 chr2R 22541698 22541722 chr2R 22542125 22542152 12 436 4.0 4.0 4.0 2.4 454 chr2R 22541698 intron px - chr2R 22541925 intron px - chr2R 22542152 intron px - chr2R_12_22540001 chr2R_22540001 RAL-502 1184 chr2R 22545599 22545650 chr2R 22545698 22545749 8 99 2.5 1.5 2.0 2.7 150 chr2R 22545599 intron px - chr2R 22545674 intron px - chr2R 22545749 intron px - chr2R_8_22545001 chr2R_22545001 RAL-502 1185 chr2R 22646451 22646462 chr2R 22646563 22646574 7 111 11.0 0.0 5.5 1.1 123 chr2R 22646451 intergenic CG2852 -,CG30195 - chr2R 22646512 intergenic CG30195 -,CG2852 - chr2R 22646574 intergenic CG30195 -,CG2852 - chr2R_7_22645001 chr2R_22645001 RAL-502 1186 chr2R 22654355 22654402 chr2R 22654446 22654503 8 95 0.5 4.0 2.2 2.5 148 chr2R 22654355 exon Cyp6d2 - chr2R 22654429 5` UTR Cyp6d2 - chr2R 22654503 5` UTR Cyp6d2 - chr2R_8_22650001 chr2R_22650001 RAL-502 1187 chr2R 22774950 22775001 chr2R 22775387 22775440 jockey 18 435 1.5 1.5 1.5 7.2 490 chr2R 22774950 intron CG42260 - chr2R 22775195 intron CG42260 - chr2R 22775440 intron CG42260 - chr2R_18_22775001 chr2R_22775001 RAL-502 1188 chr2R 22835379 22835397 chr2R 22835447 22835486 6 80 2.0 5.5 3.8 1.2 107 chr2R 22835379 exon CG12490 + chr2R 22835432 exon CG12490 + chr2R 22835486 exon CG12490 + chr2R_6_22835001 chr2R_22835001 RAL-502 1189 chr2R 22843015 22843042 chr2R 22844997 22845024 flea 5 1982 8.0 6.0 7.0 0.6 2009 chr2R 22843015 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845024 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-502 1190 chr2R 22958341 22958390 chr2R 22958486 22958534 16 143 2.5 3.0 2.8 4.2 193 chr2R 22958341 intergenic not near genes chr2R 22958438 intergenic not near genes chr2R 22958534 intergenic not near genes chr2R_16_22955001 chr2R_22955001 RAL-502 1191 chr2R 22991612 22991657 chr2R 22991721 22991768 20 109 2.5 3.5 3.0 5.0 156 chr2R 22991612 intron twi + chr2R 22991690 intron twi + chr2R 22991768 intron twi + chr2R_20_22990001 chr2R_22990001 RAL-502 1192 chr2R 23061735 23061788 chr2R 23061831 23061881 8 94 2.5 6.0 4.2 1.5 146 chr2R 23061735 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061881 3` UTR l(2)06496 - chr2R_8_23060001 chr2R_23060001 RAL-502 1193 chr2R 23115489 23115532 chr2R 23116023 23116066 7 534 6.5 7.5 7.0 0.9 577 chr2R 23115489 intergenic not near genes chr2R 23115778 intergenic not near genes chr2R 23116066 intergenic not near genes chr2R_7_23115001 chr2R_23115001 RAL-502 1194 chr2R 23122890 23122941 chr2R 23122990 23123041 15 98 2.0 5.5 3.8 3.1 151 chr2R 23122890 intergenic not near genes chr2R 23122966 intergenic not near genes chr2R 23123041 intergenic not near genes chr2R_15_23120001 chr2R_23120001 RAL-502 1195 chr2R 23155704 23155877 chr2R 23155804 23155967 13 100 0.5 0.5 0.5 8.7 263 chr2R 23155704 intron CG9899 + chr2R 23155836 intron CG9899 + chr2R 23155967 intron CG9899 + chr2R_13_23155001 chr2R_23155001 RAL-502 1196 chr2R 23158333 23158355 chr2R 23158423 23158452 4 91 13.0 12.5 12.8 0.3 119 chr2R 23158333 intron CG9899 + chr2R 23158392 intron CG9899 + chr2R 23158452 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-502 1197 chr2R 23236797 23236852 chr2R 23236915 23236966 8 113 0.0 0.0 0.0 8.0 169 chr2R 23236797 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236966 intergenic not near genes chr2R_8_23235001 chr2R_23235001 RAL-502 1198 chr2R 23311717 23311766 chr2R 23311851 23311904 11 134 1.5 0.5 1.0 5.5 187 chr2R 23311717 intergenic not near genes chr2R 23311810 intergenic not near genes chr2R 23311904 intergenic not near genes chr2R_11_23310001 chr2R_23310001 RAL-502 1199 chr2R 23315372 23315407 chr2R 23315562 23315564 7 182 2.0 2.5 2.2 2.2 192 chr2R 23315372 intergenic not near genes chr2R 23315468 intergenic not near genes chr2R 23315564 intergenic not near genes chr2R_7_23315001 chr2R_23315001 RAL-502 1200 chr2R 23348792 23348838 chr2R 23348892 23348913 13 87 5.0 5.5 5.2 2.1 121 chr2R 23348792 intergenic not near genes chr2R 23348852 intergenic not near genes chr2R 23348913 intergenic not near genes chr2R_13_23345001 chr2R_23345001 RAL-502 1201 chr2R 23351899 23351945 chr2R 23352005 23352048 11 102 1.0 3.5 2.2 3.4 149 chr2R 23351899 exon CG34210 + chr2R 23351974 3` UTR CG34210 + chr2R 23352048 3` UTR CG34210 + chr2R_11_23350001 chr2R_23350001 RAL-502 1202 chr2R 23402587 23402641 chr2R 23407683 23407720 flea 17 5093 4.5 5.0 4.8 2.9 5133 chr2R 23402587 intergenic CG3520 - chr2R 23405154 intergenic not near genes chr2R 23407720 intergenic not near genes chr2R_17_23405001 chr2R_23405001 RAL-502 1203 chr2R 23487429 23487477 chr2R 23487530 23487579 13 95 4.5 6.0 5.2 2.1 150 chr2R 23487429 intron CG43795 + chr2R 23487504 intron CG43795 + chr2R 23487579 intron CG43795 + chr2R_13_23485001 chr2R_23485001 RAL-502 1204 chr2R 23529571 23529603 chr2R 23537161 23537169 412 4 7584 3.0 9.5 6.2 0.6 7598 chr2R 23529571 intron bw - chr2R 23533370 intron bw - chr2R 23537169 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-502 1205 chr2R 23748176 23748217 chr2R 23748315 23748356 7 136 3.5 5.5 4.5 1.3 180 chr2R 23748176 3` UTR CG13560 + chr2R 23748266 3` UTR CG13560 + chr2R 23748356 3` UTR CG13560 + chr2R_7_23745001 chr2R_23745001 RAL-502 1206 chr2R 23751689 23751730 chr2R 23751781 23751826 10 89 5.0 5.0 5.0 1.7 137 chr2R 23751689 intergenic CG11300 + chr2R 23751758 intergenic CG11300 + chr2R 23751826 intergenic CG11300 + chr2R_10_23750001 chr2R_23750001 RAL-502 1207 chr2R 23758311 23758358 chr2R 23758406 23758452 19 93 2.5 3.0 2.8 5.0 141 chr2R 23758311 intron CG9850 - chr2R 23758382 intron CG9850 - chr2R 23758452 intron CG9850 - chr2R_19_23755001 chr2R_23755001 RAL-502 1208 chr2R 23771303 23771309 chr2R 23771394 23771407 4 96 2.0 4.0 3.0 1.0 104 chr2R 23771303 intron CG9850 - chr2R 23771355 intron CG9850 - chr2R 23771407 intron CG9850 - chr2R_4_23770001 chr2R_23770001 RAL-502 1209 chr2R 23914300 23914328 chr2R 23921941 23921967 412 7 7640 5.5 4.0 4.8 1.2 7667 chr2R 23914300 exon kcc + chr2R 23918134 intron kcc + chr2R 23921967 exon kcc + chr2R_7_23915001 chr2R_23915001 RAL-502 1210 chr2R 23986502 23986547 chr2R 23986595 23986646 13 98 1.5 6.5 4.0 2.6 144 chr2R 23986502 intron Phm - chr2R 23986574 intron Phm - chr2R 23986646 intron,5` UTR Phm -,CG30178 + chr2R_13_23985001 chr2R_23985001 RAL-502 1211 chr2R 24031362 24031413 chr2R 24031466 24031517 27 102 6.0 4.0 5.0 4.5 155 chr2R 24031362 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031517 intergenic Chi -,CG30172 - chr2R_27_24030001 chr2R_24030001 RAL-502 1212 chr2R 24077909 24077959 chr2R 24078005 24078055 22 91 4.0 2.5 3.2 5.2 146 chr2R 24077909 3` UTR Mlp60A + chr2R 24077982 3` UTR Mlp60A + chr2R 24078055 3` UTR Mlp60A + chr2R_22_24075001 chr2R_24075001 RAL-502 1213 chr2R 24138290 24138337 chr2R 24138468 24138516 16 178 2.0 7.0 4.5 2.9 226 chr2R 24138290 intergenic CG4065 -,CR44826 + chr2R 24138403 intergenic CR44826 +,CG4065 - chr2R 24138516 intergenic CR44826 +,CG4065 - chr2R_16_24135001 chr2R_24135001 RAL-502 1214 chr2R 24147078 24147096 chr2R 24154644 24154647 412 5 7579 3.0 6.0 4.5 0.9 7569 chr2R 24147078 intron Dat + chr2R 24150862 intron Dat + chr2R 24154647 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-502 1215 chr2R 24177214 24177263 chr2R 24184719 24184768 412 14 7504 4.0 4.0 4.0 2.8 7554 chr2R 24177214 3` UTR Nop60B + chr2R 24180991 intron Nop60B + chr2R 24184768 3` UTR Nop60B + chr2R_14_24180001 chr2R_24180001 RAL-502 1216 chr2R 24228376 24228430 chr2R 24228476 24228513 4 93 4.0 2.5 3.2 1.0 137 chr2R 24228376 intron CG30419 - chr2R 24228444 intron CG30419 - chr2R 24228513 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-502 1217 chr2R 24320167 24320196 chr2R 24320262 24320264 6 85 1.5 1.0 1.2 2.7 97 chr2R 24320167 intergenic not near genes chr2R 24320216 intergenic not near genes chr2R 24320264 intergenic not near genes chr2R_6_24320001 chr2R_24320001 RAL-502 1218 chr2R 24353410 24353446 chr2R 24361791 24361828 roo 4 8382 5.0 2.5 3.8 0.8 8418 chr2R 24353410 intron,intron bs +,CR44811 - chr2R 24357619 intron,intron bs +,CR44811 - chr2R 24361828 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-502 1219 chr2R 24383806 24383849 chr2R 24383907 24383950 20 100 7.0 3.5 5.2 3.2 144 chr2R 24383806 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383950 exon mAChR-A - chr2R_20_24380001 chr2R_24380001 RAL-502 1220 chr2R 24430921 24430925 chr2R 24431029 24431033 5 107 0.0 11.5 5.8 0.7 112 chr2R 24430921 intergenic CG15873 -,Pgam5-2 - chr2R 24430977 intergenic CG15873 -,Pgam5-2 - chr2R 24431033 intergenic Pgam5-2 -,CG15873 - chr2R_5_24430001 chr2R_24430001 RAL-502 1221 chr2R 24430928 24430948 chr2R 24431015 24431047 9 102 0.0 10.0 5.0 1.5 119 chr2R 24430928 intergenic CG15873 -,Pgam5-2 - chr2R 24430988 intergenic CG15873 -,Pgam5-2 - chr2R 24431047 intergenic Pgam5-2 -,CG15873 - chr2R_9_24430001 chr2R_24430001 RAL-502 1222 chr2R 24470369 24470393 chr2R 24470462 24470500 10 103 2.0 7.5 4.8 1.7 131 chr2R 24470369 intron CG13579 + chr2R 24470434 intron CG13579 + chr2R 24470500 intron CG13579 + chr2R_10_24470001 chr2R_24470001 RAL-502 1223 chr2R 24493073 24493084 chr2R 24493179 24493192 5 107 5.0 6.0 5.5 0.8 119 chr2R 24493073 intergenic CG13590 -,CG13589 - chr2R 24493132 intergenic CG13590 -,CG13589 - chr2R 24493192 intergenic CG13590 -,CG13589 - chr2R_5_24490001 chr2R_24490001 RAL-502 1224 chr2R 24509291 24509338 chr2R 24509396 24509438 12 99 7.5 6.5 7.0 1.5 147 chr2R 24509291 intergenic Letm1 - chr2R 24509364 intergenic Letm1 - chr2R 24509438 intergenic Letm1 - chr2R_12_24505001 chr2R_24505001 RAL-502 1225 chr2R 24520590 24520645 chr2R 24520693 24520724 17 96 4.0 7.0 5.5 2.6 134 chr2R 24520590 exon Ir60d + chr2R 24520657 exon Ir60d + chr2R 24520724 exon Ir60d + chr2R_17_24520001 chr2R_24520001 RAL-502 1226 chr2R 24584331 24584350 chr2R 24584427 24584452 4 98 6.0 2.5 4.2 0.8 121 chr2R 24584331 intron pio + chr2R 24584392 intron pio + chr2R 24584452 intron pio + chr2R_4_24580001 chr2R_24580001 RAL-502 1227 chr2R 24584351 24584373 chr2R 24584424 24584464 7 92 3.5 2.0 2.8 1.8 113 chr2R 24584351 intron pio + chr2R 24584408 intron pio + chr2R 24584464 intron pio + chr2R_7_24580001 chr2R_24580001 RAL-502 1228 chr2R 24592941 24592968 chr2R 24593040 24593080 7 111 11.5 3.0 7.2 0.9 139 chr2R 24592941 intron pio + chr2R 24593010 intron pio + chr2R 24593080 intron pio + chr2R_7_24590001 chr2R_24590001 RAL-502 1229 chr2R 24633991 24634025 chr2R 24634073 24634125 12 88 2.5 4.0 3.2 2.9 134 chr2R 24633991 intron CG13594 - chr2R 24634058 intron CG13594 - chr2R 24634125 intron CG13594 - chr2R_12_24630001 chr2R_24630001 RAL-502 1230 chr2R 24636890 24636912 chr2R 24636996 24637018 5 106 7.5 0.0 3.8 1.0 128 chr2R 24636890 intron CG13594 - chr2R 24636954 intron CG13594 - chr2R 24637018 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-502 1231 chr2R 24647554 24647615 chr2R 24655145 24655192 412 6 7582 0.5 6.0 3.2 1.4 7638 chr2R 24647554 intergenic not near genes chr2R 24651373 intergenic not near genes chr2R 24655192 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-502 1232 chr2R 24687653 24687669 chr2R 24687724 24687726 10 90 5.0 10.0 7.5 1.2 73 chr2R 24687653 intergenic Mmp1 - chr2R 24687690 intergenic Mmp1 - chr2R 24687726 intergenic Mmp1 - chr2R_10_24685001 chr2R_24685001 RAL-502 1233 chr2R 24727887 24727915 chr2R 24735415 24735437 mdg1 6 7524 2.5 10.5 6.5 0.8 7550 chr2R 24727887 intron Mid1 - chr2R 24731662 intron Mid1 - chr2R 24735437 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-502 1234 chr2R 24763623 24763643 chr2R 24765586 24765620 G2 9 1969 3.0 5.0 4.0 1.8 1997 chr2R 24763623 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_9_24760001 chr2R_24760001 RAL-502 1235 chr2R 24813400 24813407 chr2R 24813518 24813520 4 116 2.0 1.5 1.8 1.4 120 chr2R 24813400 intergenic not near genes chr2R 24813460 intergenic not near genes chr2R 24813520 intergenic not near genes chr2R_4_24810001 chr2R_24810001 RAL-502 1236 chr2R 24813411 24813446 chr2R 24813515 24813549 12 113 0.0 1.5 0.8 6.7 138 chr2R 24813411 intergenic not near genes chr2R 24813480 intergenic not near genes chr2R 24813549 intergenic not near genes chr2R_12_24810001 chr2R_24810001 RAL-502 1237 chr2R 24859823 24859870 chr2R 24859929 24859976 9 94 3.5 1.5 2.5 2.6 153 chr2R 24859823 5` UTR CR44829 + chr2R 24859900 5` UTR CR44829 + chr2R 24859976 5` UTR CR44829 + chr2R_9_24855001 chr2R_24855001 RAL-502 1238 chr2R 24884033 24884079 chr2R 24884135 24884181 15 102 2.5 4.0 3.2 3.6 148 chr2R 24884033 intron NKAIN + chr2R 24884107 intron NKAIN + chr2R 24884181 intron NKAIN + chr2R_15_24880001 chr2R_24880001 RAL-502 1239 chr2R 25004872 25004920 chr2R 25004970 25005017 11 92 5.0 5.5 5.2 1.8 145 chr2R 25004872 intron zip - chr2R 25004944 intron zip - chr2R 25005017 intron zip - chr2R_11_25000001 chr2R_25000001 RAL-502 1240 chr2R 25014522 25014575 chr2R 25014618 25014670 17 92 3.5 3.5 3.5 3.8 148 chr2R 25014522 intron uzip + chr2R 25014596 intron uzip + chr2R 25014670 intron uzip + chr2R_17_25010001 chr2R_25010001 RAL-502 1241 chr2R 25018324 25018369 chr2R 25018445 25018489 14 113 3.5 7.5 5.5 2.2 165 chr2R 25018324 intron uzip + chr2R 25018406 intron uzip + chr2R 25018489 intron uzip + chr2R_14_25015001 chr2R_25015001 RAL-502 1242 chr2R 25022621 25022673 chr2R 25022725 25022776 18 102 2.0 3.0 2.5 5.1 155 chr2R 25022621 intron uzip + chr2R 25022698 intron uzip + chr2R 25022776 intron uzip + chr2R_18_25020001 chr2R_25020001 RAL-502 1243 chr2R 25101255 25101307 chr2R 25101376 25101429 15 120 6.0 3.5 4.8 2.6 174 chr2R 25101255 intron lov - chr2R 25101342 intron lov - chr2R 25101429 intron lov - chr2R_15_25100001 chr2R_25100001 RAL-502 1244 chr2R 25122941 25122993 chr2R 25123040 25123091 18 96 3.0 2.5 2.8 4.7 150 chr2R 25122941 intron lov - chr2R 25123016 intron lov - chr2R 25123091 intron lov - chr2R_18_25120001 chr2R_25120001 RAL-502 1245 chr2R 25141633 25141682 chr2R 25159342 25159391 roo 16 17709 6.5 5.0 5.8 2.4 17758 chr2R 25141633 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159391 intergenic not near genes chr2R_16_25150001 chr2R_25150001 RAL-502 1246 chr2R 25180750 25180793 chr2R 25180847 25180890 8 97 1.0 1.0 1.0 4.0 140 chr2R 25180750 intergenic not near genes chr2R 25180820 intergenic not near genes chr2R 25180890 intergenic not near genes chr2R_8_25180001 chr2R_25180001 RAL-502 1247 chr2R 25181094 25181136 chr2R 25181210 25181253 6 117 6.5 4.5 5.5 0.9 159 chr2R 25181094 intergenic not near genes chr2R 25181174 intergenic not near genes chr2R 25181253 intergenic not near genes chr2R_6_25180001 chr2R_25180001 RAL-502 1248 chr2R 25193322 25193370 chr2R 25193484 25193534 8 162 3.0 4.0 3.5 1.8 212 chr2R 25193322 intron CG9380 - chr2R 25193428 intron CG9380 - chr2R 25193534 intron CG9380 - chr2R_8_25190001 chr2R_25190001 RAL-502 1249 chr2R 25236012 25236044 chr2R 25236142 25236175 10 131 1.5 1.5 1.5 4.0 163 chr2R 25236012 intron CG9380 - chr2R 25236094 intron CG9380 - chr2R 25236175 intron CG9380 - chr2R_10_25235001 chr2R_25235001 RAL-502 1250 chr3L 68965 69012 chr3L 69072 69113 21 105 6.5 4.5 5.5 3.2 148 chr3L 68965 3` UTR Lsp1gamma + chr3L 69039 intergenic Lsp1gamma +,CR44510 + chr3L 69113 intergenic CR44510 +,Lsp1gamma + chr3L_21_65001 chr3L_65001 RAL-502 1251 chr3L 93792 93823 chr3L 93872 93897 8 86 3.5 5.0 4.2 1.5 105 chr3L 93792 intergenic not near genes chr3L 93844 intergenic not near genes chr3L 93897 intergenic not near genes chr3L_8_90001 chr3L_90001 RAL-502 1252 chr3L 105982 106026 chr3L 106131 106175 6 149 3.0 5.5 4.2 1.2 193 chr3L 105982 intergenic not near genes chr3L 106078 intergenic not near genes chr3L 106175 intergenic not near genes chr3L_6_105001 chr3L_105001 RAL-502 1253 chr3L 108604 108608 chr3L 108767 108770 4 163 3.0 2.5 2.8 1.1 166 chr3L 108604 intergenic not near genes chr3L 108687 intergenic not near genes chr3L 108770 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-502 1254 chr3L 110196 110241 chr3L 119381 119427 roo 8 9184 6.5 4.5 5.5 1.2 9231 chr3L 110196 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119427 intergenic not near genes chr3L_8_110001 chr3L_110001 RAL-502 1255 chr3L 402668 402718 chr3L 409741 409791 297 14 7070 6.5 8.0 7.2 1.7 7123 chr3L 402668 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409791 intergenic not near genes chr3L_14_405001 chr3L_405001 RAL-502 1256 chr3L 456188 456239 chr3L 456287 456337 22 96 5.0 3.5 4.2 4.2 149 chr3L 456188 intron klar - chr3L 456262 intron klar - chr3L 456337 intron klar - chr3L_22_455001 chr3L_455001 RAL-502 1257 chr3L 498496 498515 chr3L 498594 498613 5 98 3.0 2.0 2.5 1.4 117 chr3L 498496 intron klar - chr3L 498554 intron klar - chr3L 498613 intron klar - chr3L_5_495001 chr3L_495001 RAL-502 1258 chr3L 563950 563999 chr3L 564149 564195 20 198 2.0 5.5 3.8 4.2 245 chr3L 563950 intron hipk + chr3L 564072 intron hipk + chr3L 564195 intron hipk + chr3L_20_560001 chr3L_560001 RAL-502 1259 chr3L 651381 651418 chr3L 651475 651526 21 106 4.0 2.5 3.2 5.0 145 chr3L 651381 intergenic Gale +,CG3402 - chr3L 651454 intergenic CG3402 -,Gale + chr3L 651526 intergenic CG3402 -,Gale + chr3L_21_650001 chr3L_650001 RAL-502 1260 chr3L 705879 705891 chr3L 705994 706005 6 116 11.0 4.5 7.8 0.7 126 chr3L 705879 intergenic CG13895 -,CR44514 + chr3L 705942 intergenic CG13895 -,CR44514 + chr3L 706005 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-502 1261 chr3L 705899 705924 chr3L 705992 706040 6 112 5.0 4.5 4.8 1.0 141 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705970 3` UTR CG13895 - chr3L 706040 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-502 1262 chr3L 746473 746523 chr3L 746578 746616 12 104 4.0 6.0 5.0 2.0 143 chr3L 746473 intron hng3 - chr3L 746544 intron hng3 - chr3L 746616 intron hng3 - chr3L_12_745001 chr3L_745001 RAL-502 1263 chr3L 789894 789946 chr3L 790399 790451 roo 12 504 2.0 2.5 2.2 3.8 557 chr3L 789894 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790451 intergenic not near genes chr3L_12_790001 chr3L_790001 RAL-502 1264 chr3L 857978 858023 chr3L 866479 866483 Tirant 4 8483 6.5 4.0 5.2 0.6 8505 chr3L 857978 intergenic not near genes chr3L 862230 intergenic not near genes chr3L 866483 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-502 1265 chr3L 925159 925206 chr3L 932604 932652 mdg1 21 7444 4.5 6.5 5.5 3.2 7493 chr3L 925159 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932652 intron Glut1 + chr3L_21_925001 chr3L_925001 RAL-502 1266 chr3L 933905 933944 chr3L 934028 934067 9 122 4.5 7.0 5.8 1.3 162 chr3L 933905 intron Glut1 + chr3L 933986 intron Glut1 + chr3L 934067 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-502 1267 chr3L 939758 939794 chr3L 940899 940935 jockey 16 1139 7.5 9.5 8.5 1.7 1177 chr3L 939758 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940935 intron Glut1 + chr3L_16_940001 chr3L_940001 RAL-502 1268 chr3L 1015158 1015164 chr3L 1015226 1015253 5 78 0.5 2.0 1.2 2.3 95 chr3L 1015158 intron trio - chr3L 1015206 intron trio - chr3L 1015253 intron trio - chr3L_5_1015001 chr3L_1015001 RAL-502 1269 chr3L 1021580 1021629 chr3L 1021676 1021725 14 86 8.5 6.0 7.2 1.7 145 chr3L 1021580 intron trio - chr3L 1021652 intron trio - chr3L 1021725 intron trio - chr3L_14_1020001 chr3L_1020001 RAL-502 1270 chr3L 1021630 1021630 chr3L 1021669 1021713 5 65 8.5 6.0 7.2 0.6 83 chr3L 1021630 intron trio - chr3L 1021672 intron trio - chr3L 1021713 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-502 1271 chr3L 1109622 1109656 chr3L 1109722 1109764 8 104 6.0 3.5 4.8 1.4 142 chr3L 1109622 intergenic not near genes chr3L 1109693 intergenic not near genes chr3L 1109764 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-502 1272 chr3L 1154128 1154153 chr3L 1163294 1163323 roo 13 9169 5.5 3.5 4.5 2.4 9195 chr3L 1154128 intron bab2 - chr3L 1158726 intron bab2 - chr3L 1163323 intron bab2 - chr3L_13_1155001 chr3L_1155001 RAL-502 1273 chr3L 1219601 1219622 chr3L 1227331 1227355 412 8 7746 1.5 9.0 5.2 1.3 7754 chr3L 1219601 intron mwh + chr3L 1223478 intron mwh + chr3L 1227355 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-502 1274 chr3L 1268135 1268157 chr3L 1268342 1268364 7 206 12.0 0.0 6.0 1.0 229 chr3L 1268135 intron CG9134 + chr3L 1268250 intron CG9134 + chr3L 1268364 intron CG9134 + chr3L_7_1265001 chr3L_1265001 RAL-502 1275 chr3L 1268158 1268178 chr3L 1268338 1268347 6 193 6.0 0.0 3.0 1.5 189 chr3L 1268158 intron CG9134 + chr3L 1268252 intron CG9134 + chr3L 1268347 intron CG9134 + chr3L_6_1265001 chr3L_1265001 RAL-502 1276 chr3L 1286902 1286926 chr3L 1287149 1287183 4 249 5.0 3.0 4.0 0.8 281 chr3L 1286902 intron CG32333 + chr3L 1287042 intron CG32333 + chr3L 1287183 intron CG32333 + chr3L_4_1285001 chr3L_1285001 RAL-502 1277 chr3L 1396725 1396756 chr3L 1396823 1396834 14 99 13.5 10.5 12.0 1.1 109 chr3L 1396725 intron Ptp61F - chr3L 1396780 intron Ptp61F - chr3L 1396834 intron Ptp61F - chr3L_14_1395001 chr3L_1395001 RAL-502 1278 chr3L 1405638 1405644 chr3L 1405737 1405743 4 99 6.0 9.0 7.5 0.5 105 chr3L 1405638 intron Ptp61F - chr3L 1405690 intron Ptp61F - chr3L 1405743 intron Ptp61F - chr3L_4_1405001 chr3L_1405001 RAL-502 1279 chr3L 1415772 1415797 chr3L 1415857 1415874 6 85 2.0 2.0 2.0 2.0 102 chr3L 1415772 intron Ptp61F - chr3L 1415823 intron Ptp61F - chr3L 1415874 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-502 1280 chr3L 1485724 1485736 chr3L 1486915 1486927 1360 6 1191 6.5 11.0 8.8 0.6 1203 chr3L 1485724 intron stet - chr3L 1486326 intron stet - chr3L 1486927 intron stet - chr3L_6_1485001 chr3L_1485001 RAL-502 1281 chr3L 1501987 1502020 chr3L 1502086 1502093 11 94 2.5 4.5 3.5 2.4 106 chr3L 1501987 intron pUf68 - chr3L 1502040 intron pUf68 - chr3L 1502093 intron pUf68 - chr3L_11_1500001 chr3L_1500001 RAL-502 1282 chr3L 1505978 1506026 chr3L 1513592 1513641 17.6 16 7616 6.5 9.5 8.0 1.8 7663 chr3L 1505978 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513641 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-502 1283 chr3L 1552625 1552655 chr3L 1552743 1552789 12 127 3.0 4.0 3.5 2.7 164 chr3L 1552625 exon Cct1 + chr3L 1552707 3` UTR Cct1 + chr3L 1552789 3` UTR Cct1 + chr3L_12_1550001 chr3L_1550001 RAL-502 1284 chr3L 1585906 1585937 chr3L 1586009 1586040 11 102 0.5 0.0 0.2 9.2 134 chr3L 1585906 intron CG13917 + chr3L 1585973 intron CG13917 + chr3L 1586040 intron CG13917 + chr3L_11_1585001 chr3L_1585001 RAL-502 1285 chr3L 1661547 1661595 chr3L 1661649 1661698 13 98 2.5 2.5 2.5 3.7 151 chr3L 1661547 exon CG7971 - chr3L 1661622 intron CG7971 - chr3L 1661698 intron CG7971 - chr3L_13_1660001 chr3L_1660001 RAL-502 1286 chr3L 1688226 1688265 chr3L 1688375 1688413 6 149 6.0 0.0 3.0 1.5 187 chr3L 1688226 intron CG7991 + chr3L 1688320 intron CG7991 + chr3L 1688413 intron CG7991 + chr3L_6_1685001 chr3L_1685001 RAL-502 1287 chr3L 1740836 1740884 chr3L 1741100 1741147 pogo 14 260 4.5 2.0 3.2 3.3 311 chr3L 1740836 intron Gk + chr3L 1740992 intron Gk + chr3L 1741147 intron Gk + chr3L_14_1740001 chr3L_1740001 RAL-502 1288 chr3L 1805680 1805705 chr3L 1805871 1805898 4 191 4.5 2.5 3.5 0.9 218 chr3L 1805680 exon CG42676 + chr3L 1805789 intron CG42676 + chr3L 1805898 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-502 1289 chr3L 1848646 1848668 chr3L 1848726 1848765 6 93 1.5 4.5 3.0 1.5 119 chr3L 1848646 intergenic not near genes chr3L 1848706 intergenic not near genes chr3L 1848765 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-502 1290 chr3L 1882345 1882374 chr3L 1882461 1882488 5 115 4.5 1.5 3.0 1.2 143 chr3L 1882345 intron CG13937 - chr3L 1882416 intron CG13937 - chr3L 1882488 intron CG13937 - chr3L_5_1880001 chr3L_1880001 RAL-502 1291 chr3L 1991099 1991143 chr3L 1991198 1991241 7 97 7.0 2.0 4.5 1.3 142 chr3L 1991099 intergenic not near genes chr3L 1991170 intergenic not near genes chr3L 1991241 intergenic not near genes chr3L_7_1990001 chr3L_1990001 RAL-502 1292 chr3L 2108237 2108272 chr3L 2113461 2113496 copia 9 5224 2.0 4.0 3.0 2.2 5259 chr3L 2108237 intron sls - chr3L 2110866 intron sls - chr3L 2113496 intron sls - chr3L_9_2110001 chr3L_2110001 RAL-502 1293 chr3L 2139187 2139226 chr3L 2139286 2139327 16 95 4.0 5.0 4.5 2.9 140 chr3L 2139187 intron zormin - chr3L 2139257 intron zormin - chr3L 2139327 intron zormin - chr3L_16_2135001 chr3L_2135001 RAL-502 1294 chr3L 2163947 2164101 chr3L 2164064 2164268 13 131 0.5 0.5 0.5 8.7 321 chr3L 2163947 intergenic CG15822 - chr3L 2164108 intergenic CG15822 - chr3L 2164268 intergenic CG15822 - chr3L_13_2160001 chr3L_2160001 RAL-502 1295 chr3L 2168756 2168791 chr3L 2168867 2168902 14 107 6.5 4.5 5.5 2.2 146 chr3L 2168756 exon CG15879 - chr3L 2168829 intron CG15879 - chr3L 2168902 intron CG15879 - chr3L_14_2165001 chr3L_2165001 RAL-502 1296 chr3L 2187596 2187632 chr3L 2187693 2187734 8 95 1.0 4.0 2.5 2.3 138 chr3L 2187596 exon CG13810 + chr3L 2187665 3` UTR CG13810 + chr3L 2187734 intergenic CG13810 + chr3L_8_2185001 chr3L_2185001 RAL-502 1297 chr3L 2199793 2199819 chr3L 2199887 2199915 14 94 0.0 2.0 1.0 7.0 122 chr3L 2199793 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199915 intergenic not near genes chr3L_14_2195001 chr3L_2195001 RAL-502 1298 chr3L 2205393 2205429 chr3L 2205498 2205545 12 112 5.0 1.5 3.2 2.9 152 chr3L 2205393 intergenic not near genes chr3L 2205469 intergenic not near genes chr3L 2205545 intergenic not near genes chr3L_12_2205001 chr3L_2205001 RAL-502 1299 chr3L 2277956 2278010 chr3L 2278172 2278226 18 214 2.5 4.0 3.2 4.3 270 chr3L 2277956 3` UTR yellow-g2 + chr3L 2278091 intergenic yellow-g2 + chr3L 2278226 intergenic yellow-g2 + chr3L_18_2275001 chr3L_2275001 RAL-502 1300 chr3L 2293834 2293841 chr3L 2293932 2293939 4 98 10.5 0.0 5.2 0.6 105 chr3L 2293834 intron MsR2 + chr3L 2293886 intron MsR2 + chr3L 2293939 intron MsR2 + chr3L_4_2290001 chr3L_2290001 RAL-502 1301 chr3L 2307985 2308034 chr3L 2308111 2308159 19 123 7.0 4.5 5.8 2.8 174 chr3L 2307985 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308159 intergenic not near genes chr3L_19_2305001 chr3L_2305001 RAL-502 1302 chr3L 2317551 2317589 chr3L 2319385 2319423 18 1832 2.5 5.5 4.0 3.6 1872 chr3L 2317551 3` UTR CR45427 - chr3L 2318487 intergenic not near genes chr3L 2319423 3` UTR CR45426 - chr3L_18_2315001 chr3L_2315001 RAL-502 1303 chr3L 2380322 2380374 chr3L 2380419 2380470 17 94 7.0 5.5 6.2 2.4 148 chr3L 2380322 intergenic not near genes chr3L 2380396 intergenic not near genes chr3L 2380470 intergenic not near genes chr3L_17_2380001 chr3L_2380001 RAL-502 1304 chr3L 2411322 2411333 chr3L 2411421 2411432 4 99 4.0 4.0 4.0 0.8 110 chr3L 2411322 intron CG45186 + chr3L 2411377 intron CG45186 + chr3L 2411432 intron CG45186 + chr3L_4_2410001 chr3L_2410001 RAL-502 1305 chr3L 2447489 2447527 chr3L 2456665 2456699 roo 9 9167 7.0 6.0 6.5 1.2 9210 chr3L 2447489 intron CG45186 + chr3L 2452094 intron CG45186 + chr3L 2456699 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-502 1306 chr3L 2447529 2447537 chr3L 2456660 2456687 roo 5 9158 5.0 6.0 5.5 0.8 9158 chr3L 2447529 intron CG45186 + chr3L 2452108 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-502 1307 chr3L 2467410 2467424 chr3L 2467648 2467664 4 240 11.5 3.0 7.2 0.5 254 chr3L 2467410 intron CG45186 + chr3L 2467537 intron CG45186 + chr3L 2467664 intron CG45186 + chr3L_4_2465001 chr3L_2465001 RAL-502 1308 chr3L 2467425 2467449 chr3L 2467647 2467691 11 235 6.5 3.0 4.8 1.9 266 chr3L 2467425 intron CG45186 + chr3L 2467558 intron CG45186 + chr3L 2467691 intron CG45186 + chr3L_11_2465001 chr3L_2465001 RAL-502 1309 chr3L 2506353 2506402 chr3L 2506580 2506623 4 226 2.0 2.0 2.0 1.3 270 chr3L 2506353 3` UTR Spn - chr3L 2506488 3` UTR Spn - chr3L 2506623 3` UTR Spn - chr3L_4_2505001 chr3L_2505001 RAL-502 1310 chr3L 2515400 2515417 chr3L 2515501 2515519 15 101 2.0 5.5 3.8 3.1 119 chr3L 2515400 intron Spn - chr3L 2515460 intron Spn - chr3L 2515519 intron Spn - chr3L_15_2515001 chr3L_2515001 RAL-502 1311 chr3L 2533661 2533678 chr3L 2533732 2533745 5 78 4.0 6.0 5.0 0.8 84 chr3L 2533661 intron Spn - chr3L 2533703 intron Spn - chr3L 2533745 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-502 1312 chr3L 2534614 2534641 chr3L 2534717 2534744 10 100 0.0 7.0 3.5 2.2 130 chr3L 2534614 intron Spn - chr3L 2534679 intron Spn - chr3L 2534744 exon Spn - chr3L_10_2530001 chr3L_2530001 RAL-502 1313 chr3L 2561513 2561561 chr3L 2561606 2561657 15 94 2.0 1.0 1.5 6.0 144 chr3L 2561513 intron msn - chr3L 2561585 intron msn - chr3L 2561657 intron msn - chr3L_15_2560001 chr3L_2560001 RAL-502 1314 chr3L 2595558 2595611 chr3L 2595664 2595717 10 101 3.0 3.5 3.2 2.4 159 chr3L 2595558 3` UTR dos + chr3L 2595638 intergenic dos +,CG16984 +,CG12182 - chr3L 2595717 intergenic CG16984 +,CG12182 -,dos + chr3L_10_2595001 chr3L_2595001 RAL-502 1315 chr3L 2617242 2617261 chr3L 2617348 2617367 7 105 1.0 6.5 3.8 1.5 125 chr3L 2617242 intron Pxn - chr3L 2617304 intron Pxn - chr3L 2617367 intron Pxn - chr3L_7_2615001 chr3L_2615001 RAL-502 1316 chr3L 2667879 2667925 chr3L 2667975 2667982 8 87 3.0 5.0 4.0 1.6 103 chr3L 2667879 intron Fife - chr3L 2667930 intron Fife - chr3L 2667982 intron Fife - chr3L_8_2665001 chr3L_2665001 RAL-502 1317 chr3L 2719517 2719559 chr3L 2719639 2719680 8 121 2.0 4.0 3.0 2.0 163 chr3L 2719517 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719680 3` UTR Mrtf - chr3L_8_2715001 chr3L_2715001 RAL-502 1318 chr3L 2795704 2795747 chr3L 2795846 2795890 16 142 4.5 1.5 3.0 4.0 186 chr3L 2795704 intron CG43444 - chr3L 2795797 intron CG43444 - chr3L 2795890 intron CG43444 - chr3L_16_2795001 chr3L_2795001 RAL-502 1319 chr3L 2927838 2927872 chr3L 2936119 2936168 Tirant 8 8294 3.0 1.5 2.2 2.5 8330 chr3L 2927838 intron Shab + chr3L 2932003 intron Shab + chr3L 2936168 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-502 1320 chr3L 2966705 2966718 chr3L 2974150 2974163 mdg1 4 7445 6.0 0.0 3.0 1.0 7458 chr3L 2966705 intergenic not near genes chr3L 2970434 intergenic not near genes chr3L 2974163 intergenic not near genes chr3L_4_2970001 chr3L_2970001 RAL-502 1321 chr3L 2987696 2987728 chr3L 2987791 2987830 13 100 3.5 0.0 1.8 4.6 134 chr3L 2987696 intergenic not near genes chr3L 2987763 intergenic not near genes chr3L 2987830 intergenic not near genes chr3L_13_2985001 chr3L_2985001 RAL-502 1322 chr3L 3040308 3040316 chr3L 3042117 3042125 S-element 4 1809 9.5 0.0 4.8 0.7 1817 chr3L 3040308 3` UTR CG2162 + chr3L 3041216 intergenic not near genes chr3L 3042125 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-502 1323 chr3L 3051727 3051750 chr3L 3051989 3052012 pogo 8 262 6.0 4.0 5.0 1.3 285 chr3L 3051727 3` UTR CG32485 + chr3L 3051870 intergenic CG32485 + chr3L 3052012 intergenic CG32485 + chr3L_8_3050001 chr3L_3050001 RAL-502 1324 chr3L 3104843 3104901 chr3L 3104945 3104994 12 98 0.0 3.0 1.5 4.8 151 chr3L 3104843 intron Cht7 - chr3L 3104918 intron Cht7 - chr3L 3104994 intron Cht7 - chr3L_12_3100001 chr3L_3100001 RAL-502 1325 chr3L 3259824 3259832 chr3L 3259930 3259952 4 116 0.0 6.0 3.0 1.0 128 chr3L 3259824 intron ckd + chr3L 3259888 intron ckd + chr3L 3259952 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-502 1326 chr3L 3281423 3281455 chr3L 3281939 3281968 Doc 5 514 5.5 7.5 6.5 0.7 545 chr3L 3281423 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-502 1327 chr3L 3281456 3281464 chr3L 3281934 3281959 Doc 8 501 4.5 5.5 5.0 1.3 503 chr3L 3281456 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281959 intron CG12017 + chr3L_8_3280001 chr3L_3280001 RAL-502 1328 chr3L 3386277 3386312 chr3L 3386425 3386434 14 146 2.5 4.0 3.2 3.3 157 chr3L 3386277 intergenic not near genes chr3L 3386356 intergenic not near genes chr3L 3386434 intergenic not near genes chr3L_14_3385001 chr3L_3385001 RAL-502 1329 chr3L 3436268 3436315 chr3L 3436367 3436414 16 99 2.5 3.5 3.0 4.0 146 chr3L 3436268 intron eIF5B - chr3L 3436341 intron eIF5B - chr3L 3436414 intron eIF5B - chr3L_16_3435001 chr3L_3435001 RAL-502 1330 chr3L 3475079 3475103 chr3L 3475518 3475558 jockey 9 454 4.0 5.0 4.5 1.6 479 chr3L 3475079 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475558 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-502 1331 chr3L 3484267 3484318 chr3L 3484378 3484428 13 107 7.0 4.0 5.5 2.0 161 chr3L 3484267 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484428 intron,intron CG42324 +,CG43074 - chr3L_13_3480001 chr3L_3480001 RAL-502 1332 chr3L 3494176 3494204 chr3L 3494273 3494301 7 96 1.0 5.5 3.2 1.7 125 chr3L 3494176 intron CG42324 + chr3L 3494238 intron CG42324 + chr3L 3494301 intron CG42324 + chr3L_7_3490001 chr3L_3490001 RAL-502 1333 chr3L 3494755 3494780 chr3L 3494851 3494870 14 96 2.0 9.5 5.8 2.1 115 chr3L 3494755 intron CG42324 + chr3L 3494812 intron CG42324 + chr3L 3494870 intron CG42324 + chr3L_14_3490001 chr3L_3490001 RAL-502 1334 chr3L 3581729 3581773 chr3L 3581832 3581878 8 101 2.0 4.5 3.2 1.9 149 chr3L 3581729 intron Eip63E + chr3L 3581804 intron Eip63E + chr3L 3581878 intron Eip63E + chr3L_8_3580001 chr3L_3580001 RAL-502 1335 chr3L 3601285 3601323 chr3L 3606616 3606654 copia 13 5329 4.5 7.5 6.0 1.9 5369 chr3L 3601285 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606654 intron Eip63E + chr3L_13_3600001 chr3L_3600001 RAL-502 1336 chr3L 3627215 3627256 chr3L 3627340 3627381 15 125 3.5 4.0 3.8 3.1 166 chr3L 3627215 intron dar1 + chr3L 3627298 intron dar1 + chr3L 3627381 intron dar1 + chr3L_15_3625001 chr3L_3625001 RAL-502 1337 chr3L 3695478 3695530 chr3L 3695576 3695629 10 98 2.5 0.0 1.2 4.5 151 chr3L 3695478 intergenic not near genes chr3L 3695554 intergenic not near genes chr3L 3695629 intergenic not near genes chr3L_10_3695001 chr3L_3695001 RAL-502 1338 chr3L 3720949 3720976 chr3L 3721051 3721078 9 101 8.5 4.0 6.2 1.2 129 chr3L 3720949 intron CG32264 - chr3L 3721014 intron CG32264 - chr3L 3721078 intron CG32264 - chr3L_9_3720001 chr3L_3720001 RAL-502 1339 chr3L 3766724 3766745 chr3L 3766830 3766851 7 106 6.0 0.0 3.0 1.8 127 chr3L 3766724 intron CG32264 - chr3L 3766788 intron CG32264 - chr3L 3766851 intron CG32264 - chr3L_7_3765001 chr3L_3765001 RAL-502 1340 chr3L 3783253 3783276 chr3L 3783348 3783363 6 94 4.5 1.5 3.0 1.5 110 chr3L 3783253 intron CG32264 - chr3L 3783308 intron CG32264 - chr3L 3783363 intron CG32264 - chr3L_6_3780001 chr3L_3780001 RAL-502 1341 chr3L 3815037 3815083 chr3L 3815134 3815182 14 99 6.0 1.5 3.8 2.9 145 chr3L 3815037 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815182 intron,intron Scsalpha +,CR43932 - chr3L_14_3815001 chr3L_3815001 RAL-502 1342 chr3L 3833720 3833754 chr3L 3833981 3834013 pogo 4 260 5.5 1.0 3.2 1.0 293 chr3L 3833720 intron enc + chr3L 3833866 intron enc + chr3L 3834013 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-502 1343 chr3L 3864825 3864841 chr3L 3864928 3864942 6 103 2.0 1.5 1.8 2.1 117 chr3L 3864825 intergenic CR45379 - chr3L 3864884 intergenic CR45379 - chr3L 3864942 intergenic not near genes chr3L_6_3860001 chr3L_3860001 RAL-502 1344 chr3L 3889112 3889144 chr3L 3889215 3889247 11 103 0.0 2.5 1.2 5.0 135 chr3L 3889112 intergenic not near genes chr3L 3889180 intergenic not near genes chr3L 3889247 intergenic not near genes chr3L_11_3885001 chr3L_3885001 RAL-502 1345 chr3L 3914158 3914209 chr3L 3914263 3914313 25 101 4.0 6.0 5.0 4.2 155 chr3L 3914158 intron Eip63F-1 - chr3L 3914236 intron Eip63F-1 - chr3L 3914313 intron Eip63F-1 - chr3L_25_3910001 chr3L_3910001 RAL-502 1346 chr3L 3935806 3935812 chr3L 3935904 3935910 4 98 0.0 3.0 1.5 1.6 104 chr3L 3935806 5` UTR Eip63F-2 + chr3L 3935858 5` UTR Eip63F-2 + chr3L 3935910 5` UTR Eip63F-2 + chr3L_4_3935001 chr3L_3935001 RAL-502 1347 chr3L 4015727 4015733 chr3L 4015829 4015836 5 102 8.5 5.0 6.8 0.6 109 chr3L 4015727 intergenic not near genes chr3L 4015782 intergenic not near genes chr3L 4015836 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-502 1348 chr3L 4015742 4015761 chr3L 4015818 4015864 10 94 6.0 2.5 4.2 1.9 122 chr3L 4015742 intergenic not near genes chr3L 4015803 intergenic not near genes chr3L 4015864 intergenic not near genes chr3L_10_4015001 chr3L_4015001 RAL-502 1349 chr3L 4052628 4052631 chr3L 4052724 4052765 5 124 1.5 9.0 5.2 0.8 137 chr3L 4052628 intron CG1136 + chr3L 4052696 intron CG1136 + chr3L 4052765 intron CG1136 + chr3L_5_4050001 chr3L_4050001 RAL-502 1350 chr3L 4146803 4146831 chr3L 4146899 4146926 8 100 0.0 3.0 1.5 3.2 123 chr3L 4146803 intergenic not near genes chr3L 4146864 intergenic not near genes chr3L 4146926 intergenic not near genes chr3L_8_4145001 chr3L_4145001 RAL-502 1351 chr3L 4195125 4195173 chr3L 4195248 4195294 7 122 4.0 8.0 6.0 1.0 169 chr3L 4195125 exon CG43367 + chr3L 4195210 intron CG43367 + chr3L 4195294 intron CG43367 + chr3L_7_4195001 chr3L_4195001 RAL-502 1352 chr3L 4229752 4229767 chr3L 4229828 4229839 5 79 4.0 4.0 4.0 1.0 87 chr3L 4229752 intron ImpL2 - chr3L 4229796 intron ImpL2 - chr3L 4229839 intron ImpL2 - chr3L_5_4225001 chr3L_4225001 RAL-502 1353 chr3L 4328735 4328765 chr3L 4336252 4336281 412 8 7516 6.0 4.5 5.2 1.3 7546 chr3L 4328735 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336281 exon Cip4 - chr3L_8_4330001 chr3L_4330001 RAL-502 1354 chr3L 4343491 4343519 chr3L 4343587 4343615 13 96 1.5 3.5 2.5 3.7 124 chr3L 4343491 intron Cip4 - chr3L 4343553 intron Cip4 - chr3L 4343615 intron Cip4 - chr3L_13_4340001 chr3L_4340001 RAL-502 1355 chr3L 4344872 4345062 chr3L 4344999 4345157 5 102 0.0 0.0 0.0 5.0 285 chr3L 4344872 intron Cip4 - chr3L 4345014 intron Cip4 - chr3L 4345157 intron Cip4 - chr3L_5_4345001 chr3L_4345001 RAL-502 1356 chr3L 4364205 4364228 chr3L 4364314 4364336 4 109 1.0 2.5 1.8 1.4 131 chr3L 4364205 intergenic Cip4 -,mRpS6 + chr3L 4364270 intergenic Cip4 -,mRpS6 + chr3L 4364336 intergenic mRpS6 +,Cip4 - chr3L_4_4360001 chr3L_4360001 RAL-502 1357 chr3L 4440734 4440753 chr3L 4440832 4440853 4 98 2.0 0.5 1.2 1.8 119 chr3L 4440734 intergenic not near genes chr3L 4440794 intergenic not near genes chr3L 4440853 intergenic not near genes chr3L_4_4440001 chr3L_4440001 RAL-502 1358 chr3L 4494603 4494651 chr3L 4494751 4494775 8 143 6.0 0.0 3.0 2.0 172 chr3L 4494603 intron CR44709 - chr3L 4494689 3` UTR CR44709 - chr3L 4494775 3` UTR CR44709 - chr3L_8_4490001 chr3L_4490001 RAL-502 1359 chr3L 4552778 4552784 chr3L 4552885 4552891 4 107 7.5 9.5 8.5 0.4 113 chr3L 4552778 3` UTR CG11357 + chr3L 4552834 3` UTR CG11357 + chr3L 4552891 3` UTR CG11357 + chr3L_4_4550001 chr3L_4550001 RAL-502 1360 chr3L 4553753 4553781 chr3L 4553871 4553900 7 119 1.0 0.0 0.5 4.7 147 chr3L 4553753 intergenic CG11357 + chr3L 4553826 intergenic CG11357 + chr3L 4553900 intergenic CG11357 + chr3L_7_4550001 chr3L_4550001 RAL-502 1361 chr3L 4554122 4554153 chr3L 4554277 4554303 16 155 3.0 2.0 2.5 4.6 181 chr3L 4554122 intergenic CG33777 - chr3L 4554212 intergenic CG33777 - chr3L 4554303 intergenic CG33777 - chr3L_16_4550001 chr3L_4550001 RAL-502 1362 chr3L 4597193 4597245 chr3L 4597295 4597322 16 95 8.0 3.5 5.8 2.4 129 chr3L 4597193 intron Src64B - chr3L 4597258 intron Src64B - chr3L 4597322 intron Src64B - chr3L_16_4595001 chr3L_4595001 RAL-502 1363 chr3L 4617032 4617089 chr3L 4617208 4617255 13 171 3.5 6.0 4.8 2.2 223 chr3L 4617032 intron Src64B - chr3L 4617144 intron Src64B - chr3L 4617255 intron Src64B - chr3L_13_4615001 chr3L_4615001 RAL-502 1364 chr3L 4725913 4725941 chr3L 4726021 4726026 8 97 2.5 4.5 3.5 1.8 113 chr3L 4725913 intron RhoGEF64C + chr3L 4725970 intron RhoGEF64C + chr3L 4726026 intron RhoGEF64C + chr3L_8_4725001 chr3L_4725001 RAL-502 1365 chr3L 4748683 4748732 chr3L 4748792 4748824 14 107 3.0 1.0 2.0 4.7 141 chr3L 4748683 intron RhoGEF64C + chr3L 4748754 intron RhoGEF64C + chr3L 4748824 intron RhoGEF64C + chr3L_14_4745001 chr3L_4745001 RAL-502 1366 chr3L 4754745 4754774 chr3L 4754833 4754870 7 91 2.5 4.0 3.2 1.7 125 chr3L 4754745 intron RhoGEF64C + chr3L 4754808 intron RhoGEF64C + chr3L 4754870 intron RhoGEF64C + chr3L_7_4750001 chr3L_4750001 RAL-502 1367 chr3L 4782084 4782123 chr3L 4782204 4782222 11 117 2.0 1.5 1.8 3.9 138 chr3L 4782084 intron RhoGEF64C + chr3L 4782153 intron RhoGEF64C + chr3L 4782222 intron RhoGEF64C + chr3L_11_4780001 chr3L_4780001 RAL-502 1368 chr3L 4784955 4784990 chr3L 4785168 4785213 11 221 1.0 3.0 2.0 3.7 258 chr3L 4784955 intron RhoGEF64C + chr3L 4785084 intron RhoGEF64C + chr3L 4785213 intron RhoGEF64C + chr3L_11_4785001 chr3L_4785001 RAL-502 1369 chr3L 4839088 4839102 chr3L 4839212 4839220 4 119 5.0 0.0 2.5 1.1 132 chr3L 4839088 intron CG13707 - chr3L 4839154 intron CG13707 - chr3L 4839220 intron CG13707 - chr3L_4_4835001 chr3L_4835001 RAL-502 1370 chr3L 4840375 4840422 chr3L 4840504 4840551 8 126 0.0 3.5 1.8 2.9 176 chr3L 4840375 intergenic CG13707 - chr3L 4840463 intergenic CG13707 - chr3L 4840551 intergenic CG13707 - chr3L_8_4840001 chr3L_4840001 RAL-502 1371 chr3L 4842752 4842785 chr3L 24763633 24763634 4 19920871 7.0 14.5 10.8 0.3 19920882 chr3L 4842752 intergenic not near genes chr3L 14803193 intron gnu - chr3L 24763634 intron scro + chr3L_4_14800001 chr3L_14800001 RAL-502 1372 chr3L 4858286 4858320 chr3L 4858396 4858420 9 99 9.5 5.0 7.2 1.1 134 chr3L 4858286 intergenic not near genes chr3L 4858353 intergenic not near genes chr3L 4858420 intergenic not near genes chr3L_9_4855001 chr3L_4855001 RAL-502 1373 chr3L 4858326 4858336 chr3L 4858395 4858444 10 100 4.5 4.5 4.5 1.8 118 chr3L 4858326 intergenic not near genes chr3L 4858385 intergenic not near genes chr3L 4858444 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-502 1374 chr3L 4901117 4901157 chr3L 4907323 4907338 diver 12 6204 6.5 7.0 6.8 1.5 6221 chr3L 4901117 intergenic CG13704 + chr3L 4904228 intergenic not near genes chr3L 4907338 intergenic not near genes chr3L_12_4900001 chr3L_4900001 RAL-502 1375 chr3L 4947112 4947157 chr3L 4947203 4947254 10 96 3.0 4.0 3.5 2.2 142 chr3L 4947112 intron Con - chr3L 4947183 intron Con - chr3L 4947254 intron Con - chr3L_10_4945001 chr3L_4945001 RAL-502 1376 chr3L 4985354 4985380 chr3L 4985453 4985473 10 98 4.0 1.5 2.8 2.6 119 chr3L 4985354 intron Con - chr3L 4985414 intron Con - chr3L 4985473 intron Con - chr3L_10_4985001 chr3L_4985001 RAL-502 1377 chr3L 5024763 5024799 chr3L 5024869 5024869 9 104 4.5 3.0 3.8 1.9 106 chr3L 5024763 intron Con - chr3L 5024816 intron Con - chr3L 5024869 intron Con - chr3L_9_5020001 chr3L_5020001 RAL-502 1378 chr3L 5034143 5034189 chr3L 5043315 5043347 roo 10 9166 4.5 3.0 3.8 2.1 9204 chr3L 5034143 intron Con - chr3L 5038745 intron Con - chr3L 5043347 intron Con - chr3L_10_5035001 chr3L_5035001 RAL-502 1379 chr3L 5045436 5045479 chr3L 5050237 5050280 Doc 9 4800 6.5 3.0 4.8 1.6 4844 chr3L 5045436 intron Con - chr3L 5047858 intron Con - chr3L 5050280 intron Con - chr3L_9_5045001 chr3L_5045001 RAL-502 1380 chr3L 5066283 5066327 chr3L 5066402 5066443 5 118 3.0 1.0 2.0 1.7 160 chr3L 5066283 intron Con - chr3L 5066363 intron Con - chr3L 5066443 intron Con - chr3L_5_5065001 chr3L_5065001 RAL-502 1381 chr3L 5101186 5101227 chr3L 5101282 5101327 10 99 2.0 2.5 2.2 3.1 141 chr3L 5101186 intergenic not near genes chr3L 5101256 intergenic not near genes chr3L 5101327 intergenic not near genes chr3L_10_5100001 chr3L_5100001 RAL-502 1382 chr3L 5104464 5104501 chr3L 5124618 5124654 7 20152 4.5 6.5 5.5 1.1 20190 chr3L 5104464 intergenic not near genes chr3L 5114559 intergenic not near genes chr3L 5124654 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-502 1383 chr3L 5164636 5164670 chr3L 5164726 5164766 7 93 4.5 3.0 3.8 1.5 130 chr3L 5164636 intron shep - chr3L 5164701 intron shep - chr3L 5164766 intron shep - chr3L_7_5160001 chr3L_5160001 RAL-502 1384 chr3L 5212247 5212270 chr3L 5212320 5212324 9 92 2.5 6.5 4.5 1.6 77 chr3L 5212247 intron shep - chr3L 5212286 intron shep - chr3L 5212324 intron shep - chr3L_9_5210001 chr3L_5210001 RAL-502 1385 chr3L 5250069 5250105 chr3L 5250167 5250202 11 98 1.5 3.0 2.2 3.4 133 chr3L 5250069 intron shep - chr3L 5250136 intron shep - chr3L 5250202 intron shep - chr3L_11_5250001 chr3L_5250001 RAL-502 1386 chr3L 5261146 5261174 chr3L 5261245 5261273 9 98 6.0 2.5 4.2 1.7 127 chr3L 5261146 intron shep - chr3L 5261210 intron shep - chr3L 5261273 intron shep - chr3L_9_5260001 chr3L_5260001 RAL-502 1387 chr3L 5321064 5321110 chr3L 5321155 5321194 12 90 2.0 6.5 4.2 2.3 130 chr3L 5321064 intergenic not near genes chr3L 5321129 intergenic not near genes chr3L 5321194 intergenic not near genes chr3L_12_5320001 chr3L_5320001 RAL-502 1388 chr3L 5327454 5327478 chr3L 5327559 5327583 4 105 2.5 4.5 3.5 0.9 129 chr3L 5327454 intergenic not near genes chr3L 5327518 intergenic not near genes chr3L 5327583 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-502 1389 chr3L 5388191 5388231 chr3L 5388525 5388574 14 339 2.5 6.0 4.2 2.7 383 chr3L 5388191 intergenic not near genes chr3L 5388382 intergenic not near genes chr3L 5388574 intergenic not near genes chr3L_14_5385001 chr3L_5385001 RAL-502 1390 chr3L 5449520 5449557 chr3L 5449617 5449656 8 98 3.5 4.5 4.0 1.6 136 chr3L 5449520 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449656 intergenic not near genes chr3L_8_5445001 chr3L_5445001 RAL-502 1391 chr3L 5485035 5485075 chr3L 5485136 5485177 11 102 4.0 3.5 3.8 2.3 142 chr3L 5485035 intergenic not near genes chr3L 5485106 intergenic not near genes chr3L 5485177 intergenic not near genes chr3L_11_5485001 chr3L_5485001 RAL-502 1392 chr3L 5486030 5486070 chr3L 5486140 5486180 9 109 4.5 0.5 2.5 2.6 150 chr3L 5486030 intergenic not near genes chr3L 5486105 intergenic not near genes chr3L 5486180 intergenic not near genes chr3L_9_5485001 chr3L_5485001 RAL-502 1393 chr3L 5504111 5504116 chr3L 5504209 5504209 4 97 5.5 6.5 6.0 0.6 98 chr3L 5504111 exon CG34342 - chr3L 5504160 intron CG34342 - chr3L 5504209 intron CG34342 - chr3L_4_5500001 chr3L_5500001 RAL-502 1394 chr3L 5504539 5504570 chr3L 5504637 5504667 11 97 6.5 1.5 4.0 2.2 128 chr3L 5504539 intron CG34342 - chr3L 5504603 intron CG34342 - chr3L 5504667 intron CG34342 - chr3L_11_5500001 chr3L_5500001 RAL-502 1395 chr3L 5516392 5516441 chr3L 5516503 5516556 14 111 2.5 2.5 2.5 4.0 164 chr3L 5516392 intron Lkr - chr3L 5516474 intron Lkr - chr3L 5516556 intron Lkr - chr3L_14_5515001 chr3L_5515001 RAL-502 1396 chr3L 5537708 5537752 chr3L 5538067 5538114 jockey 13 355 3.5 8.0 5.8 1.9 406 chr3L 5537708 intergenic not near genes chr3L 5537911 intergenic CG10625 - chr3L 5538114 intergenic CG10625 - chr3L_13_5535001 chr3L_5535001 RAL-502 1397 chr3L 5558334 5558385 chr3L 5558442 5558492 18 107 3.5 3.0 3.2 4.3 158 chr3L 5558334 intergenic not near genes chr3L 5558413 intergenic not near genes chr3L 5558492 intergenic not near genes chr3L_18_5555001 chr3L_5555001 RAL-502 1398 chr3L 5613482 5613500 chr3L 5613629 5613647 5 146 4.0 6.0 5.0 0.8 165 chr3L 5613482 intergenic not near genes chr3L 5613564 intergenic not near genes chr3L 5613647 intergenic not near genes chr3L_5_5610001 chr3L_5610001 RAL-502 1399 chr3L 5801177 5801208 chr3L 5801350 5801367 9 171 1.5 5.5 3.5 2.0 190 chr3L 5801177 intron S6k - chr3L 5801272 intron S6k - chr3L 5801367 intron S6k - chr3L_9_5800001 chr3L_5800001 RAL-502 1400 chr3L 5831294 5831314 chr3L 5831420 5831440 9 126 2.0 0.0 1.0 4.5 146 chr3L 5831294 intron vn - chr3L 5831367 intron vn - chr3L 5831440 intron vn - chr3L_9_5830001 chr3L_5830001 RAL-502 1401 chr3L 5884305 5884341 chr3L 5884401 5884437 6 89 2.5 5.5 4.0 1.2 132 chr3L 5884305 intergenic CG13287 + chr3L 5884371 intergenic CG13287 + chr3L 5884437 intergenic CG13287 + chr3L_6_5880001 chr3L_5880001 RAL-502 1402 chr3L 5886396 5886440 chr3L 5886489 5886515 12 93 5.0 8.0 6.5 1.6 119 chr3L 5886396 intergenic not near genes chr3L 5886456 intergenic not near genes chr3L 5886515 intergenic not near genes chr3L_12_5885001 chr3L_5885001 RAL-502 1403 chr3L 5902669 5902717 chr3L 5902786 5902835 12 114 6.0 2.0 4.0 2.4 166 chr3L 5902669 intergenic QC -,CG32413 - chr3L 5902752 intergenic CG32413 -,QC - chr3L 5902835 intergenic CG32413 -,QC - chr3L_12_5900001 chr3L_5900001 RAL-502 1404 chr3L 5910013 5910055 chr3L 5910274 5910316 pogo 11 260 3.5 7.5 5.5 1.7 303 chr3L 5910013 intron CG13288 + chr3L 5910164 intron CG13288 + chr3L 5910316 intron CG13288 + chr3L_11_5910001 chr3L_5910001 RAL-502 1405 chr3L 5926314 5926348 chr3L 5926506 5926547 BS 9 197 3.0 4.0 3.5 2.0 233 chr3L 5926314 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926547 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-502 1406 chr3L 6022219 6022260 chr3L 6022323 6022357 11 99 5.0 0.0 2.5 3.1 138 chr3L 6022219 intron PVRAP + chr3L 6022288 intron PVRAP + chr3L 6022357 intron PVRAP + chr3L_11_6020001 chr3L_6020001 RAL-502 1407 chr3L 6040345 6040394 chr3L 6042721 6042770 Doc 15 2372 6.0 5.0 5.5 2.3 2425 chr3L 6040345 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042770 intergenic not near genes chr3L_15_6040001 chr3L_6040001 RAL-502 1408 chr3L 6052125 6052144 chr3L 6052231 6052247 4 105 0.0 4.5 2.2 1.2 122 chr3L 6052125 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052186 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052247 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-502 1409 chr3L 6220897 6220948 chr3L 6230069 6230094 roo 24 9169 4.0 4.5 4.2 4.6 9197 chr3L 6220897 5` UTR pncr008:3L + chr3L 6225496 intergenic not near genes chr3L 6230094 intergenic not near genes chr3L_24_6225001 chr3L_6225001 RAL-502 1410 chr3L 6278194 6278234 chr3L 6278290 6278291 9 83 5.5 0.0 2.8 2.4 97 chr3L 6278194 intergenic not near genes chr3L 6278242 intergenic not near genes chr3L 6278291 intergenic not near genes chr3L_9_6275001 chr3L_6275001 RAL-502 1411 chr3L 6284937 6284978 chr3L 6285051 6285092 12 114 3.5 4.0 3.8 2.5 155 chr3L 6284937 intergenic not near genes chr3L 6285014 intergenic not near genes chr3L 6285092 intergenic not near genes chr3L_12_6285001 chr3L_6285001 RAL-502 1412 chr3L 6335008 6335012 chr3L 6335498 6335503 297 4 490 6.0 6.5 6.2 0.6 495 chr3L 6335008 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335503 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-502 1413 chr3L 6353366 6353408 chr3L 6353466 6353506 6 94 1.5 7.5 4.5 1.1 140 chr3L 6353366 intergenic not near genes chr3L 6353436 intergenic not near genes chr3L 6353506 intergenic not near genes chr3L_6_6350001 chr3L_6350001 RAL-502 1414 chr3L 6369764 6369768 chr3L 6369888 6369891 4 124 6.0 0.5 3.2 1.0 127 chr3L 6369764 intergenic CR45419 - chr3L 6369828 intergenic CR45419 - chr3L 6369891 intergenic CR45419 - chr3L_4_6365001 chr3L_6365001 RAL-502 1415 chr3L 6405646 6405680 chr3L 6432130 6432164 roo 7 26484 5.5 4.5 5.0 1.2 26518 chr3L 6405646 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432164 intron CG42747 + chr3L_7_6415001 chr3L_6415001 RAL-502 1416 chr3L 6481968 6481989 chr3L 6482061 6482084 15 98 10.0 2.5 6.2 2.1 116 chr3L 6481968 intron CG42747 + chr3L 6482026 intron CG42747 + chr3L 6482084 intron CG42747 + chr3L_15_6480001 chr3L_6480001 RAL-502 1417 chr3L 6610183 6610218 chr3L 6610297 6610306 9 113 6.0 7.0 6.5 1.2 123 chr3L 6610183 intron CG8398 + chr3L 6610244 intron CG8398 + chr3L 6610306 intron CG8398 + chr3L_9_6610001 chr3L_6610001 RAL-502 1418 chr3L 6620594 6620602 chr3L 6621053 6621062 Rt1c 4 460 6.0 13.5 9.8 0.4 468 chr3L 6620594 intergenic not near genes chr3L 6620828 intergenic not near genes chr3L 6621062 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-502 1419 chr3L 6646052 6646085 chr3L 6646473 6646509 7 431 1.5 1.5 1.5 2.8 457 chr3L 6646052 intergenic not near genes chr3L 6646280 intergenic not near genes chr3L 6646509 intergenic not near genes chr3L_7_6645001 chr3L_6645001 RAL-502 1420 chr3L 6647357 6647402 chr3L 6647460 6647505 22 100 2.0 5.5 3.8 4.6 148 chr3L 6647357 intergenic not near genes chr3L 6647431 intergenic not near genes chr3L 6647505 intergenic not near genes chr3L_22_6645001 chr3L_6645001 RAL-502 1421 chr3L 6798998 6799092 chr3L 6799073 6799178 9 97 0.0 0.0 0.0 9.0 180 chr3L 6798998 intergenic not near genes chr3L 6799088 intergenic not near genes chr3L 6799178 intergenic not near genes chr3L_9_6795001 chr3L_6795001 RAL-502 1422 chr3L 6820623 6820632 chr3L 6820725 6820736 4 103 4.0 5.0 4.5 0.7 113 chr3L 6820623 intergenic not near genes chr3L 6820680 intergenic not near genes chr3L 6820736 intergenic not near genes chr3L_4_6820001 chr3L_6820001 RAL-502 1423 chr3L 6855916 6855946 chr3L 6860720 6860739 Doc 8 4796 4.5 4.5 4.5 1.5 4823 chr3L 6855916 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860739 intergenic not near genes chr3L_8_6855001 chr3L_6855001 RAL-502 1424 chr3L 6868702 6868743 chr3L 6868800 6868836 6 97 0.0 3.0 1.5 2.4 134 chr3L 6868702 intergenic not near genes chr3L 6868769 intergenic not near genes chr3L 6868836 intergenic not near genes chr3L_6_6865001 chr3L_6865001 RAL-502 1425 chr3L 6875219 6875250 chr3L 6875316 6875337 8 94 3.0 0.0 1.5 3.2 118 chr3L 6875219 intergenic not near genes chr3L 6875278 intergenic not near genes chr3L 6875337 intergenic not near genes chr3L_8_6875001 chr3L_6875001 RAL-502 1426 chr3L 6887495 6887537 chr3L 6895007 6895049 roo 9 7512 0.5 2.0 1.2 4.1 7554 chr3L 6887495 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895049 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-502 1427 chr3L 6907997 6908047 chr3L 6908102 6908145 8 100 6.0 0.0 3.0 2.0 148 chr3L 6907997 intergenic not near genes chr3L 6908071 intergenic not near genes chr3L 6908145 intergenic not near genes chr3L_8_6905001 chr3L_6905001 RAL-502 1428 chr3L 6958975 6958993 chr3L 6963560 6963583 6 4580 21.5 29.5 25.5 0.2 4608 chr3L 6958975 exon Surf1 + chr3L 6961279 exon sgl - chr3L 6963583 intron sgl - chr3L_6_6960001 chr3L_6960001 RAL-502 1429 chr3L 6994871 6994905 chr3L 6995501 6995536 BS 12 630 0.5 4.5 2.5 3.4 665 chr3L 6994871 intergenic bin + chr3L 6995204 intergenic not near genes chr3L 6995536 intergenic not near genes chr3L_12_6995001 chr3L_6995001 RAL-502 1430 chr3L 7033164 7033200 chr3L 7033251 7033302 10 86 6.0 5.5 5.8 1.5 138 chr3L 7033164 intron Mp + chr3L 7033233 intron Mp + chr3L 7033302 intron Mp + chr3L_10_7030001 chr3L_7030001 RAL-502 1431 chr3L 7112580 7112604 chr3L 7112685 7112707 5 105 6.5 4.5 5.5 0.8 127 chr3L 7112580 intron form3 + chr3L 7112644 intron form3 + chr3L 7112707 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-502 1432 chr3L 7129929 7129971 chr3L 7130138 7130183 BS 6 211 2.0 2.0 2.0 2.0 254 chr3L 7129929 intergenic CG15829 + chr3L 7130056 intergenic CG15829 + chr3L 7130183 intergenic not near genes chr3L_6_7130001 chr3L_7130001 RAL-502 1433 chr3L 7187399 7187409 chr3L 7187501 7187506 4 101 0.0 0.0 0.0 4.0 107 chr3L 7187399 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187506 intron Dscam2 - chr3L_4_7185001 chr3L_7185001 RAL-502 1434 chr3L 7244944 7244965 chr3L 7245023 7245042 6 80 3.5 2.5 3.0 1.5 98 chr3L 7244944 exon mei-P22 + chr3L 7244993 exon mei-P22 + chr3L 7245042 exon mei-P22 + chr3L_6_7240001 chr3L_7240001 RAL-502 1435 chr3L 7377318 7377340 chr3L 7380421 7380464 297 7 3113 4.5 5.5 5.0 1.2 3146 chr3L 7377318 intron SMSr - chr3L 7378891 intron SMSr - chr3L 7380464 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-502 1436 chr3L 7450680 7450714 chr3L 7450783 7450814 7 101 4.0 3.0 3.5 1.6 134 chr3L 7450680 intron CG42458 + chr3L 7450747 intron CG42458 + chr3L 7450814 intron CG42458 + chr3L_7_7450001 chr3L_7450001 RAL-502 1437 chr3L 7498757 7498791 chr3L 7503553 7503571 F-element 6 4793 4.0 3.0 3.5 1.3 4814 chr3L 7498757 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503571 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-502 1438 chr3L 7524143 7524170 chr3L 7524260 7524287 12 117 4.0 3.5 3.8 2.5 144 chr3L 7524143 intron ltl + chr3L 7524215 intron ltl + chr3L 7524287 intron ltl + chr3L_12_7520001 chr3L_7520001 RAL-502 1439 chr3L 7591149 7591174 chr3L 7591237 7591255 9 96 4.0 3.5 3.8 1.9 106 chr3L 7591149 intergenic CG7716 - chr3L 7591202 intergenic CG7716 - chr3L 7591255 intergenic CG7716 - chr3L_9_7590001 chr3L_7590001 RAL-502 1440 chr3L 7727564 7727609 chr3L 7727661 7727690 11 94 7.5 5.0 6.2 1.5 126 chr3L 7727564 intron CG32373 + chr3L 7727627 intron CG32373 + chr3L 7727690 intron CG32373 + chr3L_11_7725001 chr3L_7725001 RAL-502 1441 chr3L 7749470 7749471 chr3L 11777678 11777678 7 4028208 17.0 9.5 13.2 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_9760001 chr3L_9760001 RAL-502 1442 chr3L 7767554 7767592 chr3L 7767692 7767729 7 143 4.5 12.5 8.5 0.7 175 chr3L 7767554 intron,exon Clk -,CG32371 - chr3L 7767642 intron,exon Clk -,CG32371 - chr3L 7767729 intron,exon Clk -,CG32371 - chr3L_7_7765001 chr3L_7765001 RAL-502 1443 chr3L 7793697 7793730 chr3L 7800769 7800800 297 11 7071 5.5 6.0 5.8 1.6 7103 chr3L 7793697 intron CG32369 - chr3L 7797248 intron CG32369 - chr3L 7800800 intron CG32369 - chr3L_11_7795001 chr3L_7795001 RAL-502 1444 chr3L 7841447 7841479 chr3L 7841539 7841561 13 99 4.5 5.5 5.0 2.2 114 chr3L 7841447 intron Pdp1 - chr3L 7841504 intron Pdp1 - chr3L 7841561 intron Pdp1 - chr3L_13_7840001 chr3L_7840001 RAL-502 1445 chr3L 7876087 7876128 chr3L 7876186 7876227 4 98 0.0 0.0 0.0 4.0 140 chr3L 7876087 intron CG32365 + chr3L 7876157 intron CG32365 + chr3L 7876227 intron CG32365 + chr3L_4_7875001 chr3L_7875001 RAL-502 1446 chr3L 7903047 7903084 chr3L 7903149 7903185 7 102 1.0 4.5 2.8 1.8 138 chr3L 7903047 intron pbl - chr3L 7903116 intron pbl - chr3L 7903185 intron pbl - chr3L_7_7900001 chr3L_7900001 RAL-502 1447 chr3L 7916816 7916859 chr3L 7926007 7926050 roo 8 9189 4.5 2.0 3.2 1.9 9234 chr3L 7916816 3` UTR syd - chr3L 7921433 intron syd - chr3L 7926050 3` UTR syd - chr3L_8_7920001 chr3L_7920001 RAL-502 1448 chr3L 7985369 7985393 chr3L 7987703 7987741 NOF 11 2344 4.5 6.5 5.5 1.7 2372 chr3L 7985369 intron nmo + chr3L 7986555 intron nmo + chr3L 7987741 intron nmo + chr3L_11_7985001 chr3L_7985001 RAL-502 1449 chr3L 7995946 7995953 chr3L 7996074 7996081 5 128 15.5 0.0 7.8 0.6 135 chr3L 7995946 intron nmo + chr3L 7996014 intron nmo + chr3L 7996081 intron nmo + chr3L_5_7995001 chr3L_7995001 RAL-502 1450 chr3L 7993035 7993055 chr3L 7999491 7999547 9 6467 18.0 27.5 22.8 0.4 6512 chr3L 7993035 intron nmo + chr3L 7996291 intron nmo + chr3L 7999547 intron nmo + chr3L_9_7995001 chr3L_7995001 RAL-502 1451 chr3L 8019703 8019725 chr3L 8024116 8024156 NOF 6 4428 4.0 0.5 2.2 1.9 4453 chr3L 8019703 intron nmo + chr3L 8021930 intron nmo + chr3L 8024156 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-502 1452 chr3L 8051297 8051306 chr3L 8051394 8051403 4 96 8.0 5.0 6.5 0.5 106 chr3L 8051297 3` UTR nmo + chr3L 8051350 3` UTR nmo + chr3L 8051403 3` UTR nmo + chr3L_4_8050001 chr3L_8050001 RAL-502 1453 chr3L 8051309 8051344 chr3L 8051393 8051441 5 94 3.0 5.0 4.0 1.0 132 chr3L 8051309 3` UTR nmo + chr3L 8051375 3` UTR nmo + chr3L 8051441 3` UTR nmo + chr3L_5_8050001 chr3L_8050001 RAL-502 1454 chr3L 8060024 8060070 chr3L 8060143 8060188 6 116 0.5 4.0 2.2 1.9 164 chr3L 8060024 intergenic not near genes chr3L 8060106 intergenic not near genes chr3L 8060188 intergenic not near genes chr3L_6_8060001 chr3L_8060001 RAL-502 1455 chr3L 8062839 8062970 chr3L 8062935 8063089 16 126 1.0 1.0 1.0 8.0 250 chr3L 8062839 intergenic not near genes chr3L 8062964 intergenic not near genes chr3L 8063089 intergenic not near genes chr3L_16_8060001 chr3L_8060001 RAL-502 1456 chr3L 8295775 8295793 chr3L 8295953 8295971 4 178 10.0 9.5 9.8 0.4 196 chr3L 8295775 intergenic CG7201 - chr3L 8295873 intergenic not near genes chr3L 8295971 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-502 1457 chr3L 8295796 8295826 chr3L 8295952 8296002 13 176 3.5 9.5 6.5 1.7 206 chr3L 8295796 intergenic CG7201 - chr3L 8295899 intergenic not near genes chr3L 8296002 intergenic not near genes chr3L_13_8295001 chr3L_8295001 RAL-502 1458 chr3L 8364501 8364535 chr3L 8364612 8364645 11 111 6.5 0.0 3.2 2.6 144 chr3L 8364501 intergenic not near genes chr3L 8364573 intergenic not near genes chr3L 8364645 intergenic not near genes chr3L_11_8360001 chr3L_8360001 RAL-502 1459 chr3L 8395821 8395857 chr3L 8395936 8395942 7 105 5.0 5.0 5.0 1.2 121 chr3L 8395821 intergenic CG7120 + chr3L 8395882 intergenic CG7120 + chr3L 8395942 intergenic CG7120 + chr3L_7_8395001 chr3L_8395001 RAL-502 1460 chr3L 8413819 8413871 chr3L 8413918 8413970 4 99 5.5 0.5 3.0 1.0 151 chr3L 8413819 intron,3` UTR Exo70 +,mtrm + chr3L 8413894 intron,3` UTR Exo70 +,mtrm + chr3L 8413970 intron,3` UTR Exo70 +,mtrm + chr3L_4_8410001 chr3L_8410001 RAL-502 1461 chr3L 8443589 8443599 chr3L 8443685 8443695 6 96 0.5 1.0 0.8 3.3 106 chr3L 8443589 3` UTR CG6983 - chr3L 8443642 3` UTR CG6983 - chr3L 8443695 3` UTR CG6983 - chr3L_6_8440001 chr3L_8440001 RAL-502 1462 chr3L 8481793 8481801 chr3L 8490955 8490980 roo 4 9174 2.5 5.5 4.0 0.8 9187 chr3L 8481793 intron CG43163 - chr3L 8486386 intron CG43163 - chr3L 8490980 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-502 1463 chr3L 8498286 8498328 chr3L 8505772 8505810 blood 11 7483 3.5 7.5 5.5 1.7 7524 chr3L 8498286 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505810 intron CG43163 - chr3L_11_8500001 chr3L_8500001 RAL-502 1464 chr3L 8579848 8579882 chr3L 8579928 8579978 9 78 8.0 3.0 5.5 1.4 130 chr3L 8579848 intron CG43078 + chr3L 8579913 intron CG43078 + chr3L 8579978 intron CG43078 + chr3L_9_8575001 chr3L_8575001 RAL-502 1465 chr3L 8643555 8643607 chr3L 8643651 8643703 17 95 3.0 2.5 2.8 4.5 148 chr3L 8643555 3` UTR Cpr66D + chr3L 8643629 intergenic Cpr66D + chr3L 8643703 intergenic Cpr66D + chr3L_17_8640001 chr3L_8640001 RAL-502 1466 chr3L 8721199 8721214 chr3L 8721320 8721335 12 121 9.0 0.5 4.8 2.1 136 chr3L 8721199 5` UTR CG32022 - chr3L 8721267 5` UTR CG32022 - chr3L 8721335 5` UTR CG6511 + chr3L_12_8720001 chr3L_8720001 RAL-502 1467 chr3L 8752397 8752419 chr3L 8752605 8752627 12 207 4.5 7.5 6.0 1.7 230 chr3L 8752397 intergenic not near genes chr3L 8752512 intergenic not near genes chr3L 8752627 intergenic not near genes chr3L_12_8750001 chr3L_8750001 RAL-502 1468 chr3L 8928249 8928293 chr3L 8928344 8928389 5 95 6.5 2.5 4.5 0.9 140 chr3L 8928249 intron Tsp66E + chr3L 8928319 intron Tsp66E + chr3L 8928389 intron Tsp66E + chr3L_5_8925001 chr3L_8925001 RAL-502 1469 chr3L 8950530 8950570 chr3L 8950644 8950681 13 113 8.0 6.0 7.0 1.6 151 chr3L 8950530 intron,intron CG43783 -,orb2 - chr3L 8950606 intron,intron CG43783 -,orb2 - chr3L 8950681 intron,intron CG43783 -,orb2 - chr3L_13_8950001 chr3L_8950001 RAL-502 1470 chr3L 8959378 8959387 chr3L 8959559 8959568 4 181 7.0 0.5 3.8 0.8 190 chr3L 8959378 intron CG13313 + chr3L 8959473 intron CG13313 + chr3L 8959568 intron CG13313 + chr3L_4_8955001 chr3L_8955001 RAL-502 1471 chr3L 9047065 9047081 chr3L 9047171 9047187 6 106 1.0 0.0 0.5 4.0 122 chr3L 9047065 intergenic CG5144 + chr3L 9047126 intergenic CG5144 + chr3L 9047187 intergenic CG5144 + chr3L_6_9045001 chr3L_9045001 RAL-502 1472 chr3L 9076911 9076951 chr3L 9084491 9084531 412 12 7578 6.5 8.5 7.5 1.4 7620 chr3L 9076911 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084531 exon Tequila + chr3L_12_9080001 chr3L_9080001 RAL-502 1473 chr3L 9111130 9111175 chr3L 9111226 9111271 8 95 3.0 4.0 3.5 1.8 141 chr3L 9111130 intron bol - chr3L 9111200 intron bol - chr3L 9111271 intron bol - chr3L_8_9110001 chr3L_9110001 RAL-502 1474 chr3L 9118335 9118343 chr3L 9118433 9118437 4 96 9.0 11.5 10.2 0.4 102 chr3L 9118335 intron bol - chr3L 9118386 intron bol - chr3L 9118437 intron bol - chr3L_4_9115001 chr3L_9115001 RAL-502 1475 chr3L 9130539 9130574 chr3L 9134320 9134355 412 7 3780 4.5 6.5 5.5 1.1 3816 chr3L 9130539 intergenic bol - chr3L 9132447 intergenic not near genes chr3L 9134355 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-502 1476 chr3L 9164679 9164694 chr3L 9166166 9166181 hobo 6 1487 5.0 0.0 2.5 1.7 1502 chr3L 9164679 intron Rdl - chr3L 9165430 intron Rdl - chr3L 9166181 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-502 1477 chr3L 9164695 9164712 chr3L 9166165 9166199 hobo 13 1483 3.0 0.0 1.5 5.2 1504 chr3L 9164695 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166199 intron Rdl - chr3L_13_9165001 chr3L_9165001 RAL-502 1478 chr3L 9201203 9201243 chr3L 9204994 9205005 5 3773 33.5 27.0 30.2 0.2 3802 chr3L 9201203 intergenic not near genes chr3L 9203104 3` UTR Slc45-1 - chr3L 9205005 exon Slc45-1 - chr3L_5_9200001 chr3L_9200001 RAL-502 1479 chr3L 9219225 9219245 chr3L 9219916 9219932 jockey 5 688 7.0 4.5 5.8 0.7 707 chr3L 9219225 intergenic not near genes chr3L 9219578 intergenic not near genes chr3L 9219932 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-502 1480 chr3L 9219249 9219276 chr3L 9219914 9219936 jockey 10 672 3.0 4.0 3.5 2.2 687 chr3L 9219249 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219936 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-502 1481 chr3L 9220190 9220234 chr3L 9220293 9220337 12 103 3.5 2.5 3.0 3.0 147 chr3L 9220190 intergenic not near genes chr3L 9220264 intergenic not near genes chr3L 9220337 intergenic not near genes chr3L_12_9220001 chr3L_9220001 RAL-502 1482 chr3L 9232861 9232873 chr3L 9232935 9232969 4 86 1.0 6.0 3.5 0.9 108 chr3L 9232861 intergenic not near genes chr3L 9232915 intergenic not near genes chr3L 9232969 intergenic not near genes chr3L_4_9230001 chr3L_9230001 RAL-502 1483 chr3L 9234508 9234558 chr3L 9234739 9234754 11 223 3.0 2.0 2.5 3.1 246 chr3L 9234508 intergenic not near genes chr3L 9234631 intergenic not near genes chr3L 9234754 intergenic CG4483 - chr3L_11_9230001 chr3L_9230001 RAL-502 1484 chr3L 9270599 9270647 chr3L 9278374 9278422 roo 8 7767 3.5 3.0 3.2 1.9 7823 chr3L 9270599 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278422 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-502 1485 chr3L 9302456 9302466 chr3L 9302561 9302569 4 104 5.0 0.0 2.5 1.1 113 chr3L 9302456 intergenic not near genes chr3L 9302512 intergenic not near genes chr3L 9302569 intergenic not near genes chr3L_4_9300001 chr3L_9300001 RAL-502 1486 chr3L 9312713 9312730 chr3L 9312804 9312825 5 94 5.0 2.0 3.5 1.1 112 chr3L 9312713 intergenic not near genes chr3L 9312769 intergenic not near genes chr3L 9312825 intergenic not near genes chr3L_5_9310001 chr3L_9310001 RAL-502 1487 chr3L 9316575 9316626 chr3L 9316760 9316807 13 184 4.0 3.5 3.8 2.7 232 chr3L 9316575 intergenic not near genes chr3L 9316691 intergenic not near genes chr3L 9316807 intergenic not near genes chr3L_13_9315001 chr3L_9315001 RAL-502 1488 chr3L 9321010 9321022 chr3L 9321112 9321125 6 102 9.0 3.0 6.0 0.9 115 chr3L 9321010 intergenic not near genes chr3L 9321068 intergenic not near genes chr3L 9321125 intergenic not near genes chr3L_6_9320001 chr3L_9320001 RAL-502 1489 chr3L 9321030 9321059 chr3L 9321110 9321161 12 97 1.5 2.5 2.0 4.0 131 chr3L 9321030 intergenic not near genes chr3L 9321096 intergenic not near genes chr3L 9321161 intergenic not near genes chr3L_12_9320001 chr3L_9320001 RAL-502 1490 chr3L 9492398 9492412 chr3L 9492499 9492513 8 101 5.5 1.0 3.2 1.9 115 chr3L 9492398 intergenic CG32037 - chr3L 9492456 intergenic CG32037 - chr3L 9492513 intergenic CG32037 - chr3L_8_9490001 chr3L_9490001 RAL-502 1491 chr3L 9498183 9498231 chr3L 9498280 9498328 8 96 1.0 1.5 1.2 3.6 145 chr3L 9498183 intron path - chr3L 9498256 intron path - chr3L 9498328 intron path - chr3L_8_9495001 chr3L_9495001 RAL-502 1492 chr3L 9501690 9501722 chr3L 9502194 9502226 roo 8 505 3.0 5.0 4.0 1.6 536 chr3L 9501690 intron path - chr3L 9501958 intron path - chr3L 9502226 intron path - chr3L_8_9500001 chr3L_9500001 RAL-502 1493 chr3L 9524013 9524052 chr3L 9524112 9524146 9 94 8.0 5.0 6.5 1.2 133 chr3L 9524013 intron CG33700 - chr3L 9524080 intron CG33700 - chr3L 9524146 intron CG33700 - chr3L_9_9520001 chr3L_9520001 RAL-502 1494 chr3L 9571902 9571912 chr3L 9572264 9572279 jockey 4 366 6.5 5.0 5.8 0.6 377 chr3L 9571902 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572279 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-502 1495 chr3L 9575893 9575935 chr3L 9580991 9581032 jockey 8 5096 3.0 5.5 4.2 1.5 5139 chr3L 9575893 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581032 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-502 1496 chr3L 9648866 9648899 chr3L 9648962 9649003 6 107 3.5 0.0 1.8 2.1 137 chr3L 9648866 intron,intron fry -,CG33696 + chr3L 9648934 intron,intron fry -,CG33696 + chr3L 9649003 intron,intron fry -,CG33696 + chr3L_6_9645001 chr3L_9645001 RAL-502 1497 chr3L 9715584 9715600 chr3L 9715673 9715695 5 94 6.0 3.0 4.5 0.9 111 chr3L 9715584 intron vsg + chr3L 9715640 intron vsg + chr3L 9715695 intron vsg + chr3L_5_9715001 chr3L_9715001 RAL-502 1498 chr3L 9775349 9775398 chr3L 9775728 9775778 10 379 0.0 2.0 1.0 5.0 429 chr3L 9775349 intron CG8177 + chr3L 9775564 intron CG8177 + chr3L 9775778 intron CG8177 + chr3L_10_9775001 chr3L_9775001 RAL-502 1499 chr3L 9824147 9824166 chr3L 9824246 9824265 8 99 4.5 0.0 2.2 2.5 118 chr3L 9824147 intron CG43897 + chr3L 9824206 intron CG43897 + chr3L 9824265 intron CG43897 + chr3L_8_9820001 chr3L_9820001 RAL-502 1500 chr3L 9917863 9917901 chr3L 9917957 9918003 9 91 4.5 4.5 4.5 1.6 140 chr3L 9917863 intron CG34356 + chr3L 9917933 intron CG34356 + chr3L 9918003 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-502 1501 chr3L 9918859 9918913 chr3L 9918974 9919027 21 107 6.0 1.5 3.8 4.4 168 chr3L 9918859 intron CG34356 + chr3L 9918943 intron CG34356 + chr3L 9919027 intron CG34356 + chr3L_21_9915001 chr3L_9915001 RAL-502 1502 chr3L 9929660 9929690 chr3L 9938458 9938490 roo 9 8800 6.0 5.5 5.8 1.3 8830 chr3L 9929660 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938490 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-502 1503 chr3L 9940128 9940162 chr3L 9940226 9940260 7 97 4.0 9.5 6.8 0.9 132 chr3L 9940128 intron CG34356 + chr3L 9940194 intron CG34356 + chr3L 9940260 intron CG34356 + chr3L_7_9940001 chr3L_9940001 RAL-502 1504 chr3L 10049522 10049573 chr3L 10049621 10049659 6 92 7.0 3.5 5.2 1.0 137 chr3L 10049522 intron dpr6 + chr3L 10049590 intron dpr6 + chr3L 10049659 intron dpr6 + chr3L_6_10045001 chr3L_10045001 RAL-502 1505 chr3L 10060109 10060117 chr3L 10067708 10067716 17.6 4 7599 6.0 3.0 4.5 0.7 7607 chr3L 10060109 intron dpr6 + chr3L 10063912 intron dpr6 + chr3L 10067716 intron dpr6 + chr3L_4_10060001 chr3L_10060001 RAL-502 1506 chr3L 10161427 10161460 chr3L 10161518 10161544 12 89 0.0 3.0 1.5 4.8 117 chr3L 10161427 intron dpr10 - chr3L 10161486 intron dpr10 - chr3L 10161544 intron dpr10 - chr3L_12_10160001 chr3L_10160001 RAL-502 1507 chr3L 10165645 10165653 chr3L 10165741 10165749 4 96 7.5 0.0 3.8 0.8 104 chr3L 10165645 intron dpr10 - chr3L 10165697 intron dpr10 - chr3L 10165749 intron dpr10 - chr3L_4_10165001 chr3L_10165001 RAL-502 1508 chr3L 10214711 10214820 chr3L 10214818 10214935 10 117 0.0 0.0 0.0 10.0 224 chr3L 10214711 intergenic not near genes chr3L 10214823 intergenic not near genes chr3L 10214935 intergenic not near genes chr3L_10_10210001 chr3L_10210001 RAL-502 1509 chr3L 10255369 10255409 chr3L 10255487 10255526 4 118 0.0 2.0 1.0 2.0 157 chr3L 10255369 intergenic not near genes chr3L 10255448 intergenic not near genes chr3L 10255526 intergenic not near genes chr3L_4_10255001 chr3L_10255001 RAL-502 1510 chr3L 10298657 10298700 chr3L 10298762 10298807 9 107 2.0 2.5 2.2 2.8 150 chr3L 10298657 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298807 intergenic not near genes chr3L_9_10295001 chr3L_10295001 RAL-502 1511 chr3L 10299683 10299720 chr3L 10299781 10299821 14 101 6.0 3.5 4.8 2.4 138 chr3L 10299683 intergenic not near genes chr3L 10299752 intergenic not near genes chr3L 10299821 intergenic not near genes chr3L_14_10295001 chr3L_10295001 RAL-502 1512 chr3L 10308717 10308766 chr3L 10308814 10308863 15 94 4.0 4.0 4.0 3.0 146 chr3L 10308717 intergenic not near genes chr3L 10308790 intergenic not near genes chr3L 10308863 intergenic not near genes chr3L_15_10305001 chr3L_10305001 RAL-502 1513 chr3L 10314111 10314130 chr3L 10314217 10314236 7 103 8.5 5.0 6.8 0.9 125 chr3L 10314111 intergenic not near genes chr3L 10314174 intergenic not near genes chr3L 10314236 intergenic not near genes chr3L_7_10310001 chr3L_10310001 RAL-502 1514 chr3L 10314131 10314155 chr3L 10314212 10314247 4 94 5.0 5.0 5.0 0.7 116 chr3L 10314131 intergenic not near genes chr3L 10314189 intergenic not near genes chr3L 10314247 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-502 1515 chr3L 10386369 10386417 chr3L 10386466 10386514 19 94 3.0 3.5 3.2 4.5 145 chr3L 10386369 intergenic CR45245 + chr3L 10386442 intergenic CR45245 + chr3L 10386514 5` UTR CR45245 + chr3L_19_10385001 chr3L_10385001 RAL-502 1516 chr3L 10386920 10386939 chr3L 10387017 10387036 6 95 13.0 9.5 11.2 0.5 116 chr3L 10386920 5` UTR CR45245 + chr3L 10386978 5` UTR CR45245 + chr3L 10387036 5` UTR CR45245 + chr3L_6_10385001 chr3L_10385001 RAL-502 1517 chr3L 10414943 10414954 chr3L 10417333 10417346 Doc 4 2390 1.5 8.5 5.0 0.7 2403 chr3L 10414943 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-502 1518 chr3L 10414955 10414970 chr3L 10417331 10417362 Doc 10 2388 1.5 8.5 5.0 1.7 2407 chr3L 10414955 intergenic CG12362 + chr3L 10416158 intergenic not near genes chr3L 10417362 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-502 1519 chr3L 10417580 10417603 chr3L 10417646 10417676 7 78 6.5 3.5 5.0 1.2 96 chr3L 10417580 intergenic not near genes chr3L 10417628 intergenic not near genes chr3L 10417676 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-502 1520 chr3L 10469923 10469964 chr3L 10470019 10470060 12 96 5.0 0.5 2.8 3.2 137 chr3L 10469923 intergenic not near genes chr3L 10469992 intergenic not near genes chr3L 10470060 intergenic not near genes chr3L_12_10465001 chr3L_10465001 RAL-502 1521 chr3L 10514306 10514332 chr3L 10514395 10514432 9 99 0.5 1.5 1.0 4.5 126 chr3L 10514306 intron A2bp1 + chr3L 10514369 intron A2bp1 + chr3L 10514432 intron A2bp1 + chr3L_9_10510001 chr3L_10510001 RAL-502 1522 chr3L 10621841 10621877 chr3L 10621948 10621984 4 102 1.5 3.5 2.5 1.1 143 chr3L 10621841 intergenic not near genes chr3L 10621912 intergenic not near genes chr3L 10621984 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-502 1523 chr3L 10628463 10628507 chr3L 10628561 10628605 18 101 8.0 3.0 5.5 2.8 142 chr3L 10628463 5` UTR CG14151 - chr3L 10628534 intergenic CG14151 - chr3L 10628605 intergenic CG14151 -,CG42536 - chr3L_18_10625001 chr3L_10625001 RAL-502 1524 chr3L 10658064 10658195 chr3L 10658158 10658342 22 123 0.0 0.0 0.0 22.0 278 chr3L 10658064 intron CG32066 - chr3L 10658203 intron CG32066 - chr3L 10658342 intron CG32066 - chr3L_22_10655001 chr3L_10655001 RAL-502 1525 chr3L 10747078 10747123 chr3L 10747174 10747220 10 97 2.0 2.0 2.0 3.3 142 chr3L 10747078 intergenic not near genes chr3L 10747149 intergenic not near genes chr3L 10747220 intergenic not near genes chr3L_10_10745001 chr3L_10745001 RAL-502 1526 chr3L 10762827 10762857 chr3L 10762914 10762961 5 93 6.0 3.0 4.5 0.9 134 chr3L 10762827 intergenic not near genes chr3L 10762894 intergenic not near genes chr3L 10762961 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-502 1527 chr3L 10795054 10795071 chr3L 10795154 10795171 6 99 3.5 0.0 1.8 2.1 117 chr3L 10795054 5` UTR CR44546 + chr3L 10795112 5` UTR CR44546 + chr3L 10795171 5` UTR CR44546 + chr3L_6_10795001 chr3L_10795001 RAL-502 1528 chr3L 10796592 10796635 chr3L 10796746 10796764 6 147 3.5 3.5 3.5 1.3 172 chr3L 10796592 intergenic not near genes chr3L 10796678 intergenic not near genes chr3L 10796764 intergenic not near genes chr3L_6_10795001 chr3L_10795001 RAL-502 1529 chr3L 10904280 10904324 chr3L 10904391 10904434 13 112 1.0 1.0 1.0 6.5 154 chr3L 10904280 intergenic not near genes chr3L 10904357 intergenic not near genes chr3L 10904434 intergenic not near genes chr3L_13_10900001 chr3L_10900001 RAL-502 1530 chr3L 11031423 11031437 chr3L 11031509 11031540 4 98 3.5 2.5 3.0 1.0 117 chr3L 11031423 intergenic not near genes chr3L 11031482 intergenic not near genes chr3L 11031540 intergenic not near genes chr3L_4_11030001 chr3L_11030001 RAL-502 1531 chr3L 11033426 11033449 chr3L 11033598 11033607 6 171 2.5 1.0 1.8 2.1 181 chr3L 11033426 intergenic not near genes chr3L 11033516 intergenic not near genes chr3L 11033607 intergenic not near genes chr3L_6_11030001 chr3L_11030001 RAL-502 1532 chr3L 11052318 11052362 chr3L 11052416 11052452 9 96 3.0 5.5 4.2 1.7 134 chr3L 11052318 intergenic not near genes chr3L 11052385 intergenic not near genes chr3L 11052452 intergenic not near genes chr3L_9_11050001 chr3L_11050001 RAL-502 1533 chr3L 11087051 11087088 chr3L 11088859 11088897 S-element 8 1806 3.0 5.5 4.2 1.5 1846 chr3L 11087051 intron JIL-1 - chr3L 11087974 intron JIL-1 - chr3L 11088897 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-502 1534 chr3L 11105286 11105325 chr3L 11107011 11107051 X-element 4 1727 2.0 4.0 3.0 1.0 1765 chr3L 11105286 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107051 exon CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-502 1535 chr3L 11135508 11135529 chr3L 11135758 11135778 7 250 2.0 1.0 1.5 2.8 270 chr3L 11135508 intergenic CG14143 + chr3L 11135643 intergenic CG14143 +,CG32082 + chr3L 11135778 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-502 1536 chr3L 11186260 11186298 chr3L 11186350 11186392 5 95 4.0 0.0 2.0 1.7 132 chr3L 11186260 intron GlcAT-P - chr3L 11186326 intron GlcAT-P - chr3L 11186392 intron GlcAT-P - chr3L_5_11185001 chr3L_11185001 RAL-502 1537 chr3L 11241780 11241790 chr3L 11241882 11241892 4 102 0.0 5.5 2.8 1.1 112 chr3L 11241780 intergenic not near genes chr3L 11241836 intergenic not near genes chr3L 11241892 intergenic not near genes chr3L_4_11240001 chr3L_11240001 RAL-502 1538 chr3L 11264451 11264493 chr3L 11271417 11271465 17.6 11 6971 4.0 3.5 3.8 2.3 7014 chr3L 11264451 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271465 intergenic not near genes chr3L_11_11265001 chr3L_11265001 RAL-502 1539 chr3L 11290609 11290657 chr3L 11290951 11291000 12 341 2.0 5.0 3.5 2.7 391 chr3L 11290609 intron CG6175 - chr3L 11290804 intron CG6175 - chr3L 11291000 intron CG6175 - chr3L_12_11290001 chr3L_11290001 RAL-502 1540 chr3L 11329670 11329728 chr3L 11332895 11332919 jockey 18 3214 7.0 5.5 6.2 2.5 3249 chr3L 11329670 intergenic not near genes chr3L 11331294 intergenic not near genes chr3L 11332919 intergenic not near genes chr3L_18_11330001 chr3L_11330001 RAL-502 1541 chr3L 11381565 11381586 chr3L 11381776 11381800 8 214 1.5 4.5 3.0 2.0 235 chr3L 11381565 intergenic not near genes chr3L 11381682 intergenic not near genes chr3L 11381800 intergenic not near genes chr3L_8_11380001 chr3L_11380001 RAL-502 1542 chr3L 11383949 11383987 chr3L 11384048 11384059 5 93 5.0 6.0 5.5 0.8 110 chr3L 11383949 intron CR42755 - chr3L 11384004 3` UTR CR42755 - chr3L 11384059 3` UTR CR42755 - chr3L_5_11380001 chr3L_11380001 RAL-502 1543 chr3L 11428200 11428222 chr3L 11428531 11428553 17 329 0.0 7.5 3.8 3.5 353 chr3L 11428200 intergenic not near genes chr3L 11428376 intergenic not near genes chr3L 11428553 intergenic not near genes chr3L_17_11425001 chr3L_11425001 RAL-502 1544 chr3L 11534990 11535013 chr3L 11535094 11535115 6 104 8.5 0.5 4.5 1.1 125 chr3L 11534990 intron Mob2 - chr3L 11535052 intron Mob2 - chr3L 11535115 intron Mob2 - chr3L_6_11535001 chr3L_11535001 RAL-502 1545 chr3L 11541181 11541225 chr3L 11541287 11541319 15 104 4.0 1.0 2.5 4.3 138 chr3L 11541181 intron Mob2 - chr3L 11541250 intron Mob2 - chr3L 11541319 intron Mob2 - chr3L_15_11540001 chr3L_11540001 RAL-502 1546 chr3L 11579547 11579585 chr3L 11579664 11579711 13 122 2.0 5.0 3.5 2.9 164 chr3L 11579547 intergenic CG43390 - chr3L 11579629 intergenic CG43390 - chr3L 11579711 intergenic CG43390 - chr3L_13_11575001 chr3L_11575001 RAL-502 1547 chr3L 11587905 11587947 chr3L 11588001 11588041 4 96 3.0 6.0 4.5 0.7 136 chr3L 11587905 intergenic rt - chr3L 11587973 intergenic rt - chr3L 11588041 intergenic rt - chr3L_4_11585001 chr3L_11585001 RAL-502 1548 chr3L 11588712 11588758 chr3L 11588887 11588934 21 173 1.5 6.0 3.8 4.4 222 chr3L 11588712 intergenic not near genes chr3L 11588823 intergenic not near genes chr3L 11588934 intergenic not near genes chr3L_21_11585001 chr3L_11585001 RAL-502 1549 chr3L 11656242 11656275 chr3L 11656340 11656378 8 97 1.5 0.0 0.8 4.4 136 chr3L 11656242 intron CG32085 - chr3L 11656310 intron CG32085 - chr3L 11656378 intron CG32085 - chr3L_8_11655001 chr3L_11655001 RAL-502 1550 chr3L 11723066 11723110 chr3L 11727873 11727925 Doc 19 4813 10.0 3.5 6.8 2.4 4859 chr3L 11723066 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727925 3` UTR Bmcp + chr3L_19_11725001 chr3L_11725001 RAL-502 1551 chr3L 11742942 11742973 chr3L 11743045 11743056 9 92 10.5 1.0 5.8 1.3 114 chr3L 11742942 intron CG6024 - chr3L 11742999 intron CG6024 - chr3L 11743056 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-502 1552 chr3L 11743377 11743422 chr3L 11743537 11743583 7 160 1.5 2.5 2.0 2.3 206 chr3L 11743377 intron CG6024 - chr3L 11743480 intron CG6024 - chr3L 11743583 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-502 1553 chr3L 11743992 11744020 chr3L 11744120 11744148 13 126 6.0 0.0 3.0 3.2 156 chr3L 11743992 exon CG6024 - chr3L 11744070 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_13_11740001 chr3L_11740001 RAL-502 1554 chr3L 11755174 11755182 chr3L 11755266 11755281 7 94 7.0 2.0 4.5 1.3 107 chr3L 11755174 intron CG6024 - chr3L 11755228 intron CG6024 - chr3L 11755281 intron CG6024 - chr3L_7_11755001 chr3L_11755001 RAL-502 1555 chr3L 11757898 11757914 chr3L 11758015 11758029 5 116 6.0 0.0 3.0 1.2 131 chr3L 11757898 intron CG6024 - chr3L 11757964 intron CG6024 - chr3L 11758029 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-502 1556 chr3L 7749469 7749471 chr3L 11777678 11777678 11 4028207 17.0 9.5 13.2 0.8 4028209 chr3L 7749469 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_11_9760001 chr3L_9760001 RAL-502 1557 chr3L 11777678 11777678 chr3L 12163305 12163305 7 385627 12.5 27.5 20.0 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_7_11970001 chr3L_11970001 RAL-502 1558 chr3L 11796574 11796601 chr3L 11796672 11796706 6 102 7.5 0.0 3.8 1.2 132 chr3L 11796574 exon Klp68D + chr3L 11796640 intron Klp68D + chr3L 11796706 intron Klp68D + chr3L_6_11795001 chr3L_11795001 RAL-502 1559 chr3L 11811442 11811488 chr3L 11811539 11811586 24 96 4.5 5.0 4.8 4.1 144 chr3L 11811442 intron CG42255 - chr3L 11811514 intron CG42255 - chr3L 11811586 exon CG42255 - chr3L_24_11810001 chr3L_11810001 RAL-502 1560 chr3L 11838948 11838985 chr3L 11839047 11839074 5 102 0.0 1.5 0.8 2.8 126 chr3L 11838948 intergenic not near genes chr3L 11839011 intergenic not near genes chr3L 11839074 intergenic not near genes chr3L_5_11835001 chr3L_11835001 RAL-502 1561 chr3L 11849312 11849353 chr3L 11849432 11849473 9 120 8.0 6.0 7.0 1.1 161 chr3L 11849312 intergenic not near genes chr3L 11849392 intergenic not near genes chr3L 11849473 intergenic not near genes chr3L_9_11845001 chr3L_11845001 RAL-502 1562 chr3L 11850123 11850161 chr3L 11850238 11850274 11 112 6.5 0.5 3.5 2.4 151 chr3L 11850123 intergenic not near genes chr3L 11850198 intergenic CG44837 - chr3L 11850274 intergenic CG44837 - chr3L_11_11850001 chr3L_11850001 RAL-502 1563 chr3L 11864537 11864585 chr3L 11865852 11865900 pogo 17 1313 2.0 4.0 3.0 4.2 1363 chr3L 11864537 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865900 intron CG44837 - chr3L_17_11865001 chr3L_11865001 RAL-502 1564 chr3L 11905100 11905143 chr3L 11905202 11905234 11 99 4.5 3.0 3.8 2.3 134 chr3L 11905100 intron CG44837 - chr3L 11905167 intron CG44837 - chr3L 11905234 intron CG44837 - chr3L_11_11905001 chr3L_11905001 RAL-502 1565 chr3L 11943474 11943503 chr3L 11943594 11943624 8 120 3.5 3.0 3.2 1.9 150 chr3L 11943474 3` UTR Rpt4R + chr3L 11943549 intergenic Rpt4R +,CG5883 - chr3L 11943624 intergenic CG5883 -,Rpt4R + chr3L_8_11940001 chr3L_11940001 RAL-502 1566 chr3L 11984546 11984600 chr3L 11984657 11984719 11 104 3.5 0.5 2.0 3.7 173 chr3L 11984546 intergenic CG6938 + chr3L 11984632 intergenic CG6938 + chr3L 11984719 intergenic CG6938 + chr3L_11_11980001 chr3L_11980001 RAL-502 1567 chr3L 12039611 12039658 chr3L 12039719 12039768 18 107 3.5 0.0 1.8 6.4 157 chr3L 12039611 intron rols - chr3L 12039690 intron rols - chr3L 12039768 intron rols - chr3L_18_12035001 chr3L_12035001 RAL-502 1568 chr3L 12052687 12052736 chr3L 12052796 12052839 21 107 3.0 4.5 3.8 4.4 152 chr3L 12052687 intron rols - chr3L 12052763 intron rols - chr3L 12052839 intron rols - chr3L_21_12050001 chr3L_12050001 RAL-502 1569 chr3L 12075408 12075429 chr3L 12075517 12075538 8 108 12.0 0.0 6.0 1.1 130 chr3L 12075408 intron Sema-5c - chr3L 12075473 intron Sema-5c - chr3L 12075538 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-502 1570 chr3L 12089061 12089104 chr3L 12089161 12089204 21 100 5.0 3.5 4.2 4.0 143 chr3L 12089061 exon CG17154 + chr3L 12089132 3` UTR CG17154 + chr3L 12089204 3` UTR CG17154 + chr3L_21_12085001 chr3L_12085001 RAL-502 1571 chr3L 12119738 12119786 chr3L 12119855 12119902 9 116 2.0 1.0 1.5 3.6 164 chr3L 12119738 3` UTR ssp + chr3L 12119820 intergenic ssp +,CG11560 + chr3L 12119902 intergenic ssp +,CG11560 + chr3L_9_12115001 chr3L_12115001 RAL-502 1572 chr3L 12158487 12158523 chr3L 12158727 12158764 9 240 23.5 25.0 24.2 0.4 277 chr3L 12158487 intron CG9760 - chr3L 12158626 intron CG9760 - chr3L 12158764 intron CG9760 - chr3L_9_12155001 chr3L_12155001 RAL-502 1573 chr3L 12158778 12158791 chr3L 12160237 12160248 4 1454 84.5 69.0 76.8 0.1 1470 chr3L 12158778 intron CG9760 - chr3L 12159513 exon CG9760 - chr3L 12160248 intron CG9760 - chr3L_4_12155001 chr3L_12155001 RAL-502 1574 chr3L 12158775 12158805 chr3L 12160249 12160280 15 1465 90.5 64.0 77.2 0.2 1505 chr3L 12158775 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160280 intron CG9760 - chr3L_15_12155001 chr3L_12155001 RAL-502 1575 chr3L 12156433 12156438 chr3L 12160299 12160311 5 3867 25.5 40.5 33.0 0.1 3878 chr3L 12156433 3` UTR Nrx-IV + chr3L 12158372 intron CG9760 - chr3L 12160311 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-502 1576 chr3L 12156429 12156443 chr3L 12160313 12160349 10 3885 25.5 33.0 29.2 0.3 3920 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158389 intron CG9760 - chr3L 12160349 intron CG9760 - chr3L_10_12155001 chr3L_12155001 RAL-502 1577 chr3L 12170771 12170825 chr3L 12170873 12170927 8 102 3.5 0.5 2.0 2.7 156 chr3L 12170771 intron Rh7 - chr3L 12170849 intron Rh7 - chr3L 12170927 intron Rh7 - chr3L_8_12170001 chr3L_12170001 RAL-502 1578 chr3L 12231389 12231424 chr3L 12231668 12231704 11 281 29.5 31.5 30.5 0.3 315 chr3L 12231389 intron app - chr3L 12231546 intron app - chr3L 12231704 intron app - chr3L_11_12230001 chr3L_12230001 RAL-502 1579 chr3L 12290233 12290259 chr3L 12290340 12290369 7 109 11.0 1.5 6.2 1.0 136 chr3L 12290233 intergenic CR45658 - chr3L 12290301 intergenic CR45658 - chr3L 12290369 intergenic CR45658 - chr3L_7_12290001 chr3L_12290001 RAL-502 1580 chr3L 12312484 12312508 chr3L 12312562 12312606 8 93 2.5 5.0 3.8 1.7 122 chr3L 12312484 intergenic not near genes chr3L 12312545 intergenic not near genes chr3L 12312606 intergenic not near genes chr3L_8_12310001 chr3L_12310001 RAL-502 1581 chr3L 12353942 12353950 chr3L 12354014 12354058 4 100 3.0 6.5 4.8 0.7 116 chr3L 12353942 intergenic not near genes chr3L 12354000 intergenic not near genes chr3L 12354058 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-502 1582 chr3L 12381522 12381545 chr3L 12381620 12381642 4 97 0.0 0.5 0.2 3.3 120 chr3L 12381522 intron Ncc69 - chr3L 12381582 intron Ncc69 - chr3L 12381642 intron Ncc69 - chr3L_4_12380001 chr3L_12380001 RAL-502 1583 chr3L 12446255 12446295 chr3L 12446350 12446376 6 92 4.0 4.0 4.0 1.2 121 chr3L 12446255 intergenic not near genes chr3L 12446316 intergenic not near genes chr3L 12446376 intergenic not near genes chr3L_6_12445001 chr3L_12445001 RAL-502 1584 chr3L 12491708 12491710 chr3L 12491786 12491809 4 91 0.0 3.0 1.5 1.6 101 chr3L 12491708 intergenic CG10657 -,CR45682 + chr3L 12491758 intergenic CG10657 -,CR45682 + chr3L 12491809 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-502 1585 chr3L 12516333 12516379 chr3L 12516429 12516436 11 85 0.5 1.5 1.0 5.5 103 chr3L 12516333 intron tral + chr3L 12516384 intron tral + chr3L 12516436 intron tral + chr3L_11_12515001 chr3L_12515001 RAL-502 1586 chr3L 12612565 12612573 chr3L 12612673 12612678 4 110 9.5 5.0 7.2 0.5 113 chr3L 12612565 intron caup + chr3L 12612622 intron caup + chr3L 12612678 intron caup + chr3L_4_12610001 chr3L_12610001 RAL-502 1587 chr3L 12612574 12612612 chr3L 12612669 12612725 16 102 2.5 4.0 3.2 3.8 151 chr3L 12612574 intron caup + chr3L 12612650 intron caup + chr3L 12612725 intron caup + chr3L_16_12610001 chr3L_12610001 RAL-502 1588 chr3L 12614429 12614440 chr3L 12614631 12614642 5 202 8.5 0.0 4.2 1.0 213 chr3L 12614429 intron caup + chr3L 12614536 intron caup + chr3L 12614642 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-502 1589 chr3L 12614441 12614470 chr3L 12614629 12614672 10 198 2.0 0.0 1.0 5.0 231 chr3L 12614441 intron caup + chr3L 12614556 intron caup + chr3L 12614672 intron caup + chr3L_10_12610001 chr3L_12610001 RAL-502 1590 chr3L 12615723 12615773 chr3L 12615818 12615858 6 94 8.0 7.5 7.8 0.7 135 chr3L 12615723 intron caup + chr3L 12615790 intron caup + chr3L 12615858 intron caup + chr3L_6_12615001 chr3L_12615001 RAL-502 1591 chr3L 12626154 12626173 chr3L 12626282 12626301 7 128 2.0 0.0 1.0 3.5 147 chr3L 12626154 intergenic not near genes chr3L 12626228 intergenic not near genes chr3L 12626301 intergenic not near genes chr3L_7_12625001 chr3L_12625001 RAL-502 1592 chr3L 12647930 12647974 chr3L 12648025 12648063 10 93 5.5 0.5 3.0 2.5 133 chr3L 12647930 5` UTR CR32111 + chr3L 12647996 5` UTR CR32111 + chr3L 12648063 5` UTR CR32111 + chr3L_10_12645001 chr3L_12645001 RAL-502 1593 chr3L 12715788 12715833 chr3L 12715912 12715921 8 116 0.0 3.0 1.5 3.2 133 chr3L 12715788 intergenic not near genes chr3L 12715854 intergenic not near genes chr3L 12715921 intergenic not near genes chr3L_8_12715001 chr3L_12715001 RAL-502 1594 chr3L 12799828 12799836 chr3L 12799956 12799964 5 128 5.0 9.5 7.2 0.6 136 chr3L 12799828 intron Atg1 - chr3L 12799896 intron Atg1 - chr3L 12799964 intron Atg1 - chr3L_5_12795001 chr3L_12795001 RAL-502 1595 chr3L 12874917 12874955 chr3L 12877229 12877267 jockey 8 2307 4.0 4.0 4.0 1.6 2350 chr3L 12874917 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877267 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-502 1596 chr3L 12894785 12894812 chr3L 12894882 12894910 10 97 9.0 8.0 8.5 1.1 125 chr3L 12894785 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894910 intergenic CG14118 + chr3L_10_12890001 chr3L_12890001 RAL-502 1597 chr3L 12919265 12919299 chr3L 12924765 12924770 Rt1c 4 5485 8.0 3.0 5.5 0.6 5505 chr3L 12919265 intergenic not near genes chr3L 12922018 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-502 1598 chr3L 12928196 12928236 chr3L 12928343 12928345 16 143 4.0 3.0 3.5 3.6 149 chr3L 12928196 intergenic not near genes chr3L 12928270 intergenic not near genes chr3L 12928345 intergenic not near genes chr3L_16_12925001 chr3L_12925001 RAL-502 1599 chr3L 12957785 12957788 chr3L 12962287 12962290 copia 4 4502 9.0 10.5 9.8 0.4 4505 chr3L 12957785 intergenic not near genes chr3L 12960038 intergenic not near genes chr3L 12962290 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-502 1600 chr3L 12957791 12957820 chr3L 12962279 12962305 copia 11 4496 3.5 9.0 6.2 1.5 4514 chr3L 12957791 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962305 intergenic not near genes chr3L_11_12960001 chr3L_12960001 RAL-502 1601 chr3L 13050550 13050559 chr3L 13050644 13050658 6 97 6.0 4.5 5.2 1.0 108 chr3L 13050550 intergenic not near genes chr3L 13050604 intergenic not near genes chr3L 13050658 intergenic not near genes chr3L_6_13050001 chr3L_13050001 RAL-502 1602 chr3L 13085035 13085083 chr3L 13085134 13085174 16 97 3.5 4.0 3.8 3.3 139 chr3L 13085035 intergenic not near genes chr3L 13085104 intergenic not near genes chr3L 13085174 intergenic not near genes chr3L_16_13085001 chr3L_13085001 RAL-502 1603 chr3L 13122500 13122548 chr3L 13122596 13122639 15 96 5.0 5.5 5.2 2.4 139 chr3L 13122500 intergenic not near genes chr3L 13122570 intergenic not near genes chr3L 13122639 intergenic not near genes chr3L_15_13120001 chr3L_13120001 RAL-502 1604 chr3L 13134497 13134525 chr3L 13134603 13134622 5 104 4.0 0.5 2.2 1.6 125 chr3L 13134497 intergenic not near genes chr3L 13134560 intergenic not near genes chr3L 13134622 intergenic not near genes chr3L_5_13130001 chr3L_13130001 RAL-502 1605 chr3L 13182435 13182474 chr3L 13182533 13182572 4 98 3.5 1.5 2.5 1.1 137 chr3L 13182435 intergenic not near genes chr3L 13182504 intergenic not near genes chr3L 13182572 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-502 1606 chr3L 13194055 13194096 chr3L 13194152 13194195 14 98 5.0 3.0 4.0 2.8 140 chr3L 13194055 intergenic not near genes chr3L 13194125 intergenic not near genes chr3L 13194195 intergenic not near genes chr3L_14_13190001 chr3L_13190001 RAL-502 1607 chr3L 13267271 13267311 chr3L 13267395 13267444 11 129 4.0 0.0 2.0 3.7 173 chr3L 13267271 intron caps + chr3L 13267358 intron caps + chr3L 13267444 intron caps + chr3L_11_13265001 chr3L_13265001 RAL-502 1608 chr3L 13289146 13289183 chr3L 13289481 13289518 7 328 5.0 5.0 5.0 1.2 372 chr3L 13289146 intergenic not near genes chr3L 13289332 intergenic not near genes chr3L 13289518 intergenic not near genes chr3L_7_13285001 chr3L_13285001 RAL-502 1609 chr3L 13315838 13315865 chr3L 13315943 13315972 6 106 5.5 4.0 4.8 1.0 134 chr3L 13315838 intergenic not near genes chr3L 13315905 intergenic not near genes chr3L 13315972 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-502 1610 chr3L 13338283 13338304 chr3L 13338434 13338458 10 152 4.5 5.0 4.8 1.7 175 chr3L 13338283 intergenic not near genes chr3L 13338370 intergenic not near genes chr3L 13338458 intergenic not near genes chr3L_10_13335001 chr3L_13335001 RAL-502 1611 chr3L 13338307 13338318 chr3L 13338433 13338472 5 148 3.5 5.0 4.2 1.0 165 chr3L 13338307 intergenic not near genes chr3L 13338390 intergenic not near genes chr3L 13338472 intergenic not near genes chr3L_5_13335001 chr3L_13335001 RAL-502 1612 chr3L 13361759 13361806 chr3L 13361864 13361903 12 98 1.5 2.5 2.0 4.0 144 chr3L 13361759 intergenic not near genes chr3L 13361831 intergenic not near genes chr3L 13361903 intergenic not near genes chr3L_12_13360001 chr3L_13360001 RAL-502 1613 chr3L 13406267 13406295 chr3L 13406356 13406358 7 79 7.0 3.0 5.0 1.2 91 chr3L 13406267 intergenic not near genes chr3L 13406312 intergenic not near genes chr3L 13406358 intergenic not near genes chr3L_7_13405001 chr3L_13405001 RAL-502 1614 chr3L 13452649 13452673 chr3L 13452757 13452781 7 107 0.5 3.5 2.0 2.3 132 chr3L 13452649 intron CG10738 + chr3L 13452715 intron CG10738 + chr3L 13452781 intron CG10738 + chr3L_7_13450001 chr3L_13450001 RAL-502 1615 chr3L 13525144 13525153 chr3L 13532960 13532968 roo 5 7814 13.0 8.5 10.8 0.4 7824 chr3L 13525144 intergenic not near genes chr3L 13529056 intergenic not near genes chr3L 13532968 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-502 1616 chr3L 13525159 13525172 chr3L 13532958 13532983 roo 7 7812 10.0 8.0 9.0 0.7 7824 chr3L 13525159 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-502 1617 chr3L 13525174 13525190 chr3L 13532951 13532995 roo 7 7798 7.0 6.5 6.8 0.9 7821 chr3L 13525174 intergenic not near genes chr3L 13529084 intergenic not near genes chr3L 13532995 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-502 1618 chr3L 13535893 13535935 chr3L 13535984 13536031 6 92 3.5 2.5 3.0 1.5 138 chr3L 13535893 intergenic not near genes chr3L 13535962 intergenic not near genes chr3L 13536031 intergenic not near genes chr3L_6_13535001 chr3L_13535001 RAL-502 1619 chr3L 13605332 13605367 chr3L 13605411 13605449 11 87 1.0 4.5 2.8 2.9 117 chr3L 13605332 intron bru-3 - chr3L 13605390 intron bru-3 - chr3L 13605449 intron bru-3 - chr3L_11_13605001 chr3L_13605001 RAL-502 1620 chr3L 13620961 13621004 chr3L 13621118 13621162 18 155 2.5 10.5 6.5 2.4 201 chr3L 13620961 intron bru-3 - chr3L 13621062 intron bru-3 - chr3L 13621162 intron bru-3 - chr3L_18_13620001 chr3L_13620001 RAL-502 1621 chr3L 13654055 13654099 chr3L 13654152 13654198 17 97 1.0 0.0 0.5 11.3 143 chr3L 13654055 intron bru-3 - chr3L 13654126 intron bru-3 - chr3L 13654198 intron bru-3 - chr3L_17_13650001 chr3L_13650001 RAL-502 1622 chr3L 13740014 13740046 chr3L 13740126 13740157 12 109 3.5 6.0 4.8 2.1 143 chr3L 13740014 intron bru-3 - chr3L 13740086 intron bru-3 - chr3L 13740157 intron bru-3 - chr3L_12_13740001 chr3L_13740001 RAL-502 1623 chr3L 13804525 13804571 chr3L 13822831 13822877 roo 19 18305 6.0 7.0 6.5 2.5 18352 chr3L 13804525 intergenic not near genes chr3L 13813701 intergenic not near genes chr3L 13822877 intergenic not near genes chr3L_19_13810001 chr3L_13810001 RAL-502 1624 chr3L 13838914 13838959 chr3L 13839153 13839190 9 235 3.0 3.0 3.0 2.2 276 chr3L 13838914 intergenic not near genes chr3L 13839052 intergenic not near genes chr3L 13839190 intergenic not near genes chr3L_9_13835001 chr3L_13835001 RAL-502 1625 chr3L 13884365 13884385 chr3L 13884473 13884477 5 106 0.5 2.0 1.2 2.3 112 chr3L 13884365 intron dysc - chr3L 13884421 intron dysc - chr3L 13884477 intron dysc - chr3L_5_13880001 chr3L_13880001 RAL-502 1626 chr3L 13920409 13920433 chr3L 13920509 13920533 7 100 0.0 6.5 3.2 1.7 124 chr3L 13920409 intron Rgl - chr3L 13920471 intron Rgl - chr3L 13920533 intron Rgl - chr3L_7_13920001 chr3L_13920001 RAL-502 1627 chr3L 14076059 14076102 chr3L 14076158 14076201 6 99 2.0 5.0 3.5 1.3 142 chr3L 14076059 3` UTR,intron Pex1 +,btl + chr3L 14076130 intron btl + chr3L 14076201 intron btl + chr3L_6_14075001 chr3L_14075001 RAL-502 1628 chr3L 14089470 14089494 chr3L 14089587 14089611 10 117 3.0 0.5 1.8 3.6 141 chr3L 14089470 intergenic not near genes chr3L 14089540 intergenic not near genes chr3L 14089611 intergenic not near genes chr3L_10_14085001 chr3L_14085001 RAL-502 1629 chr3L 14162528 14162568 chr3L 14162625 14162647 14 89 2.5 4.0 3.2 3.3 119 chr3L 14162528 intergenic not near genes chr3L 14162588 intergenic not near genes chr3L 14162647 intergenic not near genes chr3L_14_14160001 chr3L_14160001 RAL-502 1630 chr3L 14245559 14245591 chr3L 14245673 14245705 1360 8 111 7.0 5.5 6.2 1.1 146 chr3L 14245559 3` UTR CR44561 - chr3L 14245632 3` UTR CR44561 - chr3L 14245705 intergenic CR44561 -,CR44560 + chr3L_8_14245001 chr3L_14245001 RAL-502 1631 chr3L 14267353 14267398 chr3L 14271813 14271846 F-element 13 4451 4.0 2.5 3.2 3.1 4493 chr3L 14267353 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271846 intergenic not near genes chr3L_13_14265001 chr3L_14265001 RAL-502 1632 chr3L 14272799 14272847 chr3L 14272969 14273018 14 162 2.0 1.5 1.8 5.0 219 chr3L 14272799 intergenic not near genes chr3L 14272908 intergenic not near genes chr3L 14273018 intergenic not near genes chr3L_14_14270001 chr3L_14270001 RAL-502 1633 chr3L 14282597 14282600 chr3L 14282671 14282697 6 93 0.5 12.0 6.2 0.8 100 chr3L 14282597 intron fz + chr3L 14282647 intron fz + chr3L 14282697 intron fz + chr3L_6_14280001 chr3L_14280001 RAL-502 1634 chr3L 14295969 14296010 chr3L 14296470 14296516 roo 12 501 4.0 3.5 3.8 2.5 547 chr3L 14295969 intron fz + chr3L 14296242 intron fz + chr3L 14296516 intron fz + chr3L_12_14295001 chr3L_14295001 RAL-502 1635 chr3L 14312033 14312054 chr3L 14316836 14316888 X-element 7 4825 1.0 4.5 2.8 1.8 4855 chr3L 14312033 exon fz + chr3L 14314460 intron fz + chr3L 14316888 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-502 1636 chr3L 14331437 14331488 chr3L 14331540 14331589 13 100 2.5 3.0 2.8 3.4 152 chr3L 14331437 intron fz + chr3L 14331513 intron fz + chr3L 14331589 intron fz + chr3L_13_14330001 chr3L_14330001 RAL-502 1637 chr3L 14338280 14338328 chr3L 14338396 14338442 18 114 0.5 3.5 2.0 6.0 162 chr3L 14338280 intron fz + chr3L 14338361 intron fz + chr3L 14338442 intron fz + chr3L_18_14335001 chr3L_14335001 RAL-502 1638 chr3L 14341421 14341438 chr3L 14341576 14341592 5 155 2.5 8.5 5.5 0.8 171 chr3L 14341421 intron fz + chr3L 14341506 intron fz + chr3L 14341592 intron fz + chr3L_5_14340001 chr3L_14340001 RAL-502 1639 chr3L 14356514 14356550 chr3L 14356598 14356650 10 95 7.0 5.0 6.0 1.4 136 chr3L 14356514 intron fz + chr3L 14356582 intron fz + chr3L 14356650 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-502 1640 chr3L 14395632 14395637 chr3L 14395756 14395761 4 124 7.0 0.5 3.8 0.8 129 chr3L 14395632 intergenic not near genes chr3L 14395696 intergenic not near genes chr3L 14395761 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-502 1641 chr3L 14443604 14443615 chr3L 14443813 14443824 4 209 7.0 3.5 5.2 0.6 220 chr3L 14443604 intron bbg - chr3L 14443714 intron bbg - chr3L 14443824 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-502 1642 chr3L 14443621 14443659 chr3L 14443812 14443867 12 203 4.5 3.5 4.0 2.4 246 chr3L 14443621 intron bbg - chr3L 14443744 intron bbg - chr3L 14443867 intron bbg - chr3L_12_14440001 chr3L_14440001 RAL-502 1643 chr3L 14445750 14445753 chr3L 14445901 14445925 6 170 3.5 3.5 3.5 1.3 175 chr3L 14445750 intron bbg - chr3L 14445838 intron bbg - chr3L 14445925 intron bbg - chr3L_6_14445001 chr3L_14445001 RAL-502 1644 chr3L 14462881 14462905 chr3L 14462989 14463013 4 107 0.0 4.5 2.2 1.2 132 chr3L 14462881 intron bbg - chr3L 14462947 intron bbg - chr3L 14463013 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-502 1645 chr3L 14468428 14468476 chr3L 14473654 14473702 copia 8 5226 2.5 2.5 2.5 2.3 5274 chr3L 14468428 intron bbg - chr3L 14471065 intron bbg - chr3L 14473702 intron bbg - chr3L_8_14470001 chr3L_14470001 RAL-502 1646 chr3L 14485999 14486038 chr3L 14486099 14486135 9 99 5.0 2.5 3.8 1.9 136 chr3L 14485999 intron bbg - chr3L 14486067 intron bbg - chr3L 14486135 intron bbg - chr3L_9_14485001 chr3L_14485001 RAL-502 1647 chr3L 14502420 14502461 chr3L 14502596 14502636 7 173 3.5 2.5 3.0 1.8 216 chr3L 14502420 intron bbg - chr3L 14502528 intron bbg - chr3L 14502636 intron bbg - chr3L_7_14500001 chr3L_14500001 RAL-502 1648 chr3L 14504721 14504775 chr3L 14505387 14505424 4 660 4.0 0.0 2.0 1.3 703 chr3L 14504721 intron bbg - chr3L 14505072 intron bbg - chr3L 14505424 intron bbg - chr3L_4_14505001 chr3L_14505001 RAL-502 1649 chr3L 14522079 14522121 chr3L 14522198 14522240 9 118 6.5 3.5 5.0 1.5 161 chr3L 14522079 intron bbg - chr3L 14522160 intron bbg - chr3L 14522240 intron bbg - chr3L_9_14520001 chr3L_14520001 RAL-502 1650 chr3L 14534754 14534758 chr3L 14534849 14534855 4 96 5.0 5.0 5.0 0.7 101 chr3L 14534754 intron bbg - chr3L 14534804 intron bbg - chr3L 14534855 intron bbg - chr3L_4_14530001 chr3L_14530001 RAL-502 1651 chr3L 14635690 14635734 chr3L 14635789 14635833 6 98 6.0 3.0 4.5 1.1 143 chr3L 14635690 intron dlp + chr3L 14635762 intron dlp + chr3L 14635833 intron dlp + chr3L_6_14635001 chr3L_14635001 RAL-502 1652 chr3L 14680429 14680447 chr3L 14680518 14680564 9 105 3.5 5.0 4.2 1.7 135 chr3L 14680429 exon ome + chr3L 14680496 exon ome + chr3L 14680564 exon ome + chr3L_9_14680001 chr3L_14680001 RAL-502 1653 chr3L 14702013 14702016 chr3L 14702100 14702115 4 94 0.0 5.5 2.8 1.1 102 chr3L 14702013 intron ome + chr3L 14702064 intron ome + chr3L 14702115 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-502 1654 chr3L 14724809 14724833 chr3L 14724912 14724922 8 102 0.0 9.0 4.5 1.5 113 chr3L 14724809 intron ome + chr3L 14724866 intron ome + chr3L 14724922 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-502 1655 chr3L 14725586 14725624 chr3L 14728598 14728637 Doc 8 3012 0.0 7.0 3.5 1.8 3051 chr3L 14725586 intron ome + chr3L 14727112 intron ome + chr3L 14728637 intron ome + chr3L_8_14725001 chr3L_14725001 RAL-502 1656 chr3L 14740875 14740915 chr3L 14740984 14741024 12 108 4.5 5.0 4.8 2.1 149 chr3L 14740875 intron ome + chr3L 14740950 intron ome + chr3L 14741024 intron ome + chr3L_12_14740001 chr3L_14740001 RAL-502 1657 chr3L 14825142 14825156 chr3L 14832889 14832902 Stalker2 4 7746 0.5 4.5 2.5 1.1 7760 chr3L 14825142 intron CG17839 + chr3L 14829022 intron CG17839 + chr3L 14832902 intron CG17839 + chr3L_4_14825001 chr3L_14825001 RAL-502 1658 chr3L 14893598 14893635 chr3L 14893701 14893742 7 101 4.0 6.0 5.0 1.2 144 chr3L 14893598 intergenic CG34245 - chr3L 14893670 intergenic CG34245 - chr3L 14893742 3` UTR CG34245 - chr3L_7_14890001 chr3L_14890001 RAL-502 1659 chr3L 14895885 14895926 chr3L 14896001 14896042 7 115 2.0 2.5 2.2 2.2 157 chr3L 14895885 intergenic not near genes chr3L 14895964 intergenic not near genes chr3L 14896042 intergenic not near genes chr3L_7_14895001 chr3L_14895001 RAL-502 1660 chr3L 14913884 14913921 chr3L 14913978 14914018 18 94 7.5 3.5 5.5 2.8 134 chr3L 14913884 intron DCX-EMAP + chr3L 14913951 intron DCX-EMAP + chr3L 14914018 intron DCX-EMAP + chr3L_18_14910001 chr3L_14910001 RAL-502 1661 chr3L 14954350 14954394 chr3L 14956039 14956080 transib2 8 1688 1.5 3.0 2.2 2.5 1730 chr3L 14954350 intergenic not near genes chr3L 14955215 intergenic not near genes chr3L 14956080 intergenic not near genes chr3L_8_14955001 chr3L_14955001 RAL-502 1662 chr3L 15006002 15006047 chr3L 15006176 15006220 8 160 2.5 2.5 2.5 2.3 218 chr3L 15006002 intron Reck - chr3L 15006111 intron Reck - chr3L 15006220 intron Reck - chr3L_8_15005001 chr3L_15005001 RAL-502 1663 chr3L 15094952 15094958 chr3L 15095067 15095074 4 116 6.0 3.0 4.5 0.7 122 chr3L 15094952 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095013 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095074 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_4_15095001 chr3L_15095001 RAL-502 1664 chr3L 15151202 15151235 chr3L 15151404 15151438 5 197 7.0 4.5 5.8 0.7 236 chr3L 15151202 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151438 intron FucTA + chr3L_5_15150001 chr3L_15150001 RAL-502 1665 chr3L 15165027 15165035 chr3L 15165146 15165154 4 118 5.0 0.0 2.5 1.1 127 chr3L 15165027 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165154 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-502 1666 chr3L 15209045 15209100 chr3L 15209151 15209206 6 106 9.5 6.5 8.0 0.7 161 chr3L 15209045 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209206 intergenic not near genes chr3L_6_15205001 chr3L_15205001 RAL-502 1667 chr3L 15219723 15219766 chr3L 15219825 15219867 4 102 8.5 11.5 10.0 0.4 144 chr3L 15219723 intergenic not near genes chr3L 15219795 intergenic not near genes chr3L 15219867 intergenic not near genes chr3L_4_15215001 chr3L_15215001 RAL-502 1668 chr3L 15257417 15257446 chr3L 15257650 15257679 8 232 1.0 2.0 1.5 3.2 262 chr3L 15257417 intergenic not near genes chr3L 15257548 intergenic not near genes chr3L 15257679 intergenic not near genes chr3L_8_15255001 chr3L_15255001 RAL-502 1669 chr3L 15295768 15295798 chr3L 15298629 15298661 gypsy5 7 2863 5.0 4.5 4.8 1.2 2893 chr3L 15295768 intergenic not near genes chr3L 15297214 intergenic not near genes chr3L 15298661 intergenic Best4 + chr3L_7_15295001 chr3L_15295001 RAL-502 1670 chr3L 15333124 15333170 chr3L 15333221 15333272 8 99 1.5 3.5 2.5 2.3 148 chr3L 15333124 intergenic CR43247 + chr3L 15333198 intergenic CR43247 + chr3L 15333272 intergenic CR43247 + chr3L_8_15330001 chr3L_15330001 RAL-502 1671 chr3L 15369245 15369281 chr3L 15369384 15369420 7 139 4.0 7.0 5.5 1.1 175 chr3L 15369245 intergenic not near genes chr3L 15369332 intergenic not near genes chr3L 15369420 intergenic not near genes chr3L_7_15365001 chr3L_15365001 RAL-502 1672 chr3L 15381153 15381181 chr3L 15381486 15381514 6 333 0.5 1.5 1.0 3.0 361 chr3L 15381153 intergenic not near genes chr3L 15381334 intergenic not near genes chr3L 15381514 intergenic not near genes chr3L_6_15380001 chr3L_15380001 RAL-502 1673 chr3L 15384942 15384986 chr3L 15385089 15385129 7 143 11.5 8.5 10.0 0.6 187 chr3L 15384942 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385129 intergenic not near genes chr3L_7_15385001 chr3L_15385001 RAL-502 1674 chr3L 15406004 15406052 chr3L 15406107 15406136 4 97 15.0 15.5 15.2 0.2 132 chr3L 15406004 intergenic not near genes chr3L 15406070 intergenic not near genes chr3L 15406136 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-502 1675 chr3L 15463438 15463493 chr3L 15463548 15463584 10 107 4.5 2.0 3.2 2.4 146 chr3L 15463438 intergenic not near genes chr3L 15463511 intergenic not near genes chr3L 15463584 intergenic not near genes chr3L_10_15460001 chr3L_15460001 RAL-502 1676 chr3L 15466025 15466133 chr3L 15466122 15466248 6 110 0.0 0.0 0.0 6.0 223 chr3L 15466025 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466248 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-502 1677 chr3L 15511471 15511482 chr3L 15511569 15511580 4 98 14.0 23.0 18.5 0.2 109 chr3L 15511471 intron Eip71CD + chr3L 15511526 intron Eip71CD + chr3L 15511580 intron Eip71CD + chr3L_4_15510001 chr3L_15510001 RAL-502 1678 chr3L 15541598 15541651 chr3L 15541709 15541762 8 110 4.0 0.0 2.0 2.7 164 chr3L 15541598 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541762 intron CrebA + chr3L_8_15540001 chr3L_15540001 RAL-502 1679 chr3L 15541933 15541972 chr3L 15542042 15542085 5 113 9.5 8.0 8.8 0.5 152 chr3L 15541933 intron CrebA + chr3L 15542009 intron CrebA + chr3L 15542085 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-502 1680 chr3L 15554907 15554952 chr3L 15556712 15556759 S-element 11 1806 1.5 5.0 3.2 2.6 1852 chr3L 15554907 intron AGO2 + chr3L 15555833 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_11_15555001 chr3L_15555001 RAL-502 1681 chr3L 15600180 15600186 chr3L 15600301 15600305 4 120 9.5 2.5 6.0 0.6 125 chr3L 15600180 intron RhoGAP71E + chr3L 15600242 intron RhoGAP71E + chr3L 15600305 intron RhoGAP71E + chr3L_4_15600001 chr3L_15600001 RAL-502 1682 chr3L 15615915 15615940 chr3L 15616029 15616056 6 116 13.5 12.0 12.8 0.4 141 chr3L 15615915 intron comm3 - chr3L 15615986 intron comm3 - chr3L 15616056 intron comm3 - chr3L_6_15615001 chr3L_15615001 RAL-502 1683 chr3L 15633174 15633196 chr3L 15633274 15633295 4 100 12.0 6.5 9.2 0.4 121 chr3L 15633174 intron comm3 - chr3L 15633234 intron comm3 - chr3L 15633295 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-502 1684 chr3L 15638008 15638036 chr3L 15638165 15638189 6 156 11.5 10.0 10.8 0.5 181 chr3L 15638008 intron comm3 - chr3L 15638098 intron comm3 - chr3L 15638189 intron comm3 - chr3L_6_15635001 chr3L_15635001 RAL-502 1685 chr3L 15639484 15639524 chr3L 15639586 15639598 8 98 11.5 14.5 13.0 0.6 114 chr3L 15639484 intron comm3 - chr3L 15639541 intron comm3 - chr3L 15639598 intron comm3 - chr3L_8_15635001 chr3L_15635001 RAL-502 1686 chr3L 15732110 15732152 chr3L 15732210 15732253 4 100 11.0 10.0 10.5 0.3 143 chr3L 15732110 intergenic not near genes chr3L 15732182 intergenic not near genes chr3L 15732253 intergenic not near genes chr3L_4_15730001 chr3L_15730001 RAL-502 1687 chr3L 15744580 15744617 chr3L 15745034 15745071 8 462 18.0 20.5 19.2 0.4 491 chr3L 15744580 intergenic not near genes chr3L 15744826 intergenic not near genes chr3L 15745071 intergenic not near genes chr3L_8_15740001 chr3L_15740001 RAL-502 1688 chr3L 15756860 15756911 chr3L 15756963 15756985 14 95 3.5 0.0 1.8 5.0 125 chr3L 15756860 intergenic not near genes chr3L 15756922 intergenic not near genes chr3L 15756985 intergenic not near genes chr3L_14_15755001 chr3L_15755001 RAL-502 1689 chr3L 15833805 15833845 chr3L 15834024 15834066 11 221 22.5 26.5 24.5 0.4 261 chr3L 15833805 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834066 3` UTR CG18081 - chr3L_11_15830001 chr3L_15830001 RAL-502 1690 chr3L 15883173 15883222 chr3L 15883485 15883508 12 308 4.0 12.5 8.2 1.3 335 chr3L 15883173 intron pHCl - chr3L 15883340 intron pHCl - chr3L 15883508 intron pHCl - chr3L_12_15880001 chr3L_15880001 RAL-502 1691 chr3L 15912537 15912579 chr3L 15912635 15912675 4 97 11.5 11.0 11.2 0.3 138 chr3L 15912537 intron sff - chr3L 15912606 intron sff - chr3L 15912675 intron sff - chr3L_4_15910001 chr3L_15910001 RAL-502 1692 chr3L 15929178 15929225 chr3L 15938345 15938392 roo 6 9167 3.0 1.5 2.2 1.9 9214 chr3L 15929178 intron Pka-C3 - chr3L 15933785 intron Pka-C3 - chr3L 15938392 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 RAL-502 1693 chr3L 15948730 15948774 chr3L 15948832 15948840 5 91 14.0 12.5 13.2 0.4 110 chr3L 15948730 intron Pka-C3 - chr3L 15948785 intron Pka-C3 - chr3L 15948840 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-502 1694 chr3L 15981659 15981708 chr3L 15981764 15981812 5 105 10.0 8.0 9.0 0.5 153 chr3L 15981659 intron,3` UTR brm -,CG17027 + chr3L 15981736 intron,3` UTR brm -,CG17027 + chr3L 15981812 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-502 1695 chr3L 15991504 15991530 chr3L 15991608 15991644 5 109 12.0 17.5 14.8 0.3 140 chr3L 15991504 3` UTR Hip14 + chr3L 15991574 3` UTR Hip14 + chr3L 15991644 3` UTR Hip14 + chr3L_5_15990001 chr3L_15990001 RAL-502 1696 chr3L 16077928 16077975 chr3L 16078057 16078086 8 124 20.5 21.0 20.8 0.4 158 chr3L 16077928 intron Mbs + chr3L 16078007 intron Mbs + chr3L 16078086 intron Mbs + chr3L_8_16075001 chr3L_16075001 RAL-502 1697 chr3L 16091819 16091866 chr3L 16092368 16092411 6 557 24.5 26.5 25.5 0.2 592 chr3L 16091819 exon ClC-c + chr3L 16092115 intron ClC-c + chr3L 16092411 intron ClC-c + chr3L_6_16090001 chr3L_16090001 RAL-502 1698 chr3L 16154073 16154103 chr3L 16154179 16154202 8 102 12.5 13.5 13.0 0.6 129 chr3L 16154073 intron CG5151 - chr3L 16154138 intron CG5151 - chr3L 16154202 intron CG5151 - chr3L_8_16150001 chr3L_16150001 RAL-502 1699 chr3L 16162590 16162620 chr3L 16162694 16162722 8 101 8.5 9.5 9.0 0.8 132 chr3L 16162590 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162722 intron CG5151 - chr3L_8_16160001 chr3L_16160001 RAL-502 1700 chr3L 16169809 16169854 chr3L 16170025 16170068 6 215 15.5 14.0 14.8 0.4 259 chr3L 16169809 exon CG33796 - chr3L 16169938 exon CG33796 - chr3L 16170068 exon CG33796 - chr3L_6_16165001 chr3L_16165001 RAL-502 1701 chr3L 16182060 16182077 chr3L 16182193 16182206 6 136 8.0 10.5 9.2 0.6 146 chr3L 16182060 intergenic not near genes chr3L 16182133 intergenic not near genes chr3L 16182206 intergenic not near genes chr3L_6_16180001 chr3L_16180001 RAL-502 1702 chr3L 16184088 16184139 chr3L 16188927 16188953 X-element 13 4836 4.0 4.0 4.0 2.6 4865 chr3L 16184088 intergenic not near genes chr3L 16186520 intergenic not near genes chr3L 16188953 intergenic not near genes chr3L_13_16185001 chr3L_16185001 RAL-502 1703 chr3L 16241888 16241918 chr3L 16241978 16242022 9 102 7.5 5.5 6.5 1.2 134 chr3L 16241888 intergenic not near genes chr3L 16241955 intergenic not near genes chr3L 16242022 intergenic not near genes chr3L_9_16240001 chr3L_16240001 RAL-502 1704 chr3L 16340263 16340288 chr3L 16340389 16340432 4 139 10.0 8.0 9.0 0.4 169 chr3L 16340263 intron CG4998 + chr3L 16340348 intron CG4998 + chr3L 16340432 intron CG4998 + chr3L_4_16340001 chr3L_16340001 RAL-502 1705 chr3L 16360885 16360912 chr3L 16360963 16361010 5 89 12.5 17.0 14.8 0.3 125 chr3L 16360885 intron CG45057 - chr3L 16360948 intron CG45057 - chr3L 16361010 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-502 1706 chr3L 16437048 16437099 chr3L 16437147 16437205 6 103 6.0 7.0 6.5 0.8 157 chr3L 16437048 intron,intron CG33158 +,dsx-c73A - chr3L 16437126 intron,intron CG33158 +,dsx-c73A - chr3L 16437205 intron,intron CG33158 +,dsx-c73A - chr3L_6_16435001 chr3L_16435001 RAL-502 1707 chr3L 16443832 16443854 chr3L 16446192 16446196 Doc 8 2356 5.5 4.5 5.0 1.3 2364 chr3L 16443832 intron,intron CG33158 +,dsx-c73A - chr3L 16445014 intron,intron CG33158 +,dsx-c73A - chr3L 16446196 intron,intron CG33158 +,dsx-c73A - chr3L_8_16445001 chr3L_16445001 RAL-502 1708 chr3L 16443864 16443875 chr3L 16446187 16446205 Doc 9 2347 2.5 3.5 3.0 2.2 2341 chr3L 16443864 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446205 intron,intron CG33158 +,dsx-c73A - chr3L_9_16445001 chr3L_16445001 RAL-502 1709 chr3L 16457528 16457558 chr3L 16457643 16457673 12 115 8.5 12.5 10.5 1.0 145 chr3L 16457528 intron CG33158 + chr3L 16457600 intron CG33158 + chr3L 16457673 intron CG33158 + chr3L_12_16455001 chr3L_16455001 RAL-502 1710 chr3L 16462714 16462750 chr3L 16462828 16462863 5 112 10.0 13.5 11.8 0.4 149 chr3L 16462714 intron CG33158 + chr3L 16462788 intron CG33158 + chr3L 16462863 intron CG33158 + chr3L_5_16460001 chr3L_16460001 RAL-502 1711 chr3L 16493960 16493981 chr3L 16494497 16494509 jockey 7 535 10.5 5.0 7.8 0.8 549 chr3L 16493960 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494234 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494509 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-502 1712 chr3L 16493986 16494013 chr3L 16494495 16494547 jockey 10 523 5.5 5.0 5.2 1.6 561 chr3L 16493986 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494266 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494547 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_10_16490001 chr3L_16490001 RAL-502 1713 chr3L 16533234 16533272 chr3L 16533331 16533376 9 104 6.5 1.0 3.8 1.9 142 chr3L 16533234 intron CG43373 - chr3L 16533305 intron CG43373 - chr3L 16533376 intron CG43373 - chr3L_9_16530001 chr3L_16530001 RAL-502 1714 chr3L 16533573 16533585 chr3L 16533700 16533715 7 130 1.5 8.0 4.8 1.2 142 chr3L 16533573 intron CG43373 - chr3L 16533644 intron CG43373 - chr3L 16533715 intron CG43373 - chr3L_7_16530001 chr3L_16530001 RAL-502 1715 chr3L 16540060 16540086 chr3L 16540165 16540176 4 103 11.5 18.5 15.0 0.2 116 chr3L 16540060 intron CG43373 - chr3L 16540118 intron CG43373 - chr3L 16540176 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-502 1716 chr3L 16555887 16555927 chr3L 16556013 16556050 4 126 14.5 12.5 13.5 0.3 163 chr3L 16555887 intergenic not near genes chr3L 16555968 intergenic not near genes chr3L 16556050 intergenic not near genes chr3L_4_16555001 chr3L_16555001 RAL-502 1717 chr3L 16616492 16616540 chr3L 16621840 16621883 297 10 5346 4.0 4.0 4.0 2.0 5391 chr3L 16616492 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621883 3` UTR Abl - chr3L_10_16615001 chr3L_16615001 RAL-502 1718 chr3L 16652663 16652716 chr3L 16652760 16652815 6 98 16.0 14.5 15.2 0.4 152 chr3L 16652663 intron Baldspot - chr3L 16652739 intron Baldspot - chr3L 16652815 intron Baldspot - chr3L_6_16650001 chr3L_16650001 RAL-502 1719 chr3L 16684004 16684044 chr3L 16689245 16689285 copia 4 5241 0.0 2.5 1.2 1.8 5281 chr3L 16684004 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689285 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-502 1720 chr3L 16757626 16757659 chr3L 16757734 16757769 8 107 3.5 6.0 4.8 1.4 143 chr3L 16757626 intergenic not near genes chr3L 16757698 intergenic not near genes chr3L 16757769 intergenic not near genes chr3L_8_16755001 chr3L_16755001 RAL-502 1721 chr3L 16764582 16764601 chr3L 16764705 16764728 6 124 11.0 4.0 7.5 0.7 146 chr3L 16764582 intergenic not near genes chr3L 16764655 intergenic not near genes chr3L 16764728 intergenic not near genes chr3L_6_16760001 chr3L_16760001 RAL-502 1722 chr3L 16845021 16845038 chr3L 16845153 16845171 4 132 5.5 5.5 5.5 0.6 150 chr3L 16845021 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845096 intergenic CG9669 -,CG9715 + chr3L 16845171 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-502 1723 chr3L 16867549 16867561 chr3L 16867646 16867658 5 97 6.5 5.0 5.8 0.7 109 chr3L 16867549 intron Lmpt + chr3L 16867604 intron Lmpt + chr3L 16867658 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-502 1724 chr3L 16867562 16867568 chr3L 16867615 16867666 4 86 6.5 3.0 4.8 0.7 104 chr3L 16867562 intron Lmpt + chr3L 16867614 intron Lmpt + chr3L 16867666 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-502 1725 chr3L 16869566 16869576 chr3L 16869666 16869673 5 100 15.0 7.0 11.0 0.4 107 chr3L 16869566 intron Lmpt + chr3L 16869620 intron Lmpt + chr3L 16869673 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-502 1726 chr3L 16869577 16869600 chr3L 16869657 16869662 8 92 9.0 3.5 6.2 1.1 85 chr3L 16869577 intron Lmpt + chr3L 16869620 intron Lmpt + chr3L 16869662 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-502 1727 chr3L 16941380 16941411 chr3L 16941501 16941532 13 120 4.0 0.0 2.0 4.3 152 chr3L 16941380 intron Cpr73D - chr3L 16941456 intron Cpr73D - chr3L 16941532 intron Cpr73D - chr3L_13_16940001 chr3L_16940001 RAL-502 1728 chr3L 16945714 16945725 chr3L 16954885 16954896 roo 5 9171 4.5 4.0 4.2 1.0 9182 chr3L 16945714 exon Obp73a + chr3L 16950305 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-502 1729 chr3L 16945728 16945761 chr3L 16954883 16954885 roo 16 9148 1.5 4.0 2.8 4.2 9157 chr3L 16945728 exon Obp73a + chr3L 16950306 intergenic not near genes chr3L 16954885 5` UTR Nc73EF + chr3L_16_16950001 chr3L_16950001 RAL-502 1730 chr3L 17026788 17026824 chr3L 17026871 17026913 6 92 4.0 5.5 4.8 1.0 125 chr3L 17026788 exon Fit2 + chr3L 17026850 3` UTR Fit2 + chr3L 17026913 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-502 1731 chr3L 17027150 17027180 chr3L 17027262 17027292 6 112 1.5 1.0 1.2 2.7 142 chr3L 17027150 intergenic Fit2 +,CG7730 + chr3L 17027221 intergenic Fit2 +,CG7730 + chr3L 17027292 intergenic Fit2 +,CG7730 + chr3L_6_17025001 chr3L_17025001 RAL-502 1732 chr3L 17034918 17034954 chr3L 17035126 17035161 G2 7 207 1.0 1.5 1.2 3.2 243 chr3L 17034918 intergenic not near genes chr3L 17035040 intergenic not near genes chr3L 17035161 intergenic not near genes chr3L_7_17035001 chr3L_17035001 RAL-502 1733 chr3L 17085001 17085033 chr3L 17094167 17094199 roo 11 9168 8.0 6.5 7.2 1.3 9198 chr3L 17085001 intron Rbp6 - chr3L 17089600 intron Rbp6 - chr3L 17094199 intron Rbp6 - chr3L_11_17085001 chr3L_17085001 RAL-502 1734 chr3L 17120632 17120685 chr3L 17120728 17120780 18 93 6.0 6.0 6.0 2.6 148 chr3L 17120632 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120780 intron Rbp6 - chr3L_18_17120001 chr3L_17120001 RAL-502 1735 chr3L 17149144 17149175 chr3L 17149245 17149264 12 98 4.5 0.0 2.2 3.8 120 chr3L 17149144 intron Rbp6 - chr3L 17149204 intron Rbp6 - chr3L 17149264 intron Rbp6 - chr3L_12_17145001 chr3L_17145001 RAL-502 1736 chr3L 17156304 17156357 chr3L 17156686 17156705 15 367 1.0 4.5 2.8 3.9 401 chr3L 17156304 intron Rbp6 - chr3L 17156504 intron Rbp6 - chr3L 17156705 intron Rbp6 - chr3L_15_17155001 chr3L_17155001 RAL-502 1737 chr3L 17202448 17202496 chr3L 17202629 17202677 17 178 5.0 4.0 4.5 3.1 229 chr3L 17202448 intron Rbp6 - chr3L 17202562 intron Rbp6 - chr3L 17202677 intron Rbp6 - chr3L_17_17200001 chr3L_17200001 RAL-502 1738 chr3L 17203622 17203647 chr3L 17203751 17203780 5 130 2.0 3.0 2.5 1.4 158 chr3L 17203622 intron Rbp6 - chr3L 17203701 intron Rbp6 - chr3L 17203780 intron Rbp6 - chr3L_5_17200001 chr3L_17200001 RAL-502 1739 chr3L 17272232 17272263 chr3L 17272385 17272416 6 152 1.0 3.5 2.2 1.9 184 chr3L 17272232 intergenic not near genes chr3L 17272324 intergenic not near genes chr3L 17272416 intergenic not near genes chr3L_6_17270001 chr3L_17270001 RAL-502 1740 chr3L 17315099 17315151 chr3L 17315209 17315261 16 107 1.5 4.5 3.0 4.0 162 chr3L 17315099 5` UTR mir-219 + chr3L 17315180 intergenic mir-219 + chr3L 17315261 intergenic mir-219 + chr3L_16_17315001 chr3L_17315001 RAL-502 1741 chr3L 17331050 17331093 chr3L 17331157 17331203 9 109 1.0 2.0 1.5 3.6 153 chr3L 17331050 intergenic not near genes chr3L 17331126 intergenic not near genes chr3L 17331203 intergenic not near genes chr3L_9_17330001 chr3L_17330001 RAL-502 1742 chr3L 17367414 17367459 chr3L 17367528 17367573 19 114 2.5 2.0 2.2 5.9 159 chr3L 17367414 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367573 intergenic Cad74A -,CR45688 + chr3L_19_17365001 chr3L_17365001 RAL-502 1743 chr3L 17408894 17408926 chr3L 17408990 17409021 6 95 3.0 0.5 1.8 2.1 127 chr3L 17408894 intron blot - chr3L 17408958 intron blot - chr3L 17409021 intron blot - chr3L_6_17405001 chr3L_17405001 RAL-502 1744 chr3L 17461091 17461123 chr3L 17461196 17461227 7 105 2.5 2.0 2.2 2.2 136 chr3L 17461091 intergenic not near genes chr3L 17461159 intergenic not near genes chr3L 17461227 intergenic not near genes chr3L_7_17460001 chr3L_17460001 RAL-502 1745 chr3L 17495208 17495250 chr3L 17495343 17495366 7 129 5.5 2.0 3.8 1.5 158 chr3L 17495208 intron,exon Oatp74D +,edin + chr3L 17495287 intron,3` UTR Oatp74D +,edin + chr3L 17495366 intron Oatp74D + chr3L_7_17495001 chr3L_17495001 RAL-502 1746 chr3L 17498102 17498114 chr3L 17498183 17498211 5 93 5.0 5.0 5.0 0.8 109 chr3L 17498102 intron Oatp74D + chr3L 17498156 intron Oatp74D + chr3L 17498211 intron Oatp74D + chr3L_5_17495001 chr3L_17495001 RAL-502 1747 chr3L 17510733 17510758 chr3L 17510837 17510862 6 103 1.5 9.0 5.2 1.0 129 chr3L 17510733 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510862 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-502 1748 chr3L 17516971 17516984 chr3L 17524549 17524562 412 6 7578 9.0 9.5 9.2 0.6 7591 chr3L 17516971 intron CG7564 + chr3L 17520766 intron CG7564 + chr3L 17524562 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-502 1749 chr3L 17516989 17517006 chr3L 17524542 17524584 412 4 7566 6.5 8.0 7.2 0.5 7595 chr3L 17516989 intron CG7564 + chr3L 17520786 intron CG7564 + chr3L 17524584 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-502 1750 chr3L 17535793 17535840 chr3L 17535927 17535962 12 129 4.5 3.5 4.0 2.4 169 chr3L 17535793 intron Nedd4 + chr3L 17535878 intron Nedd4 + chr3L 17535962 intron Nedd4 + chr3L_12_17535001 chr3L_17535001 RAL-502 1751 chr3L 17537747 17537793 chr3L 17537846 17537892 17 96 4.0 2.5 3.2 4.0 145 chr3L 17537747 intron Nedd4 + chr3L 17537820 intron Nedd4 + chr3L 17537892 intron Nedd4 + chr3L_17_17535001 chr3L_17535001 RAL-502 1752 chr3L 17578522 17578534 chr3L 17578642 17578655 4 121 8.0 0.0 4.0 0.8 133 chr3L 17578522 intron Eip74EF - chr3L 17578588 intron Eip74EF - chr3L 17578655 intron Eip74EF - chr3L_4_17575001 chr3L_17575001 RAL-502 1753 chr3L 17592767 17592818 chr3L 17592878 17592929 16 110 3.0 4.0 3.5 3.6 162 chr3L 17592767 intron Eip74EF - chr3L 17592848 intron Eip74EF - chr3L 17592929 intron Eip74EF - chr3L_16_17590001 chr3L_17590001 RAL-502 1754 chr3L 17624324 17624362 chr3L 17624421 17624459 13 96 5.0 2.5 3.8 2.7 135 chr3L 17624324 intron CG7510 + chr3L 17624392 intron CG7510 + chr3L 17624459 intron CG7510 + chr3L_13_17620001 chr3L_17620001 RAL-502 1755 chr3L 17632714 17632753 chr3L 17632834 17632886 5 130 0.0 1.5 0.8 2.8 172 chr3L 17632714 intergenic CR44567 -,CR44566 + chr3L 17632800 intergenic CR44567 - chr3L 17632886 intergenic CR44567 - chr3L_5_17630001 chr3L_17630001 RAL-502 1756 chr3L 17707715 17707735 chr3L 17707884 17707904 8 165 13.5 8.0 10.8 0.7 189 chr3L 17707715 intron Ccn + chr3L 17707810 intron Ccn + chr3L 17707904 intron Ccn + chr3L_8_17705001 chr3L_17705001 RAL-502 1757 chr3L 17707738 17707762 chr3L 17707879 17707929 9 161 5.0 7.0 6.0 1.3 191 chr3L 17707738 intron Ccn + chr3L 17707834 intron Ccn + chr3L 17707929 intron Ccn + chr3L_9_17705001 chr3L_17705001 RAL-502 1758 chr3L 17711491 17711520 chr3L 17711601 17711630 10 109 1.5 0.5 1.0 5.0 139 chr3L 17711491 intron Ccn + chr3L 17711560 intron Ccn + chr3L 17711630 intron Ccn + chr3L_10_17710001 chr3L_17710001 RAL-502 1759 chr3L 17730826 17730879 chr3L 17738184 17738237 mdg1 14 7357 3.5 2.5 3.0 3.5 7411 chr3L 17730826 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738237 intron Ccn + chr3L_14_17730001 chr3L_17730001 RAL-502 1760 chr3L 17739202 17739234 chr3L 17739463 17739502 5 266 5.5 6.5 6.0 0.7 300 chr3L 17739202 intron Ccn + chr3L 17739352 intron Ccn + chr3L 17739502 intron Ccn + chr3L_5_17735001 chr3L_17735001 RAL-502 1761 chr3L 17757800 17757842 chr3L 17757915 17757945 9 117 4.0 4.0 4.0 1.8 145 chr3L 17757800 intron,intron Adgf-A -,Msi - chr3L 17757872 intron,intron Adgf-A -,Msi - chr3L 17757945 intron,intron Adgf-A -,Msi - chr3L_9_17755001 chr3L_17755001 RAL-502 1762 chr3L 17790440 17790606 chr3L 17790595 17790891 12 160 0.5 0.5 0.5 8.0 451 chr3L 17790440 intergenic not near genes chr3L 17790666 intergenic CG42815 - chr3L 17790891 intergenic CG42815 - chr3L_12_17790001 chr3L_17790001 RAL-502 1763 chr3L 17790614 17790634 chr3L 17790899 17790919 4 285 0.5 3.0 1.8 1.4 305 chr3L 17790614 intergenic CG42815 - chr3L 17790766 intergenic CG42815 - chr3L 17790919 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-502 1764 chr3L 17799791 17799841 chr3L 17801597 17801648 S-element 10 1807 2.5 3.5 3.0 2.5 1857 chr3L 17799791 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801648 intron NUCB1 - chr3L_10_17800001 chr3L_17800001 RAL-502 1765 chr3L 17906579 17906605 chr3L 17906700 17906725 9 120 4.0 4.0 4.0 1.8 146 chr3L 17906579 intron Prestin - chr3L 17906652 intron Prestin - chr3L 17906725 intron Prestin - chr3L_9_17905001 chr3L_17905001 RAL-502 1766 chr3L 17917609 17917635 chr3L 17917902 17917944 6 300 0.0 0.5 0.2 5.0 335 chr3L 17917609 intergenic not near genes chr3L 17917776 intergenic not near genes chr3L 17917944 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-502 1767 chr3L 17918374 17918403 chr3L 17921197 17921200 opus 4 2816 1.0 6.0 3.5 0.9 2826 chr3L 17918374 intergenic not near genes chr3L 17919787 intergenic not near genes chr3L 17921200 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-502 1768 chr3L 18029941 18029970 chr3L 18030038 18030067 6 97 4.0 0.0 2.0 2.0 126 chr3L 18029941 intron Eip75B - chr3L 18030004 intron Eip75B - chr3L 18030067 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-502 1769 chr3L 18047699 18047728 chr3L 18056772 18056804 roo 6 9076 4.0 4.5 4.2 1.2 9105 chr3L 18047699 intron Eip75B - chr3L 18052252 intron Eip75B - chr3L 18056804 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-502 1770 chr3L 18064042 18064074 chr3L 18064148 18064180 9 105 2.0 1.0 1.5 3.6 138 chr3L 18064042 intron Eip75B - chr3L 18064111 intron Eip75B - chr3L 18064180 intron Eip75B - chr3L_9_18060001 chr3L_18060001 RAL-502 1771 chr3L 18077138 18077152 chr3L 18077253 18077267 9 115 6.5 4.5 5.5 1.4 129 chr3L 18077138 intergenic CR45392 + chr3L 18077202 intergenic CR45392 + chr3L 18077267 intergenic CR45392 + chr3L_9_18075001 chr3L_18075001 RAL-502 1772 chr3L 18092770 18092777 chr3L 18092903 18092911 5 134 7.5 0.0 3.8 1.0 141 chr3L 18092770 intron CG13698 - chr3L 18092840 intron CG13698 - chr3L 18092911 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-502 1773 chr3L 18092780 18092791 chr3L 18092902 18092925 7 133 6.5 0.0 3.2 1.7 145 chr3L 18092780 intron CG13698 - chr3L 18092852 intron CG13698 - chr3L 18092925 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-502 1774 chr3L 18119611 18119677 chr3L 18119743 18119795 11 120 0.0 6.5 3.2 2.6 184 chr3L 18119611 intron CG7341 + chr3L 18119703 intron CG7341 + chr3L 18119795 5` UTR CG7341 + chr3L_11_18115001 chr3L_18115001 RAL-502 1775 chr3L 18135744 18135757 chr3L 18135842 18135856 4 99 0.0 2.0 1.0 2.0 112 chr3L 18135744 intergenic CR44669 - chr3L 18135800 3` UTR CR44669 - chr3L 18135856 3` UTR CR44669 - chr3L_4_18135001 chr3L_18135001 RAL-502 1776 chr3L 18144130 18144176 chr3L 18144235 18144280 6 106 0.0 2.0 1.0 3.0 150 chr3L 18144130 intron gk + chr3L 18144205 intron gk + chr3L 18144280 intron gk + chr3L_6_18140001 chr3L_18140001 RAL-502 1777 chr3L 18147226 18147270 chr3L 18147327 18147357 10 87 6.5 0.5 3.5 2.2 131 chr3L 18147226 intergenic not near genes chr3L 18147292 intergenic not near genes chr3L 18147357 intergenic not near genes chr3L_10_18145001 chr3L_18145001 RAL-502 1778 chr3L 18172669 18172700 chr3L 18172765 18172795 7 96 8.5 2.0 5.2 1.1 126 chr3L 18172669 intron W - chr3L 18172732 intron W - chr3L 18172795 intron W - chr3L_7_18170001 chr3L_18170001 RAL-502 1779 chr3L 18175810 18175839 chr3L 18176055 18176097 8 255 2.5 2.5 2.5 2.3 287 chr3L 18175810 intron W - chr3L 18175954 intron W - chr3L 18176097 intron W - chr3L_8_18175001 chr3L_18175001 RAL-502 1780 chr3L 18198269 18198324 chr3L 18198384 18198432 17 110 3.5 4.0 3.8 3.5 163 chr3L 18198269 intergenic not near genes chr3L 18198350 intergenic not near genes chr3L 18198432 intergenic not near genes chr3L_17_18195001 chr3L_18195001 RAL-502 1781 chr3L 18221083 18221116 chr3L 18221184 18221206 12 98 0.5 0.0 0.2 10.0 123 chr3L 18221083 intergenic not near genes chr3L 18221144 intergenic not near genes chr3L 18221206 intergenic not near genes chr3L_12_18220001 chr3L_18220001 RAL-502 1782 chr3L 18223146 18223183 chr3L 18223249 18223296 6 106 4.5 0.0 2.2 1.9 150 chr3L 18223146 intergenic not near genes chr3L 18223221 intergenic not near genes chr3L 18223296 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-502 1783 chr3L 18248933 18248976 chr3L 18249051 18249094 9 118 2.0 3.5 2.8 2.4 161 chr3L 18248933 intergenic not near genes chr3L 18249014 intergenic not near genes chr3L 18249094 intergenic not near genes chr3L_9_18245001 chr3L_18245001 RAL-502 1784 chr3L 18262456 18262484 chr3L 18262559 18262587 7 103 2.0 3.0 2.5 2.0 131 chr3L 18262456 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262587 intergenic not near genes chr3L_7_18260001 chr3L_18260001 RAL-502 1785 chr3L 18273186 18273215 chr3L 18273373 18273399 5 186 0.0 2.5 1.2 2.3 213 chr3L 18273186 intergenic not near genes chr3L 18273292 intergenic not near genes chr3L 18273399 intergenic not near genes chr3L_5_18270001 chr3L_18270001 RAL-502 1786 chr3L 18301330 18301376 chr3L 18301439 18301485 9 108 1.0 1.5 1.2 4.1 155 chr3L 18301330 intergenic CG13700 - chr3L 18301408 intergenic CG13700 - chr3L 18301485 intergenic CG13700 - chr3L_9_18300001 chr3L_18300001 RAL-502 1787 chr3L 18376066 18376110 chr3L 18376171 18376202 5 104 5.0 0.0 2.5 1.4 136 chr3L 18376066 intergenic not near genes chr3L 18376134 intergenic not near genes chr3L 18376202 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-502 1788 chr3L 18395915 18395968 chr3L 18396021 18396075 15 104 6.0 4.5 5.2 2.4 160 chr3L 18395915 intergenic not near genes chr3L 18395995 intergenic not near genes chr3L 18396075 intergenic not near genes chr3L_15_18395001 chr3L_18395001 RAL-502 1789 chr3L 18408715 18408761 chr3L 18408821 18408866 10 105 1.5 3.0 2.2 3.1 151 chr3L 18408715 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408866 intergenic not near genes chr3L_10_18405001 chr3L_18405001 RAL-502 1790 chr3L 18436042 18436086 chr3L 18436160 18436203 10 117 3.0 1.0 2.0 3.3 161 chr3L 18436042 intergenic not near genes chr3L 18436122 intergenic not near genes chr3L 18436203 intergenic not near genes chr3L_10_18435001 chr3L_18435001 RAL-502 1791 chr3L 18448599 18448613 chr3L 18448711 18448724 4 112 7.5 1.0 4.2 0.8 125 chr3L 18448599 intergenic not near genes chr3L 18448662 intergenic not near genes chr3L 18448724 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-502 1792 chr3L 18456258 18456299 chr3L 18456366 18456407 13 107 6.5 5.5 6.0 1.9 149 chr3L 18456258 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456407 3` UTR CR44670 - chr3L_13_18455001 chr3L_18455001 RAL-502 1793 chr3L 18495263 18495267 chr3L 18495922 18495944 4 675 0.0 8.5 4.2 0.8 681 chr3L 18495263 intron AstC-R2 - chr3L 18495604 intron AstC-R2 - chr3L 18495944 intron AstC-R2 - chr3L_4_18495001 chr3L_18495001 RAL-502 1794 chr3L 18498043 18498076 chr3L 18498252 18498283 7 208 7.5 4.5 6.0 1.0 240 chr3L 18498043 intron AstC-R2 - chr3L 18498163 intron AstC-R2 - chr3L 18498283 intron AstC-R2 - chr3L_7_18495001 chr3L_18495001 RAL-502 1795 chr3L 18506117 18506161 chr3L 18509600 18509643 F-element 13 3480 1.0 3.5 2.2 4.1 3526 chr3L 18506117 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509643 intergenic not near genes chr3L_13_18505001 chr3L_18505001 RAL-502 1796 chr3L 18528609 18528652 chr3L 18537790 18537833 roo 12 9180 4.5 2.5 3.5 2.7 9224 chr3L 18528609 intergenic not near genes chr3L 18533221 intergenic not near genes chr3L 18537833 intergenic not near genes chr3L_12_18530001 chr3L_18530001 RAL-502 1797 chr3L 18546682 18546728 chr3L 18546795 18546841 15 112 2.0 3.0 2.5 4.3 159 chr3L 18546682 intergenic not near genes chr3L 18546762 intergenic not near genes chr3L 18546841 intergenic not near genes chr3L_15_18545001 chr3L_18545001 RAL-502 1798 chr3L 18562071 18562121 chr3L 18562180 18562216 13 107 3.5 1.5 2.5 3.7 145 chr3L 18562071 intron AstC-R1 + chr3L 18562144 intron AstC-R1 + chr3L 18562216 intron AstC-R1 + chr3L_13_18560001 chr3L_18560001 RAL-502 1799 chr3L 18582236 18582249 chr3L 18582303 18582354 7 97 4.5 1.5 3.0 1.8 118 chr3L 18582236 intergenic not near genes chr3L 18582295 intergenic not near genes chr3L 18582354 intergenic not near genes chr3L_7_18580001 chr3L_18580001 RAL-502 1800 chr3L 18593935 18593961 chr3L 18595935 18595961 Doc 8 1998 7.5 2.0 4.8 1.4 2026 chr3L 18593935 intergenic term - chr3L 18594948 intergenic not near genes chr3L 18595961 intergenic CR45389 + chr3L_8_18590001 chr3L_18590001 RAL-502 1801 chr3L 18638568 18638609 chr3L 18638671 18638723 10 113 2.0 1.5 1.8 3.6 155 chr3L 18638568 intron MYPT-75D + chr3L 18638646 intron MYPT-75D + chr3L 18638723 intron MYPT-75D + chr3L_10_18635001 chr3L_18635001 RAL-502 1802 chr3L 18710761 18710784 chr3L 18718733 18718756 Stalker2 7 7972 5.5 5.5 5.5 1.1 7995 chr3L 18710761 intergenic not near genes chr3L 18714758 intergenic not near genes chr3L 18718756 intergenic not near genes chr3L_7_18710001 chr3L_18710001 RAL-502 1803 chr3L 18721753 18721793 chr3L 18721864 18721904 16 109 1.5 2.5 2.0 5.3 151 chr3L 18721753 intergenic CG12477 - chr3L 18721828 intergenic CG12477 - chr3L 18721904 3` UTR CG12477 - chr3L_16_18720001 chr3L_18720001 RAL-502 1804 chr3L 18753532 18753565 chr3L 18753633 18753660 6 99 2.0 3.5 2.8 1.6 128 chr3L 18753532 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753660 intron ftz-f1 - chr3L_6_18750001 chr3L_18750001 RAL-502 1805 chr3L 18772394 18772433 chr3L 18781093 18781134 roo 22 8699 4.5 4.5 4.5 4.0 8740 chr3L 18772394 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781134 intron ftz-f1 - chr3L_22_18775001 chr3L_18775001 RAL-502 1806 chr3L 18784378 18784387 chr3L 18784487 18784496 4 109 7.0 5.5 6.2 0.6 118 chr3L 18784378 intron ftz-f1 - chr3L 18784437 intron ftz-f1 - chr3L 18784496 intron ftz-f1 - chr3L_4_18780001 chr3L_18780001 RAL-502 1807 chr3L 18797292 18797336 chr3L 18797396 18797439 9 103 2.5 6.0 4.2 1.7 147 chr3L 18797292 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797439 intron ftz-f1 - chr3L_9_18795001 chr3L_18795001 RAL-502 1808 chr3L 18853989 18854024 chr3L 18854110 18854145 4 120 3.5 2.5 3.0 1.0 156 chr3L 18853989 intergenic CR45387 + chr3L 18854067 intergenic CR45387 + chr3L 18854145 intergenic CR45387 + chr3L_4_18850001 chr3L_18850001 RAL-502 1809 chr3L 18924469 18924502 chr3L 18924565 18924598 8 95 2.0 3.5 2.8 2.1 129 chr3L 18924469 intron CG32204 - chr3L 18924534 intron CG32204 - chr3L 18924598 intron CG32204 - chr3L_8_18920001 chr3L_18920001 RAL-502 1810 chr3L 18933634 18933659 chr3L 18933724 18933772 10 110 2.0 2.0 2.0 3.3 138 chr3L 18933634 intron CG32204 - chr3L 18933703 intron CG32204 - chr3L 18933772 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-502 1811 chr3L 18969540 18969571 chr3L 18969636 18969667 6 94 3.5 3.0 3.2 1.4 127 chr3L 18969540 intergenic not near genes chr3L 18969604 intergenic not near genes chr3L 18969667 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-502 1812 chr3L 19008829 19008867 chr3L 19009187 19009225 jockey 15 356 3.5 6.5 5.0 2.5 396 chr3L 19008829 intron nkd - chr3L 19009027 intron nkd - chr3L 19009225 intron nkd - chr3L_15_19005001 chr3L_19005001 RAL-502 1813 chr3L 19015157 19015214 chr3L 19015261 19015314 5 103 0.0 0.5 0.2 4.2 157 chr3L 19015157 intron nkd - chr3L 19015236 intron nkd - chr3L 19015314 intron nkd - chr3L_5_19015001 chr3L_19015001 RAL-502 1814 chr3L 19082029 19082059 chr3L 19082149 19082181 10 119 6.0 7.5 6.8 1.3 152 chr3L 19082029 intron Mkp3 - chr3L 19082105 intron Mkp3 - chr3L 19082181 intron Mkp3 - chr3L_10_19080001 chr3L_19080001 RAL-502 1815 chr3L 19111383 19111409 chr3L 19111488 19111489 10 100 4.5 4.0 4.2 1.9 106 chr3L 19111383 intron CG14082 - chr3L 19111436 intron CG14082 - chr3L 19111489 intron CG14082 - chr3L_10_19110001 chr3L_19110001 RAL-502 1816 chr3L 19117024 19117043 chr3L 19124491 19124507 mdg1 6 7463 12.0 6.5 9.2 0.6 7483 chr3L 19117024 intron CG14082 - chr3L 19120766 intron CG14082 - chr3L 19124507 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-502 1817 chr3L 19117044 19117076 chr3L 19124490 19124538 mdg1 15 7455 3.5 6.5 5.0 2.5 7494 chr3L 19117044 intron CG14082 - chr3L 19120791 intron CG14082 - chr3L 19124538 intron CG14082 - chr3L_15_19120001 chr3L_19120001 RAL-502 1818 chr3L 19135087 19135125 chr3L 19135242 19135295 14 167 3.0 4.0 3.5 3.1 208 chr3L 19135087 intron CG14082 - chr3L 19135191 intron CG14082 - chr3L 19135295 intron CG14082 - chr3L_14_19135001 chr3L_19135001 RAL-502 1819 chr3L 19182370 19182416 chr3L 19182471 19182505 12 99 1.5 3.0 2.2 3.8 135 chr3L 19182370 intron fz2 - chr3L 19182438 intron fz2 - chr3L 19182505 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-502 1820 chr3L 19208054 19208089 chr3L 19209448 19209460 Doc 7 1387 3.0 3.0 3.0 1.8 1406 chr3L 19208054 intron fz2 - chr3L 19208757 intron fz2 - chr3L 19209460 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-502 1821 chr3L 19213235 19213243 chr3L 19213896 19213910 4 665 8.0 9.0 8.5 0.4 675 chr3L 19213235 intron fz2 - chr3L 19213572 intron fz2 - chr3L 19213910 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-502 1822 chr3L 19225180 19225198 chr3L 19225248 19225293 5 90 2.0 2.0 2.0 1.7 113 chr3L 19225180 intron fz2 - chr3L 19225236 intron fz2 - chr3L 19225293 intron fz2 - chr3L_5_19225001 chr3L_19225001 RAL-502 1823 chr3L 19226039 19226087 chr3L 19226156 19226204 16 113 3.0 5.0 4.0 3.2 165 chr3L 19226039 intron fz2 - chr3L 19226122 intron fz2 - chr3L 19226204 intron fz2 - chr3L_16_19225001 chr3L_19225001 RAL-502 1824 chr3L 19342753 19342771 chr3L 19342863 19342882 7 111 4.0 3.5 3.8 1.5 129 chr3L 19342753 3` UTR CG32206 - chr3L 19342818 3` UTR CG32206 - chr3L 19342882 3` UTR CG32206 - chr3L_7_19340001 chr3L_19340001 RAL-502 1825 chr3L 19417795 19417832 chr3L 19417879 19417931 5 91 5.5 3.0 4.2 1.0 136 chr3L 19417795 intergenic not near genes chr3L 19417863 intergenic not near genes chr3L 19417931 intergenic not near genes chr3L_5_19415001 chr3L_19415001 RAL-502 1826 chr3L 19430378 19430427 chr3L 19430476 19430525 9 97 4.5 2.0 3.2 2.1 147 chr3L 19430378 intergenic not near genes chr3L 19430452 intergenic not near genes chr3L 19430525 intergenic not near genes chr3L_9_19430001 chr3L_19430001 RAL-502 1827 chr3L 19544221 19544256 chr3L 19544317 19544352 6 95 3.5 2.5 3.0 1.5 131 chr3L 19544221 intergenic CG9279 -,l(3)76BDr - chr3L 19544286 intergenic l(3)76BDr -,CG9279 - chr3L 19544352 3` UTR l(3)76BDr - chr3L_6_19540001 chr3L_19540001 RAL-502 1828 chr3L 19820279 19820311 chr3L 19827848 19827880 412 5 7568 1.5 2.0 1.8 1.8 7601 chr3L 19820279 intron Deaf1 + chr3L 19824080 intron Deaf1 + chr3L 19827880 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-502 1829 chr3L 19861814 19861853 chr3L 19863622 19863661 S-element 13 1808 6.5 6.5 6.5 1.7 1847 chr3L 19861814 5` UTR CR45433 + chr3L 19862738 intergenic not near genes chr3L 19863661 intergenic not near genes chr3L_13_19860001 chr3L_19860001 RAL-502 1830 chr3L 19933517 19933559 chr3L 19934359 19934399 7 838 8.0 4.0 6.0 1.0 882 chr3L 19933517 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934399 intergenic CR45678 + chr3L_7_19930001 chr3L_19930001 RAL-502 1831 chr3L 19962945 19962979 chr3L 19963032 19963072 7 92 0.5 6.5 3.5 1.6 127 chr3L 19962945 intron Ac76E + chr3L 19963008 intron Ac76E + chr3L 19963072 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-502 1832 chr3L 19981186 19981234 chr3L 19981286 19981334 15 100 3.0 1.0 2.0 5.0 148 chr3L 19981186 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981334 intergenic CG17732 + chr3L_15_19980001 chr3L_19980001 RAL-502 1833 chr3L 20096260 20096276 chr3L 20096388 20096404 7 127 1.0 6.0 3.5 1.6 144 chr3L 20096260 intergenic not near genes chr3L 20096332 intergenic not near genes chr3L 20096404 intergenic not near genes chr3L_7_20095001 chr3L_20095001 RAL-502 1834 chr3L 20143065 20143114 chr3L 20143165 20143213 17 99 5.5 9.0 7.2 2.1 148 chr3L 20143065 intergenic not near genes chr3L 20143139 intergenic not near genes chr3L 20143213 intergenic not near genes chr3L_17_20140001 chr3L_20140001 RAL-502 1835 chr3L 20148265 20148317 chr3L 20148375 20148425 18 108 6.0 4.5 5.2 2.9 160 chr3L 20148265 intergenic not near genes chr3L 20148345 intergenic not near genes chr3L 20148425 intergenic not near genes chr3L_18_20145001 chr3L_20145001 RAL-502 1836 chr3L 20156147 20156191 chr3L 20156289 20156293 13 134 5.5 6.0 5.8 1.9 146 chr3L 20156147 intron CG42674 - chr3L 20156220 intron CG42674 - chr3L 20156293 intron CG42674 - chr3L_13_20155001 chr3L_20155001 RAL-502 1837 chr3L 20257316 20257360 chr3L 20258453 20258495 pogo 11 1138 4.5 4.5 4.5 2.0 1179 chr3L 20257316 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258495 intron rdgC + chr3L_11_20255001 chr3L_20255001 RAL-502 1838 chr3L 20283836 20283856 chr3L 20284273 20284294 INE-1 5 437 13.0 1.5 7.2 0.6 458 chr3L 20283836 intron gogo - chr3L 20284065 intron gogo - chr3L 20284294 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-502 1839 chr3L 20321114 20321119 chr3L 20342901 20342909 17.6 4 21788 11.5 50.0 30.8 0.1 21795 chr3L 20321114 exon Spn77Bb + chr3L 20332012 intergenic not near genes chr3L 20342909 exon Spn77Bc + chr3L_4_20330001 chr3L_20330001 RAL-502 1840 chr3L 20345591 20345640 chr3L 20345691 20345737 20 95 5.5 9.0 7.2 2.4 146 chr3L 20345591 intergenic Rbbp5 - chr3L 20345664 intergenic Rbbp5 - chr3L 20345737 3` UTR Rbbp5 - chr3L_20_20345001 chr3L_20345001 RAL-502 1841 chr3L 20386921 20386972 chr3L 20387040 20387094 13 120 6.0 2.5 4.2 2.5 173 chr3L 20386921 intron fbl + chr3L 20387008 intron fbl + chr3L 20387094 intron fbl + chr3L_13_20385001 chr3L_20385001 RAL-502 1842 chr3L 20462569 20462604 chr3L 20462670 20462704 5 101 1.5 2.5 2.0 1.7 135 chr3L 20462569 intron atk - chr3L 20462636 intron atk - chr3L 20462704 intron atk - chr3L_5_20460001 chr3L_20460001 RAL-502 1843 chr3L 20476740 20476777 chr3L 20484358 20484395 springer 10 7619 4.5 5.0 4.8 1.7 7655 chr3L 20476740 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484395 3` UTR ZnT77C - chr3L_10_20480001 chr3L_20480001 RAL-502 1844 chr3L 20487643 20487671 chr3L 20488113 20488138 INE-1 11 468 9.0 4.0 6.5 1.5 495 chr3L 20487643 intron ZnT77C - chr3L 20487890 intron ZnT77C - chr3L 20488138 exon ZnT77C - chr3L_11_20485001 chr3L_20485001 RAL-502 1845 chr3L 20590048 20590080 chr3L 20590606 20590637 412 4 551 6.0 6.0 6.0 0.6 589 chr3L 20590048 intergenic not near genes chr3L 20590342 intergenic not near genes chr3L 20590637 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-502 1846 chr3L 20694542 20694590 chr3L 20695061 20695107 16 515 4.5 2.5 3.5 3.6 565 chr3L 20694542 intron kni - chr3L 20694824 intron kni - chr3L 20695107 5` UTR kni - chr3L_16_20690001 chr3L_20690001 RAL-502 1847 chr3L 20819606 20819654 chr3L 20819849 20819895 11 242 6.5 2.5 4.5 2.0 289 chr3L 20819606 intron Pka-R1 + chr3L 20819750 intron Pka-R1 + chr3L 20819895 intron Pka-R1 + chr3L_11_20815001 chr3L_20815001 RAL-502 1848 chr3L 20821263 20821303 chr3L 20824894 20824931 NOF 11 3630 3.5 4.0 3.8 2.3 3668 chr3L 20821263 intron Pka-R1 + chr3L 20823097 intron Pka-R1 + chr3L 20824931 intron Pka-R1 + chr3L_11_20820001 chr3L_20820001 RAL-502 1849 chr3L 20849252 20849300 chr3L 20849350 20849398 10 98 4.5 3.0 3.8 2.1 146 chr3L 20849252 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849398 intron CG32432 - chr3L_10_20845001 chr3L_20845001 RAL-502 1850 chr3L 20872557 20872596 chr3L 20872691 20872731 7 134 5.5 3.0 4.2 1.3 174 chr3L 20872557 intron CG32432 - chr3L 20872644 intron CG32432 - chr3L 20872731 intron CG32432 - chr3L_7_20870001 chr3L_20870001 RAL-502 1851 chr3L 20890498 20890519 chr3L 20890565 20890602 5 83 5.0 3.5 4.2 1.0 104 chr3L 20890498 intergenic not near genes chr3L 20890550 intergenic not near genes chr3L 20890602 intergenic not near genes chr3L_5_20890001 chr3L_20890001 RAL-502 1852 chr3L 20890895 20890932 chr3L 20891014 20891026 8 117 5.0 2.0 3.5 1.8 131 chr3L 20890895 intergenic not near genes chr3L 20890960 intergenic not near genes chr3L 20891026 intergenic not near genes chr3L_8_20890001 chr3L_20890001 RAL-502 1853 chr3L 20913744 20913781 chr3L 20913832 20913851 7 90 3.0 5.0 4.0 1.4 107 chr3L 20913744 intergenic CR43930 - chr3L 20913798 intergenic CR43930 - chr3L 20913851 intergenic CR43930 - chr3L_7_20910001 chr3L_20910001 RAL-502 1854 chr3L 20917071 20917119 chr3L 20917167 20917216 12 95 6.5 5.5 6.0 1.7 145 chr3L 20917071 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917216 intergenic not near genes chr3L_12_20915001 chr3L_20915001 RAL-502 1855 chr3L 20948647 20948698 chr3L 20948758 20948790 18 108 1.5 4.0 2.8 4.7 143 chr3L 20948647 intron fng - chr3L 20948718 intron fng - chr3L 20948790 intron fng - chr3L_18_20945001 chr3L_20945001 RAL-502 1856 chr3L 20979133 20979178 chr3L 20979535 20979578 14 397 3.0 5.0 4.0 2.8 445 chr3L 20979133 intergenic not near genes chr3L 20979356 intergenic not near genes chr3L 20979578 intergenic not near genes chr3L_14_20975001 chr3L_20975001 RAL-502 1857 chr3L 20986746 20986791 chr3L 20986840 20986888 15 92 6.0 6.5 6.2 2.1 142 chr3L 20986746 intergenic not near genes chr3L 20986817 intergenic not near genes chr3L 20986888 intergenic not near genes chr3L_15_20985001 chr3L_20985001 RAL-502 1858 chr3L 21014907 21014932 chr3L 21023396 21023412 Tirant 6 8493 6.0 3.0 4.5 1.1 8505 chr3L 21014907 intron skd - chr3L 21019160 intron skd - chr3L 21023412 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-502 1859 chr3L 21151847 21151866 chr3L 21156951 21156970 flea 5 5104 9.5 3.5 6.5 0.7 5123 chr3L 21151847 intron Ac78C - chr3L 21154408 intron Ac78C - chr3L 21156970 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-502 1860 chr3L 21158579 21158628 chr3L 21158670 21158724 17 91 5.0 3.0 4.0 3.4 145 chr3L 21158579 intron Ac78C - chr3L 21158652 intron Ac78C - chr3L 21158724 intron Ac78C - chr3L_17_21155001 chr3L_21155001 RAL-502 1861 chr3L 21172820 21172870 chr3L 21172937 21172991 13 119 5.0 6.5 5.8 1.9 171 chr3L 21172820 intergenic chb +,asparagine-synthetase + chr3L 21172906 5` UTR chb + chr3L 21172991 5` UTR chb + chr3L_13_21170001 chr3L_21170001 RAL-502 1862 chr3L 21186039 21186085 chr3L 21186134 21186152 8 87 4.5 2.5 3.5 1.8 113 chr3L 21186039 intron CG42337 - chr3L 21186096 intron CG42337 - chr3L 21186152 intron CG42337 - chr3L_8_21185001 chr3L_21185001 RAL-502 1863 chr3L 21256538 21256562 chr3L 21256629 21256650 10 98 4.0 6.5 5.2 1.6 112 chr3L 21256538 intron Eip78C + chr3L 21256594 intron Eip78C + chr3L 21256650 intron Eip78C + chr3L_10_21255001 chr3L_21255001 RAL-502 1864 chr3L 21303698 21303739 chr3L 21303805 21303837 8 106 3.5 5.5 4.5 1.5 139 chr3L 21303698 intron CG11309 - chr3L 21303768 intron CG11309 - chr3L 21303837 intron CG11309 - chr3L_8_21300001 chr3L_21300001 RAL-502 1865 chr3L 21306128 21306177 chr3L 21315307 21315356 roo 8 9179 5.0 2.0 3.5 1.8 9228 chr3L 21306128 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315356 3` UTR Pc - chr3L_8_21310001 chr3L_21310001 RAL-502 1866 chr3L 21361708 21361748 chr3L 21362682 21362722 G2 14 972 5.5 6.5 6.0 2.0 1014 chr3L 21361708 intergenic CG32440 + chr3L 21362215 intergenic not near genes chr3L 21362722 intergenic not near genes chr3L_14_21360001 chr3L_21360001 RAL-502 1867 chr3L 21406979 21407001 chr3L 21407078 21407100 6 98 9.5 5.0 7.2 0.7 121 chr3L 21406979 intron rgn + chr3L 21407040 intron rgn + chr3L 21407100 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-502 1868 chr3L 21407004 21407028 chr3L 21407072 21407102 9 90 3.5 5.0 4.2 1.7 98 chr3L 21407004 intron rgn + chr3L 21407053 intron rgn + chr3L 21407102 intron rgn + chr3L_9_21405001 chr3L_21405001 RAL-502 1869 chr3L 21414525 21414541 chr3L 21414614 21414637 5 94 5.5 5.0 5.2 0.8 112 chr3L 21414525 intron rgn + chr3L 21414581 intron rgn + chr3L 21414637 intron rgn + chr3L_5_21410001 chr3L_21410001 RAL-502 1870 chr3L 21437601 21437633 chr3L 21437717 21437760 6 125 1.5 4.0 2.8 1.6 159 chr3L 21437601 3` UTR Aef1 + chr3L 21437680 3` UTR Aef1 + chr3L 21437760 3` UTR Aef1 + chr3L_6_21435001 chr3L_21435001 RAL-502 1871 chr3L 21498835 21498847 chr3L 21500474 21500502 1360 4 1650 11.0 10.0 10.5 0.3 1667 chr3L 21498835 intron Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-502 1872 chr3L 21501153 21501168 chr3L 21501267 21501282 1360 8 112 5.0 8.5 6.8 1.0 129 chr3L 21501153 intron Glg1 - chr3L 21501218 intron Glg1 - chr3L 21501282 intron Glg1 - chr3L_8_21500001 chr3L_21500001 RAL-502 1873 chr3L 21509634 21509687 chr3L 21509731 21509782 19 96 5.5 5.5 5.5 2.9 148 chr3L 21509634 intron M6 + chr3L 21509708 intron M6 + chr3L 21509782 intron M6 + chr3L_19_21505001 chr3L_21505001 RAL-502 1874 chr3L 21637304 21637355 chr3L 21637411 21637446 24 105 5.5 6.5 6.0 3.4 142 chr3L 21637304 exon CG32444 + chr3L 21637375 intron CG32444 + chr3L 21637446 intron CG32444 + chr3L_24_21635001 chr3L_21635001 RAL-502 1875 chr3L 21649758 21649804 chr3L 21650000 21650011 18 239 2.0 6.0 4.0 3.6 253 chr3L 21649758 intron CG43980 + chr3L 21649884 intron CG43980 + chr3L 21650011 intron CG43980 + chr3L_18_21645001 chr3L_21645001 RAL-502 1876 chr3L 21671037 21671088 chr3L 21671205 21671233 25 165 6.0 11.0 8.5 2.6 196 chr3L 21671037 intergenic not near genes chr3L 21671135 intergenic not near genes chr3L 21671233 intergenic not near genes chr3L_25_21670001 chr3L_21670001 RAL-502 1877 chr3L 21736355 21736366 chr3L 21736576 21736583 4 220 0.5 11.0 5.8 0.6 228 chr3L 21736355 intergenic CR43888 + chr3L 21736469 intergenic CR43888 + chr3L 21736583 intergenic CR43888 + chr3L_4_21735001 chr3L_21735001 RAL-502 1878 chr3L 21749295 21749349 chr3L 21754475 21754490 Doc 8 5168 11.0 3.0 7.0 1.0 5195 chr3L 21749295 intron Syn1 - chr3L 21751892 intron Syn1 - chr3L 21754490 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-502 1879 chr3L 21758501 21758521 chr3L 21758881 21758901 8 379 26.5 25.0 25.8 0.3 400 chr3L 21758501 intron Syn1 - chr3L 21758701 intron Syn1 - chr3L 21758901 intron Syn1 - chr3L_8_21755001 chr3L_21755001 RAL-502 1880 chr3L 21769047 21769083 chr3L 21769154 21769190 4 107 2.0 3.5 2.8 1.1 143 chr3L 21769047 intron,intron Syn1 -,CG42689 + chr3L 21769118 intron,intron Syn1 -,CG42689 + chr3L 21769190 intron,intron Syn1 -,CG42689 + chr3L_4_21765001 chr3L_21765001 RAL-502 1881 chr3L 21776667 21776851 chr3L 21776774 21776957 10 106 6.0 6.0 6.0 1.4 290 chr3L 21776667 intron,intron CG42689 +,CG42552 + chr3L 21776812 intron,intron CG42689 +,CG42552 + chr3L 21776957 exon,intron CG42689 +,CG42552 + chr3L_10_21775001 chr3L_21775001 RAL-502 1882 chr3L 21836709 21836761 chr3L 21836815 21836865 14 103 2.5 2.0 2.2 4.4 156 chr3L 21836709 3` UTR P5CDh1 - chr3L 21836787 3` UTR P5CDh1 - chr3L 21836865 3` UTR P5CDh1 - chr3L_14_21835001 chr3L_21835001 RAL-502 1883 chr3L 21849479 21849533 chr3L 21849580 21849635 13 101 4.0 5.5 4.8 2.2 156 chr3L 21849479 intron mub + chr3L 21849557 intron mub + chr3L 21849635 intron mub + chr3L_13_21845001 chr3L_21845001 RAL-502 1884 chr3L 21852259 21852284 chr3L 21852351 21852388 11 97 4.0 4.5 4.2 2.1 129 chr3L 21852259 intron mub + chr3L 21852324 intron mub + chr3L 21852388 intron mub + chr3L_11_21850001 chr3L_21850001 RAL-502 1885 chr3L 21901021 21901041 chr3L 21901128 21901153 8 110 2.0 5.0 3.5 1.8 132 chr3L 21901021 intron mub + chr3L 21901087 intron mub + chr3L 21901153 intron mub + chr3L_8_21900001 chr3L_21900001 RAL-502 1886 chr3L 21952434 21952483 chr3L 21953197 21953244 transib1 9 756 1.0 3.5 2.2 2.8 810 chr3L 21952434 intergenic not near genes chr3L 21952839 intergenic not near genes chr3L 21953244 intergenic not near genes chr3L_9_21950001 chr3L_21950001 RAL-502 1887 chr3L 22016350 22016388 chr3L 22016486 22016494 13 126 7.0 4.0 5.5 2.0 144 chr3L 22016350 intergenic not near genes chr3L 22016422 intergenic not near genes chr3L 22016494 intergenic not near genes chr3L_13_22015001 chr3L_22015001 RAL-502 1888 chr3L 22033668 22033715 chr3L 22033766 22033806 12 96 5.0 4.0 4.5 2.2 138 chr3L 22033668 intergenic not near genes chr3L 22033737 intergenic not near genes chr3L 22033806 intergenic not near genes chr3L_12_22030001 chr3L_22030001 RAL-502 1889 chr3L 22046170 22046215 chr3L 22046293 22046337 16 121 3.5 4.5 4.0 3.2 167 chr3L 22046170 intron Oct-TyrR + chr3L 22046254 intron Oct-TyrR + chr3L 22046337 intron Oct-TyrR + chr3L_16_22045001 chr3L_22045001 RAL-502 1890 chr3L 22099670 22099701 chr3L 22105865 22105907 3S18 11 6202 6.0 4.5 5.2 1.8 6237 chr3L 22099670 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105907 intergenic not near genes chr3L_11_22100001 chr3L_22100001 RAL-502 1891 chr3L 22124790 22124837 chr3L 22124892 22124937 13 99 4.5 7.5 6.0 1.9 147 chr3L 22124790 intergenic not near genes chr3L 22124864 intergenic not near genes chr3L 22124937 intergenic not near genes chr3L_13_22120001 chr3L_22120001 RAL-502 1892 chr3L 22137514 22137553 chr3L 22137599 22137645 8 88 4.0 4.0 4.0 1.6 131 chr3L 22137514 intron olf413 + chr3L 22137580 intron olf413 + chr3L 22137645 intron olf413 + chr3L_8_22135001 chr3L_22135001 RAL-502 1893 chr3L 22166431 22166468 chr3L 22166529 22166566 15 96 3.5 3.0 3.2 3.6 135 chr3L 22166431 intron olf413 + chr3L 22166498 intron olf413 + chr3L 22166566 intron olf413 + chr3L_15_22165001 chr3L_22165001 RAL-502 1894 chr3L 22169456 22169487 chr3L 22169563 22169599 22 111 4.5 8.5 6.5 2.9 143 chr3L 22169456 intron olf413 + chr3L 22169528 intron olf413 + chr3L 22169599 intron olf413 + chr3L_22_22165001 chr3L_22165001 RAL-502 1895 chr3L 22411365 22411387 chr3L 22411448 22411452 4 80 4.5 1.5 3.0 1.0 87 chr3L 22411365 intergenic not near genes chr3L 22411408 intergenic not near genes chr3L 22411452 intergenic not near genes chr3L_4_22410001 chr3L_22410001 RAL-502 1896 chr3L 22522689 22522729 chr3L 22522786 22522823 5 95 4.5 3.0 3.8 1.0 134 chr3L 22522689 intergenic not near genes chr3L 22522756 intergenic not near genes chr3L 22522823 intergenic not near genes chr3L_5_22520001 chr3L_22520001 RAL-502 1897 chr3L 22543063 22543102 chr3L 22543158 22543197 8 95 2.0 2.0 2.0 2.7 134 chr3L 22543063 intergenic not near genes chr3L 22543130 intergenic not near genes chr3L 22543197 intergenic not near genes chr3L_8_22540001 chr3L_22540001 RAL-502 1898 chr3L 22555748 22555800 chr3L 22563238 22563274 blood 11 7484 3.0 3.5 3.2 2.6 7526 chr3L 22555748 intergenic not near genes chr3L 22559511 intergenic not near genes chr3L 22563274 intergenic not near genes chr3L_11_22555001 chr3L_22555001 RAL-502 1899 chr3L 22570420 22570456 chr3L 22570568 22570618 13 158 5.0 5.5 5.2 2.1 198 chr3L 22570420 intergenic not near genes chr3L 22570519 intergenic not near genes chr3L 22570618 intergenic not near genes chr3L_13_22570001 chr3L_22570001 RAL-502 1900 chr3L 22577629 22577646 chr3L 22582408 22582437 Doc 8 4795 3.5 2.5 3.0 2.0 4808 chr3L 22577629 intergenic not near genes chr3L 22580033 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-502 1901 chr3L 22603898 22603949 chr3L 22603999 22604051 17 101 2.0 6.0 4.0 3.4 153 chr3L 22603898 intron CG14459 - chr3L 22603974 intron CG14459 - chr3L 22604051 intron CG14459 - chr3L_17_22600001 chr3L_22600001 RAL-502 1902 chr3L 22617171 22617216 chr3L 22624640 22624688 blood 7 7468 7.0 2.0 4.5 1.3 7517 chr3L 22617171 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624688 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-502 1903 chr3L 22626858 22626903 chr3L 22626968 22627013 19 109 5.5 12.0 8.8 1.9 155 chr3L 22626858 intron CG14459 - chr3L 22626936 intron CG14459 - chr3L 22627013 intron CG14459 - chr3L_19_22625001 chr3L_22625001 RAL-502 1904 chr3L 22761386 22761414 chr3L 22766833 22766868 Ivk 6 5452 6.0 10.0 8.0 0.7 5482 chr3L 22761386 intron SPoCk + chr3L 22764127 intron SPoCk + chr3L 22766868 intron SPoCk + chr3L_6_22760001 chr3L_22760001 RAL-502 1905 chr3L 22853671 22853723 chr3L 22853777 22853829 15 103 1.5 5.0 3.2 3.6 158 chr3L 22853671 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853829 5` UTR CR43426 + chr3L_15_22850001 chr3L_22850001 RAL-502 1906 chr3L 22865970 22866008 chr3L 22867123 22867161 Doc 12 1153 6.0 5.0 5.5 1.8 1191 chr3L 22865970 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867161 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-502 1907 chr3L 22894242 22894250 chr3L 22894417 22894441 6 187 5.0 4.5 4.8 1.0 199 chr3L 22894242 intergenic slif + chr3L 22894342 intergenic not near genes chr3L 22894441 intergenic not near genes chr3L_6_22890001 chr3L_22890001 RAL-502 1908 chr3L 22897175 22897226 chr3L 22897278 22897315 25 98 3.5 6.0 4.8 4.3 140 chr3L 22897175 intergenic not near genes chr3L 22897245 intergenic not near genes chr3L 22897315 intergenic not near genes chr3L_25_22895001 chr3L_22895001 RAL-502 1909 chr3L 22908066 22908066 chr3L 24821492 24821494 5 1913427 28.0 14.0 21.0 0.2 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_5_23860001 chr3L_23860001 RAL-502 1910 chr3L 19220634 19220637 chr3L 22908067 22908067 5 3687432 21.0 28.5 24.8 0.2 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-502 1911 chr3L 22908067 22908067 chr3L 24821492 24821494 4 1913426 28.5 14.0 21.2 0.2 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-502 1912 chr3L 22943689 22943741 chr3L 22943915 22943948 15 223 5.0 4.5 4.8 2.6 259 chr3L 22943689 intergenic not near genes chr3L 22943818 intergenic not near genes chr3L 22943948 intergenic not near genes chr3L_15_22940001 chr3L_22940001 RAL-502 1913 chr3L 22989853 22989887 chr3L 22996837 22996881 297 11 6993 9.0 3.5 6.2 1.5 7028 chr3L 22989853 intergenic not near genes chr3L 22993367 intergenic not near genes chr3L 22996881 intergenic not near genes chr3L_11_22990001 chr3L_22990001 RAL-502 1914 chr3L 23218022 23218076 chr3L 23218520 23218576 20 491 4.0 4.0 4.0 4.0 554 chr3L 23218022 intron nAChRalpha4 + chr3L 23218299 intron nAChRalpha4 + chr3L 23218576 intron nAChRalpha4 + chr3L_20_23215001 chr3L_23215001 RAL-502 1915 chr3L 23278831 23278862 chr3L 23278960 23278990 6 128 15.5 15.5 15.5 0.4 159 chr3L 23278831 intron nAChRalpha4 + chr3L 23278910 intron nAChRalpha4 + chr3L 23278990 intron nAChRalpha4 + chr3L_6_23275001 chr3L_23275001 RAL-502 1916 chr3L 24008373 24008421 chr3L 24008621 24008670 29 246 3.0 3.5 3.2 6.9 297 chr3L 24008373 intergenic not near genes chr3L 24008522 intergenic not near genes chr3L 24008670 intergenic not near genes chr3L_29_24005001 chr3L_24005001 RAL-502 1917 chr3L 24012403 24012433 chr3L 24020747 24020791 roo 7 8356 3.5 5.5 4.5 1.3 8388 chr3L 24012403 intergenic not near genes chr3L 24016597 intergenic not near genes chr3L 24020791 intergenic not near genes chr3L_7_24015001 chr3L_24015001 RAL-502 1918 chr3L 24168769 24168808 chr3L 24176117 24176151 ZAM 4 7340 7.0 4.5 5.8 0.6 7382 chr3L 24168769 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176151 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-502 1919 chr3L 24791876 24791916 chr3L 24796675 24796714 Doc 7 4799 1.0 3.0 2.0 2.3 4838 chr3L 24791876 intergenic not near genes chr3L 24794295 intergenic not near genes chr3L 24796714 intergenic not near genes chr3L_7_24790001 chr3L_24790001 RAL-502 1920 chr3L 25354036 25354076 chr3L 25354223 25354239 7 191 4.5 8.0 6.2 1.0 203 chr3L 25354036 intergenic not near genes chr3L 25354138 intergenic not near genes chr3L 25354239 intergenic not near genes chr3L_7_25350001 chr3L_25350001 RAL-502 1921 chr3L 27390443 27390709 chr3L 27390674 27390808 7 112 29.0 30.0 29.5 0.2 365 chr3L 27390443 intron Dbp80 + chr3L 27390626 intron Dbp80 + chr3L 27390808 intron Dbp80 + chr3L_7_27390001 chr3L_27390001 RAL-502 1922 chr3R 2534145 2534167 chr3R 2541703 2541739 8 7576 9.5 16.5 13.0 0.6 7594 chr3R 2534145 intergenic not near genes chr3R 2537942 intergenic not near genes chr3R 2541739 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-502 1923 chr3R 2998444 2998493 chr3R 2998540 2998589 14 93 1.5 2.0 1.8 5.0 145 chr3R 2998444 intron CG42618 - chr3R 2998516 intron CG42618 - chr3R 2998589 intron CG42618 - chr3R_14_2995001 chr3R_2995001 RAL-502 1924 chr3R 4105021 4105063 chr3R 4110245 4110287 copia 4 5224 2.0 2.0 2.0 1.3 5266 chr3R 4105021 intergenic not near genes chr3R 4107654 intergenic not near genes chr3R 4110287 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-502 1925 chr3R 4206052 4206091 chr3R 4211644 4211686 mdg3 10 5594 6.5 4.0 5.2 1.6 5634 chr3R 4206052 intron CG14636 - chr3R 4208869 intron CG14636 - chr3R 4211686 intron CG14636 - chr3R_10_4205001 chr3R_4205001 RAL-502 1926 chr3R 4366766 4366771 chr3R 4375167 4375174 roo 4 8402 4.0 5.5 4.8 0.7 8408 chr3R 4366766 3` UTR CG1090 + chr3R 4370970 intergenic not near genes chr3R 4375174 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-502 1927 chr3R 4408397 4408439 chr3R 4412721 4412761 Juan 13 4323 4.0 9.0 6.5 1.7 4364 chr3R 4408397 intron CG32944 - chr3R 4410579 intron CG32944 - chr3R 4412761 intron CG32944 - chr3R_13_4410001 chr3R_4410001 RAL-502 1928 chr3R 4609526 4609581 chr3R 4610710 4610762 1360 20 1176 5.5 6.5 6.0 2.9 1236 chr3R 4609526 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610762 intergenic not near genes chr3R_20_4610001 chr3R_4610001 RAL-502 1929 chr3R 4657259 4657270 chr3R 4657583 4657590 5 323 3.0 12.0 7.5 0.6 331 chr3R 4657259 intron spartin + chr3R 4657424 intron spartin + chr3R 4657590 exon spartin + chr3R_5_4655001 chr3R_4655001 RAL-502 1930 chr3R 4680691 4680741 chr3R 4680789 4680840 16 98 2.0 4.5 3.2 3.8 149 chr3R 4680691 intron CG43427 + chr3R 4680766 intron CG43427 + chr3R 4680840 intron CG43427 + chr3R_16_4680001 chr3R_4680001 RAL-502 1931 chr3R 4733662 4733698 chr3R 4733803 4733842 8 143 4.0 2.5 3.2 1.9 180 chr3R 4733662 intergenic not near genes chr3R 4733752 intergenic not near genes chr3R 4733842 intergenic not near genes chr3R_8_4730001 chr3R_4730001 RAL-502 1932 chr3R 4753229 4753246 chr3R 4757552 4757569 F-element 6 4322 8.0 7.0 7.5 0.7 4340 chr3R 4753229 intron,intron atms +,CG44098 - chr3R 4755399 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-502 1933 chr3R 4753248 4753269 chr3R 4757551 4757575 F-element 7 4313 5.0 6.0 5.5 1.1 4327 chr3R 4753248 intron,intron atms +,CG44098 - chr3R 4755412 intron,intron atms +,CG44098 - chr3R 4757575 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-502 1934 chr3R 4796094 4796149 chr3R 4796236 4796288 20 139 3.0 6.0 4.5 3.6 194 chr3R 4796094 intron ctrip - chr3R 4796191 intron ctrip - chr3R 4796288 intron ctrip - chr3R_20_4795001 chr3R_4795001 RAL-502 1935 chr3R 4861546 4861594 chr3R 4861647 4861687 9 89 5.0 6.0 5.5 1.4 141 chr3R 4861546 intron opa + chr3R 4861616 intron opa + chr3R 4861687 intron opa + chr3R_9_4860001 chr3R_4860001 RAL-502 1936 chr3R 4887468 4887502 chr3R 4894860 4894874 rover 8 7391 3.5 3.5 3.5 1.8 7406 chr3R 4887468 intergenic not near genes chr3R 4891171 intergenic not near genes chr3R 4894874 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-502 1937 chr3R 4922326 4922335 chr3R 4922425 4922434 4 99 6.0 3.0 4.5 0.7 108 chr3R 4922326 intron Cdep + chr3R 4922380 intron Cdep + chr3R 4922434 intron Cdep + chr3R_4_4920001 chr3R_4920001 RAL-502 1938 chr3R 4922338 4922350 chr3R 4922421 4922446 5 94 2.5 2.5 2.5 1.4 108 chr3R 4922338 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922446 intron Cdep + chr3R_5_4920001 chr3R_4920001 RAL-502 1939 chr3R 4943596 4943622 chr3R 4943721 4943747 6 125 6.5 5.0 5.8 0.9 151 chr3R 4943596 intron Cdep + chr3R 4943672 intron Cdep + chr3R 4943747 intron Cdep + chr3R_6_4940001 chr3R_4940001 RAL-502 1940 chr3R 5045824 5045875 chr3R 5052946 5052997 HMS-Beagle 12 7122 3.0 3.0 3.0 3.0 7173 chr3R 5045824 3` UTR CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052997 intergenic CR45588 - chr3R_12_5045001 chr3R_5045001 RAL-502 1941 chr3R 5067963 5068014 chr3R 5073500 5073545 mdg3 18 5534 2.0 4.0 3.0 4.5 5582 chr3R 5067963 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073545 intergenic not near genes chr3R_18_5070001 chr3R_5070001 RAL-502 1942 chr3R 5236201 5236244 chr3R 5236348 5236386 7 147 2.5 3.5 3.0 1.8 185 chr3R 5236201 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236294 3` UTR rtp - chr3R 5236386 3` UTR rtp - chr3R_7_5235001 chr3R_5235001 RAL-502 1943 chr3R 5250867 5250915 chr3R 5250991 5251045 15 129 6.0 5.0 5.5 2.3 178 chr3R 5250867 intron CG12163 - chr3R 5250956 intron CG12163 - chr3R 5251045 intron CG12163 - chr3R_15_5250001 chr3R_5250001 RAL-502 1944 chr3R 5278081 5278091 chr3R 5278181 5278192 4 100 9.0 10.0 9.5 0.4 111 chr3R 5278081 intron mtd - chr3R 5278136 intron mtd - chr3R 5278192 intron mtd - chr3R_4_5275001 chr3R_5275001 RAL-502 1945 chr3R 5278095 5278121 chr3R 5278171 5278201 11 92 5.5 6.5 6.0 1.6 106 chr3R 5278095 intron mtd - chr3R 5278148 intron mtd - chr3R 5278201 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-502 1946 chr3R 5338380 5338405 chr3R 5343577 5343602 Rt1c 12 5196 9.0 8.5 8.8 1.2 5222 chr3R 5338380 intron mtd - chr3R 5340991 intron mtd - chr3R 5343602 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-502 1947 chr3R 5338407 5338426 chr3R 5343572 5343614 Rt1c 11 5191 6.0 7.5 6.8 1.4 5207 chr3R 5338407 intron mtd - chr3R 5341010 intron mtd - chr3R 5343614 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-502 1948 chr3R 5445950 5445994 chr3R 5452429 5452473 Burdock 15 6478 4.0 2.5 3.2 3.6 6523 chr3R 5445950 intron CG14669 + chr3R 5449212 intron CG14669 + chr3R 5452473 intron CG14669 + chr3R_15_5445001 chr3R_5445001 RAL-502 1949 chr3R 5696130 5696146 chr3R 5696246 5696262 4 115 1.5 8.5 5.0 0.7 132 chr3R 5696130 intron plx + chr3R 5696196 intron plx + chr3R 5696262 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-502 1950 chr3R 5712062 5712114 chr3R 5712170 5712222 10 106 3.0 3.5 3.2 2.4 160 chr3R 5712062 3` UTR plx + chr3R 5712142 3` UTR plx + chr3R 5712222 3` UTR plx + chr3R_10_5710001 chr3R_5710001 RAL-502 1951 chr3R 5745999 5746045 chr3R 5746260 5746306 pogo 16 260 0.5 3.5 2.0 5.3 307 chr3R 5745999 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746306 3` UTR Madm + chr3R_16_5745001 chr3R_5745001 RAL-502 1952 chr3R 5747020 5747041 chr3R 5753207 5753252 diver 7 6207 3.0 3.0 3.0 1.8 6232 chr3R 5747020 intergenic Madm + chr3R 5750136 intergenic not near genes chr3R 5753252 intergenic CG2091 - chr3R_7_5750001 chr3R_5750001 RAL-502 1953 chr3R 5765619 5765656 chr3R 5765711 5765726 4 89 7.0 4.5 5.8 0.6 107 chr3R 5765619 intron CG2082 - chr3R 5765672 intron CG2082 - chr3R 5765726 intron CG2082 - chr3R_4_5765001 chr3R_5765001 RAL-502 1954 chr3R 5769215 5769260 chr3R 5769330 5769364 14 116 5.5 2.5 4.0 2.8 149 chr3R 5769215 intron CG2082 - chr3R 5769290 intron CG2082 - chr3R 5769364 intron CG2082 - chr3R_14_5765001 chr3R_5765001 RAL-502 1955 chr3R 5772360 5772407 chr3R 5772538 5772585 16 178 3.0 3.5 3.2 3.8 225 chr3R 5772360 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772585 intron CG2082 - chr3R_16_5770001 chr3R_5770001 RAL-502 1956 chr3R 5809097 5809105 chr3R 5809358 5809366 pogo 4 260 7.5 5.0 6.2 0.6 269 chr3R 5809097 3` UTR CG11000 + chr3R 5809232 3` UTR CG11000 + chr3R 5809366 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-502 1957 chr3R 5809114 5809142 chr3R 5809353 5809403 pogo 10 257 2.5 4.5 3.5 2.2 289 chr3R 5809114 3` UTR CG11000 + chr3R 5809258 3` UTR CG11000 + chr3R 5809403 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 RAL-502 1958 chr3R 5822366 5822408 chr3R 5823553 5823595 1360 18 1186 4.0 3.5 3.8 3.8 1229 chr3R 5822366 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823595 3` UTR CG2023 - chr3R_18_5820001 chr3R_5820001 RAL-502 1959 chr3R 5896953 5897000 chr3R 5897330 5897379 12 376 5.0 6.5 5.8 1.8 426 chr3R 5896953 intron CG34113 - chr3R 5897166 intron CG34113 - chr3R 5897379 intron CG34113 - chr3R_12_5895001 chr3R_5895001 RAL-502 1960 chr3R 5927563 5927571 chr3R 5927802 5927820 pogo 6 247 3.5 4.0 3.8 1.2 257 chr3R 5927563 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927820 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-502 1961 chr3R 5927572 5927584 chr3R 5927801 5927842 pogo 11 254 1.5 4.0 2.8 2.9 270 chr3R 5927572 intron CG34113 - chr3R 5927707 intron CG34113 - chr3R 5927842 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-502 1962 chr3R 5934746 5934768 chr3R 5934881 5934903 4 135 6.5 5.5 6.0 0.6 157 chr3R 5934746 intron CG34113 - chr3R 5934824 intron CG34113 - chr3R 5934903 intron CG34113 - chr3R_4_5930001 chr3R_5930001 RAL-502 1963 chr3R 5942452 5942495 chr3R 5942570 5942611 8 117 5.0 3.0 4.0 1.6 159 chr3R 5942452 intron CG34113 - chr3R 5942532 intron CG34113 - chr3R 5942611 intron CG34113 - chr3R_8_5940001 chr3R_5940001 RAL-502 1964 chr3R 5943392 5943416 chr3R 5943487 5943515 12 98 1.5 4.5 3.0 3.0 123 chr3R 5943392 intron CG34113 - chr3R 5943454 intron CG34113 - chr3R 5943515 intron CG34113 - chr3R_12_5940001 chr3R_5940001 RAL-502 1965 chr3R 6015567 6015580 chr3R 6015670 6015685 8 104 0.0 11.0 5.5 1.2 118 chr3R 6015567 intergenic not near genes chr3R 6015626 intergenic not near genes chr3R 6015685 intergenic not near genes chr3R_8_6015001 chr3R_6015001 RAL-502 1966 chr3R 6015983 6015993 chr3R 6024441 6024481 Tirant 4 8486 4.5 2.5 3.5 0.9 8498 chr3R 6015983 intergenic not near genes chr3R 6020232 intergenic not near genes chr3R 6024481 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-502 1967 chr3R 6133131 6133143 chr3R 6133229 6133249 4 100 4.5 8.0 6.2 0.6 118 chr3R 6133131 intergenic not near genes chr3R 6133190 intergenic not near genes chr3R 6133249 intergenic not near genes chr3R_4_6130001 chr3R_6130001 RAL-502 1968 chr3R 6133145 6133163 chr3R 6133228 6133245 8 97 4.0 8.0 6.0 1.1 100 chr3R 6133145 intergenic not near genes chr3R 6133195 intergenic not near genes chr3R 6133245 intergenic not near genes chr3R_8_6130001 chr3R_6130001 RAL-502 1969 chr3R 6141934 6141952 chr3R 6141992 6141994 7 79 3.5 6.5 5.0 1.2 60 chr3R 6141934 intergenic not near genes chr3R 6141964 intergenic not near genes chr3R 6141994 intergenic not near genes chr3R_7_6140001 chr3R_6140001 RAL-502 1970 chr3R 6158488 6158533 chr3R 6167091 6167135 Tirant 9 8602 6.0 4.5 5.2 1.5 8647 chr3R 6158488 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167135 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-502 1971 chr3R 6175152 6175206 chr3R 6182444 6182496 HMS-Beagle2 14 7286 2.0 3.0 2.5 4.0 7344 chr3R 6175152 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182496 intergenic CR45194 + chr3R_14_6175001 chr3R_6175001 RAL-502 1972 chr3R 6206279 6206297 chr3R 6206515 6206528 BS 8 232 6.0 6.5 6.2 1.1 249 chr3R 6206279 exon Osi24 + chr3R 6206404 intron Osi24 + chr3R 6206528 intron Osi24 + chr3R_8_6205001 chr3R_6205001 RAL-502 1973 chr3R 6206306 6206320 chr3R 6206496 6206535 BS 5 206 3.5 4.0 3.8 1.0 229 chr3R 6206306 exon Osi24 + chr3R 6206420 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_5_6205001 chr3R_6205001 RAL-502 1974 chr3R 6461558 6461604 chr3R 6461659 6461700 9 100 3.0 0.0 1.5 3.6 142 chr3R 6461558 intergenic not near genes chr3R 6461629 intergenic not near genes chr3R 6461700 intergenic not near genes chr3R_9_6460001 chr3R_6460001 RAL-502 1975 chr3R 6510015 6510049 chr3R 6515116 6515133 jockey 9 5097 4.5 5.0 4.8 1.6 5118 chr3R 6510015 intergenic not near genes chr3R 6512574 intergenic not near genes chr3R 6515133 intergenic not near genes chr3R_9_6510001 chr3R_6510001 RAL-502 1976 chr3R 6515201 6515250 chr3R 6515311 6515359 10 109 3.0 0.0 1.5 4.0 158 chr3R 6515201 intergenic not near genes chr3R 6515280 intergenic not near genes chr3R 6515359 intergenic not near genes chr3R_10_6515001 chr3R_6515001 RAL-502 1977 chr3R 6516104 6516152 chr3R 6516205 6516251 14 100 4.5 5.0 4.8 2.4 147 chr3R 6516104 intergenic not near genes chr3R 6516178 intergenic not near genes chr3R 6516251 intergenic not near genes chr3R_14_6515001 chr3R_6515001 RAL-502 1978 chr3R 6550307 6550352 chr3R 6550408 6550434 10 98 3.0 6.5 4.8 1.7 127 chr3R 6550307 intron dpr11 - chr3R 6550370 intron dpr11 - chr3R 6550434 intron dpr11 - chr3R_10_6550001 chr3R_6550001 RAL-502 1979 chr3R 6561933 6561977 chr3R 6562037 6562037 10 99 2.5 5.5 4.0 2.0 104 chr3R 6561933 intron dpr11 - chr3R 6561985 intron dpr11 - chr3R 6562037 intron dpr11 - chr3R_10_6560001 chr3R_6560001 RAL-502 1980 chr3R 6568045 6568059 chr3R 6568119 6568162 4 96 2.0 3.0 2.5 1.1 117 chr3R 6568045 intron dpr11 - chr3R 6568104 intron dpr11 - chr3R 6568162 intron dpr11 - chr3R_4_6565001 chr3R_6565001 RAL-502 1981 chr3R 6571707 6571757 chr3R 6571812 6571842 15 92 1.5 5.0 3.2 3.6 135 chr3R 6571707 intron dpr11 - chr3R 6571774 intron dpr11 - chr3R 6571842 intron dpr11 - chr3R_15_6570001 chr3R_6570001 RAL-502 1982 chr3R 6589889 6589929 chr3R 6589984 6590031 13 97 2.5 2.5 2.5 3.7 142 chr3R 6589889 intron dpr11 - chr3R 6589960 intron dpr11 - chr3R 6590031 intron dpr11 - chr3R_13_6585001 chr3R_6585001 RAL-502 1983 chr3R 6624254 6624274 chr3R 6624354 6624367 4 99 2.5 2.0 2.2 1.2 113 chr3R 6624254 intergenic not near genes chr3R 6624310 intergenic not near genes chr3R 6624367 intergenic not near genes chr3R_4_6620001 chr3R_6620001 RAL-502 1984 chr3R 6639889 6639920 chr3R 6639987 6640017 13 94 6.5 0.0 3.2 3.1 128 chr3R 6639889 intergenic not near genes chr3R 6639953 intergenic not near genes chr3R 6640017 intergenic not near genes chr3R_13_6635001 chr3R_6635001 RAL-502 1985 chr3R 6643472 6643479 chr3R 6643637 6643649 7 166 30.0 40.0 35.0 0.2 177 chr3R 6643472 intron CG1315 - chr3R 6643560 intron CG1315 - chr3R 6643649 intron CG1315 - chr3R_7_6640001 chr3R_6640001 RAL-502 1986 chr3R 6643471 6643521 chr3R 6643650 6643686 11 167 41.0 36.0 38.5 0.3 215 chr3R 6643471 intron CG1315 - chr3R 6643578 intron CG1315 - chr3R 6643686 intron CG1315 - chr3R_11_6640001 chr3R_6640001 RAL-502 1987 chr3R 6655755 6655791 chr3R 6656038 6656082 17 289 4.5 4.5 4.5 3.1 327 chr3R 6655755 exon Taf1 + chr3R 6655918 3` UTR Taf1 + chr3R 6656082 intergenic Taf1 +,CG1307 - chr3R_17_6655001 chr3R_6655001 RAL-502 1988 chr3R 6689317 6689365 chr3R 6689419 6689467 9 99 5.5 2.0 3.8 1.9 150 chr3R 6689317 intergenic Ccp84Af - chr3R 6689392 intergenic Ccp84Af - chr3R 6689467 intergenic Ccp84Af - chr3R_9_6685001 chr3R_6685001 RAL-502 1989 chr3R 6690679 6690710 chr3R 6690784 6690815 11 105 3.0 4.5 3.8 2.3 136 chr3R 6690679 intergenic Ccp84Ae -,Ccp84Af - chr3R 6690747 intergenic Ccp84Ae - chr3R 6690815 intergenic Ccp84Ae - chr3R_11_6690001 chr3R_6690001 RAL-502 1990 chr3R 6697298 6697311 chr3R 6697397 6697417 5 104 7.0 8.0 7.5 0.6 119 chr3R 6697298 intergenic not near genes chr3R 6697358 intergenic not near genes chr3R 6697417 intergenic not near genes chr3R_5_6695001 chr3R_6695001 RAL-502 1991 chr3R 6705669 6705721 chr3R 6705913 6705965 9 243 0.5 3.0 1.8 3.2 296 chr3R 6705669 intergenic not near genes chr3R 6705817 intergenic not near genes chr3R 6705965 intergenic not near genes chr3R_9_6705001 chr3R_6705001 RAL-502 1992 chr3R 6737491 6737525 chr3R 6739285 6739328 Doc 7 1796 3.5 1.0 2.2 2.2 1837 chr3R 6737491 intron pb - chr3R 6738410 intron pb - chr3R 6739328 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-502 1993 chr3R 6784124 6784177 chr3R 6784308 6784363 12 181 5.0 5.5 5.2 1.9 239 chr3R 6784124 intergenic not near genes chr3R 6784244 intergenic not near genes chr3R 6784363 intergenic not near genes chr3R_12_6780001 chr3R_6780001 RAL-502 1994 chr3R 6828006 6828036 chr3R 6828102 6828132 10 95 3.0 6.0 4.5 1.8 126 chr3R 6828006 intron Scr - chr3R 6828069 intron Scr - chr3R 6828132 intron Scr - chr3R_10_6825001 chr3R_6825001 RAL-502 1995 chr3R 6842757 6842806 chr3R 6842860 6842907 10 100 2.5 1.5 2.0 3.3 150 chr3R 6842757 intron Scr - chr3R 6842832 intron Scr - chr3R 6842907 intron Scr - chr3R_10_6840001 chr3R_6840001 RAL-502 1996 chr3R 6856364 6856393 chr3R 6856501 6856530 8 136 1.0 1.5 1.2 3.6 166 chr3R 6856364 intergenic not near genes chr3R 6856447 intergenic not near genes chr3R 6856530 intergenic not near genes chr3R_8_6855001 chr3R_6855001 RAL-502 1997 chr3R 6918051 6918093 chr3R 6918149 6918190 8 95 0.5 7.0 3.8 1.7 139 chr3R 6918051 intron Antp - chr3R 6918120 intron Antp - chr3R 6918190 intron Antp - chr3R_8_6915001 chr3R_6915001 RAL-502 1998 chr3R 6923564 6923595 chr3R 6923669 6923702 12 104 3.0 2.5 2.8 3.2 138 chr3R 6923564 intron Antp - chr3R 6923633 intron Antp - chr3R 6923702 intron Antp - chr3R_12_6920001 chr3R_6920001 RAL-502 1999 chr3R 6978869 6978905 chr3R 6978974 6979010 7 103 2.5 4.0 3.2 1.7 141 chr3R 6978869 intron Antp - chr3R 6978940 intron Antp - chr3R 6979010 intron Antp - chr3R_7_6975001 chr3R_6975001 RAL-502 2000 chr3R 7030684 7030725 chr3R 7030780 7030821 16 94 1.0 1.5 1.2 7.3 137 chr3R 7030684 intergenic not near genes chr3R 7030752 intergenic not near genes chr3R 7030821 intergenic not near genes chr3R_16_7030001 chr3R_7030001 RAL-502 2001 chr3R 7049537 7049572 chr3R 7049641 7049675 9 103 4.0 5.5 4.8 1.6 138 chr3R 7049537 intergenic not near genes chr3R 7049606 intergenic not near genes chr3R 7049675 intergenic not near genes chr3R_9_7045001 chr3R_7045001 RAL-502 2002 chr3R 7060239 7060283 chr3R 7060340 7060381 18 97 5.5 6.0 5.8 2.6 142 chr3R 7060239 3` UTR dj + chr3R 7060310 3` UTR dj + chr3R 7060381 3` UTR dj + chr3R_18_7060001 chr3R_7060001 RAL-502 2003 chr3R 7076421 7076469 chr3R 7076530 7076571 11 106 4.0 8.0 6.0 1.6 150 chr3R 7076421 intron CG1943 + chr3R 7076496 intron CG1943 + chr3R 7076571 intron CG1943 + chr3R_11_7075001 chr3R_7075001 RAL-502 2004 chr3R 7103267 7103287 chr3R 7103363 7103378 5 94 6.0 7.5 6.8 0.6 111 chr3R 7103267 intron Alh - chr3R 7103322 intron Alh - chr3R 7103378 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-502 2005 chr3R 7103288 7103309 chr3R 7103359 7103399 7 88 3.5 6.0 4.8 1.2 111 chr3R 7103288 intron Alh - chr3R 7103344 intron Alh - chr3R 7103399 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-502 2006 chr3R 7103912 7103927 chr3R 7104031 7104040 8 117 11.0 7.0 9.0 0.8 128 chr3R 7103912 intron Alh - chr3R 7103976 intron Alh - chr3R 7104040 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-502 2007 chr3R 7103928 7103958 chr3R 7104028 7104077 14 116 6.5 5.5 6.0 2.0 149 chr3R 7103928 intron Alh - chr3R 7104002 intron Alh - chr3R 7104077 intron Alh - chr3R_14_7100001 chr3R_7100001 RAL-502 2008 chr3R 7125083 7125124 chr3R 7125190 7125231 17 104 3.5 5.0 4.2 3.3 148 chr3R 7125083 intron CG10098 + chr3R 7125157 intron CG10098 + chr3R 7125231 intron CG10098 + chr3R_17_7125001 chr3R_7125001 RAL-502 2009 chr3R 7126487 7126532 chr3R 7126602 7126646 11 112 0.0 2.0 1.0 5.5 159 chr3R 7126487 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126646 3` UTR CG10068 - chr3R_11_7125001 chr3R_7125001 RAL-502 2010 chr3R 7173662 7173709 chr3R 7173761 7173809 6 100 1.0 3.5 2.2 1.9 147 chr3R 7173662 intron sas + chr3R 7173736 intron sas + chr3R 7173809 intron sas + chr3R_6_7170001 chr3R_7170001 RAL-502 2011 chr3R 7210575 7210618 chr3R 7210672 7210724 7 100 0.0 3.5 1.8 2.5 149 chr3R 7210575 intergenic not near genes chr3R 7210650 intergenic not near genes chr3R 7210724 intergenic not near genes chr3R_7_7210001 chr3R_7210001 RAL-502 2012 chr3R 7217453 7217483 chr3R 7217694 7217724 6 241 4.0 9.5 6.8 0.8 271 chr3R 7217453 intergenic CG14605 -,CG14606 - chr3R 7217588 intergenic CG14605 - chr3R 7217724 3` UTR CG14605 - chr3R_6_7215001 chr3R_7215001 RAL-502 2013 chr3R 7226901 7226911 chr3R 7226988 7227010 5 99 8.0 6.5 7.2 0.6 109 chr3R 7226901 intron CG14608 + chr3R 7226956 intron CG14608 + chr3R 7227010 intron CG14608 + chr3R_5_7225001 chr3R_7225001 RAL-502 2014 chr3R 7269903 7269929 chr3R 7270017 7270043 8 113 4.0 4.5 4.2 1.5 140 chr3R 7269903 3` UTR Syt4 + chr3R 7269973 3` UTR Syt4 + chr3R 7270043 3` UTR Syt4 + chr3R_8_7265001 chr3R_7265001 RAL-502 2015 chr3R 7328849 7328902 chr3R 7328952 7329005 16 100 4.5 2.5 3.5 3.6 156 chr3R 7328849 intergenic not near genes chr3R 7328927 intergenic not near genes chr3R 7329005 intergenic not near genes chr3R_16_7325001 chr3R_7325001 RAL-502 2016 chr3R 7476270 7476306 chr3R 7476368 7476404 8 96 3.0 4.0 3.5 1.8 134 chr3R 7476270 intergenic not near genes chr3R 7476337 intergenic not near genes chr3R 7476404 intergenic not near genes chr3R_8_7475001 chr3R_7475001 RAL-502 2017 chr3R 7639766 7639820 chr3R 7639927 7639937 14 157 3.0 3.5 3.2 3.3 171 chr3R 7639766 intergenic CG34127 - chr3R 7639852 intergenic CG34127 - chr3R 7639937 intergenic not near genes chr3R_14_7635001 chr3R_7635001 RAL-502 2018 chr3R 7660762 7660816 chr3R 7660873 7660878 12 95 3.5 4.0 3.8 2.5 116 chr3R 7660762 intron Nlg1 + chr3R 7660820 intron Nlg1 + chr3R 7660878 intron Nlg1 + chr3R_12_7660001 chr3R_7660001 RAL-502 2019 chr3R 7694565 7694606 chr3R 7713646 7713687 invader3 5 19081 2.0 2.5 2.2 1.6 19122 chr3R 7694565 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713687 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-502 2020 chr3R 7729445 7729499 chr3R 7737403 7737445 Stalker2 11 7956 5.0 5.0 5.0 1.8 8000 chr3R 7729445 intergenic not near genes chr3R 7733445 intergenic not near genes chr3R 7737445 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-502 2021 chr3R 7809922 7809948 chr3R 7810000 7810047 9 89 3.0 5.0 4.0 1.8 125 chr3R 7809922 5` UTR CG2993 - chr3R 7809984 5` UTR CG2993 - chr3R 7810047 intergenic CG2993 -,CG31472 + chr3R_9_7805001 chr3R_7805001 RAL-502 2022 chr3R 7965292 7965334 chr3R 7965400 7965442 8 106 2.5 2.5 2.5 2.3 150 chr3R 7965292 intron dsx - chr3R 7965367 intron dsx - chr3R 7965442 intron dsx - chr3R_8_7965001 chr3R_7965001 RAL-502 2023 chr3R 7973297 7973333 chr3R 7974379 7974417 1360 4 1084 5.0 4.5 4.8 0.7 1120 chr3R 7973297 intergenic not near genes chr3R 7973857 intergenic not near genes chr3R 7974417 3` UTR CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-502 2024 chr3R 8081129 8081177 chr3R 8081227 8081274 15 96 7.0 1.5 4.2 2.9 145 chr3R 8081129 intron mAChR-B + chr3R 8081202 intron mAChR-B + chr3R 8081274 intron mAChR-B + chr3R_15_8080001 chr3R_8080001 RAL-502 2025 chr3R 8090256 8090298 chr3R 8090448 8090494 20 195 3.5 4.0 3.8 4.2 238 chr3R 8090256 5` UTR CR44330 + chr3R 8090375 intergenic CR44330 + chr3R 8090494 intergenic CR44330 + chr3R_20_8090001 chr3R_8090001 RAL-502 2026 chr3R 8090545 8090570 chr3R 8094042 8094061 297 10 3495 6.5 8.0 7.2 1.2 3516 chr3R 8090545 intergenic CR44330 + chr3R 8092303 intergenic not near genes chr3R 8094061 intergenic CG7900 + chr3R_10_8090001 chr3R_8090001 RAL-502 2027 chr3R 8094403 8094435 chr3R 8099728 8099759 Transpac 10 5324 5.0 7.0 6.0 1.4 5356 chr3R 8094403 intron CG7900 + chr3R 8097081 intron CG7900 + chr3R 8099759 intron CG7900 + chr3R_10_8095001 chr3R_8095001 RAL-502 2028 chr3R 8101742 8101759 chr3R 8104846 8104862 G2 6 3103 6.0 4.5 5.2 1.0 3120 chr3R 8101742 exon CG7900 + chr3R 8103302 intron CG7900 + chr3R 8104862 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-502 2029 chr3R 8182643 8182651 chr3R 8182748 8182764 4 111 4.5 3.5 4.0 0.8 121 chr3R 8182643 intergenic not near genes chr3R 8182704 intergenic not near genes chr3R 8182764 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-502 2030 chr3R 8182652 8182684 chr3R 8182745 8182796 14 107 1.5 3.0 2.2 4.4 144 chr3R 8182652 intergenic not near genes chr3R 8182724 intergenic not near genes chr3R 8182796 intergenic not near genes chr3R_14_8180001 chr3R_8180001 RAL-502 2031 chr3R 8188364 8188520 chr3R 8188468 8188631 20 106 0.0 0.0 0.0 20.0 267 chr3R 8188364 intergenic not near genes chr3R 8188498 intergenic not near genes chr3R 8188631 intergenic not near genes chr3R_20_8185001 chr3R_8185001 RAL-502 2032 chr3R 8316716 8316717 chr3R 8319846 8319869 6 3127 17.0 16.5 16.8 0.3 3153 chr3R 8316716 intergenic Coq2 -,CR45215 + chr3R 8318292 intron Ctr1B + chr3R 8319869 exon Poxm - chr3R_6_8315001 chr3R_8315001 RAL-502 2033 chr3R 8339246 8339246 chr3R 21907535 21907535 4 13568289 17.0 25.0 21.0 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-502 2034 chr3R 8339247 8339247 chr3R 21907534 21907536 9 13568289 17.5 25.0 21.2 0.4 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-502 2035 chr3R 8393561 8393602 chr3R 8393664 8393680 12 95 2.0 4.0 3.0 3.0 119 chr3R 8393561 intron CG45263 - chr3R 8393620 intron CG45263 - chr3R 8393680 intron CG45263 - chr3R_12_8390001 chr3R_8390001 RAL-502 2036 chr3R 8402995 8403037 chr3R 8412181 8412212 roo 15 9177 4.5 3.5 4.0 3.0 9217 chr3R 8402995 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412212 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-502 2037 chr3R 8418661 8418694 chr3R 8418783 8418795 6 119 9.5 3.0 6.2 0.8 134 chr3R 8418661 intron CG45263 - chr3R 8418728 intron CG45263 - chr3R 8418795 intron CG45263 - chr3R_6_8415001 chr3R_8415001 RAL-502 2038 chr3R 8439490 8439534 chr3R 8439585 8439595 6 78 5.0 2.5 3.8 1.2 105 chr3R 8439490 intron CG45263 - chr3R 8439542 intron CG45263 - chr3R 8439595 intron CG45263 - chr3R_6_8435001 chr3R_8435001 RAL-502 2039 chr3R 8450509 8450532 chr3R 8450772 8450799 7 264 3.5 5.5 4.5 1.3 290 chr3R 8450509 intron CG45263 - chr3R 8450654 intron CG45263 - chr3R 8450799 intron CG45263 - chr3R_7_8450001 chr3R_8450001 RAL-502 2040 chr3R 8478080 8478108 chr3R 8478163 8478208 7 93 2.5 4.5 3.5 1.6 128 chr3R 8478080 intergenic CG45263 - chr3R 8478144 intergenic not near genes chr3R 8478208 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-502 2041 chr3R 8570462 8570474 chr3R 8575118 8575130 HMS-Beagle 6 4656 17.0 9.5 13.2 0.4 4668 chr3R 8570462 intergenic not near genes chr3R 8572796 intergenic not near genes chr3R 8575130 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-502 2042 chr3R 8570476 8570510 chr3R 8575112 8575162 HMS-Beagle 18 4651 3.5 6.0 4.8 3.1 4686 chr3R 8570476 intergenic not near genes chr3R 8572819 intergenic not near genes chr3R 8575162 intergenic not near genes chr3R_18_8570001 chr3R_8570001 RAL-502 2043 chr3R 8601756 8601798 chr3R 8610929 8610962 roo 14 9168 3.5 7.0 5.2 2.3 9206 chr3R 8601756 intron 5-HT2B + chr3R 8606359 intron 5-HT2B + chr3R 8610962 intron 5-HT2B + chr3R_14_8605001 chr3R_8605001 RAL-502 2044 chr3R 8612065 8612109 chr3R 8612164 8612208 13 95 2.5 5.5 4.0 2.6 143 chr3R 8612065 intron 5-HT2B + chr3R 8612136 intron 5-HT2B + chr3R 8612208 intron 5-HT2B + chr3R_13_8610001 chr3R_8610001 RAL-502 2045 chr3R 8621522 8621546 chr3R 8621619 8621623 7 91 7.5 6.0 6.8 0.9 101 chr3R 8621522 intron 5-HT2B + chr3R 8621572 intron 5-HT2B + chr3R 8621623 intron 5-HT2B + chr3R_7_8620001 chr3R_8620001 RAL-502 2046 chr3R 8642409 8642430 chr3R 8642505 8642508 7 91 5.5 4.5 5.0 1.2 99 chr3R 8642409 intergenic not near genes chr3R 8642458 intergenic not near genes chr3R 8642508 intergenic not near genes chr3R_7_8640001 chr3R_8640001 RAL-502 2047 chr3R 8642434 8642441 chr3R 8642492 8642537 6 84 2.0 3.5 2.8 1.6 103 chr3R 8642434 intergenic not near genes chr3R 8642486 intergenic not near genes chr3R 8642537 intergenic not near genes chr3R_6_8640001 chr3R_8640001 RAL-502 2048 chr3R 8685275 8685315 chr3R 8685395 8685435 9 120 1.5 1.0 1.2 4.1 160 chr3R 8685275 intron CR44937 - chr3R 8685355 intron CR44937 - chr3R 8685435 intron CR44937 - chr3R_9_8685001 chr3R_8685001 RAL-502 2049 chr3R 8707357 8707363 chr3R 8709801 8709824 jockey 5 2453 5.5 5.0 5.2 0.8 2467 chr3R 8707357 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709824 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-502 2050 chr3R 8707366 8707381 chr3R 8709788 8709839 jockey 7 2454 4.0 3.0 3.5 1.6 2473 chr3R 8707366 intergenic not near genes chr3R 8708602 intergenic not near genes chr3R 8709839 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-502 2051 chr3R 8745729 8745780 chr3R 8745860 8745904 23 129 1.5 4.5 3.0 5.8 175 chr3R 8745729 intron CG9801 - chr3R 8745816 intron CG9801 - chr3R 8745904 intron CG9801 - chr3R_23_8745001 chr3R_8745001 RAL-502 2052 chr3R 8882052 8882088 chr3R 8882163 8882199 16 110 2.0 5.5 3.8 3.3 147 chr3R 8882052 intron pyd - chr3R 8882126 intron pyd - chr3R 8882199 intron pyd - chr3R_16_8880001 chr3R_8880001 RAL-502 2053 chr3R 8894869 8894903 chr3R 8896044 8896079 1360 12 1174 4.0 3.0 3.5 2.7 1210 chr3R 8894869 intron pyd - chr3R 8895474 intron pyd - chr3R 8896079 intron pyd - chr3R_12_8895001 chr3R_8895001 RAL-502 2054 chr3R 8994968 8995019 chr3R 9002578 9002630 9 7613 17.5 33.0 25.2 0.3 7662 chr3R 8994968 3` UTR CG11975 + chr3R 8998799 intron CG31100 - chr3R 9002630 intron CG31100 - chr3R_9_8995001 chr3R_8995001 RAL-502 2055 chr3R 9036364 9036405 chr3R 9036462 9036503 15 98 2.5 1.0 1.8 5.4 139 chr3R 9036364 intron neur - chr3R 9036434 intron neur - chr3R 9036503 intron neur - chr3R_15_9035001 chr3R_9035001 RAL-502 2056 chr3R 9056973 9057018 chr3R 9057096 9057142 20 121 3.5 5.5 4.5 3.6 169 chr3R 9056973 intron Kdm2 + chr3R 9057058 intron Kdm2 + chr3R 9057142 intron Kdm2 + chr3R_20_9055001 chr3R_9055001 RAL-502 2057 chr3R 9082022 9082072 chr3R 9082136 9082186 10 104 5.0 2.5 3.8 2.1 164 chr3R 9082022 intron pum - chr3R 9082104 intron pum - chr3R 9082186 intron pum - chr3R_10_9080001 chr3R_9080001 RAL-502 2058 chr3R 9095679 9095725 chr3R 9096016 9096065 15 337 5.0 5.0 5.0 2.5 386 chr3R 9095679 intron pum - chr3R 9095872 intron pum - chr3R 9096065 intron pum - chr3R_15_9095001 chr3R_9095001 RAL-502 2059 chr3R 9108846 9108884 chr3R 9108942 9108980 13 95 6.5 2.5 4.5 2.4 134 chr3R 9108846 intron pum - chr3R 9108913 intron pum - chr3R 9108980 intron pum - chr3R_13_9105001 chr3R_9105001 RAL-502 2060 chr3R 9141144 9141187 chr3R 9141251 9141284 19 107 2.0 6.5 4.2 3.7 140 chr3R 9141144 intron pum - chr3R 9141214 intron pum - chr3R 9141284 intron pum - chr3R_19_9140001 chr3R_9140001 RAL-502 2061 chr3R 9167733 9167746 chr3R 9168072 9168085 5 339 8.0 6.5 7.2 0.6 352 chr3R 9167733 intron pum - chr3R 9167909 intron pum - chr3R 9168085 intron pum - chr3R_5_9165001 chr3R_9165001 RAL-502 2062 chr3R 9167749 9167773 chr3R 9168071 9168112 12 331 2.5 6.0 4.2 2.3 363 chr3R 9167749 intron pum - chr3R 9167930 intron pum - chr3R 9168112 intron pum - chr3R_12_9165001 chr3R_9165001 RAL-502 2063 chr3R 9204243 9204273 chr3R 9204335 9204366 5 95 9.5 5.0 7.2 0.6 123 chr3R 9204243 intron pum - chr3R 9204304 intron pum - chr3R 9204366 intron pum - chr3R_5_9200001 chr3R_9200001 RAL-502 2064 chr3R 9278774 9278805 chr3R 9284054 9284079 Rt1a 14 5279 3.5 6.0 4.8 2.4 5305 chr3R 9278774 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284079 intergenic not near genes chr3R_14_9280001 chr3R_9280001 RAL-502 2065 chr3R 9298214 9298256 chr3R 9298322 9298352 11 105 6.0 3.0 4.5 2.0 138 chr3R 9298214 intron CG8861 - chr3R 9298283 intron CG8861 - chr3R 9298352 intron CG8861 - chr3R_11_9295001 chr3R_9295001 RAL-502 2066 chr3R 9319557 9319603 chr3R 9320012 9320044 jockey 15 452 5.0 4.0 4.5 2.7 487 chr3R 9319557 intron CG8861 - chr3R 9319800 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_15_9315001 chr3R_9315001 RAL-502 2067 chr3R 9601450 9601491 chr3R 9601588 9601626 12 135 3.5 5.0 4.2 2.3 176 chr3R 9601450 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601626 intron CG8312 + chr3R_12_9600001 chr3R_9600001 RAL-502 2068 chr3R 9647983 9648028 chr3R 9648427 9648472 5 443 3.5 4.5 4.0 1.0 489 chr3R 9647983 intron Dh44 + chr3R 9648228 intron Dh44 + chr3R 9648472 intron Dh44 + chr3R_5_9645001 chr3R_9645001 RAL-502 2069 chr3R 9663622 9663656 chr3R 9663750 9663771 18 133 2.0 5.0 3.5 4.0 149 chr3R 9663622 intron CG9492 - chr3R 9663696 intron CG9492 - chr3R 9663771 intron CG9492 - chr3R_18_9660001 chr3R_9660001 RAL-502 2070 chr3R 9702242 9702290 chr3R 9702338 9702386 14 91 4.0 5.0 4.5 2.5 144 chr3R 9702242 intron Unc-115a - chr3R 9702314 intron Unc-115a - chr3R 9702386 intron Unc-115a - chr3R_14_9700001 chr3R_9700001 RAL-502 2071 chr3R 9815444 9815485 chr3R 9815896 9815937 14 447 2.0 0.5 1.2 6.4 493 chr3R 9815444 intergenic eloF +,CG16904 - chr3R 9815690 intergenic CG16904 - chr3R 9815937 3` UTR CG16904 - chr3R_14_9815001 chr3R_9815001 RAL-502 2072 chr3R 9857807 9857815 chr3R 9858251 9858275 6 455 7.5 6.0 6.8 0.8 468 chr3R 9857807 intron Teh1 - chr3R 9858041 intron Teh1 - chr3R 9858275 intron Teh1 - chr3R_6_9855001 chr3R_9855001 RAL-502 2073 chr3R 9857822 9857837 chr3R 9858248 9858297 11 454 3.5 6.0 4.8 1.9 475 chr3R 9857822 intron Teh1 - chr3R 9858060 intron Teh1 - chr3R 9858297 intron Teh1 - chr3R_11_9855001 chr3R_9855001 RAL-502 2074 chr3R 9936859 9936908 chr3R 9936954 9936996 10 94 5.5 2.0 3.8 2.1 137 chr3R 9936859 intron Glut4EF + chr3R 9936928 intron Glut4EF + chr3R 9936996 intron Glut4EF + chr3R_10_9935001 chr3R_9935001 RAL-502 2075 chr3R 10231774 10231813 chr3R 10237371 10237410 mdg3 6 5597 3.0 7.5 5.2 1.0 5636 chr3R 10231774 intron CG42795 + chr3R 10234592 intron CG42795 + chr3R 10237410 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-502 2076 chr3R 10255370 10255386 chr3R 10260827 10260845 I-element 6 5458 7.0 5.0 6.0 0.9 5475 chr3R 10255370 3` UTR Sirt6 - chr3R 10258108 intron Sirt6 - chr3R 10260845 exon Sirt6 - chr3R_6_10255001 chr3R_10255001 RAL-502 2077 chr3R 10306954 10306988 chr3R 10312196 10312246 17 5243 33.5 22.0 27.8 0.6 5292 chr3R 10306954 exon CG43143 + chr3R 10309600 exon CG6293 - chr3R 10312246 3` UTR Bruce - chr3R_17_10305001 chr3R_10305001 RAL-502 2078 chr3R 10394054 10394097 chr3R 10394173 10394214 10 116 5.0 5.5 5.2 1.6 160 chr3R 10394054 intron cwo + chr3R 10394134 intron cwo + chr3R 10394214 intron cwo + chr3R_10_10390001 chr3R_10390001 RAL-502 2079 chr3R 10427405 10427430 chr3R 10427533 10427560 5 130 7.0 0.0 3.5 1.1 155 chr3R 10427405 intergenic not near genes chr3R 10427482 intergenic not near genes chr3R 10427560 intergenic not near genes chr3R_5_10425001 chr3R_10425001 RAL-502 2080 chr3R 10430655 10430702 chr3R 10430764 10430804 18 107 5.0 4.5 4.8 3.1 149 chr3R 10430655 intergenic not near genes chr3R 10430730 intergenic not near genes chr3R 10430804 intergenic not near genes chr3R_18_10430001 chr3R_10430001 RAL-502 2081 chr3R 10526294 10526310 chr3R 10526568 10526593 6 281 2.0 3.0 2.5 1.7 299 chr3R 10526294 intron hth - chr3R 10526444 intron hth - chr3R 10526593 intron hth - chr3R_6_10525001 chr3R_10525001 RAL-502 2082 chr3R 10651790 10651841 chr3R 10651909 10651947 6 113 5.5 3.5 4.5 1.1 157 chr3R 10651790 intergenic not near genes chr3R 10651868 intergenic not near genes chr3R 10651947 intergenic not near genes chr3R_6_10650001 chr3R_10650001 RAL-502 2083 chr3R 10723745 10723789 chr3R 10723857 10723896 15 111 3.0 0.0 1.5 6.0 151 chr3R 10723745 intergenic not near genes chr3R 10723820 intergenic not near genes chr3R 10723896 intergenic not near genes chr3R_15_10720001 chr3R_10720001 RAL-502 2084 chr3R 10727640 10727678 chr3R 10727724 10727777 9 90 2.5 5.0 3.8 1.9 137 chr3R 10727640 intergenic not near genes chr3R 10727708 intergenic not near genes chr3R 10727777 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-502 2085 chr3R 10732308 10732339 chr3R 10733200 10733223 6 888 3.0 6.5 4.8 1.0 915 chr3R 10732308 intergenic not near genes chr3R 10732766 intergenic not near genes chr3R 10733223 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-502 2086 chr3R 10904898 10904922 chr3R 10905121 10905140 8 223 4.5 4.0 4.2 1.5 242 chr3R 10904898 intergenic not near genes chr3R 10905019 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_8_10905001 chr3R_10905001 RAL-502 2087 chr3R 10906815 10906847 chr3R 10906910 10906938 12 93 2.5 2.0 2.2 3.8 123 chr3R 10906815 intergenic not near genes chr3R 10906876 intergenic not near genes chr3R 10906938 intergenic not near genes chr3R_12_10905001 chr3R_10905001 RAL-502 2088 chr3R 10919670 10919716 chr3R 10919763 10919814 18 95 5.5 4.5 5.0 3.0 144 chr3R 10919670 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919814 intergenic not near genes chr3R_18_10915001 chr3R_10915001 RAL-502 2089 chr3R 10920027 10920076 chr3R 10920125 10920174 16 97 1.0 4.5 2.8 4.2 147 chr3R 10920027 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920174 intergenic not near genes chr3R_16_10920001 chr3R_10920001 RAL-502 2090 chr3R 10971480 10971504 chr3R 10971569 10971615 9 104 12.0 5.0 8.5 0.9 135 chr3R 10971480 intergenic not near genes chr3R 10971548 intergenic not near genes chr3R 10971615 intergenic not near genes chr3R_9_10970001 chr3R_10970001 RAL-502 2091 chr3R 11043075 11043123 chr3R 11043200 11043217 7 120 3.5 1.5 2.5 2.0 142 chr3R 11043075 intron CG34114 + chr3R 11043146 intron CG34114 + chr3R 11043217 intron CG34114 + chr3R_7_11040001 chr3R_11040001 RAL-502 2092 chr3R 11056882 11056899 chr3R 11056980 11056992 4 97 6.5 0.0 3.2 1.0 110 chr3R 11056882 intergenic not near genes chr3R 11056937 intergenic not near genes chr3R 11056992 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-502 2093 chr3R 11087421 11087461 chr3R 11087517 11087539 6 89 1.5 3.5 2.5 1.7 118 chr3R 11087421 intergenic not near genes chr3R 11087480 intergenic not near genes chr3R 11087539 intergenic not near genes chr3R_6_11085001 chr3R_11085001 RAL-502 2094 chr3R 11099638 11099686 chr3R 11099788 11099838 10 149 4.0 3.0 3.5 2.2 200 chr3R 11099638 intergenic not near genes chr3R 11099738 intergenic not near genes chr3R 11099838 intergenic not near genes chr3R_10_11095001 chr3R_11095001 RAL-502 2095 chr3R 11102305 11102350 chr3R 11102404 11102428 7 91 8.0 4.0 6.0 1.0 123 chr3R 11102305 intergenic not near genes chr3R 11102366 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-502 2096 chr3R 11103153 11103164 chr3R 11103254 11103266 5 101 0.0 0.0 0.0 5.0 113 chr3R 11103153 intergenic not near genes chr3R 11103210 intergenic not near genes chr3R 11103266 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-502 2097 chr3R 11151124 11151131 chr3R 11151327 11151331 6 209 5.5 8.0 6.8 0.8 207 chr3R 11151124 3` UTR Ugt86Di - chr3R 11151228 3` UTR Ugt86Di - chr3R 11151331 3` UTR Ugt86Di - chr3R_6_11150001 chr3R_11150001 RAL-502 2098 chr3R 11151134 11151153 chr3R 11151318 11151358 4 196 4.0 7.5 5.8 0.6 224 chr3R 11151134 3` UTR Ugt86Di - chr3R 11151246 3` UTR Ugt86Di - chr3R 11151358 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-502 2099 chr3R 11197962 11198016 chr3R 11198081 11198135 9 119 3.0 2.5 2.8 2.4 173 chr3R 11197962 intron cu + chr3R 11198048 intron cu + chr3R 11198135 intron cu + chr3R_9_11195001 chr3R_11195001 RAL-502 2100 chr3R 11220267 11220308 chr3R 11220406 11220447 11 139 3.5 3.5 3.5 2.4 180 chr3R 11220267 3` UTR CG6693 - chr3R 11220357 3` UTR CG6693 - chr3R 11220447 3` UTR CG6693 - chr3R_11_11220001 chr3R_11220001 RAL-502 2101 chr3R 11342540 11342574 chr3R 11342636 11342670 9 93 4.5 8.0 6.2 1.2 130 chr3R 11342540 intron pros + chr3R 11342605 intron pros + chr3R 11342670 intron pros + chr3R_9_11340001 chr3R_11340001 RAL-502 2102 chr3R 11379217 11379256 chr3R 11388392 11388431 roo 13 9174 8.5 4.0 6.2 1.8 9214 chr3R 11379217 intron pros + chr3R 11383824 intron pros + chr3R 11388431 intron pros + chr3R_13_11380001 chr3R_11380001 RAL-502 2103 chr3R 11404932 11404957 chr3R 11405024 11405057 10 98 6.5 8.5 7.5 1.2 125 chr3R 11404932 3` UTR pros + chr3R 11404994 3` UTR pros + chr3R 11405057 3` UTR pros + chr3R_10_11400001 chr3R_11400001 RAL-502 2104 chr3R 11442327 11442367 chr3R 11442523 11442553 6 186 5.0 5.5 5.2 1.0 226 chr3R 11442327 intron,intron sals -,CG17230 + chr3R 11442440 intron,intron sals -,CG17230 + chr3R 11442553 intron,intron sals -,CG17230 + chr3R_6_11440001 chr3R_11440001 RAL-502 2105 chr3R 11518799 11518844 chr3R 11518910 11518922 17 108 4.0 3.0 3.5 3.8 123 chr3R 11518799 intergenic not near genes chr3R 11518860 intergenic not near genes chr3R 11518922 intergenic not near genes chr3R_17_11515001 chr3R_11515001 RAL-502 2106 chr3R 11664775 11664784 chr3R 11664887 11664896 6 112 5.0 3.5 4.2 1.2 121 chr3R 11664775 intron CG42327 + chr3R 11664836 intron CG42327 + chr3R 11664896 intron CG42327 + chr3R_6_11660001 chr3R_11660001 RAL-502 2107 chr3R 11664789 11664820 chr3R 11664884 11664912 12 104 3.5 3.5 3.5 2.7 123 chr3R 11664789 intron CG42327 + chr3R 11664850 intron CG42327 + chr3R 11664912 intron CG42327 + chr3R_12_11660001 chr3R_11660001 RAL-502 2108 chr3R 11694709 11694747 chr3R 11694822 11694859 13 113 5.0 5.0 5.0 2.2 150 chr3R 11694709 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694859 intergenic not near genes chr3R_13_11690001 chr3R_11690001 RAL-502 2109 chr3R 11734150 11734189 chr3R 11734285 11734328 7 135 3.5 4.0 3.8 1.5 178 chr3R 11734150 intergenic not near genes chr3R 11734239 intergenic not near genes chr3R 11734328 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-502 2110 chr3R 11740434 11740486 chr3R 11743521 11743573 49 3089 68.0 57.0 62.5 0.8 3139 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743573 exon CG14722 + chr3R_49_11740001 chr3R_11740001 RAL-502 2111 chr3R 11830335 11830360 chr3R 11830439 11830464 11 103 4.5 3.0 3.8 2.3 129 chr3R 11830335 intron CG6959 - chr3R 11830400 intron CG6959 - chr3R 11830464 intron CG6959 - chr3R_11_11830001 chr3R_11830001 RAL-502 2112 chr3R 11841057 11841078 chr3R 11846259 11846280 BS 6 5206 5.5 4.0 4.8 1.0 5223 chr3R 11841057 intron CG6959 - chr3R 11843668 intron CG6959 - chr3R 11846280 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-502 2113 chr3R 11841082 11841095 chr3R 11846250 11846289 BS 7 5189 3.5 3.0 3.2 1.7 5207 chr3R 11841082 intron CG6959 - chr3R 11843686 intron CG6959 - chr3R 11846289 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-502 2114 chr3R 11853415 11853469 chr3R 11853584 11853636 20 168 0.0 7.0 3.5 4.4 221 chr3R 11853415 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853636 intron CG6959 - chr3R_20_11850001 chr3R_11850001 RAL-502 2115 chr3R 11853752 11853801 chr3R 11853877 11853926 19 124 5.0 7.0 6.0 2.7 174 chr3R 11853752 intron CG6959 - chr3R 11853839 intron CG6959 - chr3R 11853926 intron CG6959 - chr3R_19_11850001 chr3R_11850001 RAL-502 2116 chr3R 11920973 11921002 chr3R 11921071 11921119 16 100 4.0 5.0 4.5 2.9 146 chr3R 11920973 intron Cad87A - chr3R 11921046 intron Cad87A - chr3R 11921119 intron Cad87A - chr3R_16_11920001 chr3R_11920001 RAL-502 2117 chr3R 11998945 11998960 chr3R 11999080 11999094 8 134 4.5 5.0 4.8 1.4 149 chr3R 11998945 intron Tk - chr3R 11999020 intron Tk - chr3R 11999094 intron Tk - chr3R_8_11995001 chr3R_11995001 RAL-502 2118 chr3R 12022865 12022910 chr3R 12025062 12025107 pogo 16 2196 5.0 7.0 6.0 2.3 2242 chr3R 12022865 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025107 intergenic not near genes chr3R_16_12020001 chr3R_12020001 RAL-502 2119 chr3R 12376382 12376415 chr3R 12376480 12376495 4 97 3.0 2.5 2.8 1.1 113 chr3R 12376382 exon GstD5 + chr3R 12376438 3` UTR GstD5 + chr3R 12376495 3` UTR GstD5 + chr3R_4_12375001 chr3R_12375001 RAL-502 2120 chr3R 12406490 12406518 chr3R 12406591 12406620 10 98 4.0 6.5 5.2 1.6 130 chr3R 12406490 intergenic CG5167 +,Cyp9f2 - chr3R 12406555 5` UTR CG5167 + chr3R 12406620 5` UTR CG5167 + chr3R_10_12405001 chr3R_12405001 RAL-502 2121 chr3R 12544688 12544736 chr3R 12544786 12544834 25 97 5.0 7.0 6.0 3.6 146 chr3R 12544688 intron Octbeta3R - chr3R 12544761 intron Octbeta3R - chr3R 12544834 intron Octbeta3R - chr3R_25_12540001 chr3R_12540001 RAL-502 2122 chr3R 12558221 12558273 chr3R 12558325 12558379 20 102 4.0 4.0 4.0 4.0 158 chr3R 12558221 intron Octbeta2R - chr3R 12558300 intron Octbeta2R - chr3R 12558379 intron Octbeta2R - chr3R_20_12555001 chr3R_12555001 RAL-502 2123 chr3R 12735162 12735173 chr3R 12735430 12735443 5 270 6.0 6.5 6.2 0.7 281 chr3R 12735162 intergenic not near genes chr3R 12735302 intergenic not near genes chr3R 12735443 intergenic not near genes chr3R_5_12735001 chr3R_12735001 RAL-502 2124 chr3R 12787924 12787952 chr3R 12788024 12788055 6 102 2.5 2.0 2.2 1.9 131 chr3R 12787924 intergenic not near genes chr3R 12787990 intergenic not near genes chr3R 12788055 intergenic not near genes chr3R_6_12785001 chr3R_12785001 RAL-502 2125 chr3R 12805842 12805883 chr3R 12805948 12805989 8 104 5.0 5.5 5.2 1.3 147 chr3R 12805842 intergenic not near genes chr3R 12805916 intergenic not near genes chr3R 12805989 intergenic not near genes chr3R_8_12805001 chr3R_12805001 RAL-502 2126 chr3R 12819013 12819048 chr3R 12819116 12819151 12 101 7.0 4.0 5.5 1.8 138 chr3R 12819013 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819151 intergenic not near genes chr3R_12_12815001 chr3R_12815001 RAL-502 2127 chr3R 12876932 12876959 chr3R 12877035 12877062 12 101 6.5 5.0 5.8 1.8 130 chr3R 12876932 intergenic not near genes chr3R 12876997 intergenic not near genes chr3R 12877062 intergenic not near genes chr3R_12_12875001 chr3R_12875001 RAL-502 2128 chr3R 12920137 12920184 chr3R 12925357 12925405 copia 12 5219 5.5 7.5 6.5 1.6 5268 chr3R 12920137 intron beat-Vb + chr3R 12922771 intron beat-Vb + chr3R 12925405 intron beat-Vb + chr3R_12_12920001 chr3R_12920001 RAL-502 2129 chr3R 12926709 12926749 chr3R 12926839 12926880 16 130 2.5 5.0 3.8 3.3 171 chr3R 12926709 intron beat-Vb + chr3R 12926794 intron beat-Vb + chr3R 12926880 intron beat-Vb + chr3R_16_12925001 chr3R_12925001 RAL-502 2130 chr3R 13066984 13067131 chr3R 13067091 13067227 20 101 0.5 0.0 0.2 16.7 243 chr3R 13066984 intron sim + chr3R 13067106 intron sim + chr3R 13067227 intron sim + chr3R_20_13065001 chr3R_13065001 RAL-502 2131 chr3R 13073964 13074004 chr3R 13074063 13074083 9 95 2.5 0.5 1.5 3.6 119 chr3R 13073964 intron sim + chr3R 13074024 intron sim + chr3R 13074083 exon sim + chr3R_9_13070001 chr3R_13070001 RAL-502 2132 chr3R 13075351 13075382 chr3R 13075445 13075483 7 100 2.0 1.5 1.8 2.5 132 chr3R 13075351 intron sim + chr3R 13075417 intron sim + chr3R 13075483 intron sim + chr3R_7_13075001 chr3R_13075001 RAL-502 2133 chr3R 13104419 13104420 chr3R 21907534 21907536 10 8803116 29.5 25.0 27.2 0.4 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_10_17505001 chr3R_17505001 RAL-502 2134 chr3R 13120755 13120799 chr3R 13120848 13120894 12 86 5.0 5.5 5.2 1.9 139 chr3R 13120755 intron timeout + chr3R 13120824 intron timeout + chr3R 13120894 intron timeout + chr3R_12_13120001 chr3R_13120001 RAL-502 2135 chr3R 13135809 13135858 chr3R 13138004 13138053 pogo 15 2194 5.5 4.0 4.8 2.6 2244 chr3R 13135809 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136931 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138053 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_15_13135001 chr3R_13135001 RAL-502 2136 chr3R 13143019 13143066 chr3R 13148615 13148620 mdg3 10 5581 3.5 10.0 6.8 1.3 5601 chr3R 13143019 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145820 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148620 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13145001 chr3R_13145001 RAL-502 2137 chr3R 13194078 13194128 chr3R 13194687 13194737 8 608 3.0 4.0 3.5 1.8 659 chr3R 13194078 intergenic not near genes chr3R 13194408 intergenic not near genes chr3R 13194737 intergenic not near genes chr3R_8_13190001 chr3R_13190001 RAL-502 2138 chr3R 13195940 13195977 chr3R 13196045 13196092 11 107 4.0 3.0 3.5 2.4 152 chr3R 13195940 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196092 intergenic not near genes chr3R_11_13195001 chr3R_13195001 RAL-502 2139 chr3R 13200357 13200370 chr3R 13202901 13202909 7 2543 2.0 3.0 2.5 2.0 2552 chr3R 13200357 intergenic not near genes chr3R 13201633 intergenic not near genes chr3R 13202909 intergenic not near genes chr3R_7_13200001 chr3R_13200001 RAL-502 2140 chr3R 13365005 13365020 chr3R 13365113 13365139 4 115 1.5 4.5 3.0 1.0 134 chr3R 13365005 intron,5` UTR poly -,Dic1 + chr3R 13365072 intron,5` UTR poly -,Dic1 + chr3R 13365139 intron,5` UTR poly -,Dic1 + chr3R_4_13365001 chr3R_13365001 RAL-502 2141 chr3R 13418646 13418678 chr3R 13418740 13418774 8 94 5.5 3.0 4.2 1.5 128 chr3R 13418646 intergenic not near genes chr3R 13418710 intergenic not near genes chr3R 13418774 intergenic not near genes chr3R_8_13415001 chr3R_13415001 RAL-502 2142 chr3R 13435388 13435416 chr3R 13435562 13435611 9 187 1.5 2.0 1.8 3.2 223 chr3R 13435388 intergenic yrt - chr3R 13435500 intergenic not near genes chr3R 13435611 intergenic not near genes chr3R_9_13435001 chr3R_13435001 RAL-502 2143 chr3R 13496610 13496662 chr3R 13496709 13496761 6 98 1.0 2.0 1.5 2.4 151 chr3R 13496610 intergenic not near genes chr3R 13496686 intergenic not near genes chr3R 13496761 intergenic not near genes chr3R_6_13495001 chr3R_13495001 RAL-502 2144 chr3R 13505835 13505862 chr3R 13505931 13505958 5 92 11.5 2.5 7.0 0.6 123 chr3R 13505835 intergenic not near genes chr3R 13505896 intergenic not near genes chr3R 13505958 intergenic not near genes chr3R_5_13505001 chr3R_13505001 RAL-502 2145 chr3R 13517243 13517259 chr3R 13520080 13520096 jockey 5 2835 1.5 0.0 0.8 2.8 2853 chr3R 13517243 intergenic not near genes chr3R 13518670 intergenic not near genes chr3R 13520096 intergenic not near genes chr3R_5_13515001 chr3R_13515001 RAL-502 2146 chr3R 13558018 13558047 chr3R 13558124 13558153 12 102 8.0 8.0 8.0 1.3 135 chr3R 13558018 intergenic not near genes chr3R 13558086 intergenic not near genes chr3R 13558153 intergenic not near genes chr3R_12_13555001 chr3R_13555001 RAL-502 2147 chr3R 13603042 13603077 chr3R 13603153 13603184 8 110 5.0 3.5 4.2 1.5 142 chr3R 13603042 intergenic not near genes chr3R 13603113 intergenic not near genes chr3R 13603184 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-502 2148 chr3R 13606694 13606732 chr3R 13606858 13606899 10 165 1.5 4.5 3.0 2.5 205 chr3R 13606694 intergenic CG9759 - chr3R 13606796 intergenic CG9759 - chr3R 13606899 intergenic CG9759 - chr3R_10_13605001 chr3R_13605001 RAL-502 2149 chr3R 13672924 13672975 chr3R 13673022 13673071 14 94 5.0 3.5 4.2 2.7 147 chr3R 13672924 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673071 intron Task6 - chr3R_14_13670001 chr3R_13670001 RAL-502 2150 chr3R 13693028 13693028 chr3R 21907534 21907536 10 8214507 19.0 25.0 22.0 0.4 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-502 2151 chr3R 13749198 13749246 chr3R 13749292 13749341 16 96 3.0 1.5 2.2 5.0 143 chr3R 13749198 intron CG34383 + chr3R 13749270 intron CG34383 + chr3R 13749341 intron CG34383 + chr3R_16_13745001 chr3R_13745001 RAL-502 2152 chr3R 13830733 13830785 chr3R 13830915 13830952 11 182 1.5 4.0 2.8 2.9 219 chr3R 13830733 intergenic not near genes chr3R 13830842 intergenic not near genes chr3R 13830952 intergenic not near genes chr3R_11_13830001 chr3R_13830001 RAL-502 2153 chr3R 13850292 13850342 chr3R 13850407 13850441 14 109 0.0 6.0 3.0 3.5 149 chr3R 13850292 intergenic not near genes chr3R 13850366 intergenic not near genes chr3R 13850441 intergenic not near genes chr3R_14_13850001 chr3R_13850001 RAL-502 2154 chr3R 13863683 13863714 chr3R 13863766 13863816 7 97 5.5 7.0 6.2 1.0 133 chr3R 13863683 intergenic not near genes chr3R 13863750 intergenic not near genes chr3R 13863816 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-502 2155 chr3R 13880555 13880570 chr3R 13880666 13880697 7 132 5.0 3.0 4.0 1.4 142 chr3R 13880555 intergenic not near genes chr3R 13880626 intergenic not near genes chr3R 13880697 intergenic not near genes chr3R_7_13880001 chr3R_13880001 RAL-502 2156 chr3R 13948216 13948245 chr3R 13948314 13948340 7 97 4.0 4.0 4.0 1.4 124 chr3R 13948216 intergenic CG31517 + chr3R 13948278 intergenic CG31517 + chr3R 13948340 intergenic CG31517 + chr3R_7_13945001 chr3R_13945001 RAL-502 2157 chr3R 14021628 14021679 chr3R 14023465 14023516 S-element 11 1835 4.5 3.5 4.0 2.2 1888 chr3R 14021628 intron rdx - chr3R 14022572 intron rdx - chr3R 14023516 intron rdx - chr3R_11_14020001 chr3R_14020001 RAL-502 2158 chr3R 14037577 14037584 chr3R 14037664 14037685 4 93 4.5 5.5 5.0 0.7 108 chr3R 14037577 intergenic not near genes chr3R 14037631 intergenic not near genes chr3R 14037685 intergenic not near genes chr3R_4_14035001 chr3R_14035001 RAL-502 2159 chr3R 14047758 14047803 chr3R 14047869 14047912 4 110 0.0 5.0 2.5 1.1 154 chr3R 14047758 intergenic not near genes chr3R 14047835 intergenic not near genes chr3R 14047912 intergenic not near genes chr3R_4_14045001 chr3R_14045001 RAL-502 2160 chr3R 14067122 14067155 chr3R 14067221 14067254 15 98 2.5 1.0 1.8 5.4 132 chr3R 14067122 exon foxo + chr3R 14067188 intron foxo + chr3R 14067254 intron foxo + chr3R_15_14065001 chr3R_14065001 RAL-502 2161 chr3R 14083405 14083423 chr3R 14083503 14083544 5 116 10.0 0.0 5.0 0.8 139 chr3R 14083405 intron foxo + chr3R 14083474 intron foxo + chr3R 14083544 intron foxo + chr3R_5_14080001 chr3R_14080001 RAL-502 2162 chr3R 14166691 14166696 chr3R 14167311 14167360 4 647 3.0 3.5 3.2 1.0 669 chr3R 14166691 3` UTR Dop1R1 - chr3R 14167026 3` UTR Dop1R1 - chr3R 14167360 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-502 2163 chr3R 14246398 14246415 chr3R 14247886 14247926 jockey 5 1506 4.0 3.0 3.5 1.1 1528 chr3R 14246398 intergenic not near genes chr3R 14247162 intergenic not near genes chr3R 14247926 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-502 2164 chr3R 14279052 14279064 chr3R 14279182 14279194 6 130 12.5 6.5 9.5 0.6 142 chr3R 14279052 intron trx - chr3R 14279123 intron trx - chr3R 14279194 intron trx - chr3R_6_14275001 chr3R_14275001 RAL-502 2165 chr3R 14440706 14440750 chr3R 14440797 14440845 8 92 0.5 2.0 1.2 3.6 139 chr3R 14440706 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440845 intron cv-c - chr3R_8_14440001 chr3R_14440001 RAL-502 2166 chr3R 14527400 14527410 chr3R 14527480 14527506 6 90 6.0 6.0 6.0 0.9 106 chr3R 14527400 intron Pde6 - chr3R 14527453 intron Pde6 - chr3R 14527506 intron Pde6 - chr3R_6_14525001 chr3R_14525001 RAL-502 2167 chr3R 14533584 14533594 chr3R 14533692 14533702 4 108 0.0 3.0 1.5 1.6 118 chr3R 14533584 intron Pde6 - chr3R 14533643 intron Pde6 - chr3R 14533702 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-502 2168 chr3R 14548558 14548582 chr3R 14548664 14548689 4 107 12.5 5.5 9.0 0.4 131 chr3R 14548558 intron Pde6 - chr3R 14548624 intron Pde6 - chr3R 14548689 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-502 2169 chr3R 14577940 14577976 chr3R 14578076 14578112 9 135 2.5 3.0 2.8 2.4 172 chr3R 14577940 intron stumps + chr3R 14578026 intron stumps + chr3R 14578112 intron stumps + chr3R_9_14575001 chr3R_14575001 RAL-502 2170 chr3R 14601700 14601722 chr3R 14601773 14601818 6 92 3.0 0.0 1.5 2.4 118 chr3R 14601700 intron stumps + chr3R 14601759 intron stumps + chr3R 14601818 intron stumps + chr3R_6_14600001 chr3R_14600001 RAL-502 2171 chr3R 14608454 14608477 chr3R 14608549 14608589 10 107 5.5 4.0 4.8 1.7 135 chr3R 14608454 intergenic stumps + chr3R 14608522 intergenic stumps + chr3R 14608589 intergenic not near genes chr3R_10_14605001 chr3R_14605001 RAL-502 2172 chr3R 14662296 14662337 chr3R 14662397 14662434 17 97 4.0 4.0 4.0 3.4 138 chr3R 14662296 exon Rad17 - chr3R 14662365 intron Rad17 - chr3R 14662434 exon Rad17 - chr3R_17_14660001 chr3R_14660001 RAL-502 2173 chr3R 14685767 14685770 chr3R 14685867 14685871 5 101 10.0 3.5 6.8 0.6 104 chr3R 14685767 intron Meltrin - chr3R 14685819 intron Meltrin - chr3R 14685871 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-502 2174 chr3R 14685773 14685815 chr3R 14685865 14685915 13 89 2.5 3.0 2.8 3.4 142 chr3R 14685773 intron Meltrin - chr3R 14685844 intron Meltrin - chr3R 14685915 intron Meltrin - chr3R_13_14685001 chr3R_14685001 RAL-502 2175 chr3R 14704374 14704416 chr3R 14704461 14704497 15 93 3.5 2.5 3.0 3.8 123 chr3R 14704374 intron kibra - chr3R 14704436 intron kibra - chr3R 14704497 intron kibra - chr3R_15_14700001 chr3R_14700001 RAL-502 2176 chr3R 14764552 14764584 chr3R 14764670 14764702 5 119 2.0 4.0 3.0 1.2 150 chr3R 14764552 intron jvl + chr3R 14764627 intron jvl + chr3R 14764702 intron jvl + chr3R_5_14760001 chr3R_14760001 RAL-502 2177 chr3R 14779053 14779094 chr3R 14779145 14779187 16 97 3.0 3.0 3.0 4.0 134 chr3R 14779053 intron jvl + chr3R 14779120 intron jvl + chr3R 14779187 intron jvl + chr3R_16_14775001 chr3R_14775001 RAL-502 2178 chr3R 14795661 14795685 chr3R 14795761 14795789 7 100 3.5 1.0 2.2 2.2 128 chr3R 14795661 3` UTR jvl + chr3R 14795725 3` UTR jvl + chr3R 14795789 3` UTR jvl + chr3R_7_14795001 chr3R_14795001 RAL-502 2179 chr3R 14898454 14898503 chr3R 14898594 14898637 13 139 4.5 4.0 4.2 2.5 183 chr3R 14898454 intergenic Nup93-2 -,CG3817 + chr3R 14898546 intergenic Nup93-2 -,CG3817 + chr3R 14898637 intergenic CG3817 +,Nup93-2 - chr3R_13_14895001 chr3R_14895001 RAL-502 2180 chr3R 14924349 14924377 chr3R 14924456 14924475 8 104 7.0 5.0 6.0 1.1 126 chr3R 14924349 intergenic not near genes chr3R 14924412 intergenic not near genes chr3R 14924475 intergenic not near genes chr3R_8_14920001 chr3R_14920001 RAL-502 2181 chr3R 15005622 15005634 chr3R 15005953 15005965 4 331 1.5 3.0 2.2 1.2 343 chr3R 15005622 intergenic not near genes chr3R 15005794 intergenic not near genes chr3R 15005965 intergenic not near genes chr3R_4_15005001 chr3R_15005001 RAL-502 2182 chr3R 15026310 15026346 chr3R 15026416 15026451 14 106 4.5 2.5 3.5 3.1 141 chr3R 15026310 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026451 intergenic not near genes chr3R_14_15025001 chr3R_15025001 RAL-502 2183 chr3R 15041423 15041449 chr3R 15045207 15045237 Doc 6 3787 2.0 4.5 3.2 1.4 3814 chr3R 15041423 intergenic not near genes chr3R 15043330 intergenic not near genes chr3R 15045237 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-502 2184 chr3R 15059265 15059479 chr3R 15059479 15059585 BS 7 178 0.0 0.0 0.0 7.0 320 chr3R 15059265 intron dpr9 - chr3R 15059425 intron dpr9 - chr3R 15059585 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-502 2185 chr3R 15078332 15078374 chr3R 15078423 15078472 15 96 2.5 2.0 2.2 4.7 140 chr3R 15078332 intergenic CG6974 - chr3R 15078402 intergenic CG6974 - chr3R 15078472 intergenic CG6974 - chr3R_15_15075001 chr3R_15075001 RAL-502 2186 chr3R 15079793 15079812 chr3R 15080054 15080067 pogo 9 259 13.5 0.5 7.0 1.1 274 chr3R 15079793 3` UTR CG6966 - chr3R 15079930 3` UTR CG6966 - chr3R 15080067 3` UTR CG6966 - chr3R_9_15075001 chr3R_15075001 RAL-502 2187 chr3R 15084138 15084177 chr3R 15084290 15084309 8 149 3.5 6.0 4.8 1.4 171 chr3R 15084138 intron CG6966 - chr3R 15084224 intron CG6966 - chr3R 15084309 intron CG6966 - chr3R_8_15080001 chr3R_15080001 RAL-502 2188 chr3R 15102481 15102527 chr3R 15109755 15109799 412 11 7273 4.0 4.0 4.0 2.2 7318 chr3R 15102481 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109799 intron CG42788 - chr3R_11_15105001 chr3R_15105001 RAL-502 2189 chr3R 15114908 15114927 chr3R 15114999 15115020 4 94 3.0 5.0 4.0 0.8 112 chr3R 15114908 intron CG42788 - chr3R 15114964 intron CG42788 - chr3R 15115020 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-502 2190 chr3R 15127762 15127804 chr3R 15127862 15127904 8 100 5.0 1.5 3.2 1.9 142 chr3R 15127762 intron CG42788 - chr3R 15127833 intron CG42788 - chr3R 15127904 intron CG42788 - chr3R_8_15125001 chr3R_15125001 RAL-502 2191 chr3R 15132046 15132072 chr3R 15135126 15135152 Juan 12 3080 7.5 8.5 8.0 1.3 3106 chr3R 15132046 intergenic CG42788 - chr3R 15133599 intergenic not near genes chr3R 15135152 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 RAL-502 2192 chr3R 15162535 15162561 chr3R 15167318 15167340 F-element 8 4783 2.5 6.0 4.2 1.5 4805 chr3R 15162535 intron Gyc88E + chr3R 15164938 intron Gyc88E + chr3R 15167340 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-502 2193 chr3R 15184538 15184570 chr3R 15184619 15184646 13 88 2.0 9.5 5.8 1.9 108 chr3R 15184538 intron Gyc88E + chr3R 15184592 intron Gyc88E + chr3R 15184646 intron Gyc88E + chr3R_13_15180001 chr3R_15180001 RAL-502 2194 chr3R 15190645 15190681 chr3R 15190790 15190826 8 144 3.0 4.0 3.5 1.8 181 chr3R 15190645 3` UTR Gyc88E + chr3R 15190736 3` UTR Gyc88E + chr3R 15190826 3` UTR Gyc88E + chr3R_8_15190001 chr3R_15190001 RAL-502 2195 chr3R 15286987 15286989 chr3R 21907534 21907534 4 6620547 17.0 25.0 21.0 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-502 2196 chr3R 15406126 15406169 chr3R 15406227 15406270 7 100 2.5 4.5 3.5 1.6 144 chr3R 15406126 intron CG6125 - chr3R 15406198 intron CG6125 - chr3R 15406270 intron CG6125 - chr3R_7_15405001 chr3R_15405001 RAL-502 2197 chr3R 15439548 15439563 chr3R 15439708 15439723 5 160 4.5 0.0 2.2 1.6 175 chr3R 15439548 intergenic Act88F + chr3R 15439636 intergenic Act88F + chr3R 15439723 intergenic Act88F + chr3R_5_15435001 chr3R_15435001 RAL-502 2198 chr3R 15452256 15452307 chr3R 15452353 15452392 23 95 4.0 7.0 5.5 3.5 136 chr3R 15452256 intron AdamTS-A - chr3R 15452324 intron AdamTS-A - chr3R 15452392 intron AdamTS-A - chr3R_23_15450001 chr3R_15450001 RAL-502 2199 chr3R 15517580 15517618 chr3R 15517683 15517692 8 94 4.0 4.0 4.0 1.6 112 chr3R 15517580 intergenic not near genes chr3R 15517636 intergenic not near genes chr3R 15517692 intergenic not near genes chr3R_8_15515001 chr3R_15515001 RAL-502 2200 chr3R 15517621 15517633 chr3R 15517680 15517735 4 89 3.0 3.5 3.2 1.0 114 chr3R 15517621 intergenic not near genes chr3R 15517678 intergenic not near genes chr3R 15517735 intergenic not near genes chr3R_4_15515001 chr3R_15515001 RAL-502 2201 chr3R 15601154 15601172 chr3R 15608696 15608714 412 7 7539 14.5 8.5 11.5 0.6 7560 chr3R 15601154 intergenic not near genes chr3R 15604934 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-502 2202 chr3R 15601175 15601196 chr3R 15608687 15608736 412 11 7537 10.0 7.5 8.8 1.1 7561 chr3R 15601175 intergenic not near genes chr3R 15604956 intergenic not near genes chr3R 15608736 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-502 2203 chr3R 15618753 15618763 chr3R 15626224 15626255 blood 4 7485 1.0 4.0 2.5 1.1 7502 chr3R 15618753 intergenic not near genes chr3R 15622504 intergenic not near genes chr3R 15626255 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-502 2204 chr3R 15635193 15635237 chr3R 15635314 15635358 9 121 0.5 2.0 1.2 4.1 165 chr3R 15635193 intergenic CG43335 + chr3R 15635276 intergenic CG43335 + chr3R 15635358 intergenic CG43335 + chr3R_9_15635001 chr3R_15635001 RAL-502 2205 chr3R 15644096 15644137 chr3R 15644190 15644238 10 95 4.5 2.5 3.5 2.2 142 chr3R 15644096 intergenic not near genes chr3R 15644167 intergenic not near genes chr3R 15644238 intergenic not near genes chr3R_10_15640001 chr3R_15640001 RAL-502 2206 chr3R 15691163 15691324 chr3R 15691287 15691429 17 114 0.5 0.5 0.5 11.3 266 chr3R 15691163 intergenic not near genes chr3R 15691296 intergenic not near genes chr3R 15691429 intergenic not near genes chr3R_17_15690001 chr3R_15690001 RAL-502 2207 chr3R 15734159 15734190 chr3R 15734266 15734285 6 105 9.5 6.0 7.8 0.7 126 chr3R 15734159 intergenic not near genes chr3R 15734222 intergenic not near genes chr3R 15734285 intergenic not near genes chr3R_6_15730001 chr3R_15730001 RAL-502 2208 chr3R 15735226 15735234 chr3R 15739966 15739973 F-element 6 4740 2.0 4.0 3.0 1.5 4747 chr3R 15735226 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739973 intergenic not near genes chr3R_6_15735001 chr3R_15735001 RAL-502 2209 chr3R 15790115 15790270 chr3R 15790241 15790407 13 127 12.5 14.0 13.2 0.9 292 chr3R 15790115 exon c(3)G - chr3R 15790261 exon c(3)G - chr3R 15790407 exon c(3)G - chr3R_13_15790001 chr3R_15790001 RAL-502 2210 chr3R 15790282 15790399 chr3R 15790573 15790625 9 254 20.0 30.5 25.2 0.3 343 chr3R 15790282 exon c(3)G - chr3R 15790454 exon c(3)G - chr3R 15790625 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-502 2211 chr3R 15790826 15790851 chr3R 15790962 15790982 7 128 25.0 27.5 26.2 0.3 156 chr3R 15790826 exon c(3)G - chr3R 15790904 intron c(3)G - chr3R 15790982 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-502 2212 chr3R 15790854 15790869 chr3R 15790954 15791005 6 129 25.5 26.0 25.8 0.2 151 chr3R 15790854 exon c(3)G - chr3R 15790930 intron c(3)G - chr3R 15791005 exon c(3)G - chr3R_6_15790001 chr3R_15790001 RAL-502 2213 chr3R 15844092 15844129 chr3R 15844204 15844246 7 116 5.0 1.5 3.2 1.7 154 chr3R 15844092 exon spn-E + chr3R 15844169 3` UTR spn-E + chr3R 15844246 3` UTR spn-E + chr3R_7_15840001 chr3R_15840001 RAL-502 2214 chr3R 15878073 15878101 chr3R 15878181 15878209 13 108 6.5 8.5 7.5 1.5 136 chr3R 15878073 intergenic not near genes chr3R 15878141 intergenic not near genes chr3R 15878209 intergenic not near genes chr3R_13_15875001 chr3R_15875001 RAL-502 2215 chr3R 15878591 15878629 chr3R 15878685 15878729 8 97 7.5 11.0 9.2 0.8 138 chr3R 15878591 intergenic not near genes chr3R 15878660 intergenic not near genes chr3R 15878729 intergenic not near genes chr3R_8_15875001 chr3R_15875001 RAL-502 2216 chr3R 16023854 16023878 chr3R 16023951 16023975 6 95 3.5 4.5 4.0 1.2 121 chr3R 16023854 intergenic not near genes chr3R 16023914 intergenic not near genes chr3R 16023975 intergenic not near genes chr3R_6_16020001 chr3R_16020001 RAL-502 2217 chr3R 16192688 16192731 chr3R 16192778 16192817 15 79 1.5 3.5 2.5 4.3 129 chr3R 16192688 intron sra + chr3R 16192752 intron sra + chr3R 16192817 intron sra + chr3R_15_16190001 chr3R_16190001 RAL-502 2218 chr3R 16246542 16246556 chr3R 16246605 16246652 5 89 0.0 3.5 1.8 1.8 110 chr3R 16246542 intron tara + chr3R 16246597 intron tara + chr3R 16246652 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-502 2219 chr3R 16253514 16253572 chr3R 16253620 16253677 5 105 0.0 1.0 0.5 3.3 163 chr3R 16253514 intron tara + chr3R 16253596 intron tara + chr3R 16253677 intron tara + chr3R_5_16250001 chr3R_16250001 RAL-502 2220 chr3R 16255689 16255703 chr3R 16255789 16255804 7 101 5.0 0.0 2.5 2.0 115 chr3R 16255689 intron tara + chr3R 16255746 intron tara + chr3R 16255804 intron tara + chr3R_7_16255001 chr3R_16255001 RAL-502 2221 chr3R 16374278 16374325 chr3R 16374415 16374450 7 134 3.0 4.5 3.8 1.5 172 chr3R 16374278 intergenic ss - chr3R 16374364 intergenic ss - chr3R 16374450 3` UTR ss - chr3R_7_16370001 chr3R_16370001 RAL-502 2222 chr3R 16472565 16472571 chr3R 16472661 16472663 4 94 12.5 5.0 8.8 0.4 98 chr3R 16472565 intergenic Gyc-89Da + chr3R 16472614 5` UTR Gyc-89Da + chr3R 16472663 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-502 2223 chr3R 16731920 16732071 chr3R 16732020 16732168 12 98 1.0 1.5 1.2 5.5 248 chr3R 16731920 intron Ubx - chr3R 16732044 intron Ubx - chr3R 16732168 intron Ubx - chr3R_12_16730001 chr3R_16730001 RAL-502 2224 chr3R 16756302 16756337 chr3R 16762510 16762539 diver 11 6205 5.0 3.0 4.0 2.2 6237 chr3R 16756302 intron bxd - chr3R 16759420 intron bxd - chr3R 16762539 intron bxd - chr3R_11_16755001 chr3R_16755001 RAL-502 2225 chr3R 17059607 17059616 chr3R 17059707 17059716 6 100 18.5 8.5 13.5 0.4 109 chr3R 17059607 intron Dad + chr3R 17059662 intron Dad + chr3R 17059716 intron Dad + chr3R_6_17055001 chr3R_17055001 RAL-502 2226 chr3R 17059617 17059650 chr3R 17059701 17059745 17 96 8.5 7.5 8.0 1.9 128 chr3R 17059617 intron Dad + chr3R 17059681 intron Dad + chr3R 17059745 intron Dad + chr3R_17_17055001 chr3R_17055001 RAL-502 2227 chr3R 17155670 17155680 chr3R 17155749 17155763 4 83 8.5 4.5 6.5 0.5 93 chr3R 17155670 exon Mur89F - chr3R 17155716 exon Mur89F - chr3R 17155763 exon Mur89F - chr3R_4_17155001 chr3R_17155001 RAL-502 2228 chr3R 17172984 17173014 chr3R 17173086 17173094 8 98 5.5 8.0 6.8 1.0 110 chr3R 17172984 intron Mur89F - chr3R 17173039 intron Mur89F - chr3R 17173094 intron Mur89F - chr3R_8_17170001 chr3R_17170001 RAL-502 2229 chr3R 17184722 17184755 chr3R 17184817 17184851 8 96 1.0 3.0 2.0 2.7 129 chr3R 17184722 intron Mur89F - chr3R 17184786 intron Mur89F - chr3R 17184851 intron Mur89F - chr3R_8_17180001 chr3R_17180001 RAL-502 2230 chr3R 17194388 17194411 chr3R 17194486 17194510 4 93 3.5 3.0 3.2 1.0 122 chr3R 17194388 intron Mur89F - chr3R 17194449 intron Mur89F - chr3R 17194510 intron Mur89F - chr3R_4_17190001 chr3R_17190001 RAL-502 2231 chr3R 17212963 17212995 chr3R 17213096 17213128 4 129 2.5 3.0 2.8 1.1 165 chr3R 17212963 intergenic not near genes chr3R 17213046 intergenic not near genes chr3R 17213128 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-502 2232 chr3R 17242641 17242678 chr3R 17242743 17242780 9 100 7.5 3.5 5.5 1.4 139 chr3R 17242641 intron beat-IIb - chr3R 17242710 intron beat-IIb - chr3R 17242780 intron beat-IIb - chr3R_9_17240001 chr3R_17240001 RAL-502 2233 chr3R 17268659 17268703 chr3R 17268801 17268823 11 139 4.5 6.5 5.5 1.7 164 chr3R 17268659 intergenic not near genes chr3R 17268741 intergenic not near genes chr3R 17268823 intergenic not near genes chr3R_11_17265001 chr3R_17265001 RAL-502 2234 chr3R 17294655 17294686 chr3R 17295103 17295122 BS 17 445 6.5 5.5 6.0 2.4 467 chr3R 17294655 intergenic not near genes chr3R 17294888 intergenic not near genes chr3R 17295122 intergenic not near genes chr3R_17_17290001 chr3R_17290001 RAL-502 2235 chr3R 17348708 17348754 chr3R 17348809 17348847 12 101 4.0 2.5 3.2 2.9 139 chr3R 17348708 intron beat-IIa - chr3R 17348778 intron beat-IIa - chr3R 17348847 intron beat-IIa - chr3R_12_17345001 chr3R_17345001 RAL-502 2236 chr3R 17363919 17363964 chr3R 17364473 17364481 5 541 2.5 3.0 2.8 1.3 562 chr3R 17363919 intron beat-IIa - chr3R 17364200 intron beat-IIa - chr3R 17364481 intron beat-IIa - chr3R_5_17360001 chr3R_17360001 RAL-502 2237 chr3R 17382008 17382051 chr3R 17382123 17382168 25 116 5.0 4.0 4.5 4.5 160 chr3R 17382008 intron,intron Brf -,lute + chr3R 17382088 intron,intron Brf -,lute + chr3R 17382168 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R_25_17380001 chr3R_17380001 RAL-502 2238 chr3R 17389054 17389054 chr3R 21907534 21907536 4 4518481 14.0 25.0 19.5 0.2 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-502 2239 chr3R 17406982 17407032 chr3R 17407104 17407154 9 122 0.0 3.5 1.8 3.2 172 chr3R 17406982 intron CG42798 + chr3R 17407068 5` UTR CG42798 + chr3R 17407154 exon CG42798 + chr3R_9_17405001 chr3R_17405001 RAL-502 2240 chr3R 17461183 17461230 chr3R 17461285 17461329 15 102 1.0 4.5 2.8 3.9 146 chr3R 17461183 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461329 intergenic not near genes chr3R_15_17460001 chr3R_17460001 RAL-502 2241 chr3R 17467500 17467519 chr3R 17467591 17467623 8 94 6.0 5.0 5.5 1.2 123 chr3R 17467500 intergenic not near genes chr3R 17467562 intergenic not near genes chr3R 17467623 intergenic not near genes chr3R_8_17465001 chr3R_17465001 RAL-502 2242 chr3R 17491347 17491383 chr3R 17491460 17491507 17 118 1.5 5.0 3.2 4.0 160 chr3R 17491347 intron Dscam3 - chr3R 17491427 intron Dscam3 - chr3R 17491507 intron Dscam3 - chr3R_17_17490001 chr3R_17490001 RAL-502 2243 chr3R 17517690 17517702 chr3R 17517772 17517785 7 90 5.0 4.5 4.8 1.2 95 chr3R 17517690 intergenic not near genes chr3R 17517738 intergenic CR44349 - chr3R 17517785 intergenic CR44349 - chr3R_7_17515001 chr3R_17515001 RAL-502 2244 chr3R 17521578 17521590 chr3R 17521721 17521730 6 159 1.5 6.5 4.0 1.2 152 chr3R 17521578 intergenic not near genes chr3R 17521654 intergenic not near genes chr3R 17521730 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-502 2245 chr3R 17522203 17522245 chr3R 17522305 17522321 4 100 4.0 0.5 2.2 1.2 118 chr3R 17522203 intergenic not near genes chr3R 17522262 intergenic not near genes chr3R 17522321 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-502 2246 chr3R 17638301 17638347 chr3R 17638807 17638853 roo 6 506 4.5 3.5 4.0 1.2 552 chr3R 17638301 intron CG43175 + chr3R 17638577 intron CG43175 + chr3R 17638853 intron,intron CG43175 +,CR45222 + chr3R_6_17635001 chr3R_17635001 RAL-502 2247 chr3R 17655437 17655481 chr3R 17655552 17655596 6 114 1.0 5.0 3.0 1.5 159 chr3R 17655437 intron CG14322 + chr3R 17655516 intron CG14322 + chr3R 17655596 intron CG14322 + chr3R_6_17655001 chr3R_17655001 RAL-502 2248 chr3R 17725053 17725074 chr3R 17725167 17725186 5 114 8.0 0.0 4.0 1.0 133 chr3R 17725053 intergenic Atg8b - chr3R 17725120 intergenic Atg8b - chr3R 17725186 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 RAL-502 2249 chr3R 17734829 17734860 chr3R 17734960 17734993 5 132 2.0 1.0 1.5 2.0 164 chr3R 17734829 intergenic CG14321 + chr3R 17734911 intergenic not near genes chr3R 17734993 intergenic not near genes chr3R_5_17730001 chr3R_17730001 RAL-502 2250 chr3R 17773372 17773389 chr3R 17773472 17773489 7 99 4.0 5.0 4.5 1.3 117 chr3R 17773372 intron CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773489 exon CG43102 - chr3R_7_17770001 chr3R_17770001 RAL-502 2251 chr3R 17823192 17823219 chr3R 17823296 17823324 14 104 7.5 7.5 7.5 1.6 132 chr3R 17823192 intron tinc + chr3R 17823258 intron tinc + chr3R 17823324 intron tinc + chr3R_14_17820001 chr3R_17820001 RAL-502 2252 chr3R 17810033 17810055 chr3R 17832730 17832753 4 22697 27.5 13.5 20.5 0.2 22720 chr3R 17810033 3` UTR CG18012 - chr3R 17821393 intron tinc + chr3R 17832753 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-502 2253 chr3R 17840338 17840357 chr3R 17840450 17840469 5 112 7.0 2.5 4.8 0.9 131 chr3R 17840338 intron tinc + chr3R 17840404 intron tinc + chr3R 17840469 intron tinc + chr3R_5_17840001 chr3R_17840001 RAL-502 2254 chr3R 17913103 17913148 chr3R 17913218 17913263 9 114 5.0 5.5 5.2 1.5 160 chr3R 17913103 intron Rim - chr3R 17913183 intron Rim - chr3R 17913263 intron Rim - chr3R_9_17910001 chr3R_17910001 RAL-502 2255 chr3R 17915547 17915595 chr3R 17915720 17915767 8 173 4.0 2.0 3.0 2.0 220 chr3R 17915547 intron Rim - chr3R 17915657 intron Rim - chr3R 17915767 intron Rim - chr3R_8_17915001 chr3R_17915001 RAL-502 2256 chr3R 17925856 17925869 chr3R 17927333 17927356 hobo 4 1483 4.0 8.5 6.2 0.6 1500 chr3R 17925856 intron cpo + chr3R 17926606 intron cpo + chr3R 17927356 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-502 2257 chr3R 17944251 17944254 chr3R 17944356 17944360 4 106 4.0 5.5 4.8 0.7 109 chr3R 17944251 intron cpo + chr3R 17944306 intron cpo + chr3R 17944360 intron cpo + chr3R_4_17940001 chr3R_17940001 RAL-502 2258 chr3R 17944255 17944288 chr3R 17944346 17944387 13 104 0.5 2.5 1.5 5.2 132 chr3R 17944255 intron cpo + chr3R 17944321 intron cpo + chr3R 17944387 intron cpo + chr3R_13_17940001 chr3R_17940001 RAL-502 2259 chr3R 17978733 17978777 chr3R 17978831 17978843 12 93 8.0 6.5 7.2 1.5 110 chr3R 17978733 intron cpo + chr3R 17978788 intron cpo + chr3R 17978843 intron cpo + chr3R_12_17975001 chr3R_17975001 RAL-502 2260 chr3R 18041743 18041768 chr3R 18041838 18041861 9 96 0.0 1.5 0.8 5.0 118 chr3R 18041743 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041861 intergenic not near genes chr3R_9_18040001 chr3R_18040001 RAL-502 2261 chr3R 18061428 18061449 chr3R 18061540 18061561 5 112 1.0 0.0 0.5 3.3 133 chr3R 18061428 intergenic not near genes chr3R 18061494 intergenic not near genes chr3R 18061561 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-502 2262 chr3R 18065664 18065667 chr3R 18065754 18065798 5 121 0.5 4.0 2.2 1.6 134 chr3R 18065664 intergenic not near genes chr3R 18065731 intergenic not near genes chr3R 18065798 intergenic not near genes chr3R_5_18065001 chr3R_18065001 RAL-502 2263 chr3R 18075686 18075711 chr3R 18075852 18075875 7 162 0.0 6.0 3.0 1.8 189 chr3R 18075686 intergenic not near genes chr3R 18075780 intergenic not near genes chr3R 18075875 intergenic not near genes chr3R_7_18075001 chr3R_18075001 RAL-502 2264 chr3R 18136235 18136251 chr3R 18136369 18136385 4 134 4.5 6.0 5.2 0.6 150 chr3R 18136235 intergenic not near genes chr3R 18136310 intergenic not near genes chr3R 18136385 intergenic not near genes chr3R_4_18135001 chr3R_18135001 RAL-502 2265 chr3R 18203695 18203719 chr3R 18203792 18203816 6 94 8.0 6.0 7.0 0.8 121 chr3R 18203695 intron CG7985 + chr3R 18203756 intron CG7985 + chr3R 18203816 intron CG7985 + chr3R_6_18200001 chr3R_18200001 RAL-502 2266 chr3R 18342001 18342045 chr3R 18342099 18342143 7 96 3.5 3.5 3.5 1.6 142 chr3R 18342001 intron CG15803 - chr3R 18342072 intron CG15803 - chr3R 18342143 intron CG15803 - chr3R_7_18340001 chr3R_18340001 RAL-502 2267 chr3R 18379617 18379657 chr3R 18379942 18379982 22 323 3.5 8.0 5.8 3.2 365 chr3R 18379617 intron CG7675 - chr3R 18379800 intron CG7675 - chr3R 18379982 intron CG7675 - chr3R_22_18375001 chr3R_18375001 RAL-502 2268 chr3R 18394457 18394504 chr3R 18394554 18394598 11 93 4.5 3.5 4.0 2.2 141 chr3R 18394457 intron Vha100-2 - chr3R 18394528 intron Vha100-2 - chr3R 18394598 intron Vha100-2 - chr3R_11_18390001 chr3R_18390001 RAL-502 2269 chr3R 18464295 18464339 chr3R 18464450 18464498 4 158 0.0 5.5 2.8 1.1 203 chr3R 18464295 intron fru - chr3R 18464396 intron fru - chr3R 18464498 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-502 2270 chr3R 18485425 18485448 chr3R 18485546 18485570 4 120 6.0 4.0 5.0 0.7 145 chr3R 18485425 intron fru - chr3R 18485498 intron fru - chr3R 18485570 intron fru - chr3R_4_18485001 chr3R_18485001 RAL-502 2271 chr3R 18498171 18498188 chr3R 18498263 18498284 7 95 2.5 2.5 2.5 2.0 113 chr3R 18498171 intron fru - chr3R 18498228 intron fru - chr3R 18498284 intron fru - chr3R_7_18495001 chr3R_18495001 RAL-502 2272 chr3R 18500720 18500732 chr3R 18500860 18500872 8 141 0.0 8.0 4.0 1.6 152 chr3R 18500720 intron fru - chr3R 18500796 intron fru - chr3R 18500872 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-502 2273 chr3R 18528347 18528391 chr3R 18528454 18528498 20 105 6.0 4.5 5.2 3.2 151 chr3R 18528347 intron fru - chr3R 18528422 intron fru - chr3R 18528498 intron fru - chr3R_20_18525001 chr3R_18525001 RAL-502 2274 chr3R 18549399 18549428 chr3R 18549504 18549533 5 104 1.0 2.5 1.8 1.8 134 chr3R 18549399 intergenic not near genes chr3R 18549466 intergenic not near genes chr3R 18549533 intergenic not near genes chr3R_5_18545001 chr3R_18545001 RAL-502 2275 chr3R 18606487 18606498 chr3R 18610739 18610750 F-element 5 4252 6.0 4.5 5.2 0.8 4263 chr3R 18606487 intron,intron qin +,CG14304 - chr3R 18608618 intron,intron qin +,CG14304 - chr3R 18610750 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-502 2276 chr3R 18606504 18606532 chr3R 18610738 18610784 F-element 14 4249 2.0 4.5 3.2 3.3 4280 chr3R 18606504 intron,intron qin +,CG14304 - chr3R 18608644 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_14_18605001 chr3R_18605001 RAL-502 2277 chr3R 18617693 18617736 chr3R 18617793 18617836 7 100 1.5 0.5 1.0 3.5 143 chr3R 18617693 intron,intron qin +,CG14304 - chr3R 18617764 intron,intron qin +,CG14304 - chr3R 18617836 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-502 2278 chr3R 18618245 18618283 chr3R 18618350 18618388 8 104 3.0 2.0 2.5 2.3 143 chr3R 18618245 intron,intron qin +,CG14304 - chr3R 18618316 intron,intron qin +,CG14304 - chr3R 18618388 intron,intron qin +,CG14304 - chr3R_8_18615001 chr3R_18615001 RAL-502 2279 chr3R 18628872 18629030 chr3R 18629016 18629140 9 113 0.0 0.0 0.0 9.0 268 chr3R 18628872 intron qin + chr3R 18629006 intron qin + chr3R 18629140 intron qin + chr3R_9_18625001 chr3R_18625001 RAL-502 2280 chr3R 18695753 18695754 chr3R 18695857 18695858 4 104 10.5 0.0 5.2 0.6 105 chr3R 18695753 3` UTR CG34282 + chr3R 18695806 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-502 2281 chr3R 18721038 18721052 chr3R 18721195 18721209 5 157 3.0 1.5 2.2 1.6 171 chr3R 18721038 intron Cha + chr3R 18721124 intron Cha + chr3R 18721209 intron Cha + chr3R_5_18720001 chr3R_18720001 RAL-502 2282 chr3R 18766756 18766806 chr3R 18766854 18766904 17 95 4.0 5.0 4.5 3.1 148 chr3R 18766756 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766904 intron CG7720 - chr3R_17_18765001 chr3R_18765001 RAL-502 2283 chr3R 18781677 18781727 chr3R 18781773 18781799 6 86 2.5 2.5 2.5 1.7 122 chr3R 18781677 intron CG7720 - chr3R 18781738 intron CG7720 - chr3R 18781799 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-502 2284 chr3R 18791496 18791519 chr3R 18791574 18791599 4 78 3.5 1.5 2.5 1.1 103 chr3R 18791496 intron CG7720 - chr3R 18791548 intron CG7720 - chr3R 18791599 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-502 2285 chr3R 18814187 18814211 chr3R 18814278 18814306 4 92 7.5 2.0 4.8 0.7 119 chr3R 18814187 intron CG18208 - chr3R 18814246 intron CG18208 - chr3R 18814306 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-502 2286 chr3R 18814215 18814232 chr3R 18814277 18814297 8 80 4.0 2.5 3.2 1.9 82 chr3R 18814215 intron CG18208 - chr3R 18814256 intron CG18208 - chr3R 18814297 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-502 2287 chr3R 18887587 18887599 chr3R 18887683 18887700 8 98 10.0 5.0 7.5 0.9 113 chr3R 18887587 intergenic not near genes chr3R 18887644 intergenic not near genes chr3R 18887700 intergenic not near genes chr3R_8_18885001 chr3R_18885001 RAL-502 2288 chr3R 18965869 18965918 chr3R 18966384 18966391 6 495 0.5 5.0 2.8 1.6 522 chr3R 18965869 intron,intron CG42613 +,CG43732 + chr3R 18966130 intron,intron CG42613 +,CG43732 + chr3R 18966391 intron,intron CG42613 +,CG43732 + chr3R_6_18965001 chr3R_18965001 RAL-502 2289 chr3R 19033909 19033925 chr3R 19034007 19034013 4 90 7.0 4.0 5.5 0.6 104 chr3R 19033909 intron CG6026 + chr3R 19033961 intron CG6026 + chr3R 19034013 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-502 2290 chr3R 19033928 19033959 chr3R 19034005 19034057 4 74 3.5 4.0 3.8 0.8 129 chr3R 19033928 intron CG6026 + chr3R 19033992 intron CG6026 + chr3R 19034057 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-502 2291 chr3R 19060015 19060052 chr3R 19060260 19060296 11 243 1.5 4.0 2.8 2.9 281 chr3R 19060015 intron cdi - chr3R 19060156 intron cdi - chr3R 19060296 intron cdi - chr3R_11_19060001 chr3R_19060001 RAL-502 2292 chr3R 19136406 19136441 chr3R 19139793 19139810 Bari1 5 3385 54.0 24.0 39.0 0.1 3404 chr3R 19136406 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139810 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-502 2293 chr3R 19140265 19140300 chr3R 19140710 19140753 13 451 3.5 3.5 3.5 2.9 488 chr3R 19140265 3` UTR Ppcs - chr3R 19140509 3` UTR Ppcs - chr3R 19140753 3` UTR Ppcs - chr3R_13_19140001 chr3R_19140001 RAL-502 2294 chr3R 19193003 19193011 chr3R 19197322 19197335 F-element 4 4322 0.0 8.5 4.2 0.8 4332 chr3R 19193003 intron CG31475 + chr3R 19195169 intron CG31475 + chr3R 19197335 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-502 2295 chr3R 19340378 19340425 chr3R 19340475 19340522 11 97 6.5 2.5 4.5 2.0 144 chr3R 19340378 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340522 intergenic not near genes chr3R_11_19340001 chr3R_19340001 RAL-502 2296 chr3R 19377418 19377447 chr3R 19377502 19377530 11 83 3.5 5.0 4.2 2.1 112 chr3R 19377418 intron Ino80 - chr3R 19377474 intron Ino80 - chr3R 19377530 intron Ino80 - chr3R_11_19375001 chr3R_19375001 RAL-502 2297 chr3R 19394935 19394965 chr3R 19395013 19395026 7 73 5.5 2.0 3.8 1.5 91 chr3R 19394935 intron,exon Ino80 -,CG3739 + chr3R 19394980 intron,exon Ino80 -,CG3739 + chr3R 19395026 intron,exon Ino80 -,CG3739 + chr3R_7_19390001 chr3R_19390001 RAL-502 2298 chr3R 19505933 19505964 chr3R 19506033 19506082 14 116 3.5 2.0 2.8 3.7 149 chr3R 19505933 exon Dys + chr3R 19506008 intron Dys + chr3R 19506082 intron Dys + chr3R_14_19505001 chr3R_19505001 RAL-502 2299 chr3R 19550051 19550099 chr3R 19550175 19550224 10 121 1.5 3.5 2.5 2.9 173 chr3R 19550051 intron Dys + chr3R 19550138 intron Dys + chr3R 19550224 intron Dys + chr3R_10_19550001 chr3R_19550001 RAL-502 2300 chr3R 19602549 19602594 chr3R 19602649 19602694 6 100 3.0 2.0 2.5 1.7 145 chr3R 19602549 exon CG7333 + chr3R 19602622 3` UTR CG7333 + chr3R 19602694 intergenic CG7333 + chr3R_6_19600001 chr3R_19600001 RAL-502 2301 chr3R 19633273 19633318 chr3R 19633379 19633407 4 102 0.5 0.5 0.5 2.7 134 chr3R 19633273 intergenic subdued - chr3R 19633340 intergenic subdued - chr3R 19633407 intergenic subdued - chr3R_4_19630001 chr3R_19630001 RAL-502 2302 chr3R 19783007 19783036 chr3R 19783144 19783173 7 135 3.5 2.5 3.0 1.8 166 chr3R 19783007 exon CG11407 + chr3R 19783090 3` UTR CG11407 + chr3R 19783173 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-502 2303 chr3R 19830872 19830883 chr3R 19830969 19830980 6 97 0.5 7.5 4.0 1.2 108 chr3R 19830872 intron bnl - chr3R 19830926 intron bnl - chr3R 19830980 intron bnl - chr3R_6_19830001 chr3R_19830001 RAL-502 2304 chr3R 19839514 19839556 chr3R 19839760 19839808 9 250 6.0 5.0 5.5 1.4 294 chr3R 19839514 intergenic not near genes chr3R 19839661 intergenic not near genes chr3R 19839808 intergenic not near genes chr3R_9_19835001 chr3R_19835001 RAL-502 2305 chr3R 19846939 19846969 chr3R 19847119 19847149 8 180 4.5 5.0 4.8 1.4 210 chr3R 19846939 intergenic CG4662 + chr3R 19847044 intergenic CG4662 + chr3R 19847149 intergenic CG4662 + chr3R_8_19845001 chr3R_19845001 RAL-502 2306 chr3R 19944146 19944195 chr3R 19944335 19944364 20 187 3.5 4.5 4.0 4.0 218 chr3R 19944146 intron Hs6st - chr3R 19944255 intron Hs6st - chr3R 19944364 intron Hs6st - chr3R_20_19940001 chr3R_19940001 RAL-502 2307 chr3R 19945961 19946002 chr3R 19946078 19946125 12 119 6.5 4.5 5.5 1.8 164 chr3R 19945961 intron Hs6st - chr3R 19946043 intron Hs6st - chr3R 19946125 intron Hs6st - chr3R_12_19945001 chr3R_19945001 RAL-502 2308 chr3R 19950013 19950059 chr3R 19950109 19950157 19 96 4.0 3.5 3.8 4.0 144 chr3R 19950013 intron Hs6st - chr3R 19950085 intron Hs6st - chr3R 19950157 intron Hs6st - chr3R_19_19950001 chr3R_19950001 RAL-502 2309 chr3R 19953940 19953968 chr3R 19954028 19954031 5 86 8.0 5.0 6.5 0.7 91 chr3R 19953940 intron Hs6st - chr3R 19953986 intron Hs6st - chr3R 19954031 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-502 2310 chr3R 19989822 19989877 chr3R 19989922 19989952 11 83 8.5 3.0 5.8 1.6 130 chr3R 19989822 intron Hs6st - chr3R 19989887 intron Hs6st - chr3R 19989952 intron Hs6st - chr3R_11_19985001 chr3R_19985001 RAL-502 2311 chr3R 20060612 20060655 chr3R 20060715 20060758 13 97 6.0 2.5 4.2 2.5 146 chr3R 20060612 intergenic not near genes chr3R 20060685 intergenic not near genes chr3R 20060758 intergenic not near genes chr3R_13_20060001 chr3R_20060001 RAL-502 2312 chr3R 20109522 20109551 chr3R 20114748 20114776 copia 12 5226 5.0 6.0 5.5 1.8 5254 chr3R 20109522 intergenic not near genes chr3R 20112149 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_12_20110001 chr3R_20110001 RAL-502 2313 chr3R 20109557 20109567 chr3R 20114743 20114792 copia 5 5218 4.0 6.0 5.0 0.8 5235 chr3R 20109557 intergenic not near genes chr3R 20112174 intergenic not near genes chr3R 20114792 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-502 2314 chr3R 20156696 20156713 chr3R 20165869 20165878 roo 5 9178 9.0 7.0 8.0 0.6 9182 chr3R 20156696 intergenic not near genes chr3R 20161287 intergenic not near genes chr3R 20165878 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-502 2315 chr3R 20180706 20180719 chr3R 20180811 20180824 5 104 3.0 4.5 3.8 1.0 118 chr3R 20180706 intergenic not near genes chr3R 20180765 intergenic not near genes chr3R 20180824 intergenic not near genes chr3R_5_20180001 chr3R_20180001 RAL-502 2316 chr3R 20205399 20205596 chr3R 20205522 20205738 16 131 1.5 2.5 2.0 5.3 339 chr3R 20205399 intron Nlg4 + chr3R 20205568 intron Nlg4 + chr3R 20205738 intron Nlg4 + chr3R_16_20205001 chr3R_20205001 RAL-502 2317 chr3R 20245266 20245301 chr3R 20248893 20248930 F-element 4 3629 2.0 1.0 1.5 1.6 3664 chr3R 20245266 3` UTR Nlg4 + chr3R 20247098 intergenic not near genes chr3R 20248930 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-502 2318 chr3R 20252232 20252252 chr3R 20252330 20252350 4 98 0.0 0.0 0.0 4.0 118 chr3R 20252232 intergenic not near genes chr3R 20252291 intergenic cic + chr3R 20252350 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-502 2319 chr3R 20256846 20256867 chr3R 20256944 20256965 4 96 0.0 7.0 3.5 0.9 119 chr3R 20256846 intron cic + chr3R 20256906 intron cic + chr3R 20256965 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-502 2320 chr3R 20266504 20266542 chr3R 20272995 20273033 Burdock 10 6491 6.5 4.5 5.5 1.5 6529 chr3R 20266504 intron cic + chr3R 20269768 intron cic + chr3R 20273033 intron cic + chr3R_10_20265001 chr3R_20265001 RAL-502 2321 chr3R 20282258 20282302 chr3R 20282354 20282398 5 96 0.5 3.5 2.0 1.7 140 chr3R 20282258 intron cic + chr3R 20282328 intron cic + chr3R 20282398 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-502 2322 chr3R 20330980 20331026 chr3R 20331486 20331532 roo 7 506 3.5 1.0 2.2 2.2 552 chr3R 20330980 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331532 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-502 2323 chr3R 20368468 20368506 chr3R 20368567 20368602 6 99 0.0 2.5 1.2 2.7 134 chr3R 20368468 intergenic not near genes chr3R 20368535 intergenic not near genes chr3R 20368602 intergenic not near genes chr3R_6_20365001 chr3R_20365001 RAL-502 2324 chr3R 20506571 20506605 chr3R 20507393 20507427 BS 10 822 0.0 9.0 4.5 1.8 856 chr3R 20506571 intergenic Or92a + chr3R 20506999 intergenic CG4288 - chr3R 20507427 3` UTR CG4288 - chr3R_10_20505001 chr3R_20505001 RAL-502 2325 chr3R 20516522 20516572 chr3R 20516898 20516949 14 374 4.0 4.5 4.2 2.7 427 chr3R 20516522 intergenic not near genes chr3R 20516736 intergenic not near genes chr3R 20516949 intergenic not near genes chr3R_14_20515001 chr3R_20515001 RAL-502 2326 chr3R 20594463 20594510 chr3R 20594573 20594619 7 109 1.5 0.0 0.8 3.9 156 chr3R 20594463 intron bon + chr3R 20594541 intron bon + chr3R 20594619 intron bon + chr3R_7_20590001 chr3R_20590001 RAL-502 2327 chr3R 20596175 20596189 chr3R 20596282 20596295 8 106 4.0 4.0 4.0 1.6 120 chr3R 20596175 intron bon + chr3R 20596235 intron bon + chr3R 20596295 intron bon + chr3R_8_20595001 chr3R_20595001 RAL-502 2328 chr3R 20686957 20686964 chr3R 20687411 20687419 4 455 9.0 6.0 7.5 0.5 462 chr3R 20686957 intergenic not near genes chr3R 20687188 intergenic not near genes chr3R 20687419 intergenic not near genes chr3R_4_20685001 chr3R_20685001 RAL-502 2329 chr3R 20686969 20686991 chr3R 20687404 20687442 11 446 3.0 6.0 4.5 2.0 473 chr3R 20686969 intergenic not near genes chr3R 20687206 intergenic not near genes chr3R 20687442 intergenic not near genes chr3R_11_20685001 chr3R_20685001 RAL-502 2330 chr3R 20707730 20707767 chr3R 20707961 20707999 11 234 3.5 3.5 3.5 2.4 269 chr3R 20707730 intron Oamb - chr3R 20707864 intron Oamb - chr3R 20707999 intron Oamb - chr3R_11_20705001 chr3R_20705001 RAL-502 2331 chr3R 20722834 20722848 chr3R 20722981 20722995 5 146 13.0 4.0 8.5 0.5 161 chr3R 20722834 intergenic not near genes chr3R 20722914 intergenic not near genes chr3R 20722995 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-502 2332 chr3R 20730918 20731059 chr3R 20731038 20731167 8 111 0.0 0.0 0.0 8.0 249 chr3R 20730918 intergenic not near genes chr3R 20731042 intergenic not near genes chr3R 20731167 intergenic CG31205 + chr3R_8_20730001 chr3R_20730001 RAL-502 2333 chr3R 20731679 20731690 chr3R 20731956 20731968 5 276 3.0 6.5 4.8 0.9 289 chr3R 20731679 exon CG31205 + chr3R 20731824 exon CG31205 + chr3R 20731968 exon CG31205 + chr3R_5_20730001 chr3R_20730001 RAL-502 2334 chr3R 20733752 20733762 chr3R 20733858 20733864 5 109 13.0 6.5 9.8 0.5 112 chr3R 20733752 intergenic not near genes chr3R 20733808 intergenic not near genes chr3R 20733864 intergenic not near genes chr3R_5_20730001 chr3R_20730001 RAL-502 2335 chr3R 20733767 20733793 chr3R 20733852 20733879 9 90 5.0 5.5 5.2 1.5 112 chr3R 20733767 intergenic not near genes chr3R 20733823 intergenic not near genes chr3R 20733879 intergenic not near genes chr3R_9_20730001 chr3R_20730001 RAL-502 2336 chr3R 20771711 20771727 chr3R 20771810 20771825 5 99 0.0 9.5 4.8 0.9 114 chr3R 20771711 intron,intron Syp +,Takl1 - chr3R 20771768 intron,intron Syp +,Takl1 - chr3R 20771825 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-502 2337 chr3R 20787417 20787453 chr3R 20787528 20787561 8 109 7.5 2.5 5.0 1.3 144 chr3R 20787417 intron Syp + chr3R 20787489 intron Syp + chr3R 20787561 intron Syp + chr3R_8_20785001 chr3R_20785001 RAL-502 2338 chr3R 20801123 20801164 chr3R 20801220 20801261 6 96 1.0 3.5 2.2 1.9 138 chr3R 20801123 intron Syp + chr3R 20801192 intron Syp + chr3R 20801261 intron Syp + chr3R_6_20800001 chr3R_20800001 RAL-502 2339 chr3R 20806951 20806988 chr3R 20807078 20807116 10 136 4.0 4.5 4.2 1.9 165 chr3R 20806951 3` UTR Syp + chr3R 20807034 3` UTR Syp + chr3R 20807116 3` UTR Syp + chr3R_10_20805001 chr3R_20805001 RAL-502 2340 chr3R 20850082 20850112 chr3R 20850187 20850216 6 105 0.0 1.0 0.5 4.0 134 chr3R 20850082 intergenic RpS30 + chr3R 20850149 intergenic RpS30 + chr3R 20850216 intergenic RpS30 + chr3R_6_20850001 chr3R_20850001 RAL-502 2341 chr3R 20900535 20900562 chr3R 20900618 20900663 9 98 5.0 1.0 3.0 2.2 128 chr3R 20900535 intergenic not near genes chr3R 20900599 intergenic not near genes chr3R 20900663 intergenic not near genes chr3R_9_20900001 chr3R_20900001 RAL-502 2342 chr3R 20916308 20916356 chr3R 20916466 20916515 17 153 2.0 4.5 3.2 4.0 207 chr3R 20916308 intron,intron CG31191 -,hdly + chr3R 20916412 intron,intron CG31191 -,hdly + chr3R 20916515 intron,intron CG31191 -,hdly + chr3R_17_20915001 chr3R_20915001 RAL-502 2343 chr3R 21015250 21015296 chr3R 21015357 21015403 14 106 4.0 8.5 6.2 1.9 153 chr3R 21015250 3` UTR Calx + chr3R 21015326 3` UTR Calx + chr3R 21015403 3` UTR Calx + chr3R_14_21015001 chr3R_21015001 RAL-502 2344 chr3R 21049163 21049203 chr3R 21049316 21049355 7 153 3.0 1.5 2.2 2.2 192 chr3R 21049163 intergenic CG7079 - chr3R 21049259 intergenic CG7079 - chr3R 21049355 intergenic not near genes chr3R_7_21045001 chr3R_21045001 RAL-502 2345 chr3R 21108020 21108041 chr3R 21108301 21108322 5 280 5.5 2.0 3.8 1.0 302 chr3R 21108020 intergenic Sec15 -,rtet + chr3R 21108171 intergenic Sec15 -,rtet + chr3R 21108322 intergenic rtet +,Sec15 - chr3R_5_21105001 chr3R_21105001 RAL-502 2346 chr3R 21141669 21141702 chr3R 21150153 21150160 Tirant 4 8474 6.5 1.5 4.0 0.8 8491 chr3R 21141669 intron SNF4Agamma + chr3R 21145914 intron SNF4Agamma + chr3R 21150160 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-502 2347 chr3R 21154530 21154585 chr3R 21154755 21154820 15 233 3.0 0.0 1.5 6.0 290 chr3R 21154530 intron SNF4Agamma + chr3R 21154675 intron SNF4Agamma + chr3R 21154820 intron SNF4Agamma + chr3R_15_21150001 chr3R_21150001 RAL-502 2348 chr3R 21385925 21385948 chr3R 21386016 21386045 5 91 4.0 3.5 3.8 1.0 120 chr3R 21385925 intergenic not near genes chr3R 21385985 intergenic not near genes chr3R 21386045 intergenic not near genes chr3R_5_21385001 chr3R_21385001 RAL-502 2349 chr3R 21392484 21392511 chr3R 21392792 21392825 6 312 4.5 6.0 5.2 1.0 341 chr3R 21392484 intergenic not near genes chr3R 21392654 intergenic not near genes chr3R 21392825 intergenic not near genes chr3R_6_21390001 chr3R_21390001 RAL-502 2350 chr3R 21464385 21464427 chr3R 21464491 21464531 5 104 0.0 1.0 0.5 3.3 146 chr3R 21464385 intergenic not near genes chr3R 21464458 intergenic not near genes chr3R 21464531 intergenic not near genes chr3R_5_21460001 chr3R_21460001 RAL-502 2351 chr3R 21472004 21472009 chr3R 21472103 21472108 4 99 8.5 6.0 7.2 0.5 104 chr3R 21472004 intergenic not near genes chr3R 21472056 intergenic not near genes chr3R 21472108 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-502 2352 chr3R 21481366 21481372 chr3R 21481477 21481482 5 110 11.5 0.0 5.8 0.7 116 chr3R 21481366 intergenic not near genes chr3R 21481424 intergenic not near genes chr3R 21481482 intergenic not near genes chr3R_5_21480001 chr3R_21480001 RAL-502 2353 chr3R 21518255 21518270 chr3R 21518347 21518374 4 98 0.0 5.0 2.5 1.1 119 chr3R 21518255 intergenic not near genes chr3R 21518314 intergenic not near genes chr3R 21518374 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-502 2354 chr3R 21519972 21520125 chr3R 21520093 21520239 9 117 0.0 0.0 0.0 9.0 267 chr3R 21519972 intergenic not near genes chr3R 21520106 intergenic not near genes chr3R 21520239 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-502 2355 chr3R 21569820 21569872 chr3R 21569921 21569973 16 97 1.5 2.5 2.0 5.3 153 chr3R 21569820 intergenic InR - chr3R 21569896 intergenic InR - chr3R 21569973 intergenic InR - chr3R_16_21565001 chr3R_21565001 RAL-502 2356 chr3R 21595646 21595691 chr3R 21595911 21595965 13 262 2.5 5.5 4.0 2.6 319 chr3R 21595646 intron InR - chr3R 21595806 intron InR - chr3R 21595965 intron InR - chr3R_13_21595001 chr3R_21595001 RAL-502 2357 chr3R 21608992 21609039 chr3R 21611645 21611686 NOF 9 2643 5.5 5.5 5.5 1.4 2694 chr3R 21608992 intron InR - chr3R 21610339 intron InR - chr3R 21611686 intron InR - chr3R_9_21610001 chr3R_21610001 RAL-502 2358 chr3R 21761114 21761138 chr3R 21768526 21768543 mdg1 6 7410 8.5 8.5 8.5 0.6 7429 chr3R 21761114 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-502 2359 chr3R 21761141 21761154 chr3R 21768517 21768541 mdg1 5 7377 4.0 5.5 4.8 0.9 7400 chr3R 21761141 exon CG42335 + chr3R 21764841 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-502 2360 chr3R 21817425 21817467 chr3R 21817655 21817696 4 229 1.0 0.0 0.5 2.7 271 chr3R 21817425 exon CASK - chr3R 21817560 intron CASK - chr3R 21817696 intron CASK - chr3R_4_21815001 chr3R_21815001 RAL-502 2361 chr3R 17389054 17389054 chr3R 21907534 21907534 9 4518480 14.0 25.0 19.5 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_9_19645001 chr3R_19645001 RAL-502 2362 chr3R 19457913 19457919 chr3R 21907534 21907534 5 2449617 11.0 25.0 18.0 0.3 2449621 chr3R 19457913 3` UTR CG31221 + chr3R 20682724 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-502 2363 chr3R 21337429 21337429 chr3R 21907534 21907534 8 570105 8.0 25.0 16.5 0.5 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_8_21620001 chr3R_21620001 RAL-502 2364 chr3R 21907534 21907534 chr3R 28831801 28831804 30 6924268 26.5 21.5 24.0 1.2 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-502 2365 chr3R 21907534 21907534 chr3R 29013340 29013341 4 7105806 26.5 27.5 27.0 0.1 7105807 chr3R 21907534 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013341 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-502 2366 chr3R 17389054 17389054 chr3R 21907535 21907535 6 4518481 14.0 25.0 19.5 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-502 2367 chr3R 19457914 19457915 chr3R 21907535 21907535 5 2449620 12.0 25.0 18.5 0.3 2449621 chr3R 19457914 3` UTR CG31221 + chr3R 20682724 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-502 2368 chr3R 20177844 20177845 chr3R 21907535 21907535 6 1729690 9.0 25.0 17.0 0.3 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_6_21040001 chr3R_21040001 RAL-502 2369 chr3R 21907535 21907535 chr3R 28831801 28831803 33 6924267 26.0 21.5 23.8 1.3 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-502 2370 chr3R 21907535 21907535 chr3R 29013339 29013340 6 7105805 26.0 27.5 26.8 0.2 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-502 2371 chr3R 17389054 17389054 chr3R 21907536 21907536 8 4518482 14.0 25.0 19.5 0.4 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_8_19645001 chr3R_19645001 RAL-502 2372 chr3R 20177845 20177845 chr3R 21907536 21907536 8 1729691 9.0 25.0 17.0 0.4 1729691 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907536 intergenic CG6678 + chr3R_8_21040001 chr3R_21040001 RAL-502 2373 chr3R 21907536 21907536 chr3R 27586204 27586204 5 5678668 26.0 16.0 21.0 0.2 5678668 chr3R 21907536 intergenic CG6678 + chr3R 24746870 exon tok + chr3R 27586204 3` UTR raps + chr3R_5_24745001 chr3R_24745001 RAL-502 2374 chr3R 21907536 21907536 chr3R 28831801 28831804 43 6924266 26.0 21.5 23.8 1.7 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-502 2375 chr3R 21907536 21907536 chr3R 29013340 29013340 13 7105804 26.0 27.5 26.8 0.5 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_13_25460001 chr3R_25460001 RAL-502 2376 chr3R 21937210 21937233 chr3R 21937307 21937329 8 97 4.5 5.5 5.0 1.3 119 chr3R 21937210 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937329 intergenic not near genes chr3R_8_21935001 chr3R_21935001 RAL-502 2377 chr3R 22013050 22013083 chr3R 22013136 22013184 5 98 3.0 3.0 3.0 1.2 134 chr3R 22013050 intergenic not near genes chr3R 22013117 intergenic not near genes chr3R 22013184 intergenic not near genes chr3R_5_22010001 chr3R_22010001 RAL-502 2378 chr3R 22055558 22055589 chr3R 22055752 22055797 10 203 1.0 5.0 3.0 2.5 239 chr3R 22055558 intron how + chr3R 22055678 intron how + chr3R 22055797 intron how + chr3R_10_22055001 chr3R_22055001 RAL-502 2379 chr3R 22175648 22175681 chr3R 22175983 22176018 8 335 1.0 5.5 3.2 1.9 370 chr3R 22175648 intron SKIP + chr3R 22175833 intron SKIP + chr3R 22176018 intron SKIP + chr3R_8_22175001 chr3R_22175001 RAL-502 2380 chr3R 22190807 22190855 chr3R 22190905 22190953 12 93 6.0 3.0 4.5 2.2 146 chr3R 22190807 intron SKIP + chr3R 22190880 intron SKIP + chr3R 22190953 intron SKIP + chr3R_12_22190001 chr3R_22190001 RAL-502 2381 chr3R 22234081 22234098 chr3R 22234177 22234195 9 96 1.0 8.0 4.5 1.6 114 chr3R 22234081 intron SKIP + chr3R 22234138 intron SKIP + chr3R 22234195 intron SKIP + chr3R_9_22230001 chr3R_22230001 RAL-502 2382 chr3R 22328894 22328944 chr3R 22331573 22331623 12 2680 32.5 46.0 39.2 0.3 2729 chr3R 22328894 intergenic CG7080 + chr3R 22330258 exon CG7080 + chr3R 22331623 intron CG33721 + chr3R_12_22330001 chr3R_22330001 RAL-502 2383 chr3R 22336075 22336112 chr3R 22336189 22336218 5 112 5.0 1.5 3.2 1.2 143 chr3R 22336075 intron CG5388 - chr3R 22336146 intron CG5388 - chr3R 22336218 intron CG5388 - chr3R_5_22335001 chr3R_22335001 RAL-502 2384 chr3R 22336910 22336923 chr3R 22337012 22337023 4 102 0.5 3.5 2.0 1.3 113 chr3R 22336910 intron CG5388 - chr3R 22336966 intron CG5388 - chr3R 22337023 intron CG5388 - chr3R_4_22335001 chr3R_22335001 RAL-502 2385 chr3R 22433087 22433094 chr3R 22433190 22433213 4 111 13.0 8.5 10.8 0.3 126 chr3R 22433087 intron CG13847 - chr3R 22433150 intron CG13847 - chr3R 22433213 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-502 2386 chr3R 22450533 22450548 chr3R 22453187 22453190 NOF 5 2654 9.0 6.5 7.8 0.6 2657 chr3R 22450533 intron CG34376 + chr3R 22451862 intron CG34376 + chr3R 22453190 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-502 2387 chr3R 22450549 22450578 chr3R 22453181 22453238 NOF 12 2650 5.0 6.0 5.5 1.8 2689 chr3R 22450549 intron CG34376 + chr3R 22451894 intron CG34376 + chr3R 22453238 intron CG34376 + chr3R_12_22450001 chr3R_22450001 RAL-502 2388 chr3R 22507772 22507798 chr3R 22507874 22507900 4 103 6.0 9.5 7.8 0.5 128 chr3R 22507772 intron Octbeta1R + chr3R 22507836 intron Octbeta1R + chr3R 22507900 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-502 2389 chr3R 22507799 22507816 chr3R 22507871 22507919 4 96 2.5 7.5 5.0 0.7 120 chr3R 22507799 intron Octbeta1R + chr3R 22507859 intron Octbeta1R + chr3R 22507919 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-502 2390 chr3R 22538442 22538473 chr3R 22538529 22538575 13 98 2.5 4.5 3.5 2.9 133 chr3R 22538442 intron CG5326 - chr3R 22538508 intron CG5326 - chr3R 22538575 intron CG5326 - chr3R_13_22535001 chr3R_22535001 RAL-502 2391 chr3R 22632106 22632130 chr3R 22632207 22632233 11 100 0.0 0.0 0.0 11.0 127 chr3R 22632106 intron loco - chr3R 22632170 intron loco - chr3R 22632233 intron loco - chr3R_11_22630001 chr3R_22630001 RAL-502 2392 chr3R 22672283 22672328 chr3R 22672396 22672437 5 112 0.5 1.5 1.0 2.5 154 chr3R 22672283 intron wake + chr3R 22672360 intron wake + chr3R 22672437 intron wake + chr3R_5_22670001 chr3R_22670001 RAL-502 2393 chr3R 22794260 22794297 chr3R 22794506 22794543 9 245 1.5 2.5 2.0 3.0 283 chr3R 22794260 intergenic CG7029 + chr3R 22794402 intergenic CG7029 + chr3R 22794543 intergenic not near genes chr3R_9_22790001 chr3R_22790001 RAL-502 2394 chr3R 22803449 22803464 chr3R 22803630 22803674 6 200 6.5 8.0 7.2 0.7 225 chr3R 22803449 intergenic not near genes chr3R 22803562 intergenic not near genes chr3R 22803674 intergenic not near genes chr3R_6_22800001 chr3R_22800001 RAL-502 2395 chr3R 22835806 22835840 chr3R 22835908 22835940 19 99 5.5 6.0 5.8 2.8 134 chr3R 22835806 intergenic not near genes chr3R 22835873 intergenic not near genes chr3R 22835940 intergenic not near genes chr3R_19_22835001 chr3R_22835001 RAL-502 2396 chr3R 22842370 22842418 chr3R 22842489 22842535 16 115 2.5 3.0 2.8 4.2 165 chr3R 22842370 intergenic not near genes chr3R 22842452 intergenic not near genes chr3R 22842535 intergenic not near genes chr3R_16_22840001 chr3R_22840001 RAL-502 2397 chr3R 22853273 22853294 chr3R 22853369 22853391 8 97 13.0 7.5 10.2 0.7 118 chr3R 22853273 intergenic not near genes chr3R 22853332 intergenic not near genes chr3R 22853391 intergenic not near genes chr3R_8_22850001 chr3R_22850001 RAL-502 2398 chr3R 22860133 22860175 chr3R 22860244 22860281 18 111 3.0 2.0 2.5 5.1 148 chr3R 22860133 intergenic not near genes chr3R 22860207 intergenic not near genes chr3R 22860281 intergenic not near genes chr3R_18_22860001 chr3R_22860001 RAL-502 2399 chr3R 22880914 22880956 chr3R 22881072 22881114 11 158 3.5 2.5 3.0 2.8 200 chr3R 22880914 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881114 intergenic not near genes chr3R_11_22880001 chr3R_22880001 RAL-502 2400 chr3R 22881187 22881227 chr3R 22884913 22884951 Doc 11 3723 2.0 4.0 3.0 2.8 3764 chr3R 22881187 intergenic not near genes chr3R 22883069 intergenic not near genes chr3R 22884951 intergenic not near genes chr3R_11_22880001 chr3R_22880001 RAL-502 2401 chr3R 22927680 22927721 chr3R 22927779 22927825 8 96 6.0 5.5 5.8 1.2 145 chr3R 22927680 intron klg + chr3R 22927752 intron klg + chr3R 22927825 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-502 2402 chr3R 22935465 22935492 chr3R 22935552 22935593 4 93 5.0 10.5 7.8 0.5 128 chr3R 22935465 intron klg + chr3R 22935529 intron klg + chr3R 22935593 intron klg + chr3R_4_22935001 chr3R_22935001 RAL-502 2403 chr3R 22954312 22954355 chr3R 22954408 22954420 14 87 6.5 5.5 6.0 2.0 108 chr3R 22954312 intron klg + chr3R 22954366 intron klg + chr3R 22954420 intron klg + chr3R_14_22950001 chr3R_22950001 RAL-502 2404 chr3R 22974268 22974306 chr3R 22974372 22974410 9 102 0.0 3.0 1.5 3.6 142 chr3R 22974268 intergenic not near genes chr3R 22974339 intergenic not near genes chr3R 22974410 intergenic not near genes chr3R_9_22970001 chr3R_22970001 RAL-502 2405 chr3R 22993496 22993531 chr3R 22993651 22993686 5 150 5.5 4.5 5.0 0.8 190 chr3R 22993496 intron Nha2 - chr3R 22993591 intron Nha2 - chr3R 22993686 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-502 2406 chr3R 23011355 23011408 chr3R 23011471 23011523 11 115 2.0 4.0 3.0 2.8 168 chr3R 23011355 intergenic not near genes chr3R 23011439 intergenic CR44225 - chr3R 23011523 intergenic CR44225 - chr3R_11_23010001 chr3R_23010001 RAL-502 2407 chr3R 23064174 23064201 chr3R 23064282 23064295 11 116 4.0 3.5 3.8 2.3 121 chr3R 23064174 exon CG17111 - chr3R 23064234 intron CG17111 - chr3R 23064295 exon CG17111 - chr3R_11_23060001 chr3R_23060001 RAL-502 2408 chr3R 23220987 23221034 chr3R 23221155 23221198 19 168 5.0 4.5 4.8 3.3 211 chr3R 23220987 intron cnc - chr3R 23221092 intron cnc - chr3R 23221198 intron cnc - chr3R_19_23220001 chr3R_23220001 RAL-502 2409 chr3R 23245972 23246014 chr3R 23246074 23246112 11 97 3.5 3.5 3.5 2.4 140 chr3R 23245972 intron CG4467 - chr3R 23246042 intron CG4467 - chr3R 23246112 intron CG4467 - chr3R_11_23245001 chr3R_23245001 RAL-502 2410 chr3R 23291238 23291283 chr3R 23291334 23291361 10 97 2.5 2.0 2.2 3.1 123 chr3R 23291238 3` UTR pnt - chr3R 23291300 3` UTR pnt - chr3R 23291361 3` UTR pnt - chr3R_10_23290001 chr3R_23290001 RAL-502 2411 chr3R 23311667 23311696 chr3R 23311781 23311804 5 112 7.0 4.5 5.8 0.7 137 chr3R 23311667 intron pnt - chr3R 23311736 intron pnt - chr3R 23311804 intron pnt - chr3R_5_23310001 chr3R_23310001 RAL-502 2412 chr3R 23335413 23335461 chr3R 23335511 23335558 12 95 4.0 3.5 3.8 2.5 145 chr3R 23335413 intron pnt - chr3R 23335486 intron pnt - chr3R 23335558 intron pnt - chr3R_12_23335001 chr3R_23335001 RAL-502 2413 chr3R 23356985 23356997 chr3R 23357090 23357090 4 102 8.0 5.0 6.5 0.5 105 chr3R 23356985 intron Sec13 + chr3R 23357038 intron Sec13 + chr3R 23357090 intron Sec13 + chr3R_4_23355001 chr3R_23355001 RAL-502 2414 chr3R 23360175 23360200 chr3R 23360270 23360296 5 95 0.0 4.0 2.0 1.7 121 chr3R 23360175 3` UTR RpS3 + chr3R 23360236 intergenic RpS3 + chr3R 23360296 intergenic RpS3 + chr3R_5_23360001 chr3R_23360001 RAL-502 2415 chr3R 23390945 23390954 chr3R 23391047 23391056 5 102 3.5 0.0 1.8 1.8 111 chr3R 23390945 intergenic CR43387 + chr3R 23391000 intergenic CR43387 + chr3R 23391056 intergenic CR43387 + chr3R_5_23390001 chr3R_23390001 RAL-502 2416 chr3R 23558379 23558418 chr3R 23560180 23560208 Bari1 10 1799 5.0 3.5 4.2 1.9 1829 chr3R 23558379 intron beat-IV + chr3R 23559294 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-502 2417 chr3R 23564420 23564471 chr3R 23564584 23564631 11 160 3.5 1.5 2.5 3.1 211 chr3R 23564420 intron beat-IV + chr3R 23564526 intron beat-IV + chr3R 23564631 intron beat-IV + chr3R_11_23560001 chr3R_23560001 RAL-502 2418 chr3R 23624847 23624892 chr3R 23624961 23625007 10 113 2.5 3.0 2.8 2.6 160 chr3R 23624847 intron CG31145 - chr3R 23624927 intron CG31145 - chr3R 23625007 intron CG31145 - chr3R_10_23620001 chr3R_23620001 RAL-502 2419 chr3R 23684682 23684727 chr3R 23685188 23685210 roo 8 491 3.5 7.0 5.2 1.3 528 chr3R 23684682 exon CG18754 + chr3R 23684946 intron CG18754 + chr3R 23685210 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-502 2420 chr3R 23784893 23785190 chr3R 23784991 23785287 15 91 6.0 9.0 7.5 1.8 394 chr3R 23784893 intron mbc + chr3R 23785090 intron mbc + chr3R 23785287 intron mbc + chr3R_15_23785001 chr3R_23785001 RAL-502 2421 chr3R 23820634 23820667 chr3R 23820738 23820754 8 101 4.0 7.0 5.5 1.2 120 chr3R 23820634 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820754 5` UTR CG34355 + chr3R_8_23820001 chr3R_23820001 RAL-502 2422 chr3R 23835388 23835403 chr3R 23844558 23844573 roo 7 9169 8.0 0.5 4.2 1.3 9185 chr3R 23835388 intron CG34355 + chr3R 23839980 intron CG34355 + chr3R 23844573 intron CG34355 + chr3R_7_23835001 chr3R_23835001 RAL-502 2423 chr3R 23851071 23851088 chr3R 23858758 23858775 opus 4 7686 0.0 4.0 2.0 1.3 7704 chr3R 23851071 3` UTR CG34355 + chr3R 23854923 intergenic not near genes chr3R 23858775 intergenic not near genes chr3R_4_23850001 chr3R_23850001 RAL-502 2424 chr3R 23944890 23944933 chr3R 23944995 23945038 23 103 3.5 6.0 4.8 4.0 148 chr3R 23944890 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945038 exon CG12268 - chr3R_23_23940001 chr3R_23940001 RAL-502 2425 chr3R 23949020 23949069 chr3R 23949117 23949166 14 96 5.0 3.5 4.2 2.7 146 chr3R 23949020 intergenic not near genes chr3R 23949093 intergenic not near genes chr3R 23949166 intergenic not near genes chr3R_14_23945001 chr3R_23945001 RAL-502 2426 chr3R 24011658 24011680 chr3R 24011752 24011783 5 101 2.5 3.0 2.8 1.3 125 chr3R 24011658 intron KrT95D - chr3R 24011720 intron KrT95D - chr3R 24011783 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-502 2427 chr3R 24072072 24072119 chr3R 24072527 24072575 jockey 8 447 4.0 0.0 2.0 2.7 503 chr3R 24072072 intron 4EHP - chr3R 24072324 intron 4EHP - chr3R 24072575 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-502 2428 chr3R 24076903 24076939 chr3R 24078387 24078416 hobo 10 1484 6.0 4.0 5.0 1.7 1513 chr3R 24076903 intron 4EHP - chr3R 24077660 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-502 2429 chr3R 24076941 24076947 chr3R 24078383 24078434 hobo 5 1467 5.0 3.0 4.0 1.0 1493 chr3R 24076941 intron 4EHP - chr3R 24077688 intron 4EHP - chr3R 24078434 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-502 2430 chr3R 24116417 24116424 chr3R 24116514 24116522 4 98 2.0 2.0 2.0 1.3 105 chr3R 24116417 intron Rootletin + chr3R 24116470 intron Rootletin + chr3R 24116522 intron Rootletin + chr3R_4_24115001 chr3R_24115001 RAL-502 2431 chr3R 24199717 24199770 chr3R 24199817 24199870 16 95 3.5 4.5 4.0 3.2 153 chr3R 24199717 intron twin - chr3R 24199794 intron twin - chr3R 24199870 intron twin - chr3R_16_24195001 chr3R_24195001 RAL-502 2432 chr3R 24207210 24207237 chr3R 24212306 24212331 flea 11 5095 5.0 13.5 9.2 1.1 5121 chr3R 24207210 intron twin - chr3R 24209770 intron twin - chr3R 24212331 intron twin - chr3R_11_24205001 chr3R_24205001 RAL-502 2433 chr3R 24288240 24288282 chr3R 24288429 24288476 12 192 2.5 4.5 3.5 2.7 236 chr3R 24288240 3` UTR CG6356 + chr3R 24288358 3` UTR CG6356 + chr3R 24288476 3` UTR CG6356 + chr3R_12_24285001 chr3R_24285001 RAL-502 2434 chr3R 21907534 21907536 chr3R 24389465 24389465 4 2481930 26.0 13.0 19.5 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-502 2435 chr3R 24431579 24431623 chr3R 24431678 24431722 9 99 7.0 0.0 3.5 2.0 143 chr3R 24431579 intron nAChRalpha1 - chr3R 24431650 intron nAChRalpha1 - chr3R 24431722 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-502 2436 chr3R 24433468 24433504 chr3R 24433555 24433603 16 96 3.5 6.0 4.8 2.8 135 chr3R 24433468 intron nAChRalpha1 - chr3R 24433536 intron nAChRalpha1 - chr3R 24433603 intron nAChRalpha1 - chr3R_16_24430001 chr3R_24430001 RAL-502 2437 chr3R 24441612 24441635 chr3R 24441914 24441937 4 302 5.0 5.0 5.0 0.7 325 chr3R 24441612 intron nAChRalpha1 - chr3R 24441774 intron nAChRalpha1 - chr3R 24441937 intron nAChRalpha1 - chr3R_4_24440001 chr3R_24440001 RAL-502 2438 chr3R 24466447 24466497 chr3R 24466542 24466595 12 98 4.5 3.5 4.0 2.4 148 chr3R 24466447 intergenic not near genes chr3R 24466521 intergenic not near genes chr3R 24466595 intergenic not near genes chr3R_12_24465001 chr3R_24465001 RAL-502 2439 chr3R 24472552 24472603 chr3R 24472680 24472731 13 125 0.0 2.5 1.2 5.9 179 chr3R 24472552 intergenic not near genes chr3R 24472642 intergenic not near genes chr3R 24472731 intergenic not near genes chr3R_13_24470001 chr3R_24470001 RAL-502 2440 chr3R 24493268 24493304 chr3R 24493517 24493553 BS 12 248 3.0 8.5 5.8 1.8 285 chr3R 24493268 intergenic not near genes chr3R 24493410 intergenic not near genes chr3R 24493553 intergenic not near genes chr3R_12_24490001 chr3R_24490001 RAL-502 2441 chr3R 24527789 24527829 chr3R 24527894 24527940 7 110 0.5 4.0 2.2 2.2 151 chr3R 24527789 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527940 intergenic CG6607 +,CG13618 + chr3R_7_24525001 chr3R_24525001 RAL-502 2442 chr3R 24667587 24667618 chr3R 24667684 24667715 7 96 5.0 0.0 2.5 2.0 128 chr3R 24667587 intron slo + chr3R 24667651 intron slo + chr3R 24667715 intron slo + chr3R_7_24665001 chr3R_24665001 RAL-502 2443 chr3R 24670034 24670190 chr3R 24670164 24670292 17 124 0.0 0.0 0.0 17.0 258 chr3R 24670034 intron slo + chr3R 24670163 intron slo + chr3R 24670292 intron slo + chr3R_17_24670001 chr3R_24670001 RAL-502 2444 chr3R 24912464 24912512 chr3R 24912564 24912614 9 102 5.5 3.0 4.2 1.7 150 chr3R 24912464 intergenic not near genes chr3R 24912539 intergenic CR44267 + chr3R 24912614 intergenic CR44267 + chr3R_9_24910001 chr3R_24910001 RAL-502 2445 chr3R 24974895 24974926 chr3R 24974994 24975025 12 99 4.5 10.0 7.2 1.5 130 chr3R 24974895 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975025 intergenic not near genes chr3R_12_24970001 chr3R_24970001 RAL-502 2446 chr3R 25004897 25004904 chr3R 25005000 25005007 4 103 5.0 5.5 5.2 0.6 110 chr3R 25004897 intron tnc + chr3R 25004952 intron tnc + chr3R 25005007 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-502 2447 chr3R 25004905 25004921 chr3R 25004991 25005024 7 100 2.5 5.0 3.8 1.5 119 chr3R 25004905 intron tnc + chr3R 25004964 intron tnc + chr3R 25005024 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-502 2448 chr3R 25136388 25136425 chr3R 25136484 25136521 4 98 4.5 0.0 2.2 1.2 133 chr3R 25136388 3` UTR Bili + chr3R 25136454 3` UTR Bili + chr3R 25136521 3` UTR Bili + chr3R_4_25135001 chr3R_25135001 RAL-502 2449 chr3R 25280820 25280861 chr3R 25281160 25281201 14 339 6.0 3.0 4.5 2.5 381 chr3R 25280820 intergenic not near genes chr3R 25281010 intergenic not near genes chr3R 25281201 intergenic CG11892 + chr3R_14_25280001 chr3R_25280001 RAL-502 2450 chr3R 25296151 25296195 chr3R 25296252 25296296 21 99 2.5 6.5 4.5 3.8 145 chr3R 25296151 3` UTR CG31097 - chr3R 25296224 3` UTR CG31097 - chr3R 25296296 3` UTR CG31097 - chr3R_21_25295001 chr3R_25295001 RAL-502 2451 chr3R 25368453 25368490 chr3R 25368591 25368601 9 135 3.0 0.0 1.5 3.6 148 chr3R 25368453 intron Fur1 - chr3R 25368527 intron Fur1 - chr3R 25368601 intron Fur1 - chr3R_9_25365001 chr3R_25365001 RAL-502 2452 chr3R 25411768 25411795 chr3R 25411884 25411918 5 120 1.0 3.0 2.0 1.7 150 chr3R 25411768 intron Fur1 - chr3R 25411843 intron Fur1 - chr3R 25411918 intron Fur1 - chr3R_5_25410001 chr3R_25410001 RAL-502 2453 chr3R 25509118 25509144 chr3R 25509223 25509228 5 102 3.0 2.0 2.5 1.4 110 chr3R 25509118 intergenic not near genes chr3R 25509173 intergenic not near genes chr3R 25509228 intergenic not near genes chr3R_5_25505001 chr3R_25505001 RAL-502 2454 chr3R 25528024 25528046 chr3R 25528147 25528169 8 120 7.0 8.0 7.5 0.9 145 chr3R 25528024 intron msi + chr3R 25528096 intron msi + chr3R 25528169 intron msi + chr3R_8_25525001 chr3R_25525001 RAL-502 2455 chr3R 25671228 25671267 chr3R 25671339 25671387 5 118 4.5 1.5 3.0 1.2 159 chr3R 25671228 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671387 intron Lgr3 + chr3R_5_25670001 chr3R_25670001 RAL-502 2456 chr3R 25725818 25725854 chr3R 25734998 25735034 roo 7 9180 2.0 3.5 2.8 1.8 9216 chr3R 25725818 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735034 intron LpR2 - chr3R_7_25730001 chr3R_25730001 RAL-502 2457 chr3R 25738616 25738664 chr3R 25738720 25738772 17 104 3.0 2.0 2.5 4.9 156 chr3R 25738616 intron LpR2 - chr3R 25738694 intron LpR2 - chr3R 25738772 intron LpR2 - chr3R_17_25735001 chr3R_25735001 RAL-502 2458 chr3R 25740271 25740318 chr3R 25740706 25740752 6 432 4.0 4.0 4.0 1.2 481 chr3R 25740271 5` UTR LpR2 - chr3R 25740512 intergenic LpR2 - chr3R 25740752 intergenic LpR2 - chr3R_6_25740001 chr3R_25740001 RAL-502 2459 chr3R 25765855 25765911 chr3R 25765954 25765985 12 88 3.5 0.5 2.0 4.0 130 chr3R 25765855 intergenic not near genes chr3R 25765920 intergenic not near genes chr3R 25765985 intergenic not near genes chr3R_12_25765001 chr3R_25765001 RAL-502 2460 chr3R 25832678 25832723 chr3R 25841880 25841895 roo 10 9194 2.0 6.5 4.2 1.9 9217 chr3R 25832678 exon alpha4GT2 + chr3R 25837286 intron alpha4GT2 + chr3R 25841895 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-502 2461 chr3R 25848658 25848670 chr3R 25848766 25848778 4 108 1.0 6.0 3.5 0.9 120 chr3R 25848658 intergenic CR45657 + chr3R 25848718 intergenic CR45657 + chr3R 25848778 intergenic CR45657 + chr3R_4_25845001 chr3R_25845001 RAL-502 2462 chr3R 25861804 25861850 chr3R 25861900 25861947 14 95 3.0 1.0 2.0 4.7 143 chr3R 25861804 intron CG5890 + chr3R 25861876 intron CG5890 + chr3R 25861947 intron CG5890 + chr3R_14_25860001 chr3R_25860001 RAL-502 2463 chr3R 25869198 25869241 chr3R 25869403 25869455 15 204 6.0 3.0 4.5 2.7 257 chr3R 25869198 intron CG5890 + chr3R 25869326 intron CG5890 + chr3R 25869455 intron CG5890 + chr3R_15_25865001 chr3R_25865001 RAL-502 2464 chr3R 25884444 25884483 chr3R 25887402 25887441 10 2958 12.0 23.0 17.5 0.5 2997 chr3R 25884444 intron SppL + chr3R 25885942 exon SppL + chr3R 25887441 3` UTR SppL + chr3R_10_25885001 chr3R_25885001 RAL-502 2465 chr3R 25884430 25884469 chr3R 25887936 25887980 11 3507 12.5 42.0 27.2 0.4 3550 chr3R 25884430 intron SppL + chr3R 25886205 intron SppL + chr3R 25887980 3` UTR SppL + chr3R_11_25885001 chr3R_25885001 RAL-502 2466 chr3R 25900883 25900931 chr3R 25903580 25903628 14 2698 39.0 33.5 36.2 0.4 2745 chr3R 25900883 exon CG31091 + chr3R 25902256 intergenic CG31091 +,CG31089 + chr3R 25903628 exon,intron CG31089 +,CR43259 - chr3R_14_25900001 chr3R_25900001 RAL-502 2467 chr3R 25910890 25910928 chr3R 25910989 25911027 8 97 1.5 4.5 3.0 2.0 137 chr3R 25910890 intron CG42235 + chr3R 25910958 intron CG42235 + chr3R 25911027 intron CG42235 + chr3R_8_25910001 chr3R_25910001 RAL-502 2468 chr3R 26122453 26122480 chr3R 26122545 26122570 9 94 0.0 6.5 3.2 2.1 117 chr3R 26122453 intron CG31324 + chr3R 26122512 intron CG31324 + chr3R 26122570 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-502 2469 chr3R 26126530 26126566 chr3R 26126636 26126671 14 104 4.0 6.0 5.0 2.3 141 chr3R 26126530 intron CG31324 + chr3R 26126600 intron CG31324 + chr3R 26126671 intron,5` UTR CG31324 +,CG14556 + chr3R_14_26125001 chr3R_26125001 RAL-502 2470 chr3R 26227447 26227483 chr3R 26227664 26227701 18 217 4.0 1.5 2.8 4.7 254 chr3R 26227447 intergenic not near genes chr3R 26227574 intergenic not near genes chr3R 26227701 intergenic not near genes chr3R_18_26225001 chr3R_26225001 RAL-502 2471 chr3R 26235497 26235521 chr3R 26235570 26235614 8 82 3.5 9.0 6.2 1.1 117 chr3R 26235497 5` UTR CR42745 + chr3R 26235556 5` UTR CR42745 + chr3R 26235614 intron CR42745 + chr3R_8_26235001 chr3R_26235001 RAL-502 2472 chr3R 26292089 26292124 chr3R 26292187 26292224 8 100 4.0 2.5 3.2 1.9 135 chr3R 26292089 intergenic not near genes chr3R 26292156 intergenic not near genes chr3R 26292224 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-502 2473 chr3R 26334552 26334603 chr3R 26334697 26334748 18 139 5.5 6.0 5.8 2.6 196 chr3R 26334552 intron CG33970 + chr3R 26334650 intron CG33970 + chr3R 26334748 intron CG33970 + chr3R_18_26330001 chr3R_26330001 RAL-502 2474 chr3R 26376304 26376348 chr3R 26385484 26385528 roo 17 9177 2.0 1.5 1.8 6.1 9224 chr3R 26376304 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385528 intergenic not near genes chr3R_17_26380001 chr3R_26380001 RAL-502 2475 chr3R 26510257 26510261 chr3R 26510366 26510372 5 114 7.0 2.5 4.8 0.9 115 chr3R 26510257 intron plum - chr3R 26510314 intron plum - chr3R 26510372 intron plum - chr3R_5_26510001 chr3R_26510001 RAL-502 2476 chr3R 26510262 26510283 chr3R 26510362 26510392 12 117 2.0 2.0 2.0 4.0 130 chr3R 26510262 intron plum - chr3R 26510327 intron plum - chr3R 26510392 intron plum - chr3R_12_26510001 chr3R_26510001 RAL-502 2477 chr3R 26510508 26510529 chr3R 26519583 26519604 roo 7 9074 3.0 5.0 4.0 1.4 9096 chr3R 26510508 intron plum - chr3R 26515056 intron plum - chr3R 26519604 intron,5` UTR plum -,CR45226 + chr3R_7_26515001 chr3R_26515001 RAL-502 2478 chr3R 26529326 26529364 chr3R 26529429 26529460 8 101 6.5 0.0 3.2 1.9 134 chr3R 26529326 intron plum - chr3R 26529393 intron plum - chr3R 26529460 intron plum - chr3R_8_26525001 chr3R_26525001 RAL-502 2479 chr3R 26545993 26546003 chr3R 26546195 26546205 6 201 3.0 4.5 3.8 1.2 212 chr3R 26545993 intron scrib + chr3R 26546099 intron scrib + chr3R 26546205 intron scrib + chr3R_6_26545001 chr3R_26545001 RAL-502 2480 chr3R 26546006 26546022 chr3R 26546193 26546223 7 193 0.5 3.5 2.0 2.3 217 chr3R 26546006 intron scrib + chr3R 26546114 intron scrib + chr3R 26546223 intron scrib + chr3R_7_26545001 chr3R_26545001 RAL-502 2481 chr3R 26558312 26558360 chr3R 26565639 26565674 Stalker4 7 7322 3.5 4.0 3.8 1.5 7362 chr3R 26558312 intron scrib + chr3R 26561993 intron scrib + chr3R 26565674 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-502 2482 chr3R 26574987 26575039 chr3R 26575086 26575136 19 95 1.0 1.5 1.2 8.6 149 chr3R 26574987 exon scrib + chr3R 26575062 intron scrib + chr3R 26575136 intron scrib + chr3R_19_26575001 chr3R_26575001 RAL-502 2483 chr3R 26642713 26642762 chr3R 26643126 26643174 jockey 10 411 4.5 7.5 6.0 1.4 461 chr3R 26642713 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643174 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-502 2484 chr3R 26652252 26652299 chr3R 26652358 26652397 16 102 5.5 4.5 5.0 2.7 145 chr3R 26652252 intron beat-VII - chr3R 26652324 intron beat-VII - chr3R 26652397 intron beat-VII - chr3R_16_26650001 chr3R_26650001 RAL-502 2485 chr3R 26660413 26660460 chr3R 26660515 26660563 14 98 4.0 3.5 3.8 2.9 150 chr3R 26660413 intron beat-VII - chr3R 26660488 intron beat-VII - chr3R 26660563 intron beat-VII - chr3R_14_26660001 chr3R_26660001 RAL-502 2486 chr3R 26688850 26688864 chr3R 26688948 26688962 9 97 4.5 3.0 3.8 1.9 112 chr3R 26688850 intergenic not near genes chr3R 26688906 intergenic not near genes chr3R 26688962 intergenic not near genes chr3R_9_26685001 chr3R_26685001 RAL-502 2487 chr3R 26710818 26710856 chr3R 26710922 26710960 13 101 4.0 9.0 6.5 1.7 142 chr3R 26710818 intron amon - chr3R 26710889 intron amon - chr3R 26710960 intron amon - chr3R_13_26710001 chr3R_26710001 RAL-502 2488 chr3R 26770224 26770271 chr3R 26770320 26770368 14 97 3.5 6.5 5.0 2.3 144 chr3R 26770224 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770368 intergenic not near genes chr3R_14_26770001 chr3R_26770001 RAL-502 2489 chr3R 26810532 26810581 chr3R 26811037 26811086 roo 13 504 4.5 5.5 5.0 2.2 554 chr3R 26810532 intron Tl + chr3R 26810809 intron Tl + chr3R 26811086 intron Tl + chr3R_13_26810001 chr3R_26810001 RAL-502 2490 chr3R 26845555 26845593 chr3R 26845652 26845693 8 98 4.0 3.0 3.5 1.8 138 chr3R 26845555 intron Lerp - chr3R 26845624 intron Lerp - chr3R 26845693 intron Lerp - chr3R_8_26845001 chr3R_26845001 RAL-502 2491 chr3R 26898240 26898272 chr3R 26898329 26898377 10 97 3.0 4.0 3.5 2.2 137 chr3R 26898240 intron T48 + chr3R 26898308 intron T48 + chr3R 26898377 intron T48 + chr3R_10_26895001 chr3R_26895001 RAL-502 2492 chr3R 27007391 27007433 chr3R 27016542 27016562 roo 11 9149 5.5 4.0 4.8 1.9 9171 chr3R 27007391 intron RYa-R + chr3R 27011976 intron RYa-R + chr3R 27016562 intron RYa-R + chr3R_11_27010001 chr3R_27010001 RAL-502 2493 chr3R 27027663 27027702 chr3R 27027767 27027802 7 102 2.5 1.5 2.0 2.3 139 chr3R 27027663 intron RYa-R + chr3R 27027732 intron RYa-R + chr3R 27027802 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-502 2494 chr3R 27028708 27028755 chr3R 27028807 27028854 14 94 2.5 5.0 3.8 2.9 146 chr3R 27028708 intron RYa-R + chr3R 27028781 intron RYa-R + chr3R 27028854 intron RYa-R + chr3R_14_27025001 chr3R_27025001 RAL-502 2495 chr3R 27030204 27030247 chr3R 27030353 27030381 12 146 5.0 0.0 2.5 3.4 177 chr3R 27030204 intron RYa-R + chr3R 27030292 intron RYa-R + chr3R 27030381 intron RYa-R + chr3R_12_27030001 chr3R_27030001 RAL-502 2496 chr3R 27038545 27038591 chr3R 27038684 27038730 5 139 4.0 4.0 4.0 1.0 185 chr3R 27038545 intron RYa-R + chr3R 27038638 intron RYa-R + chr3R 27038730 intron RYa-R + chr3R_5_27035001 chr3R_27035001 RAL-502 2497 chr3R 27077089 27077129 chr3R 27077177 27077228 13 94 6.5 4.5 5.5 2.0 139 chr3R 27077089 intron CG14257 + chr3R 27077158 intron CG14257 + chr3R 27077228 intron CG14257 + chr3R_13_27075001 chr3R_27075001 RAL-502 2498 chr3R 27140495 27140544 chr3R 27148123 27148161 412 17 7626 5.0 6.5 5.8 2.5 7666 chr3R 27140495 intron CG6051 - chr3R 27144328 intron CG6051 - chr3R 27148161 intron CG6051 - chr3R_17_27140001 chr3R_27140001 RAL-502 2499 chr3R 27220027 27220075 chr3R 27220131 27220179 5 104 1.0 5.0 3.0 1.2 152 chr3R 27220027 intergenic not near genes chr3R 27220103 intergenic not near genes chr3R 27220179 intergenic not near genes chr3R_5_27220001 chr3R_27220001 RAL-502 2500 chr3R 27245574 27245600 chr3R 27245685 27245698 6 106 5.5 2.0 3.8 1.2 124 chr3R 27245574 intergenic CG18766 - chr3R 27245636 intergenic CG18766 - chr3R 27245698 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-502 2501 chr3R 27245602 27245608 chr3R 27245682 27245719 6 97 4.0 2.0 3.0 1.5 117 chr3R 27245602 intergenic CG18766 - chr3R 27245660 intergenic CG18766 - chr3R 27245719 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-502 2502 chr3R 27300853 27300877 chr3R 27300952 27300963 7 102 5.5 1.0 3.2 1.7 110 chr3R 27300853 intron CG3339 - chr3R 27300908 intron CG3339 - chr3R 27300963 intron CG3339 - chr3R_7_27300001 chr3R_27300001 RAL-502 2503 chr3R 27329478 27329501 chr3R 27329552 27329597 8 91 2.5 3.5 3.0 2.0 119 chr3R 27329478 intergenic CG3330 - chr3R 27329538 intergenic CG3330 - chr3R 27329597 intergenic CG3330 - chr3R_8_27325001 chr3R_27325001 RAL-502 2504 chr3R 27342780 27342817 chr3R 27351376 27351399 Tirant 16 8597 6.0 4.0 5.0 2.7 8619 chr3R 27342780 intron CG42534 + chr3R 27347090 intron CG42534 + chr3R 27351399 intron CG42534 + chr3R_16_27345001 chr3R_27345001 RAL-502 2505 chr3R 27377462 27377500 chr3R 27377565 27377603 8 103 5.5 2.5 4.0 1.6 141 chr3R 27377462 3` UTR side - chr3R 27377532 3` UTR side - chr3R 27377603 3` UTR side - chr3R_8_27375001 chr3R_27375001 RAL-502 2506 chr3R 27418707 27418713 chr3R 27418797 27418804 4 97 5.0 8.5 6.8 0.5 97 chr3R 27418707 5` UTR side - chr3R 27418756 5` UTR side - chr3R 27418804 5` UTR side - chr3R_4_27415001 chr3R_27415001 RAL-502 2507 chr3R 27427391 27427400 chr3R 27427447 27427496 7 67 3.5 1.0 2.2 2.2 105 chr3R 27427391 intron side - chr3R 27427444 intron side - chr3R 27427496 intron side - chr3R_7_27425001 chr3R_27425001 RAL-502 2508 chr3R 27492366 27492407 chr3R 27492473 27492481 8 102 3.5 3.0 3.2 1.9 115 chr3R 27492366 intergenic not near genes chr3R 27492424 intergenic not near genes chr3R 27492481 intergenic not near genes chr3R_8_27490001 chr3R_27490001 RAL-502 2509 chr3R 27496591 27496603 chr3R 27496698 27496720 4 118 7.0 3.5 5.2 0.6 129 chr3R 27496591 intergenic not near genes chr3R 27496656 intergenic not near genes chr3R 27496720 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-502 2510 chr3R 27521156 27521173 chr3R 27530385 27530402 roo 5 9229 4.0 2.5 3.2 1.2 9246 chr3R 27521156 intron CG12885 + chr3R 27525779 intron CG12885 + chr3R 27530402 intron CG12885 + chr3R_5_27525001 chr3R_27525001 RAL-502 2511 chr3R 27570280 27570299 chr3R 27570354 27570391 4 88 2.5 4.0 3.2 1.0 111 chr3R 27570280 intron wdb - chr3R 27570336 intron wdb - chr3R 27570391 intron wdb - chr3R_4_27570001 chr3R_27570001 RAL-502 2512 chr3R 27574084 27574129 chr3R 27574503 27574525 13 407 7.0 4.0 5.5 2.0 441 chr3R 27574084 intron wdb - chr3R 27574304 intron wdb - chr3R 27574525 intron wdb - chr3R_13_27570001 chr3R_27570001 RAL-502 2513 chr3R 27594719 27594766 chr3R 27594824 27594861 10 103 6.5 5.5 6.0 1.4 142 chr3R 27594719 intron CG5639 - chr3R 27594790 intron CG5639 - chr3R 27594861 intron CG5639 - chr3R_10_27590001 chr3R_27590001 RAL-502 2514 chr3R 27706762 27706810 chr3R 27706859 27706886 20 92 3.5 3.0 3.2 4.8 124 chr3R 27706762 intergenic CG12428 -,CG12877 + chr3R 27706824 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_20_27705001 chr3R_27705001 RAL-502 2515 chr3R 27799916 27799945 chr3R 27800018 27800047 11 102 8.0 5.0 6.5 1.5 131 chr3R 27799916 intron CG34353 - chr3R 27799982 intron CG34353 - chr3R 27800047 intron CG34353 - chr3R_11_27795001 chr3R_27795001 RAL-502 2516 chr3R 27812417 27812457 chr3R 27812504 27812554 13 92 6.0 4.5 5.2 2.1 137 chr3R 27812417 intron CG34353 - chr3R 27812486 intron CG34353 - chr3R 27812554 intron CG34353 - chr3R_13_27810001 chr3R_27810001 RAL-502 2517 chr3R 27856739 27856790 chr3R 27858242 27858293 hopper2 16 1501 3.5 3.0 3.2 3.8 1554 chr3R 27856739 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858293 intron CG34353 - chr3R_16_27855001 chr3R_27855001 RAL-502 2518 chr3R 27875688 27875729 chr3R 27882758 27882803 297 18 7070 6.0 10.0 8.0 2.0 7115 chr3R 27875688 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882803 intron CG34353 - chr3R_18_27875001 chr3R_27875001 RAL-502 2519 chr3R 27891431 27891479 chr3R 27891539 27891587 4 96 2.5 3.5 3.0 1.0 156 chr3R 27891431 intron CG34353 - chr3R 27891509 intron CG34353 - chr3R 27891587 intron CG34353 - chr3R_4_27890001 chr3R_27890001 RAL-502 2520 chr3R 27901830 27901849 chr3R 27902122 27902141 4 288 5.5 1.0 3.2 1.0 311 chr3R 27901830 intron CG34353 - chr3R 27901986 intron CG34353 - chr3R 27902141 intron CG34353 - chr3R_4_27900001 chr3R_27900001 RAL-502 2521 chr3R 28054422 28054475 chr3R 28054518 28054570 15 89 4.0 6.5 5.2 2.4 148 chr3R 28054422 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054570 intron CG34362 + chr3R_15_28050001 chr3R_28050001 RAL-502 2522 chr3R 28068479 28068524 chr3R 28073937 28073986 I-element 11 5459 1.0 3.0 2.0 3.7 5507 chr3R 28068479 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073986 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-502 2523 chr3R 28173652 28173698 chr3R 28181102 28181147 mdg1 6 7449 5.0 3.0 4.0 1.2 7495 chr3R 28173652 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181147 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-502 2524 chr3R 28253333 28253366 chr3R 28255848 28255896 jockey 8 2520 8.5 5.0 6.8 1.0 2563 chr3R 28253333 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255896 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-502 2525 chr3R 28282974 28283009 chr3R 28283622 28283657 14 647 7.0 6.0 6.5 1.9 683 chr3R 28282974 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283657 intergenic CG34437 +,CG34436 + chr3R_14_28280001 chr3R_28280001 RAL-502 2526 chr3R 28302091 28302130 chr3R 28302550 28302588 jockey 13 457 6.0 6.5 6.2 1.8 497 chr3R 28302091 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302588 intergenic not near genes chr3R_13_28300001 chr3R_28300001 RAL-502 2527 chr3R 28331491 28331520 chr3R 28331590 28331619 9 99 1.5 1.5 1.5 3.6 128 chr3R 28331491 intron larp - chr3R 28331555 intron larp - chr3R 28331619 intron larp - chr3R_9_28330001 chr3R_28330001 RAL-502 2528 chr3R 28345636 28345652 chr3R 28345729 28345733 6 92 6.5 3.5 5.0 1.0 97 chr3R 28345636 intergenic Moca-cyp + chr3R 28345684 intergenic not near genes chr3R 28345733 intergenic not near genes chr3R_6_28345001 chr3R_28345001 RAL-502 2529 chr3R 28390117 28390143 chr3R 28390190 28390241 7 78 1.5 6.0 3.8 1.5 124 chr3R 28390117 intergenic not near genes chr3R 28390179 intergenic not near genes chr3R 28390241 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-502 2530 chr3R 28393681 28393729 chr3R 28393800 28393849 13 119 2.5 3.5 3.0 3.2 168 chr3R 28393681 intergenic not near genes chr3R 28393765 intergenic not near genes chr3R 28393849 intergenic not near genes chr3R_13_28390001 chr3R_28390001 RAL-502 2531 chr3R 28616457 28616491 chr3R 28616571 28616605 8 113 3.5 3.0 3.2 1.9 148 chr3R 28616457 intron CG10011 - chr3R 28616531 intron CG10011 - chr3R 28616605 intron CG10011 - chr3R_8_28615001 chr3R_28615001 RAL-502 2532 chr3R 28633174 28633221 chr3R 28633274 28633321 23 97 5.0 6.5 5.8 3.4 147 chr3R 28633174 intron CG10011 - chr3R 28633248 intron CG10011 - chr3R 28633321 intron CG10011 - chr3R_23_28630001 chr3R_28630001 RAL-502 2533 chr3R 28639032 28639058 chr3R 28639148 28639173 10 114 4.5 4.5 4.5 1.8 141 chr3R 28639032 intergenic CG9988 + chr3R 28639102 intergenic CG9988 + chr3R 28639173 intergenic CG9988 + chr3R_10_28635001 chr3R_28635001 RAL-502 2534 chr3R 28643415 28643435 chr3R 28643581 28643614 4 169 4.5 10.5 7.5 0.5 199 chr3R 28643415 intergenic not near genes chr3R 28643514 intergenic not near genes chr3R 28643614 intergenic not near genes chr3R_4_28640001 chr3R_28640001 RAL-502 2535 chr3R 28744519 28744547 chr3R 28744666 28744699 11 156 4.0 1.5 2.8 2.9 180 chr3R 28744519 5` UTR AstA-R2 - chr3R 28744609 5` UTR AstA-R2 - chr3R 28744699 5` UTR AstA-R2 - chr3R_11_28740001 chr3R_28740001 RAL-502 2536 chr3R 28754101 28754127 chr3R 28754269 28754283 10 166 7.5 3.5 5.5 1.5 182 chr3R 28754101 intergenic not near genes chr3R 28754192 intergenic not near genes chr3R 28754283 intergenic not near genes chr3R_10_28750001 chr3R_28750001 RAL-502 2537 chr3R 28763914 28763919 chr3R 28771377 28771382 Stalker4 4 7463 0.0 6.5 3.2 1.0 7468 chr3R 28763914 intergenic not near genes chr3R 28767648 intergenic not near genes chr3R 28771382 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-502 2538 chr3R 28792878 28792902 chr3R 28797962 28798016 jockey 9 5107 2.5 6.5 4.5 1.6 5138 chr3R 28792878 intergenic not near genes chr3R 28795447 intergenic not near genes chr3R 28798016 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-502 2539 chr3R 21907534 21907536 chr3R 28831799 28831802 100 6924267 26.0 21.5 23.8 4.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_100_25365001 chr3R_25365001 RAL-502 2540 chr3R 28850893 28850913 chr3R 28851149 28851191 10 271 3.0 2.0 2.5 2.9 298 chr3R 28850893 intron spg + chr3R 28851042 intron spg + chr3R 28851191 intron spg + chr3R_10_28850001 chr3R_28850001 RAL-502 2541 chr3R 28968394 28968448 chr3R 28968491 28968541 19 96 6.0 2.0 4.0 3.8 147 chr3R 28968394 intron CG14521 - chr3R 28968468 intron CG14521 - chr3R 28968541 intron CG14521 - chr3R_19_28965001 chr3R_28965001 RAL-502 2542 chr3R 29009937 29009986 chr3R 29010063 29010112 18 119 4.0 6.0 5.0 3.0 175 chr3R 29009937 intron wat - chr3R 29010024 intron wat - chr3R 29010112 intron wat - chr3R_18_29010001 chr3R_29010001 RAL-502 2543 chr3R 21907534 21907536 chr3R 29013340 29013340 4 7105806 26.0 27.5 26.8 0.1 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-502 2544 chr3R 29032759 29032777 chr3R 29032828 29032859 4 82 5.0 0.5 2.8 1.1 100 chr3R 29032759 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032809 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032859 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-502 2545 chr3R 29034045 29034097 chr3R 29034461 29034512 8 414 0.0 1.5 0.8 4.4 467 chr3R 29034045 5` UTR CR45044 + chr3R 29034278 intergenic CR45044 +,beta4GalNAcTB -,Cpsf100 + chr3R 29034512 intergenic Cpsf100 +,CR45044 + chr3R_8_29030001 chr3R_29030001 RAL-502 2546 chr3R 29054249 29054293 chr3R 29054364 29054408 8 113 2.5 3.5 3.0 2.0 159 chr3R 29054249 intergenic CG11843 +,CG11842 + chr3R 29054328 intergenic CG11843 +,CG11842 + chr3R 29054408 5` UTR CG11843 + chr3R_8_29050001 chr3R_29050001 RAL-502 2547 chr3R 29070034 29070076 chr3R 29070135 29070176 13 101 3.5 4.0 3.8 2.7 142 chr3R 29070034 intron CG11873 + chr3R 29070105 intron CG11873 + chr3R 29070176 intron CG11873 + chr3R_13_29070001 chr3R_29070001 RAL-502 2548 chr3R 29076121 29076146 chr3R 29076309 29076324 10 185 0.0 7.0 3.5 2.2 203 chr3R 29076121 intron CG11873 + chr3R 29076222 intron CG11873 + chr3R 29076324 intron CG11873 + chr3R_10_29075001 chr3R_29075001 RAL-502 2549 chr3R 29079378 29079412 chr3R 29080770 29080804 NOF 20 1390 2.5 5.0 3.8 4.2 1426 chr3R 29079378 intron CG11873 + chr3R 29080091 intron CG11873 + chr3R 29080804 intron CG11873 + chr3R_20_29080001 chr3R_29080001 RAL-502 2550 chr3R 29111612 29111636 chr3R 29111683 29111699 7 66 4.0 5.5 4.8 1.2 87 chr3R 29111612 exon alpha-Man-Ib - chr3R 29111656 exon alpha-Man-Ib - chr3R 29111699 exon alpha-Man-Ib - chr3R_7_29110001 chr3R_29110001 RAL-502 2551 chr3R 29180042 29180086 chr3R 29180151 29180170 17 92 3.0 1.0 2.0 5.7 128 chr3R 29180042 intron CG14509 - chr3R 29180106 intron CG14509 - chr3R 29180170 intron CG14509 - chr3R_17_29180001 chr3R_29180001 RAL-502 2552 chr3R 29237231 29237265 chr3R 29239268 29239301 13 2031 38.0 7.5 22.8 0.5 2070 chr3R 29237231 exon CG11951 - chr3R 29238266 intron CG11951 - chr3R 29239301 exon CG31427 - chr3R_13_29235001 chr3R_29235001 RAL-502 2553 chr3R 29237270 29237540 chr3R 29239267 29239453 5 1953 25.5 7.5 16.5 0.3 2183 chr3R 29237270 exon CG11951 - chr3R 29238362 intron CG11951 - chr3R 29239453 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-502 2554 chr3R 29237525 29237532 chr3R 29239413 29239424 6 1889 27.5 11.5 19.5 0.3 1899 chr3R 29237525 exon CG11951 - chr3R 29238474 intron CG11951 - chr3R 29239424 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-502 2555 chr3R 29249621 29249650 chr3R 29249728 29249756 10 105 1.0 3.5 2.2 3.1 135 chr3R 29249621 intron SP1029 - chr3R 29249688 intron SP1029 - chr3R 29249756 intron SP1029 - chr3R_10_29245001 chr3R_29245001 RAL-502 2556 chr3R 29250964 29251011 chr3R 29251062 29251107 12 93 2.5 3.5 3.0 3.0 143 chr3R 29250964 intergenic not near genes chr3R 29251036 intergenic not near genes chr3R 29251107 intergenic not near genes chr3R_12_29250001 chr3R_29250001 RAL-502 2557 chr3R 29256252 29256264 chr3R 29256352 29256364 5 100 11.0 6.0 8.5 0.5 112 chr3R 29256252 intergenic CG45544 +,stg - chr3R 29256308 intergenic CG45544 + chr3R 29256364 intergenic CG45544 + chr3R_5_29255001 chr3R_29255001 RAL-502 2558 chr3R 29256266 29256298 chr3R 29256346 29256378 8 90 4.5 5.5 5.0 1.3 112 chr3R 29256266 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256378 intergenic CG45544 + chr3R_8_29255001 chr3R_29255001 RAL-502 2559 chr3R 29319820 29319849 chr3R 29320153 29320188 jockey 9 334 1.0 4.5 2.8 2.4 368 chr3R 29319820 intergenic Cnx99A - chr3R 29320004 intergenic Cnx99A - chr3R 29320188 intergenic not near genes chr3R_9_29320001 chr3R_29320001 RAL-502 2560 chr3R 29332263 29332309 chr3R 29332360 29332406 16 95 4.5 2.0 3.2 3.8 143 chr3R 29332263 intergenic not near genes chr3R 29332334 intergenic not near genes chr3R 29332406 intergenic not near genes chr3R_16_29330001 chr3R_29330001 RAL-502 2561 chr3R 29356030 29356080 chr3R 29356130 29356163 12 98 4.0 4.0 4.0 2.4 133 chr3R 29356030 intergenic CR45547 - chr3R 29356096 intergenic CR45547 - chr3R 29356163 3` UTR CR45547 - chr3R_12_29355001 chr3R_29355001 RAL-502 2562 chr3R 29402966 29402994 chr3R 29403079 29403108 7 114 5.5 3.0 4.2 1.3 142 chr3R 29402966 intron Ptp99A + chr3R 29403037 intron Ptp99A + chr3R 29403108 intron Ptp99A + chr3R_7_29400001 chr3R_29400001 RAL-502 2563 chr3R 29406613 29406643 chr3R 29407895 29407929 jockey 10 1296 4.0 4.0 4.0 2.0 1316 chr3R 29406613 intron Ptp99A + chr3R 29407271 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-502 2564 chr3R 29429772 29429803 chr3R 29429867 29429883 8 88 3.0 1.0 2.0 2.7 111 chr3R 29429772 intron Ptp99A + chr3R 29429828 intron Ptp99A + chr3R 29429883 intron Ptp99A + chr3R_8_29425001 chr3R_29425001 RAL-502 2565 chr3R 29449338 29449387 chr3R 29449436 29449485 18 97 4.0 4.0 4.0 3.6 147 chr3R 29449338 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449485 intron Ptp99A + chr3R_18_29445001 chr3R_29445001 RAL-502 2566 chr3R 29449773 29449820 chr3R 29449872 29449923 23 97 7.5 3.5 5.5 3.5 150 chr3R 29449773 intron Ptp99A + chr3R 29449848 intron Ptp99A + chr3R 29449923 intron Ptp99A + chr3R_23_29445001 chr3R_29445001 RAL-502 2567 chr3R 29505875 29505899 chr3R 29505971 29505983 4 94 7.0 4.0 5.5 0.6 108 chr3R 29505875 intergenic not near genes chr3R 29505929 intergenic not near genes chr3R 29505983 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-502 2568 chr3R 29505900 29505925 chr3R 29505970 29506022 9 91 3.5 4.0 3.8 1.9 122 chr3R 29505900 intergenic not near genes chr3R 29505961 intergenic not near genes chr3R 29506022 intergenic not near genes chr3R_9_29505001 chr3R_29505001 RAL-502 2569 chr3R 29526214 29526262 chr3R 29526321 29526369 10 104 1.5 3.0 2.2 3.1 155 chr3R 29526214 intergenic not near genes chr3R 29526292 intergenic not near genes chr3R 29526369 intergenic not near genes chr3R_10_29525001 chr3R_29525001 RAL-502 2570 chr3R 29539413 29539435 chr3R 29539508 29539531 6 96 5.0 0.0 2.5 1.7 118 chr3R 29539413 intergenic not near genes chr3R 29539472 intergenic not near genes chr3R 29539531 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-502 2571 chr3R 29590371 29590403 chr3R 29590467 29590507 14 106 2.5 1.5 2.0 4.7 136 chr3R 29590371 intron CG31041 - chr3R 29590439 intron CG31041 - chr3R 29590507 exon CG31041 - chr3R_14_29590001 chr3R_29590001 RAL-502 2572 chr3R 29609146 29609200 chr3R 29609255 29609306 6 107 2.5 0.0 1.2 2.7 160 chr3R 29609146 intron alph + chr3R 29609226 intron alph + chr3R 29609306 intron alph + chr3R_6_29605001 chr3R_29605001 RAL-502 2573 chr3R 29738253 29738295 chr3R 29739738 29739766 hobo 22 1484 1.5 6.0 3.8 4.6 1513 chr3R 29738253 intergenic CG1969 +,CG7598 + chr3R 29739010 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_22_29735001 chr3R_29735001 RAL-502 2574 chr3R 29854806 29854854 chr3R 29854906 29854954 19 97 2.0 8.0 5.0 3.2 148 chr3R 29854806 3` UTR dgt1 - chr3R 29854880 exon dgt1 - chr3R 29854954 exon dgt1 - chr3R_19_29850001 chr3R_29850001 RAL-502 2575 chr3R 29882003 29882017 chr3R 29891180 29891191 roo 5 9176 10.5 5.0 7.8 0.6 9188 chr3R 29882003 intron CG31038 + chr3R 29886597 intron CG31038 + chr3R 29891191 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-502 2576 chr3R 29882018 29882044 chr3R 29891178 29891220 roo 8 9174 5.5 5.0 5.2 1.3 9202 chr3R 29882018 intron CG31038 + chr3R 29886619 intron CG31038 + chr3R 29891220 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-502 2577 chr3R 29979986 29980012 chr3R 29980063 29980079 5 75 5.0 3.5 4.2 1.0 93 chr3R 29979986 intergenic not near genes chr3R 29980032 intergenic not near genes chr3R 29980079 intergenic not near genes chr3R_5_29980001 chr3R_29980001 RAL-502 2578 chr3R 30026941 30026987 chr3R 30027042 30027085 5 100 0.0 0.0 0.0 5.0 144 chr3R 30026941 intron Axn + chr3R 30027013 intron Axn + chr3R 30027085 intron Axn + chr3R_5_30025001 chr3R_30025001 RAL-502 2579 chr3R 30032142 30032183 chr3R 30032241 30032257 8 93 2.0 3.5 2.8 2.1 115 chr3R 30032142 intron Axn + chr3R 30032200 intron Axn + chr3R 30032257 intron Axn + chr3R_8_30030001 chr3R_30030001 RAL-502 2580 chr3R 30051288 30051303 chr3R 30051383 30051401 5 97 2.5 8.5 5.5 0.8 113 chr3R 30051288 intron,intron CG15528 -,CR44046 + chr3R 30051344 intron,intron CG15528 -,CR44046 + chr3R 30051401 intron,intron CG15528 -,CR44046 + chr3R_5_30050001 chr3R_30050001 RAL-502 2581 chr3R 30061845 30061851 chr3R 30061943 30061949 5 97 10.5 0.0 5.2 0.8 104 chr3R 30061845 intron sima + chr3R 30061897 intron sima + chr3R 30061949 intron sima + chr3R_5_30060001 chr3R_30060001 RAL-502 2582 chr3R 30084831 30084869 chr3R 30086318 30086356 hobo 7 1483 8.0 4.5 6.2 1.0 1525 chr3R 30084831 intron sima + chr3R 30085594 intron sima + chr3R 30086356 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-502 2583 chr3R 30124942 30124978 chr3R 30125038 30125049 5 85 3.0 5.0 4.0 1.0 107 chr3R 30124942 intergenic CG45073 - chr3R 30124996 intergenic CG45073 - chr3R 30125049 intergenic CG45073 - chr3R_5_30125001 chr3R_30125001 RAL-502 2584 chr3R 30199339 30199348 chr3R 30199425 30199434 5 97 5.5 8.0 6.8 0.6 95 chr3R 30199339 intron CG9743 - chr3R 30199386 intron CG9743 - chr3R 30199434 intron CG9743 - chr3R_5_30195001 chr3R_30195001 RAL-502 2585 chr3R 30199354 30199364 chr3R 30199424 30199447 6 86 4.5 8.0 6.2 0.8 93 chr3R 30199354 intron CG9743 - chr3R 30199400 intron CG9743 - chr3R 30199447 intron CG9743 - chr3R_6_30195001 chr3R_30195001 RAL-502 2586 chr3R 30238745 30238783 chr3R 30239929 30239967 1360 11 1182 3.0 5.5 4.2 2.1 1222 chr3R 30238745 intergenic not near genes chr3R 30239356 intergenic not near genes chr3R 30239967 intergenic not near genes chr3R_11_30235001 chr3R_30235001 RAL-502 2587 chr3R 30267973 30267998 chr3R 30268064 30268077 6 98 5.0 4.5 4.8 1.0 104 chr3R 30267973 intergenic not near genes chr3R 30268025 intergenic not near genes chr3R 30268077 intergenic not near genes chr3R_6_30265001 chr3R_30265001 RAL-502 2588 chr3R 30317313 30317359 chr3R 30324916 30324971 roo 8 7609 1.0 4.5 2.8 2.1 7658 chr3R 30317313 intron hdc + chr3R 30321142 intron hdc + chr3R 30324971 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-502 2589 chr3R 30330482 30330519 chr3R 30330576 30330588 11 91 6.0 6.5 6.2 1.5 106 chr3R 30330482 intron hdc + chr3R 30330535 intron hdc + chr3R 30330588 intron hdc + chr3R_11_30330001 chr3R_30330001 RAL-502 2590 chr3R 30339536 30339579 chr3R 30339864 30339879 13 325 3.5 4.5 4.0 2.6 343 chr3R 30339536 intron hdc + chr3R 30339708 intron hdc + chr3R 30339879 intron hdc + chr3R_13_30335001 chr3R_30335001 RAL-502 2591 chr3R 30375528 30375550 chr3R 30383171 30383193 412 8 7643 6.0 4.0 5.0 1.3 7665 chr3R 30375528 intergenic not near genes chr3R 30379360 intergenic not near genes chr3R 30383193 intergenic not near genes chr3R_8_30375001 chr3R_30375001 RAL-502 2592 chr3R 30396198 30396239 chr3R 30404484 30404522 roo 13 8282 3.5 1.5 2.5 3.7 8324 chr3R 30396198 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404522 5` UTR CR45570 + chr3R_13_30400001 chr3R_30400001 RAL-502 2593 chr3R 30456378 30456424 chr3R 30456473 30456524 11 99 2.0 4.0 3.0 2.8 146 chr3R 30456378 intergenic CG2224 - chr3R 30456451 3` UTR CG2224 - chr3R 30456524 3` UTR CG2224 - chr3R_11_30455001 chr3R_30455001 RAL-502 2594 chr3R 30458003 30458023 chr3R 30458102 30458120 6 98 4.0 5.5 4.8 1.0 117 chr3R 30458003 intron CG2224 - chr3R 30458062 intron CG2224 - chr3R 30458120 intron CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-502 2595 chr3R 30458024 30458048 chr3R 30458095 30458148 14 95 3.5 4.5 4.0 2.8 124 chr3R 30458024 intron CG2224 - chr3R 30458086 intron CG2224 - chr3R 30458148 intron CG2224 - chr3R_14_30455001 chr3R_30455001 RAL-502 2596 chr3R 30480472 30480510 chr3R 30482940 30482998 jockey 10 2477 2.0 3.0 2.5 2.9 2526 chr3R 30480472 intron PH4alphaEFB + chr3R 30481735 intron PH4alphaEFB + chr3R 30482998 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-502 2597 chr3R 30498404 30498422 chr3R 30498623 30498642 8 219 0.0 6.0 3.0 2.0 238 chr3R 30498404 intron PH4alphaNE1 - chr3R 30498523 intron PH4alphaNE1 - chr3R 30498642 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-502 2598 chr3R 30498425 30498433 chr3R 30498619 30498652 4 213 0.0 6.0 3.0 1.0 227 chr3R 30498425 intron PH4alphaNE1 - chr3R 30498538 intron PH4alphaNE1 - chr3R 30498652 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-502 2599 chr3R 30549005 30549017 chr3R 30549117 30549128 9 110 10.0 8.5 9.2 0.9 123 chr3R 30549005 intron tmod + chr3R 30549066 intron tmod + chr3R 30549128 intron tmod + chr3R_9_30545001 chr3R_30545001 RAL-502 2600 chr3R 30549018 30549028 chr3R 30549109 30549140 4 107 7.5 7.0 7.2 0.5 122 chr3R 30549018 intron tmod + chr3R 30549079 intron tmod + chr3R 30549140 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-502 2601 chr3R 30571681 30571722 chr3R 30571781 30571819 6 98 0.5 0.5 0.5 4.0 138 chr3R 30571681 intron tmod + chr3R 30571750 intron tmod + chr3R 30571819 exon tmod + chr3R_6_30570001 chr3R_30570001 RAL-502 2602 chr3R 30600776 30600825 chr3R 30600891 30600907 21 112 6.5 6.0 6.2 2.9 131 chr3R 30600776 intron CG2246 - chr3R 30600842 intron CG2246 - chr3R 30600907 intron CG2246 - chr3R_21_30600001 chr3R_30600001 RAL-502 2603 chr3R 30627592 30627605 chr3R 30627692 30627701 4 99 14.0 10.5 12.2 0.3 109 chr3R 30627592 3` UTR CG2267 - chr3R 30627646 exon CG2267 - chr3R 30627701 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-502 2604 chr3R 30627607 30627616 chr3R 30627689 30627691 4 80 12.5 9.5 11.0 0.3 84 chr3R 30627607 exon CG2267 - chr3R 30627649 exon CG2267 - chr3R 30627691 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-502 2605 chr3R 30627619 30627636 chr3R 30627686 30627691 7 77 5.5 8.5 7.0 0.9 72 chr3R 30627619 exon CG2267 - chr3R 30627655 exon CG2267 - chr3R 30627691 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-502 2606 chr3R 30649850 30649873 chr3R 30649930 30649973 9 97 2.5 4.0 3.2 2.1 123 chr3R 30649850 3` UTR CG34432 + chr3R 30649912 intergenic CG34432 +,CG34433 + chr3R 30649973 exon CG34433 + chr3R_9_30645001 chr3R_30645001 RAL-502 2607 chr3R 30650788 30650803 chr3R 30650905 30650917 5 115 0.5 2.0 1.2 2.3 129 chr3R 30650788 3` UTR CG34433 + chr3R 30650852 3` UTR CG34433 + chr3R 30650917 intergenic CG34433 + chr3R_5_30650001 chr3R_30650001 RAL-502 2608 chr3R 30679525 30679550 chr3R 30687014 30687039 blood 5 7487 5.5 10.0 7.8 0.6 7514 chr3R 30679525 intergenic not near genes chr3R 30683282 intergenic not near genes chr3R 30687039 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-502 2609 chr3R 30690159 30690189 chr3R 30690254 30690267 9 95 4.0 6.0 5.0 1.5 108 chr3R 30690159 intergenic Spn100A + chr3R 30690213 intergenic Spn100A + chr3R 30690267 intergenic Spn100A + chr3R_9_30690001 chr3R_30690001 RAL-502 2610 chr3R 30737931 30737948 chr3R 30738045 30738048 5 111 9.5 8.0 8.8 0.5 117 chr3R 30737931 intergenic not near genes chr3R 30737990 intergenic not near genes chr3R 30738048 intergenic not near genes chr3R_5_30735001 chr3R_30735001 RAL-502 2611 chr3R 30737950 30737969 chr3R 30738041 30738083 11 110 7.0 7.0 7.0 1.4 133 chr3R 30737950 intergenic not near genes chr3R 30738016 intergenic not near genes chr3R 30738083 intergenic not near genes chr3R_11_30735001 chr3R_30735001 RAL-502 2612 chr3R 30818789 30818842 chr3R 30820374 30820427 1360 8 1585 1.5 2.0 1.8 2.9 1638 chr3R 30818789 intron cindr + chr3R 30819608 intron cindr + chr3R 30820427 intron cindr + chr3R_8_30815001 chr3R_30815001 RAL-502 2613 chr3R 30859398 30859424 chr3R 30859496 30859522 7 98 3.5 3.5 3.5 1.6 124 chr3R 30859398 intergenic not near genes chr3R 30859460 intergenic not near genes chr3R 30859522 intergenic not near genes chr3R_7_30855001 chr3R_30855001 RAL-502 2614 chr3R 30952607 30952652 chr3R 30954014 30954058 17 1403 2.0 4.5 3.2 4.0 1451 chr3R 30952607 intergenic not near genes chr3R 30953332 intergenic not near genes chr3R 30954058 intergenic not near genes chr3R_17_30950001 chr3R_30950001 RAL-502 2615 chr3R 30973114 30973160 chr3R 30973295 30973341 11 180 3.0 1.5 2.2 3.4 227 chr3R 30973114 intron 5-HT7 - chr3R 30973228 intron 5-HT7 - chr3R 30973341 intron 5-HT7 - chr3R_11_30970001 chr3R_30970001 RAL-502 2616 chr3R 30993645 30993663 chr3R 30993742 30993764 7 99 2.5 3.0 2.8 1.8 119 chr3R 30993645 intron 5-HT7 - chr3R 30993704 intron 5-HT7 - chr3R 30993764 intron 5-HT7 - chr3R_7_30990001 chr3R_30990001 RAL-502 2617 chr3R 31074216 31074246 chr3R 31081834 31081864 springer 8 7618 5.5 6.0 5.8 1.2 7648 chr3R 31074216 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081864 intron Sox100B + chr3R_8_31075001 chr3R_31075001 RAL-502 2618 chr3R 31103415 31103419 chr3R 31103585 31103605 4 177 5.5 5.0 5.2 0.6 190 chr3R 31103415 intergenic not near genes chr3R 31103510 intergenic not near genes chr3R 31103605 intergenic not near genes chr3R_4_31100001 chr3R_31100001 RAL-502 2619 chr3R 31103420 31103444 chr3R 31103577 31103630 13 178 3.0 3.0 3.0 3.2 210 chr3R 31103420 intergenic not near genes chr3R 31103525 intergenic not near genes chr3R 31103630 intergenic not near genes chr3R_13_31100001 chr3R_31100001 RAL-502 2620 chr3R 31279354 31279400 chr3R 31285565 31285598 diver 14 6207 5.0 4.0 4.5 2.5 6244 chr3R 31279354 intergenic not near genes chr3R 31282476 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_14_31280001 chr3R_31280001 RAL-502 2621 chr3R 31406605 31406645 chr3R 31406885 31406923 6 282 1.5 4.5 3.0 1.5 318 chr3R 31406605 intron Gprk2 + chr3R 31406764 intron Gprk2 + chr3R 31406923 intron Gprk2 + chr3R_6_31405001 chr3R_31405001 RAL-502 2622 chr3R 31413074 31413102 chr3R 31418290 31418303 copia 9 5213 2.5 4.5 3.5 2.0 5229 chr3R 31413074 intron Gprk2 + chr3R 31415688 intron Gprk2 + chr3R 31418303 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-502 2623 chr3R 31426861 31426880 chr3R 31426973 31426992 5 110 12.5 8.5 10.5 0.4 131 chr3R 31426861 intron Gprk2 + chr3R 31426926 intron Gprk2 + chr3R 31426992 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-502 2624 chr3R 31426883 31426910 chr3R 31426968 31427022 16 109 7.5 8.0 7.8 1.8 139 chr3R 31426883 intron Gprk2 + chr3R 31426952 intron Gprk2 + chr3R 31427022 intron Gprk2 + chr3R_16_31425001 chr3R_31425001 RAL-502 2625 chr3R 31431096 31431117 chr3R 31431200 31431220 5 103 7.0 6.0 6.5 0.7 124 chr3R 31431096 intron Gprk2 + chr3R 31431158 intron Gprk2 + chr3R 31431220 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-502 2626 chr3R 31431121 31431130 chr3R 31431196 31431234 7 98 6.5 5.0 5.8 1.0 113 chr3R 31431121 intron Gprk2 + chr3R 31431178 intron Gprk2 + chr3R 31431234 intron Gprk2 + chr3R_7_31430001 chr3R_31430001 RAL-502 2627 chr3R 31442255 31442269 chr3R 31442360 31442374 5 105 10.0 4.0 7.0 0.6 119 chr3R 31442255 intron Gprk2 + chr3R 31442314 intron Gprk2 + chr3R 31442374 intron Gprk2 + chr3R_5_31440001 chr3R_31440001 RAL-502 2628 chr3R 31442270 31442296 chr3R 31442357 31442376 15 97 6.5 3.5 5.0 2.5 106 chr3R 31442270 intron Gprk2 + chr3R 31442323 intron Gprk2 + chr3R 31442376 intron Gprk2 + chr3R_15_31440001 chr3R_31440001 RAL-502 2629 chr3R 31538472 31538512 chr3R 31538566 31538609 6 97 5.0 1.0 3.0 1.5 137 chr3R 31538472 intergenic not near genes chr3R 31538540 intergenic not near genes chr3R 31538609 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-502 2630 chr3R 31691513 31691561 chr3R 31696296 31696328 Doc 15 4775 5.0 7.0 6.0 2.1 4815 chr3R 31691513 intergenic not near genes chr3R 31693920 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_15_31690001 chr3R_31690001 RAL-502 2631 chr3R 31930858 31930867 chr3R 31930978 31930987 8 120 12.0 0.5 6.2 1.1 129 chr3R 31930858 intron heph - chr3R 31930922 intron heph - chr3R 31930987 intron heph - chr3R_8_31930001 chr3R_31930001 RAL-502 2632 chr3R 31931174 31931213 chr3R 31931277 31931311 10 102 5.5 4.0 4.8 1.7 137 chr3R 31931174 intron heph - chr3R 31931242 intron heph - chr3R 31931311 intron heph - chr3R_10_31930001 chr3R_31930001 RAL-502 2633 chr3R 31997979 31998006 chr3R 32005468 32005489 blood 8 7487 3.0 4.0 3.5 1.8 7510 chr3R 31997979 intron heph - chr3R 32001734 intron heph - chr3R 32005489 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-502 2634 chr3R 31998008 31998020 chr3R 32005462 32005488 blood 9 7478 1.0 3.5 2.2 2.8 7480 chr3R 31998008 intron heph - chr3R 32001748 intron heph - chr3R 32005488 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-502 2635 chr4 76473 76497 chr4 81936 81960 I-element 8 5463 10.5 4.0 7.2 1.0 5487 chr4 76473 intron pan + chr4 79216 intron pan + chr4 81960 intron pan + chr4_8_75001 chr4_75001 RAL-502 2636 chr4 97422 97433 chr4 97538 97549 5 116 0.0 12.5 6.2 0.7 127 chr4 97422 intron pan + chr4 97486 intron pan + chr4 97549 intron pan + chr4_5_95001 chr4_95001 RAL-502 2637 chr4 97493 97523 chr4 97606 97647 7 117 13.0 16.5 14.8 0.4 154 chr4 97493 intron pan + chr4 97570 intron pan + chr4 97647 intron pan + chr4_7_95001 chr4_95001 RAL-502 2638 chr4 220613 220626 chr4 220757 220777 4 147 2.0 2.5 2.2 1.2 164 chr4 220613 intron CG31999 - chr4 220695 intron CG31999 - chr4 220777 intron CG31999 - chr4_4_220001 chr4_220001 RAL-502 2639 chr4 257385 257435 chr4 257575 257625 9 188 3.0 3.5 3.2 2.1 240 chr4 257385 exon RhoGAP102A + chr4 257505 intron RhoGAP102A + chr4 257625 intron RhoGAP102A + chr4_9_255001 chr4_255001 RAL-502 2640 chr4 280787 280805 chr4 281437 281455 4 649 6.5 4.5 5.5 0.6 668 chr4 280787 intron Syt7 - chr4 281121 intron Syt7 - chr4 281455 intron Syt7 - chr4_4_280001 chr4_280001 RAL-502 2641 chr4 319976 320013 chr4 328172 328209 Stalker2 12 8196 2.5 1.5 2.0 4.0 8233 chr4 319976 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328209 3` UTR,3` UTR CG32850 +,PMCA - chr4_12_320001 chr4_320001 RAL-502 2642 chr4 368695 368709 chr4 368847 368861 4 151 3.0 3.0 3.0 1.0 166 chr4 368695 intron Hcf + chr4 368778 intron Hcf + chr4 368861 intron Hcf + chr4_4_365001 chr4_365001 RAL-502 2643 chr4 671589 671631 chr4 680192 680208 Tirant 14 8597 7.5 9.5 8.5 1.5 8619 chr4 671589 intron CG11360 + chr4 675898 intron CG11360 + chr4 680208 intron CG11360 + chr4_14_675001 chr4_675001 RAL-502 2644 chr4 700601 700621 chr4 700898 700915 4 296 4.0 3.0 3.5 0.9 314 chr4 700601 intron ey + chr4 700758 intron ey + chr4 700915 intron ey + chr4_4_700001 chr4_700001 RAL-502 2645 chr4 799794 799811 chr4 799886 799912 4 96 9.5 3.5 6.5 0.5 118 chr4 799794 exon CG11231 + chr4 799853 exon CG11231 + chr4 799912 exon CG11231 + chr4_4_795001 chr4_795001 RAL-502 2646 chr4 905549 905592 chr4 905648 905694 20 101 3.5 3.5 3.5 4.4 145 chr4 905549 5` UTR unc-13 - chr4 905622 5` UTR unc-13 - chr4 905694 5` UTR unc-13 - chr4_20_905001 chr4_905001 RAL-502 2647 chr4 1134143 1134191 chr4 1135073 1135120 9 930 3.0 4.0 3.5 2.0 977 chr4 1134143 intron CG11155 + chr4 1134632 intron CG11155 + chr4 1135120 exon CG11155 + chr4_9_1130001 chr4_1130001 RAL-502 2648 chr4 1135859 1135903 chr4 1136215 1136259 INE-1 7 357 30.0 30.0 30.0 0.2 400 chr4 1135859 3` UTR CG11155 + chr4 1136059 3` UTR CG11155 + chr4 1136259 3` UTR CG11155 + chr4_7_1135001 chr4_1135001 RAL-502 2649 chr4 1231227 1231256 chr4 1231363 1231407 5 148 0.5 2.0 1.2 2.3 180 chr4 1231227 intron Caps + chr4 1231317 intron Caps + chr4 1231407 intron Caps + chr4_5_1230001 chr4_1230001 RAL-502 2650 chr4 1250545 1250572 chr4 1250651 1250676 5 105 4.0 4.0 4.0 1.0 131 chr4 1250545 intron Caps + chr4 1250610 intron Caps + chr4 1250676 intron Caps + chr4_5_1250001 chr4_1250001 RAL-502 2651 chrX 295840 295881 chrX 303480 303521 412 11 7638 2.5 6.5 4.5 2.0 7681 chrX 295840 intron CG3777 + chrX 299680 intron CG3777 + chrX 303521 intron CG3777 + chrX_11_295001 chrX_295001 RAL-502 2652 chrX 318459 318497 chrX 323565 323601 flea 8 5104 4.0 4.5 4.2 1.5 5142 chrX 318459 intron,intron CG3777 +,CG32816 - chrX 321030 intron,intron CG3777 +,CG32816 - chrX 323601 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-502 2653 chrX 428400 428448 chrX 434605 434653 3S18 17 6205 3.0 2.0 2.5 4.9 6253 chrX 428400 intron CG32816 - chrX 431526 intron CG32816 - chrX 434653 intron CG32816 - chrX_17_430001 chrX_430001 RAL-502 2654 chrX 447254 447301 chrX 447428 447476 15 172 6.0 5.0 5.5 2.3 222 chrX 447254 intron CG32816 - chrX 447365 intron CG32816 - chrX 447476 intron CG32816 - chrX_15_445001 chrX_445001 RAL-502 2655 chrX 450345 450393 chrX 450443 450491 17 97 2.5 3.0 2.8 4.5 146 chrX 450345 intron CG32816 - chrX 450418 intron CG32816 - chrX 450491 intron CG32816 - chrX_17_450001 chrX_450001 RAL-502 2656 chrX 551408 551452 chrX 558990 558990 412 8 7575 9.0 3.0 6.0 1.1 7582 chrX 551408 intron Appl + chrX 555199 intron Appl + chrX 558990 intron Appl + chrX_8_555001 chrX_555001 RAL-502 2657 chrX 667627 667683 chrX 667731 667787 12 103 1.0 3.0 2.0 4.0 160 chrX 667627 intergenic not near genes chrX 667707 intergenic not near genes chrX 667787 intergenic not near genes chrX_12_665001 chrX_665001 RAL-502 2658 chrX 670268 670294 chrX 670350 670375 7 88 0.0 1.5 0.8 3.9 107 chrX 670268 intergenic not near genes chrX 670322 intergenic not near genes chrX 670375 intergenic not near genes chrX_7_670001 chrX_670001 RAL-502 2659 chrX 680847 680858 chrX 680937 680941 4 91 4.5 4.5 4.5 0.7 94 chrX 680847 intergenic not near genes chrX 680894 intergenic not near genes chrX 680941 intergenic not near genes chrX_4_680001 chrX_680001 RAL-502 2660 chrX 706771 706824 chrX 707161 707175 7 379 0.0 7.0 3.5 1.6 404 chrX 706771 intron sdk + chrX 706973 intron sdk + chrX 707175 intron sdk + chrX_7_705001 chrX_705001 RAL-502 2661 chrX 718312 718358 chrX 718412 718458 10 98 1.5 3.0 2.2 3.1 146 chrX 718312 intron sdk + chrX 718385 intron sdk + chrX 718458 intron sdk + chrX_10_715001 chrX_715001 RAL-502 2662 chrX 778106 778160 chrX 778216 778269 13 103 2.0 0.0 1.0 6.5 163 chrX 778106 intron fz3 + chrX 778188 intron fz3 + chrX 778269 intron fz3 + chrX_13_775001 chrX_775001 RAL-502 2663 chrX 780585 780595 chrX 780681 780682 5 94 6.0 0.5 3.2 1.2 97 chrX 780585 intron fz3 + chrX 780634 intron fz3 + chrX 780682 intron fz3 + chrX_5_780001 chrX_780001 RAL-502 2664 chrX 806770 806817 chrX 806886 806933 6 115 2.5 3.0 2.8 1.6 163 chrX 806770 intron Sec22 + chrX 806852 intron Sec22 + chrX 806933 intron Sec22 + chrX_6_805001 chrX_805001 RAL-502 2665 chrX 827589 827634 chrX 835393 835466 roo 9 7816 3.5 0.0 1.8 3.2 7877 chrX 827589 intron CG43867 - chrX 831528 intron CG43867 - chrX 835466 intron CG43867 - chrX_9_830001 chrX_830001 RAL-502 2666 chrX 906687 906720 chrX 908496 908529 S-element 13 1807 8.0 7.0 7.5 1.5 1842 chrX 906687 intron CG43867 - chrX 907608 intron CG43867 - chrX 908529 intron CG43867 - chrX_13_905001 chrX_905001 RAL-502 2667 chrX 1308101 1308138 chrX 1308203 1308241 18 101 8.0 4.5 6.2 2.5 140 chrX 1308101 intron DAAM - chrX 1308171 intron DAAM - chrX 1308241 intron DAAM - chrX_18_1305001 chrX_1305001 RAL-502 2668 chrX 1357765 1357803 chrX 1367954 1367993 Doc 10 10189 4.5 7.0 5.8 1.5 10228 chrX 1357765 intergenic png - chrX 1362879 intergenic not near genes chrX 1367993 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-502 2669 chrX 1402255 1402291 chrX 1402633 1402648 10 373 5.0 3.5 4.2 1.9 393 chrX 1402255 intergenic not near genes chrX 1402452 intergenic not near genes chrX 1402648 intergenic not near genes chrX_10_1400001 chrX_1400001 RAL-502 2670 chrX 1428577 1428620 chrX 1428683 1428726 15 105 4.5 8.5 6.5 2.0 149 chrX 1428577 intron futsch + chrX 1428652 intron futsch + chrX 1428726 intron futsch + chrX_15_1425001 chrX_1425001 RAL-502 2671 chrX 1518019 1518071 chrX 1523441 1523493 jockey 7 5417 3.0 3.0 3.0 1.8 5474 chrX 1518019 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523493 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-502 2672 chrX 1627968 1627981 chrX 1635456 1635469 gtwin 4 7488 7.5 4.5 6.0 0.6 7501 chrX 1627968 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-502 2673 chrX 1930539 1930559 chrX 1938112 1938112 opus 6 7578 1.5 0.5 1.0 3.0 7573 chrX 1930539 intergenic CG11596 + chrX 1934326 intergenic not near genes chrX 1938112 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-502 2674 chrX 2146634 2146686 chrX 2146746 2146790 7 110 4.5 5.5 5.0 1.2 156 chrX 2146634 intron Pgd + chrX 2146712 intron Pgd + chrX 2146790 intron Pgd + chrX_7_2145001 chrX_2145001 RAL-502 2675 chrX 2254447 2254459 chrX 2254538 2254542 7 92 12.5 3.0 7.8 0.8 95 chrX 2254447 3` UTR CG3078 - chrX 2254494 3` UTR CG3078 - chrX 2254542 3` UTR CG3078 - chrX_7_2250001 chrX_2250001 RAL-502 2676 chrX 2399826 2399871 chrX 2408190 2408209 roo 8 8353 3.0 3.5 3.2 1.9 8383 chrX 2399826 intergenic not near genes chrX 2404018 intergenic not near genes chrX 2408209 intergenic not near genes chrX_8_2400001 chrX_2400001 RAL-502 2677 chrX 2568196 2568221 chrX 2568441 2568484 5 259 3.5 3.5 3.5 1.1 288 chrX 2568196 intron Pdfr + chrX 2568340 intron Pdfr + chrX 2568484 intron Pdfr + chrX_5_2565001 chrX_2565001 RAL-502 2678 chrX 2578791 2578844 chrX 2578903 2578956 15 108 2.5 6.5 4.5 2.7 165 chrX 2578791 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578956 intergenic Vha36-3 -,Pdfr + chrX_15_2575001 chrX_2575001 RAL-502 2679 chrX 2664371 2664419 chrX 2665536 2665565 1360 13 1160 2.0 4.5 3.2 3.1 1194 chrX 2664371 intron sgg + chrX 2664968 intron sgg + chrX 2665565 intron sgg + chrX_13_2660001 chrX_2660001 RAL-502 2680 chrX 2844880 2844928 chrX 2852310 2852358 mdg1 12 7428 3.5 1.5 2.5 3.4 7478 chrX 2844880 intron kirre + chrX 2848619 intron kirre + chrX 2852358 intron kirre + chrX_12_2845001 chrX_2845001 RAL-502 2681 chrX 3058002 3058051 chrX 3058263 3058312 pogo 10 261 2.5 3.0 2.8 2.6 310 chrX 3058002 intron kirre + chrX 3058157 intron kirre + chrX 3058312 intron kirre + chrX_10_3055001 chrX_3055001 RAL-502 2682 chrX 3075633 3075663 chrX 3080959 3080989 Transpac 6 5326 4.5 10.0 7.2 0.7 5356 chrX 3075633 intron kirre + chrX 3078311 intron kirre + chrX 3080989 intron kirre + chrX_6_3075001 chrX_3075001 RAL-502 2683 chrX 3208123 3208175 chrX 3208226 3208275 9 102 2.0 2.0 2.0 3.0 152 chrX 3208123 intron dnc + chrX 3208199 intron dnc + chrX 3208275 intron dnc + chrX_9_3205001 chrX_3205001 RAL-502 2684 chrX 3218490 3218538 chrX 3227659 3227707 roo 4 9169 0.0 0.5 0.2 3.3 9217 chrX 3218490 intron dnc + chrX 3223098 intron dnc + chrX 3227707 intron dnc + chrX_4_3220001 chrX_3220001 RAL-502 2685 chrX 3363728 3363767 chrX 3363920 3363960 9 192 1.5 2.0 1.8 3.2 232 chrX 3363728 intergenic not near genes chrX 3363844 intergenic not near genes chrX 3363960 intergenic not near genes chrX_9_3360001 chrX_3360001 RAL-502 2686 chrX 3408972 3408993 chrX 3409069 3409087 8 96 0.5 7.0 3.8 1.7 115 chrX 3408972 intron,intron CR44999 +,CG12535 - chrX 3409030 intron,intron CR44999 +,CG12535 - chrX 3409087 intron,intron CR44999 +,CG12535 - chrX_8_3405001 chrX_3405001 RAL-502 2687 chrX 3408997 3409007 chrX 3409068 3409103 4 89 0.5 6.0 3.2 1.0 106 chrX 3408997 intron,intron CR44999 +,CG12535 - chrX 3409050 intron,intron CR44999 +,CG12535 - chrX 3409103 intron,intron CR44999 +,CG12535 - chrX_4_3405001 chrX_3405001 RAL-502 2688 chrX 3415008 3415045 chrX 3421213 3421249 3S18 11 6205 2.5 4.5 3.5 2.4 6241 chrX 3415008 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421249 intron,intron CR44999 +,CG12535 - chrX_11_3415001 chrX_3415001 RAL-502 2689 chrX 3493086 3493115 chrX 3502251 3502284 roo 6 9175 3.0 1.0 2.0 2.0 9198 chrX 3493086 intron,intron CR44999 +,Gas8 - chrX 3497685 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-502 2690 chrX 3595022 3595043 chrX 3595090 3595139 10 86 0.5 3.5 2.0 3.3 117 chrX 3595022 intron AstA-R1 + chrX 3595080 intron AstA-R1 + chrX 3595139 intron AstA-R1 + chrX_10_3595001 chrX_3595001 RAL-502 2691 chrX 3597544 3597584 chrX 3619723 3619774 roo 12 22183 6.5 5.0 5.8 1.8 22230 chrX 3597544 intron AstA-R1 + chrX 3608659 intron AstA-R1 + chrX 3619774 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-502 2692 chrX 3657397 3657446 chrX 3657497 3657533 16 96 5.5 4.0 4.8 2.8 136 chrX 3657397 intron AstA-R1 + chrX 3657465 intron AstA-R1 + chrX 3657533 intron AstA-R1 + chrX_16_3655001 chrX_3655001 RAL-502 2693 chrX 3713085 3713136 chrX 3713213 3713265 7 127 3.0 3.0 3.0 1.8 180 chrX 3713085 intron Rala - chrX 3713175 intron Rala - chrX 3713265 intron Rala - chrX_7_3710001 chrX_3710001 RAL-502 2694 chrX 3881257 3881304 chrX 3881416 3881457 15 158 1.0 4.0 2.5 4.3 200 chrX 3881257 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881457 exon VhaAC39-1 + chrX_15_3880001 chrX_3880001 RAL-502 2695 chrX 3986851 3986894 chrX 3994499 3994547 412 15 7648 3.5 3.0 3.2 3.6 7696 chrX 3986851 intergenic not near genes chrX 3990699 intergenic not near genes chrX 3994547 intergenic not near genes chrX_15_3990001 chrX_3990001 RAL-502 2696 chrX 4093278 4093284 chrX 4093348 4093372 4 88 8.5 3.5 6.0 0.6 94 chrX 4093278 intergenic not near genes chrX 4093325 intergenic not near genes chrX 4093372 intergenic not near genes chrX_4_4090001 chrX_4090001 RAL-502 2697 chrX 4132651 4132697 chrX 4132839 4132884 6 188 4.5 6.0 5.2 1.0 233 chrX 4132651 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132884 intergenic Fas2 -,GlcAT-I + chrX_6_4130001 chrX_4130001 RAL-502 2698 chrX 4157871 4157921 chrX 4164926 4164975 297 8 7054 4.0 5.5 4.8 1.4 7104 chrX 4157871 intron Fas2 - chrX 4161423 intron Fas2 - chrX 4164975 intron Fas2 - chrX_8_4160001 chrX_4160001 RAL-502 2699 chrX 4293752 4293756 chrX 4294808 4294812 5 1056 26.5 22.0 24.2 0.2 1060 chrX 4293752 intergenic not near genes chrX 4294282 intergenic not near genes chrX 4294812 intergenic not near genes chrX_5_4290001 chrX_4290001 RAL-502 2700 chrX 4293758 4293798 chrX 4294802 4294845 13 1050 19.5 20.0 19.8 0.6 1087 chrX 4293758 intergenic not near genes chrX 4294302 intergenic not near genes chrX 4294845 intergenic not near genes chrX_13_4290001 chrX_4290001 RAL-502 2701 chrX 4293287 4293332 chrX 4295674 4295721 25 2391 38.0 34.5 36.2 0.7 2434 chrX 4293287 intergenic not near genes chrX 4294504 intergenic not near genes chrX 4295721 intergenic not near genes chrX_25_4290001 chrX_4290001 RAL-502 2702 chrX 4388284 4388288 chrX 4388442 4388446 4 158 2.0 2.5 2.2 1.2 162 chrX 4388284 intron CR32773 - chrX 4388365 intron CR32773 - chrX 4388446 intron CR32773 - chrX_4_4385001 chrX_4385001 RAL-502 2703 chrX 4515831 4515841 chrX 4515929 4515939 5 97 5.5 3.5 4.5 0.9 108 chrX 4515831 intron CR32773 - chrX 4515885 intron CR32773 - chrX 4515939 intron CR32773 - chrX_5_4515001 chrX_4515001 RAL-502 2704 chrX 4525738 4525771 chrX 4525850 4525883 5 111 3.5 2.0 2.8 1.3 145 chrX 4525738 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525883 intron CR32773 - chrX_5_4525001 chrX_4525001 RAL-502 2705 chrX 4700372 4700422 chrX 4700735 4700785 jockey 7 360 4.0 3.5 3.8 1.5 413 chrX 4700372 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700785 3` UTR ctp + chrX_7_4700001 chrX_4700001 RAL-502 2706 chrX 4723578 4723586 chrX 4723653 4723682 4 92 5.5 6.0 5.8 0.6 104 chrX 4723578 intron Proc-R + chrX 4723630 intron Proc-R + chrX 4723682 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-502 2707 chrX 4759377 4759403 chrX 4759473 4759496 8 95 4.5 7.0 5.8 1.2 119 chrX 4759377 intergenic not near genes chrX 4759436 intergenic not near genes chrX 4759496 intergenic not near genes chrX_8_4755001 chrX_4755001 RAL-502 2708 chrX 4763264 4763284 chrX 4763756 4763785 Stalker4 4 501 3.0 6.0 4.5 0.7 521 chrX 4763264 intergenic not near genes chrX 4763524 intergenic not near genes chrX 4763785 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-502 2709 chrX 4792363 4792403 chrX 4792815 4792854 jockey 7 452 3.0 5.0 4.0 1.4 491 chrX 4792363 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792854 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-502 2710 chrX 4827956 4827999 chrX 4835347 4835373 Stalker4 8 7382 4.0 3.0 3.5 1.8 7417 chrX 4827956 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835373 intergenic not near genes chrX_8_4830001 chrX_4830001 RAL-502 2711 chrX 4967903 4967919 chrX 4968004 4968025 5 106 0.0 2.5 1.2 2.3 122 chrX 4967903 intron CR44833 - chrX 4967964 intron CR44833 - chrX 4968025 intron CR44833 - chrX_5_4965001 chrX_4965001 RAL-502 2712 chrX 4990024 4990074 chrX 4997258 4997308 roo 9 7233 4.0 3.5 3.8 1.9 7284 chrX 4990024 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997308 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-502 2713 chrX 5096276 5096306 chrX 5103850 5103867 springer 4 7576 2.5 5.0 3.8 0.8 7591 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103867 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-502 2714 chrX 5134789 5134828 chrX 5134910 5134949 19 119 3.0 6.0 4.5 3.5 160 chrX 5134789 intron,intron CG15465 +,rg + chrX 5134869 intron,intron CG15465 +,rg + chrX 5134949 intron,intron CG15465 +,rg + chrX_19_5130001 chrX_5130001 RAL-502 2715 chrX 5329430 5329476 chrX 5329547 5329591 9 116 2.0 0.0 1.0 4.5 161 chrX 5329430 intergenic CG3309 -,XRCC1 + chrX 5329510 intergenic CG3309 -,XRCC1 + chrX 5329591 intergenic CG3309 -,XRCC1 + chrX_9_5325001 chrX_5325001 RAL-502 2716 chrX 5345423 5345472 chrX 5345555 5345604 15 131 1.5 4.5 3.0 3.8 181 chrX 5345423 intron SK + chrX 5345514 intron SK + chrX 5345604 intron SK + chrX_15_5345001 chrX_5345001 RAL-502 2717 chrX 5349260 5349309 chrX 5349357 5349404 10 96 2.5 5.5 4.0 2.0 144 chrX 5349260 intron SK + chrX 5349332 intron SK + chrX 5349404 intron SK + chrX_10_5345001 chrX_5345001 RAL-502 2718 chrX 5363629 5363665 chrX 5363728 5363762 6 100 3.5 2.0 2.8 1.6 133 chrX 5363629 intron SK + chrX 5363696 intron SK + chrX 5363762 intron SK + chrX_6_5360001 chrX_5360001 RAL-502 2719 chrX 5473565 5473585 chrX 5473661 5473679 6 95 4.0 4.0 4.0 1.2 114 chrX 5473565 intron SPR + chrX 5473622 intron SPR + chrX 5473679 intron SPR + chrX_6_5470001 chrX_5470001 RAL-502 2720 chrX 5524825 5524858 chrX 5528704 5528741 412 7 3882 4.5 0.5 2.5 2.0 3916 chrX 5524825 intergenic snoRNA:Psi28S-3342 - chrX 5526783 intergenic not near genes chrX 5528741 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-502 2721 chrX 5647154 5647168 chrX 5647263 5647270 5 107 0.0 9.0 4.5 0.9 116 chrX 5647154 intron CG42492 - chrX 5647212 intron CG42492 - chrX 5647270 intron CG42492 - chrX_5_5645001 chrX_5645001 RAL-502 2722 chrX 5695714 5695760 chrX 5696391 5696396 10 662 4.5 2.5 3.5 2.2 682 chrX 5695714 intergenic not near genes chrX 5696055 intergenic not near genes chrX 5696396 intergenic not near genes chrX_10_5695001 chrX_5695001 RAL-502 2723 chrX 5798875 5798890 chrX 5799028 5799072 8 173 3.5 5.5 4.5 1.5 197 chrX 5798875 intergenic not near genes chrX 5798974 intergenic not near genes chrX 5799072 intergenic not near genes chrX_8_5795001 chrX_5795001 RAL-502 2724 chrX 5883793 5883835 chrX 5884054 5884095 pogo 9 261 3.0 3.5 3.2 2.1 302 chrX 5883793 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884095 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-502 2725 chrX 5884144 5884193 chrX 5884405 5884451 pogo 15 260 7.0 4.0 5.5 2.3 307 chrX 5884144 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884451 intron CR45668 - chrX_15_5880001 chrX_5880001 RAL-502 2726 chrX 6009224 6009270 chrX 6009583 6009625 14 358 4.0 0.5 2.2 4.4 401 chrX 6009224 intron mab-21 - chrX 6009424 intron mab-21 - chrX 6009625 intron mab-21 - chrX_14_6005001 chrX_6005001 RAL-502 2727 chrX 6097797 6097826 chrX 6098072 6098099 10 274 6.5 3.5 5.0 1.7 302 chrX 6097797 intron Nep1 + chrX 6097948 intron Nep1 + chrX 6098099 intron Nep1 + chrX_10_6095001 chrX_6095001 RAL-502 2728 chrX 6171572 6171600 chrX 6179015 6179055 Quasimodo 10 7450 1.5 2.5 2.0 3.3 7483 chrX 6171572 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179055 intron Ca-alpha1T - chrX_10_6175001 chrX_6175001 RAL-502 2729 chrX 6215523 6215532 chrX 6215617 6215628 6 93 3.0 7.0 5.0 1.0 105 chrX 6215523 intergenic not near genes chrX 6215576 intergenic not near genes chrX 6215628 intergenic not near genes chrX_6_6215001 chrX_6215001 RAL-502 2730 chrX 6335214 6335242 chrX 6337736 6337771 Tirant 6 2528 0.0 7.5 3.8 1.2 2557 chrX 6335214 intergenic not near genes chrX 6336492 intergenic not near genes chrX 6337771 5` UTR CG3842 + chrX_6_6335001 chrX_6335001 RAL-502 2731 chrX 6388648 6388680 chrX 6388744 6388776 8 96 4.5 1.0 2.8 2.1 128 chrX 6388648 intergenic not near genes chrX 6388712 intergenic not near genes chrX 6388776 intergenic not near genes chrX_8_6385001 chrX_6385001 RAL-502 2732 chrX 6392860 6392897 chrX 6397639 6397681 Doc 15 4783 2.0 6.0 4.0 3.0 4821 chrX 6392860 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397681 intergenic not near genes chrX_15_6395001 chrX_6395001 RAL-502 2733 chrX 6412973 6412996 chrX 6413050 6413068 5 76 4.5 0.5 2.5 1.4 95 chrX 6412973 intergenic not near genes chrX 6413020 intergenic not near genes chrX 6413068 intergenic not near genes chrX_5_6410001 chrX_6410001 RAL-502 2734 chrX 6445320 6445336 chrX 6451098 6451114 297 4 5778 3.0 4.0 3.5 0.9 5794 chrX 6445320 intron CG42340 - chrX 6448217 intron CG42340 - chrX 6451114 intron CG42340 - chrX_4_6445001 chrX_6445001 RAL-502 2735 chrX 6462184 6462202 chrX 6462469 6462477 4 281 7.0 5.0 6.0 0.6 293 chrX 6462184 intron CG42340 - chrX 6462330 intron CG42340 - chrX 6462477 intron CG42340 - chrX_4_6460001 chrX_6460001 RAL-502 2736 chrX 6562802 6562818 chrX 6571303 6571320 Tirant 5 8501 9.0 2.5 5.8 0.7 8518 chrX 6562802 intron CG34417 + chrX 6567061 intron CG34417 + chrX 6571320 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-502 2737 chrX 6562822 6562847 chrX 6571298 6571347 Tirant 6 8487 7.0 2.0 4.5 1.1 8525 chrX 6562822 intron CG34417 + chrX 6567084 intron CG34417 + chrX 6571347 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-502 2738 chrX 6618456 6618474 chrX 6618554 6618568 6 96 8.0 6.0 7.0 0.8 112 chrX 6618456 intron pigs + chrX 6618512 intron pigs + chrX 6618568 intron pigs + chrX_6_6615001 chrX_6615001 RAL-502 2739 chrX 6624702 6624740 chrX 6624814 6624869 8 122 1.5 3.5 2.5 2.3 167 chrX 6624702 intron pigs + chrX 6624786 intron pigs + chrX 6624869 intron pigs + chrX_8_6620001 chrX_6620001 RAL-502 2740 chrX 6629770 6629794 chrX 6629877 6629900 6 107 3.0 3.5 3.2 1.4 130 chrX 6629770 intron pigs + chrX 6629835 intron pigs + chrX 6629900 intron pigs + chrX_6_6625001 chrX_6625001 RAL-502 2741 chrX 6897571 6897580 chrX 7243786 7243796 5 346216 1.0 6.5 3.8 1.0 346225 chrX 6897571 intergenic not near genes chrX 7070684 exon CG4607 + chrX 7243796 intron CR44357 - chrX_5_7070001 chrX_7070001 RAL-502 2742 chrX 6897669 6897711 chrX 6897799 6897841 4 128 1.0 3.0 2.0 1.3 172 chrX 6897669 intergenic not near genes chrX 6897755 intergenic not near genes chrX 6897841 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-502 2743 chrX 6901360 6901379 chrX 6901456 6901473 6 95 3.5 2.5 3.0 1.5 113 chrX 6901360 intergenic not near genes chrX 6901416 intergenic not near genes chrX 6901473 intergenic not near genes chrX_6_6900001 chrX_6900001 RAL-502 2744 chrX 6948380 6948409 chrX 6948463 6948507 12 95 2.5 3.0 2.8 3.2 127 chrX 6948380 intron CG14431 + chrX 6948444 intron CG14431 + chrX 6948507 intron CG14431 + chrX_12_6945001 chrX_6945001 RAL-502 2745 chrX 6976469 6976522 chrX 6976585 6976637 8 114 2.5 1.5 2.0 2.7 168 chrX 6976469 intron ogre - chrX 6976553 intron ogre - chrX 6976637 intron ogre - chrX_8_6975001 chrX_6975001 RAL-502 2746 chrX 6989497 6989529 chrX 6989596 6989636 8 106 2.0 4.5 3.2 1.9 139 chrX 6989497 intron ogre - chrX 6989566 intron ogre - chrX 6989636 intron ogre - chrX_8_6985001 chrX_6985001 RAL-502 2747 chrX 7023599 7023612 chrX 7031009 7031022 Tabor 4 7410 8.5 5.0 6.8 0.5 7423 chrX 7023599 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031022 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-502 2748 chrX 7023614 7023628 chrX 7030991 7031036 Tabor 4 7400 8.0 2.0 5.0 0.7 7422 chrX 7023614 intron CG12541 - chrX 7027325 intron CG12541 - chrX 7031036 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-502 2749 chrX 7125228 7125271 chrX 7134407 7134450 roo 12 9179 1.5 4.0 2.8 3.2 9222 chrX 7125228 intergenic not near genes chrX 7129839 intergenic not near genes chrX 7134450 intergenic not near genes chrX_12_7125001 chrX_7125001 RAL-502 2750 chrX 7294493 7294517 chrX 7294611 7294614 4 111 6.5 3.5 5.0 0.7 121 chrX 7294493 intron,intron CR44357 -,CG1677 - chrX 7294554 intron,intron CR44357 -,CG1677 - chrX 7294614 intron,intron CR44357 -,CG1677 - chrX_4_7290001 chrX_7290001 RAL-502 2751 chrX 7350568 7350601 chrX 7350666 7350705 13 102 0.5 4.5 2.5 3.7 137 chrX 7350568 intron,intron CR44357 -,CG1677 - chrX 7350636 intron,intron CR44357 -,CG1677 - chrX 7350705 intron,intron CR44357 -,CG1677 - chrX_13_7350001 chrX_7350001 RAL-502 2752 chrX 7373217 7373236 chrX 7373750 7373788 7 544 3.0 7.5 5.2 1.1 571 chrX 7373217 intron,intron CR44357 -,CG1677 - chrX 7373502 intron,intron CR44357 -,CG1677 - chrX 7373788 intron,intron CR44357 -,CG1677 - chrX_7_7370001 chrX_7370001 RAL-502 2753 chrX 7470210 7470222 chrX 7470318 7470330 4 108 2.5 4.5 3.5 0.9 120 chrX 7470210 intergenic not near genes chrX 7470270 intergenic not near genes chrX 7470330 intergenic not near genes chrX_4_7470001 chrX_7470001 RAL-502 2754 chrX 7570638 7570668 chrX 7570774 7570822 5 150 5.0 3.0 4.0 1.0 184 chrX 7570638 intergenic not near genes chrX 7570730 intergenic not near genes chrX 7570822 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-502 2755 chrX 7702512 7702522 chrX 7702606 7702634 4 107 0.5 6.0 3.2 1.0 122 chrX 7702512 intron CHES-1-like - chrX 7702573 intron CHES-1-like - chrX 7702634 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-502 2756 chrX 7702886 7702923 chrX 7703343 7703382 jockey 12 457 8.5 5.5 7.0 1.5 496 chrX 7702886 intron CHES-1-like - chrX 7703134 intron CHES-1-like - chrX 7703382 intron CHES-1-like - chrX_12_7700001 chrX_7700001 RAL-502 2757 chrX 7721361 7721402 chrX 7721461 7721505 14 101 7.5 7.0 7.2 1.7 144 chrX 7721361 intergenic not near genes chrX 7721433 intergenic not near genes chrX 7721505 intergenic not near genes chrX_14_7720001 chrX_7720001 RAL-502 2758 chrX 7832416 7832458 chrX 7832525 7832567 13 107 3.0 3.5 3.2 3.1 151 chrX 7832416 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832567 intron CG1402 + chrX_13_7830001 chrX_7830001 RAL-502 2759 chrX 7845714 7845756 chrX 7847214 7847265 hopper2 8 1504 3.5 7.5 5.5 1.2 1551 chrX 7845714 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847265 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-502 2760 chrX 7881853 7881871 chrX 7881955 7881973 4 102 1.0 1.5 1.2 1.8 120 chrX 7881853 intergenic Ir7f -,Ir7e - chrX 7881913 intergenic Ir7f -,Ir7e - chrX 7881973 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-502 2761 chrX 8063724 8063761 chrX 8063841 8063841 6 112 2.5 2.5 2.5 1.7 117 chrX 8063724 intron mys + chrX 8063782 intron mys + chrX 8063841 5` UTR mys + chrX_6_8060001 chrX_8060001 RAL-502 2762 chrX 8079903 8079933 chrX 8080033 8080062 10 130 3.0 5.5 4.2 1.9 159 chrX 8079903 exon CG2254 - chrX 8079982 intron CG2254 - chrX 8080062 intron CG2254 - chrX_10_8075001 chrX_8075001 RAL-502 2763 chrX 8092267 8092318 chrX 8092372 8092423 13 103 4.0 3.5 3.8 2.7 156 chrX 8092267 intron Ubc-E2H - chrX 8092345 intron Ubc-E2H - chrX 8092423 intron Ubc-E2H - chrX_13_8090001 chrX_8090001 RAL-502 2764 chrX 8450760 8450800 chrX 8450856 8450896 8 96 0.5 3.5 2.0 2.7 136 chrX 8450760 intron org-1 - chrX 8450828 intron org-1 - chrX 8450896 intron org-1 - chrX_8_8450001 chrX_8450001 RAL-502 2765 chrX 8506013 8506060 chrX 8506111 8506157 8 96 4.5 4.5 4.5 1.5 144 chrX 8506013 intron CG33181 + chrX 8506085 intron CG33181 + chrX 8506157 intron CG33181 + chrX_8_8505001 chrX_8505001 RAL-502 2766 chrX 8506514 8506542 chrX 8506740 8506770 10 228 3.5 2.0 2.8 2.6 256 chrX 8506514 intron CG33181 + chrX 8506642 intron CG33181 + chrX 8506770 intron CG33181 + chrX_10_8505001 chrX_8505001 RAL-502 2767 chrX 8509105 8509149 chrX 8509202 8509245 6 96 1.5 2.5 2.0 2.0 140 chrX 8509105 intron CG33181 + chrX 8509175 intron CG33181 + chrX 8509245 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-502 2768 chrX 8536740 8536780 chrX 8536836 8536876 19 95 7.0 8.0 7.5 2.2 136 chrX 8536740 intron Nrg + chrX 8536808 intron Nrg + chrX 8536876 intron Nrg + chrX_19_8535001 chrX_8535001 RAL-502 2769 chrX 8843804 8843837 chrX 8843906 8843941 11 104 2.0 0.0 1.0 5.5 137 chrX 8843804 intron CG12075 + chrX 8843872 intron CG12075 + chrX 8843941 intron CG12075 + chrX_11_8840001 chrX_8840001 RAL-502 2770 chrX 8885647 8885700 chrX 8885767 8885817 15 118 0.0 4.5 2.2 4.7 170 chrX 8885647 intron Moe - chrX 8885732 intron Moe - chrX 8885817 intron Moe - chrX_15_8885001 chrX_8885001 RAL-502 2771 chrX 8894981 8895001 chrX 8895087 8895107 8 106 4.0 3.0 3.5 1.8 126 chrX 8894981 intron Moe - chrX 8895044 intron Moe - chrX 8895107 intron Moe - chrX_8_8895001 chrX_8895001 RAL-502 2772 chrX 8927570 8927610 chrX 8929859 8929900 NOF 12 2288 6.0 2.5 4.2 2.3 2330 chrX 8927570 intron rdgA + chrX 8928735 intron rdgA + chrX 8929900 intron rdgA + chrX_12_8925001 chrX_8925001 RAL-502 2773 chrX 8948746 8948784 chrX 8956267 8956314 roo 12 7529 3.0 2.5 2.8 3.2 7568 chrX 8948746 intron rdgA + chrX 8952530 intron rdgA + chrX 8956314 intron rdgA + chrX_12_8950001 chrX_8950001 RAL-502 2774 chrX 8958269 8958286 chrX 8958366 8958388 8 100 1.5 3.0 2.2 2.5 119 chrX 8958269 intron rdgA + chrX 8958328 intron rdgA + chrX 8958388 intron rdgA + chrX_8_8955001 chrX_8955001 RAL-502 2775 chrX 9187994 9188016 chrX 9188091 9188111 4 96 2.5 0.5 1.5 1.6 117 chrX 9187994 3` UTR mei-P26 + chrX 9188052 3` UTR mei-P26 + chrX 9188111 3` UTR mei-P26 + chrX_4_9185001 chrX_9185001 RAL-502 2776 chrX 9224935 9224957 chrX 9225078 9225106 8 147 0.0 3.5 1.8 2.9 171 chrX 9224935 intergenic not near genes chrX 9225020 intergenic CG15370 + chrX 9225106 intergenic CG15370 + chrX_8_9225001 chrX_9225001 RAL-502 2777 chrX 9380404 9380407 chrX 15012587 15012587 5 5632182 18.5 10.0 14.2 0.3 5632183 chrX 9380404 intron mgl - chrX 12196496 exon Ten-a + chrX 15012587 intron hiw - chrX_5_12195001 chrX_12195001 RAL-502 2778 chrX 9391554 9391597 chrX 9391720 9391761 17 165 2.5 1.5 2.0 5.7 207 chrX 9391554 intron mgl - chrX 9391658 intron mgl - chrX 9391761 intron mgl - chrX_17_9390001 chrX_9390001 RAL-502 2779 chrX 9508123 9508159 chrX 9509660 9509695 jockey 6 1536 3.0 3.5 3.2 1.4 1572 chrX 9508123 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509695 intron CG32700 - chrX_6_9505001 chrX_9505001 RAL-502 2780 chrX 9575785 9575824 chrX 9576114 9576136 mdg3 10 330 4.5 7.5 6.0 1.4 351 chrX 9575785 intron,exon CG32699 -,CG42395 - chrX 9575960 intron,intron CG32699 -,CG42395 - chrX 9576136 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-502 2781 chrX 9708527 9708541 chrX 9708607 9708622 5 89 4.0 4.0 4.0 1.0 95 chrX 9708527 intergenic not near genes chrX 9708574 intergenic not near genes chrX 9708622 intergenic not near genes chrX_5_9705001 chrX_9705001 RAL-502 2782 chrX 9708544 9708555 chrX 9708606 9708651 5 85 2.5 4.5 3.5 1.1 107 chrX 9708544 intergenic not near genes chrX 9708598 intergenic not near genes chrX 9708651 intergenic not near genes chrX_5_9705001 chrX_9705001 RAL-502 2783 chrX 9821098 9821123 chrX 9821221 9821245 4 123 3.0 6.0 4.5 0.7 147 chrX 9821098 intron CG32698 + chrX 9821172 intron CG32698 + chrX 9821245 intron CG32698 + chrX_4_9820001 chrX_9820001 RAL-502 2784 chrX 7995775 7995775 chrX 9845361 9845361 5 1849586 6.5 12.0 9.2 0.5 1849586 chrX 7995775 5` UTR Tbh + chrX 8920568 intron rdgA + chrX 9845361 intron CG32698 + chrX_5_8920001 chrX_8920001 RAL-502 2785 chrX 10035414 10035464 chrX 10035520 10035533 14 94 4.0 8.0 6.0 2.0 119 chrX 10035414 exon Cht6 + chrX 10035474 exon Cht6 + chrX 10035533 exon Cht6 + chrX_14_10035001 chrX_10035001 RAL-502 2786 chrX 10138196 10138241 chrX 10145720 10145761 412 8 7523 4.5 5.0 4.8 1.4 7565 chrX 10138196 intron,intron RhoU +,CR44894 - chrX 10141978 intron,intron RhoU +,CR44894 - chrX 10145761 intron,intron RhoU +,CR44894 - chrX_8_10140001 chrX_10140001 RAL-502 2787 chrX 10151913 10151932 chrX 10152010 10152024 4 94 4.5 4.5 4.5 0.7 111 chrX 10151913 intron CR44894 - chrX 10151968 intron CR44894 - chrX 10152024 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-502 2788 chrX 10154265 10154307 chrX 10154361 10154390 8 89 2.0 1.0 1.5 3.2 125 chrX 10154265 intron,intron CR44894 -,CG12645 + chrX 10154328 intron,intron CR44894 -,CG12645 + chrX 10154390 intron,exon CR44894 -,CG12645 + chrX_8_10150001 chrX_10150001 RAL-502 2789 chrX 10500184 10500217 chrX 10500285 10500323 7 100 8.0 0.0 4.0 1.4 139 chrX 10500184 intron spri - chrX 10500254 intron spri - chrX 10500323 intron spri - chrX_7_10500001 chrX_10500001 RAL-502 2790 chrX 10508617 10508662 chrX 10508709 10508759 9 96 2.0 4.0 3.0 2.2 142 chrX 10508617 intron spri - chrX 10508688 intron spri - chrX 10508759 intron spri - chrX_9_10505001 chrX_10505001 RAL-502 2791 chrX 10532483 10532528 chrX 10532582 10532624 13 94 2.0 4.5 3.2 3.1 141 chrX 10532483 intron spri - chrX 10532554 intron spri - chrX 10532624 intron spri - chrX_13_10530001 chrX_10530001 RAL-502 2792 chrX 10550315 10550360 chrX 10550413 10550458 7 97 2.5 2.0 2.2 2.2 143 chrX 10550315 intron spri - chrX 10550386 intron spri - chrX 10550458 intron spri - chrX_7_10550001 chrX_10550001 RAL-502 2793 chrX 10550838 10550876 chrX 10552325 10552345 hobo 5 1477 1.0 4.0 2.5 1.4 1507 chrX 10550838 intron spri - chrX 10551592 intron spri - chrX 10552345 intron spri - chrX_5_10550001 chrX_10550001 RAL-502 2794 chrX 10686033 10686084 chrX 10691186 10691239 roo 11 5156 3.5 4.0 3.8 2.3 5206 chrX 10686033 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691239 intron X11Lbeta + chrX_11_10685001 chrX_10685001 RAL-502 2795 chrX 10772671 10772691 chrX 10772757 10772767 Tirant 7 88 4.0 2.0 3.0 1.8 96 chrX 10772671 intron CG15211 + chrX 10772719 intron CG15211 + chrX 10772767 intron CG15211 + chrX_7_10770001 chrX_10770001 RAL-502 2796 chrX 10803023 10803049 chrX 10803121 10803126 6 92 12.0 12.5 12.2 0.5 103 chrX 10803023 intron Imp - chrX 10803074 intron Imp - chrX 10803126 intron Imp - chrX_6_10800001 chrX_10800001 RAL-502 2797 chrX 10931164 10931172 chrX 10931321 10931351 4 174 2.5 13.5 8.0 0.4 187 chrX 10931164 5` UTR Myo10A + chrX 10931258 5` UTR Myo10A + chrX 10931351 5` UTR Myo10A + chrX_4_10930001 chrX_10930001 RAL-502 2798 chrX 10959762 10959775 chrX 10959858 10959879 7 106 1.5 1.5 1.5 2.8 117 chrX 10959762 intron Myo10A + chrX 10959820 intron Myo10A + chrX 10959879 intron Myo10A + chrX_7_10955001 chrX_10955001 RAL-502 2799 chrX 10981053 10981090 chrX 10981385 10981400 8 329 2.0 2.0 2.0 2.7 347 chrX 10981053 intron CG42339 - chrX 10981226 intron CG42339 - chrX 10981400 intron CG42339 - chrX_8_10980001 chrX_10980001 RAL-502 2800 chrX 11167769 11167800 chrX 11167870 11167917 10 101 3.0 1.5 2.2 3.1 148 chrX 11167769 intergenic antdh - chrX 11167843 intergenic antdh - chrX 11167917 intergenic antdh - chrX_10_11165001 chrX_11165001 RAL-502 2801 chrX 11205272 11205304 chrX 11205368 11205400 13 95 4.5 4.0 4.2 2.5 128 chrX 11205272 intergenic not near genes chrX 11205336 intergenic not near genes chrX 11205400 intergenic not near genes chrX_13_11205001 chrX_11205001 RAL-502 2802 chrX 11254148 11254200 chrX 11254279 11254331 14 128 6.0 2.5 4.2 2.7 183 chrX 11254148 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254331 intron CG44422 - chrX_14_11250001 chrX_11250001 RAL-502 2803 chrX 11268547 11268594 chrX 11270054 11270102 hopper2 12 1504 1.5 6.5 4.0 2.4 1555 chrX 11268547 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270102 intron CG44422 - chrX_12_11265001 chrX_11265001 RAL-502 2804 chrX 11312044 11312091 chrX 11319408 11319461 Stalker2 8 7356 2.0 2.0 2.0 2.7 7417 chrX 11312044 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319461 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-502 2805 chrX 11535024 11535044 chrX 11541512 11541534 Burdock 5 6488 5.5 5.5 5.5 0.8 6510 chrX 11535024 intron Drak + chrX 11538279 intron Drak + chrX 11541534 intron Drak + chrX_5_11535001 chrX_11535001 RAL-502 2806 chrX 11554863 11554905 chrX 11555260 11555304 5 397 7.0 20.5 13.8 0.3 441 chrX 11554863 3` UTR Drak + chrX 11555084 3` UTR CG1572 - chrX 11555304 3` UTR CG1572 - chrX_5_11555001 chrX_11555001 RAL-502 2807 chrX 11627829 11627857 chrX 11627926 11627968 9 108 4.5 1.5 3.0 2.2 139 chrX 11627829 intron Ptp10D + chrX 11627898 intron Ptp10D + chrX 11627968 intron Ptp10D + chrX_9_11625001 chrX_11625001 RAL-502 2808 chrX 11633409 11633428 chrX 11640483 11640500 297 7 7074 6.0 3.0 4.5 1.3 7091 chrX 11633409 intron Ptp10D + chrX 11636954 intron Ptp10D + chrX 11640500 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-502 2809 chrX 11633430 11633441 chrX 11640480 11640515 297 5 7069 4.0 2.5 3.2 1.2 7085 chrX 11633430 intron Ptp10D + chrX 11636972 intron Ptp10D + chrX 11640515 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-502 2810 chrX 11645095 11645137 chrX 11648284 11648326 NOF 4 3189 4.5 1.5 3.0 1.0 3231 chrX 11645095 intron Ptp10D + chrX 11646710 intron Ptp10D + chrX 11648326 intron Ptp10D + chrX_4_11645001 chrX_11645001 RAL-502 2811 chrX 11651177 11651223 chrX 11651288 11651319 10 102 4.0 2.5 3.2 2.4 142 chrX 11651177 intron Ptp10D + chrX 11651248 intron Ptp10D + chrX 11651319 intron Ptp10D + chrX_10_11650001 chrX_11650001 RAL-502 2812 chrX 11685720 11685743 chrX 11685830 11685831 4 104 6.0 3.5 4.8 0.7 111 chrX 11685720 intron bif + chrX 11685776 intron bif + chrX 11685831 intron bif + chrX_4_11685001 chrX_11685001 RAL-502 2813 chrX 11719855 11719906 chrX 11719954 11719968 9 94 2.0 0.5 1.2 4.1 113 chrX 11719855 3` UTR prtp + chrX 11719912 intergenic prtp +,Tango10 + chrX 11719968 intergenic prtp +,Tango10 + chrX_9_11715001 chrX_11715001 RAL-502 2814 chrX 11915627 11915672 chrX 11915940 11915985 16 312 3.0 2.5 2.8 4.2 358 chrX 11915627 intron pot - chrX 11915806 intron pot - chrX 11915985 intron pot - chrX_16_11915001 chrX_11915001 RAL-502 2815 chrX 11922347 11922383 chrX 11922500 11922536 13 153 4.0 4.5 4.2 2.5 189 chrX 11922347 exon Sclp - chrX 11922442 intron Sclp - chrX 11922536 intron Sclp - chrX_13_11920001 chrX_11920001 RAL-502 2816 chrX 12069035 12069090 chrX 12069141 12069196 15 97 2.5 0.0 1.2 6.8 161 chrX 12069035 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069116 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069196 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_15_12065001 chrX_12065001 RAL-502 2817 chrX 12071204 12071238 chrX 12071399 12071433 9 193 1.5 1.5 1.5 3.6 229 chrX 12071204 intron,intron,3` UTR CR43960 +,Ten-a +,CG34323 + chrX 12071318 intron,intron CR43960 +,Ten-a + chrX 12071433 intron,intron CR43960 +,Ten-a + chrX_9_12070001 chrX_12070001 RAL-502 2818 chrX 12094016 12094057 chrX 12094128 12094165 11 106 3.0 4.0 3.5 2.4 149 chrX 12094016 intron,intron CR43960 +,Ten-a + chrX 12094090 intron,intron CR43960 +,Ten-a + chrX 12094165 intron,intron CR43960 +,Ten-a + chrX_11_12090001 chrX_12090001 RAL-502 2819 chrX 12106879 12106897 chrX 12107107 12107125 9 227 0.0 5.0 2.5 2.6 246 chrX 12106879 intron,intron CR43960 +,Ten-a + chrX 12107002 intron,intron CR43960 +,Ten-a + chrX 12107125 intron,intron CR43960 +,Ten-a + chrX_9_12105001 chrX_12105001 RAL-502 2820 chrX 12168120 12168146 chrX 12173582 12173608 I-element 4 5460 3.5 1.5 2.5 1.1 5488 chrX 12168120 intron Ten-a + chrX 12170864 intron Ten-a + chrX 12173608 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-502 2821 chrX 12202782 12202801 chrX 12202886 12202905 7 103 1.0 9.0 5.0 1.2 123 chrX 12202782 intron Ten-a + chrX 12202844 intron Ten-a + chrX 12202905 intron Ten-a + chrX_7_12200001 chrX_12200001 RAL-502 2822 chrX 12272832 12272864 chrX 12272930 12272962 4 98 2.0 3.0 2.5 1.1 130 chrX 12272832 intron Ten-a + chrX 12272897 intron Ten-a + chrX 12272962 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-502 2823 chrX 12301944 12301967 chrX 12303262 12303274 X-element 4 1316 6.0 2.0 4.0 0.8 1330 chrX 12301944 intron Ten-a + chrX 12302609 intron Ten-a + chrX 12303274 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-502 2824 chrX 12350765 12350782 chrX 12350853 12350874 10 97 4.5 0.0 2.2 3.1 109 chrX 12350765 intergenic not near genes chrX 12350820 intergenic not near genes chrX 12350874 intergenic not near genes chrX_10_12350001 chrX_12350001 RAL-502 2825 chrX 12363318 12363368 chrX 12363417 12363467 17 96 2.0 1.0 1.5 6.8 149 chrX 12363318 intergenic not near genes chrX 12363392 intergenic not near genes chrX 12363467 intergenic not near genes chrX_17_12360001 chrX_12360001 RAL-502 2826 chrX 12375474 12375503 chrX 12375592 12375620 6 117 5.5 0.0 2.8 1.6 146 chrX 12375474 intergenic Ir11a - chrX 12375547 intergenic Ir11a - chrX 12375620 exon Ir11a - chrX_6_12375001 chrX_12375001 RAL-502 2827 chrX 12381838 12381900 chrX 12385771 12385820 flea 5 3922 0.0 5.0 2.5 1.4 3982 chrX 12381838 intergenic not near genes chrX 12383829 intergenic not near genes chrX 12385820 intergenic not near genes chrX_5_12380001 chrX_12380001 RAL-502 2828 chrX 12430933 12430955 chrX 12431025 12431053 7 92 2.0 0.5 1.2 3.2 120 chrX 12430933 intergenic not near genes chrX 12430993 intergenic not near genes chrX 12431053 intergenic not near genes chrX_7_12430001 chrX_12430001 RAL-502 2829 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 4 2701135 12.0 17.5 14.8 0.3 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_4_11195001 chrX_11195001 RAL-502 2830 chrX 12557137 12557163 chrX 12557233 12557245 7 89 5.0 5.5 5.2 1.1 108 chrX 12557137 intron CG43921 - chrX 12557191 intron CG43921 - chrX 12557245 intron CG43921 - chrX_7_12555001 chrX_12555001 RAL-502 2831 chrX 12670644 12670655 chrX 12670743 12670762 4 101 5.5 4.5 5.0 0.7 118 chrX 12670644 intron Tis11 + chrX 12670703 intron Tis11 + chrX 12670762 intron Tis11 + chrX_4_12670001 chrX_12670001 RAL-502 2832 chrX 12670659 12670667 chrX 12670742 12670764 4 97 4.5 4.5 4.5 0.7 105 chrX 12670659 intron Tis11 + chrX 12670712 intron Tis11 + chrX 12670764 intron Tis11 + chrX_4_12670001 chrX_12670001 RAL-502 2833 chrX 12752265 12752292 chrX 12752372 12752399 7 106 3.5 6.0 4.8 1.2 134 chrX 12752265 5` UTR CR44619 + chrX 12752332 5` UTR CR44619 + chrX 12752399 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-502 2834 chrX 12752295 12752309 chrX 12752366 12752415 6 100 1.5 3.5 2.5 1.7 120 chrX 12752295 5` UTR CR44619 + chrX 12752355 5` UTR CR44619 + chrX 12752415 5` UTR CR44619 + chrX_6_12750001 chrX_12750001 RAL-502 2835 chrX 12839899 12839950 chrX 12840244 12840295 8 340 3.0 5.5 4.2 1.5 396 chrX 12839899 intron Pde9 - chrX 12840097 intron Pde9 - chrX 12840295 intron Pde9 - chrX_8_12840001 chrX_12840001 RAL-502 2836 chrX 12859449 12859498 chrX 12859553 12859601 8 101 3.5 3.5 3.5 1.8 152 chrX 12859449 intron Pde9 - chrX 12859525 intron Pde9 - chrX 12859601 intron Pde9 - chrX_8_12855001 chrX_12855001 RAL-502 2837 chrX 12930591 12930608 chrX 12937712 12937741 HMS-Beagle 5 7132 4.0 6.5 5.2 0.8 7150 chrX 12930591 intron fne + chrX 12934166 intron fne + chrX 12937741 intron fne + chrX_5_12930001 chrX_12930001 RAL-502 2838 chrX 12960751 12960780 chrX 12960852 12960881 10 100 3.5 3.5 3.5 2.2 130 chrX 12960751 3` UTR CG32642 + chrX 12960816 intergenic CG32642 + chrX 12960881 intergenic CG32642 + chrX_10_12960001 chrX_12960001 RAL-502 2839 chrX 13061348 13061368 chrX 13061464 13061494 6 124 2.5 2.5 2.5 1.7 146 chrX 13061348 intron rad + chrX 13061421 intron rad + chrX 13061494 intron rad + chrX_6_13060001 chrX_13060001 RAL-502 2840 chrX 13146582 13146623 chrX 13146688 13146731 11 107 1.0 4.0 2.5 3.1 149 chrX 13146582 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146731 intron CG32645 + chrX_11_13145001 chrX_13145001 RAL-502 2841 chrX 13161675 13161717 chrX 13161772 13161814 9 95 2.0 2.5 2.2 2.8 139 chrX 13161675 3` UTR CG12096 + chrX 13161744 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161814 3` UTR,3` UTR CG12096 +,CG34411 - chrX_9_13160001 chrX_13160001 RAL-502 2842 chrX 13172330 13172382 chrX 13172426 13172478 15 95 5.0 3.0 4.0 3.0 148 chrX 13172330 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172478 intron CG34411 - chrX_15_13170001 chrX_13170001 RAL-502 2843 chrX 13236886 13236902 chrX 13236974 13236995 8 99 0.0 3.5 1.8 2.9 109 chrX 13236886 intron mew - chrX 13236940 intron mew - chrX 13236995 intron mew - chrX_8_13235001 chrX_13235001 RAL-502 2844 chrX 13382163 13382186 chrX 13382259 13382283 7 96 4.5 4.0 4.2 1.3 120 chrX 13382163 intron Rbp1-like - chrX 13382223 intron Rbp1-like - chrX 13382283 intron Rbp1-like - chrX_7_13380001 chrX_13380001 RAL-502 2845 chrX 13429446 13429487 chrX 13430615 13430656 jockey 13 1167 7.5 5.0 6.2 1.8 1210 chrX 13429446 intergenic not near genes chrX 13430051 intergenic not near genes chrX 13430656 intergenic not near genes chrX_13_13430001 chrX_13430001 RAL-502 2846 chrX 13442121 13442130 chrX 13442232 13442241 5 111 0.0 4.5 2.2 1.6 120 chrX 13442121 intergenic not near genes chrX 13442181 intergenic not near genes chrX 13442241 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-502 2847 chrX 13442134 13442171 chrX 13442231 13442282 7 108 0.0 4.5 2.2 2.2 148 chrX 13442134 intergenic not near genes chrX 13442208 intergenic not near genes chrX 13442282 intergenic not near genes chrX_7_13440001 chrX_13440001 RAL-502 2848 chrX 13463626 13463677 chrX 13469223 13469274 mdg3 13 5595 6.0 1.5 3.8 2.7 5648 chrX 13463626 intron Neto + chrX 13466450 intron Neto + chrX 13469274 intron Neto + chrX_13_13465001 chrX_13465001 RAL-502 2849 chrX 13560545 13560581 chrX 13560646 13560682 8 101 7.0 1.5 4.2 1.5 137 chrX 13560545 intergenic not near genes chrX 13560614 intergenic not near genes chrX 13560682 intergenic not near genes chrX_8_13560001 chrX_13560001 RAL-502 2850 chrX 13700112 13700124 chrX 13700219 13700219 4 104 10.5 6.5 8.5 0.4 107 chrX 13700112 intron,intron CG9940 -,NnaD + chrX 13700166 intron,intron CG9940 -,NnaD + chrX 13700219 intron,intron CG9940 -,NnaD + chrX_4_13700001 chrX_13700001 RAL-502 2851 chrX 13700132 13700143 chrX 13700208 13700249 5 88 5.5 5.0 5.2 0.8 117 chrX 13700132 intron,intron CG9940 -,NnaD + chrX 13700190 intron,intron CG9940 -,NnaD + chrX 13700249 intron,intron CG9940 -,NnaD + chrX_5_13700001 chrX_13700001 RAL-502 2852 chrX 13934291 13934319 chrX 13934375 13934422 6 99 1.0 2.5 1.8 2.1 131 chrX 13934291 intron mamo - chrX 13934356 intron mamo - chrX 13934422 intron mamo - chrX_6_13930001 chrX_13930001 RAL-502 2853 chrX 13935495 13935511 chrX 13935598 13935614 4 102 6.5 9.0 7.8 0.5 119 chrX 13935495 intron mamo - chrX 13935554 intron mamo - chrX 13935614 intron mamo - chrX_4_13935001 chrX_13935001 RAL-502 2854 chrX 13937965 13938002 chrX 13941256 13941273 I-element 8 3281 4.5 0.5 2.5 2.3 3308 chrX 13937965 intron mamo - chrX 13939619 intron mamo - chrX 13941273 intron mamo - chrX_8_13935001 chrX_13935001 RAL-502 2855 chrX 13057301 13057304 chrX 13966949 13966949 4 909646 9.0 3.0 6.0 0.6 909648 chrX 13057301 intron rad + chrX 13512125 intron Neto + chrX 13966949 intron mamo - chrX_4_13510001 chrX_13510001 RAL-502 2856 chrX 14027076 14027106 chrX 14027182 14027204 8 102 2.0 4.5 3.2 1.9 128 chrX 14027076 intergenic not near genes chrX 14027140 intergenic not near genes chrX 14027204 intergenic not near genes chrX_8_14025001 chrX_14025001 RAL-502 2857 chrX 14105036 14105055 chrX 14114171 14114200 roo 9 9148 2.0 1.0 1.5 3.6 9164 chrX 14105036 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114200 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-502 2858 chrX 14157573 14157590 chrX 14163250 14163256 297 4 5670 6.0 1.5 3.8 0.8 5683 chrX 14157573 intergenic not near genes chrX 14160414 intergenic not near genes chrX 14163256 intergenic not near genes chrX_4_14160001 chrX_14160001 RAL-502 2859 chrX 14188061 14188087 chrX 14188164 14188190 13 103 5.0 3.5 4.2 2.5 129 chrX 14188061 intergenic CG12481 + chrX 14188126 intergenic CG12481 + chrX 14188190 intergenic CG12481 + chrX_13_14185001 chrX_14185001 RAL-502 2860 chrX 14190733 14190783 chrX 14191009 14191058 9 271 2.5 0.0 1.2 4.1 325 chrX 14190733 3` UTR CG11585 + chrX 14190896 intergenic CG11585 +,CG13403 - chrX 14191058 intergenic CG13403 -,CG11585 + chrX_9_14190001 chrX_14190001 RAL-502 2861 chrX 14209453 14209488 chrX 14209564 14209599 9 111 3.5 5.5 4.5 1.6 146 chrX 14209453 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209526 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209599 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-502 2862 chrX 14484805 14484980 chrX 14484927 14485089 13 113 0.0 0.0 0.0 13.0 284 chrX 14484805 intergenic not near genes chrX 14484947 intergenic not near genes chrX 14485089 intergenic not near genes chrX_13_14480001 chrX_14480001 RAL-502 2863 chrX 14531342 14531380 chrX 14531447 14531489 13 108 3.0 1.0 2.0 4.3 147 chrX 14531342 intergenic not near genes chrX 14531416 intergenic not near genes chrX 14531489 intergenic not near genes chrX_13_14530001 chrX_14530001 RAL-502 2864 chrX 14589686 14589691 chrX 14589946 14589950 pogo 4 260 4.0 0.5 2.2 1.2 264 chrX 14589686 intron CG9413 - chrX 14589818 intron CG9413 - chrX 14589950 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-502 2865 chrX 14636447 14636484 chrX 14641908 14641937 I-element 11 5459 2.0 3.0 2.5 3.1 5490 chrX 14636447 intron NetA - chrX 14639192 intron NetA - chrX 14641937 intron NetA - chrX_11_14635001 chrX_14635001 RAL-502 2866 chrX 14636485 14636491 chrX 14641906 14641947 I-element 4 5439 1.5 2.5 2.0 1.3 5462 chrX 14636485 intron NetA - chrX 14639216 intron NetA - chrX 14641947 intron NetA - chrX_4_14635001 chrX_14635001 RAL-502 2867 chrX 14649294 14649336 chrX 14649390 14649432 7 90 1.0 8.0 4.5 1.3 138 chrX 14649294 intron NetA - chrX 14649363 intron NetA - chrX 14649432 intron NetA - chrX_7_14645001 chrX_14645001 RAL-502 2868 chrX 14778017 14778054 chrX 14782834 14782870 Doc 8 4817 3.5 2.0 2.8 2.1 4853 chrX 14778017 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782870 intergenic Ag5r2 - chrX_8_14780001 chrX_14780001 RAL-502 2869 chrX 14816812 14816854 chrX 14816909 14816952 10 97 1.0 3.0 2.0 3.3 140 chrX 14816812 intron rut - chrX 14816882 intron rut - chrX 14816952 intron rut - chrX_10_14815001 chrX_14815001 RAL-502 2870 chrX 14818742 14818797 chrX 14823966 14823989 copia 10 5213 2.0 3.5 2.8 2.6 5247 chrX 14818742 intron rut - chrX 14821366 intron rut - chrX 14823989 intron rut - chrX_10_14820001 chrX_14820001 RAL-502 2871 chrX 14900830 14900876 chrX 14901042 14901088 10 212 4.0 2.5 3.2 2.4 258 chrX 14900830 intron Flo2 + chrX 14900959 intron Flo2 + chrX 14901088 intron Flo2 + chrX_10_14900001 chrX_14900001 RAL-502 2872 chrX 14936851 14936876 chrX 14946128 14946153 roo 9 9276 3.5 4.5 4.0 1.8 9302 chrX 14936851 intron pdgy - chrX 14941502 intron pdgy - chrX 14946153 intron pdgy - chrX_9_14940001 chrX_14940001 RAL-502 2873 chrX 14968058 14968099 chrX 14968157 14968198 7 97 0.0 3.0 1.5 2.8 140 chrX 14968058 intron eag + chrX 14968128 intron eag + chrX 14968198 intron eag + chrX_7_14965001 chrX_14965001 RAL-502 2874 chrX 14981712 14981721 chrX 14981811 14981820 4 99 3.0 3.5 3.2 1.0 108 chrX 14981712 intron eag + chrX 14981766 intron eag + chrX 14981820 intron eag + chrX_4_14980001 chrX_14980001 RAL-502 2875 chrX 15025213 15025219 chrX 15025327 15025332 4 114 0.0 6.0 3.0 1.0 119 chrX 15025213 intron,intron hiw -,be + chrX 15025272 intron,intron hiw -,be + chrX 15025332 intron,intron hiw -,be + chrX_4_15025001 chrX_15025001 RAL-502 2876 chrX 15025223 15025241 chrX 15025322 15025355 4 107 0.0 5.5 2.8 1.1 132 chrX 15025223 intron,intron hiw -,be + chrX 15025289 intron,intron hiw -,be + chrX 15025355 intron,intron hiw -,be + chrX_4_15025001 chrX_15025001 RAL-502 2877 chrX 15070177 15070360 chrX 15070290 15070465 6 113 0.0 0.0 0.0 6.0 288 chrX 15070177 3` UTR Lsd-2 - chrX 15070321 3` UTR Lsd-2 - chrX 15070465 3` UTR Lsd-2 - chrX_6_15070001 chrX_15070001 RAL-502 2878 chrX 15202050 15202097 chrX 15202172 15202223 8 125 5.0 5.0 5.0 1.3 173 chrX 15202050 intergenic not near genes chrX 15202136 intergenic not near genes chrX 15202223 intergenic not near genes chrX_8_15200001 chrX_15200001 RAL-502 2879 chrX 15273716 15273736 chrX 15274868 15274898 1360 7 1169 3.0 5.0 4.0 1.4 1182 chrX 15273716 intergenic not near genes chrX 15274307 intergenic not near genes chrX 15274898 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-502 2880 chrX 15277626 15277666 chrX 15277729 15277751 12 98 1.5 3.0 2.2 3.8 125 chrX 15277626 intergenic not near genes chrX 15277688 intergenic not near genes chrX 15277751 intergenic not near genes chrX_12_15275001 chrX_15275001 RAL-502 2881 chrX 15358292 15358338 chrX 15358399 15358446 9 106 1.0 4.0 2.5 2.6 154 chrX 15358292 intron acj6 - chrX 15358369 intron acj6 - chrX 15358446 intron acj6 - chrX_9_15355001 chrX_15355001 RAL-502 2882 chrX 15395713 15395737 chrX 15395820 15395844 4 107 0.0 5.0 2.5 1.1 131 chrX 15395713 intron Cngl - chrX 15395778 intron Cngl - chrX 15395844 intron Cngl - chrX_4_15395001 chrX_15395001 RAL-502 2883 chrX 15413044 15413088 chrX 15417351 15417355 Juan 10 4308 1.0 4.5 2.8 2.6 4311 chrX 15413044 intron Cngl - chrX 15415200 intron Cngl - chrX 15417355 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-502 2884 chrX 15431589 15431598 chrX 15431663 15431699 6 88 1.5 5.0 3.2 1.4 110 chrX 15431589 intron Cngl - chrX 15431644 intron Cngl - chrX 15431699 intron Cngl - chrX_6_15430001 chrX_15430001 RAL-502 2885 chrX 15435688 15435702 chrX 15436117 15436152 rover 4 443 0.0 2.5 1.2 1.8 464 chrX 15435688 intron Cngl - chrX 15435920 intron Cngl - chrX 15436152 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-502 2886 chrX 15565619 15565665 chrX 15565724 15565771 7 106 1.5 3.0 2.2 2.2 152 chrX 15565619 intergenic not near genes chrX 15565695 intergenic not near genes chrX 15565771 intergenic not near genes chrX_7_15565001 chrX_15565001 RAL-502 2887 chrX 15619360 15619394 chrX 15619522 15619549 8 161 0.5 0.5 0.5 5.3 189 chrX 15619360 intron sog - chrX 15619454 intron sog - chrX 15619549 intron sog - chrX_8_15615001 chrX_15615001 RAL-502 2888 chrX 15898421 15898440 chrX 15898595 15898614 6 173 10.5 7.5 9.0 0.6 193 chrX 15898421 intron shi + chrX 15898518 intron shi + chrX 15898614 intron shi + chrX_6_15895001 chrX_15895001 RAL-502 2889 chrX 16100542 16100587 chrX 16100638 16100687 4 99 1.0 2.0 1.5 1.6 145 chrX 16100542 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100687 intron,intron CG42353 -,CG42354 - chrX_4_16100001 chrX_16100001 RAL-502 2890 chrX 16222762 16222797 chrX 16231132 16231166 roo 8 8370 0.0 2.5 1.2 3.6 8404 chrX 16222762 intergenic not near genes chrX 16226964 intergenic not near genes chrX 16231166 intergenic not near genes chrX_8_16225001 chrX_16225001 RAL-502 2891 chrX 16295505 16295521 chrX 16295609 16295625 4 103 2.0 0.0 1.0 2.0 120 chrX 16295505 intron CG9911 - chrX 16295565 intron CG9911 - chrX 16295625 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-502 2892 chrX 16407211 16407258 chrX 16407316 16407358 15 97 8.5 6.5 7.5 1.8 147 chrX 16407211 intron CG4301 + chrX 16407284 intron CG4301 + chrX 16407358 intron CG4301 + chrX_15_16405001 chrX_16405001 RAL-502 2893 chrX 16492627 16492660 chrX 16498224 16498257 mdg3 14 5596 4.0 2.0 3.0 3.5 5630 chrX 16492627 intron para - chrX 16495442 intron para - chrX 16498257 intron para - chrX_14_16495001 chrX_16495001 RAL-502 2894 chrX 16564653 16564679 chrX 16564712 16564739 9 62 4.0 2.0 3.0 2.2 86 chrX 16564653 3` UTR CanA-14F - chrX 16564696 3` UTR CanA-14F - chrX 16564739 3` UTR CanA-14F - chrX_9_16560001 chrX_16560001 RAL-502 2895 chrX 16570858 16570890 chrX 16570956 16570977 5 97 4.0 2.0 3.0 1.2 119 chrX 16570858 intron CanA-14F - chrX 16570918 intron CanA-14F - chrX 16570977 intron CanA-14F - chrX_5_16570001 chrX_16570001 RAL-502 2896 chrX 16650909 16650937 chrX 16651006 16651034 6 92 6.5 0.0 3.2 1.4 125 chrX 16650909 intergenic CG32573 +,CG42512 + chrX 16650972 intergenic CG32573 +,CG42512 + chrX 16651034 intergenic CG32573 +,CG42512 + chrX_6_16650001 chrX_16650001 RAL-502 2897 chrX 16668757 16668804 chrX 16668854 16668903 6 92 1.5 1.5 1.5 2.4 146 chrX 16668757 intergenic r +,CG13012 - chrX 16668830 3` UTR CG13012 - chrX 16668903 3` UTR CG13012 - chrX_6_16665001 chrX_16665001 RAL-502 2898 chrX 16677314 16677339 chrX 16677468 16677494 6 154 0.5 2.0 1.2 2.7 180 chrX 16677314 intergenic not near genes chrX 16677404 intergenic not near genes chrX 16677494 intergenic not near genes chrX_6_16675001 chrX_16675001 RAL-502 2899 chrX 16870060 16870097 chrX 16870162 16870200 9 102 1.0 2.5 1.8 3.2 140 chrX 16870060 intron CG13003 - chrX 16870130 intron CG13003 - chrX 16870200 intron CG13003 - chrX_9_16870001 chrX_16870001 RAL-502 2900 chrX 1053117 1053123 chrX 16983076 16983076 4 15929956 9.5 11.0 10.2 0.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-502 2901 chrX 17089582 17089625 chrX 17089728 17089771 15 145 3.0 1.5 2.2 4.7 189 chrX 17089582 intergenic not near genes chrX 17089676 intergenic not near genes chrX 17089771 intergenic not near genes chrX_15_17085001 chrX_17085001 RAL-502 2902 chrX 17195199 17195237 chrX 17200298 17200332 flea 11 5102 0.5 3.0 1.8 3.9 5133 chrX 17195199 3` UTR baz + chrX 17197766 3` UTR baz + chrX 17200332 3` UTR baz + chrX_11_17195001 chrX_17195001 RAL-502 2903 chrX 17229939 17229960 chrX 17230062 17230083 5 123 5.5 6.0 5.8 0.7 144 chrX 17229939 intergenic CG10597 - chrX 17230011 intergenic CG10597 - chrX 17230083 intergenic CG10597 - chrX_5_17230001 chrX_17230001 RAL-502 2904 chrX 17273808 17273831 chrX 17273953 17273983 6 151 3.0 7.0 5.0 1.0 175 chrX 17273808 exon f + chrX 17273896 intron f + chrX 17273983 intron f + chrX_6_17270001 chrX_17270001 RAL-502 2905 chrX 17313890 17313917 chrX 17313982 17314018 5 99 2.0 1.5 1.8 1.8 128 chrX 17313890 intergenic not near genes chrX 17313954 intergenic not near genes chrX 17314018 intergenic not near genes chrX_5_17310001 chrX_17310001 RAL-502 2906 chrX 17316357 17316384 chrX 17316461 17316488 4 104 3.0 0.0 1.5 1.6 131 chrX 17316357 intron B-H2 + chrX 17316422 intron B-H2 + chrX 17316488 intron B-H2 + chrX_4_17315001 chrX_17315001 RAL-502 2907 chrX 17352576 17352620 chrX 17352690 17352743 13 121 0.0 3.0 1.5 5.2 167 chrX 17352576 intergenic not near genes chrX 17352660 intergenic not near genes chrX 17352743 intergenic not near genes chrX_13_17350001 chrX_17350001 RAL-502 2908 chrX 17607235 17607289 chrX 17607377 17607431 17 138 1.0 2.0 1.5 6.8 196 chrX 17607235 intergenic X11L + chrX 17607333 intergenic X11L + chrX 17607431 intergenic not near genes chrX_17_17605001 chrX_17605001 RAL-502 2909 chrX 17680890 17680918 chrX 17680966 17681015 9 91 2.0 4.0 3.0 2.2 125 chrX 17680890 intron chas - chrX 17680952 intron chas - chrX 17681015 intron chas - chrX_9_17680001 chrX_17680001 RAL-502 2910 chrX 17685440 17685479 chrX 17685544 17685579 10 103 6.5 3.0 4.8 1.7 139 chrX 17685440 intron chas - chrX 17685510 intron chas - chrX 17685579 intron chas - chrX_10_17685001 chrX_17685001 RAL-502 2911 chrX 17708818 17708852 chrX 17708914 17708951 4 97 2.0 3.0 2.5 1.1 133 chrX 17708818 intron CG8173 - chrX 17708884 intron CG8173 - chrX 17708951 intron CG8173 - chrX_4_17705001 chrX_17705001 RAL-502 2912 chrX 17766345 17766377 chrX 17766455 17766463 5 106 2.0 3.0 2.5 1.4 118 chrX 17766345 intergenic not near genes chrX 17766404 intergenic not near genes chrX 17766463 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-502 2913 chrX 17784463 17784475 chrX 17784559 17784567 5 95 0.0 3.0 1.5 2.0 104 chrX 17784463 intergenic not near genes chrX 17784515 intergenic not near genes chrX 17784567 intergenic not near genes chrX_5_17780001 chrX_17780001 RAL-502 2914 chrX 17792941 17792982 chrX 17796257 17796294 flea 9 3313 3.0 5.0 4.0 1.8 3353 chrX 17792941 intron OdsH + chrX 17794618 intron OdsH + chrX 17796294 intron OdsH + chrX_9_17790001 chrX_17790001 RAL-502 2915 chrX 18029179 18029189 chrX 18029275 18029290 5 100 3.0 0.0 1.5 2.0 111 chrX 18029179 intron Sh - chrX 18029234 intron Sh - chrX 18029290 intron Sh - chrX_5_18025001 chrX_18025001 RAL-502 2916 chrX 18040409 18040460 chrX 18040517 18040568 9 105 2.0 2.5 2.2 2.8 159 chrX 18040409 intron Sh - chrX 18040488 intron Sh - chrX 18040568 intron Sh - chrX_9_18040001 chrX_18040001 RAL-502 2917 chrX 18122803 18122854 chrX 18122899 18122950 9 91 2.0 1.5 1.8 3.2 147 chrX 18122803 5` UTR CR45606 + chrX 18122876 5` UTR CR45606 + chrX 18122950 intergenic CR45606 + chrX_9_18120001 chrX_18120001 RAL-502 2918 chrX 18126788 18126837 chrX 18126885 18126934 7 96 1.0 1.5 1.2 3.2 146 chrX 18126788 intron CG32553 - chrX 18126861 5` UTR CG32553 - chrX 18126934 intron CG32553 - chrX_7_18125001 chrX_18125001 RAL-502 2919 chrX 18194053 18194097 chrX 18194608 18194651 BS 16 554 3.0 4.0 3.5 3.6 598 chrX 18194053 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194651 intron Frq2 + chrX_16_18190001 chrX_18190001 RAL-502 2920 chrX 18218019 18218064 chrX 18218155 18218201 6 136 5.5 2.5 4.0 1.2 182 chrX 18218019 intron CG33639 - chrX 18218110 intron CG33639 - chrX 18218201 intron CG33639 - chrX_6_18215001 chrX_18215001 RAL-502 2921 chrX 18429482 18429516 chrX 18434813 18434847 Transpac 7 5331 1.5 5.0 3.2 1.7 5365 chrX 18429482 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434847 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-502 2922 chrX 18474839 18474882 chrX 18474936 18474970 5 95 5.0 2.0 3.5 1.1 131 chrX 18474839 intron CG32547 - chrX 18474904 intron CG32547 - chrX 18474970 intron CG32547 - chrX_5_18470001 chrX_18470001 RAL-502 2923 chrX 18543093 18543116 chrX 18543191 18543192 5 97 2.5 3.0 2.8 1.3 99 chrX 18543093 intron Bx + chrX 18543142 intron Bx + chrX 18543192 intron Bx + chrX_5_18540001 chrX_18540001 RAL-502 2924 chrX 18558757 18558806 chrX 18558859 18558907 9 101 0.5 1.0 0.8 5.0 150 chrX 18558757 intron Bx + chrX 18558832 intron Bx + chrX 18558907 intron Bx + chrX_9_18555001 chrX_18555001 RAL-502 2925 chrX 18644996 18645047 chrX 18645114 18645165 16 115 1.0 2.0 1.5 6.4 169 chrX 18644996 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645165 intron Rip11 - chrX_16_18645001 chrX_18645001 RAL-502 2926 chrX 18698828 18698854 chrX 18698965 18698991 4 137 4.0 2.5 3.2 1.0 163 chrX 18698828 intergenic not near genes chrX 18698910 intergenic not near genes chrX 18698991 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-502 2927 chrX 18888639 18888686 chrX 18888746 18888791 8 99 0.5 4.5 2.5 2.3 152 chrX 18888639 3` UTR CG7332 + chrX 18888715 3` UTR CG7332 + chrX 18888791 3` UTR CG7332 + chrX_8_18885001 chrX_18885001 RAL-502 2928 chrX 18896497 18896546 chrX 18896628 18896677 8 130 1.5 3.0 2.2 2.5 180 chrX 18896497 3` UTR CG7349 + chrX 18896587 intergenic CG7349 + chrX 18896677 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-502 2929 chrX 18957050 18957100 chrX 18965733 18965777 roo 7 8680 0.5 1.5 1.0 3.5 8727 chrX 18957050 intron CG43759 + chrX 18961414 intron CG43759 + chrX 18965777 intron CG43759 + chrX_7_18960001 chrX_18960001 RAL-502 2930 chrX 18976590 18976633 chrX 18976961 18977007 5 373 2.5 3.0 2.8 1.3 417 chrX 18976590 intron CG43759 + chrX 18976798 intron CG43759 + chrX 18977007 intron CG43759 + chrX_5_18975001 chrX_18975001 RAL-502 2931 chrX 18988285 18988334 chrX 18988460 18988515 11 179 2.5 1.0 1.8 3.9 230 chrX 18988285 intron CG43759 + chrX 18988400 intron CG43759 + chrX 18988515 intron CG43759 + chrX_11_18985001 chrX_18985001 RAL-502 2932 chrX 19014373 19014387 chrX 19014441 19014486 6 88 3.0 4.0 3.5 1.3 113 chrX 19014373 intron CG43759 + chrX 19014430 intron CG43759 + chrX 19014486 intron CG43759 + chrX_6_19010001 chrX_19010001 RAL-502 2933 chrX 19060392 19060437 chrX 19065195 19065241 Doc 12 4803 3.0 6.0 4.5 2.2 4849 chrX 19060392 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065241 intron CG14190 + chrX_12_19060001 chrX_19060001 RAL-502 2934 chrX 19073666 19073692 chrX 19073773 19073798 5 106 4.5 1.5 3.0 1.2 132 chrX 19073666 intergenic not near genes chrX 19073732 intergenic not near genes chrX 19073798 intergenic not near genes chrX_5_19070001 chrX_19070001 RAL-502 2935 chrX 19080308 19080354 chrX 19080432 19080474 9 124 4.5 1.0 2.8 2.4 166 chrX 19080308 intergenic not near genes chrX 19080391 intergenic not near genes chrX 19080474 intergenic not near genes chrX_9_19080001 chrX_19080001 RAL-502 2936 chrX 19084072 19084112 chrX 19084212 19084241 4 132 0.0 0.0 0.0 4.0 169 chrX 19084072 intergenic CR45503 + chrX 19084156 intergenic CR45503 + chrX 19084241 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-502 2937 chrX 19097507 19097549 chrX 19097604 19097645 11 95 2.0 2.0 2.0 3.7 138 chrX 19097507 intergenic not near genes chrX 19097576 intergenic not near genes chrX 19097645 intergenic not near genes chrX_11_19095001 chrX_19095001 RAL-502 2938 chrX 19098754 19098783 chrX 19098852 19098881 6 96 2.0 4.0 3.0 1.5 127 chrX 19098754 intergenic not near genes chrX 19098818 intergenic not near genes chrX 19098881 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-502 2939 chrX 19101171 19101204 chrX 19101289 19101339 6 132 2.0 0.0 1.0 3.0 168 chrX 19101171 intergenic not near genes chrX 19101255 intergenic not near genes chrX 19101339 intergenic not near genes chrX_6_19100001 chrX_19100001 RAL-502 2940 chrX 19125672 19125721 chrX 19125820 19125825 14 141 3.0 7.5 5.2 2.3 153 chrX 19125672 intron tgy - chrX 19125748 intron tgy - chrX 19125825 intron tgy - chrX_14_19125001 chrX_19125001 RAL-502 2941 chrX 19131978 19132000 chrX 19132063 19132103 10 96 4.5 6.0 5.2 1.6 125 chrX 19131978 intergenic not near genes chrX 19132040 intergenic not near genes chrX 19132103 intergenic not near genes chrX_10_19130001 chrX_19130001 RAL-502 2942 chrX 19136534 19136584 chrX 19143474 19143488 412 9 6933 1.5 2.0 1.8 3.2 6954 chrX 19136534 intergenic not near genes chrX 19140011 intergenic not near genes chrX 19143488 3` UTR RhoGAP18B - chrX_9_19140001 chrX_19140001 RAL-502 2943 chrX 19170572 19170599 chrX 19170669 19170692 6 92 6.0 6.5 6.2 0.8 120 chrX 19170572 5` UTR Inx5 - chrX 19170632 5` UTR Inx5 - chrX 19170692 5` UTR Inx5 - chrX_6_19170001 chrX_19170001 RAL-502 2944 chrX 19176189 19176234 chrX 19176291 19176336 8 102 3.5 5.0 4.2 1.5 147 chrX 19176189 3` UTR CG7556 - chrX 19176262 3` UTR CG7556 - chrX 19176336 3` UTR CG7556 - chrX_8_19175001 chrX_19175001 RAL-502 2945 chrX 19182004 19182042 chrX 19182126 19182174 4 129 1.0 1.0 1.0 2.0 170 chrX 19182004 3` UTR CG7453 + chrX 19182089 intergenic CG7453 + chrX 19182174 intergenic CG7453 + chrX_4_19180001 chrX_19180001 RAL-502 2946 chrX 19185514 19185567 chrX 19185630 19185683 5 115 0.0 4.0 2.0 1.7 169 chrX 19185514 intron CG33253 + chrX 19185598 intron CG33253 + chrX 19185683 intron CG33253 + chrX_5_19185001 chrX_19185001 RAL-502 2947 chrX 19256634 19256676 chrX 19256733 19256775 9 96 5.5 3.0 4.2 1.7 141 chrX 19256634 intron rictor - chrX 19256704 intron rictor - chrX 19256775 exon rictor - chrX_9_19255001 chrX_19255001 RAL-502 2948 chrX 19280995 19281021 chrX 19281144 19281167 6 148 0.0 1.5 0.8 3.3 172 chrX 19280995 intergenic CG8034 - chrX 19281081 intergenic CG8034 - chrX 19281167 intergenic CG8034 - chrX_6_19280001 chrX_19280001 RAL-502 2949 chrX 19356971 19356999 chrX 19358432 19358446 NOF 4 1457 6.5 0.0 3.2 1.0 1475 chrX 19356971 intron kek5 + chrX 19357708 intron kek5 + chrX 19358446 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-502 2950 chrX 19380136 19380184 chrX 19380397 19380445 pogo 12 258 5.5 3.0 4.2 2.3 309 chrX 19380136 intron kek5 + chrX 19380290 intron kek5 + chrX 19380445 intron kek5 + chrX_12_19380001 chrX_19380001 RAL-502 2951 chrX 19404610 19404624 chrX 19404728 19404742 4 118 0.5 0.0 0.2 3.3 132 chrX 19404610 intron kek5 + chrX 19404676 intron kek5 + chrX 19404742 intron kek5 + chrX_4_19400001 chrX_19400001 RAL-502 2952 chrX 19472151 19472156 chrX 19472689 19472717 jockey 5 555 4.0 7.5 5.8 0.7 566 chrX 19472151 intergenic kek5 + chrX 19472434 intergenic not near genes chrX 19472717 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-502 2953 chrX 19500537 19500745 chrX 19500634 19500851 23 97 2.5 1.0 1.8 8.2 314 chrX 19500537 intron,intron CG14200 +,Pfrx + chrX 19500694 intron,intron CG14200 +,Pfrx + chrX 19500851 intron,intron CG14200 +,Pfrx + chrX_23_19500001 chrX_19500001 RAL-502 2954 chrX 19541409 19541445 chrX 19541509 19541537 7 96 0.5 0.0 0.2 5.8 128 chrX 19541409 intron CG32532 - chrX 19541473 intron CG32532 - chrX 19541537 intron CG32532 - chrX_7_19540001 chrX_19540001 RAL-502 2955 chrX 19593928 19593971 chrX 19594033 19594075 15 104 4.5 4.5 4.5 2.7 147 chrX 19593928 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594075 intron CG14205 + chrX_15_19590001 chrX_19590001 RAL-502 2956 chrX 19595716 19595743 chrX 19595825 19595849 9 107 1.5 3.5 2.5 2.6 133 chrX 19595716 intergenic CG14205 + chrX 19595782 intergenic CG14205 + chrX 19595849 intergenic CG14205 + chrX_9_19595001 chrX_19595001 RAL-502 2957 chrX 19710059 19710102 chrX 19711859 19711908 S-element 13 1801 2.5 4.5 3.5 2.9 1849 chrX 19710059 intron meso18E - chrX 19710984 intron meso18E - chrX 19711908 intron meso18E - chrX_13_19710001 chrX_19710001 RAL-502 2958 chrX 19729601 19729640 chrX 19729698 19729705 10 95 8.0 2.0 5.0 1.7 104 chrX 19729601 3` UTR CG12531 + chrX 19729653 3` UTR CG12531 + chrX 19729705 3` UTR CG12531 + chrX_10_19725001 chrX_19725001 RAL-502 2959 chrX 19975809 19975823 chrX 19976061 19976075 4 252 3.5 3.5 3.5 0.9 266 chrX 19975809 intergenic not near genes chrX 19975942 intergenic not near genes chrX 19976075 intergenic not near genes chrX_4_19975001 chrX_19975001 RAL-502 2960 chrX 19983860 19983900 chrX 19983947 19984000 6 98 1.0 3.5 2.2 1.9 140 chrX 19983860 intergenic not near genes chrX 19983930 intergenic not near genes chrX 19984000 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-502 2961 chrX 19992396 19992433 chrX 19992491 19992509 4 89 7.0 7.0 7.0 0.5 113 chrX 19992396 intergenic not near genes chrX 19992452 intergenic not near genes chrX 19992509 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-502 2962 chrX 20041514 20041561 chrX 20041614 20041661 10 100 2.5 4.5 3.5 2.2 147 chrX 20041514 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041661 intron Dop2R - chrX_10_20040001 chrX_20040001 RAL-502 2963 chrX 20145343 20145368 chrX 20145510 20145532 6 166 3.5 4.0 3.8 1.2 189 chrX 20145343 intergenic not near genes chrX 20145438 intergenic not near genes chrX 20145532 intergenic not near genes chrX_6_20145001 chrX_20145001 RAL-502 2964 chrX 20150370 20150385 chrX 20150479 20150485 5 104 0.5 5.0 2.8 1.3 115 chrX 20150370 intron CG9572 + chrX 20150428 intron CG9572 + chrX 20150485 intron CG9572 + chrX_5_20150001 chrX_20150001 RAL-502 2965 chrX 20279733 20279767 chrX 20279834 20279868 4 100 4.5 2.5 3.5 0.9 135 chrX 20279733 intergenic not near genes chrX 20279800 intergenic not near genes chrX 20279868 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-502 2966 chrX 20312867 20312906 chrX 20312961 20313003 13 97 4.0 3.5 3.8 2.7 136 chrX 20312867 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20313003 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-502 2967 chrX 20363026 20363041 chrX 20363131 20363146 4 103 1.5 2.0 1.8 1.4 120 chrX 20363026 intergenic not near genes chrX 20363086 intergenic not near genes chrX 20363146 intergenic not near genes chrX_4_20360001 chrX_20360001 RAL-502 2968 chrX 20374077 20374128 chrX 20374172 20374224 17 93 5.0 3.0 4.0 3.4 147 chrX 20374077 intergenic not near genes chrX 20374150 intergenic not near genes chrX 20374224 intergenic not near genes chrX_17_20370001 chrX_20370001 RAL-502 2969 chrX 20415056 20415086 chrX 20415152 20415162 4 90 1.5 1.5 1.5 1.6 106 chrX 20415056 intergenic not near genes chrX 20415109 intergenic not near genes chrX 20415162 intergenic not near genes chrX_4_20415001 chrX_20415001 RAL-502 2970 chrX 20443160 20443202 chrX 20443255 20443298 11 96 5.0 4.5 4.8 1.9 138 chrX 20443160 exon CG1695 + chrX 20443229 intron CG1695 + chrX 20443298 intron CG1695 + chrX_11_20440001 chrX_20440001 RAL-502 2971 chrX 20456646 20456683 chrX 20456767 20456805 11 120 3.0 4.0 3.5 2.4 159 chrX 20456646 intron CG32506 + chrX 20456726 intron CG32506 + chrX 20456805 intron CG32506 + chrX_11_20455001 chrX_20455001 RAL-502 2972 chrX 20467998 20468034 chrX 20468107 20468125 8 106 1.5 0.5 1.0 4.0 127 chrX 20467998 intron GstT3 + chrX 20468062 intron GstT3 + chrX 20468125 intron GstT3 + chrX_8_20465001 chrX_20465001 RAL-502 2973 chrX 20528583 20528602 chrX 20528951 20528968 5 368 8.0 5.0 6.5 0.7 385 chrX 20528583 intergenic not near genes chrX 20528776 intergenic not near genes chrX 20528968 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-502 2974 chrX 20531750 20531792 chrX 20531869 20531910 8 117 1.0 2.5 1.8 2.9 160 chrX 20531750 intergenic not near genes chrX 20531830 intergenic not near genes chrX 20531910 intergenic not near genes chrX_8_20530001 chrX_20530001 RAL-502 2975 chrX 20546546 20546566 chrX 20546723 20546752 7 184 0.0 2.0 1.0 3.5 206 chrX 20546546 intron RunxB + chrX 20546649 intron RunxB + chrX 20546752 intron RunxB + chrX_7_20545001 chrX_20545001 RAL-502 2976 chrX 20635433 20635444 chrX 20635619 20635630 4 186 1.5 5.5 3.5 0.9 197 chrX 20635433 intergenic not near genes chrX 20635532 intergenic not near genes chrX 20635630 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-502 2977 chrX 20637155 20637199 chrX 20637310 20637344 6 152 1.0 1.5 1.2 2.7 189 chrX 20637155 intergenic not near genes chrX 20637250 intergenic not near genes chrX 20637344 intergenic not near genes chrX_6_20635001 chrX_20635001 RAL-502 2978 chrX 20710411 20710440 chrX 20710508 20710537 5 97 1.5 1.0 1.2 2.3 126 chrX 20710411 intergenic not near genes chrX 20710474 intergenic not near genes chrX 20710537 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-502 2979 chrX 20741572 20741586 chrX 20741668 20741679 6 95 4.0 0.0 2.0 2.0 107 chrX 20741572 intergenic not near genes chrX 20741626 intergenic not near genes chrX 20741679 intergenic not near genes chrX_6_20740001 chrX_20740001 RAL-502 2980 chrX 20836705 20836749 chrX 20844327 20844371 roo 10 7620 1.0 6.0 3.5 2.2 7666 chrX 20836705 intron shakB - chrX 20840538 intron shakB - chrX 20844371 intron shakB - chrX_10_20840001 chrX_20840001 RAL-502 2981 chrX 20928672 20928715 chrX 20928776 20928824 4 106 0.0 0.0 0.0 4.0 152 chrX 20928672 intergenic not near genes chrX 20928748 intergenic not near genes chrX 20928824 intergenic not near genes chrX_4_20925001 chrX_20925001 RAL-502 2982 chrX 20940705 20940748 chrX 20942193 20942231 hobo 12 1486 6.0 3.0 4.5 2.2 1526 chrX 20940705 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942231 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-502 2983 chrX 20948243 20948274 chrX 20948352 20948381 5 108 0.0 3.5 1.8 1.8 138 chrX 20948243 intergenic not near genes chrX 20948312 intergenic not near genes chrX 20948381 intergenic not near genes chrX_5_20945001 chrX_20945001 RAL-502 2984 chrX 20956975 20957006 chrX 20962432 20962468 I-element 8 5461 5.5 4.5 5.0 1.3 5493 chrX 20956975 intergenic not near genes chrX 20959722 intergenic not near genes chrX 20962468 intergenic Ser6 - chrX_8_20955001 chrX_20955001 RAL-502 2985 chrX 21076343 21076351 chrX 21076407 21076450 6 92 3.5 0.0 1.8 2.1 107 chrX 21076343 intron bves + chrX 21076396 intron bves + chrX 21076450 intron bves + chrX_6_21075001 chrX_21075001 RAL-502 2986 chrX 21077582 21077606 chrX 21077691 21077696 5 104 5.5 2.0 3.8 1.0 114 chrX 21077582 intron bves + chrX 21077639 intron bves + chrX 21077696 intron bves + chrX_5_21075001 chrX_21075001 RAL-502 2987 chrX 21086115 21086131 chrX 21087164 21087179 jockey 6 1047 9.5 4.5 7.0 0.8 1064 chrX 21086115 intergenic not near genes chrX 21086647 intergenic not near genes chrX 21087179 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-502 2988 chrX 21086133 21086158 chrX 21087157 21087207 jockey 11 1042 5.5 3.5 4.5 2.0 1074 chrX 21086133 intergenic not near genes chrX 21086670 intergenic not near genes chrX 21087207 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-502 2989 chrX 21088022 21088065 chrX 21088173 21088217 12 148 2.0 2.0 2.0 4.0 195 chrX 21088022 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088217 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-502 2990 chrX 21197041 21197087 chrX 21197139 21197185 15 92 4.0 3.0 3.5 3.3 144 chrX 21197041 intergenic not near genes chrX 21197113 intergenic not near genes chrX 21197185 intergenic not near genes chrX_15_21195001 chrX_21195001 RAL-502 2991 chrX 21268049 21268075 chrX 21268150 21268172 10 100 8.0 6.0 7.0 1.2 123 chrX 21268049 intron CG32521 - chrX 21268110 intron CG32521 - chrX 21268172 intron CG32521 - chrX_10_21265001 chrX_21265001 RAL-502 2992 chrX 21303182 21303217 chrX 21303292 21303327 9 109 2.5 2.5 2.5 2.6 145 chrX 21303182 intron CG1718 - chrX 21303254 intron CG1718 - chrX 21303327 intron CG1718 - chrX_9_21300001 chrX_21300001 RAL-502 2993 chrX 21328107 21328145 chrX 21328238 21328276 4 131 0.5 2.5 1.5 1.6 169 chrX 21328107 3` UTR CG1486 + chrX 21328192 intergenic CG1486 +,tty - chrX 21328276 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-502 2994 chrX 21388357 21388401 chrX 21388534 21388578 12 176 3.0 1.0 2.0 4.0 221 chrX 21388357 intergenic Hlc - chrX 21388468 intergenic not near genes chrX 21388578 intergenic mst + chrX_12_21385001 chrX_21385001 RAL-502 2995 chrX 21403837 21403867 chrX 21403917 21403968 13 95 5.5 4.5 5.0 2.2 131 chrX 21403837 intergenic not near genes chrX 21403902 intergenic not near genes chrX 21403968 intergenic not near genes chrX_13_21400001 chrX_21400001 RAL-502 2996 chrX 21410629 21410663 chrX 21410728 21410761 4 98 0.0 1.0 0.5 2.7 132 chrX 21410629 intergenic CR45003 - chrX 21410695 intergenic CR45003 - chrX 21410761 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-502 2997 chrX 21419195 21419237 chrX 21419300 21419342 7 103 3.0 2.5 2.8 1.8 147 chrX 21419195 intergenic not near genes chrX 21419268 intergenic not near genes chrX 21419342 intergenic not near genes chrX_7_21415001 chrX_21415001 RAL-502 2998 chrX 21455193 21455245 chrX 21455392 21455438 7 202 1.0 0.0 0.5 4.7 245 chrX 21455193 intron CG42343 - chrX 21455316 intron CG42343 - chrX 21455438 intron CG42343 - chrX_7_21455001 chrX_21455001 RAL-502 2999 chrX 21458698 21458710 chrX 21464153 21464164 Ivk 4 5455 3.0 5.5 4.2 0.8 5466 chrX 21458698 intergenic not near genes chrX 21461431 intergenic not near genes chrX 21464164 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-502 3000 chrX 21575524 21575545 chrX 21575623 21575644 6 98 2.5 5.0 3.8 1.2 120 chrX 21575524 intergenic not near genes chrX 21575584 intergenic not near genes chrX 21575644 intergenic not near genes chrX_6_21575001 chrX_21575001 RAL-502 3001 chrX 21668237 21668290 chrX 21668342 21668395 13 104 9.5 10.0 9.8 1.2 158 chrX 21668237 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668395 intergenic not near genes chrX_13_21665001 chrX_21665001 RAL-502 3002 chrX 22448251 22448287 chrX 22448410 22448446 4 158 2.5 2.0 2.2 1.2 195 chrX 22448251 intron CG14615 - chrX 22448348 intron CG14615 - chrX 22448446 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-502 3003 chrX 22478851 22478890 chrX 22479004 22479043 10 152 4.0 3.5 3.8 2.1 192 chrX 22478851 intron CG12576 - chrX 22478947 intron CG12576 - chrX 22479043 intron CG12576 - chrX_10_22475001 chrX_22475001 RAL-502 3004 chrX 22564562 22564578 chrX 22575114 22575137 jockey 8 10555 20.5 6.5 13.5 0.6 10575 chrX 22564562 intergenic not near genes chrX 22569850 intergenic not near genes chrX 22575137 intergenic not near genes chrX_8_22565001 chrX_22565001 RAL-502 3005 chrX 22617686 22617701 chrX 22617787 22617799 4 100 2.0 0.0 1.0 2.0 113 chrX 22617686 intron Cda4 - chrX 22617742 intron Cda4 - chrX 22617799 intron Cda4 - chrX_4_22615001 chrX_22615001 RAL-502 3006 chrX 22620482 22620509 chrX 22626766 22626793 297 6 6284 3.0 1.5 2.2 1.9 6311 chrX 22620482 intron Cda4 - chrX 22623638 intron Cda4 - chrX 22626793 intron Cda4 - chrX_6_22620001 chrX_22620001 RAL-502 3007 chrX 22638609 22638638 chrX 22639417 22639443 10 803 4.5 3.5 4.0 2.0 834 chrX 22638609 intergenic not near genes chrX 22639026 intergenic not near genes chrX 22639443 intergenic not near genes chrX_10_22635001 chrX_22635001 RAL-502 3008 chrX 22643101 22643142 chrX 22644035 22644078 6 934 0.0 3.0 1.5 2.4 977 chrX 22643101 intergenic not near genes chrX 22643590 intergenic not near genes chrX 22644078 intergenic not near genes chrX_6_22640001 chrX_22640001 RAL-502 3009 chrX 22660551 22660602 chrX 22660655 22660705 4 104 2.5 0.5 1.5 1.6 154 chrX 22660551 intron CR44997 + chrX 22660628 intron CR44997 + chrX 22660705 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-502 3010 chrX 22665775 22665821 chrX 22665874 22665920 17 98 3.5 7.0 5.2 2.7 145 chrX 22665775 intron CR44997 + chrX 22665848 intron CR44997 + chrX 22665920 intron CR44997 + chrX_17_22665001 chrX_22665001 RAL-502 3011 chrX 22697487 22697496 chrX 22701804 22701812 Juan 4 4316 4.5 7.0 5.8 0.6 4325 chrX 22697487 intron CR44997 + chrX 22699650 intron CR44997 + chrX 22701812 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-502 3012 chrX 22697498 22697520 chrX 22701797 22701832 Juan 8 4314 3.5 6.0 4.8 1.4 4334 chrX 22697498 intron CR44997 + chrX 22699665 intron CR44997 + chrX 22701832 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-502 3013 chrX 22771501 22771537 chrX 22774812 22774842 297 8 3307 4.5 4.0 4.2 1.5 3341 chrX 22771501 intron CR44997 + chrX 22773172 intron CR44997 + chrX 22774842 intron CR44997 + chrX_8_22770001 chrX_22770001 RAL-502 3014 chrX 22811977 22812003 chrX 22816769 22816795 F-element 6 4792 7.5 4.5 6.0 0.9 4818 chrX 22811977 intergenic CG12446 - chrX 22814386 intergenic not near genes chrX 22816795 intergenic not near genes chrX_6_22810001 chrX_22810001 RAL-502 3015 chrX 22824229 22824443 chrX 22824371 22824596 10 149 2.0 1.5 1.8 3.6 367 chrX 22824229 intergenic fog - chrX 22824412 3` UTR fog - chrX 22824596 3` UTR fog - chrX_10_22820001 chrX_22820001 RAL-502 3016 chrX 22992378 22992419 chrX 22992526 22992569 11 150 4.5 1.5 3.0 2.8 191 chrX 22992378 intron,intron stnA -,stnB - chrX 22992474 intron,intron stnA -,stnB - chrX 22992569 3` UTR,exon stnA -,stnB - chrX_11_22990001 chrX_22990001 RAL-502 3017 chrX 22996297 22996330 chrX 23003549 23003582 roo 6 7251 3.5 4.5 4.0 1.2 7285 chrX 22996297 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003582 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-502 3018 chrY 975604 975819 chrY 975741 975965 7 118 103.5 121.0 112.2 0.1 361 chrY 975604 intergenic not near genes chrY 975784 intergenic not near genes chrY 975965 intergenic not near genes chrY_7_975001 chrY_975001 RAL-502